BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780727|ref|YP_003065140.1| putative pilus assembly
protein [Candidatus Liberibacter asiaticus str. psy62]
(474 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040404|gb|ACT57200.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 474
Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats.
Identities = 474/474 (100%), Positives = 474/474 (100%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL
Sbjct: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI
Sbjct: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS
Sbjct: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS
Sbjct: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS
Sbjct: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV
Sbjct: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK
Sbjct: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK
Sbjct: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
>gi|15963894|ref|NP_384247.1| putative pilus assembly transmembrane protein [Sinorhizobium
meliloti 1021]
gi|307315791|ref|ZP_07595305.1| type II and III secretion system protein [Sinorhizobium meliloti
BL225C]
gi|307320426|ref|ZP_07599843.1| type II and III secretion system protein [Sinorhizobium meliloti
AK83]
gi|15073069|emb|CAC41528.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306893992|gb|EFN24761.1| type II and III secretion system protein [Sinorhizobium meliloti
AK83]
gi|306898559|gb|EFN29232.1| type II and III secretion system protein [Sinorhizobium meliloti
BL225C]
Length = 511
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 209/508 (41%), Positives = 307/508 (60%), Gaps = 37/508 (7%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
+ + + +S L S ++ LP + A+++V+ I D G K I++GLNK +++
Sbjct: 6 KKFRASLAAGLSFCLTFSGMALPTLPAAEAASSSVVRIVDSGPGARKTINLGLNKAVVVD 65
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
+P D D+LV+DP+ AD + + R +YLFGK+VGQ N+ + G G+++++L++ +ERD+A
Sbjct: 66 LPSDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVA 125
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ------ 175
LE LRRFI D++I VE++SD VVL G VRT DS RAV+L+ FL
Sbjct: 126 GLEANLRRFIPDADINVEIISDNVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQ 185
Query: 176 ---------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
+ + +++NLL I G+DQVTLKVT+AEV R +LKQ+GF ++ SG
Sbjct: 186 GNNGDADIFAEDRQNSQIVNLLTIEGDDQVTLKVTVAEVSRQVLKQLGFNGRVSDGESGI 245
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
S A+ G ++ G + +KG + + + ++A+E+A +RTLAEP+LTAISGQ A
Sbjct: 246 SFRNPANLG-DAIAVGTNALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAISGQEAK 304
Query: 287 FTSGGQH---------LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
F GG+ +T V +YG+ L+F P VL PGRI L+I+T+VS
Sbjct: 305 FYVGGEFRLAGVQEVSTDDETGQTTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVS 364
Query: 338 EPV-----------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
EP + R R+A T+VELPSGG+IV+AGL++D+I+Q G+P
Sbjct: 365 EPTYEGSVVTGNSMTAIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLP 424
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
SKIPILG LFR+ F R ETE+ I ATP+LV+PVA +SRPDD+++ +D ++FF
Sbjct: 425 GASKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISRPDDNFNPANDLESFFLG 484
Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474
RVN+IYG EA G+ Y G +GFIYK
Sbjct: 485 RVNRIYGRPEAQPPAGR-YHGNVGFIYK 511
>gi|332560337|ref|ZP_08414659.1| Type II and III secretion system protein precursor [Rhodobacter
sphaeroides WS8N]
gi|332278049|gb|EGJ23364.1| Type II and III secretion system protein precursor [Rhodobacter
sphaeroides WS8N]
Length = 466
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 134/454 (29%), Positives = 225/454 (49%), Gaps = 28/454 (6%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
AA + +E +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK
Sbjct: 29 PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 88
Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
G+ + L+G DG+ + N+D+ + D+A + LR+ + NI V +D +VL G V
Sbjct: 89 APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 148
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+ RA++L+ + + +V NL+++ G QV LKV AE++R + K
Sbjct: 149 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 196
Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALE 264
+G S G G S+ + F+ +L ALE
Sbjct: 197 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGNPISTSGNGALSLGFSVGALEFQVLLEALE 256
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+RTLAEP LTA+SGQ A F +GG++ V+S S+ +GV L+FTP V+
Sbjct: 257 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVD 315
Query: 325 PGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+I L I VS V + + +++ R+ TTVE+ G + +AGLL+DD +
Sbjct: 316 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 375
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
L +P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + +
Sbjct: 376 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 435
Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
F F RV G A+EV Q++ G+ G++ +
Sbjct: 436 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 466
>gi|315121891|ref|YP_004062380.1| putative pilus assembly protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495293|gb|ADR51892.1| putative pilus assembly protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 471
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 330/474 (69%), Positives = 389/474 (82%), Gaps = 3/474 (0%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M+ Q+T F + IF+ SSN +A+ + NA+ I+I D IG KKI+IGL KV+IL
Sbjct: 1 MKNFQKTLFMLFVIFISSSNFLLAQSKLVDAKNASTIHIGDSAIGTSKKINIGLGKVVIL 60
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+P VQDVLVSDPTKADVVVHS +T+Y+FGK+VGQANVILIGHD KQ+LN+DI IERDI
Sbjct: 61 HLPSRVQDVLVSDPTKADVVVHSSKTVYIFGKSVGQANVILIGHDEKQLLNIDIFIERDI 120
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+LEMT RRF++ SNI VEM+SD +VLHG VRTIQDSQ AVELS FLS N Y +S
Sbjct: 121 RNLEMTFRRFLSGSNIHVEMLSDNLVLHGEVRTIQDSQHAVELSNMFLSNERNNLYKTAS 180
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
KV+NLLNI EDQVTLKVTIAEVRRD+LKQIGFQH+I SS GPSK DF G
Sbjct: 181 GSKVINLLNIGAEDQVTLKVTIAEVRRDVLKQIGFQHTI--SSGGPSKGKRIDFDGSLGG 238
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+G DF++ +LDRF+F++VL+ALERATAIRTLAEPTLTAISGQ+A+F SGG LY++V
Sbjct: 239 QGADFAMTTILDRFTFKSVLNALERATAIRTLAEPTLTAISGQNATFRSGGTRLYRSV-G 297
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ G +++T HDYGVVL FTPTVLSPGRIGLRI+TEVSEPV+GV+ P YR+RKADTTV
Sbjct: 298 ANGTSTITPHDYGVVLTFTPTVLSPGRIGLRIETEVSEPVLGVSTTGEPEYRMRKADTTV 357
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
ELPSGGTIVLAGLLKDDIQQ + G+PLLSKIPILGALFR++ F+REETEIFI+ATPFLVK
Sbjct: 358 ELPSGGTIVLAGLLKDDIQQKRGGVPLLSKIPILGALFRSNSFSREETEIFISATPFLVK 417
Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
PVAM +LSRPDD+Y +E+DAKAF FNRVNKIYGPKEA++ GQNYKGAIGFIYK
Sbjct: 418 PVAMNELSRPDDNYDIENDAKAFLFNRVNKIYGPKEAAQGNGQNYKGAIGFIYK 471
>gi|146276361|ref|YP_001166520.1| type II and III secretion system protein [Rhodobacter sphaeroides
ATCC 17025]
gi|145554602|gb|ABP69215.1| type II and III secretion system protein [Rhodobacter sphaeroides
ATCC 17025]
Length = 461
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 133/475 (28%), Positives = 230/475 (48%), Gaps = 28/475 (5%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
M+ L ++A + + + +E +++ +N+ ++++ ++ +
Sbjct: 3 MNHILRMGMAALAFMASAAPMAVSAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSI 62
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
++P AD+ S ++Y+ GK G+ + L+G DG+ + N+D+ + D+A + LR+ +
Sbjct: 63 ANPGIADISTLSETSIYVLGKAPGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQIL 122
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
NI V +D +VL G V + + RA++L+ + + +V NL+++
Sbjct: 123 PGENIEVRTANDGIVLSGTVTSAERLDRALDLANRY------------APDRVSNLMSVG 170
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------G 243
G QV LKV AE++R + K +G S G G
Sbjct: 171 GTQQVMLKVRFAEMQRSVAKSLGSSIYARNGSGSVIGGTGTLLQNGIPPSGAPITTAATG 230
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ + F +L ALE +RTLAEP LTA+SGQ A F +GG++ V+S
Sbjct: 231 ALGLGFSVGALEFSVLLEALESKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDE 289
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTT 359
++ +GV L+FTP V+ +I L I VS V+ + +++ R+ TT
Sbjct: 290 KIAIEYKPFGVELNFTPVVVDGSQINLMINAAVSSIDNTVSLESAGFTINAFKRRETSTT 349
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VE+ G + +AGLL+DD + L +P L IPILGALFR++ + R ++E+ I TP LV
Sbjct: 350 VEMRDGESFAIAGLLQDDFRNLNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLV 409
Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
P L+ P D + + + F F RV G A EV Q++ G+ G++ +
Sbjct: 410 TPTRGEALALPTDRIKLPSEKELFLFGRVT---GRGAAGEVARQDFSGSYGYVME 461
>gi|221638316|ref|YP_002524578.1| Type II and III secretion system protein [Rhodobacter sphaeroides
KD131]
gi|221159097|gb|ACM00077.1| Type II and III secretion system protein precursor [Rhodobacter
sphaeroides KD131]
Length = 461
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 134/454 (29%), Positives = 225/454 (49%), Gaps = 28/454 (6%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
AA + +E +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK
Sbjct: 24 PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83
Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
G+ + L+G DG+ + N+D+ + D+A + LR+ + NI V +D +VL G V
Sbjct: 84 APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+ RA++L+ + + +V NL+++ G QV LKV AE++R + K
Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191
Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALE 264
+G S G G S+ + F+ +L ALE
Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALE 251
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+RTLAEP LTA+SGQ A F +GG++ V+S S+ +GV L+FTP V+
Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVD 310
Query: 325 PGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+I L I VS V + + +++ R+ TTVE+ G + +AGLL+DD +
Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
L +P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + +
Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430
Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
F F RV G A+EV Q++ G+ G++ +
Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461
>gi|126461331|ref|YP_001042445.1| type II and III secretion system protein [Rhodobacter sphaeroides
ATCC 17029]
gi|126102995|gb|ABN75673.1| type II and III secretion system protein [Rhodobacter sphaeroides
ATCC 17029]
Length = 461
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 134/454 (29%), Positives = 225/454 (49%), Gaps = 28/454 (6%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
AA + +E +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK
Sbjct: 24 PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83
Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
G+ + L+G DG+ + N+D+ + D+A + LR+ + NI V +D +VL G V
Sbjct: 84 APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+ RA++L+ + + +V NL+++ G QV LKV AE++R + K
Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191
Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALE 264
+G S G G S+ + F+ +L ALE
Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALE 251
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+RTLAEP LTA+SGQ A F +GG++ V+S S+ +GV L+FTP V+
Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVD 310
Query: 325 PGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+I L I VS V + + +++ R+ TTVE+ G + +AGLL+DD +
Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
L +P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + +
Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430
Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
F F RV G A+EV Q++ G+ G++ +
Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461
>gi|77462453|ref|YP_351957.1| Outer membrane general secretion pathway protein, secretin
[Rhodobacter sphaeroides 2.4.1]
gi|77386871|gb|ABA78056.1| Outer membrane general secretion pathway protein, Secretin
[Rhodobacter sphaeroides 2.4.1]
Length = 461
Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats.
Identities = 134/454 (29%), Positives = 225/454 (49%), Gaps = 28/454 (6%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
AA + +E +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK
Sbjct: 24 PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83
Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
G+ + L+G DG+ + N+D+ + D+A + LR+ + NI V +D +VL G V
Sbjct: 84 APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+ RA++L+ + + +V NL+++ G QV LKV AE++R + K
Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191
Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALE 264
+G S G G S+ + F+ +L ALE
Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGASIATSGNGALSLGFSVGALEFQVLLEALE 251
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+RTLAEP LTA+SGQ A F +GG++ V+S S+ +GV L+FTP V+
Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVD 310
Query: 325 PGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+I L I VS V + + +++ R+ TTVE+ G + +AGLL+DD +
Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
L +P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + +
Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430
Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
F F RV G A+EV Q++ G+ G++ +
Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461
>gi|255262444|ref|ZP_05341786.1| outer membrane general secretion pathway protein, Secretin
[Thalassiobium sp. R2A62]
gi|255104779|gb|EET47453.1| outer membrane general secretion pathway protein, Secretin
[Thalassiobium sp. R2A62]
Length = 480
Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats.
Identities = 137/478 (28%), Positives = 228/478 (47%), Gaps = 28/478 (5%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
T+ M L + + +P A + +++ +N+ ++++ V
Sbjct: 19 TYDRFMKAALMGLFVATSSVPAAVSAETLRVMRG----APSSALNVPMNRAVVVESDVPF 74
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
++ +++P AD+ S RT+Y+ GK G+ + L+G DG+ + N+D+ + DIA +
Sbjct: 75 AELSIANPGIADISTLSDRTIYVLGKLPGRTTLTLLGPDGRLITNVDVHVTPDIAEFKER 134
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L + + NI V +D +VL G+V + RA++L+E + + +V N
Sbjct: 135 LSQILPGENIEVRTANDGIVLSGVVSSSARLTRALDLAERY------------APDRVSN 182
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGKFVSEG 242
L+++ G QV L+V AE++R + K + +I G+ + GG
Sbjct: 183 LMSVGGTQQVMLRVRFAEMQRSVRKSLSSSVNIFGTGFSTAAGNINGVQAAGGGITTDAT 242
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
G F +L ALE +RTLAEP LTA+SGQ A F +GG++ V+
Sbjct: 243 GAAFFGIDAGDIQFNVLLEALESKGVVRTLAEPNLTALSGQEAHFLAGGEYPVP-VAQEG 301
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-----DMPSYRVRKAD 357
G T+V D+GV L F P V+ I L ++ VS + ++R R+
Sbjct: 302 GTTTVEYKDFGVELTFLPVVVDQDLINLTLKASVSSIDTTNGVQVGSDFTIAAFRTRETS 361
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TTVE+ G + +AGLL+DD L +P L +P+LGALFR++ +NR ++E+ I TP
Sbjct: 362 TTVEMRDGESFAIAGLLQDDFTDLNGQVPWLGDVPVLGALFRSAEYNRSQSELVIIVTPH 421
Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV--NKIYGPKEASEVEGQNYKGAIGFIY 473
LV P L+ P D + F F RV + A EV Q++ G+ G++
Sbjct: 422 LVTPTRGEALALPTDRVRPPTERDLFLFGRVAASDAPQSGAAGEVAKQDFSGSYGYVM 479
>gi|260426909|ref|ZP_05780888.1| type II and III secretion system protein [Citreicella sp. SE45]
gi|260421401|gb|EEX14652.1| type II and III secretion system protein [Citreicella sp. SE45]
Length = 473
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 135/483 (27%), Positives = 236/483 (48%), Gaps = 38/483 (7%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
+ L + L A+ N+ V G +++ +N+ ++++ ++ +
Sbjct: 7 LKAALIGLALTAGPLVEGARAD----NLRVVRTGTESVLNVPMNRAVVVESDQPFAELSI 62
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
++P AD+ S RT+Y+ GK G + ++ +G+ + N+D+ + D+ + LR+ +
Sbjct: 63 ANPAIADISSLSERTIYVLGKTPGTTTLTILDGNGRLITNVDVRVAADVTEFKERLRQIL 122
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
+I V +D +VL G V + Q QRA++L++ + + ++V NL+ +
Sbjct: 123 PGESIEVRTANDGIVLSGTVSSAQKLQRALDLAQRY------------APERVSNLMTVG 170
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS----- 246
G QV LKV AE++R + K + SI G G + G +++ G +
Sbjct: 171 GVQQVMLKVRFAEMQRSVSKNLRSSLSIGGPIFGEDEITIGSETGTWLNSGNSYGDAVTV 230
Query: 247 --------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ G +L ALE +RTLAEP LTA+SGQ A F +GG++ V
Sbjct: 231 ADGTESALLLGFNGAIEVGILLEALESKGMVRTLAEPNLTALSGQEAKFLAGGEYPVP-V 289
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVR 354
S G SVT +GV L+F PTV+ I L+++ VS +A + ++R R
Sbjct: 290 SQEDGKLSVTYKPFGVELNFVPTVIDGDLINLQLEAAVSSIDSSNGITTDAISIDAFRRR 349
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ TTVE+ G + +AGLL+DD + + +P + IP+LGALFR++ + R+++E+ I
Sbjct: 350 ETSTTVEMRDGESFAIAGLLQDDFRDVNGQVPWIGDIPVLGALFRSAEYERQQSELVIIV 409
Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN----KIYGPKEASEVEGQNYKGAIG 470
TP LV P L+ P D + F F R + + A+EV Q++ G+ G
Sbjct: 410 TPHLVTPTRGEALALPTDRVMPPTEKDLFLFGRTSSDDARRPRTGGAAEVARQDFTGSYG 469
Query: 471 FIY 473
++
Sbjct: 470 YVM 472
>gi|56697919|ref|YP_168290.1| type II/III secretion system protein [Ruegeria pomeroyi DSS-3]
gi|56679656|gb|AAV96322.1| bacterial type II/III secretion system protein [Ruegeria pomeroyi
DSS-3]
Length = 475
Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats.
Identities = 127/480 (26%), Positives = 231/480 (48%), Gaps = 33/480 (6%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
++ L + + + + +A + V+ G + + + +N+ I+++ ++
Sbjct: 13 LIKAALTGLALACSPMTGLAQAQDLRV----VKQGAAETLDVPMNRAIVVESETPFAELS 68
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
+++ AD+ S RT+Y+ GK+ G + L G+ + N+++ + D+A + L++
Sbjct: 69 IANAGIADISSLSDRTIYVLGKSPGLTTLSLFDAGGRLITNVNVRVSFDVAEFKERLKQI 128
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ + I V +D +VL G + QRA++L+E + + ++V NL+++
Sbjct: 129 LPNEKIEVRTANDGIVLSGTASSTARLQRALDLAERY------------APERVSNLMSV 176
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------GPSKSFAADFGGKFVS--- 240
AG QV LKV AE++R + K + ++G + S S GG +
Sbjct: 177 AGVQQVMLKVRFAEMQRSVSKSLSASLGVSGGNIVGGLNTLNSSGSLTNAIGGSIPALND 236
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G +L ALER +RTLAEP L+A+SGQ A F +GG++ V+
Sbjct: 237 NAGAILFGFSAGSTQVRLLLEALERKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQ 295
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356
G +V +GV + F P V+ I L + VS + VN D+ +++ R+
Sbjct: 296 RDGLFTVEYKPFGVEMAFIPRVVDGDLINLELLAAVSSLDPNNSVTVNGFDIAAFQRRET 355
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
TTVEL G + +AGL++D+ + +P L +P+LGALFR++ + R +TE+ I T
Sbjct: 356 STTVELKDGESFAIAGLIEDEFLDNNQQLPWLGDVPVLGALFRSANYQRSQTELVIIITA 415
Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFIYK 474
LV P L+ P D +A F + + + ASEV Q++ G+ G++ +
Sbjct: 416 HLVSPTRGEALALPTDRVKPPSEADLFLRGKTARTERARGGAASEVARQDFSGSYGYVLE 475
>gi|163738370|ref|ZP_02145785.1| bacterial type II/III secretion system protein [Phaeobacter
gallaeciensis BS107]
gi|161388291|gb|EDQ12645.1| bacterial type II/III secretion system protein [Phaeobacter
gallaeciensis BS107]
Length = 484
Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats.
Identities = 125/484 (25%), Positives = 230/484 (47%), Gaps = 35/484 (7%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
F ++ L + + N + V+ G + + +N+ ++++ V
Sbjct: 18 AFRRYVAAALTGLSLVCFPVADAAWGNGLRV----VKKGTAANLEVPMNRAVVVESDVPF 73
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
++ +++P+ AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ +
Sbjct: 74 SELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDASGRLITNVDVRVAADVSEFKER 133
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
LR+ + I V +D +VL G+V + QRA++L+E + + ++V N
Sbjct: 134 LRQILPGEKIEVRTANDGIVLSGVVSSSARLQRALDLAERY------------APERVSN 181
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------SSSGPSKSFAAD 233
L+++ G QV LKV AE++R + K + + G ++ G + +
Sbjct: 182 LMSVGGVQQVMLKVRFAEMQRTVSKSLSASLGVKGGNSVGVNGGTSTLNTQGALTNSLSG 241
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
G F F +L ALE+ +RTLAEP L+A+SGQ A F +GG++
Sbjct: 242 NIPAGNDNTGAFVFGFNAGAFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEY 301
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMP 349
V+ G ++ +G+ L+F P V+ I L ++ VS N +
Sbjct: 302 PIP-VAQEDGIITIEFKPFGIELNFVPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIA 360
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
++ R+ TTVEL G + +AGL++D+ + +P + +P+LG+LFR++ + R +TE
Sbjct: 361 AFSRRETSTTVELRDGESFAIAGLIRDEFRDSSSQLPWIGDVPVLGSLFRSANYQRAQTE 420
Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
+ I + LV P LS P D +++ F RV K ASEV Q++ G+
Sbjct: 421 LVIIVSAHLVTPTRGEALSLPTDRIRPPSESELFLMGRVAKGQ-KGPASEVAKQDFNGSY 479
Query: 470 GFIY 473
G++
Sbjct: 480 GYVM 483
>gi|84687277|ref|ZP_01015157.1| Outer membrane general secretion pathway protein, Secretin
[Maritimibacter alkaliphilus HTCC2654]
gi|84664710|gb|EAQ11194.1| Outer membrane general secretion pathway protein, Secretin
[Rhodobacterales bacterium HTCC2654]
Length = 474
Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats.
Identities = 136/488 (27%), Positives = 227/488 (46%), Gaps = 38/488 (7%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
+ L S +P A + G + +++ +N+ ++++
Sbjct: 3 LDRYVKAALTGLALSWITVPLPGMAQTLRVMDG----GVAETLNVPMNRAVVVESDQPFA 58
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
++ +++P AD+ S RT+Y+ GK+ G+ + L+ DG + N+++ + D++ + L
Sbjct: 59 EISIANPGIADISTLSDRTIYVLGKSQGRTTLTLLAPDGTLISNVEVQVTPDLSEFKERL 118
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
R+ + I V +D +VL G V +I RA++L+E + + KV NL
Sbjct: 119 RQILPGEPIEVRTANDGIVLSGTVTSIAALDRALDLAERY------------APDKVSNL 166
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------ 241
L++ G QV LKV AE++R + K + + +G S G +
Sbjct: 167 LSVGGTQQVMLKVRFAEMQRSVTKSLSSSLGFGTNINGLGGSIGTGALGNQANLDAASAG 226
Query: 242 ---------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
G F+ F +L ALE +RTLAEP LTA+SGQ ASF +GG+
Sbjct: 227 DLISTGNDRTGAFTFGFNAGALQFAVMLEALENKGMVRTLAEPNLTALSGQEASFLAGGE 286
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDM 348
+ +V GA + +GV L FTP V+ I L++ VS G A +
Sbjct: 287 YPIPSV-QENGAVVIDYKPFGVELTFTPRVVDQDIINLQMTASVSGLDNSVTYGDGAISV 345
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
+++ R+ TTVE+ G + +AGLL+DD + L +P L +PILGALFR++ + R ++
Sbjct: 346 NAFKRRETSTTVEMRDGQSFAIAGLLQDDFRDLNGQVPWLGDVPILGALFRSADYERSQS 405
Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP--KEASEVEGQNYK 466
E+ I TP LV P L+ P D +A F P A EV Q++
Sbjct: 406 ELVIIVTPHLVTPTRGEALALPTDRVRPPSEADLFLRGNTAAPNRPTTGAAGEVARQDFT 465
Query: 467 GAIGFIYK 474
G+ G++ +
Sbjct: 466 GSYGYVME 473
>gi|254466441|ref|ZP_05079852.1| bacterial type II/III secretion system protein [Rhodobacterales
bacterium Y4I]
gi|206687349|gb|EDZ47831.1| bacterial type II/III secretion system protein [Rhodobacterales
bacterium Y4I]
Length = 468
Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats.
Identities = 121/484 (25%), Positives = 226/484 (46%), Gaps = 35/484 (7%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
++ L + A + + V+ G + + +N+ ++++ +
Sbjct: 2 AIRRFVAAALMGLSLIGVPQADGAWAQSLRV----VKKGTAATLDVPMNRAVVVESEIPF 57
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
++ +++P+ AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D+ +
Sbjct: 58 AELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDGSGRLITNVDVRVAADVTEFKQR 117
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
LR+ + + I V +D +VL G V + QRA++L+E + + ++V N
Sbjct: 118 LRQILPNEKIEVRTANDGIVLSGTVSSSARLQRALDLAERY------------APERVSN 165
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGG 236
L+++ G QV LKV AE++R + K + ++ S + A G
Sbjct: 166 LMSVGGVQQVMLKVRFAEMQRSVSKSLSASLGFNGGTGNGRTGGYNTLNTSGALANSLAG 225
Query: 237 KFVS---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
+ G F +L ALE+ +RTLAEP L+A+SGQ A F +GG++
Sbjct: 226 NIPAANENTGAFLFGFNAGSVQVSLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEY 285
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMP 349
V+ G ++ +G+ L+F P V+ I L + VS + +
Sbjct: 286 PVP-VAQEGGVITIEFKPFGIELNFIPRVIDGDLINLELNAAVSAIDPTNSLELSGLTID 344
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
++ R+ TTVE+ G + +AGL++D+ +P L +P+LGALFR++ + RE+TE
Sbjct: 345 AFSRRETSTTVEMRDGESFAIAGLIRDEFLDNSSQLPWLGDVPVLGALFRSADYQREQTE 404
Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
+ I + LV P L+ P D + + F F R ++ A+EV Q++ G+
Sbjct: 405 LVIIVSAHLVTPTRGEALTLPTDRVAPPSEKDLFLFGRTSR-NRAGPAAEVAKQDFNGSY 463
Query: 470 GFIY 473
G++
Sbjct: 464 GYVL 467
>gi|227823971|ref|YP_002827944.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium
fredii NGR234]
gi|227342973|gb|ACP27191.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium
fredii NGR234]
Length = 515
Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats.
Identities = 210/517 (40%), Positives = 304/517 (58%), Gaps = 45/517 (8%)
Query: 1 MRYLQRTFFTMMSI----FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56
M+ TF T ++ L S + +P + A ++V+ I + G +K+++GLNK
Sbjct: 1 MKRSGNTFRTCLAAGLSFSLTFSGLMLPAVPTAQAAASSVVRIVESGPGVKRKVNLGLNK 60
Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
+++ +P D D+LV+DP AD V + R +YLFGK VGQ N+ + G +G+++++L++ +
Sbjct: 61 AVVVDLPTDAHDILVADPVLADAVTRTSRRIYLFGKTVGQTNIFVFGPNGEEIVSLEVAV 120
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ- 175
ERD+A LE LRRFI +++I VE++SD VVL G VRT DS +AV+L+ FL
Sbjct: 121 ERDVAGLEANLRRFIPEADINVEIISDNVVLTGTVRTPLDSTKAVDLARAFLQGGEATTR 180
Query: 176 --------------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
+ +++NLL + GEDQVTLKVT+AEV R +LKQ+GF I+
Sbjct: 181 NITAQGTNGDADIFAEERQTSQIVNLLTVEGEDQVTLKVTVAEVSRQVLKQLGFNGRISD 240
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
SG S A+ G + G + +KG + + + ++A+E+A +RTLAEP+LTAIS
Sbjct: 241 GESGLSFRNPANLG-DAIGVGANALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAIS 299
Query: 282 GQSASFTSGGQHLYKTVSSSTGATS-------------VTTHDYGVVLHFTPTVLSPGRI 328
GQ A F GG+ V T V +YG+ L+F P VL GRI
Sbjct: 300 GQEAKFYVGGEFRLAGVQEITTEEDEATGESVPVVEREVEDAEYGIRLNFKPVVLGAGRI 359
Query: 329 GLRIQTEVSEPVIGVN-----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
L I+TEVSEP + R R+A T+VELPSGG+IV+AGL++D+
Sbjct: 360 SLAIETEVSEPTYEGSVVTGNSFRDIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDN 419
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
I+Q G+P SKIPILG LFR+ F R E+E+ I ATP+LV+PVA LSRPDD+++
Sbjct: 420 IRQAMSGLPGASKIPILGTLFRSKDFQRNESELVIIATPYLVRPVARSALSRPDDNFNPA 479
Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
+D ++FF RVN+IYG EA+ G+ Y G +GFIYK
Sbjct: 480 NDLESFFVGRVNRIYGRPEAAPPVGR-YHGNVGFIYK 515
>gi|163757627|ref|ZP_02164716.1| putative pilus assembly transmembrane protein [Hoeflea
phototrophica DFL-43]
gi|162285129|gb|EDQ35411.1| putative pilus assembly transmembrane protein [Hoeflea
phototrophica DFL-43]
Length = 496
Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats.
Identities = 213/493 (43%), Positives = 297/493 (60%), Gaps = 27/493 (5%)
Query: 5 QRTFFTMMSIFLFSSN--------PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56
+ ++ I L S P+ +L +A+ +I I G K++ +GLNK
Sbjct: 8 KSLLSSIAGIALVGSVLVTGVLVDPTTGRLATPAQASQNIIKIKKSGPGVSKRVKLGLNK 67
Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
I++ +P D D+LV+DP AD V + R +YLFGK VGQ N+ + G +G++++ +++ I
Sbjct: 68 AIVVDLPTDAHDILVADPALADAVTRTSRRLYLFGKTVGQTNIFVFGPNGEEIIAIELEI 127
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL-------- 168
ERD+A LE+ L RF+ DSNI+VE++SD +VL G VRT QD+ +A L+E FL
Sbjct: 128 ERDVAGLEVHLARFLPDSNIQVEIISDNIVLTGSVRTPQDASQAARLAEIFLTGGEATTR 187
Query: 169 -------SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
+ K++NLL I GEDQVTLKVTIAEV R +LKQ+GF +I+G
Sbjct: 188 VTTATSEGGDAAINAEDRQKSKIVNLLKIDGEDQVTLKVTIAEVSRQVLKQLGFNTTISG 247
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
S + + + SV G + + ALERA IRTLAEP+LTAIS
Sbjct: 248 DGSSSFGNSPSPWL-SVPGLASVGSVAGTISGARISADISALERAGVIRTLAEPSLTAIS 306
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
G+ A F+ GG ++ G T +YG+ L FTP VL+PGRI LRI+TEVSEP
Sbjct: 307 GEVARFSVGGSFEIESERDEDG-TIFEEKEYGIKLEFTPVVLAPGRISLRIKTEVSEPTF 365
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ +PS + R+A+T+VELPSGG++VLAGL++D +Q G+P SKIP+LG+LFR+
Sbjct: 366 EGQS-PLPSIQKREAETSVELPSGGSMVLAGLVRDSYRQTISGMPGASKIPVLGSLFRSK 424
Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
F R ETE+ I ATP+LVKPVA +LSRPDD+++ D FF RVN++YG E
Sbjct: 425 EFLRNETELVIIATPYLVKPVARNELSRPDDNFNAPSDGAGFFLGRVNRVYGQMETGLPA 484
Query: 462 GQNYKGAIGFIYK 474
G+ Y GA+GFIYK
Sbjct: 485 GR-YHGAVGFIYK 496
>gi|163742213|ref|ZP_02149601.1| bacterial type II/III secretion system protein [Phaeobacter
gallaeciensis 2.10]
gi|161384543|gb|EDQ08924.1| bacterial type II/III secretion system protein [Phaeobacter
gallaeciensis 2.10]
Length = 484
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 124/484 (25%), Positives = 231/484 (47%), Gaps = 35/484 (7%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
F ++ L + + N + V+ G + + +N+ ++++ V
Sbjct: 18 AFRRYVAAALTGLSLVCFPVADAAWGNGLRV----VKKGTAANLEVPMNRAVVVESDVPF 73
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
++ +++P+ AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ +
Sbjct: 74 SELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDASGRLITNVDVRVAADVSEFKER 133
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
LR+ + I V +D +VL G+V + QRA++L+E + + ++V N
Sbjct: 134 LRQILPGEKIEVRTANDGIVLSGVVSSSARLQRALDLAERY------------APERVSN 181
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------SSSGPSKSFAAD 233
L+++ G QV LKV AE++R + K + + G ++ G + +
Sbjct: 182 LMSVGGVQQVMLKVRFAEMQRTVSKSLSASLGVKGGNSVGVNGGTSTLNTQGALTNSLSG 241
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
G F F +L ALE+ +RTLAEP L+A+SGQ A F +GG++
Sbjct: 242 NIPAANDNTGAFVFGFNAGAFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEY 301
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMP 349
V+ G ++ +G+ L+F P V+ I L ++ VS N +
Sbjct: 302 PIP-VAQEDGVITIEFKPFGIELNFIPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIA 360
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
++ R++ TTVE+ G + +AGL++D+ + +P + +P+LG+LFR++ + R +TE
Sbjct: 361 AFSRRESVTTVEMRDGESFAIAGLIRDEFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTE 420
Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
+ I + LV P LS P D +++ F RV K ASEV Q++ G+
Sbjct: 421 LVIIVSAHLVTPTRGEALSLPTDRIRPPSESELFLMGRVAKGQ-KGPASEVAKQDFNGSY 479
Query: 470 GFIY 473
G++
Sbjct: 480 GYVM 483
>gi|84501676|ref|ZP_00999848.1| bacterial type II/III secretion system protein [Oceanicola
batsensis HTCC2597]
gi|84390297|gb|EAQ02856.1| bacterial type II/III secretion system protein [Oceanicola
batsensis HTCC2597]
Length = 474
Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats.
Identities = 132/490 (26%), Positives = 233/490 (47%), Gaps = 39/490 (7%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
T+ + + LF + P +A ++ V ++++ +N+ ++++ V
Sbjct: 2 TYSSYLRAALFGMTLATGSFPVTAQAE----RLTIVNRNSESRLNVAINRAVVVESDVSF 57
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
++ +++P AD+ S ++Y+ GK G + L+ +G+ + N+D+++ DI+ +
Sbjct: 58 AELSIANPQIADISSLSDTSIYVLGKTPGITTLTLLDAEGRLISNVDVVVSADISEFKER 117
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
LR+ + D I V +D +V+ G+V + Q QRA++L+E + + ++V N
Sbjct: 118 LRQILPDEKIEVRTANDGIVMSGVVSSSQKLQRALDLAERY------------APERVSN 165
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------- 235
L+++ G QV LKV AE++R + K + + GS G + + G
Sbjct: 166 LMSVGGVQQVMLKVRFAEMQRSVSKSLSASLAADGSIFGGNVGVSGGTGRYSNAGNQGNG 225
Query: 236 -----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ G + +L ALE +RTLAEP LTA+SGQ A F +G
Sbjct: 226 LGGNLPTPNTNSGATLLGFNAGAVQVGVLLEALEAKGVVRTLAEPNLTALSGQEAKFLAG 285
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAG 346
G++ V+ G +V +GV ++F P V+ I L +Q VS NA
Sbjct: 286 GEYPVP-VAQDGGTVTVEFKPFGVEMNFIPRVVDDDIINLELQAAVSAIDPNNGFELNAF 344
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ ++ R+ TTVEL G + +AGLL+DD + +P L IP++GALFR++ + R
Sbjct: 345 RIDAFTRRETSTTVELRDGDSFAVAGLLQDDFRDTNSQVPWLGDIPVIGALFRSADYQRN 404
Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG--PKEASEVEGQN 464
++E+ I T LV P L+ P D + F F R K A EV Q+
Sbjct: 405 QSELVIIITAHLVSPTRGEALALPTDRVKPPSEKDLFLFGRTAKDTRKLRGAAKEVAKQD 464
Query: 465 YKGAIGFIYK 474
+ G+ G++ +
Sbjct: 465 FNGSYGYVME 474
>gi|126729098|ref|ZP_01744912.1| bacterial type II/III secretion system protein [Sagittula stellata
E-37]
gi|126710088|gb|EBA09140.1| bacterial type II/III secretion system protein [Sagittula stellata
E-37]
Length = 473
Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats.
Identities = 129/488 (26%), Positives = 225/488 (46%), Gaps = 38/488 (7%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
TF + L +A + P A++ + V G +S+ +N+ ++++
Sbjct: 2 TFDGYLKAALCGLALGIATMSPPAHADSIRV----VRTGTESVLSVPMNRAVVVESDTPF 57
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
++ +++P+ AD+ S RT+Y+ GK G + ++ G+ + N+D+ + D+ +
Sbjct: 58 AELSIANPSIADISSLSDRTIYVLGKQPGTTTLTILDPQGQLITNVDVRVAADVTEFKER 117
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L + + + I V +D +VL G V +I +RA++L++ + + +V N
Sbjct: 118 LTQILPEERIEVRTANDGIVLSGTVSSIARMERALDLAQRY------------APDRVSN 165
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------- 239
L+ + G QV LKV AE+RR + K + + GS+ G
Sbjct: 166 LMVVGGIQQVMLKVRFAEMRRSVSKALRASLATGGSTGDLGVELGTGNAGTLAERDLVAD 225
Query: 240 -------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
G +L ALE +RTLAEP LTA+SGQ ASF +GG+
Sbjct: 226 KLFPRRLGTEGAVLFGFNAGGLEVGILLEALESKGMVRTLAEPNLTALSGQEASFLAGGE 285
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDM 348
+ T T V +GV L F P V+ I L ++ VS +
Sbjct: 286 YPVPTAQGDNSVT-VEFKPFGVELAFVPRVIDGDLINLELEAAVSSVDSANGITFQDVTI 344
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
+ R+A TTVEL G + +AGLL+++ L +P + +PILGALFR++ + RE++
Sbjct: 345 AGFARREAKTTVELRDGESFAIAGLLQENFADLNGQVPWIGDVPILGALFRSTEYQREQS 404
Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN---KIYGPKEASEVEGQNY 465
E+ I TP LV P L+ P D ++ + + F +++ + A+EV Q++
Sbjct: 405 ELVIIVTPHLVTPTRGEALALPTDRVTLPSERQLFLNGKIDGNGRRPRSGAAAEVANQDF 464
Query: 466 KGAIGFIY 473
G+ G++
Sbjct: 465 NGSYGYVM 472
>gi|260574616|ref|ZP_05842619.1| type II and III secretion system protein [Rhodobacter sp. SW2]
gi|259023033|gb|EEW26326.1| type II and III secretion system protein [Rhodobacter sp. SW2]
Length = 470
Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats.
Identities = 138/492 (28%), Positives = 240/492 (48%), Gaps = 44/492 (8%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
R F+T L + L P+ ++ +E + + + LN+ ++++
Sbjct: 2 FMRNFWT---AGLLGLALATTALSPVAAQ-----SLRVMEGSASRALEVPLNRAVVVESD 53
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
V ++ +++P AD+ S +++Y+ GK G+ + L+G DG+ + N+++ + D+A
Sbjct: 54 VPFAELSIANPGIADISTLSDKSIYVLGKAPGRTTLTLLGPDGRLISNVEVQVSPDVAEF 113
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ LR+ + I V +D +VL G V + RA++L+E + + ++
Sbjct: 114 KERLRQILPGELIEVRTANDGIVLSGTVSSTAKLDRALDLAERY------------APER 161
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---------------- 227
V NL+++ G QV LKV AE++R + K + +I GS+ G +
Sbjct: 162 VSNLMSVGGTQQVMLKVRFAEMQRSVAKNLSASLAINGSTGGGNVGVNAGSGQFTAGGTR 221
Query: 228 -KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
FA + G ++ F +L ALE +RTLAEP LTA+SGQ A
Sbjct: 222 DGVFAGTSQSGADNSEGVATIGFSAGSLQFAVLLEALESKGVVRTLAEPNLTALSGQEAK 281
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-- 344
F +GG++ V+ +G+ SV +GV ++FTP V+ I L I VS V
Sbjct: 282 FLAGGEYPIP-VADGSGSISVEYKPFGVEMNFTPVVVDGDIINLTINAAVSSIDSTVTVQ 340
Query: 345 --AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ +++ R+ TTVE+ G + +AGLL+DD + L +P L IPILGALFR++
Sbjct: 341 NAGFTLNAFKRRETSTTVEMRDGESFAIAGLLQDDFRDLNGQVPWLGDIPILGALFRSAE 400
Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
+ R ++E+ I TP LV P L+ P D + + + F F + + G EV
Sbjct: 401 YQRAQSELVIIVTPHLVTPTRGEALALPTDRIRIPTERELFLFGKTSGARG--ATGEVAR 458
Query: 463 QNYKGAIGFIYK 474
Q++ G+ G++ +
Sbjct: 459 QDFSGSYGYVME 470
>gi|150398541|ref|YP_001329008.1| type II and III secretion system protein [Sinorhizobium medicae
WSM419]
gi|150030056|gb|ABR62173.1| type II and III secretion system protein [Sinorhizobium medicae
WSM419]
Length = 524
Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats.
Identities = 210/507 (41%), Positives = 308/507 (60%), Gaps = 37/507 (7%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
+ + S +L S ++ P + A+++V+ I + G K I++GLNK +++ +
Sbjct: 20 RFRASLAAGFSFWLIFSGMALPTAAPAEAASSSVVRIVNSGPGARKTINLGLNKAVVVDL 79
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
P D D+LV+DP+ AD + + R +YLFGK+VGQ N+ + G G+++++L++ +ERD+A
Sbjct: 80 PSDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVAG 139
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ------- 175
LE LRRFI D++I+VE++SD VVL G VRT DS RAV+L+ FL
Sbjct: 140 LESNLRRFIPDADIKVEIISDNVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQG 199
Query: 176 --------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
+ S +++NLL I G+DQVTLKVT+AEV R +LKQ+GF ++ SG S
Sbjct: 200 NNGDADIFAEDRQSSQIVNLLTIEGDDQVTLKVTVAEVSRQVLKQLGFNGRVSDGESGIS 259
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
A+ G + G + +KG + + + ++A+E+A +RTLAEP+LTAISGQ A F
Sbjct: 260 FRNPANLG-DMIGIGTNALIKGSIGGTTISSYINAMEQAGVMRTLAEPSLTAISGQEAKF 318
Query: 288 TSGGQH---------LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
GG+ +T V +YG+ L+F P VL PGRI L+I+T+VSE
Sbjct: 319 YVGGEFRLAGVQEVSTDDDSGETTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVSE 378
Query: 339 PV------IGVNAGDMPS-----YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
P G ++P R R+A T+VELPSGG+IV+AGL++D+I+Q G+P
Sbjct: 379 PTYEGSVVTGNGTVNIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLPA 438
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
SKIPILG LFR+ F R ETE+ I ATP+LV+PVA +SRPDD+++ +D ++FF R
Sbjct: 439 ASKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISRPDDNFNPANDLESFFLGR 498
Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474
VN+IYG EA G+ Y G +GFIYK
Sbjct: 499 VNRIYGRAEAQPPAGR-YHGNVGFIYK 524
>gi|114764946|ref|ZP_01444119.1| bacterial type II/III secretion system protein [Pelagibaca
bermudensis HTCC2601]
gi|114542658|gb|EAU45682.1| bacterial type II/III secretion system protein [Roseovarius sp.
HTCC2601]
Length = 471
Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats.
Identities = 132/455 (29%), Positives = 227/455 (49%), Gaps = 32/455 (7%)
Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
++ V G +S+ +N+ ++++ ++ +++P AD+ S RT+Y+ GK G
Sbjct: 29 SLRVVRTGTESVLSVPMNRAVVVESDRPFAELSIANPAIADISSLSDRTIYVLGKTPGTT 88
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
+ ++ +G+ + N+D+ + D+ + LR+ + + I V +D +VL G + + Q
Sbjct: 89 TLTILDANGRLITNVDVRVAADVTEFKERLRQILPNEPIEVRTANDGIVLSGTISSAQKL 148
Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
QRA++L+E + + ++V NL+ + G QV LKV AE++R + K +
Sbjct: 149 QRALDLAERY------------APERVSNLMTVGGVQQVMLKVRFAEMQRSVAKNLRSSL 196
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGD------------FSVKGVLDRFSFETVLHALER 265
S+TG+ G ++ A G + + G+ F + +L ALE
Sbjct: 197 SVTGTLFGNDETTLASETGTLIGQSGNTSINVNDDAEGAFLLGFNSGALQVGILLEALES 256
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
RTLAEP LTA+SGQ A F +GG++ VS G T V+ +GV L+F P V+
Sbjct: 257 KGISRTLAEPNLTALSGQEARFLAGGEYPVP-VSQDDGTTIVSYKPFGVELNFVPRVVDG 315
Query: 326 GRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
I L ++ VS + ++R R+ TTVE+ G + +AGLL+DD + L
Sbjct: 316 DLINLELEAAVSSIDSSNGITTGEITIDAFRRRETSTTVEMRDGESFAIAGLLQDDFRDL 375
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
+P L IP+LGALFR++ + RE++E+ I TP LV P L+ P D +
Sbjct: 376 NGQVPWLGDIPVLGALFRSAEYEREQSELVIIVTPHLVTPTRGEVLALPTDRVRPPTEKD 435
Query: 442 AFFFNRV---NKIYGPKEASEVEGQNYKGAIGFIY 473
F + R + A+EV Q++ G+ G++
Sbjct: 436 LFLYGRTASDTRRPQSGGAAEVAKQDFTGSYGYVM 470
>gi|222147182|ref|YP_002548139.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734172|gb|ACM35135.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 525
Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats.
Identities = 213/522 (40%), Positives = 299/522 (57%), Gaps = 51/522 (9%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLP----------PIKEANAAVINISDVEIGKGKKI 50
MR F MM S S++ LP + +++ I+ G + +
Sbjct: 7 MRLSSARLFRMMITGSLSLGLSISGLPGENMLVWRADALAAGAQSLVRIAQTGPGVRRDL 66
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
+GLNK I++ +P D D+LV+DP AD V + R +YLFGK VGQ N+ + G DG++++
Sbjct: 67 KLGLNKAIVVDLPEDAHDILVADPELADAVTRTSRRIYLFGKKVGQTNIFIFGADGREIV 126
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
+LD+ IERDI L+ L RFI +SNI+VE++SD VVL G VRT QDS RAV L++ FL
Sbjct: 127 SLDLQIERDIEGLQTNLSRFIPESNIKVEIISDNVVLSGTVRTPQDSSRAVSLAKAFLQG 186
Query: 171 SGRNQYANSSSKK------------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+++ ++N+L I GEDQVTLKVT+AEV R +LKQ
Sbjct: 187 GEATTRGETATSNSSGDGAVAIYAEDRQTSQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQ 246
Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
+G S T +SG S + ++ G GG ++ F ++A+E+A +RTL
Sbjct: 247 LGVSASATDGTSGISYANPSNLGNSVD-VGGTATISKTFGSFGISAYVNAMEQAGVMRTL 305
Query: 273 AEPTLTAISGQSASFTSGGQH---------LYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
AEP+LTAISG+ A F GG++ T T + + +T DYG+ L+F P VL
Sbjct: 306 AEPSLTAISGEQAKFYVGGEYRLAAGQEISTDSTTGQKTVSRTTSTVDYGIQLNFRPVVL 365
Query: 324 SPGRIGLRIQTEVSEPV-----------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
SPGRI L I+T VSEP + S R R+A TTVELPSGG+IV+AG
Sbjct: 366 SPGRISLAIETNVSEPTYEGSVVEGNSDSSIPGSTYLSIRKREASTTVELPSGGSIVIAG 425
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
L++D+++Q G+P +SKIPI G LFR+ F R ETE+ I ATP+LV+PV L+RPDD
Sbjct: 426 LVQDNVRQAMSGLPGISKIPIFGTLFRSKDFVRNETELVIIATPYLVRPVTRNALARPDD 485
Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
+++ D +F NRVNK+YG KEA+ Y G +G+IYK
Sbjct: 486 NFNPAGDGAMYFLNRVNKVYGRKEAT--ANGAYHGTVGYIYK 525
>gi|163745846|ref|ZP_02153205.1| bacterial type II/III secretion system protein [Oceanibulbus
indolifex HEL-45]
gi|161380591|gb|EDQ05001.1| bacterial type II/III secretion system protein [Oceanibulbus
indolifex HEL-45]
Length = 478
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 127/488 (26%), Positives = 222/488 (45%), Gaps = 35/488 (7%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
+ L L ++A + V+ G + + +N+ ++++ +
Sbjct: 3 IDRFLKAALLGLTLGAMPLALTLPSSAGADTLRVVKRGTNSSLDVPMNRAVVVESDIPFA 62
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
++ +++P AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ + L
Sbjct: 63 ELSIANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAGGQLITNVDVRVAADVSEFKERL 122
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
R+ + I V +D +VL G+V + Q QRA++L+E + + ++V NL
Sbjct: 123 RQILPGEKIEVRTANDGIVLSGIVSSTQRLQRALDLAERY------------APERVSNL 170
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------GSSSGPSKSFAADFGG 236
+++ G QV +KV AE++R++ K +G +I S+ S A+ GG
Sbjct: 171 MSVGGIQQVMMKVRFAEMQRNVSKSLGSSLAINGAIGGTGINGGTGSTNSSGGVASSLGG 230
Query: 237 KFVS---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
S G +L ALE +R LAEP L A+SGQ A F +GG++
Sbjct: 231 TIPSSNQNAGAVLFGFNAGSTQVGILLEALEEKGVVRFLAEPNLVALSGQEAKFLAGGEY 290
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDM 348
V+ + +V +GV L F P V+ I L + VS N ++
Sbjct: 291 PVP-VAQTGDTIAVEFKPFGVELAFIPRVVDKDIINLEMNAAVSAIDGSNSIALGNGIEI 349
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
++ R+ TTVE+ G + +AGLL DD +P + +P+LGALFR++ + R +T
Sbjct: 350 SAFTRRETSTTVEMRDGESFAIAGLLTDDFTDSTRQLPWIGDVPVLGALFRSADYQRSQT 409
Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV---NKIYGPKEASEVEGQNY 465
E+ I T LV P L P D + F R + A EV Q++
Sbjct: 410 ELVIIVTAHLVTPTRSEALVLPTDRIKPPSEKDLFLHGRTADGTRTPTRGAAGEVAKQDF 469
Query: 466 KGAIGFIY 473
+G+ G++
Sbjct: 470 RGSYGYVL 477
>gi|260431084|ref|ZP_05785055.1| bacterial type II/III secretion system protein [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414912|gb|EEX08171.1| bacterial type II/III secretion system protein [Silicibacter
lacuscaerulensis ITI-1157]
Length = 452
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 130/466 (27%), Positives = 211/466 (45%), Gaps = 31/466 (6%)
Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
A A + + G + + + +N+ I+++ ++ +++ AD+ S
Sbjct: 1 MSPAGYDAARAENLRVVKK--GTAETLDVPMNRAIVVESETPFAELSIANAGIADISSLS 58
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
RT+Y+ GK G + L G + N+ + + D+ + LR+ + + I V +D
Sbjct: 59 DRTIYVLGKAPGLTTLTLFDGAGNLIANVRVRVAPDVTEFKERLRQILPNERIEVRTAND 118
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
+VL G V + RA+EL+E + + ++V NL+N+ G QV LKV A
Sbjct: 119 GIVLSGTVSSSAKLARALELAERY------------APERVSNLMNVGGVQQVMLKVRFA 166
Query: 204 EVRRDILKQIGFQHSITGS-------SSGPSKSFAADFGGKFV---SEGGDFSVKGVLDR 253
E+ R + K + GS S S S + G S G
Sbjct: 167 EMNRSVAKSLSASLGFGGSDVTGGINSLNNSFSLSNALGNNIPVSQSNTGAILFGFGAGS 226
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+L ALE R+LAEP L+A+SGQ A+F +GG+ V G ++ +G
Sbjct: 227 TQVRLLLEALEAKGLARSLAEPNLSALSGQEATFLAGGEVPIP-VPQDDGVVAIEYKSFG 285
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIV 369
V + F P V+ I L + VS +N +PS+ R+ TTVEL G +
Sbjct: 286 VEIDFIPRVVDGDLINLEMAASVSAIDTSSDFTINGDSVPSFVTRQTSTTVELRDGESFA 345
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
+AGL++DD L IP L +P+LGALFR++ + RE++E+ I T LV P L+
Sbjct: 346 IAGLIQDDFTDLSNQIPWLGDVPVLGALFRSAEYQREQSELVIIITAHLVSPTRGEALAL 405
Query: 430 PDDHYSVEDDAKAFFFNRVNKIY--GPKEASEVEGQNYKGAIGFIY 473
P D + F RV++ G ASEV Q++ + G++
Sbjct: 406 PTDRVKPPSEFDLFLNGRVSRTERAGNGAASEVANQDFGSSYGYVL 451
>gi|254487886|ref|ZP_05101091.1| bacterial type II/III secretion system protein [Roseobacter sp.
GAI101]
gi|214044755|gb|EEB85393.1| bacterial type II/III secretion system protein [Roseobacter sp.
GAI101]
Length = 486
Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats.
Identities = 130/489 (26%), Positives = 223/489 (45%), Gaps = 36/489 (7%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++ LF L + V G + + + +N+ ++++ +
Sbjct: 10 IDRFITAALFGLTICAMPLALAAPTAVQADTLRVVNRGTNRALEVPMNRAVVVESDIPFA 69
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
++ +++P AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + DI+ + L
Sbjct: 70 ELSIANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAAGQLITNVDVRVASDISEFKERL 129
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
R+ + I V +D +VL G+V + Q QRA++L+E + + ++V NL
Sbjct: 130 RQILPGEKIEVRTANDGIVLSGIVSSTQGLQRALDLAERY------------APERVSNL 177
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQ----------IGFQHSITGSSSGPSKSFA-----A 232
+++ G QV LKV AE++R + K +G +I G ++ + S A
Sbjct: 178 MSVGGIQQVMLKVRFAEMQRSVSKSLSASLALNGLLGSDLAINGGTNTTNGSTAIANSLN 237
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
S G +L ALE+ A+R LAEP L A+SGQ A+F +GG+
Sbjct: 238 GSTPTTNSNAGAVLFGFNAGSTQVGLLLEALEQKGAVRFLAEPNLVALSGQEATFLAGGE 297
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGD 347
+ S SV +GV + F P V+ I L ++ VS N D
Sbjct: 298 YPVPVSQSGD-RISVEYKPFGVEMSFIPRVVDKNLINLELKAAVSAIDPSNSVSLGNGFD 356
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ ++ R+ TTVE+ G + +AGLL DD +P + +P+LGALFR++ + R +
Sbjct: 357 ISAFTRRETSTTVEMRDGESFAIAGLLTDDFTDTSRQLPWIGDVPVLGALFRSANYQRSQ 416
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN---KIYGPKEASEVEGQN 464
TE+ I T LV P L+ P D + + F R + K A EV Q+
Sbjct: 417 TELVIIITAHLVTPTRGDALALPTDRIKPPTENELFLSGRTSSGGKAPTRGAAGEVAKQD 476
Query: 465 YKGAIGFIY 473
+ G+ G++
Sbjct: 477 FSGSYGYVL 485
>gi|254510970|ref|ZP_05123037.1| bacterial type II/III secretion system protein [Rhodobacteraceae
bacterium KLH11]
gi|221534681|gb|EEE37669.1| bacterial type II/III secretion system protein [Rhodobacteraceae
bacterium KLH11]
Length = 476
Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats.
Identities = 129/483 (26%), Positives = 221/483 (45%), Gaps = 33/483 (6%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
T + +S L + V+ + A N+ V+ G + + + +N+ I+++
Sbjct: 10 TIRSWISATLLGLSLVVSPIGDAAWAQ----NLRVVKKGTAESLDVPVNRAIVVESEQPF 65
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
D+ +++ AD+ S RT+Y+ G+ G + + G + N+ + + D+ +
Sbjct: 66 ADISIANAGIADISTLSDRTIYVLGRAPGITTLTMFDGAGNLITNVRVRVSPDVTEFKER 125
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
LR+ + + I V +D +VL G V + RA+EL+E + + ++V N
Sbjct: 126 LRQILPNEQIEVRTANDGIVLSGTVSSSARLARALELAERY------------APERVSN 173
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----------SSSGPSKSFAADFGG 236
LLN+ G QV LKV AE+ R + K + G ++ G + A+
Sbjct: 174 LLNVGGVQQVMLKVRFAEMNRSVAKNLSASLGFGGGDATGGFNSLNNQGALNNALANNIP 233
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ G +L ALE +R+LAEP L+A+SGQ A F +GG+
Sbjct: 234 FVQTNSGAVLFGFGAGSTQVRLLLEALETKGLVRSLAEPNLSALSGQEAEFLAGGEVPIP 293
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYR 352
V G ++ +GV L F P V+ I L + VS +N +PS+
Sbjct: 294 -VPQGDGVVAIEYRQFGVQLLFVPRVVDGNLINLELGASVSSIDQSSDFTINGDSVPSFI 352
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R+ TT+EL G + +AGL++DD L +P L +P+LGALFR++++ RE++E+ I
Sbjct: 353 TRQTRTTIELRDGESFAIAGLIQDDFTDLNTQVPWLGDVPVLGALFRSAQYQREQSELII 412
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY--GPKEASEVEGQNYKGAIG 470
T LV P L+ P D + F +V + G ASEV Q++ + G
Sbjct: 413 IITAHLVSPTRGEALALPTDRVKPPSEFDLFVNGKVARTERAGNGAASEVAKQDFGTSYG 472
Query: 471 FIY 473
++
Sbjct: 473 YVL 475
>gi|92116013|ref|YP_575742.1| type II and III secretion system protein [Nitrobacter hamburgensis
X14]
gi|91798907|gb|ABE61282.1| type II and III secretion system protein [Nitrobacter hamburgensis
X14]
Length = 486
Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats.
Identities = 172/486 (35%), Positives = 269/486 (55%), Gaps = 28/486 (5%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
LQ +S ++ L P+ ++ V + + +S+G+ K +++ +P
Sbjct: 10 LQAIVARSLSFAAIAAFTLNPALTPVFASDYRVPAATAGAKMHAQSLSLGIGKSVVVDLP 69
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
DV+DVLV+DP A+ VV S + Y+ G VGQ N+I G+Q+ DI + RD+ L
Sbjct: 70 RDVKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDGSGQQISAYDIAVTRDLNGL 129
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
L++ + +++I+++ + D VVL G ++ +SQ+A +L+ + K
Sbjct: 130 RAALKQILPNADIKIDGLGDGVVLSGWAQSPVESQQAADLAARLAGG----------ADK 179
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------- 235
V+N + + G DQV LKV +AEV+RDI+KQ+G S S +F
Sbjct: 180 VVNSIAVRGRDQVMLKVVVAEVQRDIIKQLGVDLSANLSYGTAVVNFNNSNPFLATGSAL 239
Query: 236 --GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
G V G S+ + + + L A+E + IRTLAEP+LTAISG+SA+F +GG+
Sbjct: 240 VPGNSVVGGFGKSIINGVTMPTVQATLRAMENSGVIRTLAEPSLTAISGESANFLAGGEF 299
Query: 294 LYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAG 346
+ S T +VT +G+ L+FTP VLS GRI LR+ TE SE I ++
Sbjct: 300 PIPSGVSCTNGTCTPTVTFKKFGISLNFTPVVLSEGRISLRVATEASEVNNENAIQISGT 359
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+PS + R+ADTT+E+PSGG++V+AGL+K +Q G+P +S+IP+LG LFR+ +
Sbjct: 360 AVPSIKTRRADTTLEIPSGGSMVMAGLIKQQTKQSISGMPGVSQIPVLGTLFRSRDYVNN 419
Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
TE+ I TP++V+ VA +DLSRPDD ++ D +A +N+IYG +E Q Y+
Sbjct: 420 NTELMILVTPYVVRAVAQKDLSRPDDGFADASDPQADLLGSINRIYGVPGRAEPARQ-YR 478
Query: 467 GAIGFI 472
G GFI
Sbjct: 479 GTYGFI 484
>gi|85859139|ref|YP_461341.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB]
gi|85722230|gb|ABC77173.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB]
Length = 503
Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats.
Identities = 134/509 (26%), Positives = 229/509 (44%), Gaps = 49/509 (9%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKL-PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
R + F+ S+A AA + V + +K+++ + K I++ P
Sbjct: 1 MRPCPGLKVHFVACCLISIALCFLIALPCVAAGPDRVVVNTSRPQKLTLTVGKSTIVECP 60
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+++ V ++ P AD++ SPR +YL GK G N+ L D M +D+ + D+ L
Sbjct: 61 QNLKRVSIAAPDYADILTLSPRQIYLTGKMAGNTNLTLWRSDNSVMSVIDVEVLPDVVGL 120
Query: 124 EMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
+ + + D +IRV D + L G V + + + + L+ ++ + +
Sbjct: 121 KEKIHSMMPDEKDIRVTATPDAITLSGTVSSAANMNQVMSLANSYAPK------GKDKTG 174
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228
V N L + G QV L+V ++E+ R ++K++G +
Sbjct: 175 GVNNFLEVGGVHQVMLEVRVSEMSRSLIKKLGINWNYLSEGGNTFGMSMLDNLTYTVSPS 234
Query: 229 ------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
S A G VS + + ++ + A++ ++ LAEPT
Sbjct: 235 DANIQPMTHLSASEGAVSVGTLVSSSVGLAFRFFGGGATWTLFIDAMKDQGLLKVLAEPT 294
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
L +SG++ASF +GG+ ++ +GV L+FTPTVLS +I +++ EV
Sbjct: 295 LLTLSGKTASFLAGGEFPIPVPQEEN--ITIEYKPFGVGLNFTPTVLSNKKISMQVSPEV 352
Query: 337 SEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
S+ + V +PS R+ TTVEL G + +AGLLKDDI+Q+ +PLL IP
Sbjct: 353 SDLDYTNAVAVGGYAVPSITTRRVATTVELADGQSFAIAGLLKDDIRQIVRKVPLLGDIP 412
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
+LG+LFR+S+F + ETE+ I TP LVKP+ M + P D Y +D + + +
Sbjct: 413 VLGSLFRSSQFRKNETELVIIVTPRLVKPLDMTKQTLPTDQYVEPNDFEFYLLGSLEGKG 472
Query: 453 GPKEASEVE---------GQNYKGAIGFI 472
A+ +G G+I
Sbjct: 473 ENDSATPTPVSSALPGDKTGGLEGDFGYI 501
>gi|325291659|ref|YP_004277523.1| component of type IV pilus [Agrobacterium sp. H13-3]
gi|325059512|gb|ADY63203.1| component of type IV pilus [Agrobacterium sp. H13-3]
Length = 527
Score = 354 bits (907), Expect = 2e-95, Method: Composition-based stats.
Identities = 207/494 (41%), Positives = 302/494 (61%), Gaps = 41/494 (8%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+P+ ++ + +A+++ I++ G K++ +GLNK +++ +P D D+LV+DP+ AD
Sbjct: 36 SPAFLRISEAEAQSASIVRITESGSGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADA 95
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V + + +YLFGK VGQ N+ + G G+++++LD+ +ERDI+ LE +RRFI +S+I+VE
Sbjct: 96 VTRTSKRIYLFGKTVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVE 155
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-----------------YANSSSK 182
+VSD +VL G VRT QDS RAV+L+E FL N +
Sbjct: 156 IVSDNIVLTGSVRTPQDSARAVQLAEAFLKGGEATTRNISLTGGNNGGDAAIFAENRQTS 215
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA--ADFGGKFVS 240
+++N+L I GEDQVTLKVT+AEV R +LKQ+GF SI+ S+S F+ ++ G
Sbjct: 216 QIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSISSSTSNNGFEFSNPSNLGNAISG 275
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---- 296
S +F + L+A+E+A +RTLAEP+LTAISG+ A F GG
Sbjct: 276 ASRIASGAIGSGSLNFASYLNAMEQAGVVRTLAEPSLTAISGEQAKFYVGGDFRLPAEQE 335
Query: 297 -----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------- 344
T + T DYG+ L+F P VLSPGRI L+I+T VSEP N
Sbjct: 336 VTIDKDTGQPTITRTTNTVDYGITLNFRPVVLSPGRISLKIETNVSEPTYEGNVVTGNAG 395
Query: 345 ----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
S R R+ TTVELPSGG+IV+AGL++D+I+Q G+P +SK+PI G LFR+
Sbjct: 396 RTIPGSTYMSIRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGISKVPIFGTLFRS 455
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
F R ETE+ I ATP+LV+PVA ++RPDD+++ E+DA +F NRVNK+YG K+ V
Sbjct: 456 KDFIRNETELVIIATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNKVYGRKDQ--V 513
Query: 461 EGQNYKGAIGFIYK 474
+ Y+G++GFIYK
Sbjct: 514 QAAPYQGSVGFIYK 527
>gi|153008059|ref|YP_001369274.1| type II and III secretion system protein [Ochrobactrum anthropi
ATCC 49188]
gi|151559947|gb|ABS13445.1| type II and III secretion system protein [Ochrobactrum anthropi
ATCC 49188]
Length = 507
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 192/509 (37%), Positives = 285/509 (55%), Gaps = 37/509 (7%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKE-ANAAVINISDVEIGKGKKISIGLNKVII 59
MR +R + L +S + LP A AA + + + I +GLNK ++
Sbjct: 1 MRKTKRVRPYSAKVALLTSALAAFSLPLTDMSAMAAAGVVKVGSQQRSQTIKLGLNKSVV 60
Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
L +P D DVLVS+PT AD V + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IERD
Sbjct: 61 LDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGPNGEQVASIDVEIERD 120
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA-- 177
++ + L+R I S+IRVE+++D VVL G V+T QDS +A +L+ F+S
Sbjct: 121 VSGISSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQFT 180
Query: 178 -------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
N + ++N+L I GEDQVTLKVT+AEV R ++KQ+G +
Sbjct: 181 TTASAPTDGGGVAINNPDRNRRASAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVNMA 240
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+G S+G S ++ + + G+ +F L A+E A ++TLAEPTLT
Sbjct: 241 GSGVSNGISYGGISESIAGAIGNNLSDTGFGLATS-NFSAYLRAMESAGVMKTLAEPTLT 299
Query: 279 AISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
AISG+ A+F GG++ + +YG+ L F PTVL PGRI L+I+T
Sbjct: 300 AISGEKAAFNVGGEYNVINSVKYDDDGKRTNELAKINYGIGLEFMPTVLGPGRISLKIRT 359
Query: 335 EVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
VSEP + S R R ADTTVELPSGG++++ GL++D+++Q G
Sbjct: 360 SVSEPTTEGAGTTNKMDGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGF 419
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
P L+KIP+LGALFR+ F R E+E+ + TP+L +PVA + L+RPDD+ + D +
Sbjct: 420 PGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDNLNPASDGAGYIL 479
Query: 446 NRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
+VN++YG E G+ Y G +G+IYK
Sbjct: 480 GKVNRVYGTMETKLPPGR-YNGVVGYIYK 507
>gi|83943939|ref|ZP_00956396.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
EE-36]
gi|83954512|ref|ZP_00963223.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
NAS-14.1]
gi|83840796|gb|EAP79967.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
NAS-14.1]
gi|83845186|gb|EAP83066.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
EE-36]
Length = 479
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 123/486 (25%), Positives = 224/486 (46%), Gaps = 36/486 (7%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
+ L +A + V+ G + + + +N+ ++++ + ++
Sbjct: 6 FIKAALLGLTIGAMPFALTAPIDAQANTLRVVKKGTNRVLEVPMNRAVVVESDIPFAELS 65
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
+++P AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ + LR+
Sbjct: 66 IANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAAGQLITNVDVRVAADVSEFKERLRQI 125
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ I V +D +VL G+V + Q QRA++L+E + + ++V NL+++
Sbjct: 126 LPGEKIEVRTANDGIVLSGIVSSTQRLQRALDLAERY------------APERVSNLMSV 173
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFG 235
G QV +KV AE+ R + K + ++ G +++G +
Sbjct: 174 GGIQQVMMKVRFAEMSRSVSKSLSASLALNGLVGNDLAINGGTNTTNTAGAIANSLGGTT 233
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
S G +L ALE+ A+R LAEP L A+SGQ A+F +GG++
Sbjct: 234 PASNSNAGAVLFGFNAGSTQVGLLLEALEQKGAVRFLAEPNLVALSGQEATFLAGGEYPV 293
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPS 350
V+ + SV +GV + F P V+ I L ++ VS N D+ +
Sbjct: 294 P-VAQTGDQISVQYKPFGVEMSFIPRVVDKDLINLELKAAVSAIDASNSVSLGNGFDISA 352
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ R+ TTVE+ G + +AGLL DD +P + +P+LGALFR++ + R ++E+
Sbjct: 353 FTRRETSTTVEMRDGESFAIAGLLTDDFTDNSSQLPWIGDVPVLGALFRSANYQRSQSEL 412
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK---EASEVEGQNYKG 467
I T LV P L+ P D +++ F R +K A EV Q++ G
Sbjct: 413 VIIITAHLVTPTRGEALALPTDRIKPPTESELFLSGRTSKGSTAPTKGAAGEVAKQDFSG 472
Query: 468 AIGFIY 473
+ G++
Sbjct: 473 SYGYVL 478
>gi|254440636|ref|ZP_05054129.1| Putative phospholipid-binding domain family [Octadecabacter
antarcticus 307]
gi|198250714|gb|EDY75029.1| Putative phospholipid-binding domain family [Octadecabacter
antarcticus 307]
Length = 474
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 135/489 (27%), Positives = 223/489 (45%), Gaps = 39/489 (7%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
T+ + L LP +A + +++ +N+ ++++ V
Sbjct: 2 TYDRFLKATLTGLAIMFTNLPVQLQAETLRVMRG----APSSALNVPMNRAVVVESDVPF 57
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
++ +++P+ AD+ S RT+Y+ GK G+ + L+G DG+ + N+++ + DIA +
Sbjct: 58 TELSIANPSIADISSLSDRTIYVLGKEPGRTTLTLLGGDGRLITNVEVHVTPDIAEFKER 117
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L + + NI V +D +VL G V +I RA+EL+ + + +V N
Sbjct: 118 LEQILPGENIEVRTANDGIVLSGTVSSIARLDRALELANRY------------APDRVSN 165
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------------SSGPSKSF 230
L+++ G QV L+V AE++R + K + ++ GS + S
Sbjct: 166 LMSVGGTQQVMLRVRFAEMQRSVSKSLSSSLALGGSTLGGDLGLALGTGATVGNTGRLST 225
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ G F +L ALE +RTLAEP LTA+SGQ ASF +G
Sbjct: 226 LSGATPANNDNAGAFLFGFNAGGVEVGILLEALENRGVVRTLAEPNLTALSGQEASFLAG 285
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAG 346
G++ + T V +G+ L FTP V+ I L + VS N
Sbjct: 286 GEYPVPISQDGSAIT-VEYKPFGISLSFTPRVIDGDIINLELHASVSSLDPTNGFSQNGF 344
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ ++R R+ TTVE+ G + +AGLL DD L +P IP+LGALFR++ ++R+
Sbjct: 345 SIDAFRTRETSTTVEMRDGESFAIAGLLSDDFVDLSGQVPWAGDIPVLGALFRSAEYSRQ 404
Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV--NKIYGPKEASEVEGQN 464
+TE+ I TP LV P L+ P D + F F RV A EV Q+
Sbjct: 405 QTELVIIVTPHLVTPTRGDALALPTDRVRPPTERDLFLFGRVTAEDAPQSGGAGEVARQD 464
Query: 465 YKGAIGFIY 473
+ G+ G++
Sbjct: 465 FSGSYGYVL 473
>gi|110679396|ref|YP_682403.1| type II/III secretion system protein, putative [Roseobacter
denitrificans OCh 114]
gi|109455512|gb|ABG31717.1| type II/III secretion system protein, putative [Roseobacter
denitrificans OCh 114]
Length = 463
Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats.
Identities = 123/471 (26%), Positives = 218/471 (46%), Gaps = 22/471 (4%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
++ L SV+ + +A + + + +++ N+ ++++ + ++
Sbjct: 6 ILKAALLGLAISVSPIAFTAPLSAQAEALRIIARETSETLNVSQNRAVVVESEIPFAELS 65
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
+++P AD+ S R++Y+ GK G + L+ G+ + N+++ + D+ + LR+
Sbjct: 66 IANPGIADISSLSDRSIYVLGKVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKERLRQI 125
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ I V +D +VL G V + Q +A+EL+ + + +V NL+ +
Sbjct: 126 LPGEAIEVRTANDGIVLSGQVSSSQRLSKALELAARY------------APDRVSNLMTV 173
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSFAADFGGKFVSEGGDFSVK 248
G QV LKV AE+ R + KQ+ I GS +G + S G
Sbjct: 174 GGVQQVMLKVRFAEMSRGVSKQLQSSLRIGGSDAQAGIGRGIGGIPNLAADSAQGAVFFD 233
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
L + +L ALE A+RTLAEP L ++SGQ A+F +GG++ S SV
Sbjct: 234 FGLGSTQVQLLLEALETKGAVRTLAEPNLVSLSGQEANFLAGGEYPVPV--QSEDGISVD 291
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELP 363
+G+ L+F P V+ I L++ S + ++ R+A TTVE+
Sbjct: 292 FKPFGIELNFVPRVVDGDLINLQLSAATSSIDPSNGISVGDGFTVDAFIRREASTTVEMR 351
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
G + +AGLL+D+ +P +S +PILGALFR++ + R +TE+ I T LV P
Sbjct: 352 DGESFAIAGLLEDNFNDNITQVPWISDVPILGALFRSTDYMRNQTELVIIITAHLVTPTR 411
Query: 424 MRDLSRPDDHYSVEDDAKAFFFNR-VNKIYGPKEASEVEGQNYKGAIGFIY 473
L+ P D + F R + + A EV Q++ G+ G++
Sbjct: 412 GEALALPTDRIRPPSEKDLFLNGRTIETLNARGSAGEVAKQDFSGSYGYVM 462
>gi|239833237|ref|ZP_04681566.1| type II and III secretion system protein [Ochrobactrum intermedium
LMG 3301]
gi|239825504|gb|EEQ97072.1| type II and III secretion system protein [Ochrobactrum intermedium
LMG 3301]
Length = 507
Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats.
Identities = 192/509 (37%), Positives = 281/509 (55%), Gaps = 37/509 (7%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKE-ANAAVINISDVEIGKGKKISIGLNKVII 59
MR R I L + + LP A AA + + + I +GLNK ++
Sbjct: 1 MRKTNRVRPYSARIALLAGALATVSLPLADMTAMAAAGIVKVGSQQRSQTIKLGLNKSVV 60
Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
L +P D DVLVS+PT AD V + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IERD
Sbjct: 61 LDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGQNGEQVASIDVEIERD 120
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA-- 177
++ L L+R I S+IRVE+++D VVL G V+T QDS +A +L+ F+S
Sbjct: 121 VSGLSSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQYS 180
Query: 178 -------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
++N+L I GEDQVTLKVT+AEV R ++KQ+G +
Sbjct: 181 TTASAPTDGGGVAINNPDWGRRQSAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVNMT 240
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+G S+G S ++ + + G+ +F L A+E A ++TLAEPTLT
Sbjct: 241 GSGVSNGISYGGISENIAGAIGNNLSDTGFGLATS-NFSAYLRAMESAGVMKTLAEPTLT 299
Query: 279 AISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
AISG+ A+F GG++ + +YG+ L F PTVL PGRI L+I+T
Sbjct: 300 AISGEKAAFNVGGEYNVINSVTYDDDGKRTNQLAKINYGIGLEFMPTVLGPGRISLKIRT 359
Query: 335 EVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
VSEP + S R R ADTTVELPSGG++++ GL++D+++Q G
Sbjct: 360 SVSEPTTEGAGTTNKMEGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGF 419
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
P L+KIP+LGALFR+ F R E+E+ + TP+L +PVA + L+RPDD+ + D +
Sbjct: 420 PGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDNLNPASDGAGYIL 479
Query: 446 NRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
+VN++YG E G+ Y G +G+IYK
Sbjct: 480 GKVNRVYGTMETKLPPGR-YNGVVGYIYK 507
>gi|254463467|ref|ZP_05076883.1| bacterial type II/III secretion system protein [Rhodobacterales
bacterium HTCC2083]
gi|206680056|gb|EDZ44543.1| bacterial type II/III secretion system protein [Rhodobacteraceae
bacterium HTCC2083]
Length = 474
Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats.
Identities = 137/492 (27%), Positives = 230/492 (46%), Gaps = 42/492 (8%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
+ T+ + FL + A + P ++ G + I +N+ ++++ V
Sbjct: 1 MKKLNTLRAAFLGCAVLFTASVAPAHADTLRIVRS-----GSSSTLPIPMNRAVVVESDV 55
Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
++ +++P+ AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ +
Sbjct: 56 PFAELSIANPSIADISTLSDRTVYVLGKSPGLTTLTLLDDAGRLITNVDVRVSADVSEFK 115
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
LR+ + I V +D +VL G V + RA++L++ + + ++V
Sbjct: 116 ERLRQILPGEKIEVRTANDGIVLSGTVSSAGKVDRAMDLAQRY------------APERV 163
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------- 236
NLL+++G QV LKV AE++R + K + ++ GS+ G + S
Sbjct: 164 TNLLSVSGVQQVMLKVRFAEMQRSVSKSLSSSLALGGSALGGNLSVRGGTNTLASGAASS 223
Query: 237 --------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+ G +L ALE +RTLAEP LTA+SGQ A F
Sbjct: 224 AAIAGTAPANNANNGATLFGFNAGGLEVGILLEALESKGMVRTLAEPNLTALSGQEAKFL 283
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---- 344
+GG++ SSS + +GV L F P VL I L + EVS
Sbjct: 284 AGGEYPIPVQSSSG--VQIQFKPFGVQLAFIPRVLDDKVINLELNAEVSSLDAANGIVSD 341
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+ +VR+ TTVE+ G + +AGLL+DD L +P L IP+LGALFR++ +
Sbjct: 342 GFAISGLKVRRTSTTVEMRDGESFAIAGLLQDDFTDLSGQVPWLGDIPVLGALFRSADYK 401
Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV---NKIYGPKEASEVE 461
RE++E+ I TP LV P L+ P D S + F F RV ++ A+EV
Sbjct: 402 REQSELVIIVTPHLVTPTRGEALALPTDRISPPTEKDLFLFGRVTGDSRRPKKGAAAEVA 461
Query: 462 GQNYKGAIGFIY 473
Q++ G+ G++
Sbjct: 462 RQDFTGSYGYVM 473
>gi|149200847|ref|ZP_01877822.1| bacterial type II/III secretion system protein [Roseovarius sp.
TM1035]
gi|149145180|gb|EDM33206.1| bacterial type II/III secretion system protein [Roseovarius sp.
TM1035]
Length = 472
Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats.
Identities = 126/466 (27%), Positives = 213/466 (45%), Gaps = 35/466 (7%)
Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
+ A A I + +S+ +N+ ++++ ++ +++P AD S RT+
Sbjct: 21 APQPAQAESIRVVRNGTSSA--LSVAMNRAVVVESDSPFAELSIANPAIADFSTLSERTI 78
Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
Y+ GK G+ + L GK + N+D+ + DI + L++ + I V +D +V+
Sbjct: 79 YVLGKTPGRTTLSLFDGLGKLITNIDVHVSTDIEEFKERLKQILPGEPIEVRSANDGIVI 138
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + QRA++L+E + + ++V NL++++G+ QV LKV AE++R
Sbjct: 139 SGTVSSTSRMQRALDLAERY------------APERVSNLMSVSGKQQVMLKVRFAEMQR 186
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------------EGGDFSVKGVLD 252
+ K + SI + F+ +
Sbjct: 187 SVSKALSSSLSIDARGANSVGVIGGTNTTNTQGGVLGTLAGAIPGTNENNAAFAFGFDVG 246
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+L ALE +RTLAEP LTA+SGQ A F +GG+ V+ TS+ +
Sbjct: 247 SVEVGILLEALETKGVVRTLAEPNLTALSGQEAKFLAGGEFPVP-VAQDNDTTSIEFKPF 305
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTI 368
GV L+F P V+ G I L + VS N +P++R R TTV L G +
Sbjct: 306 GVELNFVPRVVDDGIINLEMAAAVSSIDTANSLVSNGFAIPAFRRRDTSTTVALRDGESF 365
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
+AGLL+DD + +P L +P+LGALFR++ + R +TE+ I + LV P L+
Sbjct: 366 AIAGLLQDDFRDNAGQVPWLGDVPVLGALFRSADYQRSQTELVIIVSAHLVSPSRGEALA 425
Query: 429 RPDDHYSVEDDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAIGFIY 473
P D + + F RV + + EV Q++ G+ G++
Sbjct: 426 LPTDRVKLPSEKDLFLNGRVARGVSDKGPVGEVAKQDFTGSYGYVM 471
>gi|86137993|ref|ZP_01056569.1| bacterial type II/III secretion system protein [Roseobacter sp.
MED193]
gi|85825585|gb|EAQ45784.1| bacterial type II/III secretion system protein [Roseobacter sp.
MED193]
Length = 459
Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats.
Identities = 128/476 (26%), Positives = 226/476 (47%), Gaps = 32/476 (6%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
M+ L + +P + AN + V+ G + + +N+ ++++ ++ +
Sbjct: 1 MAAALTGLSLLSIAVPEMGLANGLRV----VKRGTSVTLDVPMNRAVVVESDDPFAELSI 56
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
++P AD+ S RT+Y+ GK+ G + L+ GK + N+++ + D++ + LR+ +
Sbjct: 57 ANPNIADISSLSDRTIYVLGKSPGLTTLTLLDASGKLITNVNVRVAADVSEFKERLRQIL 116
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
I V +D +VL G V + QRA++L+E + + ++V NL+++
Sbjct: 117 PGEQIEVRTANDGIVLSGNVSSAARLQRALDLAERY------------APERVSNLMSVG 164
Query: 192 GEDQVTLKVTIAEVRRDILKQI------GFQHSITGSSSGPSKSFAADFGGKFV----SE 241
G QV LKV AE++R + K + G Q+ +G G +
Sbjct: 165 GVQQVMLKVRFAEMQRSVSKALHSSVALGSQNGNASGETGQWLFGNNGLGNTPIEVKDGI 224
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G + + + +L ALE+ +RTLAEP L+A+SGQ A F +GG++
Sbjct: 225 AGALAFQFGVGSLQVGLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIPVSQDG 284
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKAD 357
T V +G+ L+F P V+ I L ++ VS + N + ++ R+
Sbjct: 285 GTVT-VEFKPFGIELNFIPRVVDGDVINLELKAAVSAIDTSNTVTANGLSIAAFSRRETS 343
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TTVEL G + +AGL++DD IP + +P+LGALFR++ + RE+TE+ I +
Sbjct: 344 TTVELRDGESFAVAGLVQDDFLDNTSQIPWIGDVPVLGALFRSADYQREQTELVIIVSAH 403
Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
LV P LS P D +++ F R ASEV Q++ G+ G++
Sbjct: 404 LVTPTRGEALSLPTDRIKPPSESELFLLGRTVHSQ-KGPASEVAKQDFNGSYGYVM 458
>gi|149915642|ref|ZP_01904168.1| bacterial type II/III secretion system protein [Roseobacter sp.
AzwK-3b]
gi|149810534|gb|EDM70377.1| bacterial type II/III secretion system protein [Roseobacter sp.
AzwK-3b]
Length = 467
Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats.
Identities = 127/479 (26%), Positives = 225/479 (46%), Gaps = 32/479 (6%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
+ L + +A N+ V G + +++ +N+ ++++ V ++
Sbjct: 6 LFKAALLGLAVVFSGFVTELQAE----NLQVVRNGAARDLNVTMNRAVVVESDVPFAELS 61
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
+++P+ AD S RT+Y+ GK G+ + L+ G+ + N++I + D++ + L++
Sbjct: 62 IANPSIADFSTLSDRTIYVLGKAPGRTTLTLLDDSGRLITNVEIHVSTDVSEFKERLQQI 121
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ + I V +D +VL G V + +RA+ L++ + + +V NL+ +
Sbjct: 122 LPNERIEVRTANDGIVLSGSVSSTARMERALSLAQRY------------APDRVSNLMVV 169
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF----------GGKFVS 240
AG QV LKV AE++R + KQ+ ++ + + A G +
Sbjct: 170 AGNQQVMLKVRFAEMQRSVSKQLSTSLAVDALGVSGNGAALAGSNLPSAGANRVGITANN 229
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G + +L ALE +RTLAEP LTA+SGQ A F +GG++ V+
Sbjct: 230 NAGVAFFGFDIGSVEIGILLEALETKGVVRTLAEPNLTALSGQEAKFLAGGEYPVP-VAQ 288
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKA 356
TS+ +GV L+F P V+ I L + VS A ++ ++R R
Sbjct: 289 DNNTTSIEFKPFGVELNFIPRVVDGDIINLEMAAAVSSIDPTNGINTGAFNVDAFRRRDT 348
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
TTV+L G + +AGLL+DD + +P L +PILGALFR++ + R +TE+ I +
Sbjct: 349 STTVQLRDGESFAIAGLLQDDFRDTNAQVPWLGDVPILGALFRSADYARAQTELVIIVSA 408
Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR-VNKIYGPKEASEVEGQNYKGAIGFIYK 474
LV P L+ P D + + F R +N A EV Q++ G+ G++ +
Sbjct: 409 HLVTPTRGEALALPTDRVRLPSEMDLFLNGRVLNSNIPSGTAGEVARQDFTGSYGYVME 467
>gi|222084469|ref|YP_002542998.1| pilus assembly secretion protein [Agrobacterium radiobacter K84]
gi|221721917|gb|ACM25073.1| pilus assembly secretion protein [Agrobacterium radiobacter K84]
Length = 505
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 219/487 (44%), Positives = 307/487 (63%), Gaps = 26/487 (5%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
F++ L + V + +A+ A ++ + + + +GLNK +++ +P D D
Sbjct: 24 FSVAFAGLPIAEAPVFLRTAVAKADGADSIVTISGLNTKRTLKLGLNKALVVDLPADAHD 83
Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
+LVSDP AD V + R +YLFGK VGQ N+ + G +G+++++LD+ IERDI+ L+ L+
Sbjct: 84 ILVSDPKMADAVTRTSRRIYLFGKTVGQTNIFVFGANGQEIVSLDLQIERDISGLQANLK 143
Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK------ 182
RFI DS+I VE+VSD +VL G VRT QDS RA +L+ FL ++S
Sbjct: 144 RFIPDSDINVEIVSDNIVLTGSVRTPQDSSRAQQLAGAFLKGGEATTRTETASGTGGDSS 203
Query: 183 -----------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+++NLL I GEDQVTLKVT+AEV+R +LKQIGF ++ +SSG + +
Sbjct: 204 VALFAEGRQTSQIVNLLQIEGEDQVTLKVTVAEVKRSVLKQIGFD-NLVSNSSGLTVAQL 262
Query: 232 ADFGGKFVSEGGDFSVKGVL----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
+ + G+ + + +++ + L+A+E+A A+RTLAEPTLTAISGQ+A+F
Sbjct: 263 GNISSDSTAATGNGGLSALFKTALGKYNVSSYLNAMEQAGAVRTLAEPTLTAISGQAATF 322
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
SGGQ LY V S G ++T + YG+ L FTP VLS GRI L +QT+VSEP A
Sbjct: 323 NSGGQTLYS-VIDSDGNVTITPYTYGISLAFTPVVLSAGRISLHVQTQVSEPTGTTGAAT 381
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
Y R ADT+VELPSGG+I LAGLL D++QQ G P SKIPILGALFR F R+E
Sbjct: 382 ---YNRRAADTSVELPSGGSIALAGLLSDNVQQSTTGTPGASKIPILGALFRQKTFQRDE 438
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
+E+ I ATP+LV+PVA ++RPDD++S +DA FF NRVNKIYG K+A V ++ G
Sbjct: 439 SELVIIATPYLVRPVARNQIARPDDNFSPTNDAGVFFMNRVNKIYGRKDAPPVADADFHG 498
Query: 468 AIGFIYK 474
+GFIYK
Sbjct: 499 TVGFIYK 505
>gi|99082186|ref|YP_614340.1| type II and III secretion system protein [Ruegeria sp. TM1040]
gi|99038466|gb|ABF65078.1| Hypothetical 443 kDa protein y4xJ [Ruegeria sp. TM1040]
Length = 497
Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats.
Identities = 124/461 (26%), Positives = 222/461 (48%), Gaps = 32/461 (6%)
Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
+ A IS ++ G + + +N+ ++++ V ++ +++P+ AD+ S RT+Y+
Sbjct: 50 PSPAVAQGISVLKKGTNAVLDVPMNRAVVVEADVPFAELSIANPSIADISSLSDRTIYVL 109
Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
GK+ G + L+ G + N+D+ + D++ + L++ + + I V +D +VL G
Sbjct: 110 GKSPGLTTLTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGT 169
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
V + Q QRA++L+E + + +V NL+ + G QV LKV AE+ R +
Sbjct: 170 VSSAQRLQRALDLAERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSVS 217
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------------GDFSVKGVLDRFSF 256
K +G I S + + GG G G + F
Sbjct: 218 KSLGGSMLIRSSDGAIATGSFQNRGGNGNIFGDSVTSPVQLQSETLGAALFGFDIGAVQF 277
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
+L ALE+ +RTLAEP L+A+SGQ A+F +GG++ V+ G +V +G+ L
Sbjct: 278 NVLLEALEQKGLVRTLAEPNLSALSGQEANFLAGGEYPVP-VAQEDGVITVEFKPFGIEL 336
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAG 372
+F P V+ I L ++ VS + + ++ R+ TTVEL G + +AG
Sbjct: 337 NFIPRVVDGDLINLELKAAVSAIDTTNSATFDGFSINAFSRRETATTVELRDGESFAIAG 396
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
L++D+ + +P L +P+LGALFR++ + R ++E+ I + LV P L+ P D
Sbjct: 397 LIEDEFRDGAAQVPWLGDVPVLGALFRSADYARNQSELVIIVSAHLVTPTRGEALALPTD 456
Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
+ F F + + A EV Q++ G+ G++
Sbjct: 457 RIRPPSEKNLFLFGQTERAQ-AGAAGEVANQDFNGSYGYLL 496
>gi|126737254|ref|ZP_01752989.1| bacterial type II/III secretion system protein [Roseobacter sp.
SK209-2-6]
gi|126721839|gb|EBA18542.1| bacterial type II/III secretion system protein [Roseobacter sp.
SK209-2-6]
Length = 446
Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats.
Identities = 125/462 (27%), Positives = 217/462 (46%), Gaps = 29/462 (6%)
Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
LP + A A + + G + + +N+ I+++ ++ +++P AD+ S
Sbjct: 1 MALPVAEPAQANGLRVVKQ--GTSITLDVPMNRAIVVESDAPFAELSIANPNIADISSLS 58
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
RT+Y+ GK+ G + L+ GK + N+++ + D++ + LR+ + I V +D
Sbjct: 59 DRTIYVLGKSPGLTTLTLLDGAGKLITNVNVRVAADVSEFKERLRQILPGEKIEVRTAND 118
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
+VL G V + QRA++L+E + + ++V NL+++ G QV LKV A
Sbjct: 119 GIVLSGTVSSSARLQRALDLAERY------------APERVSNLMSVGGVQQVMLKVRFA 166
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFS 255
E+ R + K + + S ++ G + G ++ F
Sbjct: 167 EMERSVSKTLSSSLAFGNSGDVIGETGTWLDGNNGLGNPVQVTQGTEGAVAISFGAGSFR 226
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
+L ALE+ +RTLAEP L+A+SGQ ASF +GG++ V + + +G+
Sbjct: 227 VGVLLEALEQKGIVRTLAEPNLSALSGQEASFLAGGEYPIPVVDADG--IGIEYKPFGIE 284
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLA 371
L F P V+ I L ++ VS N + + R TTVEL G + +A
Sbjct: 285 LDFIPRVVDQDVINLELEAVVSAIDPTTTVVQNGLTINGFTRRATSTTVELRDGESFAIA 344
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL++D+ +P + IPI+GALFR++ + RE+TE+ I + LV P L+ P
Sbjct: 345 GLVQDEFTDSNGQVPWVGDIPIIGALFRSASYQREQTELVIIVSAHLVTPTRGEALTLPT 404
Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
D + + F F R +EV GQ+Y G+ G++
Sbjct: 405 DRVKPPSENELFLFGRTEH-NRSGPVNEVAGQDYNGSYGYVL 445
>gi|126725970|ref|ZP_01741812.1| Outer membrane general secretion pathway protein, Secretin
[Rhodobacterales bacterium HTCC2150]
gi|126705174|gb|EBA04265.1| Outer membrane general secretion pathway protein, Secretin
[Rhodobacterales bacterium HTCC2150]
Length = 466
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 128/482 (26%), Positives = 230/482 (47%), Gaps = 42/482 (8%)
Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
+ +V+ P A + +++ +N+ I+++ +V V++P+
Sbjct: 1 MGLSLAVSTAPLSGYAETLKVVKGS----PSNSLNVPMNRAIVVETETSFGEVSVANPSI 56
Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
AD+ S +T+Y+ GK G+ + L+ G+ + N+D+ + D+A + L++ + I
Sbjct: 57 ADISTLSDKTIYVLGKAPGRTTLTLLDGTGRLISNVDVHVTPDVAEFKERLQQILPGEPI 116
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
V +D +V+ G V +I RA++L+ + + +V NL+++ G QV
Sbjct: 117 EVRTANDGIVMSGTVSSIGKLDRALDLANRY------------APNRVSNLMSVGGTQQV 164
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------------ 244
LK+ AE++R + K + + +GS G + + A S +
Sbjct: 165 MLKIRFAEMQRSVAKNLTGSLAFSGSLGGNAGATGASQTFSDGSNLANLYDGDSSTSATS 224
Query: 245 -------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
FS+ F+ +L ALE +RTLAEP LTA+SGQ A F +GG++
Sbjct: 225 SQDRDGLFSIGFSNGTIGFQVLLEALETKGVVRTLAEPNLTALSGQKADFLAGGEYPTPA 284
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYR 352
+ G+ + +G+ + FTPTV+ I L+++T VS ++ + ++
Sbjct: 285 I-DDNGSPIIEYKPFGIEMEFTPTVVDGDLINLQLKTSVSSLDTSISAQNSAGFTVFGFK 343
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
RKA TTVE+ G + +AGLL+DD +P L +PI+GALFR+S + R+++E+ +
Sbjct: 344 TRKASTTVEMRDGQSFAIAGLLQDDFTDQSGQVPWLGDVPIIGALFRSSEYERKQSELVV 403
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG-PKEASEVEGQNYKGAIGF 471
TP LV P L+ P D + + + F F V A EV Q++ G+ G+
Sbjct: 404 IVTPHLVTPTRGEALALPTDRVQIPTERELFLFGNVAGKKKIKGAAGEVARQDFSGSYGY 463
Query: 472 IY 473
+
Sbjct: 464 VM 465
>gi|15887573|ref|NP_353254.1| component of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|15155110|gb|AAK86039.1| component of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 527
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 209/494 (42%), Positives = 300/494 (60%), Gaps = 41/494 (8%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+P + + +A+++ I++ G K++ +GLNK +++ +P D D+LV+DP+ AD
Sbjct: 36 SPDFLRTSEAEAQSASIVRITESGTGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADA 95
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V + R +YLFGK VGQ N+ + G G+++++LD+ +ERDI+ LE +RRFI +S+I+VE
Sbjct: 96 VTRTSRRIYLFGKMVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVE 155
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-----------------YANSSSK 182
+VSD +VL G VRT QDS RAV+L++ FL
Sbjct: 156 IVSDNIVLTGSVRTPQDSARAVQLADAFLKGGEATTRNISLTGGNNGGDAAIFAERRQVS 215
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA--ADFGGKFVS 240
+++N+L I GEDQVTLKVT+AEV R +LKQ+GF SI+ S+SG FA ++ G
Sbjct: 216 QIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSISSSTSGNGFEFANPSNLGNAIDG 275
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH------- 293
S F + L+A+E+A +RTLAEP+LTAISG+ A F GG
Sbjct: 276 ASRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRLAAEQE 335
Query: 294 --LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------- 344
+ K T + T DYG+ L+F P VLSPGRI L+I+T VSEP N
Sbjct: 336 VDIDKETGRPTITRTTNTVDYGITLNFKPVVLSPGRISLKIETNVSEPTYEGNVVTGNGG 395
Query: 345 ----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
S R R+ TTVELPSGG+IV+AGL++D+++Q G+P +SKIPI G LFR+
Sbjct: 396 RTIPGSTYMSVRKRETSTTVELPSGGSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLFRS 455
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
F R ETE+ I ATP+LV+PVA ++RPDD+++ E+DA +F NRVNK+YG K+ V
Sbjct: 456 KEFLRNETELVIIATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNKVYGRKDQ--V 513
Query: 461 EGQNYKGAIGFIYK 474
+ Y+G++GFIYK
Sbjct: 514 QAAPYQGSVGFIYK 527
>gi|146338123|ref|YP_001203171.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278]
gi|146190929|emb|CAL74934.1| putative Pilus assembly protein cpaC; putative signal peptide
[Bradyrhizobium sp. ORS278]
Length = 500
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 163/493 (33%), Positives = 265/493 (53%), Gaps = 32/493 (6%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
+R L ++ + + NP++A + AA + + +++G+ K +++
Sbjct: 17 LRTLMVRALSLSAAAALTLNPALAPVIAADYRPAAAAPPAADGQINARFLALGVGKSVVI 76
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI ++RD+
Sbjct: 77 DLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDAQGQQIAAYDIAVKRDL 136
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
L++ + +++I++E + D +VL G + ++Q+A EL+
Sbjct: 137 NGARAALKQLLPNADIQIEGLGDGIVLTGSASSQIEAQQAGELAARLAGG---------- 186
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
++KV+N + + G DQV LKVT+AEV+R ++KQ+G S + FA
Sbjct: 187 AEKVVNSITVRGRDQVMLKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFANSNPFTAYG 246
Query: 241 EG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ S + L A+E A IRTLAEP LTAISG+SA+F +GG+
Sbjct: 247 SNLVSNNAVSAAFGSTPSVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPA 306
Query: 298 VSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------- 339
S T V +G+ L+FTP VLS GRI +R+ TEVSE
Sbjct: 307 GYSCDPTTHVCTTQISFKKFGISLNFTPIVLSEGRISMRVMTEVSELSNENSITLSQAVS 366
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
VN+ +PS + R+A+TT+E+PSGG + +AGL++ +Q G+P L ++P+LGALFR
Sbjct: 367 STTVNSLTVPSIKTRRAETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGALFR 426
Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
+ + +TE+ + TPF+V+ V+ +DLSRPDD ++ D +A +N+IYG +E
Sbjct: 427 SRDYVNNQTELMVLVTPFVVRAVSQKDLSRPDDGFAAASDPQADLLGSINRIYGVPGRTE 486
Query: 460 VEGQNYKGAIGFI 472
G+NY+G GFI
Sbjct: 487 P-GRNYRGTYGFI 498
>gi|84516633|ref|ZP_01003992.1| Outer membrane general secretion pathway protein, Secretin
[Loktanella vestfoldensis SKA53]
gi|84509669|gb|EAQ06127.1| Outer membrane general secretion pathway protein, Secretin
[Loktanella vestfoldensis SKA53]
Length = 476
Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats.
Identities = 131/478 (27%), Positives = 218/478 (45%), Gaps = 35/478 (7%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
+ + A A + + + + +N+ ++++ V ++ +++P A
Sbjct: 10 ALAGVALSMTAAAPAMAQDSTLRVLRGAASNALDVPMNRAVVVESDVPFTELSIANPGIA 69
Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
D+ S RT+Y+ GK G+ + L+ DG+ + N+++ + D+A + L + + NI
Sbjct: 70 DISSLSDRTIYVLGKEPGRTTLTLLSADGRLITNVEVHVSPDMAEFKERLTQILPGENIE 129
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
V +D +VL G V + RA++L++ + + +V NL+++ G QV
Sbjct: 130 VRTANDGIVLSGTVSSTARLDRALDLAQRY------------APDRVSNLMSVGGTQQVM 177
Query: 198 LKVTIAEVRR-------------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---E 241
LKV AE++R Q G +++ +
Sbjct: 178 LKVRFAEMQRSVSKALSSSLSLNGTSLQNGRNIRGGSNTTVGQAGITNTLNNIVPTANDN 237
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G F +L ALE +R+LAEP LTA+SGQ A+F +GG++ VSS
Sbjct: 238 NGAFLFGFGAGGVEVGVLLEALESRGVVRSLAEPNLTALSGQQATFLAGGEYPVP-VSSE 296
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKAD 357
GA SV +GV L+FTP V+ I L + VS N ++ ++ R+
Sbjct: 297 DGAISVEYKPFGVELNFTPRVVDGDVINLELLAAVSAIDPSNSFSANGFEISAFSRRETS 356
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TTVE+ G + +AGLL DD L +P + +PILGALFR++ + R +TE+ I TP
Sbjct: 357 TTVEMRDGESFAIAGLLSDDFTDLSGQVPWIGDVPILGALFRSAEYARRQTELVIIVTPH 416
Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP--KEASEVEGQNYKGAIGFIY 473
LV P L+ P D + F F RV P A EV Q++ G+ G++
Sbjct: 417 LVSPTRGTALALPTDRVRPPSEQDLFLFGRVTAASAPTRGGAGEVARQDFMGSYGYVM 474
>gi|254501806|ref|ZP_05113957.1| Putative phospholipid-binding domain family [Labrenzia alexandrii
DFL-11]
gi|222437877|gb|EEE44556.1| Putative phospholipid-binding domain family [Labrenzia alexandrii
DFL-11]
Length = 483
Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats.
Identities = 166/482 (34%), Positives = 273/482 (56%), Gaps = 21/482 (4%)
Query: 2 RYLQRTFFTMMS-IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
+ ++R+ + + +A +EA + I+++ E + +++G+ + +++
Sbjct: 14 KSIRRSGLRFCAFAAVMGLVSFMAPASWSQEAFPSQIHVAAGERATDRILNVGIGRSVVI 73
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ D DVLVS+P AD V+ +PR +++ G GQA ++L G G+++ + DI +E+D
Sbjct: 74 NLAEDAADVLVSNPQIADAVLRTPRRIFVLGNTAGQARLVLFGRSGRELASFDIRVEKDT 133
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+ + +RR I ++++ E ++ VVL G ++ ++Q+A +++ F +
Sbjct: 134 SDITRIIRRLIPGTSVQAESINGKVVLSGTAKSTLEAQQAADIAAKFQGDETGSA----- 188
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
++NL+ ++G DQV LKVT+AEV R I+KQ+G +G F ++F V+
Sbjct: 189 ---IVNLIAVSGSDQVHLKVTVAEVERSIIKQLGVSFQA-NLGAGNFFPFGSNFPNFNVN 244
Query: 241 EG----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V S + AL+R IRTLAEPTLTA SG++ASF +GG+
Sbjct: 245 PSIVNQATGGVTFSSGTSSLTAQVEALQRDGVIRTLAEPTLTATSGENASFLAGGEFPIP 304
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYR 352
SV +GV L FTP VL+ GRI LR++TEVSE + + + +
Sbjct: 305 IA-QEDNQISVEFKKFGVGLDFTPIVLTGGRISLRVKTEVSELSNEGAVSAGGITISALK 363
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
VR+A++T+ELPSGGT+V+AGLL++ QQ EG+P L +IP+LGALF++ F +++TE+ +
Sbjct: 364 VRRAESTMELPSGGTLVMAGLLEESYQQAVEGVPGLMQIPVLGALFKSRDFLKQQTELAV 423
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
TP++VKPVA + + RPD + DA+A F NR+NKI+ A E Y G +GFI
Sbjct: 424 FVTPYVVKPVAAQKMVRPDKNLFAPSDAEAIFLNRLNKIF--NPAGEQAQGTYHGQVGFI 481
Query: 473 YK 474
YK
Sbjct: 482 YK 483
>gi|27376550|ref|NP_768079.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
gi|27349691|dbj|BAC46704.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
Length = 496
Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats.
Identities = 160/493 (32%), Positives = 261/493 (52%), Gaps = 34/493 (6%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
MR + + NP++ + AA + + + +S+G+ K I++
Sbjct: 15 MRTSMVRALSFSAALALVLNPALTPVVAADYRPAAPV--AADGQMNARFLSLGVGKSIVI 72
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI ++RD+
Sbjct: 73 DLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSAGQQIAAYDIAVKRDL 132
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+ L++ + +S+I+++ + + +VL G ++Q+A +L+
Sbjct: 133 NGVRAALKQILPNSDIQIDGLGEGIVLTGTAANPMEAQQANDLAARLAGG---------- 182
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
+ KV+N + + G DQV LKVT+AEV R I+KQ+G + + +F+ +
Sbjct: 183 ADKVVNSIVVRGRDQVMLKVTVAEVARSIVKQLGIDLTANLNYGTSVVTFSNSNPFTALG 242
Query: 241 EG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ G+ S + L A+E A IRTLAEP LTAISG+SA+F +GG+
Sbjct: 243 KNLVDGNSLTTKFGATPSVQATLRAMETAGVIRTLAEPNLTAISGESATFIAGGEFPVPA 302
Query: 298 VSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------- 339
+ T V +G+ L+FTP VL+ G+I LR+ TEVSE
Sbjct: 303 GYACDPTTHVCTTQISFKKFGISLNFTPVVLTEGKISLRVMTEVSELSNENAITLSQAVT 362
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
VN+ +PS + R+A+T++E+PSGG + +AGL++ +Q G+P L ++PILG LFR
Sbjct: 363 STSVNSLTVPSIKTRRAETSLEIPSGGAMAMAGLIQQQTKQAVSGLPGLMQLPILGTLFR 422
Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
+ F TE+ + TP++V+ VA +DLSRPDD +S D + +N+IYG +E
Sbjct: 423 SRDFVNNATELVVIVTPYIVRAVAQKDLSRPDDGFSAPADPQVELLGNINRIYGVPGRTE 482
Query: 460 VEGQNYKGAIGFI 472
G+NY+G GFI
Sbjct: 483 P-GRNYRGTYGFI 494
>gi|126733573|ref|ZP_01749320.1| bacterial type II/III secretion system protein [Roseobacter sp.
CCS2]
gi|126716439|gb|EBA13303.1| bacterial type II/III secretion system protein [Roseobacter sp.
CCS2]
Length = 476
Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats.
Identities = 130/478 (27%), Positives = 219/478 (45%), Gaps = 35/478 (7%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
+ L + A + + +S+ +++ ++++ V ++ +++P A
Sbjct: 10 AIAGLTLSLTAAAPSIAPAETLRVLRGAASSALSVPMSRAVVVESDVPFTELSIANPGIA 69
Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
D+ S RT+Y+ GK G+ + L+G +G+ + N++I + D+A + L + + NI
Sbjct: 70 DISSLSDRTIYVLGKEPGRTTLTLLGENGRLITNVEIHVSPDMAEFKERLTQILPGENIE 129
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
V +D +VL G V +I RA++L+E + + ++V NL+ + G QV
Sbjct: 130 VRTANDGIVLSGTVSSIARLDRALDLAERY------------APERVSNLMMVGGTQQVM 177
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------------GKFVSE 241
LKV AE++R + K + +++G S +
Sbjct: 178 LKVRFAEMQRSVSKALSTSVALSGLGFDDDVSITGGTNRTIGQSAINGALSGSVPGSNAN 237
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G +L ALE +R+LAEP LTA+SGQ A+F +GG++ T +
Sbjct: 238 NGAVLFGFGAGGLEVGILLEALETRGVVRSLAEPNLTALSGQEATFLAGGEYPVPTANDG 297
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKAD 357
G SV +GV L F P V+ I L + VS N + ++ R+
Sbjct: 298 -GTISVEFRPFGVELSFVPRVVDHDIINLELSAAVSAIDPSNGFQANGFSVDAFTRRETS 356
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TTVE+ G + +AGLL DD L +P + IP+LGALFR++ + R +TE+ I TP
Sbjct: 357 TTVEMRDGESFAIAGLLSDDFTDLNGQLPWVGDIPVLGALFRSAEYARRQTELVIIVTPH 416
Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP--KEASEVEGQNYKGAIGFIY 473
LV P L+ P D + F F +V GP A EV Q++ G+ G++
Sbjct: 417 LVSPTRGEALALPTDRVRPPTEQGLFLFGQVANEGGPSSGGAGEVARQDFSGSYGYVL 474
>gi|154250689|ref|YP_001411513.1| type II and III secretion system protein [Parvibaculum
lavamentivorans DS-1]
gi|154154639|gb|ABS61856.1| type II and III secretion system protein [Parvibaculum
lavamentivorans DS-1]
Length = 491
Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats.
Identities = 162/470 (34%), Positives = 256/470 (54%), Gaps = 29/470 (6%)
Query: 23 VAKLPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
V+ +A ++ I IG + I +GLNK I+++P+ +DVLVS+P D VV
Sbjct: 31 VSPAGGAFAGDARLVKIDQGGIGQSSRSIVLGLNKAAIVELPIAARDVLVSNPAIVDAVV 90
Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
+ + YL G VGQ N G+Q+LNL+I + RD+ L +LR++ + I VE +
Sbjct: 91 RTNKRTYLIGLAVGQTNAFFFNEAGQQILNLEIRVARDLTGLRESLRQYFPKARIDVESI 150
Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
+D VVL GMV + D+ +A + + ++ + V+N+L I G++QV LKVT
Sbjct: 151 NDHVVLSGMVASATDASKAQDFAARYIGGDK---------EHVLNMLGIEGKEQVMLKVT 201
Query: 202 IAEVRRDILKQIGFQHSITGS---------SSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+AE++R+++KQ+G S + +S GG + +
Sbjct: 202 VAEMQRNVIKQLGVDLSTAANFGDFALRLATSNSFSVQGGSLGGLTTAADAADPTRYQSG 261
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+ ++ + ALER +RTLAEP LTAISG+SA F +GG+ T G + +
Sbjct: 262 DVTVDSAIRALERDGILRTLAEPNLTAISGESAKFLAGGEFPVPTSRDRDGNVQLEFKPF 321
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMPSYRVRKADTTVELP 363
GV L+FTP VLS GRI L+I TEVSE + +P +VR+A+TT+ELP
Sbjct: 322 GVGLNFTPVVLSEGRISLKISTEVSELTSEGAFVFQSTSADGVTVPGLKVRRAETTLELP 381
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
SGG++V+AGLL D ++Q +G+P + +P+LG LFR+ + + ETE+ + TP+LV P +
Sbjct: 382 SGGSLVMAGLLSDTMRQNIDGVPGVKDVPVLGQLFRSRDYQKNETELVVIVTPYLVDPTS 441
Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
++L P D ++ D R+N YG + A+ + + +G +GFI
Sbjct: 442 RKNLVLPTDGFAPASDMDTILMGRLNATYGARGAAPGD-HSLQGPVGFIV 490
>gi|159043678|ref|YP_001532472.1| type II and III secretion system protein [Dinoroseobacter shibae
DFL 12]
gi|157911438|gb|ABV92871.1| type II and III secretion system protein [Dinoroseobacter shibae
DFL 12]
Length = 474
Score = 349 bits (894), Expect = 7e-94, Method: Composition-based stats.
Identities = 131/468 (27%), Positives = 222/468 (47%), Gaps = 37/468 (7%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
A A V+ + + + + + +N+ ++++ + ++ V++P AD+ S R++Y
Sbjct: 22 TAPAMAQVLRVQEGQAD--STLQVPMNRAVVVESDIPFAELSVANPGIADIATLSDRSIY 79
Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
+ GK+ G+ + L+G DG+ + N+D+ + DIA + L + + NI V +D VVL
Sbjct: 80 VLGKSQGRTTMTLLGADGRLITNVDVQVTPDIAEFKERLEQILPGENIEVRTANDGVVLS 139
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G ++ RA++L++ + + +V NL++I G QV LKV AE++R
Sbjct: 140 GTASSVTAMDRALDLAQRY------------APDRVSNLMSIGGSQQVMLKVRFAEMQRS 187
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------------EGGDFSVKGVLD 252
+ KQ+ + S + + S GG G + +
Sbjct: 188 VSKQLSGGLTAIYSGTDGAFSVGLGSGGLTDGGSIGGANSTEFTLNPEAAGTIGLGFNIG 247
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
S +L ALE +RTLAEP LT +SGQ ASF +GG++ V+ G SV +
Sbjct: 248 NVSLGILLEALESKGVVRTLAEPNLTTLSGQEASFLAGGEYPIP-VADGDGGISVEYKPF 306
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTI 368
GV L F PTVL I L + VS ++ + + R+ TTV+L G +
Sbjct: 307 GVELDFIPTVLDDDVINLELGAAVSALDSSASIITDSLTVQGFSRRETLTTVQLRDGDSF 366
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
+AGLL+DD + +P L IP+LGALFR++ + R ++E+ I T LV P L
Sbjct: 367 AIAGLLEDDFRDFAGQVPWLGDIPVLGALFRSADYARSQSELVIIVTAHLVSPTRGEALV 426
Query: 429 RPDDHYSVEDDAKAFFFNRV--NKIYGPKEASEVEGQNYKGAIGFIYK 474
P D + + + F + A EV Q++ G+ G++ +
Sbjct: 427 LPTDRVRIPSEREFFLNGNLVREDTPRRGAAGEVAQQDFSGSYGYVLE 474
>gi|241207157|ref|YP_002978253.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240861047|gb|ACS58714.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 499
Score = 349 bits (894), Expect = 7e-94, Method: Composition-based stats.
Identities = 223/483 (46%), Positives = 307/483 (63%), Gaps = 25/483 (5%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
S + +S + + + +++ IS +++ +GLNK +++ +P D D+LV
Sbjct: 22 ASGMVPASFAPLFGAGEARADSDSLVRISQTGSNAHRRLKLGLNKAVVVDLPEDAHDILV 81
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
SDPT AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE+ LRRFI
Sbjct: 82 SDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNLRRFI 141
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS----------- 180
DSNI VE+VSD +VL G VRT QD+ +A +L++ FL ++
Sbjct: 142 PDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVAL 201
Query: 181 ------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFA 231
S +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + + +G + S +
Sbjct: 202 FAEGRQSSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQLGSPS 261
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
AD V G K + ++ T L+ALE+A ++TLAEPTLTAISGQ+A+F SGG
Sbjct: 262 ADSAASTVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATFNSGG 321
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
Q LY T S G +V +YG+ L F P VLS GRI L+I+T VSEPV G Y
Sbjct: 322 QQLYSTT-DSDGNVTVVPFNYGISLAFKPVVLSSGRISLQIKTNVSEPVAGSGNAT---Y 377
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+ETE+
Sbjct: 378 QRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELV 437
Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G+IGF
Sbjct: 438 IIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGF 496
Query: 472 IYK 474
IYK
Sbjct: 497 IYK 499
>gi|86748907|ref|YP_485403.1| type II and III secretion system protein [Rhodopseudomonas
palustris HaA2]
gi|86571935|gb|ABD06492.1| type II and III secretion system protein [Rhodopseudomonas
palustris HaA2]
Length = 479
Score = 349 bits (894), Expect = 9e-94, Method: Composition-based stats.
Identities = 164/481 (34%), Positives = 269/481 (55%), Gaps = 25/481 (5%)
Query: 6 RTFFTMMS-IFLFSSNPSVAKLPPIKEANAAVINISDVEIGK---GKKISIGLNKVIILQ 61
R T+ S+ ++ LPP A+ + + G + +++G+ K +++
Sbjct: 8 RFIRTLTGTAMAVSAVVALTMLPPWTPVKASDYRATTTQTGGGMNARPLALGIGKSVVID 67
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
+P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI + RD+
Sbjct: 68 LPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTRDLN 127
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
+ L++ I +++IRVE + D V+L G V T ++Q+A +L+ +
Sbjct: 128 GIRAALQQSIPNADIRVEGLGDGVILMGSVATPIEAQQAADLAARLAGD----------A 177
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
KV+N + I G DQV LK+T+AEV+RDI+KQ+G + S SF +
Sbjct: 178 SKVVNNIAIRGRDQVMLKITVAEVQRDIVKQLGVDLTANLSYGTSVVSFTNTNPFTQSGQ 237
Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G+ + S L A+E A +RTLAEP LTAISG+ ASF +GG+ +
Sbjct: 238 ALVSGNALTTSFGNGPSITATLKAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPVPSG 297
Query: 299 SSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGDMPSY 351
+ T SV+ +GV+L+FTP VLS GRI L++ TEV S+ + ++ +PS
Sbjct: 298 VTCTNAVCTPSVSYKKFGVLLNFTPVVLSEGRISLKVATEVSEVSSDNSVTISGTTVPSI 357
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+ R+ D+TVE+PSGG++ +AGL+++ +Q G+P +++IPILG LFR+ + ++E+
Sbjct: 358 KTRRVDSTVEIPSGGSLAMAGLIQEQTKQAINGMPGMTQIPILGTLFRSRDYINRQSELM 417
Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
+ TP++V+ VA +DLSRPDD ++ D ++ +N+IYG + + Q Y+G GF
Sbjct: 418 VLVTPYVVRAVAPKDLSRPDDGFADASDPQSDLLGSINRIYGVPGRT-GQSQTYRGRFGF 476
Query: 472 I 472
I
Sbjct: 477 I 477
>gi|86355864|ref|YP_467756.1| pilus assembly secretion protein [Rhizobium etli CFN 42]
gi|86279966|gb|ABC89029.1| pilus assembly secretion protein [Rhizobium etli CFN 42]
Length = 498
Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats.
Identities = 225/498 (45%), Positives = 310/498 (62%), Gaps = 30/498 (6%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPI-----KEANAAVINISDVEIGKGKKISIGLNK 56
R + +S+ + ++ + A P+ A +++ IS +++ +GLNK
Sbjct: 6 RRAKLLLTGCLSLAVGATGIAPASFGPLLVVNEARAAESLVRISQTGPDAHRRLKLGLNK 65
Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
+++ +P D D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++NLDI I
Sbjct: 66 AVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEVVNLDIEI 125
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
ERD++ LE LRRFI DSNI+VE+VSD +VL G VRT QD+ +A +L++ FL
Sbjct: 126 ERDVSGLETNLRRFIPDSNIKVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTR 185
Query: 177 ANSSS-----------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217
++S +V+NLL I GEDQVTLKVTI EVRR++LKQ+GF +
Sbjct: 186 TETASGTGGDSSVALFAEGRQTSQVVNLLQIQGEDQVTLKVTITEVRREVLKQLGFDNLV 245
Query: 218 -SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
+ +G + S AD V G K + ++ T L+ALE+A +RTLAEPT
Sbjct: 246 SNSSGMTVAQLGSPNADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPT 305
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
LTAISGQ+A+F SGGQ LY T + G +V +YG+ L F P VLS GRI L I+T V
Sbjct: 306 LTAISGQAATFNSGGQQLYSTT-DNNGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNV 364
Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
SEPV G Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG
Sbjct: 365 SEPVAGSGNAT---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGT 421
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +E
Sbjct: 422 LFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRRE 481
Query: 457 ASEVEGQNYKGAIGFIYK 474
A + Q + G+IGFIYK
Sbjct: 482 APVADAQ-FHGSIGFIYK 498
>gi|91977985|ref|YP_570644.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB5]
gi|91684441|gb|ABE40743.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB5]
Length = 480
Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats.
Identities = 158/482 (32%), Positives = 266/482 (55%), Gaps = 23/482 (4%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
+R L+ T + ++ + P++A + + + + + +++G+ K +++
Sbjct: 10 IRTLKGTAMALSAVVALTLFPTLAPVQASDY-RDTPARMGNSGLN-ARPLALGIGKSVVI 67
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI + RD+
Sbjct: 68 DLPRDIKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTRDL 127
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+ LR+ I +++I+VE + D V+L G V T ++Q+A +L+
Sbjct: 128 NGIRTALRQSIPNADIQVEGLGDGVMLIGSVATPIEAQQAADLAARLAGD---------- 177
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGK 237
+ KV+N + + G DQV LK+T+AEV+RDI+KQ+G + G+S +
Sbjct: 178 ASKVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLTASMNYGTSVVKFSNTNPFTQSG 237
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ S L A+E A +RTLAEP LTAISG+ ASF +GG+ +
Sbjct: 238 GPLVANNALTTSFGSGPSVSATLRAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPVPS 297
Query: 298 VSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPS 350
+ T SVT +GV+L+FTP VL+ GRI L++ TEVSE + +PS
Sbjct: 298 GVTCTNSLCTPSVTFKKFGVLLNFTPVVLTEGRISLKVSTEVSEVSSDNSIVIGGLSVPS 357
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ R+ ++TVE+PSGG++ +AGL+++ +Q G+P ++++PILG LFR+ + +TE+
Sbjct: 358 IKTRRIESTVEIPSGGSLAMAGLIQEQTKQAINGLPGMTQLPILGTLFRSRDYINRQTEL 417
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
+ TP++V+ VA +DLSRPDD ++ D ++ +N+IYG + Q Y+G G
Sbjct: 418 MVMVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGNINRIYGVPGRTGPA-QTYRGRFG 476
Query: 471 FI 472
FI
Sbjct: 477 FI 478
>gi|39936740|ref|NP_949016.1| type II and III secretion system protein [Rhodopseudomonas
palustris CGA009]
gi|192292566|ref|YP_001993171.1| type II and III secretion system protein [Rhodopseudomonas
palustris TIE-1]
gi|39650596|emb|CAE29119.1| putative exporter protein, cpaC [Rhodopseudomonas palustris CGA009]
gi|192286315|gb|ACF02696.1| type II and III secretion system protein [Rhodopseudomonas
palustris TIE-1]
Length = 480
Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats.
Identities = 158/476 (33%), Positives = 260/476 (54%), Gaps = 23/476 (4%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
T + + + PS + A V S + IS+G+ K +++ +P D+
Sbjct: 16 TAIALSAAVALTLIPSWTAVHASDYRAAPVPPASSGL--NAQSISLGIGKSMVIDLPRDI 73
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
+DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI + RD+ L
Sbjct: 74 KDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSAGRQIAAYDIAVTRDLNGLRTA 133
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L++ + ++ I+VE + D V+L+G V + D+Q+A +L+ + + KKV+N
Sbjct: 134 LKQTLPNAEIQVEGLGDGVMLNGWVTSPIDAQQAYDLAVRLVGED----------KKVVN 183
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFVSEGG 243
+ + G DQV LK+T+AEV+RDI+KQ+G S + +F
Sbjct: 184 NIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGTAVVNFNNSNPFTQSGGPLVSS 243
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ S L A+E A +RTLAEP LTAISG+ A+F +GG+ + + T
Sbjct: 244 NALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAISGEPATFLAGGEFPVPSGVTCTN 303
Query: 304 ---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKA 356
SVT +G++L+FTP V++ GRI L++ TEVSE + +PS + R+
Sbjct: 304 GVCTPSVTFKKFGILLNFTPVVMTAGRISLKVMTEVSEVSSDNSVIISNMSVPSIKTRRV 363
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
++TVE+PSGG++ +AGL+++ +Q G+P +++PILG LFR+ + +TE+ + TP
Sbjct: 364 ESTVEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLPILGTLFRSRDYINRQTELMVLVTP 423
Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
++V+ VA +DLSRPDD ++ D ++ +NK+YG +E + Y+G GFI
Sbjct: 424 YVVRAVAQKDLSRPDDGFADASDPQSDLLGSINKLYGVPGRTEPA-RTYRGRFGFI 478
>gi|190889881|ref|YP_001976423.1| pilus assembly secretion protein [Rhizobium etli CIAT 652]
gi|190695160|gb|ACE89245.1| pilus assembly secretion protein [Rhizobium etli CIAT 652]
gi|327194694|gb|EGE61540.1| pilus assembly secretion protein [Rhizobium etli CNPAF512]
Length = 499
Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats.
Identities = 225/487 (46%), Positives = 308/487 (63%), Gaps = 29/487 (5%)
Query: 12 MSIFLFSSNPSV-AKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I + P+ L + EA A +I I+ +++ +GLNK +++ +P D
Sbjct: 18 LAISVTGMAPATFGPLLAVDEARADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE L
Sbjct: 78 DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182
RRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL ++S
Sbjct: 138 RRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 197
Query: 183 ------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPS 227
+V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + + +G +
Sbjct: 198 AVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFDNLISNSSGMTVAQL 257
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
+ +AD V G K + ++ T L+ALE+A +RTLAEPTLTAISGQ+A+F
Sbjct: 258 GTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATF 317
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
SGGQ LY T + G +V +YG+ L F P VLS GRI L I+T VSEPV G
Sbjct: 318 NSGGQQLYSTT-DNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNAT 376
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+E
Sbjct: 377 ---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQE 433
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
TE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G
Sbjct: 434 TELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHG 492
Query: 468 AIGFIYK 474
+IGFIYK
Sbjct: 493 SIGFIYK 499
>gi|209551759|ref|YP_002283676.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209537515|gb|ACI57450.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 499
Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats.
Identities = 221/487 (45%), Positives = 307/487 (63%), Gaps = 29/487 (5%)
Query: 12 MSIFLFSSNPSVAKL----PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
+++ + P+ + + ++ IS +++ +GLNK +++ +P D
Sbjct: 18 LAVGISGIAPASFAPLLGSSEARADSENLVRISQTGRDAHRRLKLGLNKAVVVDLPEDAH 77
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE+ L
Sbjct: 78 DILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNL 137
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182
RFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL ++S
Sbjct: 138 HRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 197
Query: 183 ------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPS 227
+V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + + +G +
Sbjct: 198 SVALFAEGRQTSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQL 257
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
S +AD V G K + ++ T L+ALE+A ++TLAEPTLTAISGQ+A+F
Sbjct: 258 GSPSADSATSVVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATF 317
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
SGGQ LY T S G +V +YG+ L F P VLS GRI L+I+T VSEPV G +
Sbjct: 318 NSGGQQLYSTT-DSNGNVTVVPFNYGINLAFKPVVLSSGRISLQIKTNVSEPVAGSSGAT 376
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+E
Sbjct: 377 ---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQE 433
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
TE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G
Sbjct: 434 TELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHG 492
Query: 468 AIGFIYK 474
+IGFIYK
Sbjct: 493 SIGFIYK 499
>gi|163733542|ref|ZP_02140985.1| type II/III secretion system protein, putative [Roseobacter
litoralis Och 149]
gi|161393330|gb|EDQ17656.1| type II/III secretion system protein, putative [Roseobacter
litoralis Och 149]
Length = 440
Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats.
Identities = 121/455 (26%), Positives = 213/455 (46%), Gaps = 24/455 (5%)
Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
A A + I E + +++ N+ ++++ + ++ +++P AD+ S R++
Sbjct: 2 APLTAQAEALRIIARET--SETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSDRSI 59
Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
Y+ GK G + L+ G+ + N+++ + D+ + LR+ + I V +D +VL
Sbjct: 60 YVLGKVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKERLRQILPGEAIEVRTANDGIVL 119
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + Q +A+EL+ + + +V NL+ + G QV LKV AE+ R
Sbjct: 120 SGQVSSSQRLSKALELAARY------------APDRVSNLMTVGGVQQVMLKVRFAEMSR 167
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALER 265
+ KQ+ I G+ + ++ G L + +L ALE
Sbjct: 168 GVSKQLQSSLRIGGTEAQAGIGRGIGGIPNLAADTAQGAVFFDFGLGSTQVQLLLEALET 227
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
A+RTLAEP L ++SGQ A+F +GG++ S SV +G+ L+F P V+
Sbjct: 228 KGAVRTLAEPNLVSLSGQEANFLAGGEYPVPV--QSEDGISVDYKPFGIELNFVPRVVDG 285
Query: 326 GRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
I L++ S + + ++ R+A TTVE+ G + +AGLL+D+
Sbjct: 286 DLINLQLSAATSSIDPSNGISVGDSFTVDAFIRREASTTVEMRDGESFAIAGLLEDNFND 345
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
+P LS +PILGALFR++ + R +TE+ I T LV P L+ P D +
Sbjct: 346 NISQVPWLSDVPILGALFRSTDYMRNQTELVIIITAHLVTPTRGEALALPTDRIRPPSEK 405
Query: 441 KAFFFNR-VNKIYGPKEASEVEGQNYKGAIGFIYK 474
F R + + A EV Q++ G+ G++ +
Sbjct: 406 DLFLNGRTIQTLNARGAAGEVAKQDFGGSYGYVME 440
>gi|294676059|ref|YP_003576674.1| type II and III secretion system protein [Rhodobacter capsulatus SB
1003]
gi|294474879|gb|ADE84267.1| type II and III secretion system protein [Rhodobacter capsulatus SB
1003]
Length = 469
Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats.
Identities = 124/470 (26%), Positives = 219/470 (46%), Gaps = 43/470 (9%)
Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
A + I +++ +N+ ++++ ++ +++P ADV S +T+
Sbjct: 20 VTLPVAAETLRIVSGT--GSTPLAVPMNRAVVVESDQPFSELSIANPGIADVTTLSDKTI 77
Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
Y+ GK G+ + ++G DG + N+++ + DIA + L++ + NI V +D +VL
Sbjct: 78 YVLGKVPGRTTMTILGADGTLLSNVEVQVTPDIAEFKERLKQILPGENIEVRTANDGIVL 137
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + RA++L+ + ++V NL+N+ G QV LKV AE++R
Sbjct: 138 SGTVSSSAKLDRALDLARRYAG------------ERVSNLMNVGGTQQVMLKVRFAEMQR 185
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------------GDFSVK 248
+ K + ++ G+ G + G + G +
Sbjct: 186 SVSKNLASSLAMRGTVGGGNAQTGVITGTGNFTATDAVGNAFDKGTMPISASTQGALGLG 245
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
+ F +L ALE +RTLAEP LTA+SGQ A F +GG++ V ++
Sbjct: 246 FTVGNMEFGVLLEALESKGMVRTLAEPNLTALSGQQAKFLAGGEYPIPVV--DDDGITIE 303
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPS 364
+GV + F P V+ I L I VS + N + +++ R+ TTVE+
Sbjct: 304 YKPFGVEMSFIPRVVDGDLINLEIAAAVSAIDTSVTMTNNGTTVNAFKRRETSTTVEMRD 363
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G + +AGLL+DD L IP L +P+LG+LFR++ F R+++E+ I TP LV P
Sbjct: 364 GESFAIAGLLQDDFNDLNTQIPWLGDVPVLGSLFRSTAFERKQSELVIIITPHLVTPTHG 423
Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
L+ P D + +++ F + A EV Q++ G+ G++ +
Sbjct: 424 EALALPTDRIRLPSESELFLRGKTEG----GAAGEVARQDFSGSYGYVME 469
>gi|220922779|ref|YP_002498081.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
gi|219947386|gb|ACL57778.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
Length = 494
Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats.
Identities = 151/472 (31%), Positives = 239/472 (50%), Gaps = 20/472 (4%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
A + A V+++ E ++I + + +++ +P D ++V V++P A
Sbjct: 24 GLASPAAAQQRVPAMPAPVLSVGPQEADISRRIDLTQGRSLVVDLPRDAKEVFVANPKVA 83
Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
+ VV S R +++ G G ++ ++ +G+Q+ LD+ + RD+ L TL I
Sbjct: 84 NAVVRSTRKVFIIGVENGATSIFVMDAEGRQIAALDVTVGRDLNVLRQTLASSIPKGRFE 143
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
V D+++L G V + ++Q+A++++ F+ G + +N + I G+DQV
Sbjct: 144 VRPAGDSILLSGSVNSAAEAQQAIDVANAFVGIGGGGVPGRGAV---INNITIRGKDQVM 200
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
L+VT+ EV R +LKQ G S S+ + + A GG F S
Sbjct: 201 LRVTVVEVSRSVLKQFGVNLSGNWSNLNFANVAPLALNGGSFPIGNAISGSINFGGGASL 260
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------GATSVT 308
L A E+A R LAEPTLTAISG+SA FT+GGQ + + SVT
Sbjct: 261 TATLKAFEQAGVSRVLAEPTLTAISGESAKFTAGGQLPVPGNLACSAPSNGVQLCTPSVT 320
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTV 360
YGV L FTP VLS RI +R+ T+V+E + +P + VR ++TTV
Sbjct: 321 FKPYGVSLTFTPVVLSENRISIRVGTDVTEIDPQNSMNINFSGTTTAIPGFTVRTSETTV 380
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
EL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I TP++ K
Sbjct: 381 ELASGATMMTAGLIQQRNRAAITGLPALMNLPILGALFRSRDYQRDETELMIMVTPYIAK 440
Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
+ ++ RPDD + D +A R N++YG AS + + Y G GFI
Sbjct: 441 AMEPAEIKRPDDGFVDATDGQAVLLGRFNRLYGVVGASPLAPKAYHGRFGFI 492
>gi|89068017|ref|ZP_01155434.1| Outer membrane general secretion pathway protein, Secretin
[Oceanicola granulosus HTCC2516]
gi|89046256|gb|EAR52313.1| Outer membrane general secretion pathway protein, Secretin
[Oceanicola granulosus HTCC2516]
Length = 482
Score = 345 bits (886), Expect = 7e-93, Method: Composition-based stats.
Identities = 130/459 (28%), Positives = 216/459 (47%), Gaps = 43/459 (9%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
+ + + +N+ ++++ +V +++P AD+ S RT+Y+ GK G+ + L+G
Sbjct: 36 APSRALQVPMNRAVVVESDTPFTEVSIANPGIADISTLSDRTLYVLGKEPGRTTLTLLGA 95
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
DG+ + N+++ + DI + L + + +I V ++ +VL G V +I RA+EL+
Sbjct: 96 DGRLITNVEVQVTPDIDEFKERLAQILPGEHIEVRTAANGIVLSGTVSSIARLDRALELA 155
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + + +V NL+ + G QV LKV AE++R + K + + G++
Sbjct: 156 QRY------------APDRVSNLMTVGGVQQVMLKVRFAEMQRSVSKSLSSSLTARGTAL 203
Query: 225 GPSKSFAADFGG----------------KFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
G + A G + G + +L ALE
Sbjct: 204 GENLGLTAGTGTLTGNGAIGSALNGNVPAANANNGALLLGFNAGGVEIGMLLEALESRGV 263
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+RTLAEP LTA+SGQ A F +GG++ VS G+ S+ +GV L+F P V+ I
Sbjct: 264 VRTLAEPNLTALSGQEARFLAGGEYPVP-VSQDGGSISIEYKPFGVELNFIPRVVDGDLI 322
Query: 329 GLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
L +Q VS + ++R R+ TTVE+ G + +AGLL DD L
Sbjct: 323 NLELQASVSSIDPTNGFVQGGFSIDAFRRRETSTTVEMRDGESFAIAGLLSDDFIDLNSQ 382
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
+P + IP+LGALFR++ + R +TE+ I TP LV P L+ P D + F
Sbjct: 383 LPFVGDIPVLGALFRSAEYERNQTELVIIVTPHLVTPTRGEALALPTDRVRPPSERDLFL 442
Query: 445 FNRVNKIYGPK----------EASEVEGQNYKGAIGFIY 473
F RV G A+EV Q++ G+ G++
Sbjct: 443 FGRVTAPDGSPIPSSSAPQSGAAAEVARQDFSGSYGYVL 481
>gi|83950066|ref|ZP_00958799.1| bacterial type II/III secretion system protein [Roseovarius
nubinhibens ISM]
gi|83837965|gb|EAP77261.1| bacterial type II/III secretion system protein [Roseovarius
nubinhibens ISM]
Length = 429
Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats.
Identities = 131/441 (29%), Positives = 213/441 (48%), Gaps = 34/441 (7%)
Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
+N+ I+++ V ++ V++ + AD S RT+YL GK G+ + L+ G+ + N++
Sbjct: 1 MNRAIVVESDVPFAELSVANASIADFSTLSDRTIYLLGKAPGRTTLTLLDEAGRLITNVE 60
Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
I + DI+ + LR+ + + I V +D +VL G+V + QRA++L++ +
Sbjct: 61 IHVSADISEFKERLRQILPNEKIEVRTANDGIVLSGVVSSTPRMQRALDLAQRY------ 114
Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
+ ++V NL++++G+ QV LKV AE++R + K +G I G S+ +
Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKSLGTSLFIDGLSNAGIGGAIST 168
Query: 234 FG---------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
G G + G + ++ ALE +RTLAEP LT
Sbjct: 169 NGIGSSAQTPVGVQPGTGTAGTNNGAAFIGLNAGSAQVGILIQALESKGLVRTLAEPNLT 228
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
A+SGQ A+F +GG++ V+ GA +V +GV L+F P VL I L I VS
Sbjct: 229 ALSGQEANFLAGGEYPIP-VAQEEGAIAVEFKPFGVQLNFVPYVLDDEVINLEIAAAVSS 287
Query: 339 PVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
+ +R R TTV L G + +AGLL+DD + +P L +PIL
Sbjct: 288 IDPSNGYSDGTITIAGFRTRSTSTTVSLRDGDSFAIAGLLQDDFEDTNGQVPWLGDLPIL 347
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK--IY 452
GALFR++ + R +TE+ I T LV P L+ P D +A F RV +
Sbjct: 348 GALFRSANYQRSQTELVIIVTAHLVTPTRGEALALPTDRVLPPSEADLFLNGRVARQVRN 407
Query: 453 GPKEASEVEGQNYKGAIGFIY 473
EV Q++ G+ G++
Sbjct: 408 SKGSVGEVAKQDFNGSYGYVM 428
>gi|75674499|ref|YP_316920.1| type II and III secretion system protein [Nitrobacter winogradskyi
Nb-255]
gi|74419369|gb|ABA03568.1| type II and III secretion system protein [Nitrobacter winogradskyi
Nb-255]
Length = 493
Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 161/489 (32%), Positives = 262/489 (53%), Gaps = 35/489 (7%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDV 66
++ + A L P+ ++ V + + +S+G+ K +++ +P DV
Sbjct: 14 VARSLAFAAIGAFTLDAALTPVFASDYRVSGAATAGANMHAQSLSLGIGKSVVVDLPRDV 73
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
+DVLV+DP A+ VV S + Y+ G VGQ N+I G+Q+ DI + RD+ L
Sbjct: 74 KDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQQISAYDIAVTRDLNGLRTA 133
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L++ + ++ I+V+ + D V+L G V ++Q+A +L+ ++KV+N
Sbjct: 134 LKQLLPNAAIKVDGLGDGVMLSGWVSNPIEAQQAGDLAARLTDG----------AQKVVN 183
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAADFGGK 237
+ + G DQV LKVT+AEV R ++KQ+G S +++ P +
Sbjct: 184 NIAVRGRDQVMLKVTVAEVARTVIKQMGIDLSASMNYGTAVVNFTNANPFTALGRPLTNN 243
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ ++ G + L A+E A IRTLAEP LTAISG+SA+F SGG+
Sbjct: 244 SAAASFGSTMVGGAPVPAVTATLRAMESAGVIRTLAEPNLTAISGESATFISGGEFPIPA 303
Query: 298 VSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--------- 343
S AT V +G+ L+FTP VL+ GRI LR+ TEVSE
Sbjct: 304 GFSCDPATRVCLTQIRFKKFGISLNFTPVVLTEGRISLRVMTEVSELSNENSMTLNQSVG 363
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
N+ +PS R R+A+TT+E+PSGG++ +AGL+ +Q+ G+P ++++P+LGALFR+ +
Sbjct: 364 NSLTVPSIRTRRAETTLEIPSGGSMAMAGLIHQQTKQVINGLPGIAQVPVLGALFRSRDY 423
Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
+TE+ + TP++V+ VA +DLSRPDD ++ D ++ +N+IYG E +
Sbjct: 424 VNGQTELMVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSLNRIYGAPGRVEPA-R 482
Query: 464 NYKGAIGFI 472
+Y+G GFI
Sbjct: 483 HYRGTYGFI 491
>gi|259417373|ref|ZP_05741292.1| type II and III secretion system protein [Silicibacter sp.
TrichCH4B]
gi|259346279|gb|EEW58093.1| type II and III secretion system protein [Silicibacter sp.
TrichCH4B]
Length = 442
Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 124/445 (27%), Positives = 217/445 (48%), Gaps = 30/445 (6%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
G + + +N+ ++++ V ++ +++P AD+ S RT+Y+ GK+ G + L+
Sbjct: 11 GTNAVLDVPMNRAVVVEADVPFAELSIANPGIADISSLSDRTIYVLGKSPGMTTLTLLDG 70
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
G + N+D+ + D++ + L++ + + I V +D +VL G V + Q QRA++L+
Sbjct: 71 SGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGTVSSAQRLQRALDLA 130
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
E + + +V NL+ + G QV LKV AE+ R + K +G I S
Sbjct: 131 ERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSMLIGSSDG 178
Query: 225 GPSKSFAAD---FGGKFVSEG---------GDFSVKGVLDRFSFETVLHALERATAIRTL 272
S + GG F ++ G + F +L ALE+ +RTL
Sbjct: 179 NVSTGTFLNRPEGGGVFGTDSPVNLKADTLGAAIFGFDIGAVQFNVLLEALEQKGLVRTL 238
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
AEP L+A+SGQ ASF +GG++ V+ G +V +G+ L+F P V+ I L +
Sbjct: 239 AEPNLSALSGQEASFLAGGEYPVP-VAQEEGVVTVEFKPFGIELNFIPRVVDGDLINLEL 297
Query: 333 QTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ VS + + ++ R+ TTVEL G + +AGL++D+ + +P L
Sbjct: 298 KAAVSAIDTTNAATFDGFSINAFSRRETATTVELRDGESFAIAGLIEDEFRDGAAQVPWL 357
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
+P+LGALFR++ + R ++E+ I + LV P L+ P D + F F R
Sbjct: 358 GDVPVLGALFRSADYERNQSELVIIVSAHLVTPTRGEALALPTDRIRPPSEKNLFLFGRT 417
Query: 449 NKIYGPKEASEVEGQNYKGAIGFIY 473
+ A EV Q++ G+ G++
Sbjct: 418 ERAQ-SGAAGEVANQDFNGSYGYLL 441
>gi|148258235|ref|YP_001242820.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
gi|146410408|gb|ABQ38914.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
Length = 497
Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 163/491 (33%), Positives = 266/491 (54%), Gaps = 31/491 (6%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
+R + + + NP++A + A +D +I + +++G+ K +++
Sbjct: 17 LRTAMVRALSFSAAAALTLNPALAPVIAADYHPAVTAAAADGQIN-ARFLALGVGKSVVI 75
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI ++RD+
Sbjct: 76 DLPRDIKDVLVADPKIANAVVRSSQRAYIIGATVGQTNIVFFDAQGQQIAAYDIAVKRDL 135
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
L++ + +S+I++E + D++VL G + ++Q+A EL+
Sbjct: 136 NGARAALKQLLPNSDIQIEGLGDSIVLSGSAASQIEAQQAGELAARLAGG---------- 185
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-AADFGGKFV 239
+ KV+N + + G DQV LKVT+AEV+R ++KQ+G S + F ++ +
Sbjct: 186 ADKVVNSITVRGRDQVMLKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFANSNPFTAYG 245
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
S + S + L A+E A IRTLAEP LTAISG+SA+F +GG+
Sbjct: 246 SNLVSNNAINASFGSSVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPAGY 305
Query: 300 SSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------------- 341
S T V +G+ L+FTP VL+ GRI LR+ TEVSE
Sbjct: 306 SCDPTTHVCTTQISFKKFGISLNFTPVVLAEGRISLRVMTEVSELSNENSITLSQAVTSS 365
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
VN+ +PS + R+A+TT+E+PSGG + +AGL++ +Q G+P L ++P+LG LFR+
Sbjct: 366 TVNSLTVPSIKTRRAETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGTLFRSR 425
Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
+ +TE+ + TPF+V+ VA +DLSRPDD ++ D +A +N+IYG E
Sbjct: 426 DYVNNQTELMVLVTPFVVRAVAQKDLSRPDDGFAAASDRQADLLGSINRIYGVPGRVEP- 484
Query: 462 GQNYKGAIGFI 472
G++Y+G GFI
Sbjct: 485 GRSYRGTYGFI 495
>gi|170740621|ref|YP_001769276.1| type II and III secretion system protein [Methylobacterium sp.
4-46]
gi|168194895|gb|ACA16842.1| type II and III secretion system protein [Methylobacterium sp.
4-46]
Length = 501
Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 145/460 (31%), Positives = 243/460 (52%), Gaps = 16/460 (3%)
Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
+ A V++I E ++I + + +++ +P D ++V V++P A+ VV S
Sbjct: 44 RAEKAPAIAAPVLSIGPQEAEIARRIDLTQGRSLVIDLPRDAKEVFVANPKVANAVVRST 103
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
R +++ G G ++ ++ +G+Q+ +LD+ + RD+ L TL + + V D+
Sbjct: 104 RKVFIIGVENGATSIFVMDAEGRQIASLDVTVGRDLNILRQTLATSLPSARFEVRPAGDS 163
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
++L G V + ++Q+A++++ F+ + V+N + I G+DQV L+VT+ E
Sbjct: 164 ILLSGTVNSATEAQQALDIANAFVG----IAGGTVTRGAVINNITIRGKDQVMLRVTVVE 219
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
V R +LKQ G S + S + + G S + L A E
Sbjct: 220 VSRTVLKQFGVSLSGSWSGLNLTNATQFALNGDRGLGNLIEGTINGGAGASLKATLKAFE 279
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLHFTP 320
+A R LAEPTLTAISG+SA FT+GG+ + S + +T YGVVL+FTP
Sbjct: 280 QAGVSRILAEPTLTAISGESAKFTAGGEIAVPSGLSCTTANNCIPGITFKQYGVVLNFTP 339
Query: 321 TVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
VLS RI +R+ T+V+E G + +P + +RK++TT+EL SG TI+ AG
Sbjct: 340 VVLSENRISIRVGTDVTEIDQQNAYSYNIGTTSTSVPGFTIRKSETTIELASGATIMTAG 399
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
L++ + G+P L +P+LGALFR+ + R+ETE+ I TP++ K + ++ RPDD
Sbjct: 400 LIQQKNKAAVMGLPALMNLPVLGALFRSRDYQRDETELMIMVTPYIAKAMDPGEVKRPDD 459
Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
+ D +A R N++YG A+ + + Y+G GFI
Sbjct: 460 GFVDATDGQAILLGRFNRLYGVVGAAPLAPKAYRGKFGFI 499
>gi|116249981|ref|YP_765819.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254629|emb|CAK05703.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 501
Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 223/487 (45%), Positives = 309/487 (63%), Gaps = 29/487 (5%)
Query: 12 MSIFLFSSNPS----VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I + P+ + + + +++ IS +++ +GLNK +++ +P D
Sbjct: 20 LAIGVSGMVPASFATLFAAGEARADSDSLVRISQTGSNAHRRLKLGLNKAVVVDLPEDAH 79
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE+ L
Sbjct: 80 DILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNL 139
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182
RRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL ++S
Sbjct: 140 RRFIRDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 199
Query: 183 ------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPS 227
+V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + + +G +
Sbjct: 200 SVALFAEGRQSSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQL 259
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
S +AD V G K + ++ T L+ALE+A ++TLAEPTLTAISGQ+A+F
Sbjct: 260 GSPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATF 319
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
SGGQ LY T S G +V +YG+ L F P VLS GRI L+I+T VSEPV G
Sbjct: 320 NSGGQQLYSTT-DSDGNVTVVPFNYGINLAFKPVVLSSGRISLQIKTNVSEPVAGSGNAT 378
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+E
Sbjct: 379 ---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQE 435
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
TE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G
Sbjct: 436 TELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHG 494
Query: 468 AIGFIYK 474
+IGFIYK
Sbjct: 495 SIGFIYK 501
>gi|85705151|ref|ZP_01036251.1| bacterial type II/III secretion system protein [Roseovarius sp.
217]
gi|85670473|gb|EAQ25334.1| bacterial type II/III secretion system protein [Roseovarius sp.
217]
Length = 428
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 123/440 (27%), Positives = 208/440 (47%), Gaps = 33/440 (7%)
Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
+N+ ++++ ++ +++P AD S RT+Y+ GK G+ + L G+ + N+D
Sbjct: 1 MNRAVVVESDSPFAELSIANPAIADFSTLSDRTIYVLGKTPGRTTLSLFDGAGQLITNID 60
Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
+ + DI + L++ + I V +D +V+ G V + QRA++L+E +
Sbjct: 61 VHVSTDIEEFKERLKQILPGEPIEVRSANDGIVISGTVSSSSRMQRALDLAERY------ 114
Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
+ ++V NL++++G+ QV LKV AE++R + K + SI + F
Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKALSTSLSIDARGANQVGVFGGT 168
Query: 234 FGGKFVS---------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ G F+ + +L ALE +RTLAEP LT
Sbjct: 169 NTTNTLGGVLGSTAGTIPGANDNNGVFNFGFDVGSVEVGILLEALETKGVVRTLAEPNLT 228
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
A+SGQ A F +GG+ V+ T+V +GV L+F P V+ G I L + VS
Sbjct: 229 ALSGQEAKFLAGGEFPVP-VAQDNDTTTVEFKPFGVELNFVPRVVDDGIINLEMAAAVSS 287
Query: 339 PVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
+ +P++R R TTV L G + +AGLL+DD + +P L +P+L
Sbjct: 288 IDTSNSLVSDGFSIPAFRRRDTSTTVALRDGESFAIAGLLQDDFRDNAGQVPWLGDVPVL 347
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV-NKIYG 453
GALFR++ + R +TE+ I + LV P L+ P D + + F RV N +
Sbjct: 348 GALFRSADYQRSQTELVIIVSAHLVSPSRGEALALPTDRVKLPSEKDLFLNGRVANGVSD 407
Query: 454 PKEASEVEGQNYKGAIGFIY 473
EV Q++ G+ G++
Sbjct: 408 RGAVGEVAKQDFTGSYGYVM 427
>gi|254475652|ref|ZP_05089038.1| type II and III secretion system protein:Transport-associated
[Ruegeria sp. R11]
gi|214029895|gb|EEB70730.1| type II and III secretion system protein:Transport-associated
[Ruegeria sp. R11]
Length = 452
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 122/465 (26%), Positives = 223/465 (47%), Gaps = 33/465 (7%)
Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
+P + A A + + G + + +N+ ++++ V ++ +++P+ AD+ S R
Sbjct: 3 MPSAQGAWAEGLRVVKK--GTSSNLEVPMNRAVVVESDVPFSELSIANPSIADISSLSDR 60
Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
T+Y+ GK+ G + G G+ + N+D+ + D++ + LR+ + I V +D +
Sbjct: 61 TIYVLGKSPGPDHPHAFGCVGRLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGI 120
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
VL G+V + QRA++L+E + + +V NL+++ G QV LKV AE+
Sbjct: 121 VLSGVVSSSARLQRALDLAERY------------APDRVSNLMSVGGVQQVMLKVRFAEM 168
Query: 206 RRDILKQIGFQHSITG-------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+R + K + + G ++ G + G F
Sbjct: 169 QRTVSKSLSASLGVNGGNSVGVNGGTSTLNTQGALTNSLTGNIPAANDNTGAFVFGFNAG 228
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
F +L ALE+ +RTLAEP L+A+SGQ A F +GG++ V+ G ++ +
Sbjct: 229 AFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDGVITIEFKPF 287
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTI 368
G+ L+F P V+ I L ++ VS N + ++ R++ TTVE+ G +
Sbjct: 288 GIELNFIPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRESVTTVEMRDGESF 347
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
+AGL++D+ + +P + +P+LG+LFR++ + R +TE+ I + LV P LS
Sbjct: 348 AIAGLIRDEFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLVTPTRGEALS 407
Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
P D + F F V + ASEV Q++ G+ G++
Sbjct: 408 LPTDRIRPPSETDLFLFGNVAR-ERKGPASEVAKQDFNGSYGYVL 451
>gi|110636321|ref|YP_676529.1| type II and III secretion system protein [Mesorhizobium sp. BNC1]
gi|110287305|gb|ABG65364.1| type II and III secretion system protein [Chelativorans sp. BNC1]
Length = 516
Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats.
Identities = 191/495 (38%), Positives = 277/495 (55%), Gaps = 50/495 (10%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
P I + A + +V +++ +GLNK ++L +P D D+LV++P AD V + R
Sbjct: 25 PVIIPSAARGEGVIEVSGAGTERLKLGLNKTLVLDLPSDAYDILVANPAVADAVTRTARR 84
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+YLFGK VG+ N+ + G G+Q+ +D+ +ERD+A LE L+RFI +SNI VE+++D VV
Sbjct: 85 IYLFGKQVGETNIFVFGAGGEQIARIDVAVERDVAGLEQYLKRFIPNSNIDVELINDNVV 144
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQY---------------------ANSSSKKVM 185
L G V T D+ RA +L+ F++ + K++
Sbjct: 145 LTGTVETPLDASRAAQLATIFVTGGEATTGQYSQTAAAPTDGGGVAISNPDSARQVSKIV 204
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
N+L I GEDQVTLKVT+AEV R ++KQ+G +GS G S D +
Sbjct: 205 NMLQIIGEDQVTLKVTVAEVSRSVMKQLGVNMIGSGSLDGISWGAIVDSPYGLGAPASAS 264
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----------- 294
+ L + L+A+E+A ++TL+EPTLTAISG+ A+F GG+
Sbjct: 265 QLA--LGGSLLQGYLNAMEQAGVMKTLSEPTLTAISGEKATFKVGGEFNLVTGQKVEQGD 322
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---------- 344
+ V DYG+ L FTPTVLSPGRI L+++T VSEP +
Sbjct: 323 ASKGQADQLTYEVEKIDYGIGLEFTPTVLSPGRISLKVRTSVSEPTFEGSFSLGSPSIGG 382
Query: 345 -----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ S R R ADTTVELPSGG++++AGL++DD++Q G+P LSKIPILG LFR
Sbjct: 383 RFNSPGMNALSIRKRLADTTVELPSGGSMMIAGLVRDDVRQTINGLPGLSKIPILGTLFR 442
Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
+ F R ETE+ I TP+L +PVA L+RPDD+++ D F RVN+IYG + +
Sbjct: 443 SRDFVRNETELVIIITPYLARPVARTALARPDDNFNPPSDGAGIFLGRVNRIYGAMKTNL 502
Query: 460 VEGQNYKGAIGFIYK 474
+G+ Y G +G+IYK
Sbjct: 503 PKGR-YHGVVGYIYK 516
>gi|90419764|ref|ZP_01227673.1| Flp pilus assembly protein, secretin CpaC (type II and type III
secretion system) [Aurantimonas manganoxydans SI85-9A1]
gi|90335805|gb|EAS49553.1| Flp pilus assembly protein, secretin CpaC (type II and type III
secretion system) [Aurantimonas manganoxydans SI85-9A1]
Length = 540
Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats.
Identities = 190/535 (35%), Positives = 279/535 (52%), Gaps = 70/535 (13%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
+R R +M+ + P LP +A V+N+ + I++GLNK ++
Sbjct: 15 LRARLRKLVVVMAAASTALAPLATTLP--AQAEQTVVNVRQG----SQSINLGLNKTKVI 68
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ D D+LV++P AD V R +Y+FGK +GQ N+++ +Q+ ++D+ IERDI
Sbjct: 69 VLEADAHDILVANPAVADAVTRDARRIYIFGKQIGQTNIVVFDRQNRQIASIDLKIERDI 128
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY---- 176
LE T+R+++ S ++VEM++D VVL+G V+T QD+ + L+ F++
Sbjct: 129 NGLEATIRKYVPSSVVQVEMLNDNVVLNGTVQTPQDAAKVERLARLFVTGGEGTTGQYIQ 188
Query: 177 -------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
+ +++NLL I GEDQVTLKVT+AEV+R ++KQ+G
Sbjct: 189 QATASGGAGGGDGDVGFAQEDRRQSQIVNLLQIQGEDQVTLKVTVAEVQRSVVKQLGINS 248
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
+ + G S + G + F L+A+E+A +RTLAEP+L
Sbjct: 249 TAGKGVTYGQTDSPFALGKALSS--SMLASAGSIGGFDITAQLNAMEQAGVMRTLAEPSL 306
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV-----------------------------T 308
TAISG+ ASF GG+ S T T
Sbjct: 307 TAISGEKASFKVGGEFTVPDAQSYDPGTPARREFQGYDGSGQAIYDTIPAEPPTRSIDKT 366
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMPSYRVRKADTT 359
+YG+ L FTP VLSPGRI L+I+T VSEP R R ADTT
Sbjct: 367 RVEYGIGLDFTPVVLSPGRISLKIRTAVSEPTFEMPFNISGGKDGGVGTVGIRKRLADTT 426
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VELPSGG++V+AGL++D+++Q+ G P LSKIP+LG LFR+ F R ETE+ I TP+LV
Sbjct: 427 VELPSGGSLVIAGLVRDEVRQVMSGFPGLSKIPVLGTLFRSRDFQRYETELVIIVTPYLV 486
Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
+PV + L+RPDD +++ D A F RVN++YG E G+ Y G +GFIYK
Sbjct: 487 RPVPRQALARPDDGFALSSDGAANFLGRVNRVYGHMETKLPPGR-YHGVVGFIYK 540
>gi|299132286|ref|ZP_07025481.1| type II and III secretion system protein [Afipia sp. 1NLS2]
gi|298592423|gb|EFI52623.1| type II and III secretion system protein [Afipia sp. 1NLS2]
Length = 490
Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats.
Identities = 162/482 (33%), Positives = 259/482 (53%), Gaps = 23/482 (4%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK--GKKISIGLNKVIILQVPVD 65
+S S+ + L P+ + V + S + + +G++K +++ +P D
Sbjct: 13 IARALSFVAVSALILNSSLSPVLATDYQVASASTASADSLNARSLRLGISKSLVVDLPRD 72
Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
V+DVLV+DP A+ VV S R Y+ G VGQ N+I DG+QM D+ + RD+ +
Sbjct: 73 VKDVLVADPKIANAVVRSSRRAYIIGAAVGQTNIIFFDADGQQMAAYDVAVTRDLNGIRT 132
Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
+ + + S+I+VE + D VVL G ++Q+A EL+ + + ++ V+
Sbjct: 133 AIHQALPQSDIQVEGLGDGVVLTGSAANQAEAQQAYELAARLIGGP------SKANDLVV 186
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---EG 242
N + + G DQV LKVT+AEV+R+I+KQ+G S S F +
Sbjct: 187 NNITVRGRDQVMLKVTVAEVQRNIVKQLGVDLSGKFSYGTAVVDFNNANQFSALGHALAP 246
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---- 298
+ S + L A+E A +RTLAEP LTAISG+SA+F +GG+ T
Sbjct: 247 DNAISTSFGSAPSVKATLRAMESAGVVRTLAEPNLTAISGESATFIAGGEFPIPTGITCQ 306
Query: 299 ----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPS 350
+SS S+ +G+ L+FTP VL+ GRI LR+ TEVSE V+ +PS
Sbjct: 307 TAAGTSSNCQPSIAFKKFGISLNFTPVVLTEGRISLRVMTEVSEISNDNSLTVSGMTIPS 366
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ R+A+TT+E+PSGG++ +AGL+++ +Q G+P L+++P+LG LFR+ F +TE+
Sbjct: 367 IKTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGLAQLPVLGTLFRSRDFINNQTEL 426
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
+ TP++V+ VA +DLSRPDD ++ D + + +IYG +Y+G G
Sbjct: 427 MVLVTPYVVRAVAQKDLSRPDDGFASASDPQTVLLGNITRIYGVPRREGQASSSYRGKYG 486
Query: 471 FI 472
FI
Sbjct: 487 FI 488
>gi|85713505|ref|ZP_01044495.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A]
gi|85699409|gb|EAQ37276.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A]
Length = 477
Score = 342 bits (878), Expect = 6e-92, Method: Composition-based stats.
Identities = 163/486 (33%), Positives = 260/486 (53%), Gaps = 41/486 (8%)
Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
+ L P+ ++ V + + +S+G+ K +++ +P DV+DVLV+DP
Sbjct: 1 MGAFTLNPALAPVFASDYRVSAATTGAKMHTQSLSLGIGKSVVVDLPRDVKDVLVADPKI 60
Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
A+ VV S + Y+ G VGQ N+I G+Q+ DI + RD+ L L++ + ++ I
Sbjct: 61 ANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQQISAYDIAVTRDLNGLRAALKQLLPNAAI 120
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+V+ + D V+L G V + ++Q+A +L+ +KV+N + + G DQV
Sbjct: 121 KVDGLGDGVMLSGWVSSPIEAQQAGDLAARLADGV----------QKVVNNIAVRGRDQV 170
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVLDRF 254
LKVT+AEV R I+KQ+G S + +F+ F ++ G
Sbjct: 171 MLKVTVAEVARTIIKQMGIDLSANMNYGTAVVNFSNSNPFTALGRPLVSGNNLSGSAGLT 230
Query: 255 SF--------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+ + L A+E A IRTLAEP LTAISG+SA+F SGG+ S
Sbjct: 231 NLLPGQAGYPGVVPSVQATLRAMESAGVIRTLAEPNLTAISGESATFISGGEFPIPAGYS 290
Query: 301 STGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---------NAG 346
AT V +G+ L+FTP VL+ GRI LR+ TEVSE N+
Sbjct: 291 CDPATRVCLTQIRFKKFGISLNFTPVVLTEGRISLRVMTEVSELSTENAMTITQTIGNSL 350
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+PS R R+A+TT+E+PSGG++ +AGL+++ +Q G+P L+++P+LGALFR+ +
Sbjct: 351 TVPSIRTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGLTQLPVLGALFRSRDYVNG 410
Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+TE+ + TP++V+ VA +DLSRPDD ++ D ++ +N+IYG E ++Y+
Sbjct: 411 QTELVVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSINRIYGAPGRVEPA-RHYR 469
Query: 467 GAIGFI 472
G GFI
Sbjct: 470 GTYGFI 475
>gi|302037439|ref|YP_003797761.1| putative pilus assembly protein CpaC [Candidatus Nitrospira
defluvii]
gi|300605503|emb|CBK41836.1| putative Pilus assembly protein CpaC [Candidatus Nitrospira
defluvii]
Length = 485
Score = 342 bits (878), Expect = 6e-92, Method: Composition-based stats.
Identities = 135/487 (27%), Positives = 220/487 (45%), Gaps = 41/487 (8%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L + L + A A + D++ + +S+ K ++L P+ +++P
Sbjct: 11 TLRGIGSGLFALFLVTVAQAHEVASPDIQTRVPRSLSLITGKSLVLDSPIPFSRASIANP 70
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
AD +V SP+ +Y+ GK G N+ L +G D+ + D+ L+ L + D
Sbjct: 71 DIADTLVLSPKQLYVIGKAAGTTNLTLWDAEGSVYALYDLAVSPDLTRLKEHLHQLFPDE 130
Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
N ++V D + L G V + AV+++ET+ + +KV+NLL + G
Sbjct: 131 NDLQVMAAHDRLTLTGTVSSATHVSEAVDVAETY------------ARQKVINLLRVGGL 178
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------PSKSFAADFGG 236
QV L+V +AE+ R +L+++G + PS + A G
Sbjct: 179 HQVMLEVRVAEMERTLLRRLGVNLAAASGGQSFGVSSLKNLATVLPPTDPSAALVAGPVG 238
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
VS+ + ++ S+ + AL+ ++ LAEPTL A+SGQ A F +GG+
Sbjct: 239 LGVSQAVNALLRFQTGSTSWTGFIDALKEENLVKVLAEPTLVALSGQEAHFLAGGEFPIP 298
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYR 352
V + G T++ +G+ L+F P VLSP RI + + EVS+ +P+
Sbjct: 299 -VPQAFGVTTIQFKKFGIQLNFNPVVLSPTRISVTVAPEVSDLDFANGLSLQGFVVPAIT 357
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R+A T VEL G + +AGLL+D +++ P+L IPILGALFR+S F + ETE+ I
Sbjct: 358 TRRASTVVELEDGQSFAVAGLLRDTVRETVSKFPVLGDIPILGALFRSSSFQKNETELVI 417
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG------QNYK 466
TP LV PV +L P Y DD + R+
Sbjct: 418 IVTPHLVTPVTEAELPLPTGQYLEPDDVDFYLMGRLQSRKDKVRTPLPPATQLPFEDRLA 477
Query: 467 GAIGFIY 473
G +G +
Sbjct: 478 GPVGHMM 484
>gi|157375508|ref|YP_001474108.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis
HAW-EB3]
gi|157317882|gb|ABV36980.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis
HAW-EB3]
Length = 483
Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats.
Identities = 113/435 (25%), Positives = 200/435 (45%), Gaps = 20/435 (4%)
Query: 42 VEIGKGKKIS-IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
G + I I + K +L++ + V V +P D+ + +Y+ GK +G N++
Sbjct: 31 GPTGASRDIKHIPIFKSRVLKLKQAIHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIM 90
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+ + + + +DI I D+ L+ L F+ + V+ +++ G +Q A
Sbjct: 91 VWDKNEQLVDVIDIEITHDLNGLKTRLHEFLPGEKLGVQTSQGQLLISGQASNLQKMNTA 150
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
VEL++ + + + V+N++ + G+ QV L+V IAEV++++ +Q + I
Sbjct: 151 VELAQAYADAASV----SKVKSTVLNMMTVGGDHQVMLEVVIAEVQKEVARQFDSKFFIF 206
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEP 275
A G + +G L ++ + LAEP
Sbjct: 207 NKGDKGFIGTAGAGGTFDLDPAAAIDSRGFFARYLDGNLMMNFALDVAKQHGLAKVLAEP 266
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+TA+SGQSA F SGG+ V + G+T++ D+GV + F P+VL G+I L +
Sbjct: 267 NVTAMSGQSAEFLSGGEFPIP-VPGTNGSTTIQYRDFGVGVKFVPSVLDSGQINLNLNVM 325
Query: 336 VSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE + +PS R TTVEL G TI ++GL+ D +++ + +P
Sbjct: 326 VSEVSNANSVTLSGGSNTALVVPSIVKRTTATTVELADGQTIAISGLISDTLRENIDKLP 385
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
L IPILG LF + F ++E+ I TP LV+P + +S P D + + D + +
Sbjct: 386 GLGDIPILGQLFTSKSFQSGQSELVILVTPRLVRPFNKKQISLPTDDFVLPSDMEFYLLG 445
Query: 447 RVNKIYGPKEASEVE 461
+++ +E E
Sbjct: 446 KMSHKQSEQEKHETP 460
>gi|89053488|ref|YP_508939.1| type II and III secretion system protein [Jannaschia sp. CCS1]
gi|88863037|gb|ABD53914.1| type II and III secretion system protein [Jannaschia sp. CCS1]
Length = 466
Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats.
Identities = 134/461 (29%), Positives = 224/461 (48%), Gaps = 29/461 (6%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
PI A A + + + E + + +N+ ++++ + ++ V++P AD+ S R+
Sbjct: 20 QPISGAQAQGLRVVEGE--STGTLRVPMNRAVVVEAEMLFAELSVANPAIADIATLSERS 77
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+Y+ G+ G+ + L+G DG + N++I + D+A L LR I + V +D +V
Sbjct: 78 IYVLGRAPGRTTMTLLGADGSLIANVEIQVVPDVAELRERLREIIPGEPVEVRTANDGIV 137
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L G V + RA+EL+E + + ++ NL+ + G+ QV L+V AE++
Sbjct: 138 LSGTVGSAFAVDRAMELAERY------------APGRISNLMMVGGQQQVMLQVRFAEMQ 185
Query: 207 RDILKQIGFQHSIT------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
R + +++ I G+ G + + G G V
Sbjct: 186 RTVRQELSASLGIGSTGGNFGTSVGAGNLQGGTGFGTGNLPGGLDGRNGGIGVSFAAGGL 245
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
+L ALE +RTLAEP LTA+SG +ASF +GGQ T S S G T + D+GV
Sbjct: 246 QLSVLLEALESNGMVRTLAEPNLTALSGATASFLAGGQFPVPTESESGGTT-IEFVDFGV 304
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
L FTPTV+ I L + E+S + P+ R A T VE+ G + +AGLL
Sbjct: 305 QLDFTPTVVGDHVINLALDAEISSIGEIIATTGAPAINTRNASTVVEMRDGDSFAIAGLL 364
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
+DD +P L +P+LGALFR++ ++R ++E+ I T LV PV L+ P D
Sbjct: 365 QDDFTNSVAEVPWLGDLPVLGALFRSASYSRSQSELVIIITAHLVSPVNGEALALPTDRV 424
Query: 435 SVEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFIY 473
+ +++ FF +V A +V Q++ G+ G++
Sbjct: 425 RIPTESELFFQGQVTGSSPRPGTAAGDVAQQDFSGSYGYVL 465
>gi|118589703|ref|ZP_01547108.1| pilus assembly protein [Stappia aggregata IAM 12614]
gi|118437789|gb|EAV44425.1| pilus assembly protein [Stappia aggregata IAM 12614]
Length = 483
Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats.
Identities = 172/473 (36%), Positives = 273/473 (57%), Gaps = 18/473 (3%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
++ L A + + + ++I+ E G+ +++G+ + +++ + D D
Sbjct: 22 LAATAVLLGGLMGVSAPVAQAEGNFPSQVHIAAGERATGRILNVGVGRSVVINLAEDAAD 81
Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
VLVS+P AD V+ +PR +++ G GQ+ ++L G+++ + D+ +E+D + + +R
Sbjct: 82 VLVSNPEIADAVLRTPRRIFVIGNTAGQSRLVLFSRSGRELASFDVRVEKDTSDITRIIR 141
Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
+ I SNI E ++ +VVL G ++ ++Q+A +++ F +S+ +V+NL+
Sbjct: 142 KLIPGSNIFAESINGSVVLSGTAKSTLEAQQAADIAAKF--------QGAASASEVVNLI 193
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
++AG+DQV LKVT+AEV R I+KQ+G Q T + ++ + +V
Sbjct: 194 SVAGKDQVHLKVTVAEVERSIIKQLGVQFQGTIGIGNFTPFMSSLPNFTVNPTIVNQAVG 253
Query: 249 GV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
G S + AL+R IRTLAEPTLTAISG++ASF +GG+ G
Sbjct: 254 GTQLTAGATSITAQVEALQREGVIRTLAEPTLTAISGENASFLAGGEFPIPIS-QRDGEL 312
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVE 361
SV +GV L FTP VLS GRI LR++TEVSE + + + +VR+A++T+E
Sbjct: 313 SVEFKKFGVGLDFTPVVLSEGRISLRVKTEVSELSNDGAVSAGGITISALKVRRAESTME 372
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
LPSGGT+V+AGLL++ QQ EG+P L +IPILGALF++ F RE+TE+ + TP++V+P
Sbjct: 373 LPSGGTLVMAGLLQESYQQAIEGVPGLMQIPILGALFKSRDFLREQTELAVFVTPYVVQP 432
Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
VA+ L RPD + DA F NR+NKIY P A+ Y G +GFIYK
Sbjct: 433 VAVSKLQRPDKNLMAPSDAGTIFLNRLNKIYNPTGAA--AEGTYHGQVGFIYK 483
>gi|316933039|ref|YP_004108021.1| type II and III secretion system protein [Rhodopseudomonas
palustris DX-1]
gi|315600753|gb|ADU43288.1| type II and III secretion system protein [Rhodopseudomonas
palustris DX-1]
Length = 478
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 148/480 (30%), Positives = 259/480 (53%), Gaps = 21/480 (4%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
R+ ++ ++ A+ + + +++G+ K +++ +
Sbjct: 8 RSTRSLRGTAIALSTAAVLTLIPAWTAAHASDYRAAPAASGGLNAQSVALGIGKSMVIDL 67
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
P D++DVLV+DP A+ V+ S + Y+ G VGQ N++ G+Q+ DI + RD+
Sbjct: 68 PRDIKDVLVADPKIANAVIRSAQRAYIIGAAVGQTNIVFFDSTGRQIAAYDIAVTRDLNG 127
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
+ L++ + ++I+VE + + V+L+G V + ++Q+A +L+ + K
Sbjct: 128 IRTALKQTLPTADIQVEGLGEGVMLNGSVASPIEAQQAFDLAARLVGDD----------K 177
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
KV+N + + G DQV LK+T+AEV+RDI+KQ+G S + +F
Sbjct: 178 KVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGTAVVNFNNTNPFTQSGSA 237
Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ S L A+E A +RTLAEP LTAISG+ A+F +GG+ +
Sbjct: 238 LVPNNALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAISGEPATFLAGGEFPVPSGV 297
Query: 300 SSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYR 352
+ T SV +G++L+FTP V++ GRI L++ TEVSE +N+ +PS +
Sbjct: 298 TCTNGVCTPSVVFKKFGILLNFTPVVMTAGRISLKVMTEVSEVSSDNAVVINSLSVPSIK 357
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R+ ++T+E+PSGG++ +AGL+++ +Q G+P +++PILG LFR+ + +TE+ +
Sbjct: 358 TRRVESTLEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLPILGTLFRSRDYINRQTELMV 417
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
TP++V+ VA +DLSRPDD ++ D ++ +NK+YG SE + Y+G GFI
Sbjct: 418 LVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSLNKLYGAPGRSEPA-RTYRGRFGFI 476
>gi|240139026|ref|YP_002963501.1| putative pilus assembly protein; putative precursor
[Methylobacterium extorquens AM1]
gi|240008998|gb|ACS40224.1| putative pilus assembly protein; putative precursor
[Methylobacterium extorquens AM1]
Length = 502
Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats.
Identities = 154/494 (31%), Positives = 252/494 (51%), Gaps = 33/494 (6%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEA----NAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ I ++ P +A + V+ I E +++ + + +I+ +P
Sbjct: 10 LALLLISGAGLASAMLSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPR 69
Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
D ++V V++P A+ VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L
Sbjct: 70 DAKEVFVANPAVANAVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLR 129
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
+L++ + V+ V D++VL G V + ++Q+A++++ F+ + A + V
Sbjct: 130 QSLQQSLPGGRFDVKAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--V 187
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------SKSFAADFGGKF 238
+N L I +DQV ++VT+ EV R +LKQ G S S+ P + + G
Sbjct: 188 INNLTIRNKDQVMIRVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFPLTGSR 247
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-- 296
+ + FSF+ L A E+A R LAEPTLTAISG+SA FT+GG+
Sbjct: 248 SPDANALTASVQTGGFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLS 307
Query: 297 ----------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-- 344
T S ++T YGV L FTP V++ RI +RI T+V + +
Sbjct: 308 CSAASTVSIGTSVSQGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFT 367
Query: 345 ------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
+P R ++TTVEL SG T++ AGL++ + G+P L +PILGALF
Sbjct: 368 YYLNDRPTPVPGTTKRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALF 427
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
R+ + R+ETE+ I TP++ +P+ R + RPDD + D +A R+NKIYG
Sbjct: 428 RSRDYQRDETELMIMVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGG 487
Query: 459 EVEGQNYKGAIGFI 472
+ G Y+G +GFI
Sbjct: 488 TL-GPAYRGRVGFI 500
>gi|294140774|ref|YP_003556752.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
gi|293327243|dbj|BAJ01974.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
Length = 484
Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats.
Identities = 121/436 (27%), Positives = 207/436 (47%), Gaps = 21/436 (4%)
Query: 42 VEIGKGKKISI-GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
G + I + + K IL + V V V +P D+ + +Y+ GK +G N++
Sbjct: 31 GPTGASRDIMLIPIFKSRILNLKQTVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIM 90
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+ + + + +DI I D+ L++ L F+ + V+ +++ G +Q A
Sbjct: 91 IWDENERLVDVIDIEITHDLNGLKLRLHEFLPGEKLGVQTSQGHLLISGQASNLQKMNTA 150
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
VEL++ + + ++ ++ V+N++ + G+ QV L+V IAEV+R++ +Q + I
Sbjct: 151 VELAKAYADAASVSKVNST----VLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIF 206
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEP 275
G S S A + S +G D L ++ + LAEP
Sbjct: 207 GQGSKLSGGTAGGGATFDLDPAAAISNRGFFARYINDNLLMNFALDVAKQNGLAKVLAEP 266
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+TA+SGQSA F SGG+ V + G+T++ D+GV + F PTVL G+I L +
Sbjct: 267 NVTALSGQSAEFLSGGEFPIP-VPGTNGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVI 325
Query: 336 VSEPVIGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
VSE + +PS R TTVEL G TI ++GL+ D +++ + +
Sbjct: 326 VSEVSNANSVSLSGGGSNATLIVPSIVKRTTSTTVELADGQTIAISGLINDTLRENIDKL 385
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
P L IPILG LF + F ++E+ I TP LV+P + +S P D + + D + +
Sbjct: 386 PGLGDIPILGQLFTSKSFKSGQSELIILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLL 445
Query: 446 NRVNKIYGPKEASEVE 461
+++ E SE
Sbjct: 446 GKMSHKKQDSERSETP 461
>gi|254561621|ref|YP_003068716.1| pilus assembly protein [Methylobacterium extorquens DM4]
gi|254268899|emb|CAX24860.1| putative pilus assembly protein; putative precursor
[Methylobacterium extorquens DM4]
Length = 502
Score = 339 bits (868), Expect = 8e-91, Method: Composition-based stats.
Identities = 153/480 (31%), Positives = 246/480 (51%), Gaps = 29/480 (6%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
P A + V+ I E +++ + + +I+ +P D ++V V++P A+
Sbjct: 24 MLPGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L +L++ + V
Sbjct: 84 AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDV 143
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ V D++VL G V + ++Q+A++++ F+ + A + V+N L I +DQV +
Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGP------SKSFAADFGGKFVSEGGDFSVKGVLD 252
+VT+ EV R +LKQ G S S+ P + + G + +
Sbjct: 202 RVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFPLTGSRSPDANALTASVQTG 261
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------------TVSS 300
FSF+ L A E+A R LAEPTLTAISG+SA FT+GG+ T S
Sbjct: 262 GFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVS 321
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYR 352
++T YGV L FTP V++ RI +RI T+V + + +P
Sbjct: 322 QGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTT 381
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I
Sbjct: 382 KRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMI 441
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
TP++ +P+ R + RPDD + D +A R+NKIYG + G Y+G +GFI
Sbjct: 442 MVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500
>gi|304392384|ref|ZP_07374325.1| type II and III secretion system protein [Ahrensia sp. R2A130]
gi|303295488|gb|EFL89847.1| type II and III secretion system protein [Ahrensia sp. R2A130]
Length = 544
Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats.
Identities = 184/498 (36%), Positives = 271/498 (54%), Gaps = 30/498 (6%)
Query: 6 RTFFTMMSIFLFSSNPS-----------VAKLPPIKEANAAVINISDVEIGKGKKISIGL 54
R F S P + A+ I I+ K + +GL
Sbjct: 48 RGFMAWSLATALSFAPVLHPIHEMGVAKAQTVAGELRADKNHIVITARNARVPKLVRLGL 107
Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114
+K +++ +P DVLV++P AD V+ + + +YLFGK VGQ NV + + G Q+ L+I
Sbjct: 108 DKSLVVDLPSVANDVLVANPGVADAVMRTSQRLYLFGKQVGQTNVFVFDNGGNQIAALEI 167
Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
LIERDI+ LE TL R I +S+I+ EM++D +VL G V T DS +A L++ F+ +
Sbjct: 168 LIERDISGLEETLSRLIPNSDIQAEMINDNIVLTGRVSTPSDSTKAQSLAQIFVRGGEQT 227
Query: 175 QY--------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
++ + +++NLL I GEDQV LKV+I E++R ++KQ+G S+T ++ G
Sbjct: 228 TNPAQQSSIFGDAPTSEIVNLLKIDGEDQVMLKVSIVEIQRSVVKQLGITTSLTNAAEGG 287
Query: 227 SKSFAADFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
G G S V + + + L L+ IR LAEPTLTAISG++
Sbjct: 288 FGFSTIAGGSVRNIAGAGLRGSANIVSGQNTLDAQLRVLDHTGMIRMLAEPTLTAISGEA 347
Query: 285 ASFTSGGQHLYKTV---SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-- 339
A F +GG + + + YGV L F PTVL+ GRI L+++TEV EP
Sbjct: 348 AEFRAGGTYQAPQQIERDENGTSIEYEERQYGVSLQFIPTVLTEGRISLKLKTEVKEPSL 407
Query: 340 ---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ + R R A TTVELPSGG++ +AGL++DD++Q G P LSK+PI GA
Sbjct: 408 HGSTGRSSDAGLFGTRERVASTTVELPSGGSMAIAGLIQDDLRQNISGFPGLSKLPIFGA 467
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
LFR+ F+R ETE+ I TP+LV+PVA L+ PD+ + + F RVN++YG K+
Sbjct: 468 LFRSREFHRSETELVIIVTPYLVRPVARAKLANPDEGFQPASEPAGIFMGRVNRVYGTKQ 527
Query: 457 ASEVEGQNYKGAIGFIYK 474
+ +G+ Y G+IGFI K
Sbjct: 528 GNLPKGR-YTGSIGFILK 544
>gi|260461949|ref|ZP_05810194.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
gi|259032196|gb|EEW33462.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
Length = 505
Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 191/514 (37%), Positives = 294/514 (57%), Gaps = 49/514 (9%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
MR + + F + + EA + + + +++ +GLNK +++
Sbjct: 1 MRLSGK--LPAIVAAAFGLLLVGTNVQGVVEAKSTQVTATT----ASQRVKLGLNKSVVI 54
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+P D D+LV++P+ AD V + R +YLFGK VG+ N+ + G +G+Q+ +LD+ +ERD+
Sbjct: 55 DLPSDAYDILVANPSVADAVTRTARRIYLFGKAVGETNIFVFGPNGEQIASLDLAVERDV 114
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA--- 177
A LE +RRFI S+I+VE+++D VVL G V T DS+RAV+L+ F+S
Sbjct: 115 AGLEDYIRRFIPTSDIKVELLNDNVVLTGTVDTPLDSKRAVDLATIFVSGGEATTGQYSQ 174
Query: 178 ------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ K++NLL I G+DQVTLKVT+AEV R ++KQ+G
Sbjct: 175 TAAGGSAQSGVDINNPDQERRTSKIVNLLQIIGDDQVTLKVTVAEVSRSVMKQLGVNMVG 234
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
+G S+G S +D + ++ + ++A+E++ ++TLAEPTLTA
Sbjct: 235 SGGSNGISYGALSDPFTGLGKPLSNAGFS--INASGLQAYINAMEQSGVMKTLAEPTLTA 292
Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---------ATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+SG+ A+F GG++ T S+ SV +YG+ L F P VLSPGRI L
Sbjct: 293 VSGEKATFKVGGEYNMVTGVSANVSADNQTGLKTYSVDKIEYGIGLEFQPVVLSPGRISL 352
Query: 331 RIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+++T VSEP + + S R R ADTTVELPSGG++++AGL++DD++Q
Sbjct: 353 KVRTSVSEPTTEGSVSSSTSNTSVGMNALSLRKRLADTTVELPSGGSMMIAGLVRDDVRQ 412
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
G+P L+KIP+LGALFR+ F R ETE+ I TP+LVKPVA DL++PDD+++ D
Sbjct: 413 AVNGLPGLTKIPVLGALFRSRDFVRNETELVIIITPYLVKPVARNDLAKPDDNFNAASDG 472
Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
A F +VN++YG + + G+ Y G +G+IYK
Sbjct: 473 AAMFLGKVNRVYGTMQTDKPNGR-YHGVVGYIYK 505
>gi|90425197|ref|YP_533567.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB18]
gi|90107211|gb|ABD89248.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB18]
Length = 492
Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 160/495 (32%), Positives = 263/495 (53%), Gaps = 35/495 (7%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
R ++ + ++ L P A+ + + + +++G++K +++
Sbjct: 7 RPMRSPLARALWFSAAAALTINPALAPALAADYRPMAAAADGQLNARFLALGVSKSVVID 66
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
+P D++DVLV+DP A+ VV S + Y+ G +GQ N++ G Q+ DI + RD+
Sbjct: 67 LPRDIKDVLVADPKIANAVVRSAQRAYIIGAAIGQTNIVFFDAAGLQIAAYDIAVTRDLN 126
Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+ +++ + ++IRVE V +V+L G V + ++Q+A +L+ +
Sbjct: 127 GIRAAMKQTLPGADIRVEGVGVKSVMLTGSVSSPIEAQQAGDLAARLVDG---------- 176
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-----G 235
V+N + + G DQV LKVT+AEV+RDI+KQ+G + + +F G
Sbjct: 177 PDNVVNSIAVRGRDQVMLKVTVAEVQRDIVKQLGVDLTARMNYGTAVVNFNNSNPFTAYG 236
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
VS + G S L A+E A +RTLAEP LTAISG+SA+F +GG+
Sbjct: 237 SNLVSGNATTASFGGGTTPSVTATLRAMESAGVVRTLAEPNLTAISGESATFVAGGEFPV 296
Query: 296 KTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------- 339
S T V +G+ L+FTP V+S GRI LR+ TEVSE
Sbjct: 297 PAGYSCDPVTHVCTTQISFKKFGISLNFTPVVMSEGRISLRVMTEVSEISTDNSITLSQA 356
Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
N+ +PS + R+A+TT+E+PSGG++ +AGL+++ +Q G+P L+++P+LGAL
Sbjct: 357 VSTTTTNSITVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAMNGLPGLAQLPVLGAL 416
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
FR+ + TE+ + TP++V+ VA +DLSRPDD ++ D +A +N+IYG +
Sbjct: 417 FRSRDYVNRNTELLVLVTPYVVRAVAQKDLSRPDDGFAAASDPQADLIGNINRIYGVRGR 476
Query: 458 SEVEGQNYKGAIGFI 472
+E NY+G GFI
Sbjct: 477 TEPAK-NYRGTYGFI 490
>gi|328545279|ref|YP_004305388.1| Pilus assembly protein [polymorphum gilvum SL003B-26A1]
gi|326415021|gb|ADZ72084.1| Pilus assembly protein [Polymorphum gilvum SL003B-26A1]
Length = 470
Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats.
Identities = 168/479 (35%), Positives = 269/479 (56%), Gaps = 18/479 (3%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAA-VINISDVEIGKGKKISIGLNKVIILQV 62
R F T + L A + ++++ E + + +GL + +++ V
Sbjct: 2 SGRRFATGLLAALAVLVTVSAMPAARADDGFPKTVHVAAGERATARLLRVGLGRSVVVNV 61
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
DV DVLVS+P AD VV S +++ G GQAN++L G +G+++ + ++ +E D +
Sbjct: 62 AEDVADVLVSNPEIADAVVRSKNRVFVLGNKAGQANLVLFGRNGRELASFNLRVEPDTSD 121
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
L L+R + +S+I E ++ VVL G + D+Q A +L+ F + + +
Sbjct: 122 LSALLKRVLPNSDIHAESINGNVVLSGTAVSAADAQSAADLATRF-------GGSGAGAL 174
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFV 239
V+N++++AG+DQ+ LKVT+AEV R ++KQ+G S G+ G S + +
Sbjct: 175 PVLNMISVAGKDQIQLKVTVAEVDRSVVKQLGVNLSGSIGIGNYRGTFNSASDFPVNPGI 234
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ + + + + AL+R IRTLAEPTLTAISG++ASF +GG+ VS
Sbjct: 235 TSQATGGIGFLAGGTNVNAEIQALQRDGVIRTLAEPTLTAISGENASFLAGGEFPVP-VS 293
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRK 355
V +GV L FTP VLS GRI +R++TEVSE + + + +VR+
Sbjct: 294 QDNDTIGVEFKKFGVGLDFTPVVLSGGRISMRVKTEVSELTNDGAVTTGGIVISALKVRR 353
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
A++TVELPSGGT+V+AGLLK+ +Q GIP L ++P+LGALF++ F R++TE+ + T
Sbjct: 354 AESTVELPSGGTLVMAGLLKETYKQAVNGIPGLMQLPVLGALFKSRDFLRQQTELVVFVT 413
Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
P++V PVA L+RPD ++ DA+ F NR+NK++G A Y G +G+IY+
Sbjct: 414 PYVVTPVAANALTRPDQNFLPPSDAETVFLNRINKLFGVSGAKVP--GTYHGQVGYIYE 470
>gi|167624205|ref|YP_001674499.1| type II and III secretion system protein [Shewanella halifaxensis
HAW-EB4]
gi|167354227|gb|ABZ76840.1| type II and III secretion system protein [Shewanella halifaxensis
HAW-EB4]
Length = 478
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 115/425 (27%), Positives = 201/425 (47%), Gaps = 19/425 (4%)
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
I + K +L + + V V +P+ AD+ + +Y+ GK +G N+++ + +
Sbjct: 36 RIPIFKSRVLMLNGPIHRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKNEQLAR 95
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
+DI + D+ L+ L +F+ + V+ ++L G +Q AVEL++ +
Sbjct: 96 IMDIEVTHDLNGLKTRLHQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEA 155
Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
+ + + KV+N++ I G+ QV L+V +AEV+R++ +Q + I S S
Sbjct: 156 A----AGDRAPSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFLIFNQGSNLSGGV 211
Query: 231 AA-----DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
D G +G + + L ++ + LAEP +TA+SGQSA
Sbjct: 212 IGGGGGFDPGSIGGVDGKGLFAQYINGDLMMNFALDVAKQNGLAKVLAEPNVTAMSGQSA 271
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341
F SGG+ V G T++ DYGV + F PTVL G+I L + VSE
Sbjct: 272 EFLSGGEFPIP-VPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGF 330
Query: 342 -----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +PS R TTVEL G TI ++GL+ D +++ + +P L +P+LG
Sbjct: 331 SISGNTSTSLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQ 390
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
LF + F ++E+ I TP LV+ +D+S P D + + D + + +++ +
Sbjct: 391 LFTSKSFQSGQSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENTDD 450
Query: 457 ASEVE 461
S+
Sbjct: 451 TSDTP 455
>gi|163851903|ref|YP_001639946.1| type II and III secretion system protein [Methylobacterium
extorquens PA1]
gi|163663508|gb|ABY30875.1| type II and III secretion system protein [Methylobacterium
extorquens PA1]
Length = 502
Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats.
Identities = 152/480 (31%), Positives = 245/480 (51%), Gaps = 29/480 (6%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
A + V+ I E +++ + + +I+ +P D ++V V++P A+
Sbjct: 24 MLSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L +L++ + V
Sbjct: 84 AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDV 143
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ V D++VL G V + ++Q+A++++ F+ + A + V+N L I +DQV +
Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGP------SKSFAADFGGKFVSEGGDFSVKGVLD 252
+VT+ EV R +LKQ G S S+ P + + G + +
Sbjct: 202 RVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFPLTGSRSPDANALTASVQTG 261
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------------TVSS 300
FSF+ L A E+A R LAEPTLTAISG+SA FT+GG+ T S
Sbjct: 262 GFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVS 321
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYR 352
++T YGV L FTP V++ RI +RI T+V + + +P
Sbjct: 322 QGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTT 381
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I
Sbjct: 382 KRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMI 441
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
TP++ +P+ R + RPDD + D +A R+NKIYG + G Y+G +GFI
Sbjct: 442 MVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500
>gi|146342078|ref|YP_001207126.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278]
gi|146194884|emb|CAL78909.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. ORS278]
Length = 492
Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats.
Identities = 160/493 (32%), Positives = 263/493 (53%), Gaps = 35/493 (7%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
+ +++ + L P+K A V K +S+G+ K +++
Sbjct: 12 KMGTALMRALAMSAAIALVLNPALAPVKAAEDRDAPTVSVGSSKVHYLSLGIGKSVVVDF 71
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
P DV+DVLV+DP A+ VV S + Y+ G +GQ NV+ +G+Q+ DI I+RD+
Sbjct: 72 PQDVKDVLVADPKIANAVVRSAKRAYIIGAAIGQTNVVFFDGEGQQVAAYDIAIKRDLNG 131
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
+ L + I ++++ V D V+L G V + ++Q+A E++ + +
Sbjct: 132 VRQALSQSIPG--VKIDGVGDGVILTGSVSSPVEAQQAGEIAARLVGG----------AD 179
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GKF 238
KV+N + + G DQV LKV ++EVRR+I+KQ+G S + + +F GK
Sbjct: 180 KVVNSIVVRGRDQVMLKVNVSEVRREIVKQLGIDLSASMTYGTAVVNFNQTNPFTAYGKS 239
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
++ G S G + S + A+E A ++TLAEP LTAISG+SA+F +GG+
Sbjct: 240 LAAGNGLSAIGGGNLSSVSATMRAMETAGVVKTLAEPNLTAISGESATFIAGGEFPVPGG 299
Query: 299 SSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------------- 340
S TSV +G+ L+FTP VLS GRI LR+ TEVSE
Sbjct: 300 YSCDPKTGLCSTSVMFKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAITLSYATSA 359
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
++ +P+ R R+A+TT+E+PSGG++ +AGL+++ +Q G+P L+++P+LG LFR+
Sbjct: 360 NSASSVTIPAIRTRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGLNQLPVLGQLFRS 419
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
+ ETE+ + TP++V+ VA ++LSRPDD ++ D+++ R+N++YG +
Sbjct: 420 QDYVNNETELMVLVTPYVVRAVAQKELSRPDDGFAPATDSESALLGRMNRLYGVAAKVDA 479
Query: 461 EGQNYKGAIGFIY 473
G GFI
Sbjct: 480 VTGQPAG-FGFII 491
>gi|157961834|ref|YP_001501868.1| type II and III secretion system protein [Shewanella pealeana ATCC
700345]
gi|157846834|gb|ABV87333.1| type II and III secretion system protein [Shewanella pealeana ATCC
700345]
Length = 478
Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats.
Identities = 124/472 (26%), Positives = 210/472 (44%), Gaps = 33/472 (6%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
R + + L + + A P N + I + K +L +
Sbjct: 3 FLRHCSIVCLLALLQLSTAYAGGPTAGARNDVQL--------------IPIFKSRVLMLK 48
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
V V V +P+ AD+ + +Y+ GK +G NV++ + + +DI + D+ L
Sbjct: 49 GPVHRVSVGNPSIADIKLLPNDELYILGKQLGSTNVMIWDKNEQLARIMDIEVTHDLNGL 108
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ L +F+ + V+ ++L G +Q AVEL++ + + + K
Sbjct: 109 KTRLYQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAA----AGGQAPSK 164
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
V+N++ I G+ QV L+V +AEV+R++ +Q + I S S GG G
Sbjct: 165 VLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGSNLSGGLVGGGGGFDPGSIG 224
Query: 244 DFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
KG+ L ++ + LAEP +TA+SGQSA F SGG+ V
Sbjct: 225 GIDAKGLFAQYINGDLMMNFALDIAKQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIP-V 283
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---------GVNAGDMP 349
G T++ DYGV + F PTVL G+I L + VSE +P
Sbjct: 284 PGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGFAISGNTSTTLVVP 343
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
S R TTVEL G TI ++GL+ D +++ + +P L +P+LG LF + F ++E
Sbjct: 344 SLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQSGQSE 403
Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
+ I TP LV+ +D+S P D + + D + + +++ ++S+
Sbjct: 404 LVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENSDDSSDTP 455
>gi|241518288|ref|YP_002978916.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240862701|gb|ACS60365.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 512
Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats.
Identities = 203/462 (43%), Positives = 287/462 (62%), Gaps = 23/462 (4%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
VI++++ + + +SIGLNK +I+++P D D++VSDP +D +V + RT++LFGK
Sbjct: 54 AENVISVTETGVNVTRHVSIGLNKTLIVELPQDAHDIVVSDPGVSDAIVRATRTIFLFGK 113
Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
VGQ N+ ++ + + ++N+DI +ERDIA LE LRR I D+ I+VE++SD +VL G VR
Sbjct: 114 KVGQTNIFILDANKRPIVNIDIAVERDIAGLETDLRRLIPDAAIKVEIISDNIVLTGTVR 173
Query: 153 TIQDSQRAVELSETFLSQSGRNQ-----------------YANSSSKKVMNLLNIAGEDQ 195
+ QDS +A +L+ F+ + K++NLL IA +DQ
Sbjct: 174 SAQDSAQAADLASAFVKGGEATTRTQSASSGGSQGSVALVAEDRQESKIINLLRIAADDQ 233
Query: 196 VTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
V LK+TIAEV+R+ILKQ+GF + + GS+ + + D G G
Sbjct: 234 VMLKMTIAEVKREILKQLGFDNELKNAGGSTIAQLGTASTDATTATSGGGLSALFSGSFG 293
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+ T L+ALE+A +RTLAEPTLTA+SGQSASF +GG+ LY G T+ T + Y
Sbjct: 294 KHGLSTTLNALEQAKVVRTLAEPTLTAVSGQSASFQAGGEVLYSNT-DRDGNTTQTPYSY 352
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
G+ L F P VL+ GRI L+I TEVSEPV ++ P+Y R TTVELPSGG+I LAG
Sbjct: 353 GISLSFKPIVLTSGRISLQISTEVSEPVTSISGSS-PTYGKRSTSTTVELPSGGSIALAG 411
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
L++D+ + G P+L+KIP GALFR + F R ETE+ I ATP+LV+PVA +DL+RPDD
Sbjct: 412 LIRDNFNRTSNGTPVLNKIPGFGALFRQTSFERNETELVIIATPYLVRPVAAKDLNRPDD 471
Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
+ S DDA +R+NK+YG + E Q Y G +GFIYK
Sbjct: 472 NLSPADDASQGLLDRINKLYGNGKTLEPTAQ-YHGTVGFIYK 512
>gi|188581660|ref|YP_001925105.1| type II and III secretion system protein [Methylobacterium populi
BJ001]
gi|179345158|gb|ACB80570.1| type II and III secretion system protein [Methylobacterium populi
BJ001]
Length = 502
Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats.
Identities = 154/482 (31%), Positives = 245/482 (50%), Gaps = 29/482 (6%)
Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
S+ A P + V+ I E +K+ + + +I+ +P D ++V V++P
Sbjct: 22 VSTLSGPASAQPGLPGASPVLTIGPNETAVSRKVELSKGRSLIIDLPRDAKEVFVANPAV 81
Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
A+ VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L +L++ +
Sbjct: 82 ANAVVRSSRKLFLIGIDNGATSIFVMDAEGRQIAALDVTIARDINVLRQSLQQSLPSGRF 141
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
V+ V D++VL G V + ++Q+A++++ F+ + A + V+N L I +DQV
Sbjct: 142 DVKAVGDSLVLSGSVNSASEAQQALDIANAFVGIAAGGGVATRGT--VINNLTIRNKDQV 199
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------SEGGDFSVKGV 250
++VT+ EV R +LKQ G S ++ P F + +
Sbjct: 200 MIRVTVVEVARTVLKQFGISTSGNWAALNPLGGNVFTNNTGFPLTGSRSPDANAITASVQ 259
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------------TV 298
FSF L A E+A R LAEPTLTAISG+SA FT+GG+ T
Sbjct: 260 TGGFSFRATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCAAASTVSIGTS 319
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPS 350
S ++T YGV L FTP V++ RI +RI T+V + + +P
Sbjct: 320 ISQGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPG 379
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
R ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+
Sbjct: 380 TTRRSSETTVELASGATMMTAGLIQQKNRGAISGLPGLMNLPILGALFRSRDYQRDETEL 439
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
I TP++ +P+ R + +PDD Y D +A R+NKIYG + G Y+G +G
Sbjct: 440 MIMVTPYIAQPMEARQVQKPDDGYVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVG 498
Query: 471 FI 472
FI
Sbjct: 499 FI 500
>gi|319785608|ref|YP_004145084.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317171496|gb|ADV15034.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 506
Score = 335 bits (860), Expect = 8e-90, Method: Composition-based stats.
Identities = 181/503 (35%), Positives = 289/503 (57%), Gaps = 43/503 (8%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
+ + ++ + ++ + N +++ +GLNK +++ +P D D+LV
Sbjct: 7 LPAIVAAAFGLLLVGTNVQGSVVEAKNAQVTASTATQRVKLGLNKSVVIDLPSDAYDILV 66
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
++P AD V + R +YLFGK VG+ N+ + G +G+Q+++LD+ +ERD+A LE +RRF+
Sbjct: 67 ANPAVADAVTRTARRIYLFGKAVGETNIFVFGPNGEQIVSLDLAVERDVAGLEDYIRRFL 126
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY--------------- 176
S ++VE+++D VVL G V T D++RA +L+ F+S
Sbjct: 127 PTSAVKVELLNDNVVLTGTVDTPLDAKRAEQLANMFVSGGEATTGQYSQTAAGGSAQSGV 186
Query: 177 ------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
+ +++NL+ I G+DQVTLKVT+AEV R ++KQ+G +G S+G S
Sbjct: 187 DINNPDQERRTSQIVNLIQIIGDDQVTLKVTVAEVSRSVMKQLGVNMVGSGGSNGISYGA 246
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+D + + + + + ++A+E++ ++TLAEPTLTA+SG+ A+F G
Sbjct: 247 ISDNFTGLGKQLSNSGFQ--IGASGLQAYVNAMEQSGVMKTLAEPTLTAVSGEKATFKVG 304
Query: 291 GQHLYKTVSSSTGATS---------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
G++ T S+ + V +YG+ L F P VLSPGRI L+++T VSEP
Sbjct: 305 GEYNMVTGVSANVSQDNQTGLKTYSVEKIEYGIGLEFQPVVLSPGRISLKVRTSVSEPTT 364
Query: 342 GVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ + S R R ADTTVELPSGG++++AGL++DD++Q G+P L+KI
Sbjct: 365 EGSVSFSSGVTSPGMNALSLRKRLADTTVELPSGGSMMIAGLVRDDVRQAVNGLPGLTKI 424
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
P+LGALFR+ F R ETE+ I TP+LVKPVA DL++PDD+++ D F RVN++
Sbjct: 425 PVLGALFRSRDFVRNETELVIIITPYLVKPVARNDLAKPDDNFNAASDGAGMFLGRVNRV 484
Query: 452 YGPKEASEVEGQNYKGAIGFIYK 474
YG + + G+ Y G +GFIYK
Sbjct: 485 YGTMQTDKPNGR-YHGVVGFIYK 506
>gi|115525749|ref|YP_782660.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisA53]
gi|115519696|gb|ABJ07680.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisA53]
Length = 486
Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats.
Identities = 152/489 (31%), Positives = 261/489 (53%), Gaps = 33/489 (6%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
R ++ S P+ + A +++ +++G++K +++
Sbjct: 11 RRFAVRSLAWTAVAALSLQPAALPVI----AADYRPAVANEGQMNAHFLALGISKSVVID 66
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
+P D++DVLV+DP A V+ S + Y+ G +VGQ N++ G+Q+ DI + RD+
Sbjct: 67 LPRDIKDVLVADPKIATAVIRSAQRAYIIGASVGQTNIVFFDAAGQQIAAYDIAVTRDLN 126
Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+ L++ + +++IRVE V V+L G V + ++Q+A E++
Sbjct: 127 GIRAALKQTLPNTDIRVEGVGPKGVLLSGSVSSPVEAQQAGEVAARLAEG---------- 176
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
++ V+N + + G DQV LKVT+AEV+RDI+KQ+G S + + +F
Sbjct: 177 AENVVNSIAVRGRDQVMLKVTVAEVQRDIIKQMGIDLSASMTYGTAVVNFNNTNPFTAFG 236
Query: 241 ---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
G+ + L A+E A +RTLAEP LTAISG+SA+F +GG+ +
Sbjct: 237 RQLVTGNSLATSFGGGPTVTATLRAMESAGVVRTLAEPNLTAISGESATFIAGGEFPVPS 296
Query: 298 VSSST-----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------- 344
+ G T + +G+ L+FTP V++ GRI LR+ TEVSE +
Sbjct: 297 GYNYDPVTHVGTTQIAFKKFGISLNFTPVVMTEGRISLRVMTEVSELSNDNSITLTQSNG 356
Query: 345 -AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+PS + R+A+TT+E+PSGG++ +AGL+++ +Q G+P +++IP+LG+LFR+ +
Sbjct: 357 DGLTVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGMAQIPVLGSLFRSRDY 416
Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
+TE+ + TP++V+ VA +DLSRPDD ++ D + +N+IYG + +
Sbjct: 417 VNRQTELMVLVTPYVVRAVAQKDLSRPDDGFAAVSDPQGDLLGSINRIYGVPGKPGPD-R 475
Query: 464 NYKGAIGFI 472
NY+G GFI
Sbjct: 476 NYRGTYGFI 484
>gi|212635453|ref|YP_002311978.1| Flp pilus assembly protein [Shewanella piezotolerans WP3]
gi|212556937|gb|ACJ29391.1| Flp pilus assembly protein [Shewanella piezotolerans WP3]
Length = 479
Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats.
Identities = 116/413 (28%), Positives = 195/413 (47%), Gaps = 20/413 (4%)
Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
I + K +L + V V V +P+ AD+ + +Y+ GK +G N+++ D +
Sbjct: 37 IPIFKSRVLMLEGPVHRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKDEQLSKI 96
Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
+DI + D+ L+ L F+ + V+ ++L G +Q AVEL++ + +
Sbjct: 97 MDIEVTHDLNGLKTRLHEFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAA 156
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------G 225
++ +V+N++ I G+ QV L+V +AEV+R++ +Q + I
Sbjct: 157 ----AGGTAPSRVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGDHLAGGVI 212
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
GG +G + V L ++ + LAEP +TA+SGQSA
Sbjct: 213 GGGGGGFAPGGIGGVDGKGLFAQYVNGDLLMNFALDVAKQNGLAKVLAEPNVTAMSGQSA 272
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341
F SGG+ V G T+V DYGV + F PTVL G+I L + VSE
Sbjct: 273 EFLSGGEFPIP-VPGENGNTTVEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGF 331
Query: 342 -----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +PS R TTVEL G TI ++GL+ D +++ + +P L +P+LG
Sbjct: 332 TISGNTSTSLVVPSLTKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQ 391
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
LF + F ++E+ I TP LV+P D+S P D + + D + + +++
Sbjct: 392 LFTSKSFQNGQSELVILVTPRLVRPFNRNDISLPTDGFVLPSDVEFYLLGKLS 444
>gi|307943145|ref|ZP_07658490.1| type II and III secretion system protein [Roseibium sp. TrichSKD4]
gi|307773941|gb|EFO33157.1| type II and III secretion system protein [Roseibium sp. TrichSKD4]
Length = 482
Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats.
Identities = 157/471 (33%), Positives = 261/471 (55%), Gaps = 18/471 (3%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
I L S V + + A ++++ E + +S+G+ + +I+ V DVLV
Sbjct: 22 AGIALVLSLAGVPEPAAAQGAFEKRVHVASGERVSSRLLSVGVGRSVIIDTAEAVADVLV 81
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
S+P AD VV +P +++ G GQAN++L G+++ + ++ +E D + L +++++
Sbjct: 82 SNPGVADAVVRTPNRIFVLGNKAGQANLVLFSRTGRELASFNLRVEPDTSDLVRFIQKYV 141
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
SNI + ++ ++L G D+QRA +L+ + + ++N++ +
Sbjct: 142 PGSNIEAQSLNGNIILSGTAANAADAQRAADLAARYAGDGKKATD-------ILNMITVD 194
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSV 247
GEDQV LKVT+AEV R+++KQ+G Q + FA + G + +
Sbjct: 195 GEDQVHLKVTVAEVDREVIKQLGVQLNGEIKIGNFGFGFANDTSFNAGTSVAQQTTRLAG 254
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
+ V + + AL+R ++TLAEPTLTAISG++ASF +GG+ T V
Sbjct: 255 ELVSGGTTIGAEVKALQREGIVKTLAEPTLTAISGENASFLAGGEFPIPISQDGNEVT-V 313
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELP 363
+GV L FTP VLS GRI L+I TEVSE + + +P+ +VR+A++T+ELP
Sbjct: 314 EFKKFGVGLDFTPIVLSGGRISLKITTEVSELSSDGAVNIGTLTIPALKVRRAESTLELP 373
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
SGGT+V+AGLL++ +Q G+P L +P+LG+LF++ F R +TE+ + TP++V P+A
Sbjct: 374 SGGTLVMAGLLQESYRQSVNGVPGLMNLPVLGSLFKSRDFLRSQTELVVFVTPYIVNPIA 433
Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
+ RPD + + +D++ F NR+NKIY + Y G +GFIYK
Sbjct: 434 ASKVQRPDKNLAPANDSETLFLNRLNKIYRANGQNAQAP--YHGQVGFIYK 482
>gi|218516388|ref|ZP_03513228.1| pilus assembly secretion protein [Rhizobium etli 8C-3]
Length = 436
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 215/441 (48%), Positives = 288/441 (65%), Gaps = 25/441 (5%)
Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
+NK +++ +P D D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G++++NLD
Sbjct: 1 MNKAVVVDLPEDAHDILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLD 60
Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
I IERD++ LE LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL
Sbjct: 61 IEIERDVSGLEANLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEA 120
Query: 174 NQYANSSSK-----------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
++S +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF
Sbjct: 121 TTRTETASGTGGDSAVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFD 180
Query: 217 H---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
+ + +G + + +AD V G K + ++ T L+ALE+A +RTLA
Sbjct: 181 NLISNSSGMTVAQLGTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLA 240
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
EPTLTAISGQ+A+F SGGQ LY T + G +V +YG+ L F P VLS GRI L I+
Sbjct: 241 EPTLTAISGQAATFNSGGQQLYSTT-DNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIK 299
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
T VSEPV G Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+
Sbjct: 300 TNVSEPVAGSGNAT---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPL 356
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
LG LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG
Sbjct: 357 LGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYG 416
Query: 454 PKEASEVEGQNYKGAIGFIYK 474
+EA + Q + G+IGFIYK
Sbjct: 417 RREAPVADAQ-FHGSIGFIYK 436
>gi|13474660|ref|NP_106229.1| exporter protein, cpaC [Mesorhizobium loti MAFF303099]
gi|14025415|dbj|BAB52015.1| exporter protein; CpaC [Mesorhizobium loti MAFF303099]
Length = 471
Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats.
Identities = 181/473 (38%), Positives = 279/473 (58%), Gaps = 43/473 (9%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+++ +GLNK +++ +P D D+LV++PT AD V + R +YLFGK+VG+ N+ +
Sbjct: 2 TATTATQRVKLGLNKSVVIDLPSDAYDILVANPTVADAVTRTARRIYLFGKSVGETNIFV 61
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
G +G+Q+ +LD+ +ERD+A LE +RRF+ S+++VE+++D VVL G V T D++RAV
Sbjct: 62 FGPNGEQIASLDLAVERDVAGLEDYIRRFLPTSDVKVELLNDNVVLTGTVDTPLDAKRAV 121
Query: 162 ELSETFLSQSGRNQYA---------------------NSSSKKVMNLLNIAGEDQVTLKV 200
+L+ F+S K++NLL I G+DQVTLKV
Sbjct: 122 DLATIFVSGGEATTGQYSQTAAGGSAQGGVDINNPDQERRVSKIVNLLQIIGDDQVTLKV 181
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
T+AEV R ++KQ+G G S+G S +D + + + +
Sbjct: 182 TVAEVSRSVMKQLGVNMVGNGGSNGISYGALSDNFTGLGKQLSHSGFN--IGNSALMAYI 239
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------GATSVTTHD 311
+A+E++ ++TLAEPTLTA+SG+ A+F GG++ T S ++ +
Sbjct: 240 NAMEQSGVMKTLAEPTLTAVSGEKATFKVGGEYNLLTGVSQNVSSDNQTGLTTYTINKIE 299
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVE 361
YG+ L F P VLSPGRI L+++T VSEP + +M S R R ADTTVE
Sbjct: 300 YGIGLEFQPVVLSPGRISLKVRTSVSEPTTEGSVALSNGVTSPGANMLSLRKRLADTTVE 359
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
LPSGG++++AGL++DD++Q G+P L+KIP+LGALFR+ F R E+E+ I TP+L KP
Sbjct: 360 LPSGGSMMIAGLVRDDVRQAVNGLPGLTKIPVLGALFRSRDFVRNESELVIIITPYLAKP 419
Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
VA DL++PDD+++ D A F +VN++YG + + G+ Y G +G+IYK
Sbjct: 420 VARNDLAKPDDNFNPASDGAANFLGKVNRVYGTMQTDKPNGR-YHGVVGYIYK 471
>gi|218530654|ref|YP_002421470.1| type II and III secretion system protein [Methylobacterium
chloromethanicum CM4]
gi|218522957|gb|ACK83542.1| type II and III secretion system protein [Methylobacterium
chloromethanicum CM4]
Length = 499
Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats.
Identities = 148/477 (31%), Positives = 247/477 (51%), Gaps = 26/477 (5%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
A + V+ I E +++ + + +I+ +P D ++V V++P A+
Sbjct: 24 MLSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L +L+ + V
Sbjct: 84 AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQLSLPGGRFDV 143
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ V D++VL G V + ++Q+A++++ F+ + A + V+N L I +DQV +
Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGP--------SKSFAADFGGKFVSEGGDFSVKGV 250
+VT+ EV R +LKQ G + ++ P + + G + +G S
Sbjct: 202 RVTVVEVARTVLKQFGINVTGNWAALNPLSPTGNVLTNTTPFPLTGAYSPDGNALSASIR 261
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGAT 305
S + L A E+A R LAEPTLTAISG+SA FT+GG+ + V+ +
Sbjct: 262 SGGVSLQATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPSNCSAGVAGAACTV 321
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRK 355
++ YGV L FTP V++ RI +R+ T+V+E + +P+ R
Sbjct: 322 ALEFKPYGVSLAFTPIVMAENRISIRVATDVTELDRQNSYSFSFPGSNRVTPVPATTRRS 381
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I T
Sbjct: 382 SETTVELASGATMMTAGLIQQKSRASISGLPGLMNLPILGALFRSRDYQRDETELMIMVT 441
Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
P++ +P+ R + RPDD + D +A R+NKIYG + G Y+G +GFI
Sbjct: 442 PYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 497
>gi|328953626|ref|YP_004370960.1| type II and III secretion system protein [Desulfobacca acetoxidans
DSM 11109]
gi|328453950|gb|AEB09779.1| type II and III secretion system protein [Desulfobacca acetoxidans
DSM 11109]
Length = 503
Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats.
Identities = 138/493 (27%), Positives = 213/493 (43%), Gaps = 46/493 (9%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
+ ++ L + +V P + A A + + D ++ + I + + + +L+ + +
Sbjct: 21 LAAMVLILGSAAVYSPPSVLAAQALLERVKDEDLE--QVIRLRVGRSKVLRTSFTISRIS 78
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
V+DP AD+++ S R +Y+ G G N+ L G + + + +E D++ L+ L +
Sbjct: 79 VADPEVADIIMISEREVYINGNAPGVTNISLWGK--RSFSSAKVTVEADVSLLKEKLFKV 136
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ I VE DTVVL G V + A+ L+ F KV+NLL+I
Sbjct: 137 LPKEKIAVEAAEDTVVLSGEVSGPVAQETAISLATAFSGGKK---------DKVVNLLHI 187
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------------G 235
G QV + V +AE+ R + K++G + + + +
Sbjct: 188 GGVQQVMVAVRVAEINRSVGKEMGINFAYSNKAGNFGATLLNSLSILKNIDRNLDSVTAP 247
Query: 236 GKFVSEGG-----------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
G V+ G + G+ F + L++ R LAEP L SGQ
Sbjct: 248 GVLVNPGVTTSSQQFSSSVNAVFGGLYGSFFWTAFFDVLKKNGLGRILAEPNLVTTSGQE 307
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-- 342
ASF +GG+ V S G TS+ +GV L FTPTVL +I LRI EVSE
Sbjct: 308 ASFLAGGEFPIP-VPSGLGTTSIDYKKFGVGLVFTPTVLDNDKIALRINPEVSELDFSSQ 366
Query: 343 ----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
VN +P +VR+ T VE+ G T+ +AGLL D + + PLL +PILG LF
Sbjct: 367 TTVVVNNFIVPGLKVRRTTTQVEMKDGQTLAIAGLLSDQHRNVVNKYPLLGDLPILGVLF 426
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
R+S F + ETE+ I TP LVK P D Y D + + R +
Sbjct: 427 RSSSFQKSETELVILVTPHLVKSQPPGPHRLPTDKYIEPTDLEFYLLGRSEGRDKKPQPP 486
Query: 459 EVEGQNYKGAIGF 471
GF
Sbjct: 487 AASPAREITPPGF 499
>gi|209886530|ref|YP_002290387.1| type II and III secretion system protein [Oligotropha
carboxidovorans OM5]
gi|209874726|gb|ACI94522.1| type II and III secretion system protein [Oligotropha
carboxidovorans OM5]
Length = 486
Score = 332 bits (852), Expect = 6e-89, Method: Composition-based stats.
Identities = 162/482 (33%), Positives = 267/482 (55%), Gaps = 28/482 (5%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
+S+F+ S PS A ++A+ + + + + +G++K +++ +P DV+D
Sbjct: 13 AAAISVFILGSAPSSALATDYSASSASTSHADSLN---ARALRLGISKSLVVDLPRDVKD 69
Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
VLV+DP A+ VV S R Y+ G +VGQ N+I DG+QM D+ + RD+ + +
Sbjct: 70 VLVADPKIANAVVRSSRRAYIIGASVGQTNIIFFDADGQQMAAYDVAVTRDLNGIRTAIH 129
Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
+ + S+I+VE + D VVL G ++Q+A EL+ + + + + ++N +
Sbjct: 130 QALPQSDIQVEGLGDGVVLSGTAANQAEAQQAYELAARLIGGP------SKAGELIVNNI 183
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAADFGGKFVSEGG 243
+ G DQV L+VT+AEV+R I+KQ+G S + + + + G + V
Sbjct: 184 AVRGRDQVMLRVTVAEVQRSIIKQLGVDLSGSFNYGTAVVDFNNTNTFTALGRRLVDNNA 243
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ G S + L A+E A IRTLAEP LTAISG+SA+F +GG+ T +
Sbjct: 244 VSAAFGNGTVPSVKATLRAMESAGVIRTLAEPNLTAISGESATFIAGGEFPIPTGITCQT 303
Query: 304 ---------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPS 350
S+ +G+ L+FTP VL+ GRI LR+ TEVS + I V+ +PS
Sbjct: 304 AAGGSTGPCQPSIAFKKFGISLNFTPVVLTEGRISLRVMTEVSEVSSDNSISVSGLTIPS 363
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ R+A+TT+E+PSGG++ +AGL++D +Q G+P L+++P+LG LFR+ F +TE+
Sbjct: 364 IKTRRAETTLEIPSGGSMAMAGLIQDQTKQAINGLPGLAQVPVLGTLFRSRDFINNQTEL 423
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
+ TP++V+ VA +DLSRPDD ++ D ++ + +IYG +Y+G G
Sbjct: 424 MVLVTPYVVRAVAQKDLSRPDDGFASASDPQSVLLGNITRIYGVPRRGGP-VASYRGKYG 482
Query: 471 FI 472
FI
Sbjct: 483 FI 484
>gi|46580524|ref|YP_011332.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602159|ref|YP_966559.1| type II and III secretion system protein [Desulfovibrio vulgaris
DP4]
gi|46449943|gb|AAS96592.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562388|gb|ABM28132.1| type II and III secretion system protein [Desulfovibrio vulgaris
DP4]
gi|311234263|gb|ADP87117.1| type II and III secretion system protein [Desulfovibrio vulgaris
RCH1]
Length = 484
Score = 332 bits (850), Expect = 9e-89, Method: Composition-based stats.
Identities = 125/457 (27%), Positives = 204/457 (44%), Gaps = 41/457 (8%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
++ + K ++ V + ++D A VVV SP+ +Y+ GK G + L
Sbjct: 38 AASSELQVATGKSSVVSTSRPVGRLAIADEAIAGVVVLSPQQVYVTGKKAGTTTLTLWDG 97
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
G + D+ + DIA L+ L R + N I V V+DTV L G VR+ A+++
Sbjct: 98 GGAVIGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVNDTVTLAGTVRSAASMTTAMDM 157
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ + + KV NL+ + G QV L+V +AE+RR++++++G +
Sbjct: 158 ARLY------------APDKVTNLMQVGGVHQVMLEVKVAEMRRNVMERLGIDLTYAWRG 205
Query: 224 SGPSKSFA-------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
A G +S + + + + S L L++ ++
Sbjct: 206 DFIFGMLNQLFTLDSQKGVVDAGPSGAVLSPNVNGAFRITSGQVSIMGFLDVLKQNGLVK 265
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
LAEPTL SG+ A F +GG+ V G ++ ++GV L F PTV+ GRI +
Sbjct: 266 VLAEPTLVCRSGEKAEFLAGGEIPIP-VPQGLGTVAIEYKEFGVTLQFLPTVVGDGRISM 324
Query: 331 RIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
++ EVSE V+ + +P+ R+A TTVEL G + +AGLL+DD++Q P
Sbjct: 325 KVAPEVSELDYTNVVQIQGFTIPAITSRRASTTVELADGQSFAIAGLLRDDVRQAVNKYP 384
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+L +P+LG LFR+S + + ETE+ I TP L KP+ P D Y + F
Sbjct: 385 VLGDMPVLGTLFRSSNWQKNETELVIIVTPHLAKPLEANATRLPTDAYREPSAFEYFILG 444
Query: 447 RVNKI----------YGPKEASEVEGQNYKGAIGFIY 473
R+ +GA G +
Sbjct: 445 RMEGSRRADATAAAARTYGTTGAGAPSGMEGAFGHML 481
>gi|90411206|ref|ZP_01219219.1| Flp pilus assembly protein [Photobacterium profundum 3TCK]
gi|90328052|gb|EAS44373.1| Flp pilus assembly protein [Photobacterium profundum 3TCK]
Length = 489
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 121/447 (27%), Positives = 208/447 (46%), Gaps = 41/447 (9%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
++V + + IS+ NK ++++P + + V +P AD+++ +Y+ GK G N
Sbjct: 27 TTNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTN 86
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
VI+ + + LD+ + D+ L+ L F+ + I V + +VL G V +
Sbjct: 87 VIIWDSKDRLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIA 146
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
AVE++ TF ++ +++NL+ + G QV L+VT+AEV+R ++++ +
Sbjct: 147 TAVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKFV 195
Query: 219 ITGSSSGPSKSFAADFGGKFVSEG------------------GDFSVKGVLDRFSFETVL 260
S + A + G + F
Sbjct: 196 FARQSGNWTWGGANGGASVPSNVGILDPILDAAVSNPLNIDDNGLFASFLSSNTLFAAAF 255
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+ + LAEPTLTAISG+ A F SGG+ + ++ ++GV L F P
Sbjct: 256 DIAKTNGLAKVLAEPTLTAISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFLP 313
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGD----------MPSYRVRKADTTVELPSGGTIVL 370
TV+S I L + EVSE +PS R A TT+EL +G TI +
Sbjct: 314 TVMSADSINLALNIEVSEISNQNAVSITPGGTNSQFFVPSLSKRGAKTTIELGNGQTIGI 373
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGLL ++I + + +P L +PI+G LFR+ F + ETE+ I TP L KPV +D++ P
Sbjct: 374 AGLLNENITDVVDKLPGLGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLP 433
Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEA 457
D++ +D + + R++++ + A
Sbjct: 434 TDNFVEPNDWEYYLLGRMSELKRNEPA 460
>gi|78357403|ref|YP_388852.1| type II/III secretion system protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78219808|gb|ABB39157.1| type II/III secretion system protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 482
Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats.
Identities = 128/499 (25%), Positives = 220/499 (44%), Gaps = 63/499 (12%)
Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
R F + ++ L + A +P + + K ++L+
Sbjct: 15 RHFPVLAAVLLSAVCAQAAIVPAA--------------------VQLAAGKSVVLETASP 54
Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
V+ V V+ P A V+V SP +Y+ G G + L G DI + DIA L+
Sbjct: 55 VRRVSVAAPEVAQVLVLSPTQVYVTGVKPGGTTLTLWNAAGAVSHVFDIQVSPDIARLKE 114
Query: 126 TLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
L + + +I V V +++ L G V + A++++ + + KV
Sbjct: 115 MLHKLLPSEKDIMVMTVGESITLAGTVSSPAHIATAMDMARMY------------APDKV 162
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------SGPSKSFA 231
NL+ + G Q+ L+V +AE+RR +++++G + + +
Sbjct: 163 TNLMKVGGMHQIMLEVKVAEMRRSVMQRLGIDLAAAWGNSFAFTMLNQLFTLDNQDGTIG 222
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
+S + + + L L+ ++ LAEPTL SG+ ASF +GG
Sbjct: 223 VGRTAAVLSPNNTGVFQAPVGGMTLTGFLDVLKENGLVKVLAEPTLVCRSGEHASFLAGG 282
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD 347
+ V G ++ +YGV L FTPTVLSP +I L+++ EVSE VI +N
Sbjct: 283 EIPIP-VPQGLGTVAIEFKEYGVTLDFTPTVLSPRQISLKVEPEVSELDYANVIQINGFS 341
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P R+A TTVEL G + +AGLL+D++++ + P L IP+LG LFR+S + + E
Sbjct: 342 IPGISSRRASTTVELGDGQSFAIAGLLRDEVRETIKKYPGLGDIPVLGTLFRSSSWQKNE 401
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN-----------KIYGPKE 456
TE+ I TP L KP+ M + P D + + + F ++ + G +
Sbjct: 402 TELVIIITPRLAKPLDMTAQTLPTDGFREPTEYEFFIQGKMEGDAPAAAPAAMRGSGDVQ 461
Query: 457 ASEVEGQ-NYKGAIGFIYK 474
+S+ +G G + +
Sbjct: 462 SSDGNPPSGMEGEFGHVLR 480
>gi|114705456|ref|ZP_01438364.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506]
gi|114540241|gb|EAU43361.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506]
Length = 544
Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats.
Identities = 185/523 (35%), Positives = 275/523 (52%), Gaps = 65/523 (12%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L + + + A N+ + G + I +GL+K +L + D D+LV++P
Sbjct: 24 ALGLTAAIALAPLALTQTAYAEQNVVQIGAGHTR-IELGLDKSKVLVLSADAHDILVANP 82
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
+ AD + R +YLFGK VGQ N+I+ +Q+ ++DI IERDIA L + +++ DS
Sbjct: 83 SIADALTRDRRHIYLFGKQVGQTNLIVFDQANRQIASIDIQIERDIAGLSQAIAKYVPDS 142
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY------------------ 176
+++VE+++D VVL G VRT DS+R +++ +L+
Sbjct: 143 DVKVEIMNDNVVLTGRVRTPLDSKRVSQIASAYLTGGEATTGQYIRSASAGGESEGSNGD 202
Query: 177 -----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+++NLL I GEDQVTLKVT+AEV+R I+KQ+G + + G +
Sbjct: 203 VAFASETRRESQIINLLQIEGEDQVTLKVTVAEVQRSIIKQLGLNGATSSVIDGMTFGSL 262
Query: 232 AD--FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
D FG + +F + G + L A+++A +RTLAEP LTAISG+SASF
Sbjct: 263 IDNPFGLGKAASNSNFGLAGTIGDTGIRAQLSAMDQAGVMRTLAEPNLTAISGESASFKV 322
Query: 290 GGQHLYKTVSSSTG-----------------------------ATSVTTHDYGVVLHFTP 320
GG+ L T S T +YG+ L FTP
Sbjct: 323 GGEFLLPTGQSYDYGEEAKREFKGFDGDGRAIYEEVPATRDVRTVETKTIEYGIGLDFTP 382
Query: 321 TVLSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLA 371
VLSPGRI L+++T VSEP R R ADTTVELPSGG++V+A
Sbjct: 383 VVLSPGRISLKVRTSVSEPTFETPFGSSGGFDGGVTGIGIRKRLADTTVELPSGGSLVIA 442
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL++D+++Q+ G P LSK+P+LG+LFR+ F R ETE+ + TP+LV+PVA L+RPD
Sbjct: 443 GLVRDEVRQVVSGFPGLSKLPVLGSLFRSRDFQRYETELVVIVTPYLVRPVAREALARPD 502
Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
D + D + F ++N++YG E G+ Y G +G+IYK
Sbjct: 503 DGLAFASDGASNFLGKINRVYGHSETKLPPGR-YHGVVGYIYK 544
>gi|148256957|ref|YP_001241542.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
gi|146409130|gb|ABQ37636.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
Length = 489
Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats.
Identities = 160/492 (32%), Positives = 266/492 (54%), Gaps = 38/492 (7%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
+L R F T +I L + NP++A + ++ + V+++ ++ +S+G+ K +++
Sbjct: 14 WLVRAFSTAAAIGL-AINPALAPVHAAEDRDTPVVSVGSSKV---HYLSLGIGKSVVVDF 69
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
P DV+DVLV+DP A+ VV S R Y+ G VGQ NV+ +G+Q+ DI I+RD+
Sbjct: 70 PQDVKDVLVADPKIANAVVRSARRAYIIGAAVGQTNVVFFDGEGQQVAAYDIAIKRDLNG 129
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
+ L + I ++++ V D V+L G V + ++Q+A E++ + S
Sbjct: 130 VRQALSQSIPG--VKIDGVGDGVILTGSVSSPVEAQQAGEIASRLVGG----------SD 177
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240
KV+N + + G DQV LKV ++EVRR+I+KQ+G S + + +F
Sbjct: 178 KVVNSIVVRGRDQVMLKVNVSEVRREIVKQLGIDLSASMTYGTAVVNFNNTNPFTAYGKS 237
Query: 241 -EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
G+ S + A+E A +TLAEP LTAISG+SA+F +GG+
Sbjct: 238 LVNGNALNVSGGGLSSVSATMRAMETAGVTKTLAEPNLTAISGESATFIAGGEFPVPGGY 297
Query: 300 SSTGATSV-----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---------- 344
+ T V T +G+ L+FTP VLS GRI LR+ TEVSE
Sbjct: 298 NCDPTTRVCTTSITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAITVSYALTST 357
Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ +P+ R R+A+TT+E+PSGG++ +AGL+++ +Q G+P + ++P+LG LFR+
Sbjct: 358 SSSSVTIPAIRTRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGVDQLPVLGQLFRSK 417
Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
+ ETE+ + TP++V+ VA ++L+RPDD ++ D+++ R+N++YG +
Sbjct: 418 DYVNNETELMVLVTPYVVRAVAQKELARPDDGFAPATDSESALLGRMNRLYGIAAKVDTA 477
Query: 462 GQNYKGAIGFIY 473
G GFI
Sbjct: 478 TGEPAG-FGFII 488
>gi|163751744|ref|ZP_02158962.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica
KT99]
gi|161328396|gb|EDP99555.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica
KT99]
Length = 484
Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats.
Identities = 118/436 (27%), Positives = 197/436 (45%), Gaps = 21/436 (4%)
Query: 42 VEIGKGKKI-SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
G + I I + K I+ + V V V +P D+ + +Y+ GK +G N++
Sbjct: 31 GPTGASRDIMQIPIFKSRIINLKHAVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIM 90
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+ + + + +DI I D+ L++ L F+ + V+ +++ G ++ A
Sbjct: 91 IWDENERLVDVIDIEITHDLNGLKLRLHEFLPGEKLGVQTSQGHLLISGQASNLKKMNTA 150
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
VEL + V+N++ + G+ QV L+V IAEV+R++ +Q + I
Sbjct: 151 VEL----AKAYAAAASVSKVKSTVLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIF 206
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEP 275
S S A G + +G D L ++ + LAEP
Sbjct: 207 NKGSKMSGGVAGRGGSFDLDPAAAIDSRGFFARYLNDNLMMNFALDVAKQNGLAKILAEP 266
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
T+TA+SGQSA F SGG+ V G+T++ D+GV + F PTVL G+I L +
Sbjct: 267 TVTALSGQSAEFLSGGEFPIP-VPGINGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVI 325
Query: 336 VSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
VSE +PS R TTVEL G TI ++GL+ D +++ + +
Sbjct: 326 VSEISNVHSVSLSGGGSNATLIVPSIVKRTTSTTVELADGQTIAISGLISDTLRENIDKL 385
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
P L IPILG LF + F ++E+ I TP LV+P + +S P D + + D + +
Sbjct: 386 PGLGDIPILGQLFTSKSFKSGQSELVILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLL 445
Query: 446 NRVNKIYGPKEASEVE 461
+++ + S
Sbjct: 446 GKMSHKKQNSQRSGTP 461
>gi|253996769|ref|YP_003048833.1| type II and III secretion system protein [Methylotenera mobilis
JLW8]
gi|253983448|gb|ACT48306.1| type II and III secretion system protein [Methylotenera mobilis
JLW8]
Length = 513
Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats.
Identities = 135/480 (28%), Positives = 226/480 (47%), Gaps = 32/480 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK---------ISIGLNKVI 58
M+ + L S P A P N V ++ ++ + + L +
Sbjct: 24 LAAMLGVTLLSIAPLHAAEPQANMQNILVAAVTPKKVAARPTPSSTEIVPSVELSLGQSH 83
Query: 59 ILQVPVDV--QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ----MLNL 112
++++P V Q V V D V V SPR + L K +G VI++ G+ + +
Sbjct: 84 LVRLPAGVNLQRVKVDDDKIVQVDVTSPREVVLHAKTIGSTMVIILDKSGQSAVMDVRVV 143
Query: 113 DILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
D A L+ L++ + + I+V ++++VL G V + +A+ L+E +
Sbjct: 144 AAATAMDAASLQTKLQQIMPNEKGIKVSTAAESLVLSGTVSDAVKADKAMALAEAY---- 199
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
KKV+N+L +A QV L+V +AEV +++L ++G + S+ G + + A
Sbjct: 200 ----GGKDKDKKVINMLQVAAPQQVMLEVKMAEVSKNLLDKLGASFGASRSNGGVAYAIA 255
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
+ F ++ + + + + A + ++ LAEP + AISGQ SF +GG
Sbjct: 256 SGFLSLTGADPLSPGGLLTITKGNTAIKVDAENKDGVVKILAEPNIIAISGQEGSFLAGG 315
Query: 292 QHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
+ S+TG ++ D+GV L FTPTVL G I LR+ EVSE G
Sbjct: 316 KIFIPVPQSNTGGGSNVLTLEERDFGVGLKFTPTVLEEGMINLRVAPEVSELNQGGTTVG 375
Query: 348 M---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
PS+ VR+ TTV+L G + +AGL+K+++ + P+L +IPILGALFR+S F
Sbjct: 376 GSVFPSFTVRRVATTVQLRDGQSFAIAGLIKNNVTENVRRFPILGEIPILGALFRSSSFQ 435
Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
++TE+ TP LVKP+ D + P D ++ A+ F ++ E Q+
Sbjct: 436 EDKTELLFVITPRLVKPL-PPDFALPTDKFTPPSKAEFFLNGKLEGKPAEPATEESPAQS 494
>gi|116748930|ref|YP_845617.1| type II and III secretion system protein [Syntrophobacter
fumaroxidans MPOB]
gi|116697994|gb|ABK17182.1| type II and III secretion system protein [Syntrophobacter
fumaroxidans MPOB]
Length = 482
Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats.
Identities = 130/487 (26%), Positives = 207/487 (42%), Gaps = 45/487 (9%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
+++ L + S AA +KI + + K +I++ V
Sbjct: 16 VLAFSLVLISSSALH--------AAGPVKVVTGEHAARKIHLQVGKSVIVRSGAPVVRTT 67
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
+ P AD+V SP +Y+ GK G N+ L D K DI + D L+ L
Sbjct: 68 LGSPDVADIVALSPTQIYITGKATGVTNLTLWQSDDKVSAIYDIEVAPDTMRLKEKLHEV 127
Query: 131 IADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
+ +I+V D++ L G + + +A+ L+E + KKV+NLL
Sbjct: 128 LPGERDIKVSASHDSLTLSGTISSSTHLAQAMTLAEAYSGG-----------KKVINLLQ 176
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK------------ 237
++G QV L+V +AE+ R + ++G SI + S +
Sbjct: 177 VSGVHQVMLEVRVAEMSRTLTNRLGIN-SIWNVNGSMGASLLGNLASLDKFAGSASGSSS 235
Query: 238 --FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ + + F++ + AL+ ++ LAEPTL A+SGQSASF +GG+
Sbjct: 236 EFTFAPTVNSLFHILGGPFTWTAFIDALKEDGLVKVLAEPTLIAMSGQSASFLAGGEFPI 295
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSY 351
V G + +GV L FTPTVL+ R+ + + EVSE +P
Sbjct: 296 P-VPQGLGTVGIEYKQFGVSLAFTPTVLNDKRMNIIVAPEVSELDYTTAINIAGVAVPGL 354
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
RK T +EL G + +AGLLKD I++ + P+L IP+LGALFR+ F R ETE+
Sbjct: 355 TTRKVSTAIELNDGQSFAIAGLLKDTIREDAKKFPILGSIPVLGALFRSVSFQRNETELI 414
Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV-----EGQNYK 466
+ TP L KP+ + P D + D++ FF + + +
Sbjct: 415 VIVTPRLAKPIDVATQPLPTDKFIEPSDSEFFFLGLLQGRAPKPAPRAPLPITDKKAGFD 474
Query: 467 GAIGFIY 473
G G
Sbjct: 475 GEFGHTV 481
>gi|84387245|ref|ZP_00990266.1| Flp pilus assembly protein [Vibrio splendidus 12B01]
gi|84377892|gb|EAP94754.1| Flp pilus assembly protein [Vibrio splendidus 12B01]
Length = 484
Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats.
Identities = 118/454 (25%), Positives = 205/454 (45%), Gaps = 27/454 (5%)
Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
S + GK +++ +K + + V + DP D+V+ ++L GK +G
Sbjct: 16 TASVAALQTGKTVTVPHHKSTHVVLSGKAAKVSLGDPEVLDIVILKSNELFLIGKKLGAT 75
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
N++ G+ + +++I + D+ L+ L F+ D I V + ++L G V Q
Sbjct: 76 NLMAWDSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQM 135
Query: 158 QRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
A+ ++ET+ S ++ S S++ V+NL++I G QV L+VT+AEV+R ++++
Sbjct: 136 NVAMRIAETYSSGQTADKSNESGSEQADATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195
Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHA 262
+S A+ + F++ D F L
Sbjct: 196 FDANFHFFQTSGSDFSWGASSVPAGVLGATPIFNIPTSTDYGILGSFIDSNTLFTFALDV 255
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
++ + LAEP LTA+SG A F +GG+ ++ +YGV L F PTV
Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTV 313
Query: 323 LSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAG 372
LS +I L + +VSE + +P R A +T+EL G TI +AG
Sbjct: 314 LSDKKINLNLAVDVSEIANTSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAG 373
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
LL ++++ + +P +PILG LF + + ETE+ I TP L KP+ ++ P D
Sbjct: 374 LLSENVRDISNKMPGFGDVPILGQLFNSQEYISGETELVILVTPRLAKPIDRSKVTLPTD 433
Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+ +D + + R I P E+ + Q +
Sbjct: 434 AFVDPNDLEYYLLGRGAYIAEPSESDSEQSQASQ 467
>gi|254473733|ref|ZP_05087128.1| type II and III secretion system protein [Pseudovibrio sp. JE062]
gi|211957119|gb|EEA92324.1| type II and III secretion system protein [Pseudovibrio sp. JE062]
Length = 456
Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats.
Identities = 161/471 (34%), Positives = 264/471 (56%), Gaps = 23/471 (4%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
M++ L + P +A EA V + V++ +++++G + I+L +V+DVLV
Sbjct: 1 MALTLTVTAPQLATAQTNFEATVEVTSQHSVKV---RQLNVGEGRSIVLNTNEEVRDVLV 57
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
S+P AD VV + +++FG GQA+++L G+ GKQ+ + ++ ++ D + L ++R +
Sbjct: 58 SNPKIADAVVRTRNRVFVFGNETGQASLVLFGNGGKQLASFNLNVQPDPSGLIELIQRLL 117
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
+S I ++V+++VVL G + ++Q+A +++ F+ KK++N + +A
Sbjct: 118 PNSAINADIVNESVVLSGTAISALEAQQAYDIALKFVGND---------DKKIVNTIAVA 168
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFVSEGGDFSVK 248
+DQV LKVT+AEV R +KQ+G S F V G F +
Sbjct: 169 EKDQVQLKVTVAEVERTTIKQLGVSLQGALSIGALDVKFNTSPAYNINPSVVNAGLFQGQ 228
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
+ S + ALER ++TLAEPTL A+SG++ASF +GG+ S+
Sbjct: 229 LPIGGGSIVPTIKALERDGVMKTLAEPTLVAVSGENASFLAGGEFPIPVAYEDN-KISLE 287
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-----RKADTTVELP 363
+GV L FTP VLS GRI LRI+TEVSE + V R+A++T+ELP
Sbjct: 288 FKPFGVGLDFTPVVLSEGRIKLRIKTEVSELSSEGAVNLAGAISVSALKVRRAESTLELP 347
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
SGGT+V+AGLLK + Q +GIP L +PILG +F++ + ++TE+ I TP++V+PVA
Sbjct: 348 SGGTLVMAGLLKHNYGQEIDGIPGLKDVPILGTMFKSRDYINKQTELVIFVTPYVVRPVA 407
Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
++RPDD+++ D F N++++IY +A +Y G IG+IY+
Sbjct: 408 RSQIARPDDNFAAPSDQSTIFLNQLSRIYRSTDAPV--KGSYHGKIGYIYE 456
>gi|27375777|ref|NP_767306.1| hypothetical protein bll0666 [Bradyrhizobium japonicum USDA 110]
gi|27348915|dbj|BAC45931.1| bll0666 [Bradyrhizobium japonicum USDA 110]
Length = 505
Score = 326 bits (836), Expect = 5e-87, Method: Composition-based stats.
Identities = 161/503 (32%), Positives = 262/503 (52%), Gaps = 45/503 (8%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVI---------NISDVEIGKGKKISIG 53
RTF+ + L ++ + K + +S+G
Sbjct: 15 NRARTFWAGAMLTLGLLAAPGLVSAAEAPVGDQAPLQAPDLGVASVGTIAPAKTRFLSLG 74
Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
+ K +++ +P +V+DVLV+DP A+ V+ S + Y+ G VGQ NV+ DG+Q+ D
Sbjct: 75 VGKSVVIDLPREVKDVLVADPKIANAVIRSAQRAYIIGGQVGQTNVVFFTADGQQVAAYD 134
Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
I ++RD+ + LR+ + +++E + D+V+L G V + ++Q+A E++ +
Sbjct: 135 IAVKRDLNGMRAALRQSLPG--VQIEGIGDSVMLTGSVSSPVEAQQAGEVAAKLVGG--- 189
Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
S+KV+N + + G DQV LKV + EVRRDI+KQ+G S + ++ +F
Sbjct: 190 -------SEKVVNNIVVRGRDQVMLKVVVGEVRRDIVKQLGVDLSASLNAGTAVVNFNNS 242
Query: 234 -----FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
GG VS G + + A+E A +RTLAEP+LTAISG+SA+F
Sbjct: 243 NPFSVSGGPLVSSNGLGVTGLAKGVATVNATMRAMETAGVMRTLAEPSLTAISGESATFI 302
Query: 289 SGGQHLYKTVSSSTGATSV-----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342
+GG+ + T V T +G+ L+FTP VLS GRI LR+ TEVSE
Sbjct: 303 AGGEFPIPGGYACDPVTHVCTTQITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNQN 362
Query: 343 ------------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++ +PS + R+A+TT+E+PSGG++ +AGL++ +Q G+P + +
Sbjct: 363 AISVTQAVSASQTSSVTIPSIQTRRAETTLEIPSGGSMAMAGLIQQQTKQAINGLPGVDQ 422
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
+PI+GALFR+ F ETE+ + TP++V+ VA ++LSRPDD ++ DA+ R+N+
Sbjct: 423 VPIIGALFRSQDFVNNETELMVIVTPYVVRAVAQKELSRPDDGFAPASDAQTALLGRMNR 482
Query: 451 IYGPKEASEVEGQNYKGAIGFIY 473
+YG +G GFI
Sbjct: 483 LYGI-ARRVDPIDGARGDFGFII 504
>gi|114568970|ref|YP_755650.1| type II and III secretion system protein [Maricaulis maris MCS10]
gi|114339432|gb|ABI64712.1| type II and III secretion system protein [Maricaulis maris MCS10]
Length = 491
Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats.
Identities = 147/502 (29%), Positives = 257/502 (51%), Gaps = 39/502 (7%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVII 59
MR ++ L + P A+ + N + I + G + + + L+K +
Sbjct: 1 MRTEMMIRTLLLLASLAMAAPVAAQPAGTERGNTMQVYIREPGNGPVSETLDLPLSKAAV 60
Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
+ +PVDV DVLV++P + +V +PR Y+ G +GQ N +G+ +L+LD+ +ERD
Sbjct: 61 VHLPVDVADVLVTNPAVVEAIVRTPRRAYIMGMGIGQTNAFFFDANGQLILDLDLRVERD 120
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
++ L+ ++ RF+ ++ I VE ++D +VL G + D+ A+ +++ ++
Sbjct: 121 LSPLQESIDRFLPNARIEVEAMNDHIVLSGRAPSASDADAALRIAQRWVDN--------- 171
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---- 235
+++++++ +QV L+V I E++R I++Q+G S G++ +
Sbjct: 172 -PDNILSMISVEAREQVMLRVRIVEMQRTIVRQLGVNLSTAGTTGEFGFGVSTSPDFSRV 230
Query: 236 ---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
S D+ S +L A+ER +RTLAEP LTAI+G+SA+F +GG+
Sbjct: 231 GRFLGGTSAMLDWVSGNTGGVESVSAMLQAMERVGLVRTLAEPNLTAITGESANFLAGGE 290
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------- 344
G + +GV L FTP VLS GRI LRI TEVSE +
Sbjct: 291 FPVPVGRDRDGNIIIEYKPFGVGLGFTPVVLSEGRISLRISTEVSELTSQGSLTFQSNNV 350
Query: 345 ------------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+P+ V +A+TTVELPSGG++VLAGL++++ +Q +G+P + +P
Sbjct: 351 LDDDGNVIGTVPGLTIPALNVNRAETTVELPSGGSLVLAGLIQEETRQNLDGVPGVQNLP 410
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
+LG+LFR+ + +ETE+ + TP+LV P L P D + +A F R+N+ Y
Sbjct: 411 VLGSLFRSRDYENQETELVVLVTPYLVDPTNPNQLQTPADGFRNASEASGLLFGRINRAY 470
Query: 453 GPKEASEVEGQNYKGAIGFIYK 474
+ + + + G +GF+++
Sbjct: 471 SVPGSDTGD-RGWSGPVGFLFE 491
>gi|323499921|ref|ZP_08104880.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326]
gi|323315162|gb|EGA68214.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326]
Length = 487
Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 115/453 (25%), Positives = 201/453 (44%), Gaps = 30/453 (6%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ GK + + +K + + + V + DP D+V+ ++L GK +G N
Sbjct: 17 SAVSATQSGKIVKVPHHKSTHVTLAAKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTN 76
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
++ G+ + +++I + D+ L+ L F+ + I V + ++L G +
Sbjct: 77 LMAWDSRGRLIESINIEVTHDLNSLKAKLYEFLPNEEIEVHSAQNRLILSGQISNQAAMN 136
Query: 159 RAVELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+A+ ++ET+ + ++ S S++V +NL+ I G QV L+VT+AEV+R ++++
Sbjct: 137 KALRVAETYSAGQEADKENRSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKF 196
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG-------------DFSVKGVLDRFSFETVL 260
S+ S + GG F + F L
Sbjct: 197 DSNFHFFESNGNFSWGGTSAGAIIDDVNGGIGPIFNAPGIDNTGFLGTFIDGDTLFTFAL 256
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
++ + + LAEP LTA+SG A F +GG+ ++ +YGV L F P
Sbjct: 257 DIAKQNGSAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DDDGITIEYKEYGVGLKFIP 314
Query: 321 TVLSPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVL 370
TVLS I L + +VSE +P R A +T+EL G TI +
Sbjct: 315 TVLSDKHINLNLAIDVSEIANSATLTLNPGGTNGTYVIPPITRRSASSTLELADGQTIGI 374
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGLL ++++ + G+P S IP+LG +F + + ETE+ I TP L KP+ +S P
Sbjct: 375 AGLLSENVRDVVSGVPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRSKVSLP 434
Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
D + +D + + R I ++ E Q
Sbjct: 435 TDSFVEPNDFEYYLLGRGAYIAPTGKSKSNESQ 467
>gi|296444395|ref|ZP_06886360.1| type II and III secretion system protein [Methylosinus
trichosporium OB3b]
gi|296258042|gb|EFH05104.1| type II and III secretion system protein [Methylosinus
trichosporium OB3b]
Length = 485
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 165/487 (33%), Positives = 251/487 (51%), Gaps = 19/487 (3%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M +R ++ L A P A + SD + +++++G+ K II+
Sbjct: 1 MSGSRRHLIPTLATAL---ALVGAGSLPAVAAPQSWGVESDSDAIMSRRVAMGVGKSIIV 57
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+P D +++V +P A+ VV S R +Y+ G GQ + + G+Q+ NL+I I RD+
Sbjct: 58 DLPADAAEIVVGNPKVANAVVRSTRKLYIMGVETGQTTIFALDRSGRQIANLEISIGRDV 117
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN-- 178
L L + +SNI V+D ++L G V + ++QRAV++++ F ++S +
Sbjct: 118 GELGPLLHAALPNSNISARTVNDAIILTGTVDSASEAQRAVDIAKGFAARSASASAQSAG 177
Query: 179 --SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFG 235
+ V+N L I +DQV LKVT+AEV R +LKQ+G G +
Sbjct: 178 GSPADGLVVNALVIRTQDQVMLKVTVAEVERRVLKQLGISAQSGGETLLKGGWGQLVQQN 237
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V+ S + L A ER R LAEPT+TAISG+SA FT GG+
Sbjct: 238 PFAVNSALTASSLTINGNNGSTATLQAYERYGVSRVLAEPTVTAISGESAKFTVGGEIAV 297
Query: 296 KTVSSST------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NA 345
SS + + YGV L+FTP VL+ GRI L + TEV+E N
Sbjct: 298 PGNSSCIAGSTLCSSVGIVFKPYGVSLNFTPVVLAQGRILLHLATEVTEIDYQAAQAYNG 357
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P ++ RK +T+VELPSGG+I AGLL Q G+P L +P+LGALFR+ + R
Sbjct: 358 VTVPGFKTRKNETSVELPSGGSIATAGLLTQKSDQAINGLPGLINLPVLGALFRSRDYQR 417
Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
ETE+ I TP++ + ++ RD++RPDD ++ D +A+ RVN++Y + + Q
Sbjct: 418 NETELLIVVTPYIARALSARDVTRPDDGFADASDPQAWLLGRVNRLYANPQHPQAAPQ-L 476
Query: 466 KGAIGFI 472
KG IGFI
Sbjct: 477 KGRIGFI 483
>gi|303248302|ref|ZP_07334564.1| type II and III secretion system protein [Desulfovibrio
fructosovorans JJ]
gi|302490327|gb|EFL50239.1| type II and III secretion system protein [Desulfovibrio
fructosovorans JJ]
Length = 528
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 132/503 (26%), Positives = 219/503 (43%), Gaps = 75/503 (14%)
Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
+ AA + V + ++S+ + K +ILQ DV V V+ P AD V+ SPR
Sbjct: 20 CGMATLSYAAPGRMGTVAVRTAPRLSLTIGKSVILQSDADVSRVSVAQPEIADFVLLSPR 79
Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDT 144
+Y+ G+ G N+ L K D+ + DI+ L+ L + I V D+
Sbjct: 80 QIYVTGRAPGITNLTLWDKGDKVRAVYDLDVAPDISRLKKMLHDVMPGESGIEVMSSQDS 139
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
+ L G VR + ++A+ L+E + + KKV+NLL++ G QV L+V +AE
Sbjct: 140 IALSGTVRDSANMKKALALAEVY------------APKKVLNLLSVGGVQQVMLEVRVAE 187
Query: 205 VRRDILKQIGFQHSITGSSSGPSK----------------------------SFAADFGG 236
+ + ++ ++G + G + + + D
Sbjct: 188 MSKSLVNRMGINLNAVGDGNFAYTLIGSLSSVASGMFDTYYPQNAYQYITMTANSGDGNS 247
Query: 237 KFVSEGGDF--------------------------SVKGVLDRFSFETVLHALERATAIR 270
F S + G + V+ L++ ++
Sbjct: 248 SFDSTPIQLAYREFNQPSSKATMSFNQGTAVARWNTNFGGAGNTAMTAVVDMLKQNGLVK 307
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
LAEP L ++GQSA F +GGQ VSS G TS+ +GV L+FTPTV++ RI L
Sbjct: 308 ILAEPNLVCLNGQSADFLAGGQIPVP-VSSGLGTTSIEWKKFGVQLNFTPTVVAGDRINL 366
Query: 331 RIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
++ EVS +P+ R+ TT+EL +G T +AG+L + + + P
Sbjct: 367 KVNPEVSNLDYTRAITLLGSTVPAINTRQTSTTIELKNGQTFAIAGMLNEQSRDSMDKYP 426
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+L IP+LGALF++S++ +++TE+ I T LVKP+ + +S P D DD + F
Sbjct: 427 VLGDIPVLGALFKSSQYQKDQTELVILITAHLVKPLDKKAISLPTDSAHEPDDLEFFLG- 485
Query: 447 RVNKIYGPKEASEVEGQNYKGAI 469
+A +GQ+
Sbjct: 486 --ISRDAKSDAGAAQGQSLSTPA 506
>gi|218887827|ref|YP_002437148.1| type II and III secretion system protein [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|218758781|gb|ACL09680.1| type II and III secretion system protein [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 493
Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats.
Identities = 127/478 (26%), Positives = 211/478 (44%), Gaps = 40/478 (8%)
Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
A + + + + + K ++++ V +SD A VVV
Sbjct: 20 AAACAVLATVLLLAAAAQAQADATPQAVPLAVGKSMVVRTAQPAARVSMSDEAIAGVVVL 79
Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMV 141
SP+ +Y+ GK G A + L G DI + D+A L+ L R + D +I V V
Sbjct: 80 SPQQVYVTGKKAGGATLTLWNGAGAITQVYDIQVTPDLAQLKEMLHRVLPDEKDIMVMAV 139
Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
+++ L G VR+ A+++++ + + KV NL+ + G QV L+V
Sbjct: 140 GESITLAGTVRSAAGMTTALDVAKMY------------APDKVTNLMQVGGVHQVLLEVK 187
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPS-------------KSFAADFGGKFVSEGGDFSVK 248
+AE+R+ +L+++G + ++ G VS +
Sbjct: 188 VAEMRKSVLERLGIDLTYAWNNDFAFGMLNQLFTLDSQKGVVGVGPTGAVVSPNVTGMFR 247
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
R S L L++ ++ LAEPTL SG++A F +GG+ V G ++
Sbjct: 248 ATSGRASLMGFLDVLKQNGLVKVLAEPTLICRSGENADFLAGGEIPIP-VPQGLGTVAIE 306
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPS 364
YGV L FTPTV+S I +R+ EVSE VI +N +P+ R+A TTVEL
Sbjct: 307 FKKYGVTLGFTPTVVSDKLISMRVSPEVSELDYSNVIEINGFTIPAISTRRAATTVELAD 366
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G + +AGLL+D++++ + P+L +P+LG LFR+S + + ETE+ I TP L KP+
Sbjct: 367 GQSFAVAGLLRDEVRENIKKYPVLGDVPLLGTLFRSSNWQKNETELVIIVTPRLAKPLDG 426
Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNK---------IYGPKEASEVEGQNYKGAIGFIY 473
P D + + + F ++ Y S +G G +
Sbjct: 427 ATAKLPTDGFREPSEFEFFLQGKMEGAAPAITAPAAYANPRNSADAPSGMEGEFGHVL 484
>gi|218710406|ref|YP_002418027.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
gi|218323425|emb|CAV19602.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
Length = 484
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 118/455 (25%), Positives = 206/455 (45%), Gaps = 27/455 (5%)
Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
+S + GK +++ +K + + V + DP D+V+ ++L GK +G
Sbjct: 16 TLSFAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVMLKSSELFLIGKKLGAT 75
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
N++ G+ + +++I + D+ L+ L F+ D I V + ++L G V Q
Sbjct: 76 NLMAWDSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQM 135
Query: 158 QRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
A+ ++ET+ S ++ S S++ V+NL++I G QV L+VT+AEV+R ++++
Sbjct: 136 NVAMRIAETYSSGETADESKESGSEQAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195
Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHA 262
+S A+ + F + D F L
Sbjct: 196 FDANFHFFQTSGSNISWGASSVPAGVLGATPIFDIPTSTDYGILGSFIDSNTLFTFALDV 255
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
++ + LAEP LTA+SG A F +GG+ ++ +YGV L F PTV
Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTV 313
Query: 323 LSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
LS +I L + +VS +P +P R A +T+EL G TI +AG
Sbjct: 314 LSDKKINLNLAVDVSEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAG 373
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
LL ++++ + +P + +PILG LF + + ETE+ I TP L P+ ++ P D
Sbjct: 374 LLSENVRDVSNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLASPIDRSKVTLPTD 433
Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
+ +D + + R I P E+ + Q +G
Sbjct: 434 AFVDPNDLEYYLLGRSAYIAEPSESDSEQSQASQG 468
>gi|323137425|ref|ZP_08072503.1| type II and III secretion system protein [Methylocystis sp. ATCC
49242]
gi|322397412|gb|EFX99935.1| type II and III secretion system protein [Methylocystis sp. ATCC
49242]
Length = 504
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 163/503 (32%), Positives = 253/503 (50%), Gaps = 35/503 (6%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQV 62
+ R ++ + + A A + + + ++IS+G+ K II+ +
Sbjct: 1 MSRLMQNVIGAVWATVAVATATGIAPAHAQGPGVGVESGDNAMLARRISMGVGKSIIVDL 60
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
P D +V+V +P AD +V S R +Y+ G + GQ + + G+Q+ NL+I I RD+
Sbjct: 61 PRDATEVVVGNPKVADAIVRSARKLYIMGMDAGQTTIFAVDSSGRQVANLEISIGRDVGE 120
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS----------- 171
L L+ + SNI V+D ++L G V + ++ RAV++++ F S++
Sbjct: 121 LAPLLKAALPKSNITARTVNDIIILTGTVSSAGEALRAVDIAKGFASRAMGGGAGGGGGV 180
Query: 172 -------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
S+ V+N L I GE+QV LKVT+AEV R ++KQ+GF G +
Sbjct: 181 AGQASNSQVGGVGGSADGNVINALTIRGEEQVMLKVTVAEVERKVIKQLGFSAQAGGETI 240
Query: 225 -GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
S ++ S + + L A ER R LAEPT+TA+SG+
Sbjct: 241 LNGSWGKLVQENPFAINPTMSNSALIINGPNNTNATLKAFERYGVSRILAEPTVTAVSGE 300
Query: 284 SASFTSGGQHLYKTVSSSTGATS----------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
+A GG+ S T T+ +T YGV L+F P VLS GRI L +
Sbjct: 301 AAKMLVGGEIAVPGSGSCTFFTNGGGQPICSPGITFKSYGVSLNFVPIVLSEGRIHLHLA 360
Query: 334 TEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
EV+E + +P ++ RK +T+VELPSGG+I AGLL Q G+P L
Sbjct: 361 AEVTEVDLQNTFTYANVAVPGFKTRKNETSVELPSGGSIATAGLLTQKSSQAISGLPGLL 420
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
+PILGALFR+ + R ETE+ + TP++V+P++ +D+SRPDD ++ D + + RVN
Sbjct: 421 NLPILGALFRSRDYLRNETELLVIVTPYIVRPLSAQDVSRPDDGFADASDPQGWLLGRVN 480
Query: 450 KIYGPKEASEVEGQNYKGAIGFI 472
+IY + QN+KG IGFI
Sbjct: 481 RIY-STRNNPQLMQNFKGRIGFI 502
>gi|307294424|ref|ZP_07574268.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
gi|306880575|gb|EFN11792.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
Length = 503
Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats.
Identities = 133/481 (27%), Positives = 214/481 (44%), Gaps = 45/481 (9%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
M L + + + LP +A A + +++ ++ + LNK +L LV
Sbjct: 9 MLASLLTLSAGASLLPI--QAQAQIASLNLSNANHAGQLDVPLNKSQVLTADRPFAKALV 66
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
+ ADV+ + R++Y+ GK +G ++ L + +D+ + D+ L+ L +
Sbjct: 67 GNAEIADVLPMTNRSVYVLGKKMGTTSLTLYDSRNIMIAVVDVAVGPDVVTLKRQLSDLL 126
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
I + +D+VVL G + + RAV++++T+ KV+N++++
Sbjct: 127 PGQPIGARISNDSVVLTGTLSSAAAVDRAVQIAKTYAG------------DKVVNMMSVG 174
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK-------------- 237
QV L+V +E+ R KQ G + S
Sbjct: 175 ASQQVMLEVRFSEMSRGAAKQFGINTAFLSDSGKVVGGIGNAAQSSAILSDTNGRPIVDL 234
Query: 238 --FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ G + + + T L ALER + TLAEPTL A+SG++ASF +GG+
Sbjct: 235 SKILDSFGIGAANFSIGSLNITTALDALERKGVVTTLAEPTLVALSGETASFLAGGEFPI 294
Query: 296 KTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----V 340
S++G ++ +GV L FTPTVL G I L ++ EVS
Sbjct: 295 PVAQSNSGGGGGGGGNSGNAITIEFKPFGVSLGFTPTVLDDGIINLVVEPEVSSIDPSAS 354
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ VN +P + R+A TT+EL G + LAGLL+ D Q P+L IPI+GALFR+
Sbjct: 355 VTVNGLTIPGLQTRRASTTLELRDGQSFALAGLLRKDFQDTVRQFPILGSIPIIGALFRS 414
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
S F + ETE+ I TP LVKP+ D++ P D + F R +K G
Sbjct: 415 SGFQKSETELVIIVTPRLVKPMRAEDVALPTDRVKPPHELDLFLMGRTDKAVGINPLDPN 474
Query: 461 E 461
Sbjct: 475 A 475
>gi|292491519|ref|YP_003526958.1| type II and III secretion system protein [Nitrosococcus halophilus
Nc4]
gi|291580114|gb|ADE14571.1| type II and III secretion system protein [Nitrosococcus halophilus
Nc4]
Length = 565
Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats.
Identities = 127/544 (23%), Positives = 220/544 (40%), Gaps = 80/544 (14%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVE-----IGKGKKISIGLNKVII 59
+RT+ + + FL + L + A + + E + L K +
Sbjct: 13 RRTWLSGILFFLVINIIVFFSLTSLALAQTSPLTPRQSENLIIQSDIEGDFQVPLYKSGV 72
Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
+++ + + V +P AD+++ R +Y+ GK +G NV++ + + + +I + D
Sbjct: 73 IELEERAKRISVGNPGIADILMLHSRQLYVVGKALGTTNVVVWDKNERVFASFNIEVVHD 132
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS---------- 169
+ L+ L R + I V + ++L G V ++ + A +L++ FL
Sbjct: 133 LDTLKRKLHRLLPGEVIEVHSAQERIILSGQVSSVVKMKAAEDLAQGFLPECISAESNVL 192
Query: 170 -------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
+ V+NL+ + G QV L++ +AE+ R +L
Sbjct: 193 VRDTTQGTPIIIQQGDGGRGASGANQEGCKKGSVVNLMQVGGAHQVMLEIKVAEIARTVL 252
Query: 211 KQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------ 255
K+ S + S A F G + + G L+
Sbjct: 253 KRFDSNFNVFSFDSPWKFGANSGGASFPNALTPSGNEVPILGSLNGEDSPIGPVVDLFQP 312
Query: 256 --------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
E VL A + + LAEPTLT ++GQ A F SGG+
Sbjct: 313 NTPGIQDKGVFLSYLSSKFFLEAVLEASRQKGLAKVLAEPTLTTLTGQEAQFVSGGEFPI 372
Query: 296 KTVSSS-TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----------GVN 344
S TG ++ ++GV+++F P VL GRI L++ VSE N
Sbjct: 373 PVPQSGITGNVTIEFKEFGVIVNFLPLVLDSGRINLKLNVAVSELSQDVPVTLGVQGTEN 432
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+PS R A TVEL G TI +AGL+ D++++L +P L +PILGALFR+ F
Sbjct: 433 TFVIPSLTKRSAKATVELADGQTIGIAGLINDNLRELVTKLPGLGDVPILGALFRSQEFM 492
Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
+TE+ + TP L +P++ + + P D + D + + R+ + +G
Sbjct: 493 SGQTELVMFVTPHLARPISPQQVKLPTDSFVPPTDLEFYLMGRMEAREMSNSSPSSQGII 552
Query: 465 YKGA 468
G
Sbjct: 553 DIGP 556
>gi|218680971|ref|ZP_03528868.1| putative pilus assembly protein [Rhizobium etli CIAT 894]
Length = 434
Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats.
Identities = 214/438 (48%), Positives = 288/438 (65%), Gaps = 25/438 (5%)
Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
+GLNK +++ +P D D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++N
Sbjct: 2 LGLNKAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVN 61
Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
LDI IERD++ LE+ LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL
Sbjct: 62 LDIEIERDVSGLEVNLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGG 121
Query: 172 GRNQYANSS-----------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
++ + +V+NLL I GEDQVTLKVTIAEVRR++LKQ+G
Sbjct: 122 EATTRTETASGTGGDSSVALFAEGRQASQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLG 181
Query: 215 FQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
F + + +G + S +AD V G K + ++ T L+ALE+A ++T
Sbjct: 182 FDNLVSNSSGMTVAQLGSPSADSATSTVGGGLAALFKSTIGKYDISTYLNALEQAKVVKT 241
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LAEPTLTAISGQ+A+F SGGQ LY T S G +VT +YG+ L F P VLS GRI L+
Sbjct: 242 LAEPTLTAISGQAATFNSGGQQLYSTT-DSDGNVTVTPFNYGINLAFKPVVLSSGRISLQ 300
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
I+T VSEPV G Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKI
Sbjct: 301 IKTNVSEPVAGSGNAT---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKI 357
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
P+LG LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+
Sbjct: 358 PLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKV 417
Query: 452 YGPKEASEVEGQNYKGAI 469
YG +EA + Q + G+I
Sbjct: 418 YGRREAPVADAQ-FHGSI 434
>gi|315497465|ref|YP_004086269.1| type II and iii secretion system protein [Asticcacaulis excentricus
CB 48]
gi|315415477|gb|ADU12118.1| type II and III secretion system protein [Asticcacaulis excentricus
CB 48]
Length = 476
Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats.
Identities = 142/467 (30%), Positives = 241/467 (51%), Gaps = 19/467 (4%)
Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
+ + A P + + + + + +++ + ++ +PVD DV VS+P
Sbjct: 20 MAVSGVEAAPKPYSAPVSPMTVQTQTSGARTQVLNLAKGRSAVVDLPVDAADVFVSNPAV 79
Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
AD V+ +PR +++ G GQ++ I G+Q+LNL I + L T+++ S++
Sbjct: 80 ADAVLRTPRRIFVLGVAAGQSDAIFFDATGRQILNLQIRVGVSTDQLSDTVQKLYPQSDV 139
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+V+ V+ V+L G+V +S+ LS F + + ++N+L++AG+DQV
Sbjct: 140 QVQSVNGYVILSGVVANASESEAIQRLSVAFAEK----------PENIINMLSVAGKDQV 189
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
+LKV I EV++ +KQ+GF + +G + + + +K
Sbjct: 190 SLKVRIVEVQKSSIKQMGFNFNGLSGQTGEVQYALQNAPTYGTNGKALGGMKIGYADKLL 249
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
L A ER +RTLAEP L A+SG+SA F +GG+ + G +V YGV L
Sbjct: 250 SASLQAFERVGLVRTLAEPNLAAVSGESAKFLAGGEFPVPVAKDTQGRVTVEFKTYGVGL 309
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELPSGGTIVLA 371
FTP VLS G I L++ TEVSE V + +P VR+A+TTVELPSGG++++A
Sbjct: 310 GFTPVVLSNGTISLKLSTEVSEIVNTGSFSLDDTFTIPGLSVRRAETTVELPSGGSLMIA 369
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GLL+ +Q + +P ++ IP+LGALFR+ F E+TE+ + TP+++ + P
Sbjct: 370 GLLQSKYKQSIDALPGMTTIPVLGALFRSRDFLDEQTEMVVIVTPYIISAKSPDAFQTPA 429
Query: 432 DHYSVEDDAKAFFFNRVNKI----YGPKEASEVEGQNYKGAIGFIYK 474
D++ V D ++ F R+NK G + +Y+ IG++ +
Sbjct: 430 DNFQVASDLESVFLGRLNKSVRAKRGEVAEAPPLAGSYQAPIGYVIE 476
>gi|254506750|ref|ZP_05118890.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus
16]
gi|219550331|gb|EED27316.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus
16]
Length = 487
Score = 322 bits (824), Expect = 9e-86, Method: Composition-based stats.
Identities = 114/456 (25%), Positives = 204/456 (44%), Gaps = 30/456 (6%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ GK + + +K + + + V + DP D+V+ ++L GK +G N
Sbjct: 17 SATAATQSGKIVKVPHHKSTHVTLAGKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTN 76
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
++ G+ + +++I + D+ L+ L F+ + I+V + ++L G + +
Sbjct: 77 LMAWDRRGQLIESINIEVTHDLNSLKAKLYEFLPNEEIKVHSAQNRLILSGQISSQSAMN 136
Query: 159 RAVELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
A+ ++ET+ + ++ S S++V +NL+ I G QV L+VT+AEV+R ++++
Sbjct: 137 IALRVAETYSAGQEVDKENKSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKF 196
Query: 214 GFQHSITGSSSGPSKSF----------AADFGGKFVSEG---GDFSVKGVLDRFSFETVL 260
S+ S G F + G + F L
Sbjct: 197 DSNFHFFESNGSFSWGGTSAGAIIDDVGGGIGPIFNTPGIDSTGLLGTFIDGDTLFTFAL 256
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
++ + LAEP LTA+SG A F +GG+ + ++ +YGV L F P
Sbjct: 257 DIAKQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDENG--ITIEYKEYGVGLKFIP 314
Query: 321 TVLSPGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVL 370
TVLS I L + +VSE + +P R A +T+EL G TI +
Sbjct: 315 TVLSDKNINLNLAVDVSEIANTSSLTLSPGGTNSTYVIPPITRRSASSTLELADGQTIGI 374
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGLL ++++ + G+P S IP+LG +F + + ETE+ I TP L KP+ +S P
Sbjct: 375 AGLLSENVRDVVSGMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRNRVSLP 434
Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
D + +D + + R I ++ + Q+
Sbjct: 435 TDSFVEPNDFEYYLLGRGAYIAPSNQSRPQDVQDTN 470
>gi|260771478|ref|ZP_05880403.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio furnissii CIP 102972]
gi|260613604|gb|EEX38798.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio furnissii CIP 102972]
gi|315181060|gb|ADT87974.1| Flp pilus assembly protein, secretin CpaC [Vibrio furnissii NCTC
11218]
Length = 489
Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats.
Identities = 114/453 (25%), Positives = 200/453 (44%), Gaps = 30/453 (6%)
Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
GK +++ +K +++ V + DP D+V+ ++L GK +G N+
Sbjct: 18 VYAANQSGKVVTVPHHKSTYVKLQGAASRVSLGDPEVLDIVMLKADELFLIGKRLGSTNL 77
Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
+ G+ + +++I + D+ L+ L F+ + I V + ++L G V + +
Sbjct: 78 MAWDRRGQLLESINIEVTHDVNSLKAKLYEFLPNETISVHSAQNRLILSGQVSSQEKMNL 137
Query: 160 AVELSETFLSQSGRNQYANSSSK-----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
A+ L+ET+ S ++ +S +K V+NL++I G QV ++VT+AEV+R ++++
Sbjct: 138 ALRLAETYASGDTADKATDSRNKEAEKTGVVNLMSIGGAQQVMIEVTVAEVQRSLVRRFD 197
Query: 215 FQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVLH 261
+ S + G + + F L
Sbjct: 198 SNFHFFEGNGKFSWGATSAGGYIDDITGVAGPVFNAPTIDSTGLLSTFIDGDTLFTLALD 257
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
+ + LAEP LTA+SG A F +GG+ + ++ +YGV L F PT
Sbjct: 258 VAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPNRDG--ITIEYKEYGVGLKFIPT 315
Query: 322 VLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
VLS +I L + +VSE P A +P R A +T+EL G TI +A
Sbjct: 316 VLSDKKINLNLAVDVSEIASSTTLTVSPSGTNAAYYIPPITRRSAASTLELADGQTIGIA 375
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GLL ++++ P + IP+LG LF + + ETE+ I TP L KP+ + P
Sbjct: 376 GLLSENVRDSVSKFPGIGDIPVLGQLFNSQEYVSGETELVILVTPRLAKPIDRSKVVLPT 435
Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
D + D K + + I GP++ + +
Sbjct: 436 DAFVEPTDLKYYLLGQGAYIAGPRDVKRTKASD 468
>gi|51245387|ref|YP_065271.1| hypothetical protein DP1535 [Desulfotalea psychrophila LSv54]
gi|50876424|emb|CAG36264.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 480
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 126/490 (25%), Positives = 214/490 (43%), Gaps = 42/490 (8%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
F M+++ + + P E+ A V+ + G+ + + +N++ L+ ++
Sbjct: 7 FVRMLTVSICCLLV-MGGGPFAAESEATVL----INTKPGEPVQLTINRLAKLRSSEVIR 61
Query: 68 DVLVSDPTKADV---VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
+ +P A++ SP +++ GK++G + L G K + +I++ D+ L+
Sbjct: 62 RAHIVNPDIAELIYSKTQSPAWVFVSGKSIGTTQLTLWGARNKILGTFEIIVRPDVLGLK 121
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
+ N+ V D + L G V Q+ + L+E + + KV
Sbjct: 122 KHIHDVFPGENVSVRDSGDFLTLTGTVAGAVRLQKILALAEAY------------APSKV 169
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---- 240
+NLL + G QV L+V IAE+ + + Q+G + GSS G +
Sbjct: 170 INLLKVGGIQQVMLEVRIAEISKRVGNQLGINFGLDGSSGFGLSMLDGLSGLPGGTLPIE 229
Query: 241 --------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
G S+ + AL+ ++ LA+PTL A SGQSASF +GG+
Sbjct: 230 PARVLDGLNIGSGVNAVFGKSGSYIVAIDALQEDGLVKVLAKPTLIAQSGQSASFLAGGE 289
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDM 348
+ + + +GV L+FTPTVL GRI L + EVS+ +
Sbjct: 290 FPFPVAQQFDRFS-IEWKPFGVGLNFTPTVLGEGRISLLVSPEVSDLDFTNTISYAGYVV 348
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
PS R+ T VEL + +AGL+K++I++ + PLL IPILG LFR+S++ + ET
Sbjct: 349 PSIETRRMSTVVELNDNQSFAIAGLMKNNIRESIKKFPLLGDIPILGVLFRSSKYIKNET 408
Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK-----EASEVEGQ 463
E+ + TP LV PV +LS P D + + + A+
Sbjct: 409 ELVVVVTPHLVTPVDGDELSLPTDSFVEPTAFELLVLGMLEGKEKQTYVENASATGANSL 468
Query: 464 NYKGAIGFIY 473
+G G+I
Sbjct: 469 PLEGDFGYIV 478
>gi|258621447|ref|ZP_05716481.1| Flp pilus assembly protein [Vibrio mimicus VM573]
gi|262171232|ref|ZP_06038910.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus MB-451]
gi|258586835|gb|EEW11550.1| Flp pilus assembly protein [Vibrio mimicus VM573]
gi|261892308|gb|EEY38294.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus MB-451]
Length = 488
Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats.
Identities = 111/436 (25%), Positives = 190/436 (43%), Gaps = 30/436 (6%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ I GK +++ +K + + + V + DP D+V+ ++L G+ +G N
Sbjct: 17 TAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTN 76
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
++ G + +L++ + D+ L+ L + D I+V + ++L GMV +
Sbjct: 77 LMAWDSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMN 136
Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
A+ ++ET+ + ++ S V+NL+ I G QV L+VT+AEV+R ++++
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196
Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260
+ S + G E + F L
Sbjct: 197 DSNFHFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFAL 256
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+ + LAEP LTA+SG A F +GG+ ++ +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDKDG--VTIEYKEYGVGLKFIP 314
Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
T+LS RI L + +VSE + +P R A +T+EL G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGI 374
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGLL ++++ + +P IP+LG LFR+ + ETE+ I TP L KPV ++ P
Sbjct: 375 AGLLSENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLP 434
Query: 431 DDHYSVEDDAKAFFFN 446
D + D K +
Sbjct: 435 TDAFVEPSDFKYYLLG 450
>gi|258627504|ref|ZP_05722285.1| Flp pilus assembly protein [Vibrio mimicus VM603]
gi|258580310|gb|EEW05278.1| Flp pilus assembly protein [Vibrio mimicus VM603]
Length = 488
Score = 320 bits (819), Expect = 4e-85, Method: Composition-based stats.
Identities = 111/436 (25%), Positives = 190/436 (43%), Gaps = 30/436 (6%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ I GK +++ +K + + + V + DP D+V+ ++L G+ +G N
Sbjct: 17 TAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTN 76
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
++ G + +L++ + D+ L+ L + D I+V + ++L GMV +
Sbjct: 77 LMAWDSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMN 136
Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
A+ ++ET+ + ++ S V+NL+ I G QV L+VT+AEV+R ++++
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196
Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260
+ S + G E + F L
Sbjct: 197 DSNFHFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFAL 256
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+ + LAEP LTA+SG A F +GG+ ++ +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDKDG--VTIEYKEYGVGLKFIP 314
Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
T+LS RI L + +VSE + +P R A +T+EL G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGI 374
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGLL ++++ + +P IP+LG LFR+ + ETE+ I TP L KPV ++ P
Sbjct: 375 AGLLSENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLP 434
Query: 431 DDHYSVEDDAKAFFFN 446
D + D K +
Sbjct: 435 TDAFVEPSDFKYYLLG 450
>gi|262165919|ref|ZP_06033656.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus VM223]
gi|262025635|gb|EEY44303.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus VM223]
Length = 488
Score = 320 bits (819), Expect = 4e-85, Method: Composition-based stats.
Identities = 111/436 (25%), Positives = 190/436 (43%), Gaps = 30/436 (6%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ I GK +++ +K + + + V + DP D+V+ ++L G+ +G N
Sbjct: 17 TARGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTN 76
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
++ G + +L++ + D+ L+ L + D I+V + ++L GMV +
Sbjct: 77 LMAWDSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMN 136
Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
A+ ++ET+ + ++ S V+NL+ I G QV L+VT+AEV+R ++++
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196
Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260
+ S + G E + F L
Sbjct: 197 DSNFHFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFAL 256
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+ + LAEP LTA+SG A F +GG+ ++ +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDKDG--VTIEYKEYGVGLKFIP 314
Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
T+LS RI L + +VSE + +P R A +T+EL G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGI 374
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGLL ++++ + +P IP+LG LFR+ + ETE+ I TP L KPV ++ P
Sbjct: 375 AGLLSENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLP 434
Query: 431 DDHYSVEDDAKAFFFN 446
D + D K +
Sbjct: 435 TDAFVEPSDFKYYLLG 450
>gi|86147467|ref|ZP_01065779.1| Flp pilus assembly protein [Vibrio sp. MED222]
gi|85834760|gb|EAQ52906.1| Flp pilus assembly protein [Vibrio sp. MED222]
Length = 485
Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats.
Identities = 113/435 (25%), Positives = 197/435 (45%), Gaps = 27/435 (6%)
Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
S + GK +++ +K + + V + DP D+V+ ++L GK +G
Sbjct: 16 TASVAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVILKSNEVFLIGKKLGAT 75
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
N++ G+ + +++I + D+ L+ L F+ D I V + ++L G + Q
Sbjct: 76 NLMAWDSRGQLIESINIEVTHDLNSLKSKLYEFLPDETIEVHSAQNRLLLSGQISNQQKM 135
Query: 158 QRAVELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
A+ ++ET+ + + S S++V +NL++I G QV L+VT+AEV+R ++++
Sbjct: 136 NVAMRIAETYAAGQAADDSKESGSEQVAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195
Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHA 262
+S A+ + F + D F L
Sbjct: 196 FDANFHFFQTSGSNFSWGASSVPAGALGATPVFDIPTSTDYGILGSFIDSNTLFTFALDV 255
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
++ + LAEP LTA+SG A F +GG+ ++ +YGV L F PTV
Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTV 313
Query: 323 LSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
LS +I L + +VS +P +P R A +T+EL G TI +AG
Sbjct: 314 LSDKKINLNLAVDVSEIANSSSLTIDPGSTNATYFIPPITRRSASSTLELADGQTIGIAG 373
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
LL ++++ + +P + +PILG LF + + ETE+ I TP L KPV ++ P D
Sbjct: 374 LLSENVRDVSNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLAKPVDRSKVTLPTD 433
Query: 433 HYSVEDDAKAFFFNR 447
+ +D + + R
Sbjct: 434 AFVDPNDLEYYLLGR 448
>gi|239908021|ref|YP_002954762.1| bacterial type II and III secretion system protein family protein
[Desulfovibrio magneticus RS-1]
gi|239797887|dbj|BAH76876.1| bacterial type II and III secretion system protein family protein
[Desulfovibrio magneticus RS-1]
Length = 528
Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats.
Identities = 124/502 (24%), Positives = 218/502 (43%), Gaps = 80/502 (15%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
R + S + A ++ V + ++++ + K +ILQ
Sbjct: 4 RNCLPRLWARALAIALSLVLA-------APAQIVWGGVAPVAVRAAPRLALTIGKSVILQ 56
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
D+ V V+ P AD V+ SPR +Y+ G+ G N+ L K D+ + D +
Sbjct: 57 SDADIARVSVAQPDVADFVLLSPRQIYVTGRAPGITNLTLWDKGDKIRAVYDLDVAPDAS 116
Query: 122 HLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
L+ L + I V D++ L G VR + ++A+ L+E + +
Sbjct: 117 RLKKMLHDVMPGETGIEVLASQDSIALSGTVRDAESLKKALSLAEVY------------A 164
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------- 233
KKV+NLL+++G QV L+V +AE+ + ++ ++G + G +
Sbjct: 165 PKKVLNLLSVSGVQQVMLEVRVAEMSKSVVNRMGINLNAVGDGNFGYTLLGGLSTLADTV 224
Query: 234 ----------------FGGKFVSEGGDFSVK----------------------------- 248
F G S + +
Sbjct: 225 FNIDNVQNAYKYSTIKFNGSDGSSSTESATIQTRFREFNQPEQSKTVGLSQGTAAMRFST 284
Query: 249 --GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
G + VL L++ ++ LAEP L ++GQSA F +GG+ V S G TS
Sbjct: 285 NWGGAGNTTMTAVLDLLKQNGLVKILAEPNLVCLNGQSAKFLAGGEIPVP-VPSGLGTTS 343
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVEL 362
+ ++GV L FTPT ++ I L++ EVS+ +++ ++P+ R+A T+VEL
Sbjct: 344 IEWKEFGVGLKFTPT-VAGEVISLQVNPEVSDLDYTRAIKLDSFEIPAVLTRRASTSVEL 402
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
+G T +AGLLK++ ++ + P + IP+LG LF++S + ++++E+ I T LVKP+
Sbjct: 403 KNGQTFAIAGLLKEEGRESVDKYPWIGDIPVLGNLFKSSSYQKDQSELVILITAHLVKPL 462
Query: 423 AMRDLSRPDDHYSVEDDAKAFF 444
+D+ P D DD + F
Sbjct: 463 NKKDMILPTDGVHEPDDLEFFL 484
>gi|224824213|ref|ZP_03697321.1| type II and III secretion system protein [Lutiella nitroferrum
2002]
gi|224603632|gb|EEG09807.1| type II and III secretion system protein [Lutiella nitroferrum
2002]
Length = 520
Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats.
Identities = 143/518 (27%), Positives = 232/518 (44%), Gaps = 68/518 (13%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
+ L +S A P + A I +++ + K L+ PV +
Sbjct: 19 LATCGMLLLASYSQAATTTPKRLAATPSTVAPCNAIESAPLVNVTVGKSFRLKTPVPISR 78
Query: 69 VLVSDPT-----------------------------KADVVV--HSPRTMYLFGKNVGQA 97
+L+ +P ADV V SP +YL GK+VG
Sbjct: 79 ILLGNPEGSQAAQPKESTDANADKGKPSAGGSTKSGVADVDVILLSPSEIYLLGKSVGST 138
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSN-IRVEMVSDTVVLHGMVRTIQ 155
N+IL+G +G+ L D+ + D A L+ +L + + +N ++V SD++VL G V
Sbjct: 139 NIILLGRNGQCTLV-DVAVGADTASLQASLNQLLSPGANNVKVSAASDSLVLTGTVADSA 197
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
RA+ L+E + + KV+N++++ QV L+V IAE+ + +L ++G
Sbjct: 198 KLDRAMTLAEAYAGK-----------SKVINMMSVDAPQQVLLEVKIAEISKKLLDKLGV 246
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ + G + S+ + F + G + G+ D + + A ++ LAEP
Sbjct: 247 NIAGILNHGGWTYSWNSLFANDPL---GKALLSGINDSATRAFQIDAQHDDGLLKVLAEP 303
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
L AISGQ SF +GG+ ++T ++ ++GV L FTPTVL GRI L+
Sbjct: 304 NLMAISGQEGSFLAGGKIFIPVAQNNTNNGGSTITLEEKEFGVALRFTPTVLDGGRINLK 363
Query: 332 IQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ EVSE +PS+ R+A TTV+L G + + GLLK+++
Sbjct: 364 VAPEVSELNPEGVGISAIGVAGKSILPSFTTRRAATTVQLHDGQSFAIGGLLKNNVTTNI 423
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
P L +IPILGALFR++ F +++E+ TP LVKP+ D P D+Y + A+
Sbjct: 424 SAFPFLGEIPILGALFRSTSFQTDKSELVFVVTPRLVKPL-PPDYKLPTDNYIPPNRAEL 482
Query: 443 FFFNRVNKIYGPK------EASEVEGQNYKGAIGFIYK 474
F R+ EAS + + GF K
Sbjct: 483 FLGGRMEGRQPEPSASKASEASPQPEASTQAPSGFEVK 520
>gi|237678812|emb|CAQ57539.1| RhcC2 protein [Bradyrhizobium elkanii]
Length = 484
Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats.
Identities = 128/479 (26%), Positives = 209/479 (43%), Gaps = 18/479 (3%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG-KGKKISIGLNKVIIL 60
+ + + L + + G +++ ++ +
Sbjct: 18 SASRSAGLSRLCYVLCGFAMLFSSAAAAEIKRDGKGEPPRAAPGGTSGTLNLTSSQGKTV 77
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ + V+DPT AD S T+++FGK G+ ++ + +G+ + L +++ + I
Sbjct: 78 HLTAAATSIFVADPTIADYQAPSNTTIFVFGKKSGRTSLFALNENGEALAELRVVVTQPI 137
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
L TLR + D I V +L G + + A +++E FL +
Sbjct: 138 EDLRATLRAEVGDYPIHVSYTPRGAILSGTAPNAEVVETAKKVTEQFLG----------A 187
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
V+N + +AG QV L V +AEV R +K + + S +G D G
Sbjct: 188 GSLVVNKIQVAGSLQVNLSVRVAEVSRSAVKDLNIHFTA-SSPNGAFLISGKDGGSGAAG 246
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
GG + + VL AL LAEP LTA+SG+SASF +GG+ V
Sbjct: 247 GGGTIGIGFSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESASFLAGGEFPIP-VMQ 305
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKA 356
SV +GV L F PTVL+ +I +R++ EVSE +N ++P+ R+A
Sbjct: 306 DNRQVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKINGMEVPALSTRRA 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T VEL SG + + GL++ + P L +PILGALFR+S F + ETE+ I TP
Sbjct: 366 STVVELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSFQKRETELVIIVTP 425
Query: 417 FLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
++V+P +S P D + DA N + + ++A G+ GFI +
Sbjct: 426 YIVRPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSAPGLTGSAGFIIE 484
>gi|308050059|ref|YP_003913625.1| type II and III secretion system protein [Ferrimonas balearica DSM
9799]
gi|307632249|gb|ADN76551.1| type II and III secretion system protein [Ferrimonas balearica DSM
9799]
Length = 487
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 115/426 (26%), Positives = 199/426 (46%), Gaps = 19/426 (4%)
Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
+ ++K + + + V V +P AD+++ +P+ +Y+ G+ +G N+++ +
Sbjct: 47 SFPVPIHKSKTMSLANAAERVSVGNPAIADILLINPKELYILGRQLGSTNIMVWDDQDRL 106
Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
+ +DI I D+ L+ L RF+ D I V +V+ G V + A++L+ +
Sbjct: 107 VDIVDIEITHDLNGLKEKLHRFLPDEPIEVHSSQGQLVIGGQVSNLDRMNMALDLAHGYA 166
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
+ + ++ V+NL+++ G QV L+VT+ EV+R++ + + ++ G
Sbjct: 167 VAANNSDNTST----VLNLMSVGGGHQVMLEVTVTEVQRELARTLDSDFALVF--EGSDF 220
Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
G +S G F V F+ + ++ R LAEP LT +SGQ A F
Sbjct: 221 IGGLLGGDGLISNKGIFG-SYVSGDVLFDFAIDMAKQQGLARVLAEPNLTTMSGQMAEFL 279
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
SGG+ T++ ++GV + F PTVL GRI L + VSE G +
Sbjct: 280 SGGEFPIPVPDRDG--TTIEYKEFGVGVKFVPTVLDSGRINLNLNVLVSELSNANAVGVI 337
Query: 349 P----------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
P S R A++T+EL G TI +AGLL +++ + +P L +IP+LG LF
Sbjct: 338 PEGSTTALVTPSITKRSANSTIELGDGQTIAIAGLLSSTVRESMDELPGLGEIPVLGQLF 397
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
+ + ETE+ I TP LV+PV L P D + D + R++K + +
Sbjct: 398 SSQEYRNGETELVILVTPRLVRPVDREKLVLPTDGFVDPTDLGFYLMGRLSKRDEDVQPN 457
Query: 459 EVEGQN 464
Sbjct: 458 TNPNSA 463
>gi|28899193|ref|NP_798798.1| putative pilus assembly transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836824|ref|ZP_01989491.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
gi|260361569|ref|ZP_05774596.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030]
gi|260876726|ref|ZP_05889081.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034]
gi|260898195|ref|ZP_05906691.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466]
gi|260900397|ref|ZP_05908792.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037]
gi|28807417|dbj|BAC60682.1| putative pilus assembly transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|149749970|gb|EDM60715.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
gi|308089085|gb|EFO38780.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466]
gi|308091468|gb|EFO41163.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034]
gi|308109123|gb|EFO46663.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037]
gi|308114031|gb|EFO51571.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030]
gi|328474270|gb|EGF45075.1| pilus assembly protein CpaC [Vibrio parahaemolyticus 10329]
Length = 487
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 120/437 (27%), Positives = 205/437 (46%), Gaps = 24/437 (5%)
Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
+++ G+ +S+ ++ L + + V + DP D+VV ++L GK +G
Sbjct: 16 LSVHAATAQSGRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGT 75
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
NV + G+ + ++ + D+ L+ L +F+ D +I V + VVL G+V + Q+
Sbjct: 76 TNVSVWDSRGRLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQN 135
Query: 157 SQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
AV+++ETF ++ +++ V+NLL+I G QVTL+VT+AEV+R ++++
Sbjct: 136 MDIAVKIAETFALGDAADEEDDNAKDDESSVINLLSIGGAQQVTLEVTVAEVQRSLVRRF 195
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALE 264
S + GG F + F L +
Sbjct: 196 DSNFHFFQKSGDFTWGATTAGGGIDNIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ + LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS
Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNEDG--ITIDYKEYGVQLDFVPFILS 313
Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
RI L++ VSE +P R A TT+EL G TI +AGLL
Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
++ + + +GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D +
Sbjct: 374 SENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRVTLPTDGF 433
Query: 435 SVEDDAKAFFFNRVNKI 451
+D + + + K+
Sbjct: 434 VAPNDVEFYLLGKGAKL 450
>gi|27365106|ref|NP_760634.1| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus
CMCP6]
gi|27361252|gb|AAO10161.1| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus CMCP6]
Length = 488
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 111/454 (24%), Positives = 195/454 (42%), Gaps = 30/454 (6%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ GK +++ +K + + + V + DP D+V+ ++L G+ +G N
Sbjct: 17 TAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTN 76
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
++ G + +++I + D+ L+ L F+ + I+V + ++L GMV T +
Sbjct: 77 LMAWDSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMN 136
Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
A+ ++ET+ + ++ S V+NL+ I G QV L+VT+AEV+R ++++
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196
Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260
++ S + G + + F L
Sbjct: 197 DSNFHFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFAL 256
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+ + LAEP LTA+SG A F +GG+ S ++ +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSDG--VTIEYKEYGVGLKFVP 314
Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
T+LS RI L + +VSE + +P R A +T+EL G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGI 374
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGLL ++++ + +P IP+LG LF + + ETE+ I TP L KP+ ++ P
Sbjct: 375 AGLLSENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLP 434
Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
D + D K + I + Q
Sbjct: 435 TDAFVEPSDLKYYLLGVGAYIAESPTNANAAAQP 468
>gi|317154605|ref|YP_004122653.1| type II and III secretion system protein [Desulfovibrio aespoeensis
Aspo-2]
gi|316944856|gb|ADU63907.1| type II and III secretion system protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 478
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 133/475 (28%), Positives = 217/475 (45%), Gaps = 32/475 (6%)
Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
R + + FL + +V+ L P+ A+ V+N + IS+ ++K IL
Sbjct: 4 RPPRSFLLAFLMALAVTVSGLVPLAVADVDVLNTEAPGV-----ISLVVSKSTILTADAP 58
Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
V V ++ P A VVV SP +Y+ G+ +G + L G+ D++I D+ L+
Sbjct: 59 VSRVSLAQPETASVVVLSPTQIYITGRKLGTTTLTLWS-GGQVSGVYDLVITPDVTRLKR 117
Query: 126 TLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
+ + ++V +++ L G V D + L+E + KV
Sbjct: 118 MIHEILPRERSVQVLSSGESITLSGSVSNTGDLTSVLSLAEA------------EAPGKV 165
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------GPSKSFAADFGGK 237
+NLL + G QV L+V +AE+ R LK++G + T S+ S
Sbjct: 166 VNLLRVDGVQQVMLQVRVAEMSRTALKRMGINLAATFSNFTVYSFLNNLSSLANTGSNVI 225
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+++ + V+ + +L AL+ R LAEP LT +SG+SA F GG+
Sbjct: 226 ELTDKINSVVRYNSGSTNVVGMLDALKAHGLARLLAEPNLTCVSGESADFLVGGEIPIPK 285
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRV 353
+ G S+ +GV L FTPTVLS G I L + EVSE ++P+
Sbjct: 286 -PGALGTVSIEFKPFGVGLEFTPTVLSSGAINLHVSPEVSELDYTNALRYQGYEIPAIST 344
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
RKA T V+L G + +AGL+ + +++ P+L IP+LG LFR+S + + +TE+ I
Sbjct: 345 RKASTVVDLADGQSFAIAGLISESLKENNHRFPVLGDIPVLGTLFRSSDYQKNKTELVII 404
Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
T LVKP+ M + P D + D + + + G A+ V Q G+
Sbjct: 405 VTAHLVKPLDMAGQTLPGDGFKEPTDYEFYMLGLLEG-QGASPAAMVGAQARSGS 458
>gi|37680844|ref|NP_935453.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
gi|37199593|dbj|BAC95424.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
Length = 488
Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats.
Identities = 111/454 (24%), Positives = 195/454 (42%), Gaps = 30/454 (6%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ GK +++ +K + + + V + DP D+V+ ++L G+ +G N
Sbjct: 17 TAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTN 76
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
++ G + +++I + D+ L+ L F+ + I+V + ++L GMV T +
Sbjct: 77 LMAWDSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMN 136
Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
A+ ++ET+ + ++ S V+NL+ I G QV L+VT+AEV+R ++++
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196
Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260
++ S + G + + F L
Sbjct: 197 DSNFHFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFAL 256
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+ + LAEP LTA+SG A F +GG+ S ++ +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSDG--VTIEYKEYGVGLKFVP 314
Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
T+LS RI L + +VSE + +P R A +T+EL G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGI 374
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGLL ++++ + +P IP+LG LF + + ETE+ I TP L KP+ ++ P
Sbjct: 375 AGLLSENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLP 434
Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
D + D K + I + Q
Sbjct: 435 TDAFVEPSDLKYYLLGVGAYIAESPTNANATAQP 468
>gi|320155489|ref|YP_004187868.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus MO6-24/O]
gi|319930801|gb|ADV85665.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus MO6-24/O]
Length = 488
Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats.
Identities = 109/436 (25%), Positives = 192/436 (44%), Gaps = 30/436 (6%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ GK +++ +K + + + V + DP D+V+ ++L G+ +G N
Sbjct: 17 TAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTN 76
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
++ G + +++I + D+ L+ L F+ + I+V + ++L GMV T +
Sbjct: 77 LMAWDSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMN 136
Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
A+ ++ET+ + ++ S V+NL+ I G QV L+VT+AEV+R ++++
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196
Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260
++ S + G + + F L
Sbjct: 197 DSNFHFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFAL 256
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+ + LAEP LTA+SG A F +GG+ S ++ +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSDG--VTIEYKEYGVGLKFVP 314
Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
T+LS RI L + +VSE + +P R A +T+EL G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGI 374
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGLL ++++ + +P IP+LG LF + + ETE+ I TP L KP+ ++ P
Sbjct: 375 AGLLSENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLP 434
Query: 431 DDHYSVEDDAKAFFFN 446
D + D K +
Sbjct: 435 TDAFVEPSDLKYYLLG 450
>gi|260776715|ref|ZP_05885610.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260607938|gb|EEX34203.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 476
Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats.
Identities = 109/451 (24%), Positives = 195/451 (43%), Gaps = 30/451 (6%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
K + + +K + + + V + DP D+V+ ++L GK +G N++
Sbjct: 9 AATQSSKVVKVPHHKSTHVTLVGKAKRVSLGDPEVLDIVMLKSNEVFLIGKKLGSTNLMA 68
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
G+ + +++I + D+ L+ L F+ D I V + ++L G+V + A+
Sbjct: 69 WDSRGRLIESINIEVTHDLNSLKAKLFEFLPDEEIGVHSAQNRLILSGLVSSQSAMNIAL 128
Query: 162 ELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
++ET+ + ++ S S++V +NLL I G QV L+VT+AEV+R ++++
Sbjct: 129 RVAETYAAGQEVDKETESLSEQVSKTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKFDSN 188
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG-------------GDFSVKGVLDRFSFETVLHAL 263
SS + + G + F L
Sbjct: 189 FHFFQSSGDFNWGGTSAGGSIDDVNNVVAPIFNAPTIENTGLLGTLIDSNTFFTFALDIA 248
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
++ + LAEP LTA+SG A F +GG+ ++ +YGV L F PT+L
Sbjct: 249 KQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTIL 306
Query: 324 SPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ +I L + +VSE +P R A +T+EL G TI +AGL
Sbjct: 307 TDQKINLNLAVDVSEIANSATLTLAPGGTNATYVIPPITRRSASSTLELADGQTIGIAGL 366
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
L ++++ +P S IPILG +F + + ETE+ I TP L KP+ ++ P D
Sbjct: 367 LSENVRDSVAEMPGFSDIPILGQMFNSQEYISGETELVILVTPRLAKPIDRNRVTLPTDS 426
Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
+ +D + + R + + ++
Sbjct: 427 FVEPNDFEYYLLGRGAYLEPADASKPKAERS 457
>gi|153834055|ref|ZP_01986722.1| Flp pilus assembly protein [Vibrio harveyi HY01]
gi|148869610|gb|EDL68600.1| Flp pilus assembly protein [Vibrio harveyi HY01]
Length = 486
Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats.
Identities = 121/436 (27%), Positives = 205/436 (47%), Gaps = 23/436 (5%)
Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
++++ GK +S+ ++ L + + V + DP D++V ++L GK +G
Sbjct: 16 LSVNAAPAQSGKVVSVAHHQSTQLMISGKAKKVTLGDPEVLDIIVLRSNELFLVGKKLGT 75
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
NV + G+ + ++ + D+ L+ L +F+ D +I V + VVL G+V T Q+
Sbjct: 76 TNVSVWDSRGRLIEQFNVEVTHDLNTLKSKLYQFLPDESIEVHSAQEKVVLRGLVSTQQN 135
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
AV+++ETF + ++ + S V+NLL+I G QVTL+VT+AEV+R ++++
Sbjct: 136 MDTAVKIAETFAAGEAADEGEDDSKDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRRFD 195
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALER 265
S + GG F + F L +
Sbjct: 196 SNFHFFQKSGDFTWGATTAGGGIDNIGPILNIPSVDDFGFLGSFIDSNTLFTFALDVARQ 255
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+ LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS
Sbjct: 256 NGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNEDG--ITIDYKEYGVQLDFVPYILSD 313
Query: 326 GRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
RI L++ VSE +P R A TT+EL G TI +AGLL
Sbjct: 314 KRINLKMNVNVSEIANSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLS 373
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
++ + + +GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D +
Sbjct: 374 ENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFV 433
Query: 436 VEDDAKAFFFNRVNKI 451
+D + + + ++
Sbjct: 434 SPNDVEFYLLGKGAEL 449
>gi|323491532|ref|ZP_08096711.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
gi|323314108|gb|EGA67193.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
Length = 485
Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats.
Identities = 114/455 (25%), Positives = 199/455 (43%), Gaps = 30/455 (6%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
++ GK + + +K + + + V + DP D+V+ ++L GK +G N
Sbjct: 17 VTYAASQSGKVVKVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDELFLIGKKLGSTN 76
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
++ G+ + +++I + D+ L+ L F+ + +I V + ++L G +
Sbjct: 77 LMAWDSRGQLIESINIEVTHDLNSLKAKLFEFLPNESIEVHSAQNRLILSGQISNQAAMN 136
Query: 159 RAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
A+ ++ET+ + ++ S SK+ V+NL+ I G QV L+VT+AEV+R ++++
Sbjct: 137 IALRVAETYSAGRQADKENKSLSKQAEKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKF 196
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL----------DRFSFETVLHAL 263
+ SS K G F F L
Sbjct: 197 DANFAFFQSSGSKFKWGGTSTGATVPGATPIFEAPSTGDYGILGSFIDGNTLFTFALDVA 256
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
+ + LAEP LTA+SG A F +GG+ ++ +YGV L F PTVL
Sbjct: 257 RQNGTAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTVL 314
Query: 324 SPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
S +I L + +VSE + +P R A +T+EL G TI +AGL
Sbjct: 315 SDKKINLNLAVDVSEIANSSSLTLSPGSTNSTYIIPPITRRSASSTLELADGQTIGIAGL 374
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
L ++++ + +P S IPILG +F + + ETE+ I TP L +P+ ++ P D
Sbjct: 375 LSENVRDVANEMPGFSDIPILGQMFNSQEYVSGETELVILVTPRLAQPIDRNKVTLPTDS 434
Query: 434 YSVEDDAKAFFFNR---VNKIYGPKEASEVEGQNY 465
+ +D + + R + +A V Y
Sbjct: 435 FVEPNDFEYYLLGRGSYLAPASQASQAKPVAEPEY 469
>gi|149911409|ref|ZP_01900027.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
gi|149805517|gb|EDM65522.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
Length = 489
Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats.
Identities = 111/427 (25%), Positives = 191/427 (44%), Gaps = 20/427 (4%)
Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
+ I + K LQ+ + V V + AD+++ R +Y+ GK +G N+++ D
Sbjct: 44 SVRIPIFKSKTLQMDKAIHRVSVGNSDIADILILRSRELYIVGKRLGTTNMMVWDKDDNL 103
Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
+ ++ + D+ L L +++ + +I VE +V+ G V ++ AVE++E +
Sbjct: 104 VHVQNLEVTHDLNSLRKRLYKYLPNEDIGVETSQGQLVVSGQVSSLVKMNTAVEIAEGYA 163
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSS 224
+ + + + V+N++++ G QV L+VT+AEV DI + + + +
Sbjct: 164 TAANVGKSNSI----VVNMMSVGGGQQVMLEVTVAEVSTDIGRNLDGNTVLGAFGSDGFA 219
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
G S + + + F + + LAEP LTA+SGQS
Sbjct: 220 GIGTGTGNVPTNILGSIDTNIFARYLTGDMLFSVAFDVAKSKGLTKILAEPNLTALSGQS 279
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341
A F SGG++ S+ ++ D+GV + F PTVL G+I L ++ VSE
Sbjct: 280 AEFLSGGEYPVPV--STDDGITIEYRDFGVGVSFVPTVLDSGKINLNLKVLVSELSSVNS 337
Query: 342 -------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
+ PS R TTVEL G TIV+ GLL D +++ P L IPIL
Sbjct: 338 VTISASDTNTSTITPSLIKRSTATTVELGDGQTIVIGGLLSDSLRESITKFPGLGDIPIL 397
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
G LF + + +TE+ I TP LV+P + P D + D + + ++ +
Sbjct: 398 GQLFTSQEYISGQTELVIMVTPRLVRPFNKDGMILPTDGFVPVSDMEFYLLGKMTQQEKG 457
Query: 455 KEASEVE 461
+
Sbjct: 458 SDTKNPN 464
>gi|283852073|ref|ZP_06369347.1| type II and III secretion system protein [Desulfovibrio sp.
FW1012B]
gi|283572463|gb|EFC20449.1| type II and III secretion system protein [Desulfovibrio sp.
FW1012B]
Length = 527
Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats.
Identities = 143/523 (27%), Positives = 229/523 (43%), Gaps = 82/523 (15%)
Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
+++ L + S AA ++ V + K+S+ + K +ILQ DV V
Sbjct: 12 RLLAWVLVAGLASTGY--------AAPAVVAPVAVRSTPKLSLTIGKSVILQSDADVSRV 63
Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
V+ P AD V+ SPR +Y+ G+ G N+ L K D+ + DI L+ L
Sbjct: 64 SVAQPEIADFVLLSPRQVYVTGRAPGVTNLTLWDKGDKIRAVYDLDVAPDITRLKKMLHD 123
Query: 130 FIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
+ I V D + L G VR ++ ++A+ L+E + + KKV+NL+
Sbjct: 124 VLPGEPGIEVRASQDAIALAGTVRDAENMKKALTLAEVY------------APKKVVNLM 171
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIG----------FQHSITGSSSGPSKSF-------- 230
+ G QV L+V +AE+ + +L ++G F +++ G + + S
Sbjct: 172 AVGGVQQVMLEVRVAEMSKSVLNRMGINLNAIGDGNFAYTLIGGLTSVAGSMFNMDATQN 231
Query: 231 ----------AADFGGKFVSEGGDFSVK--------------------------GVLDRF 254
AD F S S + G
Sbjct: 232 VYQYITMTAKGADGNTSFDSSPIQLSYREFNQPSNRATATMNQGTAVARWNTNWGGAGNT 291
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
+ VL L+ ++ LAEP L ++GQ+A F +GGQ V S G TS+ D+GV
Sbjct: 292 AMTAVLDVLKENGLVKILAEPNLVCLNGQTADFLAGGQIPVP-VPSGLGTTSIEWKDFGV 350
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
L FTPT++ RI L++ EVS+ I + +P+ R+ TTVEL +G T +
Sbjct: 351 GLKFTPTIVGGDRINLQVHPEVSDLDYAHAIQLQGSTIPAINTRRTSTTVELKNGQTFAV 410
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AG+LK++ + + P++ IPILG LF++S+F +++TE+ I T L KP+ + +S P
Sbjct: 411 AGMLKEEARSTFDKYPVVGDIPILGNLFKSSQFQKDQTELVILITAHLAKPLDKKAVSLP 470
Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASE--VEGQNYKGAIGF 471
D DD + F R + A V G G G
Sbjct: 471 TDSAHEPDDLEFFLGIRRDGGQATPAAGPLAVSGAALDGDFGH 513
>gi|304320647|ref|YP_003854290.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503]
gi|303299549|gb|ADM09148.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503]
Length = 494
Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats.
Identities = 144/502 (28%), Positives = 239/502 (47%), Gaps = 42/502 (8%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
MR + + L + PS+A+ + +++ + L K I+
Sbjct: 5 MRKILSVMAGLAGAVLIGTGPSMAQPGGSTPLEFETTYDAGGNGLASREVLLPLGKAAII 64
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
++P D++VSDP + V+ +P+ ++L G+ GQAN Q+LNL+I +E+D
Sbjct: 65 ELPRPATDIIVSDPDIVEAVIRTPQRVFLMGREAGQANAFFFDRANNQILNLEIRVEQDA 124
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+ + + + ++ I VE ++ V++HG V D+QRA E++ F +
Sbjct: 125 DTIRELMTKLVPNARISVESLNGNVIIHGTVDNASDAQRAGEIASRFAGE---------- 174
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFG 235
+N+L + QV LK+ I E++R +++Q+G + + FA A G
Sbjct: 175 -DNFVNMLKVREPSQVLLKIKIVEMQRRLVRQLGIDLNGVAQVDRSAIEFAVQNSFAISG 233
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ S G D + + E+ ++TLAEP++ A+SG++ASF +GG+
Sbjct: 234 QSLGGINANLSTPGFGDITNLDFAFDIFEQNGLVKTLAEPSIVALSGRNASFLAGGEFPV 293
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------------- 341
S+ G SVT +GV L F P V S RI L + TEVS+
Sbjct: 294 PEA-SANGTPSVTFKPFGVQLEFQPVVYSKNRIQLTLATEVSDVSNVNGLSIAGATQAEE 352
Query: 342 ----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+P R A TTVELPSGG++ LAGLL++DI ++ +G+P L +
Sbjct: 353 DPDTGEIIEQTFEGFIVPGTVSRSAATTVELPSGGSLALAGLLQEDINEVIDGVPGLKET 412
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
P+LGALFR+ F ++TE+ I ATP+LV+P + L+ P Y+ ++ ++
Sbjct: 413 PVLGALFRSQEFQSQQTELVIIATPYLVEPTDLAALTDPAQGYAPPSPVQSVILGQLESA 472
Query: 452 YGPKEASEVEGQNYKGAIGFIY 473
YG + + Q G IGFI
Sbjct: 473 YGVRGRKARDAQ-LSGPIGFIL 493
>gi|197295153|ref|YP_002153694.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|195944632|emb|CAR57236.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 644
Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats.
Identities = 123/439 (28%), Positives = 215/439 (48%), Gaps = 18/439 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ + +++ L K +++ +P V++ + +P A + SP+T+Y+ G VG N+I+
Sbjct: 92 GAVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIV 151
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +L + + + +I V + T+VL G V + Q +Q+A
Sbjct: 152 QGKSGACR-VIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQA 210
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
V+++ + +G V+N+LN+ QV L+V +AEV + ++ Q+G +I
Sbjct: 211 VQIAHAYGDSAGDAAGGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQ 270
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G S + ++ S V + F A ++ LAEP L I
Sbjct: 271 GGFGSWSGALVSNLLAGVASGA----VFNKANNRPFSIAADAQNTDNLVKILAEPNLVTI 326
Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
SGQ A+F +GG+ SS T ++ ++GV L FTPTVL+ GRI L++ EVS
Sbjct: 327 SGQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 386
Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
E +P R+A TTV++ G + + GL+KD+ + IP +
Sbjct: 387 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGV 446
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
++P+LGALFR++ F ++ TE+ TP LVKP+ D++ P D +S ++ + +
Sbjct: 447 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVYATGNM 506
Query: 449 NKIYGPKEASEVEGQNYKG 467
G ++A Q G
Sbjct: 507 EGRGGVRKAGAQPMQPANG 525
>gi|78060314|ref|YP_366889.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
gi|77964864|gb|ABB06245.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
Length = 652
Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats.
Identities = 118/429 (27%), Positives = 210/429 (48%), Gaps = 18/429 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+
Sbjct: 92 GAVRESTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 151
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +L + + + +I V + T+VL G V + +Q+A
Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQASLMQLMPNERDIHVSTAAGTIVLAGTVSSSMAAQQA 210
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
++++ + +G + V+N+LN+ QV L+V +AEV + ++ Q+G +I
Sbjct: 211 MQIARAYGDSAGDPAGGGKAGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSALNIQ 270
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G S + ++ + + F A ++ LAEP L I
Sbjct: 271 GGFGSWSGALVSNLLAGVATG----IAFSKANNKPFNLAADAQNTDNLVKILAEPNLVTI 326
Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
SGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EVS
Sbjct: 327 SGQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLSNGRISLKVAPEVS 386
Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
E +P R+A TTV++ G T + GL+KD+ + +P +
Sbjct: 387 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMGDGETFAIGGLIKDNGTGALKALPGV 446
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
+IP+LGAL R++ F ++ TE+ TP LVKP+ D+ P D +S ++ + +
Sbjct: 447 GEIPVLGALLRSTSFQQDRTELIFVITPHLVKPLQTADVPLPTDSFSKPNEVDVYATGNM 506
Query: 449 NKIYGPKEA 457
G ++
Sbjct: 507 EGRGGVRKP 515
>gi|91788411|ref|YP_549363.1| type II and III secretion system protein [Polaromonas sp. JS666]
gi|91697636|gb|ABE44465.1| type II and III secretion system protein [Polaromonas sp. JS666]
Length = 514
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 132/488 (27%), Positives = 224/488 (45%), Gaps = 42/488 (8%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGK--------GKKISIGLNKVIILQVPVDVQ 67
L + NP A P K+A A + +I++ K ++++P
Sbjct: 40 LAAKNPPTATSGPGKQAATAQPKAVVTQARAPITGKVELAPQINLSEGKSTLMRLPSPAT 99
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
+ V D DV++ +P +Y+ GK+VG N+IL +DI + D L L
Sbjct: 100 RLSVGDARIVDVILLNPSELYMLGKSVGSTNLILWNKANDA-TIIDIAVGMDTVALRSRL 158
Query: 128 RRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS------- 179
+ A ++++ +DT++L GMV + + + + ++ ++ +S R+ A
Sbjct: 159 EQMFASEKDLKITTAADTLILSGMVSDVVKADQILSVANAYVQRSSRSGQAGGASGGSAG 218
Query: 180 ----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
S KV+N+L+IA QV L+V +AEV + + Q+G ++ + + ++
Sbjct: 219 GQQSDSAKVVNMLSIAAPQQVMLEVQVAEVSKTLADQLGASIGGRKTTGSWTYTLLSNLL 278
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
S G G + A + ++ LAEPT+ AISGQ ASF +GG+
Sbjct: 279 TGAASSIGAVKNSGNF------LTIDAQKGDGLLKILAEPTIMAISGQEASFLAGGKIFI 332
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---------VIGVNAG 346
S + G ++ ++GV + F PTVL GRI L++ EVS+
Sbjct: 333 PVKSGNNGEIALEEKEFGVSVKFLPTVLEGGRINLKVAPEVSDLNRQGVGISATGSSTTA 392
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+PS+ R+A TTV+L G + + GL+K+++ PLL ++P+LGALFR+S F +
Sbjct: 393 ILPSFTTRRASTTVQLFDGQSFAIGGLIKNNVTANINAFPLLGEVPVLGALFRSSDFQTD 452
Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+E+ TP LVKP+ D P D Y ++ F ++ P E ++ G
Sbjct: 453 RSELVFIVTPHLVKPL-PADYKLPTDPYIQPSRSEFFLGGKMEGA-APPEGNKPAGPAT- 509
Query: 467 GAIGFIYK 474
GF K
Sbjct: 510 ---GFEVK 514
>gi|107028248|ref|YP_625343.1| type II and III secretion system protein [Burkholderia cenocepacia
AU 1054]
gi|116687159|ref|YP_840406.1| type II and III secretion system protein [Burkholderia cenocepacia
HI2424]
gi|105897412|gb|ABF80370.1| type II and III secretion system protein [Burkholderia cenocepacia
AU 1054]
gi|116652874|gb|ABK13513.1| type II and III secretion system protein [Burkholderia cenocepacia
HI2424]
Length = 642
Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats.
Identities = 122/439 (27%), Positives = 215/439 (48%), Gaps = 19/439 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ + +++ L K +++ +P V++ + +P A + SP+T+Y+ G VG N+I+
Sbjct: 92 GAVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIV 151
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +L + + + +I V + T+VL G V + Q +Q+A
Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQA 210
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
V+++ + S + V+N+LN+ QV L+V +AEV + ++ Q+G +I
Sbjct: 211 VQIAHAY-GDSAGDAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQ 269
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G S + ++ S V + F A ++ LAEP L I
Sbjct: 270 GGFGSWSGALVSNLLAGVASGA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTI 325
Query: 281 SGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
SGQ A+F +GG+ S + + ++ ++GV L FTPTVL+ GRI L++ EVS
Sbjct: 326 SGQEATFLAGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385
Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
E +P R+A TTV++ G + + GL+KD+ + IP +
Sbjct: 386 ELSQTGVTLSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGV 445
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
++P+LGALFR++ F ++ TE+ TP LVKP+ D++ P D +S ++ F +
Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVFATGNM 505
Query: 449 NKIYGPKEASEVEGQNYKG 467
G ++A Q G
Sbjct: 506 EGRGGVRKAGAQPMQPANG 524
>gi|170734868|ref|YP_001773982.1| type II and III secretion system protein [Burkholderia cenocepacia
MC0-3]
gi|169820906|gb|ACA95487.1| type II and III secretion system protein [Burkholderia cenocepacia
MC0-3]
Length = 646
Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats.
Identities = 122/439 (27%), Positives = 215/439 (48%), Gaps = 19/439 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ + +++ L K +++ +P V++ + +P A + SP+T+Y+ G VG N+I+
Sbjct: 92 GAVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIV 151
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +L + + + +I V + T+VL G V + Q +Q+A
Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQA 210
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
V+++ + S + V+N+LN+ QV L+V +AEV + ++ Q+G +I
Sbjct: 211 VQIAHAY-GDSAGDAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQ 269
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G S + ++ S V + F A ++ LAEP L I
Sbjct: 270 GGFGSWSGALVSNLLAGVASGA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTI 325
Query: 281 SGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
SGQ A+F +GG+ S + + ++ ++GV L FTPTVL+ GRI L++ EVS
Sbjct: 326 SGQEATFLAGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385
Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
E +P R+A TTV++ G + + GL+KD+ + IP +
Sbjct: 386 ELSQTGVTLSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGV 445
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
++P+LGALFR++ F ++ TE+ TP LVKP+ D++ P D +S ++ F +
Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVFATGNM 505
Query: 449 NKIYGPKEASEVEGQNYKG 467
G ++A Q G
Sbjct: 506 EGRGGVRKAGAQPMQPANG 524
>gi|300021854|ref|YP_003754465.1| type II and III secretion system protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299523675|gb|ADJ22144.1| type II and III secretion system protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 550
Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats.
Identities = 177/537 (32%), Positives = 258/537 (48%), Gaps = 77/537 (14%)
Query: 11 MMSIFLFSSNPSVAKLPPIKE---------------ANAAVINISDVEIGKGKKISIGLN 55
+ + L S+ P+ A+ + V + K I IGL
Sbjct: 18 VFAAVLTSAAPTSAQSRAADRLSVRADRGDPEFSKNTQSIVRISESEGLPVRKSIKIGLG 77
Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
K ++++ P V+DV+ S+P D VV S ++L GK GQ+N + G+Q+ +++
Sbjct: 78 KSVLIEFPNGVRDVMASNPAVVDAVVLSSNRVFLLGKAPGQSNAFFFSNKGEQLALIELN 137
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
++++ LEM LRR I S I+VE ++ T +L G V++ DS RA ++ F+SQ N
Sbjct: 138 VDQEGDGLEMLLRRVIPGSEIKVETLNQTAILTGRVKSPSDSARASRIAAQFMSQMIANW 197
Query: 176 YAN--------------------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
+N K V+NLL + E+QV LKVT+AEV+R +LKQ+G
Sbjct: 198 ASNVSLTSSGSGQQNKAGEVKDADDVKSVINLLTVEAEEQVMLKVTVAEVKRTLLKQLGI 257
Query: 216 QHSITGSSSGPSKSFAA------------------------------------DFGGKFV 239
SS S + + G
Sbjct: 258 NLGGVLSSGSFSTTLLTENAFPISTAQGLGSLPTFGVGTAASAACAVGQICAFNPGPATG 317
Query: 240 SEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ G V G + + ++ + ALER I+TLAEP LTAISG+ A F +GG+ Y T
Sbjct: 318 AFGNSGLVSGWGNSRNNIQSAVRALERDGLIKTLAEPNLTAISGEPAEFLAGGEVPYVTG 377
Query: 299 SSS-TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
+ TG ++V +GV L FTP VL+ GRI L+I T VS+ V P + R+A
Sbjct: 378 VDTQTGVSAVAFKKFGVQLAFTPVVLTEGRISLKIDTSVSDISQYVAGN--PVFDTRQAK 435
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T VELPSGG++ LAGL+ QQ +G+P IPILG LFR+ F +E+E+ + TP+
Sbjct: 436 TVVELPSGGSLALAGLISTKTQQNIDGLPGAKDIPILGTLFRSRDFQNDESELVVIVTPY 495
Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
LV+PVA + LS P D D KA F +N+IYG E KG GFI +
Sbjct: 496 LVQPVARQQLSAPTDGLYPATDLKADFLGHLNRIYGKSE--VQPSGGLKGDYGFIVE 550
>gi|94309592|ref|YP_582802.1| type II and III secretion system protein [Cupriavidus metallidurans
CH34]
gi|93353444|gb|ABF07533.1| Flp pilus assembly protein secretin CpaC [Cupriavidus metallidurans
CH34]
Length = 620
Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats.
Identities = 115/447 (25%), Positives = 215/447 (48%), Gaps = 21/447 (4%)
Query: 19 SNPSVAKLPPIKE-ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
S+A +P A A I + + + K ++ +P V++ + +P
Sbjct: 60 MTISMAPVPAAPSIAADARGPNCSGAIRNESSVIVPIGKSQLIPLPEPVRNRTLGNPNVV 119
Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NI 136
+ SP+T+Y+ G++VG N+I+ G G +++++ D L+ +L + + I
Sbjct: 120 QATMVSPQTLYVLGRSVGTTNMIVQGRSGGC-SIINVVVNADSNGLQTSLAQLLPGESGI 178
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
RV +D +VL G V + Q + +A+++++ + + + + AN V+N++++ QV
Sbjct: 179 RVMTAADNLVLTGSVSSSQAALQAMDIAQAYANAAQGD-GANGKKGGVLNMMSVDTPQQV 237
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
L+V +AEV + +L Q+G +I G + ++ ++ + F
Sbjct: 238 MLEVKVAEVSKTLLNQLGSAVNIQGGFGSWTGGVISNL----LTGAAAGIFGSKANNKPF 293
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDY 312
+ A + + ++ LAEP L ISGQ ASF +GG+ S ++ ++
Sbjct: 294 NLAIDAQKNDSLVKVLAEPNLVTISGQEASFLAGGKIYIPVAQSNALGGASTITLQEEEF 353
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELP 363
GV L FTPTVL+ GRI L++ EVSE +P R+A TTV++
Sbjct: 354 GVGLKFTPTVLANGRIHLKVSPEVSELSPTGATVSGSTLTGQTILPLITTRRASTTVQMR 413
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
G + + GLL+D + + +P ++P+LG LFR+++F ++ TE+ TP LVKP+
Sbjct: 414 DGESFAIGGLLQDSARGSLKALPGAGEVPVLGTLFRSTQFQQDLTELVFIITPHLVKPMQ 473
Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNK 450
++ P D ++ D +F +
Sbjct: 474 TQNYPLPTDGFTTPDPLSLYFMGNMEG 500
>gi|260462607|ref|ZP_05810813.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
gi|259031513|gb|EEW32783.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
Length = 478
Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats.
Identities = 118/484 (24%), Positives = 213/484 (44%), Gaps = 33/484 (6%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+Q ++ M + L + A+ DV ++ + +++ + +QV
Sbjct: 1 MQGSWLRMGAAALSCLGALLLTSLAADAAD----RFIDVSNPSVHRVFLPMSQSVTIQVN 56
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
++ D++V D AD + RT+Y+ GK G V L D + + + I + D++ +
Sbjct: 57 ANLGDIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSTDKRSLGVIQIEVGVDVSDM 116
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+R+ S I + ++ V L G V+ + +++++ +
Sbjct: 117 AQAIRQVSPRSRIEIGSINGKVRLGGHVKDGATLEAIMQVAQQY------------GPDA 164
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG- 242
++N + + QV L+V + E +R+ + +G GSS+ + A G
Sbjct: 165 IINSVTVDDSQQVNLEVRVLEAKRNAGRDLGVSFRSRGSSATIFGTGIAATTPPGADPGT 224
Query: 243 ------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ + + ++ ALE +RTLA P LT +SG+ ASF +G
Sbjct: 225 LVTGLLSKTNPFASLITQIIDSNIKVDLIIEALEAKGVVRTLANPNLTTLSGEPASFNAG 284
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
GQ ++V + G + +GV L FTP VL+ +I + + EVS+ +AGD P
Sbjct: 285 GQVPIRSV-TKDGLIQIEYKQFGVNLQFTPIVLADDKIHISLAPEVSDLTGFTSAGD-PI 342
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ RK DT VEL G + + GLL +L+ +P L ++P++G LFRNS +EETE+
Sbjct: 343 FTNRKLDTVVELRDGQSFAVGGLLSSKTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETEL 402
Query: 411 FIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
+ TP +V+PV L+ P D +D + F ++ + G G
Sbjct: 403 VVIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQLE-VNKDMIRKYETGDGVTGPY 461
Query: 470 GFIY 473
G +
Sbjct: 462 GHML 465
>gi|78062906|ref|YP_372814.1| type II and III secretion system protein [Burkholderia sp. 383]
gi|77970791|gb|ABB12170.1| type II and III secretion system protein [Burkholderia sp. 383]
Length = 460
Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats.
Identities = 141/489 (28%), Positives = 226/489 (46%), Gaps = 45/489 (9%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M + R + +S + A+ +A AA +SI K +L
Sbjct: 1 MVRMVRWIACWCLACIVASGSAFAQGARAPDAGAA--------------LSIATGKGELL 46
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+P + V+DP AD+ V SPRT+++FGK G +I +G + + +L ++++ D
Sbjct: 47 SLPEPATAMFVADPAIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRKTVIVQVDT 106
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
A L+ L + V ++++ G V + D+ ++ +L
Sbjct: 107 ASLQGVLDSRFPQLKLSVSGAPGSLMVSGKVPSAADADAVMQSLTPYLHDK--------- 157
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAAD 233
+K++N L ++ QV L+V + EV R+I +Q+G S G + F
Sbjct: 158 -EKIVNRLTLSRPIQVNLRVRVTEVSRNITQQLGINWSSLGGAGNFVGGLFNGRTLFDPT 216
Query: 234 FGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G +S G FSV G R+S + VL AL++ I LAEP LTA+SG++ASF +GG
Sbjct: 217 NGLFNLSPTGAFSVLGGFRAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGETASFLAGG 276
Query: 292 QHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345
+ SSTGA +V +GV L FTPTVL+ RI L+++ EVSE +
Sbjct: 277 EIPIPVAQAGSSTGAITVEFKPFGVSLDFTPTVLADNRISLKVRPEVSEIDTNNSVTTGG 336
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P VR+ DTTVEL SG + + GLL+ IP L ++PI+G LF + F
Sbjct: 337 VKVPGLTVRRVDTTVELSSGQSFAIGGLLQSQTADTVSQIPGLGRLPIIGRLFSSKNFQD 396
Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVE-DDAKAFFFNRVNKIYGPKEASEVEGQN 464
+TE+ + TP++V+P L + D + D + + + +
Sbjct: 397 NKTEVVVIVTPYIVQPTGPGQLEQAIDTVARPSSDLEFAVQHNLGLDLLSGDT-----PR 451
Query: 465 YKGAIGFIY 473
GA GF+Y
Sbjct: 452 LVGAAGFVY 460
>gi|16127175|ref|NP_421739.1| pilus assembly protein CpaC [Caulobacter crescentus CB15]
gi|221235976|ref|YP_002518413.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus
NA1000]
gi|7208425|gb|AAF40192.1|AF229646_4 CpaC [Caulobacter crescentus CB15]
gi|13424571|gb|AAK24907.1| pilus assembly protein CpaC [Caulobacter crescentus CB15]
gi|220965149|gb|ACL96505.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus
NA1000]
Length = 560
Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats.
Identities = 142/502 (28%), Positives = 236/502 (47%), Gaps = 70/502 (13%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
A V I + + K I+++P +V+D+LV++P AD V+ R +Y+ G
Sbjct: 70 AEDQVARIVMTADQTAATLELAKGKSAIVELPSEVRDLLVTNPQIADAVLRDKRRIYIVG 129
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G + G+++L+L I + + + L L + + D+ I V + D+VVL G V
Sbjct: 130 LAEGTTDAAFFDTAGRRILSLSIRVSQPVDQLAAMLGKILPDAKITVSPIRDSVVLSGTV 189
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
RT +++ A ++ F+ +KV+N++++AG+DQV L+V I EV+R+++K
Sbjct: 190 RTASEAESAARIAAQFVGS----------PEKVLNMISVAGKDQVMLQVRIVEVQRNVIK 239
Query: 212 QIGFQHSI-------------TGSSSGPSKSFAADF------------------------ 234
Q+G + G + S
Sbjct: 240 QLGVDLNAVIGQLGETQYTFGMAPGYGVNGSLLGGVTGGYKMDTTKQPVMQTPCTGPGWT 299
Query: 235 ----------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
GG S G S + ++ A ER +RTLAEP L A+SG+S
Sbjct: 300 AGSLCPVVARGGGNSDTATIQSTAGDPGLNSAKGMIQAFERVGLVRTLAEPNLAAVSGES 359
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341
F GG+ T S ++G ++ YGV L +TP VLS GRI L++ TEVSE
Sbjct: 360 GKFLVGGEFPVPTGSDTSGKVTIEFKPYGVGLGYTPVVLSGGRISLKLSTEVSELSSLGA 419
Query: 342 ---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
G +P VR+ ++TVELPSGG+++LAGLL+ ++ + +P ++ +P
Sbjct: 420 FSMSTGTSSGSTNLTVPGLSVRRVESTVELPSGGSLMLAGLLQQTTKETIDSLPGMTSMP 479
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
ILG+LFR+ F +TE+ + TP+++ P ++L P D D R+NK+
Sbjct: 480 ILGSLFRSRDFLNNQTELVVIITPYIIDPTRPQNLQTPADGLQFASDMGTVLLGRLNKVV 539
Query: 453 GPKEASEVEGQNYKGAIGFIYK 474
A G+ Y+G +G++ +
Sbjct: 540 KAP-AGANAGRAYQGPVGYVIE 560
>gi|83312840|ref|YP_423104.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
magneticum AMB-1]
gi|82947681|dbj|BAE52545.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
magneticum AMB-1]
Length = 495
Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats.
Identities = 144/461 (31%), Positives = 245/461 (53%), Gaps = 24/461 (5%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
++ + + + + + K I L +P V++V++ + ADV+V +P
Sbjct: 46 AAPSPRPGTPQSLRGLSSAAAESMQVPVGKSIDLPLPGAVKEVVIGNSDIADVIVRTPHM 105
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTV 145
+++ G+ VGQ NV L+ G+ M +D+ + D ++ LR + + I VE V+D++
Sbjct: 106 VHITGRAVGQTNVFLMDRSGRVMRRIDLAVAIDSQAVKDALRAVLPEERAITVEAVADSL 165
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L G V+ ++ A ++ F++ G K++N++ + E QV L V +AE+
Sbjct: 166 YLSGSVKNDGAARDAKMVARRFVADDG----------KLVNMIRVVNEQQVLLHVKVAEI 215
Query: 206 RRDILKQIGFQH------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
+R +LK++GF S+ G++S S + ++ G S F V +
Sbjct: 216 QRTVLKELGFGLTANKSISLPGTASLSSFTTSSTVGLIDSSSTAIFGTATVTGLGALAAN 275
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
+ LE IRTL EP LTA+SG++A+ +GG+ VS++ G+ SV YGV+L FT
Sbjct: 276 FNILENQGLIRTLVEPNLTAVSGETATMLAGGELPIP-VSTTNGSISVEFKPYGVLLSFT 334
Query: 320 PTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
P VL PGR+ L++ TEVS +P+++VR+A +TVELPSGG+I++AGLL
Sbjct: 335 PVVLDPGRLSLKMSTEVSAIDTANKTAITTTISVPAFKVRRAGSTVELPSGGSIMIAGLL 394
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
++DI G+P L +P+LGALFR++ F R ETE+ + + ++++PV +LS P+D +
Sbjct: 395 QNDITANIAGLPGLMDLPVLGALFRSNAFQRNETELVVILSAYVIRPVDQPNLSTPNDGF 454
Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEV-EGQNYKGAIGFIYK 474
+ D K F R+ Y + E +G G I +
Sbjct: 455 APSSDLKRFLLGRLQDTYTTRGKGEPAAPPALQGPYGHIVQ 495
>gi|82703477|ref|YP_413043.1| type II and III secretion system protein [Nitrosospira multiformis
ATCC 25196]
gi|82411542|gb|ABB75651.1| type II and III secretion system protein [Nitrosospira multiformis
ATCC 25196]
Length = 574
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 130/503 (25%), Positives = 216/503 (42%), Gaps = 49/503 (9%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG-------KGKKISIGLNKVIIL 60
++ I L S A ++ + + + K +L
Sbjct: 41 ITVLLGITLGLSGELSAANQTAAGQAMGRPMVAAAKPAGPVEGLLAASDMDVTYGKSALL 100
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDILI 116
++P V + V +P ADV + SP +Y+ GK++G NVIL G Q +++ +
Sbjct: 101 RLPAPVTRISVGNPDVADVTLISPGEIYVLGKSIGTTNVILWTRGGLAGSSQTAVINVTV 160
Query: 117 ERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ----- 170
D A L+ LR + +I+V D++VL G V + RAV L++ ++
Sbjct: 161 ILDAAALQAKLRELMPGETDIKVTAAGDSLVLSGTVSDTLKADRAVALADAYVRAAAGGQ 220
Query: 171 --------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
+ S +V+NLL + QV L+V +AE+ R +
Sbjct: 221 GGQRGGKQGGDASGGQGGGDEPKGAGQGLGSVQVVNLLQVGSNQQVMLEVKVAEINRKVA 280
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
+++GF +G + + G G ++ A ++
Sbjct: 281 ERLGFDFQRAARKAGSAWTQI--MTGIIGGAPGMLFQSRGTPEIGDAFLIDAEKKDELFH 338
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
LAEP + AISGQ ASF GG+ + + T + + +GV L FTPTVL GRI L
Sbjct: 339 ILAEPNIVAISGQEASFLVGGEVMIPIPQYAGVIT-LQSRQFGVGLRFTPTVLEEGRINL 397
Query: 331 RIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ EV+E V +P++ R+ TTV+L G ++ + GLL+D+I++
Sbjct: 398 VVSPEVTELVKFDTIATTGLGGVLAVPTFTTRRVSTTVQLRDGQSLAIGGLLQDNIKETI 457
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
+ P+L +IPILGALFR+S F +++TE+ + TP L+KP+ D + P D + D
Sbjct: 458 KRFPVLGEIPILGALFRSSDFQKDKTELMVVVTPRLIKPLQP-DYALPTDAFVQPDRPDF 516
Query: 443 FFFNRVNKIYGPKEASEVEGQNY 465
F R+ + Y
Sbjct: 517 LFDGRMEGSPTGLLPKGMPASEY 539
>gi|46201037|ref|ZP_00207939.1| COG4964: Flp pilus assembly protein, secretin CpaC
[Magnetospirillum magnetotacticum MS-1]
Length = 480
Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats.
Identities = 146/468 (31%), Positives = 238/468 (50%), Gaps = 26/468 (5%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
A P + A + + + + K + L +P V++V++ + ADV+
Sbjct: 24 LGAPSGPGQAQRAGTPRSLLGATAASAESMQVPVGKSVDLTLPGAVREVVIGNSDIADVM 83
Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVE 139
V SP +++ G+ VGQ NV L+ G+ M +D+ + D + LR + D I VE
Sbjct: 84 VRSPNLVHITGRAVGQTNVFLVDRAGRVMRRIDLNVSIDSQAVRDALRAVLPDERAINVE 143
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
V+D++ L G V+ ++ A L+ F+++ K++NLL + E QV L
Sbjct: 144 AVADSLYLSGSVKNDAAARDAKMLARRFVAEDA----------KLVNLLRVVNEQQVLLH 193
Query: 200 VTIAEVRRDILKQIGFQHSIT-------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
V +AE++R +LK++GF + S G ++ G S F +
Sbjct: 194 VKVAEIQRTVLKELGFGLTANKGIPLIGSSVLGSGSKTSSTVGLIDSSSTAIFGTATITG 253
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+ L+ LE IRTL EP LTA+SG++A+ +GG+ + GA SV Y
Sbjct: 254 IGALAANLNILENQGLIRTLVEPNLTAVSGETATMLAGGELPIPIS-QTNGAVSVEFKPY 312
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGT 367
GV+L FTPTVL PGR+ L++ TEVS ++ +P+++VR+A +TVELPSGG+
Sbjct: 313 GVLLSFTPTVLDPGRLSLKMSTEVSAIDNNNKTAISSSISVPAFKVRRAGSTVELPSGGS 372
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
I++AGLL++DI G+P L +P+LG LFR++ F R ETE+ + + ++V+PV L
Sbjct: 373 IMIAGLLQNDITSNITGLPGLMDLPVLGLLFRSNAFQRNETELVVILSAYVVRPVEQPVL 432
Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-GQNYKGAIGFIYK 474
P+D ++ D K F R+ Y + + +G G I +
Sbjct: 433 GTPNDGFAPSSDLKRFLLGRLQDTYTKRSRELPATPPSLQGPYGHIVQ 480
>gi|114799376|ref|YP_761691.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444]
gi|114739550|gb|ABI77675.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444]
Length = 535
Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats.
Identities = 148/541 (27%), Positives = 250/541 (46%), Gaps = 77/541 (14%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
RT + + + P+ L + +++++G++K +I+ +
Sbjct: 1 MRTIKALTCAAIVAILPAPFALAQTIPNGMGTSITKPGDQAVSRRVTLGVDKSMIVDLEA 60
Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
DV++S+P AD VV + + + G GQ N ++ G +L+L+I++E D+A LE
Sbjct: 61 PAADVVISNPEIADAVVQTAQRIIFRGIKFGQTNALIFDRAGNTLLDLNIMVETDLAALE 120
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
T+ R I D+ +++E + +V+L GMV + S + +L + F +S ++
Sbjct: 121 ETISRHIPDARVKIESFNGSVILTGMVDNLSQSDQVSQLVKAFFPESAGGGEL-----QI 175
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------- 219
+N+LN+ DQV L+V I E++R ++KQ+G S
Sbjct: 176 VNMLNVNAADQVMLEVRIVEMQRSVIKQLGINLSGATSFGELANQTLQQVFQGGLPLFFD 235
Query: 220 ---------------------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
S+ + G E G +
Sbjct: 236 PDSGEYNTTGQGTAVEMLQPAGPSSNTISGSASSGFNVQGQALGGISLETGYTNYNNGRL 295
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+ S + A+ER +RTLAEP + A+SG+SA F +GG+ + G +V Y
Sbjct: 296 QSSIGAAIDAMERVGIVRTLAEPNIVAMSGESAKFLAGGEFPVPVGQNQNGQITVEFKPY 355
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-------------------VNAGDMPSYRV 353
GV L FTP VLS GRI L++ TEVSE + +P+ V
Sbjct: 356 GVGLAFTPVVLSEGRISLKVSTEVSELTSQGAFQGAAQTITDGDGNTTIIQGATLPALSV 415
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R+A++ VELPSGG++++AGL+ +Q + +P L K+PILG+LF++ F EETE+ +
Sbjct: 416 RRAESVVELPSGGSMMMAGLISVKDRQTIDQLPGLKKLPILGSLFQSRDFLSEETELVVM 475
Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
TP+LV + P D Y+ DAK FF ++N+ YG A ++ +Y+ +GF+
Sbjct: 476 VTPYLVGATNKASMVTPADGYANASDAKTIFFGKLNETYGRDGAP-IKPDDYRAPVGFME 534
Query: 474 K 474
+
Sbjct: 535 E 535
>gi|325525578|gb|EGD03368.1| flp type pilus assembly protein [Burkholderia sp. TJI49]
Length = 545
Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats.
Identities = 122/433 (28%), Positives = 214/433 (49%), Gaps = 18/433 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+
Sbjct: 91 GAVRESSSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 150
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +L++ + + +I V + T+VL G V Q +Q+A
Sbjct: 151 QGRSGACR-VIDVAVGADAGGLQTSLQQLMPNERDIHVSTAAGTIVLAGSVSNSQAAQQA 209
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
V ++ + +G V+N+L++ QV L+V +AEV + ++ Q+G +I
Sbjct: 210 VAIARAYGDSAGSGDAGGKPGSGVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQ 269
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G S + ++ S +R F+ A ++ LAEP L I
Sbjct: 270 GGFGSWSGALVSNLLAGVASG----IAVSKSNRRPFQIAADAQNTDNLVKILAEPNLVTI 325
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
SGQ A+F +GG+ SS G + ++GV L FTPTVL+ GRI L++ EVS
Sbjct: 326 SGQEATFLAGGKIFIPVPQSSGGNATTITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385
Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
E A +P R+A TTV++ G + + GL+KD++ + IP +
Sbjct: 386 ELSSTGVTLSATNVSGASILPLITTRRASTTVQMNDGESFAIGGLIKDNVTGALKAIPGV 445
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
++P+LGALFR++ F ++ TE+ TP LVKP+ + D+ P D +S ++A + +
Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPMQIADVPLPTDSFSKPNEADVYATGNM 505
Query: 449 NKIYGPKEASEVE 461
G +
Sbjct: 506 EGRRGVRRQGAEA 518
>gi|167589424|ref|ZP_02381812.1| type II and III secretion system protein [Burkholderia ubonensis
Bu]
Length = 460
Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats.
Identities = 135/488 (27%), Positives = 226/488 (46%), Gaps = 43/488 (8%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M + R + + + A+ + +A A +++ K +L
Sbjct: 1 MVRMVRWIALWCMACVAAPGVAFAQRASVPDAGAP--------------LTLAAGKGDLL 46
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+P + V+DP+ AD+ V SPRT+++FGK G +I +G + + +L ++++ D
Sbjct: 47 SLPEPAATMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQADT 106
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
L+ L ++V ++++ G V + D+ ++ +L
Sbjct: 107 PSLQRVLDSRFPQWQLKVSGAPGSLMVSGKVPSGADADAVMQSLAPYLQDK--------- 157
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAAD 233
+K++N L ++ QV L+V + EV R+I +Q+G S G S F
Sbjct: 158 -EKLVNRLTLSRPIQVNLRVRVTEVSRNITQQLGINWSGLGGSGNFIGGLFNGRTLFDPT 216
Query: 234 FGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
+S G FSV G R+S + VL AL++ I LAEP LTA+SG++ASF +GG
Sbjct: 217 TSLFNLSPTGAFSVLGGFRAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGETASFLAGG 276
Query: 292 QHLYKTVSS--STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347
+ S +TGA +V +GV L FTPTVL+ RI L+++ EVSE +
Sbjct: 277 EIPIPVAQSGTTTGAITVEFKPFGVSLDFTPTVLAENRISLKVRPEVSEIDPTNSVTTGG 336
Query: 348 --MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P+ VR+ +TTVEL SG + + GLL+ + IP L ++P+LG LF + F
Sbjct: 337 VKVPALSVRRVETTVELSSGQSFAIGGLLQSQTSDVVSQIPGLGRLPVLGRLFSSKNFQD 396
Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
+TE+ + TP++V+P L + D + F R + +
Sbjct: 397 NKTEVVVIVTPYIVQPAGPGQLEQAIDTVARPSSDLEFAVQRNLGLDLLSG----DTPRL 452
Query: 466 KGAIGFIY 473
GA GF+Y
Sbjct: 453 VGAAGFVY 460
>gi|12620550|gb|AAG60826.1|AF322012_131 RhcC2 [Bradyrhizobium japonicum]
Length = 484
Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats.
Identities = 127/476 (26%), Positives = 211/476 (44%), Gaps = 21/476 (4%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
L R + + L P A ++ + + ++I ++ + +
Sbjct: 25 LNRLCYLLCGFALL--FPLAASAETKRDGKGEMPRAAPG--STTGTLNITSSQGKTVHLS 80
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+ V+DP AD S T+++FGK G+ ++ + +G+ + L I++ + + L
Sbjct: 81 APAATIFVADPAIADYQAPSSSTIFVFGKKSGRTSLFALNENGEALAELRIVVTQPLEDL 140
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
L+ + D I+V +L G+ + A +++E F+ +
Sbjct: 141 RAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVEAARKVTEQFVG----------AGAP 190
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
V+N + +AG QV L V +AEV R +K + + +G + G + G GG
Sbjct: 191 VVNKIQVAGSLQVNLSVRVAEVSRTAVKDLNINFTASGPN-GAFLATGKPGGSGRAGGGG 249
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ + VL AL LAEP LTA+SG++ASF +GG+ V
Sbjct: 250 TIGIGFSTGNINLSAVLDALASEHLASILAEPNLTAMSGEAASFLAGGEFPIP-VMQDNR 308
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTT 359
SV +GV L F PTVLS +I +R++ EVSE +N +P+ R+A T
Sbjct: 309 QVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSELSTEGEVKINGMAVPALSTRRASTV 368
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VEL SG + + GL++ + P L +PILGALFR+S F + ETE+ I TP++V
Sbjct: 369 VELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPILGALFRSSSFQKRETELVIVVTPYIV 428
Query: 420 KP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
+P +S P + + DA N V + ++A G GFI +
Sbjct: 429 RPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQGRDAPRASAPGLTGNAGFIIE 484
>gi|148976662|ref|ZP_01813349.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium
SWAT-3]
gi|145964013|gb|EDK29271.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium
SWAT-3]
Length = 456
Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats.
Identities = 111/438 (25%), Positives = 196/438 (44%), Gaps = 27/438 (6%)
Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
+ +K + + V + DP D+V+ ++L GK +G N++ G+ + +
Sbjct: 1 MPHHKSTHVVLSGKASKVSLGDPEVLDIVILKSNEVFLIGKKLGATNLMAWDARGQLIES 60
Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
++I + D+ L+ L F+ D I V + ++L G + Q A+ ++ET+ +
Sbjct: 61 INIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQISNQQKMNVAMRIAETYAAGQ 120
Query: 172 GRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
++ S S++ V+NL++I G QV L+VT+AEV+R ++++ +S
Sbjct: 121 AADETKESGSEQAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQTSGSN 180
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPT 276
A + F + D F L ++ + LAEP
Sbjct: 181 FSWGGASVPAGVLGATPIFDIPTSTDYGILGSFIDSNTLFTFALDVSKQNGVAKVLAEPN 240
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
LTA+SG A F +GG+ ++ +YGV L F PTVLS +I L + +V
Sbjct: 241 LTALSGSKAEFLAGGEFPIPVP--DDDGITIEYKEYGVGLKFIPTVLSDQKINLNLAVDV 298
Query: 337 S----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
S +P +P R A +T+EL G TI +AGLL ++++ + +
Sbjct: 299 SEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDISNKML 358
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ +PILG LF + + ETE+ I TP L KPV ++ P D + +D + +
Sbjct: 359 GIGDVPILGQLFNSQEYVSGETELVILVTPRLAKPVDRSKVTLPTDAFVDPNDLEYYLLG 418
Query: 447 RVNKIYGPKEASEVEGQN 464
R I P ++ + +
Sbjct: 419 RSAYIAEPSDSEDNSSAS 436
>gi|115361033|ref|YP_778170.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
gi|115286361|gb|ABI91836.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
Length = 657
Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats.
Identities = 119/434 (27%), Positives = 211/434 (48%), Gaps = 18/434 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ +++ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+
Sbjct: 92 GAVRDATSVTVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 151
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +L++ + +I V + T+VL G V Q +Q+A
Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQA 210
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
V+++ + +G V+N+L + QV L+V +AEV + ++ Q+G +I
Sbjct: 211 VQIAHAYSDSAGEGAGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGTAFNIQ 270
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G S + ++ S G + + F A ++ LAEP L I
Sbjct: 271 GGFGSWSGALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTI 326
Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
SGQ A+F +GG+ SS T ++ ++GV L FTPTVL+ GRI L++ EVS
Sbjct: 327 SGQEATFLAGGKIFIPVPQSSGTGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 386
Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
E +P R+A TTV++ G + + GL+KD+ + IP +
Sbjct: 387 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGSLKAIPGV 446
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D +S + + +
Sbjct: 447 GEVPVLGALFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFSKPSEIDVYATGNM 506
Query: 449 NKIYGPKEASEVEG 462
G ++A+
Sbjct: 507 EGRKGVRKATMQPS 520
>gi|170750189|ref|YP_001756449.1| type II and III secretion system protein [Methylobacterium
radiotolerans JCM 2831]
gi|170656711|gb|ACB25766.1| type II and III secretion system protein [Methylobacterium
radiotolerans JCM 2831]
Length = 546
Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats.
Identities = 148/497 (29%), Positives = 244/497 (49%), Gaps = 55/497 (11%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
A V+ + E +++ + + +I+ +P D ++V V++P A+ VV S R +++ G
Sbjct: 50 PAPVLTVGAAEANTTRRVELTAGRSVIVDLPRDAKEVFVANPAVANAVVRSTRKVFVIGM 109
Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIA--HLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G ++ ++ +G+Q+ LD+ + RD+ L L + I V +V+L G
Sbjct: 110 ADGATSIFIMDAEGRQIAALDVTVARDLNLGTLRELLSQSIPGGRFDVRSSGASVLLSGA 169
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANS----------SSKKVMNLLNIAGEDQVTLKV 200
V + D+Q+A++++ F+ G + S V+N L I +DQV L+V
Sbjct: 170 VNSSSDAQQAIDIANAFVGLGGGGAAGPAGAASGGVAAGSRGAVINNLTIRNKDQVMLRV 229
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------------- 241
T+ EV R++LKQ G + S+ P + +
Sbjct: 230 TVVEVSRNVLKQFGINMAGNWSALNPVGNLGQTVVNGGTAAATQVPAYLPNVITNNLPFP 289
Query: 242 -------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
G FS + L A E+A R LAEPTLTAISG++A F +GG+
Sbjct: 290 INTNTPSGNLIQASVQGGGFSLQATLKAFEQAGVSRILAEPTLTAISGEAAKFLAGGEFA 349
Query: 295 YKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------G 342
+ + +T YGV L FTPTVL+ RI +R+ T+V+E G
Sbjct: 350 VPASATCAVGGVCSPGITYKPYGVALSFTPTVLADNRISIRVATDVTEIDTQQSFSYVIG 409
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ +P RVR+++TTVELPSGG ++ AGL++ +Q G+P L +PILGALFR+
Sbjct: 410 NTSVAVPGTRVRRSETTVELPSGGVMMTAGLIQQFNKQAIAGLPGLINLPILGALFRSRD 469
Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE- 461
+ R+ETE+ I TP++ +P+ + +SRPDD++ D + ++N+IYG
Sbjct: 470 YQRQETELMIMCTPYIARPMEPKQVSRPDDNFVDASDGQTVLLGQINRIYGKVAPPGATA 529
Query: 462 ----GQNYKGAIGFIYK 474
G+ Y+G +GFI +
Sbjct: 530 AAPLGRAYRGRVGFIVE 546
>gi|257141104|ref|ZP_05589366.1| type II and III secretion system protein [Burkholderia
thailandensis E264]
Length = 826
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 124/433 (28%), Positives = 216/433 (49%), Gaps = 21/433 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 94 GAMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212
Query: 161 VELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
V +++ + ++ V+N+L + QV L+V +AEV + ++ Q+G
Sbjct: 213 VAIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAV 272
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
++ G + + ++ G+ ++ + A ++ LAEP L
Sbjct: 273 NLQGGFGSWTGALVTSL----LTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRL 328
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334
ISGQ A+F +GG+ SS TS ++GV L FTPTVLS GRI L++
Sbjct: 329 VTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAP 388
Query: 335 EVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
EVSE +P R+A TTV++ G T + GL+KD+ Q + +
Sbjct: 389 EVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKAL 448
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
P + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A +
Sbjct: 449 PGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYAT 508
Query: 446 NRVNKIYGPKEAS 458
+ G ++
Sbjct: 509 GNMEGRGGLRQHG 521
>gi|220918104|ref|YP_002493408.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219955958|gb|ACL66342.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 477
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 131/491 (26%), Positives = 224/491 (45%), Gaps = 44/491 (8%)
Query: 11 MMSIFLFSSNPSVAKLPPIK-EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
M++ L + LPP++ A A D +G G ++++ + +L + ++ V
Sbjct: 1 MIAHTLLALALFATPLPPVELAAGALPPLRIDRSVGAGSELALEAGQNRLLIISEEIGRV 60
Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
V+DP+ AD+ V + + L K+ G ++ L + + + +++ R++ L ++
Sbjct: 61 AVADPSVADLKVVTTNQLLLTAKSSGTTDLTLWNRSNEPL-VIALVVTRNLEPLRKQVKD 119
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
+ + + V+L G V ++ +R VE+++ +K+V NL+
Sbjct: 120 LFPGEKVTITGAGELVILSGEVSDVRIPERLVEVAK-------------LHAKQVANLVK 166
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQH-----------SITGSSSGPSKSFAADFGGKF 238
++G QV L+V AEV R L+QIG +TG P+ G
Sbjct: 167 VSGNQQVQLEVRFAEVSRSGLRQIGVNLFHQSSNGEVVTGMTGRGIIPTDLGVPGTGTAG 226
Query: 239 VS---------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G V + F F +L LE+ +TLAEPTL +SGQ A F +
Sbjct: 227 APPPIFRPQFNNGFSMFVSSLSGDFPFSAMLSLLEQNGLSKTLAEPTLVTLSGQQARFVA 286
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNA 345
GG+ S G T V +G++L FTPTV++ I L ++ EVS+ +
Sbjct: 287 GGELPIPLG-GSFGQTQVEWKKFGILLDFTPTVIAGDTIHLDLKAEVSDIDQSLAITIGG 345
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P R+++TT+ L G + +AGLL D ++ E +PLL IPILGALFR++++ R
Sbjct: 346 TTIPGLTSRQSETTIRLGDGQSFAIAGLLSDRVRSQIERVPLLGSIPILGALFRSTQYKR 405
Query: 406 EETEIFIAATPFLVKPVAMRDL-SRPDDH-YSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
EE+E+ + T L +PVA L P + + D + F + ++ Q
Sbjct: 406 EESELLVVVTARLARPVAPHQLPPLPTERELNHPGDIELFLLGWDDGGKQVPRSAPSTRQ 465
Query: 464 NY--KGAIGFI 472
GA GF+
Sbjct: 466 AGGPSGARGFV 476
>gi|261252087|ref|ZP_05944660.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
gi|260935478|gb|EEX91467.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
Length = 480
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 117/449 (26%), Positives = 198/449 (44%), Gaps = 31/449 (6%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
IS GK +++ +K + + + V + DP D+V+ ++L GK +G N
Sbjct: 10 ISFAATQSGKIVTVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDEVFLIGKKLGSTN 69
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
++ G+ + +++I + D+ L+ L F+ D I+V ++L G V +
Sbjct: 70 LMAWDSRGQLIESINIEVTHDLNSLKAKLFEFLPDEEIKVHSAQHRLILSGQVSSQSVMN 129
Query: 159 RAVELSETFLSQSGRNQY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
A+ ++ET+ + ++ +S V+NLL I G QV L+VT+AEV+R ++++
Sbjct: 130 IALRVAETYSAGKEADKGKSSLSNQVNSTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKF 189
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG--------------DFSVKGVLDRFSFETV 259
+S G GG + F
Sbjct: 190 DANFHFFQTSGGEFSWGGTSAGGVIDDVNNVIGPIFNAPGVESTGLLGTFIDSNTLFTFA 249
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
L ++ + LAEP LTA+SG A F +GG+ S ++ +YGV L F
Sbjct: 250 LDIAKQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVPSEDG--ITIEYKEYGVGLKFI 307
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIV 369
PTVLS +I L + +VSE +P R A +T+EL G TI
Sbjct: 308 PTVLSDKKINLNLAVDVSELATSTTLTLNPGATNGTYVIPPITRRSASSTLELADGQTIG 367
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
+AGLL ++++ + E +P S IP+LG +F + + ETE+ I TP L KP+ R ++
Sbjct: 368 IAGLLSENVRDVVEEMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRRRITL 427
Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
P + + +D + + R I E
Sbjct: 428 PTESFVEPNDFEYYLLGRGAYIAPASEQK 456
>gi|254229332|ref|ZP_04922749.1| putative phospholipid-binding domain family [Vibrio sp. Ex25]
gi|262393417|ref|YP_003285271.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio sp. Ex25]
gi|151938140|gb|EDN56981.1| putative phospholipid-binding domain family [Vibrio sp. Ex25]
gi|262337011|gb|ACY50806.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio sp. Ex25]
Length = 487
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 121/437 (27%), Positives = 207/437 (47%), Gaps = 24/437 (5%)
Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
++++ + GK +++ ++ L + + V + DP D++V ++L GK +G
Sbjct: 16 LSVNAATVQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGT 75
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
NV + G+ + ++ + D+ L+ L +F+ D NI V + VVL G+V + Q+
Sbjct: 76 TNVSVWDRRGRLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQN 135
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
AV+++ETF ++ +SS V+NLL+I G QVTL+VT+AEV+R ++++
Sbjct: 136 MDTAVKIAETFALGEAADEEDDSSKDDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRRF 195
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALE 264
S + GG F + F L +
Sbjct: 196 DSNFHFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ + LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS
Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNEDG--ITIDYKEYGVQLDFVPFILS 313
Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
RI L++ VSE +P R A TT+EL G TI +AGLL
Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
++ + + +GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D +
Sbjct: 374 SENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGF 433
Query: 435 SVEDDAKAFFFNRVNKI 451
+D + + + ++
Sbjct: 434 VAPNDVEFYLLGKGAEL 450
>gi|269966892|ref|ZP_06180965.1| Flp pilus assembly protein [Vibrio alginolyticus 40B]
gi|269828559|gb|EEZ82820.1| Flp pilus assembly protein [Vibrio alginolyticus 40B]
Length = 487
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 121/437 (27%), Positives = 205/437 (46%), Gaps = 24/437 (5%)
Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
++++ GK +++ ++ L + + V + DP D++V ++L GK +G
Sbjct: 16 LSVNAATAQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGT 75
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
NV + G+ + ++ + D+ L+ L +F+ D NI V + VVL G+V + Q+
Sbjct: 76 TNVSVWDRRGRLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQN 135
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
AV+++ETF ++ +SS V+NLL+I G QVTL+VT+AEV+R ++++
Sbjct: 136 MDTAVKIAETFALGEAADEEDDSSKDDESMVINLLSIGGAQQVTLEVTVAEVQRTLVRRF 195
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALE 264
S + GG F + F L +
Sbjct: 196 DSNFHFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ + LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS
Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNEDG--ITIDYKEYGVQLDFVPFILS 313
Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
RI L++ VSE +P R A TT+EL G TI +AGLL
Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
++ + + GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D +
Sbjct: 374 SENARNVANGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGF 433
Query: 435 SVEDDAKAFFFNRVNKI 451
+D + + + ++
Sbjct: 434 VAPNDVEFYLLGKGAEL 450
>gi|83859357|ref|ZP_00952878.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633]
gi|83852804|gb|EAP90657.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633]
Length = 529
Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats.
Identities = 150/540 (27%), Positives = 258/540 (47%), Gaps = 77/540 (14%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK---GKKISIGLNKV 57
M +T + + P+ A+L + + + E G + + + L +
Sbjct: 1 MARFSQTLCAVALMAAACVCPAEAQLSGGRTEANNTLQVHIREPGAGPASESLQLPLGQA 60
Query: 58 IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
++ +P D DV++++ A VV + R ++ G+ VG+ N+ DG +L+L++ +E
Sbjct: 61 AVIHLPEDAADVVIANDEVASAVVRTTRRAFVMGQAVGRTNIFFFNADGGLILDLNVRVE 120
Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
RDIA L+ L RF+ + I+ E ++ +VL G V + + A+++++ ++
Sbjct: 121 RDIAALQDALDRFVPEGRIQAESMNANIVLSGQVPSAAAADTALQVAQRWV--------- 171
Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------ 219
+ ++V++ L + G DQVTL+V I E+ R +++Q+G S
Sbjct: 172 -DTPEQVVSFLTVEGRDQVTLQVRIVEMERTLVRQLGVNLSGEQAFGEFTPTVRTAATND 230
Query: 220 -----------------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--RF 254
+ G S +F G + V +
Sbjct: 231 RGDPLFDQNGAPIYEVYQQGRFQNSAGWGTSNAFGVAGAALGGLTGTLGTQNLVDGVLQS 290
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
S L+ALER +RTLAEP +TAISG+ A F +GG+ G ++ +GV
Sbjct: 291 SISATLNALERVGLVRTLAEPNITAISGEPAQFLAGGEFPVPVGRDRDGNVTIEFKPFGV 350
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE--------------------PVIGVNAGDMPSYRVR 354
L FTP VLS GRI LR+ TEVSE V +P+ V
Sbjct: 351 GLGFTPVVLSEGRISLRVSTEVSELSNEGAISLNSQVITDDQGNVTGTVQGVTIPALSVN 410
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+A+TTVELPSGG++V+AGL++++ +Q + +P + ++P+LG+LFR+ F ETE+ +
Sbjct: 411 RAETTVELPSGGSMVIAGLIREETRQAMDSVPGIERMPVLGSLFRSRDFANNETELVVVV 470
Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
TP+LV P+ D+ P + ++V A F R+N++Y A +VE + + G IGF+ +
Sbjct: 471 TPYLVDPLNPNDVESPAEGFAVSSLAAGAFLGRLNRVYAAPGA-QVENRGWSGPIGFVLE 529
>gi|13475417|ref|NP_106981.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
gi|14026169|dbj|BAB52767.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
Length = 481
Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 119/483 (24%), Positives = 207/483 (42%), Gaps = 35/483 (7%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
F+ M+ S ++ + +A I++S+ + ++ + +++ + + V +
Sbjct: 4 FWVRMAAVALSCFATLPTWSLVADAADRFIDVSNPSV---HRVFLPMSQSVTIAVNATLG 60
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
D++V D AD + RT+Y+ GK G V L + + + + I + D++ + +
Sbjct: 61 DIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSPEKRSLGVIQIEVGVDVSDMAQAI 120
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
R+ S I V V+ V L G V+ +E+++ + ++N
Sbjct: 121 RQVAPRSRIEVASVNGRVRLGGHVKDGVTMAAILEVAKQY------------GPDDIINS 168
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----------------SKSFA 231
+ I QV L+V I E +R+ + +G S S
Sbjct: 169 VTIDDSQQVNLEVRILEAKRNAGRDLGVSIRSNNSRSTTIVGTGIAAVDKDNVVLGTGGF 228
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
+ G + + + + + ALE A+RTLA P LT +SG+ ASF +GG
Sbjct: 229 LSDLLSTSTPFGALLTRVIDNNIKVDLYIEALEAKGAVRTLANPNLTTLSGEQASFNAGG 288
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
+ G S+ +GV L FTP VL G+I + + EVS+ AGD P +
Sbjct: 289 EVP-IRTLDKNGEISIVYKQFGVNLLFTPVVLDDGKIHMNLAPEVSDLNGFTTAGD-PIF 346
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
RK T VEL G + + GLL +L+ +P L ++P++G LFRNS +EETE+
Sbjct: 347 TNRKLSTVVELRDGQSFAVGGLLSSRTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETELV 406
Query: 412 IAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
+ TP +V+PV L+ P D +D + F ++ + G G G
Sbjct: 407 VIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQLE-VNKDMIRRYETGDGVTGPYG 465
Query: 471 FIY 473
+
Sbjct: 466 HML 468
>gi|172062959|ref|YP_001810610.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
gi|171995476|gb|ACB66394.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
Length = 460
Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 43/488 (8%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M + R + + ++A+ +A A +SI K +L
Sbjct: 1 MVRMVRWIAVWCLACIVAPGVALAQRAHAADAGAP--------------LSIATGKGEML 46
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ + V+DP+ AD+ V SPRT+++FGK G +I +G + + +L ++++ D
Sbjct: 47 SLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQVDT 106
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
A L+ L + V ++++ G V + D+ ++ +L+
Sbjct: 107 ASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTPYLNDK--------- 157
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV- 239
++++N L ++ QV L+V + EV R++ +Q+G S G++
Sbjct: 158 -ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLGINWSSLGAAGNFIGGLFNGRTLMDPT 216
Query: 240 ------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
S G +SV G R+S + VL AL++ I LAEP LTA+SGQ+ASF +GG
Sbjct: 217 TKLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGQTASFLAGG 276
Query: 292 QHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345
+ ++TGA +V +GV L FTPTVL+ RI L+++ EVSE +
Sbjct: 277 EIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRISLKVRPEVSEVDANNSVTTGG 336
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P VR+ +TTVEL SG + + GLL+ IP L ++PI+G LF + F
Sbjct: 337 VTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTANTVSQIPGLGRLPIIGRLFSSKNFQD 396
Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
+TE+ + TP++V+P L + D + F R + +
Sbjct: 397 NKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSDLEFAVQRNLGLDLMSGETPRP---- 452
Query: 466 KGAIGFIY 473
GA GF+Y
Sbjct: 453 VGAAGFVY 460
>gi|167648152|ref|YP_001685815.1| type II and III secretion system protein [Caulobacter sp. K31]
gi|167350582|gb|ABZ73317.1| type II and III secretion system protein [Caulobacter sp. K31]
Length = 545
Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats.
Identities = 150/517 (29%), Positives = 246/517 (47%), Gaps = 74/517 (14%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
P + P + V+ I G + +++ K I+++PVDV+D+LV++P AD
Sbjct: 41 APRIIDTPTLAPPADQVLRIDLTASG-AQSLTLARGKSAIVELPVDVRDMLVTNPAVADA 99
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V+ PR +Y+ G G + + G+++L+L I +++D + L+ TLRR + +NI V+
Sbjct: 100 VLRGPRRIYVLGMGQGVTDAVFFDAAGRKILSLAIRVDQDSSALQDTLRRVLPAANIEVQ 159
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+ D+V+L GMV + +S A +++ F+ + V+N+L IAG+DQV LK
Sbjct: 160 SIRDSVILTGMVANVGESTMASQIAARFVDK----------PDNVLNMLTIAGKDQVMLK 209
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------------------ 235
V I EV+R+I+KQ+G S G ++
Sbjct: 210 VRIVEVQRNIIKQLGVDSSAVLGQLGETQYAFGLSPSYGINGKLLGGLTGGYKADTTKQP 269
Query: 236 ----------------------GKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIR 270
S G ++ ++ A ER +R
Sbjct: 270 TLQVPCNAALPDGAKCLQIVRDNSVYSNGDTATITDTAGSAGLNSAKGMIQAFERVGLVR 329
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
TLAEP LT +SG++ F GG+ +TG ++ YGV L +TP VLS GRI L
Sbjct: 330 TLAEPNLTVVSGEAGKFLVGGEFPVPVGQDATGKVTIEFKPYGVGLGYTPIVLSGGRISL 389
Query: 331 RIQTEVSEPVI-------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
++ TEVSE + +P VR+A+TTVELPSGG++++AGLL+
Sbjct: 390 KLSTEVSELSSLGAFTLTTSTGTSTSSNLTVPGLTVRRAETTVELPSGGSLMIAGLLQQQ 449
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+Q + +P ++ +PILGALFR+ + ETE+ + TP++V P ++L P D
Sbjct: 450 TRQNIDALPGMTSLPILGALFRSRDYLNGETELVVIITPYIVDPTKPQNLQTPADGLQTA 509
Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
D R+NK+ G+ Y+G +G++ +
Sbjct: 510 SDMSTALLGRLNKVVKAP-VGANSGRAYQGPVGYVIE 545
>gi|170703887|ref|ZP_02894570.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
gi|170131202|gb|EDS99846.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
Length = 460
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 43/488 (8%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M + R + + ++A+ +A A +SI K +L
Sbjct: 1 MVRMVRWIAFWCLACIVAPGVALAQRAHAADAGAP--------------LSIATGKGEML 46
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ + V+DP+ AD+ V SPRT+++FGK G +I +G + + +L ++++ D
Sbjct: 47 SLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQVDT 106
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
A L+ L + V ++++ G V + D+ ++ +L+
Sbjct: 107 ASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTPYLNDK--------- 157
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV- 239
++++N L ++ QV L+V + EV R++ +Q+G S G++
Sbjct: 158 -ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLGINWSSLGAAGNFIGGLFNGRTLMDPT 216
Query: 240 ------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
S G +SV G R+S + VL AL++ I LAEP LTA+SGQ+ASF +GG
Sbjct: 217 TRLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGQTASFLAGG 276
Query: 292 QHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345
+ ++TGA +V +GV L FTPTVL+ RI L+++ EVSE +
Sbjct: 277 EIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRISLKVRPEVSEVDANNSVTTGG 336
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P VR+ +TTVEL SG + + GLL+ IP L ++PI+G LF + F
Sbjct: 337 VTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTANTVSQIPGLGRLPIIGRLFSSKNFQD 396
Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
+TE+ + TP++V+P L + D + F R + +
Sbjct: 397 NKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSDLEFAVQRNLGLDLMSGETPRP---- 452
Query: 466 KGAIGFIY 473
GA GF+Y
Sbjct: 453 VGAAGFVY 460
>gi|115358171|ref|YP_775309.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
gi|115283459|gb|ABI88975.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
Length = 460
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 123/457 (26%), Positives = 209/457 (45%), Gaps = 29/457 (6%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
A + + G +SI K +L + + V+DP+ AD+ V SPRT+++FG
Sbjct: 18 APGVALAQRAHAVEAGATLSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVFG 77
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
K G +I +G + + +L ++++ D L+ L + V ++++ G V
Sbjct: 78 KKAGTTTLIALGANHRPILRKTVIVQVDTVSLQAVLDSRFPQLKLSVSGAPGSLMVSGKV 137
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+ D+ ++ +L+ ++++N L ++ QV L+V + EV R++ +
Sbjct: 138 PSAADADAVMQSLAPYLNDK----------ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQ 187
Query: 212 QIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDFSVKGVLDRFSFETVLHA 262
Q+G S G++ + R+S + VL A
Sbjct: 188 QLGINWSSLGAAGNFIGGLFNGRTLMDPTNRLFNLSPTGAYSVLGGFHTGRWSIDVVLDA 247
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFTP 320
L++ I LAEP LTA+SGQ+ASF +GG+ ++TGA +V +GV L FTP
Sbjct: 248 LDQEGLITMLAEPNLTAMSGQTASFLAGGEIPIPVAQAGNTTGAITVEFKPFGVSLDFTP 307
Query: 321 TVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
TVL+ RI L+++ EVSE + +P VR+ +TTVEL SG + + GLL+
Sbjct: 308 TVLADNRISLKVRPEVSEVDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQS 367
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
IP L ++PI+G LF + F +TE+ + TP++V+P L + D +
Sbjct: 368 QTANTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVAR 427
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
F R + + GA GF+Y
Sbjct: 428 PSSDLEFAVQRNLGLDLMSGETPRP----VGAAGFVY 460
>gi|150377247|ref|YP_001313842.1| type II and III secretion system protein [Sinorhizobium medicae
WSM419]
gi|150031794|gb|ABR63909.1| type II and III secretion system protein [Sinorhizobium medicae
WSM419]
Length = 466
Score = 305 bits (782), Expect = 8e-81, Method: Composition-based stats.
Identities = 119/456 (26%), Positives = 214/456 (46%), Gaps = 18/456 (3%)
Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
F +V + + +A + ++ + I + K + ++ ++++ D
Sbjct: 9 FAFFCLVLAVFMGIGVGSSASANGDSVEISSNFSRSIRVAKGKTVTIRAVQRFDEIVIGD 68
Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
P A V + R+ Y+ G +G +V + + + +DI + D L T+R+ +
Sbjct: 69 PEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPG 128
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
SN++V + +VL G + +A +++ F ++++N + I
Sbjct: 129 SNVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD-----------EEIINSVKITSS 177
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV L V E+ RD+ K++G + S + S S F + + G + +
Sbjct: 178 QQVQLNVRFVEINRDVGKELGTRISAAYAWSNGSVEFNSRPRATSNTPAGSLIGSLIGEG 237
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+S + + ALE R LAEP L A SG+++SF +GG+ VS G +V+ +G
Sbjct: 238 YSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIP-VSEDDGQIAVSYKKFG 296
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIV 369
V L FTPTVLS G I L I+ EVS + +P + VR+A T+V+L SG + +
Sbjct: 297 VGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVRNISIPGFSVRRARTSVDLKSGQSFM 356
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLS 428
+AGLL+ + + + +P L ++PILGALF + + R ET++ I TP LVKP+ + ++
Sbjct: 357 IAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPHLVKPMDPLKKVA 416
Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
P D +A+ F ++++ Q
Sbjct: 417 SPSDRTKRPTEAEFFL-GNIDEVNADDRTRTASTQA 451
>gi|113866744|ref|YP_725233.1| flp pilus assembly protein secretin [Ralstonia eutropha H16]
gi|113525520|emb|CAJ91865.1| flp pilus assembly protein secretin [Ralstonia eutropha H16]
Length = 618
Score = 305 bits (782), Expect = 8e-81, Method: Composition-based stats.
Identities = 111/441 (25%), Positives = 207/441 (46%), Gaps = 21/441 (4%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
+ A I + + + K ++ + V++ + +P + SP+T+Y+ G
Sbjct: 76 SGEARGPNCTGAIRSESSVMVPVGKSQLITLQEPVRNRTLGNPNVVQATMVSPQTLYVLG 135
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGM 150
+ VG N+I+ G G +++++ D L+ +L + + IRV +D +VL G
Sbjct: 136 RAVGTTNMIVQGRSGSC-SIINVVVNADAGGLQTSLGQLLPGEPGIRVMTAADNLVLTGS 194
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
V Q +Q+A+E+++ + + + V+N+L++ QV L+V +AEV + +L
Sbjct: 195 VTNAQTAQQAMEIAQAYANAAQGGDGNKK--GGVLNMLSVDTPQQVMLEVKVAEVSKTLL 252
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
Q+G ++ G S++ ++ + F+ + A + + ++
Sbjct: 253 NQLGSTVNL----QGGFGSWSGGLVTSLLTGASSAIFASKANNRPFDIAIDAQKNDSLVK 308
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYK----TVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
LAEP L ISGQ ASF +GG+ V + G ++ ++GV L FTPTVL+ G
Sbjct: 309 ILAEPNLVTISGQEASFLAGGKIYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANG 368
Query: 327 RIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
RI L++ EVSE +P R+A TTV++ G + + GLL D
Sbjct: 369 RIHLKVSPEVSELSPTGATIRGGTLAGQSILPVITTRRASTTVQMRDGESFAIGGLLTDS 428
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ + +P ++P+LG LFR++++ ++ TE+ TP LVKP+ + P D +S
Sbjct: 429 ARGSLKALPGAGEVPVLGTLFRSTQYQQDLTELVFVITPRLVKPMQTSNYPLPTDSFSTP 488
Query: 438 DDAKAFFFNRVNKIYGPKEAS 458
+ +F + +
Sbjct: 489 NPLSLYFMGNMEGSGKRQPQP 509
>gi|302343419|ref|YP_003807948.1| type II and III secretion system protein [Desulfarculus baarsii DSM
2075]
gi|301640032|gb|ADK85354.1| type II and III secretion system protein [Desulfarculus baarsii DSM
2075]
Length = 466
Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats.
Identities = 113/485 (23%), Positives = 192/485 (39%), Gaps = 43/485 (8%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
M + + A+A + ++ + ++ +P ++ V
Sbjct: 1 MSGFCRLAVAALIVAFAVATPASAR-------AEARTGRLEVAAGHSRLVDLPAPLKRVS 53
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
V+D T ADV+V +PR +Y+ G+ G N+ + + + + + RD L+ R
Sbjct: 54 VADETVADVLVINPRQIYVNGRKPGNTNITVWDRAERVIAAYAVGVGRDYTRLKAAFARV 113
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ I V + +VL G V + ++A ++ F ++V NLL +
Sbjct: 114 LPGEAIEVHELEGALVLAGSVSSESAREKAESIARLF------------EKERVSNLLEV 161
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--GPSKSFAADFGGKF---------- 238
+ QV LK+ AEV R K++ + +F + G
Sbjct: 162 VDQKQVLLKLRFAEVNRQAAKRMNVNLGYWDPARPGNIFFTFLDNMTGPPSIDYSKGSIE 221
Query: 239 --VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+S + L L++ + LAEP L +SG+ A+F +GG+
Sbjct: 222 FDLSANVGAWGGLNDSGRQYMAFLDILKQNGLAKILAEPNLVCVSGKKANFLAGGEFPIP 281
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYR 352
T++ YGV L F P VL G+I L ++ EVSE + +P
Sbjct: 282 VP--GRDYTAIVFKKYGVQLTFLPKVLPNGKISLEVEPEVSELDYSPGVVTDGFVVPGLT 339
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R+A T +EL G +AGLLK D+ + P L +PILGALFR+S++ ETE+ I
Sbjct: 340 TRRASTQLELGDGQGFAIAGLLKQDVTRSVSKWPFLGDLPILGALFRSSQYRNRETELLI 399
Query: 413 AATPFLVKPVAMRDLSRPDDH-YSVEDDAKAFFFNRV---NKIYGPKEASEVEGQNYKGA 468
TP +V+P + DD + + + ++ G A +G
Sbjct: 400 VVTPHIVRPGDKTPDPLIGPRDFDDPDDMDFYLWGKTGGDDEPPGRAGAKAERSMEMEGR 459
Query: 469 IGFIY 473
G
Sbjct: 460 FGHEV 464
>gi|84386797|ref|ZP_00989822.1| type II and III secretion system protein [Vibrio splendidus 12B01]
gi|84378325|gb|EAP95183.1| type II and III secretion system protein [Vibrio splendidus 12B01]
Length = 465
Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats.
Identities = 109/460 (23%), Positives = 196/460 (42%), Gaps = 45/460 (9%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ +N+ ++++P + + +S+ A+ + + +FGK G A + ++
Sbjct: 21 ASTASTFDVTINEARMIRLPEKAKSIFISNTHIANYQTLTNTKVMIFGKQAGSATITVLN 80
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ + I + + ++ ++++ E + + L G V + + V L
Sbjct: 81 EQERVIYTNKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSL 140
Query: 164 SETFLSQSGRNQYANS-----------------------SSKKVMNLLNIAGEDQVTLKV 200
++ +LS + + +++N L + +QV ++V
Sbjct: 141 AKGYLSPIVGSTEQQESSNSQGNSNNSSSSTNQNQQTQLNDDELINQLVVTMPNQVNIRV 200
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
IAEV R++ ++G + G + S ++
Sbjct: 201 KIAEVSRNVSNKLGIKWGSIAGGVGQFSF-------------SKLPNVSSWGKPSITALI 247
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
AL + LAEP LTA+SG+ A F GGQ +++ T T + D+GV L+FTP
Sbjct: 248 DALATNGMMSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTP 305
Query: 321 TVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
TVLS RI L++ EVS I +N + PS+ R A TT+EL SG + L GLLK
Sbjct: 306 TVLSQNRISLKVNPEVSNISIESQQVINGTNFPSFTTRSASTTIELASGQSFALGGLLKS 365
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
+ + + +PL+ +IP+LG+LFR++ F R ETE+ I T +LV+P + P D
Sbjct: 366 EDIEQLQKVPLIGEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMPLPTDGLIP 425
Query: 437 EDDAKAFF---FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
D + + ++ + G GF Y
Sbjct: 426 LSDVERLLAWPREQQKTSNNKATYTDNQKPRLLGDNGFYY 465
>gi|110632971|ref|YP_673179.1| type II and III secretion system protein [Mesorhizobium sp. BNC1]
gi|110283955|gb|ABG62014.1| type II and III secretion system protein [Chelativorans sp. BNC1]
Length = 464
Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats.
Identities = 127/470 (27%), Positives = 218/470 (46%), Gaps = 25/470 (5%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
+ L R F + ++ F ++A + V + K I + K + ++
Sbjct: 10 KRLTRYVFAVCALAFFG-------CAFGTMDSSANGDSIQVSVAKDSAIRVARGKPLTVE 62
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
+ ++++ DP A + + + Y+ G+ +G + L + + D+ + D
Sbjct: 63 IAEAFDEIVIGDPEIATINPLTDHSFYVLGQGLGTTGIALYDESKRLIGTFDVEVTLDTK 122
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
L T+R+ + SNI+V + +VL G +++A +++ F
Sbjct: 123 MLAGTIRQSVPGSNIKVTSANGRIVLSGSAPDAVAAEKASQIAARFAGD----------- 171
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ V+N ++I QV L V E+ R + K++G + S +SG SF +D +
Sbjct: 172 EDVINTIDITSSQQVQLNVRFVEINRAVGKELGTKISAAYVTSGGGISFNSDPRASSNTP 231
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
GD V D FS + + ALE R LAEP L A SG++ASF +GG+ VS
Sbjct: 232 AGDLIGGLVSDGFSIDVAIEALEDRGVARRLAEPNLIARSGETASFLAGGEFPIP-VSEE 290
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKAD 357
GA +V+ +GV L+FTPTVLS G I L I+ EVS V +P + VR+A
Sbjct: 291 NGAVTVSYKKFGVGLNFTPTVLSDGLIALDIEPEVSSIDTTSSYRVGNIAIPGFTVRRAR 350
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T+++L SG + ++AGLL+ + + +P L ++P+LGALF + + R ET++ I TP
Sbjct: 351 TSIDLRSGQSFMMAGLLQSQNEINTQRVPGLGQLPVLGALFSSKAYQRRETDLVIIVTPH 410
Query: 418 LVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
LV P+ ++ P D D + F V ++ + +
Sbjct: 411 LVSPIPPGNKVATPADRTKPARDGEVFL-GNVEEVRLQQRTAANAPSAGH 459
>gi|307300715|ref|ZP_07580490.1| type II and III secretion system protein [Sinorhizobium meliloti
BL225C]
gi|306904249|gb|EFN34834.1| type II and III secretion system protein [Sinorhizobium meliloti
BL225C]
Length = 466
Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats.
Identities = 118/461 (25%), Positives = 211/461 (45%), Gaps = 18/461 (3%)
Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
F ++ + +A + ++ + I + K + ++ ++++ D
Sbjct: 9 FAFFCFVVALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIRAVQRFDEIVIGD 68
Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
P A V + R+ Y+ G +G +V + + + +DI + D L T+R+ +
Sbjct: 69 PEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPG 128
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
S+++V + +VL G + +A +++ F ++V+N + I
Sbjct: 129 SSVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD-----------EEVINSIKITSS 177
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV L V E+ RD+ K++G Q S + S S F + + G + +
Sbjct: 178 QQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTPAGSLIGSLIGEG 237
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+S + + ALE R LAEP L A SG+++SF +GG+ G +V+ +G
Sbjct: 238 YSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIPISEQ-DGTITVSYKKFG 296
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369
V L FTPTVLS G I L I+ EVS V +P + VR+A T+V+L SG + +
Sbjct: 297 VGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRARTSVDLKSGQSFM 356
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLS 428
+AGLL+ + + + +P L ++PILGALF + + R ET++ I TP LVKP+ + ++
Sbjct: 357 IAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPHLVKPIDPLKKVA 416
Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
P D +A+ F ++++ Q
Sbjct: 417 SPSDRTKRPTEAEFFL-GNIDEVEVNGRGRSASRQARVARA 456
>gi|193782542|ref|NP_435332.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021]
gi|307319126|ref|ZP_07598556.1| type II and III secretion system protein [Sinorhizobium meliloti
AK83]
gi|193072997|gb|AAK64744.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306895233|gb|EFN25989.1| type II and III secretion system protein [Sinorhizobium meliloti
AK83]
Length = 466
Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats.
Identities = 118/456 (25%), Positives = 211/456 (46%), Gaps = 18/456 (3%)
Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
F ++ + +A + ++ + I + K + ++ ++++ D
Sbjct: 9 FAFFCFVVALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIRAVQRFDEIVIGD 68
Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
P A V + R+ Y+ G +G +V + + + +DI + D L T+R+ +
Sbjct: 69 PEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPG 128
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
S+++V + +VL G + +A +++ F ++V+N + I
Sbjct: 129 SSVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD-----------EEVINSIKITSS 177
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV L V E+ RD+ K++G Q S + S S F + + G + +
Sbjct: 178 QQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTPAGSLIGSLIGEG 237
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+S + + ALE R LAEP L A SG+++SF +GG+ G +V+ +G
Sbjct: 238 YSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIPISEQ-DGTITVSYKKFG 296
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369
V L FTPTVLS G I L I+ EVS V +P + VR+A T+V+L SG + +
Sbjct: 297 VGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRARTSVDLKSGQSFM 356
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLS 428
+AGLL+ + + + +P L ++PILGALF + + R ET++ I TP LVKP+ + ++
Sbjct: 357 IAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPHLVKPIDPLKKVA 416
Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
P D +A+ F ++++ Q
Sbjct: 417 SPSDRTKRPTEAEFFL-GNIDEVEVNGRGRSASRQA 451
>gi|172065273|ref|YP_001815985.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
gi|171997515|gb|ACB68432.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
Length = 656
Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats.
Identities = 121/434 (27%), Positives = 213/434 (49%), Gaps = 19/434 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+
Sbjct: 92 GAVRDATSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 151
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +L++ + +I V + T+VL G V Q +Q+A
Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQA 210
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
V+++ + S S + V+N+L + QV L+V +AEV + ++ Q+G +I
Sbjct: 211 VQIAHAY-SDSAGDGGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQ 269
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G S + ++ S G + + F A ++ LAEP L I
Sbjct: 270 GGFGSWSGALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTI 325
Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
SGQ A+F +GG+ SS T ++ ++GV L FTPTVL+ GRI L++ EVS
Sbjct: 326 SGQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385
Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
E +P R+A TTV++ G + + GL+KD+ + IP +
Sbjct: 386 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGV 445
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D +S ++ + +
Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFSKPNEVDVYATGNM 505
Query: 449 NKIYGPKEASEVEG 462
G ++A+
Sbjct: 506 EGRKGVRKATMQPS 519
>gi|16520026|ref|NP_444146.1| outermembrane protein RhcC2; component of type III secretion
apparatus [Sinorhizobium fredii NGR234]
gi|2495099|sp|P55702|Y4XJ_RHISN RecName: Full=Uncharacterized protein y4xJ
gi|2182718|gb|AAB91933.1| outermembrane protein RhcC2; component of type III secretion
apparatus [Sinorhizobium fredii NGR234]
Length = 423
Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats.
Identities = 136/446 (30%), Positives = 205/446 (45%), Gaps = 30/446 (6%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
+ + I +S L K + +P + V+DPT AD S RT+++FGK G
Sbjct: 1 MPRAAPNSINATLNLSSSLGK--TVHLPAPAATIFVADPTIADYQAPSNRTIFVFGKKFG 58
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
+ ++ + +G+ + L +++ + IA L LR + D I V +L G +
Sbjct: 59 RTSLFALDENGEALAELHVVVTQPIADLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAE 118
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
A ++E FL ++N + +AG QV L V +AEV R LK +G
Sbjct: 119 VVDIAKRVTEQFLGDGA----------PIVNNIKVAGSLQVNLSVRVAEVSRSGLKALGI 168
Query: 216 QHSITGSSSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
S G G GG + D S VL AL + LA
Sbjct: 169 NLSAFGQFGNFKVGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLA 228
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
EP LTA+SG++ASF +GG+ V G TSV +GV L F PTVL I + ++
Sbjct: 229 EPNLTAMSGETASFLAGGEFPIP-VLQENGQTSVEFRRFGVSLEFVPTVLDNNLINIHVK 287
Query: 334 TEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
EVSE + VN +P+ R+ADT VEL SG + V+ GL++ ++ P L
Sbjct: 288 PEVSELSLQGAVQVNGIAVPAVSTRRADTVVELASGQSFVIGGLIRRNVNNDISAFPWLG 347
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRV 448
+IPILGALFR+S F +EE+E+ I TP++V+P +S P D + +
Sbjct: 348 RIPILGALFRSSSFQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAPA----------L 397
Query: 449 NKIYGPKEASEVEGQNYKGAIGFIYK 474
+ A + + KG +GFI +
Sbjct: 398 GTPPRARAAISTDAPSVKGDLGFIIE 423
>gi|187927687|ref|YP_001898174.1| type II and III secretion system protein [Ralstonia pickettii 12J]
gi|187724577|gb|ACD25742.1| type II and III secretion system protein [Ralstonia pickettii 12J]
Length = 663
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 118/478 (24%), Positives = 216/478 (45%), Gaps = 35/478 (7%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
R + S NP++A P + + + + K ++ +P
Sbjct: 65 SRAGASAPVQMTISMNPALATAPVA----DVRGPNCTGAVRGESSVVVPVGKSSLISLPE 120
Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
V++ + +P + SP++MYL G++VG N+I+ G G + ++ D L+
Sbjct: 121 PVRNRTLGNPAVVQATMVSPQSMYLLGRSVGTTNMIVQGRSGACSIVNVVVNA-DAGGLQ 179
Query: 125 MTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------------ 171
+L + + N IRV +D++VL G V + Q +Q+A+E++ + + +
Sbjct: 180 TSLAQLMPGENKIRVMTAADSLVLAGNVSSAQAAQQAMEIAHAYAASAQSGADKGGGAAG 239
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ V+N++ + QV L+V +AEV + +L Q+G ++ G S++
Sbjct: 240 ALGGGGAAGGANVINMMIVDTPQQVMLEVKVAEVSKTLLNQLGSALNV----QGGFGSWS 295
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
++ + F+ L A + + ++ LAEP L +SGQ ASF +GG
Sbjct: 296 GGLLTSLLTGSSTGFFANKANNRPFQVELDAQKNDSLVKILAEPNLVTLSGQEASFLAGG 355
Query: 292 QHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
+ SS+ ++ +YGV L FTPTV++ GRI L++ EVSE
Sbjct: 356 KIYIPVAQSSSSGGAPTITLQEEEYGVGLKFTPTVMANGRINLKVAPEVSELSPTGATVT 415
Query: 348 ---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
+P R+A TTV++ G + + GLL+D+ + + +P +IP+LG LF
Sbjct: 416 GANTNGQTILPLITTRRASTTVQMRDGESFAIGGLLQDNARGSLKALPGAGEIPVLGTLF 475
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
R+++F + TE+ I TP LV+P+ P D +S ++ + +
Sbjct: 476 RSTQFQHDLTELVIVITPRLVQPMQTASYPLPTDSFSTPNELAVYLTGNMEGSGAKNR 533
>gi|149912019|ref|ZP_01900613.1| putative membrane protein [Moritella sp. PE36]
gi|149804918|gb|EDM64952.1| putative membrane protein [Moritella sp. PE36]
Length = 473
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 120/459 (26%), Positives = 200/459 (43%), Gaps = 42/459 (9%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
+ + + LNK ++++P + + ++ + AD + + +FGK G ++ ++
Sbjct: 25 AQTLDVVLNKARLIELPKTAKSIFIASSSIADYQTLTNTKIMVFGKKTGSTSLYVLDAKE 84
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
+ + + + ++ L + + D+ E + + L G V T +++ V LSE
Sbjct: 85 NVIYSATVKVSHNVTELNELIHKEFPDAIFNAESTAGKLFLKGQVPTPSMAEKIVRLSEG 144
Query: 167 FLS--------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
++S Q + +N + +++N L + +QV L++ IAEV
Sbjct: 145 YVSTLASTESSDSQQSGNAQSSTQPTQPAASNVDNDELINQLQVTMPNQVNLRIRIAEVS 204
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
R + ++G + G F + GG ++ AL
Sbjct: 205 RKVSNKLGIKWGSQG--------FGTGTFAFLDNYGGKLGGVNPASWADLSVIVDALATN 256
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+ LAEP LTA+SG+ ASF GG+ V S T V +GV L F PTVLS
Sbjct: 257 GMMSVLAEPNLTAMSGEEASFLVGGEIPIPLVYSDTAT--VEYKTFGVRLDFKPTVLSAN 314
Query: 327 RIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
RI L++ TEVS N + P++ R+A TT+EL SG + L GLL+
Sbjct: 315 RISLKVATEVSTVSSETNVQIGGTQGSSSFPTFVTRRASTTIELASGQSFALGGLLQSKD 374
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
+ + +PLL IP+LGALFR++ F REETE+ I AT +LV+P L P D
Sbjct: 375 IEQLQKMPLLGDIPVLGALFRSNEFQREETELIIIATAYLVQPTRADILPLPTDGLIPMS 434
Query: 439 DAKAFF----FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
D + + + ++ G GF Y
Sbjct: 435 DVERLLAWPVSKQATNATDNESRTDNRQPRLLGDNGFYY 473
>gi|197106459|ref|YP_002131836.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1]
gi|196479879|gb|ACG79407.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1]
Length = 484
Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats.
Identities = 110/430 (25%), Positives = 202/430 (46%), Gaps = 20/430 (4%)
Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
F++ + + A + + + V G ++++ K ++++ V ++DP
Sbjct: 4 FAAIAAALSVGAGTLAPQSALAAAAVVAGPSSELAVEAGKGRLIRLDRPAATVFIADPKI 63
Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
ADV V SP +Y+ GK G ++ + + + +L + + D A L+ L+R +S I
Sbjct: 64 ADVQVKSPTLVYVLGKAPGATSLFALDAGERMIADLAVNVGIDTARLDQALKRHAPNSQI 123
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+VE V ++L G + + + ++ F+ + + +++N + + +Q+
Sbjct: 124 QVESVDGALILSGKAGSAAEGADILRIAAEFVP-----GEGEARAGRLINRIVVEQPNQI 178
Query: 197 TLKVTIAEVRRDILKQIGFQHSITG----------SSSGPSKSFAADFGGKFVSEGGDFS 246
L V +AEV + + +G G + + A+ ++
Sbjct: 179 NLHVRVAEVSKQAREVLGVNWDAMGLLGEGMVGLATGRQIFTNPASRETFSRLNGTDTIV 238
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
++ AL++ ++ LAEP LTA+SG+ ASF +GG++ +
Sbjct: 239 GSYQDGDLDLNVLVDALKQKGLVKVLAEPNLTAVSGEPASFLAGGEYPIPVPQRGEDLIT 298
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVEL 362
+ +GV L F TVL GRI L ++ EVS+ I V +P+ R+A+TTVEL
Sbjct: 299 IDYKQFGVSLSFVATVLDGGRISLNVRPEVSQLSEAGAITVQGLTVPALTTRRAETTVEL 358
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
SG + +AGLL++ + +P L IP+LG LFR+ F + E+E+ I TP+LVKP
Sbjct: 359 GSGQSFAIAGLLQNTSNETLRKLPGLGDIPVLGNLFRSKEFQKNESELVIIVTPYLVKPA 418
Query: 423 AMRDLSRPDD 432
+ L+ P D
Sbjct: 419 SRT-LATPAD 427
>gi|77919345|ref|YP_357160.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380]
gi|77545428|gb|ABA88990.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380]
Length = 507
Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats.
Identities = 119/501 (23%), Positives = 204/501 (40%), Gaps = 49/501 (9%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M + + + LF + + + + + ++
Sbjct: 1 MTTRRAILPAICFLGLFCLALFTGTAAA--------------DDIEHLTLDVNIGGSELV 46
Query: 61 QVPVDVQD--VLVSDPTKADVVVHSPR--TMYLFGKNVGQANVILIGHDGKQM-LNLDIL 115
++ Q +L+S+ P +Y GK +G + V + +Q+ +D+
Sbjct: 47 EIREPSQRMKILISNGDIIGARPLRPNLINVYNLGKKIGFSRVTVWDDAARQVRAIIDVS 106
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
+ D+ L+ + NI+V VVL G V + + ++ + L+ETFL +
Sbjct: 107 VNLDLTPLKQKIGELYPHENIKVYASETGVVLSGTVSSPEVVEQVIRLTETFLPKKAEAS 166
Query: 176 YANSSSKK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227
+ + K + NLL++ G QV L+V AEV R + G
Sbjct: 167 TSGKGTGKSGSGITNLLSVGGVQQVMLEVKFAEVTRSSGRDWQAALGFNGLGDNSGLVAG 226
Query: 228 ----------KSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
F G ++ + F + L LE R LAEP
Sbjct: 227 VGGISGDISGGDFTGKLGSVLLNFADFASNPANIFVQMGDFTSALRFLEDEGLARILAEP 286
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
L +SGQ ASF +GG+ ++ ++GV L FTP V+S G+I LR+
Sbjct: 287 RLVTMSGQEASFLAGGEFPIPVPDEDG--ITIEFREFGVSLRFTPVVMSDGKISLRVAPS 344
Query: 336 VSEPVIG--------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
VS+ ++P+ RK +TTV+L G T+ LAGLL+D +++ IP
Sbjct: 345 VSDIASTSSIPSSITGTTYNVPNLTTRKLETTVQLYDGQTLALAGLLQDTLRESVSKIPG 404
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
L +PILGALFR++ + +E+T++ IA TP LVKP LS P ++ + + + R
Sbjct: 405 LGDLPILGALFRSTSYTQEKTDLLIAVTPHLVKPSKEGTLSFPGEYMRPPNRLEFYLEGR 464
Query: 448 VNKIYGPKEASEVEGQNYKGA 468
+ P + S + ++
Sbjct: 465 LEGRRFPNDPSALSQHSFAAP 485
>gi|73542329|ref|YP_296849.1| type II and III secretion system protein:transport-associated
[Ralstonia eutropha JMP134]
gi|72119742|gb|AAZ62005.1| type II and III secretion system protein:Transport-associated
[Ralstonia eutropha JMP134]
Length = 633
Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats.
Identities = 110/454 (24%), Positives = 206/454 (45%), Gaps = 23/454 (5%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGK---KISIGLNKVIILQVPVDVQDVLV 71
S P+ G + + + + K ++ + V++ +
Sbjct: 56 MTISMAPAGTAPVGAAAPVPVADARGPNCTGAVRQESSVIVPVGKSQLITLQEPVKNRTL 115
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
+P + S +T+Y+ G+ VG N+I+ G G +++++ D L+ +L + +
Sbjct: 116 GNPNVVQATMVSAQTLYVLGRTVGTTNMIVQGRSGSC-SIINVVVNADAGGLQTSLSQLL 174
Query: 132 ADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS-GRNQYANSSSKKVMNLLN 189
IRV +D +VL G V Q + +A+++++ + + + V+N+L+
Sbjct: 175 PGEPGIRVMTAADNLVLTGSVTNAQSALQAMDIAQAYANAAQVGAGGDAGKKGGVLNMLS 234
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
+ QV L+V +AEV + +L Q+G ++ G S+ ++
Sbjct: 235 VDTPQQVMLEVKVAEVSKTLLNQLGSSVNL----QGGFGSWTGGLVTSLLTGASGAIFGS 290
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----TVSSSTGAT 305
+ F + A + + ++ LAEP L ISGQ ASF +GG+ V + G
Sbjct: 291 KANNKPFNFAIDAQKNDSLVKILAEPNLVTISGQEASFLAGGKIYIPVAQANVLNGAGTV 350
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKA 356
++ ++GV L FTPTVL+ GRI L++ EVSE +P R+A
Sbjct: 351 TLQEEEFGVGLKFTPTVLANGRIHLKVAPEVSELSPTGATVSGGTLAGQSVLPLITTRRA 410
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
TTV++ G + + GLL+D + + +P ++P+LG LFR++++ ++ TE+ TP
Sbjct: 411 STTVQMRDGESFAIGGLLQDSARGSLKALPGAGEVPVLGTLFRSTQYQQDLTELVFIITP 470
Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
LVKP+A + P D ++ D +F +
Sbjct: 471 RLVKPMATNNYPLPTDSFTTPDPFSLYFMGNMEG 504
>gi|254255254|ref|ZP_04948570.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa
AUO158]
gi|124900991|gb|EAY71741.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa
AUO158]
Length = 682
Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats.
Identities = 120/421 (28%), Positives = 215/421 (51%), Gaps = 19/421 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+
Sbjct: 92 GAVRDSTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGMSVGTTNMIV 151
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D A L+ +L + + + ++ V + T+VL G V + Q +Q+A
Sbjct: 152 QGKSGACR-VIDVAVGADAAGLQASLMQLMPNERDVHVSTAAGTIVLSGSVSSSQAAQQA 210
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
V ++ + S + V+N+L++ QV L+V +AEV + ++ Q+G +I
Sbjct: 211 VAIARAY-GDSAGDGNGGGKPGSVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQ 269
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G S + ++ S V + F + A ++ LAEP L I
Sbjct: 270 GGFGSWSGALVSNLLAGVASGA----VFNKANNRPFSVAVDAQNTDNLVKILAEPNLVTI 325
Query: 281 SGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
SGQ A+F +GG+ + ++ + T ++ ++GV L FTPTVL+ GRI L++ EVS
Sbjct: 326 SGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385
Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
E A +P R+A TTV++ G T + GL+KD+ + IP +
Sbjct: 386 ELSQTGVTLSATNVSGASILPLITTRRASTTVQMSDGETFAIGGLIKDNASGALKAIPGV 445
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
++P+LGALFR++ F ++ TE+ TP LVKP++ D++ P D +S ++A + +
Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFVITPHLVKPLSTADVALPTDSFSKPNEADVYATGYM 505
Query: 449 N 449
Sbjct: 506 E 506
>gi|114799407|ref|YP_759869.1| type II/III secretion system protein [Hyphomonas neptunium ATCC
15444]
gi|114739581|gb|ABI77706.1| type II/III secretion system protein [Hyphomonas neptunium ATCC
15444]
Length = 432
Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats.
Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 36/452 (7%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M ++R L + P++A A A ++ + K ++
Sbjct: 1 MSGIRRILIASCLAAL-CAQPALAWTQRSAPAGA-------------DQLELRRGKSAVV 46
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ ++V+DP A+ + S R+ ++ GK G V++ G +++ ++ +
Sbjct: 47 EADAAFATIVVADPEIAEAMPTSNRSFFVRGKKPGGTTVLIYDEAGAIAELIEVEVKLGL 106
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
L L R + I V V D V L G V T + A++L+E +
Sbjct: 107 DELRGDLGRLLPGEIIDVYAVHDGVYLDGKVTTAAAADMALQLAERHV------------ 154
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
V N L++ QV L+V E R +++IGF ++I + G +
Sbjct: 155 PGGVANGLSVGQSQQVMLEVRFLEASRKAVREIGFGNTIDANDVVAGTEGGTVSGLLEKT 214
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+V + + + L ALE IRTLAEP L A+SG +ASF +GG+ S
Sbjct: 215 ----LAVFTNVGGENIDVSLRALEEKGVIRTLAEPNLVALSGDTASFLAGGEFPIPVSSR 270
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKA 356
T V +GV L FTPTVL G + LR++ EVS G + D+P VR+A
Sbjct: 271 DNEVT-VEFKKFGVSLDFTPTVLGDGLVNLRVRPEVSALDRGNGIRASNIDIPGVSVRRA 329
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
DTTVEL G +AGLL+++ P L +PILG+LF + R+ R ETE+ I TP
Sbjct: 330 DTTVELHDGQAFAIAGLLQNNYTNDVRQTPWLGNVPILGSLFSSKRYQRNETELVIIVTP 389
Query: 417 FLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNR 447
LV+P + + P D S +A+ F +
Sbjct: 390 RLVQPFSHPEAIVSPLDSVSEPTEAELFLLGK 421
>gi|167841781|ref|ZP_02468465.1| type II/III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 433
Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats.
Identities = 125/446 (28%), Positives = 210/446 (47%), Gaps = 27/446 (6%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
+++ ++++P V V+DP ADV V +P+ +++ GK G +
Sbjct: 2 ARAAEPAPVLAVPAGGGEMVKLPEPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLF 61
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+G + + +L ++++ D L+ L ++ + ++++ G V + D+
Sbjct: 62 ALGANNRTILRETVVVDVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAV 121
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + +L Q + ++N L +A QV L+V I EV R+I +Q+G S
Sbjct: 122 AQTLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSAL 171
Query: 221 GSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRT 271
G+S +S G FSV G R+S + VL AL++ I
Sbjct: 172 GASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVLGGFHTSRYSIDGVLDALDQEGLITM 231
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+
Sbjct: 232 LAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLK 291
Query: 332 IQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ + +P
Sbjct: 292 VRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPG 351
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
L+++P+LG LF + + ++TE+ + TP++V+P +L D + F R
Sbjct: 352 LARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELHDALDDVTRPSSDIEFVLQR 411
Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIY 473
I + G GF+Y
Sbjct: 412 SLGIDPLGG----DAPRLAGPAGFVY 433
>gi|194288836|ref|YP_002004743.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG
19424]
gi|193222671|emb|CAQ68674.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG
19424]
Length = 621
Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats.
Identities = 111/429 (25%), Positives = 206/429 (48%), Gaps = 21/429 (4%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
I + + + K ++ + V++ + +P+ + SP+T+Y+ G+ VG N+I
Sbjct: 84 TGAIRSESSVVVPVGKSQLITLQEPVRNRTLGNPSVVQATMVSPQTLYVLGRTVGTTNMI 143
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQR 159
+ G G +++++ D L+ +L + + IRV +D +VL G V Q +Q+
Sbjct: 144 VQGRSGSC-SIINVVVNADSGGLQTSLGQLLPGEPGIRVTTAADNLVLTGSVTNAQAAQQ 202
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
A+E+++ + + + S V+N++++ QV L+V +AEV + +L Q+G ++
Sbjct: 203 AMEIAQAYANAAQGGDGNKKGS--VLNMMSVDTPQQVMLEVKVAEVSKTLLNQLGSAVNL 260
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
G S++ ++ + FE L A + + ++ LAEP L
Sbjct: 261 ----QGGFGSWSGGLVTSLLTGASAAVFGSKANNRPFEFALDAQKNDSLVKILAEPNLVT 316
Query: 280 ISGQSASFTSGGQHLYK----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ ASF +GG+ V + G ++ ++GV L FTPTVL+ GRI L++ E
Sbjct: 317 ISGQEASFLAGGKIYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANGRIHLKVAPE 376
Query: 336 VSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE +P R+A TTV++ G + + GLL D + + +P
Sbjct: 377 VSELSPTGATIRGGTLAGQTILPVITTRRASTTVQMRDGESFAIGGLLTDSARGSLKALP 436
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
++P+LG LFR++++ ++ +E+ TP LVKP+ + P D +S + +F
Sbjct: 437 GAGEVPVLGTLFRSTQYQQDLSELVFIITPRLVKPMQTNNYPLPTDSFSAPNPLSLYFMG 496
Query: 447 RVNKIYGPK 455
+
Sbjct: 497 NMEGDGKRP 505
>gi|167719684|ref|ZP_02402920.1| type II/III secretion system protein [Burkholderia pseudomallei
DM98]
gi|167902788|ref|ZP_02489993.1| type II/III secretion system protein [Burkholderia pseudomallei
NCTC 13177]
Length = 448
Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats.
Identities = 129/458 (28%), Positives = 213/458 (46%), Gaps = 27/458 (5%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
AV G +++ ++++P V V+DP ADV V +P+ ++
Sbjct: 5 ALALGMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVF 64
Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
+ GK G + +G + + +L ++++ D L+ L + + ++++
Sbjct: 65 VLGKKAGTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVS 124
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G V + D+ V+ + +L Q + ++N L +A QV L+V I EV R+
Sbjct: 125 GRVPSAADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRN 174
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETV 259
I +Q+G S G+S +S G FSV G R+S + V
Sbjct: 175 ITQQLGINWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGV 234
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
L AL++ I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FT
Sbjct: 235 LDALDQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFT 294
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLK 375
PTVL+ RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+
Sbjct: 295 PTVLADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQ 354
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
+ +P L+++P+LG LF + + ++TE+ + TP++V+P +L D +
Sbjct: 355 SKSSDVLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVT 414
Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
F R I + G GF+Y
Sbjct: 415 RPSSDIEFVLQRSLGIDPLGG----DAPRLAGPAGFVY 448
>gi|171320618|ref|ZP_02909638.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
gi|171094131|gb|EDT39218.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
Length = 460
Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats.
Identities = 131/457 (28%), Positives = 214/457 (46%), Gaps = 29/457 (6%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
A + G +SI K +L + + V+DP+ AD+ V SPRT+++FG
Sbjct: 18 APGVALAQRAHAADAGAALSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVFG 77
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
K G +I +G + + +L ++++ D A L+ L + V ++++ G V
Sbjct: 78 KKAGTTTLIALGANHRPILRRTVIVQVDTASLQTVLDSRFPQLKLSVSGAPGSLMVSGKV 137
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+ D+ ++ +L+ +K++N L ++ QV L+V + EV R++ +
Sbjct: 138 PSAADADAVMQSLTPYLNDK----------EKIVNRLTLSRPIQVNLRVRVTEVSRNVTQ 187
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFV-------SEGGDFSVKGVL--DRFSFETVLHA 262
Q+G S G++ S G +SV G R+S + VL A
Sbjct: 188 QLGINWSSLGAAGNFIGGLFNGRTLMDPTTKLFNLSPTGAYSVLGGFHAGRWSIDVVLDA 247
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFTP 320
L++ I LAEP LTA+SGQ+ASF +GG+ S+TGA +V +GV L FTP
Sbjct: 248 LDQEGLITMLAEPNLTAMSGQTASFLAGGEIPIPVAQAGSTTGAITVEFKPFGVSLDFTP 307
Query: 321 TVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
TVL+ RI L+++ EVSE + +P VR+ +TTVEL SG + + GLL+
Sbjct: 308 TVLADNRISLKVRPEVSEVDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQS 367
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
IP L ++PI+G LF + F +TE+ + TP++V+P L + D +
Sbjct: 368 QTADTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVAR 427
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
F R + + GA GF+Y
Sbjct: 428 PSSDLEFAVQRNLGLDLLSGET----PRLVGAAGFVY 460
>gi|207744158|ref|YP_002260550.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
gi|206595562|emb|CAQ62489.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
Length = 626
Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 117/463 (25%), Positives = 215/463 (46%), Gaps = 42/463 (9%)
Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
A +AA + + ++++ + K ++Q+P V++ V +P ++ S
Sbjct: 74 AATAEASRESAAKGPNCTGAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVS 133
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142
P+T+YL G+ VG N+I+ G G +D+ + D L+ TLR + + N++V +
Sbjct: 134 PQTLYLLGQEVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQSTLRTLMPGAKNVQVSAAA 192
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYANSS 180
D++VL G V +Q+ ++++ F+ G A
Sbjct: 193 DSLVLGGSVSDSVQAQKVLDIANAFVMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPR 252
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
S +++N++ + QV L+V +AEV + ++ Q+G ++ +G S+ F+S
Sbjct: 253 SPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNV----NGAFGSWTFGALANFLS 308
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
D + + L A + ++ LAEP+L AISGQ ASF +GG+
Sbjct: 309 GSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVSQG 368
Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGD 347
+ + +GV L FTPTV+ GRI L++ EVSE N
Sbjct: 369 AATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSI 428
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P R+A TT+++ G + + GL+K+++ + IP + ++P++GAL R++ F +++
Sbjct: 429 LPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQ 488
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
TE+ TP LVKP+ P D + + A+ F +
Sbjct: 489 TELVFVVTPHLVKPL-PAQYPLPTDSFGRANPAEIFLNGNMEG 530
>gi|167581961|ref|ZP_02374835.1| type II/III secretion system protein [Burkholderia thailandensis
TXDOH]
Length = 441
Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 128/454 (28%), Positives = 212/454 (46%), Gaps = 27/454 (5%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
AAV +++ ++++P V V+DP ADV V +P+ +++ GK
Sbjct: 2 GAAVEPRLARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGK 61
Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
G + +G + + +L +++ D L+ L ++ + ++++ G V
Sbjct: 62 KAGTTTLFALGANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVP 121
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+ D+ V+ + +L Q + ++N L +A QV L+V I EV R+I +Q
Sbjct: 122 SAADADAVVQTLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQ 171
Query: 213 IGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHAL 263
+G S G+S +S G FSV G +S + VL AL
Sbjct: 172 LGINWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDAL 231
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
++ I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL
Sbjct: 232 DQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVL 291
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
+ RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+
Sbjct: 292 ADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSS 351
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
+ +P L+++P+LG LF + + ++TE+ + TP++V+P +L D +
Sbjct: 352 DVLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSS 411
Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
F R I + G GF+Y
Sbjct: 412 DIEFVLQRSLGIDPLGG----DAPRLTGPAGFVY 441
>gi|90406750|ref|ZP_01214943.1| RhcC2 protein [Psychromonas sp. CNPT3]
gi|90312203|gb|EAS40295.1| RhcC2 protein [Psychromonas sp. CNPT3]
Length = 459
Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 122/458 (26%), Positives = 200/458 (43%), Gaps = 43/458 (9%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ K +++ L++ +L +P + + ++ AD + + +FGK VG ++ ++
Sbjct: 17 SAQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTKIMIFGKRVGSTSLYVLD 76
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ + + + ++ L ++ ++ + E + + L G V T +++ V L
Sbjct: 77 ARENVIYSATVKVNHNVQELNALIKHEFPNAQVHSESTAGKLFLKGQVSTPSIAEKIVRL 136
Query: 164 SETFLSQSGRNQYANSSS---------------------KKVMNLLNIAGEDQVTLKVTI 202
+E ++S +G + ++ ++++N L I QV L+V I
Sbjct: 137 AEGYVSSNGGKSESAGAATEGGAQDDQQGGESAQSTQNTQELINQLVITMPTQVNLRVRI 196
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
AEV R++ ++G + G G + + ++ A
Sbjct: 197 AEVSRNVSNKLGIKWGAQN-------------IGTISGTFGTKNWLPNVKFPDLSIMIDA 243
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
L I LAEP LTAISG+ ASF GG+ V + + +GV L F PTV
Sbjct: 244 LASNGLISILAEPNLTAISGERASFLVGGEIPLPVVFGDSAN--IIYKPFGVRLDFKPTV 301
Query: 323 LSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
LS RI L+I+ EVS N +P + RKA TT+EL SG + + GLL+
Sbjct: 302 LSANRIRLQIEPEVSTIAPRTNVQIGGSSLPVFITRKASTTIELASGQSFAIGGLLQSKD 361
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
+ + IPLL IPILGALFR+S F REETE+ I AT +LV+P S P D
Sbjct: 362 IEQLQKIPLLGDIPILGALFRSSEFQREETELIIIATVYLVQPTRSDKFSLPTDGLLPLS 421
Query: 439 DAKAFF---FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
D + +V +S G GF Y
Sbjct: 422 DIERLLAWPHKKVTPTTMGSFSSTPSQPRLLGDNGFYY 459
>gi|121600042|ref|YP_993006.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
gi|124383335|ref|YP_001026338.1| type II secretion system protein [Burkholderia mallei NCTC 10229]
gi|126450127|ref|YP_001080388.1| RhcC2 [Burkholderia mallei NCTC 10247]
gi|237812165|ref|YP_002896616.1| type II/III secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254178619|ref|ZP_04885274.1| RhcC2 [Burkholderia mallei ATCC 10399]
gi|254358540|ref|ZP_04974813.1| RhcC2 [Burkholderia mallei 2002721280]
gi|121228852|gb|ABM51370.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
gi|124291355|gb|ABN00624.1| putative type II secretion system protein [Burkholderia mallei NCTC
10229]
gi|126242997|gb|ABO06090.1| RhcC2 [Burkholderia mallei NCTC 10247]
gi|148027667|gb|EDK85688.1| RhcC2 [Burkholderia mallei 2002721280]
gi|160699658|gb|EDP89628.1| RhcC2 [Burkholderia mallei ATCC 10399]
gi|237503093|gb|ACQ95411.1| type II/III secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 482
Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats.
Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 27/452 (5%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
AV G +++ ++++P V V+DP ADV V +P+ +++ GK
Sbjct: 45 AVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKA 104
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
G + +G + + +L ++++ D L+ L + + ++++ G V +
Sbjct: 105 GTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSA 164
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
D+ V+ + +L Q + ++N L +A QV L+V I EV R+I +Q+G
Sbjct: 165 ADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLG 214
Query: 215 FQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALER 265
S G+S +S G FSV G R+S + VL AL++
Sbjct: 215 INWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQ 274
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+
Sbjct: 275 EGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLAD 334
Query: 326 GRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ +
Sbjct: 335 NRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDV 394
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
+P L+++P+LG LF + + ++TE+ + TP++V+P +L D +
Sbjct: 395 LAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDI 454
Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
F R I + G GF+Y
Sbjct: 455 EFVLQRSLGIDPLGG----DAPRLAGPAGFVY 482
>gi|76811933|ref|YP_333435.1| RhcC2 [Burkholderia pseudomallei 1710b]
gi|126441311|ref|YP_001058908.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
gi|126453026|ref|YP_001066150.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|134282366|ref|ZP_01769071.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
gi|217421397|ref|ZP_03452901.1| type II/III secretion system protein [Burkholderia pseudomallei
576]
gi|226196310|ref|ZP_03791892.1| type II/III secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|242314528|ref|ZP_04813544.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
gi|254179872|ref|ZP_04886471.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
gi|254188722|ref|ZP_04895233.1| type II/III secretion system protein [Burkholderia pseudomallei
Pasteur 52237]
gi|254197611|ref|ZP_04904033.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
gi|254261104|ref|ZP_04952158.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
gi|254297713|ref|ZP_04965166.1| type II/III secretion system protein [Burkholderia pseudomallei
406e]
gi|76581386|gb|ABA50861.1| RhcC2 [Burkholderia pseudomallei 1710b]
gi|126220804|gb|ABN84310.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
gi|126226668|gb|ABN90208.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|134246404|gb|EBA46493.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
gi|157806781|gb|EDO83951.1| type II/III secretion system protein [Burkholderia pseudomallei
406e]
gi|157936401|gb|EDO92071.1| type II/III secretion system protein [Burkholderia pseudomallei
Pasteur 52237]
gi|169654352|gb|EDS87045.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
gi|184210412|gb|EDU07455.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
gi|217395139|gb|EEC35157.1| type II/III secretion system protein [Burkholderia pseudomallei
576]
gi|225931527|gb|EEH27532.1| type II/III secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|242137767|gb|EES24169.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
gi|254219793|gb|EET09177.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
Length = 482
Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats.
Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 27/452 (5%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
AV G +++ ++++P V V+DP ADV V +P+ +++ GK
Sbjct: 45 AVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKA 104
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
G + +G + + +L ++++ D L+ L + + ++++ G V +
Sbjct: 105 GTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSA 164
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
D+ V+ + +L Q + ++N L +A QV L+V I EV R+I +Q+G
Sbjct: 165 ADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLG 214
Query: 215 FQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALER 265
S G+S +S G FSV G R+S + VL AL++
Sbjct: 215 INWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQ 274
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+
Sbjct: 275 EGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLAD 334
Query: 326 GRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ +
Sbjct: 335 NRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDV 394
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
+P L+++P+LG LF + + ++TE+ + TP++V+P +L D +
Sbjct: 395 LAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDI 454
Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
F R I + G GF+Y
Sbjct: 455 EFVLQRSLGIDPLGG----DAPRLAGPAGFVY 482
>gi|27376953|ref|NP_768482.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110]
gi|27350095|dbj|BAC47107.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110]
Length = 430
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 122/441 (27%), Positives = 200/441 (45%), Gaps = 17/441 (3%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
++I ++ + + + V+DP AD S T+++FGK G+ +
Sbjct: 2 PRAAPGSTTGTLNITSSQGKTVHLSAPAATIFVADPAIADYQAPSSSTIFVFGKKSGRTS 61
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
+ + +G+ + L I++ + + L L+ + D I+V +L G+ +
Sbjct: 62 LFALNENGEALAELRIVVTQPLEDLRAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVE 121
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
A +++E F+ + V+N + +AG QV L V +AEV R +K + +
Sbjct: 122 AARKVTEQFVG----------AGAPVVNKIQVAGSLQVNLSVRVAEVSRTAVKDLNINFT 171
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+G + G + G GG + + VL AL LAEP LT
Sbjct: 172 ASGPN-GAFLATGKPGGSGRAGGGGTIGIGFSTGNINLSAVLDALASEHLASILAEPNLT 230
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
A+SG++ASF +GG+ V SV +GV L F PTVLS +I +R++ EVSE
Sbjct: 231 AMSGEAASFLAGGEFPIP-VMQDNRQVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSE 289
Query: 339 PVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
+N +P+ R+A T VEL SG + + GL++ + P L +PIL
Sbjct: 290 LSTEGEVKINGMAVPALSTRRASTVVELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPIL 349
Query: 395 GALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
GALFR+S F + ETE+ I TP++V+P +S P + + DA N V +
Sbjct: 350 GALFRSSSFQKRETELVIVVTPYIVRPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQ 409
Query: 454 PKEASEVEGQNYKGAIGFIYK 474
++A G GFI +
Sbjct: 410 GRDAPRASAPGLTGNAGFIIE 430
>gi|148253058|ref|YP_001237643.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
gi|146405231|gb|ABQ33737.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
Length = 496
Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats.
Identities = 127/495 (25%), Positives = 212/495 (42%), Gaps = 38/495 (7%)
Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
T ++ L ++ S+ + + + + ++IS+ +K +++
Sbjct: 4 TWAAVALMAATISIGIYGIGPARSQ--VRVVQDDPVPARQISVTRDKSRTIKLDKPFASA 61
Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
LV P ADV+ S R +Y+ GK +G NV L D + + + + DI ++ +R
Sbjct: 62 LVGAPDIADVLPMSDRIVYIQGKKIGTTNVTLFDQDKNVIGVIGLEVTIDIQNIASKIRS 121
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
IRV ++ +VL G R D+++AV ++ K V+N +
Sbjct: 122 GTNSPGIRVSSSNNQIVLSGEARDAVDAEKAVAIARGMA----TPPEGKDPEKYVINAMR 177
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------- 233
+A QV L+V EV R ++IG +S +
Sbjct: 178 VAASQQVMLRVRFIEVSRQAEREIGVNWFGANASGTRGINTGTGAISQAGPTATSAGVPV 237
Query: 234 -------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
G + G S + ++ ALE+ R LAEP L A+SG +AS
Sbjct: 238 FNTIGTFAGSTLSAPFGVGLFNLANKGGSVDVLITALEKKGLARRLAEPDLVALSGDTAS 297
Query: 287 FTSGGQHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340
F +GG++ +V SS+G T V +GV L F PTVL+ G I LR+ VSE
Sbjct: 298 FLAGGEYPVPSVQSSSGTTPVITVLYKPFGVQLTFVPTVLASGIINLRLTPSVSELDYTN 357
Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ ++ +P+ R+A T +EL G + +AGLL+ D + +P L +P+LG LFR
Sbjct: 358 AVAISGTLVPALSKREARTAIELRDGQSFAIAGLLQSDNLRDVGQLPWLGSVPVLGTLFR 417
Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
++ + ++ET++ + TP LV P A + L+ P D +D F R +
Sbjct: 418 STSYQQKETDLVVIVTPHLVAPAAPGQALATPFDKQLPGNDVDLFLMGRPEVRKQYTD-Y 476
Query: 459 EVEGQNYKGAIGFIY 473
G G G +
Sbjct: 477 LTSGGANVGPYGHMM 491
>gi|167829715|ref|ZP_02461186.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 9]
Length = 510
Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats.
Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 72 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 131
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 132 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 190
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 191 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 250
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 251 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 306
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E
Sbjct: 307 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 366
Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE N +P R+A TTV++ G T + GL+KD+ Q + +P
Sbjct: 367 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 426
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A +
Sbjct: 427 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 486
Query: 447 RVNKIYGPKEAS 458
+ G ++
Sbjct: 487 NMEGRGGLRQHG 498
>gi|134291857|ref|YP_001115626.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
gi|134135046|gb|ABO59371.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
Length = 647
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 121/434 (27%), Positives = 210/434 (48%), Gaps = 18/434 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+
Sbjct: 92 GAVRDSTSVSVPLGKSLLVPMPEAVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 151
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +L + + +I V + T+VL G V Q +Q+A
Sbjct: 152 QGKSGACR-VIDVAVGADAGGLQASLLQLMPAERDIHVSTAAGTIVLAGTVSNSQAAQQA 210
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
V+++ + +G + + V+N+L++ QV L+V +AEV + ++ Q+G +I
Sbjct: 211 VQIARAYSDSAGGGEGGTAKGGGVLNMLSVTSPQQVMLEVKVAEVSKTLINQMGSALNIQ 270
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G S + ++ S V + F A ++ LAEP L I
Sbjct: 271 GGFGSWSGALVSNLLAGVASAA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTI 326
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
SGQ A+F +GG+ SS S ++GV L FTPTVL+ GRI L++ EVS
Sbjct: 327 SGQEATFLAGGKIFIPVPQSSGTGVSTITLQQEEFGVALKFTPTVLANGRISLKVAPEVS 386
Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
E +P R+A TTV++ G + + GL+KD+ + IP +
Sbjct: 387 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGV 446
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
++P+LGALFR++ F ++ TE+ TP LVKP+ D P D +S ++A + +
Sbjct: 447 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQSADQPMPTDSFSKPNEADVYATGNM 506
Query: 449 NKIYGPKEASEVEG 462
+G + +
Sbjct: 507 EGRHGVRRPAAQPA 520
>gi|148976307|ref|ZP_01813031.1| type II and III secretion system protein [Vibrionales bacterium
SWAT-3]
gi|145964401|gb|EDK29656.1| type II and III secretion system protein [Vibrionales bacterium
SWAT-3]
Length = 464
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 114/459 (24%), Positives = 204/459 (44%), Gaps = 44/459 (9%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ + +N+ ++++P + + +S AD + + +FGK G A + ++
Sbjct: 21 ASAASALDVTINEAKMIRLPEKAKSIFISSTHIADYQTLTNTKVMVFGKRAGSATITVLN 80
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ + I + + ++ ++++ E + + L G V + + V L
Sbjct: 81 EQERVIYTNKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSL 140
Query: 164 SETFLS----------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
++ +LS ++Q +S ++++N L + +QV ++V
Sbjct: 141 AKGYLSPIVNQTEQKEGSNTNKNNSSDSALTQSQPTSSKEEELINQLVVTMPNQVNIRVK 200
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
IAEV R++ ++G + G F + S T++
Sbjct: 201 IAEVSRNVSNKLGIKWGSLAGGVGQFYF-------------AKFPNVSSWGKPSITTLVD 247
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
AL + LAEP LTA+SG+ A F GGQ +++ T T + D+GV L+FTPT
Sbjct: 248 ALASNGMMSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTPT 305
Query: 322 VLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
VLS RI L++ EVS I + + PS+ R A TT+EL SG + L GLLK +
Sbjct: 306 VLSQNRISLKVNPEVSNVSIDGQQVIQGANFPSFTTRSASTTIELASGQSFALGGLLKSE 365
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ + +PL+++IP+LG+LFR++ F R ETE+ I T +LV+P + P D
Sbjct: 366 DIEQLQKVPLVAEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMQLPTDGLIPL 425
Query: 438 DDAKAFF-FNRVNKIYGPKEASEVE--GQNYKGAIGFIY 473
D + R+ + + + + G GF Y
Sbjct: 426 SDVERLLALPRIQRKRTHDQDTYTDNQKPRLLGDNGFYY 464
>gi|207728106|ref|YP_002256500.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
gi|206591351|emb|CAQ56963.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
Length = 626
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 116/463 (25%), Positives = 214/463 (46%), Gaps = 42/463 (9%)
Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
+AA + + ++++ + K ++Q+P V++ V +P ++ S
Sbjct: 74 PATAEASRESAAKGPNCTGAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVS 133
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142
P+T+YL G+ VG N+I+ G G +D+ + D L+ TLR + + N++V +
Sbjct: 134 PQTLYLLGQEVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQSTLRTLMPGAKNVQVSAAA 192
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYANSS 180
D++VL G V +Q+ ++++ F+ G A
Sbjct: 193 DSLVLGGSVSDSVQAQKVLDIANAFVMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPR 252
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
S +++N++ + QV L+V +AEV + ++ Q+G ++ +G S+ F+S
Sbjct: 253 SPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNV----NGAFGSWTFGALANFLS 308
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
D + + L A + ++ LAEP+L AISGQ ASF +GG+
Sbjct: 309 GSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVSQG 368
Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGD 347
+ + +GV L FTPTV+ GRI L++ EVSE N
Sbjct: 369 AATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSI 428
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P R+A TT+++ G + + GL+K+++ + IP + ++P++GAL R++ F +++
Sbjct: 429 LPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQ 488
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
TE+ TP LVKP+ P D + + A+ F +
Sbjct: 489 TELVFVVTPHLVKPL-PAQYPLPTDSFGRANPAEIFLNGNMEG 530
>gi|53719431|ref|YP_108417.1| putative fimbriae assembly-related protein [Burkholderia
pseudomallei K96243]
gi|167815898|ref|ZP_02447578.1| RhcC2 [Burkholderia pseudomallei 91]
gi|167845816|ref|ZP_02471324.1| RhcC2 [Burkholderia pseudomallei B7210]
gi|52209845|emb|CAH35817.1| putative fimbriae assembly-related protein [Burkholderia
pseudomallei K96243]
Length = 439
Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats.
Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 27/452 (5%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
AV G +++ ++++P V V+DP ADV V +P+ +++ GK
Sbjct: 2 AVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKA 61
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
G + +G + + +L ++++ D L+ L + + ++++ G V +
Sbjct: 62 GTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSA 121
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
D+ V+ + +L Q + ++N L +A QV L+V I EV R+I +Q+G
Sbjct: 122 ADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLG 171
Query: 215 FQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALER 265
S G+S +S G FSV G R+S + VL AL++
Sbjct: 172 INWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQ 231
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+
Sbjct: 232 EGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLAD 291
Query: 326 GRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ +
Sbjct: 292 NRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDV 351
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
+P L+++P+LG LF + + ++TE+ + TP++V+P +L D +
Sbjct: 352 LAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDI 411
Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
F R I + G GF+Y
Sbjct: 412 EFVLQRSLGIDPLGG----DAPRLAGPAGFVY 439
>gi|258405291|ref|YP_003198033.1| type II and III secretion system protein [Desulfohalobium retbaense
DSM 5692]
gi|257797518|gb|ACV68455.1| type II and III secretion system protein [Desulfohalobium retbaense
DSM 5692]
Length = 455
Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats.
Identities = 119/441 (26%), Positives = 202/441 (45%), Gaps = 22/441 (4%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG--KKISIGLNKVIILQVPVDVQD 68
++ + V +P +A I + + + + K ++L+ ++
Sbjct: 11 LLIAAIMVLTFCVWSIPQEPQAQEFRIIPTKNSADDSIMRSLELTYGKSVVLKSNREITR 70
Query: 69 VLVSDPTKA-DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
V DP D ++ P +YL G AN+IL + +I ++ D++ L+ L
Sbjct: 71 VSEPDPNVLKDPLLIGPNELYLTPAGAGTANLILW-QGKEVSTVYEITVKHDLSRLKQRL 129
Query: 128 RRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
+ N +RV ++++ L G V + + + L+ET+ + G + N
Sbjct: 130 HELFPEENELRVLSTNESITLSGQVSSASALDQIMALAETYAPEGG-----------IKN 178
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
+ + G QV L+V +AEV R L ++G + ++ S F G F+
Sbjct: 179 QVTVKGIHQVMLEVKVAEVSRQSLDRLGINFDLINDAAEFSIGFLGAASAGSSGS-GSFN 237
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
D F + L+R + LAEP+L ++SGQ++SF +GG+ V S G
Sbjct: 238 FWRNGDNVDFNGLFDFLKREGLAKILAEPSLISMSGQTSSFLAGGEIPIPDV-DSDGNIG 296
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVEL 362
V YG+ L FTPTV+S RI +++ VSE +N +P +VR+A+TTVEL
Sbjct: 297 VEFKSYGIELAFTPTVMSKERIAIKVVPVVSELDEASGTVINGAQVPGLKVRRANTTVEL 356
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
G + +AGLL ++ ++ P L +P+LG LF + F +ETE+ I TP LV P+
Sbjct: 357 GDGQSFAIAGLLSENSEETVSKFPGLGDLPVLGPLFTSKSFTSDETELVIMVTPKLVTPL 416
Query: 423 AMRDLSRPDDHYSVEDDAKAF 443
S P D + DA+ +
Sbjct: 417 VAEKQSLPTDFFIHPTDAEFY 437
>gi|167824270|ref|ZP_02455741.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
gi|167919049|ref|ZP_02506140.1| type II/III secretion system protein [Burkholderia pseudomallei
BCC215]
Length = 444
Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats.
Identities = 129/458 (28%), Positives = 213/458 (46%), Gaps = 27/458 (5%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
AV G +++ ++++P V V+DP ADV V +P+ ++
Sbjct: 1 ALALGMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVF 60
Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
+ GK G + +G + + +L ++++ D L+ L + + ++++
Sbjct: 61 VLGKKAGTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVS 120
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G V + D+ V+ + +L Q + ++N L +A QV L+V I EV R+
Sbjct: 121 GRVPSAADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRN 170
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETV 259
I +Q+G S G+S +S G FSV G R+S + V
Sbjct: 171 ITQQLGINWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGV 230
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
L AL++ I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FT
Sbjct: 231 LDALDQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFT 290
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLK 375
PTVL+ RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+
Sbjct: 291 PTVLADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQ 350
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
+ +P L+++P+LG LF + + ++TE+ + TP++V+P +L D +
Sbjct: 351 SKSSDVLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVT 410
Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
F R I + G GF+Y
Sbjct: 411 RPSSDIEFVLQRSLGIDPLGG----DAPRLAGPAGFVY 444
>gi|83719085|ref|YP_442980.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|257139204|ref|ZP_05587466.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|83652910|gb|ABC36973.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
Length = 492
Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats.
Identities = 126/451 (27%), Positives = 210/451 (46%), Gaps = 27/451 (5%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
V +++ ++++P V V+DP ADV V +P+ +++ GK G
Sbjct: 56 VAPRLARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAG 115
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
+ +G + + +L +++ D L+ L ++ + ++++ G V +
Sbjct: 116 TTTLFALGANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAA 175
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
D+ V+ + +L Q + ++N L +A QV L+V I EV R+I +Q+G
Sbjct: 176 DADAVVQTLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGI 225
Query: 216 QHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERA 266
S G+S +S G FSV G +S + VL AL++
Sbjct: 226 NWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQE 285
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+
Sbjct: 286 GLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADN 345
Query: 327 RIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ +
Sbjct: 346 RISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVL 405
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
+P L+++P+LG LF + + ++TE+ + TP++V+P +L D +
Sbjct: 406 AELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIE 465
Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
F R I + G GF+Y
Sbjct: 466 FVLQRSLGIDPLGG----DAPRLTGPAGFVY 492
>gi|254182583|ref|ZP_04889177.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
gi|184213118|gb|EDU10161.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
Length = 690
Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats.
Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQA 212
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388
Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE N +P R+A TTV++ G T + GL+KD+ Q + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A +
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508
Query: 447 RVNKIYGPKEAS 458
+ G ++
Sbjct: 509 NMEGRGGLRQHG 520
>gi|167911033|ref|ZP_02498124.1| type II/III secretion system protein [Burkholderia pseudomallei
112]
Length = 438
Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats.
Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 27/452 (5%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
AV G +++ ++++P V V+DP ADV V +P+ +++ GK
Sbjct: 1 AVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKA 60
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
G + +G + + +L ++++ D L+ L + + ++++ G V +
Sbjct: 61 GTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSA 120
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
D+ V+ + +L Q + ++N L +A QV L+V I EV R+I +Q+G
Sbjct: 121 ADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLG 170
Query: 215 FQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALER 265
S G+S +S G FSV G R+S + VL AL++
Sbjct: 171 INWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQ 230
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+
Sbjct: 231 EGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLAD 290
Query: 326 GRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ +
Sbjct: 291 NRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDV 350
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
+P L+++P+LG LF + + ++TE+ + TP++V+P +L D +
Sbjct: 351 LAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDI 410
Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
F R I + G GF+Y
Sbjct: 411 EFVLQRSLGIDPLGG----DAPRLAGPAGFVY 438
>gi|323493503|ref|ZP_08098625.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
gi|323312326|gb|EGA65468.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
Length = 458
Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats.
Identities = 113/453 (24%), Positives = 194/453 (42%), Gaps = 38/453 (8%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ + +N+ ++ +P D + + +S+ AD + + +FG G A + ++
Sbjct: 21 ASLAAPLEVTINQAKMINLPQDAKSIFISNTHVADYQPMTNTKIMVFGLQAGSATITILN 80
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ + N I + D L + +++++ E + + L G V T + V +
Sbjct: 81 AQERVIYNNKIRVTHDTFELNSLISSQFPEASVKSESLGGKLWLKGSVPTPVMAHSIVNI 140
Query: 164 SETFLSQSGRN----------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
++ +LS + S +++N L + QV ++V IAEV R
Sbjct: 141 AKGYLSPPTAGQSSDSSSDSESSNNTSEQQGDSGNELVNQLVVTMPTQVNIRVRIAEVSR 200
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
++ ++G + S G A + + ++ AL
Sbjct: 201 NVSNKLGIKWGSLESGMGSFLYTKA-------------WDVSSWGKPTLGALIDALASDG 247
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
+ LAEP LTA+SG+ A+F GG+ + T V +GV L+FTP VL P R
Sbjct: 248 TMSILAEPNLTAMSGEEANFLVGGEIPLPLIIGDTAT--VEYKPFGVNLNFTPVVLGPDR 305
Query: 328 IGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
I LR+ EVS + +N PS+ R+A TT+EL SG + L GLL+ +
Sbjct: 306 ISLRVSPEVSSISVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQ 365
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
+P + +P+LG LFR+S + R ETE+ I AT +LV+PV + P D D +
Sbjct: 366 KLPGIGDMPVLGGLFRSSDYQRRETELIIIATAYLVEPVRNDAIPLPTDSLLPLSDLERL 425
Query: 444 F---FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
R ++ G ++ G GF Y
Sbjct: 426 LAIPRKRDKQVKGKATYTDNRAPRLLGDNGFYY 458
>gi|167620125|ref|ZP_02388756.1| type II/III secretion system protein [Burkholderia thailandensis
Bt4]
Length = 427
Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats.
Identities = 125/441 (28%), Positives = 209/441 (47%), Gaps = 27/441 (6%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+++ ++++P V V+DP ADV V +P+ +++ GK G + +G +
Sbjct: 1 PAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGAN 60
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ +L +++ D L+ L ++ + ++++ G V + D+ V+ +
Sbjct: 61 DRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVVQTLK 120
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
+L Q + ++N L +A QV L+V I EV R+I +Q+G S G+S
Sbjct: 121 PYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGN 170
Query: 226 PSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPT 276
+S G FSV G +S + VL AL++ I LAEP
Sbjct: 171 FVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPN 230
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EV
Sbjct: 231 LTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEV 290
Query: 337 SEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
SE + +P+ VR+ DTTVEL SG + + GLL+ + +P L+++P
Sbjct: 291 SEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLP 350
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
+LG LF + + ++TE+ + TP++V+P +L D + F R I
Sbjct: 351 VLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIEFVLQRSLGID 410
Query: 453 GPKEASEVEGQNYKGAIGFIY 473
+ G GF+Y
Sbjct: 411 PLGG----DAPRLTGPAGFVY 427
>gi|237509564|ref|ZP_04522279.1| type II/III secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|235001769|gb|EEP51193.1| type II/III secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 690
Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats.
Identities = 123/430 (28%), Positives = 219/430 (50%), Gaps = 20/430 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQA 212
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388
Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE N +P R+A TTV++ G T + GL+KD+ Q + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A +
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508
Query: 447 RVNKIYGPKE 456
+ G ++
Sbjct: 509 NMEGRGGLRQ 518
>gi|187919324|ref|YP_001888355.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
gi|187717762|gb|ACD18985.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
Length = 595
Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats.
Identities = 122/477 (25%), Positives = 214/477 (44%), Gaps = 45/477 (9%)
Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
+++ A + + ++I + K ++ V V+ V
Sbjct: 78 VHLTIAASGMGPGAASGGAQQGARGPNCSGPVAEHSSVTIPVGKSTMVDVREPVKSRSVG 137
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
+P ++ SP+T+YL G +VG N+I+ G G +D+ + D L+ TL +
Sbjct: 138 NPAIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSC-TIIDVSVGADPGGLQQTLAALMP 196
Query: 133 DS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY--------------- 176
+ I+V+ +DT+VL G V ++R +EL+ F+++
Sbjct: 197 EETGIQVKAAADTLVLTGTVSDAVKAERVLELARAFVARPTAALQGGAPMGSGPLPVGAA 256
Query: 177 -----------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
+S ++++N++++A QV L+V +AEV + ++ Q+G +I G
Sbjct: 257 PRAMGMPAPTLGGASGERIINMMHVAAPQQVMLEVKVAEVSKTLIDQLGVAANINGGIGS 316
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
S AD ++S G + + A + ++ LAEP L AISGQ A
Sbjct: 317 WSFGLLAD----YLSGGLSALTASKANNSPLRAAIDAQKTDQLVKILAEPNLMAISGQEA 372
Query: 286 SFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
SF +GG+ S + + YGV L FTPTVL GRI L++ EVSE
Sbjct: 373 SFLAGGKVYIPVPQSNGANGTTIVLQEEQYGVGLTFTPTVLEGGRINLKVSPEVSELSST 432
Query: 343 ---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
N +P R+A TT+++ G + + GLLK +I +G+P +++P+
Sbjct: 433 GVVVSAGNSNNQTILPLITTRRASTTLQVFDGQSFAIGGLLKSNITGSIKGLPGAAELPV 492
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
LGALFR++ + +++TE+ TP L KP+ + P DH+ +A + +
Sbjct: 493 LGALFRSTSYEQDKTELVFVVTPRLAKPL-PQHYPLPTDHFGDASEANVYLTGHMEG 548
>gi|167738675|ref|ZP_02411449.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
Length = 434
Score = 300 bits (767), Expect = 5e-79, Method: Composition-based stats.
Identities = 127/446 (28%), Positives = 211/446 (47%), Gaps = 27/446 (6%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
G +++ ++++P V V+DP ADV V +P+ +++ GK G +
Sbjct: 3 ARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLF 62
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+G + + +L ++++ D L+ L + + ++++ G V + D+
Sbjct: 63 ALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAV 122
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
V+ + +L Q + ++N L +A QV L+V I EV R+I +Q+G S
Sbjct: 123 VQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSAL 172
Query: 221 GSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRT 271
G+S +S G FSV G R+S + VL AL++ I
Sbjct: 173 GASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITM 232
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+
Sbjct: 233 LAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLK 292
Query: 332 IQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ + +P
Sbjct: 293 VRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPG 352
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
L+++P+LG LF + + ++TE+ + TP++V+P +L D + F R
Sbjct: 353 LARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQR 412
Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIY 473
I + G GF+Y
Sbjct: 413 SLGIDPLGG----DAPRLAGPAGFVY 434
>gi|167744175|ref|ZP_02416949.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 14]
Length = 439
Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats.
Identities = 123/438 (28%), Positives = 219/438 (50%), Gaps = 20/438 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 6 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 65
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 66 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 124
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 125 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 184
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 185 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 240
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E
Sbjct: 241 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 300
Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE N +P R+A TTV++ G T + GL+KD+ Q + +P
Sbjct: 301 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 360
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A +
Sbjct: 361 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 420
Query: 447 RVNKIYGPKEASEVEGQN 464
+ G ++
Sbjct: 421 NMEGRGGLRQHGAAPAAA 438
>gi|260463894|ref|ZP_05812090.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
gi|259030269|gb|EEW31549.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
Length = 481
Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats.
Identities = 123/478 (25%), Positives = 218/478 (45%), Gaps = 26/478 (5%)
Query: 1 MRYL-----QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN 55
MR L + F +++ + + ++ A+ ++ +S + I +
Sbjct: 3 MRTLYGMTGRSCFVRALAMAVSLAAGAMLAFAGAARADNDIVYVSATKNA---SIKVAKG 59
Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
K + +++ DP A+V + ++ Y+ G N+G + L + + +DI
Sbjct: 60 KPKTIITSAAFYQIVIGDPEIANVNPLTDKSFYVLGNNLGTTGIALFDDKKQLVGTVDIE 119
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
+ D L T+R + D+ I+V + VVL G +++A +++ F
Sbjct: 120 VTLDTDELANTIRASVPDAKIKVGSANGRVVLSGEADDAVAAEKANKIATRFSGN----- 174
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
++V+N +NI+ QV L V E+ R + +G ++S + + + + G
Sbjct: 175 ------EEVINSVNISSSQQVQLNVRFVEINRQAGQDLGAKYSANFAYGFGGRDVSLEPG 228
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ G+ + + + S + + ALE R LAEP L A SG++ASF +GG+
Sbjct: 229 TVPAAGTGEIIGRLLSNGVSIDIAIKALEERGLARRLAEPNLIARSGETASFLAGGEFPI 288
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSY 351
VS G SV+ YGV L F PTVL G + L I EVS + +P +
Sbjct: 289 P-VSEENGKISVSYKKYGVSLDFKPTVLKDGLVSLDIAPEVSSIDASASYNIGNISVPGF 347
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
VR+A T+V+L +G + ++AGLL+ IP L K+P+LGALF + + R ET++
Sbjct: 348 IVRRARTSVDLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPVLGALFSSKSYQRRETDLV 407
Query: 412 IAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
I TP+LVKPV + ++ P + +A +F N ++ G + + A
Sbjct: 408 IIVTPYLVKPVDPSKKMAEPTNGTQPASNAD-YFLNNTEEVKGSDTNRALAMADGGAA 464
>gi|167821374|ref|ZP_02453054.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 91]
Length = 494
Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats.
Identities = 123/437 (28%), Positives = 219/437 (50%), Gaps = 20/437 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 63 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 122
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 123 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 181
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 182 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 241
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 242 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 297
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E
Sbjct: 298 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 357
Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE N +P R+A TTV++ G T + GL+KD+ Q + +P
Sbjct: 358 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 417
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A +
Sbjct: 418 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 477
Query: 447 RVNKIYGPKEASEVEGQ 463
+ G ++
Sbjct: 478 NMEGRGGLRQHGAAPAA 494
>gi|186474103|ref|YP_001861445.1| type II and III secretion system protein [Burkholderia phymatum
STM815]
gi|184196435|gb|ACC74399.1| type II and III secretion system protein [Burkholderia phymatum
STM815]
Length = 700
Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats.
Identities = 123/468 (26%), Positives = 218/468 (46%), Gaps = 47/468 (10%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
I + ++I + K ++ V V+ V +P+ ++ SP+T+YL G +VG N+I
Sbjct: 109 TGAIADHQTVTIPIGKSTMVNVRESVKTRTVGNPSIVQAMLVSPQTLYLLGTDVGTTNMI 168
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQR 159
+ G G +D+ + D L+ TL + + ++V+ +DT+VL G V ++R
Sbjct: 169 VQGRSGSC-TVIDVAVGADPGGLQQTLAVLMPEESGVQVKAAADTLVLTGTVSDSVKAER 227
Query: 160 AVELSETFLSQSG--------------------------RNQYANSSSKKVMNLLNIAGE 193
VEL+ ++++ N ++++++N++++A
Sbjct: 228 IVELARAYVARQAAPVPVAAPANAGGAQGGAMIPAVLKPAGASGNGNNERIVNMMHVAAP 287
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV L+V +AEV + ++ Q+G + G + S++ F+S G + +
Sbjct: 288 QQVMLEVKVAEVSKTLIDQLGMA----ANIQGGTGSWSFGLLADFLSGGMGALLGSKANN 343
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTH 310
+ A + ++ LAEPTL AISGQ ASF +GG+ S+ +
Sbjct: 344 KPLNFAIDAQKTDQLVKVLAEPTLMAISGQEASFLAGGRVFIPVPQSNGAAGSTIILQEE 403
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVE 361
+GV L FTPTVL GRI L++ EVSE +P R+A TT++
Sbjct: 404 TFGVGLTFTPTVLDNGRINLKVSPEVSELSPTGVAVTAGTVSTTAVLPLITTRRASTTLQ 463
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G + + GL+K ++ +G+P L ++P+LGALFR++ F ++TE+ TP L KP
Sbjct: 464 VYDGQSFAIGGLMKSNVTGTLKGLPGLGEVPVLGALFRSTNFQEDKTELVFVVTPRLAKP 523
Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
+ ++ P DH+ +A FF + +A GA
Sbjct: 524 L-PQNYPLPTDHFGKVTEAGVFFTGNMEG--KKPQAPAEAVPPSTGAA 568
>gi|76819084|ref|YP_336469.1| phospholipid-binding domain-containing protein [Burkholderia
pseudomallei 1710b]
gi|254264517|ref|ZP_04955382.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
gi|76583557|gb|ABA53031.1| Putative phospholipid-binding domain family [Burkholderia
pseudomallei 1710b]
gi|254215519|gb|EET04904.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
Length = 690
Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats.
Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388
Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE N +P R+A TTV++ G T + GL+KD+ Q + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A +
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508
Query: 447 RVNKIYGPKEAS 458
+ G ++
Sbjct: 509 NMEGRGGLRQHG 520
>gi|126456485|ref|YP_001076989.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|242311194|ref|ZP_04810211.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
gi|126230253|gb|ABN93666.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|242134433|gb|EES20836.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
Length = 690
Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats.
Identities = 123/430 (28%), Positives = 219/430 (50%), Gaps = 20/430 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388
Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE N +P R+A TTV++ G T + GL+KD+ Q + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A +
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508
Query: 447 RVNKIYGPKE 456
+ G ++
Sbjct: 509 NMEGRGGLRQ 518
>gi|167841773|ref|ZP_02468457.1| type II/III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 484
Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats.
Identities = 129/438 (29%), Positives = 221/438 (50%), Gaps = 26/438 (5%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 15 GEMRESTNVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 74
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 75 QGKSGAC-QIIDVAVGADADGLQTSLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 133
Query: 161 VELSETFLSQSGRNQYAN--------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
V +++ + ++ N SS V+N+L + QV L+V +AEV + ++ Q
Sbjct: 134 VAIAKAYSDRTNAGAAGNGNGNGGGGSSRADVLNMLTVTSPQQVMLEVKVAEVSKTLINQ 193
Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
+G +I G S+ ++ G V ++ + A + ++ L
Sbjct: 194 MGSAVNI----QGGFGSWTGALMTSLLTGVGSGIVASKSNKLPLSGAIDAQDTDQPVKIL 249
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIG 329
AEP L ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI
Sbjct: 250 AEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRIS 309
Query: 330 LRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
L++ EVSE N +P R+A TTV++ G T + GL+KD+ Q
Sbjct: 310 LKVAPEVSELSPTGVTLSASNVGNVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQG 369
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
+ +P + ++P+LGALFR++ F ++ TE+ TP LVKP+ D+ P D ++ ++A
Sbjct: 370 TLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLDTADVPLPTDSFTKPNEA 429
Query: 441 KAFFFNRVNKIYGPKEAS 458
+ + G ++
Sbjct: 430 DVYATGNMEGRGGLRQHG 447
>gi|296156489|ref|ZP_06839327.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
gi|295893088|gb|EFG72868.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
Length = 599
Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats.
Identities = 121/485 (24%), Positives = 216/485 (44%), Gaps = 46/485 (9%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAA-VINISDVEIGKGKKISIGLNKVIILQVPVD 65
T + S+ L + + A + + ++I + K ++ V
Sbjct: 75 TVASNGSVHLTIAASGMGPGAYSGGAQQGGRGPNCTGPVAEHSSVTIPVGKSAMVDVREP 134
Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
V+ V +P+ ++ SP+T+YL G +VG N+I+ G G +D+ + D L+
Sbjct: 135 VKSRTVGNPSIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSC-TIIDVSVGADPGGLQQ 193
Query: 126 TLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY-------- 176
TL + + I+V+ +DT+VL G V + R +EL+ F+++
Sbjct: 194 TLAALMPEETGIQVKAAADTLVLTGTVSDAVKADRVLELARAFVARPTTALQGGAPMGSG 253
Query: 177 ------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ ++++N++++A QV L+V +AEV + ++ Q+G +
Sbjct: 254 PLPVGAAPRAMGMPAPSLGGAGGERIINMMHVAAPQQVMLEVKVAEVSKTLIDQLGVAAN 313
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G S AD ++S G + + + A + ++ LAEP L
Sbjct: 314 INGGIGSWSFGLLAD----YLSGGLSALTASKANNSPLKAAIDAQKTDQLVKILAEPNLM 369
Query: 279 AISGQSASFTSGGQHLYKTVS---SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
AISGQ ASF +GG+ S + YGV L FTPTVL GRI L++ E
Sbjct: 370 AISGQEASFLAGGKVYIPVPQSNGSGGTTIVLQEEQYGVGLTFTPTVLEGGRINLKVSPE 429
Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE +P R+A TT+++ G + + GLLK ++ +G+P
Sbjct: 430 VSELSSTGVVVSAGNSNTTSILPLITTRRASTTLQVFDGQSFAIGGLLKSNVTGSIKGLP 489
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+++P+LGALFR++ + +++TE+ TP L KP+ + P D++ +A +
Sbjct: 490 GAAELPVLGALFRSTSYEQDKTELVFVVTPRLAKPL-PQHYPLPTDNFGDASEANVYLTG 548
Query: 447 RVNKI 451
+
Sbjct: 549 HMEGT 553
>gi|261251598|ref|ZP_05944172.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
gi|260938471|gb|EEX94459.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
Length = 457
Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats.
Identities = 117/449 (26%), Positives = 199/449 (44%), Gaps = 37/449 (8%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
+ + +N+ ++ +P D + + +S+ AD + + +FG G A + ++
Sbjct: 24 AAPLEVNINEAKMINLPQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQE 83
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
+ + N I + D L+ + ++++ E + + L G V T + V +++
Sbjct: 84 RVIYNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKG 143
Query: 167 FLS---------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+LS S + +S +++N L + QV ++V IAEV R++
Sbjct: 144 YLSPVIAPQQSENGSTSSDSSTQNSGSDNSDELVNQLMVTMPTQVNIRVRIAEVSRNVSN 203
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
++G + + G A + + ++ AL +
Sbjct: 204 KLGIKWGSLQAGMGSFLYTKA-------------WDVSSWGKPTLGALVDALASDGTMSI 250
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LAEP LTA+SG+ ASF GG+ ++ T V +GV L+FTP VL P RI LR
Sbjct: 251 LAEPNLTAMSGEDASFLVGGEIPLPLINGDTAT--VEYKPFGVNLNFTPVVLGPDRISLR 308
Query: 332 IQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ EVS + +N PS+ R+A TT+EL SG + L GLL+ + +P
Sbjct: 309 VSPEVSSVSVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQKLPG 368
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF--- 444
IPILG LFR+S + R+ETE+ I AT +LV+PV L P D+ D +
Sbjct: 369 AGDIPILGGLFRSSEYQRKETELIIIATAYLVEPVRNDALPLPTDNLLPLSDLERLLAIP 428
Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
+R ++ G ++ G GF Y
Sbjct: 429 RSRGKQVKGKDTYTDNRAPRLLGDNGFYY 457
>gi|167851182|ref|ZP_02476690.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei B7210]
Length = 449
Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats.
Identities = 125/445 (28%), Positives = 220/445 (49%), Gaps = 20/445 (4%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
A E+ + +S+ L K ++L + V++ + +P A + SPRT+Y
Sbjct: 1 AAAAVPLRGPSCVGEMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLY 60
Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147
L G +VG N+I+ G G +D+ + D L+ +LR+ + +IRV +DT+VL
Sbjct: 61 LVGMSVGTTNMIVQGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVL 119
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEV 205
G V + Q +Q+AV +++ + +++ + + V+N+L + QV L+V +AEV
Sbjct: 120 AGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEV 179
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ ++ Q+G +I G + + ++ G ++ + A
Sbjct: 180 SKTLINQMGSAVNIQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNT 235
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTV 322
++ LAEP L ISGQ A+F +GG+ SS T ++ ++GV L FTPTV
Sbjct: 236 DQPVKILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTV 295
Query: 323 LSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
LS GRI L++ EVSE N +P R+A TTV++ G T + GL
Sbjct: 296 LSNGRISLKVAPEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGL 355
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
+KD+ Q + +P + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D
Sbjct: 356 IKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDS 415
Query: 434 YSVEDDAKAFFFNRVNKIYGPKEAS 458
++ ++A + + G ++
Sbjct: 416 FTKPNEADVYATGNMEGRGGLRQHG 440
>gi|302381756|ref|YP_003817579.1| type II and III secretion system protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192384|gb|ADK99955.1| type II and III secretion system protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 520
Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats.
Identities = 141/508 (27%), Positives = 238/508 (46%), Gaps = 68/508 (13%)
Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
LP A + + + I++ + +P D +DV+VS+P A+ VHSP
Sbjct: 23 TLPSAVLAQDHAGSQTVAAGSGPRLINLPRGTSFAVDLPADARDVIVSNPAVAEANVHSP 82
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
R + + G G+ + + + G+ +L L + ++ + L+ TL R + + E V+D+
Sbjct: 83 RRITVIGIAPGETDAVFLDAAGRSILTLRVRVDAGVTALQDTLSRVAPGAQVHAEAVNDS 142
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
+VL G+V + S++ +++ F+ S+ +KV+N+L IAG DQVTLKV I E
Sbjct: 143 IVLTGLVTSAAQSEQVAQVARAFV----------SAPEKVLNMLTIAGSDQVTLKVRIIE 192
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEGGDFSVKGVLDRFSF--- 256
V+R+ +KQ+GF + G ++ + G + + F
Sbjct: 193 VQRNAIKQLGFDTAAALGRVGDTQFLLSQAASFGVNGSLLGGISAGVSRNTTQNFQLQGP 252
Query: 257 -----------------------------------------ETVLHALERATAIRTLAEP 275
++ A ER IRTLAEP
Sbjct: 253 CGPGFPADSLCPFTVDGPEDASNWDTAQPGTGPGSDDLNKGNAMIKAFERVGLIRTLAEP 312
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
LT+++G+SASF +GG+ T G ++ YGV L F P VLS GRI L+I E
Sbjct: 313 NLTSVNGESASFLAGGEFPVPTGRDRDGNVTIEFKPYGVSLGFRPIVLSEGRISLQISAE 372
Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE A ++ VR+ TVE+PSGG++++AGLL++ +Q + +P
Sbjct: 373 VSELTQTGGITLGAGTSTALNIAGLNVRRVQNTVEIPSGGSMMIAGLLQESTRQAIDSLP 432
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
L +P+LG LFR+ + ETE+ + P++V P + L P D + DA+ FF
Sbjct: 433 GLGGLPVLGQLFRSRDYLSGETELVVIVEPYIVTPTSPNRLQTPADGLRIATDAQTIFFG 492
Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474
++N+ YG ++ ++G +G++ +
Sbjct: 493 QLNQAYGSPAPTDTASAGWQGPVGYVIE 520
>gi|167916476|ref|ZP_02503567.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 112]
Length = 452
Score = 298 bits (764), Expect = 9e-79, Method: Composition-based stats.
Identities = 124/445 (27%), Positives = 220/445 (49%), Gaps = 20/445 (4%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
A E+ + +S+ L K +++ + V++ + +P A + SPRT+Y
Sbjct: 1 AAAAVPLRGPSCVGEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLY 60
Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147
L G +VG N+I+ G G +D+ + D L+ +LR+ + +IRV +DT+VL
Sbjct: 61 LVGMSVGTTNMIVQGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVL 119
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEV 205
G V + Q +Q+AV +++ + +++ + + V+N+L + QV L+V +AEV
Sbjct: 120 AGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEV 179
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ ++ Q+G +I G + + ++ G ++ + A
Sbjct: 180 SKTLINQMGSAVNIQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNT 235
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTV 322
++ LAEP L ISGQ A+F +GG+ SS T ++ ++GV L FTPTV
Sbjct: 236 DQPVKILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTV 295
Query: 323 LSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
LS GRI L++ EVSE N +P R+A TTV++ G T + GL
Sbjct: 296 LSNGRISLKVAPEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGL 355
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
+KD+ Q + +P + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D
Sbjct: 356 IKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDS 415
Query: 434 YSVEDDAKAFFFNRVNKIYGPKEAS 458
++ ++A + + G ++
Sbjct: 416 FTKPNEADVYATGNMEGRGGLRQHG 440
>gi|300704930|ref|YP_003746533.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
gi|299072594|emb|CBJ43944.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
Length = 622
Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats.
Identities = 117/463 (25%), Positives = 215/463 (46%), Gaps = 42/463 (9%)
Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
A +AA + + ++++ + K ++Q+P V++ V +P ++ S
Sbjct: 74 AATAEASRESAAKGPNCTGAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVS 133
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142
P+T+YL G+ VG N+I+ G G +D+ + D L+ TLR + + N++V +
Sbjct: 134 PQTLYLLGQEVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQSTLRTLVPGAKNVQVSAAA 192
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYANSS 180
D++VL G V +Q+ ++++ F+ G A
Sbjct: 193 DSLVLSGSVSDSVQAQKVLDIANAFVMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPR 252
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
S +++N++ + QV L+V +AEV + ++ Q+G ++ +G S+ F+S
Sbjct: 253 SPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNV----NGAFGSWTFGALANFLS 308
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
D + + L A + ++ LAEP+L AISGQ ASF +GG+
Sbjct: 309 GSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVAQG 368
Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGD 347
+ + +GV L FTPTV+ GRI L++ EVSE N
Sbjct: 369 AATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSI 428
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P R+A TT+++ G + + GL+K+++ + IP + ++P++GAL R++ F +++
Sbjct: 429 LPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQ 488
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
TE+ TP LVKP+ P D + + A+ F +
Sbjct: 489 TELVFVVTPRLVKPL-PAQYPLPTDSFGQANPAEIFLNGNMEG 530
>gi|167894387|ref|ZP_02481789.1| type II/III secretion system protein [Burkholderia pseudomallei
7894]
Length = 426
Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats.
Identities = 126/437 (28%), Positives = 210/437 (48%), Gaps = 27/437 (6%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+++ ++++P V V+DP ADV V +P+ +++ GK G + +G + + +
Sbjct: 4 LAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTI 63
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
L ++++ D L+ L + + ++++ G V + D+ V+ + +L
Sbjct: 64 LRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLR 123
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
Q + ++N L +A QV L+V I EV R+I +Q+G S G+S
Sbjct: 124 QQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNFVGG 173
Query: 230 FAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAI 280
+S G FSV G R+S + VL AL++ I LAEP LTAI
Sbjct: 174 LFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAI 233
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
SGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE
Sbjct: 234 SGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEID 293
Query: 341 IGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG
Sbjct: 294 PTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGK 353
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
LF + + ++TE+ + TP++V+P +L D + F R I
Sbjct: 354 LFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGIDPLGG 413
Query: 457 ASEVEGQNYKGAIGFIY 473
+ G GF+Y
Sbjct: 414 ----DAPRLAGPAGFVY 426
>gi|167574003|ref|ZP_02366877.1| type II/III secretion system protein [Burkholderia oklahomensis
C6786]
Length = 548
Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats.
Identities = 124/429 (28%), Positives = 216/429 (50%), Gaps = 22/429 (5%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 90 GEMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIV 149
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V Q +Q+A
Sbjct: 150 QGRSGAC-QIIDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAGNVSDAQAAQQA 208
Query: 161 VELSETFLSQSGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
V +++ + ++ A + + V+N+L + QV L+V +AEV + ++ Q+G
Sbjct: 209 VAIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMGSA 268
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
+I G + + G+ ++ F+ L A ++ LAEP
Sbjct: 269 INIQGGFGSWTGMLVSSLLAGV----GNGIAASKSNKLPFKAALDAQNTDQPVKILAEPR 324
Query: 277 LTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
L ISGQ A+F +GG+ + ++ + T ++ ++GV L FTPTVLS GRI L++
Sbjct: 325 LVTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLKVA 384
Query: 334 TEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
EVSE +P R+A TTV++ G T + GL+KD+ Q
Sbjct: 385 PEVSELSPTGVTLSATNVSGVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLRA 444
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
+P + +IP+LGALFR++ F ++ TE+ TP LVKP+ D+ P D ++ ++ +
Sbjct: 445 LPGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEVDVYA 504
Query: 445 FNRVNKIYG 453
+ G
Sbjct: 505 TGNMEGRGG 513
>gi|53723207|ref|YP_112192.1| outer membrane protein [Burkholderia pseudomallei K96243]
gi|52213621|emb|CAH39675.1| putative outer membrane protein [Burkholderia pseudomallei K96243]
Length = 690
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388
Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE N +P R+A TTV++ G T + GL+KD+ Q + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A +
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508
Query: 447 RVNKIYGPKEAS 458
+ G ++
Sbjct: 509 NMEGRGGLRQHG 520
>gi|326388864|ref|ZP_08210446.1| type II and III secretion system protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326206464|gb|EGD57299.1| type II and III secretion system protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 565
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 131/482 (27%), Positives = 220/482 (45%), Gaps = 38/482 (7%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
+ L ++ P + P ++ + ++I + + ++ +P ++
Sbjct: 33 AILPGLPAALSAATPHMKAKPRALAVLHTTPPMTPGVTAPARSLAISIGRGELVTLPGNM 92
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
DV V++ ADV V S +Y+FGK G+ V G + + +I + ++ ++
Sbjct: 93 TDVFVANENIADVQVKSGNQLYIFGKAGGETTVYASNGRGDVIWSANIRVGNNLDSIDQM 152
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L + +++I +++TV+L G V +D+ A L + F+ + V++
Sbjct: 153 LHMAMPEAHIATATMNNTVLLTGTVSAPEDAAEAERLVKAFVGEKT----------NVIS 202
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------- 233
L +A QV L V AEV R + + I + ++SG
Sbjct: 203 RLKMATPLQVNLHVKFAEVSRTLTRSIQSNWTTADATSGLKFGLGQGRSFFPQYVPGGPL 262
Query: 234 ----------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
VS G ++ + SF L E + TLAEP LTA+SG+
Sbjct: 263 GMGTATTTGATAVSPVSTGTTLALASKVFGLSFLAALDLAESIGLVSTLAEPNLTALSGE 322
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340
+A F +GG++ VSS G V +YGV L +TPTVL+ GRI LR++ EVSE
Sbjct: 323 TAEFLAGGEYPIP-VSSGLGTVPVQYKNYGVSLAYTPTVLANGRISLRVRPEVSELSSDG 381
Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ +N +P+ VR+A+TT+EL SG + ++AGLLK+ Q +P +PILG+LFR
Sbjct: 382 AVSLNGYSVPALSVRRAETTIELGSGQSFMIAGLLKNSSQNTIAKMPGAGDLPILGSLFR 441
Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
++ + R ETE+ I TP+LV PV ++ P D + K N + E +
Sbjct: 442 STSYQRGETELVIIVTPYLVNPVDPSEIHLPTDGFKSAGALKQILGNLESDGVVDGERPK 501
Query: 460 VE 461
Sbjct: 502 PT 503
>gi|217424167|ref|ZP_03455666.1| outer membrane protein [Burkholderia pseudomallei 576]
gi|217392632|gb|EEC32655.1| outer membrane protein [Burkholderia pseudomallei 576]
Length = 673
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGVGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388
Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE N +P R+A TTV++ G T + GL+KD+ Q + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A +
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508
Query: 447 RVNKIYGPKEAS 458
+ G ++
Sbjct: 509 NMEGRGGLRQHG 520
>gi|254192422|ref|ZP_04898861.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
gi|169649180|gb|EDS81873.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
Length = 690
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 123/430 (28%), Positives = 219/430 (50%), Gaps = 20/430 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388
Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE N +P R+A TTV++ G T + GL+KD+ Q + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A +
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508
Query: 447 RVNKIYGPKE 456
+ G ++
Sbjct: 509 NMEGRGGLRQ 518
>gi|126445563|ref|YP_001064076.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
gi|126225054|gb|ABN88559.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
Length = 690
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 123/436 (28%), Positives = 218/436 (50%), Gaps = 24/436 (5%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQA 212
Query: 161 VELSETFLSQSGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
V +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+G
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGNGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMG 272
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+I G + + ++ G ++ + A ++ LAE
Sbjct: 273 SAVNIQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAE 328
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
P L ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L+
Sbjct: 329 PRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLK 388
Query: 332 IQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ EVSE N +P R+A TTV++ G T + GL+KD+ Q
Sbjct: 389 VAPEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTL 448
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
+ +P + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A
Sbjct: 449 KALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADV 508
Query: 443 FFFNRVNKIYGPKEAS 458
+ + G ++
Sbjct: 509 YATGNMEGRGGLRQHG 524
>gi|167725247|ref|ZP_02408483.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei DM98]
Length = 448
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 124/445 (27%), Positives = 220/445 (49%), Gaps = 20/445 (4%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
A E+ + +S+ L K +++ + V++ + +P A + SPRT+Y
Sbjct: 1 AAAAVPLRGPNCVGEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLY 60
Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147
L G +VG N+I+ G G +D+ + D L+ +LR+ + +IRV +DT+VL
Sbjct: 61 LVGMSVGTTNMIVQGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVL 119
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEV 205
G V + Q +Q+AV +++ + +++ + + V+N+L + QV L+V +AEV
Sbjct: 120 AGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEV 179
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ ++ Q+G +I G + + ++ G ++ + A
Sbjct: 180 SKTLINQMGSAVNIQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNT 235
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTV 322
++ LAEP L ISGQ A+F +GG+ SS T ++ ++GV L FTPTV
Sbjct: 236 DQPVKILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTV 295
Query: 323 LSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
LS GRI L++ EVSE N +P R+A TTV++ G T + GL
Sbjct: 296 LSNGRISLKVAPEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGL 355
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
+KD+ Q + +P + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D
Sbjct: 356 IKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDS 415
Query: 434 YSVEDDAKAFFFNRVNKIYGPKEAS 458
++ ++A + + G ++
Sbjct: 416 FTKPNEADVYATGNMEGRGGLRQHG 440
>gi|86360580|ref|YP_472468.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
gi|86284682|gb|ABC93741.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
Length = 495
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 125/495 (25%), Positives = 218/495 (44%), Gaps = 35/495 (7%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59
M +R S+ ++ S A +A + +G+ + +++ N+ +
Sbjct: 1 MANGRRRIARTKSLAALAAVFSACVCLGPGFAGSASAQEKSITLGESVQHVTLPPNETLT 60
Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
L D+++ DVV S +++++ GK G N+ + G D + +DI + D
Sbjct: 61 LNTGQPFGDLVIGSADMIDVVPLSDKSLFIRGKKTGATNISVYGDDKSLLGVIDIRVASD 120
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +R + +RV +D + L G VR + QR +E+++++
Sbjct: 121 FSEVASAIRSAAPSARVRVINSNDRIRLTGFVRDGIELQRVMEIAQSY------------ 168
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------- 232
S + V+N L ++ QV L+V + E R + +G S G+++ K+ +
Sbjct: 169 SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGYGNNNRIGKATTSQGIAVDD 228
Query: 233 -----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ G + + + V++ALE+ +R LA+P L A+S
Sbjct: 229 GSLARTLLDPKGAATGALPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMS 288
Query: 282 GQSASFTSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
G +ASF +GG+ T + +T AT +GV L F P VL G I L I+ EVSE
Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGLINLEIEPEVSEI 348
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+N P + R A TTV L G + LAGLL+ + + +P L +IP+LGALFR
Sbjct: 349 DPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQLPGLGQIPVLGALFR 408
Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
++ F ++E+++ I TP +V+P DL P D +D + F + +
Sbjct: 409 STSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALGVLE-VDKDMLRR 467
Query: 459 EVEGQNYKGAIGFIY 473
G G G
Sbjct: 468 FRNGVGVTGPYGHRL 482
>gi|134281876|ref|ZP_01768583.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
gi|134246938|gb|EBA47025.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
Length = 685
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 124/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K ++L + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 94 GEMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388
Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE N +P R+A TTV++ G T + GL+KD+ Q + +P
Sbjct: 389 VSELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A +
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508
Query: 447 RVNKIYGPKEAS 458
+ G ++
Sbjct: 509 NMEGRGGLRQHG 520
>gi|167908129|ref|ZP_02495334.1| type II/III secretion system protein [Burkholderia pseudomallei
NCTC 13177]
Length = 460
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 124/430 (28%), Positives = 219/430 (50%), Gaps = 20/430 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K ++L + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 19 GEMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 78
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 79 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 137
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 138 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 197
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 198 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 253
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E
Sbjct: 254 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 313
Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE N +P R+A TTV++ G T + GL+KD+ Q + +P
Sbjct: 314 VSELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 373
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A +
Sbjct: 374 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 433
Query: 447 RVNKIYGPKE 456
+ G ++
Sbjct: 434 NMEGRGGLRQ 443
>gi|312883754|ref|ZP_07743473.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368503|gb|EFP96036.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 460
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 115/452 (25%), Positives = 196/452 (43%), Gaps = 40/452 (8%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
+ + + +N+ ++ + D + + +S+ AD + + +FG G A + ++
Sbjct: 24 AEPLEVNINEAKMINLSQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQE 83
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
+ + N I + D L+ + ++++ E + + L G V T + V +++
Sbjct: 84 RVIYNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKG 143
Query: 167 FLSQSGRNQY---------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+LS N N + +++N L + QV ++V IAEV R++
Sbjct: 144 YLSPVTANAQSEKGSTSPDSSTHSRGNENEDELINQLVVTMPTQVNIRVRIAEVSRNVSN 203
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
++G + G G A + + ++ AL +
Sbjct: 204 KLGIKWGSVGEGIGSFLYTKA-------------WDVSSWGKPTLSGLVDALASDGTMSI 250
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LAEP LTA+SG+ ASF GG+ ++ T V +GV L+FTP VL P RI LR
Sbjct: 251 LAEPNLTAMSGEEASFLVGGEIPLPLINGDTAT--VEYKPFGVNLNFTPVVLGPDRISLR 308
Query: 332 IQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ EVS +N PS+ R+A TT+EL SG + L GLL+ + +P
Sbjct: 309 VSPEVSSVSVSNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQKLPG 368
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF--- 444
IPILG LFR++ + R+ETE+ I AT +LV+PV L P D+ D +
Sbjct: 369 AGDIPILGGLFRSNEYQRKETELIIIATAYLVEPVRNDTLPLPTDNLLPRSDLERLLVAF 428
Query: 445 ---FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
+ ++ G ++ G GF Y
Sbjct: 429 PRKRGKQKQVKGKDTYTDNRAPRLLGDNGFYY 460
>gi|167617230|ref|ZP_02385861.1| Bacterial type II and III secretion system protein domain protein
[Burkholderia thailandensis Bt4]
Length = 468
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 124/433 (28%), Positives = 216/433 (49%), Gaps = 21/433 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 15 GAMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 74
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 75 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 133
Query: 161 VELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
V +++ + ++ V+N+L + QV L+V +AEV + ++ Q+G
Sbjct: 134 VAIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAV 193
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
++ G + + ++ G+ ++ + A ++ LAEP L
Sbjct: 194 NLQGGFGSWTGALVTSL----LTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRL 249
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334
ISGQ A+F +GG+ SS TS ++GV L FTPTVLS GRI L++
Sbjct: 250 VTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAP 309
Query: 335 EVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
EVSE +P R+A TTV++ G T + GL+KD+ Q + +
Sbjct: 310 EVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKAL 369
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
P + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A +
Sbjct: 370 PGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYAT 429
Query: 446 NRVNKIYGPKEAS 458
+ G ++
Sbjct: 430 GNMEGRGGLRQHG 442
>gi|167579115|ref|ZP_02371989.1| Bacterial type II and III secretion system protein domain protein
[Burkholderia thailandensis TXDOH]
Length = 462
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 124/433 (28%), Positives = 216/433 (49%), Gaps = 21/433 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 15 GAMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 74
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 75 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 133
Query: 161 VELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
V +++ + ++ V+N+L + QV L+V +AEV + ++ Q+G
Sbjct: 134 VAIAKAYSDRTNAAALGGGGGGPRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAV 193
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
++ G + + ++ G+ ++ + A ++ LAEP L
Sbjct: 194 NLQGGFGSWTGALVTSL----LTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRL 249
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334
ISGQ A+F +GG+ SS TS ++GV L FTPTVLS GRI L++
Sbjct: 250 VTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAP 309
Query: 335 EVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
EVSE +P R+A TTV++ G T + GL+KD+ Q + +
Sbjct: 310 EVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKAL 369
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
P + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A +
Sbjct: 370 PGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYAT 429
Query: 446 NRVNKIYGPKEAS 458
+ G ++
Sbjct: 430 GNMEGRGGLRQHG 442
>gi|46204251|ref|ZP_00050268.2| COG4964: Flp pilus assembly protein, secretin CpaC
[Magnetospirillum magnetotacticum MS-1]
Length = 472
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 132/435 (30%), Positives = 218/435 (50%), Gaps = 24/435 (5%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
L+ ++S P+ P A + G+ +++ + + +I+ +
Sbjct: 6 RLRTIVLALLSAACLGQVPARRAKTPDCPAR-PRSDDRAERSGQSRRVELSKGRSLIVDL 64
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
P D ++V V++P A+ VV S R ++L G G ++ ++ +G+Q+ LD+ I RDI
Sbjct: 65 PRDAKEVFVANPAVANAVVRSSRKLFLIGIENGATSIFVMDAEGRQIAALDVTIARDINV 124
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
L +L++ + +I V+ V D++VL G V + ++Q+A++++ ++
Sbjct: 125 LRQSLQQSLPGRHIDVKAVGDSLVLSGGVSSASEAQQAIDIANA--FVGIAGGAGGAARG 182
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------SKSFAADF 234
V+N L I +DQV ++VT+ EV R ++KQ G + S+ P + +
Sbjct: 183 AVINNLTIRNKDQVMIRVTVVEVARSVIKQFGISTTGNWSALNPLDSTGNFLTNNTGFPL 242
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
G F G + FS + L A E+A R LAEPTLTAISG++A FT+GG+
Sbjct: 243 TGAFTPSGNALTASVRSGGFSLQATLRAFEQAGVSRILAEPTLTAISGEAAKFTAGGEIP 302
Query: 295 YKT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----- 344
S S+ YGV L FTP VL+ RI +R+ T+V+E +
Sbjct: 303 VPANCSVGAVGSACTISLVYKPYGVSLSFTPVVLAENRISIRVATDVTELDTQNSFSYNL 362
Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+P+ R R ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+
Sbjct: 363 NGRVVPVPATRRRNSETTVELASGATMMTAGLIQQQNKGTINGLPGLMNLPILGALFRSR 422
Query: 402 RFNREETEIFIAATP 416
F R+E E+ I TP
Sbjct: 423 DFQRDENELMILVTP 437
>gi|323700359|ref|ZP_08112271.1| type II and III secretion system protein [Desulfovibrio sp. ND132]
gi|323460291|gb|EGB16156.1| type II and III secretion system protein [Desulfovibrio
desulfuricans ND132]
Length = 476
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 114/427 (26%), Positives = 199/427 (46%), Gaps = 25/427 (5%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A V V+ K IS+ + + ++ +V + + T +VV SP +YL
Sbjct: 23 ATVAWARVVKSDKPDMISMIIGESTVITTDQNVSRITLGSDTVCSIVVISPTQIYLTANE 82
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVR 152
+G + L D + DI ++ D L+ + + N +RV +++ L G V
Sbjct: 83 IGSTTLTLWTGD-RVSEIYDIAVDPDTTRLKRMIYELLPQENNVRVLTSGNSITLSGQVS 141
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+ L+E + +V+NLL++ G QV L+V +AE+ R + K+
Sbjct: 142 NATSLSSVLSLAEAA------------APGRVVNLLSVDGIQQVMLEVRVAEMSRSVTKR 189
Query: 213 IGFQHSITGSSSGPSKSFAADFGGKF------VSEGGDFSVKGVLDRFSFETVLHALERA 266
+G + GS+ +++ + + V + ++ AL+
Sbjct: 190 LGLNFAAIGSNFSIYSIINNLTSYNNEDNVFELTDNINLAGSYVSGNTTIHGMVDALKSN 249
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+R LAEP LT +SG++A F GG+ S+ G + +G+ L FT TV+S G
Sbjct: 250 GLVRMLAEPNLTCVSGEAAEFLVGGEVPIPM-PSALGTVGIDYKPFGIALKFTATVMSSG 308
Query: 327 RIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
RI L++ EVSE + V+ ++P+ R+A+T VEL G + V+AGL+ D +++
Sbjct: 309 RINLQVNPEVSELDYSKALSVSGYEIPTISTRRANTVVELGDGQSFVIAGLISDSLKENA 368
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
P L ++P+LG+LF + FN +TE+ + T L KPV M + P D + DD +
Sbjct: 369 HKFPGLGEVPVLGSLFSSKDFNSNKTELVVLVTAHLAKPVDMATQTLPTDGFREPDDREF 428
Query: 443 FFFNRVN 449
+ F +
Sbjct: 429 YLFGLLE 435
>gi|254293214|ref|YP_003059237.1| type II and III secretion system protein [Hirschia baltica ATCC
49814]
gi|254041745|gb|ACT58540.1| type II and III secretion system protein [Hirschia baltica ATCC
49814]
Length = 535
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 151/537 (28%), Positives = 256/537 (47%), Gaps = 78/537 (14%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG---KGKKISIGLNKVIIL 60
+++ + + + S + + I + E G + +++ NK +L
Sbjct: 9 IKKILLSACVAAIGFGSESAFAQNSLAGGVSETIRVRVTEPGQSATSRTLNLSQNKTAVL 68
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-LIERD 119
+ DV D+LV++P ADV+ S R + + K G++++I GK++L+LD+ + +
Sbjct: 69 EFEEDVDDILVANPEIADVLARSKRRIAVLAKGKGESSIIFTNAQGKEILSLDVIVAGQG 128
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
++ L+ + +++ S I+ E V+ +VL G ++ D+ A++L++ F+
Sbjct: 129 VSELQALIEQYVPRSAIKAEFVNGAIVLAGKSPSLSDADMAIQLAQQFVVDD-------- 180
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------------- 222
V+N+++I G+DQV LKV I E++R ++KQ+G S + +
Sbjct: 181 --SPVINMISIEGKDQVLLKVRIVEMQRSVIKQLGVNLSGSMNIGELANKSVQTAYDAVT 238
Query: 223 ---------------------------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ S + + G + G + S
Sbjct: 239 GEVLLDAAGEALQVLAPAAPWDQSVSFGTSNSLGISGESLGGMSLSPSYNNYVGDKLQSS 298
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
+ LER +RTLAEP LTA+SG+SA F +GG+ + S G + +GV
Sbjct: 299 AGFSVDMLERIGLVRTLAEPNLTALSGESAKFLAGGEFPVPSEVDSDGEVVLEFKPFGVG 358
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------------------AGDMPSYRVRKA 356
L FTP VLS RI +RI TEVSE A +P+ +VR+A
Sbjct: 359 LGFTPVVLSESRISMRISTEVSELTSTGGYQIGGTTYVDGAGNTVSTPAVVIPALKVRRA 418
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
DTTVE+PSGG++V+AGL+++ Q + +P + +P++G+LFR+ F ETE+ + TP
Sbjct: 419 DTTVEMPSGGSLVIAGLIQEQTSQAMDKVPGVGNLPVIGSLFRSREFQNNETELVVIVTP 478
Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
+LV P + L PDD Y DAKA FF ++N++Y + A E G GFI+
Sbjct: 479 YLVDPTDPKKLRSPDDGYVAAKDAKAIFFGKMNEVYAVEGADVEETAGING-AGFIF 534
>gi|260778162|ref|ZP_05887055.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260606175|gb|EEX32460.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 469
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 107/454 (23%), Positives = 199/454 (43%), Gaps = 35/454 (7%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
+ + +N+ ++++ + + +S+ AD + + +FG G A + ++
Sbjct: 24 ANALEVNINEAKMIRLSEKAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITVLNEQE 83
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
+ + + I + D L+ ++ D+++ E + + L G V T + V +++
Sbjct: 84 RVIYSNKIRVVHDTQELDELIKAQFPDASVNSESLGGKLWLKGSVPTPVMAHSIVNVAKG 143
Query: 167 FLSQSGRNQYANSS--------------------SKKVMNLLNIAGEDQVTLKVTIAEVR 206
+LS Q +N++ +++N L + QV +++ IAEV
Sbjct: 144 YLSPIVAPQESNNNDSSKSSNSSESNSENQQNSNGDELINQLVVTMPTQVNIRIRIAEVS 203
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
R++ ++G + ++ ++ F + + + + ++ AL
Sbjct: 204 RNVSNKLGIKWGSLVTNGSTVENTVGSFLYNKPWDVSSW------GKPNLSALVDALAST 257
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+ LAEP LTA+SG+ A+F GG+ + T V +GV L+F P VL P
Sbjct: 258 GDMSILAEPNLTAMSGEEANFLVGGEVPIPLIQGDTAT--VEYKPFGVNLNFKPVVLGPD 315
Query: 327 RIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
RI L+++ EVS + N +PS+ R+A TT+EL SG + L GLL+ +
Sbjct: 316 RISLKVEPEVSSVSVDNQAVLNGNVLPSFTSRRASTTIELASGQSFALGGLLQSSEIEQL 375
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
+ +P + IPILG LFR++ + R ETE+ I AT +LV+P +L P D + D +
Sbjct: 376 QKLPGMGDIPILGGLFRSNEYQRRETELIIIATAYLVEPTRSDNLPIPTDALIPQSDLER 435
Query: 443 FFFNRVNKIYGPKEASEVE---GQNYKGAIGFIY 473
G + G GF Y
Sbjct: 436 LLALPDEDFVGTSGKATYTDNRKPRLLGDNGFYY 469
>gi|327189767|gb|EGE56911.1| cpaC pilus assembly Q protein [Rhizobium etli CNPAF512]
Length = 495
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 127/490 (25%), Positives = 219/490 (44%), Gaps = 34/490 (6%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
+R+ T L ++ + L P A+ S + +++ N+ + L
Sbjct: 6 RRSARTKSLAALAATFSACVILGPGFAGYASAQEKSVTLGKSVQHVTLPPNETLTLNTGQ 65
Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
D+++ DVV S +++++ GK G N+ + G D + +DI + D + +
Sbjct: 66 PFGDLVIGSADMIDVVPLSDKSLFVRGKKTGATNISVYGDDKSLLGVIDIRVASDFSEVS 125
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
+R + +RV +D + L G+VR + QR +E+++++ S + V
Sbjct: 126 AAIRSAAPTARVRVFNSNDRIRLVGVVRDSIELQRVLEIAQSY------------SEQPV 173
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------------ 232
+N L ++ QV L+V I E R + +G S G+++ K+ +
Sbjct: 174 LNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGYGNNNRIGKATTSQGITVDDGNLAR 233
Query: 233 ------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ G + + + V++ALE+ +R LA+P L A+SG +AS
Sbjct: 234 TLLDPKGAATGMLPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMSGSTAS 293
Query: 287 FTSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
F +GG+ T + +T AT +GV L F P VL G I L I+ EVSE +N
Sbjct: 294 FHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGVINLEIEPEVSELDPSIN 353
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
P + R A TTV L G + LAGLL+ + + +P L +IP+LGALFR++ F
Sbjct: 354 VNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQMPGLGQIPVLGALFRSTSFQ 413
Query: 405 REETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
++E+++ I TP +V+P DL P D +D + F V ++ G+
Sbjct: 414 KKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALG-VMEVDKDMLRRFRNGE 472
Query: 464 NYKGAIGFIY 473
G G
Sbjct: 473 GVTGPYGHRL 482
>gi|94497254|ref|ZP_01303826.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
gi|94423359|gb|EAT08388.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
Length = 486
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 125/464 (26%), Positives = 210/464 (45%), Gaps = 28/464 (6%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L ++ + +N + + + + + ++ +P + DV+++DP
Sbjct: 4 LAGPAIAIGLAVACAAVPTSALNAATSSMQDNAIL-LSVGGSRVINLPAKMSDVVIADPE 62
Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
DV V S +YL K G+ V +GK + + + + +I ++ LR + +N
Sbjct: 63 VVDVHVRSQNQLYLIAKKAGETTVFATAPNGKVLFSGTVRVGNNITSIDDMLRIAMPGAN 122
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
I V ++ V+L G ++ +D+ L++ F+ + V++ L +A Q
Sbjct: 123 IAVNTMNGMVLLTGTIQAPEDAAEVERLTQAFVGKDVT----------VVSRLRMATPLQ 172
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------------GKFVS 240
V L+V IAEV +D+ +IG + S G +
Sbjct: 173 VMLQVKIAEVAKDVGHKIGTNFASVDRSGGKVAGNVGGGLRDFAQYNADTNSWDFTNPID 232
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G + L E + TLA+P LTA+SG++ASF +GG++ Y +
Sbjct: 233 GGYSLGGVARILGMDIAGALDLAESSGLASTLAQPNLTALSGETASFLAGGEYPYTVSNG 292
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
G S+ YGV L FTPTVL+ GRI LR++ VS +NA ++P+ + R A+TTV
Sbjct: 293 LQG-NSIEFKQYGVQLAFTPTVLADGRISLRVRPTVSSLDFSINA-NVPALKSRTAETTV 350
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
EL SG ++AGLL ++ +P L +PILG+LF++ +F R ETE+ I TP+LVK
Sbjct: 351 ELGSGQAFMIAGLLNNEASNNVNKVPGLGNLPILGSLFKSRQFQRNETELVIVVTPYLVK 410
Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
P+ D+ P D + D + F R +
Sbjct: 411 PMNASDVRLPTDGFRNADLGEGLFLQRSHSGTSGARRPMPSRAP 454
>gi|13471032|ref|NP_102601.1| secretory protein [Mesorhizobium loti MAFF303099]
gi|14021776|dbj|BAB48387.1| probable secretory protein [Mesorhizobium loti MAFF303099]
Length = 461
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 124/462 (26%), Positives = 214/462 (46%), Gaps = 23/462 (4%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
M+ L + + LP + +A+ ++ +S + I + K + +++
Sbjct: 1 MAAALVAGA--MLALPGVAKADNDIVYVSATKNA---SIKVAKGKPKTIVTNAAFYQIVI 55
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
DP A+V + ++ Y+ G N+G + L + + +DI + D L T+R +
Sbjct: 56 GDPEIANVNPLTDKSFYVLGNNLGTTGIALFDEKKQLVGTVDIEVTLDTDQLASTIRASV 115
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
D+ I+V + VVL G +++A +++ F +++V+N +NI+
Sbjct: 116 PDAKIKVGSANGRVVLSGEADDAVAAEKANKIATRFSG-----------TEEVINSVNIS 164
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
QV L V E+ R + +G ++S + + + D G + G+ + +
Sbjct: 165 SSQQVQLNVRFVEINRQAGQDLGAKYSANFAYGFGGRDVSLDPGTVPAAGTGEIIGRLLS 224
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ S + + ALE R LAEP L A SG++ASF +GG+ VS G SV+
Sbjct: 225 NGVSIDIAIKALEERGLARRLAEPNLIARSGETASFLAGGEFPIP-VSEDNGKISVSYKK 283
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGT 367
YGV L FTPTVL G + L I EVS + +P + VR+A T+V+L +G +
Sbjct: 284 YGVSLDFTPTVLKDGLVSLDIAPEVSSIDASSSYNIGTISVPGFIVRRAKTSVDLKNGQS 343
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RD 426
++AGLL+ IP L K+P+LGALF + + R ET++ I TP+LVKPV +
Sbjct: 344 FMIAGLLQSQNDITTSRIPGLGKMPVLGALFSSKSYQRRETDLVIIVTPYLVKPVDPSKK 403
Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
+ P D + +F N ++ + + A
Sbjct: 404 MVEPTDGTRPASNVD-YFLNNTEEVKASDAGRALALADGSAA 444
>gi|167899813|ref|ZP_02487214.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 7894]
Length = 473
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 36 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 95
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 96 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 154
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 155 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 214
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 215 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 270
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E
Sbjct: 271 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 330
Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
VSE N +P R+A TTV++ G T + GL+KD+ Q + +P
Sbjct: 331 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 390
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
+ ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A +
Sbjct: 391 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 450
Query: 447 RVNKIYGPKEAS 458
+ G ++
Sbjct: 451 NMEGRGGLRQHG 462
>gi|145219384|ref|YP_001130093.1| type II and III secretion system protein [Prosthecochloris
vibrioformis DSM 265]
gi|145205548|gb|ABP36591.1| type II and III secretion system protein [Chlorobium
phaeovibrioides DSM 265]
Length = 472
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 124/496 (25%), Positives = 208/496 (41%), Gaps = 69/496 (13%)
Query: 1 MRYLQRTFFTM--MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI 58
M YL R+ M + L S P P + + +
Sbjct: 5 MSYLMRSGCRMSAFAALLSSIAPVAGLAAPSTYF-------------------VPVGESR 45
Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
+ ++ ++ V V +P AD ++ + +YL GK G N+IL GK + + + R
Sbjct: 46 VYRLEQPIKRVAVGNPEVADYIMLNSSELYLLGKKTGATNLILWNQQGK-FTSTLLQVSR 104
Query: 119 DIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN--- 174
+ ++ LR + + I++ + +VL G V ++ A L + +L +
Sbjct: 105 NSYPIKQLLRTALPEESEIQIFSSGEALVLAGSVSNRLAAETAYRLVKAYLGGKVPDVNP 164
Query: 175 -------------------------------QYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
+++ V+NLL + QV L+V IA
Sbjct: 165 ESSLAKTTSASAASASIAGTTNGSSAVPVQASTQSTAPAGVVNLLTVRDTQQVRLEVRIA 224
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
EV + L+ +G + + FVS + E + A
Sbjct: 225 EVSKTYLQTLGIGWQQ------GTGNTQGSLMTGFVSNATLNVLLQTKSNPGNELSMDAE 278
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
+ I+ LAEPTL A+SG+ F GG+ TV+S+ V YGV L FTPTVL
Sbjct: 279 RKEGVIKILAEPTLVAMSGEEGYFLVGGKVFTPTVTSNGAIDYVERT-YGVGLRFTPTVL 337
Query: 324 SPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
GRI L++ EVSEP V + +P ++ A +TV++ G +V+ GLL+D++
Sbjct: 338 DSGRISLKVAPEVSEPLKEAVTAGTSTPLPGFKTSFASSTVQMNEGENLVIGGLLRDNLT 397
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
++ +PLLS IPILG+LFR++ + E TE+ + P L+K + P D ++
Sbjct: 398 EVVRAVPLLSDIPILGSLFRHTEKSSETTELMVIIRPTLIKA-STTAQELPTDKFAPPSS 456
Query: 440 AKAFFFNRVNKIYGPK 455
++ F ++ G K
Sbjct: 457 SELFLEGKLQGSRGSK 472
>gi|299067807|emb|CBJ39018.1| pilus assembly secretion protein [Ralstonia solanacearum CMR15]
Length = 635
Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats.
Identities = 117/498 (23%), Positives = 223/498 (44%), Gaps = 55/498 (11%)
Query: 17 FSSNPSVAKLPPIKEANAAVINIS-----DVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
++N + A+ A N + ++++ + K ++Q+ V+ V
Sbjct: 60 MAANGPIQLTIGSARADTARENTVKGPNCTGPMRDHSEVTVPVGKSTMVQLSEPVRSRTV 119
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
+P ++ SP+T+YL G++VG N+I+ G G +D+ + D L+ TL +
Sbjct: 120 GNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQATLHALM 178
Query: 132 ADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK-------- 182
++ +RV +D++VL G V +Q+ ++++ F+ + R + +
Sbjct: 179 PEASRVRVSAAADSLVLGGTVSDSVQAQKIMDIANAFVMRETRGPAQSGQAGTMGMQGMT 238
Query: 183 -----------------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+++N++++ QV L+V +AEV + ++ Q+G ++
Sbjct: 239 AMSTGNAATASSGSGSGEAVRNPRIINMMSVEAPQQVMLEVKVAEVSKTLINQMGAALNL 298
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
+G S+ F+S D ++ F+ L A + ++ LAEP L A
Sbjct: 299 ----NGSFGSWTFGALANFLSGAPDIFSVDKANKLPFQLKLDAQKGDGLVKVLAEPNLMA 354
Query: 280 ISGQSASFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
ISGQ ASF +GG+ S T + + +GV L FTPTVL GRI L++ EV
Sbjct: 355 ISGQEASFLAGGKVYIPVPQSFGSGTTSILLQEETFGVGLRFTPTVLENGRINLKVAPEV 414
Query: 337 SEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
SE +P R+A TT+++ G + + GL+K +I + IP
Sbjct: 415 SELSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHDGQSFAIGGLIKSNITGSLKAIPG 474
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
+ ++P++GAL R++ F +++TE+ TP LVKP+ + P D + + + +
Sbjct: 475 VGELPVIGALARSTSFQQDQTELLFVVTPHLVKPL-PANYPMPTDSFGPVNQGEVYLNGN 533
Query: 448 VNKIYGPKEASEVEGQNY 465
+ + A ++
Sbjct: 534 MEGHPAQRPAPASTQGSF 551
>gi|83716099|ref|YP_440456.1| type II and III secretion system protein [Burkholderia
thailandensis E264]
gi|83649924|gb|ABC33988.1| Bacterial type II and III secretion system protein domain protein
[Burkholderia thailandensis E264]
Length = 679
Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats.
Identities = 124/433 (28%), Positives = 216/433 (49%), Gaps = 21/433 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 94 GAMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212
Query: 161 VELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
V +++ + ++ V+N+L + QV L+V +AEV + ++ Q+G
Sbjct: 213 VAIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAV 272
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
++ G + + ++ G+ ++ + A ++ LAEP L
Sbjct: 273 NLQGGFGSWTGALVTSL----LTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRL 328
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334
ISGQ A+F +GG+ SS TS ++GV L FTPTVLS GRI L++
Sbjct: 329 VTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAP 388
Query: 335 EVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
EVSE +P R+A TTV++ G T + GL+KD+ Q + +
Sbjct: 389 EVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKAL 448
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
P + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A +
Sbjct: 449 PGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYAT 508
Query: 446 NRVNKIYGPKEAS 458
+ G ++
Sbjct: 509 GNMEGRGGLRQHG 521
>gi|103486617|ref|YP_616178.1| type II and III secretion system protein [Sphingopyxis alaskensis
RB2256]
gi|98976694|gb|ABF52845.1| type II and III secretion system protein [Sphingopyxis alaskensis
RB2256]
Length = 493
Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 127/481 (26%), Positives = 217/481 (45%), Gaps = 34/481 (7%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
+ ++ + A + + I + + + ++ +P + DV V
Sbjct: 7 FKAAALARTLAIGLVAATLIAAPSRPVAAQAVQNASSSIDLSVGRGRLISLPAAMSDVFV 66
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
+D ADV V S R +Y+F K G+ ++ G+ + + + +I ++ L +
Sbjct: 67 ADDKVADVQVRSSRQLYVFAKAPGETSIYATDASGRVVFSTVARVGNNIETIDQMLSLAM 126
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
+++I ++ V+L G VR+ D+ A L + F+ KV++ L A
Sbjct: 127 PEASIAANTMNGFVLLTGTVRSPDDAAEAERLVQAFVGDQT----------KVLSRLRTA 176
Query: 192 GEDQVTLKVTIAEVRRDILKQI---------------GFQHSITGSSSGPSKSFAADFGG 236
QV L+V IAEV R ++K++ GF + G + + A+
Sbjct: 177 TPLQVNLQVRIAEVNRSLVKELSGNLLTRDTDGPLGNGFLGGVFGGRQAGTITTDANGNT 236
Query: 237 ----KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ G L L ER+ + TLA+P LTAISG++A F +GG+
Sbjct: 237 IYSITTPPGTRSLAGAGRLFGLDLIASLDIGERSGLVATLAQPNLTAISGETADFLAGGE 296
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDM 348
+ + T++ YGV L +TPTVLS GRI LR++ EVSE +
Sbjct: 297 FPVP-IPGNFAGTTIEYRKYGVSLAYTPTVLSNGRISLRVRPEVSELSTEGAIEMQGFQI 355
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P+ +R+A+TTVEL SG + ++AGLL + + +P L +P+LG LF++ F R ET
Sbjct: 356 PALTIRRAETTVELGSGESFMIAGLLNNRSIGAIDKMPGLGDVPLLGTLFKSDSFRRGET 415
Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
E+ I TP+LV+PV+ D+ P D + DD + N+ + + + + G
Sbjct: 416 ELVIVVTPYLVEPVSANDIKLPTDAFRDADDLQRLLLNQTSDGVTGGDRPKPRLDSNVGD 475
Query: 469 I 469
Sbjct: 476 A 476
>gi|241662165|ref|YP_002980525.1| type II and III secretion system protein [Ralstonia pickettii 12D]
gi|240864192|gb|ACS61853.1| type II and III secretion system protein [Ralstonia pickettii 12D]
Length = 603
Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 114/488 (23%), Positives = 214/488 (43%), Gaps = 40/488 (8%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
M + +A + ++++ + K ++Q+P V+
Sbjct: 59 MAASGPIQLTIGSPATAEANRDSAGKGPNCTGPMRSHSEVTVPVGKSTMVQLPEPVRSRT 118
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
V +P ++ SP+T+Y+ G VG N+I+ G G +D+ + D L+ TLR+
Sbjct: 119 VGNPNVVQAMLVSPQTLYVLGLEVGSTNMIVQGRSGSC-SVVDVAVGADPGGLQSTLRKL 177
Query: 131 IADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------------------ 171
+ ++ N++V +D++VL G V +Q+ V+++ F+ +
Sbjct: 178 MPEARNVQVSAAADSLVLGGSVSDSVQAQKVVDIANAFVMRRTRGPNEGEQNATGQGGQQ 237
Query: 172 --GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
A S +++N++ + QV L+V +AEV + ++ Q+G + G+ S
Sbjct: 238 LHTAGPGAPLRSPRIINMMTVEAPQQVMLEVKVAEVSKTLIDQMGAAFNANGAFGSWSFG 297
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
A+ F+S D + + L A + ++ LAEP+L AISGQ ASF +
Sbjct: 298 AIAN----FLSGSSDIVNFSKANHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLA 353
Query: 290 GGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--- 342
GG+ + + +GV L FTPTV+ GRI L++ EVSE
Sbjct: 354 GGKVFIPVAQGAAANGVATIVLQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVA 413
Query: 343 ------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
N +P R+A TT+++ G + + GL+K++I + +P + ++PI+G+
Sbjct: 414 VTAPNSNNTSILPLITTRRASTTLQVHDGQSFAIGGLIKNNITGSLKALPGIGELPIIGS 473
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
L R++ F +++TE+ TP LVKP+ P D + + + + +
Sbjct: 474 LARSTSFQQDQTELLFVVTPRLVKPL-PAQYPLPTDSFGTINRGELYLNGNMEGHVQAPA 532
Query: 457 ASEVEGQN 464
+
Sbjct: 533 SQPTAVAA 540
>gi|329847253|ref|ZP_08262281.1| bacterial type II and III secretion system family protein
[Asticcacaulis biprosthecum C19]
gi|328842316|gb|EGF91885.1| bacterial type II and III secretion system family protein
[Asticcacaulis biprosthecum C19]
Length = 535
Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats.
Identities = 147/538 (27%), Positives = 239/538 (44%), Gaps = 77/538 (14%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEA--------NAAVINISDVEIGKGKKISIGLN 55
+ L + + A + + + + + + +
Sbjct: 8 SRALLPATALAGLMTLLATGAHATGEPKPYNSLKSGGGGGMAVQTQTSQARVQVLRLPKG 67
Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
+ ++ +P D DV VS+P AD V+ +PR +++ G GQ++ I G+Q+LNL I
Sbjct: 68 RSAVVDLPTDAADVFVSNPAVADAVLRTPRRIFVLGVEGGQSDAIFFDAQGRQILNLSIR 127
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
+E L T+ R S + V+ ++ VVL G+ + + + L+ +++++
Sbjct: 128 VEAATDELTDTVHRLFPTSKVEVQSLNGRVVLSGLAQNNAQADQIARLAASYVTK----- 182
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
+ V+NL++IAG+DQVTLKV + EV+R +KQ+G I ++ S S+
Sbjct: 183 -----PEDVINLMSIAGKDQVTLKVRVIEVQRSAIKQLGLSSDIVYNNGSQSYSYGRGNT 237
Query: 236 GKFVS------------------------------------------------EGGDFSV 247
+
Sbjct: 238 YGTNGTSYGGRGLCYGQNNVVTNNFTDSNSVTDQTAVTLEDTPVVNRTLTATIGSAVNTT 297
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
L S T L A ER IRTLAEP LTA+SG++A F +GG+ G +V
Sbjct: 298 WRTLTGSSNATCLQAFERVGLIRTLAEPNLTAVSGEAAKFLAGGEFPVPVAEDDAGRITV 357
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAGDMPSYRVRKADTTVE 361
+GV L FTP VLS GRI ++I TEVSE + +P VR+A+TTVE
Sbjct: 358 EFKPFGVGLGFTPVVLSEGRISMKISTEVSEITNVGAFTSNGSNLTIPGLSVRRAETTVE 417
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ SGG++++AGLL+ +Q + +P ++ +PILG+LFR+ F E+TE+ + TP++V P
Sbjct: 418 MQSGGSLMIAGLLQSKYKQSIDSLPGMTSLPILGSLFRSRDFLNEDTELVVMVTPYIVDP 477
Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAI----GFIYK 474
V L P D+ DD F R+NK + G A+ V G G++ +
Sbjct: 478 VHPDQLQTPADNLEFADDMSTVFMGRLNKVVDGDAVAAGVPASGPTGPYVAPIGYVIE 535
>gi|87199534|ref|YP_496791.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
gi|87135215|gb|ABD25957.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 517
Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats.
Identities = 133/476 (27%), Positives = 209/476 (43%), Gaps = 54/476 (11%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
NA E + + +NK ++ + LV + ADV+ + R++Y+ GK
Sbjct: 24 NATRAQGITAENLHAGTLEVPVNKSQVVSTDRTIAKALVGNDDIADVLPVTTRSIYVLGK 83
Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
+G ++ L G+ + +D+ + D+ L L+ F+ + I + +D +VL G+V
Sbjct: 84 KMGTTSLTLYDATGRVLSIMDVAVGPDVEGLRSQLKTFVPNDKIDARLSNDAIVLSGLVN 143
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
RAV+L+ T+ KV+NL+++ QV L+V AEV R
Sbjct: 144 DPGAIDRAVQLARTYAG------------DKVVNLISLGSSQQVMLEVKFAEVNRTAGFD 191
Query: 213 IGFQHSITGSSS------------GPSKSFAADFGGKFVSEG----------------GD 244
+G + + G + + + GG S G
Sbjct: 192 VGVSGFASKGTFESAIGKGAQLVPGADVTVSGNSGGVSTSTTIPGASILKLSSITGSFGI 251
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
F +D + VL+ALE +TLA+PTL A+SG+ ASF +GG+ V S T
Sbjct: 252 FRKSFSIDGLGIDAVLNALETKGMAKTLAQPTLLALSGERASFLAGGEFPVPVVQSGTTG 311
Query: 305 T--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYR 352
T +V +GV L FTPTVL I L ++ EVS V + +P R
Sbjct: 312 TGNGNGGAITVEFKPFGVSLGFTPTVLGDKTINLLVEPEVSAIDPTASLTVGSITIPGLR 371
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R+A TT+EL G + +AGLL+ D + + +PLL +PI+G+LFR+S F++ ETE+ I
Sbjct: 372 TRRASTTLELRDGESFAIAGLLQKDFKTSVQQLPLLGSLPIIGSLFRSSAFSKGETELLI 431
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
TP LV P+ + P D + A F +G K A
Sbjct: 432 VVTPRLVSPIKPEQVRLPTDAVTDPSAASTIFLG--EPSFGKKLAPTKPQDGSAAP 485
>gi|153006805|ref|YP_001381130.1| type II and III secretion system protein [Anaeromyxobacter sp.
Fw109-5]
gi|152030378|gb|ABS28146.1| type II and III secretion system protein [Anaeromyxobacter sp.
Fw109-5]
Length = 490
Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats.
Identities = 128/503 (25%), Positives = 215/503 (42%), Gaps = 55/503 (10%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
L + + ++A A D E+G +++S+ + +L + +
Sbjct: 2 IPHRARALLVTLLVAAGPAVAQEQAQATPALRIDREMGAAREMSLEAGQNRLLIISEQIA 61
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
+ V++P AD+ V +P + L K VG ++ L D + + + + + R++ L +
Sbjct: 62 RIAVANPDVADLKVVTPTQVLLTAKGVGTTDLTLWNRDNQPL-VIALQVGRNLEALRTQV 120
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
++ N+++ D VVL G V ++ +R E++ ++KV NL
Sbjct: 121 KQLFPGENVKITASGDLVVLSGEVTDVRLPERVAEVAR-------------LHAEKVANL 167
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFAADFGGK 237
+ ++G QV L+V AEV R L+++G S+ F
Sbjct: 168 IQVSGVQQVQLQVRFAEVARGGLRELGVNLFHKSDDFRTVGGLFSNRTLPGEFLNTNQNP 227
Query: 238 FVSEGGDFSVKGVL---------------------DRFSFETVLHALERATAIRTLAEPT 276
+ G + G D F F +L LE+ ++LAEPT
Sbjct: 228 SIPGTGPRGLAGNGFPPDVPAPAFQNAFSVFLSRMDDFPFSVMLSLLEQNNLAKSLAEPT 287
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
L A+SGQ A F +GG+ SS G TSV +G+ L FTPTV+ I L ++TEV
Sbjct: 288 LVALSGQGARFLAGGELPIPLA-SSFGQTSVEWKRFGIQLEFTPTVIGD-AIHLTMKTEV 345
Query: 337 SEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
S+ + +P R+++T++ L G + +AGL+ D I+ +P + IP
Sbjct: 346 SDIDPSLAVTIAGTSVPGLTSRQSETSIRLADGQSFAIAGLVSDRIRSQVAKVPFIGSIP 405
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFNRVNK 450
ILGALFR+ F R+E+E+ + T LVKPVA +L P + + D + K
Sbjct: 406 ILGALFRSQAFQRDESELIVVVTAHLVKPVAPHELPPLPTEYEMNDPGDLPFYLLGSQGK 465
Query: 451 IY--GPKEASEVEGQNYKGAIGF 471
K + G GF
Sbjct: 466 SAQIAEKRQPASPERGPSGQSGF 488
>gi|167566934|ref|ZP_02359850.1| outer membrane protein [Burkholderia oklahomensis EO147]
Length = 550
Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats.
Identities = 124/429 (28%), Positives = 216/429 (50%), Gaps = 22/429 (5%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 92 GEMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIV 151
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V Q +Q+A
Sbjct: 152 QGRSGAC-QIIDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAGNVSDAQAAQQA 210
Query: 161 VELSETFLSQSGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
V +++ + ++ A + + V+N+L + QV L+V +AEV + ++ Q+G
Sbjct: 211 VAIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMGSA 270
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
+I G + + G+ ++ F+ L A ++ LAEP
Sbjct: 271 INIQGGFGSWTGMLVSSLLAGV----GNGIAASKSNKLPFKAALDAQNTDQPVKILAEPR 326
Query: 277 LTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
L ISGQ A+F +GG+ + ++ + T ++ ++GV L FTPTVLS GRI L++
Sbjct: 327 LVTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLKVA 386
Query: 334 TEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
EVSE +P R+A TTV++ G T + GL+KD+ Q
Sbjct: 387 PEVSELSPTGVTLSATNVSGVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLRA 446
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
+P + +IP+LGALFR++ F ++ TE+ TP LVKP+ D+ P D ++ ++ +
Sbjct: 447 LPGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEVDVYA 506
Query: 445 FNRVNKIYG 453
+ G
Sbjct: 507 TGNMEGRGG 515
>gi|17545374|ref|NP_518776.1| outer membrane channel protein [Ralstonia solanacearum GMI1000]
gi|17427666|emb|CAD14185.1| probable pilus assembly protein, secretin cpac [Ralstonia
solanacearum GMI1000]
Length = 634
Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats.
Identities = 115/496 (23%), Positives = 222/496 (44%), Gaps = 53/496 (10%)
Query: 17 FSSNPSVAKLPPIKEANAAVINIS-----DVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
++N + A+ A N + ++++ + K ++Q+ V+ V
Sbjct: 60 MAANGPIQLTIGSARADTARENTVKGPNCTGPMRDHSEVTVPVGKSTMVQLTEPVRSRTV 119
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
+P ++ SP+T+YL G++VG N+I+ G G +D+ + D L+ TL +
Sbjct: 120 GNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQATLHALM 178
Query: 132 ADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK-------- 182
++ +RV +D++VL G V +Q+ ++++ F+ + R + +
Sbjct: 179 PEASRVRVSAAADSLVLGGTVSDSVQAQKIIDIANAFVMRETRGPAQSGQTGTMGMQGMT 238
Query: 183 ---------------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
+++N++++ QV L+V +AEV + ++ Q+G ++
Sbjct: 239 AMSTGNAATASSGSGEAVRNPRIINMMSVEAPQQVMLEVKVAEVSKTLINQMGAALNL-- 296
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+G S+ F+S D ++ F+ + A + ++ LAEP L AIS
Sbjct: 297 --NGSFGSWTFGALANFLSGAPDIFSADKANKLPFQLRVDAQKGDGLVKVLAEPNLMAIS 354
Query: 282 GQSASFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
GQ ASF +GG+ S T + +GV L FTPTVL GRI L++ EVSE
Sbjct: 355 GQEASFLAGGKVYIPVPQSFGTGTTTILLQEETFGVGLRFTPTVLENGRINLKVAPEVSE 414
Query: 339 PVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+P R+A TT+++ G + + GL+K ++ + IP +
Sbjct: 415 LSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHDGQSFAIGGLIKSNVTGSLKAIPGVG 474
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
++P++GAL R++ F +++TE+ TP LVKP+ + P D + + + + +
Sbjct: 475 ELPVIGALARSTSFQQDQTELLFVVTPHLVKPL-PANYPMPTDSFGPVNQGEVYLNGNME 533
Query: 450 KIYGPKEASEVEGQNY 465
+ A ++
Sbjct: 534 GHPASRPAPAPTQGSF 549
>gi|309780760|ref|ZP_07675501.1| type II and III secretion system protein:Transport-associated
[Ralstonia sp. 5_7_47FAA]
gi|308920442|gb|EFP66098.1| type II and III secretion system protein:Transport-associated
[Ralstonia sp. 5_7_47FAA]
Length = 603
Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats.
Identities = 113/480 (23%), Positives = 212/480 (44%), Gaps = 40/480 (8%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
+A + ++++ + K ++Q+P V+ V +P
Sbjct: 67 LTIGSPASAEANRDSAGKGPNCTGPMRSHSEVTVPVGKSTMVQLPEPVRSRTVGNPNVVQ 126
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIR 137
++ SP+T+Y+ G VG N+I+ G G +D+ + D L+ TLR+ + ++ N++
Sbjct: 127 AMLVSPQTLYVLGLEVGSTNMIVQGRSGSC-SVVDVAVGADPGGLQSTLRKLMPEARNVQ 185
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS--------------------GRNQYA 177
V +D++VL G V +Q+ V+++ F+ + A
Sbjct: 186 VSAAADSLVLGGSVSDSVQAQKVVDIANAFVMRRTRGPNEGDQNATGQGGQQLHTAGPGA 245
Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
S +++N++ + QV L+V +AEV + ++ Q+G + G+ S A+
Sbjct: 246 PLRSPRIINMMTVEAPQQVMLEVKVAEVSKTLIDQMGAAFNANGAFGSWSFGAIAN---- 301
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
F+S D + + L A + ++ LAEP+L AISGQ ASF +GG+
Sbjct: 302 FLSGSSDIVNFSKANHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPV 361
Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VN 344
+ + +GV L FTPTV+ GRI L++ EVSE N
Sbjct: 362 AQGAAANGVATIVLQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNN 421
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+P R+A TT+++ G + + GL+K++I + +P + ++PI+G+L R++ F
Sbjct: 422 TSILPLITTRRASTTLQVHDGQSFAIGGLIKNNITGSLKALPGIGELPIIGSLARSTSFQ 481
Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
+++TE+ TP LVKP+ P D + + + + + +
Sbjct: 482 QDQTELLFVVTPRLVKPL-PAQYPLPTDSFGTINRGELYLNGNMEGHVQAPASQPTAVAA 540
>gi|209546483|ref|YP_002278401.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209537727|gb|ACI57661.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 495
Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats.
Identities = 127/495 (25%), Positives = 218/495 (44%), Gaps = 35/495 (7%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59
M +R S+ ++ S A A V +GK +++++ N +
Sbjct: 1 MANGKRRIARTKSLAALAAVFSACVCLGPGFAGCANAQEKSVTLGKSVQRVTLPPNATLT 60
Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
L D+++ DVV S +++++ GK +G N+ + G D + +D+ + D
Sbjct: 61 LNTGQAFGDLVIGSADMIDVVPLSDKSLFIRGKKIGATNISVYGDDKSLLGVIDVRVASD 120
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +R + + V SD + L G+VR + QR +++++++
Sbjct: 121 FSEVAAAIRSAAPSARVIVANSSDRIRLTGIVRDGVELQRVMDIAQSY------------ 168
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---- 235
S + V+N L ++ QV L+V + E R + +G S G++ + + G
Sbjct: 169 SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGRGNNGIGKATTSQGLGVDDN 228
Query: 236 --------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ G + + + V++ALE+ +R LA+P L A+S
Sbjct: 229 GSLVRTLVDPKGAATGALPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMS 288
Query: 282 GQSASFTSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
G +ASF +GG+ T + +T AT +GV L F P VL G I L I+ EVSE
Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGLINLEIEPEVSEL 348
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+N P + R A TTV L G + LAGLL+ + + +P L KIPILGALFR
Sbjct: 349 DPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQLPGLGKIPILGALFR 408
Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
++ F ++E+++ I TP +V+P DL P D +D + F + +
Sbjct: 409 STSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALGVLE-VDKDMLRR 467
Query: 459 EVEGQNYKGAIGFIY 473
G+ G G
Sbjct: 468 FRNGEGVTGPYGHRL 482
>gi|87312292|ref|ZP_01094390.1| putative outer membrane channel for pilus assembly CpaC
[Blastopirellula marina DSM 3645]
gi|87284996|gb|EAQ76932.1| putative outer membrane channel for pilus assembly CpaC
[Blastopirellula marina DSM 3645]
Length = 534
Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats.
Identities = 123/471 (26%), Positives = 205/471 (43%), Gaps = 27/471 (5%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
M S + ++A + AV N++ +++ + +N I + +
Sbjct: 1 MYSYGVACLLIAIATPAANAQDMGAVPNVNFKVDAPNQRLEMMVNSSRIFTLDEKIPKAQ 60
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
V++P + SP + + G V L DG + +DI++ D L++ L
Sbjct: 61 VNNPDLLRLTPLSPNKIQVSALKPGVTQVNLWNEDG-TIHTIDIIVIGDGRELQLLLETE 119
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+S+I+V ++ +VVL G V + R V ++E + KV+N + +
Sbjct: 120 FPNSSIKVRPLASSVVLSGYVDRPEAVSRIVAMAEDYYP-------------KVINNITV 166
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----------FAADFGGKFVS 240
G QV LKV + EV R L+++G + GS S + + +
Sbjct: 167 GGVQQVMLKVKVYEVSRTKLRRLGIDWAAIGSDYFISSTAANVLTPAGVLTSGARDALGA 226
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G + F L AL + + AEPTLT ISG+ ASF SGG+ + V+S
Sbjct: 227 TGQTVQFGVLGSSTQFFGFLDALRQNNVAKLSAEPTLTTISGRPASFLSGGEVPIQ-VAS 285
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
G TS+ YG + F P VL G + L ++ EVSEP V P +R+R DT V
Sbjct: 286 GLGTTSIEYKQYGTRVDFVPIVLGNGNLKLEVRPEVSEPDYSVAINGTPGFRLRWVDTAV 345
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
E+ +G + LAGL+++ I+ G+P L+ +P +GA FR + +R E E+ I TP LV
Sbjct: 346 EMKAGQSFALAGLIQEKIETETRGLPYLADLPWVGAAFRRNTDSRNEVELLIIVTPELVG 405
Query: 421 PVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
+ ++ P + + D + + V P + + G
Sbjct: 406 ALNPEEVPCEYPGSNTGITTDCELYGRGYVEVPACPPGGACISEPGMIGPY 456
>gi|329890996|ref|ZP_08269339.1| bacterial type II and III secretion system family protein
[Brevundimonas diminuta ATCC 11568]
gi|328846297|gb|EGF95861.1| bacterial type II and III secretion system family protein
[Brevundimonas diminuta ATCC 11568]
Length = 522
Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats.
Identities = 136/507 (26%), Positives = 248/507 (48%), Gaps = 70/507 (13%)
Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
+ A + + +++ + +P D +DV++S+P A+ ++HSPR +
Sbjct: 26 AASDGARAQTRAAITAGSAPQMVNLPRGTSFAVDLPADARDVIISNPAVAEAMLHSPRRI 85
Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
+ G G+ + + + G+ +L L + ++ ++ L+ TL R SN+R E V+D+++L
Sbjct: 86 TMIGLAGGETDAVFLDASGRTILALRVRVDAGVSALQDTLARVAPGSNVRAEAVNDSIIL 145
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G+ + +++RA +++ F+ S+ +KVMN++ +AG DQVTLKV + EV+R
Sbjct: 146 TGVAASPLEAERAAQVARAFV----------SAPEKVMNMIAVAGSDQVTLKVRVVEVQR 195
Query: 208 DILKQIGFQHSI-------------TGSSSGPSKSFAADFGGKFVSEGG----------- 243
+ +KQ+GF ++ G + SF G +
Sbjct: 196 NAIKQLGFDTQAVIGRVGDTQWLLGNSATWGVNGSFLGGLAGGIARDTTKNFQMQVPCVG 255
Query: 244 ---------------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
+ G E +L A ER +RTLAEP
Sbjct: 256 PGWPEGAMCPVTVDGSPGDPSNWDTAKPGTGPGSDGLNKGEAMLKAFERVGLVRTLAEPN 315
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
LT+++G++ASF +GG+ G +V YGV L F P VLS GRI L+++ EV
Sbjct: 316 LTSVNGEAASFLAGGEFPVPAGRDREGQITVEYKPYGVGLSFRPVVLSEGRISLQVKVEV 375
Query: 337 SEPVI---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
SE ++ +P VR+++ T+ELPSGG++++AGLL++ +Q + +P
Sbjct: 376 SELTPNGGLTIGAGTPSSITLPGLTVRRSENTIELPSGGSMMIAGLLQESTRQAIDALPG 435
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
++ +P+LG LFR+ + ETE+ + P++V P + + P D + DA+ FF +
Sbjct: 436 MTNLPVLGQLFRSRDYVMGETELVVIVEPYIVNPTSPDRMQTPADGLRIAQDAQTIFFGQ 495
Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474
+N++YG + G ++G +G++ +
Sbjct: 496 LNQVYGSPAPAAQPGAGWRGPVGYVIE 522
>gi|319782173|ref|YP_004141649.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317168061|gb|ADV11599.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 481
Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats.
Identities = 116/457 (25%), Positives = 195/457 (42%), Gaps = 32/457 (7%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A DV +I + +++ + +QV ++ D++V D AD + RT+Y+ GK
Sbjct: 27 DAADRFIDVSTPAVHRIFLPMSQSVTIQVSANLGDIVVGDEKIADAQPMTDRTLYVIGKG 86
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G V L D + + L I + D++ + +R+ S I V V+ V L G V+
Sbjct: 87 AGTTTVNLFSTDKRSLGALQIEVGVDVSDMAQAIRQVAPKSRIEVGSVNGRVRLGGHVKD 146
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ +++ + V+N + + QV L+V + E +R+ + +
Sbjct: 147 GATLAAIMAVAQQY------------GPDAVINSVIVDDSQQVNLEVRVLEAKRNTGRDL 194
Query: 214 GFQHSITGSSSGPSKSFAADF----------------GGKFVSEGGDFSVKGVLDRFSFE 257
G + G + + +
Sbjct: 195 GVSIKSRNGDGTTRTGTGVAAVDEDGVVLGPGGLLSGLLSNSAPFGALITRVIDSNIKVD 254
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
++ ALE A+RTLA P LT +SG+ ASF +GG+ G S+ +GV L
Sbjct: 255 LIIEALESKGAVRTLANPNLTTLSGEQASFNAGGEVP-IRTLDKDGEISIVYKQFGVNLL 313
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
FTP VL G+I + + EVS+ AGD P + RK T VEL G + + GLL
Sbjct: 314 FTPVVLDDGKIHMNLAPEVSDLTGFTTAGD-PIFTNRKLATVVELRDGQSFAVGGLLSSK 372
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSV 436
+L++ +P L ++P++G LFR+S +EETE+ + TP +V+PV L+ P D
Sbjct: 373 TTKLQDQVPWLGQVPVIGTLFRSSSNQKEETELVVIVTPHIVRPVKPGEQLATPFDKTRP 432
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
+D + F ++ E G+ G G +
Sbjct: 433 ANDPEFFVLGQLEVTKDMVRKYET-GEGVTGPYGHML 468
>gi|217978832|ref|YP_002362979.1| type II and III secretion system protein [Methylocella silvestris
BL2]
gi|217504208|gb|ACK51617.1| type II and III secretion system protein [Methylocella silvestris
BL2]
Length = 530
Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 133/486 (27%), Positives = 213/486 (43%), Gaps = 38/486 (7%)
Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
L + A + + E + +++++ K ++ +V ADV+ S
Sbjct: 42 MGLAETQPAKSQAGSTIQYEPAQVRRVAVTRYKSRTFRMETPFSSAVVGSADIADVLPMS 101
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
R +Y+ GK VG NV + D K + +D+ + DI ++ +R IRV +D
Sbjct: 102 DRVIYIQGKRVGTTNVSIFDKDKKLIGVIDLEVTLDIQNIAAKVRSGTDSRGIRVSSNND 161
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
+VL G R D+ RAV ++++ + + + + K V+N +++A QV L+V
Sbjct: 162 QIVLSGEARNAVDADRAVSIAKSMV-TTADGKPPDDPGKFVINAMSVAAAQQVLLRVRFV 220
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------------------FGG 236
EV R + IG + + + + GG
Sbjct: 221 EVNRIAERDIGVNWFGAANKTQTAGVNTGNGIASQVGQSLTPTPGGIPLFQTLATLVPGG 280
Query: 237 KFVSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ F V + L + + ++ ALE+ R LAEP L A+SG +ASF +GG++
Sbjct: 281 LASTGSLPFGVGLIKLAGGNVDLLISALEKKGQARRLAEPDLIALSGDTASFLAGGEYPV 340
Query: 296 KTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDM 348
+V SS+G T V + YGV L F PTVL+ G I LR+ VSE V+ +
Sbjct: 341 PSVQSSSGTTPVITTQYYPYGVQLTFIPTVLANGIINLRLNPSVSELDYKNVVVTAGFAI 400
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
PS R+A TT+EL G + +AGLL+ D IP L +P+LGALF + + + ET
Sbjct: 401 PSITKREARTTIELRDGQSFAIAGLLQSDSTHDVNQIPWLGSVPVLGALFSSKSYQQNET 460
Query: 409 EIFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
++ + TP LV P A ++ P D +D F R + G G
Sbjct: 461 DLVVIVTPHLVAPAAPGQVVATPFDKTLPANDVDFFVMGRPEVRKQYTD-YVTSGGGLTG 519
Query: 468 AIGFIY 473
G I
Sbjct: 520 PYGDIM 525
>gi|295690798|ref|YP_003594491.1| type II and III secretion system protein [Caulobacter segnis ATCC
21756]
gi|295432701|gb|ADG11873.1| type II and III secretion system protein [Caulobacter segnis ATCC
21756]
Length = 564
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 150/521 (28%), Positives = 231/521 (44%), Gaps = 90/521 (17%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
N V + + + K I+++P DV+D+LV+ PT AD V+ R +Y+ G
Sbjct: 55 NGQVARVVLTADQTAATLELAKGKSAIVELPADVRDLLVTSPTVADAVLRDRRRVYIVGL 114
Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
G + G+++L+L I + + + L TL R + D+ I V + D+VVL G VR
Sbjct: 115 AEGVTDAAFFDDAGRRILSLSIKVSQPVDQLADTLSRVLPDAKIEVRPIRDSVVLSGTVR 174
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK- 211
+ S A ++ ++ KV+N+L+IAG+DQV L+V I EVRR+++K
Sbjct: 175 SPAQSDAAARIAAQYVGG----------PDKVLNMLSIAGKDQVMLQVRIVEVRRNVIKQ 224
Query: 212 ----------QIGFQHSITGSSSGPSKSFAADFGG------------------------- 236
Q+G G S S + G
Sbjct: 225 LGVDLNAVLGQLGQSQYSFGLSPTYSVNGNLLGGVTGGYKLDTTKQPTLQIPCGNGVGDA 284
Query: 237 --------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
G + ++ A ER +R
Sbjct: 285 KCLAVVHGKVYHTGVIDPTTGREIVVGNGDTATISDTAGSTGVNQAKGMIQAFERVGLVR 344
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
TLAEP LTA+SG++ F GG+ T S +TG ++ YGV L +TP V+S GRI L
Sbjct: 345 TLAEPNLTAVSGEAGHFLVGGEFPVPTGSDATGKIAIEFKPYGVGLGYTPVVMSGGRISL 404
Query: 331 RIQTEVSEPVI-----------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+I TEVSE +P VR+A+TTVELPSGG+ ++AGL
Sbjct: 405 KISTEVSELSSLGAFTISNSTTSGNTTTTSAPLTVPGLSVRRAETTVELPSGGSFMIAGL 464
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
L+ +Q + +P ++ +PILG+LFR+ F ETE+ I TP++V P RDL P D
Sbjct: 465 LQQTTKQAIDALPGMTNMPILGSLFRSRDFLNGETELVIIVTPYIVDPAKPRDLQTPADG 524
Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
+ D R+N++ G+ Y+G +G++ +
Sbjct: 525 LRMAGDMSTVLLGRLNQVVKAPP-GANAGRAYQGPVGYVIE 564
>gi|13475294|ref|NP_106858.1| type II secretion system protein [Mesorhizobium loti MAFF303099]
gi|14026045|dbj|BAB52644.1| type II secretion system protein [Mesorhizobium loti MAFF303099]
Length = 432
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 129/451 (28%), Positives = 205/451 (45%), Gaps = 26/451 (5%)
Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
+ + I +S L K + +P + V+DPT AD S T+++F
Sbjct: 1 MQDQGAPRAASNSIDGTLNLSSSLGK--TVHLPAPATTIFVADPTIADYQAASNTTIFVF 58
Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
GK G+ ++ + G+ + L I++ + I L L + DS+I+V +L G
Sbjct: 59 GKKSGRTSLFALDDKGEALAALRIVVTQPIEELRAMLMDQVGDSSIQVSYTPRGAILSGT 118
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
+ + A ++E +L +V+N + +AG QV L V +AEV R +
Sbjct: 119 APNAEVADTAKRVTEQYLGDGA----------QVVNNIKVAGSLQVNLSVRVAEVSRSAM 168
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--SFETVLHALERATA 268
K +G S G + G + G + + + VL AL +
Sbjct: 169 KALGVNLSAFGQIDNFRVGLLSGGGTGSGAAQGGGTAGIGFNNGAVNIGAVLDALAKEHI 228
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
LAEP LTA+SG++ASF +GG+ V SV +GV L F PTVL+ RI
Sbjct: 229 ASVLAEPNLTAMSGETASFLAGGEFPIP-VLQENKQVSVEFRHFGVSLEFVPTVLNNNRI 287
Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ ++ EVSE + +N +P+ R+ADT VEL SG + + GL++ ++
Sbjct: 288 NIHVKPEVSELSSQGAVQINGISVPAVSTRRADTVVELASGQSFAIGGLIRRNVNNNVSA 347
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAF 443
P L ++PILGALFR+S F +EE+E+ I TP++VKP + +S P D + D
Sbjct: 348 FPWLGEMPILGALFRSSSFQKEESELIILVTPYIVKPGSSPNQMSAPTDRMAPALDDP-- 405
Query: 444 FFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
+ G A +G GFI +
Sbjct: 406 ---PADPPRGRAAARTGAPGAKRGR-GFIIQ 432
>gi|167924333|ref|ZP_02511424.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei BCC215]
Length = 438
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 122/428 (28%), Positives = 218/428 (50%), Gaps = 20/428 (4%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ G
Sbjct: 1 MRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQG 60
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+AV
Sbjct: 61 KSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVA 119
Query: 163 LSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I
Sbjct: 120 IAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNIQ 179
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G + + ++ G ++ + A ++ LAEP L I
Sbjct: 180 GGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVTI 235
Query: 281 SGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
SGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EVS
Sbjct: 236 SGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEVS 295
Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
E N +P R+A TTV++ G T + GL+KD+ Q + +P +
Sbjct: 296 ELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPGI 355
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + +
Sbjct: 356 GELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGNM 415
Query: 449 NKIYGPKE 456
G ++
Sbjct: 416 EGRGGLRQ 423
>gi|307726375|ref|YP_003909588.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
gi|307586900|gb|ADN60297.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
Length = 616
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 117/466 (25%), Positives = 209/466 (44%), Gaps = 27/466 (5%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
S N + + ++ AA + + + + K ++ V++ + +P
Sbjct: 56 MTISMNAAPPQPASAMQSAAARGPACTRTQSDQRTVVVPVGKSTLMPTAEPVRNRTLGNP 115
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
A + SP+T+Y+ G VG N+I+ G G +++++ D L+ +L + + D
Sbjct: 116 LVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADSGGLQTSLSQLMPDE 174
Query: 135 -NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS--------GRNQYANSSSKKVM 185
NIRV V+ +VL G V + Q + +A E+++ + + N A + V+
Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARSTLPGASGGANGNGTAAGKTATVL 234
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
N++++ QV L+V +AEV + +L Q+G +I G S + + S
Sbjct: 235 NMMSVDSPQQVMLEVKVAEVSKTVLNQLGAAMNIQGGFGSWSGALISSLLAGVSS----I 290
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
+ F + ++ LAEP L +SGQ A+F +GG+ S+
Sbjct: 291 VDVNKANNRPFNVAIDGQHGDNLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGV 350
Query: 306 SV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRV 353
S ++GV L FTPTVL+ GRI L++ EVSE +P
Sbjct: 351 STIILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITT 410
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R+A TTV++ G T + GL+K++ + IP + ++P+LGALFR++ + ++ TE+
Sbjct: 411 RRASTTVQMNDGETFAIGGLIKNNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELVFI 470
Query: 414 ATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
TP LVKP+ +L P D ++A + +
Sbjct: 471 ITPHLVKPLQTAANLPLPTDRLKTPNEADVYLMGNMEGRDPAGSTK 516
>gi|167584957|ref|ZP_02377345.1| type II and III secretion system protein [Burkholderia ubonensis
Bu]
Length = 536
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 119/435 (27%), Positives = 212/435 (48%), Gaps = 19/435 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+
Sbjct: 81 GAVRESTSVSVPLGKSMLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 140
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +L + + +I V +DT+VL G V + Q +Q+A
Sbjct: 141 QGKSGACR-IIDVAVGADAGGLQASLGQLMPGERDIHVSTAADTIVLAGNVSSAQAAQQA 199
Query: 161 VELSETFLSQSGRNQYANSSSKK-VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+++ + + G ++ V+N+L + QV L+V +AEV + ++ Q+G +I
Sbjct: 200 AAIAKAYANAGGGGANGDNKGGGTVLNMLTVTAPQQVMLEVKVAEVSKTLINQLGSAFNI 259
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
G S + ++ S V + F + A ++ LAEP L
Sbjct: 260 QGGFGSWSGALVSNLLAGVASG----IVANKANNRPFSVAVDAQNTDNLVKILAEPNLVT 315
Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
ISGQ A+F +GG+ S+TG ++ ++GV L F PTVLS GRI L++ EV
Sbjct: 316 ISGQEATFLAGGKIFIPVPQSNTGGGTTITLQEEEFGVALRFLPTVLSNGRISLKVAPEV 375
Query: 337 SEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
SE +P R+A TTV++ G + + GL+KD+ + +P
Sbjct: 376 SELSQTGVTLTATNVAGASILPLITTRRASTTVQMADGESFAIGGLIKDNATGSLKAVPG 435
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
+ +IP+LGAL R++ F ++ TE+ TP LVKP+ D+ P D ++ ++ F
Sbjct: 436 IGEIPVLGALARSTSFQQDRTELIFIITPHLVKPLQTADVPLPTDSFTRTNEVDVFATGN 495
Query: 448 VNKIYGPKEASEVEG 462
+ G ++
Sbjct: 496 MEGRGGLRKHGRAPA 510
>gi|294139870|ref|YP_003555848.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
gi|293326339|dbj|BAJ01070.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
Length = 442
Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats.
Identities = 129/461 (27%), Positives = 201/461 (43%), Gaps = 56/461 (12%)
Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
+++ LNK ++Q+P + + +S T AD + + +FGK G ++ ++ D
Sbjct: 2 TLAVTLNKAELVQLPKTAKSIFISSNTIADYQALTNTKIMVFGKRAGTTSLYVLDADENV 61
Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
+ + + + ++ L +R D+ + E ++ + L G V T +++ V LSE ++
Sbjct: 62 IYSASVKVSHNVTELNGLIRSEFPDALVSAESIAGKLFLKGRVPTPTMAEKIVRLSEGYV 121
Query: 169 SQSGRNQY----------------------------ANSSSKKVMNLLNIAGEDQVTLKV 200
SQ ++ S +++N L I QV L+V
Sbjct: 122 SQPQSSKGKQQGGKSSGQAKGSKQQGQNGGGQESQSGTGSKGELINQLEITMSTQVNLRV 181
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
IAEV R++ ++G + G G F+ L ++
Sbjct: 182 RIAEVSRNVSNKLGIKWGSQGF------------------GTGKFAFSDGLGFSKLSVMV 223
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
AL I LAEP LTAISG+ ASF GG+ + T S+ +GV L F P
Sbjct: 224 DALATNGMITVLAEPNLTAISGEKASFLVGGEVPIPLIYGDT--VSIEYKPFGVRLDFKP 281
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
TVLSP RI L+I+ EVS N P + RKA TT+EL SG + L GLL+
Sbjct: 282 TVLSPNRISLQIEPEVSTISQSTNVVMGDSSFPVFMTRKASTTIELASGQSFALGGLLQS 341
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
+ + +P + IPILGALFR++ F REETE+ I AT +LV+P L P D
Sbjct: 342 TDIEQMQKMPWIGDIPILGALFRSNEFKREETELIIIATVYLVEPTRGDSLPLPTDGLIP 401
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYK----GAIGFIY 473
D + + + + N + G GF Y
Sbjct: 402 MSDVERLLAWPRSGVNPSTDTQVNPNDNRQLRLLGDNGFYY 442
>gi|295700370|ref|YP_003608263.1| type II and III secretion system protein [Burkholderia sp.
CCGE1002]
gi|295439583|gb|ADG18752.1| type II and III secretion system protein [Burkholderia sp.
CCGE1002]
Length = 634
Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats.
Identities = 113/473 (23%), Positives = 210/473 (44%), Gaps = 36/473 (7%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
P+ A + EI +S+ + K I++ + ++ + +P A
Sbjct: 74 MPTGATSGRMVAPAQLTGPNCTGEIRDESNVSVAVGKSILVPLVEPARNRTLGNPVVAQA 133
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRV 138
+ S RT+Y+ G +VG N+I+ G G +D+ + D L+ TL + + + IRV
Sbjct: 134 TLVSQRTLYVVGMSVGTTNMIVQGRSGAC-QIIDVSVGVDAEGLQRTLAQLLPNERGIRV 192
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---------------- 182
+ +VL G V + Q +Q+A+ ++ + Q +S++
Sbjct: 193 SSAAGNLVLAGRVSSGQAAQQAMSIAGAYAGAQPTQQDQSSTASFGNGGSISQQSSSVSK 252
Query: 183 --KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
+V+N++ + QV L+V +AEV + +L Q+G +I G + + + S
Sbjct: 253 GSEVINMMTVDSPQQVMLEVKVAEVSKTLLNQLGAAVNIQGGFGSWTGALVSSLLAGVSS 312
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+ F + A + + + LAEP L +SGQ ASF +GG+ S
Sbjct: 313 G----VAVSKANNRPFNIAVDAQKSDSLGKILAEPNLVTLSGQEASFLAGGRVFIPVPQS 368
Query: 301 STG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDM 348
+ ++ ++GV L FTPTVL+ R+ L++ EVSE + +
Sbjct: 369 NGTGGSTITLQEEEFGVGLKFTPTVLAGSRVNLKVAPEVSELSPTGVTVQATGTSSTAIL 428
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P R+A TTV++ G + + GL++++I + +P + ++P+LGALFR++ F ++ T
Sbjct: 429 PLITTRRASTTVQMNDGESFAIGGLIQNNITGALKALPGIGEVPVLGALFRSTSFQQDRT 488
Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
E+ T LVKP+ D P D ++ D + + + +
Sbjct: 489 ELIFIVTVHLVKPLPPGDYPLPTDSFTGVSDGTVYATGNMEGRRPTASPNAPQ 541
>gi|332188377|ref|ZP_08390102.1| bacterial type II and III secretion system family protein
[Sphingomonas sp. S17]
gi|332011606|gb|EGI53686.1| bacterial type II and III secretion system family protein
[Sphingomonas sp. S17]
Length = 511
Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats.
Identities = 131/496 (26%), Positives = 212/496 (42%), Gaps = 39/496 (7%)
Query: 1 MRYLQRTFFTMMS--IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI 58
M R+ T + + P A S + I +
Sbjct: 1 MTMTMRSILTGAGRGSVVALMLAPLLLAPAPAHGAPAGPGDSADAGSGAGVLEINTGRAR 60
Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
++ +P + D+ V+D T ADV V SP +Y+FGK G+ + G + + I
Sbjct: 61 LITLPRPMTDLFVADDTIADVQVRSPTQLYIFGKKPGETTISATARGGAVVYATTVRIGN 120
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
++ + LR + ++ I ++ ++L G V D A L + ++ +
Sbjct: 121 NLDSIGRMLRLAMPEAQIASTPMNGLILLTGTVAAPDDVAEAERLVQAYVGKDT------ 174
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAAD 233
KV++ L A QV L+V IAEV R+ +K IG + +G G
Sbjct: 175 ----KVISRLKTATPLQVNLQVRIAEVNRNFVKSIGVNLLNRDRNSSGFVFGIGSGRNPG 230
Query: 234 FGGKFVSEGG----------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
+ G + G + + E + TLA P L
Sbjct: 231 TITDLTNAAGTTIGTQYGFNQGPLRTTLGLGGRVLGMDLLGAMDLGETLGQVSTLANPNL 290
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
TA+SG++A+F +GG+ + GA SV YGV L +TPTVLS GRI LR++ EVS
Sbjct: 291 TALSGETATFLAGGEIPIPLS-TGLGAVSVEYKQYGVSLSYTPTVLSDGRISLRVRPEVS 349
Query: 338 EPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
+ + ++ +P+ R+A+TT+EL SG ++++ GLL + E P L +P+
Sbjct: 350 QITSVGAVTISGTTIPALTTRRAETTLELGSGQSMMIGGLLSNSRDNSIEKTPWLGDLPL 409
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
+GALFR++ F R ETE+ I TP+LVKPV + D++ P D +DA+ R+
Sbjct: 410 IGALFRSNAFKRNETELVIIITPYLVKPVNSPSDIALPTDGQRSPNDAERVLLGRMAAGS 469
Query: 453 GPKEASEVEGQNYKGA 468
+G
Sbjct: 470 SEPRPVPTMATPVQGR 485
>gi|78186537|ref|YP_374580.1| type II secretion system protein [Chlorobium luteolum DSM 273]
gi|78166439|gb|ABB23537.1| type II secretion system protein [Chlorobium luteolum DSM 273]
Length = 461
Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats.
Identities = 109/457 (23%), Positives = 191/457 (41%), Gaps = 51/457 (11%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
+ + + + + ++ ++ V V +P AD ++ + +YL GK G N+I
Sbjct: 14 FSGLAAPSTYLVPVGESRVYRLEQPIKRVAVGNPEVADYIMLNSSELYLLGKKTGATNLI 73
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQR 159
L G L + + R++ ++ L+ + +I++ +VL G ++
Sbjct: 74 LWDQKGNCTSTL-LQVSRNVYPIKKLLKTALPKETDIQIFASGPALVLAGSASNSLAAES 132
Query: 160 AVELSETFLSQ-------------------------------------SGRNQYANSSSK 182
A L + +L + A +
Sbjct: 133 AYRLVKAYLGGTVPGVNPESSLSNSGSGSAAPASMSGTQNSSYAAPVIATSASTAPAGMS 192
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
++NLL + QV L+V IAEV + ++ +G + + FVS
Sbjct: 193 GLVNLLTVRDTQQVRLEVRIAEVSKSYIETLGLGWTQ------GVGNTQGSLMTGFVSNA 246
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ + A + I+ LAEPT+ A+SGQ F GG+ S+
Sbjct: 247 TLNLLLQTKSNPGNRLDMDAERKEGLIKILAEPTMVAMSGQEGYFLVGGKVYTP-TLSTN 305
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADT 358
GA YGV L FTP VL GRI L++ EVSEP V +G +P ++ A +
Sbjct: 306 GAVDYVERTYGVGLRFTPVVLDSGRISLKVAPEVSEPLKEAVTAGTSGPLPGFKTSFASS 365
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TV++ G +V+ GLL+D++ ++ +PLL+ IPILG+LFR++ + E TE+ + P L
Sbjct: 366 TVQMREGENLVIGGLLRDNLTEVVRAVPLLADIPILGSLFRHTEKSSETTELMVIIRPTL 425
Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
+K + P D + ++ F ++ G K
Sbjct: 426 IKASD-KAPELPTDRFVPPSSSELFIEGKLQSSRGSK 461
>gi|254418362|ref|ZP_05032086.1| Putative phospholipid-binding domain family [Brevundimonas sp.
BAL3]
gi|196184539|gb|EDX79515.1| Putative phospholipid-binding domain family [Brevundimonas sp.
BAL3]
Length = 517
Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats.
Identities = 141/533 (26%), Positives = 257/533 (48%), Gaps = 75/533 (14%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
MR T+ + + A + + + AAV + ++ I++ +
Sbjct: 1 MRKT-PVRKTVALACVLLAGLGAAPVAGLAQTRAAVSMGAAPQL-----INLPRGTSFAV 54
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+P D +DV+V++P A+ ++HSPR + + G G+ + + + G+ +L+L + ++
Sbjct: 55 DLPADARDVIVANPQVAEAMLHSPRRITVIGIAPGETDAVFLDAAGRTILSLRVRVDAGT 114
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+ L+ TL R + S IR E V+D+V+L G+ + + +A +++ F+ S+
Sbjct: 115 SALQDTLSRLVPGSQIRAEAVNDSVILSGVADSPAQAVQAAQVARAFV----------SA 164
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
+KV+N+++IAG DQVTLKV + EV+R +KQ+GF S G ++ + V+
Sbjct: 165 PEKVLNMISIAGSDQVTLKVRVVEVQRSAIKQLGFDTSAVVGQLGSTQWLLGNSATWGVN 224
Query: 241 EGGDFSVKGVLDRFSF-------------------------------------------- 256
G + L R +
Sbjct: 225 GGLIGGISAGLSRDTTKNYQMQRPCVGPGWTPGALCPVTVRGPDDASNWDTAQPGTGPGS 284
Query: 257 ------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ A ER +RTLAEP LT+++G++ASF +GG+ + G +V
Sbjct: 285 NDLNKGSATVKAFERVGLLRTLAEPNLTSVNGEAASFLAGGEFPIPSGRDRDGNITVVYK 344
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---------GVNAGDMPSYRVRKADTTVE 361
YGV L F P VL GRI L+++ EVSE ++ +P VR+++ TVE
Sbjct: 345 PYGVALSFRPVVLDAGRISLQVKVEVSELTSQGGLTIGAGTTSSVSLPGLSVRRSENTVE 404
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
L SGG++++AGLL+++ +Q + +P ++ +P+LG LFR+ + ETE+ + P++V P
Sbjct: 405 LSSGGSMMIAGLLQENTRQAIDALPGMTNLPVLGQLFRSRDYLNGETELVVIVEPYIVSP 464
Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
+ + P D + D++ F ++N+IYG + G ++GA G++ +
Sbjct: 465 TSPDRMQTPADGLRIASDSQTILFGQLNQIYGSPSPTAQSGAVWQGAAGYVIE 517
>gi|319783874|ref|YP_004143350.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317169762|gb|ADV13300.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 482
Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats.
Identities = 122/434 (28%), Positives = 203/434 (46%), Gaps = 18/434 (4%)
Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
++ V K I + K + +++ DP A+V + ++ Y+ G N+G
Sbjct: 43 DVVYVSSTKNASIKVAKGKPKTIITSAAFYQIVIGDPEIANVNPLTDKSFYVLGNNLGTT 102
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
+ L + + +DI + D L T+R + D+ I+V + VVL G +
Sbjct: 103 GIALFDEKKQLVGTVDIEVTLDTDQLASTIRASVPDARIKVGSANGRVVLSGEADDAVAA 162
Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
++A +++ F +++V+N +NI+ QV L V E+ R + +G ++
Sbjct: 163 EKANKIATRFSG-----------AEEVINSVNISSSQQVQLNVRFVEINRQAGQDLGAKY 211
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
+ + + + D G + G+ + + + S + + ALE R LAEP L
Sbjct: 212 AANFAYGLGGRDVSIDPGTVPTAGTGEIIGRLLSNGVSIDIAIKALEERGLARRLAEPNL 271
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
A SGQ+ASF +GG+ VS G SV+ YGV L FTPTVL G + L I EVS
Sbjct: 272 IARSGQTASFLAGGEFPIP-VSEDNGKISVSYKKYGVSLDFTPTVLKDGLVSLDIAPEVS 330
Query: 338 EPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
+ +P + VR+A T+V+L +G + ++AGLL+ IP L K+P+
Sbjct: 331 SIDASASYNIGTISVPGFIVRRARTSVDLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPV 390
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
LGALF + + R ET++ I TP+LVKPV + L P D +A +F N ++
Sbjct: 391 LGALFSSKSYQRRETDLVIIVTPYLVKPVDPSKKLVEPTDGTQPASNAD-YFLNNTEEVK 449
Query: 453 GPKEASEVEGQNYK 466
V + +
Sbjct: 450 DSDAGRTVALADGR 463
>gi|288956969|ref|YP_003447310.1| pilus assembly protein [Azospirillum sp. B510]
gi|288909277|dbj|BAI70766.1| pilus assembly protein [Azospirillum sp. B510]
Length = 491
Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats.
Identities = 117/441 (26%), Positives = 201/441 (45%), Gaps = 32/441 (7%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+++ + ++++ +V V+DP ADV S +++ G+ G+ V + + +
Sbjct: 66 MTLDVGTSEMVRLSAPATNVYVADPEIADVQAASGTVIFVLGRKPGRTTVYALTEGDRVV 125
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
L+ DI + +A L + + V + +++ G V T ++ +EL F
Sbjct: 126 LHRDIRVIHSLAPLREQITARFPGMPVTVTSAPNRLIVTGEVPTPAIAESVMELVNGFAR 185
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGS 222
KV+N + + G QVTL+V +AEV R + +++GF +
Sbjct: 186 ----------PDDKVVNQMAVTGPVQVTLRVQVAEVARSVTQELGFNWEGAVKIGDFAIA 235
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVL----DRFSFETVLHALERATAIRTLAEPTLT 278
A G S G S+ G+L + + ++ A++ + LA+P L
Sbjct: 236 PGFGRDFLNATSGAIQRSATGASSLAGILKSSNGKANIAGIVDAMQDQGLVTLLAQPNLV 295
Query: 279 AISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
A+SG+ A F +GG+ S + V YGV L+F PTVL+P RI L ++ EV
Sbjct: 296 AMSGKPAMFLAGGEFPIPVSAGDSGSNKIQVEFKQYGVALNFVPTVLAPDRIALTVRPEV 355
Query: 337 SEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
SE + VN +P+ VR+ +T+VEL SG + + GLL++ + + P L +P
Sbjct: 356 SELTDVGAVTVNGLTIPALTVRRVETSVELGSGESFAIGGLLQNSNRSSLKKFPGLGDLP 415
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
+LG LFR+ RF ETE+ + TP++V P+ P + + R +
Sbjct: 416 VLGELFRSRRFINNETELVVIVTPYVVNPIQRGPGVIPQRGTKPNREVEELLRRRQQALG 475
Query: 453 GPKEASEVEGQNYKGAIGFIY 473
P+ A +Y G GFIY
Sbjct: 476 LPEPAG-----SYYGPAGFIY 491
>gi|209515951|ref|ZP_03264812.1| type II and III secretion system protein [Burkholderia sp. H160]
gi|209503609|gb|EEA03604.1| type II and III secretion system protein [Burkholderia sp. H160]
Length = 431
Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats.
Identities = 112/443 (25%), Positives = 193/443 (43%), Gaps = 23/443 (5%)
Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
+ ++I +L +P V V+DP ADV V +P T+++ GK G +
Sbjct: 3 GALAASGDPSLAIAAGGGEMLHLPEAAVAVFVADPDVADVHVPTPETVFVLGKKAGTTTL 62
Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
+G + +L +++ D ++ L + + ++++ G V +
Sbjct: 63 FALGAHNRTILRETVVVSADTPSIQRMLDARFPQFQLTLTAAPGSLMVAGRVPDAAAADA 122
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ +L + ++N L + QV L+V I EV R++ +Q+G +
Sbjct: 123 VMQSLTPYLHDK----------ETLVNRLTLTRPIQVHLRVRITEVDRNVTQQLGINWNA 172
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-----FETVLHALERATAIRTLAE 274
G S G + +L F + VL AL++ I LAE
Sbjct: 173 LGQSGNFIGGLFNGRAGSATTTLSSTGAFSILGAFQAGKWAIDGVLDALDQEGLITMLAE 232
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P LTA+SG++ASF +GG+ T + ++ YGV L FTPTVL+ RI L+++
Sbjct: 233 PNLTAMSGETASFLAGGEFPIPVPQGQTNSITIEFKPYGVSLDFTPTVLADNRISLKVRP 292
Query: 335 EVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
EVSE + +P+ VR+ +TTVEL SG + + GLL+ + + +P L K
Sbjct: 293 EVSELDTTNGVTIDSIKVPALTVRRVETTVELSSGQSFAIGGLLQSNTSDVLAELPGLGK 352
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
+P+LG LF + + ++E+ + TP++V+P L +P D +
Sbjct: 353 LPVLGKLFSSKSYLNNKSEVVVIVTPYIVQPAEPGRLRQPIDTIVHPSSDIEYVLQSRLG 412
Query: 451 IYGPKEASEVEGQNYKGAIGFIY 473
I GA GF+Y
Sbjct: 413 IDPLSG----SVPRLVGAAGFVY 431
>gi|170692564|ref|ZP_02883726.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
gi|170142220|gb|EDT10386.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
Length = 614
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 122/461 (26%), Positives = 211/461 (45%), Gaps = 25/461 (5%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
S N + A+ + AA + + + + K ++Q V++ + +P
Sbjct: 56 MTISMNAAPAQPSSAMQNAAARGPACTRTQSEQSTVVVPVGKSTLMQTAEPVRNRTLGNP 115
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
A + SP+T+Y+ G VG N+I+ G G +++++ D L+ +L + + D
Sbjct: 116 LIAQATMVSPKTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADAGGLQTSLSQLMPDE 174
Query: 135 -NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------GRNQYANSSSKKVMNL 187
NIRV V+ +VL G V + Q + +A E+++ + + N N S V+N+
Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARTTLPNPNGAANGNGNGKSATVLNM 234
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
+++ QV L+V +AEV + +L Q+G +I G S + + S
Sbjct: 235 MSVDSPQQVMLEVKVAEVSKTVLNQLGAAMNIQGGFGSWSGALISSLLAGVSS----IVD 290
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
+ F + A ++ LAEP L +SGQ A+F +GG+ S+ S
Sbjct: 291 VNKANNRPFNVAIDAQHGDNLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGVST 350
Query: 308 ---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRK 355
++GV L FTPTVL+ GRI L++ EVSE +P R+
Sbjct: 351 IILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITTRR 410
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
A TTV++ G T + GL+K + + IP + ++P+LGALFR++ + ++ TE+ T
Sbjct: 411 ASTTVQMNDGETFAIGGLIKSNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELVFIIT 470
Query: 416 PFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
P LVKP+ +L P DH ++A + +
Sbjct: 471 PHLVKPLQTASNLPLPTDHLKTPNEADVYLMGNMEGRDPAG 511
>gi|323529413|ref|YP_004231565.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
gi|323386415|gb|ADX58505.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
Length = 616
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 120/466 (25%), Positives = 213/466 (45%), Gaps = 27/466 (5%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
S NP+ A+ ++ AA + + + + K ++Q V++ + +P
Sbjct: 56 MTISMNPAPAQPANTMQSAAARGPACTRTQSEQSTVVVPVGKSTLMQTAEPVRNRTLGNP 115
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
A + SP+T+Y+ G VG N+I+ G G +++++ D L+ +L + + D
Sbjct: 116 LVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADSGGLQTSLSQLMPDE 174
Query: 135 -NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS--------GRNQYANSSSKKVM 185
NIRV V+ +VL G V + Q + +A E+++ + + N A + + V+
Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARSTLPAANGGTNGNGGAPAKAATVL 234
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
N++++ QV L+V +AEV + +L Q+G +I G S + + S
Sbjct: 235 NMMSVDSPQQVMLEVKVAEVSKTVLNQLGSAMNIQGGFGSWSGALISSLLSGVQS----I 290
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
+ + F + ++ LAEP L +SGQ A+F +GG+ S+
Sbjct: 291 AAVSKANNRPFNVAVDGQHGDDLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGV 350
Query: 306 SV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRV 353
S ++GV L FTPTVL+ GRI L++ EVSE +P
Sbjct: 351 STIILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITT 410
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R+A TTV++ G T + GL+K + + IP + ++P+LGALFR++ + ++ TE+
Sbjct: 411 RRASTTVQMNDGETFAIGGLIKSNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELIFI 470
Query: 414 ATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
TP LVKP+ +L P D ++A + +
Sbjct: 471 ITPHLVKPLQAVANLPLPTDRLKTPNEADVYLLGNMEGRDPAGSRK 516
>gi|300692331|ref|YP_003753326.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07]
gi|299079391|emb|CBJ52062.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07]
Length = 644
Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats.
Identities = 113/446 (25%), Positives = 207/446 (46%), Gaps = 41/446 (9%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ ++++ + K ++Q+P V++ V +P ++ SP+T+YL G+ VG N+I+
Sbjct: 119 GAMRAHSEVTVPVGKSTMVQLPEPVRNRTVGNPNVVQAMLVSPQTLYLLGQEVGTTNMIV 178
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L TL + D+ +RV +D++VL G V +Q+
Sbjct: 179 QGRSGSC-SVIDVAVGADPGGLLATLHELVPDAKGVRVSAAADSLVLSGSVSDSVQAQKV 237
Query: 161 VELSETFLSQSG----------------------RNQYANSSSKKVMNLLNIAGEDQVTL 198
V+++ F+++ A S +++N++ + QV L
Sbjct: 238 VDIANAFVTRQTRGPSQHDQGGGQGANSATQGAITAPGAQPRSPRIINMMAVEAPQQVML 297
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
+V +AEV + ++ Q+G ++ + S A+ F+S D + +
Sbjct: 298 EVKVAEVSKTLIDQMGAAFNLNSAFGSWSFGAIAN----FLSSSQDLVSFSKANNLPLKF 353
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVV 315
L A ++ LAEP+L AISGQ ASF +GG+ S TG + +GV
Sbjct: 354 ALDAQRGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVPQSFTGGVTTIVLQEETFGVG 413
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVI---------GVNAGDMPSYRVRKADTTVELPSGG 366
L FTPTV+ GRI L++ EVSE +P R+A TT+++ G
Sbjct: 414 LRFTPTVMENGRINLKVAPEVSELSPTGVAVTAANTNGTTILPLITTRRASTTLQVRDGQ 473
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+ + GL+K ++ + +P + ++P++G+L R++ F R++TE+ TP LVKP+
Sbjct: 474 SFAIGGLIKSNVTGSLKALPGIGELPVIGSLARSTSFQRDQTELLFVVTPRLVKPL-PAQ 532
Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIY 452
P D + + + + +
Sbjct: 533 YPMPTDSFGPINRGELYLNGNMEGRR 558
>gi|152994347|ref|YP_001339182.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
gi|150835271|gb|ABR69247.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
Length = 463
Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats.
Identities = 119/441 (26%), Positives = 210/441 (47%), Gaps = 14/441 (3%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+ +FL S A L P E+ + + + ++ +++ +N+ +L +P
Sbjct: 9 VVPLLFGVFLLSGVSRAAYLEPMNNTSESQSVIGTSAYQQVEVSGNVNLVVNRGKLLTLP 68
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+ VL+++P A + SP +++F K G ++ + + + +L L + D+ L
Sbjct: 69 QNAAKVLIANPDIASFQMPSPDNVFVFAKKSGSTSLYALDDENQVILALTLNAGYDLNSL 128
Query: 124 EMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
+ + + SN++V + + +++ G V+T Q ++R ++ E F+ S
Sbjct: 129 TKQVAQEVPGSNVQVGPATENGLIVRGSVQTPQQAKRVIDSVEAFVGGDATGSAGAGSQT 188
Query: 183 -KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKF 238
+++N L + Q+ + V I EV R++ +GF G + + D
Sbjct: 189 LRIVNQLKVELSSQINISVRIVEVSRNLSSSLGFSWDALFDNGKYFARNSASLFDATTGA 248
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ G + + VL AL LAEP LTA+SG++A F GG+ +
Sbjct: 249 FTGSGVTNAVFGGASGNLGGVLSALSNDGLASILAEPNLTAMSGETAGFAVGGEVPIVII 308
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVR 354
+ ++ YGV++ TPT+LSP RI L I EVS+ + + +P+++VR
Sbjct: 309 --TNNNVTIEYKQYGVIMRMTPTLLSPNRISLHIAPEVSDLTEEGAVELQGLTVPAFKVR 366
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ADTTVEL SG + LAG+L+ + Q G+P L IP LG LF + +EETE+ I A
Sbjct: 367 RADTTVELASGQSFALAGMLRSSVSQTVTGVPGLRSIPGLGRLFESETNQKEETELVIIA 426
Query: 415 TPFLVKPVAMRDLSRPDDHYS 435
T ++V P + DL P S
Sbjct: 427 TAYVVAPTSSGDLQTPAKGIS 447
>gi|78186671|ref|YP_374714.1| type II secretion system protein [Chlorobium luteolum DSM 273]
gi|78166573|gb|ABB23671.1| type II secretion system protein [Chlorobium luteolum DSM 273]
Length = 486
Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats.
Identities = 114/454 (25%), Positives = 194/454 (42%), Gaps = 54/454 (11%)
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
+ + + + ++P V V V DP AD ++ +P +YL GK G N+ + GK +
Sbjct: 38 RVPVGESRVYRLPQPVTRVAVGDPEVADYIMLNPSEIYLLGKKTGSTNLTVWDRKGK-VS 96
Query: 111 NLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
+ + + R++A ++ LR + I++ +VL G + A L +
Sbjct: 97 SRSLRVSRNVAPIQELLRVVLPGETGIQLYASGHALVLSGSASDAMAADTAYRLVIAYSG 156
Query: 170 QSGRNQYANSS--------------------------------------------SKKVM 185
+ S+ + +V+
Sbjct: 157 GTVPALNPESALLAGSAGASGSVGAPGISGIHDSAPAAPSALPGAAASRSPAARDTPRVV 216
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
NLL I QV L+V IAEV R ++ +G + S+ S
Sbjct: 217 NLLKIRDPQQVRLEVRIAEVSRSHIESLGIGWTQGRGSTQGSLMTGFVSNATLDLLLKTG 276
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
+ G + + A ++ ++ LAEPT+ A+SG+ F GG+ + G+
Sbjct: 277 GMPGSTEGNRLT--VDAEQKKGLVKILAEPTIVAMSGEEGYFLVGGKVYTP-TLGTNGSV 333
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVE 361
YGV L TPTVL GRI L++ EVSEP V + +P++++ A TTV+
Sbjct: 334 DYVERTYGVGLRCTPTVLDSGRISLKVAPEVSEPLKEAVTAGTSTSLPAFKLSYASTTVQ 393
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +V+ GLL+D++ ++K +PLLS IP+LG+LFR++ N+E TE+ + P LVK
Sbjct: 394 MQEGENLVIGGLLRDNLTEVKRSVPLLSSIPVLGSLFRHTEMNKETTELMVIVRPTLVKA 453
Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
P D + + F +++ G K
Sbjct: 454 GNP-APELPTDRFVPPAPLELFIEGKLDGSGGAK 486
>gi|294012433|ref|YP_003545893.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
gi|292675763|dbj|BAI97281.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
Length = 499
Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats.
Identities = 126/470 (26%), Positives = 219/470 (46%), Gaps = 27/470 (5%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
T T + L ++ + A + +N + + + + + ++ +P +
Sbjct: 5 TVHTAAAKPLLGPAIALGLAVAVAAAPTSALNAAPASMQDNAIL-LSVGGSKVINLPAKM 63
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
DV++ DP DV V S +YL K G+ V +GK + + + + ++ ++
Sbjct: 64 SDVVIGDPDVVDVHVRSQNQLYLIAKKAGETTVFATATNGKVLFSGTVRVGNNLTSIDDM 123
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L+ + +++I V ++ V+L G + +D+ A L++ F+ + V++
Sbjct: 124 LKLAMPNADIAVNKMNGMVLLTGTIAAPEDAAEAERLTQAFVGKEVT----------VVS 173
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------SSSGPSKSFAAD 233
L A QV L+V IAEV RD+ +IG + + +
Sbjct: 174 RLRTATPLQVNLQVKIAEVSRDVGHKIGMNWKSQDLTGGKWAGGIGGGTRDAITFNSGGG 233
Query: 234 FGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
F ++GG + VL E + TLA+P LT++SG++ASF +GG+
Sbjct: 234 GTFNFTADGGYSLGGVARVLGLDIGAVLDLAESSGLATTLAQPNLTSLSGETASFLAGGE 293
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
+ Y + + G S+ YGV L FTPTVL+ GRI LR++ VS V++ +P+ R
Sbjct: 294 YPYTVSNGTQG-NSIEFKQYGVQLAFTPTVLADGRISLRVRPTVSSLDFSVDS-SVPALR 351
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R A+TTVEL SG ++AGLL +D +P + +PILG+LF++ F R ETE+ I
Sbjct: 352 SRTAETTVELGSGQAFMIAGLLNNDTANSISKVPGIGNLPILGSLFKSRNFQRHETELVI 411
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
TP+LVKP+ D+ P D + ++ + F + + A
Sbjct: 412 VVTPYLVKPMNASDVRLPTDGFRNANEGQGLFLQQGHDGISGAHAPMPSR 461
>gi|27378611|ref|NP_770140.1| hypothetical protein blr3500 [Bradyrhizobium japonicum USDA 110]
gi|27351759|dbj|BAC48765.1| blr3500 [Bradyrhizobium japonicum USDA 110]
Length = 550
Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats.
Identities = 132/534 (24%), Positives = 216/534 (40%), Gaps = 73/534 (13%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-----KKISIGLNK 56
R +T +++ + +VA P A AA S + +++ + +NK
Sbjct: 5 RVSGKTVARLLAFGVMGLGAAVALCGPADRAEAADRRGSSGGVFVSEMNDVQRVRVVVNK 64
Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
+V ++ P DV S +Y+ GK G NVIL KQ+ LD+ +
Sbjct: 65 SRTFKVDTAFATIIAGSPDIVDVKSLSDHMIYVQGKQTGTTNVILFDSAMKQIGVLDVEV 124
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
D +L+ +R +RV VVL G ++RA+ ++ + +++ G
Sbjct: 125 VIDTGNLQQNIRTGTGMQGVRVSASEGQVVLSGTAVDAVAAERAMAIATSTVAKGGT--- 181
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------- 219
V+N +++A QV L+V EV R+ + +G S
Sbjct: 182 -------VVNAMSVAAPQQVMLEVRFLEVSREAGRNLGVNLSAANANGTNIGNSGLGRVT 234
Query: 220 ------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--------------------- 252
G + + A G + G V G L
Sbjct: 235 AAGRTPIGGINTANGPLGAGGGPVGSAPTGSLPVLGTLGTLAGTAGGIAPAPFGTLLTSL 294
Query: 253 -----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GA 304
S + ++ ALE R LAEP LT +SG +A F +GG+ + +T
Sbjct: 295 IRTSNGGSVDMLISALETKGLARRLAEPNLTTLSGDAARFLAGGEFPVPIPTQTTNGFPT 354
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTV 360
++ +GV L F PTVLS G I LR++ VSE + + +P+ R A TTV
Sbjct: 355 ITIEYKKFGVELAFVPTVLSRGVINLRVEPSVSELDFANAVTIQGTTVPALTRRDARTTV 414
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
EL G + +AGLL+ +Q +P + +P++G LF + + +EET++ I TP LV
Sbjct: 415 ELRDGQSFAIAGLLQTRNRQDVSQLPWIGSVPVIGTLFSSKSYQQEETDLVIIVTPRLVA 474
Query: 421 PVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
P A + L+ P D +D F ++ + + G + KG G I
Sbjct: 475 PAAPGQQLASPLDSRLPANDVDFFLNGQME-VRKRYDDYVNSGGDVKGPYGHII 527
>gi|148557761|ref|YP_001265343.1| type II and III secretion system protein [Sphingomonas wittichii
RW1]
gi|148502951|gb|ABQ71205.1| type II and III secretion system protein [Sphingomonas wittichii
RW1]
Length = 526
Score = 288 bits (738), Expect = 9e-76, Method: Composition-based stats.
Identities = 134/502 (26%), Positives = 208/502 (41%), Gaps = 67/502 (13%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
MR + I + P A AA + + + + ++ + ++
Sbjct: 1 MRASMKFLAGGALITAIALAPVAASAAVRPSRGAAAVRTATIG-KPSETTTLSIGSGQMI 59
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ + D+ V+D ADV V S +YLFGK G+ V G + + + + +I
Sbjct: 60 ALSAPISDLFVADDKIADVQVRSTTQLYLFGKGAGETAVYATDKAGNVVWSSIVRVGSNI 119
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
++ L+ + ++ I ++ V+L G V + D + A +L E F+ +
Sbjct: 120 TSVDTMLKLAMPEAAITATTMNGIVLLTGTVASPSDVEEAQKLVEQFVGKET-------- 171
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--------------- 225
+V+N L A QV+L V IAEV R+ K IG ++ G
Sbjct: 172 --QVVNRLKSAVPLQVSLHVKIAEVSREFAKSIGINLLNRDTTGGFLFGVAQGRNFGSIG 229
Query: 226 ------------------------------------PSKSFAADFGGKFVSEGGDFSVKG 249
++ D GK G F + G
Sbjct: 230 NLDTSAFPKLDASSLYGLPAGSLSLPFNPATGQFIAGGTAYTFDKLGKGAGSGTSFGLAG 289
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
+ E + TLA+P LTAISG++ASF +GG+ GA SV
Sbjct: 290 KFLGMDLAAAIDLAEADGLVTTLAQPNLTAISGETASFLAGGEIPIPLA-QGLGAVSVEF 348
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSG 365
YGV L FTPTVL GRI +R++ EVS+ N +P R+A+TTVEL SG
Sbjct: 349 KQYGVSLSFTPTVLGDGRISIRVRPEVSQLTDAGSVRLNGFTIPGITTRRAETTVELGSG 408
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
++ GLL + + P L +PILGALFR++ F R ETE+ I TP+LVKPV+ +
Sbjct: 409 QAFMIGGLLSNAQNSNVDKAPFLGDLPILGALFRSNGFKRNETELMIVVTPYLVKPVSPQ 468
Query: 426 DLSRPDDHYSVEDDAKAFFFNR 447
++ P D + +
Sbjct: 469 QIALPTAGLRAATDGERLIAGQ 490
>gi|193213115|ref|YP_001999068.1| type II and III secretion system protein [Chlorobaculum parvum NCIB
8327]
gi|193086592|gb|ACF11868.1| type II and III secretion system protein [Chlorobaculum parvum NCIB
8327]
Length = 472
Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats.
Identities = 116/451 (25%), Positives = 191/451 (42%), Gaps = 53/451 (11%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
I + + + ++ ++ V V +P AD ++ +P +YL GK G N+I+
Sbjct: 30 IAAPSTYRVSEGESRVYRMGSPIKRVAVGNPEIADYIILNPTELYLLGKKTGATNLIVWD 89
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
+G + + + R++ ++ +R + + +I + +VL G V ++ A
Sbjct: 90 QNGNS-ASTPLQVSRNVEPIKDLIRTVLPNETDIHIYSSGPALVLAGTVSNSLAAETAYR 148
Query: 163 LSETFLSQS-------------------------------------GRNQYANSSSKKVM 185
L + +L G S V+
Sbjct: 149 LVKGYLGGDVPADNPEKTLTNTKPADSYAGTASLSGIVKSASLVAGGPTGAEGSGMSGVV 208
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
NLL + QV L+V IAEV + ++ +GF+ + G + + FVS
Sbjct: 209 NLLKVRDAQQVRLEVHIAEVSKTFMQALGFEWA------GRIGNVSGGLMTGFVSNETIN 262
Query: 246 SVKGVLDRFSFETVLHALER--ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ D S + A I+ LAEPT+ A+SGQ F GG+ ++ G
Sbjct: 263 LLLK--DNTSHSQRIKAENECDNGWIKILAEPTIVAMSGQEGYFLVGGKIYVP-TITANG 319
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVE 361
A YGV L FTPTVL GRI L++ EVSEP G + +++ A TTV+
Sbjct: 320 AVDYQERTYGVGLRFTPTVLDAGRISLKVAPEVSEPPTSAADGTGTLLAFKTSYASTTVQ 379
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +V+ GLLKD I + + +PLL IP+LGALFR+++ E TE+ + P LV+
Sbjct: 380 MNEGQNLVIGGLLKDKITETLKAVPLLGDIPLLGALFRHTKIESENTELLVVVRPTLVEA 439
Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
P D + + FF ++
Sbjct: 440 SDTPP-ELPTDRFIPPTQKELFFDGKLQGSR 469
>gi|297581608|ref|ZP_06943530.1| flp pilus assembly protein [Vibrio cholerae RC385]
gi|297534015|gb|EFH72854.1| flp pilus assembly protein [Vibrio cholerae RC385]
Length = 469
Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats.
Identities = 115/457 (25%), Positives = 202/457 (44%), Gaps = 37/457 (8%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ + +N+ I+ V D+QDV VSDP V S R + + GK++G +++++G +
Sbjct: 21 AESPLVLHVNQNQIITVDGDIQDVFVSDPKIVVVHAPSSRHVMVSGKDIGSTDLLIMGEN 80
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + + + + D++ LE ++ ++NIR +V+ G V + + ++
Sbjct: 81 AQTLAHYKLNVNADLSELERAVQHAFPEANIRFAYSKGAIVVMGEVANPLQAHEVLSMAS 140
Query: 166 TFL-----------------------SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
F S + + K V+N L G QV + + I
Sbjct: 141 GFARGLQKPEQQTLDMPANSASSGRDSGAAKPGGGIGDYKFVVNQLKTQGSAQVNISIRI 200
Query: 203 AEVRRDILKQIGFQHSITGSS-SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
E+ R +Q+G + S G+ G + G ++ ++ + ++
Sbjct: 201 VEMERATSEQLGLRWSSIGNMRWGTWDTLQTALGATPGNKFPTNTLPSGNGQHGLNVIID 260
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
AL + + LAEP LTA SG++A+F SGG+ + + G S+ +G+ L TPT
Sbjct: 261 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVDNGDDG-VSIEFKKFGIALEVTPT 319
Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
VLS +I L + EVS E + + ++P R+A TT+EL G + LAGL++
Sbjct: 320 VLSNRQISLTVAPEVSTLSRENSVSIAGVEVPGIETRRATTTIELADGQSFALAGLVRTY 379
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSV 436
E +P L +IPIL F + F E+E+ I AT LV+P +L+ P D Y
Sbjct: 380 QDHKVEALPFLGEIPILAPFFSTNSFKNSESELVIIATARLVEPSSDPAELTTPLDRYRP 439
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
+ F +++ + E G G+ Y
Sbjct: 440 ASRFERLFLHKM-------GETHDESTRLFGHYGYNY 469
>gi|227819321|ref|YP_002823292.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234]
gi|227338320|gb|ACP22539.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234]
Length = 496
Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats.
Identities = 113/451 (25%), Positives = 208/451 (46%), Gaps = 34/451 (7%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
G +++++ N I ++ D+++ DVV S +++++ GK G N+ +
Sbjct: 46 TGSVQQVTLAPNDTITVRTGKPFGDLVIGSAEMIDVVPLSDQSLFIRGKQTGATNISVYD 105
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ + +D+ + D + + +R + +RV +D + L G VR + QR +E+
Sbjct: 106 DNKALVGVIDVRVAADFSEVASAIRSTAPSAQVRVFNSNDRIRLTGTVRDAVELQRVMEI 165
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-- 221
++++ S++ V+N L +A QV L+V + E R + +G S G
Sbjct: 166 AQSY------------SAEPVLNQLRVAESQQVMLEVRVIEASRQTGRDLGIGWSGQGRN 213
Query: 222 ----------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ + AA G + + + V++ALE+
Sbjct: 214 GIGKATTSQGITVDDDGNLARTLGDAAGAATGMQPFGQLIAKVLEISGGQIDIVINALEQ 273
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVL 323
+R LA+P L A+SG++ASF +GG+ ++ + +T AT +GV L F+P VL
Sbjct: 274 KGLVRRLAQPNLIAMSGETASFHAGGEVPIQSTVANGATLATETDYRPFGVRLTFSPVVL 333
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
G I L+I+ EVSE ++ P + R A TTV L G + +AGLL+ + +
Sbjct: 334 DGGLISLKIEPEVSEIDPSISVNGNPGFISRAASTTVALRDGQSFAMAGLLQSVNAKDVQ 393
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKA 442
+P L ++P++GALFR++ F + E+++ I TP +V+P DL P + +D +
Sbjct: 394 QLPWLGQVPVIGALFRSTSFLKRESDLVIVVTPHIVRPSKPGEDLYSPLEQTRSSNDVEL 453
Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
F + ++ G+ KG G
Sbjct: 454 FALG-ILEVDKDMLRRFRNGEGVKGPYGHRL 483
>gi|296284552|ref|ZP_06862550.1| type II and III secretion system protein [Citromicrobium
bathyomarinum JL354]
Length = 502
Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats.
Identities = 131/476 (27%), Positives = 210/476 (44%), Gaps = 40/476 (8%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
A L + + + + + I + + K ++ VP + DV +++ + AD+
Sbjct: 1 MLLGAALCAAPLSIVPTMADAQSVVRPTQDIVLSIGKGELINVPGSMADVFIANDSIADI 60
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V S R +YLFGK+ G+ V G + ++ + +I L+ L + + I V
Sbjct: 61 QVKSQRQLYLFGKSGGETTVYASNAAGDVIWAANVRVGSNIGSLDQMLALAMPQAKISVA 120
Query: 140 MVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ +TV+L G V +D+ A L FL V+ L A QV L
Sbjct: 121 TMGSNTVLLTGTVANPEDAAEAERLVSAFLGDET----------NVIARLTTATPLQVNL 170
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------------ADFGG 236
+V AEV R +++ IG + +++G +D
Sbjct: 171 QVRFAEVSRSLVRAIGANLLSSDATNGFQFGVTRGRNFAPQYTPGGPVGVGVTGGSDGST 230
Query: 237 KFVSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
G ++ G+ L E + TL++P LTA+SG++A F +GG+
Sbjct: 231 VITGNGTGATIAGLGSLFGMDLAAALDLAETNGLVSTLSQPNLTALSGETADFLAGGEFP 290
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPS 350
GATSV +YGV L +TPTVL+ GRI +R+ EVSE + +P+
Sbjct: 291 IPIS-QGLGATSVEYRNYGVKLTYTPTVLANGRISIRVSPEVSELSSQGAVSLDGVQIPA 349
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
R+A TTVEL SG + ++AGL+ ++ Q + P L +PILG LFR++ F + ETE+
Sbjct: 350 LITRRASTTVELGSGQSFMIAGLMTNNSQSTIDKAPGLGDVPILGNLFRSNSFRKGETEL 409
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
I TP+LVKPV D+ P D Y+ D F G + + +
Sbjct: 410 VIVITPYLVKPVDGNDIRLPTDGYNSPDTLSQLGFKETVPQGGVPDRPGPTTSDRQ 465
>gi|149186255|ref|ZP_01864569.1| type II secretion system protein [Erythrobacter sp. SD-21]
gi|148830286|gb|EDL48723.1| type II secretion system protein [Erythrobacter sp. SD-21]
Length = 522
Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats.
Identities = 127/470 (27%), Positives = 208/470 (44%), Gaps = 51/470 (10%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
++I + + + ++ VP ++ DV +S+ ADV V S R +YLFGK+ G+ V
Sbjct: 30 QSVTSPSQEIVLSIGRGELVNVPGNMADVFISNENVADVQVKSRRQLYLFGKSGGETTVY 89
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQR 159
G + ++ + +I ++ L + ++ I V + + V+L G V +D+
Sbjct: 90 ASNAAGDIIWAANVRVGSNIGSIDQMLSLAMPEAKINVATMGNNTVLLTGTVAAPEDAAD 149
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
A L + ++ + V++ L +A QV L+V IAEV R +++ IG +
Sbjct: 150 AQSLVQAYVGEGT----------NVISRLRMATPLQVNLQVRIAEVSRSVVRAIGVNLAT 199
Query: 220 TGSSSGPSKSFAADFGGKF-----------------------------------VSEGGD 244
SSSG G ++ G
Sbjct: 200 VDSSSGFQFGVGQGRGAVSQFQPSFVNPVTGERIQGPLAVGQEFEGEGATIIDQITPGST 259
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
G L L E + TL++P LTA+SG++A F +GG+ G
Sbjct: 260 LGAFGNLLGLDIGAALDLAETQGLVTTLSQPNLTALSGETAEFLAGGEFPIPLS-QGLGT 318
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTV 360
T++ +YGV L +TPTVL+ GRI +R++ EVSE +N +P+ R+A+TTV
Sbjct: 319 TTIEYKNYGVSLAYTPTVLANGRISIRVRPEVSELSSQGSITLNGFQVPALITRRAETTV 378
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
EL SG + ++AGLL ++ Q E P L +P++G LFR++ + + ETE+ I TP+LVK
Sbjct: 379 ELGSGQSFMIAGLLSNNSQNSIEKAPGLGDVPVIGNLFRSTTYRKGETELVIVVTPYLVK 438
Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
PV D+ P D Y + + R G
Sbjct: 439 PVNANDIRLPTDGYLKPTEMQRLIALREGDSEAGLVRPMPSANGTGANPG 488
>gi|37680194|ref|NP_934803.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
gi|37198941|dbj|BAC94774.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
Length = 462
Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats.
Identities = 108/457 (23%), Positives = 198/457 (43%), Gaps = 41/457 (8%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
K+I + + + ++ + +++ V + D T ADV S R+ +FG VG+ +++++G
Sbjct: 20 AHAAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVG 79
Query: 104 HDGKQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
+G+ + + + ++ ++ LE L I ++ V D++ + G V + + + +
Sbjct: 80 KEGEAIAHYRLNVKNSGLSQLEHHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILS 139
Query: 163 LSETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVT 201
L F ++ S V+N L I QV + +
Sbjct: 140 LVNNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIR 199
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
+ E+ + +++G + + G +F + ++ +F ++
Sbjct: 200 MVEMAKSTSEELGIRWQSVNPNW----MLGVSPGNQFATGIDLTDPDNLIKESAFMGIID 255
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
AL + + LAEP LTA SG+ A F GG+ + ++ + V +GV L TPT
Sbjct: 256 ALASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPT 313
Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
VLS RI L + VS + I +N D+P R A TT+EL G + LAGLL+
Sbjct: 314 VLSENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTS 373
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436
+ + IP L ++P +GALFR ++ + E E+ I AT LV+P + + P DH+
Sbjct: 374 EENSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRA 433
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
+ F + + G G+ Y
Sbjct: 434 PTRLERLLFGELE--------GHTDTPKLIGDYGYRY 462
>gi|320156053|ref|YP_004188432.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus
MO6-24/O]
gi|319931365|gb|ADV86229.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus
MO6-24/O]
Length = 462
Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats.
Identities = 108/457 (23%), Positives = 198/457 (43%), Gaps = 41/457 (8%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
K+I + + + ++ + +++ V + D T ADV S R+ +FG VG+ +++++G
Sbjct: 20 AHAAKQIDLEVGQSRLIPLSQEMRSVYIVDSTIADVKTPSARSALVFGAKVGKTDLVIVG 79
Query: 104 HDGKQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
+G+ + + + ++ ++ LE L I ++ V D++ + G V + + + +
Sbjct: 80 KEGEAIAHYRLNVKNSGLSQLERHLETLYPSHRIALQSVGDSIAVAGTVASPEMAADILS 139
Query: 163 LSETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVT 201
L F ++ S V+N L I QV + +
Sbjct: 140 LVNNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIR 199
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
+ E+ + +++G + + G +F + ++ +F ++
Sbjct: 200 MVEMAKSTSEELGIRWQSVNPNW----MLGVSPGNQFATGIDLTDPDNLIKESAFMGIID 255
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
AL + + LAEP LTA SG+ A F GG+ + ++ + V +GV L TPT
Sbjct: 256 ALASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPT 313
Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
VLS RI L + VS + I +N D+P R A TT+EL G + LAGLL+
Sbjct: 314 VLSENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTS 373
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436
+ + IP L ++P +GALFR ++ + E E+ I AT LV+P + + P DH+
Sbjct: 374 EENSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRA 433
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
+ F + + G G+ Y
Sbjct: 434 PTRLERLLFGELE--------GHTDTPKLIGDYGYRY 462
>gi|27365651|ref|NP_761179.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6]
gi|27361799|gb|AAO10706.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6]
Length = 462
Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats.
Identities = 108/457 (23%), Positives = 198/457 (43%), Gaps = 41/457 (8%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
K+I + + + ++ + +++ V + D T ADV S R+ +FG VG+ +++++G
Sbjct: 20 AHAAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVG 79
Query: 104 HDGKQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
+G+ + + + ++ ++ LE L I ++ V D++ + G V + + + +
Sbjct: 80 KEGEAIAHYRLNVKNSGLSQLERHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILS 139
Query: 163 LSETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVT 201
L F ++ S V+N L I QV + +
Sbjct: 140 LVNNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIR 199
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
+ E+ + +++G + + G +F + ++ +F ++
Sbjct: 200 MVEMAKSTSEELGIRWQSVNPNW----MLGVSPGNQFATGIDLTDPDNLIKESAFMGIID 255
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
AL + + LAEP LTA SG+ A F GG+ + ++ + V +GV L TPT
Sbjct: 256 ALASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPT 313
Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
VLS RI L + VS + I +N D+P R A TT+EL G + LAGLL+
Sbjct: 314 VLSENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTS 373
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436
+ + IP L ++P +GALFR ++ + E E+ I AT LV+P + + P DH+
Sbjct: 374 EENSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRA 433
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
+ F + + G G+ Y
Sbjct: 434 PTRLERLLFGELE--------GHTDTPKLIGDYGYRY 462
>gi|162147491|ref|YP_001601952.1| type II and III secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545598|ref|YP_002277827.1| type II and III secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786068|emb|CAP55650.1| type II and III secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533275|gb|ACI53212.1| type II and III secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 473
Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats.
Identities = 127/489 (25%), Positives = 212/489 (43%), Gaps = 36/489 (7%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+ R M + S + A A + + + + I ++++
Sbjct: 3 ISRRVLPMAAFAGMSLCLAGADARSTHPAASGSVAHGAHAV-----LGIEEGAGKLVKLD 57
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL---IERDI 120
++ V+DP +V SP +M++FG GQ VI G + ++
Sbjct: 58 GIATNIFVADPKVVEVRAASPDSMFVFGVGAGQTTVIATSRSGGVVARYTVVVLPSSYRA 117
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+ L + + I ++ + G + + +++A+E + + + GR S
Sbjct: 118 SALRRDVGQQNPRVRIG-TGADGSIGIEGTETSSESAEQALEGATALVGKGGRVGDYAS- 175
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--SSSGPSKSFAADFGGKF 238
+ G QV LKV I E+ R +++++G + ++ ++
Sbjct: 176 ---------VPGSIQVNLKVRIVEMSRSLVRELGVEWQSVNALGTAAAIGISTSNPLAAL 226
Query: 239 VSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
+E F+ ETV+ AL + I +LAEP LT +SGQ+ASF GG++
Sbjct: 227 TTEQSAFNFLSRFSAAGRPVTVETVIDALSQDGLIHSLAEPNLTTVSGQAASFIVGGEYP 286
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--------VNAG 346
S + V YG+ L F PTVL+ GRI L ++ EVS
Sbjct: 287 IPVSSYNNNIN-VQYKQYGISLAFVPTVLADGRISLHVRPEVSALSTQGAVTLSEANGNL 345
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+P+ VR+ADTTVEL SG + +AGL++D G+P L IP+LGALF++S F +
Sbjct: 346 QIPALTVRRADTTVELGSGQSFAIAGLMQDSTNMQGLGLPFLGDIPVLGALFKSSSFQKN 405
Query: 407 ETEIFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
E+E+ I TP+LV+PV L PDD+++ D F R N IY V ++
Sbjct: 406 ESELVIVVTPYLVRPVDNESMLHSPDDNWAPPGDLDRIFLMRQN-IYKYAGKKNVARRDV 464
Query: 466 KGAIGFIYK 474
GF+ +
Sbjct: 465 NSDAGFMVE 473
>gi|85373131|ref|YP_457193.1| type II secretion system protein [Erythrobacter litoralis HTCC2594]
gi|84786214|gb|ABC62396.1| type II secretion system protein [Erythrobacter litoralis HTCC2594]
Length = 574
Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats.
Identities = 128/520 (24%), Positives = 225/520 (43%), Gaps = 72/520 (13%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
+ ++R + ++ P A + A + + + + + + + ++
Sbjct: 25 KTMKRRLIAKALVASLAALPVAAGPAQVAHAQSI--------VKPSQDVVLSIGRGELIS 76
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
VP + DV +++ ADV + S R +Y+FGK+ G+ + G + ++ + +I
Sbjct: 77 VPGAMADVFIANDAVADVQIKSQRQLYVFGKSGGETTIYASNSAGDVIWAANVRVANNID 136
Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
L+ L + ++ I + +TV+L G V +D+ A L FL
Sbjct: 137 SLDQMLALAMPEAKIATATMGTNTVLLTGTVAAPEDAAEAERLVTAFLGDGA-------- 188
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKF 238
V++ L +A QV L+V IAEV R ++++IG + ++ G + +FG
Sbjct: 189 --NVISRLKMATPLQVNLQVRIAEVSRSLVREIGSNLTTRDTTDGFLFGVNRGRNFGSIT 246
Query: 239 VSEGGDF----------------------------------------------SVKGVLD 252
+ F + G L
Sbjct: 247 DIDTSGFPQLDASAQFGLPPGSLSLPFNPATGQFVVGGANFPVASNNPGQTALNFAGRLF 306
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+ ER I TL+ P LTA+SG++A+F +GG+ G TS+ ++
Sbjct: 307 GLDIASAFDVGERLGLITTLSNPNLTALSGETATFLAGGEFPIPIS-QGLGTTSIEYRNF 365
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTI 368
GV L ++PTVL+ GRI +R++ EVSE +N +P+ R+A+TTVEL SG +
Sbjct: 366 GVSLAYSPTVLANGRISIRVRPEVSELSSQGAITLNGFQIPALTTRRAETTVELGSGQSF 425
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
++AGL+ + Q + P L +PI+G LFR++ F + ETE+ I TP+LVKPV D+
Sbjct: 426 MIAGLMSNSSQNTVDKAPGLGDVPIIGNLFRSTSFRKGETELVIVVTPYLVKPVDGTDIK 485
Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
P D Y ++ + N + + Q+ G
Sbjct: 486 LPTDGYQTPNELQRTLGFLENDGKTGGDRPKPTAQDRDGP 525
>gi|19749313|gb|AAL98683.1| Y4xJ [Sinorhizobium fredii]
Length = 411
Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats.
Identities = 128/458 (27%), Positives = 196/458 (42%), Gaps = 54/458 (11%)
Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
+ AV + I +S L K + +P + V+DP AD S
Sbjct: 1 MSAAAENNGDEAVPRAAPNSINATLNLSSSLGK--TVHLPAPAATIFVADPPIADYQAPS 58
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
RT+++FGK G+ ++ + +G+ + L +++ + I L LR + D I V
Sbjct: 59 NRTIFVFGKKFGRTSLFALDENGEALAELHVVVTQPIGDLRAMLRDQVGDYPIHVSYTPR 118
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
+L G + A ++E FL ++N + +AG QV L V +A
Sbjct: 119 GAILSGTAPNAEVVDIAKRVTEQFLGDGA----------PIVNNIKVAGSLQVNLSVRVA 168
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
EV R LK +G S G G GG + D S VL
Sbjct: 169 EVSRSSLKALGINLSAFGQFGNFKVGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLD 228
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
AL + LAEP LTA+SG++ASF +GG+ F PT
Sbjct: 229 ALAKEHIASVLAEPNLTAMSGETASFLAGGE-------------------------FVPT 263
Query: 322 VLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
VL I + ++ EVSE + VN +P+ R+ADT VEL SG + V+ GL++ +
Sbjct: 264 VLDNNLINIHVKPEVSELSLQGAVQVNGIAVPAVSTRRADTVVELASGQSFVIGGLIRRN 323
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSV 436
+ P L +IPILGALFR+S F +EE+E+ I TP++V+P +S P D +
Sbjct: 324 VNNDISAFPWLGRIPILGALFRSSSFQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAP 383
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
+ + A + + KG +GFI +
Sbjct: 384 A----------LGTPPRARAAISTDAPSVKGDLGFIIE 411
>gi|237800794|ref|ZP_04589255.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331023652|gb|EGI03709.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 432
Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats.
Identities = 124/436 (28%), Positives = 198/436 (45%), Gaps = 37/436 (8%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
G I + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I +
Sbjct: 26 GAEGTIDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKTAGQTSLIALDS 85
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
+G++ L + + A + L+ S R+ + V+ G V+ + ++ L
Sbjct: 86 EGRETAALSLAVSSGTAAVTRPLKALHPQSRARISASGNRVIASGSVQDVGEATDLNAL- 144
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + +N AG QV ++V AEV R L + G + ++
Sbjct: 145 ---------LSSEGQNFQSSVNSATYAGAAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 195
Query: 225 GPSKSFAADFGGKFVSEGGD---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
S + G S + + +L AL+ + LAEP +TA++
Sbjct: 196 TFSFGLLTGGSLAADAASGASNVISAGLTSGNVNIDAMLEALQSNGVLEVLAEPNITAMT 255
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS +
Sbjct: 256 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 314
Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
N +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L
Sbjct: 315 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 374
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
FR+ RF R ETE+ I TP+LV+PV R + P D
Sbjct: 375 FRSKRFQRNETELVILITPYLVEPVKERVAATPLDKQRATS------------------- 415
Query: 458 SEVEGQNYKGAIGFIY 473
+ G GA GF
Sbjct: 416 TASAGPRSGGAFGFYM 431
>gi|269105132|ref|ZP_06157826.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268160582|gb|EEZ39081.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 442
Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats.
Identities = 115/426 (26%), Positives = 192/426 (45%), Gaps = 38/426 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
+I+I V +++ + V ++ V +SDP AD V + +FGK +G
Sbjct: 13 IISIYSVIASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIG 72
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
N+ + ++G ++ N +++ + + ++ + D+NI + + VVL G V Q
Sbjct: 73 HTNLFIFDNEGNELANRKVIVNKSLREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQ 132
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKV 200
+ T LS+ + N + ++N + + QV +K+
Sbjct: 133 VKDEINNIVGTLLSKKSNDFNFNLETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKL 192
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+IAEV L+QIG Q++ G + G + +F +V+
Sbjct: 193 SIAEVSHSFLEQIGVQYNSIGHAPGVFVNPLTNFSAS-----------------DILSVI 235
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
A+ + LAEP L+ ISG+SASF GG+ T+ + T+VT ++GV L
Sbjct: 236 TAIGNDGIGQVLAEPNLSVISGESASFLVGGELPVVTIVDNG--TNVTYKEFGVKLELLA 293
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
V +I L + EVS + D+P+ + R+A TTVEL G + VL GLL +
Sbjct: 294 KVRKDDKITLSLMPEVSSLDTQYSNDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTED 353
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
++ +P + IP+LGALFRNSR R +TE+ I AT LV+P+ + P
Sbjct: 354 KERLNKVPYIGDIPVLGALFRNSRTERNKTELIIVATVNLVQPIHPSQVQLPT--IRKTT 411
Query: 439 DAKAFF 444
FF
Sbjct: 412 TLDRFF 417
>gi|326797327|ref|YP_004315147.1| type II and III secretion system protein [Marinomonas mediterranea
MMB-1]
gi|326548091|gb|ADZ93311.1| type II and III secretion system protein [Marinomonas mediterranea
MMB-1]
Length = 464
Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats.
Identities = 115/445 (25%), Positives = 208/445 (46%), Gaps = 18/445 (4%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEAN--AAVINISDVEIGKGKKISIGLNKVIILQVPV 64
F T+ ++ S + A + A+ + + E+ ++ + +N+ +L +P
Sbjct: 6 YFLTLFAVCSVQSTLAFATYDVDQPADNNSRIAESRFEEVAVSGQVKLHVNQGTLLNLPK 65
Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
VL+++P A + SP +++F K G + + + ++ + + D+ L
Sbjct: 66 AASKVLIANPEVASFQMPSPDNVFVFAKAPGDTTLYALDENNDVIIAVTLTSGYDLEGLT 125
Query: 125 MTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK- 182
+ + + + ++V +D +++ G V+T Q +++ + E++L S
Sbjct: 126 RQVAKEVPGTEVQVGPATDKGLIVRGTVQTPQQAKQVISSVESYLGASTSANGRGGRGGQ 185
Query: 183 -----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--G 235
+++N L +A QV + V I EV R + +GF ++ +
Sbjct: 186 SNQSLRIVNQLKVALSSQVNISVRIVEVSRSLTHALGFSWDTLFDNNTGFIRNGSSLFDA 245
Query: 236 GKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
V +G S+ + VL AL LAEP LTA+SG++A F GG+
Sbjct: 246 STGVFDGSGISLGVLGGTIGDVGGVLSALSNDGMASILAEPNLTAMSGETAGFAVGGEVP 305
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPS 350
V + + ++ YGV++ TPT+LSP RI L I EVS+ N +P+
Sbjct: 306 I--VIQTNNSVTIEYKQYGVIMRMTPTLLSPNRISLHIAPEVSDLSDDGSVVLNDTTIPA 363
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++VR+A+TTVEL SG + LAG+L+ + Q G+P L IP+LG +F +EETE+
Sbjct: 364 FKVRRANTTVELASGQSFALAGMLRSSVSQTVSGVPGLRSIPVLGRMFETEINQKEETEL 423
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYS 435
I AT ++V+P + +L P S
Sbjct: 424 VIIATAYIVEPTSANNLQSPAQGIS 448
>gi|312621080|ref|YP_003993808.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
pilus assembly [Photobacterium damselae subsp. damselae]
gi|311872801|emb|CBX86892.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Photobacterium damselae subsp. damselae]
Length = 438
Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats.
Identities = 115/426 (26%), Positives = 192/426 (45%), Gaps = 38/426 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
+I+I V +++ + V ++ V +SDP AD V + +FGK +G
Sbjct: 9 IISIYSVIASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIG 68
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
N+ + ++G ++ N +++ + + ++ + D+NI + + VVL G V Q
Sbjct: 69 HTNLFIFDNEGNELANRKVIVNKSLREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQ 128
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKV 200
+ T LS+ + N + ++N + + QV +K+
Sbjct: 129 VKDEINNIVGTLLSKKSNDFNFNLETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKL 188
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+IAEV L+QIG Q++ G + G + +F +V+
Sbjct: 189 SIAEVSHSFLEQIGVQYNSIGHAPGVFVNPLTNFSAS-----------------DILSVI 231
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
A+ + LAEP L+ ISG+SASF GG+ T+ + T+VT ++GV L
Sbjct: 232 TAIGNDGIGQVLAEPNLSVISGESASFLVGGELPVVTIVDNG--TNVTYKEFGVKLELLA 289
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
V +I L + EVS + D+P+ + R+A TTVEL G + VL GLL +
Sbjct: 290 KVRKDDKITLSLMPEVSSLDTQYSNDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTED 349
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
++ +P + IP+LGALFRNSR R +TE+ I AT LV+P+ + P
Sbjct: 350 KERLNKVPYIGDIPVLGALFRNSRTERNKTELIIVATVNLVQPIHPSQVQLPT--IRKTT 407
Query: 439 DAKAFF 444
FF
Sbjct: 408 TLDRFF 413
>gi|56477528|ref|YP_159117.1| outer membrane channel protein [Aromatoleum aromaticum EbN1]
gi|56313571|emb|CAI08216.1| probable outer membrane channel protein,probably involved in pilus
assembly [Aromatoleum aromaticum EbN1]
Length = 566
Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats.
Identities = 127/535 (23%), Positives = 217/535 (40%), Gaps = 91/535 (17%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---- 77
+ + P + A VEI ++I + K +++ V V +L+ +P A
Sbjct: 35 TSSATPRVAVATTNGSPCGRVEIAPM--VTIPVGKSSVIRPEVPVTRILLGNPDNAQAAR 92
Query: 78 ---------------------------DVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
DV++ SP +YL GK+VG NV+L+ G
Sbjct: 93 PSAEPAKDDKGGQQAKQSDGRPGVAQVDVLLLSPNEIYLLGKSVGSTNVVLVDRSGGC-T 151
Query: 111 NLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
LD+ + D+ ++ L + D I+V D++VL G V RAVE++ ++
Sbjct: 152 ALDVTVAMDVTSVQGALTALLPDETGIKVSSAYDSLVLTGTVSDATKVDRAVEIASAYVR 211
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------------ 217
+ ++ +V+N+L++ QV L+V +AEV + ++ + G
Sbjct: 212 DGDGGENGRNA--RVLNMLSVGAPQQVMLEVKVAEVSKAVMDRFGIDFSRAYAAGDGTMI 269
Query: 218 ---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL-------------- 260
S P + G V G S+ + +
Sbjct: 270 RFLSGVFGGKSPVGGQVSGTVGARVGGGIVDSISNASGTSAITAPIGDATIGGDATKVPL 329
Query: 261 -----------HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307
A + ++ LAEPT+ AISGQ SF +GG+ + G +V
Sbjct: 330 ISGSNSTLIGVDAQKSDGLVKILAEPTVMAISGQEGSFLAGGKIFIPVSQNDGGTRTVTL 389
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADT 358
++GV + FTPTVL GRI L ++ EVSE +PS+ R+A T
Sbjct: 390 EEKEFGVSVKFTPTVLEGGRINLAVRPEVSELNREGVGLTAPGVNGLAILPSFTTRRAFT 449
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TV+L G + + GL+K++ + P L ++P++GALFR++ F + +E+ TP L
Sbjct: 450 TVQLRDGQSFAIGGLIKNNTTTNIKAFPFLGELPVIGALFRSTEFQTDRSELVFVITPRL 509
Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGF 471
VKP+ D + P D+Y + + ++ + G+ GF
Sbjct: 510 VKPL-PEDYALPTDNYVEPSRSDVIWRGKLEGKGPAPADHPDLLPGEENSARGGF 563
>gi|167836689|ref|ZP_02463572.1| RhcC2 [Burkholderia thailandensis MSMB43]
Length = 460
Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats.
Identities = 128/486 (26%), Positives = 223/486 (45%), Gaps = 43/486 (8%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
+R T T+ L P G +++ +L
Sbjct: 5 LRADLHTCMTIACAALVGFVPGA----------------HVHADPVGPVLTVAAGGGEML 48
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
++P V ++DP ADV V +P+++++ GK G + +G + + +L I++ D
Sbjct: 49 KLPEPAGAVFIADPDVADVHVPTPQSVFVLGKKAGTTTLFALGSNNRTILRETIVVNADT 108
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
L+ L + ++ + ++++ G V + D+ V+ + +L +
Sbjct: 109 PTLQRILDARFPNLHLTLTSAPGSLMVAGHVPSPSDADAVVQTLKPYLHEK--------- 159
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAAD 233
+ ++N + +A QV L+V + E+ R+I +Q+G S G+S F
Sbjct: 160 -ETLVNRMTLARPIQVHLRVRVTEIDRNITQQLGINWSAIGASGNFVGGLFNGRTLFDPT 218
Query: 234 FGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
+S G FSV G R+S + VL AL++ I LAEP LT +SG++ASF +GG
Sbjct: 219 SRLFNLSPTGAFSVLGGFHTSRYSVDGVLDALDQEGLITMLAEPNLTTMSGETASFLAGG 278
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGD 347
+ +TGA ++ +GV L FTPTVL+ RI L+++ EVSE + N
Sbjct: 279 EFPIPVSQDTTGAITIEFKPFGVSLDFTPTVLADNRISLKVRPEVSEIDPVNSVTSNGIR 338
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P+ VR+ +TTVEL SG + + GLL+ + +P L+++P+LG LF + + ++
Sbjct: 339 VPALTVRRVETTVELSSGQSFAIGGLLQSKTSDVLAELPGLARLPVLGKLFSSKNYLNDK 398
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
TE+ + TP++V+PV +L D + + R I + G
Sbjct: 399 TEVVVIVTPYVVQPVGPGELRDALDSVTQPSSDIEYVLQRAIGIDPLSG----DLPRLVG 454
Query: 468 AIGFIY 473
A GFIY
Sbjct: 455 AAGFIY 460
>gi|307293450|ref|ZP_07573296.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
gi|306881516|gb|EFN12732.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
Length = 499
Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats.
Identities = 118/428 (27%), Positives = 203/428 (47%), Gaps = 26/428 (6%)
Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
I + + ++ +P + DV++ DP DV V S +YL K G+ V +GK
Sbjct: 46 AILLSVGGSKVINLPAKMSDVVIGDPDVVDVHVRSQNQLYLIAKKAGETTVFATAINGKV 105
Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
+ + + + ++ ++ L+ + ++ I V ++ V+L G + +D+ A L++ F+
Sbjct: 106 LFSGTVRVGNNLTSIDDMLKLAMPNAEIAVNKMNGMVLLTGTIAAPEDAAEAERLTQAFV 165
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------- 221
+ V++ L A QV L+V IAEV +D+ +IG
Sbjct: 166 GKEVT----------VVSRLRTATPLQVNLQVKIAEVSKDVGHKIGMNWKSQDLTGGKWA 215
Query: 222 ------SSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ + + F ++GG + + VL E + TLA+
Sbjct: 216 GGIGGGTRDAITFNSGGGGTFNFTADGGYSLAGVARVLGLDLGAVLDLAESSGLATTLAQ 275
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P LT++SG++ASF +GG++ Y + + G S+ YGV L FTPTVL+ GRI LR++
Sbjct: 276 PNLTSLSGETASFLAGGEYPYTVSNGTQG-NSIEFKQYGVQLAFTPTVLADGRISLRVRP 334
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
V + + +P+ R R A+TTVEL SG ++AGLL +D +P + +PIL
Sbjct: 335 TV-SSLDFSVSSSVPALRSRTAETTVELGSGQAFMIAGLLNNDTANNINKVPGIGNLPIL 393
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
G+LF++ F R ETE+ I TP+LVKP+ D+ P D + ++ + F +
Sbjct: 394 GSLFKSRNFQRHETELVIVVTPYLVKPMNASDVRLPTDGFRNANEGQGLFLQQGQDGVSG 453
Query: 455 KEASEVEG 462
+
Sbjct: 454 ARSPMPSR 461
>gi|123443821|ref|YP_001007792.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090782|emb|CAL13664.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 453
Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats.
Identities = 106/417 (25%), Positives = 192/417 (46%), Gaps = 33/417 (7%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
+ + + + +++ ++ V VS AD + ++ ++ K G A IL
Sbjct: 30 ANAEPVYLSTGESYMIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQ 89
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
+ + IL++ I +R +S+I + + D+ +L G V T + + +
Sbjct: 90 NHHPIKKSAILVDNTITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASII 149
Query: 165 ETFLSQSGRNQYANSSSK-------------KVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+ + +V+N + + G +QV +K+TIAEV +D +
Sbjct: 150 GEAIGSEKTIASNSKKDSDGNSQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSE 209
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
IG S G+ SG + F + KF ++G ++HA+ + R
Sbjct: 210 NIGMDWSTIGNFSGSFQFFKPNGLNKFNAKG-------------ISALVHAINDDSIARV 256
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LAEP L+ +SG+SASF GG+ V+++ +T +T +G+ L+ V + RI ++
Sbjct: 257 LAEPNLSVLSGESASFLVGGELPL--VNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIK 314
Query: 332 IQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ EVS PS+R RKA TT+EL G + +L GL+ ++ + IP +
Sbjct: 315 LDEEVSSVDKVFNIDGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFI 374
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
IPILGA FRN+ + +TE+ + AT LV+PV+ +++ P ++ + FF
Sbjct: 375 GDIPILGAFFRNAETRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFFN 429
>gi|194335913|ref|YP_002017707.1| type II and III secretion system protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308390|gb|ACF43090.1| type II and III secretion system protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 510
Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats.
Identities = 106/502 (21%), Positives = 197/502 (39%), Gaps = 66/502 (13%)
Query: 9 FTMMSIFLFSSNP--SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
+ + L + P ++A P++ + + + + + + L + + + +
Sbjct: 15 MSALVALLVGTVPMATMASPEPVRRRDDSYVTVVSEMTAPSIYL-VPLGESRVYRFAQPI 73
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
+ V + DP AD ++ + +YL GK +G N+ + +G + + + + R L+
Sbjct: 74 KRVAMGDPKVADYIMLNRFEVYLLGKKMGSTNLAVWDQNGN-LTSSPVQVSRGTTALQAL 132
Query: 127 LRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS----- 180
L+ N I + + +VL G V ++ L ++ S + S+
Sbjct: 133 LKVLFPKENDIHLLALGPALVLSGSVSDALVAESVARLVRSYFGGSVSSGTPESALVGTD 192
Query: 181 ------------------------------------SKKVMNLLNIAGEDQVTLKVTIAE 204
++ V+NLL + QV L+V IA+
Sbjct: 193 SKPFTGIIEEMSKDVVFSKTESHSKETTTHGGESDSTRGVVNLLKVRDSQQVRLEVCIAQ 252
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
V R ++ +G + FVS ++ + + A
Sbjct: 253 VSRTFIESLGISFF-----KTSGDIQGSTLLSGFVSNATLNNLLLGRLGQANGIKMVADR 307
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGV 314
+ + + LAEPT+ +SG+ F GG+ ++ +D YGV
Sbjct: 308 KPSLFKVLAEPTIVTMSGKEGFFLVGGKIYVPVRVIDYSPINLQEYDKYYISYKEYLYGV 367
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVL 370
L F P VL GRI L++ +EVSEP +P +++ T V++ G +V+
Sbjct: 368 GLRFMPVVLDAGRISLKVVSEVSEPDTESATSGTKANLPLFKISTVSTNVQMNEGENLVI 427
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
GL D+ + +PLLS+IPILGALFR+++ N E+TE+ + P LVK + P
Sbjct: 428 GGLKLDNFANAIDSVPLLSEIPILGALFRDTKKNAEKTELMVIIRPTLVK-GSATMPELP 486
Query: 431 DDHYSVEDDAKAFFFNRVNKIY 452
D + F ++
Sbjct: 487 TDRVIPPTRKELFLDGKLEGSP 508
>gi|330876206|gb|EGH10355.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
Length = 437
Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats.
Identities = 124/436 (28%), Positives = 199/436 (45%), Gaps = 37/436 (8%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I +
Sbjct: 31 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 90
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
+G++ L + + A + L+ S R+ V+ G V+ + ++ L
Sbjct: 91 EGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 149
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + +N AG QV ++V AEV R L + G + ++
Sbjct: 150 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 200
Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
S G + S + + +L AL+ + LAEP +TA++
Sbjct: 201 TFSFGLLTGGGLAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 260
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS +
Sbjct: 261 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 319
Query: 342 G----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L
Sbjct: 320 TSTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 379
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
FR+ RF R ETE+ I TP+LV+PV R ++ P D
Sbjct: 380 FRSKRFQRNETELVILITPYLVEPVKARVVATPLDKQRAAS------------------- 420
Query: 458 SEVEGQNYKGAIGFIY 473
+ G GA GF
Sbjct: 421 TASAGPRSGGAFGFYM 436
>gi|330953268|gb|EGH53528.1| type III secretion component [Pseudomonas syringae Cit 7]
Length = 438
Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats.
Identities = 127/463 (27%), Positives = 205/463 (44%), Gaps = 37/463 (7%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
+S + L A N + G + + + + +L V V+V++P A
Sbjct: 5 ASVIRLLFLALSALLIAGGANAETIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIA 64
Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
D+ V SP +Y+FGK GQ ++I + +G++ L + + A + L+ S R
Sbjct: 65 DLQVVSPGVIYVFGKTAGQTSLIALDSEGRETATLSLAVSSGTAAVSRPLKALHPQSQAR 124
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
+ V+ G V+ + ++ L + + +N AG QV
Sbjct: 125 INASGSRVIASGAVQDVGEATDLNAL----------LSTEGQNFQSTVNSATYAGSAQVN 174
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD---FSVKGVLDRF 254
++V AEV R L + G + ++ S + G S
Sbjct: 175 IRVRFAEVSRSELLRYGVNWNALFNNGTFSFGLLTGGSLAADAASGASNVISAGLTSGNV 234
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
+ + +L AL+ + LAEP +TA++GQ+ASF +GG+ + V + + YGV
Sbjct: 235 NIDAMLEALQNNGVLEVLAEPNITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGV 293
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVL 370
L F+PT+L GRI L+++ EVS + N +PS+RVR+ADT VE+ SG T +
Sbjct: 294 SLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAI 353
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGL + + Q + +P+L +PILG+LFR+ RF R ETE+ I TP+LV+PV R + P
Sbjct: 354 AGLFQRESSQDMDKVPMLGDMPILGSLFRSKRFQRNETELVILITPYLVEPVKERVAATP 413
Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
D + G GA GF
Sbjct: 414 LDKQRAAS-------------------TAAAGPRSGGAFGFYM 437
>gi|253701800|ref|YP_003022989.1| type II and III secretion system protein [Geobacter sp. M21]
gi|251776650|gb|ACT19231.1| type II and III secretion system protein [Geobacter sp. M21]
Length = 451
Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats.
Identities = 109/431 (25%), Positives = 182/431 (42%), Gaps = 47/431 (10%)
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
++ +N+ ++L + + V ++D DV + + GK +G N+I+ + +
Sbjct: 33 TVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGSTNLIVWEENNENP 92
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
D+ + D +E +R + + +I V+ DTVVL G V ++A E+++ + +
Sbjct: 93 TFFDVRVVGDREAIESQIRDYAPNDDISVQYAQDTVVLSGKVANEMTGKKAEEIAKAYSA 152
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
KV+N + + QV L+V +A+V R LK++G + G ++ +
Sbjct: 153 -------------KVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGISAMVKGRTAEGFMN 199
Query: 230 FAADFGGKFVSEGGD---------------------------FSVKGVLDRFSFETVLHA 262
G F+V VL A
Sbjct: 200 LVGAPSGTSSVTNSSATRFTSTEASGIAGSIPGLGSFDPLDAFNVGVSYFPAGIGAVLQA 259
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTP 320
L + LAEP L SG+ +F +G + Y + S+ G +S+ GV L F P
Sbjct: 260 LSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIIFETVGVKLKFKP 319
Query: 321 TVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
VL G I L+I EVS + P R T VEL G +++LAGLL+++
Sbjct: 320 QVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGESLILAGLLQEEQI 379
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED 438
+ IPLL IPILGALFR+S+ + E ++ TP +VKP P D + +
Sbjct: 380 KTMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKPTPAGVATKLPTDAVTPAE 439
Query: 439 DAKAFF--FNR 447
+ + R
Sbjct: 440 EKGYDWIPLGR 450
>gi|289624387|ref|ZP_06457341.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646614|ref|ZP_06477957.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330868629|gb|EGH03338.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 429
Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats.
Identities = 122/436 (27%), Positives = 197/436 (45%), Gaps = 37/436 (8%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I +
Sbjct: 23 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 82
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
+G++ L + + A + L+ S R+ V+ G V+ + ++ L
Sbjct: 83 EGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + +N AG QV ++V AEV R L + G + ++
Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192
Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
S + S + + +L AL+ + LAEP +TA++
Sbjct: 193 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 252
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS +
Sbjct: 253 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 311
Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
N +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L
Sbjct: 312 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 371
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
FR+ RF R ETE+ I TP+LV+PV R ++ P D
Sbjct: 372 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS------------------- 412
Query: 458 SEVEGQNYKGAIGFIY 473
+ G GA GF
Sbjct: 413 TASAGPRSGGAFGFYM 428
>gi|330985203|gb|EGH83306.1| type III secretion component [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 429
Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats.
Identities = 121/436 (27%), Positives = 197/436 (45%), Gaps = 37/436 (8%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
G + + + + +L + V+V++P AD+ V SP +Y+FGK GQ ++I +
Sbjct: 23 GAKGTVDLAIGEGRVLHFSAPLDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 82
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
+G++ L + + A + L+ S R+ V+ G V+ + ++ L
Sbjct: 83 EGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + +N AG QV ++V AEV R L + G + ++
Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192
Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
S + S + + +L AL+ + LAEP +TA++
Sbjct: 193 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 252
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS +
Sbjct: 253 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 311
Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
N +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L
Sbjct: 312 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 371
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
FR+ RF R ETE+ I TP+LV+PV R ++ P D
Sbjct: 372 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS------------------- 412
Query: 458 SEVEGQNYKGAIGFIY 473
+ G GA GF
Sbjct: 413 TASAGPRSGGAFGFYM 428
>gi|87308911|ref|ZP_01091049.1| probable type II secretion system protein [Blastopirellula marina
DSM 3645]
gi|87288254|gb|EAQ80150.1| probable type II secretion system protein [Blastopirellula marina
DSM 3645]
Length = 540
Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats.
Identities = 114/497 (22%), Positives = 205/497 (41%), Gaps = 55/497 (11%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK----------- 49
MR L T +++ L + + + I A + +S +K
Sbjct: 3 MRNLSTALAT-LAMILSAGGIAFGQAQEILPAPNQLEQLSSPNAATLQKQFDLIDEVLEP 61
Query: 50 ---ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI--GH 104
S+ ++ I++ V V +++P +V SP M + G VGQ + L
Sbjct: 62 ELIFSLMTSQSKIVRTKSPVFRVAITNPAVVEVNEFSPTEMEVIGSAVGQTTMTLWFNNA 121
Query: 105 DGKQ--------MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
DG + N D + + L+ + S +++ ++D +++ G R ++
Sbjct: 122 DGTVSTLRYLIIVSNDDNRADLEYGKLQAHINEMFPYSRVQLFPIADKLIVRGQARDSKE 181
Query: 157 SQRAVELSETFLSQSGRNQYANSS----------------SKKVMNLLNIAGEDQVTLKV 200
+ + + N + + + ++NLL + GE QV LKV
Sbjct: 182 AAEILAVIGDQAVNQNGNISGSGTVNVGSVARLPDAEDLETTSLINLLEVPGEQQVMLKV 241
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+AE+ R +++G S+ S + + GG ++ +LD E +
Sbjct: 242 RVAELSRQAARELGMDFSVMEESFSIAHTIM----------GGAGNLSAILDGGDVELFI 291
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHF 318
A + + LAEPTL +SGQSASF +GG+ GA S + +G + F
Sbjct: 292 RAFSSNGSAKILAEPTLMTLSGQSASFIAGGEFAVPTAVGVGGIGAVSTSFRGFGTQVQF 351
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
PTV+ I L + VS ++ +P +R A TTV+L G + +AGL++D+
Sbjct: 352 MPTVMDKDMIRLSVAPSVSSINQSLSVDGVPGLDIRGAVTTVDLREGQWLAIAGLIQDEQ 411
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSV 436
+ + +PLL IP +GA F + R ETE+ I +P LV P+ + P +
Sbjct: 412 EASRSRLPLLGDIPYVGAAFGSQTTKRIETELVILVSPELVHPMERDQVPLYLPGMEVTE 471
Query: 437 EDDAKAFFFNRVNKIYG 453
+ + F ++ + G
Sbjct: 472 PTNKEFFLHQQIEGLPG 488
>gi|197106489|ref|YP_002131866.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium
zucineum HLK1]
gi|196479909|gb|ACG79437.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium
zucineum HLK1]
Length = 438
Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats.
Identities = 102/424 (24%), Positives = 179/424 (42%), Gaps = 21/424 (4%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
E + I + +K + ++ ++VS P A V S R+ Y+ G G N++
Sbjct: 31 RSEPAPRRSIHVPRDKSLSFRLAQPAARIVVSQPEIAKVTATSDRSFYVQGLEFGSTNML 90
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+ G G+ + LDI + D L+ L + +RV + + ++L G V +A
Sbjct: 91 VYGPGGRLLEVLDIRVGYDAEGLQQDLAAAFPNEPLRVRNLGEALMLTGEVTDTGVQYKA 150
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+++ + + +++ +++ QV L+V + E R L+ IG + +I
Sbjct: 151 EAIAQRY------------APDGLISRVSVRASQQVVLEVRVLEATRSALQDIGVEGAIG 198
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+S + + G + G + +L ALE +RTLA P L AI
Sbjct: 199 NNSWAVAFG---NGLIGASPAAGALGISGGWGDTRIDLMLTALEEKGVVRTLARPNLVAI 255
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
GQ A+F +GG++ Y V S+ YGV L FTP V G I L ++ EVS+
Sbjct: 256 PGQKATFHAGGEYPYP-VPQRDDLISLEFRKYGVELTFTPVVQDNGLIRLDVEPEVSQLD 314
Query: 341 IGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +P VR+ TTVEL G ++ + GL + + +P + +P+LG+
Sbjct: 315 FTNSLRVQGFTVPGLIVRRTHTTVELKPGESLAIGGLFQREYTNALRQVPGIGDVPVLGS 374
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
LFR++R+ + ETE+ + TP + R +
Sbjct: 375 LFRSARWKKAETELVVIVTPKFASTADMAAAEAMRTPPGREPTTPDLLLRGRALDKSITE 434
Query: 456 EASE 459
E +
Sbjct: 435 EGAP 438
>gi|320324504|gb|EFW80581.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. B076]
gi|320328376|gb|EFW84379.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 429
Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats.
Identities = 122/436 (27%), Positives = 197/436 (45%), Gaps = 37/436 (8%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
G + + + + +L V V+V++P AD+ V SP +Y+FG+ GQ ++I +
Sbjct: 23 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGQAAGQTSLIALDS 82
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
DG++ L + + A + L+ S R+ V+ G V+ + ++ L
Sbjct: 83 DGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + +N AG QV ++V AEV R L + G + ++
Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192
Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
S + S + + +L AL+ + LAEP +TA++
Sbjct: 193 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 252
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS +
Sbjct: 253 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 311
Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
N +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L
Sbjct: 312 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQHESSQDMDKVPMLGDMPILGNL 371
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
FR+ RF R ETE+ I TP+LV+PV R ++ P D
Sbjct: 372 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS------------------- 412
Query: 458 SEVEGQNYKGAIGFIY 473
+ G GA GF
Sbjct: 413 TASAGPRSGGAFGFYM 428
>gi|284048526|ref|YP_003398865.1| type II and III secretion system protein [Acidaminococcus
fermentans DSM 20731]
gi|283952747|gb|ADB47550.1| type II and III secretion system protein [Acidaminococcus
fermentans DSM 20731]
Length = 590
Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats.
Identities = 98/461 (21%), Positives = 189/461 (40%), Gaps = 31/461 (6%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A I + +S+ +N ++ + + V +P ADV + S L GK
Sbjct: 13 TAAILGMTGQALAATTLSVAVNGSRYMEASG-ITRLAVGNPEIADVRLLSGNDFLLVGKK 71
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G +++ +G++ ++ + A ++ I ++V+M++ V+L G V+
Sbjct: 72 PGSTTLLVWSDNGRE--EYNVFVSGSDAGTAQAIQEAIGYPEVQVQMMNGKVLLRGRVQN 129
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKK-------------VMNLLNIAGEDQVTLKV 200
+ A+++++ +L G + K ++++L++ QV L
Sbjct: 130 QYEHDSAIKVAQMYLGSGGGTTSTAQAGGKEGTAAQGGTTDSNIIDMLDMTEPTQVRLVA 189
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEGGDFSVKGVLDRF- 254
I E+ K +G Q+ + + + G F + + +G F
Sbjct: 190 QIIEINTSAEKDLGIQYWSPTLGDNTTGNSNSTDITRGTPGLFYAGENFYKQRGSFGWFG 249
Query: 255 ----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ L AL + R L+ P++T +SGQ A GG+ S+ G ++
Sbjct: 250 SHLSNLNASLQALVTSGKARILSRPSITTMSGQKAKILIGGRIPIP-TSAGDGQIAIDWR 308
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGG 366
DYGV L P V + +I ++ EVS G N +P+ R+A+ + + SG
Sbjct: 309 DYGVKLDIEPVVDADNKITSKVHAEVSTLDYGHSVKENDFSIPAIASREAEAMINVRSGM 368
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
T+ + GLL + + IPLL IPI+G FR++ R+ E+ I TP LV +
Sbjct: 369 TMAIGGLLNSEDSKSVSKIPLLGDIPIIGQFFRHTSTTRDNRELLILITPLLVGDDSPVS 428
Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
+S+ + +V+ K ++ + ++ G
Sbjct: 429 MSQRMKENYEASERYERNAEKVDVNTPVKPGNDKQERDIWG 469
>gi|50119734|ref|YP_048901.1| hypothetical protein ECA0789 [Pectobacterium atrosepticum SCRI1043]
gi|49610260|emb|CAG73703.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
Length = 478
Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats.
Identities = 124/452 (27%), Positives = 219/452 (48%), Gaps = 27/452 (5%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
T +++ LF++ V + A + E+ + + + +++ +LQ+
Sbjct: 15 TCKRLLAAGLFNAVLPVTLTTMMLPA--TTMAAGVSEVAETNVVHLTVHQGRLLQLDALP 72
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
VLV+DP A + SP ++++ K+VG + + +G + + ++ E D+ L
Sbjct: 73 DSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKALGER 132
Query: 127 LRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----------- 174
++R ++I++E + V++ G V T QD++R ++ + ++S S
Sbjct: 133 MKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASAGGQGGGGGGGEKL 192
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
++ SS KV+N L I Q+ ++V + EV R + ++GF + + S+ + S +
Sbjct: 193 PGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMSAGSGS 252
Query: 235 GGKFVSEGGD------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+ S R +L A+ + LAEP LTA+SG++A+F
Sbjct: 253 RLNLFNATTGRFANPTDSGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETAAFA 312
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---- 344
+GG+ + + + S+ YGV+L TPT+LS RI L I EVSE +
Sbjct: 313 AGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQLE 370
Query: 345 -AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS +P+ G LF +
Sbjct: 371 GGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFESEST 430
Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
++EETE+ I AT ++V+PV DL P
Sbjct: 431 SQEETELVIIATAYVVEPVNAGDLQTPGQGVK 462
>gi|197117446|ref|YP_002137873.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
gi|197086806|gb|ACH38077.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
Length = 451
Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats.
Identities = 113/429 (26%), Positives = 187/429 (43%), Gaps = 45/429 (10%)
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
++ +N+ ++L + + V ++D DV + + GK +G N+I+ + +
Sbjct: 33 TVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGSTNLIVWEENNDKP 92
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
D+ + D +E +R + +I V+ DTV+L G V ++A E+++ + +
Sbjct: 93 TFFDVRVVGDREAIESQIRDYAPKDDISVQYAQDTVILSGKVANEMTGKKAEEIAKAYSA 152
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
KV+N + + QV L+V +A+V R LK++G + G ++ +
Sbjct: 153 -------------KVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGLSAIVKGRTAEGFTN 199
Query: 230 FAADFGGK----------FVSEGGDFSVKGVLDRFSFE-----------------TVLHA 262
G F S G+ V + F+ VL A
Sbjct: 200 LVGAPSGTSRNTESTPTRFTSTEGNGIVGNIPGIGGFDPLNAFNVGVSYFPAGIGAVLQA 259
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTP 320
L + LAEP L SG+ +F +G + Y + S+ G +S+ GV L F P
Sbjct: 260 LSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIVFETVGVKLKFKP 319
Query: 321 TVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
VL G I L+I EVS + P R T VEL G ++VLAGLL+++
Sbjct: 320 QVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGESLVLAGLLQEEQI 379
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED 438
+ IPLL IPILGALFR+S+ + E ++ TP +VKP P D + E+
Sbjct: 380 KNMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKPTPAGVATKLPTDAVTPEE 439
Query: 439 DAKAFFFNR 447
+ + R
Sbjct: 440 EKGYDWIPR 448
>gi|253687068|ref|YP_003016258.1| type II and III secretion system protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251753646|gb|ACT11722.1| type II and III secretion system protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 478
Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats.
Identities = 126/455 (27%), Positives = 220/455 (48%), Gaps = 27/455 (5%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+ T +++ LF++ V + A +S I ++ + +N+ +LQ+
Sbjct: 12 FRGTCKRLLAACLFNAVLPVTLTTMMLPATTLAAGVSTAPI--TDEVHLTVNQGRLLQLA 69
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
VLV+DP A + SP ++++ K+VG + + +G + + ++ E D+ L
Sbjct: 70 DTPDSVLVADPNIASFELPSPGNLFVYAKSVGVTTLYAMDENGNVINAIRLVSEHDLKAL 129
Query: 124 EMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-------- 174
++R ++I++E + V++ G V T QD++R ++ + ++S S
Sbjct: 130 GERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASSGGQGGGGGGG 189
Query: 175 ---QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
++ SS KV+N L I Q+ ++V + EV R + ++GF + + S+ + S
Sbjct: 190 EKLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMSAG 249
Query: 232 ADFGGKFVSEGGD------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ + S R +L A+ + LAEP LTA+SG++A
Sbjct: 250 SGSRLNLFNATTGRFSNPTDSGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETA 309
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
+F +GG+ + + + S+ YGV+L TPT+LS RI L I EVSE +
Sbjct: 310 AFAAGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSV 367
Query: 345 ----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS +P+ G LF +
Sbjct: 368 QLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFES 427
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
++EETE+ I AT ++V+PV DL P
Sbjct: 428 EATSQEETELVIIATAYVVEPVNAGDLQTPGQGVK 462
>gi|145299828|ref|YP_001142669.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142852600|gb|ABO90921.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 461
Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats.
Identities = 112/457 (24%), Positives = 192/457 (42%), Gaps = 38/457 (8%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ +++ + +L V+D V++ V S + + ++G+ VG+ ++++ D
Sbjct: 14 AAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTAQD 73
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G+ + + + + D+A L+ R+ S + +V+ G V + + + + E
Sbjct: 74 GRTLGHYRVQVVADLAPLKQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVE 133
Query: 166 TFLSQSGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLKVT 201
F + V+N L +AG DQ+ + V
Sbjct: 134 AFAKGIQPQGVPSGPVAPAQPQSGNQDEGAAVAGGGSGQYANVINQLRLAGSDQINISVR 193
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
I E++R +Q+G + S G G +F S G D ++
Sbjct: 194 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 249
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
AL + + LAEP LTA SG++A+F SGG+ + + G + +G+ L TPT
Sbjct: 250 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 308
Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
+L RI L + EVS E + + +P R+ TT+EL G + LAGL++
Sbjct: 309 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 368
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436
Q E +P L +IP L F ++ F +E+E+ I AT LV+P LS P DHY
Sbjct: 369 RNQSSEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 428
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
+ FF + G E + G G+ Y
Sbjct: 429 PSRFERRFFTDM----GSTERPGAQATRLFGNYGYSY 461
>gi|251789646|ref|YP_003004367.1| type II and III secretion system protein [Dickeya zeae Ech1591]
gi|247538267|gb|ACT06888.1| type II and III secretion system protein [Dickeya zeae Ech1591]
Length = 474
Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats.
Identities = 124/432 (28%), Positives = 209/432 (48%), Gaps = 32/432 (7%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
+ + + +I +I + +N+ +LQ+ VL++DP A + SP +++F
Sbjct: 27 SATTLPVAAVTQIEATSEIRLNINQGRMLQLDHIPDSVLIADPAIASFELPSPGNVFVFA 86
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGM 150
K VG + + DG+ + + +++E D+ L+ LRR D+ I++E V + V++ G
Sbjct: 87 KGVGNTTLYAMDVDGQVVSAIHLVVEHDLDALKERLRREFPDAQIQLEASVPNGVIVRGS 146
Query: 151 VRTIQDSQRAVELSETFLSQSGRN--------------QYANSSSKKVMNLLNIAGEDQV 196
V T QD+++ ++ + ++ S + ++S+S V+N L + Q+
Sbjct: 147 VETPQDAKKVIDSVQAWVGASASSRGSAGGGGGGGSAMPASSSTSPNVVNQLKVRTPSQI 206
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----------FS 246
++V + EV R + ++GF + + + F + F S +
Sbjct: 207 NIRVRVVEVSRKLTHELGFNWDSSLNRGRNTIGFGSGALSNFFSATSNTFSREAGSASLG 266
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
S T+L AL LAEP LTA+SG++A+F +GG+ + + + S
Sbjct: 267 YNYTGSDGSLGTLLSALNSQGMASVLAEPNLTAMSGETAAFAAGGEVPIVLI--TGNSVS 324
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVE 361
+ YGV+L TPT+LS RI L I EVSE + +P+ VR+ADTTVE
Sbjct: 325 IDYKSYGVILRMTPTLLSANRISLHIAPEVSELTSVGSVQLEGGSTIPALTVRRADTTVE 384
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
L SG + LAG+L+ Q G+P LS IP+LG F + EETE+ I AT ++V P
Sbjct: 385 LASGQSFALAGMLRSSNSQTVAGVPGLSGIPLLGRAFERESTSSEETELVIIATAYVVAP 444
Query: 422 VAMRDLSRPDDH 433
V+ L P
Sbjct: 445 VSAGTLQTPGQG 456
>gi|148259497|ref|YP_001233624.1| type II and III secretion system protein [Acidiphilium cryptum
JF-5]
gi|146401178|gb|ABQ29705.1| type II and III secretion system protein [Acidiphilium cryptum
JF-5]
Length = 491
Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats.
Identities = 123/466 (26%), Positives = 194/466 (41%), Gaps = 37/466 (7%)
Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
P + A + E + + ++I ++ + +V V+DP V S T+
Sbjct: 44 PAAASPARHATMRPAEAARARGLTIEQGSGRLITLKGSAANVFVADPGVVAVRPASAHTL 103
Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIE---RDIAHLEMTLRRFIADSNIRVEMVSDT 144
++FG G V + G + L + + A + R + + + ++
Sbjct: 104 FVFGTAPGFTTVAVTDAQGHAVATLHVAVTPKTYPAAAIRAGATRSAPGARLSISSAANG 163
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
VV+ G V T + ++ + KV+N + QV LKV IA+
Sbjct: 164 VVVRGNVPTPVQDYQIMQQAHLIAGTGA----------KVVNQTEVRLPQQVALKVRIAQ 213
Query: 205 VRRDILKQIGFQHSITGSS-------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
+ R I +Q+G G+ G S + G ++ + + +
Sbjct: 214 MSRTITQQLGINWQSAGNGISVGKFLFGFSALDVLNGSSPATPAAGSYNAGLSVGGGAID 273
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
+VL AL LAEPTLTA+SGQSASF GG V G +V +GV L
Sbjct: 274 SVLDALNSDNLAHILAEPTLTALSGQSASFIDGGSFPVP-VPGQNGQVTVQYKKFGVQLK 332
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV--------NAGDMPSYRVRKADTTVELPSGGTIV 369
F P VL G I L +Q VS P + +PS + A TTV + SG T+
Sbjct: 333 FRPVVLDNGSIILHVQPTVSSPTTQNAFQIAVAGTSIVVPSLSTQSASTTVVIGSGQTLA 392
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLS 428
+AGLL + Q + +P L +P+LGA FR+ +NR+E E+ I TP+LVKPV L
Sbjct: 393 IAGLLSNSSNQTDKSVPGLGDMPVLGAAFRDDNYNRQEQELVILVTPYLVKPVNNAGQLM 452
Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
PD+ +S + + +R + + G GFI +
Sbjct: 453 TPDEGWSPPNQIQRIVLHRDSGGARREIVLP-------GQAGFILR 491
>gi|261820214|ref|YP_003258320.1| type II and III secretion system protein [Pectobacterium wasabiae
WPP163]
gi|261604227|gb|ACX86713.1| type II and III secretion system protein [Pectobacterium wasabiae
WPP163]
Length = 475
Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats.
Identities = 126/452 (27%), Positives = 217/452 (48%), Gaps = 30/452 (6%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
T ++ LF++ V + P A V ++ + +++ +L +
Sbjct: 15 TCKRLLIASLFNAVLPVMLMSPAATQAAGV-----SVAPVTDEVHLTVHQGRLLHLDALP 69
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
VLV+DP A + SP ++++ KNVG + + +GK + + ++ E D+ L
Sbjct: 70 DSVLVADPNIASFELPSPGNLFVYAKNVGTTTLYAMDENGKVINAIRLVSEHDLKALSER 129
Query: 127 LRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ---------- 175
++R ++I++E + V++ G V T QD++R ++ +T+++ S
Sbjct: 130 IKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQTYINASSNGAQGGGGGGDQL 189
Query: 176 -YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
++ +S KV+N L I Q+ ++V + EV R + ++GF + + S+ + + +
Sbjct: 190 PGSSETSGKVVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTAGSGS 249
Query: 235 GGKFVSEGGD------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+ S R +L A+ + LAEP LTA+SG++A+F
Sbjct: 250 RLNLFNATTGRFANPTDSGFLNFGRSRLGGLLTAMNQQGMATVLAEPNLTAMSGETAAFA 309
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---- 344
+GG+ + + + S+ YGV+L TPT+LS RI L I EVSE +
Sbjct: 310 AGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQLE 367
Query: 345 -AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS IP+ G LF +
Sbjct: 368 GGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSGIPMFGRLFESEST 427
Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
N EETE+ I AT ++V+PV DL P
Sbjct: 428 NHEETELVIIATAYVVEPVNAGDLQTPGQGIR 459
>gi|71733713|ref|YP_274717.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
1448A]
gi|71554266|gb|AAZ33477.1| type III secretion component, putative [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 437
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 118/401 (29%), Positives = 191/401 (47%), Gaps = 18/401 (4%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I +
Sbjct: 31 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 90
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
DG++ L + + A + L+ S R+ V+ G V+ + ++ L
Sbjct: 91 DGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 149
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + +N AG QV ++V AEV R L + G + ++
Sbjct: 150 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 200
Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
S + S + + +L AL+ + LAEP +TA++
Sbjct: 201 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 260
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS +
Sbjct: 261 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 319
Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
N +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L
Sbjct: 320 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 379
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
FR+ RF R ETE+ I TP+LV+PV R ++ P D
Sbjct: 380 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS 420
>gi|149176581|ref|ZP_01855194.1| putative outer membrane channel for pilus assembly CpaC
[Planctomyces maris DSM 8797]
gi|148844694|gb|EDL59044.1| putative outer membrane channel for pilus assembly CpaC
[Planctomyces maris DSM 8797]
Length = 590
Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats.
Identities = 118/471 (25%), Positives = 193/471 (40%), Gaps = 39/471 (8%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
+R + + L + + P + + E K+ + IL
Sbjct: 8 IRVKRLPVLVTLVCSLIALSAYAQDEQPAPPGASEPVVQVSSEKM---KLEVTEKFSKIL 64
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ P ++ V DPT V +P + + G +++ +GK + L+ + D
Sbjct: 65 KFPGKIKRVDGFDPTVLSVSALTPNELRIQALVPGVTTLVITDENGK-VYTLETFVSGDA 123
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
HL+ LR S++ V D+VVL G V + VE++E F
Sbjct: 124 RHLQAYLRELFPTSSVTAIKVQDSVVLRGWVTEPEAITEMVEIAEQFF------------ 171
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------------S 224
V+N + +AG QV LKV I EV+R ++Q+G S +
Sbjct: 172 PNGVLNQMKLAGVQQVLLKVKIMEVQRSKIRQLGVNWLFLNQSGYAYSTPGTLVPITGIN 231
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
P A + + G V F+ + AL++ ++ LAEP L SG+
Sbjct: 232 VPFGGPPALTASQNLISGTSLGFGLVDGSSIFQAFIEALKKEALLKILAEPELVTTSGRP 291
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340
A+ SGG+ V S G ++ ++GV + P VL GR+ L +Q EVSE
Sbjct: 292 ANLLSGGEFP-ILVPQSLGTVTIEWREFGVRMEAVPIVLGNGRLRLEVQPEVSERDFSNA 350
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ V +P VR+A+T VE+ G T+V+AGL+ P L ++P++GA FR
Sbjct: 351 VQVAGTTVPGLTVRRANTAVEMNFGETMVIAGLISSRKTAETSKTPFLGELPVVGAAFRR 410
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN 449
R+ ETE+ I TP LV P+ + P + D + + +
Sbjct: 411 VRYTEGETELVIMVTPELVSPLKSGQVPPGGPGLFTATPTDRELYLDGVLE 461
>gi|330830432|ref|YP_004393384.1| protein transporter, outer membrane secretin (secretin) family
[Aeromonas veronii B565]
gi|328805568|gb|AEB50767.1| Protein transporter, outer bacterial membrane secretin (Secretin)
family [Aeromonas veronii B565]
Length = 465
Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats.
Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 38/469 (8%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A ++ + + + +++ + +L V D V++ V S + + ++G+
Sbjct: 6 AILLAMLPLWAAAAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHSPSDQQLLIYGRK 65
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
VG ++++ DG+ + + + + D+A LE R+ S + +V+ G V +
Sbjct: 66 VGHTDLVVTALDGRTLGHYRVTVVADLAPLEQLARQHFPQSRLTFSESGGAIVVAGEVTS 125
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSS------------------------SKKVMNLLN 189
+ + + E F A S+ V+N L
Sbjct: 126 PLQAHEILSMVEGFAKGLQPQSVAQSTVMAPSPQAGNQDEGAAVAGGGSGQYANVINQLR 185
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
+AG DQ+ + V I E++R +Q+G + S G G +F S G
Sbjct: 186 LAGSDQINISVRIVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPLERGSWTG 241
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
D ++ AL + + LAEP LTA SG++A+F SGG+ + + G +
Sbjct: 242 KKDVVYINAIIDALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEF 300
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSG 365
+G+ L TPT+L RI L + EVS E + + +P R+ TT+EL G
Sbjct: 301 KKFGISLELTPTLLDNNRISLTVSPEVSTLSRENSVTIAGVVVPGIETRRTTTTIELADG 360
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AM 424
+ LAGL++ Q E +P L +IP L F ++ F +E+E+ I AT LV+P
Sbjct: 361 QSFALAGLVRSHRNQNNEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDP 420
Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
LS P DHY + FF + G ++ + G G+ Y
Sbjct: 421 LSLSTPLDHYRAPSRFERLFFTDM----GSTQSPAAQTTRLFGNYGYSY 465
>gi|149909547|ref|ZP_01898201.1| general secretion pathway protein D [Moritella sp. PE36]
gi|149807452|gb|EDM67403.1| general secretion pathway protein D [Moritella sp. PE36]
Length = 432
Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats.
Identities = 113/405 (27%), Positives = 189/405 (46%), Gaps = 38/405 (9%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
K +++ + ++ ++ V ++DP AD V + +FGK +G ++I+ +
Sbjct: 11 AQKIVNLSEGEAKTIKSIKEIASVFIADPEIADYQVIDANKVVVFGKKIGSTSIIVFDEN 70
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G + N ++I + + H++ ++ ++++ + V D VVL G+V T Q+ +
Sbjct: 71 GDTITNNKLVINKSLVHIQQQIQLKYPNADVTIYNVGDQVVLSGIVATEQEKDDINIIVG 130
Query: 166 TFLSQ---------SGRNQYANSSSK--------KVMNLLNIAGEDQVTLKVTIAEVRRD 208
L++ + ++N + +A QV +K++IAEV
Sbjct: 131 ELLNKKSDDYIIQWESTGTDTKYEMEFMKRRHFAGIVNNIEVAAVKQVNVKLSIAEVSHS 190
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L+ G ++S G +SG + F +V+ A+ +
Sbjct: 191 FLENFGIEYSSIGQTSGTFVNLVTKFSAS-----------------DIASVITAIADDSV 233
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+ LAEP L+ ISG+SASF GG+ TV T T+V +YGV L VL +I
Sbjct: 234 GQILAEPNLSVISGESASFLVGGELPVVTVVDGT--TNVLYKEYGVRLSLMAKVLRDDKI 291
Query: 329 GLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
L + EVS + ++P+ + R+A TTVEL G + VLAGLL + + + IP
Sbjct: 292 ILSLSPEVSTLDNQYSSGTYNLPALKTRRARTTVELGDGQSFVLAGLLNTEDVESIKKIP 351
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
L IPILGALFR+S R +TE+ I AT LVKP+ + P
Sbjct: 352 FLGDIPILGALFRSSSTQRNKTELIIVATVNLVKPIHASQVQLPT 396
>gi|298487093|ref|ZP_07005143.1| type II/III secretion system protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298158336|gb|EFH99406.1| type II/III secretion system protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 437
Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats.
Identities = 124/436 (28%), Positives = 199/436 (45%), Gaps = 37/436 (8%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I +G
Sbjct: 31 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALGS 90
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
+G++ L + + A + L+ S R+ V+ G V+ + ++ L
Sbjct: 91 EGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 149
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + +N AG QV ++V AEV R L + G + ++
Sbjct: 150 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 200
Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
S + S + + +L AL+ + LAEP +TA++
Sbjct: 201 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 260
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS +
Sbjct: 261 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 319
Query: 342 G----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L
Sbjct: 320 TITLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 379
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
FR+ RF R ETE+ I TP+LV+PV R ++ P D
Sbjct: 380 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS------------------- 420
Query: 458 SEVEGQNYKGAIGFIY 473
+ G GA GF
Sbjct: 421 TASAGPRSGGAFGFYM 436
>gi|88866586|gb|ABD57354.1| FlpC [Aeromonas salmonicida subsp. salmonicida A449]
Length = 479
Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats.
Identities = 112/457 (24%), Positives = 192/457 (42%), Gaps = 38/457 (8%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ +++ + +L V+D V++ V S + + ++G+ VG+ ++++ D
Sbjct: 32 AAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTAQD 91
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G+ + + + + D+A L+ R+ S + +V+ G V + + + + E
Sbjct: 92 GRTLGHYRVQVVADLAPLKQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVE 151
Query: 166 TFLSQSGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLKVT 201
F + V+N L +AG DQ+ + V
Sbjct: 152 AFAKGIQPQGVPSGPVAPAQPQSGNQDEGAAVAGGGSGQYANVINQLRLAGSDQINISVR 211
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
I E++R +Q+G + S G G +F S G D ++
Sbjct: 212 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 267
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
AL + + LAEP LTA SG++A+F SGG+ + + G + +G+ L TPT
Sbjct: 268 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 326
Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
+L RI L + EVS E + + +P R+ TT+EL G + LAGL++
Sbjct: 327 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 386
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436
Q E +P L +IP L F ++ F +E+E+ I AT LV+P LS P DHY
Sbjct: 387 RNQSSEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 446
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
+ FF + G E + G G+ Y
Sbjct: 447 PSRFERRFFTDM----GSTERPGAQATRLFGNYGYSY 479
>gi|227326302|ref|ZP_03830326.1| hypothetical protein PcarcW_02904 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 479
Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats.
Identities = 121/456 (26%), Positives = 216/456 (47%), Gaps = 28/456 (6%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+ T +++ LF++ V + A + ++ + +N+ +L +
Sbjct: 12 FRGTCKRLLAAGLFNAVLPVTLTTMMLPA--TTLAAGVSVAPVTDEVRLTVNQGRLLHLN 69
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
VLV+DP A + SP ++++ K+VG + + +G + + ++ E D+ L
Sbjct: 70 ALPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKAL 129
Query: 124 EMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-------- 174
++R ++I++E + V++ G V T QD++R ++ + ++S S
Sbjct: 130 GERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASSGGGGQGGGGG 189
Query: 175 ----QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
++ SS KV+N L I Q+ ++V + EV R + ++GF + + S+ + +
Sbjct: 190 GERLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTA 249
Query: 231 AADFGGKFVSEGGDFSVKGV------LDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ + R +L A+ + LAEP LTA+SG++
Sbjct: 250 GSGSRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGET 309
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
A+F +GG+ + + + S+ YGV+L TPT+LS RI L I EVSE +
Sbjct: 310 AAFAAGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGS 367
Query: 345 -----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS +P+ G LF
Sbjct: 368 VQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFE 427
Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
+ ++EETE+ I AT ++V+PV DL P
Sbjct: 428 SESTSQEETELVIIATAYVVEPVNAGDLQTPGQGVK 463
>gi|117618977|ref|YP_855991.1| protein transporter, outer bacterial membrane secretin (secretin)
family protein [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117560384|gb|ABK37332.1| protein transporter, outer bacterial membrane secretin (secretin)
family [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 465
Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats.
Identities = 113/457 (24%), Positives = 193/457 (42%), Gaps = 38/457 (8%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ +++ + +L V D V++ V S + + ++G+ VG+ ++++ D
Sbjct: 18 AAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTALD 77
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G+ + + + + D+A L+ R+ S + +V+ G V + + + + E
Sbjct: 78 GRTLGHYRVQVVADLAPLKQLARQHFPQSRLSFSESGGAIVVAGEVTSPLQAHEILTMVE 137
Query: 166 TFLSQSGRNQYANSSSKK------------------------VMNLLNIAGEDQVTLKVT 201
F A ++ V+N L +AG DQ+ + V
Sbjct: 138 GFAKGIQPQGSALGTTAPVPPQTGSQDEGAAVAGGGSGQYAHVINQLRLAGSDQINISVR 197
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
I E++R +Q+G + S G G +F S G D ++
Sbjct: 198 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 253
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
AL + + LAEP LTA SG++A+F SGG+ + + G + +G+ L TPT
Sbjct: 254 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 312
Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
+L RI L + EVS E + + +P R+ TT+EL G + LAGL++
Sbjct: 313 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 372
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436
Q E +P L +IP L F ++ F +E+E+ I AT LV+P LS P DHY
Sbjct: 373 RNQSSEALPFLGEIPGLAPFFGSNGFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 432
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
+ FF + G E + G G+ Y
Sbjct: 433 PSRFERLFFTDM----GSTERPGAQATRLFGNYGYSY 465
>gi|227114876|ref|ZP_03828532.1| hypothetical protein PcarbP_18025 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 479
Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats.
Identities = 120/456 (26%), Positives = 217/456 (47%), Gaps = 28/456 (6%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+ T +++ LF++ V + A + ++ + +++ +LQ+
Sbjct: 12 FRGTCKRLLAAGLFNAVLPVTLTTMMLPA--TTLAAGVSVAPVTDEVHLTVHQGRLLQLN 69
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
VLV+DP A + SP ++++ K+VG + + +G + + ++ E D+ L
Sbjct: 70 ELPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKAL 129
Query: 124 EMTLRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQS----------- 171
++R ++I++E + V++ G V T QD++R ++ +T++ S
Sbjct: 130 GERMKREFPGADIQLEPSIPSGVIVRGSVDTPQDAKRVIDSIQTYIKSSVGGGQGGGGGG 189
Query: 172 -GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
R ++ +S V+N L I Q+ ++V + EV R + ++GF + + S+ + +
Sbjct: 190 GERLPGSSETSGNVVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTA 249
Query: 231 AADFGGKFVSEGGDFSVKGV------LDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ + R +L A+ + LAEP LTA+SG++
Sbjct: 250 GSGSRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGET 309
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
A+F +GG+ + + + S+ YGV+L TPT+LS RI L I EVSE +
Sbjct: 310 AAFAAGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGS 367
Query: 345 -----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS +P+ G LF
Sbjct: 368 VQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFE 427
Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
+ ++EETE+ I AT ++V+PV DL P
Sbjct: 428 SEATSQEETELVIIATAYVVEPVNAGDLQTPGQGVK 463
>gi|89899603|ref|YP_522074.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
gi|89344340|gb|ABD68543.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
Length = 571
Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats.
Identities = 127/543 (23%), Positives = 213/543 (39%), Gaps = 97/543 (17%)
Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISD---VEIGKGKKISIGLNKVIILQVPVDVQDV 69
+ + + AKLP A A + + + I + K +L+ V +
Sbjct: 25 GATVQAGKATAAKLPAPATAPARQALSTTGLCSRVNIAPAVLIPVGKSTVLRPSSPVTRI 84
Query: 70 LVSDPTKA-------------------------------DVVVHSPRTMYLFGKNVGQAN 98
L+ +P A DV++ +P +YL GK +G N
Sbjct: 85 LLGNPENARAARPADTPEGKKEEGVKTPSVNTRPGVADVDVLLLAPTEVYLLGKTIGTTN 144
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDS 157
V+++ DG D+++ D L+ + + + + I+V D++VL GMV +
Sbjct: 145 VVMLDRDGTC-TAFDVVVAMDTMALQAVIGQLLPIEKEIKVTSAFDSIVLSGMVSDTEAL 203
Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
R +L+ ++ +N +V+N+L + QV L+V +AE+ + +L Q G
Sbjct: 204 TRVTDLANAYVRGQDGGGQSNQ---RVVNMLEVGAPQQVMLEVKVAEISKSLLDQFGINF 260
Query: 218 S------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---------- 255
S G + G S SV V+
Sbjct: 261 SRAYVPGDGSMMRFLSGIFGGAVGAMGQISGTGASGVPFSSVDAVIGGTVPIAGASGGNV 320
Query: 256 -------------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
L+ + ++ LAEPT+ AISGQ+ SF +G
Sbjct: 321 TVTYDATTGRPTYTTSYGTVPGRGVSNATLNMQKNDGLVKVLAEPTIMAISGQTGSFLAG 380
Query: 291 GQHLYKTVS---SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PV 340
G+ S T++ ++GV + FTPTVL GRI LR++ EVSE
Sbjct: 381 GKIFIPVSKDNGSGGSTTTLEEKEFGVSVRFTPTVLGSGRINLRVRPEVSELNVAGVQIS 440
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
G +PS+ RKA+TTV+L G + + GL+K++ P L ++P++GALFR+
Sbjct: 441 SGGLNAVLPSFTSRKAETTVQLMDGQSFAIGGLIKNNTTTNINAFPFLGELPVVGALFRS 500
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
+ F + +E+ TP LVKP+ P D Y ++ ++ AS
Sbjct: 501 TEFQTDRSELVFVITPRLVKPL-PVGYRLPTDGYVPPSRSELILGGKLEGQRTDDAASGD 559
Query: 461 EGQ 463
Sbjct: 560 NPA 562
>gi|328952514|ref|YP_004369848.1| type II and III secretion system protein [Desulfobacca acetoxidans
DSM 11109]
gi|328452838|gb|AEB08667.1| type II and III secretion system protein [Desulfobacca acetoxidans
DSM 11109]
Length = 536
Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats.
Identities = 114/504 (22%), Positives = 195/504 (38%), Gaps = 61/504 (12%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
+SI L + + + + + I + + +
Sbjct: 53 YLSRWLSIVLLFFLLTSGRAVLAENESDFASKAGRIVIAPHM--------SFVKRTQRPI 104
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGK-NVGQANVILIGHDG-KQMLNLDILIERDI-AHL 123
V++++P+ AD + +P +++ GK G ++ L D + + + + + +
Sbjct: 105 TRVVLANPSLADAELLTPTQLFIVGKVKQGVTSLTLWHGDNYAETYEIVVSFDDKVWNDV 164
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ +RR + + ++VE + + V+L G V + D + ++++ F +
Sbjct: 165 QAAIRRLVPRARVKVERLPEGVMLDGAVESQGDLDKVDKIAKFFFGECT----------- 213
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------------- 217
N++ + G QV L+V +AEV R +KQ+G
Sbjct: 214 --NMITVMGSQQVQLEVKVAEVSRSGIKQLGLGFLLDKDYKVAVFPSGTAAGAMAGDRTT 271
Query: 218 --SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
SS S A F ++ L+ R LA P
Sbjct: 272 VSQWPTGSSDTKTSSLASVAALASPYSSAFQALVHGLNDDILGIVSLLQGQGLTRLLASP 331
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
TL +SGQ A F GG+ Y+TV STG +GV+L FTP VL I + + E
Sbjct: 332 TLVTMSGQEAHFLVGGEIPYQTV-GSTGTPGTDFKKFGVMLKFTPYVLGDETITISVDPE 390
Query: 336 VSEPV-----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
VS P + +P R +T++L G +AGLL+DD + + IP L
Sbjct: 391 VSAPDYTLGTTTSSGTTVPGLITRTGHSTLQLKDGQVFAMAGLLRDDFRSTVKKIPFLGN 450
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHY-SVEDDAKAFFFNRV 448
+PILG LF + F R ETE+ I P +V+ + +++ P + D F NR
Sbjct: 451 LPILGTLFTSKEFQRSETELMIIVKPKIVRALNPQEVPALPGSNMERDVSDLDFFILNRG 510
Query: 449 NKIYGPKEASEVE-GQNYKGAIGF 471
G A ++ G IGF
Sbjct: 511 WPKTGASSAPPPAKAPSFVGEIGF 534
>gi|220922532|ref|YP_002497834.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
gi|219947139|gb|ACL57531.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
Length = 479
Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats.
Identities = 121/481 (25%), Positives = 192/481 (39%), Gaps = 57/481 (11%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ E ++ + +NK ++V D+L+ A+V+ S +T+Y+ GK VG N
Sbjct: 6 PAAGETITVTRVRVPVNKSQTMRVVAPFSDILIGASKIAEVIPLSDQTLYILGKEVGTTN 65
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
V L+ + K + +D+ + D ++ + +R D VL G
Sbjct: 66 VSLVDANKKVIGVVDVEVGLDAGNIGAKVLGGSGARGVRFTTEGDKAVLTGTAEDAV--- 122
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ +N + VMN+ + QV LKV E+ R + +G +
Sbjct: 123 ---------AADRAVALASNLAPGGVMNMTTVRSTQQVMLKVRFIEIDRTAGRDLGVRWE 173
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-------------------------- 252
T S A + G + + +
Sbjct: 174 GTNRSVAGRSGTVAATPEALTTAPGGNGIGLLSNAIPAVAGAALSTVAAPQFGQFAARLI 233
Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GAT 305
+ + ALE R LAEP L A SGQ A F +GG++ T SSS
Sbjct: 234 NSNSAKVDLFISALETQGLARRLAEPNLVASSGQPAEFLAGGEYPIPTASSSGALGVPTI 293
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVE 361
+VT ++GV L FTPTVLS G I L+++ EVSE ++ +P R+A T +E
Sbjct: 294 TVTFKEFGVRLTFTPTVLSNGLINLQLEPEVSEIDPAISVNTGLVTVPGLSKRRARTNIE 353
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G + +AGLL+ ++ E +P L IP+LGALF + F + +TE+ + TP LVKP
Sbjct: 354 MRDGQSFAIAGLLQAVNEKNLEQLPWLGSIPVLGALFSSKEFRQRDTELVVIVTPHLVKP 413
Query: 422 VAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY-------KGAIGFIY 473
L+ P D +DA F + Q G+ G +
Sbjct: 414 SKPGQPLATPLDTRMPTNDADYFLGGQTELPKSKNPGKPSRLQELISAEGAAIGSYGHVV 473
Query: 474 K 474
K
Sbjct: 474 K 474
>gi|87199101|ref|YP_496358.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
gi|87134782|gb|ABD25524.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 539
Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats.
Identities = 121/472 (25%), Positives = 208/472 (44%), Gaps = 56/472 (11%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
+ + ++I + + ++ VP + DV V+D ADV V S +Y+FGK G
Sbjct: 40 APLHAQGMTSPARTVTISIGRGELVTVPGRMADVFVADERVADVQVKSTNQLYVFGKAGG 99
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
+ + G + + ++ + ++ ++ L + ++ I V +++TV+L G V +
Sbjct: 100 ETTIYASNAKGDVVWSANVRVGNNLDSIDQMLHLAMPEARINVATMNNTVLLTGTVAAPE 159
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
D+ A L + F+ + V++ L +A QV+L V AEV R +++ +G
Sbjct: 160 DAAEAERLVKAFVGEKT----------NVISRLKMATPLQVSLHVKFAEVSRSLVRTLGV 209
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---------FETVLHA---- 262
+ + G V+ + S + A
Sbjct: 210 NLTTIDGTGGIKFGIGQGSTTGSVATNRNLPFGVGTSSTSGYILDPTGATSNYVSATGTS 269
Query: 263 ---------------------------LERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
E + TL+EP LTAISG++A F +GG++
Sbjct: 270 VAASSSGTTIAGMGKLLGLDLLAALDAGETIGLVTTLSEPNLTAISGETAEFLAGGEYPI 329
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSY 351
VS G TS+ YGV L +TPTVL+ GRI +R++ E SE ++ ++P+
Sbjct: 330 P-VSQGLGTTSIEYKKYGVSLAYTPTVLANGRISIRVRPEASELSSTGALKLDSVEIPAL 388
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
VR+A+TTVEL SG + ++AGLL++ Q +P IPILG+LFR++ + + ETE+
Sbjct: 389 TVRRAETTVELGSGQSFMIAGLLQNGAQNALTKMPGAGDIPILGSLFRSTSYKKGETELV 448
Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
I TP+LV PV D+ P D + ++ + + Q
Sbjct: 449 IVVTPYLVNPVNANDIKLPTDGFQSPNEIQR-LLGHMESDGVTGGDRPKPTQ 499
>gi|197337022|ref|YP_002157812.1| general secretion pathway protein D [Vibrio fischeri MJ11]
gi|197314274|gb|ACH63723.1| general secretion pathway protein D [Vibrio fischeri MJ11]
Length = 440
Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats.
Identities = 110/401 (27%), Positives = 181/401 (45%), Gaps = 38/401 (9%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
I++ ++ DV V VSDP AD V + + ++GK +GQ++V++ +G +
Sbjct: 27 INMSEGDSQVILANKDVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRNGHTL 86
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
N +++ + + ++ + D ++ V + + VVL G V T Q+ + L
Sbjct: 87 ANKKVIVNKSLDSIKQYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVGQLLD 146
Query: 170 QSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+ + ++N + +A QV +K++IAEV + L+ IG
Sbjct: 147 KDDEKFTFEQDMEDQDYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFLQDIG 206
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
Q+ + G +V+ A+ T + LAE
Sbjct: 207 IQYG-------------------TDAAGVFIQPLTHFSSSDIMSVITAIGSDTVGQILAE 247
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P L+ +SG+SASF GG+ T +T+V +YGV L V +I L +
Sbjct: 248 PNLSVVSGESASFLVGGELPVVTTV--NNSTNVMYKEYGVRLELMAKVKKDDKITLSLVP 305
Query: 335 EVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
EVS I ++ D+P+ + R+A TTVEL G + VL GLL + ++ + IP + IP
Sbjct: 306 EVSSLDIQYENDSYDLPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFIGDIP 365
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
ILGALFR S R +TE+ I AT LVKP+ + P
Sbjct: 366 ILGALFRGSSTKRNKTELLIVATVNLVKPIHSSQIQLPMMR 406
>gi|59713403|ref|YP_206178.1| general secretion pathway protein D [Vibrio fischeri ES114]
gi|59481651|gb|AAW87290.1| general secretion pathway protein D [Vibrio fischeri ES114]
Length = 440
Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats.
Identities = 110/401 (27%), Positives = 181/401 (45%), Gaps = 38/401 (9%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
I++ ++ DV V VSDP AD V + + ++GK +GQ++V++ +G +
Sbjct: 27 INMSEGDSQVILANKDVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRNGHTL 86
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
N +++ + + ++ + D ++ V + + VVL G V T Q+ + L
Sbjct: 87 ANKKLIVNKSLDSIKQYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVGQLLD 146
Query: 170 QSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+ + ++N + +A QV +K++IAEV + L+ IG
Sbjct: 147 KDDEKFTFEQDMEDQDYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFLQDIG 206
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
Q+ + G +V+ A+ T + LAE
Sbjct: 207 IQYG-------------------TDAAGVFIQPLTHFSSSDIMSVITAIGSDTVGQILAE 247
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P L+ +SG+SASF GG+ T +T+V +YGV L V +I L +
Sbjct: 248 PNLSVVSGESASFLVGGELPVVTTV--NNSTNVMYKEYGVRLELMAKVKKDDKITLSLVP 305
Query: 335 EVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
EVS I ++ D+P+ + R+A TTVEL G + VL GLL + ++ + IP + IP
Sbjct: 306 EVSSLDIQYENDSYDLPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFIGDIP 365
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
ILGALFR S R +TE+ I AT LVKP+ + P
Sbjct: 366 ILGALFRGSSTKRNKTELLIVATVNLVKPIHSSQIQLPMMR 406
>gi|260775653|ref|ZP_05884549.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260608069|gb|EEX34238.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 442
Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats.
Identities = 109/414 (26%), Positives = 178/414 (42%), Gaps = 34/414 (8%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
+ + + + + + ++ V VS+P AD V + ++ K+
Sbjct: 12 SPLLSVATTVAASEYLPMAEGDARPFATQQEIGTVFVSNPAVADYQVIDKHKVVIYSKST 71
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
G++++I+ G +L+ I + + ++ LR ++ + V + VVL G V +
Sbjct: 72 GKSSLIVFDQSGNTILSRRIQVNKSADSIQRYLRNHYPNAQVNAYYVGEQVVLSGTVSSE 131
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLK 199
Q + L + Q ++ V+N + + QV +K
Sbjct: 132 QVKDEIYIVVGEMLEKPANRQKFELETEDESYEMKFMERREYDGVVNNIEVVVTKQVNVK 191
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
V+IAEV + L+QIG + G G A +
Sbjct: 192 VSIAEVSQKALEQIGVSYFSKGQVPGSGVFVNA---------------INAFSADDILMM 236
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
++A++ + R LAEP L+ SG+SASF GG+ T G +SV+ ++GV L
Sbjct: 237 INAIDNESVGRVLAEPNLSVTSGESASFLVGGELPVVTTI--DGGSSVSYKEFGVRLELM 294
Query: 320 PTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
V +I L + EVS + D+P+ + R+A TTVEL G + VL GLL +
Sbjct: 295 AKVKRDNKITLSLVPEVSSLDSQYENDTYDLPALKTRRARTTVELGDGQSFVLGGLLSSE 354
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
+ IPL+ IPILG LFRN+ R +TE+ I AT LVKPV +S P
Sbjct: 355 DMESLSKIPLIGDIPILGTLFRNAETERNKTELIIVATVNLVKPVETSTISLPT 408
>gi|283787693|ref|YP_003367558.1| tight adherence secretin RcpA [Citrobacter rodentium ICC168]
gi|282951147|emb|CBG90838.1| putative tight adherence secretin RcpA [Citrobacter rodentium
ICC168]
Length = 482
Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats.
Identities = 124/496 (25%), Positives = 215/496 (43%), Gaps = 55/496 (11%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
R TM+S L ++ LP A + + +
Sbjct: 8 SRHVLTMLSHLLLTAVLLSFSLPAAAGA-----------------LYMKHGQSRNFHFTG 50
Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
D+ + +SDP AD V + + + ++ KN G ++I+ G + +L I ++ ++ +
Sbjct: 51 DLDTIFISDPRVADYKVVNNKNIIVYAKNTGTTDLIVYGRNNTVLLKHSISVDPFLSDIN 110
Query: 125 MTLRRFIADSNIRVE------MVSDTVV--LHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
+ R ++I V +D VV ++G V + +L + ++ SG +
Sbjct: 111 QRVARLFPGNSIEVTRFMGGATAADKVVYIINGSVTDEESMDAIYQLVGSIVNSSGGEEK 170
Query: 177 ANSSSKK-------------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
N S+ K V+N + + +QV + +T+ EV + +G
Sbjct: 171 DNKSANKRVVDSKINTDLIEKKKYANVINKMQLVASNQVNVHLTVVEVSKTFTDALGIDW 230
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
S SS + + + G F KG D + TV++A++ + R +A+P L
Sbjct: 231 SSLTLSSIVNGGASINNPGTF----NLLGFKGGFDAKNISTVINAIQNDSVARIMAQPNL 286
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
T +SG++A F GG+ + +S T+VT +YG+ L V +I L + E+S
Sbjct: 287 TVLSGETADFLVGGEIPILSKNSDNEGTTVTYKEYGIKLSIAAKVEKKSKIKLSLSNEIS 346
Query: 338 EPVI--GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
NA +P+ R++ +T+EL G + + GLL + + +P + IPILG
Sbjct: 347 SISGAYSFNAYSIPTLTTRRSSSTIELADGDSFAIGGLLTEKDYETLGKVPFIGDIPILG 406
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
AL RNS RE+TE+ I AT LVKPVA D+ P Y+ + K FF V+K G
Sbjct: 407 ALARNSNTQREKTELVIFATVNLVKPVASNRDIVLP--EYNKTSNNKLFFNVGVDK--GT 462
Query: 455 KEASEVEGQNYKGAIG 470
+E + + + G
Sbjct: 463 RENRLSKDTDKFLSYG 478
>gi|258620803|ref|ZP_05715838.1| Flp pilus assembly protein [Vibrio mimicus VM573]
gi|258587001|gb|EEW11715.1| Flp pilus assembly protein [Vibrio mimicus VM573]
Length = 444
Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats.
Identities = 106/442 (23%), Positives = 183/442 (41%), Gaps = 42/442 (9%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
+ +++ + + + V V+D T AD + + ++G G +VI+ G
Sbjct: 23 AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGG 82
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
++ N ++++ + + L+ TL D +I V V D VVL G V + + + L
Sbjct: 83 NEIYNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGE 142
Query: 167 FLSQ------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
L + A V+N L + +Q+ +K+TIAEV
Sbjct: 143 MLKKNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSS 202
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L ++G + G G ++ ++ A
Sbjct: 203 FLSELGVSYGDIGGGD----------------VGKFYNKLLDFTAQDIVAIIAASGNDDI 246
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+ LAEP L+ ISG++ASF GG+ T ++ +YG+ L V I
Sbjct: 247 GQVLAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENI 304
Query: 329 GLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
L + EVS ++ + PS + RKA TTV+L G + VLAGLL + ++
Sbjct: 305 RLSLLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRK 364
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
IP+L IPILGALF +++ +R++TE+ I AT LV PV + P + D +
Sbjct: 365 IPILGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLL 422
Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
++ + P+ + +
Sbjct: 423 RIDLSGVDEPELQRTINAGGFN 444
>gi|86159249|ref|YP_466034.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85775760|gb|ABC82597.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 487
Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats.
Identities = 125/484 (25%), Positives = 207/484 (42%), Gaps = 54/484 (11%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
M + + VA + + I D E+G + +S+ + +L V + +
Sbjct: 1 MSRHAVVVALMLVAGRAAAAQDVVPTMRI-DREVGAARSMSLEAGQNRLLVVSDQIGRIA 59
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
V++P AD+ V +P + L K +G ++ L D + + + + R++ L L+
Sbjct: 60 VANPDVADLKVVTPYQVLLTAKGIGSTDLTLWDRDNHPL-VIALQVTRNLEGLRKQLKEL 118
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
A I V D VV+ G V ++ +R E++ + KV NL+ +
Sbjct: 119 FAGEKIEVSSAGDLVVISGQVSDVRIPERVAEVAR-------------LHATKVANLVQV 165
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFAADFGGKFVS 240
+G+ QV L+V AEV R L+++G + F +
Sbjct: 166 SGQQQVQLEVRFAEVGRTGLREMGVNFFHKSDDGKRVGGMTGNRTYPGDFLNTQSNPAIP 225
Query: 241 EGGDFS---------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
G +F F +L+ LE++ +TLAEPTL A
Sbjct: 226 GTGPRGLWGPGMPPDVPNPAFNNAFSFFLSQGGQFPFSVMLNLLEQSNLAKTLAEPTLVA 285
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
+SGQ A+F +GG+ S+ G T+V +G+ L FTPTV+ I LR++ EVS+
Sbjct: 286 MSGQEAAFLAGGELPIPLA-STFGQTAVEWKKFGIQLRFTPTVIGD-AIHLRLKAEVSDL 343
Query: 340 VIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+P R+++TT+ L G + +AGL+ D ++ +P+L IPILG
Sbjct: 344 DPTTAVTVGGTTIPGLVSRQSETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILG 403
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFNRVNKIYG 453
ALFR+ + R+ETE+ + T L KPVA +L P D + DA F
Sbjct: 404 ALFRSQAYQRDETELLVVVTARLAKPVAPHELPPLPTDFENNDPSDAALFLLGSDGSAVK 463
Query: 454 PKEA 457
+
Sbjct: 464 QPKP 467
>gi|262164949|ref|ZP_06032687.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus VM223]
gi|262027329|gb|EEY45996.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus VM223]
Length = 444
Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats.
Identities = 106/442 (23%), Positives = 182/442 (41%), Gaps = 42/442 (9%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
+ +++ + + + V V+D T AD + + ++G G +VI+ G
Sbjct: 23 AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGG 82
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
++ N ++++ + + L+ TL D +I V V D VVL G V + + + L
Sbjct: 83 NEIYNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGE 142
Query: 167 FLSQ------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
L + A V+N L + +Q+ +K+TIAEV
Sbjct: 143 MLKKNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSS 202
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L ++G + G G ++ ++ A
Sbjct: 203 FLSELGVSYGDIGGGD----------------VGKFYNKLLDFTAQDIVAIIAASGNDDI 246
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+ LAEP L+ ISG++ASF GG+ T ++ +YG+ L V I
Sbjct: 247 GQVLAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENI 304
Query: 329 GLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
L + EVS ++ + PS + RKA TTV+L G + VLAGLL + ++
Sbjct: 305 RLSLLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRK 364
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
IP+L IPILGALF +++ +R++TE+ I AT LV PV + P + D +
Sbjct: 365 IPILGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLL 422
Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
+ + P+ + +
Sbjct: 423 RIDLTGVDEPELQRTINAGGFN 444
>gi|325108834|ref|YP_004269902.1| type II and III secretion system protein [Planctomyces brasiliensis
DSM 5305]
gi|324969102|gb|ADY59880.1| type II and III secretion system protein [Planctomyces brasiliensis
DSM 5305]
Length = 736
Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats.
Identities = 99/488 (20%), Positives = 187/488 (38%), Gaps = 49/488 (10%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
+ + + +K+ + LN+ +++ V + ++DPT D+
Sbjct: 43 APTRSAQSSRIQQRLDARIVSMPQVERKLELVLNRSQLVKTRSRVTRMAIADPTVIDIAP 102
Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA----------HLEMTLRRFI 131
+ G +G + L + L ++ + D LE +
Sbjct: 103 FEEDEFAIIGTAIGSTTLTLWFENDDNPLIYEVTVIDDPNVEEQLRIDYGKLERKIAILF 162
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS----------- 180
+S + + + + +V+ G + ++ R +++ Y +
Sbjct: 163 PNSKVYLIPLHEKLVVKGQAKDAAEAARILQIVRGEFLDDYGGLYGPNGGAGRGGGGGGG 222
Query: 181 -------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
S ++N+L + GE QV L VTIAE+ R L+++G ++ ++
Sbjct: 223 YDDDGIRDEDDLYSSFIVNMLQVPGEYQVMLHVTIAELNRSQLRRMGVDFAVLFANGQHF 282
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
GG ++ G+ + +++AL + L+ P+LT +SG A F
Sbjct: 283 IGSTIS--------GGVPTLTGIFNNGDISVLINALASNGTAKILSRPSLTTLSGHPAQF 334
Query: 288 TSGGQH--LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
+GG+ TS +G + PTV+ LRI E S+ +
Sbjct: 335 LAGGEFAVPTTVGVGGVQGTSTQFRGFGTSMVVVPTVVDGDLFRLRIAPEFSQINQNNSV 394
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL-FRNSRFN 404
G +P R+ TTVEL G TIVL GLL IPLL +IP++G L F R
Sbjct: 395 GGIPGLDSRRVQTTVELREGQTIVLGGLLSRQTASEVTRIPLLGEIPLIGPLMFNTKRAT 454
Query: 405 REETEIFIAATPFLVKPVAMRDL-SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
+E E+ + TP +V+ + ++ P + + +D + + R G + +
Sbjct: 455 EDELELLVLVTPEIVRAMDPDEVPPMPGYYVTHPNDRELY---RYAMTEGAPDLEVYQLA 511
Query: 464 NYKGAIGF 471
Y +G+
Sbjct: 512 PYGNKVGY 519
>gi|283779855|ref|YP_003370610.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
gi|283438308|gb|ADB16750.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
Length = 585
Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats.
Identities = 108/476 (22%), Positives = 199/476 (41%), Gaps = 24/476 (5%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
RY + + L + P+ ++ + + G +K+ + +N +++
Sbjct: 13 RYSLLAGLPALLVALTFAAPAFSQPMSLPGVGPMPAAVKFKVQGPAEKLEMTVNTSRVVE 72
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
P DV +LV++P + SP ++ L G + + D + + LD+++ D+
Sbjct: 73 FPFDVPKMLVNNPDLVRITPISPNSIQLSAVKGGVTQLNVWNADDQ-VTTLDLIVIPDVQ 131
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
LEM L+ D+ IR+ ++ ++ + G V + ++E +
Sbjct: 132 ELEMILKHEFPDAAIRLRPLASSLYISGFVPKAEMVASITRVAEDYFP------------ 179
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKF 238
K++N + + G +V L V + EV R L+ +GF + ++S + G
Sbjct: 180 -KIINNMTVGGVQKVLLHVKVMEVSRTKLRTMGFDWAQLNGDDFVTQSVSGLLQTPGTLT 238
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ G + D F L AL + + LAEPTL +SG+ A F GG+
Sbjct: 239 GNTGATVRFGILTDNNQFYGFLEALRQNDLAKLLAEPTLVTMSGRPAYFNVGGEVPIPM- 297
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKA 356
S G T+V +G + F P VL G I L ++ EV+E +P +R R A
Sbjct: 298 QQSLGVTTVQYKQFGTRIDFVPIVLGNGSIRLEVRPEVTEIDPSLRDAVTGVPGFRQRGA 357
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
DT VE+ +G T+ +AGL+ + ++ G+P L+ +P G FR E E+ I TP
Sbjct: 358 DTAVEIKAGQTMAIAGLVYNRVEASNRGVPFLADLPWAGGAFRRVSEKVNEVELVIMVTP 417
Query: 417 FLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN--KIYGPKEASEVEGQNYKGA 468
+ + ++ P + D + + + K +G ++G
Sbjct: 418 EFTEALDPSEVPACGPGQLTTSPTDKELYGRGYIEVPKANCNNGNCAPQGSMFQGT 473
>gi|170022934|ref|YP_001719439.1| type II and III secretion system protein [Yersinia
pseudotuberculosis YPIII]
gi|169749468|gb|ACA66986.1| type II and III secretion system protein [Yersinia
pseudotuberculosis YPIII]
Length = 423
Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats.
Identities = 104/440 (23%), Positives = 191/440 (43%), Gaps = 35/440 (7%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
K+I + + I+++ ++ V VS AD + ++ ++ K G A
Sbjct: 10 FENSANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 69
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
L + + + +L+ I +R DS I + + ++ +L G T +
Sbjct: 70 LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 129
Query: 161 VELSETFLSQSGRNQ-----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
+ + + ++ + V+N + + +QV +K+TI E+ +D + IG
Sbjct: 130 ANIVGEATASKKEKEREEHYQSSPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGL 189
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ S++G + + S T++HA+ + LAEP
Sbjct: 190 DWNSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEP 230
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
L+ +SG+ ASF GG+ + + + SV ++G+ L+ V RI + + E
Sbjct: 231 NLSVLSGEYASFLVGGEIPIVSTNQNG--ISVEYKEFGIKLNIGAKVNEKKRIRVMLGEE 288
Query: 336 VSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
VS N PS R+RKA+TTVEL G + +L GL+ ++ + IP + +P
Sbjct: 289 VSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVP 348
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
+LGALFRN++ R ++E+ + AT LVKPV+ R + PD + + FF N
Sbjct: 349 LLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTIERFF----NLTN 402
Query: 453 GPKEASEVEGQNYKGAIGFI 472
+ +++ GFI
Sbjct: 403 IKDAKRRKQAKDFLQKGGFI 422
>gi|261251281|ref|ZP_05943855.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
gi|260938154|gb|EEX94142.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
Length = 441
Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats.
Identities = 107/442 (24%), Positives = 185/442 (41%), Gaps = 43/442 (9%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ +S+ + + + V V++ AD + + ++G G +VI+
Sbjct: 22 ASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKIIDDNKVVVYGVGQGSTSVIVYDRG 81
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G ++ N ++++ + + L+ T+ D N+ V V D VVL G+V + + Q+ L
Sbjct: 82 GNEIYNAELVVNQSLRLLKQTIIARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVG 141
Query: 166 TFLSQ-----------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
L + + + + +V+N L + +Q+ +K+T+AEV
Sbjct: 142 EMLKKERRRHTYELRDADGEEYDELDYTSRFTYDQVINHLKVLTTEQINVKLTVAEVSSS 201
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L ++G +S +G G + +V+ A
Sbjct: 202 FLSELGVSYSDSGE------------------PGKFVNKLLDFTAQDIVSVISASGDDKI 243
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+ LAEP L+ ISG+ ASF +GG+ S++ +YGV L V I
Sbjct: 244 GQVLAEPNLSVISGEQASFLAGGEIPIAVRDEDG--ISISYKEYGVKLAMVAKVTDSENI 301
Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
L + EVS +P+ R R+A TTV L G + VLAGLL + ++
Sbjct: 302 RLTLIPEVSSIDESNKTSTGLISVPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTK 361
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
IP L IPILGALF ++ NR +TE+ I AT LV PV + P + D +
Sbjct: 362 IPFLGDIPILGALFSHTTTNRSKTELIIVATVNLVDPVESEQVKLP--SFKRTSDIERLL 419
Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
++++ P+ +E +
Sbjct: 420 RIDLSELNEPELEGTIEQGGFN 441
>gi|332162954|ref|YP_004299531.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325667184|gb|ADZ43828.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
Length = 410
Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats.
Identities = 106/403 (26%), Positives = 188/403 (46%), Gaps = 33/403 (8%)
Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
+++ ++ V VS AD + ++ ++ K G A IL + + IL++
Sbjct: 1 MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
I +R +S+I + + D+ +L G V T + + + + +
Sbjct: 61 TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120
Query: 179 SSSK-------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
+V+N + + G +QV +K+TIAEV +D + IG S G+ SG
Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ F + KF ++G ++HA+ + R LAEP L+ +SG+SA
Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDDSIARVLAEPNLSVLSGESA 227
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IG 342
SF GG+ V+++ +T +T +G+ L+ V + RI +++ EVS
Sbjct: 228 SFLVGGELPL--VNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
PS+R RKA TT+EL G + +L GL+ ++ + IP + IPILGA FRN+
Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAE 345
Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
+ +TE+ + AT LV+PV+ +++ P ++ + FF
Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFFN 386
>gi|51597670|ref|YP_071861.1| outer membrane secretin family protein [Yersinia pseudotuberculosis
IP 32953]
gi|186896808|ref|YP_001873920.1| type II and III secretion system protein [Yersinia
pseudotuberculosis PB1/+]
gi|51590952|emb|CAH22610.1| putative outer membrane secretin family protein [Yersinia
pseudotuberculosis IP 32953]
gi|186699834|gb|ACC90463.1| type II and III secretion system protein [Yersinia
pseudotuberculosis PB1/+]
Length = 439
Score = 266 bits (679), Expect = 8e-69, Method: Composition-based stats.
Identities = 105/440 (23%), Positives = 190/440 (43%), Gaps = 35/440 (7%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
K+I + + I+++ ++ V VS AD + ++ ++ K G A
Sbjct: 26 FENSANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 85
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
L + + + +L+ I +R DS I + + ++ +L G T +
Sbjct: 86 LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 145
Query: 161 VELSETFLSQSGRNQ-----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
+ + + +N + V+N + + +QV +K+TI E+ +D + IG
Sbjct: 146 ASIVGEATASKKEKEREESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGL 205
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ S++G + + S T++HA+ + LAEP
Sbjct: 206 DWNSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEP 246
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
L+ +SG+ ASF GG+ + + + SV ++G+ L+ V RI + + E
Sbjct: 247 NLSVLSGEYASFLVGGEIPIVSTNQNG--ISVEYKEFGIKLNIGAKVNEKKRIRVMLGEE 304
Query: 336 VSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
VS N PS R+RKA+TTVEL G + +L GL+ ++ + IP + +P
Sbjct: 305 VSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVP 364
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
+LGALFRN++ R ++E+ + AT LVKPV+ R + PD + + FF N
Sbjct: 365 LLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFF----NLTN 418
Query: 453 GPKEASEVEGQNYKGAIGFI 472
+ + + GFI
Sbjct: 419 IKDAKRRKQAKEFLQKGGFI 438
>gi|86144318|ref|ZP_01062650.1| Flp pilus assembly protein [Vibrio sp. MED222]
gi|85837217|gb|EAQ55329.1| Flp pilus assembly protein [Vibrio sp. MED222]
Length = 441
Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats.
Identities = 110/442 (24%), Positives = 186/442 (42%), Gaps = 43/442 (9%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ +++ + + + V V++ AD + + ++G G +VI+
Sbjct: 22 ASELMNLDQGAAKTINLKRQISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRG 81
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G ++ N ++++ + + L+ TL D N+ V V D VVL G+V + + Q+ L
Sbjct: 82 GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVG 141
Query: 166 TFLSQSGRNQY-----------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
L + R A + +V+N L + +Q+ +K+T+AEV
Sbjct: 142 EMLKKDRRRAAYELKDADGEALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSS 201
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L ++G +S +G G + +V+ A
Sbjct: 202 FLTELGVTYSDSGD------------------PGTFVNKLLDFTAQDIVSVISASGDDKI 243
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
R LAEP L+ ISG+ ASF +GG+ +++ +YGV L V I
Sbjct: 244 GRVLAEPNLSVISGEQASFLAGGEIPIAIRDEDG--ITISYKEYGVKLAMVAKVTDTENI 301
Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
L + EVS +PS R R+A TTV L G + VLAGLL + ++
Sbjct: 302 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 361
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
IP+L IPILGALF +S NR +TE+ I AT LV PV + P + D +
Sbjct: 362 IPILGDIPILGALFSHSSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 419
Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
++++ P+ + + +
Sbjct: 420 RIDLSELDEPELENTINQGGFN 441
>gi|197123317|ref|YP_002135268.1| type II and III secretion system protein [Anaeromyxobacter sp. K]
gi|196173166|gb|ACG74139.1| type II and III secretion system protein [Anaeromyxobacter sp. K]
Length = 484
Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats.
Identities = 123/465 (26%), Positives = 202/465 (43%), Gaps = 54/465 (11%)
Query: 20 NPSVAKLPPIKEANAAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
+ A V + D E+G + +S+ + +L V + + V++P AD
Sbjct: 8 VALMLVGGGAAAAQDVVPTMRIDREVGAARSMSLEAGQNRLLVVSDQIGRIAVANPDVAD 67
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
+ V +P + L K +G ++ L D + + + + R++ L L+ A I V
Sbjct: 68 LKVVTPYQVLLTAKGIGSTDLTLWDRDNHPL-VVALQVTRNLEGLRKQLKELFAGEKIDV 126
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
D VV+ G V ++ +R E++ + KV NL+ ++G+ QV L
Sbjct: 127 SSAGDLVVISGQVSDVRIPERVAEVAR-------------LHASKVANLVQVSGQQQVQL 173
Query: 199 KVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFAADFGGKFVSEGGDFS-- 246
+V AEV R L+++G + F + G
Sbjct: 174 EVRFAEVGRTGLREMGVNFFHKSDDGKRVGGMTGNRTYPGDFLNTQSNPAIPGTGPRGLW 233
Query: 247 -------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
+F F +L+ LE++ +TLAEPTL A+SGQ A+F
Sbjct: 234 GPGLPPDVPNAAFNNAFSFFLSQGGQFPFSVMLNLLEQSNLAKTLAEPTLVAMSGQEAAF 293
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
+GG+ S+ G T+V +G+ L FTPTV+ I LR++ EVS+
Sbjct: 294 LAGGELPIPLA-STFGQTAVEWKKFGIQLRFTPTVIGD-AIHLRLKAEVSDLDPTTAVTV 351
Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+P R+++TT+ L G + +AGL+ D ++ +P+L IPILGALFR+ +
Sbjct: 352 GGTTIPGLVSRQSETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAY 411
Query: 404 NREETEIFIAATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFN 446
R+ETE+ + T L KPVA +L P D + DA F
Sbjct: 412 QRDETELLVVVTARLAKPVAPHELPPLPTDFENNDPSDAALFLLG 456
>gi|153948843|ref|YP_001399594.1| type II/III secretion system protein [Yersinia pseudotuberculosis
IP 31758]
gi|152960338|gb|ABS47799.1| type II/III secretion system protein [Yersinia pseudotuberculosis
IP 31758]
Length = 439
Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats.
Identities = 105/440 (23%), Positives = 189/440 (42%), Gaps = 35/440 (7%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
K+I + + I++ ++ V VS AD + ++ ++ K G A
Sbjct: 26 FENTATAKQIYLPIGGSHIIKTQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 85
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
L + + + +L+ I +R DS I + + ++ +L G T +
Sbjct: 86 LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 145
Query: 161 VELSETFLSQSGRNQ-----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
+ + + +N + V+N + + +QV +K+TI E+ +D + IG
Sbjct: 146 TSIIGEATASKKEKEREESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGL 205
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ S++G + + S T++HA+ + LAEP
Sbjct: 206 DWNSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEP 246
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
L+ +SG+ ASF GG+ + + + SV ++G+ L+ V RI + + E
Sbjct: 247 NLSVLSGEYASFLVGGEIPIVSTNQNG--ISVEYKEFGIKLNIGAKVNEKKRIRVMLGEE 304
Query: 336 VSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
VS N PS R+RKA+TTVEL G + +L GL+ ++ + IP + +P
Sbjct: 305 VSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVP 364
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
+LGALFRN++ R ++E+ + AT LVKPV+ R + PD + + FF N
Sbjct: 365 LLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFF----NLTN 418
Query: 453 GPKEASEVEGQNYKGAIGFI 472
+ + + GFI
Sbjct: 419 IKDAKRRKQAKEFLQKGGFI 438
>gi|148974885|ref|ZP_01811865.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3]
gi|145965394|gb|EDK30643.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3]
Length = 441
Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats.
Identities = 107/442 (24%), Positives = 185/442 (41%), Gaps = 43/442 (9%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ +++ + + + V V++ AD + + ++G G +VI+
Sbjct: 22 ASELMNLDQGAAKTINLKRQISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRG 81
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G ++ N ++++ + + L+ TL D N+ V + D VVL G+V + + Q+ L
Sbjct: 82 GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNIGDQVVLDGIVGSEEIKQKINRLVG 141
Query: 166 TFLSQ-----------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
L++ A + +V+N L + +Q+ +K+T+AEV
Sbjct: 142 EMLNKERRRAAYELKDADGEALDEIEYTAQYNYDQVINNLKVLTTEQINVKLTVAEVSSS 201
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L ++G +S +G G + V+ A
Sbjct: 202 FLTELGVTYSDSGE------------------PGTFVNKLLDFTAQDIVAVISASGDDKI 243
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
R LAEP L+ ISG+ ASF +GG+ +++ +YGV L V I
Sbjct: 244 GRVLAEPNLSVISGEQASFLAGGEIPIAVRDEDG--ITISYKEYGVKLAMVAKVTDTENI 301
Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
L + EVS +PS R R+A TTV L G + VLAGLL + ++
Sbjct: 302 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 361
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
IP+L IPILGALF ++ NR +TE+ I AT LV PV + P + D +
Sbjct: 362 IPILGDIPILGALFSHTSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 419
Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
++++ P+ + + +
Sbjct: 420 RIDLSELDEPELENTINQGGFN 441
>gi|149178342|ref|ZP_01856934.1| probable type II secretion system protein [Planctomyces maris DSM
8797]
gi|148842868|gb|EDL57239.1| probable type II secretion system protein [Planctomyces maris DSM
8797]
Length = 546
Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats.
Identities = 103/440 (23%), Positives = 183/440 (41%), Gaps = 38/440 (8%)
Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI--GHDG 106
++S+ IL++ +DV V ++DP+K +VV + + + GK+ G + L
Sbjct: 67 ELSVQQRHSKILKMKMDVFRVAIADPSKIEVVAFGSQEVEVIGKDTGTTTMTLWLGDEAN 126
Query: 107 KQMLNLDI----------LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
Q+L++ + L + + + F +S I++ +D +++ G R Q+
Sbjct: 127 PQILSVQVKVEGDNSIEDLRRMEYGEFQKMINEFFPNSKIQLVPFADKLIVRGQARDEQE 186
Query: 157 SQRAVELSETF--------------------LSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ + + + + A V+++L + GE Q+
Sbjct: 187 AVQIITIIRARSGSGGGQGGGGGGGSLFADGAAADPFPGGAMLPEATVIDMLKVPGEKQI 246
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
LKV IA++ R + G ++ F + + GG V
Sbjct: 247 MLKVRIAQIDRSAARTASTNIIAQSGDFGWAQLFTGV--AQQLGNGGTGLVTASFTSSDV 304
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGV 314
+ + AL + + LAEP L ISG++A+F SGG+ A + T +G
Sbjct: 305 DVFISALAQNGYAKILAEPNLVTISGRTANFISGGEFAVPTVVGVGGAQAATTTFKGFGT 364
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
L F PTVL RI L++ S + +G + V+ TTV+L G + +AGLL
Sbjct: 365 QLSFLPTVLDKDRIRLQVSPSFSTVNPALTSGGVLGVNVQAVTTTVDLREGQVLAIAGLL 424
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDD 432
++ + +P + IP++G LF N +R+ETE+ I +P LV P+ D P
Sbjct: 425 QEQQRGDLNRVPFIGDIPLVGPLFSNKGVSRDETELIILISPELVHPMEPEDAPTVLPGM 484
Query: 433 HYSVEDDAKAFFFNRVNKIY 452
+ D FF N +
Sbjct: 485 EVTEPGDVDFFFMNNIEGKP 504
>gi|121534343|ref|ZP_01666167.1| type II and III secretion system protein [Thermosinus
carboxydivorans Nor1]
gi|121307113|gb|EAX48031.1| type II and III secretion system protein [Thermosinus
carboxydivorans Nor1]
Length = 408
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 101/379 (26%), Positives = 173/379 (45%), Gaps = 29/379 (7%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+++ +N+ +L VQ V V++P ADV+V S + + GK G + + G+
Sbjct: 29 LTVAVNQSRVLGFSG-VQRVAVANPEIADVLVVSGTEVLVVGKAPGLTTMHVWTEAGR-- 85
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
++ + D A + ++ + IRV V+ TV+L G V T Q RA +L+ +
Sbjct: 86 ATYEVEVGVDDAKVAGEIKSILGYDGIRVSKVNRTVILEGAVDTQQQKARAEKLAAVY-- 143
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
KV++LL + QV ++ + E+ R +K++G + + + G
Sbjct: 144 -----------GDKVVSLLEVLRPVQVKIEAKVIEINRQKIKELGIKWGNSADTPGTFI- 191
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
FG ++ + L AL ++ A + L++P + +SG AS
Sbjct: 192 ----FGQSALNSKVGDVFGDLGGYADINAQLSALVKSGAAKVLSQPNVVTLSGDKASIMI 247
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----- 344
GGQ + T + DYG+ L P V G I R++ EVS
Sbjct: 248 GGQIPVPVAQDNNKIT-IEWKDYGIKLDIAPEVNGDGLIQSRVKAEVSSLDYNSANSIKL 306
Query: 345 --AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
++P R+RKA+T + L SG T+ + GL+ + + +P+L +P+LG LFR++
Sbjct: 307 GAGMEIPPVRLRKAETAIALSSGQTMAIGGLIATETSKDVVKVPMLGDLPVLGHLFRSTS 366
Query: 403 FNREETEIFIAATPFLVKP 421
F R ETE+ + TP LV P
Sbjct: 367 FRRGETELLVLITPSLVNP 385
>gi|238897548|ref|YP_002923227.1| putative tight adherance operon protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465305|gb|ACQ67079.1| putative tight adherance operon protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 459
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 104/462 (22%), Positives = 199/462 (43%), Gaps = 55/462 (11%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ + + ++++ ++ V VS+P AD + T+ ++ K G++
Sbjct: 24 PGSANAANTGDLFMSEGESLVIKKKQNIDTVFVSNPAVADYKIVDHNTVIIYAKAEGKSE 83
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
+ + ++++ I + +R +S +++E + + +L GM T +
Sbjct: 84 FTFFEPNQNISYHATVMVDNIIKVVSDKIRMLYPESQVQIEKIGKSYLLTGMAPTEEVRD 143
Query: 159 RAVELSETFLSQSGRNQY--------------------------ANSSSKKVMNLLNIAG 192
V + + N N ++++N + +
Sbjct: 144 NIVRMVGESIQSPKSNDKDTVSVRLDISDKGDASETTENVNSSLTNKVYERLINQIQLPV 203
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+QV +K++I EV ++ IGF+ + G+ S +F AD
Sbjct: 204 SNQVNVKLSIVEVSKEFKDNIGFEWANLGTFSFHKFNFTAD------------------- 244
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+++AL+ + R LAEP L+ +SG+SASF GG+ Y ++ S+ ++
Sbjct: 245 --RITHLVNALQDDSIARVLAEPNLSVLSGESASFLVGGEIPYVKDRDASNRASIDFKEF 302
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVL 370
G+ L T V R+ + + E+S + A MPS + R+A+TTVEL G + VL
Sbjct: 303 GIKLSVTAKVNENKRVKVMLSEEISSVIGNTKAEEFTMPSLKKRRANTTVELADGESFVL 362
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
GL+ + Q+ + +P + IPILG+ FR+++ N E+ + AT LVKP+ ++++ P
Sbjct: 363 GGLMNQEEQEALQKVPFIGDIPILGSFFRHTKTNNRSIELIVVATVNLVKPIPSKEITLP 422
Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
D + F V K K+ +E + G GFI
Sbjct: 423 D--FMKTSSIARFLNLSVIKNISQKKEAE----AFLGKGGFI 458
>gi|209809170|ref|YP_002264708.1| type II/III secretion system protein [Aliivibrio salmonicida
LFI1238]
gi|208010732|emb|CAQ81123.1| type II/III secretion system protein [Aliivibrio salmonicida
LFI1238]
Length = 445
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 113/398 (28%), Positives = 189/398 (47%), Gaps = 36/398 (9%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
I++ + V D+ V +SDP AD V R + ++GK++G ++V++ G G +
Sbjct: 30 INMSEGGAKTISVEQDISSVFLSDPKIADYQVIDKRKIVIYGKSIGSSSVLIFGEKGNTL 89
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
N I++ + +A ++ + D+ + + V + VVL+G V T Q+ + L
Sbjct: 90 SNKKIMVNKSLATIQQYISVKYPDTAVDIFNVGEQVVLNGTVSTEQEKDEINGIVGELLE 149
Query: 170 QSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+S ++ + V+N + +A QV +K++IAEV + L+QIG
Sbjct: 150 KSRKDFQFEQDMEDQDYEIQFMERHEYEGVVNNIVVATTKQVNVKISIAEVSQSFLEQIG 209
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
Q+ + S G F +V+ A+ + + LAE
Sbjct: 210 IQYGTSASVPGVFVQPLTSFSSS-----------------DIMSVITAIGNDSVGQILAE 252
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P L+ ISG+SASF GG+ T +T+V ++GV L V +I L +
Sbjct: 253 PNLSVISGESASFLVGGELPVVTTV--NNSTNVVYKEFGVRLDLMAKVKKDDKITLSLVP 310
Query: 335 EVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
EVS ++ ++P+ + R+A TTVEL G + VL GLL + ++ + +P + IP
Sbjct: 311 EVSSLDTQYENDSYNLPALKTRRARTTVELGDGQSFVLGGLLNSEDKESLQKVPFIGDIP 370
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
ILGALFRNS R +TE+ I AT LV+P+ + P
Sbjct: 371 ILGALFRNSVTQRNKTELIIVATVNLVQPIHPSQIQLP 408
>gi|312883308|ref|ZP_07743034.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368924|gb|EFP96450.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122]
Length = 440
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 109/439 (24%), Positives = 190/439 (43%), Gaps = 35/439 (7%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ ++I + + + + V + +PT AD + + +FG VG +VI+
Sbjct: 23 SNCSAAEILNIDQDSAKTINLKNSISTVFLVNPTIADYKIIDDNKLVIFGVGVGSTSVIV 82
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
G G ++ N ++++ + + L+ T+ I V + D VVL G+V + + +
Sbjct: 83 YGKGGSEIYNTELIVNKSLRLLKQTILARFPGETISVSNIGDQVVLDGVVSSERVKKAVS 142
Query: 162 ELS----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
L + + SG N + +++N + + +Q+ +K+T+AEV L
Sbjct: 143 RLVGEMLKKQRNVQKYSDASGGNTQLEYNYHEIINNMKVLSTEQINVKITVAEVASSFLN 202
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
+IG +S G +G + F V+ A+ +
Sbjct: 203 EIGVSYSEMGGEAGKFVNKITHFSA-----------------KDIVAVISAVGNESVGHV 245
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LAEP L+ ISG+ ASF GG+ S++ +YGV L V I L
Sbjct: 246 LAEPNLSVISGEKASFLVGGEIPI--GVRDDKGVSISYKEYGVKLSMIAKVADSENIRLS 303
Query: 332 IQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ EVS V PS + R+A+TTV+L G + VLAGLL+ + ++ +P
Sbjct: 304 LFPEVSTIDENHVTKVGQLTAPSLQTRRAETTVQLKDGQSFVLAGLLRSEERESLSKVPY 363
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
L IPI+GALF +S+ +R +TE+ I AT LV PV + P + D +
Sbjct: 364 LGDIPIIGALFSHSKTDRSKTELIIVATVNLVTPVDPDKVKLP--GFHRTSDIERLLNID 421
Query: 448 VNKIYGPKEASEVEGQNYK 466
++++ PK + +
Sbjct: 422 LSELTEPKLGDMIIQGGFN 440
>gi|325108090|ref|YP_004269158.1| type II and III secretion system protein [Planctomyces brasiliensis
DSM 5305]
gi|324968358|gb|ADY59136.1| type II and III secretion system protein [Planctomyces brasiliensis
DSM 5305]
Length = 714
Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats.
Identities = 111/486 (22%), Positives = 193/486 (39%), Gaps = 39/486 (8%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISD--VEIGKGKKISIGLNKVII 59
R R + L + + A + + + ++S+ +
Sbjct: 22 RVFGRVLSVNTAALLLLGSLVCVQPSSASGQTHAPVTEGEIYHVLSATNQLSLTERFSRV 81
Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
L++ + V DP V +P + + + G ++L+ K +++ +E D
Sbjct: 82 LELEKRITRVDGFDPAVLTVSALTPHRVRIQAVSAGVTTLVLVDEFDKT-YTIEVFVEGD 140
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ +L+ + RF DS+++ V D+VVL G+V + E++E F
Sbjct: 141 VRYLQSYIDRFFPDSSVKAVKVKDSVVLRGVVADPSHISQITEVAEQFFP---------- 190
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---- 235
KV+N + +QV L+V I E +R ++Q+GF S S S + +
Sbjct: 191 ---KVINHMQFGAANQVRLQVRIMEAQRSRIRQLGFNWSFLNGSGYVSSNPGSLSSPLGA 247
Query: 236 ------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G S V F L AL++ +R L E ++ A SG+
Sbjct: 248 NLTPGQTPGLSYGGAGLSDSSISFGVVNANSVFRGFLEALKQEGLLRILVETSVVADSGR 307
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339
AS SGG+ V + G SV ++GV L P VL G++ L I E SE
Sbjct: 308 PASLLSGGEFP-ILVPQALGTLSVEWKEFGVKLEAVPIVLGQGQVILEIAPEFSERDFAN 366
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
++ +P+ R+A+T V + G T+++ GL+ + +P L ++P +GA FR
Sbjct: 367 AAQLDNTTVPAITTRRANTQVRMKFGQTLMIGGLIATRYTAETDKVPFLGELPGIGAAFR 426
Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
R++ ETE+ I TP V P+ + P V D + F+ +
Sbjct: 427 RVRYDENETELIILVTPEYVAPLDPHQVPDGGPGQFSDVPTDRELFWQGMIEVPNYGGPM 486
Query: 458 SEVEGQ 463
G
Sbjct: 487 PPNAGG 492
>gi|227820510|ref|YP_002824481.1| type II and III secretion system protein RhcC2 [Sinorhizobium
fredii NGR234]
gi|227339509|gb|ACP23728.1| type II and III secretion system protein RhcC2 [Sinorhizobium
fredii NGR234]
Length = 447
Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats.
Identities = 112/435 (25%), Positives = 194/435 (44%), Gaps = 21/435 (4%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
R T L + ++ + ++ + + + + IL+
Sbjct: 5 RSLRPVRTGKVFLLILLTVLAVHCALPSASAQVKVDAINGQV-----LELTVGEGTILRF 59
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
V+ V ++D ADV V SP +Y++ G N+I + D + + + +
Sbjct: 60 DEPVESVFLADTAIADVRVVSPGVVYIYATKTGDTNLIALSADQMTRGTVQVRVSGNPRA 119
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
E + + + + + V G R + ++ + +++ ++ +
Sbjct: 120 AEQSALALQPTTRVDISLFGGQYVGTGQTRNVGEAMDMESVLQSY----------STPDR 169
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+N IAG +QV ++V AEV R+ L + G S+ +S S G +
Sbjct: 170 PALNNTTIAGSNQVNIRVRFAEVARNELTRFGIDWSLFVNSGSFSFGIVRTGGASNEDDT 229
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
G ++ D + +L AL+ + LAEP +TA++GQ+ASF +GG+ V +
Sbjct: 230 G-IAIGARGDHVNVNVLLDALQANGILTILAEPNITAVTGQTASFLAGGEIPVP-VPAGD 287
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADT 358
G + +GV L FTPT+L RI L+++ EVS +PS R+R+ADT
Sbjct: 288 GQIGIEYKQFGVSLQFTPTLLPNNRIALQVRPEVSSVSQDSVVSISGLVVPSLRIRRADT 347
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ SG T +AGL + Q P++ +PILG LF++ RF R ETE+ I TP+L
Sbjct: 348 AVEVGSGQTFAIAGLFQRQESQTLNKTPVVGDVPILGELFKSKRFQRNETELVILITPYL 407
Query: 419 VKPVAMRDLSRPDDH 433
V P + R++ P D
Sbjct: 408 VTPTSERNMKTPLDS 422
>gi|218676249|ref|YP_002395068.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
gi|218324517|emb|CAV25991.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
Length = 446
Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats.
Identities = 110/442 (24%), Positives = 186/442 (42%), Gaps = 43/442 (9%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ +++ + + + V V++ AD + + ++G G +VI+
Sbjct: 27 ASELMNLDQGAAKTINLKRQISTVFVANQEVADYKIIDENKVVVYGVGQGATSVIVYDRG 86
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G ++ N ++++ + + L+ TL D N+ V V D VVL G+V + + Q+ L
Sbjct: 87 GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVG 146
Query: 166 TFLSQSGRNQY-----------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
L + R A + +V+N L + +Q+ +K+T+AEV
Sbjct: 147 EMLKKDRRRAAYELKDADGEALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSS 206
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L ++G +S +G G + +V+ A
Sbjct: 207 FLTELGVTYSDSGQ------------------PGTFVNKLLDFTAQDIVSVISASGDDKI 248
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
R LAEP L+ ISG+ ASF +GG+ +++ +YGV L V I
Sbjct: 249 GRVLAEPNLSVISGEQASFLAGGEIPIAVRDQDG--ITISYKEYGVKLAMVAKVTDTENI 306
Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
L + EVS +PS R R+A TTV L G + VLAGLL + ++
Sbjct: 307 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 366
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
IP+L IPILGALF +S NR +TE+ I AT LV PV + P + D +
Sbjct: 367 IPILGDIPILGALFSHSSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 424
Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
++++ P+ + + +
Sbjct: 425 RIDLSELDEPELENTINQGGFN 446
>gi|197118220|ref|YP_002138647.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
gi|197087580|gb|ACH38851.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
Length = 494
Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats.
Identities = 118/459 (25%), Positives = 193/459 (42%), Gaps = 62/459 (13%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
V + +N+ +++ + + V ++ P A++VV SP + + GK VG +I
Sbjct: 23 PVAAHAAVTTEVVVNRSVLVDLHTKSERVSIASPDVAELVVISPTQLQINGKKVGSTTLI 82
Query: 101 LIGHDGKQ------MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
+ GK + + ++E I L+ +++ NI+V+ +DT+VL G
Sbjct: 83 VWDTAGKTSFFDVRVKRNESVLESQIEALQDQIQQMAPKDNIKVDYANDTIVLSGTAANE 142
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKK---------------------------VMNL 187
Q +A++L++ + + +G A ++ V+N
Sbjct: 143 QTVAKALQLAQAYTAGNGSKAGAPATDPPLDTSRSSYQLSETQTGRQGGDADTVITVLNH 202
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
+ I QV L+V +A+V + LK +G I G+S+ + G+ + D SV
Sbjct: 203 VEIVEPQQVLLEVKVAQVDKTALKSLGISAFIRGASAEGFSNLVGAPVGELAIKNPDGSV 262
Query: 248 KGVLDR-------------------------FSFETVLHALERATAIRTLAEPTLTAISG 282
+ VL AL + LAEP L SG
Sbjct: 263 RSQATGIAGPIPGLANFTPIDSYQLGVSSFKAGIGAVLRALVTKNLAKVLAEPNLMVQSG 322
Query: 283 QSASFTSGGQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEP 339
Q F +G + Y VS ATS+ D GV L+F P VL G I L+I EVS
Sbjct: 323 QVGKFLAGSKIPYSIVSGVGALSATSIQFIDVGVKLNFKPEVLENGLISLKIDPAEVSSI 382
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ P R+ T V+L G +++LAGLL+++ + IP+L IPILGALFR
Sbjct: 383 TGVLAVNGYPIIDTREVRTRVKLKDGESLILAGLLQEEAIKAMSKIPILGDIPILGALFR 442
Query: 400 NSRFNREETEIFIAATPFLVKPVAMRD-LSRPDDHYSVE 437
+++ + +E E+ TP LV A + P D
Sbjct: 443 STQDDIKEKELVFFITPKLVTASAPGSRILLPTDKPLTP 481
>gi|307133496|dbj|BAJ19008.1| RcpA [Aggregatibacter actinomycetemcomitans]
Length = 460
Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats.
Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
AV+ + S+ ++Q + + VS P AD + T ++ K
Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
G+ V G DG+ + + + ++ + + L+ ++N+ V+ V V+ G
Sbjct: 77 GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKA 136
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200
R+ ++S + L + V++ NIA Q+ +K+
Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKL 196
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
++ EV + + + +G S S GG ++G LD +
Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+AL+ + + LAEP ++ +SG++A GG+ + G+ ++ ++G+ L
Sbjct: 252 NALDNQSNGKILAEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
+ RI L + VS N G++P + RKA + E+ +G + ++ GL +
Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +PLL IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD +
Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428
Query: 438 DDAKAFFF 445
+ FF
Sbjct: 429 GTMERFFH 436
>gi|154250526|ref|YP_001411350.1| type II and III secretion system protein [Parvibaculum
lavamentivorans DS-1]
gi|154154476|gb|ABS61693.1| type II and III secretion system protein [Parvibaculum
lavamentivorans DS-1]
Length = 461
Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats.
Identities = 109/438 (24%), Positives = 191/438 (43%), Gaps = 32/438 (7%)
Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
P+ + + + + +SI + IL++ V + +++P+ DV V S R +
Sbjct: 22 PMLAVLLTALLLPQGPVLAAETLSISIGGQRILKLGQTVDRIAIANPSIVDVKVISSREL 81
Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
+ G++ G ++ + G + +++ DI L+ L R A ++++ VVL
Sbjct: 82 RILGQSEGTTDLDIWFAGGAS-KSYYVVVGADITGLQSELARDPALADVKATETGKGVVL 140
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V +++ QRA E++ ++L + ++L +A V ++V A V
Sbjct: 141 KGQVYSLEAQQRAREIARSYLGKDAG------------DMLTVADRRMVAVEVRFAAVST 188
Query: 208 DILKQIGFQHSITGSSS-------GPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFS 255
LK +G +S S SF G + F++ +
Sbjct: 189 STLKALGLNFQSLDNSFQFAAIGPNASSSFGYTPGAGLDPDTSLPLSQAFNLFLAWPGSN 248
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYG 313
V+ AL A + LAEPTL SG+ A F +GG+ S G ++ +G
Sbjct: 249 LLGVISALSSANLAQLLAEPTLLVRSGEDADFLAGGEIPIPVPQSGVGNGTVTIEYKKFG 308
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369
V L TVL RI L++ EVSE V +P+ R R TT+EL G + V
Sbjct: 309 VQLGVAATVLDNDRIVLKVSPEVSELDYTNALVVQGFRIPALRTRSTRTTIELGDGQSFV 368
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL-S 428
LAGL+ +++ IP + ++P++G F+ ++ RE E+ I ATP LV P+ ++
Sbjct: 369 LAGLMYSTSGNIEDRIPGIGELPVIGTFFKRTQNARERQELIIVATPRLVSPMEAGEVPP 428
Query: 429 RPDDHYSVEDDAKAFFFN 446
P + + + D N
Sbjct: 429 LPGEGHVYDSDLGQNLLN 446
>gi|4768955|gb|AAD29695.1| rough colony protein A [Aggregatibacter actinomycetemcomitans]
Length = 460
Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats.
Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
AV+ + S+ ++Q + + VS P AD + T ++ K
Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
G+ V G DG+ + + + ++ + + L+ ++N+ V+ V V+ G
Sbjct: 77 GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGEA 136
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK-----------VMNLLNIAGEDQVTLKV 200
R+ ++S + L + V++ NIA Q+ +K+
Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKL 196
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
++ EV + + + +G S S GG ++G LD +
Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+AL+ + + LAEP ++ +SG++A GG+ + G+ ++ ++G+ L
Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
+ RI L + VS N G++P + RKA + E+ +G + ++ GL +
Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +PLL IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD +
Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428
Query: 438 DDAKAFFF 445
+ FF
Sbjct: 429 GTMERFFH 436
>gi|307548787|dbj|BAJ19109.1| RcpA [Aggregatibacter actinomycetemcomitans]
gi|307548802|dbj|BAJ19123.1| RcpA [Aggregatibacter actinomycetemcomitans]
Length = 460
Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats.
Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
AV+ + S+ ++Q + + VS P AD + T ++ K
Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
G+ V G DG+ + + + ++ + + L+ ++N+ V+ V V+ G
Sbjct: 77 GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKA 136
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200
R+ ++S + L + V++ NIA Q+ +K+
Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKL 196
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
++ EV + + + +G S S GG ++G LD +
Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+AL+ + + LAEP ++ +SG++A GG+ + G+ ++ ++G+ L
Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
+ RI L + VS N G++P + RKA + E+ +G + ++ GL +
Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +PLL IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD +
Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVIYPD--FEKT 428
Query: 438 DDAKAFFF 445
+ FF
Sbjct: 429 GTMERFFH 436
>gi|8096202|dbj|BAA96101.1| unnamed protein product [Actinobacillus actinomycetemcomitans]
Length = 460
Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats.
Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
AV+ + S+ ++Q + + VS P AD + T ++ K
Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
G+ V G DG+ + + + ++ + + L+ ++N+ V+ V V+ G
Sbjct: 77 GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKA 136
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200
R+ ++S + L + V++ NIA Q+ +K+
Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKL 196
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
++ EV + + + +G S S GG ++G LD +
Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+AL+ + + LAEP ++ +SG++A GG+ + G+ ++ ++G+ L
Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
+ RI L + VS N G++P + RKA + E+ +G + ++ GL +
Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +PLL IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD +
Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428
Query: 438 DDAKAFFF 445
+ FF
Sbjct: 429 GTMERFFH 436
>gi|318604223|emb|CBY25721.1| type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 410
Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats.
Identities = 105/403 (26%), Positives = 187/403 (46%), Gaps = 33/403 (8%)
Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
+++ ++ V VS AD + ++ ++ K G A IL + + IL++
Sbjct: 1 MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
I +R +S+I + + D+ +L G V T + + + + +
Sbjct: 61 TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120
Query: 179 SSSK-------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
+V+N + + G +QV +K+TIAEV +D + IG S G+ SG
Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ F + KF ++G ++HA+ + R LAEP L+ +SG+SA
Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDGSIARVLAEPNLSVLSGESA 227
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IG 342
SF GG+ V+++ +T +T +G+ L+ V + RI +++ EVS
Sbjct: 228 SFLVGGELPL--VNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
PS+R RKA TT+EL G + +L GL+ ++ + IP + IPILGA F N+
Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFSNAE 345
Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
+ +TE+ + AT LV+PV+ +++ P ++ + FF
Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFFN 386
>gi|323493934|ref|ZP_08099051.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546]
gi|323311875|gb|EGA65022.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546]
Length = 441
Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats.
Identities = 107/442 (24%), Positives = 185/442 (41%), Gaps = 43/442 (9%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ +S+ + + + V V++ AD + + ++G G +VI+
Sbjct: 22 ASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKIIDENKVVVYGVGQGSTSVIVYDRG 81
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G ++ N ++++ + + L+ T+ D N+ V V D VVL G+V + + Q+ L
Sbjct: 82 GNEIYNAELVVNQSLRLLKQTIIARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVG 141
Query: 166 TFLSQ-----------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
L + + + + +V+N L + +Q+ +K+T+AEV
Sbjct: 142 EMLKKERRRHTYELRDADGEEYDELDYTSRFTYDQVINNLKVLTTEQINVKLTVAEVSSS 201
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L ++G +S +G G + +V+ A
Sbjct: 202 FLTELGVTYSDSGE------------------PGKFVNKLLDFTAQDIVSVISASGDDKI 243
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+ LAEP L+ ISG+ ASF +GG+ S++ +YGV L V I
Sbjct: 244 GQVLAEPNLSVISGEQASFLAGGEIPIAVRDEDG--ISISYKEYGVKLAMVAKVTDSENI 301
Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
L + EVS +P+ R R+A TTV L G + VLAGLL + ++
Sbjct: 302 RLTLIPEVSSIDESNKTSTGLISVPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTK 361
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
IP L IPILGALF ++ NR +TE+ I AT LV PV + P + D +
Sbjct: 362 IPFLGDIPILGALFSHTTTNRSKTELIIVATVNLVDPVESEQVKLP--SFKRTSDIERLL 419
Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
++++ P+ +E +
Sbjct: 420 RIDLSELNEPELEGTIEQGGFN 441
>gi|262173894|ref|ZP_06041571.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus MB-451]
gi|261891252|gb|EEY37239.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus MB-451]
Length = 419
Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats.
Identities = 106/439 (24%), Positives = 182/439 (41%), Gaps = 42/439 (9%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+++ + + + V V+D T AD + + ++G G +VI+ G ++
Sbjct: 1 MNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGGNEI 60
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
N ++++ + + L+ TL D +I V V D VVL G V + + + L L
Sbjct: 61 YNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLK 120
Query: 170 Q------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+ A V+N L + +Q+ +K+TIAEV L
Sbjct: 121 KNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLS 180
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
++G + G G ++ ++ A +
Sbjct: 181 ELGVSYGDIGGGD----------------VGKFYNKLLDFTAQDIVAIIAASGNDDIGQV 224
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LAEP L+ ISG++ASF GG+ T ++ +YG+ L V I L
Sbjct: 225 LAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLS 282
Query: 332 IQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ EVS ++ + PS + RKA TTV+L G + VLAGLL + ++ IP+
Sbjct: 283 LLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPI 342
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
L IPILGALF +++ +R++TE+ I AT LV PV + P + D +
Sbjct: 343 LGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLLRID 400
Query: 448 VNKIYGPKEASEVEGQNYK 466
++ + P+ + +
Sbjct: 401 LSGVDEPELQRTINAGGFN 419
>gi|262275469|ref|ZP_06053279.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Grimontia hollisae CIP 101886]
gi|262220714|gb|EEY72029.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Grimontia hollisae CIP 101886]
Length = 454
Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats.
Identities = 107/425 (25%), Positives = 186/425 (43%), Gaps = 33/425 (7%)
Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
+ I++G L+ + V +SDP AD V + +FG+ +G +I+
Sbjct: 25 QASAAGVINLGTGDARSLEFNAVIGTVFISDPDIADYQVIDSNKLVVFGRKLGTTTLIVF 84
Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
D + + + I++ + + +E L D ++ V + + VVL G+V T ++
Sbjct: 85 DEDSQTLSHRKIVVNQSLTKIEQILAIRYPDVDVSVLNMGEQVVLTGVVPTQKEKNEIYA 144
Query: 163 LSETFLSQS----------------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
+ LS+ + A + + ++N L + QV +K+TIAEV
Sbjct: 145 VVGELLSKKFVERRTQWKTSFDEEFDIDFMARRTYEGLVNNLEVTVTKQVNVKLTIAEVN 204
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
++ ++G + F G G G + + A+
Sbjct: 205 SSLINELGIKW---------GTILEDGFAGNGQFFKGITGFGGRT--TNVAAYISAINDD 253
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+ L+EP ++ ISG++ASF GG+ + ++G+ L VL
Sbjct: 254 NVGQVLSEPNVSVISGETASFLVGGEIPITYRIDDG--YRIEYKEFGIGLDLAAEVLRDD 311
Query: 327 RIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L + +VS G D+PS++VR+A TT+EL G + VLAGLL + ++
Sbjct: 312 KIKLSVMPQVSSVDNQYGDTLLDIPSFKVRRARTTLELGDGDSFVLAGLLSSEDEEALSK 371
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
IP + +PILGALFRN+ R +TE+ I AT LV+PV+ +++ P FF
Sbjct: 372 IPFIGDVPILGALFRNTSTTRRKTELVIVATVSLVEPVSSANITIP--SIQRTSALSRFF 429
Query: 445 FNRVN 449
+N
Sbjct: 430 GVNLN 434
>gi|119566857|gb|ABL84265.1| RcpA [Yersinia ruckeri]
Length = 438
Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats.
Identities = 106/434 (24%), Positives = 191/434 (44%), Gaps = 34/434 (7%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ + + + I+ V ++ + S AD + ++ ++ K G A L
Sbjct: 31 HAEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKK 90
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
K + + + +++ I+ + +R DS I + + + +L G +T + + ++
Sbjct: 91 NKPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVA 150
Query: 166 TFLSQ----SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
+ + Y S + N + I +QV +K+TIAEV +D IG S G
Sbjct: 151 NAIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIG 210
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ SG + G T++ A+ + R LAEP L+ +S
Sbjct: 211 NVSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLS 251
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340
G++ASF GG+ + + +T +V+ ++G+ L+ V RI +++ EVS
Sbjct: 252 GETASFLVGGELPIVSTTQNT--INVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDK 309
Query: 341 --IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
P+ R RKA TTVEL G + +L GL+ + ++ + IPL+ IPILGALF
Sbjct: 310 MFNVDGGSSYPALRTRKAGTTVELGDGESFILGGLISREDKENLKKIPLIGDIPILGALF 369
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
R + + +E+ + AT LVKP+ +D+ PD + + FF N + +
Sbjct: 370 RKTGTQTKRSELVVIATVNLVKPMQSKDVGLPD--FMKTSTLERFF----NYTFIRESKQ 423
Query: 459 EVEGQNYKGAIGFI 472
E + + GFI
Sbjct: 424 EKLAKKFLSQGGFI 437
>gi|296124072|ref|YP_003631850.1| type II and III secretion system protein [Planctomyces limnophilus
DSM 3776]
gi|296016412|gb|ADG69651.1| type II and III secretion system protein [Planctomyces limnophilus
DSM 3776]
Length = 772
Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats.
Identities = 107/515 (20%), Positives = 198/515 (38%), Gaps = 64/515 (12%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAA--VINISDVEIGKGKKISIGLNKVIILQVPVD 65
+ ++ L V + +++ A + + + + + + + ++ +
Sbjct: 131 VPAVNALPLPQRAVPVRTVQDSNQSDTARQLHRLIESMPSSEEDLEVIHRRSQLIVTRAN 190
Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI----------L 115
V ++DP DVV + PR + + G + G + L + L +
Sbjct: 191 VIRAAIADPNVIDVVQYGPREISIIGVSRGTTTLTLWFEGAAEPLIYLVKVIRDPALDFQ 250
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR-- 173
D LE L+ +S + + +S +V+ G R +++ + + +
Sbjct: 251 RRLDYGKLEKKLQTLFPNSKVYLIPMSYKIVVRGQARDAEEAAHILSIVRGEVINQEGSL 310
Query: 174 ---------------------------------NQYANSSSKKVMNLLNIAGEDQVTLKV 200
++ ++ ++N L + GE QV+L V
Sbjct: 311 GGPQPFLGGLGGDLGGGSSTIDNGAIGGIGNSFGGASDLAAGFIINELRVPGEFQVSLTV 370
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
IAE+ R + + G S+ + S +S GG ++ G+ D +L
Sbjct: 371 RIAELNRSEMFKAGADISVLFNGSQLIESSLT---------GGAATLGGIFDNGDVSILL 421
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHF 318
L+ + L EP LT +SG+ A F +GG+ + S T +G +
Sbjct: 422 DWLKTNGIGKILVEPRLTVLSGRQARFLAGGEFAVPTIIGIAGAQGQSTTFRGFGTSVLV 481
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
TPTVL I L E S+ + +P R+ DTTVE+ G T+ LAGL +
Sbjct: 482 TPTVLDRDLIRLSTIAEYSDLNQANSVQGIPGTNARRIDTTVEMREGQTLALAGLYSHLM 541
Query: 379 QQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR-PDDHYSV 436
+ IP L IP +G ALF ++E E+ I TP +V+P+ ++ P +
Sbjct: 542 KTNISKIPFLGDIPKIGPALFSRKEKTQDENELLILITPDIVRPMDPEEVPPVPGFEVTY 601
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNY-KGAIG 470
D + F++NR+ G + + Y G+ G
Sbjct: 602 PGDHEFFWYNRIE---GTPDTGHYQVPPYGSGSNG 633
>gi|32473554|ref|NP_866548.1| outer membrane channel for pilus assembly CpaC [Rhodopirellula
baltica SH 1]
gi|32398234|emb|CAD78329.1| putative outer membrane channel for pilus assembly CpaC
[Rhodopirellula baltica SH 1]
Length = 589
Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats.
Identities = 113/455 (24%), Positives = 193/455 (42%), Gaps = 36/455 (7%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGK------KISIGLNKVIILQVPVDVQDV 69
L ++ +A L + A G + ++ + + IL + +
Sbjct: 20 LLATAFGLAMLSVSQPVMAQSATTLASAAGDHQINQTVERMDLIVKSSRILSLGERIPRF 79
Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
V + S + +FGK G + L + K + +D+ + D +E L
Sbjct: 80 QVHNEEVLGATPVSENQIQVFGKTPGTTQINLWDTEDK-LYTIDVTVVADAREVEGILNS 138
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
+ +++RV + ++ ++ G V ++ D +AV ++E F + V+N +
Sbjct: 139 QLPLASLRVTPIGESAIISGYVTSVDDVDKAVAITEQFYTT-------------VINNIQ 185
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFG-----GKFVS 240
+ G QV L I EV R L+++G +I + GPS G F
Sbjct: 186 VVGIQQVLLHTKIMEVSRTKLRELGVDLAILDDNFTLLNGPSGVLDVGAGIVEGDAGFGP 245
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+ +FET+++AL + LAEPT+ A G+ A FT GG+ V
Sbjct: 246 IPLGDTNLRFNVNGNFETLINALHEQRLTKLLAEPTVVATHGRPARFTVGGRIP-TIVPG 304
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKA 356
G +T DYG + F P V+ PGRI L ++ EVSEP VN ++ ++ R
Sbjct: 305 QNGQVQITYEDYGTSIDFLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTTRYV 364
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T VE+ +G T LAGLL+ + P +P +G LFR + R E E+ I TP
Sbjct: 365 ETAVEMQAGQTFALAGLLQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLILVTP 424
Query: 417 FLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN 449
LV+ + ++ R P + DD + + + +
Sbjct: 425 ELVEAMDPHEVPRGGPGMNSHSPDDKEFYLYGHIE 459
>gi|254506218|ref|ZP_05118362.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
gi|219551036|gb|EED28017.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
Length = 431
Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats.
Identities = 105/413 (25%), Positives = 186/413 (45%), Gaps = 34/413 (8%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+++G + + ++ V +SDP AD V + +FGK VG +++ + + +
Sbjct: 12 MNLGEGEAKAINTKAEIASVFISDPQIADYQVVDKNKLVIFGKKVGTVSLLAFDDNSETI 71
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
++ +++ + + H++ ++ D +I + + + VVL G V + + L L+
Sbjct: 72 ISRKLVVNQSLIHIQQQVQIRYPDVSISIYNLGEQVVLAGKVPSEKIRDEINILVGELLN 131
Query: 170 QSGRNQY---------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+ + K ++N + ++ QV +K++IAEV + L+Q G
Sbjct: 132 KEYEDYKIEWDLGENTYEMEFMTRRHYKGIVNNIEVSTTKQVNVKLSIAEVSQSFLEQFG 191
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
++ SS+ D F + +V+ A+ + LAE
Sbjct: 192 VKYGTLDSSANFMGGTFVDQLINFSAA-------------DIVSVISAIGDDAVGQVLAE 238
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P L+ ISG++ASF GG+ TV G T+V ++G+ L VL +I L +
Sbjct: 239 PNLSVISGETASFLVGGEIPVVTVV--DGGTNVLFKEFGIRLEMMAKVLQDDKIKLSLMP 296
Query: 335 EVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
EVS +P+ + R+A TTVEL G + VL GLL + ++ +P + +P
Sbjct: 297 EVSSLDTQYQNDRYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLSRVPFIGDVP 356
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
ILGALFR++ R +TE+ I AT LVKPV + P + FF
Sbjct: 357 ILGALFRHTETVRNKTELVIVATVNLVKPVNPSQIQLPT--MKRTTTMQRFFN 407
>gi|238755450|ref|ZP_04616790.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473]
gi|238706291|gb|EEP98668.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473]
Length = 430
Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats.
Identities = 106/434 (24%), Positives = 191/434 (44%), Gaps = 34/434 (7%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ + + + I+ V ++ + S AD + ++ ++ K G A L
Sbjct: 23 HAEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKK 82
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
K + + + +++ I+ + +R DS I + + + +L G +T + + ++
Sbjct: 83 NKPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVA 142
Query: 166 TFLSQ----SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
+ + Y S + N + I +QV +K+TIAEV +D IG S G
Sbjct: 143 NAIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIG 202
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ SG + G T++ A+ + R LAEP L+ +S
Sbjct: 203 NVSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLS 243
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340
G++ASF GG+ + + +T +V+ ++G+ L+ V RI +++ EVS
Sbjct: 244 GETASFLVGGELPIVSTTQNT--INVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDK 301
Query: 341 --IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
P+ R RKA TTVEL G + +L GL+ + ++ + IPL+ IPILGALF
Sbjct: 302 MFNVDGGSSYPALRTRKAGTTVELGDGESFILGGLISREDKENLKKIPLIGDIPILGALF 361
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
R + + +E+ + AT LVKP+ +D+ PD + + FF N + +
Sbjct: 362 RKTGTQTKRSELVVIATVNLVKPMQSKDVGLPD--FMKTSTLERFF----NYTFIRESKQ 415
Query: 459 EVEGQNYKGAIGFI 472
E + + GFI
Sbjct: 416 EKLAKKFLSQGGFI 429
>gi|251791991|ref|YP_003006711.1| RcpA [Aggregatibacter aphrophilus NJ8700]
gi|247533378|gb|ACS96624.1| RcpA [Aggregatibacter aphrophilus NJ8700]
Length = 460
Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats.
Identities = 102/430 (23%), Positives = 190/430 (44%), Gaps = 29/430 (6%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
AV+ + S+ ++Q + + VS P+ AD + T ++ K+
Sbjct: 17 AVLGAMFSLNAYAQNFSLEKGATQLVQTKEKIDTIFVSSPSVADYEILDDNTFIIYAKDE 76
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
G+A V G DG+ + + + ++ + ++ L+ ++N+ V+ V V+ G
Sbjct: 77 GKAEVTAFGADGRPLTSDTVNVDSVVTNIADTNKQLKTHFPNTNLSVKKVGKAYVIEGKA 136
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200
RT ++S + L + ++ V++ NI Q+ +K+
Sbjct: 137 RTQEESDEVRRIVGEALGTGRKVTETKLGNESVPFLDKYSYEGVVDHSNINDTTQINVKL 196
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFET 258
T+ EV + + + +G S S GG F + GG +GVL D
Sbjct: 197 TVVEVNKKLSEAMGINWSHIAGS-------GPLLGGNFSAAGGFNGTQGVLRLDAKGISA 249
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
++AL+ + + LAEP ++ +SG++A GG+ + G+ S+ ++GV L
Sbjct: 250 FINALDNQSNGKILAEPNISMLSGETADILVGGEIPFAQ-RDKEGSPSIIYKEFGVKLAV 308
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
+ RI L + VS N G++P + R+A + E+ +G + ++ GL
Sbjct: 309 AAKLQKNNRIRLVLDQSVSTLAGNYNFEGIGNIPYFDTRRAKSLFEVANGESFIIGGLFS 368
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
+ + +PLL +PILG+ FRN+ NRE+ E+ I AT +VKPV +++ PD +
Sbjct: 369 SNDVEGINKVPLLGDVPILGSFFRNASTNREKKELVIVATVNVVKPVEEKNIVYPD--FE 426
Query: 436 VEDDAKAFFF 445
+ FF
Sbjct: 427 QTGTMERFFH 436
>gi|238793622|ref|ZP_04637245.1| Type II/III secretion system protein [Yersinia intermedia ATCC
29909]
gi|238727037|gb|EEQ18568.1| Type II/III secretion system protein [Yersinia intermedia ATCC
29909]
Length = 425
Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats.
Identities = 106/420 (25%), Positives = 183/420 (43%), Gaps = 30/420 (7%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A I + V K + + + I++ ++ V VS AD + ++ ++ K
Sbjct: 4 AIAICQTVVNQAYAKPVYLSSGESYIIKTEEEIDTVFVSTAAIADYELVGKNSIIVYAKK 63
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G A IL D M+ I++ I ++ DSN+ + + ++ +L G +
Sbjct: 64 EGTAEFILFNKDNHPMIKTTIMVNDIITSAYQRIKIEYPDSNVEINKIGNSYLLTGKAES 123
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + +++ + V+N + + +QV +K+TIAEV +D
Sbjct: 124 EEAKDTIAAIIGEAINKKREQNREDQHFNNPNYLGVINKIKLPESNQVNVKLTIAEVTKD 183
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
+ IG S +S S F + T++HA+ +
Sbjct: 184 FSENIGVDWSSISEASVGSFKFL------------------KFNATGISTLVHAINDDSI 225
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
R LAEP L+ +SG+SASF GG+ + ++ T + YG+ L+ V RI
Sbjct: 226 ARVLAEPNLSVLSGESASFLVGGEIPMFNTNQNS--TIIKYKTYGIKLNIAAKVNEKNRI 283
Query: 329 GLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+ ++ EVS PS R RKA TT+EL G + +L GL+ ++ + I
Sbjct: 284 RISMEEEVSSVDKVFNVEGGNAYPSLRTRKAATTLELGDGESFILGGLISKSERESLKKI 343
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
P + IPILGA FRN++ +++TE+ + AT LV PVA +D+ PD + + F
Sbjct: 344 PFIGDIPILGAFFRNAQTQKQQTELVVVATVSLVNPVAGKDVELPD--FMHTSTLERLFN 401
>gi|293391332|ref|ZP_06635666.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|32452623|gb|AAP43985.1| RcpA [Aggregatibacter actinomycetemcomitans]
gi|290951866|gb|EFE01985.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 460
Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats.
Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
AV+ + S+ ++Q + + VS P AD + + ++ K
Sbjct: 17 AVLGAMSSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNSFIIYAKEE 76
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
G+ V G DG+ + + + ++ + + L+ ++N+ V+ V V+ G
Sbjct: 77 GRTEVTAFGVDGRPLTSDTVNVDSVVTSIADTNKQLKSHFPNTNLSVKKVGKAYVIEGKA 136
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200
R+ ++S + L + V++ NIA Q+ +K+
Sbjct: 137 RSQEESDEVRRIVGEALGNGRKITETKLGEDALPFLDKYHYDGVVDNANIADTTQINVKL 196
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
++ EV + + + +G S S GG ++G LD +
Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLLGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+AL+ + + LAEP ++ +SG++A GG+ + G+ ++ ++G+ L
Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDKDGSPTIIYKEFGIKLAVAA 310
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
+ RI L + VS N G++P + RKA + E+ +G + ++ GL +
Sbjct: 311 KLQKNDRIRLALDQSVSTIAGNYNFEGVGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +PLL IPILG+ FRN+ R++ E+ I AT +VKPV +D+ PD +
Sbjct: 371 DLEGINKVPLLGDIPILGSFFRNATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428
Query: 438 DDAKAFFF 445
+ FF
Sbjct: 429 GTMERFFH 436
>gi|26000712|gb|AAN75208.1| RcpA [Aggregatibacter actinomycetemcomitans]
Length = 460
Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats.
Identities = 93/428 (21%), Positives = 179/428 (41%), Gaps = 25/428 (5%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
AV+ + S+ ++Q + + VS P AD + T ++ K
Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
G+ V G DG+ + + + ++ + + L+ ++N+ V+ V V+ G
Sbjct: 77 GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKA 136
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK-----------VMNLLNIAGEDQVTLKV 200
R+ ++S + L + V++ NIA Q+ +K+
Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKL 196
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
++ EV + + + +G S S GG ++G LD +
Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+AL+ + + L EP ++ +SG++A GG+ + G+ ++ ++G+ L
Sbjct: 252 NALDNQSNGKVLPEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
+ RI L + VS N G++P + RKA + E+ +G + ++ GL +
Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +PLL IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD +
Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVIYPD--FEKT 428
Query: 438 DDAKAFFF 445
+ FF
Sbjct: 429 GTMERFFH 436
>gi|238782881|ref|ZP_04626910.1| Type II/III secretion system protein [Yersinia bercovieri ATCC
43970]
gi|238716304|gb|EEQ08287.1| Type II/III secretion system protein [Yersinia bercovieri ATCC
43970]
Length = 426
Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats.
Identities = 104/409 (25%), Positives = 186/409 (45%), Gaps = 31/409 (7%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
K + I + I++ ++ V VS AD + + ++ ++ K+ G +IL
Sbjct: 17 ANAKSVYISPGESYIIKTEAEIDTVFVSSAAVADYELVNKNSIIVYAKSEGTTEIILFDD 76
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
+ + IL+ I + DSNI ++ + D+ +L G+V + ++ +
Sbjct: 77 KHQVLAKKTILVNNIINAANKRVLIEYPDSNIDIDKIGDSYILTGIVESEEEKDTLATIV 136
Query: 165 ETFLSQSGRNQY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + ++N L + +QV +K+TIAEV +D + +G S
Sbjct: 137 GEAIGSQKEKTSERQYLSTPDYAHIVNKLKLPQANQVNVKLTIAEVTKDFTENVGVDWST 196
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
G + G + + G T++HA+ + R LAEP L+
Sbjct: 197 MGDAIGSFQFVKFNANG-------------------ISTLVHAINDESIARVLAEPNLSV 237
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
+SG+SASF GG+ S++ + +VT ++G+ L+ V RI + + EVS
Sbjct: 238 LSGESASFLVGGEIPI--ASNTENSQTVTYKEFGIKLNIGAKVNEKKRIRILLNEEVSSI 295
Query: 340 VIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
PS + RKA TT+EL G + +L GL+ + ++ + IP + IPILGA
Sbjct: 296 GKSFSMEGGDSYPSLKTRKAATTLELGDGESFILGGLISNSERESLKKIPFIGDIPILGA 355
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
LFRN++ + +TE+ + AT LVKPV+ +++ PD + + F
Sbjct: 356 LFRNAQTEQSQTELVVIATVNLVKPVSRKEIELPD--FMHTSTLERLFN 402
>gi|312116090|ref|YP_004013686.1| type II and III secretion system protein [Rhodomicrobium vannielii
ATCC 17100]
gi|311221219|gb|ADP72587.1| type II and III secretion system protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 519
Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats.
Identities = 119/494 (24%), Positives = 209/494 (42%), Gaps = 55/494 (11%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPP--------------IKEANAAVINISDVEIGKGKKI 50
RT ++ S ++ AA + +
Sbjct: 15 SRTLKLLICTIFLGLGASAYATEKPPSPVPPSKQPVKKVQGFGAAAPLYHLNTQNERIDV 74
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
+ LN+ ++V + LV++ ADVV + ++ + GK +G + L+ D + +
Sbjct: 75 RVVLNRSENVKVEYPFTEALVTNSDIADVVPLTNASINILGKKIGNTRLSLLDQDKRVIG 134
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
+DI + D+ L +R + SN+RV V+ +++ G RA+ L+E F
Sbjct: 135 IVDIEVSHDVDMLRRVMRDNPSFSNLRVAAVNGRIMIAGQASDAVALSRALALAEQF--- 191
Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK------------------- 211
+ +V N + +A QV L+V E R++ +
Sbjct: 192 ---------APGQVTNAMTVASPQQVMLEVRFIEASRNLARGVGVNVSGGGRYAGGTTGV 242
Query: 212 -QIGFQHSITGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETVLHALERAT 267
+ + SIT S+G + + +D S G + + + + + ALE
Sbjct: 243 ETLKEKSSITSDSTGITTNLISDLAAGLGSNLVPFGAMTGRVIGGSAPIDVTIRALESQG 302
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
R LAEP L A+SG +ASF +GG+ + V+ + + +G+ L FTPTVL+ +
Sbjct: 303 LARRLAEPNLVALSGDTASFLAGGEFPFP-VAGTNNTITTEFKKFGIGLAFTPTVLARRQ 361
Query: 328 IGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
I L+I+ EVSE + ++P VR+A TTVEL G + +AGL++
Sbjct: 362 INLKIEPEVSEIDYSAAVKIGNVEVPGLSVRRASTTVELRDGQSFAIAGLMQGFHNADTR 421
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSVEDDAKA 442
+P + +PILGAL R++ F ++ET++ I TP LV+P+ D P + +D +
Sbjct: 422 QLPWIGDVPILGALTRSTSFQKKETDLVIIVTPCLVQPMVPGDAQGSPLANRRPGNDEEF 481
Query: 443 FFFNRVNKIYGPKE 456
F +
Sbjct: 482 FIAGKQEVQTSRPR 495
>gi|323495637|ref|ZP_08100708.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
pilus assembly [Vibrio sinaloensis DSM 21326]
gi|323319272|gb|EGA72212.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
pilus assembly [Vibrio sinaloensis DSM 21326]
Length = 440
Score = 259 bits (661), Expect = 8e-67, Method: Composition-based stats.
Identities = 103/413 (24%), Positives = 181/413 (43%), Gaps = 38/413 (9%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+++G + + ++ V +S+P AD V + +FGK VG +++ + +
Sbjct: 25 VNLGEGEAKAITTKQEIASVFISNPEIADYQVVDKNKLVVFGKKVGSVSLLAFDDNSNTI 84
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
++ +++ + + H++ ++ + +I + + + VVL G V + + L L
Sbjct: 85 VSRKLVVNKSLIHIQQQIQLRYPNISISLYNLEEQVVLAGKVPSEKIRDEINILVGELLE 144
Query: 170 QSGRNQY---------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+ + ++N + +A QV +K++IAEV + L++ G
Sbjct: 145 KEYEDHKIEWKIGTETYEMEFMTRRHYLGIVNNIEVATTKQVNVKLSIAEVSQSFLEEFG 204
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
Q+ +G +G +F +V+ AL T + LAE
Sbjct: 205 VQYGSSGQGAGTFVDQLVNFSAS-----------------DIVSVITALGDDTVGQVLAE 247
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P L+ ISG+SA F GG+ T+ G T+V ++G+ L VL +I L +
Sbjct: 248 PNLSVISGESAHFLVGGELPVVTII--DGGTNVLYKEFGIRLEMMAKVLEDDKIKLSLLP 305
Query: 335 EVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
EVS +P+ + R+A TTVEL G + VL GLL + ++ +P + +P
Sbjct: 306 EVSSIDSQYQNERYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLRRVPFIGDVP 365
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
ILGALFR+S R TE+ I AT LV PV + P + FF
Sbjct: 366 ILGALFRHSETVRNRTELVIVATVNLVNPVNPSQIQLPT--MKRTTTMQRFFN 416
>gi|85707702|ref|ZP_01038768.1| type II secretion system protein [Erythrobacter sp. NAP1]
gi|85689236|gb|EAQ29239.1| type II secretion system protein [Erythrobacter sp. NAP1]
Length = 576
Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats.
Identities = 126/484 (26%), Positives = 213/484 (44%), Gaps = 67/484 (13%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
+ +I I + + ++QVP + DV V++ ADV + S R +Y+FG++ G+ +
Sbjct: 59 QQVVSPSDEIVISIGRGELVQVPGTMTDVFVANENVADVQIKSQRQLYVFGRSGGETTIY 118
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQR 159
G+ + + ++ + +I ++ L + ++ + V + +TV+L G V +D+
Sbjct: 119 ASDARGEVIFSANVRVGSNIGSIDQMLALAMPEAQVNVATMGTNTVLLTGTVAAPEDAAE 178
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ------- 212
A L FL + V+ L A QV L+V AEV R +++
Sbjct: 179 AERLVTAFLGEQA----------NVITRLKTATPLQVNLQVKFAEVSRSLVRAVSGNLTT 228
Query: 213 -----------------------------IGFQHSITGSSSGPSKSFAADF--------- 234
+G + GP
Sbjct: 229 FDASTGGFRGAVGTGRTLGAGEFDFRNGPLGVGSGVQNPVVGPFIDPTTGLPILDANGNP 288
Query: 235 ----GGKFVSEGGDFSVKGVLDRFSFETV--LHALERATAIRTLAEPTLTAISGQSASFT 288
G S ++ G+ F + + L ER I T+++P LTA+SG++A+F
Sbjct: 289 LTFTGPGIDSGTAGTTIAGLGRLFGLDALGALDLSERLGLITTISQPNLTALSGETATFL 348
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344
+GG+ G ++ ++GV L +TPTVLS GRI +R++ EVSE + +N
Sbjct: 349 AGGEFPIPIS-QGLGNVAIEYRNFGVSLAYTPTVLSNGRISIRVRPEVSELSSQGAVTLN 407
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+P+ +R+ +TTVEL SG + ++AGLL ++ Q + P L +PILG LFR+ F
Sbjct: 408 GFQVPALTIRRTETTVELGSGQSFMIAGLLSNNAQNALDKAPGLGDVPILGNLFRSRDFR 467
Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
R ETE+ I TP+LVKPV D++ P D Y ++ + F R N +
Sbjct: 468 RGETELVIVVTPYLVKPVNASDIALPTDGYHSANELEQFIGFRDNDGVSGERRPGPTAAE 527
Query: 465 YKGA 468
Sbjct: 528 PDAP 531
>gi|86147184|ref|ZP_01065500.1| general secretion pathway protein D [Vibrio sp. MED222]
gi|85835068|gb|EAQ53210.1| general secretion pathway protein D [Vibrio sp. MED222]
Length = 439
Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats.
Identities = 109/404 (26%), Positives = 178/404 (44%), Gaps = 38/404 (9%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
++ + + ++ V +S AD V + +FGKN+G A+ I
Sbjct: 20 AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAK 79
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G+++ N +L+ + +E + D+ + V + + VVL G+V Q+ +L
Sbjct: 80 GRELFNRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVG 139
Query: 166 TFLSQSGRNQYANSSSK----------------KVMNLLNIAGEDQVTLKVTIAEVRRDI 209
L ++ + S + V+N + I+ QV +K+TIAEV
Sbjct: 140 ELLGKTANSTSFQMSDEESDDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSF 199
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
++ G + G + G +V+ AL +
Sbjct: 200 MQDFGIKMGSNG------------------TPGIFVDQLTHFSASDIVSVISALGTDSVG 241
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+ LAEP L+ ISG+ ASF GG+ TV GAT+V ++GV L VL +I
Sbjct: 242 QVLAEPNLSVISGEKASFLVGGELPVVTVI--DGATNVEYKEFGVRLELLAKVLRDDKIK 299
Query: 330 LRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
L + EVS ++ + +P+ R R+A TTVEL G + VL GLL + ++ IP
Sbjct: 300 LALTPEVSSLDGSYSSDNFDLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPY 359
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
+ IPI+GALFR++ R +TE+ I AT LV+PV + P
Sbjct: 360 IGDIPIIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPT 403
>gi|218708107|ref|YP_002415728.1| putative bacterial type II secretion system protein D; rcpA, CpaC
[Vibrio splendidus LGP32]
gi|218321126|emb|CAV17076.1| putative bacterial type II secretion system protein D; rcpA, CpaC
[Vibrio splendidus LGP32]
Length = 435
Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats.
Identities = 109/404 (26%), Positives = 178/404 (44%), Gaps = 38/404 (9%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
++ + + ++ V +S AD V + +FGKN+G A+ I
Sbjct: 16 AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAK 75
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G+++ N +L+ + +E + D+ + V + + VVL G+V Q+ +L
Sbjct: 76 GRELFNRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVG 135
Query: 166 TFLSQSGRNQYANSSSK----------------KVMNLLNIAGEDQVTLKVTIAEVRRDI 209
L ++ + S + V+N + I+ QV +K+TIAEV
Sbjct: 136 ELLGKTANSTSFQMSDEESDDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSF 195
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
++ G + G + G +V+ AL +
Sbjct: 196 MQDFGIKMGSNG------------------TPGIFVDQLTHFSASDIVSVISALGTDSVG 237
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+ LAEP L+ ISG+ ASF GG+ TV GAT+V ++GV L VL +I
Sbjct: 238 QVLAEPNLSVISGEKASFLVGGELPVVTVI--DGATNVEYKEFGVRLELLAKVLRDDKIK 295
Query: 330 LRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
L + EVS ++ + +P+ R R+A TTVEL G + VL GLL + ++ IP
Sbjct: 296 LALTPEVSSLDGSYSSDNFDLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPY 355
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
+ IPI+GALFR++ R +TE+ I AT LV+PV + P
Sbjct: 356 IGDIPIIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPT 399
>gi|302391029|ref|YP_003826849.1| type II and III secretion system protein [Acetohalobium arabaticum
DSM 5501]
gi|302203106|gb|ADL11784.1| type II and III secretion system protein [Acetohalobium arabaticum
DSM 5501]
Length = 414
Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats.
Identities = 97/375 (25%), Positives = 169/375 (45%), Gaps = 27/375 (7%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+ +G K +L+V VD++ V+DP AD+V S + + GK+ G + L G +
Sbjct: 34 LQLGTGKSELLKV-VDLERAAVADPEVADIVTISQEELLINGKSEGTTTLHLWDQKGHR- 91
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
+ + + ++ A + ++ I ++V V + ++L G VR QR +++ F
Sbjct: 92 -SYQVEVYKEEARVIKQIKELIGTDTVKVAKVEENIILSGKVRDQTQLQRVKKIAGVF-- 148
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
+KV+N L + QV L + E+ + + +++GF S
Sbjct: 149 -----------GEKVINELQVTNSLQVLLAAQVFEIDKAVSEELGFDWYS-----TNSGG 192
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ + F + + T L AL + LA+P L SGQ ASF
Sbjct: 193 VESGTATLGETTTSRFGIGHYERLYQLRTKLKALIEDGKAKLLAKPKLVTKSGQKASFNV 252
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----N 344
GG+ T SS T V +YGV PTV G++ + +VS+ N
Sbjct: 253 GGEIPVVTADSSGEQTVV-WKNYGVQFEVEPTVTPTGKLETYLHPKVSQLDWANAVDYGN 311
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+G +P+ + + T V + G + + GLL+ + + IPLLS++PILG LF++ F
Sbjct: 312 SGQLPAIKSSEVKTQVVIKDGAALAIGGLLQQYRSEDIKRIPLLSQLPILGELFKSKSFR 371
Query: 405 REETEIFIAATPFLV 419
E++E+ I TP ++
Sbjct: 372 EEKSELIILVTPKII 386
>gi|294102189|ref|YP_003554047.1| type II and III secretion system protein [Aminobacterium
colombiense DSM 12261]
gi|293617169|gb|ADE57323.1| type II and III secretion system protein [Aminobacterium
colombiense DSM 12261]
Length = 384
Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats.
Identities = 102/423 (24%), Positives = 168/423 (39%), Gaps = 45/423 (10%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M L+R + ++ + + + + +L
Sbjct: 1 MACLKRKLWVFFAVVFLTVVVGALPVLAA-------------------TYHLDVGDSAVL 41
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ +V+ + V +P D + + L GK G A +I+ G M + + +
Sbjct: 42 KY-QNVKRMSVGNPDVLDAIPLDNNQVLLTGKVEGGAALIVWDAAGMHMEKILVHPSIEA 100
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
E L+ + NI V + VVL G V+T +D RAV ++ F
Sbjct: 101 PSWE--LKELLQAENIDVTVRGGAVVLEGKVKTPRDRLRAVAIAGAF------------- 145
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
+KV+NLL + Q+ L+ + EV++ +G G +F F +
Sbjct: 146 GEKVINLLEVDSAPQIKLRAVVMEVKKKDGDALG-----MKRLEGQEGTFWGIFDLTPDT 200
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
KG ++AL + L+ P LT +SG+ AS GG+
Sbjct: 201 GHMLDYTKGAHYSAKINAWINALVENKEAKILSRPYLTTLSGEEASLNVGGEIPVPVGVD 260
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKA 356
+ + YGV++ FTP + G I L + EVSE I +P+ R RK
Sbjct: 261 NN-EIKIEWKPYGVIMKFTPELDGIGEIWLTFEAEVSEIDWENAIETQGIKIPAIRTRKI 319
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
V L ++V+ GLL + +L + IPLL IPI+G LF++ F +ETE+ I TP
Sbjct: 320 ANKVRLGHNESLVVGGLLDNKQSKLVKKIPLLGDIPIIGELFKSREFTNDETELVITVTP 379
Query: 417 FLV 419
+V
Sbjct: 380 EVV 382
>gi|239814526|ref|YP_002943436.1| type II and III secretion system protein [Variovorax paradoxus
S110]
gi|239801103|gb|ACS18170.1| type II and III secretion system protein [Variovorax paradoxus
S110]
Length = 504
Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats.
Identities = 123/453 (27%), Positives = 204/453 (45%), Gaps = 59/453 (13%)
Query: 54 LNKVIILQVPVDVQDVLVSD----------------------------PTKADVVV--HS 83
L K +++ + V ++VS ADV V S
Sbjct: 68 LGKSVVIPLKARVARIVVSGQPPSRAPAAAPAAAGQPAPAPATAANAGDGIADVDVTLLS 127
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVS 142
P ++ G+ G NV+L DG D+++ D L+ L + + N IRV
Sbjct: 128 PTDLFFRGRQAGSMNVVLQSVDGTC-YIKDVIVTIDPGALQSKLAELMPEENHIRVRSAE 186
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
++VL G + + L+ + + KKV+NLL + QV L+V I
Sbjct: 187 KSIVLTGEISDALKLDDVMSLAMAY----------GADGKKVVNLLRVTAPQQVMLEVKI 236
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
AEV + +L ++G + + S +G + F+S GG + R S +
Sbjct: 237 AEVSKTLLDRLGARVGL--SRTGGGGRDSYSLISSFLSGGGGLLEAIRIGRTSVG--IDG 292
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLHF 318
+ +R LAEP + AISGQ ASF SGG+ S ++ ++G+ + F
Sbjct: 293 QKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSAAGGGGTNITLEEKEFGIGVKF 352
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVL 370
TPTVL+ GR+ L++ +EVS+ + +PS VR+ADTTV+L G + V+
Sbjct: 353 TPTVLNGGRVNLKMISEVSDLSQTGSPFTTVTGVTAVLPSLTVRRADTTVQLNDGQSFVI 412
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGL+K ++ + + P L ++P++GALFR++ F ++TE+ TP LV+P+A P
Sbjct: 413 AGLIKSNVTESIKRYPGLGEVPVMGALFRSTEFQNDQTELMFVITPRLVRPLA-EAPRVP 471
Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
D++ V A+ + + A + Q
Sbjct: 472 TDNHVVPSRAEVYLNGSLESATPAPVAPAGQPQ 504
>gi|171921001|gb|ACB59184.1| RcpA [Actinobacillus suis ATCC 33415]
Length = 460
Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats.
Identities = 92/424 (21%), Positives = 176/424 (41%), Gaps = 25/424 (5%)
Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
+ K ++ + +++ + V VS P AD + T L+ K G+A +
Sbjct: 20 AFSHTAAAKTFTLEQGQSQLIKTDAKIDTVFVSSPDIADYEILDDNTFMLYAKAEGRAEI 79
Query: 100 ILIGHDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
+ DG + +IA ++ +SN+ V+ + V+ G + +
Sbjct: 80 VAFDVDGTPLTEDFINVNNAINNIAATNEQIQTRFPNSNLSVKKIGKAYVIEGKAKNAAE 139
Query: 157 SQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQVTLKVTIA 203
S+ + L + A + ++N N Q+ +K+T+A
Sbjct: 140 SEEINRIVGESLGAGKKVVEAKVEGSEDAIPFLDKYQYEGIINNANEEDATQINVKLTVA 199
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
EV + +IG + + + AA GG S G +++ + +L AL
Sbjct: 200 EVNKTFSDEIGINWNNLSGNFFRNLGSAAINGGFGKSGGQ----LALVNSNNLNVLLSAL 255
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
+ + LAEP ++ +SG++A GG+ + + G +V ++G+ L V
Sbjct: 256 DNQNNGKILAEPNISMLSGETADILVGGEVPFVQ-RNRDGELNVLYKEFGIKLAVGAKVQ 314
Query: 324 SPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
RI L + VS ++ +P + R++ +T E+ +G + +++GLL +
Sbjct: 315 KSDRIRLLLSQSVSTIAGNYEIDDNHIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEG 374
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
+ +P L +PILGA FR++ +RE E+ + AT LVKPV + P + +
Sbjct: 375 IKKVPFLGDVPILGAFFRSANSSRESKELVVVATVNLVKPVDGSQILYPT--FENTGTME 432
Query: 442 AFFF 445
FF
Sbjct: 433 RFFN 436
>gi|320158383|ref|YP_004190761.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus MO6-24/O]
gi|319933695|gb|ADV88558.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus MO6-24/O]
Length = 441
Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats.
Identities = 104/448 (23%), Positives = 187/448 (41%), Gaps = 43/448 (9%)
Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
+ + + + +++ + + + V V DP AD + + ++G G +V
Sbjct: 16 ASLSVNSNELMNLNQGSAKTISLKRQISTVFVGDPEIADYKIIDETKVVVYGVGQGATSV 75
Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
I+ G ++ N ++++ + + ++ TL D +I + V + VVL G+V + + +
Sbjct: 76 IVYDRAGNELYNAEVVVNKSLRLVKQTLIARFPDESINITNVGEQVVLDGVVSSDEIKTQ 135
Query: 160 AVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
L ++ + A ++N L + +Q+ +K+T+
Sbjct: 136 IYRTVGEMLKKNSTRDTFTLKDANGDEVDSLDYTATYIYDNIINNLKVLTTEQINVKLTV 195
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
AEV L ++G +S +G G + V+ A
Sbjct: 196 AEVSSSFLSELGVSYSDSGQ------------------AGRFVNKLLDFTAQDIVAVITA 237
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
R LAEP L+ ISG++ASF GG+ +++ +YGV L V
Sbjct: 238 SGDDQIGRVLAEPNLSVISGETASFLVGGEIPIAIRDEDG--ITISYKEYGVKLSMVAKV 295
Query: 323 LSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
I L + EVS ++P+ R RKA TTV+L G + VLAGLL +
Sbjct: 296 TDSENIRLSLLPEVSSIDEENKTANGLINVPALRTRKAQTTVQLKDGQSFVLAGLLTSEE 355
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
++ IP+L IPILGALF +++ N+ +TE+ I AT LV PV D+ P +
Sbjct: 356 RESLSKIPVLGDIPILGALFSHTKSNQTKTELIIVATVNLVDPVKAEDIKLP--SFRRTS 413
Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYK 466
D + ++ + P+ + +
Sbjct: 414 DIERLLRIDLSSMNEPELEDTLNKGGFN 441
>gi|296121060|ref|YP_003628838.1| type II and III secretion system protein [Planctomyces limnophilus
DSM 3776]
gi|296013400|gb|ADG66639.1| type II and III secretion system protein [Planctomyces limnophilus
DSM 3776]
Length = 622
Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats.
Identities = 111/495 (22%), Positives = 195/495 (39%), Gaps = 41/495 (8%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAK---LPPIKEANAAVINISDVEIGKGKKISIGLNKVI 58
R+ + + F S P + + + NA V K+ I
Sbjct: 9 RWRAALVWGLCLCQSFLSYPGLTSSSGMAFAQNGNAPVAGEVVQITASRTKLEIAERFAR 68
Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
++Q P + V DP V + + + G G +++ +G + +D+++
Sbjct: 69 VVQFPRKILRVDGFDPAVLSVTALAHDQLRVQGITEGITTMVITDENGA-ITTIDVMVAG 127
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
D L+ L R ++++ V + D V+L G V Q V++++ +
Sbjct: 128 DARLLQAVLSREYPNTSVTVTKLKDNVLLRGWVVEPQQITEIVDIAKLYYP--------- 178
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------ 232
V+N + + G QV L+ + EV+R L+ +G + G + S + A
Sbjct: 179 ----NVLNQMKMGGPQQVQLRCKVMEVQRSKLRSLGLNFTYLGRNVAFSSTPGAISPLDA 234
Query: 233 ------DFGGKFVSEGG----DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G +++ G S+ V D F+F +L AL ++ AEPT+ SG
Sbjct: 235 FTVPIGGPPGVGLAQSGFRNATMSLGIVGDDFAFGGLLEALREEGLLKIQAEPTIVTRSG 294
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
+ A SGG+ V G ++ ++GV L P +LSP R+ I EVSE
Sbjct: 295 EPAKIVSGGEFPIP-VPQGLGTIAIEWREFGVRLESVPMILSPNRLKQTIIAEVSERDLT 353
Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
+ +N+ +P R +T VE+ G T+ + GL+ IP L ++P +GA F
Sbjct: 354 NAVTLNSTTVPGLTKRTVETQVEMNFGQTLAIGGLISSRKTAQTSKIPFLGELPYVGAAF 413
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKI-YGPK 455
R ++ ETE+ + TP V + + P +V D + F + YG
Sbjct: 414 RRVNYDEAETELLVLITPEFVSAMDPAQVPDRLPGTASAVPTDRELFGQGIIEVPNYGDP 473
Query: 456 EASEVEGQNYKGAIG 470
+ G
Sbjct: 474 CPNCGPRGGSSTPSG 488
>gi|33152386|ref|NP_873739.1| rough colony protein A [Haemophilus ducreyi 35000HP]
gi|21326707|gb|AAL92467.1| RcpA [Haemophilus ducreyi]
gi|33148609|gb|AAP96128.1| rough colony protein A [Haemophilus ducreyi 35000HP]
Length = 456
Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats.
Identities = 84/418 (20%), Positives = 183/418 (43%), Gaps = 24/418 (5%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
K ++ + +++ + + VS P AD + + L+ K G+ +++
Sbjct: 23 PSLAKTFNLEQGQTKLIKTKTKIDTIFVSSPEVADYQILDDNSFMLYAKGEGKTEIVVFD 82
Query: 104 HDGKQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+G + + + +I+ ++ +SN+ V+ + V+ G + +++
Sbjct: 83 FEGNALTEDVVSVNNMINNISETNQQIQTRFPNSNLTVKKIGKAYVVEGKAKNEAETEDV 142
Query: 161 VELSETFLSQSGRNQYANSSSKKV-----------MNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + L N + ++V +N + Q+ +K+T+AEV +
Sbjct: 143 IRVVGEALGAGKNVTSKNLAGEQVPFLNNYQYEGIINNTTASDATQINVKLTVAEVNKKF 202
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
+IG S + + + A GG G + ++++ + + ++ AL+ +
Sbjct: 203 SDEIGIHWSNLSGNFFKNLTNLAIQGG----FGPEGGKLALVNQDNLQMLVTALDNQSNG 258
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+ LAEP ++ +SG++A GG+ + G+ +V ++G+ L + RI
Sbjct: 259 KILAEPNISMLSGETADILVGGEVPI--IERKDGSPTVKYKEFGIKLAVGAKLQKNDRIR 316
Query: 330 LRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
L + EVS ++ +P + R++ +T E+ +G + +++GLL + + +P
Sbjct: 317 LALSQEVSTIAGSFKLDQDSLPIFNTRRSKSTFEVGNGESFIVSGLLNKEDIESITKVPG 376
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
L IPILGA FR++ +R E+ + AT LVKPV ++ P + + FF
Sbjct: 377 LGDIPILGAFFRSANTSRGSKELVVIATVNLVKPVDGSEILYPT--FENTGTMERFFN 432
>gi|15602717|ref|NP_245789.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70]
gi|12721161|gb|AAK02936.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 470
Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats.
Identities = 95/424 (22%), Positives = 174/424 (41%), Gaps = 30/424 (7%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
K ++ +++ + + VS P+ AD + + ++ K G+A V G DG
Sbjct: 28 SKTFNLEQGGTKLVRTDEKIDTIFVSSPSVADYEILDDNSFIIYAKEEGRAEVTAFGQDG 87
Query: 107 KQMLNLDILIERDIAHLE------MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
K + I + I+++ ++ +SN+ V+ V V+ G RT ++S+ A
Sbjct: 88 KPLTTDFINVNPLISNINDISDTNRQIKARFPNSNLSVKKVGKAYVIEGKARTQEESEEA 147
Query: 161 VELSETFLSQSGRNQYANSSS----------------KKVMNLLNIAGEDQVTLKVTIAE 204
+ L S + + + V+N ++A Q+ +K+++ E
Sbjct: 148 HRIVGEALGNSKKVTETSFNRSEGVKEYIPFLDKYQFDGVINNASVADSTQINVKLSVVE 207
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
V + + + +G S G ++ ++AL
Sbjct: 208 VNKKLTEALGINWGRVVGVH--SGPLLGGSVSLSGGFSGSGGSTLNINATGVSAFINALN 265
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ LAEP+++ +SG++A GG+ + AT + ++GV L V
Sbjct: 266 NQDNGKILAEPSISLLSGETADILVGGELPFAQKDKEGSATII-YKEFGVKLIVGAKVQK 324
Query: 325 PGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
RI L + VS N G +P + R+A + E+ G + ++ GL +
Sbjct: 325 NKRIRLALDQSVSTIAGSYAYDNVGTVPYFNTRRAKSIFEVADGESFIIGGLFSSQDAEG 384
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
+PLL IPILG+ FRN+R +RE+ E+ I AT +VKPV D+ P + +
Sbjct: 385 INKVPLLGDIPILGSFFRNARTDREDKELVIVATVNVVKPVHESDIVYPT--FEQTGTME 442
Query: 442 AFFF 445
FF
Sbjct: 443 RFFN 446
>gi|328470518|gb|EGF41429.1| rough colony protein RcpA [Vibrio parahaemolyticus 10329]
Length = 447
Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats.
Identities = 111/452 (24%), Positives = 189/452 (41%), Gaps = 38/452 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
V + + G+ +S+ + V ++ V V+D AD V + + ++G G
Sbjct: 13 VALLLPASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRG 72
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
++I G ++ N ++++ + + L+ T+ D +I++ + + +V+ G+V + +
Sbjct: 73 ATSIIAYDRAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEE 132
Query: 156 DSQRAVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTL 198
+ L +S + + A + ++N L + DQ+ +
Sbjct: 133 IKDKVYRHVGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINV 192
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
K+T+AEV L ++G + A G G +
Sbjct: 193 KLTVAEVSSSFLTELGVSY-------------AETNGKSIGGAGQFVNKILDFTAEDIVA 239
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
V+ A + + LAEP L+ ISG+SASF GG+ SVT +YGV L
Sbjct: 240 VISASGNDSIGQVLAEPNLSVISGESASFLVGGEIPITV--RDNDGISVTYKEYGVKLSM 297
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLL 374
V I L + EVS +PS R RKA TTV+L G + VLAGLL
Sbjct: 298 VAKVTDSENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLL 357
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
+ Q+ IP L IPILGALF + R +TE+ I AT LV PV D+ P +
Sbjct: 358 TSEEQESLAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP--KF 415
Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
D + ++K+ + + ++ +
Sbjct: 416 KRTSDLERLLKLDLSKVDDEELENTIKAGGFN 447
>gi|327538064|gb|EGF24754.1| bacterial type II/III secretion system protein [Rhodopirellula
baltica WH47]
Length = 758
Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats.
Identities = 109/496 (21%), Positives = 186/496 (37%), Gaps = 62/496 (12%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
+ PP A + EI +S+ L + IL++ + V D
Sbjct: 164 GLPAELILPPPSDAAKQRASRFVESEIDPEIPLSLVLGRPKILRLADTPTRIYVPDEDTI 223
Query: 78 DVVVH---SPRTMYLFGKNVGQANVILIGHD-----GKQMLNLDILIER------DIAHL 123
+ S R + + G G ++L D G+ +++ + + + L
Sbjct: 224 RTEIIDQESGRELAVTGVQPGTTTLMLWFKDSGAPSGQSVVSYLVRVYEDPILAKPVGDL 283
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-------------------- 163
E L +S + ++ ++D +++ G + + +++
Sbjct: 284 ETELNEKFPNSFVELDEIADRLIVRGQAPDAIEMSQILQILTGARGVRAGLTRPANPVTV 343
Query: 164 --SETFLSQSGRNQYANSSSKK-------------VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ F+ +++++ ++N + I GE QV LKVT+AEV R
Sbjct: 344 AAAYDFVGAVDPLTSEEAAAERRRNLDPIALSQAGIINQMKIVGEQQVMLKVTVAEVNRS 403
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
+ IG + + G + + ++ LD + AL R
Sbjct: 404 AARSIGLNFGVDNDN-GLTVFQSLTGNLANTQNQSGANILASLDMGQVRLAIEALRRLNL 462
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSP 325
RTLAEP L A++GQ A F +GGQ +SS V+ +GV L FTP +
Sbjct: 463 SRTLAEPNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQDR 522
Query: 326 GRIGLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
I L++ EVS + + R TTV+L SG TI +AGLL+ +
Sbjct: 523 DVIRLQMNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQTN 582
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSV 436
+ P +PI+GA +R + E E+ I TP LV PV + P
Sbjct: 583 YGASSDRTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDVYE 642
Query: 437 EDDAKAFFFNRVNKIY 452
D + F NR+
Sbjct: 643 PSDIEFFIANRLESRR 658
>gi|238789148|ref|ZP_04632936.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC
33641]
gi|238722680|gb|EEQ14332.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC
33641]
Length = 415
Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats.
Identities = 111/441 (25%), Positives = 197/441 (44%), Gaps = 34/441 (7%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ + K + + + I+ ++ V VS AD + ++ ++ KN G A
Sbjct: 1 MITAQGANAKPVYLSAGESYIINTQDEINTVFVSAAAIADYELIGKNSIIVYAKNEGVAE 60
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
L HD K + +L+ I + ++ +SNI + + + +L G+V + +
Sbjct: 61 FTLFNHDHKAITKSVVLVNNIIPSVHRRIQAEYPESNIDINKIGSSYILTGLVESEEVRD 120
Query: 159 RAVELSETFLSQSGRNQY----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
V + + N N++ ++N + ++ +QV +K+TIAEV +D + IG
Sbjct: 121 TVVNIIGEAIGSKRINNDRHPVGNTNHTNIINKIKLSQSNQVNVKLTIAEVTKDFTENIG 180
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
S G S G + F + T++HA+ R LAE
Sbjct: 181 INWSTIGESVGSFQLF-------------------KFNAKGISTLVHAINDNAIARVLAE 221
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P L+ +SG+ ASF GG+ + + ++V+ ++G+ L+ V RI + +
Sbjct: 222 PNLSVLSGEDASFLVGGEIPIVNTTQNG--SAVSYKEFGIKLNIGAKVNDKKRIRIILNE 279
Query: 335 EVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
EVS PS R RKA TT+EL G + +L GL+ + ++ + IPL+ I
Sbjct: 280 EVSSIGKTFNINGGDSYPSIRTRKAATTLELGDGESFILGGLISRNERESLKKIPLMGDI 339
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
P+LGA FRN++ + +TE+ + AT LV PVA +++ PD + + FF N
Sbjct: 340 PLLGAFFRNAQTEQSQTELVVIATVNLVNPVAEKEVELPD--FMQTSTLERFF----NFT 393
Query: 452 YGPKEASEVEGQNYKGAIGFI 472
+ + E + + GFI
Sbjct: 394 HIMEIKREKAARAFLRKGGFI 414
>gi|225872754|ref|YP_002754211.1| type II/III secretion system protein [Acidobacterium capsulatum
ATCC 51196]
gi|225792181|gb|ACO32271.1| type II/III secretion system protein [Acidobacterium capsulatum
ATCC 51196]
Length = 480
Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats.
Identities = 106/481 (22%), Positives = 187/481 (38%), Gaps = 32/481 (6%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVII 59
+ M++ L + P P A + + + + +
Sbjct: 7 TRRNLLHRAMTVALIAVLPLAGARPVNAAAAAETAQGPVDFVQLNNSNFMLHLLVGRSMF 66
Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
L ++ V VSDP + SP + + K G +++++ G+ + + D
Sbjct: 67 LDTATPLKRVYVSDPAVLNSFTASPHQVLITAKAPGISSLVVWDESGRS-NVYTVSSDID 125
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
++ L+ + I + D V L G V T ++ A +L++ + +
Sbjct: 126 VSGLQAAINAAFPHDMIHASALQDRVTLTGEVATESEAAAAEKLAQGYAKTVENSIDLAP 185
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---------- 229
QV LKV AEV R +Q+GF G ++ + +
Sbjct: 186 Q-----------RVQQVQLKVRFAEVDRTRAQQLGFNFISAGRNAAVTGTQQFPSFSNYT 234
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ ++ + + + ALE ++ LAEPT+T+ISG ASF S
Sbjct: 235 LGGNSTANPITVSNPLDLLLYSSDLNLGATIQALENDQVLQILAEPTITSISGVEASFLS 294
Query: 290 GGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IG 342
GGQ + V T + +V YGV L FTP V G I L++ EVS +
Sbjct: 295 GGQFPFPVVQGGTTGFTSVTVQFRPYGVKLDFTPYVNPDGTIRLKVAPEVSALDYTNEVQ 354
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
++ +P+ R+A T V L +G + ++GLL + E +P +S+IPILG LFR+ +
Sbjct: 355 ISGYSIPAIDTRRAKTEVVLKNGQSFAISGLLDHRLTNDYERMPGISRIPILGQLFRSYQ 414
Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
T++ + TP +V P+ ++ + F R+ K K+
Sbjct: 415 KQASTTDLIVIVTPTIVDPLHEPTVAPKLPALAKPYLDNKLFDQRLKKHPRHKKQKGNPP 474
Query: 463 Q 463
Sbjct: 475 P 475
>gi|28900576|ref|NP_800231.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633]
gi|153836379|ref|ZP_01989046.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810]
gi|260877521|ref|ZP_05889876.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034]
gi|260901740|ref|ZP_05910135.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037]
gi|308095456|ref|ZP_05906034.2| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466]
gi|308125917|ref|ZP_05777993.2| rough colony protein RcpA [Vibrio parahaemolyticus K5030]
gi|28808956|dbj|BAC62064.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633]
gi|149750281|gb|EDM61026.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810]
gi|308087133|gb|EFO36828.1| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466]
gi|308090527|gb|EFO40222.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034]
gi|308108872|gb|EFO46412.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037]
gi|308114419|gb|EFO51959.1| rough colony protein RcpA [Vibrio parahaemolyticus K5030]
Length = 447
Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats.
Identities = 111/452 (24%), Positives = 189/452 (41%), Gaps = 38/452 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
V + + G+ +S+ + V ++ V V+D AD V + + ++G G
Sbjct: 13 VALLLPASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRG 72
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
++I G ++ N ++++ + + L+ T+ D +I++ + + +V+ G+V + +
Sbjct: 73 ATSIIAYDRAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEE 132
Query: 156 DSQRAVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTL 198
+ L +S + + A + ++N L + DQ+ +
Sbjct: 133 IKDKVYRHVGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINV 192
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
K+T+AEV L ++G + A G G +
Sbjct: 193 KLTVAEVSSSFLTELGVSY-------------AETNGKSIGGAGQFVNKILDFTAEDIVA 239
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
V+ A + + LAEP L+ ISG+SASF GG+ SVT +YGV L
Sbjct: 240 VISASGNDSIGQVLAEPNLSVISGESASFLVGGEIPITV--RDNDGISVTYKEYGVKLSM 297
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLL 374
V I L + EVS +PS R RKA TTV+L G + VLAGLL
Sbjct: 298 VAKVTDSENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLL 357
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
+ Q+ IP L IPILGALF + R +TE+ I AT LV PV D+ P +
Sbjct: 358 TSEEQESLAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP--KF 415
Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
D + ++K+ + + ++ +
Sbjct: 416 ERTSDLERLLKLDLSKVDDEELENTIKAGGFN 447
>gi|299532592|ref|ZP_07045981.1| type II and III secretion system protein [Comamonas testosteroni
S44]
gi|298719395|gb|EFI60363.1| type II and III secretion system protein [Comamonas testosteroni
S44]
Length = 520
Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats.
Identities = 125/495 (25%), Positives = 208/495 (42%), Gaps = 50/495 (10%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
L + + + P + + I ++ L K +++ +
Sbjct: 3 LASSVPVLAQSAGTPAQPGPVAAAAPAAPRTTLPARNCTAIHTEDPTTVTLGKSVVIPLN 62
Query: 64 VDVQDVLVS--DPTK-------------------ADVVVHSPRTMYLFGKNVGQANVILI 102
+ +LVS P +V + SPR ++ G+ G NVIL
Sbjct: 63 SPMARILVSGQTPGVGQAAANGQPQMQVQNGMGDIEVQLLSPRDLFFRGRKSGSMNVILQ 122
Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
G D+++ D L+ L + + IRV+ + +VL G + V
Sbjct: 123 NAQGAC-FIKDVIVTMDPGPLQTKLSELMPEERGIRVQGADNALVLSGEISNPLRLDDVV 181
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
L+ + S SKK++NLL QV L+V IAEV + +L ++G S+ G
Sbjct: 182 TLAGAY-----------SDSKKIVNLLRTTSPHQVMLEVKIAEVSKTLLDKLGA--SLAG 228
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ F+S GG + + S + + +R LAEP + AIS
Sbjct: 229 QRITSNGMNTFSIASNFLSGGGGLLSAMRIGKGSIS--IDGQKDDGLVRILAEPNIMAIS 286
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
GQ ASF SGG+ S+T V ++G+ + FTPTVL R+ L++ +EVS+
Sbjct: 287 GQQASFLSGGKIFIPVSQSNTNGVPVMTLEEKEFGIGVKFTPTVLGSSRVNLKLVSEVSD 346
Query: 339 PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ +PS VR+ADTTV+L G ++V+AGL+K++I + + P L +
Sbjct: 347 LSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDGQSLVIAGLIKNNITEAVKRFPGLGE 406
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
IP+LGAL R++ F ++TE+ TP LV+ +A P D++ A+ + +
Sbjct: 407 IPVLGALARSTEFQTDQTELMFIITPRLVQALA-EAPRVPTDNHVPPSRAEVYLNGALES 465
Query: 451 IYGPKEASEVEGQNY 465
V
Sbjct: 466 SKPASAVKTVPAATM 480
>gi|317491683|ref|ZP_07950118.1| type II and III secretion system protein [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316920117|gb|EFV41441.1| type II and III secretion system protein [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 467
Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats.
Identities = 99/424 (23%), Positives = 193/424 (45%), Gaps = 42/424 (9%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ +++ + + ++QV ++ + +S P AD + R + ++ K+ G+ ++I +
Sbjct: 38 RAQELYMDAGESQVIQVNGNIDTIFISAPKVADYEIIGERGVMVYAKSEGKTDLIAFDKN 97
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G Q++ ++++ ++ L+ + + DS I ++ + T +L G V T +D R ++
Sbjct: 98 GDQLVKTTLVVDPILSSLQKKVSSLVPDSQITLQKMGKTYILSGSVATEEDRDRVYQIVG 157
Query: 166 TFLSQSGRNQYANSSS---------------------KKVMNLLNIAGEDQVTLKVTIAE 204
+ + ++ ++V+N L + +QV +K+++ E
Sbjct: 158 EGVGATRTTNKKEVANTNGGSGGNGENSNSWLDEVVYQEVINQLKLPMTNQVNVKLSVVE 217
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
V + +G G + + + +++HA+
Sbjct: 218 VTKTFSDNVGIDWG--------------TISGSGGNITPGTFRFVKFNADTLSSLVHAIS 263
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ R LAEP L+ +SG+SA F GG+ V+SS ++V D+G+ L+ V S
Sbjct: 264 NDSVARVLAEPNLSVLSGESAEFLVGGEVPV--VTSSANGSNVQYKDFGIKLNVGAKVSS 321
Query: 325 PGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
RI + + EVS P+++ R+A TTVEL G + +L GL+ ++ ++
Sbjct: 322 NKRIRVTLGEEVSNVDSTYSTNAGDSFPAFQTRRAKTTVELADGESFLLGGLISNNEREE 381
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
+P + +PILGALFRN++ R E+ + AT LVKPV MRD+ PD +
Sbjct: 382 LSRLPFIGDVPILGALFRNAKTERSRGELVVVATVNLVKPVTMRDIVMPD--FQRTSTLS 439
Query: 442 AFFF 445
F
Sbjct: 440 RFLN 443
>gi|149188863|ref|ZP_01867153.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
gi|148837283|gb|EDL54230.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
Length = 456
Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats.
Identities = 113/448 (25%), Positives = 197/448 (43%), Gaps = 52/448 (11%)
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
SI LN +Q+ + + V +S+P AD + + T+ +F VGQ+ +I+ G + +L
Sbjct: 34 SITLNDGQHIQLKMPIGKVFISNPAIADYKIINDNTLVVFANGVGQSRLIVYGTNNDVLL 93
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
+ I+++ D++ + L+ D+ ++V+ V + V + G+V + Q L T L +
Sbjct: 94 SDRIIVDLDLSEVRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEQTRDDIYRLVATLLGR 153
Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
++ + + ++ + +A QV +K+++A+V
Sbjct: 154 EKIKKWDKTEKLEFKSEHMERKEPESMVFARNMTWEGILERIEVATTQQVNVKISVAQVT 213
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
K +G S GSS G V D + T++ AL
Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+ LAEP LT +SG+SASF GG+ +S+ ++T ++G+ L T VLS
Sbjct: 255 SIAEVLAEPNLTVLSGESASFLVGGEVPVIVSTSNN--VNITFKEFGIKLDLTAKVLSQD 312
Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I +++ EVSE + +P R+A TTVEL G + +L GL+ + +
Sbjct: 313 KIRMQLSPEVSEVESYVEAAGVKVPQLASRRAMTTVELADGDSFILGGLMSSSDLEKMQK 372
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
IP + +P+LGA FR + R+ TE+ I AT LV+P+ +D+ P + +
Sbjct: 373 IPFIGDVPVLGAAFRKATTQRKRTELIIVATVNLVEPMKPKDIQLP--YIKKTSTLSRWL 430
Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
G AS GFI
Sbjct: 431 N---VDADGKPVASSDATIRLLSQGGFI 455
>gi|52425834|ref|YP_088971.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
gi|52307886|gb|AAU38386.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
Length = 458
Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats.
Identities = 89/423 (21%), Positives = 173/423 (40%), Gaps = 30/423 (7%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
K + + +++ + + VS AD + + ++GK G +V +G
Sbjct: 18 AKPMYLEQGTSKYIELDKKIDTIFVSSSEVADYEIVDDYSFMVYGKQEGTTDVTAFDANG 77
Query: 107 KQMLNLDILIERDIAHL---EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ + + I ++ ++ +SN++V+ + V+ G T +S+ +
Sbjct: 78 NILYTDTLNVNALINNIVDTNKQIKARFPNSNLQVKKLGKAYVIEGKANTQHESEEVNRI 137
Query: 164 SETFLSQSGRNQYANSSSKK-----------------VMNLLNIAGEDQVTLKVTIAEVR 206
+ + + V+N NI Q+ +K+T+AEV
Sbjct: 138 VGEAIGVAPKVTETTLKRGNGMSDEKIPFLDKYEYNGVINNTNIDKTKQINVKLTVAEVN 197
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADF-GGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
++ +G + S + + A+ G F G ++ ++ + A+
Sbjct: 198 KNFSDSLGIKWEHLSGSVLENWTSGANGYSGGFDGTTGSIAL---INANRLSAFITAVNN 254
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
A + LAEP ++ +SG++A GG+ + S G TS+ D+GV L V
Sbjct: 255 ANNGKILAEPNISMLSGETADILVGGEVPFAQ-RDSDGNTSIIYKDFGVKLMVGAKVQKN 313
Query: 326 GRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
++ + + EVS + GD+P ++ R+A +T E+ +G + ++ GLL +
Sbjct: 314 DQVRIVLAQEVSTLAGNYTYTSVGDIPYFQTRRAKSTFEVGNGESFIIGGLLSSSDLEGV 373
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
+PL IPILGA FR+ +RE E+ + AT LV P + P + +
Sbjct: 374 SKVPLFGDIPILGAFFRSVTTSRETKELVVVATVNLVTPNDAEKVIYP--SFEQTGTLER 431
Query: 443 FFF 445
FF
Sbjct: 432 FFN 434
>gi|37676253|ref|NP_936649.1| rough colony protein RcpA [Vibrio vulnificus YJ016]
gi|326424174|ref|NP_762071.2| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus
CMCP6]
gi|37200794|dbj|BAC96619.1| rough colony protein RcpA [Vibrio vulnificus YJ016]
gi|319999557|gb|AAO07061.2| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus CMCP6]
Length = 441
Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats.
Identities = 108/453 (23%), Positives = 189/453 (41%), Gaps = 43/453 (9%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
I + + + + +++ + + + V V P AD + + ++G +
Sbjct: 11 TTIGVVSLSVNSNELMNLNQGSAKTISLKRQISTVFVGAPEIADYKIIDETKVVVYGVGL 70
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
G +VI+ G ++ N ++++ + + ++ TL D +I + V + VVL G+V +
Sbjct: 71 GATSVIVYDRAGNELYNAEVVVNKSLRLVKQTLIARFPDESINITNVGEQVVLDGVVSSE 130
Query: 155 QDSQRAVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVT 197
+ + L +S + A ++N L + +Q+
Sbjct: 131 EVKTQIYRTVGEMLKKSVTRNTLTLQDTSGGQVDSLDYTATYIYDNIINNLKVLTTEQIN 190
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
+K+T+AEV L ++G +S +G G +
Sbjct: 191 VKLTVAEVSSSFLSELGVSYSDSGQ------------------AGRFVNKLLDFTAQDIV 232
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
V+ A R LAEP L+ ISG++ASF GG+ S SV+ +YGV L
Sbjct: 233 AVITASGDDQIGRVLAEPNLSVISGETASFLVGGELPIAIRDESG--ISVSYKEYGVKLS 290
Query: 318 FTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
V I L + EVS ++P+ R RKA TTV+L G + VLAGL
Sbjct: 291 MVAKVTDSENIRLSLLPEVSSIDEENKTANGLINVPALRTRKAQTTVQLKDGQSFVLAGL 350
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
L + ++ IP+L IPILGALF +++ N+ +TE+ I AT LV PV D+ P
Sbjct: 351 LTSEERESLSKIPVLGDIPILGALFSHTKSNQTKTELIIVATVNLVDPVKAEDIKLP--S 408
Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+ D + ++ + P+ + +
Sbjct: 409 FRRTSDIERLLRIDLSSMNEPELEDTLNKGGFN 441
>gi|152981036|ref|YP_001355006.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille]
gi|151281113|gb|ABR89523.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille]
Length = 429
Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats.
Identities = 100/424 (23%), Positives = 182/424 (42%), Gaps = 36/424 (8%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKN 93
S + + +++ + + + L+ P D++ + V+DP AD+++ P ++ L GK
Sbjct: 14 TSFPALAEEMNLTVRVREQLQLKTPADLERIAVADPEVADILIIKGSNKRPGSIMLVGKK 73
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G +V +G + ++ L+ + + +++ SD+ L G +
Sbjct: 74 PGSTSVTAWQRNG-PTKVWQV-------SVQSALQGLLPEEGAELQINSDSASLRGQSPS 125
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ V + + +K ++ +A V + V I E R++LK+
Sbjct: 126 LLSHANTVAAGTQAVGK-----------EKFLDTSTVATSGMVQIDVQIVEFSRNVLKEA 174
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSE--GGDFSVKGVLDRFSFETVLHALERATAIRT 271
GF + +F S +L S + +E+ R
Sbjct: 175 GFDFIFNQNRGATFSFGLNNFSTILSSTVQTPVSQAFNLLGSTSVNARVKLIEQNGLARV 234
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LA P+L A+SGQSASF +GG+ G T++ +G+ L TPTVLS RI L+
Sbjct: 235 LARPSLIALSGQSASFLAGGELPVPQS-GGLGTTTIIYKAFGIGLTVTPTVLSANRIALK 293
Query: 332 IQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ E S+ +P+ R+ +TT+EL G + V+ GL+ + +P
Sbjct: 294 VAPEASDLDYANAIVTNNMMIPAISTRRTETTLELGDGESFVIGGLVSRTTKSNVNKVPF 353
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDD----HYSVEDDAKA 442
L +PILG FR+ +++++E E+ I ATP LVKP+A L P D + + +
Sbjct: 354 LGDLPILGPFFRSMQYSQDEKELVIIATPHLVKPIAKGAQLPLPGDDKERRDTPANAWSS 413
Query: 443 FFFN 446
+
Sbjct: 414 YVMG 417
>gi|32477871|ref|NP_870865.1| type II secretion system protein [Rhodopirellula baltica SH 1]
gi|32448428|emb|CAD77943.1| probable type II secretion system protein [Rhodopirellula baltica
SH 1]
Length = 704
Score = 252 bits (644), Expect = 8e-65, Method: Composition-based stats.
Identities = 110/496 (22%), Positives = 186/496 (37%), Gaps = 62/496 (12%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
+ PP A + EI +S+ L + IL++ + V D
Sbjct: 110 GLPAELILPPPSDAAKQRASRFVESEIDPEIPLSLVLGRPKILRLADTPTRIYVPDEDTI 169
Query: 78 DVVVH---SPRTMYLFGKNVGQANVILIGHD-----GKQMLNLDILIER------DIAHL 123
+ S R + + G G ++L D G+ +++ + + + L
Sbjct: 170 RTEIIDQESGRELAVTGVQPGTTTLMLWFKDSGAPSGQSVVSYLVRVYEDPILAKPVGDL 229
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-------------------- 163
E L +S + ++ ++D +++ G + + +++
Sbjct: 230 ETELNEKFPNSFVELDEIADRLIVRGQAPDAIEMSQILQILTGARGVRAGLTRPANPVTV 289
Query: 164 --SETFLSQSGRNQYANSSSKK-------------VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ F+ +++++ ++N + I GE QV LKVT+AEV R
Sbjct: 290 AAAYDFVGAVDPLTSEEAAAERRRNLDPIALSQAGIINQMKIVGEQQVMLKVTVAEVNRS 349
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
+ IG + + S+ G ++ LD + AL R
Sbjct: 350 AARSIGLNFGVDNDNGLTVFQSLTGNLASTQSQSGA-NILASLDMGQVRLAIEALRRLNL 408
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSP 325
RTLAEP L A++GQ A F +GGQ +SS V+ +GV L FTP +
Sbjct: 409 SRTLAEPNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQDR 468
Query: 326 GRIGLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
I L++ EVS + + R TTV+L SG TI +AGLL+ +
Sbjct: 469 DVIRLQMNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQTN 528
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSV 436
+ P +PI+GA +R + E E+ I TP LV PV + P
Sbjct: 529 YGASSDRTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDVYE 588
Query: 437 EDDAKAFFFNRVNKIY 452
D + F NR+
Sbjct: 589 PSDIEFFIANRLESRR 604
>gi|10956078|ref|NP_052165.1| exporter protein [Chlorobium limicola]
gi|1688247|gb|AAB36938.1| exporter protein [Chlorobium limicola]
Length = 461
Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats.
Identities = 93/461 (20%), Positives = 166/461 (36%), Gaps = 68/461 (14%)
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
+ L + I + ++ V V DP AD ++ + +YL GK +G N+++ G +
Sbjct: 8 RVPLGESRIYRFAQPIKRVAVGDPQVADYIMMNRSEIYLLGKKLGSTNLVVWDQKGN-VT 66
Query: 111 NLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
+ + + R L+ L+ N I ++ + +VL G V ++ + L +
Sbjct: 67 STPVQVSRGTTALQAFLKALFPKENDIHIDALGPALVLSGSVSDALVAESVIRLVTAYFG 126
Query: 170 Q---------------------------------------------------SGRNQYAN 178
Sbjct: 127 GSVSKSSPESALIGTDAKALTGVIGELNKSTTASNAESFAFFKKTLMMGDEKGASGSAGR 186
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
S++ V+NLL + QV L+V IA+V R L+ +G + GK
Sbjct: 187 DSTRGVINLLKVRDPQQVRLEVRIAQVSRSYLESLGLSVTKL-------TGDLTGSLGKL 239
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ + +L + ++ + A + + ++ LAEPT+ +SG+ F GG+ +
Sbjct: 240 STGFVSDATLDLLLKPDYDIKMGAKRKPSLLKILAEPTIVTMSGKEGYFLVGGKIYTPSR 299
Query: 299 SSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
S T + V P+ R+ + + R
Sbjct: 300 VESQLDTAKLNTKNTPTAWVYVLRPSCWMQAVFHSRLYPRFLNLTRNHSLLGLQKIGHRL 359
Query: 356 ----ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
T VE+ G +V+ GL D++ + +PLL +IPILGALFRN+ N E+TE+
Sbjct: 360 NSAPVSTAVEMNEGENLVIGGLKLDNLTNAIDSVPLLGEIPILGALFRNTDKNAEKTELM 419
Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
+ P LVK P D + + FF ++
Sbjct: 420 VIVRPTLVKASNTPP-ELPTDKFVPPTRGELFFGGKLEGSR 459
>gi|319940440|ref|ZP_08014785.1| type II and III secretion system protein [Sutterella wadsworthensis
3_1_45B]
gi|319806066|gb|EFW02815.1| type II and III secretion system protein [Sutterella wadsworthensis
3_1_45B]
Length = 530
Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats.
Identities = 121/498 (24%), Positives = 205/498 (41%), Gaps = 65/498 (13%)
Query: 2 RYLQRTFFTMMSI-FLFSSN--PSVAKLPPIKEANAAVINISDVE-----IGKGKKISIG 53
R RT F + L P+ A L + V+ + + +
Sbjct: 20 RKPSRTVFAAACLGALLGLAVSPASAALKAQVPTDVKVLEGASSLKNLKLAKPTSSLRVF 79
Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
L + +LQ+P VLV+ P A + SP ++ FG G + G + +
Sbjct: 80 LKEGALLQLPSAAAKVLVATPGIASYQMPSPDQVFFFGTAAGSTTFYALDEAGAVIAAVQ 139
Query: 114 ILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
+ +E ++ L+ ++R + ++I V +++ +++ G V+T DS+R +L E++L S
Sbjct: 140 VTVEHNLEKLKADIKRAVPSASIELVPALNNRMIVRGKVKTALDSRRVTQLVESYLVSSA 199
Query: 173 RNQYANSSSK------------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
S+ V+N L + QV ++V + EV R + +G
Sbjct: 200 AAGGPGQGSQQGGQDGGGQGGSAGGQSSPVINQLKVEVSQQVNIQVRVVEVSRSLTHSLG 259
Query: 215 FQHSI-------------------------------TGSSSGPSKSFAADFGGKFVSEGG 243
F S + + G
Sbjct: 260 FNWGAVLNTGRGPLFLGNGTSQGLFSTHAANNSHFNPNDSFADGNANIPGLMPDSNTAGA 319
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ R S +++A+ + LAEP LTA+SGQ A+F SGG+ + +
Sbjct: 320 ALGGIFNMGRMSLGVLINAMSESGFASLLAEPNLTAMSGQPAAFASGGEVPIVII--TGN 377
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADT 358
+ ++ +GV+L TPTVLSP RI + + EVSE +P+ RVR+A+T
Sbjct: 378 SITIDYKSWGVILRMTPTVLSPNRIAIHVAPEVSELTSEGQVILSEGSVIPAVRVRRAET 437
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TVEL SG + LAG+L+ + Q G+P L +P +G LF + E++E+ I T +
Sbjct: 438 TVELASGQSFALAGMLRSESSQTVNGVPGLRNLPFVGRLFEYEQTQVEDSELVILLTANI 497
Query: 419 VKPVAMRDLSRPDDHYSV 436
V PV+ DL P +
Sbjct: 498 VDPVSSGDLRVPGRGINA 515
>gi|260914312|ref|ZP_05920781.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella
dagmatis ATCC 43325]
gi|260631413|gb|EEX49595.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella
dagmatis ATCC 43325]
Length = 465
Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 87/429 (20%), Positives = 171/429 (39%), Gaps = 29/429 (6%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
I + + K ++ ++Q + + VS P AD + + ++ K G
Sbjct: 19 AILVLSPGVMFAKTFNLEQGGTQLIQTKEKIDTIFVSSPAIADYEILDDNSFIIYAKEQG 78
Query: 96 QANVILIGHDGKQMLNLDILIE---RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
+A + +GK + N + ++ I+ ++ ++N+ V+ V V+ G R
Sbjct: 79 RAEISAFDANGKTLTNDVVNVDSLFTGISDTNQQIKARFPNTNLSVKKVGKAYVIEGKAR 138
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVT 197
+ ++S + L + + V+N +N+ Q+
Sbjct: 139 SQEESDEVHRIVGEALGNGKKVTETKFKAGESEESLPFLDKYQFDGVVNNVNVDETTQIN 198
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
+K+T+ EV + + + +G S G V+ +D
Sbjct: 199 VKLTVVEVNKKLSEAVGINWS-----RLSGGVPDLLGGVSRVTGFDGIQGLLKIDASGVS 253
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
++AL+ R LAEP ++ +SG++A GG+ + T + D+G+ L
Sbjct: 254 AFINALDNQNNGRILAEPNISMLSGETADILVGGEIPFAQRDKEGAPTII-YKDFGIRLA 312
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
+ RI L + VS + G++P + R++ + E+ G + ++ GL
Sbjct: 313 VAAKLQKNNRIRLALDQRVSTIAGNYSFESVGEIPFFNTRRSKSVFEVADGESFIIGGLF 372
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
+ +P+L IPILGA FRN++ +RE+ E+ I AT VKPV ++ P +
Sbjct: 373 NSSDLEGINKVPVLGDIPILGAFFRNAKTDREDRELVIVATVNTVKPVQEDEIVYPT--F 430
Query: 435 SVEDDAKAF 443
+ F
Sbjct: 431 ERTGTMERF 439
>gi|59711120|ref|YP_203896.1| general secretion pathway protein D [Vibrio fischeri ES114]
gi|59479221|gb|AAW85008.1| general secretion pathway protein D [Vibrio fischeri ES114]
Length = 436
Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 108/409 (26%), Positives = 181/409 (44%), Gaps = 33/409 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
+++I + + + ++ + ++ V +S+P AD + + LFG+ VG
Sbjct: 12 LLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYKVVLFGREVG 71
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
+ I G+++LN I++ ++ + +E ++ S+I + + V+ G V +
Sbjct: 72 DSVFIAFDVQGRELLNKKIIVSKNYSGIEQQVKLRFPTSDIDIFAIGTNAVVSGTVLNEE 131
Query: 156 DSQRAVELSETFLSQSGRNQYANSSS-----------KKVMNLLNIAGEDQVTLKVTIAE 204
D + E+ T L + A + V+N + +A QV +K+TIAE
Sbjct: 132 DRDQIYEMVATLLFDDNADNNAQDDRTELTYMDKLNFEGVVNQIEVARTKQVNVKLTIAE 191
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
V ++ G + G G +V+ A+
Sbjct: 192 VSHSFMQDFGIKVGSNGQ------------------AGIFVDQLVHFSASDIVSVITAVG 233
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ + LAEP L+ ISG+ ASF GG+ TV GAT+V ++GV L T V
Sbjct: 234 TDSVGQVLAEPNLSVISGEDASFLVGGELPVVTVI--DGATNVQYKEFGVKLDLTAKVER 291
Query: 325 PGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+I L + VS + ++PS + R A TTVEL G + VL GLL + ++
Sbjct: 292 DDKIKLALAPSVSSLDTQYANDNYNLPSLKTRSARTTVELGDGQSFVLGGLLNSEEKESL 351
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
IP + IPILGALFR++ R +TE+ I AT LV+PV + P
Sbjct: 352 TRIPFVGDIPILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPT 400
>gi|261867455|ref|YP_003255377.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261412787|gb|ACX82158.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 420
Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats.
Identities = 91/404 (22%), Positives = 174/404 (43%), Gaps = 25/404 (6%)
Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
++Q + + VS P AD + T ++ K G+ V G DG+ + + + ++
Sbjct: 1 MVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 60
Query: 119 DIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
+ + L+ ++N+ V+ V V+ G R+ ++S + L +
Sbjct: 61 VVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKVT 120
Query: 176 YANSSSK-----------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
V++ NIA Q+ +K+++ EV + + + +G S S
Sbjct: 121 ETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHVAGSG 180
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
GG ++G LD ++AL+ + + LAEP ++ +SG++
Sbjct: 181 PLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFINALDNQSNGKVLAEPNISMLSGET 235
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
A GG+ + G+ ++ ++G+ L + RI L + VS N
Sbjct: 236 ADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNYN 294
Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
G++P + RKA + E+ +G + ++ GL + + +PLL IPILG+ FR++
Sbjct: 295 FDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRSA 354
Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
R++ E+ I AT +VKPV +D+ PD + + FF
Sbjct: 355 TTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKTGTMERFFH 396
>gi|197335194|ref|YP_002155269.1| general secretion pathway protein D [Vibrio fischeri MJ11]
gi|197316684|gb|ACH66131.1| general secretion pathway protein D [Vibrio fischeri MJ11]
Length = 436
Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats.
Identities = 109/409 (26%), Positives = 181/409 (44%), Gaps = 33/409 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
+++I + + + ++ + ++ V +S+P AD + + LFG+ VG
Sbjct: 12 LLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYKVVLFGREVG 71
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
+ I G+++LN I++ R+ + +E ++ S+I + + V+ G V +
Sbjct: 72 DSVFIAFDVQGRELLNKKIIVSRNYSGIEQQVKLRFPTSDIDIFAIGTNAVVSGTVLNEE 131
Query: 156 DSQRAVELSETFLSQSGRNQYANSSS-----------KKVMNLLNIAGEDQVTLKVTIAE 204
D + E+ T L + A + V+N + +A QV +K+TIAE
Sbjct: 132 DRDQIYEMVATLLFDDNADNNAQDDRTELTYMDKLNFEGVVNQIEVARTKQVNVKLTIAE 191
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
V ++ G + G G +V+ A+
Sbjct: 192 VSHSFMQDFGIKVGSNGQ------------------AGIFVDQLVHFSASDIVSVITAVG 233
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ + LAEP L+ ISG+ ASF GG+ TV GAT+V ++GV L T V
Sbjct: 234 TDSVGQVLAEPNLSVISGEDASFLVGGELPVVTVI--DGATNVQYKEFGVKLDLTAKVER 291
Query: 325 PGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+I L + VS + ++PS + R A TTVEL G + VL GLL + ++
Sbjct: 292 DDKIKLALAPSVSSLDTQYANDNYNLPSLKTRSARTTVELGDGQSFVLGGLLNSEEKESL 351
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
IP + IPILGALFR++ R +TE+ I AT LV+PV + P
Sbjct: 352 TRIPFVGDIPILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPT 400
>gi|221067360|ref|ZP_03543465.1| type II and III secretion system protein [Comamonas testosteroni
KF-1]
gi|220712383|gb|EED67751.1| type II and III secretion system protein [Comamonas testosteroni
KF-1]
Length = 520
Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats.
Identities = 126/492 (25%), Positives = 209/492 (42%), Gaps = 64/492 (13%)
Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI--------------SIGLNKVII 59
+ L SS P +A+ + + ++ L K ++
Sbjct: 1 MLLASSAPVLAQSAGTAAQPGPAAAAAPAPAAPRTTLPARNCTAIHTEDPTTVTLGKSVV 60
Query: 60 LQVPVDVQDVLV-------------SDPTK--------ADVVVHSPRTMYLFGKNVGQAN 98
+ + + +LV P +V + SPR ++ G+ G N
Sbjct: 61 IPLNSPMARILVSGQTPGAGQAAANGQPQMQVQNGMGDIEVQLLSPRDLFFRGRKSGSMN 120
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDS 157
VIL G D+++ D L+ L + + IRV+ + +VL G +
Sbjct: 121 VILQNAQGAC-FIKDVIVTMDPGPLQAKLSELMPEERSIRVQGADNALVLSGEISNPLRL 179
Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
V L+ + S SKK++NLL QV L+V IAE+ + +L ++G
Sbjct: 180 DDVVTLAGAY-----------SDSKKIVNLLRTTSPHQVMLEVKIAEISKTLLDKLGSSL 228
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
S G + + F+S GG L R S + + +R LAEP +
Sbjct: 229 S--GQRVTSNGQNSYTVLSNFLSGGGGLLNAMRLGRGSIS--IDGQKDDGLVRILAEPNI 284
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334
AISGQ ASF SGG+ ++T V ++G+ + FTPTVL R+ L++ +
Sbjct: 285 MAISGQQASFLSGGKIFIPVAQTNTNGVPVMTLEEKEFGIGVKFTPTVLGNSRVNLKLVS 344
Query: 335 EVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
EVS+ + +PS VR+ADTTV+L G ++V+AGL+K++I + + P
Sbjct: 345 EVSDLSQTGSPFTSINGVTSVIPSLTVRRADTTVQLNDGQSLVIAGLIKNNITEAIKRFP 404
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
L +IP+LGAL R++ F ++TE+ TP LV+ +A P D++ V A+ +
Sbjct: 405 GLGEIPVLGALARSTEFQTDQTELMFVITPRLVQALA-EAPRVPTDNHVVPSRAEVYLNG 463
Query: 447 RVNKIYGPKEAS 458
+
Sbjct: 464 ALESSKPAPAEK 475
>gi|170724970|ref|YP_001758996.1| type II and III secretion system protein [Shewanella woodyi ATCC
51908]
gi|169810317|gb|ACA84901.1| type II and III secretion system protein [Shewanella woodyi ATCC
51908]
Length = 446
Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats.
Identities = 100/417 (23%), Positives = 189/417 (45%), Gaps = 46/417 (11%)
Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
+ LN +++ ++ V +S P AD + + ++G+ +GQA + + + +L+
Sbjct: 29 VTLNDASSIELKQEIGTVFISQPEVADYKITGNNKLVIYGRQLGQARLFVYNKANEVILS 88
Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
+ ++ +++ + L+ F D ++ + V D V + G+V + + TFL +
Sbjct: 89 QLLHVDINLSQIRRQLKLFYPDLDLTLTSVGDKVAVRGIVYSEEQRNDIYRQVATFLGRE 148
Query: 172 GRNQYANSSS---------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
++ S + ++ L ++ QV +K+++A+V ++
Sbjct: 149 KVERFDESELVEFKDSFTEANWLAYERNFIWQGIIEGLRLSQTQQVNVKISVAQVTKEFN 208
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
+ +G S G S G T+++AL + +
Sbjct: 209 ETLGVSWSTVGRSVGEFSFLD-------------------FKASDLSTIINALGKDSIAE 249
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
LAEP L+ +SG+SASF GG+ + S+ T++T ++G+ L + VL+ +I L
Sbjct: 250 VLAEPNLSVMSGESASFLVGGEIPV--IFSNNNTTNITYKEFGIRLDLSAKVLNNEKIKL 307
Query: 331 RIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
++ EVS E + +P R+A TT+EL G + +L GL+ D + IPLL
Sbjct: 308 QMMPEVSAVEGFVEAAGIKIPQLTTRRAMTTIELGDGDSFLLGGLMSSDELENVSKIPLL 367
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
IP+ GALFR + R++TE+ I AT LVKP++ ++ P + FF
Sbjct: 368 GDIPVFGALFRQAGTTRKKTELVIVATVNLVKPLSPTEVRLP--KMTPTKSLARFFN 422
>gi|255658704|ref|ZP_05404113.1| putative type II/III secretion system protein [Mitsuokella
multacida DSM 20544]
gi|260849091|gb|EEX69098.1| putative type II/III secretion system protein [Mitsuokella
multacida DSM 20544]
Length = 548
Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats.
Identities = 95/443 (21%), Positives = 177/443 (39%), Gaps = 57/443 (12%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
+ +SI LN+ L ++ V +++P ADV + ++ + G + G +
Sbjct: 22 APAYAQFTPLSIDLNQSYYLNTGRNITRVAIANPKIADVSLLDGTSLNVIGISPGTTTLN 81
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+ +G I + + L ++ I ++RV+M+ ++L G V+ + A
Sbjct: 82 VWASNG-YRYEYRITVSDQDSGLAKIVQDAIGLPDVRVQMIGGKILLRGTVKNQYERNLA 140
Query: 161 VELSETFLSQSGRNQ---------------------------------------YANSSS 181
+++ + S + + S+
Sbjct: 141 YTIAKLYAKGSNSSPSQDQGQYVSTTESKSSMTPDGRYENKTVTNDSYQRTPRDTSGSTG 200
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
V+NLL + DQ+ ++ E+ K +G ++ S S + G + +
Sbjct: 201 DSVVNLLEMTNPDQINIEAMFVELGTSDAKNLGINYASQDMSDTDSSGIKMNDVGTYYAG 260
Query: 242 GGDFSVKGVLD-----------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ + +HAL R ++ P +T +SG++AS G
Sbjct: 261 ESYGRQRSGGNHWYNSNWLFTHFSKINAEIHALIENGKARVISRPNVTTMSGKNASILIG 320
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVS----EPVIGVNA 345
G+ Y+ + G+T+ + YG+ + PTV G I ++T+VS + +
Sbjct: 321 GEVPYQES-NGFGSTTTSYKTYGIGIQLWKPTVDQDGNITTELETQVSRLDWNNAVTKDG 379
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
MP R A TTV +PSG T+V+ GLL + + +PLL IPILG LF+ +R
Sbjct: 380 YRMPGIATRSAYTTVNIPSGMTMVIGGLLNSNDANTIQKVPLLGNIPILGELFKYHNKSR 439
Query: 406 EETEIFIAATPFLVKPVAMRDLS 428
++TEI + TP +V +S
Sbjct: 440 QKTEIVVLITPRVVSEETPARMS 462
>gi|165975974|ref|YP_001651567.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|165876075|gb|ABY69123.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 462
Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats.
Identities = 93/422 (22%), Positives = 171/422 (40%), Gaps = 27/422 (6%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
K ++ + +++ + + VS AD + + L+ K G++ VI
Sbjct: 24 SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFD 83
Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+G + +IA ++ +SN+ V+ V VL G + +S
Sbjct: 84 ANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEI 143
Query: 161 VELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVTLKVTIAEV 205
+ L + + V+N N Q+ +K+T+AEV
Sbjct: 144 NRIVGESLGAGKKVIETKLKHNNSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEV 203
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ +IG S + + A G F GG ++ ++ + ++ AL+
Sbjct: 204 NKTFSDEIGINWSNLSGNFFRNLG-NAGIQGNFNKNGGQLAL---VNSNNLNVLISALDN 259
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+ LAEP ++ +SG++A GG+ + G SV ++G+ L V
Sbjct: 260 QNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKS 318
Query: 326 GRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
RI L + VS + +P + R++ +T E+ +G + +++GLL + +
Sbjct: 319 DRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIK 378
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
+P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + F
Sbjct: 379 KVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERF 436
Query: 444 FF 445
F
Sbjct: 437 FN 438
>gi|54309660|ref|YP_130680.1| Flp pilus assembly protein [Photobacterium profundum SS9]
gi|46914098|emb|CAG20878.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
SS9]
Length = 461
Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats.
Identities = 112/403 (27%), Positives = 181/403 (44%), Gaps = 45/403 (11%)
Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
I LN L+ P ++ V VS P D V R + +F +GQA VI+ G + + +L+
Sbjct: 34 ITLNDANNLEFPQEIGTVFVSQPDILDYKVIDNRKLVIFSNKIGQAKVIVYGKENQVLLS 93
Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
++ +++ + L+ + D NI V V + V + G V + + T L +
Sbjct: 94 QRYHVDINLSQVRRQLKLYYPDLNISVSSVGEQVAVRGTVNNEKQRDDIYRMVATLLGKK 153
Query: 172 GRNQYANSSS----------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+Y + + ++ L IA QV +K+++A+V ++
Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYIWEGIVEGLVIAQAQQVNVKISVAQVTKEF 213
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
+ IG S G S G TV++A+
Sbjct: 214 NETIGVDWSTVGRSVGEFSFL-------------------KFKANDLSTVINAIGNDNIA 254
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
LAEP LT +SG+SASF GG+ + +T+++ ++G+ L + VLS I
Sbjct: 255 EILAEPNLTVLSGESASFLVGGEVPVIVT--NDNSTNISFKEFGIKLELSAKVLSNKSIK 312
Query: 330 LRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
L++ EVS E + ++P R+A TT++L G + +L GL+ D + IPL
Sbjct: 313 LQLAPEVSAVEGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISKIPL 372
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
L IPILGA FR S R++TE+ I AT LVKPV+ D+ P
Sbjct: 373 LGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415
>gi|46143341|ref|ZP_00204447.1| COG4964: Flp pilus assembly protein, secretin CpaC [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208037|ref|YP_001053262.1| rough colony protein A [Actinobacillus pleuropneumoniae L20]
gi|126096829|gb|ABN73657.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 5b
str. L20]
Length = 462
Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats.
Identities = 92/422 (21%), Positives = 170/422 (40%), Gaps = 27/422 (6%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
K ++ + +++ + + VS AD + + L+ K G++ VI
Sbjct: 24 SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFD 83
Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+G + +IA ++ +SN+ V+ V VL G + +S
Sbjct: 84 ANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEI 143
Query: 161 VELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVTLKVTIAEV 205
+ L + + V+N N Q+ +K+T+AEV
Sbjct: 144 NRIVGESLGAGKKVIETKLKHNDSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEV 203
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ +IG S + + AA G + G +++ + ++ AL+
Sbjct: 204 NKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGGQ----LALVNSNNLNVLISALDN 259
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+ LAEP ++ +SG++A GG+ + G SV ++G+ L V
Sbjct: 260 QNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKS 318
Query: 326 GRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
RI L + VS + +P + R++ +T E+ +G + +++GLL + +
Sbjct: 319 DRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIK 378
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
+P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + F
Sbjct: 379 KVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERF 436
Query: 444 FF 445
F
Sbjct: 437 FN 438
>gi|307245412|ref|ZP_07527500.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307254367|ref|ZP_07536205.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307258825|ref|ZP_07540557.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307261005|ref|ZP_07542687.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306853753|gb|EFM85970.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306862666|gb|EFM94622.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306867176|gb|EFM99032.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306869307|gb|EFN01102.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 462
Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats.
Identities = 92/422 (21%), Positives = 170/422 (40%), Gaps = 27/422 (6%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
K ++ + +++ + + VS AD + + L+ K G++ VI
Sbjct: 24 SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFD 83
Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+G + +IA ++ +SN+ V+ V VL G + +S
Sbjct: 84 ANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEI 143
Query: 161 VELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVTLKVTIAEV 205
+ L + + V+N N Q+ +K+T+AEV
Sbjct: 144 NRIVGESLGAGKKVIETKLKHNDGEENVPFLDKYQYEGVINNANEENATQINVKLTVAEV 203
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ +IG S + + AA G + G +++ + ++ AL+
Sbjct: 204 NKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGGQ----LALVNSNNLNVLISALDN 259
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+ LAEP ++ +SG++A GG+ + G SV ++G+ L V
Sbjct: 260 QNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKS 318
Query: 326 GRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
RI L + VS + +P + R++ +T E+ +G + +++GLL + +
Sbjct: 319 DRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIK 378
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
+P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + F
Sbjct: 379 KVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERF 436
Query: 444 FF 445
F
Sbjct: 437 FN 438
>gi|190149865|ref|YP_001968390.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|307249759|ref|ZP_07531737.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307256574|ref|ZP_07538355.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307263189|ref|ZP_07544810.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189914996|gb|ACE61248.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|306858174|gb|EFM90252.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306864984|gb|EFM96886.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306871551|gb|EFN03274.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 462
Score = 249 bits (635), Expect = 9e-64, Method: Composition-based stats.
Identities = 92/422 (21%), Positives = 170/422 (40%), Gaps = 27/422 (6%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
K ++ + +++ + + VS AD + + L+ K G++ VI
Sbjct: 24 SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFD 83
Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+G + +IA ++ +SN+ V+ V VL G + +S
Sbjct: 84 ANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEI 143
Query: 161 VELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVTLKVTIAEV 205
+ L + + V+N N Q+ +K+T+AEV
Sbjct: 144 NRIVGESLGAGKKVIETKLKHNNSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEV 203
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ +IG S + + AA G + G +++ + ++ AL+
Sbjct: 204 NKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGGQ----LALVNSNNLNVLISALDN 259
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+ LAEP ++ +SG++A GG+ + G SV ++G+ L V
Sbjct: 260 QNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKS 318
Query: 326 GRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
RI L + VS + +P + R++ +T E+ +G + +++GLL + +
Sbjct: 319 DRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIK 378
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
+P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + F
Sbjct: 379 KVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERF 436
Query: 444 FF 445
F
Sbjct: 437 FN 438
>gi|90412176|ref|ZP_01220182.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
3TCK]
gi|90326900|gb|EAS43285.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
3TCK]
Length = 461
Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats.
Identities = 109/403 (27%), Positives = 182/403 (45%), Gaps = 45/403 (11%)
Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
+ LN L+ ++ V VS P D V R + +F +GQA VI+ G D + +L+
Sbjct: 34 VTLNDANNLEFSQEIGTVFVSQPDILDYKVIDSRKLVIFSNKIGQAKVIVYGKDNQVLLS 93
Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
++ +++ + L+ + D +I V V + V + G V + + T LS+
Sbjct: 94 QRYHVDINLSQVRRQLKLYYPDLSISVTSVGEQVAIRGTVNNEKQRDDIYRMVATLLSKK 153
Query: 172 GRNQYANSSS----------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+Y + + ++ L +A QV +K+++A+V ++
Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYTWEGIIEGLVVAQAQQVNVKISVAQVTKEF 213
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
+ IG S G S G TV++A+
Sbjct: 214 NETIGVDWSTVGRSVGEFSFLE-------------------FKANDLSTVINAIGNDNIA 254
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
LAEP LT +SG+SASF GG+ + +T+++ ++G+ L + VLS +I
Sbjct: 255 EILAEPNLTVLSGESASFLVGGEVPVIVT--NDNSTNISFKEFGIKLELSAKVLSNKKIK 312
Query: 330 LRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
L++ EVS + + ++P R+A TT++L G + +L GL+ D + IPL
Sbjct: 313 LQLAPEVSAVDGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISKIPL 372
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
L IPILGA FR S R++TE+ I AT LVKPV+ D+ P
Sbjct: 373 LGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415
>gi|134295595|ref|YP_001119330.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
gi|134138752|gb|ABO54495.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
Length = 443
Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats.
Identities = 109/462 (23%), Positives = 175/462 (37%), Gaps = 45/462 (9%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
A A I + + + +Q V V DP ADV++
Sbjct: 4 TLTAFAMALWALTFASMASASGTIELAVGAQRQIAAGRALQRVAVGDPAIADVLIMKGSR 63
Query: 87 ---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
+ L K G NV++ + ++ + ++ + + S +V+
Sbjct: 64 AGSVLLTAKAPGTTNVMVWERGHDEPTVWNVEV------VDAAAQAVLDASTPQVKAYGG 117
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
T VL G ++ +RAV +++ + + + K V+ +
Sbjct: 118 TSVLRGTAGSLDAHERAVAVAKNMSPKGAVIDRSTLAGKNVVQVDVRVV----------- 166
Query: 204 EVRRDILKQIGFQH---------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
E R +LKQ+GF + + G AA F++
Sbjct: 167 EFSRSVLKQVGFNFFKQSNGFSFGSFSPGGVQSYNGGSGPGTAAYIPTLGAPVASAFNLV 226
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
L LE R LAEPTL A+SGQSASF +GG+ G+T++
Sbjct: 227 VNAAGHGIFADLSLLEANNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQ 285
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPS 364
YGV L TPTVLSP RI L++ E S+ + ++ +P R+ADTTVEL
Sbjct: 286 WKQYGVGLSLTPTVLSPNRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGD 345
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G + V+ GL+ +PLL +PI+G F+N + + + E+ I TP LV P+A
Sbjct: 346 GESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAK 405
Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+ + V + Y AS +
Sbjct: 406 GAVLPAT-----PGELAEQHDGPVWRSYLGGAASPDAAPGFS 442
>gi|319941902|ref|ZP_08016223.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis
3_1_45B]
gi|319804555|gb|EFW01425.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis
3_1_45B]
Length = 485
Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats.
Identities = 119/450 (26%), Positives = 211/450 (46%), Gaps = 36/450 (8%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+S+ L + L + V V+ P+ A V R + +FG G+ +++++G DG+ +
Sbjct: 1 MSVSLYQGKALSFNEQIGAVFVAQPSIASYQVVGNRKVVVFGSYPGKTSLMVLGTDGRTL 60
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS------------ 157
N + + D++ +EM L+ +++ ++D V + G V T Q++
Sbjct: 61 YNGLVEVAYDVSSMEMALKSSFPKLKLQLVALNDGVAVRGKVETAQEAANVVAFLDAMLQ 120
Query: 158 ---QRAVELSETFLSQSGRNQYANSSS-----------KKVMNLLNIAGEDQVTLKVTIA 203
Q+A + + Q S + K++N L + +QVT++V A
Sbjct: 121 VNPQQAQMAAADVSAAGQEGQQEKSGAATGTGTLGARIGKIINQLTVTTPNQVTVRVRFA 180
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS----VKGVLDRFSFETV 259
EV R + Q+GF+ + S S +F + + + RF+F ++
Sbjct: 181 EVNRKLSDQLGFKWKGSYSGSRGGITFGSADNPIISNPNNSLGHLFDPATMAARFTFGSL 240
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
A+ + LAEP LT +SG++ASF +GGQ +++ G + DYGV+L T
Sbjct: 241 FDAMASEELVSILAEPNLTVVSGETASFLAGGQIPFQSS-DGDGGFDIEFKDYGVLLSIT 299
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
PT+LS RI LR++ EVSE P + VR+A++T+EL SG + +AGLLK
Sbjct: 300 PTILSGNRISLRLRPEVSERSDSNGIQFMGSTQPGFIVRRAESTIELASGQSFAIAGLLK 359
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
+D IP ++ +PI+GAL R+ F R ETE+ I AT ++ P + + P++
Sbjct: 360 NDFSNTVNKIPGIADLPIIGALARSKAFERGETELVIVATAYISTP-SGEPYTIPNEEMY 418
Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
V + +F + ++ ++
Sbjct: 419 VPTIFERYFMDADPQVSSGTALKTARKPSF 448
>gi|264678238|ref|YP_003278145.1| type II and III secretion system protein [Comamonas testosteroni
CNB-2]
gi|262208751|gb|ACY32849.1| type II and III secretion system protein [Comamonas testosteroni
CNB-2]
Length = 523
Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats.
Identities = 121/444 (27%), Positives = 199/444 (44%), Gaps = 54/444 (12%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLV------------------------SDPTKA 77
I ++ L K +++ + + +LV
Sbjct: 42 TAIRTEDPTTVTLGKSVVIPLSSPMARILVSGQTPGAGQAAAPMAANAQPQMQNGMGDI- 100
Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-I 136
+V + SPR ++ G+ G NVIL G D+++ D L+ L + + I
Sbjct: 101 EVQLLSPRDLFFRGRKSGSMNVILQNAQGAC-FIKDVIVTMDPGPLQAKLSELMPEERSI 159
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
RV+ + +VL G + V L+ + S SKK++NLL QV
Sbjct: 160 RVQGADNALVLSGEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQV 208
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
L+V IAEV + +L ++G S+ G + F+S GG + + S
Sbjct: 209 MLEVKIAEVSKTLLDKLGA--SLAGQRITSNGMNTFSIASNFLSGGGGLLSAMRIGKGSI 266
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYG 313
+ + +R LAEP + AISGQ ASF SGG+ S+T V ++G
Sbjct: 267 S--IDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSNTTGVPVMTLEEKEFG 324
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSG 365
+ + FTPTVL R+ L++ +EVS+ + +PS VR+ADTTV+L G
Sbjct: 325 IGVKFTPTVLGGSRVNLKLVSEVSDLSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDG 384
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
++V+AGL+K++I + + P L +IP+LGAL R++ F ++TE+ TP LV+ +A
Sbjct: 385 QSLVIAGLIKNNITEAVKRFPGLGEIPVLGALARSTEFQTDQTELMFIITPRLVQALA-E 443
Query: 426 DLSRPDDHYSVEDDAKAFFFNRVN 449
P D++ V A+ + +
Sbjct: 444 APRVPTDNHVVPSRAEVYLNGALE 467
>gi|84385704|ref|ZP_00988735.1| rough colony protein RcpA [Vibrio splendidus 12B01]
gi|84379684|gb|EAP96536.1| rough colony protein RcpA [Vibrio splendidus 12B01]
Length = 447
Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats.
Identities = 106/406 (26%), Positives = 171/406 (42%), Gaps = 36/406 (8%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ +S+ + + ++ V V++ AD + + + ++G G ++I
Sbjct: 23 ASELLSLDQGGAKTINIKRNIDTVFVANSQIADYKIIANGKLVIYGIGRGATSIIAYDRA 82
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G ++ N ++++ + + L+ TL D NI++ + + VVL G+V + + L
Sbjct: 83 GNEIYNAEVVVNKSLRLLKQTLVARYPDENIKLTNIGEQVVLDGVVSSEEVKANVYRLVG 142
Query: 166 TFLSQ-----------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + + A + ++N L + +Q+ +K+T+AEV
Sbjct: 143 EMMKKSKERHTFELSGANGESVDALDFTATYVFQDIINNLKVLTTEQINVKLTVAEVSSS 202
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L ++G + A G G + V+ A
Sbjct: 203 FLTELGVSY-------------AESNGKSIGGAGTFVNKILDFTAQDIVAVISASGNDNI 249
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
R LAEP L+ ISG+SASF GG+ S+T +YGV L V I
Sbjct: 250 GRVLAEPNLSVISGESASFLVGGEIPI--AVRDNDGVSITYKEYGVKLSMVAKVTDSENI 307
Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
L + EVS +PS R RKA TTV+L G + VLAGLL + Q+
Sbjct: 308 RLSLLPEVSSIDKANGVNSGLISVPSLRTRKAQTTVQLKDGQSFVLAGLLTTEEQESLSR 367
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
IPLL IPILGALF + R +TE+ I AT LV PV ++ P
Sbjct: 368 IPLLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKEDEIKLP 413
>gi|167587316|ref|ZP_02379704.1| type II and III secretion system protein [Burkholderia ubonensis
Bu]
Length = 477
Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats.
Identities = 106/460 (23%), Positives = 176/460 (38%), Gaps = 54/460 (11%)
Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHD 105
I + + + +Q V V DP+ ADV++ + L K G NV+L
Sbjct: 29 SIDLAVGSQRQIAAGRALQRVAVGDPSVADVLIMKGSRAGAVLLVAKAPGSTNVMLWERG 88
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ ++ + S + D VL G ++ +RA + +
Sbjct: 89 RDEPMVWNV------NVVDAAAHAVLDSSTPDAKAYGDVAVLSGSAASLDAHERAAAIGQ 142
Query: 166 TFL-----------------------SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
+ V++ + G + V + V +
Sbjct: 143 HMADKGGAAAGGNWGAGDAGATGKRGGGASGTLGKAGKGGAVIDASTVGGRNTVQVDVRV 202
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGV 250
E R +LK+ G + A + F++
Sbjct: 203 VEFSRSVLKEAGLNFFKQSNGFAFGAFTAGGLQSITGAATSAFQATAGIPVASAFNLVAN 262
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
L LE R LA+PTL A+SGQSASF +GG+ V + G+T++
Sbjct: 263 SAGRGIFANLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIQWK 321
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGG 366
YGV L TPTVLSP RI L++ E S+ + +N+ +P+ R+ADTTVEL G
Sbjct: 322 QYGVGLTLTPTVLSPRRIALKVAPESSQLDFLHGVTINSVAVPAITTRRADTTVELGDGE 381
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+ V+ GL+ + +P+L +PI+GA F+ + + + E+ I TP LV P+A
Sbjct: 382 SFVIGGLIDRETMSNVNKVPVLGDLPIIGAFFKTLNYQQNDKELVIIVTPHLVAPIAKGA 441
Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
S P + + V + Y AS +
Sbjct: 442 -SLP----ATPGELSEQRDGPVWRSYLGGIASPDAAPGFS 476
>gi|121607248|ref|YP_995055.1| type II and III secretion system protein [Verminephrobacter
eiseniae EF01-2]
gi|121551888|gb|ABM56037.1| type II and III secretion system protein [Verminephrobacter
eiseniae EF01-2]
Length = 714
Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats.
Identities = 88/438 (20%), Positives = 172/438 (39%), Gaps = 41/438 (9%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
A+ P + + + + +I + + + + P V + V +
Sbjct: 60 LQARKPAPTPSQPYLPIRKQDDQAQVPEIEMFVGESRVFPSPG-VARIAVGNGKVLTAAA 118
Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEM 140
R + +F VG +++ + DG+ ++ D + + F++ +N + +
Sbjct: 119 LDEREVIVFANEVGTSSLFVWNEDGRYQRVKINVVPGDTSRYAREIAAFLSTIANTKASI 178
Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLK 199
+ D V++ G + D ++ +L + + +++N I E V +
Sbjct: 179 IGDKVIVEGDNLSDIDLRKIEDLRKHY--------------PQIVNFTNQIGWEQMVLMD 224
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPS------------------KSFAADFGGKFVSE 241
V + E + L+++G + + G +S G +
Sbjct: 225 VKVVEFPVNELRELGLRWAAKGGASIGGIWSPIRRVHQDGLRIDVESPPITAADGDLIPL 284
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
++ L+ L L LA+P L+A +G A F +GG++ Y S +
Sbjct: 285 PKGLNILSALN-MGLGAKLDLLASQGKASILAQPQLSARNGAKAEFLAGGEYPYVASSIN 343
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
V YG+ L TP V G I I +EVS ++ P+ VR+ T
Sbjct: 344 GPT--VMFKPYGIRLKITPRVDRNGVIRAEIDSEVSNIDPSISTAAGPALSVRRTFTEFN 401
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ +G T+VL+GL+ Q + +P L +P+LGALFR+ RF +ETE+ + TP ++
Sbjct: 402 VQNGETMVLSGLMSRKTSQNIDKVPFLGDLPVLGALFRSKRFQNDETELVVFVTPTVINS 461
Query: 422 VAM---RDLSRPDDHYSV 436
+ + + R D
Sbjct: 462 QSPGLVQRIERITDDLRQ 479
>gi|198284413|ref|YP_002220734.1| type II and III secretion system protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218666419|ref|YP_002427081.1| bacterial type II/III secretion system protein [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198248934|gb|ACH84527.1| type II and III secretion system protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518632|gb|ACK79218.1| bacterial type II/III secretion system protein [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 478
Score = 246 bits (627), Expect = 8e-63, Method: Composition-based stats.
Identities = 114/487 (23%), Positives = 189/487 (38%), Gaps = 43/487 (8%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++ L + A A + + + G + ++I + L
Sbjct: 6 MSSLAVATLAALGSQGAWAEGPAAEGGAHPSWAAHQSGGYRALNIPVGTQQTLSFTEPAY 65
Query: 68 DVLVSDPTKADVVVH---SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
V V +P A V R + G + G ++++ K + + +
Sbjct: 66 RVAVGNPKTASVAPLPRSGGRQFLITGLSTGTTSLLVWNLGHKTPKVWQLQVSVPVPGAP 125
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
+ V D V L G V + A + KV
Sbjct: 126 LAAPAPGMPE---VRAQGDAVTLSGAVADQVKH----------EAALEAAALAAGKTGKV 172
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGGKFV 239
++ I +D+V + V + E + LK +G + + GPS +A++
Sbjct: 173 IDQSVIPVDDEVQVGVKVVEFSKAQLKNVGINIFSSTGGFSLGTFGPSTLTSANYPVSLA 232
Query: 240 SEGGD-------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
S G F++ G + + L LE +R LAEPTL A++GQ AS
Sbjct: 233 SGGPGALAITGVAPFTQAFNLVGGVGNSGLSSYLSLLEGNNILRVLAEPTLVAMNGQQAS 292
Query: 287 FTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340
F +GG+ SS T ++ YGV L TPT+LS RI L + VS
Sbjct: 293 FLAGGEIPIPVPQSSGVGTPTITIQYKKYGVQLDLTPTILSAHRIALHVAPSVSSLDYTN 352
Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
I +N +P+ VR+ADTTV L +G ++V+ GL+ +QQ +P+L +PILGA FR
Sbjct: 353 AITLNGYSVPALLVRQADTTVTLGNGESLVIGGLVDRQMQQNISKVPILGDLPILGAFFR 412
Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
+ ++++++ E+ I TP LV+P+A P + F + + G
Sbjct: 413 SIQYSKQDMELAIIVTPRLVRPIAAGAKLPPLPGAAFA--HSRFNLGKAVLLPGSDYNQP 470
Query: 460 VEGQNYK 466
G Y
Sbjct: 471 DNGPGYS 477
>gi|84385684|ref|ZP_00988715.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01]
gi|84379664|gb|EAP96516.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01]
Length = 456
Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats.
Identities = 106/423 (25%), Positives = 189/423 (44%), Gaps = 47/423 (11%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A +I + + SI LN +Q+ + V +++P D + + T+ +F
Sbjct: 17 APLIGLLSITNAFAADRSITLNDGQHIQLKSPIGQVFINNPDIVDYKIINDNTIVVFANA 76
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
+GQ+ +I+ G DG +L+ I+++ D+ + L+ ++ ++++ V + V + G+V +
Sbjct: 77 IGQSRLIVYGIDGDVLLSDRIIVDLDLTDIRRQLKFHFPNAKVKIQSVGEQVAVSGLVDS 136
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSS------------------------KKVMNLLN 189
L T L + ++ + + ++ +
Sbjct: 137 EATRDDIYRLVATLLGREKTEKWDKTVKLEFKSDSSNYEEPESFVFARNMTWEGIIERIE 196
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
+A QV +K+++A+V + +G S GSS G V
Sbjct: 197 VATTQQVNVKISVAQVTESFGQTVGVDWSSVGSSVGEF-------------------VFD 237
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
D + T++ AL LAEP LT +SG+SASF GG+ +S+ +++
Sbjct: 238 QFDAANLSTLITALGNDQIAEVLAEPNLTVLSGESASFLVGGEVPVIVTTSNN--VNISF 295
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELPSGGT 367
++G+ L T VLS RI +++ EVSE +P R+A TTVEL G +
Sbjct: 296 KEFGIKLDLTAKVLSQDRIRMQLAPEVSEVEGYIETAGIKVPQLASRRAMTTVELADGDS 355
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
VL GL+ + + IP + IP+LGA FR + R+ TE+ I AT LV+P+ +D+
Sbjct: 356 FVLGGLMSSADLEKMQKIPFVGDIPVLGAAFRKATTERKRTELIIVATVNLVEPMKPKDI 415
Query: 428 SRP 430
P
Sbjct: 416 QLP 418
>gi|238790280|ref|ZP_04634054.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii
ATCC 33641]
gi|238721630|gb|EEQ13296.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii
ATCC 33641]
Length = 463
Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 107/440 (24%), Positives = 191/440 (43%), Gaps = 48/440 (10%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
A + + + I + + L+V V V +S+P AD V + + +F +
Sbjct: 21 AAFIAMALMIGSAFSQDIYMEKGEARTLKVNAAVDTVFISNPDVADYEVIDEKQVVIFAR 80
Query: 93 NVGQANVILIGHDGK-QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G+A++ + G D ++ + I+++ + +++ + S+I ++ + VL G V
Sbjct: 81 ENGRASLEIYGGDNNATLMTMSIIVDPLLGNIKKEMAEEYPGSDIDIKKYGEGYVLTGTV 140
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKV------------------------MNL 187
+ L + V +N
Sbjct: 141 PDEDAREGIYMTVGQALGLKRKETELKIKPGSVNSIGGDDSNDTPIDFMQKVVFEGLVNR 200
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
L + +QV +K+T+ EV + + +G S + G
Sbjct: 201 LKLPTTNQVNVKLTVVEVTKTFMDNVGVDWS-----------------NAGLGAGQFNLT 243
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
K D S ++++A++ + R LAEP L+ +SG++A F GG+ V++S +++
Sbjct: 244 KFRFDANSLNSLIYAIKNDSIARILAEPNLSVLSGETADFLVGGEIPI--VTTSMAGSTI 301
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSG 365
T ++GV L V S +I L + E+S + ++P R RKA TTVEL G
Sbjct: 302 TYKEFGVKLVIAAKVESNNKIKLNLSEEISSLDGQYALGDLNIPKLRSRKARTTVELGDG 361
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+ VL GLL ++ ++ GIP +S IPILGALFR + RE TE+ + AT LVKP++
Sbjct: 362 DSFVLGGLLNENEKESLSGIPFISDIPILGALFRRTGAERERTELVVVATVNLVKPISFN 421
Query: 426 DLSRPDDHYSVEDDAKAFFF 445
+ P ++ + A+ FF
Sbjct: 422 KVVLP--NFVRSNLAERFFN 439
>gi|148975962|ref|ZP_01812751.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium
SWAT-3]
gi|145964707|gb|EDK29960.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium
SWAT-3]
Length = 456
Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats.
Identities = 109/456 (23%), Positives = 193/456 (42%), Gaps = 64/456 (14%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
MR R + L + ++ SI LN +
Sbjct: 1 MRITHRVKRALFGSILVTLVGLLSTTNTFAADR-----------------SITLNDGQHI 43
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
Q + V +++P+ D + + T+ +F +VGQ+ +I+ G D +L+ I+++ ++
Sbjct: 44 QFKSPIGQVFINNPSIVDYKIINDNTLVVFANSVGQSRLIVYGVDDDVLLSDRIIVDLNL 103
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+ L+ D+ ++V+ V + V + G+V + L T L + ++ +
Sbjct: 104 TDIRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEATRDDIYRLVATLLGRDKTEKWDKTQ 163
Query: 181 S------------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
+ ++ + +A QV +K+++A+V + +G
Sbjct: 164 KLEFKSDSSDYEEPESMVFARNMTWEGIIERIEVATTQQVNVKISVAQVTESFGQTVGVD 223
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
S GSS G V D + T++ AL LAEP
Sbjct: 224 WSTVGSSVGEF-------------------VFDQFDAANLSTLITALGNDQIAEVLAEPN 264
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
LT +SG+SASF GG+ +SS +++ ++G+ L T VLS +I +++ EV
Sbjct: 265 LTVLSGESASFLVGGEVPVIVSTSSN--VNISFKEFGIKLDLTAKVLSQDKIRMQLAPEV 322
Query: 337 SEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
SE + +P R+A TTVEL G + VL GL+ + + IP + IP+L
Sbjct: 323 SEVEGYVEAAGIKVPQLASRRAMTTVELADGDSFVLGGLMSSADLEKMQKIPFVGDIPVL 382
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
GA FR + R+ TE+ I AT LV+P+ +D+ P
Sbjct: 383 GAAFRKATTERKRTELIIVATVNLVEPMKPKDIQLP 418
>gi|322419944|ref|YP_004199167.1| type II and III secretion system protein [Geobacter sp. M18]
gi|320126331|gb|ADW13891.1| type II and III secretion system protein [Geobacter sp. M18]
Length = 493
Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats.
Identities = 108/388 (27%), Positives = 164/388 (42%), Gaps = 35/388 (9%)
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGK----QMLNLDILIERDIAHLEMTLRRFIADSN 135
+ S + L G +G ++I+ D+ + D +E L+
Sbjct: 115 EILSEYVLKLDGTAIGSTSMIIWTKGEGDERPAPTFFDLKVTGDREAIENQLKEMAPKET 174
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
I V+ SDTVVL G V Q +A E+++ F KV+N + + Q
Sbjct: 175 IVVQYASDTVVLSGNVANDQTKTKAFEIAKAFAP-------------KVINNMTVNVPQQ 221
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF- 254
V L+V +A+V + LK++G I GS++ + A G G +
Sbjct: 222 VLLQVKVAQVDKSSLKKLGISFLIKGSTAEGFSNLVAGPDGAVTGIGTGAATGIGDFPSL 281
Query: 255 ------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
VL AL + LAEP L S Q F +G + + S+
Sbjct: 282 DSFQAGVSYFPAGIGAVLSALSSKGLAKVLAEPNLLVRSSQEGYFLAGSKIPIAILESTG 341
Query: 303 GA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTT 359
G TS+ G+ L F P VL G I L+I EVS + P R +T+
Sbjct: 342 GQATTSIRYEPVGIKLKFKPEVLENGMISLKINPAEVSSIQGFLPVNGYPIIDTRTVETS 401
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VEL G +++LAGLL++D + IPLL IPILGALFR+S + +E E+ TP +V
Sbjct: 402 VELKDGESLILAGLLQEDEIKNMSKIPLLGDIPILGALFRSSSSDIKEKELVFFITPKIV 461
Query: 420 KPVAMR-DLSRPDD-HYSVEDDAKAFFF 445
+P A + P D + E + + +
Sbjct: 462 QPTAPGVKVEMPTDKKLTPEQEKELSWM 489
>gi|320101627|ref|YP_004177218.1| type II and III secretion system protein [Isosphaera pallida ATCC
43644]
gi|319748909|gb|ADV60669.1| type II and III secretion system protein [Isosphaera pallida ATCC
43644]
Length = 712
Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats.
Identities = 101/536 (18%), Positives = 192/536 (35%), Gaps = 102/536 (19%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA-------DV 79
P + + + ++ ++S+ + + ++Q+ ++ +P A DV
Sbjct: 151 PNPRPITGQIAELFELIQDPSVELSVVVGRGKVIQLREQPLRFILGNPRIATLSFPPSDV 210
Query: 80 VVH-------SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
R ++G G + + + + + D ++ +R
Sbjct: 211 QSLAQLDRPSDARLFVVYGIQAGTTTLTIWDKNN-VPTTFLVRVSVDTLDIQNQIRAVFP 269
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE--------------------------- 165
+++ V ++ ++L G V + + L
Sbjct: 270 GTDVTVRQSANQIILEGQVPDTKTMNEVIRLVNGLLVSNQAGEVRAPTGAGGGGGGQSVG 329
Query: 166 --TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------ 217
++ ++ + S +++N L + G Q+ LKV +AE+ R +++IG
Sbjct: 330 AFAAAERALGDEAPSGISPQIINRLRVPGPRQILLKVKLAELNRTAIREIGANWLRGRNN 389
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVK----------------------------- 248
S+ GS G F + + + S
Sbjct: 390 SLIGSQIGGIAGFTTETNTQMTAAFAAPSFGRPGIAGGQPIPGSVTGSLIQGIDTLLNAT 449
Query: 249 ------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
G+ F+ L+AL LAEP LTA+ GQ A +GG+ +
Sbjct: 450 AGSALQPSAQLFGIFRAGEFDLFLNALRTNNLATILAEPNLTALDGQPARVIAGGEIPFP 509
Query: 297 TVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAG 346
++ +G +L F P +L I L ++ S P G +N
Sbjct: 510 VPQLGAGGGGGGAVITIQFRPFGAILTFLPQILEDDLIRLDVEPVFSTPNQGLGTSINGT 569
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+P + R A T V+L G T+ +AGL++ + Q IPLL PI+G LF +RF
Sbjct: 570 AVPGFNTRSARTVVQLREGETLAIAGLIQKNNQAATNRIPLLGDAPIVGPLFSRNRFETL 629
Query: 407 ETEIFIAATPFLVKPVAMRDLS-RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
ETE+ + TP+L+ P+ ++ P D+ +D + F R G S ++
Sbjct: 630 ETELIVIVTPYLIAPMGEGEVPKVPTDYVDEPNDIEFFILGRTEGKTGIPHRSTIQ 685
>gi|153833257|ref|ZP_01985924.1| general secretion pathway protein D [Vibrio harveyi HY01]
gi|148870528|gb|EDL69443.1| general secretion pathway protein D [Vibrio harveyi HY01]
Length = 456
Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats.
Identities = 109/406 (26%), Positives = 184/406 (45%), Gaps = 47/406 (11%)
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
SI LN + V + V +S+P AD V + T+ +F +GQ+ +I+ G D +L
Sbjct: 34 SITLNDGQHISVKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQSRLIVYGIDEDVLL 93
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
+ I+++ D+ + L+ D+ + V+ V + V + G+V + + L T L +
Sbjct: 94 SDRIIVDLDLTEIRRQLKFHFPDAKVTVQSVGEQVAVGGVVDSEETRDEIYRLVATLLGR 153
Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
++ + K ++ + +A QV +K+++A+V
Sbjct: 154 EKTEKWDKTYKFEFKSDYAQYEEPEGMIFARNMTWKGIVERIQVATTQQVNVKISVAQVT 213
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
K +G S GSS G V D + T++ AL
Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
LAEP LT +SG+SASF GG+ + S+ +++ ++G+ L T VLS
Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPV--IVSTNNNVNISFKEFGIKLDLTAKVLSQD 312
Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I +++ EVSE + +P R+A TTVEL G + +L GL+ + +
Sbjct: 313 KIRMQLAPEVSEVESYVEAAGVKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
IP + IPILGA FR + R+ TE+ I AT LV+P+ +D+ P
Sbjct: 373 IPFVGDIPILGAAFRKATTERKRTELIIVATVNLVEPIKPKDVQLP 418
>gi|188592032|ref|YP_001796630.1| type II secretion system protein; precursor [Cupriavidus
taiwanensis LMG 19424]
gi|170938406|emb|CAP63393.1| putative Type II secretion system protein; putative precursor
[Cupriavidus taiwanensis LMG 19424]
Length = 475
Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats.
Identities = 97/463 (20%), Positives = 181/463 (39%), Gaps = 45/463 (9%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+Q+T +++ ++A + A + +++ + L+
Sbjct: 8 IQKTSAHAVTLRRRLLQLTLAAMIATTAWCALAPRAQAQDAATARQLRLMAGAQKELRSA 67
Query: 64 VDVQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
V+ V V +P AD ++ R ++ L K G +V++ G + N +
Sbjct: 68 QPVERVAVGNPAVADALILRTRGAPSVLLVAKQPGVTDVMVWTRGGAEPQNYSV------ 121
Query: 121 AHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ D+N ++ + V + G + +++ +
Sbjct: 122 -----QVDAIAPDANGAQLGYSAAGVTITGQSPDAYGAA-----RAQAAARAATAGKTDG 171
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
V++ + V + V + E+ + +LK++G S +
Sbjct: 172 KPGLVVDRSTVPLSGTVQVDVKVVEISKTVLKEVGINFFRNNSGFAFGTFSPSTLNKFTF 231
Query: 240 SEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISG 282
+ G + + LE R LAEP+L A+SG
Sbjct: 232 TPGSGGAPGSFSADIASPMSNAFNLVAASLTHGIFANISLLEANGLARVLAEPSLVALSG 291
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
QSASF +GG+ V + G T++ +G+ L +PTVLS RI L++ E S+
Sbjct: 292 QSASFLAGGEIPIP-VPQALGTTTIQFKPFGIGLTVSPTVLSADRIALKVAPEASDLDPS 350
Query: 343 ----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
+N +P+ R+ADTTVEL G + V+ GL+ + +P+L +P++GA F
Sbjct: 351 RGISINGAVVPAIVTRRADTTVELGDGESFVIGGLVSRNTVSNVNKVPVLGDLPVIGAFF 410
Query: 399 RNSRFNREETEIFIAATPFLVKPVA---MRDLSRPDDHYSVED 438
+N F++E+ E+ I TP LVKP+A + D +
Sbjct: 411 KNLNFHQEDRELMIVVTPRLVKPMAKNSPAAQAVGADGRTSAS 453
>gi|149188846|ref|ZP_01867136.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
gi|148837266|gb|EDL54213.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
Length = 453
Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats.
Identities = 104/415 (25%), Positives = 186/415 (44%), Gaps = 47/415 (11%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ + I +N +++ + V VSDP D V + ++ +F K VGQA +++
Sbjct: 22 SSMAYSGETYITVNDAKNIELSERITKVFVSDPDIVDYNVINENSIVIFSKAVGQARLMI 81
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
G K + + I+ + D++ + + D+++++E V + V + G+V + ++
Sbjct: 82 YGESEKLLYSERIIADIDLSQVRRQVALLFPDTSVKIESVGNQVAVSGIVNSERERDDIY 141
Query: 162 ELSETFLSQSGRNQYANSSS------------------------KKVMNLLNIAGEDQVT 197
L T L + ++ ++ L +A QV
Sbjct: 142 RLVATLLGREKLEKWDKVQKLKFQNDNISIEEPESMIFERNMTWDGIIERLEVATVQQVN 201
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
+K+++A+V + +G S G++ G + +
Sbjct: 202 VKISVAQVTERFAETVGVDWSSFGANVGQF-------------------LFQQFEAADLT 242
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
T++ AL + LAEP LT ISG+SASF GG+ + S+ ++T ++G+ L
Sbjct: 243 TLITALGNENVAQVLAEPNLTVISGESASFLVGGEVPV--IVSTNNNVNITFKEFGIKLD 300
Query: 318 FTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
T VL+ +I +++ EVSE I ++P R+A TT+EL G + VL GL+
Sbjct: 301 LTAKVLTEEKIRMQLFPEVSEIERYIRAAGIEVPQLATRRAMTTIELGDGDSFVLGGLMS 360
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
+ + PL+ IP+LGA FR S +R TE+ I AT LVKP+ +D+ P
Sbjct: 361 SADFEEIQKTPLIGDIPVLGAAFRKSSTDRRRTELIIVATVNLVKPMKRKDIQLP 415
>gi|116620532|ref|YP_822688.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116223694|gb|ABJ82403.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 529
Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats.
Identities = 95/418 (22%), Positives = 178/418 (42%), Gaps = 32/418 (7%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
G GK + + + K +I+ P+++Q + V++ + V +P+ + + GK G
Sbjct: 50 ASQDVQPAPGPGK-LMVTVGKSLIIDSPMNIQRISVANGELIEAVAVNPKEVLINGKAAG 108
Query: 96 QANVILIGHDGKQMLN--LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
+ +I+ G ++L + + + L R D I V ++ + G V+
Sbjct: 109 ETTLIIWQQGGNRLLYDLTVRISPVRLDVVRQQLARDFPDDEINVTYDNEVAFVRGRVKD 168
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRDIL 210
+ + R + ++ + K +NLL + Q+ L V A V R
Sbjct: 169 LSAADRVMAIAASL--------------GKTVNLLRVDVPPVETQILLHVRFANVDRGAS 214
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----GDFSVKGVLDRFSFETVLHALER 265
+G + + + + ++G ++ + + ALE
Sbjct: 215 TDLGVSLATGAFNQSTAITTGQYPPPTVGTDGRVSISDALNILLFRKDINLGATIKALES 274
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVL 323
+ TLAEP + AI+G+ A+F +GG+ V GA S+T ++G+ ++F P +
Sbjct: 275 KRMLETLAEPNVMAINGKPAAFIAGGEFPVPMVQGGGLAGAVSITFREFGIRINFLPKIT 334
Query: 324 SPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
G I L + EVS + +P+ R+ T VEL +G + V+AGLL +
Sbjct: 335 PRGTIQLAVAPEVSSLDYSNAVTFQGYTIPALATRRIQTEVELETGQSFVIAGLLDNRTT 394
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ IP LS IP+LG LF++ + TE+ + TP +V+P+ P + +V
Sbjct: 395 ETLNKIPGLSNIPLLGKLFQSRAVAKNNTELMVIVTPEIVRPIQAGQ-PLPSLNMTVP 451
>gi|172060495|ref|YP_001808147.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
gi|171993012|gb|ACB63931.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
Length = 461
Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats.
Identities = 108/448 (24%), Positives = 169/448 (37%), Gaps = 45/448 (10%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQA 97
I + + + +Q V V DPT ADV++ + L K G
Sbjct: 36 ASIASASGTIELAVGAQRQISAGRALQRVAVGDPTIADVLIMKGSRSGSVLLTAKAPGAT 95
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
NV+L + I + ++ + S +V+ T VL G T+
Sbjct: 96 NVMLWERGHDEPTVWSIEV------VDAAAHAVLDGSMPQVKAYGGTSVLRGTSATLDAH 149
Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
+RA +++ + + + K V+ + E R +LKQ+GF
Sbjct: 150 ERAATVAKNMSPKGTVIDRSTLAGKSVVQVDVRVV-----------EFSRSVLKQVGFNF 198
Query: 218 ---------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
+ + G A F++ L
Sbjct: 199 FKQSNGFSFGSFSPGGVQSYNGGSGPGTAGYIPALGAPVASAFNLVVNAAGRGIFADLSL 258
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
LE R LAEPTL A+SGQSASF +GG+ G+T++ YGV L TPTV
Sbjct: 259 LEANNMARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTV 317
Query: 323 LSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
L P RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+
Sbjct: 318 LGPNRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQT 377
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
+PLL +PI+G F+N + + + E+ I TP LV P+A +
Sbjct: 378 MSNVSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PG 432
Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+ V + Y AS +
Sbjct: 433 ELSEQRDGPVWRSYLGGAASPDAAPGFS 460
>gi|78066131|ref|YP_368900.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
gi|77966876|gb|ABB08256.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
Length = 443
Score = 243 bits (619), Expect = 7e-62, Method: Composition-based stats.
Identities = 121/469 (25%), Positives = 186/469 (39%), Gaps = 49/469 (10%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L +++ L + AA IS+ + L +Q V V DP+
Sbjct: 5 LIGLAIALSALAMPPLSGAA---------DTSGTISLAVGAQRQLATGRALQRVAVGDPS 55
Query: 76 KADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
ADV+V + L K+ G NV++ + ++ + A R +
Sbjct: 56 VADVMVVKGGRGGVLLIAKSAGATNVMIWERGHDEPTVYNVSVTSGAA------RALLDG 109
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
V T V+ G ++ QRAV ++T + G A++ S K + +++
Sbjct: 110 GTSSVNTYGGTTVIGGASGSLDGHQRAVHAAKTVSGKDGTTIDASTISGKNVVQVDVRVV 169
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--------- 244
E R +LKQ G + S GG
Sbjct: 170 ----------EFSRSVLKQAGLNFFKQSNGFSFGAFAPTGLTSITGSPGGALTYNTNVPI 219
Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
F++ L LE R LA+PTL A+SGQSA+F +GG+ V S
Sbjct: 220 SSAFNLVVNSVSHGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VPQS 278
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKAD 357
G S+ YGV L TPTVL+P RI L++ E S+ I +N +P+ R+AD
Sbjct: 279 LGTISIEWKPYGVGLTVTPTVLNPRRIALKVAPESSQLDFVHSITINGVQVPALTTRRAD 338
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TTVEL G + V+ GL+ + +P L +PI+GA F+N + + + E+ I TP
Sbjct: 339 TTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQSDKELVIIVTPH 398
Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
LV P+A S P + + V + Y AS G +
Sbjct: 399 LVAPIAQGA-SLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442
>gi|218459699|ref|ZP_03499790.1| cpaC pilus assembly Q protein [Rhizobium etli Kim 5]
Length = 409
Score = 243 bits (619), Expect = 7e-62, Method: Composition-based stats.
Identities = 110/416 (26%), Positives = 187/416 (44%), Gaps = 32/416 (7%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
+R T L + + L P A+ S + +++ N+ + L
Sbjct: 6 RRIARTKSLAALAAVFSACVCLGPGFAGFASAQEKSVTLGKSVQHVTLPPNETLTLNTGQ 65
Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
D+++ DVV S R++++ GK +G N+ + G D + +DI + D + +
Sbjct: 66 PFGDLVIGSADMIDVVPLSDRSLFVRGKKIGATNISVYGDDKSLLGVIDIRVASDFSEVA 125
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
+R + +RV +D + L G+VR + QR +E+++++ S + V
Sbjct: 126 SAIRSAAPSARVRVVNSNDRIRLVGVVRDGIELQRVLEIAQSY------------SEQPV 173
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------- 235
+N L ++ QV L+V I E R + +G S GS+ + +
Sbjct: 174 LNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGQGSNGIGKATTSQGITVNDDGNLAR 233
Query: 236 ---------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ G + + + + V++ALE+ +R LA+P L A+SG +AS
Sbjct: 234 TLLDPKGAATGMLPFGQLIAKVLQISGGNIDVVINALEQKGLVRRLAQPNLIAMSGSTAS 293
Query: 287 FTSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
F +GG+ T + +T AT +GV L F P VL G I L I+ EVSE +N
Sbjct: 294 FHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGVINLEIEPEVSELDPAIN 353
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
P + R A TTV L G + +AGLL+ + + +P L +IP+LGALFR+
Sbjct: 354 VNGNPGFISRAASTTVALRDGQSFAMAGLLQSINAKDIQQLPGLGQIPVLGALFRS 409
>gi|163801677|ref|ZP_02195575.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
gi|159174594|gb|EDP59396.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
Length = 456
Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats.
Identities = 106/406 (26%), Positives = 184/406 (45%), Gaps = 47/406 (11%)
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
SI LN + V + V +S+P AD V + T+ +F K VG + +++ G + +L
Sbjct: 34 SITLNDGKHISVKQPIGKVFISNPDIADYKVINDTTLVVFAKGVGHSRLLVYGANEDVLL 93
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
+ I+++ D+ + L+ D+ + V+ V + V + G+V + + L L +
Sbjct: 94 SDRIIVDLDLTQIRRQLKFHFPDAKVTVQSVGEQVAVSGVVDSEETRDAIYRLVANLLGR 153
Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
++ +SS + ++ + +A QV +K+++A+V
Sbjct: 154 EKTEKWESSSKRSFKSDHGTFEEPESMIFARNMTWEGIIEQIQVATTQQVNVKISVAQVT 213
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
K +G + GSS G V D + T++ AL
Sbjct: 214 ESFGKTVGVDWNSVGSSVGGF-------------------VFDQFDAANLSTLITALGND 254
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
LAEP LT +SG+SASF GG+ ++ T+++ ++G+ L VLS
Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPVIISDANG--TNISFKEFGIKLDLAAKVLSQD 312
Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I +++ EVSE + +P R+A TTVEL G + +L GL+ + +
Sbjct: 313 KIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
IP + IPILGA FR + R+ TE+ I AT LV+P+ +D+ P
Sbjct: 373 IPFIGDIPILGAAFRRATTERKRTELIIVATVNLVEPIKPKDVHLP 418
>gi|261856884|ref|YP_003264167.1| type II and III secretion system protein [Halothiobacillus
neapolitanus c2]
gi|261837353|gb|ACX97120.1| type II and III secretion system protein [Halothiobacillus
neapolitanus c2]
Length = 443
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 95/423 (22%), Positives = 159/423 (37%), Gaps = 30/423 (7%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
+V S +++ + ++ P + V V + +V V R M +
Sbjct: 22 SVPVFSADAPALPDAVTMYAGQALVRSAPGSLLRVAVGNGKLVEVRVLGRRQMVIIANQA 81
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRT 153
G ++ L DG + ++ + + +R + S + V V VVL G+ T
Sbjct: 82 GDTSLQLWMRDGSRRSIDLHIVSGNTDQVAELVRTLLKASKAVSVNTVGGNVVLSGVNLT 141
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+D + + + + Q + + V +KV I E + L QI
Sbjct: 142 QEDVAQIAAIKKVYPQVLDFTQANA-----------VQMKPMVMMKVRIMEFDKSALHQI 190
Query: 214 GFQHSITGSSSGP-----------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
G + G S G + + S
Sbjct: 191 GIKWDSVIDGPGGALAHDFASNSLYRMTPSSFGGIGANGAVNLPLSLSGTPAFFGLVTSI 250
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
+ ++ + + LA P L A SG +A F GG+ G TSV YG+ L
Sbjct: 251 TSKINLMMQTGNAWELATPQLAARSGGTADFLVGGEVPIPIA-QGLGQTSVEYKPYGIKL 309
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
H P V S G I I+ E+S V P + RKA T V + G TIV++GL+
Sbjct: 310 HIEPVVSSTGDISTTIKAEISHIDPSVTVQGYPGFLTRKASTEVNVHEGQTIVISGLVDS 369
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
+ + +P L +IP+LG LFR+ F + +++ I TP+LV P A + + +
Sbjct: 370 SASKTIDKVPGLGQIPVLGELFRSRDFKSKRSDLVIFVTPYLVTPDAPLNKALISKSNKL 429
Query: 437 EDD 439
D+
Sbjct: 430 ADE 432
>gi|322434104|ref|YP_004216316.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX9]
gi|321161831|gb|ADW67536.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX9]
Length = 484
Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats.
Identities = 111/503 (22%), Positives = 194/503 (38%), Gaps = 64/503 (12%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVA------------KLPPIKEANAAVINISDVEIGKGK 48
M +R T L ++ A+ A + ++G +
Sbjct: 1 MNVKKRIPLTSFVPALLLLAGTLPFNPCSAFAQSVQAPGDSPTAHEARKRMDMHDMGGDE 60
Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
+ + + ++L +++ + V +PT P + L K G +++++ G+
Sbjct: 61 TLHLLVGHSMVLHSTSNIKRIFVGNPTVLQSYTGGPSEIVLTAKATGVSSLVVWDTQGQS 120
Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
L I + D L+ ++ S I V + L G V T + S A +L+ ++
Sbjct: 121 CL-YTIAADMDPETLQRSMHDAYPKSQIDVGGHEGRIFLSGTVPTQEASDNAFKLASSYS 179
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
V+N + + QV LK+ I EV R ++Q G +S+
Sbjct: 180 KD-------------VVNSIRVVTIHGKQVQLKLRIVEVDRTKMEQFGINLFRPTASNAV 226
Query: 227 SKSFAADFGG------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
F ++ + + LE+
Sbjct: 227 GGLTTGQFPSLATYATGTPATATAPAVPATINVNNPLNFFIYSFSHEIGATIQDLEQKQI 286
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLS 324
++ LAEPTLTA+SGQSA F SGG+ + V A +++ YGV + FTPTV
Sbjct: 287 LQVLAEPTLTAMSGQSAKFLSGGEFPFPVVQGGGSAAGVAITISFRPYGVKVDFTPTVNE 346
Query: 325 PGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
G I L++ EVS + ++ +P+ R+A+T VE+ +G T L GLL +
Sbjct: 347 DGSIHLKVAPEVSTLDFSNAVTISGFTIPALSTRRAETEVEILNGQTFALTGLLDHRTTE 406
Query: 381 LKEGIPLLSKIPILGALF-RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV--- 436
IP +S++PILG LF + E+ + T +V P L++P D
Sbjct: 407 SLSQIPGISRLPILGKLFATTKSYTHSVIELVVLVTANVVDP-----LTQPTDTTQPDMA 461
Query: 437 -EDDAKAFFFNRVNKIYGPKEAS 458
+ K+ F N ++K +
Sbjct: 462 VPNLDKSVFDNDLSKEQKLPKKP 484
>gi|156977409|ref|YP_001448315.1| Flp pilus assembly protein, secretin CapC [Vibrio harveyi ATCC
BAA-1116]
gi|156529003|gb|ABU74088.1| hypothetical protein VIBHAR_06196 [Vibrio harveyi ATCC BAA-1116]
Length = 456
Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 105/406 (25%), Positives = 183/406 (45%), Gaps = 47/406 (11%)
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
SI L+ + + + V +S+P AD V + T+ +F +GQA +I+ G D +L
Sbjct: 34 SITLHDGQHISLKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQARLIVYGIDEDVLL 93
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
+ I+++ D+ + ++ D+ + V+ + + V + G V + + L T L +
Sbjct: 94 SDRIIVDLDLTDVRRQIKFNFPDAKVTVQSIGEQVAVSGFVDSEETRDEIYRLVATLLGR 153
Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
++ + + ++ + +A QV +K+++A+V
Sbjct: 154 EKIKKWDKADKFEFKSDYAQYEAPEGMIFARNMSWRGIVERIEVATTQQVNVKISVAQVT 213
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
K +G S GSS G V D + T++ AL
Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
LAEP LT +SG+SASF GG+ + S+ +++ ++G+ L T VLS
Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPV--IISTNNNVNISFKEFGIKLDLTAKVLSKD 312
Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I +++ EVSE + +P R+A TTVEL G + +L GL+ + +
Sbjct: 313 KIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
IP + IPILGA FR + R+ TE+ I AT LV+P+ +D+ P
Sbjct: 373 IPFVGDIPILGAAFRKAMTERKRTELIIVATVNLVEPIKPKDVQLP 418
>gi|116626779|ref|YP_828935.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116229941|gb|ABJ88650.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 471
Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats.
Identities = 101/434 (23%), Positives = 183/434 (42%), Gaps = 42/434 (9%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L + A A A + + ++ + +L D+ V +S+P
Sbjct: 7 LLRAALISAVWAAGCFAQATKPQV--------RDFTLLEGRGELLTFQNDITKVAISEPK 58
Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
AD VV SPR + + K G+A +++ G + +I + +D +M + I +
Sbjct: 59 IADAVVISPREVMVNAKGPGRATLVVW-ETGLDPVRYEIAVTKDTTEWDMFTKSMIDSAG 117
Query: 136 --IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
I + DT+VL G+V++ D++R +++T A ++
Sbjct: 118 VPIHITGSGDTIVLSGVVKSADDAKRLAGMAQTRAKTVINLLQAPPPAE----------P 167
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----------AADFGGKFVSEG 242
Q+ L+V A + R L QIGF T + S G+ V+
Sbjct: 168 RQILLQVKFAAIDRVALTQIGFNLFSTNDKFIGASSTEQFSSPRFSQLQPTGTGQTVNFS 227
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
++ + + ALE ++ LAEP L + G+ A+F +GG Y T++++
Sbjct: 228 DLLNLFAFRPDLNIGATIKALEERNLLQILAEPNLLCLDGKEATFLAGGTFPYPTITTTP 287
Query: 303 GAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYR 352
+V +GV L F PTV G I L++Q EVS + + +P+
Sbjct: 288 TGGATAPVITVQFKPFGVKLDFQPTVTPQGSIDLKVQPEVSSLDYANAVTLQGFVIPALS 347
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R+A+T + L G + +AGL+ + + + +P L +P+LG +FR+ + E+ +
Sbjct: 348 QRRAETEIILKDGESFAIAGLIDNRVIETLSKVPGLGDLPVLGKIFRSRSTQKSADELLV 407
Query: 413 AATPFLVKPVAMRD 426
TP VKP+ +
Sbjct: 408 VVTPHFVKPLTPEE 421
>gi|161524905|ref|YP_001579917.1| type II and III secretion system protein [Burkholderia multivorans
ATCC 17616]
gi|189350345|ref|YP_001945973.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
gi|160342334|gb|ABX15420.1| type II and III secretion system protein [Burkholderia multivorans
ATCC 17616]
gi|189334367|dbj|BAG43437.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
Length = 443
Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats.
Identities = 107/445 (24%), Positives = 167/445 (37%), Gaps = 45/445 (10%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH---SPRTMYLFGKNVGQANVI 100
I + + + +Q V V DP ADV++ ++ L K G NV+
Sbjct: 21 ASASGTIELAVGAQRQISAGRPLQRVAVGDPAIADVLIMKGSRSSSVLLIAKAPGATNVM 80
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
L + + + ++ + DS RV T VL G ++ +RA
Sbjct: 81 LWERGRDEPTVWSVEV------VDAAAHAVLDDSAPRVNAYGGTAVLRGTSASLDAHERA 134
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
V + + + + + K V+ + E R +LKQ+GF
Sbjct: 135 VAVGKNMAGKGAVIDRSTLAGKSVVQVDVRVV-----------EFSRSVLKQVGFNFFKQ 183
Query: 221 GSSSGPSKSFAAD---------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ + F++ L LE
Sbjct: 184 SNGFSFGSFLPSGVQSFGGGSGPGSAGYIPTLGSPVASAFNLVVNAAGRGIFGDLSLLEA 243
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
R LAEPTL A+SGQSASF +GG+ G+T++ YGV L TPTVLSP
Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTVLSP 302
Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+
Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
+PLL +PI+G F+N + + + E+ I TP LV P+A +
Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPAT-----PGELS 417
Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
V + Y AS +
Sbjct: 418 EQRDGPVWRSYLGGVASPDAAPGFS 442
>gi|206559894|ref|YP_002230658.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|198035935|emb|CAR51827.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 443
Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats.
Identities = 121/469 (25%), Positives = 189/469 (40%), Gaps = 49/469 (10%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L +++ L ++AA IS+ + + +Q V V DP+
Sbjct: 5 LIGLAIALSALAMPPLSDAA---------DTSGTISLAIGAQRQIATGRALQRVAVGDPS 55
Query: 76 KADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
ADV+V + L KN G NV++ + ++ + A R +
Sbjct: 56 VADVLVVKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVTSGAA------RALLDG 109
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
++ V T V+ G T+ QRAV ++T + G A++ S K + +++
Sbjct: 110 TSPSVNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTTLDASTISGKNVVQVDVRVV 169
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--------- 244
E R +LKQ G + + GG
Sbjct: 170 ----------EFSRSVLKQAGLNFFKQSNGFSFGAFAPTGLTSISGTPGGSLTYNTSVPI 219
Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
F++ L LE R LA+PTL A+SGQSA+F +GG+ V S
Sbjct: 220 SSAFNLVVNSVSRGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VPQS 278
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKAD 357
G S+ YGV L TPTVLSP RI L++ E S+ I +N+ +P+ R+AD
Sbjct: 279 LGTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRRAD 338
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TTVEL G + V+ GL+ + +P L +PI+GA F+N + + + E+ I TP
Sbjct: 339 TTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVTPH 398
Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
LV P+A P + + V + Y AS G +
Sbjct: 399 LVAPIAQGA-PLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442
>gi|187926427|ref|YP_001892772.1| type II and III secretion system protein [Ralstonia pickettii 12J]
gi|241665914|ref|YP_002984273.1| type II and III secretion system protein [Ralstonia pickettii 12D]
gi|187728181|gb|ACD29345.1| type II and III secretion system protein [Ralstonia pickettii 12J]
gi|240867941|gb|ACS65601.1| type II and III secretion system protein [Ralstonia pickettii 12D]
Length = 454
Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats.
Identities = 101/438 (23%), Positives = 181/438 (41%), Gaps = 41/438 (9%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
+ + + AA ++ + E + + + +++ ++ + + +P A
Sbjct: 4 AAMVRGWMGGLALGCAAFVSSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIA 63
Query: 78 DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
D ++ R ++ + K G ANV++ G ++ ++ +
Sbjct: 64 DALLLKGRGTATSVLIIAKKPGAANVMVWTQGG-VATTYNVQVDAAAP---------VPG 113
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
+ V DT V+ G + L+ S + + V++ ++
Sbjct: 114 -DPAVVAQGDTAVVSGQPKD------VYALARARRSAAAASGAEKPKDGNVIDTTSMNVP 166
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSE------G 242
V + V + E + +LK+ GF + PS FG +S G
Sbjct: 167 GTVQVDVRVVEFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTESTMPIG 226
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F++ L LE R LAEP+L A+SGQSA+F +GG+ V +
Sbjct: 227 SAFNLLVSSVSKGLFADLSLLESNGMARVLAEPSLVALSGQSANFLAGGEIPIP-VPQAL 285
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADT 358
G T++ +G+ L +PT+LS RI L++ E S+ + +N +P+ R+ADT
Sbjct: 286 GTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADT 345
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TVEL G + V+ GL+ + +P L +PI+G F+ +N+EE E+ I TP L
Sbjct: 346 TVELGDGESFVIGGLVSRSTLSNVDKVPFLGDVPIIGTFFKRLNYNQEERELVIIVTPHL 405
Query: 419 VKPVAMRDLSRPDDHYSV 436
VKP+A P D
Sbjct: 406 VKPMARNA---PIDKMLP 420
>gi|107022594|ref|YP_620921.1| type II and III secretion system protein [Burkholderia cenocepacia
AU 1054]
gi|116689543|ref|YP_835166.1| type II and III secretion system protein [Burkholderia cenocepacia
HI2424]
gi|170732847|ref|YP_001764794.1| type II and III secretion system protein [Burkholderia cenocepacia
MC0-3]
gi|105892783|gb|ABF75948.1| type II and III secretion system protein [Burkholderia cenocepacia
AU 1054]
gi|116647632|gb|ABK08273.1| type II and III secretion system protein [Burkholderia cenocepacia
HI2424]
gi|169816089|gb|ACA90672.1| type II and III secretion system protein [Burkholderia cenocepacia
MC0-3]
Length = 443
Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats.
Identities = 121/469 (25%), Positives = 189/469 (40%), Gaps = 49/469 (10%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L +++ L ++AA IS+ + + +Q V V DP+
Sbjct: 5 LIGLAIALSALAMPPLSDAA---------DTSGTISLAIGAQRQIATGRALQRVAVGDPS 55
Query: 76 KADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
ADV+V + L KN G NV++ + ++ + A R +
Sbjct: 56 VADVLVVKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVTSGAA------RALLDG 109
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
++ V T V+ G T+ QRAV ++T + G A++ S K + +++
Sbjct: 110 TSPSVNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTTLDASTISGKNVVQVDVRVV 169
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--------- 244
E R +LKQ G + + GG
Sbjct: 170 ----------EFSRSVLKQAGLNFFKQSNGFAFGAFAPTGLTSITGTPGGSLTYNTSVPI 219
Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
F++ L LE R LA+PTL A+SGQSA+F +GG+ V S
Sbjct: 220 SSAFNLVVNSVSRGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VPQS 278
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKAD 357
G S+ YGV L TPTVLSP RI L++ E S+ I +N+ +P+ R+AD
Sbjct: 279 LGTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRRAD 338
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TTVEL G + V+ GL+ + +P L +PI+GA F+N + + + E+ I TP
Sbjct: 339 TTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVTPH 398
Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
LV P+A P + + V + Y AS G +
Sbjct: 399 LVAPIAQGA-PLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442
>gi|307944371|ref|ZP_07659712.1| putative type III secretion component [Roseibium sp. TrichSKD4]
gi|307772717|gb|EFO31937.1| putative type III secretion component [Roseibium sp. TrichSKD4]
Length = 411
Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats.
Identities = 98/398 (24%), Positives = 169/398 (42%), Gaps = 18/398 (4%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
I++ I+L+ V V + A+V + + +Y+ G G N+++
Sbjct: 15 SSSNAAPPINLTKGFGILLRFNEPVASVFIGSNEIAEVQAVNEKAIYVSGLTAGTTNLLV 74
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
+ +D + + I++ L I + ++ V+ +T ++ G V I D+
Sbjct: 75 MNYDNDIIRSHAIVVHPVNNETSYLLENLIPNGDVTVQSSGNTSIIRGNVDNIDDADDIR 134
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
E+ +KV++ + QV+LKV I E+ R L ++GF S
Sbjct: 135 EVKTRL----------EEQGRKVIDKTTTSTPVQVSLKVRIVELYRADLIKLGFDVSSVS 184
Query: 222 SSSGPSKSFAADFGGKFVSEGGD-------FSVKGVLDRFSFETVLHALERATAIRTLAE 274
S S + F+S + G + F+ +L LE+ I+ LAE
Sbjct: 185 SGSVFKVVTGSGIAQDFMSTLIGSVEGQTRVGISGANNSFNVNAMLDLLEKRGYIQILAE 244
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P LT ++G+ A+F SGG+ +V+ G + + G+ + F P +L +I + I +
Sbjct: 245 PRLTTVTGEKATFRSGGEF-AVSVNQGNGVFTAEYKETGISIDFIPEILPGDKISIDISS 303
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
E+ P+ VR T ++ SG T LAGL + K G P LSKIP+
Sbjct: 304 EIKFVDPQSVVNSAPALLVRSVQTNAQVASGQTFALAGLYQLTQSSSKSGPPYLSKIPVF 363
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
G L + +REE E+ TP+LV + +P D
Sbjct: 364 GNLLSKTNESREERELIFFITPYLVHSSVPIEKKQPTD 401
>gi|309778769|ref|ZP_07673542.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA]
gi|308922477|gb|EFP68101.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA]
Length = 454
Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats.
Identities = 100/438 (22%), Positives = 181/438 (41%), Gaps = 41/438 (9%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
+ + + AA ++ + E + + + +++ ++ + + +P A
Sbjct: 4 AAMVRGWMGGLALGCAAFVSSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIA 63
Query: 78 DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
D ++ R ++ + K G ANV++ G ++ ++ +
Sbjct: 64 DALLLKGRGTATSVLIIAKKPGAANVMVWTQGG-VATTYNVQVDAAAP---------VPG 113
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
+ V DT V+ G + L+ S + + V++ ++
Sbjct: 114 -DPAVVAQGDTAVVSGQPKD------VYALARARRSAAAASGAEKPKDGNVIDTTSMNVP 166
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSE------G 242
V + V + E + +LK+ GF + PS FG +S G
Sbjct: 167 GTVQVDVRVVEFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTESTMPIG 226
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F++ L LE R LAEP+L A+SGQSA+F +GG+ V +
Sbjct: 227 SAFNLLVSSVSKGLFADLSLLESNGMARVLAEPSLVALSGQSANFLAGGEIPIP-VPQAL 285
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADT 358
G T++ +G+ L +PT+LS RI L++ E S+ + +N +P+ R+ADT
Sbjct: 286 GTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADT 345
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TVEL G + V+ GL+ + +P L +P++G F+ +N+EE E+ I TP L
Sbjct: 346 TVELGDGESFVIGGLVSRSTLSNVDKVPFLGDVPVIGTFFKRLNYNQEERELVIIVTPHL 405
Query: 419 VKPVAMRDLSRPDDHYSV 436
VKP+A P D
Sbjct: 406 VKPMARNA---PIDKMLP 420
>gi|325518465|gb|EGC98164.1| pilus assembly protein [Burkholderia sp. TJI49]
Length = 429
Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats.
Identities = 106/445 (23%), Positives = 166/445 (37%), Gaps = 45/445 (10%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100
I + + + +Q V V DP ADV++ + L K G NV+
Sbjct: 7 ASASGTIELAVGTQRQISAGRSLQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGATNVM 66
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
L + + + ++ + DS RV T VL G ++ +RA
Sbjct: 67 LWERGRDEPTVWSVEV------VDAAAHAVLDDSTPRVNAYGGTAVLRGTSASLDAHERA 120
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
V + + + + + K V+ + E R +LKQ+GF
Sbjct: 121 VAVGKNMAGKGAVIDRSTLAGKNVVQVDVRVV-----------EFSRSVLKQVGFNFFKQ 169
Query: 221 GSSSGPSKSFAAD---------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ F++ L LE
Sbjct: 170 SNGFSFGSFSPGGVQSYGGGSGPGTAGYIPTLGSPVASAFNLVVNAAGHGIFGDLSLLEA 229
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
R LAEPTL A+SGQSASF +GG+ + G+T++ YG+ L TPTVLSP
Sbjct: 230 NNLARVLAEPTLVALSGQSASFLAGGEIPFP-SPQGLGSTAIQWKQYGIGLSLTPTVLSP 288
Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+
Sbjct: 289 QRIALKVAPESSQLDYVNSVTISGVSVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 348
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
+PLL +PI+G F+N + + + E+ I TP LV P+A +
Sbjct: 349 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPAT-----PGELS 403
Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
V + Y AS +
Sbjct: 404 EQRDGPVWRSYLGGVASPDAAPGFS 428
>gi|221213139|ref|ZP_03586115.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD1]
gi|221167352|gb|EED99822.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD1]
Length = 443
Score = 240 bits (611), Expect = 6e-61, Method: Composition-based stats.
Identities = 112/445 (25%), Positives = 173/445 (38%), Gaps = 45/445 (10%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100
G I + + + +Q V V DP ADV++ + + K G NV+
Sbjct: 21 ASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVM 80
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
L + ++ + ++ + DS RV T VL G ++ +RA
Sbjct: 81 LWERGRDEPTVWNVEV------VDAAAHAVLDDSTPRVNTYGGTSVLRGTAASLDAHERA 134
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217
V + + + + + K V+ + E R +LKQ+GF
Sbjct: 135 VAVGKNVSGKGAVIDRSTLAGKNVVQVDVRVV-----------EFSRSVLKQVGFNFFKQ 183
Query: 218 --SITGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETVLHALER 265
+ S P + + G S G F++ L LE
Sbjct: 184 SNGFSFGSFSPGGVQSYNGGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEA 243
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
R LAEPTL A+SGQSASF +GG+ G+T++ YGV L TPTVLSP
Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTVLSP 302
Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+
Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
+PLL +PI+G F+N + + + E+ I TP LV P+A
Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPAT-----PGQLS 417
Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
V + Y AS +
Sbjct: 418 EQRDGPVWRSYLGGAASPDAAPGFS 442
>gi|221197781|ref|ZP_03570827.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD2M]
gi|221204661|ref|ZP_03577678.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD2]
gi|221175518|gb|EEE07948.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD2]
gi|221181713|gb|EEE14114.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD2M]
Length = 443
Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats.
Identities = 112/445 (25%), Positives = 173/445 (38%), Gaps = 45/445 (10%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100
G I + + + +Q V V DP ADV++ + + K G NV+
Sbjct: 21 ASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVM 80
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
L + ++ + ++ + DS RV T VL G ++ +RA
Sbjct: 81 LWERGRDEPTVWNVEV------VDAAAHAVLDDSTPRVNTYGGTSVLRGTAASLDAHERA 134
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217
V + + + + + K V+ + E R +LKQ+GF
Sbjct: 135 VAVGKNVSGKGTVIDRSTLAGKNVVQVDVRVV-----------EFSRSVLKQVGFNFFKQ 183
Query: 218 --SITGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETVLHALER 265
+ S P + + G S G F++ L LE
Sbjct: 184 SNGFSFGSFSPGGVQSYNGGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEA 243
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
R LAEPTL A+SGQSASF +GG+ G+T++ YGV L TPTVLSP
Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTVLSP 302
Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+
Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
+PLL +PI+G F+N + + + E+ I TP LV P+A
Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPAT-----PGQLS 417
Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
V + Y AS +
Sbjct: 418 EQRDGPVWRSYLGGAASPDAAPGFS 442
>gi|116694140|ref|YP_728351.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16]
gi|113528639|emb|CAJ94986.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16]
Length = 470
Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats.
Identities = 91/417 (21%), Positives = 166/417 (39%), Gaps = 40/417 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR---TMYLF 90
A E +++ + ++ V+ V V +P AD +V R ++ L
Sbjct: 33 ALAPRAQAQEAVNARQLRLLAGAQKEIRSAQPVERVAVGNPAVADALVLRTRGAPSVLLV 92
Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
K G +V++ G + L ++ ++ + ++ + + G
Sbjct: 93 AKQPGVTDVMVWTRGGAEPLTYNVQVDAIAPDAD----------GAKLGYSAAGATITGQ 142
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
+ +++ + V++ + V + V + E+ + +L
Sbjct: 143 SPDAYAAA-----RAQAAARAATTGKTDGKPGLVVDRSTVPLSGTVQVDVKVVEISKTVL 197
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---------------- 254
K++G S + + G +
Sbjct: 198 KEVGINFFRNNSGFAFGTFSPSTLNKFTFTPGSGGAPGSFSADIASPMSNAFNLVAASLT 257
Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+ LE R LAEP+L A+SGQSASF +GG+ V + G T++ +G
Sbjct: 258 HGIFANISLLEANGLARVLAEPSLVALSGQSASFLAGGEIPIP-VPQALGTTTIQFKPFG 316
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369
+ L +PTVLS RI L++ E S+ +N +P+ R+ADTTVEL G + V
Sbjct: 317 IGLTVSPTVLSADRIALKVAPEASDLDPSRGISINGAVVPAIVTRRADTTVELGDGESFV 376
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+ GL+ + +P+L +P++GA F+N F++E+ E+ I TP LVKP+A
Sbjct: 377 IGGLVSRNTVSNVNKVPVLGDLPVIGAFFKNLNFHQEDRELMIVVTPRLVKPLAKGA 433
>gi|163857691|ref|YP_001631989.1| putative Flp pilus assembly secretin [Bordetella petrii DSM 12804]
gi|163261419|emb|CAP43721.1| putative Flp pilus assembly secretin [Bordetella petrii]
Length = 464
Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats.
Identities = 109/478 (22%), Positives = 185/478 (38%), Gaps = 35/478 (7%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
+++ + + ++ P + A + + IS+ + +L +
Sbjct: 4 WMKPRMRASLLCTVLATAGVFYGAPVAGQ--ARPAEPAAAAPAASQDISLAVKGQQLLPL 61
Query: 63 PVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
P + V+DP ADV V P + L GK+ G V + + + + +
Sbjct: 62 PGTPTRIAVADPDVADVKVLPAAAGRPAAVMLIGKSAGTTQVQVWARNSRSPATWTVHVT 121
Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
+ + L+R V++ V+ G + Q +V + + A
Sbjct: 122 GPV---QAELQRRGQAGGANVDVAGTHAVVSGHAPSALSHQNSVAAAAASVGDKNVVDVA 178
Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----AD 233
+ S V+ + E R ++KQ+G + G + +
Sbjct: 179 TAGSGGVVQVEVKVVEV-----------SRSVMKQVGLSMTGNAGGWGFGSRTSPDGFST 227
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
G + D F L L+ R LAEPTL A+SGQSASF +GG+
Sbjct: 228 PGTLNPRGVLSDGFNLLFDSNHFGATLRMLQSNGMARVLAEPTLVALSGQSASFLAGGEI 287
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--------IGVNA 345
G +V +G+ L TPTVLS RI L++ E SE G A
Sbjct: 288 PIPES-GGLGTQNVVFKPFGIGLTVTPTVLSRDRIALKVAPEASELDYVNGIPILNGETA 346
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P+ R R+ADT +EL G + V++GL+ + +P L ++PI+GA FR +++
Sbjct: 347 TLIPALRTRRADTMIELGDGESFVISGLVSRQTKASVNKVPFLGELPIIGAFFRGIEYSQ 406
Query: 406 EETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
EE E+ I TP LV+P+A L P + D + + G ++
Sbjct: 407 EEHELVIVVTPRLVRPIARGVALPLPGERQERPDSITNAWGYYLMGPAGGQQVPGFSR 464
>gi|283778969|ref|YP_003369724.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
gi|283437422|gb|ADB15864.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
Length = 684
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 105/510 (20%), Positives = 186/510 (36%), Gaps = 63/510 (12%)
Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
+A P E + +I + + L + IL + + + D + A V
Sbjct: 138 MANPVPTAEVSQRFDRFIQRKIDPENTLEVILGRPRILVFNETPKRIYLPDESIAAFQVI 197
Query: 83 SPRTMYLFGKNVGQANVILI---GHDGKQMLNLDILIERDIAHLEMTL-----------R 128
R + + G++VG + L GK+++ ++ L+ L
Sbjct: 198 DDRQISIVGRSVGSTALNLWVIDPETGKEIVLSYLVKVLPEPQLKERLEAVYAGLEREIN 257
Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS--------- 179
+ S I++ ++ D + + G ++ + +++ ++++
Sbjct: 258 QAFPRSKIQLSLIGDQLAVRGQAHDAVEANQILQIVARHSPTKSQDEFGRPVQYVQQAAF 317
Query: 180 --------------------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ ++NLL I GE QV L+VT+AEV R + I
Sbjct: 318 IDQQRDPLVDQDQAFLRQTVVDSALLARSGIINLLQIPGEQQVMLRVTVAEVNRTAARSI 377
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S+ ++ G + G +V LD ++AL +TLA
Sbjct: 378 GLNFSVQ-NNQGTTVFQNLTGQLGAAGGGNLSNVLASLDNGQVILAINALRSLRLAKTLA 436
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLR 331
EP LT ++GQ A+F +GG + G +GV + FTP V+ RI L+
Sbjct: 437 EPNLTTLNGQQATFRAGGSFPVPQIGGLGGTGLQGTVFVPFGVSIEFTPYVIDRDRIRLK 496
Query: 332 IQTEVSEPVIGVNA----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ VS + + R D+TVEL G T+ +AGL++ ++
Sbjct: 497 LSAGVSVRDESLGTSIGGSAGAGGTQVAGLNSRTFDSTVELREGQTLAVAGLIQTNMGAD 556
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSVEDDA 440
+ +P +PI+G SR E E+ I TP LV P+ D P D
Sbjct: 557 SDRVPFWGDLPIIGHTGGFSRTTAGEQELVILVTPELVHPLEACDTPSLPGADVFETGDI 616
Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
+ + N + S V + G
Sbjct: 617 EFYLGNHLEARRMRDYRSTVRTDFARIRAG 646
>gi|91775995|ref|YP_545751.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
gi|91709982|gb|ABE49910.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
Length = 453
Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats.
Identities = 104/425 (24%), Positives = 181/425 (42%), Gaps = 40/425 (9%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
++I + + + + + V +Q V V++P V + SP+TM + K VG + L
Sbjct: 27 AEEIMVSMGQQRLYEHTVTLQRVAVANPEVLAVTLTSPKTMMIVPKAVGATEISLWDSQS 86
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
Q + + LE + + ++VE + + L G R++++ RA+E +
Sbjct: 87 VQPSRVLQVSVTPSLALEGQGLKAADAAGLQVEAAGNGLALSGEARSLEEHARALESLQK 146
Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--- 223
+ + S V + + + EV R + GF S+
Sbjct: 147 ERQGALDVTSSEFDSH-------------VQIDIKVVEVSRQNAMRFGFLMGKNNSASRD 193
Query: 224 --------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
S F F+ F+V L LE
Sbjct: 194 GFGIVASPNSFSGVEAGSGGFDFSSTSGFLPVLNAFNVVFGNHGSGLLGTLSILEGNGFA 253
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGR 327
TLAEP+L+AISGQ+A+F +GG+ + +++T +YGV L TPT+LS R
Sbjct: 254 YTLAEPSLSAISGQTATFLAGGEFPVPIRTGGGSDSAITIRYKEYGVRLMLTPTILSGER 313
Query: 328 IGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
I L++ EVSE + +P +VR+ +T+V L +G + V++G++ + +
Sbjct: 314 IFLKVAPEVSELDFANAVQTGGVAVPGLKVRRTETSVSLGNGESFVISGMVSRNTINNID 373
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDD 439
+P L IPI+GA F + RF+RE+ E+ + TP LV+P+A + P
Sbjct: 374 KVPGLGNIPIIGAFFSSKRFDREDKELLMVVTPRLVRPIARNAELPALPGSELKHYKPSF 433
Query: 440 AKAFF 444
++ F
Sbjct: 434 SEFFL 438
>gi|238762407|ref|ZP_04623378.1| Type II/III secretion system protein [Yersinia kristensenii ATCC
33638]
gi|238699392|gb|EEP92138.1| Type II/III secretion system protein [Yersinia kristensenii ATCC
33638]
Length = 379
Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats.
Identities = 96/372 (25%), Positives = 171/372 (45%), Gaps = 25/372 (6%)
Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
++ ++ K G A IL + + + +L+ I ++ +S+I + +
Sbjct: 1 MGKNSIIVYAKQEGTAEFILFNQNNQPIKKSAVLVNNTITAANKRIQIEYPESDIEINKI 60
Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQV 196
+ +L GM + + V + + + ++N + + G +QV
Sbjct: 61 GTSYILTGMAESEEAKDTIVSIIGEAIGSKKTIDTDSQYLNTPEYYGIINKIKLMGTNQV 120
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
+K+TIAEV +D + IG S G SG + + F + G
Sbjct: 121 NVKLTIAEVTKDFSENIGVDWSTIGDFSGSFQLVKLNSLNNFSARG-------------I 167
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
++HA+ + R LAEP L+ +SG+SASF GG+ V+++ +T +T ++G+ L
Sbjct: 168 SALVHAINDDSIARVLAEPNLSVLSGESASFLVGGEIPM--VNTTQNSTVITYKEFGIKL 225
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ V RI + + EVS PS+R RKA TT+EL G + +L GL
Sbjct: 226 NIGAKVNEKKRIRIMLDEEVSSIDKVFNIDGGNAYPSFRTRKAATTLELGDGESFILGGL 285
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
+ + ++ + IP + IPILGA FRN+ + +TE+ + AT LV+PV+ R++ P +
Sbjct: 286 ISNSERESLKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRPVSEREVELP--N 343
Query: 434 YSVEDDAKAFFF 445
+ + FF
Sbjct: 344 FMHTSTLERFFN 355
>gi|187923645|ref|YP_001895287.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
gi|187714839|gb|ACD16063.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
Length = 468
Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats.
Identities = 111/469 (23%), Positives = 186/469 (39%), Gaps = 41/469 (8%)
Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
S+ A +A A + I + + + V +Q V + DP+
Sbjct: 21 VSAATDAAGPAQRAQAAPAAQPHQAAFAPPAQGIDLTVGAQRQIAVGHTLQRVAIGDPSV 80
Query: 77 ADVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
ADV++ + L GK G N++L D L + + A +
Sbjct: 81 ADVLIIKGDKRGGVLLVGKAAGTTNLMLWSRDRDAPLQYTVNVTTPAAA------SLLGA 134
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
V+++ T ++ G T++ QRAV +E L + G ++ + + + +++
Sbjct: 135 DTPAVKVLGGTAIVSGTSATMEAHQRAVVAAEGSLGKDGAVFDTSTVASRAVVQVDVRVV 194
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------- 242
E R +LK++GF + + + G
Sbjct: 195 ----------EFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAGQAPSLTGVTPI 244
Query: 243 -GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
F++ L LE R LAEPTL A+SGQSASF +GG+ V +
Sbjct: 245 SSAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLAGGEVPIP-VPQA 303
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKAD 357
G+TS+ YGV L TPTVLSP RI L++ E S+ + ++ +P++ R+AD
Sbjct: 304 LGSTSIEFKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAFTTRRAD 363
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TTVEL G + V+ GL+ + +PLL +P++G F+ + + E E+ I TP
Sbjct: 364 TTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQNEKELVIIVTPH 423
Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
LV P+A + V + A+ +
Sbjct: 424 LVSPLARGATLPST-----PGEQSEQRNGPVWRSLIGGVAARDASPGFS 467
>gi|296158794|ref|ZP_06841623.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
gi|295890999|gb|EFG70788.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
Length = 474
Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 115/485 (23%), Positives = 195/485 (40%), Gaps = 49/485 (10%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGK--------KISIGLNKVIIL 60
+ + L + + + P AA + + +I++ + L
Sbjct: 11 AAWLGVALLAVSAATDAAGPAPRGQAAQAAQAAQAAQAAQPALAAPAQRIALTVGAQQQL 70
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
V +Q V + DP+ ADV++ + L GK G N++L D L + +
Sbjct: 71 AVGHTLQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVT 130
Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
A + V+++ T V+ G T++ QRAV +E L + G
Sbjct: 131 TPAAA------SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDGAVFDT 184
Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
++ + + + +++ E R +LK++GF + +
Sbjct: 185 STVASRAVVQVDVRVV----------EFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSV 234
Query: 238 FVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ G F++ L LE R LAEPTL A+SGQSA
Sbjct: 235 SATAGQAPSMTGVTPISSAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSA 294
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----I 341
SF +GG+ V + G+TS+ YG+ L TPTVLSP RI L++ E S+ +
Sbjct: 295 SFLAGGEVPIP-VPQALGSTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAV 353
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
++ +P++ R+ADTTVEL G + V+ GL+ + +PLL +P++G F+
Sbjct: 354 TISGVSVPAFITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQL 413
Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
+ + E E+ I TP LV P+A S P S + V + A+
Sbjct: 414 NYQQNEKELVIIVTPHLVSPLAKGA-SLP----STPGEQSEQRNGPVWRSLIGGVAARDS 468
Query: 462 GQNYK 466
+
Sbjct: 469 SPGFS 473
>gi|167570105|ref|ZP_02362979.1| type II/III secretion system protein [Burkholderia oklahomensis
C6786]
Length = 434
Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats.
Identities = 110/449 (24%), Positives = 174/449 (38%), Gaps = 40/449 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
V+ + I + + V +VQ V V DP ADV+V + L K
Sbjct: 7 VLLSFAARAAEMGTIELATGAQRQVSVGRNVQRVAVGDPNVADVLVVKGGRGSVLLVAKA 66
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G ++++ + + + A R + + V+ T V+ G T
Sbjct: 67 AGSTSLMVWERGRDEPAVYTVNVVSGAA------RALLDGGSPSVKAYGGTAVVSGSAAT 120
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ RA+ L + + G A++ K + +++ E R +LKQ
Sbjct: 121 LDAHARALALGKGMAGKDGGVVDASTVGGKNVVQVDVRVV----------EFSRSVLKQA 170
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLH 261
G + + F++ L
Sbjct: 171 GLNFFKQNNGFTFGAFAPSGLASVTGGATPSMSVSANIPISSAFNLVVGSATRGLFADLS 230
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT
Sbjct: 231 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 289
Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ +
Sbjct: 290 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRE 349
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +P L +PI+G F++ + + + E+ I TP LV P+A S P +
Sbjct: 350 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 404
Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+ V + Y S G +
Sbjct: 405 GELSEQRDGPVWRSYLGGALSPDAGPGFS 433
>gi|171317113|ref|ZP_02906316.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
gi|171097747|gb|EDT42574.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
Length = 443
Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats.
Identities = 107/450 (23%), Positives = 169/450 (37%), Gaps = 45/450 (10%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVG 95
I + + + +Q V V DP ADV++ + L K G
Sbjct: 16 TVASLASASGTIELAVGAQRQISAGRTLQRVAVGDPAVADVLIMKGSRSGSVLLTAKAPG 75
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
NV+L + + + ++ + + S RV T VL G ++
Sbjct: 76 ATNVMLWARGRDEPTVWSVEV------VDAAAQAVLDGSTPRVNAYGGTAVLQGTAASLD 129
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
RA + S+ V++ + G++ V + V + E R +LKQ+GF
Sbjct: 130 AHARASAV-----------GKNMSAKGNVIDRSTVVGKNVVQVDVRVVEFSRSVLKQVGF 178
Query: 216 QHSITGSSSGPSKSFAADF---------------GGKFVSEGGDFSVKGVLDRFSFETVL 260
+ F++ L
Sbjct: 179 NFFKQSNGFSFGSFSPGGVQSYSGGAGPGTGGYVPTLGSPVASAFNLVVNAAGRGIFADL 238
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
LE R LAEPTL A+SGQSASF +GG+ G+T++ YGV L TP
Sbjct: 239 SLLEANNLARVLAEPTLVALSGQSASFLAGGEIPVP-APQGLGSTAIQWKQYGVGLTLTP 297
Query: 321 TVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
TVL+P RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+
Sbjct: 298 TVLNPNRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDR 357
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
+PLL +PI+G F+N + + + E+ I TP LV P+A +
Sbjct: 358 QTMSNVSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVAPIAKGAVLPAT----- 412
Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+ V + Y AS +
Sbjct: 413 PGELSEQRDGPVWRSYLGGVASPDAAPGFS 442
>gi|167562915|ref|ZP_02355831.1| type II/III secretion system protein [Burkholderia oklahomensis
EO147]
Length = 432
Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats.
Identities = 110/449 (24%), Positives = 174/449 (38%), Gaps = 40/449 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
V+ + I + + V +VQ V V DP ADV+V + L K
Sbjct: 5 VLLSFAARAAEMGTIELATGAQRQVSVGRNVQRVAVGDPNVADVLVVKGGRGSVLLVAKA 64
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G ++++ + + + A R + + V+ T V+ G T
Sbjct: 65 AGSTSLMVWERGRDEPAVYTVNVVSGAA------RALLDGGSPSVKAYGGTAVVSGSAAT 118
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ RA+ L + + G A++ K + +++ E R +LKQ
Sbjct: 119 LDAHARALALGKGMAGKDGGVVDASTVGGKNVVQVDVRVV----------EFSRSVLKQA 168
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLH 261
G + + F++ L
Sbjct: 169 GLNFFKQNNGFTFGAFAPSGLASVTGGATPSMSVSANIPISSAFNLVVGSATRGLFADLS 228
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT
Sbjct: 229 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 287
Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ +
Sbjct: 288 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRE 347
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +P L +PI+G F++ + + + E+ I TP LV P+A S P +
Sbjct: 348 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 402
Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+ V + Y S G +
Sbjct: 403 GELSEQRDGPVWRSYLGGALSPDAGPGFS 431
>gi|254245567|ref|ZP_04938888.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia
PC184]
gi|124870343|gb|EAY62059.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia
PC184]
Length = 443
Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats.
Identities = 107/445 (24%), Positives = 170/445 (38%), Gaps = 45/445 (10%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100
I + + + +Q V V DP ADV++ + L K G NV+
Sbjct: 21 ASASATIELAVGAQRQISAGRTLQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGATNVM 80
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
L + ++ + ++ + + + RV T VL G +++ RA
Sbjct: 81 LWERGRDEPTIWNVEV------VDAAAQAVLDGAAPRVNAYGGTAVLQGSAASLEAHSRA 134
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + + V++ + G+ V + V + E R +LKQ+GF
Sbjct: 135 AAVGKNMSGKGV-----------VIDRSTVPGKSVVQVDVRVVEFSRSVLKQVGFNFFKQ 183
Query: 221 GSSSGPSKSFAADF---------------GGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ F++ L LE
Sbjct: 184 SNGFSFGSFSPGGVQSYSGGSGPGTGGYVPTLGSPVASAFNLVVNAAGRGIFADLSLLEA 243
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
R LAEPTL A+SGQSASF +GG+ G+T++ YGV L TPTVLSP
Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTVLSP 302
Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+
Sbjct: 303 SRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
+PLL +PI+G F+N + + + E+ I TP LV P+A + +
Sbjct: 363 VSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PGELS 417
Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
V K Y AS +
Sbjct: 418 EQRDGPVWKSYLGGAASPDAAPGFS 442
>gi|156975620|ref|YP_001446527.1| Flp pilus assembly protein secretin [Vibrio harveyi ATCC BAA-1116]
gi|156527214|gb|ABU72300.1| hypothetical protein VIBHAR_03353 [Vibrio harveyi ATCC BAA-1116]
Length = 449
Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats.
Identities = 112/405 (27%), Positives = 187/405 (46%), Gaps = 47/405 (11%)
Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
I ++ ++V + V VSDP D V + T+ +F K VGQA I+ G K +L+
Sbjct: 28 ITVSDGQHIEVKEPISTVFVSDPEIVDYNVVNENTVVVFAKEVGQARFIIYGKSKKVLLS 87
Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
I+++ D++ + ++ + NI+VE V + V + G+V + Q + T L +
Sbjct: 88 DRIIVDIDLSLVRRQIKLHYPELNIKVESVGNQVAVSGVVESEQQRDDIYRMVATLLGRD 147
Query: 172 GRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVRR 207
++ + + ++ L+ +A + QV +K+++A+V
Sbjct: 148 KTEKWEETQVLEFENEAYDIEEPQSMIFARNMTWEGILELIEVATDQQVNVKISVAQVTE 207
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ +G S G+ G + D T++ AL
Sbjct: 208 TFSQTVGVDWSSVGADVGEF-------------------LFQQFDAADLTTLITALGNEN 248
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
+ LAEP LT ISG+SASF GG+ + ++T ++G+ L T VL G+
Sbjct: 249 VAQVLAEPNLTVISGESASFLVGGEVPVIVT--TNNNINITFREFGIKLDLTAKVLHEGK 306
Query: 328 IGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
I +R+ EVSE I ++P + R+A TT+EL G + VL GL+ + + I
Sbjct: 307 IRMRLMPEVSEVERYIRSAGLEVPQFATRRAMTTIELGDGDSFVLGGLMSSADLEELKKI 366
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
PLL IP+LGA FR + +R TE+ I AT LVKP+ +D+ P
Sbjct: 367 PLLGDIPVLGAAFRKASTDRRRTELIIVATVNLVKPMKKKDIQMP 411
>gi|115351456|ref|YP_773295.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
gi|115281444|gb|ABI86961.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
Length = 444
Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats.
Identities = 102/447 (22%), Positives = 176/447 (39%), Gaps = 41/447 (9%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH---SPRTMYLFGKNVG 95
+ G I + + + +Q + V DP DV+V ++ L K G
Sbjct: 19 VLTEAAGTNASIDLAVGSQRQVAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPG 78
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
NV+L + ++ ++ + + S +V+ VL G ++
Sbjct: 79 STNVLLWERGRDEPTVWNV------NVVDAAAQAALDGSAPKVKGYGGAAVLSGSSASLD 132
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
+RAV + + + G A++ + + +++ E R +LK+ G
Sbjct: 133 AHERAVAVGKRMGGKDGTVIDASTVGNRSVVQVDVRVV----------EFSRSVLKEAGL 182
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLHAL 263
+ F+ G + + L
Sbjct: 183 NFFKQSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNISIL 242
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
E R LA+PTL A+SGQSASF +GG+ V + G+T++ YGV L TPTVL
Sbjct: 243 EANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIDWKQYGVGLTLTPTVL 301
Query: 324 SPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
S RI L++ E S+ + +N+ +P+ R+ADTTVEL G + V+ GL+ +
Sbjct: 302 SQHRIALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRETM 361
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
+P+L +PI+GA F++ + + + E+ I TP LV P+A P + +
Sbjct: 362 SNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVAPIAKGA-PLP----ATPGE 416
Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYK 466
V + Y AS +
Sbjct: 417 LSEQRDGPVWRSYLGGIASPDAAPGFS 443
>gi|83718419|ref|YP_443059.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|167582062|ref|ZP_02374936.1| type II/III secretion system protein [Burkholderia thailandensis
TXDOH]
gi|167620224|ref|ZP_02388855.1| type II/III secretion system protein [Burkholderia thailandensis
Bt4]
gi|257139289|ref|ZP_05587551.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|83652244|gb|ABC36307.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
Length = 441
Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats.
Identities = 112/449 (24%), Positives = 175/449 (38%), Gaps = 40/449 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
V+ + I + + V VQ V + DP+ ADVVV + L K
Sbjct: 14 VLLSFAARAAEMGTIELATGAQRQIAVGRGVQRVAIGDPSVADVVVIKGGRGGVLLVAKA 73
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G N+++ + + + A R + + V+ + T V+ G T
Sbjct: 74 AGSTNLMVWERGRDEPSVYTVNVASGAA------RALLDGGSPSVKAYNGTAVVSGSAAT 127
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ RA+ + + + G A++ K + +++ E R +LKQ
Sbjct: 128 LDAHARALAVGKGMAGKDGGVVDASTVGGKNVVQVDVRVV----------EFSRSVLKQA 177
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261
G + A SV + L
Sbjct: 178 GLNFFKQSNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 237
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT
Sbjct: 238 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 296
Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ +
Sbjct: 297 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRE 356
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +P L +PI+G F++ + + + E+ I TP LV P+A S P +
Sbjct: 357 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 411
Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+ V + Y S G +
Sbjct: 412 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 440
>gi|299069498|emb|CBJ40767.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
CMR15]
Length = 467
Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats.
Identities = 91/438 (20%), Positives = 171/438 (39%), Gaps = 40/438 (9%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
++ A + G+ + + +++ ++ + + +P A
Sbjct: 17 AAVVRGWMGALALGWVALAPAAHAQGMPAGQVLHLLSGSQREIRLGKPLERIAIGNPEVA 76
Query: 78 DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
D ++ ++ + K G AN+++ G + +
Sbjct: 77 DALLLKGHGAAGSLLIIAKKPGAANILVWTQGGTALTYNVQVDAEPRGA----------- 125
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
+ + + T VL G V+ L+ S + +++ +A
Sbjct: 126 GSPDLAVQGSTAVLTGQVKD------VYSLARARKSAAVAGGAEPPKGGNMIDNTTLAVP 179
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
V + V + E + +LK+ GF + T + V+ +
Sbjct: 180 GTVQVDVRVVEFSKTVLKEAGFIFTRTRGGFTFGSFSPSTLTQYTVTPTSLTTQSTTPIG 239
Query: 254 FSFETVLH-----------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+F ++ +E R LAEP+L A+SGQSA+F +GG+ V +
Sbjct: 240 TAFNLLISSFSKGIFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQAL 298
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADT 358
G T++ +G+ L +PT+LS RI L++ E S+ + +N +P+ R+ADT
Sbjct: 299 GTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADT 358
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TVEL G + V+ GL+ + +P L +PI+G F+ +N+EE E+ I TP L
Sbjct: 359 TVELGDGESFVIGGLVSRTTLSNVDKVPFLGDVPIIGTFFKRLDYNQEERELVIIVTPRL 418
Query: 419 VKPVAMRDLSRPDDHYSV 436
V+P+A P D
Sbjct: 419 VRPMARNA---PIDKMLP 433
>gi|170701752|ref|ZP_02892688.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
gi|170133335|gb|EDT01727.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
Length = 444
Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats.
Identities = 101/447 (22%), Positives = 176/447 (39%), Gaps = 41/447 (9%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH---SPRTMYLFGKNVG 95
+ G I + + + +Q + V DP DV+V ++ L K G
Sbjct: 19 VLTEAAGTNASIDLAVGSQRQIAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPG 78
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
NV+L + ++ ++ + + + +V+ VL G ++
Sbjct: 79 STNVLLWERGRDEPTVWNV------NVVDAAAQAALDGTGPKVKAYGGAAVLSGSSASLD 132
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
+RAV + + + G A++ + + +++ E R +LK+ G
Sbjct: 133 AHERAVAVGKRMGGKDGTVIDASTVGNRSVVQVDVRVV----------EFSRSVLKEAGL 182
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLHAL 263
+ F+ G + + L
Sbjct: 183 NFFKQSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNISIL 242
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
E R LA+PTL A+SGQSASF +GG+ V + G+T++ YGV L TPTVL
Sbjct: 243 EANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIDWKQYGVGLTLTPTVL 301
Query: 324 SPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
S RI L++ E S+ + +N+ +P+ R+ADTTVEL G + V+ GL+ +
Sbjct: 302 SQRRIALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRETM 361
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
+P+L +PI+GA F++ + + + E+ I TP LV P+A P + +
Sbjct: 362 SNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVAPIAKGA-PLP----ATPGE 416
Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYK 466
V + Y AS +
Sbjct: 417 LSEQRDGPVWRSYLGGIASPDAAPGFS 443
>gi|312882144|ref|ZP_07741893.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370190|gb|EFP97693.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122]
Length = 456
Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats.
Identities = 105/437 (24%), Positives = 188/437 (43%), Gaps = 63/437 (14%)
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
SI LN +QV + + V +S+P AD V + T+ ++ VGQ+ +I+ G D +L
Sbjct: 34 SITLNDGQHIQVNMPIGKVFISNPEVADYKVINENTLVVYANEVGQSRLIVYGTDSSVLL 93
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
+ I+++ +++ + L+ D ++V+ + V + G+V + + L T L +
Sbjct: 94 SDRIVVDLNLSEVRRQLKFHYPDVQVKVQSIGTQVAVSGVVDSEETRDDIYRLVATLLGR 153
Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
++ + ++ + + QV +K++IA V
Sbjct: 154 EKTEKWNQVEKLTFESENTRYEEPESMVFARNMTWEGIIERIKVTTTQQVNVKISIAHVT 213
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ +G G+ G V + + T++ AL
Sbjct: 214 ESFGQTVGIDWGSIGARVGSF-------------------VFDQFNAANLGTIISALGND 254
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+ LAEP LT +SG+SASF +GG+ + + +V+ +G+ L+ T VLS
Sbjct: 255 EIAQVLAEPNLTVLSGESASFLAGGEVPVIVL--NDRNLTVSFKQFGIGLNLTAKVLSRD 312
Query: 327 RIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I +++ VSE V +P + +RKA TTVEL G + +L GL+ + +
Sbjct: 313 KIQMQLAPSVSEVEGFVEFEGLKVPQFTLRKALTTVELSDGDSFILGGLMSSADFEEMQK 372
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP-------------- 430
+P++ IP+ GA FR ++ R+ TE+ I AT LV+PV D+ P
Sbjct: 373 VPVIGDIPLFGAAFRKAKTERKRTELIIVATVNLVEPVRPNDIQVPYINKTSTLERWLNI 432
Query: 431 --DDHYSVEDDAKAFFF 445
DD + DA
Sbjct: 433 NSDDSFQPSSDATIRLL 449
>gi|91783011|ref|YP_558217.1| putative outer membrane channel signal peptide protein, CpaC like
[Burkholderia xenovorans LB400]
gi|91686965|gb|ABE30165.1| Putative outer membrane channel signal peptide protein, CpaC like
protein [Burkholderia xenovorans LB400]
Length = 454
Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats.
Identities = 111/475 (23%), Positives = 191/475 (40%), Gaps = 41/475 (8%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
M+++ + A+ +A A ++I++ + L V +Q +
Sbjct: 1 MLAVSAATDAAGPAQRGQAAQAAQAAQAAQPTLAAPAQRIALTVGAQQQLAVGHTLQRIA 60
Query: 71 VSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
+ DP+ ADV++ + L GK G N++L D L + + A
Sbjct: 61 IGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVTTPAAA----- 115
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
+ V+++ T V+ G T++ QRAV +E L + G ++ + + +
Sbjct: 116 -SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDGAVFDTSTVASRAVVQ 174
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----- 242
+++ E R +LK++GF + + + G
Sbjct: 175 VDVRVV----------EFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAGQAPSM 224
Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
F++ L LE R LAEPTL A+SGQSASF +GG+
Sbjct: 225 TGVTPISSAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLAGGEVPI 284
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSY 351
V + G TS+ YG+ L TPTVLSP RI L++ E S+ + ++ +P++
Sbjct: 285 P-VPQALGTTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAF 343
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R+ADTTVEL G + V+ GL+ + +PLL +P++G F+ + + E E+
Sbjct: 344 ITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQNEKELV 403
Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
I TP LV P+A + V + A+ +
Sbjct: 404 IIVTPHLVSPLAKGATLPST-----PGEQSEQRNGPVWRSLIGGVAARDSAPGFS 453
>gi|332284569|ref|YP_004416480.1| putative outer membrane protein [Pusillimonas sp. T7-7]
gi|330428522|gb|AEC19856.1| putative outer membrane protein [Pusillimonas sp. T7-7]
Length = 474
Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats.
Identities = 109/470 (23%), Positives = 189/470 (40%), Gaps = 45/470 (9%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L +A+ + A+ +++ + +V +L +P DV V V D
Sbjct: 6 ILLGCLLMMAQHSGAAPSQEAM-------------LNLQVGEVKVLGIP-DVARVAVGDG 51
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD- 133
+ V + + +F ++ G + + DG++ + + ++ LR +
Sbjct: 52 HIINAVATDEKEVIVFARHEGSTALQIWSADGQRWQYQIEVAPEGLRQIQQELRSVLERI 111
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
+ ++ V D +V+ G + D +R EL++ + + +
Sbjct: 112 PHAQLSAVGDKLVIEGDDLSDGDRERIAELAKHYPQLLDFTG-------------QVGWD 158
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-----------KFVSEG 242
V L V + EV R L+++G + + + G S A D G +
Sbjct: 159 RMVLLDVQVVEVPRIQLQELGLRWNT-ATDGGLSAGLAWDGGSKRLDDRPSESVMPIGFP 217
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ ++A+ + LA+P L A SG +A F +GG+ Y TV +
Sbjct: 218 ATMAAGYFGVNALLSARINAMAQKGTAVVLAQPQLLARSGSTAEFLAGGEVPYSTV-DAN 276
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
G T+ YGV L TP + G + RI+ EVS ++ + PS + R+A T +
Sbjct: 277 GNTNTAFKPYGVSLRITPQIERNGAVRSRIEVEVSSVDNALSVPNGPSLKTRRAATEFNV 336
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV--- 419
SG T+VLAG L + + +P L IPILG LF++SRF R ETE+ I TP LV
Sbjct: 337 RSGQTLVLAGFLSREATHNVDKVPGLGDIPILGELFKSSRFQRHETELAIFVTPVLVGAD 396
Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP-KEASEVEGQNYKGA 468
P R + +D + + P A +V ++G
Sbjct: 397 HPGLARRVQLGEDILKTAFPQAPIINASLAPLPKPLVAADQVSWDPWQGP 446
>gi|152989020|ref|YP_001350207.1| putative type II secretion system protein [Pseudomonas aeruginosa
PA7]
gi|150964178|gb|ABR86203.1| probable type II secretion system protein [Pseudomonas aeruginosa
PA7]
Length = 408
Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats.
Identities = 92/434 (21%), Positives = 170/434 (39%), Gaps = 71/434 (16%)
Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
+ +A+ + + ++S+ + L++ V ++ + + DP ADV + ++ +
Sbjct: 15 QPASALPQGCLELLAQAPQVSVAQGQQNDLRLAVPIKRLAIGDPQIADVQLLDRSSLLVT 74
Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
GK G ++++ + L + +E G
Sbjct: 75 GKEQGSTSLLIWTACSAEPLRSQVAVEG-----------------------------RGS 105
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
V T ++ +QV + EV R L
Sbjct: 106 VDTAAAPALGAGGADEL-------------------------PNQVQTDIRFVEVSRSKL 140
Query: 211 KQIGFQHSITGSSSGPSKSFAA---------DFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
KQ G + + + G G + + + ++
Sbjct: 141 KQASTSFVRRGGNLWVLGAPGSLGDIKVNADGSGLGGTFGAGASGFNLIFGGGKWLSFMN 200
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
ALE + TLA P+L A+SGQSASF +GG+ + + ++ ++G+ L TPT
Sbjct: 201 ALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPT 260
Query: 322 VLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
V++ RI L++ EVSE I +P+ RVR+ DT+V L G + V++GL +
Sbjct: 261 VMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSN 320
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS 435
+ P L IPILGA FR+++ ++++ E+ + TP LV+P+A P +
Sbjct: 321 SVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPGLPGEGLR 380
Query: 436 --VEDDAKAFFFNR 447
++ +F R
Sbjct: 381 HYDPGFSRLYFLER 394
>gi|149173675|ref|ZP_01852304.1| probable type II secretion system protein [Planctomyces maris DSM
8797]
gi|148847205|gb|EDL61539.1| probable type II secretion system protein [Planctomyces maris DSM
8797]
Length = 744
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 105/477 (22%), Positives = 195/477 (40%), Gaps = 52/477 (10%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
+ G ++ I + + ++ ++ ++DP+ + V +SP + + G +
Sbjct: 134 PLPTQIRSTPGIFDEMEIIIRRSQLIITNSRIRRYAIADPSIIEFVTYSPTEISIVGLEL 193
Query: 95 GQANVILIGHDGKQMLNLDILIERDIA----------HLEMTLRRFIADSNIRVEMVSDT 144
G + L + + +D + LE + +S + + +S
Sbjct: 194 GTTTLTLWFEGDDTPITYLVHTIQDPSLEGQRRIDYGKLERKIAVLFPNSKVYLIPLSRK 253
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS------------------------- 179
+++ G ++ + + + N
Sbjct: 254 IIVKGEASDATEAANILSVIRGEVINYEGNLGGPQPYGAGGAYGGGYGAAGGVLDGIGNN 313
Query: 180 --SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
+S ++N+L I GE QV + VTIA++ R +++Q+G S+ G + + GG
Sbjct: 314 GYASSFIVNMLEIPGEFQVMIHVTIAQMNRTMMRQLGVDLSVLFD--GGRQFLGSSMGGV 371
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LY 295
+ + G+ + +++AL + + +A PTLT +SG SASF +GG+
Sbjct: 372 PST------LTGIFEAGEVNVLINALAQNGTTKIMARPTLTVLSGHSASFLAGGEFAVPT 425
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
TS T +G + TP V+ I +RI E S+ G + +P R+
Sbjct: 426 IVGVGGAQGTSTTFRGFGTSIVVTPIVIDKDLIRMRIVPEYSQINDGNSVQGIPGLNSRR 485
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAA 414
A TTVEL G TIVLAGL D IP L +IP++G LF + + ++ E+E+ I
Sbjct: 486 AQTTVELREGQTIVLAGLFGHDSSTGVTRIPWLGEIPLVGSYLFSSKQSSQGESELLITV 545
Query: 415 TPFLVKPVAMRDL-SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
TP LV+P+ ++ P +V D + + + G + + + Q Y G
Sbjct: 546 TPQLVRPMEEDEVPPYPGFEVTVPQDKELY---KYAMTEGAPDTAVYQLQPYGRGAG 599
>gi|293606490|ref|ZP_06688848.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553]
gi|292815113|gb|EFF74236.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553]
Length = 458
Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats.
Identities = 107/479 (22%), Positives = 188/479 (39%), Gaps = 41/479 (8%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
++R T M L ++ + + + A N + I++ + L +
Sbjct: 1 MKRYQRTTMICVLSAAVAMTYGVVSLAQTTAPGAN------AAARDIAVAVKGQQSLMLD 54
Query: 64 VDV-QDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
+ + DP ADV + ++ L+GK G + + + ++ +
Sbjct: 55 GAAPSRIAIGDPEVADVKILPASGKRAGSLLLYGKKAGTTQLQIWTGNNPTPQIWNVRV- 113
Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
++ L V++ D VL G T A + + + +
Sbjct: 114 --AGSVQAALASRGIQGGPNVDIAGDKAVLSGNAETPLAQIAAAQAAAAAVGDKNVVDVS 171
Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
+ + V+ + E R ++KQ G + + + + A G
Sbjct: 172 TAGAGGVVQVEVKVVEV-----------SRSVMKQAGINFAASNGPWAGTSATAPSGLGA 220
Query: 238 FVSEGGDFSVKGVL----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
+ + D +F L L+ R LAEPTL A++GQSASF +GG+
Sbjct: 221 PLGFTPGGIIASGFSLFYDSNNFSARLRLLQSNGMARVLAEPTLVALTGQSASFLAGGEL 280
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVN 344
G T+VT +G+ L TPTVLS RI L++ E SE
Sbjct: 281 PIPEA-GGLGTTTVTFKPFGIGLTVTPTVLSRDRISLKVAPEASELDYSNGIAINTSADT 339
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+ +P+ R R+ADTTVEL G + V++GL+ + + +P+L +PI+GA FR+ ++
Sbjct: 340 STIIPALRTRRADTTVELGDGESFVISGLVSRQTKAMVNKVPMLGDLPIIGAFFRSVDYS 399
Query: 405 REETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
+E+TE+ I TP LV+P+A L P D + + G ++
Sbjct: 400 QEDTELVIVVTPRLVRPIARGVTLPLPGGRQEAADSTFNAWGYYLMGPVGGQQMPGFSR 458
>gi|167911136|ref|ZP_02498227.1| type II/III secretion system protein [Burkholderia pseudomallei
112]
Length = 432
Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats.
Identities = 109/449 (24%), Positives = 174/449 (38%), Gaps = 40/449 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
V+ + I + + V VQ V ++DP ADV+V + L K
Sbjct: 5 VLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKA 64
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G ++++ + + + A R + + V+ + T V+ G T
Sbjct: 65 AGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVAGSAAT 118
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ RA+ + + + G ++ K + +++ E R +LKQ
Sbjct: 119 LDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVV----------EFSRSVLKQA 168
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261
G + A SV + L
Sbjct: 169 GLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 228
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT
Sbjct: 229 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 287
Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ +
Sbjct: 288 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRE 347
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +P L +PI+G F++ + + + E+ I TP LV P+A S P +
Sbjct: 348 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 402
Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+ V + Y S G +
Sbjct: 403 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 431
>gi|78486068|ref|YP_391993.1| type II and III secretion system protein [Thiomicrospira crunogena
XCL-2]
gi|78364354|gb|ABB42319.1| Flp (type IV) pilus assembly protein CpaC homolog [Thiomicrospira
crunogena XCL-2]
Length = 520
Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats.
Identities = 98/475 (20%), Positives = 200/475 (42%), Gaps = 69/475 (14%)
Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD--GKQMLNLD 113
+ I++ ++ LV++P A++ V + + + + GK G+ +I+ + ++
Sbjct: 37 ESQIVKFDYPIKRALVANPDLANLKVLNSKELLVSGKQAGKTELIIWYKKAPNQVGRHIV 96
Query: 114 ILIERDIA-------HLEMTLRRFIADSNI-----------------RVEMVSDTVVLHG 149
+ + D + + +R+ D + ++ V + +
Sbjct: 97 LKVAPDASRREEIEQTVSTLIRQLDPDKKVKFVLKNIWIESNSSVRRELDNVGNQIDNDS 156
Query: 150 MVRTIQDSQR-------------AVELSETFLSQSGRNQYANSSSKK-----------VM 185
+++ + + ++ ++ + K+ V+
Sbjct: 157 TIKSKGNKNQDILQETQKAGSLNIKPVAGNYMVLLTGEVPNKARKKRIQSVISALGLSVV 216
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGF-------QHSITGSSSGPSKSFAADFGGKF 238
N++++ G+ Q+ L V +AEV + + G + I + +++ +
Sbjct: 217 NMIDVTGKSQIKLSVRVAEVVKGNPFKSGVAIRDKKDRFGIFPPGNLGTQALFSLNNSPG 276
Query: 239 VSEGGDFS------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ G F + + S VL LE R LA+P L SG++A+F GG+
Sbjct: 277 DTAGISFPHPDAFQIGFNPENGSIFGVLSLLEGHNLARVLAKPELIVQSGETATFLVGGE 336
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----M 348
++ T V+ +YGV L F+P V G I + ++ EVS+ +
Sbjct: 337 VAIPVAQNADTIT-VSYKEYGVRLRFSPIVTESGDIQMTVEPEVSDIDAANGTQTNNIII 395
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
PS+R RK TT+ L G + ++ GLL+D+I+ +P+L IPILGALFR++ + +++
Sbjct: 396 PSFRSRKTSTTITLAPGQSFIIGGLLQDNIRSQVSKVPVLGDIPILGALFRSNSYVHDKS 455
Query: 409 EIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
E+ I TP V PV + +S P ++ + AFF +V ++ E++ E
Sbjct: 456 ELAIMVTPTFVAPVDAGKKVSLPGENLKRPSNMDAFFLGKVAEVLPEGESALPES 510
>gi|53719509|ref|YP_108495.1| putative exported fimbriae assembly protein [Burkholderia
pseudomallei K96243]
gi|76808601|ref|YP_333341.1| type II/III secretion system protein [Burkholderia pseudomallei
1710b]
gi|121598954|ref|YP_993098.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
gi|124383520|ref|YP_001026125.1| type II/III secretion system protein [Burkholderia mallei NCTC
10229]
gi|126440403|ref|YP_001058807.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
gi|134282202|ref|ZP_01768907.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
gi|167002482|ref|ZP_02268272.1| type II/III secretion system protein [Burkholderia mallei PRL-20]
gi|167719788|ref|ZP_02403024.1| type II/III secretion system protein [Burkholderia pseudomallei
DM98]
gi|167738786|ref|ZP_02411560.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
gi|167816009|ref|ZP_02447689.1| type II/III secretion system protein [Burkholderia pseudomallei 91]
gi|167845916|ref|ZP_02471424.1| type II/III secretion system protein [Burkholderia pseudomallei
B7210]
gi|167894492|ref|ZP_02481894.1| type II/III secretion system protein [Burkholderia pseudomallei
7894]
gi|167902899|ref|ZP_02490104.1| type II/III secretion system protein [Burkholderia pseudomallei
NCTC 13177]
gi|237812067|ref|YP_002896518.1| bacterial type II/III secretion system protein [Burkholderia
pseudomallei MSHR346]
gi|238562618|ref|ZP_00440075.2| bacterial type II/III secretion system protein [Burkholderia mallei
GB8 horse 4]
gi|242315526|ref|ZP_04814542.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
gi|254177827|ref|ZP_04884482.1| type II/III secretion system protein [Burkholderia mallei ATCC
10399]
gi|254179957|ref|ZP_04886556.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
gi|254188633|ref|ZP_04895144.1| type II/III secretion system protein [Burkholderia pseudomallei
Pasteur 52237]
gi|254198005|ref|ZP_04904427.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
gi|254260610|ref|ZP_04951664.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
gi|254358355|ref|ZP_04974628.1| type II/III secretion system protein [Burkholderia mallei
2002721280]
gi|52209923|emb|CAH35895.1| putative exported fimbriae assembly protein [Burkholderia
pseudomallei K96243]
gi|76578054|gb|ABA47529.1| type II/III secretion system protein [Burkholderia pseudomallei
1710b]
gi|121227764|gb|ABM50282.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
gi|124291540|gb|ABN00809.1| type II/III secretion system protein [Burkholderia mallei NCTC
10229]
gi|126219896|gb|ABN83402.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
gi|134246240|gb|EBA46329.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
gi|148027482|gb|EDK85503.1| type II/III secretion system protein [Burkholderia mallei
2002721280]
gi|157936312|gb|EDO91982.1| type II/III secretion system protein [Burkholderia pseudomallei
Pasteur 52237]
gi|160698866|gb|EDP88836.1| type II/III secretion system protein [Burkholderia mallei ATCC
10399]
gi|169654746|gb|EDS87439.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
gi|184210497|gb|EDU07540.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
gi|237503987|gb|ACQ96305.1| bacterial type II/III secretion system protein [Burkholderia
pseudomallei MSHR346]
gi|238522203|gb|EEP85649.1| bacterial type II/III secretion system protein [Burkholderia mallei
GB8 horse 4]
gi|242138765|gb|EES25167.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
gi|243061822|gb|EES44008.1| type II/III secretion system protein [Burkholderia mallei PRL-20]
gi|254219299|gb|EET08683.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
Length = 441
Score = 233 bits (593), Expect = 7e-59, Method: Composition-based stats.
Identities = 108/449 (24%), Positives = 173/449 (38%), Gaps = 40/449 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
V+ + I + + V VQ V ++DP ADV+V + L K
Sbjct: 14 VLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKA 73
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G ++++ + + + A R + + V+ + T V+ G T
Sbjct: 74 AGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVAGSAAT 127
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ RA+ + + + G ++ K + +++ E R +LKQ
Sbjct: 128 LDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVV----------EFSRSVLKQA 177
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261
G + A SV + L
Sbjct: 178 GLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 237
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT
Sbjct: 238 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 296
Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + + GL+ +
Sbjct: 297 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRE 356
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +P L +PI+G F++ + + + E+ I TP LV P+A S P +
Sbjct: 357 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 411
Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+ V + Y S G +
Sbjct: 412 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 440
>gi|307726635|ref|YP_003909848.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
gi|307587160|gb|ADN60557.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
Length = 642
Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats.
Identities = 93/467 (19%), Positives = 182/467 (38%), Gaps = 28/467 (5%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
+R +R +++ L P+ A + +D + + + +V IL
Sbjct: 8 VRLRRRVLPSVLVGVLLCEA------APLTLAQSIYSPAADDASAASRVLEMFRGEVRIL 61
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
VP ++ + + + V + L G+ G ++++ G + + + ++
Sbjct: 62 HVPGTIKRIAIGNGKLITANVVDGN-LMLLGEQDGMTSLVVWNEKGIALQTTVRIAKSEV 120
Query: 121 AHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
LR + S +R++ + +VL G++ + V + ++ +
Sbjct: 121 NASLQQLRAVLKSVSGLRIDAIGSNIVLSGVI-----HRDMVAVVKSATQDMKNVVDTTT 175
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ A V KV I EV R+ + +G + + G
Sbjct: 176 VDEG------EALRKTVHFKVQIMEVTRNAQRNLGIAWDSAFRGPQIGGAASVATGAAKA 229
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
G + + + ++ LA P L SG +ASF +GGQ
Sbjct: 230 VTAGTSYFLAGIAS-NISSQINFAVNNGDAFILAAPELNTRSGGTASFLAGGQVPIPQS- 287
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ G T+V DYGV L P V + G I + TE+S+ V+ G +P + R +
Sbjct: 288 GALGTTNVMYKDYGVKLSINPVVDANGIISAHLTTEISQIDPTVSYGGLPGFLTRSTSSD 347
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ + +G T+ ++GL+ D +G+P L +IP++G LFR+ F +++++ I TP +
Sbjct: 348 ISMRTGETLAISGLISADAVNDSDGMPFLGQIPVIGQLFRSDSFRAKKSDLVIFVTPLIS 407
Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
P +L+ D + D + VNK P+ E +
Sbjct: 408 DP----ELAPNTDLLARADRIDS---GYVNKFGNPEPLVADEEKAAH 447
>gi|94312586|ref|YP_585795.1| pilus assembly protein [Cupriavidus metallidurans CH34]
gi|93356438|gb|ABF10526.1| pilus assembly protein [Cupriavidus metallidurans CH34]
Length = 473
Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats.
Identities = 84/407 (20%), Positives = 166/407 (40%), Gaps = 37/407 (9%)
Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH----SPRTMYLFGK 92
+ + + + ++ ++ V V +P AD ++ P T+ + +
Sbjct: 44 PPTGSFDTAGSRTLRLLAGAQQEIRPGQALERVAVGNPEVADALLLKHRGGPSTVLVVAR 103
Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
G ++ + D + + +R +++ + ++ G
Sbjct: 104 KPGVTDLKIWSRDVAPVSYTVRV---------DAVRPDPGGASVDLSSAGASI--SGESP 152
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+ R + + +S + + V++ + V + V + E+ + +LK+
Sbjct: 153 DAPAAARTLMAARAAVSSADGKRAGV-----VVDRSTVPVSGTVQVDVKVVEISKTVLKE 207
Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVL 260
IG + + G F++ L
Sbjct: 208 IGLNFYRDNGGFAFGTFSPSSLTKATFTPGVGTVVDSVSPISSAFNLIAGSVSKGIFANL 267
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+E +R LAEP+L A+SGQSASF +GG+ V + G T++ +G+ L +P
Sbjct: 268 SLMEANGLVRVLAEPSLVALSGQSASFLAGGEIPIP-VPQALGTTTIQYKPFGIGLTVSP 326
Query: 321 TVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
TV+S RI L++ E S+ +N +P+ R+ADTT+EL G + V+ GL+
Sbjct: 327 TVMSRERIALKVAPEASDLDPSRGIVLNGATVPAIVTRRADTTIELGDGESFVIGGLVSR 386
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
+ +P L +P++G+ F+N F++E+ E+ I TP L+KP+A
Sbjct: 387 NTVSNVSKVPFLGDLPVIGSFFKNLNFHQEDRELMIVVTPHLIKPLA 433
>gi|53723520|ref|YP_102954.1| type II/III secretion system protein [Burkholderia mallei ATCC
23344]
gi|126448299|ref|YP_001080603.1| type II/III secretion system protein [Burkholderia mallei NCTC
10247]
gi|126452556|ref|YP_001066058.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|167824385|ref|ZP_02455856.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
gi|217423417|ref|ZP_03454918.1| type II/III secretion system protein [Burkholderia pseudomallei
576]
gi|226199666|ref|ZP_03795219.1| type II/III secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|254199896|ref|ZP_04906262.1| type II/III secretion system protein [Burkholderia mallei FMH]
gi|254206228|ref|ZP_04912580.1| type II/III secretion system protein [Burkholderia mallei JHU]
gi|254297793|ref|ZP_04965246.1| type II/III secretion system protein [Burkholderia pseudomallei
406e]
gi|52426943|gb|AAU47536.1| type II/III secretion system protein [Burkholderia mallei ATCC
23344]
gi|126226198|gb|ABN89738.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|126241169|gb|ABO04262.1| type II/III secretion system protein [Burkholderia mallei NCTC
10247]
gi|147749492|gb|EDK56566.1| type II/III secretion system protein [Burkholderia mallei FMH]
gi|147753671|gb|EDK60736.1| type II/III secretion system protein [Burkholderia mallei JHU]
gi|157807445|gb|EDO84615.1| type II/III secretion system protein [Burkholderia pseudomallei
406e]
gi|217393275|gb|EEC33296.1| type II/III secretion system protein [Burkholderia pseudomallei
576]
gi|225928252|gb|EEH24286.1| type II/III secretion system protein [Burkholderia pseudomallei
Pakistan 9]
Length = 432
Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 108/449 (24%), Positives = 173/449 (38%), Gaps = 40/449 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
V+ + I + + V VQ V ++DP ADV+V + L K
Sbjct: 5 VLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKA 64
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G ++++ + + + A R + + V+ + T V+ G T
Sbjct: 65 AGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVAGSAAT 118
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ RA+ + + + G ++ K + +++ E R +LKQ
Sbjct: 119 LDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVV----------EFSRSVLKQA 168
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261
G + A SV + L
Sbjct: 169 GLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 228
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT
Sbjct: 229 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 287
Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + + GL+ +
Sbjct: 288 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRE 347
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +P L +PI+G F++ + + + E+ I TP LV P+A S P +
Sbjct: 348 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 402
Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+ V + Y S G +
Sbjct: 403 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 431
>gi|167919159|ref|ZP_02506250.1| type II/III secretion system protein [Burkholderia pseudomallei
BCC215]
Length = 432
Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats.
Identities = 108/449 (24%), Positives = 173/449 (38%), Gaps = 40/449 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
V+ + I + + V VQ V ++DP ADV+V + L K
Sbjct: 5 VLLSFAARAAETGAIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKA 64
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G ++++ + + + A R + + V+ + T V+ G T
Sbjct: 65 AGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVAGSAAT 118
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ RA+ + + + G ++ K + +++ E R +LKQ
Sbjct: 119 LDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVV----------EFSRSVLKQA 168
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261
G + A SV + L
Sbjct: 169 GLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 228
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT
Sbjct: 229 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 287
Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + + GL+ +
Sbjct: 288 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRE 347
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +P L +PI+G F++ + + + E+ I TP LV P+A S P +
Sbjct: 348 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 402
Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+ V + Y S G +
Sbjct: 403 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 431
>gi|304311185|ref|YP_003810783.1| Probable outer membrane channel protein [gamma proteobacterium
HdN1]
gi|301796918|emb|CBL45131.1| Probable outer membrane channel protein [gamma proteobacterium
HdN1]
Length = 470
Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 92/401 (22%), Positives = 157/401 (39%), Gaps = 19/401 (4%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
V G ISI + +L P +V V + + A+ + L G G ++
Sbjct: 55 PVPPGYDDVISIVQGQTTLLPFP-NVVRVSIGEENLANAQPAGANEILLTGLKAGVTDLR 113
Query: 101 LIGHDGKQ-MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
+ GK L I+ LE++ + + V++ G + QD+
Sbjct: 114 IWPEHGKAKRYLLKIIDNTWTRVLELSNTVLADIEGVSAREDNGIVLIEGRLLREQDAAV 173
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+L + + + + L N+ V L V + EVR+ LK++G Q
Sbjct: 174 IADLKAKLKKEVKEGKVVFN-----VVLPNVKLAAMVMLDVHVVEVRKQDLKKLGVQWDS 228
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-----------RFSFETVLHALERATA 268
+ G F + F + S + L+ L+
Sbjct: 229 ATAGPAYGVLGQFRGAGNFEKDTSVFGFLMTENRSPIKVGNGYIGTSIGSKLNFLQSNGV 288
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
LA+P L SG ASF +GG+ TV+ ++ GV+L +P G I
Sbjct: 289 AHVLAQPKLVTRSGSEASFLAGGEIPIPTVTKDNQINTI-FKQVGVILKISPKADPDGFI 347
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
I EVS+ V +P + RK + + SG T+ ++G+L ++ + + +P L
Sbjct: 348 ETAINVEVSQVDASVQVLGIPGFITRKTKMEMNVQSGQTMAISGMLSEESSKAIDKMPGL 407
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
IPILG LF++ F + TE+ I TP+LV P + ++
Sbjct: 408 GSIPILGELFKSRDFRQNTTELMIFVTPYLVDPDSEQNKEL 448
>gi|323529159|ref|YP_004231311.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
gi|323386161|gb|ADX58251.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
Length = 597
Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats.
Identities = 88/439 (20%), Positives = 172/439 (39%), Gaps = 23/439 (5%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
R +R +++ L P+ A A + +D + + +V IL+
Sbjct: 9 RLRRRVLPSVLIGVLLCEA------APLALAQGASASATDDASATTHVLEMFRGEVRILR 62
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
+P ++ + + + V + L G+ G ++++ G + + + ++
Sbjct: 63 LPGTIKRIAIGNGKLITANVVDGN-LMLLGEQDGMTSLVVWNEKGIALQTTVRIAKAEVN 121
Query: 122 HLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
LR + S ++++ + +VL G+V + V + ++ +
Sbjct: 122 ASLQQLRAVLKSVSGLQIDAIGSNIVLSGVV-----HRDMVAVIKSATQDMKNVIDTTTV 176
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
+ A V KV I EV R+ +++G + + G
Sbjct: 177 DEG------EALRKTVHFKVQIMEVTRNTQRKLGIAWDSAFRGPQIGGAASVASGAAKAV 230
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G + + + ++ LA P L SG +ASF +GGQ
Sbjct: 231 TAGTSYFLAGIAS-NISSQINFAVNNGDAFILAAPELNTKSGGTASFLAGGQVPIPQS-G 288
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ G T+V DYGV L P V + G I + TE+S+ V+ G +P + R + +
Sbjct: 289 ALGTTNVMYKDYGVKLSINPVVDANGIISAHLTTEISQIDPTVSYGGLPGFLTRSTSSDI 348
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ +G T+ ++GL+ D +G+P L +IP++G LFR+ F +++++ I TP +
Sbjct: 349 SMRTGETLAISGLISADSVNDSDGMPFLGQIPVIGQLFRSDSFRAKKSDLVIFVTPLISD 408
Query: 421 P--VAMRDLSRPDDHYSVE 437
P DL D
Sbjct: 409 PELAPNADLLTRADGIDRA 427
>gi|319943382|ref|ZP_08017664.1| type II and III secretion system protein [Lautropia mirabilis ATCC
51599]
gi|319743197|gb|EFV95602.1| type II and III secretion system protein [Lautropia mirabilis ATCC
51599]
Length = 434
Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats.
Identities = 95/412 (23%), Positives = 170/412 (41%), Gaps = 37/412 (8%)
Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
A+ + + + I++ L + +++V V + + R +
Sbjct: 8 VGAAASVLRPSSTMTSTDAIETITLSLGQGHLMEVGQ-VLRIALGSGRVLQANWLDDRQL 66
Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVV 146
L + G+ + L G ++ E + L + + +S +R + D ++
Sbjct: 67 LLIPEAPGETTLHLWLKGGGIRKYQILVTESNSVRLAQDMNLLLGENSGVRARALGDRIL 126
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEV 205
L G T + + RA EL + + +V++L++ G +Q + L+V + E+
Sbjct: 127 LEGQNPTEEGAWRAAELVKRY--------------PQVISLVSRRGYEQMINLEVKMIEI 172
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET------- 258
R+ LKQ+G + G+ + G F G G F
Sbjct: 173 GRNALKQLGVRWQGGGAGDWAVSGPSFGVIGDFKRSGAFLPEGGAAATRGFAVAPRIHPF 232
Query: 259 ------------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
++ + + LAEP L+ SG A F +GG+ V S+ GA +
Sbjct: 233 ATSASMVSSLSSMIDLMVQNGDAAVLAEPRLSTRSGGKARFVAGGELPIP-VLSANGAAN 291
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V +YGV P V + G I + TEVS V +P R + ++T V L G
Sbjct: 292 VDFKEYGVRFEVEPVVNAQGVISASLHTEVSSIDDEVTVMGVPGLRKQSSNTDVNLRPGE 351
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
T+V+AG++++++ IP L +PILG LFR+ RF + E+E+ + TP L
Sbjct: 352 TLVIAGMVRNEMSGAITKIPGLGDLPILGHLFRSKRFRQRESEMVVLITPRL 403
>gi|17549308|ref|NP_522648.1| outer membrane channel signal peptide protein [Ralstonia
solanacearum GMI1000]
gi|17431560|emb|CAD18238.1| probable pilus assembly, secretin cpac signal peptide protein
[Ralstonia solanacearum GMI1000]
Length = 454
Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats.
Identities = 91/414 (21%), Positives = 165/414 (39%), Gaps = 40/414 (9%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMYLFGKNVGQA 97
+ + + + +++ ++ + + +P AD ++ ++ + K G A
Sbjct: 28 QGMPADQALHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLIIAKKPGAA 87
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
N+++ G + + + + + T VL G V+
Sbjct: 88 NIMVWTQGGTALTYNVQVDAEPRGA-----------GSPDLAVQGSTAVLTGQVKD---- 132
Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
L+ S + V++ +A V + V + E + +LK+ GF
Sbjct: 133 --VYSLARARKSAAAAGGAEPPKGGSVIDNTTMAVPGTVQVDVRVVEFSKTVLKEAGFIF 190
Query: 218 SITGSSSGPSKSFAADFGG-----------KFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ T + G F++ L +E
Sbjct: 191 TRTRGGFTFGSFSPSSLTQYTVTPSSLTTQSTTPIGTAFNLLISSFSKGIFADLSLIESN 250
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
R LAEP+L A+SGQSA+F +GG+ V + G T++ +G+ L +PT+LS
Sbjct: 251 GLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFGIGLTVSPTILSEN 309
Query: 327 RIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
RI L++ E S+ + +N +P+ R+ADTTVEL G + V+ GL+
Sbjct: 310 RIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADTTVELGDGESFVIGGLVSRTTLSNV 369
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
+ +P L +PI+G F+ +N+EE E+ I TP LV+P+A P D
Sbjct: 370 DKVPFLGDVPIIGTFFKRLNYNQEERELVIIVTPRLVRPMARNA---PIDKMLP 420
>gi|283779187|ref|YP_003369942.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
gi|283437640|gb|ADB16082.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
Length = 940
Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats.
Identities = 118/539 (21%), Positives = 209/539 (38%), Gaps = 77/539 (14%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIG------- 53
+R Q ++ + S P +++ + + E ++ +
Sbjct: 406 LRARQAAEARTLTPYSQSIAPVISRPGYAQPGQTRPAALVQPEPIGPARVDMIPEGSPFE 465
Query: 54 -LNKVIILQ----------VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
+++ +L VD+ V D + DVV +PR + + GK+ G +V
Sbjct: 466 VIDESGVLTVRVRRSRLLRTKVDIYRTAVVDESICDVVQFTPREVSIIGKSQGATHVTFW 525
Query: 103 -GHDGKQMLNLDILIERDIAH----------LEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
Q L + +E D L+ + DS I + +V+ +++ G
Sbjct: 526 FDDPNSQPLTWLVKVEPDAEEVKKEEQTYKLLQDVINEMFPDSKIELVVVASKLIVRGQA 585
Query: 152 RTIQDSQRAVEL-----------------------SETFLSQSGRNQYANSSSKKVMNLL 188
+ +++ + + + + + ++ S +V+N+L
Sbjct: 586 KDSEEAAQIISIIRAQTGGQGQNGLGGGQNGLGEGAAADVLSDSATGNSSRSRLQVINML 645
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SV 247
+ G QV LKV IAE+ R + G S S K + GG ++
Sbjct: 646 RVPGVHQVALKVKIAELNRTAARGFGVDLKTDISFSESEKGSSLLLESILNMAGGQAPAL 705
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
+D + + L++ ++ LAEPTL +SG+ A+F +GG+ TV S G +V
Sbjct: 706 LTQIDGDEIQIGIRYLQQHGVVKLLAEPTLVTLSGRPATFIAGGEFAVPTVVGSAGLNAV 765
Query: 308 T--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
T +G ++ F PTV+ RI L + E S+ +N G P RVR A TTVE+ G
Sbjct: 766 TTDFRAFGAIISFMPTVVDKDRIRLEVAPEFSQINQDLNVGGTPGLRVRAATTTVEMREG 825
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
T+ +AGLL+D++ + +P L +F R ETE+ I +P LV P+
Sbjct: 826 QTLAIAGLLEDNMNGTT-----IGDLPFLAKIFGRRGMQRNETELLILVSPELVHPMEPE 880
Query: 426 DL-SRPDDHYSVEDDAKAFFFN----------------RVNKIYGPKEASEVEGQNYKG 467
++ P + + + F R+ K YG S G G
Sbjct: 881 EVPPLPGFDVTEPTNGQFFLHGDLEGNPTQDYRSTVWPRLRKRYGSGGPSMTSGPFGHG 939
>gi|160897515|ref|YP_001563097.1| type II and III secretion system protein [Delftia acidovorans
SPH-1]
gi|160363099|gb|ABX34712.1| type II and III secretion system protein [Delftia acidovorans
SPH-1]
Length = 492
Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats.
Identities = 91/473 (19%), Positives = 164/473 (34%), Gaps = 85/473 (17%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
LQR +T+ + P P + ++ G + + + ++ +
Sbjct: 14 LQRAVWTLCGSMALLALPPAVSAPADTAGVQGMHAPGAGDMPSGDSLQLVAGRQHLMPLA 73
Query: 64 VDVQDVLVSDPTKADVVVHSPR----------TMYLFGKNVGQANVILIGHDGKQMLNLD 113
+ V DP DV + + L K G +++ G
Sbjct: 74 STPGRIAVGDPNVLDVKLLRATPGSGAGAGGTELLLTPKAQGSTTLVVWPQKGGAPQRW- 132
Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
V++ ++L + ++ + +AV +
Sbjct: 133 -----------------------EVQVRGQHLLLEKRLTSVPEHAQAVAELRQYAPAQTL 169
Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
K + V + V + E ++ +K+IG G ++ +
Sbjct: 170 LVDNAQIDVK---------SNTVQVDVQVVEFKKSAMKRIGVNIYSGGRNNQGFSFGSFS 220
Query: 234 FG-------------------------------------GKFVSEGGDFSVKGVLDRFSF 256
G + +
Sbjct: 221 PGVVGSISTNTNGTGTGTGTGNTGTGGTGSGGVSNNTSSAIASAMSLVMTFGKAFSGAGI 280
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
T L LE R LA PTL A +GQ+ASF +GG+ V + G ++ ++G+ L
Sbjct: 281 VTQLSILEGNGMARVLARPTLLAQTGQNASFLAGGELPIP-VPARDGNIAIQYKEFGIKL 339
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
TPT+LS RI L++ E S+ + ++ +P+ R R+ADT+VEL G + V+ G
Sbjct: 340 QLTPTILSDDRIALKVSPEASDLDFNSGVTISGVTVPAIRTRRADTSVELADGESFVIGG 399
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
L+ +P+L +PILG F+N + +EE+E+ I TP LV P+
Sbjct: 400 LVSRATTSNVSKVPVLGDLPILGTFFKNLNYTQEESELVIIVTPRLVHPLPAS 452
>gi|116052338|ref|YP_792649.1| putative type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|115587559|gb|ABJ13574.1| putative type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 416
Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats.
Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 71/421 (16%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ + ++ + + L++ V ++ + + DP ADV + R + GK G ++++
Sbjct: 36 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ L + +E G V T
Sbjct: 96 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
G + +++++ N QV + EV R LKQ G +
Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274
+ + K ++G + + + ++ALE + TLA
Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++
Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281
Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
EVSE I +P+ RVR+ DT+V L G + V++GL + + P L
Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446
IPILGA FR+++ ++++ E+ + TP LV+P+A P + ++ +F
Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401
Query: 447 R 447
R
Sbjct: 402 R 402
>gi|215433395|gb|ACJ66663.1| outer bacterial membrane secretin family protein [Myxococcus fulvus
HW-1]
Length = 482
Score = 230 bits (586), Expect = 5e-58, Method: Composition-based stats.
Identities = 93/439 (21%), Positives = 175/439 (39%), Gaps = 63/439 (14%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
G +S+G+ ++ +P + V + DP+ ADV + + G+ G+ +++
Sbjct: 25 AQDGTNVSLGVGSQKVITIPG-LSRVALGDPSIADVKTLGSGQLLITGQAEGKTTLLVWK 83
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
G+++ L + ++D + ++R + + + V MV D + L G T QD+ R +
Sbjct: 84 SSGQRVSYLVAVRKQDPNEVITEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQ 143
Query: 163 LSETFLSQSGRNQYANSS------------------------------------------ 180
+ + + + A ++
Sbjct: 144 VVGLYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQ 203
Query: 181 ---------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+KV NLL + + + +V E+RR+ + G ++ + + S
Sbjct: 204 KAELITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYP---TDITGTASAI 260
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
A+ + V + + + R LA+P L SG+ A F +GG
Sbjct: 261 ANISQELFPGTFGSGVSTLALNANSDFSFGFQGNDGYGRLLAQPKLVCASGEKAEFLAGG 320
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAG 346
+ + + +V YGV+L+ PT G I I+ E SE V +
Sbjct: 321 EVPIPLI--TNNQFTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSS 378
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+P +R R+ T V + G TIVL+G+ D Q+ +P L IPI+G LF++ F+
Sbjct: 379 SIPGFRTRRVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIVGELFKSRGFDST 438
Query: 407 ETEIFIAATPFLVKPVAMR 425
+ E+ I TP +V P + +
Sbjct: 439 KRELVIFVTPRIVNPDSDK 457
>gi|207724789|ref|YP_002255186.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
gi|206590014|emb|CAQ36975.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
Length = 447
Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats.
Identities = 93/431 (21%), Positives = 172/431 (39%), Gaps = 48/431 (11%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMY 88
A + + G + + +++ ++ + + +P AD ++ R ++
Sbjct: 4 AALAPGVHAQNMPDGPVLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLL 63
Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
+ K G A++++ G + ++ ++ + + + + T VL
Sbjct: 64 IVAKKPGAASIMVWTQGGTAI-TYNVQVDAEARGA----------GSPDLAVQGGTAVLT 112
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G VR L+ + + +++ +A V + V + E +
Sbjct: 113 GQVRD------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVPGTVQVDVRVVEFSKT 166
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFV-------------------SEGGDFSVKG 249
+LK+ GF S T + F++
Sbjct: 167 VLKEAGFSFSRTRGGFTFGAYSPSSLSQATPSWLSSTASSSSGLTVQSTQPVSTAFNLLL 226
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
L +E R LAEP+L A+SGQSA+F +GG+ V + G T++
Sbjct: 227 SSVSKGLFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEY 285
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSG 365
+G+ L +PT+LS RI L++ E S+ I +N +P+ R+ADTTVEL G
Sbjct: 286 KPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDG 345
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+ V+ GL+ + +P L +PI+G+ F+ +N+EE E+ I TP LV+P+A
Sbjct: 346 ESFVIGGLVSRTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMARN 405
Query: 426 DLSRPDDHYSV 436
P D
Sbjct: 406 A---PIDKMLP 413
>gi|313106823|ref|ZP_07793035.1| RcpA [Pseudomonas aeruginosa 39016]
gi|310879537|gb|EFQ38131.1| RcpA [Pseudomonas aeruginosa 39016]
Length = 416
Score = 230 bits (585), Expect = 6e-58, Method: Composition-based stats.
Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 71/421 (16%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ + ++ + + L++ V ++ + + DP ADV + R + GK G ++++
Sbjct: 36 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ L + +E G V T
Sbjct: 96 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
G + +++++ N QV + EV R LKQ G +
Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274
+ + K ++G + + + ++ALE + TLA
Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++
Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281
Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
EVSE I +P+ RVR+ DT+V L G + V++GL + + P L
Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446
IPILGA FR+++ ++++ E+ + TP LV+P+A P + ++ +F
Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401
Query: 447 R 447
R
Sbjct: 402 R 402
>gi|283781350|ref|YP_003372105.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
gi|283439803|gb|ADB18245.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
Length = 940
Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats.
Identities = 118/539 (21%), Positives = 209/539 (38%), Gaps = 77/539 (14%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIG------- 53
+R Q ++ + S P +++ + + E ++ +
Sbjct: 406 LRARQAAEARTLTPYSQSIAPVISRPGYAQPGQTRPAALVQPEPIGPARVDMIPEGSPFE 465
Query: 54 -LNKVIILQ----------VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
+++ +L VD+ V D + DVV +PR + + GK+ G +V
Sbjct: 466 VIDESGVLTVRVRRSRLLRTKVDIYRTAVVDESICDVVQFTPREVSIIGKSQGATHVTFW 525
Query: 103 -GHDGKQMLNLDILIERDIAH----------LEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
Q L + +E D L+ + DS I + +V+ +++ G
Sbjct: 526 FDDPNSQPLTWLVKVEPDAEEVKKEEQTYKLLQDVINEMFPDSKIELVVVASKLIVRGQA 585
Query: 152 RTIQDSQRAVEL-----------------------SETFLSQSGRNQYANSSSKKVMNLL 188
+ +++ + + + + + ++ S +V+N+L
Sbjct: 586 KDSEEAAQIISIIRAQTGGQGQNGLGGGQNGLGEGAAADVLSDSATGNSSRSRLQVINML 645
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SV 247
+ G QV LKV IAE+ R + G S S K + GG ++
Sbjct: 646 RVPGVHQVALKVKIAELNRTAARGFGVDLKTDISFSESEKGSSLLLESILNMAGGQAPAL 705
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
+D + + L++ ++ LAEPTL +SG+ A+F +GG+ TV S G +V
Sbjct: 706 LTQIDGDEIQIGIRYLQQHGVVKLLAEPTLVTLSGRPATFIAGGEFAVPTVVGSAGLNAV 765
Query: 308 T--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
T +G ++ F PTV+ RI L + E S+ +N G P RVR A TTVE+ G
Sbjct: 766 TTDFRAFGAIISFMPTVVDKDRIRLEVAPEFSQINQDLNVGGTPGLRVRAATTTVEMREG 825
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
T+ +AGLL+D++ + +P L +F R ETE+ I +P LV P+
Sbjct: 826 QTLAIAGLLEDNMNGTT-----IGDLPFLAKIFGRRGMQRNETELLILVSPELVHPMEPE 880
Query: 426 DL-SRPDDHYSVEDDAKAFFFN----------------RVNKIYGPKEASEVEGQNYKG 467
++ P + + + F R+ K YG S G G
Sbjct: 881 EVPPLPGFDVTEPTNGQFFLHGDLEGNPTQDYRSTVWPRLRKRYGSGGPSMTSGPFGHG 939
>gi|300697742|ref|YP_003748403.1| pilus assembly protein (cpaC) [Ralstonia solanacearum CFBP2957]
gi|299074466|emb|CBJ54016.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
CFBP2957]
Length = 462
Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats.
Identities = 91/419 (21%), Positives = 173/419 (41%), Gaps = 40/419 (9%)
Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMYLFGK 92
+ + +G + + +++ ++ + + +P AD ++ R ++ + K
Sbjct: 31 PGVHAQSMPEGPVVHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLLIVAK 90
Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
G A++++ G + ++ ++ + + + + T VL G VR
Sbjct: 91 KPGAASIMVWTQGGTAI-TYNVQVDAEARGA----------GSPDLAVQGGTAVLTGQVR 139
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
L+ + + +++ +A V + V + E + +LK+
Sbjct: 140 D------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVPGTVQVDVRVVEFSKTVLKE 193
Query: 213 IGFQHSITGSSSGPSKSFAADFGG-----------KFVSEGGDFSVKGVLDRFSFETVLH 261
GF + T + + F++ L
Sbjct: 194 AGFIFTRTRGGFTFGSFSPSSLTQYTVTPSSLSTQSTTAVSSAFNLLISSFSKGIFADLS 253
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
+E R LAEP+L A+SGQSA+F +GG+ V + G T++ +G+ L +PT
Sbjct: 254 LIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFGIGLTVSPT 312
Query: 322 VLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
+LS RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+
Sbjct: 313 ILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFVIGGLVSRT 372
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
+ +P L +PI+G+ F+ +N+EE E+ I TP LV+P+A P D
Sbjct: 373 TLSNVDKVPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMARNA---PIDKMLP 428
>gi|218893396|ref|YP_002442265.1| RcpA [Pseudomonas aeruginosa LESB58]
gi|254239026|ref|ZP_04932349.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
gi|296391003|ref|ZP_06880478.1| putative type II secretion system protein [Pseudomonas aeruginosa
PAb1]
gi|126170957|gb|EAZ56468.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
gi|218773624|emb|CAW29438.1| RcpA [Pseudomonas aeruginosa LESB58]
Length = 416
Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats.
Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 71/421 (16%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ + ++ + + L++ V ++ + + DP ADV + R + GK G ++++
Sbjct: 36 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ L + +E G V T
Sbjct: 96 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
G + +++++ N QV + EV R LKQ G +
Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274
+ + K ++G + + + ++ALE + TLA
Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++
Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281
Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
EVSE I +P+ RVR+ DT+V L G + V++GL + + P L
Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446
IPILGA FR+++ ++++ E+ + TP LV+P+A P + ++ +F
Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401
Query: 447 R 447
R
Sbjct: 402 R 402
>gi|319788661|ref|YP_004148136.1| type II and III secretion system protein [Pseudoxanthomonas
suwonensis 11-1]
gi|317467173|gb|ADV28905.1| type II and III secretion system protein [Pseudoxanthomonas
suwonensis 11-1]
Length = 502
Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats.
Identities = 89/406 (21%), Positives = 153/406 (37%), Gaps = 29/406 (7%)
Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
+ +++ + + +VP ++ V V D V + G G+ NV
Sbjct: 84 ASTAQPLADALTLHAGEAAVRRVPAALRRVAVGDGEILSVHTVGRNELVFIGTQPGETNV 143
Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQ 158
L +G Q + + T+R + + ++ V V VV+ G S
Sbjct: 144 HLWLGNGTQRTVAVNVTGSRSDGVAATVRELLGNHPDVAVRAVGSNVVISGGELDAATSA 203
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ L + + + V + VTI E +D ++ +G +
Sbjct: 204 KIAALQKLYPQVLNFAGSD-----------PVGMRPMVRMDVTIMEFNKDAVEDLGIRWD 252
Query: 219 ITGSSSGPSKSFAADFGGKF----------------VSEGGDFSVKGVLDRFSFETVLHA 262
T S F + + + ++
Sbjct: 253 STISGPIGGLIRDVTTNDYFRVLPEDNRTFDEIREQLPTRLPGPQGYFGIATTIGSQINL 312
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
L LAEP L+A SG +A+F GG+ + S G T + +YG+ L+ +P V
Sbjct: 313 LMSRGKAWVLAEPKLSARSGSNATFLVGGEVPIV-IPSVLGQTQIEYKEYGIRLNISPNV 371
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
S + I EVS V +P + R+A+T + + +G TIV++GLL + +
Sbjct: 372 NSAREVATSIMAEVSRIDPSVAVQGVPGFLTRRAETEINVLAGQTIVISGLLDREAAKSV 431
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
+ P+L IPILG LFR+ F TE+ I TP +V P + +L
Sbjct: 432 DKFPILGDIPILGRLFRSDGFRGNRTELVIFVTPHIVTPDSPENLE 477
>gi|300694111|ref|YP_003750084.1| pilus assembly protein (cpac) [Ralstonia solanacearum PSI07]
gi|299076148|emb|CBJ35461.2| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
PSI07]
Length = 462
Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats.
Identities = 93/446 (20%), Positives = 172/446 (38%), Gaps = 48/446 (10%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
++ A + + + + + +++ ++ + + +P A
Sbjct: 4 AAVVRGWMGALALGCAALAPGVHAQSMPADQALHLLSGSQREIRLGKPLERIAIGNPEVA 63
Query: 78 DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
D ++ ++ + K G AN+++ G + +
Sbjct: 64 DALLLKGHGAAGSLLIVAKKPGAANIMVWTQGGTAITYNVQVDAAPRGA----------- 112
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
+ + + T VL G V+ L+ + + S S +++ IA
Sbjct: 113 GSPDLAVQGATAVLTGQVKD------VYSLARARKAAAVAGGAEPSKSGSMVDNTTIAVP 166
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------- 240
V + V + E + +LK+ GF S T + +
Sbjct: 167 GTVQVDVRVVEFSKTVLKEAGFSFSRTRGGFTFGSYSPSSLSQATPAWLSSTASSSSGLT 226
Query: 241 ------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
F++ L +E R LAEP+L A+SGQSA+F +GG+
Sbjct: 227 VQSTQPVSTAFNLLLSSVSKGIFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIP 286
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPS 350
V + G T++ +G+ L +PT+LS RI L++ E S+ I +N +P+
Sbjct: 287 IP-VPQALGTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPA 345
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
R+ADTTVEL G + V+ GL+ + +P L +P++G+ F+ +N+EE E+
Sbjct: 346 IVTRRADTTVELGDGESFVIGGLVSRTTLSNVDKVPFLGDVPVIGSFFKRLDYNQEEREL 405
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSV 436
I TP LV+P+A P D
Sbjct: 406 VIIVTPHLVRPMARDA---PIDKMLP 428
>gi|167836794|ref|ZP_02463677.1| type II/III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 423
Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats.
Identities = 109/444 (24%), Positives = 170/444 (38%), Gaps = 40/444 (9%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKNVGQAN 98
+ + I + + V VQ V + DP ADV+V + L K G +
Sbjct: 1 AAQAAEMGAIELTTGAQRQIAVGRGVQRVAIGDPNVADVLVIKGGRGGVLLVAKAAGSTS 60
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
+++ + + + A R + V T V+ G T+
Sbjct: 61 LMVWERGRDEPAVYTVDVVSGAA------RALLDGGAPGVRAYDGTAVVSGSAATLDAHA 114
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
RA+ + + + G A++ K + +++ E R +LKQ G
Sbjct: 115 RALAVGKGMAGKGGGVVDASTVGGKNVVQVDVRVV----------EFSRSVLKQAGLNFF 164
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLHALERA 266
+ A SV + L LE
Sbjct: 165 KQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILEAN 224
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPTVLSP
Sbjct: 225 NLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPTVLSPR 283
Query: 327 RIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ +
Sbjct: 284 RIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRETTSNV 343
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
+ +P L +PI+G F++ + + + E+ I TP LV P+A S P + +
Sbjct: 344 DKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATPGELSE 398
Query: 443 FFFNRVNKIYGPKEASEVEGQNYK 466
V + Y S G +
Sbjct: 399 QRDGPVWRSYLGGALSPDAGPGFS 422
>gi|15599500|ref|NP_252994.1| RcpA [Pseudomonas aeruginosa PAO1]
gi|254244885|ref|ZP_04938207.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
gi|9950526|gb|AAG07692.1|AE004846_9 RcpA [Pseudomonas aeruginosa PAO1]
gi|126198263|gb|EAZ62326.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
Length = 416
Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 71/421 (16%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ + ++ + + L++ V ++ + + DP ADV + R + GK G ++++
Sbjct: 36 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ L + +E G V T
Sbjct: 96 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
G + +++++ N QV + EV R LKQ G +
Sbjct: 117 -------RGAPAFTVGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274
+ + K ++G + + + ++ALE + TLA
Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++
Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281
Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
EVSE I +P+ RVR+ DT+V L G + V++GL + + P L
Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446
IPILGA FR+++ ++++ E+ + TP LV+P+A P + ++ +F
Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401
Query: 447 R 447
R
Sbjct: 402 R 402
>gi|115379230|ref|ZP_01466346.1| type II and III secretion system protein [Stigmatella aurantiaca
DW4/3-1]
gi|310822227|ref|YP_003954585.1| type II and III secretion system [Stigmatella aurantiaca DW4/3-1]
gi|115363762|gb|EAU62881.1| type II and III secretion system protein [Stigmatella aurantiaca
DW4/3-1]
gi|309395299|gb|ADO72758.1| Type II and III secretion system [Stigmatella aurantiaca DW4/3-1]
Length = 485
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 103/476 (21%), Positives = 181/476 (38%), Gaps = 75/476 (15%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
T FT + L V + + G I++G+ ++ VP +
Sbjct: 3 TRFTHHAAVLGVLMALVLSGTALAQERD------------GSTIALGVGTQKVITVPG-I 49
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
+ + DP A+V + + G+ G+ +I+ G+++ L + +D +
Sbjct: 50 ARIALGDPNVAEVKNIGNNQVLIIGQTEGKTTLIIWKSSGQRVTFLIAVRRQDPNEIISE 109
Query: 127 LRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS----- 180
+++ + + + V MV D + L G T QD+ R ++ + + + A ++
Sbjct: 110 IKKLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVSLYPNVKSFVKIAPNAKKLVA 169
Query: 181 ----------------------------------------------SKKVMNLLNIAGED 194
+KV NLL + +
Sbjct: 170 QNLNAAYQKAGLRNVQANVVGSTIFLEGSVESQQDLQKAELITKAIGEKVENLLVVGIKR 229
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
+ +V E+RR+ + G ++ S S + + + + S L
Sbjct: 230 MILSEVQFVEIRRNSRDRYGIRYPTDISGSATASALISKELFPG-TFSSGVSSLQFLASA 288
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
F A R LA+P L SG+ A F +GGQ + + +V YGV
Sbjct: 289 DFAVGFQA--NDGYGRLLAQPKLVCASGEKAEFLAGGQVPIPLI--TNNQFTVEYKPYGV 344
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGTIV 369
+L+ PT G I I+ E SE V + +P +R RK T V + G TIV
Sbjct: 345 ILNLRPTADRSGNIQTEIEAEASEIDTSVAVSIGGSAAVPGFRTRKVKTNVTVRHGETIV 404
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
L+G+ D Q+ +P L IPI+G LF+N F+ + E+ I TP +V P + +
Sbjct: 405 LSGVFSHDEQKAVSKLPGLGHIPIIGELFKNRAFDSTKRELVIFVTPRIVNPDSDK 460
>gi|168703130|ref|ZP_02735407.1| putative outer membrane channel for pilus assembly CpaC [Gemmata
obscuriglobus UQM 2246]
Length = 577
Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats.
Identities = 109/488 (22%), Positives = 183/488 (37%), Gaps = 37/488 (7%)
Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
R +R + + L + + P AA ++ K + + L +
Sbjct: 5 RTSRRFLPWALVVTLGLAAVTTGAGQPPDPKGAAPA-----DLDKSGAVVVPLGGLRSFD 59
Query: 62 VP----VDVQDVLVSDPTKADVVV--HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
V D+L S + P + L GK G + + ++ D L D++
Sbjct: 60 PKLKGGVPPTDILNSREDVLGARPDPNDPTKLLLTGKTAGLSQLTIVQKD-APPLKFDVV 118
Query: 116 IERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
++ D+A L +R + +++ VE + + +VL G V + D+ L+ + + +
Sbjct: 119 VKPDLAQLRKLIRDTVPTASVTVEPGLGNVIVLSGYVTSPSDADIVQRLANSAVGGANA- 177
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
V+N + I G QV + V +A V R+ L+ GF ++ G S S +
Sbjct: 178 --------NVINAVQIGGVQQVQIDVVVASVDRNQLRSRGFDFALPGRGSFSFSSLVSGL 229
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETV-------LHALERATAIRTLAEPTLTAISGQSASF 287
G + G + F F V L AL + LAEP + +G+ A F
Sbjct: 230 LGVQSAGGVTTATFSPDSNFQFAVVPNRFFGALRALRTEGVAKFLAEPRVVTQTGRPAFF 289
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GV 343
+GGQ + SS VT +G L P V G I L I ++ V
Sbjct: 290 RAGGQQAIISGSSGITGPGVTLQPFGTELTVVPIVYGNGMIWLDINPRITAVSQGLGITV 349
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
P + + +TV L SG T + GL+++ + +P+L +P G F
Sbjct: 350 GGSSSPGFTEQSVQSTVLLESGQTFAIGGLIQNSVNASASKVPVLGDLPFAGTYFSRVEH 409
Query: 404 NREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
E+E+ I TP LV P+ P DD + F N + G +
Sbjct: 410 TVRESELVILVTPRLVHPMDQCQGPKRLPGQETRSPDDYELFLENVLEVPRG--QRKVWN 467
Query: 462 GQNYKGAI 469
G+ Y
Sbjct: 468 GKCYNAPY 475
>gi|33593509|ref|NP_881153.1| putative secretory apparatus [Bordetella pertussis Tohama I]
gi|33572865|emb|CAE42800.1| putative secretory apparatus [Bordetella pertussis Tohama I]
gi|332382917|gb|AEE67764.1| putative secretory apparatus [Bordetella pertussis CS]
Length = 470
Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats.
Identities = 94/427 (22%), Positives = 158/427 (37%), Gaps = 36/427 (8%)
Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
R + M++ L + + + + + +L
Sbjct: 12 RGWLPWMAVLLAGGTMLWTPGGRAAPPAQPAV------------LRMEVGETQVLAAAG- 58
Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
V V V + V + LF + G ++V + G + ++ L
Sbjct: 59 VTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLRE 118
Query: 126 TLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
+ +A R V +V+ G + D R L++ +
Sbjct: 119 EVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIAALAQRYPEVLDFTG--------- 169
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGK 237
+ + V L V + E+ R L+++G + G+ S + A G
Sbjct: 170 ----RVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAVGGVHAGAVWNGSSAALAPPPGP 225
Query: 238 FVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
G+L L AL + LA+P L A SG +ASF +GG+ Y+
Sbjct: 226 LAGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYR 285
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
T T++ YGV L TP + + G + RI+ E S + P+ R R+A
Sbjct: 286 TTDKEGNGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRA 344
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T + SG T+VL G L + ++G+P LS++P++GALF R ETE+ I TP
Sbjct: 345 VTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTP 404
Query: 417 FLVKPVA 423
+V P
Sbjct: 405 TIVSPSD 411
>gi|108762925|ref|YP_631309.1| outer membrane secretin family protein [Myxococcus xanthus DK 1622]
gi|108466805|gb|ABF91990.1| protein transporter, outer bacterial membrane secretin (secretin)
family [Myxococcus xanthus DK 1622]
Length = 482
Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats.
Identities = 92/439 (20%), Positives = 174/439 (39%), Gaps = 63/439 (14%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
G +S+G+ ++ +P + V + DP+ A+V + + G+ G+ +++
Sbjct: 25 AQDGTTVSLGVGSQKVITIPG-LSRVALGDPSVAEVKTLGSGQLLITGQAEGKTTLLVWK 83
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
G+++ L + ++D + ++R + + + V MV D + L G T QD+ R +
Sbjct: 84 SSGQRVSYLVAVRKQDPNEVISEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQ 143
Query: 163 LSETFLSQSGRNQYANSS------------------------------------------ 180
+ + + + A ++
Sbjct: 144 VVGLYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQ 203
Query: 181 ---------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+KV NLL + + + +V E+RR+ + G ++ + + +
Sbjct: 204 KAELITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYP---TDITGTATAI 260
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
A + V + + + R LA+P L SG+ A F +GG
Sbjct: 261 ASISQELFPGTFGSGVSTLTLNANADFSFGFQGNDGYGRLLAQPKLVCASGEKAEFLAGG 320
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAG 346
+ + + +V YGV+L+ PT G I I+ E SE V +
Sbjct: 321 EVPIPLI--TNNQFTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSA 378
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+P +R RK T V + G TIVL+G+ D Q+ +P L IPI+G LF++ F+
Sbjct: 379 SIPGFRTRKVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIIGELFKSRGFDST 438
Query: 407 ETEIFIAATPFLVKPVAMR 425
+ E+ I TP +V P + +
Sbjct: 439 KRELVIFVTPRIVNPDSDK 457
>gi|239817412|ref|YP_002946322.1| type II and III secretion system protein [Variovorax paradoxus
S110]
gi|239803989|gb|ACS21056.1| type II and III secretion system protein [Variovorax paradoxus
S110]
Length = 457
Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats.
Identities = 103/444 (23%), Positives = 170/444 (38%), Gaps = 64/444 (14%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
S+ A A+A + + + + L + ++ + +
Sbjct: 21 FSLIALCVLALGAWPIATNAADATPVR-----PQPQRPLILNAGTQQELLIEKGIERMAI 75
Query: 72 SDPTKADVVVHS------PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
+D A + V + + GK G+ +++ I + R
Sbjct: 76 ADEAVAAITVTRKGPNSPAARLIITGKAAGRTTLMIWEKGNSAATTYSIEVRRR------ 129
Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
+ L G + ++ Q+A E + G + A + V+
Sbjct: 130 ------------------SATLAGTMDSVAAHQQARETAMA-----GMPEKAELIDRSVV 166
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGD 244
N+ + V ++V + E R +LKQ G S +S+G S + +
Sbjct: 167 NV----RSNTVQVEVKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFGPSSLGSTTFASN 222
Query: 245 FSVKG--------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
S+ G + + LE R LAEPTL A+SGQSASF +G
Sbjct: 223 GSISGEYHNPLAQAFSLLFNFGKAGVGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLAG 282
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AG 346
G+ G TS+ +G+ L TPTVLS RI L++ E S+ +
Sbjct: 283 GELPVP-APQGLGTTSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSIGGV 341
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+P+ R+ADTTVEL G + ++ GL+ + +PLL +PILG FR +++
Sbjct: 342 AVPAITTRRADTTVELGDGESFIIGGLVSRTTTSNVDKVPLLGDLPILGTFFRQNKYQMS 401
Query: 407 ETEIFIAATPFLVKPVAMRDLSRP 430
E E+ I TP LVKP+A P
Sbjct: 402 EKELVILVTPHLVKPIARGTDLTP 425
>gi|330816715|ref|YP_004360420.1| Type II and III secretion system protein [Burkholderia gladioli
BSR3]
gi|327369108|gb|AEA60464.1| Type II and III secretion system protein [Burkholderia gladioli
BSR3]
Length = 477
Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 118/493 (23%), Positives = 195/493 (39%), Gaps = 63/493 (12%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L + +V+ L A+AA G + + + + ++Q V V DP
Sbjct: 5 LIALAIAVSALALSSWASAA---------GPEAGVDLAVGAQRQIASGRNLQRVAVGDPA 55
Query: 76 KADVVVH-SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
AD+++ + L GK+ G NV+L + + + A + D+
Sbjct: 56 VADILIIKGGGGVMLIGKSAGTTNVMLWERGRSEPTVYTVHVTSGAA------HALLNDA 109
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA----------------- 177
RV+ DT V+ G T++ QRAV+++ + Q +
Sbjct: 110 TPRVDTYGDTTVISGSANTLEAHQRAVDVANAAAAARAAAQQSSSAGGGQGKGQAVGRGG 169
Query: 178 --------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
+S+ V++ I+G + V + V + E R +KQ G + +
Sbjct: 170 GNGGGGGGDSAGPNVVDASTISGRNVVQVDVRVVEFSRSAIKQAGLNLFKSNNGFSFGSF 229
Query: 230 FAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLHALERATAIRTLAEPTL 277
+ + +V V L LE+ R LA+PTL
Sbjct: 230 APSSLQSSSYNPSAGLTVTAVSPITSAFNLVVGSTSRGIAGNLSVLEQNNLARILAQPTL 289
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
A+SGQSASF +GG+ V S G S+ YG+ L TPTVL P RI L++ E S
Sbjct: 290 VALSGQSASFLAGGEIPVP-VPQSLGTISIEYKPYGIGLTVTPTVLGPNRIALKVAPEAS 348
Query: 338 EPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
+ I +N+ +P+ R+ADTTVEL G + V+ GL+ + +P L +PI
Sbjct: 349 QLDFLNAITINSITVPALTTRRADTTVELGDGESYVIGGLVDRETTSNVSKVPFLGDLPI 408
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
+GA F++ + + + E+ TP LV P+A S P S + V + +
Sbjct: 409 IGAFFKSLNYQQNDKELVFVVTPHLVSPIAAGA-SLP----STPGEQSEQRDGPVWRSFL 463
Query: 454 PKEASEVEGQNYK 466
+
Sbjct: 464 GGILVPDAAPGFS 476
>gi|107100112|ref|ZP_01364030.1| hypothetical protein PaerPA_01001133 [Pseudomonas aeruginosa PACS2]
Length = 408
Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 93/421 (22%), Positives = 170/421 (40%), Gaps = 71/421 (16%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ + ++ + + L++ V ++ + + DP ADV + R + GK G ++++
Sbjct: 28 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 87
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ L + +E G V T
Sbjct: 88 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 108
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
G + + +++ N QV + EV R LKQ G +
Sbjct: 109 -------RGAPAFTVGAVEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 153
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274
+ + K ++G + + + ++ALE + TLA
Sbjct: 154 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 213
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++
Sbjct: 214 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 273
Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
EVSE I +P+ RVR+ DT+V L G + V++GL + + P L
Sbjct: 274 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 333
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446
IPILGA FR+++ ++++ E+ + TP LV+P+A P + ++ +F
Sbjct: 334 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 393
Query: 447 R 447
R
Sbjct: 394 R 394
>gi|91777217|ref|YP_552425.1| putative type II and III secretion system outermembrane protein,
secretin [Burkholderia xenovorans LB400]
gi|91689877|gb|ABE33075.1| Putative type II and III secretion system outermembrane protein,
secretin [Burkholderia xenovorans LB400]
Length = 595
Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 88/443 (19%), Positives = 171/443 (38%), Gaps = 19/443 (4%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+R +++ L A + A+AA +D + + + +V IL +P
Sbjct: 11 RRRVLPSVLVGMLLCEAAPAALAQTAQAAHAAYTAATDSPSASTRVLEMFRGEVRILHIP 70
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
++ + + + V ++ L G+ G ++++ G + + + ++
Sbjct: 71 GTIKRIAIGNGKLLTANVVDG-SLMLLGEQDGITSLVVWNDKGIALQTTVRIAKAEVNAS 129
Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
LR + + +R++ + +VL G++ + + + + +
Sbjct: 130 LEQLRAVLRSVAGLRIDAIGSNIVLSGVI-----HRDMAGTVKAATQEMKNVVDTTTFDE 184
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
A V KV I EV R + +G + + G
Sbjct: 185 GD------ALRKTVHFKVQIMEVTRTGQRNLGIAWDSAFRGPQIGGAASVATGAAKAITA 238
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
G + + + ++ LA P L SG +ASF +GGQ +
Sbjct: 239 GTSYFLAGIAS-NITSQINFAVENGDAYVLAAPELNTKSGGTASFLAGGQVPIPQS-GAL 296
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
G TS+ DYG+ L P V + I + TE+S+ V MP + R + + +
Sbjct: 297 GTTSIEYKDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYAGMPGFLTRNTSSDISM 356
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
+G T+ ++GL+ D G+P LS++PI+G LFR+ RF +++++ I TP + P
Sbjct: 357 RAGETLAISGLVSADAANDSNGMPFLSQVPIIGQLFRSDRFRAKKSDLVIFVTPVISDP- 415
Query: 423 AMRDLSRPDDHYSVEDDAKAFFF 445
+LS D + D F
Sbjct: 416 ---ELSPNTDLLARADKLDENFR 435
>gi|319779649|ref|YP_004130562.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella
equigenitalis MCE9]
gi|317109673|gb|ADU92419.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella
equigenitalis MCE9]
Length = 508
Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 84/396 (21%), Positives = 167/396 (42%), Gaps = 30/396 (7%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
K I + + ++ +L + V V + + + + LFG + G +
Sbjct: 27 AQTTNTPKAIKMEIGQIEVLNF-QSIGRVAVGNSKLLNATTSDDKELVLFGLSEGFTTLQ 85
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQR 159
+ G ++ + L ++R + N++ +++D V++ G + D ++
Sbjct: 86 VWDKGGSSSSYRVVIESANQNKLLKDIQRILNKIPNVKTSVIADKVIVEGDKLSDFDREK 145
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
V+L++ + + + + ++ + + V I E+ R ++Q+G +
Sbjct: 146 VVQLTKHY-------------PQIIDMSSQVGWDEMLMIDVQIVELPRQFVQQLGLRWGT 192
Query: 220 T------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALER 265
T GS++ + ++ ++ V G + + ++A+
Sbjct: 193 TAEGGVQIGATLEGSTAKKAFAYQSNLLANSVGNAGAIANPAFFGGINAFLNASINAMAV 252
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
LA+P LTA +G +A F +GG+ Y V A +V YGV L+ TP +
Sbjct: 253 EGQAVVLAQPQLTARNGTTAEFLAGGEVPYSMVDDKGQAQTV-FKPYGVSLNITPRIQRD 311
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
G + +I EVS +N P+ + R+ T SG IV++G + D Q +
Sbjct: 312 GTVRSKINVEVSTVDTSMNLNGGPALKTRRTSTEFNTKSGEPIVISGFISRDQMQSMTKV 371
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
P +++ PILG LF++ F ETE+ I P++VKP
Sbjct: 372 PGIAETPILGELFKSRNFQNNETELVIIVRPYVVKP 407
>gi|190574779|ref|YP_001972624.1| putative exported fimbriae assembly protein [Stenotrophomonas
maltophilia K279a]
gi|190012701|emb|CAQ46329.1| putative exported fimbriae assembly protein [Stenotrophomonas
maltophilia K279a]
Length = 451
Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats.
Identities = 104/436 (23%), Positives = 176/436 (40%), Gaps = 43/436 (9%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTMYLFGKNVGQANVILIGH 104
+ + + +P D++ V ++DP AD+V+ R L GK G ++L
Sbjct: 30 AADDLVLQAREQRPWTLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHR 89
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV-VLHGMVRTIQDSQRAVEL 163
+ L + ++ + SN V D +L G ++ + +
Sbjct: 90 KQAEPQRLQVRVQSAVQGAADA------GSNGLVFTQQDNQGLLQGSTDSVLSHMQEQKT 143
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ L + G A++ S + + + + + LKQIG S
Sbjct: 144 AAMALGKDGLLADASTVSSGGVVQVEVKVVE----------FNKTALKQIGISFQNRNGS 193
Query: 224 SGPSKSFAADFGGKFVSE-----------------GGDFSVKGVLDRFSFETVLHALERA 266
+ F + + + + L+
Sbjct: 194 FAYGFARPGGQLPGNTGILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSN 253
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
R LAEPTL A+SGQSASF +GG+ G T++T +G+ L TPTVL+P
Sbjct: 254 GMARVLAEPTLVALSGQSASFLAGGELP-ILEPQGLGTTTITYKPFGIGLTVTPTVLAPN 312
Query: 327 RIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
RI L++ E S+ N +PS R+ADTTVEL G + V+ GL+ ++
Sbjct: 313 RIALKVAPEASDLDYSNAIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSNV 372
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED--D 439
IPLL +PI+G+ FRN + R++ E+ I TP LV+P+A +L P + + +
Sbjct: 373 GKIPLLGDLPIIGSFFRNFDYKRQDKELVIIVTPRLVQPLARNTELPLPGEREAKPHMPE 432
Query: 440 AKAFFFNRVNKIYGPK 455
A+ +++ P
Sbjct: 433 WGAWLLGPISQDPVPG 448
>gi|83747917|ref|ZP_00944949.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551]
gi|207739458|ref|YP_002257851.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
gi|83725450|gb|EAP72596.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551]
gi|206592834|emb|CAQ59740.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
Length = 462
Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats.
Identities = 94/446 (21%), Positives = 174/446 (39%), Gaps = 48/446 (10%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
++ A + + G + + +++ ++ + + +P A
Sbjct: 4 AAVVRGWMGALALGCAALAPGVHAQSMPDGPVLHLLSGSQREIRLGKPLERIAIGNPEVA 63
Query: 78 DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
D ++ R ++ + K G A++++ G + ++ +E +
Sbjct: 64 DALLLKGRGAAGSLLIVAKKPGAASIMVWTQGGTAI-TYNVQVEAEARGA---------- 112
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
+ + + T VL G VR L+ + + +++ +A
Sbjct: 113 GSPDLAVQGGTAVLTGQVRD------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVP 166
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-------------- 239
V + V + E + +LK+ GF S T +
Sbjct: 167 GTVQVDVRVVEFSKTVLKEAGFSFSRTRGGFTFGAYSPSSLSQATPSWLSSTASSSSGLT 226
Query: 240 -----SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
F++ L +E R LAEP+L A+SGQSA+F +GG+
Sbjct: 227 VQSTQPVSTAFNLLLSSVSKGLFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIP 286
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPS 350
V + G T++ +G+ L +PT+LS RI L++ E S+ I +N +P+
Sbjct: 287 IP-VPQALGTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPA 345
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
R+ADTTVEL G + V+ GL+ + +P L +PI+G+ F+ +N+EE E+
Sbjct: 346 IVTRRADTTVELGDGESFVIGGLVSRTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEEREL 405
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSV 436
I TP LV+P+A P D
Sbjct: 406 VIIVTPRLVRPMARNA---PIDKMLP 428
>gi|311107631|ref|YP_003980484.1| type II and III secretion system family protein 2 [Achromobacter
xylosoxidans A8]
gi|310762320|gb|ADP17769.1| bacterial type II and III secretion system family protein 2
[Achromobacter xylosoxidans A8]
Length = 453
Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats.
Identities = 103/478 (21%), Positives = 186/478 (38%), Gaps = 41/478 (8%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M+ QRT + + A + + A + + IS+ + L
Sbjct: 1 MKKHQRT-------TMICLLSAAAAMTLGGLSLAQTAAPAAGANAPVRDISMAVKGQQSL 53
Query: 61 QVPVDV-QDVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDI 114
+ + + DP ADV V ++ L+GK G + + + ++
Sbjct: 54 VLDGGAPARIAIGDPDVADVKVLPATGKRAASVLLYGKKPGTTQLQIWTGNNAAPQIWNV 113
Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
+ ++ L V++ V+ G + + ++ + +
Sbjct: 114 RVG---GSVQGALASRGLGGGANVDIADGHAVVSGHAESQLGQIASATMAASAVGGEKNV 170
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
+++ + + + + V R ++K G + + S
Sbjct: 171 VDMSTAGTGGVVQVEVKVVE----------VSRSVMKAAGISFTASNGPWSGGSSTMPAS 220
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
G ++ G D +F L L+ R LAEPTL A++GQSASF +GG+
Sbjct: 221 LGGALASG----FSLFYDSNNFSARLRLLQTNGMARVLAEPTLVALTGQSASFLAGGELP 276
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---------NA 345
G +VT +G+ L TPTVLS RI L++ E SE +
Sbjct: 277 IPQA-GGLGTVNVTFKPFGIGLTVTPTVLSRDRISLKVAPEASELDYTNGIAINTSADTS 335
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P+ R R+ADTTVEL G + V++GL+ + + +P+L +PI+G+ FR+ +++
Sbjct: 336 TIIPALRTRRADTTVELGDGESFVISGLVSRQTKAMVNKVPMLGDLPIIGSFFRSVDYSQ 395
Query: 406 EETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
E+TE+ I TP LV+P+A L P D A + + G ++
Sbjct: 396 EDTELVIVVTPRLVRPIARGVALPLPGAKQEQTDTAFNAWGYYLTGPMGGQQMPGFSR 453
>gi|33596527|ref|NP_884170.1| putative secretory apparatus [Bordetella parapertussis 12822]
gi|33566296|emb|CAE37209.1| putative secretory apparatus [Bordetella parapertussis]
Length = 470
Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats.
Identities = 91/427 (21%), Positives = 156/427 (36%), Gaps = 36/427 (8%)
Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
R + M++ L + + + + + + +L
Sbjct: 12 RGWLPWMAVLLAGGSMLWTPGGRAASPAQPAV------------LRMEVGETQVLAAAG- 58
Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
V V V + V + LF + G ++V + G + ++ L
Sbjct: 59 VTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLRE 118
Query: 126 TLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
+ +A V +V+ G + D R L++ +
Sbjct: 119 EVAALLARIPRAHSSAVGAHIVIEGSQLSEDDHARIAALAQRYPEVLDFTG--------- 169
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGK 237
+ + V L V + E+ R L+++G + G+ + A G
Sbjct: 170 ----RVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGP 225
Query: 238 FVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
G+L L AL + LA+P L A SG +ASF +GG+ Y+
Sbjct: 226 LAGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYR 285
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
T++ YGV L TP + + G + RI+ E S + P+ R R+A
Sbjct: 286 ATDKEGNGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRA 344
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T + SG T+VL G L + ++G+P LS++P++GALF R ETE+ I TP
Sbjct: 345 VTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTP 404
Query: 417 FLVKPVA 423
+V P
Sbjct: 405 TIVSPSD 411
>gi|33601080|ref|NP_888640.1| putative secretory apparatus [Bordetella bronchiseptica RB50]
gi|33575515|emb|CAE32593.1| putative secretory apparatus [Bordetella bronchiseptica RB50]
Length = 470
Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats.
Identities = 92/427 (21%), Positives = 157/427 (36%), Gaps = 36/427 (8%)
Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
R + M++ L + + + + + + +L
Sbjct: 12 RGWLPWMAVLLAGGSMLWTPGGRAASPAQPAV------------LRMEVGETQVLAAAG- 58
Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
V V V + V + LF + G ++V + G + ++ L
Sbjct: 59 VTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLRE 118
Query: 126 TLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
+ +A R V +V+ G + D R L++ +
Sbjct: 119 EVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIAALAQRYPEVLDFTG--------- 169
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGK 237
+ + V L V + E+ R L+++G + G+ + A G
Sbjct: 170 ----RVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGP 225
Query: 238 FVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
G+L L AL + LA+P L A SG +ASF +GG+ Y+
Sbjct: 226 LSGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYR 285
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
T++ YGV L TP + + G + RI+ E S + P+ R R+A
Sbjct: 286 ATDKEGNGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRA 344
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T + SG T+VL G L + ++G+P LS++P++GALF R ETE+ I TP
Sbjct: 345 VTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTP 404
Query: 417 FLVKPVA 423
+V P
Sbjct: 405 TIVSPSD 411
>gi|149927033|ref|ZP_01915291.1| type II/III secretion system protein [Limnobacter sp. MED105]
gi|149824254|gb|EDM83474.1| type II/III secretion system protein [Limnobacter sp. MED105]
Length = 473
Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats.
Identities = 102/438 (23%), Positives = 176/438 (40%), Gaps = 46/438 (10%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
+ ++ +A I A + +++ ++ +P V + DP
Sbjct: 10 SVVAAISLIACAGLISPQVAVGQTPAAPSSAAPFVLTLSTGFQKVISLPGIPARVSIGDP 69
Query: 75 TKADVVVHSPR-------TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
T A V V P + + G G ++++ + + + A TL
Sbjct: 70 TIASVTVLKPTDRGGKNAGVLVTGLKTGSTSLLIWDRGASMARVITVSVTGKAAETISTL 129
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
+ ++ +E + L G + Q+A E S ++ ++++
Sbjct: 130 K------DLNLETEGQVLKLSGSTPNVSTYQQARE--------SLIKPGSDGKPAELIDQ 175
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----FAADFGGKFVSEG 242
I V + V + E R L+++G + + G + S + GG +
Sbjct: 176 ATIQTSGTVQVDVKVVEFTRSELQRLGINLTGQVNGGGFTYSIAGPASVSGSGGVSNAFS 235
Query: 243 GDFSVKGVLDRFSFETV---------------LHALERATAIRTLAEPTLTAISGQSASF 287
F+ G + + L+ L+ + LAEP+L A SGQ ASF
Sbjct: 236 LAFNGAGCVGEAVIGALNPTPVGPRTCDLVSGLNILQADGYAKVLAEPSLIAQSGQDASF 295
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGV 343
+GG+ V S G + +GV L FTPT+LS I LR+ EVS+ +
Sbjct: 296 LAGGEIPIP-VPSGNGTIGIEYKKFGVGLSFTPTILSNKTIALRVSPEVSDLDFSRGTSI 354
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+P+ R+A TTVEL + V+ GL+ +I +P LS+IPILGA F+ + +
Sbjct: 355 QGVLVPAILTRRASTTVELGENQSFVIGGLISRNIIANANRVPWLSEIPILGAFFKGNTY 414
Query: 404 NREETEIFIAATPFLVKP 421
+RE+ E+ I TP VKP
Sbjct: 415 SREDKELLIIVTPRFVKP 432
>gi|194366097|ref|YP_002028707.1| type II and III secretion system protein [Stenotrophomonas
maltophilia R551-3]
gi|194348901|gb|ACF52024.1| type II and III secretion system protein [Stenotrophomonas
maltophilia R551-3]
Length = 452
Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats.
Identities = 99/430 (23%), Positives = 172/430 (40%), Gaps = 41/430 (9%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTMYLFGKNVGQANVILIGH 104
+ + + +P D++ V ++DP AD+V+ R L GK G ++L
Sbjct: 31 AADDLVLQAREQRPWTLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHR 90
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
+ + + ++ + T + + +L G ++ + +
Sbjct: 91 KQAEPQRMQVRVQSAVQGAADT-----GSGGLVFTQQDNQGLLQGSTDSVLSHMQEQRTA 145
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
L + G ++ S + + + + + LKQIG +
Sbjct: 146 AMALGKDGTLADTSTISSGGVVQVEVKVVE----------FNKTALKQIGISFQNRNGNF 195
Query: 225 GPSKSFAADFGGKFVSE-----------------GGDFSVKGVLDRFSFETVLHALERAT 267
+ F + + + + L+
Sbjct: 196 AYGFARPGGQLPGNTGILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSNG 255
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
R LAEPTL A+SGQSASF +GG+ G T++T +G+ L TPTVL+P R
Sbjct: 256 MARVLAEPTLVALSGQSASFLAGGELP-ILEPQGLGTTTITYKPFGIGLTVTPTVLAPNR 314
Query: 328 IGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
I L++ E S+ N +PS R+ADTTVEL G + V+ GL+ ++
Sbjct: 315 IALKVAPEASDLDYSNAIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSSVG 374
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED--DA 440
IPLL +PI+G+ FRN + R++ E+ I TP LVKP+A +L P D + +
Sbjct: 375 KIPLLGDLPIIGSFFRNFDYKRQDKELVIIVTPRLVKPLARNTELPLPGDREAKPHMPEW 434
Query: 441 KAFFFNRVNK 450
A+ +++
Sbjct: 435 GAWLLGPISQ 444
>gi|187921506|ref|YP_001890538.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
gi|187719944|gb|ACD21167.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
Length = 561
Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats.
Identities = 87/443 (19%), Positives = 163/443 (36%), Gaps = 25/443 (5%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+R +++ L P A + + + +V IL VP
Sbjct: 11 RRRVMPSVLIGMLLCEA------APAALAQVGYSAAMASPSASTRVLEMFRGEVRILHVP 64
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
++ + + + V ++ L G+ G ++++ G + + + +++
Sbjct: 65 GTIKRIAIGNGKLVTANVVDG-SLMLLGERDGITSLVVWNEKGIALQTTVRIAKAEVSAS 123
Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
LR + S + ++ + +VL G++ + + + +
Sbjct: 124 VEQLRAVLQSVSGLHIDAIGSNIVLSGVI-----HRDMTGIVKAATQDMQNVIDTTKVDE 178
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
A V KV I EV R + +G + + G
Sbjct: 179 GD------ALRKTVHFKVQIMEVTRTGQRNLGIAWDSAFKGPQIGGAASVATGAAKAVTA 232
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
G + + + ++ LA P L SG +ASF +GG +
Sbjct: 233 GTSYFLAGIAS-NITSQINFAVENGDAYVLAAPELNTKSGGTASFLAGGTVPIPQS-GAL 290
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
G TSV DYG+ L P V + I + TE+S+ V G MP + R + + +
Sbjct: 291 GTTSVEYRDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYGGMPGFLTRNTTSDISM 350
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
+G T+ ++GL+ D G+P LSK+PI+G LFR+ F +++++ I TP + P
Sbjct: 351 RAGETLAISGLVSADAANDTTGMPFLSKVPIIGQLFRSDAFRAKKSDLVIFVTPVISDP- 409
Query: 423 AMRDLSRPDDHYSVEDDAKAFFF 445
+LS D + D F
Sbjct: 410 ---ELSPNADLLARADRLDKSFR 429
>gi|127511579|ref|YP_001092776.1| type II and III secretion system protein [Shewanella loihica PV-4]
gi|126636874|gb|ABO22517.1| type II and III secretion system protein [Shewanella loihica PV-4]
Length = 436
Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats.
Identities = 88/406 (21%), Positives = 166/406 (40%), Gaps = 32/406 (7%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
++ + + + + + + L +V+ ++V + V + + L G+ G
Sbjct: 14 LLLPASSMAHNNRPMKLYVG-AVELYKAANVERIVVGNGKVLSAKVVDNKGVLLIGEAPG 72
Query: 96 QANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
++ L DGK + +L + + + M + A ++ V +++ G +
Sbjct: 73 NTDLQLWQKDGKLIKLSLTVTPDNSLRTTTMVKKMLAAFPSLTVSESDGLIIVQGEA-DL 131
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
++ ++ E + +Y + V ++V I E + L +G
Sbjct: 132 AQKEQLEKILEGDPNVVSLVKYLKFAK---------TMSPMVKMQVKIVEFNKSTLNNVG 182
Query: 215 FQH--SITGSSSGPSKSFAADFGGKFVSEGG-----------------DFSVKGVLDRFS 255
+ S+ G + G +K F A+ S G +
Sbjct: 183 IKWETSMAGPAYGVAKGFTANPIFNVASPGQYTEAITKSITENIGVLDTRGWSSLGIVSG 242
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
+ + L R LA+P LT SG+SASF +GG+ ++V S GA V +YG+
Sbjct: 243 IGSQIQLLSEKGDARLLAQPNLTTRSGESASFLAGGEFPIRSV-SGLGAVDVEYKEYGIK 301
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
L P V I R+ EVS V +P R+ ++ + + + TIV++GL+
Sbjct: 302 LDIEPVVDEQQNIVSRVMAEVSSIDPSVAVDGVPGMLTRRTESVINVKNNETIVISGLVN 361
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
++ ++ PLL IPILG LF++ F ++TE+ I TP +V P
Sbjct: 362 SEMSKIVNKFPLLGDIPILGELFKSRDFKDDKTELVIFVTPVVVYP 407
>gi|229588195|ref|YP_002870314.1| putative type II secretion system protein [Pseudomonas fluorescens
SBW25]
gi|229360061|emb|CAY46915.1| putative type II secretion system protein [Pseudomonas fluorescens
SBW25]
Length = 405
Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats.
Identities = 106/452 (23%), Positives = 175/452 (38%), Gaps = 73/452 (16%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKI-------SIGLNKVIILQVPVDVQDVLVS 72
P + ++ + ++ G + +G LQ PV + + +
Sbjct: 6 APLFMHMAWALMLSSLPVGMALAAPGNCSALGQLPAVVEVGEGLQQELQSPVAITRLAIG 65
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
DP ADV V+ R L G G ++++ T R+ +
Sbjct: 66 DPKIADVRVNGDRHFLLTGVASGATSLMVW------------------TACASTPRQSM- 106
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
V + G + + + S ++
Sbjct: 107 ------------VFVKGRATSAL-----------------TSLSLSPSEDPLL------- 130
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVL 251
QV + EV R LK+ + TG + S + + G F S
Sbjct: 131 PSQVQTDIRFVEVSRTKLKEASTRLLGTGKNFFLGSPNLLSPSEGVFKLPVSTDSFNVGF 190
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+++ALER+ TLA P+L A+SGQSASF +GG+ S+ + S+ +
Sbjct: 191 GGGRVSAMINALERSGFAYTLARPSLVAMSGQSASFLAGGEVPVPVPSAGSDTISIEYKE 250
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGT 367
+G+ L TPTV+ RI L++ EVSE + +P+ VR+ DT+V L G +
Sbjct: 251 FGIRLTLTPTVIDRNRITLKVAPEVSELDYSNAVIIQGIQVPALTVRRTDTSVSLADGES 310
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
V++GL+ + + P L IPILGA FR+S +REE E+ + TP LV+P+A
Sbjct: 311 FVISGLISTNNRSTISKFPGLGDIPILGAFFRDSNISREEKELLMIVTPHLVQPLAANAQ 370
Query: 428 --SRPDDHYS--VEDDAKAFFF--NRVNKIYG 453
S P + + + FF ++ G
Sbjct: 371 LPSLPGEKLRSYDPNWFRLFFLENGNFDRRSG 402
>gi|238027562|ref|YP_002911793.1| type II and III secretion system protein [Burkholderia glumae BGR1]
gi|237876756|gb|ACR29089.1| Type II and III secretion system protein [Burkholderia glumae BGR1]
Length = 476
Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats.
Identities = 110/492 (22%), Positives = 190/492 (38%), Gaps = 62/492 (12%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L + +++ + ANAA ++ + + + + +Q V + DP
Sbjct: 5 LIALAMAMSAVMASAVANAAGLDAG---------VDLAVGAQRQIATGRSLQRVAIGDPA 55
Query: 76 KADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
ADV+V + L GK+ G NV+L + + + A + +
Sbjct: 56 VADVLVVKGNGGGVLLIGKSAGTTNVMLWERGRSEPDVYPVHVTSGAA------KALLGP 109
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------------ 181
RV+ DT V+ G T++ QRAV+++ + Q +
Sbjct: 110 DTPRVDTYGDTTVIAGSATTLEAHQRAVDVANAAAAARAAAQAGGGGAAAAAGVGGKTAG 169
Query: 182 -----------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
V++ I+G + V + V + E R +KQ G + +
Sbjct: 170 AGGMGGAGGAAPSVVDASTISGRNVVQVDVRVVEFSRSAVKQAGLNFFKSSNGFAFGSFA 229
Query: 231 AADFG------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ F++ + L LE+ R LA+PTL
Sbjct: 230 PSSLSSLGSSATSGLAVTAAQPIASAFNLVVGSASRGISSNLSILEQNNLARILAQPTLV 289
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
A+SGQSA+F +GG+ V + G S+ YG+ L PTVL P RI L++ E S+
Sbjct: 290 ALSGQSANFLAGGEIPVP-VPQALGTVSIEWKPYGIGLTVAPTVLGPNRIALKVAPEASQ 348
Query: 339 PV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
I +N +P+ R+ADTTVEL G + V+ GL+ + +P L +PI+
Sbjct: 349 LDFVNAITINGVTVPALTTRRADTTVELGDGESYVIGGLVDRETTSNLSKVPFLGDLPII 408
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
GA F++ + + + E+ I TP LV P+A + P + + V + +
Sbjct: 409 GAFFKSLSYQQNDKELVIIVTPHLVSPIAAGT-TLP----AAPGELSEQRDGPVWRSFLG 463
Query: 455 KEASEVEGQNYK 466
+
Sbjct: 464 GMLVPDAAPGFS 475
>gi|319795779|ref|YP_004157419.1| type II and iii secretion system protein [Variovorax paradoxus EPS]
gi|315598242|gb|ADU39308.1| type II and III secretion system protein [Variovorax paradoxus EPS]
Length = 462
Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 107/466 (22%), Positives = 178/466 (38%), Gaps = 64/466 (13%)
Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
P I A + N + + +G L + + + ++D T A V +
Sbjct: 35 APGIWPAASVAANATPPPRQSQIPLVVGAGTQQELLIQKGIDRLAIADETVAGVTITRKT 94
Query: 86 ------TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
+ + GK G+ +++ + + R +
Sbjct: 95 PNSPAARLIITGKTAGRTTLMVWEKGSASATTYALEVRRRAS------------------ 136
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
L G + ++ + Q+A + + G + ++N+ + V ++
Sbjct: 137 ------TLTGTLDSMVEHQQARDAASA-----GAGDKTPLVDRSIVNV----RSNTVQVE 181
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------GGD 244
V + E R +LKQ G T ++S G S
Sbjct: 182 VKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFSPAGLKSSTFASDGSINGEYNNPLAQA 241
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
FS+ + + LE R LAEPTL A+SGQSASF SGG+ V G
Sbjct: 242 FSLLFNFGKAGIGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLSGGELPVP-VPQGLGT 300
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360
TS+ +G+ L TPTVLS RI L++ E S+ + +N +P+ R+ADTTV
Sbjct: 301 TSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSINGIAVPAISTRRADTTV 360
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
EL G + ++ GL+ + +PLL +PILG+ F+ +++ E E+ I TP LVK
Sbjct: 361 ELGDGESFIIGGLVSRTTTSNADKVPLLGDLPILGSFFKQNKYQMSEKELVILVTPHLVK 420
Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
P+A P Y + V + Y A+ +
Sbjct: 421 PIARGTDLAP---YLPGTAEQR--DGAVWRSYFLGGAAGTAVPGFS 461
>gi|187478776|ref|YP_786800.1| pilus assembly protein [Bordetella avium 197N]
gi|115423362|emb|CAJ49896.1| putative pilus assembly protein [Bordetella avium 197N]
Length = 426
Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 95/391 (24%), Positives = 149/391 (38%), Gaps = 34/391 (8%)
Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
+ + ++ + + + +L P V + V + + LF + G +
Sbjct: 21 SPAYSAARTQHELVLEVGETRVLDAPG-VTRIAVGSGQVVQAQAVDGKEVILFARKEGVS 79
Query: 98 NVILI-GHDGKQMLNLDILIERD--IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
+V + G G + L ++ I L + + V V +V+ G
Sbjct: 80 SVHVWRGQSGVRAYALRVMPAGFGHIRAEVEQLLAAMPALRLSV--VGHHLVIEGSGLPD 137
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
D QR L++ + + E V L V + E+ R L ++G
Sbjct: 138 HDKQRISALAQRYPEVLDLTGD-------------VGWEQMVLLDVQVVELPRARLTELG 184
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
S+ S P +S A +G S L AL + LA
Sbjct: 185 MHWSMGAEGSHPVRSHAGVWGSLQWSGAA------------IGARLQALAQRGEAVFLAR 232
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P L A SG +ASF +GG+ Y + S YGV L TP + G I I+
Sbjct: 233 PRLLARSGSAASFLAGGEVPY---RGAESEASTVFKPYGVSLKITPRIDPRGTIRSHIEV 289
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
E S + P+ R R+A+T +PSG T+VL G L ++ G+P LS IP+L
Sbjct: 290 ESSSIDPTLTVPAGPAMRTRRAETEFNVPSGQTLVLGGFLGRELSSETRGVPWLSDIPVL 349
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR 425
G LF R +TE+ I TP +V+P
Sbjct: 350 GLLFGERRQQNRDTELAIFVTPTIVRPDDPA 380
>gi|170725113|ref|YP_001759139.1| type II and III secretion system protein [Shewanella woodyi ATCC
51908]
gi|169810460|gb|ACA85044.1| type II and III secretion system protein [Shewanella woodyi ATCC
51908]
Length = 436
Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 86/392 (21%), Positives = 162/392 (41%), Gaps = 32/392 (8%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+ + + V + +V+ ++V + V + + L ++ G +V L DGK +
Sbjct: 28 LKLYMGAVELYNAK-NVERIVVGNGKVLSAKVIDDKGVLLIAESPGNTDVQLWQKDGKLI 86
Query: 110 L-NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
++ + + + + + A +I+V +++ G + ++ + E
Sbjct: 87 KLSISVTPDNSLKTTDTIKKMLAAFPSIKVTENDGLIIVQGEA-DLSQKEQLETIIEADP 145
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGP 226
+ +Y + + ++V I E + L IG + S+ G + G
Sbjct: 146 NVVSLIKYLKFAK---------TMAPMIKMQVKIVEFNKSTLNNIGIKWESSMAGPAYGA 196
Query: 227 SKSFAADFGGKFVSEGG-----------------DFSVKGVLDRFSFETVLHALERATAI 269
+K+F+A+ S G + + L
Sbjct: 197 AKAFSANPIFSVSSPGQYSETITSAITDSIGVLDTRGWNYFGIVTGIGSQIQLLSEKGDA 256
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
R LAEP LT SG+SA+F +GG+ ++V S GA V +YG+ L P V I
Sbjct: 257 RMLAEPNLTTRSGESANFLAGGEFPIRSV-SGLGAVDVEYKEYGIKLDIEPVVDDDLNIV 315
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
R+ EVS V +P R+ ++ + + + TIV++GL+ ++ ++ PLL
Sbjct: 316 SRVMAEVSSIDPSVAVDGIPGMLTRRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLG 375
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421
IPILG LF++ F ++E+ I TP +V P
Sbjct: 376 DIPILGELFKSRDFKDNKSELVIFVTPTVVYP 407
>gi|92113782|ref|YP_573710.1| type II and III secretion system protein [Chromohalobacter
salexigens DSM 3043]
gi|91796872|gb|ABE59011.1| type II and III secretion system protein [Chromohalobacter
salexigens DSM 3043]
Length = 483
Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats.
Identities = 94/429 (21%), Positives = 162/429 (37%), Gaps = 51/429 (11%)
Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
+ + + L V + D A + R + L G G ++ +
Sbjct: 61 AQQGESTLRLDIGDQQRLVFERPVSRTALGDGDIASAQMVDARQLLLTGLAAGTTSLSVW 120
Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
+ + A +S + +DT L G ++ +A
Sbjct: 121 RDGRDAPQRYRVSVRPRGARGM--------ESEYTLADGTDTPTLAGESESLARHAQA-- 170
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
+ + ++ G QV + + EV R L+ GF
Sbjct: 171 -------------RSRLGDQNTVDATRQTGPVQVQTDIRVVEVNRSKLQSAGFFFGKNNG 217
Query: 223 SS-------------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
+ S+ F+ G F + G +++ S V+ AL
Sbjct: 218 GNTLIGVGTSGALGGAEAVGDSFSEGFSFLTGSGFQTGNGGYNIVVGNANDSVLGVISAL 277
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
TLAEP+L +SGQSASF +GG+ + VS+ G + ++GV L TPTVL
Sbjct: 278 RSNGFAYTLAEPSLVTLSGQSASFLAGGEFPFP-VSNDDGDVRIDFKEFGVRLQLTPTVL 336
Query: 324 SPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
I L++ EVSE + +P+ VR+ DT+V+L G +++++GL+ +
Sbjct: 337 DSNSIMLKVAPEVSELDFTQGVEASGVAVPALNVRRTDTSVQLGDGESLIISGLVSNSTM 396
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS-- 435
Q + P L +P++GA FR++RF + E+ + TP LV P+A P +
Sbjct: 397 QTVDKFPGLGDLPVIGAFFRSTRFETQNKELVMIVTPHLVAPMAAGAPRPELPGEALRRY 456
Query: 436 VEDDAKAFF 444
+ F
Sbjct: 457 DPSYLELLF 465
>gi|73539231|ref|YP_299598.1| type II and III secretion system protein [Ralstonia eutropha
JMP134]
gi|72122568|gb|AAZ64754.1| type II and III secretion system protein [Ralstonia eutropha
JMP134]
Length = 469
Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats.
Identities = 93/440 (21%), Positives = 171/440 (38%), Gaps = 57/440 (12%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
T+++ L ++ A + A + + + ++ ++
Sbjct: 21 MKTLLAAMLATAMLVTAIPRATAQEAAPAPS----------TLRLMAGAQKEIRPAQPIE 70
Query: 68 DVLVSDPTKADVVVHSPRT----MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
V V +P AD ++ R+ + + K G ++++ G + ++
Sbjct: 71 RVAVGNPAVADALLIKQRSGPPGVLVVAKQPGVTDLMIWPR-GAAQQTYTVQVDAITPDT 129
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+NI V T+ G R + + +
Sbjct: 130 --------GGANIAYSAVGATI--TGQSRDAYAA----------ARAQTAARVGSGKGGV 169
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------GP 226
V++ + + V + V + E+ + +LK++G S G
Sbjct: 170 VVDRSTVPVSNTVQVDVKVVEISKTVLKEVGINFFRNNSGFAFGSFSPSTLSKFTFTPGT 229
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ + F++ F + LE R LAEP+L A+SGQSAS
Sbjct: 230 GGANGSFSADITTPISNAFNLVAASLSHGFFANISLLEANGLARVLAEPSLVALSGQSAS 289
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---- 342
F SGG+ V + G T++ +G+ L +PTVLS RI L++ E S+
Sbjct: 290 FLSGGEIPIP-VPQALGTTTIQFKPFGIGLTVSPTVLSDQRIALKVAPEASDLDPSRGIA 348
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+N +P+ R+ADTT+EL G + V+ GL+ + +P L +P++G F+N
Sbjct: 349 INGAIVPAIVTRRADTTIELGDGESFVIGGLVSRNTVSNVNKVPFLGDLPVIGPFFKNLN 408
Query: 403 FNREETEIFIAATPFLVKPV 422
F++E+ E+ I TP LVKP+
Sbjct: 409 FHQEDRELMIVVTPRLVKPL 428
>gi|33593025|ref|NP_880669.1| putative type II secretion system protein [Bordetella pertussis
Tohama I]
gi|33563400|emb|CAE42276.1| putative type II secretion system protein [Bordetella pertussis
Tohama I]
gi|332382437|gb|AEE67284.1| putative type II secretion system protein [Bordetella pertussis CS]
Length = 449
Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats.
Identities = 110/423 (26%), Positives = 177/423 (41%), Gaps = 41/423 (9%)
Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILI 102
+++ + + L++ V ++DP ADV V P + L G+ G + +
Sbjct: 40 RELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVW 99
Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
+ + + + ++ L R +V+M D+ V+ GM + +
Sbjct: 100 SRGSRDPQVWTVRV---LPQVQAALARRGVGGGAQVDMAGDSGVVTGMAPSAEAH----- 151
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
+ A + KV+++ I V ++V + E+ R ++K +G
Sbjct: 152 -----RGAAEAAAAAAGGNDKVVDMSQINTSGVVQVEVKVVELARSVMKDVGINFRADSG 206
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
S D G F L L+ R LAEPTL A+SG
Sbjct: 207 PWSGGVSLLPDL------ASGGMFGMLSYTSRDFSASLALLQNNGMARVLAEPTLLAMSG 260
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
QSASF +GG+ VS+ G TSV +G+ L TPTV+S RI L++ E SE
Sbjct: 261 QSASFLAGGEIPIP-VSAGLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYA 319
Query: 343 VNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
+ P+ R RKADT VEL G T V++GL+ + +PLL +PI
Sbjct: 320 NGISSIDSNNRITVIPALRTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPI 379
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKA-----FFFNR 447
+GA FRN ++++E+ E+ I TP LV+P+A L P DA +
Sbjct: 380 IGAFFRNVQYSQEDRELVIVVTPRLVRPIARGVTLPLPGAR-QEVSDAGFNAWGYYLLGP 438
Query: 448 VNK 450
++
Sbjct: 439 MSG 441
>gi|33596969|ref|NP_884612.1| putative type II secretion system protein [Bordetella parapertussis
12822]
gi|33600811|ref|NP_888371.1| putative type II secretion system protein [Bordetella
bronchiseptica RB50]
gi|33566420|emb|CAE37673.1| putative type II secretion system protein [Bordetella
parapertussis]
gi|33568411|emb|CAE32323.1| putative type II secretion system protein [Bordetella
bronchiseptica RB50]
Length = 448
Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats.
Identities = 110/423 (26%), Positives = 177/423 (41%), Gaps = 41/423 (9%)
Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILI 102
+++ + + L++ V ++DP ADV V P + L G+ G + +
Sbjct: 39 RELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVW 98
Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
+ + + + ++ L R +V+M D+ V+ GM + +
Sbjct: 99 SRGSRDPQVWTVRV---LPQVQAALARRGVGGGAQVDMAGDSGVVTGMAPSAEAH----- 150
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
+ A + KV+++ I V ++V + E+ R ++K +G
Sbjct: 151 -----RGAAEAAAAAAGGNDKVVDMSQINTSGVVQVEVKVVELARSVMKDVGINFRADSG 205
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
S D G F L L+ R LAEPTL A+SG
Sbjct: 206 PWSGGVSLLPDL------ASGGMFGMLSYTSRDFSASLALLQNNGMARVLAEPTLLAMSG 259
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
QSASF +GG+ VS+ G TSV +G+ L TPTV+S RI L++ E SE
Sbjct: 260 QSASFLAGGEIPIP-VSAGLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYA 318
Query: 343 VNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
+ P+ R RKADT VEL G T V++GL+ + +PLL +PI
Sbjct: 319 NGISSIDSNNRITVIPALRTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPI 378
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKA-----FFFNR 447
+GA FRN ++++E+ E+ I TP LV+P+A L P DA +
Sbjct: 379 IGAFFRNVQYSQEDRELVIVVTPRLVRPIARGVTLPLPGAR-QEVSDAGFNAWGYYLLGP 437
Query: 448 VNK 450
++
Sbjct: 438 MSG 440
>gi|323525746|ref|YP_004227899.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
gi|323382748|gb|ADX54839.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
Length = 474
Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats.
Identities = 108/481 (22%), Positives = 180/481 (37%), Gaps = 51/481 (10%)
Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
+ + + ++ + G + + I + L ++ V + DP+ ADV+V
Sbjct: 1 MTALLCGASMAVSPAGFAAGGAQALDIVVGSQQSLASGHTLRRVAIGDPSVADVLVIRGD 60
Query: 86 T---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
+ L GK+ G NV+L L+ + + A + + V+++
Sbjct: 61 RTGGVLLIGKSPGSTNVMLWEQGKDAPLSYVVNVSSPAA------KSLLGPDTPSVKVLG 114
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-------- 194
DT ++ G T++ QRAV + Q A + A
Sbjct: 115 DTALISGSAPTMEAHQRAVAAAGIEAHQRATLGSAAKGGTGGKAGVASALAGADAANGGA 174
Query: 195 -------QVTLKVTIA------------EVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
Q+ T+A E R +LKQ+G + +
Sbjct: 175 SGGESGTQIYDSSTVATRSVVQVDVRVVEFSRTVLKQVGLNILKQNNGFTFGSFAPSALS 234
Query: 236 GKFVSEG----------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
F++ L +E R LAEPTL A+SGQSA
Sbjct: 235 SATYGATPTFNSVAPISSAFNLVFNSATHGLFADLSLMESNNLARILAEPTLVALSGQSA 294
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----I 341
SF +GG+ + G TS+ YGV L TPTVLSP RI L++ E S+ +
Sbjct: 295 SFLAGGEIPVP-IPQGLGTTSIEYKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAV 353
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
++ +P+ R+ DTTVEL G + V+ GL+ + +PLL +P++GA F+
Sbjct: 354 TISGVSVPAITTRRTDTTVELGDGESFVIGGLIDRETISNVAKVPLLGDLPVIGAFFKQL 413
Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
+ + + E+ I TP LV P+A E + + + + A
Sbjct: 414 NYQQNDKELVIIVTPHLVSPLAKGATLPATPGEQSEQRNAPVWRSLLGGVAARDAAPGFS 473
Query: 462 G 462
Sbjct: 474 K 474
>gi|296158514|ref|ZP_06841344.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
gi|295891082|gb|EFG70870.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
Length = 590
Score = 223 bits (567), Expect = 7e-56, Method: Composition-based stats.
Identities = 85/443 (19%), Positives = 167/443 (37%), Gaps = 28/443 (6%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+R +++ L A A +D + + + +V IL +P
Sbjct: 11 RRRILPSVLVGMLLC---------EAVPAALAQAAATDSLSAGTRVLEMFRGEVRILHIP 61
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
++ + + + V ++ L G+ G ++++ G + + + ++
Sbjct: 62 GTIKRIAIGNGKLLTANVVDG-SLMLLGEQDGITSLVVWNDKGIALQTTVRIAKAEVNAS 120
Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
LR + + +R++ + ++VL G++ + + + + +
Sbjct: 121 LEQLRAVLKSVAGLRIDAIGSSIVLSGVI-----HRDMAGIVKAATQDMKNVVDTTTVDE 175
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
A V KV I EV R + +G + + G
Sbjct: 176 GD------ALRKTVHFKVQIMEVTRTGQRNLGIAWDSAFKGPQIGGAASVATGAAKAVTA 229
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
G + + + ++ LA P L SG +ASF +GGQ +
Sbjct: 230 GTSYFLAGIAS-NITSQINFAVENGDAYVLAAPELNTKSGGTASFLAGGQVPIPQS-GAL 287
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
G TS+ DYG+ L P V + I + TE+S+ V MP + R + + +
Sbjct: 288 GTTSIEYKDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYAGMPGFLTRNTSSDISM 347
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
+G T+ ++GL+ D G+P LS++PI+G LFR+ F +++++ I TP + P
Sbjct: 348 RAGETLAISGLVSADAANGSNGMPFLSQVPIIGQLFRSDSFRAKKSDLVIFVTPVISDP- 406
Query: 423 AMRDLSRPDDHYSVEDDAKAFFF 445
+LS D + D F
Sbjct: 407 ---ELSPNTDLLARADKLDENFR 426
>gi|254479855|ref|ZP_05093103.1| general secretion pathway protein D [marine gamma proteobacterium
HTCC2148]
gi|214039417|gb|EEB80076.1| general secretion pathway protein D [marine gamma proteobacterium
HTCC2148]
Length = 677
Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats.
Identities = 92/498 (18%), Positives = 174/498 (34%), Gaps = 74/498 (14%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
L + L P A + +NA +I+ I + K I +++ + +
Sbjct: 132 RLDNISAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDVSANIDRIKDIIQRMDRSAVQKT 191
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN----VILIGHDGKQMLNLDILIER 118
+ V+D A + + K G A ++ +++ D +
Sbjct: 192 DIIKLRYAVADDVVAMLDKLNKSE----AKQSGGAEPEVLLVADSRTNSVLVSGDEMERA 247
Query: 119 DIAHLEMTLRRFIADS-NIRV------EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
++ L L + S N+RV E VL +++ I + A ++ +++
Sbjct: 248 RMSQLIKHLDTPLEQSGNVRVVYLEYAEAKEIAEVLTRVMQNINSLENADGKAQRSNAKT 307
Query: 172 GRNQYANS--------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
+ + + V++ L+I QV ++ I E+ + +G Q
Sbjct: 308 ATIEADEGTNSLIITAETDEMAAIESVIHRLDIR-RAQVLVEAIIVEMTFSEGQDLGLQW 366
Query: 218 SITGSSSGPSKSFAADF--------------------------------GGKFVSEGGDF 245
+ SG S G + G
Sbjct: 367 LFANTDSGFYGSNINSPSQAQQLAGALNPDNGDEATPSNDSEFDVGALAGALASTPGLSL 426
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302
V D + +L+AL+ L+ P+L + Q A T G + T S +
Sbjct: 427 GWGSVDDDLTMTVILNALKTQGNANILSTPSLLTLDNQEAFITVGQNVPFITGSYTNSGS 486
Query: 303 ------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRV 353
++ + G+ L TP + + L I+ EVS +IG + +
Sbjct: 487 SDGASNPFQTIERENVGITLAVTPHINEGDSVVLEIEQEVSNVIIGASQISEAADIITSE 546
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
RK T V +VL GL++D++Q ++ +P+L IP LG LFR + +T + I
Sbjct: 547 RKIQTKVLAQDSKVVVLGGLIEDNVQDGQQKVPILGDIPFLGRLFRTDSVDVSKTNLLIF 606
Query: 414 ATPFLVKPVAMRDLSRPD 431
P +++ A D + D
Sbjct: 607 IRPTIIRDNAQLDGATAD 624
>gi|330953053|gb|EGH53313.1| type II and III secretion system protein [Pseudomonas syringae Cit
7]
Length = 416
Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats.
Identities = 97/461 (21%), Positives = 164/461 (35%), Gaps = 81/461 (17%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L + + A P A + + I ++ V + + V DP
Sbjct: 12 SLLALVIA-ALCAPGAWAASGSCAGLAAMPAA---VEIDQGIQQEVRSAVPITRIAVGDP 67
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
ADV V+ L G G ++++ R+ +
Sbjct: 68 KIADVHVNGTDGFLLTGVAQGTTSLMVW------------------TACASAPRQSM--- 106
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
V + G T ++ L
Sbjct: 107 ----------VFVRGRATTAMVESVTAPSADAQL------------------------PS 132
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------ 242
QV + EV R LK+ GS++ + G
Sbjct: 133 QVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTPGTVSGTRPNIPLNN 192
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+F++ +++A+E + TLA P+L A++GQSASF +GG+ +
Sbjct: 193 SNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEG 252
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADT 358
S+ ++GV L TPTV+ RI L++ EVSE I + +P+ +R+ DT
Sbjct: 253 NGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDT 312
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
++ L G + V++GL+ + P L IPILGA FR+S+ R+E E+ + TP L
Sbjct: 313 SIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHL 372
Query: 419 VKPVAMRD--LSRPDDHYS--VEDDAKAFFF--NRVNKIYG 453
V+P+A S P + + +F ++ G
Sbjct: 373 VQPLAANARLPSLPGEGLRTYDPSFPRLYFLENGDFDRRDG 413
>gi|330895618|gb|EGH27925.1| type II and III secretion system protein [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 416
Score = 219 bits (558), Expect = 8e-55, Method: Composition-based stats.
Identities = 97/460 (21%), Positives = 163/460 (35%), Gaps = 81/460 (17%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L + + A P A + + I ++ V + + V DP
Sbjct: 13 LLALVIA-ALCAPGAWAASGSCAGLAAMPAA---VEIDQGIQQEVRSAVPITRIAVGDPK 68
Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
ADV V+ L G G ++++ R+ +
Sbjct: 69 IADVHVNGTDGFLLTGVAQGTTSLMVW------------------TACASAPRQSM---- 106
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
V + G T ++ L Q
Sbjct: 107 ---------VFVRGRATTAMVESVTAPSADAQL------------------------PSQ 133
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGG 243
V + EV R LK+ GSS+ +
Sbjct: 134 VQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNS 193
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+F++ +++A+E + TLA P+L A++GQSASF +GG+ +
Sbjct: 194 NFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGN 253
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359
S+ ++GV L TPTV+ RI L++ EVSE I + +P+ +R+ DT+
Sbjct: 254 GISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTS 313
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ L G + V++GL+ + P L IPILGA FR+S+ R+E E+ + TP LV
Sbjct: 314 IALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLV 373
Query: 420 KPVAMRD--LSRPDDHYS--VEDDAKAFFF--NRVNKIYG 453
+P+A S P + + +F ++ G
Sbjct: 374 QPLAANARLPSLPGEGLRTYDPSFPRLYFLENGDFDRRDG 413
>gi|317403496|gb|EFV84000.1| hypothetical protein HMPREF0005_03138 [Achromobacter xylosoxidans
C54]
Length = 458
Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats.
Identities = 109/474 (22%), Positives = 182/474 (38%), Gaps = 35/474 (7%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
L + A + + A + + I++ + L +
Sbjct: 1 MMRFQRTTLICVLSAAAAMTCGAASLAQTAPAAGA-SAPARDIAVAVKGQQALMLDGAPV 59
Query: 68 DVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
+ + DP ADV V + ++ L+GK G + + + + ++
Sbjct: 60 RIAIGDPDVADVKVLAASGKRQASVLLYGKKAGTTQLQIWTGANAAPQVWTVRVAGNVQQ 119
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
+ M R +N+ V + V+ G + Q +V + + + + S
Sbjct: 120 V-MAGRGVAGGANVDV--AGERAVVSGQAESPLTHQASVAAAGAAVGDKNVVDVSTAGSG 176
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGKF 238
V+ + E R ++KQ G + G + S D G
Sbjct: 177 GVVQVEVKVVEV-----------SRSVMKQAGISFAGRSGPWGSTNSITPDGFPAPLGFN 225
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
D F L L+ R LAEPTL A++GQSASF +GG+
Sbjct: 226 KGAALASGFSLFYDSNDFSARLRLLQNNGMARVLAEPTLVALTGQSASFLAGGELPIPEA 285
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMP 349
G T+VT +G+ L TPTVLS RI L++ E SE + +P
Sbjct: 286 -GGLGTTTVTFKPFGIGLTVTPTVLSRERIALKVAPEASELDYSNAIAVSNGTNSTTLIP 344
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ R R+ADTTVEL G + V++GL+ + L +P+L +PI+G+ FR+ + +E+TE
Sbjct: 345 ALRTRRADTTVELGDGESFVVSGLVSRQTRALVNKVPMLGDLPIIGSFFRSVDYTQEDTE 404
Query: 410 IFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
+ I TP LV+P+A L P D A + + G ++
Sbjct: 405 LVIVVTPRLVRPIARGVTLPLPGAKQEAADTAFNAWGYYLMGPVGGQQMPGFSR 458
>gi|70734199|ref|YP_257839.1| type II/III secretion system protein [Pseudomonas fluorescens Pf-5]
gi|68348498|gb|AAY96104.1| bacterial type II/III secretion system protein [Pseudomonas
fluorescens Pf-5]
Length = 417
Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats.
Identities = 98/440 (22%), Positives = 168/440 (38%), Gaps = 76/440 (17%)
Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
+A AA + + IG LQ V + + V DP ADV + L
Sbjct: 24 QALAAAVAGCSSLAPLPAALEIGEGLQQELQSAVAITRLAVGDPKIADVQTTGNKAFLLT 83
Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G G ++++
Sbjct: 84 GMAPGATSLMVWTACASTP----------------------------------------- 102
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
++++ + + +S ++ QV + EV R L
Sbjct: 103 -------RQSMVFVQGRATADMSTGRLPASDDPLL-------PSQVQTDIRFVEVSRTKL 148
Query: 211 KQ-----IGFQHSITGSSSGPSKSFAADFGGKFVSEGG--------DFSVKGVLDRFSFE 257
K+ G H+ + G + G + GG + +
Sbjct: 149 KEASVSIFGRGHNFLFGAPGTAPVTGGTSGSVTPTFGGRRTNIPLDNGTFNIGFGNGRVL 208
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
T+++ALE + TLA P+L A+SGQSASF +GG+ S+ + + ++ ++G+ L
Sbjct: 209 TLINALEGSGFAYTLARPSLVALSGQSASFLAGGEIPIPVPSTGSNSVTIEYKEFGIRLT 268
Query: 318 FTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
TPT++ GRI L++ EVSE + + +P+ VR+ DT++ L G + V++GL
Sbjct: 269 LTPTIVDRGRISLKVAPEVSELDYSNAVTIAGTQVPALTVRRTDTSISLADGESFVISGL 328
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPD 431
+ + P L IP+LGA FR++ NREE E+ + TP LV+P+A + P
Sbjct: 329 ISTNNSSQVNKFPGLGDIPVLGAFFRDTTINREERELLMVVTPHLVQPLAADAKLPALPG 388
Query: 432 DHYS--VEDDAKAFFFNRVN 449
+ + + FF N
Sbjct: 389 ERLRNYDPNFYRMFFLENGN 408
>gi|330976799|gb|EGH76834.1| type II and III secretion system protein [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 416
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 97/460 (21%), Positives = 163/460 (35%), Gaps = 81/460 (17%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L + + A P A + + I ++ V + + V DP
Sbjct: 13 LLALVIA-ALCAPGAWAASGSCAGLAAMPAA---VEIDQGIQQEVRSAVPITRIAVGDPK 68
Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
ADV V+ L G G ++++ R+ +
Sbjct: 69 IADVHVNGTDGFLLTGVAQGTTSLMVW------------------TACASAPRQSM---- 106
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
V + G T ++ L Q
Sbjct: 107 ---------VFVRGRATTAMVESVTAPSADAQL------------------------PSQ 133
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGG 243
V + EV R LK+ GSS+ +
Sbjct: 134 VQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNS 193
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+F++ +++A+E + TLA P+L A++GQSASF +GG+ +
Sbjct: 194 NFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGN 253
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359
S+ ++GV L TPTV+ RI L++ EVSE I + +P+ +R+ DT+
Sbjct: 254 GISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTS 313
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ L G + V++GL+ + P L IPILGA FR+S+ R+E E+ + TP LV
Sbjct: 314 IALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLV 373
Query: 420 KPVAMRD--LSRPDD--HYSVEDDAKAFFF--NRVNKIYG 453
+P+A S P + + +F ++ G
Sbjct: 374 QPLAANARLPSLPGEALRTYDPSFPRLYFLENGDFDRRDG 413
>gi|237653358|ref|YP_002889672.1| type II and III secretion system protein [Thauera sp. MZ1T]
gi|237624605|gb|ACR01295.1| type II and III secretion system protein [Thauera sp. MZ1T]
Length = 479
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 98/443 (22%), Positives = 170/443 (38%), Gaps = 39/443 (8%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+R ++ L P A+AA + +I + + +L
Sbjct: 12 RRRALPPLVCAILILGLP--GPSRAAPPASAAPPEPGRAALAVVHEIQMFAGETRVLP-Q 68
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
D Q + V D V R + L G + + G+ + + D A +
Sbjct: 69 RDAQRLAVGDAKVLSAAVLDDREILLIANGPGDTMLQVWTRSGRSQRIKITVRQTDTARI 128
Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
L+ F+ D +R + D VV+ G + + + EL++ F
Sbjct: 129 ARDLQGFLHDVPRLRTRTIGDNVVIEGEGLSDAERDKVTELAKRFPQLIDFTS------- 181
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+ + V E+ R L+ +G + G +
Sbjct: 182 ------RVGLDRMFAFDVRFVEISRSGLRDLGIDWTTQGKPLLGIGVIGDLYHDNRTGAT 235
Query: 243 GDFSVKGVLDR--------------------FSFETVLHALERATAIRTLAEPTLTAISG 282
++ SF L+ L + LA P L+A +
Sbjct: 236 VTRTLGSGELSSEVEIEANRVSPFAANVALVGSFFGRLNLLAQKGDAVILASPRLSARNR 295
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVI 341
ASF +GG+ V+S+TG SVT +YG+ L+ P + G I RI+TEVS
Sbjct: 296 GEASFLAGGEIPVP-VASATGTPSVTFKEYGIRLNILEPVADAAGTIRARIRTEVSSLDR 354
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
V A +P R+ +T L +G T+VL+G+L+ + Q + +P L ++P++G LFR++
Sbjct: 355 SVAAQGVPGLLSRRTETEFNLRNGETLVLSGVLQREQQSDENALPHLGELPVIGRLFRST 414
Query: 402 RFNREETEIFIAATPFLVKPVAM 424
RFN E+E+ + TP+L++P
Sbjct: 415 RFNSRESELVVFVTPWLLEPGEG 437
>gi|317403407|gb|EFV83920.1| hypothetical protein HMPREF0005_02046 [Achromobacter xylosoxidans
C54]
Length = 453
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 100/444 (22%), Positives = 166/444 (37%), Gaps = 35/444 (7%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ G+ + + + + +L V V + D + R + +F + G ++
Sbjct: 17 AARSAWPAGQTLEMQVGESRVLAESG-VTRVAIGDSQVLSAIATDSREVVVFARTEGVSS 75
Query: 99 VILIGHDGKQMLNLDILIE--RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
+ + G Q ++ + + L I + + V VV+ G + D
Sbjct: 76 IQVWADGGVQAYDVHVAAAGVTRLRAEVDALLARIPGARSSL--VGGRVVVEGDDLSDDD 133
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
R L+E + + + V L V + E+ R L++IG +
Sbjct: 134 HARIAALAEHYPEVMDFTG-------------RVGWDSMVQLDVQVVEMPRSRLREIGVR 180
Query: 217 H-SITGSSSGPSKSFAADFGG--------KFVSEGGDFSVKGVLD-RFSFETVLHALERA 266
+T ++ A G + SV G + AL ++
Sbjct: 181 WEGLTQGGVNAGLAWDAGSLGRMARPGEAVIDTPAPVSSVAGYFGVNALLSARIAALAQS 240
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
LA+P L A SG SA+F +GG+ Y + S T++ YGV L TP + G
Sbjct: 241 GEAVMLAQPQLLARSGASATFLAGGEVPYVSTDSRGNPTTL-FKPYGVSLRITPRIDRNG 299
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I I+ E S + + P+ R R+A T + SG T+V+ G L + G+P
Sbjct: 300 VIRSLIEVEASSVDMALTGASGPALRTRRASTEFNVRSGDTLVIGGFLSRERADDSSGLP 359
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
L IPILGALF + R+ ETE+ I TP +V D D F
Sbjct: 360 GLKDIPILGALFASRRYQLRETELAIFVTPRIVSRNEPAM----TDRVRRGRDVIRAAFP 415
Query: 447 RVNKIYGPKEASEVEGQNYKGAIG 470
+++ E + G N G G
Sbjct: 416 EPSRL--GTEVPVMAGWNIHGGKG 437
>gi|221066739|ref|ZP_03542844.1| type II and III secretion system protein [Comamonas testosteroni
KF-1]
gi|220711762|gb|EED67130.1| type II and III secretion system protein [Comamonas testosteroni
KF-1]
Length = 467
Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats.
Identities = 97/453 (21%), Positives = 161/453 (35%), Gaps = 72/453 (15%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINI----SDVEIGKGKKISIGLNKVIILQVPV 64
FT + + + + A + A A + G + + + +L +
Sbjct: 7 FTALGLASSAILSTFATSAMAQTAAADNVRAGVVSVATPTGAASPLPLTMGSQHVLLPAM 66
Query: 65 DVQDVLVSDPTKADVVVHSPR------TMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
+ + V DP DV V + L K G + + G + + +
Sbjct: 67 PLARLAVGDPNVLDVKVLRSTGNSSAPELLLTPKAPGSTTLSIWSTRG-LSQSWQVEVSS 125
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
L+ L A+EL+ L + +
Sbjct: 126 PSLLLKKNLDSV--------------------------HDHALELASLRLKAAKDTALLD 159
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-------- 230
S V + V + V + E ++ LK+ G GS++
Sbjct: 160 RSQISV-------RSNTVQVDVQVVEFKKTALKRAGINLFSGGSNNHGFSFGMYTPGASS 212
Query: 231 ----------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ + L LE R LA+
Sbjct: 213 SSGSGSSSGGSGDGGASGGSTALSSAMNLVLGFSKAFSGAGISAQLGFLEGNGLARVLAK 272
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
PTL A +GQSASF +GG+ S+S+ S+ ++GV L TPTVLS RI L++
Sbjct: 273 PTLVAHTGQSASFLAGGEIPIPVPSTSSNNISIRYKEFGVKLQLTPTVLSNERIALKVAP 332
Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
E S+ + + +P+ R+ADT VEL G + V+ GL+ +PLL
Sbjct: 333 EASDLDYTSGVTIAGVAVPAIATRRADTMVELADGESFVIGGLVSRSTSSSVNKVPLLGD 392
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
+PILG F+N ++++E E+ I TP LV+P+
Sbjct: 393 LPILGPFFKNLNYSQDEKELVIIVTPRLVQPLP 425
>gi|66047618|ref|YP_237459.1| type II and III secretion system protein [Pseudomonas syringae pv.
syringae B728a]
gi|63258325|gb|AAY39421.1| type II and III secretion system protein [Pseudomonas syringae pv.
syringae B728a]
Length = 416
Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 96/460 (20%), Positives = 166/460 (36%), Gaps = 81/460 (17%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L + + P A+ + ++ + + I ++ V + + V DP
Sbjct: 13 LLALVIATLCAPGAWAASGSCAGLAAMPAA----VEIDQGIQQEVRSAVPITRIAVGDPK 68
Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
ADV V+ L G G ++++ R+ +
Sbjct: 69 IADVHVNGTDGFLLTGVAQGTTSLMVW------------------TACASAPRQSM---- 106
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
V + G T ++ L Q
Sbjct: 107 ---------VFVRGRATTAMVESVTAPSADAQL------------------------PSQ 133
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGG 243
V + EV R LK+ GSS+ +
Sbjct: 134 VQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNS 193
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+F++ +++A+E + TLA P+L A++GQSASF +GG+ +
Sbjct: 194 NFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGN 253
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359
S+ ++GV L TPTV+ RI L++ EVSE I + +P+ +R+ DT+
Sbjct: 254 GISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTS 313
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ L G + V++GL+ + P L IPILGA FR+S+ R+E E+ + TP LV
Sbjct: 314 IALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLV 373
Query: 420 KPVAMRD--LSRPDD--HYSVEDDAKAFFF--NRVNKIYG 453
+P+A S P + + +F ++ G
Sbjct: 374 QPLAANARLPSLPGEALRTYDPSFPRLYFLENGDFDRRDG 413
>gi|331092898|ref|ZP_04586842.2| type II and III secretion system protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331021233|gb|EGI01290.1| type II and III secretion system protein [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 416
Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 100/453 (22%), Positives = 162/453 (35%), Gaps = 80/453 (17%)
Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
+A P A + N I I +Q PV + + V DP ADV V
Sbjct: 19 IALSAPSAWAASGSCNGLAAMPAA---IEIDQGIQQNVQSPVAITRIAVGDPKVADVHVS 75
Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
+ L G G ++++ +
Sbjct: 76 NSDGFLLTGVAQGTTSLMVWTACSSAPRQSMVF--------------------------- 108
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
VR + L+ + QV +
Sbjct: 109 --------VRGRASASMVETLAAPSTDANL--------------------PSQVQTDIRF 140
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGV 250
EV R LK+ GS++ + G +F++
Sbjct: 141 IEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWG 200
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+L+A+E + TLA P+L A++GQSASF +GG+ + S+
Sbjct: 201 GGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYK 260
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGG 366
++GV L TPTV+ RI L++ EVSE I ++ +P+ +R+ DT++ L G
Sbjct: 261 EFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITISGTTVPALNIRRTDTSIALADGE 320
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP--VAM 424
+ V++GL+ + P L IPILGA FR+S+ R+E E+ + TP LV+P V
Sbjct: 321 SFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAVDA 380
Query: 425 RDLSRPDDHYS--VEDDAKAFFF--NRVNKIYG 453
R S P + + +F ++ G
Sbjct: 381 RLPSLPGESLRNYDPSFPRLYFLENGDFDRRDG 413
>gi|113867004|ref|YP_725493.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16]
gi|113525780|emb|CAJ92125.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16]
Length = 478
Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats.
Identities = 95/453 (20%), Positives = 176/453 (38%), Gaps = 33/453 (7%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
P A S + I + +V L+VP ++ V + + V R
Sbjct: 22 PVTTAARTGAQPPSYELPARFGAIELFKGEVRALEVPGTIRRVAIGNGALVSSTVVDGR- 80
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTV 145
+ L + +G ++I+ G + + D A + LR + +++E+V +V
Sbjct: 81 LLLLAEEIGTTSLIVWNERGVALQGKLRVAPADTADVAQRLRASLGSVRGLKIEVVGPSV 140
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
VL G+V + V L +T S + + A + V KV I E+
Sbjct: 141 VLSGIVDP-----QMVPLIKTATSGLDSVVNLVRADEGD------ALKKTVHFKVHIMEI 189
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFA---------------ADFGGKFVSEGGDFSVKGV 250
R ++++G + + + + A F G S +
Sbjct: 190 TRRGMEKLGIAWQQSFNGPQIAFAGNPVHTGRYRTLPSTDAATFTDTPSQVAGAASGFYL 249
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ + ++ LA P L + SG A+F +GG+ + G T V
Sbjct: 250 GIATTIFSRINLAISDGDAYVLAAPELNSKSGGLATFLAGGEVPIPKA-GAFGTTDVDYK 308
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
YG+ L+ P V I ++TE+S+ V+ G P++ R+ + + +G T+ +
Sbjct: 309 PYGIKLNIRPAVNVDNVISTTLETEISQIDPSVSFGGFPAFLTRRTTSETSIRAGETLAI 368
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
+GL+ D + + +PLL IPILG LFR+ F ++++ I TP + P + + +
Sbjct: 369 SGLVNADASKAVDKVPLLGSIPILGRLFRSDEFRNNKSDLVIFVTPVVYDPASPENAAL- 427
Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
D A + +R + A+ V Q
Sbjct: 428 ---LQRGADVDANYRHRFGEPSPLPAANAVREQ 457
>gi|307730006|ref|YP_003907230.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
gi|307584541|gb|ADN57939.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
Length = 490
Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats.
Identities = 101/497 (20%), Positives = 180/497 (36%), Gaps = 67/497 (13%)
Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
+ + ++ + + G +++ + + L ++ V + DP+ ADV++
Sbjct: 1 MAALVCGSSMAASPAGFAAGGAQQLELLVGSQQSLASGHTLRRVAIGDPSVADVLIIKGD 60
Query: 86 T---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
+ L GK+ G NV+L L+ + + A + + V ++
Sbjct: 61 KTGGVLLVGKSPGSTNVMLWEQGKDAPLSYVVNVSSPAA------KSLLGPGTPSVRVLG 114
Query: 143 DTVVLHGMVRTIQDSQR-------------------------------AVELSETFLSQS 171
D+ ++ G T++ QR
Sbjct: 115 DSALISGSAPTMEAHQRAVAAAAIEARQRATLGTVANSAANSAAAGASVGRGGRGTAVSG 174
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA------------EVRRDILKQIGFQHSI 219
+ ++ + + G+ Q+ T+A E R +LKQ+G
Sbjct: 175 MSGAAGSDATNGGASFASAMGDAQIYDTSTVATRSVVQVDVRVVEFSRTVLKQVGLNILK 234
Query: 220 TGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETVLHALERATAI 269
+ + F++ L +E
Sbjct: 235 QNNGFTFGSFAPSALSSATYGPTPSFNSVAPISSAFNLVFNSATRGLFADLSLMESNNLA 294
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
R LAEPTL A+SGQSASF +GG+ + G TS+ YGV L TPTVLSP RI
Sbjct: 295 RILAEPTLVALSGQSASFLAGGEIPVP-IPQGLGTTSIEYKPYGVGLTLTPTVLSPQRIA 353
Query: 330 LRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
L++ E S+ + ++ +P+ R+ DTTVEL G + V+ GL+ + +
Sbjct: 354 LKVAPEASQLDFANAVTISGVSVPAITTRRTDTTVELGDGESFVIGGLIDRETISNVAKV 413
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
PLL +P++GA F+ + + + E+ I TP LV P+A E +
Sbjct: 414 PLLGDLPVIGAFFKQLNYQQNDKELVIIVTPHLVSPLAKGATLPATPGEQSEQRNAPVWR 473
Query: 446 NRVNKIYGPKEASEVEG 462
+ + + A
Sbjct: 474 SFLGGVAARDAAPGFSK 490
>gi|329912918|ref|ZP_08275837.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480]
gi|327545493|gb|EGF30693.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480]
Length = 608
Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats.
Identities = 95/435 (21%), Positives = 172/435 (39%), Gaps = 43/435 (9%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
P+V + A + +D + +I + + + + P V + V +
Sbjct: 88 LKPTVRRPQVASRPYAPISPQNDQGMIP--EIEMFVGESRVFPTPG-VARIAVGNGQIMS 144
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIR 137
+ + +F VG +++ + DG+ ++ D + + F+ S R
Sbjct: 145 AAALDEKEVIVFANGVGTSSLFVWNADGRYQRVKVSIVPGDTTRIARDVTAFLKSMSGTR 204
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQV 196
++ D V++ G + + + L + + +++N + E V
Sbjct: 205 TSIIGDKVIIEGDNLSDVELAKIDMLEKRY--------------PQIINFTNQLGWEPMV 250
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFVSEG 242
L V + E + L+ IG + G ++ + + + S
Sbjct: 251 MLDVKVVEFPTNELRDIGLKWGSVGGAAVGAIWSPGRRGTDGPYQVNIQSANAAPITSPE 310
Query: 243 GDFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
G S V + L+ L + LA+P L+A SG ASF +GG+
Sbjct: 311 GSGSPVRVPGGLNVLSALNLGLNAQLNLLAQQGKASLLAQPQLSARSGTKASFLAGGEFP 370
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
Y + + +V YG+ L P V G I I EVS+ V+ P+ + R
Sbjct: 371 YSVATING--VTVQFKPYGIKLDILPKVDRNGVIRATIDAEVSKIDASVSTVVGPALQTR 428
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
K T + +G TIVLAG+L+ D + +PLL +P+LGALFR+ RF +ETE+ +
Sbjct: 429 KTKTEFNVLAGDTIVLAGMLQADNSTSIDKVPLLGDVPVLGALFRSKRFENKETELVVFV 488
Query: 415 TPFLVKPVAMRDLSR 429
TP +V + + R
Sbjct: 489 TPTIVDSRSPALIER 503
>gi|319791194|ref|YP_004152834.1| type II and iii secretion system protein [Variovorax paradoxus EPS]
gi|315593657|gb|ADU34723.1| type II and III secretion system protein [Variovorax paradoxus EPS]
Length = 532
Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats.
Identities = 88/438 (20%), Positives = 163/438 (37%), Gaps = 34/438 (7%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+++ + ++ ++++P V V + + + V M + ++ G + + + +G
Sbjct: 96 LTLYVGQMALVKMPG-VSRVAIGNGKVMEARVLDGANMLITAQDAGDSTLHVWDKNGTVR 154
Query: 110 LNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
+ D+ + LR S + + + + +++ G +R +++ +
Sbjct: 155 KLKVRVNVADLERIADELREITRGISGVNIRRIGERIIMDGNSLDPAAVERLNTVAQLYA 214
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
A+ I + V ++V I E + L +G + +G
Sbjct: 215 PAVVSLATAD----------RIRVDRMVDIQVRIVEFSKTALDDLGVRWQSSGDGFNFGL 264
Query: 229 SFAADFGGK--FVSEGGDFSVKGVLD-----------------RFSFETVLHALERATAI 269
G + +G F+ S + ++ L +
Sbjct: 265 FSDIASSGSYRILPDGSAFNTSTPQGTALLGQNRRMPEAYFGIGLSLTSRINLLVQRGNA 324
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
LA P L+ SG A F +GG+ S+ GA SV YGV L+ P G +
Sbjct: 325 FLLASPNLSTRSGGEAKFLAGGEIPLP-ALSTQGAGSVEFKPYGVRLNIKPIADGEGNVS 383
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
I TEVS V +P +R+ DT + +G TIVL+GLL + + +G+P L
Sbjct: 384 GSILTEVSSIDRSVAVQGIPGLLIRRTDTEFNVKAGETIVLSGLLSRESTRSSDGVPGLR 443
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
K PI+G FR +E E+ + TP +V P R R + +E D + F
Sbjct: 444 KTPIIGRAFRADNDTDKEQEVVVFITPRVVGPADSR--PRIERARELERDVGSNFGTLTE 501
Query: 450 KIYGPKEASEVEGQNYKG 467
P + G
Sbjct: 502 DKSDPNGSRPPAAAADIG 519
>gi|330819176|ref|YP_004348038.1| type II and III secretion system protein [Burkholderia gladioli
BSR3]
gi|327371171|gb|AEA62526.1| type II and III secretion system protein [Burkholderia gladioli
BSR3]
Length = 564
Score = 216 bits (549), Expect = 9e-54, Method: Composition-based stats.
Identities = 90/445 (20%), Positives = 172/445 (38%), Gaps = 31/445 (6%)
Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
P A + + + + + ++ ++ VP ++ + + D + V
Sbjct: 26 PGAPPALAARQAEHEENATPAQHALLDLYRGEIRLIDVPGRIKRIAIGDGSLVTANVVDG 85
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSD 143
R + L + G +++ +G + + + ++ LR +A +++V
Sbjct: 86 R-LMLLAEKAGVTSLVAWTANGIALNTTVRVAKGNVRETAAQLREVLAIVPDVKVIESGP 144
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----AGEDQVTLK 199
++L G V GR + A + ++N + + A + + K
Sbjct: 145 NILLTGTV---------------HRDMLGRIKAATAGVPNLVNAIAVDEGDALKKTIHFK 189
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
V I E+ R+ + +G + + A + G G + G+ +
Sbjct: 190 VRIMELTRNAQENLGIEWDRKIAGPQAG---AQGYIGSQAVAGPGMVIAGI--STHIAST 244
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
L+ + LA P L SG +ASF +GGQ + G T V DYG+ L
Sbjct: 245 LNLMITRGDAYVLAAPELNTKSGGTASFLAGGQVPIPRA-GALGTTDVEYKDYGIKLDIK 303
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
P V + I +I TE+S+ V+ G P + R A + + L +G T+ ++GL+ D
Sbjct: 304 PVVDANNVISAQIDTEISQIDPSVSYGGYPGFLTRSARSDISLRAGETMAISGLVNADAI 363
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
+P L ++PI+G LFR+ F + +++ I TP + P L+ D + D
Sbjct: 364 GNMSRLPFLGRLPIIGRLFRSDEFRSKRSDLVIFVTPMISDPT----LAPNTDLLARADR 419
Query: 440 AKAFFFNRVNKIYGPKEASEVEGQN 464
F R E G++
Sbjct: 420 IDRGFHQRHGDPSPLAERDRARGKD 444
>gi|71735124|ref|YP_276550.1| type II/III secretion system protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555677|gb|AAZ34888.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 416
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 99/435 (22%), Positives = 158/435 (36%), Gaps = 75/435 (17%)
Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
++ A + I ++ PV + + V DP ADV V+ L
Sbjct: 24 QSAWAASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLT 83
Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G G ++++ R+ + V + G
Sbjct: 84 GVAQGTTSLMVW------------------TACATAPRQSM-------------VFVRGR 112
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
T ++ ++ QV + EV R L
Sbjct: 113 ATTSMV---------------ETVPAPSADAE---------LPSQVQTDIRFIEVSRTKL 148
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFET 258
KQ G GS++ + G F++
Sbjct: 149 KQAGTSIFGKGSNNFLFGAPGTVPGVTVTPGTVSGALPSIPLAESAFNIVWGGGSSKVLG 208
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
+L+ALE + TLA P+L A+SGQSASF +GG+ ++ S+ ++GV L
Sbjct: 209 ILNALENSGFAYTLARPSLVALSGQSASFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTL 268
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
TPTV+ RI L++ EVSE + +P R R+ DT++ L G + V++GL+
Sbjct: 269 TPTVVGRNRILLKVAPEVSELDFTSEISIAGTTVPIIRTRRTDTSIALADGESFVVSGLI 328
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDD 432
E P L IPILGA FR+S+ R+E E+ + TP LV+P+A S P +
Sbjct: 329 NTSNISTVEKFPGLGDIPILGAFFRSSKIQRDERELLMIVTPHLVQPLAANAQLPSLPGE 388
Query: 433 HYS--VEDDAKAFFF 445
+ +F
Sbjct: 389 GLRTYDPSFPRLYFL 403
>gi|238759122|ref|ZP_04620291.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236]
gi|238702670|gb|EEP95218.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236]
Length = 354
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 96/381 (25%), Positives = 167/381 (43%), Gaps = 37/381 (9%)
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+ + + M+ +L+ I + ++ DSNI + + D+ +L G + +
Sbjct: 1 MFNRNNQPMIKTVVLVNNIINLVYQRIKVEYPDSNIEINKIGDSYILTGQAESEEAKDTI 60
Query: 161 VELSETFLSQS-----GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
+ ++ N + ++N + + +QV +K+TIAEV +D + IG
Sbjct: 61 ASMVGEAVNNRREIKHKDQYLNNHNYLGIINKIKLPRPNQVNVKLTIAEVTKDFSENIGI 120
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
S G S G + + T++HA+ + R LAEP
Sbjct: 121 DWSSIGESVGSFQFL-------------------KFNASGISTLVHAINDDSIARILAEP 161
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
L+ +SG+SASF GG+ + +T + YG+ L + V +I +++ E
Sbjct: 162 NLSVLSGESASFLVGGEIPLYNT--TQNSTIIKYKPYGIKLSISAKVNEHSKIRIKVDEE 219
Query: 336 VSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
VS P+ RKA TT+EL G + +L GL+ ++ + IP + IP
Sbjct: 220 VSNIGKRFNVEGGNAYPTLETRKAATTLELADGESFILGGLITKSERESLKKIPFIGDIP 279
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF-FNRVNKI 451
ILGA FRN++ ++TE+ + AT LVKP+A ++ PD + + F F R+ ++
Sbjct: 280 ILGAFFRNAQTENKQTELVVVATVSLVKPLAGTEVELPD--FMNTSTLERLFNFTRIIEV 337
Query: 452 YGPKEASEVEGQNYKGAIGFI 472
K A E + GFI
Sbjct: 338 KRKKVAKEFLRKG-----GFI 353
>gi|114321311|ref|YP_742994.1| type II and III secretion system protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227705|gb|ABI57504.1| type II and III secretion system protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 428
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 96/414 (23%), Positives = 158/414 (38%), Gaps = 75/414 (18%)
Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
+ L P V V V DP AD+ + R + L G + G +V + +
Sbjct: 51 LDAGVHKRLTFPTRVTRVAVGDPDVADLEIIGDRELLLTGVDGGLTSVYVWTTCNDRPDR 110
Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
+++ ++V + + +L
Sbjct: 111 TLVIVSAR--------------EALQVHEAEGS------------RDQVADL-------- 136
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
QV + + EV R L+++G S+
Sbjct: 137 ---------------------PMQVQADIRLVEVSRSKLREMGGSILGRRGSANFLFGGP 175
Query: 232 ADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
G G F++ F ++++ALE TLAEP+L A
Sbjct: 176 GSVSGSVAPGGVGDANVGLPASDSGFNIFYGGGGSRFLSMINALEANDFAYTLAEPSLVA 235
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
+SGQSA+F +GG+ SS + ++ ++GV + FTPTV+ R+ L++ EVSE
Sbjct: 236 LSGQSATFHAGGEFPVPVPSSGSDTINIRFKEFGVRVSFTPTVIDGDRLTLKVAPEVSEL 295
Query: 340 VIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+P RVR+ DTTV L G + V++GL+ + + + P L IP+LG
Sbjct: 296 DDTSGIEIAGTRVPGLRVRRTDTTVTLGDGESFVISGLVSNHMASQVDKFPGLGNIPVLG 355
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSV--EDDAKAFFF 445
A FR+SR + E+ E+ + TP LV+P+A P + + FF
Sbjct: 356 AFFRSSRVSEEDRELLMIVTPHLVQPLARDAEQPPLPGEDLRDYRPSWTEQFFL 409
>gi|320322730|gb|EFW78823.1| type II/III secretion system protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330485|gb|EFW86464.1| type II/III secretion system protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 416
Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats.
Identities = 99/435 (22%), Positives = 158/435 (36%), Gaps = 75/435 (17%)
Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
++ A + I ++ PV + + V DP ADV V+ L
Sbjct: 24 QSAWAASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLT 83
Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G G ++++ R+ + V + G
Sbjct: 84 GVAQGTTSLMVW------------------TACATAPRQSM-------------VFVRGR 112
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
S ++ ++ QV + EV R L
Sbjct: 113 AT---------------ASMVETVPAPSADAE---------LPSQVQTDIRFIEVSRTKL 148
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFET 258
KQ G GS++ + G F++
Sbjct: 149 KQAGTSIFGKGSNNFLFGAPGTVPGVTVTPGTVSGALPSIPLAESAFNIVWGGGSSKVLG 208
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
+L+ALE + TLA P+L A+SGQSASF +GG+ ++ S+ ++GV L
Sbjct: 209 ILNALENSGFAYTLARPSLVALSGQSASFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTL 268
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
TPTV+ RI L++ EVSE + +P R R+ DT++ L G + V++GL+
Sbjct: 269 TPTVVGRNRILLKVAPEVSELDFTSEISIAGTTVPIIRTRRTDTSIALADGESFVVSGLI 328
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDD 432
E P L IPILGA FR+S+ R+E E+ + TP LV+P+A S P +
Sbjct: 329 NTSNISTVEKFPGLGDIPILGAFFRSSKIQRDERELLMIVTPHLVQPLAANAQLPSLPGE 388
Query: 433 HYS--VEDDAKAFFF 445
+ +F
Sbjct: 389 GLRTYDPSFPRLYFL 403
>gi|170696786|ref|ZP_02887895.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
gi|170138302|gb|EDT06521.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
Length = 479
Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats.
Identities = 109/478 (22%), Positives = 183/478 (38%), Gaps = 47/478 (9%)
Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
L + ++ ++ + G +++ I + L ++ V + DP+ ADV++
Sbjct: 9 GLTALLCGSSMAMSSASFAAGGAEQLDIAVGSQQSLAGGHTLRRVAIGDPSVADVLIIKG 68
Query: 85 RT---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
+ L GK+ G NV+L L+ + + A + + V+++
Sbjct: 69 DKTGGVLLIGKSPGTTNVMLWEQGKDAPLSYVVNVSSPAA------KSLLGPGTPSVKVL 122
Query: 142 SDTVVLHGMVRTIQDSQRA---------VELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
DT ++ G T++ RA + G A S + N +
Sbjct: 123 GDTALITGAAPTMEAHHRAAAAAEIEAHQRAALGGAGGIGTADGAKSGANGGPNGSANSA 182
Query: 193 ED--QVTLKVTIA------------EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ Q+ TIA E R +LKQ+G + +
Sbjct: 183 SNNAQIYDTSTIATRSVVQVDVRVVEFSRTVLKQVGLNILKQNNGFTFGSFAPSALTSAT 242
Query: 239 VSEGGDFSVKGVLDRF----------SFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
FS + L +E R LAEPTL A+SGQSASF
Sbjct: 243 YGPTPSFSSVAPISSAFNLVFNSATHGLFADLSLMESNNLARILAEPTLVALSGQSASFL 302
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344
+GG+ + G TS+ YGV L TPTVLSP RI L++ E S+ + ++
Sbjct: 303 AGGEIPVP-IPQGLGTTSIEYKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTIS 361
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+P+ R+ DTTVEL G + V+ GL+ + +PLL +P++GA F+ +
Sbjct: 362 GVSVPAITTRRTDTTVELGDGESFVIGGLIDRETISNVAKVPLLGDLPVIGAFFKQLNYQ 421
Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
+ + E+ I TP LV P+A E + + + + A
Sbjct: 422 QNDKELVIIVTPHLVSPLAKGATLPATPGEQSEQRNAPVWRSLIGGVAARDAAPGFSK 479
>gi|254523433|ref|ZP_05135488.1| type II and III secretion system protein:Transport-associated
[Stenotrophomonas sp. SKA14]
gi|219721024|gb|EED39549.1| type II and III secretion system protein:Transport-associated
[Stenotrophomonas sp. SKA14]
Length = 433
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 100/445 (22%), Positives = 180/445 (40%), Gaps = 41/445 (9%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTMYLFGKNV 94
++ ++ + + + +P D++ V ++DP AD+V+ R L GK
Sbjct: 2 LVLLAPATSVAADDLVLQAREQRPWSLPADLERVAIADPGVADIVMLRGQRQALLVGKAP 61
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
G ++L + + + ++ + T S + +L G ++
Sbjct: 62 GTTTLLLWHRKQAEPQRVQVRVQSAVQGAANT-----GTSGLLFTQQDQQGLLQGSTDSV 116
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+ + + L + G+ A++ S + + + + + LKQIG
Sbjct: 117 LAHMQEQQTAAMALGKEGQLADASTVSSGGVVQVEVKVVE----------FNKTALKQIG 166
Query: 215 FQHSITGSSSGPSKSFAAD-----------------FGGKFVSEGGDFSVKGVLDRFSFE 257
S + F + + +
Sbjct: 167 ISFQNRNGSFAYGIARPGGQLPGNTGILPGMKEGESGNESTSPISSAFRLVFGSTKGLWN 226
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
+ L+ R LAEPTL A+SGQSASF +GG+ G T++T +G+ L
Sbjct: 227 ADVDLLQSNGMARVLAEPTLVALSGQSASFLAGGELP-ILEPQGLGTTTITYKPFGIGLT 285
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
TPTVL+P RI L++ E S+ N +PS R+ADTTVEL G + V+ GL
Sbjct: 286 VTPTVLAPNRIALKVAPEASDLDYSNSIALNGVQIPSITTRRADTTVELGDGESFVIGGL 345
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDD 432
+ ++ IPLL +PI+G+ FRN + R++ E+ I TP LV+P+A +L P
Sbjct: 346 VSSNVVSSVNKIPLLGDLPIIGSFFRNFDYKRQDKELVIIVTPRLVQPLARNTELPLPGA 405
Query: 433 HYSVEDDAK--AFFFNRVNKIYGPK 455
+ + + ++ +++ P
Sbjct: 406 REAKPNLPEWGSWLLGPISQDPVPG 430
>gi|297568753|ref|YP_003690097.1| type II and III secretion system protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924668|gb|ADH85478.1| type II and III secretion system protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 406
Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats.
Identities = 90/441 (20%), Positives = 174/441 (39%), Gaps = 69/441 (15%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M L+R+ + + + ++ + + + ++
Sbjct: 1 MSILKRSVTHPLLLLTMCLAVLLPPGAVAAAPDSWRPD----------SLRLEAQSQHVI 50
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ V V+DP+ +V + S + + L G + L + + + +++
Sbjct: 51 SRDQPIIRVAVADPSIMEVEMISQQELLLTALAPGATQLRLWHQETEPEMLRVVVVP--- 107
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
D +I+V +R ++ S+RA+ S L + + ++
Sbjct: 108 -------AAPYQDYDIQVRA---------DIRVVEVSRRALRQSGVNLLKDSDSITVATT 151
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
+ V+ ++ + FV
Sbjct: 152 APGVLTGID-----------------------------------NQAAGLPLASDSGFVP 176
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
F++ + ++ LE TLAEP+LT +SG++ASF +GG+
Sbjct: 177 LAQAFNLVAGDAKQRLLGIISLLESNGFAYTLAEPSLTVMSGKTASFLAGGEVPIPVSHG 236
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKA 356
++G+ S+ D+GV L TPTVL P RI + + EVSE + +P +RVR+
Sbjct: 237 TSGSVSIEYRDFGVRLQLTPTVLDPRRITIEVSPEVSELDFSAAVSTAGVTVPGFRVRRT 296
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+TTV+L G + V++GL+ ++ E +P L +PILGA F+++R + E+ + TP
Sbjct: 297 ETTVQLADGESFVISGLISNENASTVEKVPFLGSLPILGAFFKSTRLQSNDKELIMVVTP 356
Query: 417 FLVKPVAMRD-LSRPDDHYSV 436
LV+P+ + P +HY
Sbjct: 357 HLVRPLERGAQVPLPGEHYRD 377
>gi|213968016|ref|ZP_03396162.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato T1]
gi|301383668|ref|ZP_07232086.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato Max13]
gi|302059963|ref|ZP_07251504.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato K40]
gi|302131629|ref|ZP_07257619.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|213927359|gb|EEB60908.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato T1]
Length = 419
Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats.
Identities = 91/426 (21%), Positives = 155/426 (36%), Gaps = 72/426 (16%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ I ++ V + + V DP ADV V+ L G G ++++
Sbjct: 37 AAMPAAMEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGNDGFLLTGVAQGTTSLMVWT 96
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ + ++V + + + +
Sbjct: 97 TCASAPRQSMVFVRGRATA---------------------SMVERANAPSAEAHEAQL-- 133
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
QV + EV R LK+ GS+
Sbjct: 134 -----------------------------PSQVQTDIRFVEVSRTRLKEASISIFGKGSN 164
Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
+ + G G+F++ +L+A+E + T
Sbjct: 165 NFLFGAPGTVPGVTVTPGTVSGTLPSIPLNNGNFNIVWGGGSSKVLGMLNAMENSGYAYT 224
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LA P+L A++GQSASF +GG+ + S+ ++GV L TPT++ RI L+
Sbjct: 225 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLK 284
Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ EVSE I + +P+ +R+ DT++ L G + V++GL+ + P
Sbjct: 285 VAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPG 344
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443
L IPILGA FR+S+ R E E+ + TP LV+P+A+ S P + +
Sbjct: 345 LGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLL 404
Query: 444 FFNRVN 449
F R N
Sbjct: 405 FMERGN 410
>gi|21673269|ref|NP_661334.1| type II secretion system protein [Chlorobium tepidum TLS]
gi|21646357|gb|AAM71676.1| type II secretion system protein [Chlorobium tepidum TLS]
Length = 445
Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats.
Identities = 116/446 (26%), Positives = 182/446 (40%), Gaps = 58/446 (13%)
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
S+ + + ++ V + V V DP AD ++ SP +YL GK G N+I+ G +G
Sbjct: 12 SVPEGESRVYRLAVPAKRVAVGDPAIADFIMISPSELYLSGKKTGATNLIVWGKNGNFTT 71
Query: 111 -----------------------------------------NLDILIERDIAHLEMTLRR 129
+ + E I ++ L
Sbjct: 72 APLVVSRNVKPIQDLLRAVLPKEHDIQLYSSGDALVLAGSVSNALAAETAIRLVKTFLGG 131
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
+ D + + G + S + + SG A+S +NLL
Sbjct: 132 TVPDVTPEATLTKKSEAATGT--SGGTSISGMTGVASAAGMSGAATVASSGIHGFINLLK 189
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
I QV L+V IAEV + ++ +GF + G + + FVS +
Sbjct: 190 IRDPQQVRLEVRIAEVSKSYMEALGFSW-----TQGVGSTAGSSLMTGFVSNATLNLLLK 244
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
+ A + I+ LAEPT+ A+SGQ F GG+ + GA
Sbjct: 245 NSG----NLKVEADSQKNWIKMLAEPTIVAMSGQEGYFLVGGKIYTP-TPTGNGAVDYQE 299
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSG 365
YGV L FTPTVL GRI L++ EVSEP + +P+++V A TTVE+ G
Sbjct: 300 RTYGVGLRFTPTVLDAGRISLKVAPEVSEPDSQFQSAGSLYNLPAFKVSAASTTVEMNEG 359
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+V+ GLLKD + + E +PLL ++P+LGALFR++ + E+ E+ + P LVK
Sbjct: 360 QNLVIGGLLKDKLTETIEAVPLLGQLPLLGALFRHTSMDSEKVEVIVIVRPTLVKASDTV 419
Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKI 451
P D + + F ++
Sbjct: 420 P-ELPTDRFVPPGPNRLFLEGKLQGS 444
>gi|330873641|gb|EGH07790.1| type II/III secretion system protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 416
Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats.
Identities = 94/462 (20%), Positives = 162/462 (35%), Gaps = 76/462 (16%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK-ISIGLNKVIILQVPVDVQ 67
+ S+ V + +A + S + + I ++ V +
Sbjct: 1 MSCCSVPAIKPGLLVLLFTALSAPSAWAASGSCAGLAAMPAAMEIDQGIQQNVRSSVAIT 60
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
+ V DP ADV V+ L G G ++++ + +
Sbjct: 61 RIAVGDPKIADVHVNGSDGFLLTGVAQGTTSLMVWTTCASAPRQSMVFVRGRATA----- 115
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
++V + +
Sbjct: 116 ----------------SMVERADAPSAEA------------------------------- 128
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----- 242
QV + EV R LK+ GS++ + G
Sbjct: 129 ---QLPSQVQTDIRFVEVSRTRLKEASISIFGKGSNNFLFGAPGTVPGVTVTPGTVSGTL 185
Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+F++ +L+A+E + TLA P+L A++GQSASF +GG+
Sbjct: 186 PSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPV 245
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSY 351
+ S+ ++GV L TPT++ RI L++ EVSE I + +P+
Sbjct: 246 PVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPAL 305
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+R+ DT++ L G + V++GL+ + P L IPILGA FR+S+ R E E+
Sbjct: 306 NIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELL 365
Query: 412 IAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFFNRVN 449
+ TP LV+P+A+ S P + + F R N
Sbjct: 366 MIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLLFMERGN 407
>gi|28871966|ref|NP_794585.1| type II/III secretion system protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28855219|gb|AAO58280.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|331014708|gb|EGH94764.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 419
Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats.
Identities = 91/426 (21%), Positives = 155/426 (36%), Gaps = 72/426 (16%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ I ++ V + + V DP ADV V+ L G G ++++
Sbjct: 37 AAMPAAMEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGSDGFLLTGVAQGTTSLMVWT 96
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ + ++V + + + +
Sbjct: 97 TCASAPRQSMVFVRGRATA---------------------SMVERANAPSAEAHEAQL-- 133
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
QV + EV R LK+ GS+
Sbjct: 134 -----------------------------PSQVQTDIRFVEVSRTRLKEASISIFGKGSN 164
Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
+ + G G+F++ +L+A+E + T
Sbjct: 165 NFLFGAPGTVPGVTVTPGTVSGTLPSIPLNNGNFNIVWGGGSSKVLGMLNAMENSGYAYT 224
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LA P+L A++GQSASF +GG+ + S+ ++GV L TPT++ RI L+
Sbjct: 225 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLK 284
Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ EVSE I + +P+ +R+ DT++ L G + V++GL+ + P
Sbjct: 285 VAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPG 344
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443
L IPILGA FR+S+ R E E+ + TP LV+P+A+ S P + +
Sbjct: 345 LGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLL 404
Query: 444 FFNRVN 449
F R N
Sbjct: 405 FMERGN 410
>gi|119773845|ref|YP_926585.1| putative type II and III secretion system outermembrane protein,
secretin [Shewanella amazonensis SB2B]
gi|119766345|gb|ABL98915.1| putative type II and III secretion system outermembrane protein,
secretin [Shewanella amazonensis SB2B]
Length = 423
Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats.
Identities = 90/420 (21%), Positives = 167/420 (39%), Gaps = 36/420 (8%)
Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
+ + + + V + ++ +V+ V+V + V + + L G++ G +++ L DG
Sbjct: 12 QPLKLYVGAVELYKI-ANVERVVVGNGGVLSAKVLDEKNVILIGESEGLSDIQLWQKDGT 70
Query: 108 QMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
++ + + T++R +A+ +I V +V+HG + ++ +
Sbjct: 71 VRKLSVVVTKENAQTTVGTMKRMLAEFPSIEVTESDGVIVIHGEA-DASQRETLEKVLDG 129
Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
+ +Y E V ++V I E + L IG Q S
Sbjct: 130 KDNILPLIKYVKYGKS---------IEPMVKMEVKIVEFNKSTLNNIGVQWENVMSGPAF 180
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDR-------------------FSFETVLHALERAT 267
+ A F + + + L
Sbjct: 181 GAAKAFTANPIFSVSSPGQYANSIGGAVSDAIGVLDTRGWSYFGIVTGIGSQIQLLAEKG 240
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
R LAEP LT SG++ASF +GG+ S G+ + +YG+ L+ P V +
Sbjct: 241 DARMLAEPNLTTRSGEAASFLAGGEIP-IRTVSGVGSVDIQYKEYGIRLNIEPVVDADNN 299
Query: 328 IGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I R+ EVS + G P + R+ ++ + + + T+V++GL+ ++ ++ P
Sbjct: 300 IVSRVMAEVSAVDPSIQLEGSAPGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFP 359
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA---MRDLSRPDDHYSVEDDAKAF 443
LL IPILG LF++ F E+TE+ I TP +V P + LSR + +AF
Sbjct: 360 LLGDIPILGELFKSRNFREEKTELVIFVTPTVVYPGEDSHEKSLSRARELVDDAAKLEAF 419
>gi|330959995|gb|EGH60255.1| type II and III secretion system protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 416
Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats.
Identities = 93/466 (19%), Positives = 161/466 (34%), Gaps = 86/466 (18%)
Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
+ I L + + P + A + + + I + PV + +
Sbjct: 12 RWLVILLTALSMDSVWAAPGSCSTLAAMPAA---------VEIDQGIQQNISSPVAITRI 62
Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
V DP ADV V L G G ++++ + +
Sbjct: 63 AVGDPKIADVHVSGNDGFLLTGVAQGTTSLMVWTACSSAPRQSMVFVRGRAT-------- 114
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
+ + + +V
Sbjct: 115 -----------------------------------ASMVETASAPSGDAQLPSQV----- 134
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------- 242
+ EV R LK+ GS++ + G
Sbjct: 135 -------QTDIRFVEVSRSKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTPGTVSATKPN 187
Query: 243 -----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+F++ +L+A+E + TLA P+L A++GQSASF +GG+
Sbjct: 188 IPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPV 247
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRV 353
+ S+ ++GV L TPTV+ RI L++ EVSE I + +P+ +
Sbjct: 248 PNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNI 307
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R+ DT++ L G + V++GL+ + P L IPILGA FR+S+ R+E E+ +
Sbjct: 308 RRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMI 367
Query: 414 ATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFF--NRVNKIYG 453
TP LV+P+A S P + + +F ++ G
Sbjct: 368 VTPHLVQPLAANAQLPSLPGEGLRNYDPSFPRLYFLESGDFDRRSG 413
>gi|330873797|gb|EGH07946.1| type II/III secretion system protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 384
Score = 213 bits (541), Expect = 8e-53, Method: Composition-based stats.
Identities = 98/421 (23%), Positives = 156/421 (37%), Gaps = 75/421 (17%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
+ + I ++ PV + + V DP ADV V+ L G G ++++
Sbjct: 8 QRLVEIDQGIQQEVRSPVAIPRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW---- 63
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
R+ + V + G
Sbjct: 64 --------------TACATAPRQSM-------------VFVRGRAT-------------- 82
Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
S ++ ++ QV + EV R LKQ G GS++
Sbjct: 83 -ASMVETVPAPSADAE---------LPSQVQTDIRFIEVSRTKLKQAGTSIFGKGSNNFL 132
Query: 227 SKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ G F++ +L+ALE + TLA
Sbjct: 133 FGAPGTVPGVTVTPGTVSGALPSIPLAESAFNIVWGGGSSKVLGILNALENSGFAYTLAR 192
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P+L A+SGQSASF +GG+ ++ S+ ++GV L TPTV+ RI L++
Sbjct: 193 PSLVALSGQSASFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTLTPTVVGRNRILLKVAP 252
Query: 335 EVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
EVSE + +P R R+ DT++ L G + V++GL+ E P L
Sbjct: 253 EVSELDFTSEISIAGTTVPIIRTRRTDTSIALADGESFVVSGLINTSNISTVEKFPGLGD 312
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFFN 446
IPILGA FR+S+ R+E E+ + TP LV+P+A S P + + +F
Sbjct: 313 IPILGAFFRSSKIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLYFLE 372
Query: 447 R 447
Sbjct: 373 N 373
>gi|264680618|ref|YP_003280528.1| type II and III secretion system protein [Comamonas testosteroni
CNB-2]
gi|262211134|gb|ACY35232.1| type II and III secretion system protein [Comamonas testosteroni
CNB-2]
Length = 454
Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats.
Identities = 109/432 (25%), Positives = 171/432 (39%), Gaps = 35/432 (8%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
RTF L + SV P + + + ++I + + L +P
Sbjct: 10 SRTFSLKPLYLLCGLSLSVVTAPVLAQQVPNTGESRAQQATAAREIKLVMGAQHELNLPG 69
Query: 65 DVQDVLVSDPTKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V+ + + D T A V + + L G + ++ Q + +++
Sbjct: 70 GVERIAIGDDTIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQR 129
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYA 177
+ LR A S I + G + Q + +A V+LS L +
Sbjct: 130 VE-----LRTAKASSLIEQQFA-------GELANAQSADKAKTVDLSSVQLKSNVVQVDV 177
Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
+ + + GF I G S ++ G
Sbjct: 178 KVVEFNKTQMKKVG-----------LNLFSTAPNSSGFSFGIFGRGSYGISGGSSTTGAA 226
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
F++ D+ + LE R LA PTL A+SGQSA+F SGG+
Sbjct: 227 ANPLTQAFNLLMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP- 285
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRV 353
V + TG ++ YG+ L +PTVLS RI L++ E SE N+ +PS
Sbjct: 286 VPAGTGMVAIQYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITT 345
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R+ADTTVEL G + V+ GL+ + + +PLL IPILG LF+ F ++E+E+ I
Sbjct: 346 RRADTTVELGDGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIV 405
Query: 414 ATPFLVKPVAMR 425
TP LVKP+A
Sbjct: 406 VTPRLVKPLARD 417
>gi|221070074|ref|ZP_03546179.1| type II and III secretion system protein [Comamonas testosteroni
KF-1]
gi|220715097|gb|EED70465.1| type II and III secretion system protein [Comamonas testosteroni
KF-1]
Length = 454
Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats.
Identities = 105/422 (24%), Positives = 168/422 (39%), Gaps = 35/422 (8%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L + S +P + + + ++I + + L +P V+ + + D
Sbjct: 20 LLCGLSLSAVTVPALAQQLPNAGESRAQQATAAREIKLVMGAQHELNLPGGVERIAIGDD 79
Query: 75 TKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
A V + + L G + ++ Q + +++ + LR
Sbjct: 80 AIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQRVE-----LRT 134
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNL 187
A S I + G + Q + +A V+LS L + +
Sbjct: 135 AKASSLIEQQFA-------GELANAQSADKAKTVDLSSVQLKSNVVQVDVKVVEFNKTQM 187
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
+ + GF I G S S ++ G F++
Sbjct: 188 KKVG-----------LNLFSTSPNGSGFSFGIFGRGSYGSSGGSSTTGATANPLTQAFNL 236
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
D+ + LE R LA PTL A+SGQSA+F SGG+ V + TG ++
Sbjct: 237 LMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP-VPAGTGLVAI 295
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELP 363
YG+ L +PTVLS RI L++ E SE N+ +PS R+ADTTVEL
Sbjct: 296 QYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATIPSITTRRADTTVELG 355
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
G + V+ GL+ + + +PLL IPILG LF+ F ++E+E+ I TP LVKP+A
Sbjct: 356 DGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIVVTPRLVKPLA 415
Query: 424 MR 425
Sbjct: 416 RD 417
>gi|163856388|ref|YP_001630686.1| putative outer membrane protein [Bordetella petrii DSM 12804]
gi|163260116|emb|CAP42417.1| putative outer membrane protein [Bordetella petrii]
Length = 458
Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats.
Identities = 96/380 (25%), Positives = 160/380 (42%), Gaps = 25/380 (6%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+++ + + +L+ +V V V + V R + LF + G ++V + G
Sbjct: 30 LTLEVGQTRVLR-HAEVTRVAVGNGQVVSAVSVDGREVVLFARQEGASSVHVWAPRGVAA 88
Query: 110 LNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
+ A ++ ++ + N+R +V VVL G D R L++ +
Sbjct: 89 AYEVQVRPAGWALIQEEVQTLLRHIPNVRSSVVGGNVVLEGDDLADDDRARVAALAQRYP 148
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSG 225
+ ++ V L V + E+ L++ G Q S G +G
Sbjct: 149 RILDFTG-------------QVGWDNMVLLDVQVVEIPSARLREFGLQWDALSQGGLHAG 195
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET------VLHALERATAIRTLAEPTLTA 279
+ ++ S++G+ F L AL + LA+P L A
Sbjct: 196 GVWQPGSSLQLADAAQPPALSMQGMGAAGYFGVNALLSARLAALAQRGEAVMLAQPQLLA 255
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
SG +ASF +GG+ Y T + G +S YGV L+ TP + G I RI+ E S
Sbjct: 256 RSGTTASFLAGGEVPYSTT-DAQGNSSTEFKPYGVSLNITPRIDRNGAIRSRIEVEASSI 314
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
++ P+ R R+A T + SG T+VL G L + + G+P+L IP+LGALF
Sbjct: 315 DTSLSVAGGPALRTRRAVTEFNVRSGQTLVLGGFLSRERSHERSGLPVLQDIPLLGALFS 374
Query: 400 NSRFNREETEIFIAATPFLV 419
+ R +ETE+ I TP +V
Sbjct: 375 SRRDQHKETELAIFVTPRIV 394
>gi|302185189|ref|ZP_07261862.1| type II and III secretion system protein [Pseudomonas syringae pv.
syringae 642]
Length = 416
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 92/422 (21%), Positives = 154/422 (36%), Gaps = 75/422 (17%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ I ++ V + + V DP ADV V+ L G G ++++
Sbjct: 37 AAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW- 95
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
R+ + V + G T
Sbjct: 96 -----------------TACASAPRQSM-------------VFVRGRATTAMVESVTAPS 125
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
++ L QV + EV R LK+ GS+
Sbjct: 126 ADAQL------------------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSN 161
Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
+ + G +F++ +++A+E + T
Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAYT 221
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LA P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L+
Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281
Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ EVSE I + +P+ +R+ DT++ L G + V++GL+ + P
Sbjct: 282 VAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPG 341
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDD--HYSVEDDAKAF 443
L IPILGA FR+S+ R+E E+ + TP LV+P+A S P + + +
Sbjct: 342 LGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEALRTYDPSFPRLY 401
Query: 444 FF 445
F
Sbjct: 402 FL 403
>gi|118581113|ref|YP_902363.1| type II and III secretion system protein [Pelobacter propionicus
DSM 2379]
gi|118503823|gb|ABL00306.1| type II and III secretion system protein [Pelobacter propionicus
DSM 2379]
Length = 386
Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats.
Identities = 91/397 (22%), Positives = 154/397 (38%), Gaps = 54/397 (13%)
Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
+ +NK +++ + + V +++P AD+++ +PR + L G +G ++I+ G++ L
Sbjct: 33 QVIVNKSVLVNLKNPAERVSIANPAIADLLLITPRQIQLNGLALGATSLIVWEKGGEKPL 92
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
D+ + + + V + + + L
Sbjct: 93 FFDVNVVGNTN-----------------------IDDSQQVLLQVKVAQIDKTALKNLGV 129
Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
S + N++ IG + + S+SG
Sbjct: 130 SFLVKNQNANG---------------------------FSNMIGAPSTSSTSASGDGTIS 162
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
A+ S +++ V+ AL + LAEP L SGQ F +G
Sbjct: 163 TANGIIDGFSSLNPYTMGITHFPSGVSAVIKALATKGMAKILAEPNLVVKSGQKGEFFAG 222
Query: 291 GQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGD 347
+ + + ST S+ + GV L+F P V+ G I L + EVS +
Sbjct: 223 SRIPFSVLENTGSTSTPSIRWEEVGVKLNFKPFVMESGTIALELDPVEVSNIQGTLETNG 282
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P R T+ EL G ++VLAGLL+D+ + +PLL IPILGALFR + ++E
Sbjct: 283 YPVIDTRTIKTSAELRDGESLVLAGLLRDETYKSISKVPLLGDIPILGALFRTTENEQKE 342
Query: 408 TEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAF 443
TE+ TP LV P + P D + K F
Sbjct: 343 TELVFFITPKLVMPEVPGVKVELPTDKQLTPEQEKEF 379
>gi|330963438|gb|EGH63698.1| type II/III secretion system protein [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 416
Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats.
Identities = 93/460 (20%), Positives = 161/460 (35%), Gaps = 76/460 (16%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK-ISIGLNKVIILQVPVDVQ 67
+ S+ V + +A + S + + I ++ V +
Sbjct: 1 MSCCSVPAIKPGLLVLLFTALSAPSAWAASGSCAGLAAMPAAMEIDQGIQQNVRSSVAIT 60
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
+ V DP ADV V+ L G G ++++ + +
Sbjct: 61 RIAVGDPKIADVHVNGIDGFLLTGVAQGTTSLMVWTTCASAPRQSMVFVRGRATA----- 115
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
++V + +
Sbjct: 116 ----------------SMVERADAPSAEA------------------------------- 128
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----- 242
QV + EV R LK+ GS++ + G
Sbjct: 129 ---QLPSQVQTDIRFVEVSRTRLKEASISIFGKGSNNFLFGAPGTVPGVTVTPGTVSGTL 185
Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+F++ +L+A+E + TLA P+L A++GQSASF +GG+
Sbjct: 186 PSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPV 245
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSY 351
+ S+ ++GV L TPT++ RI L++ EVSE I + +P+
Sbjct: 246 PVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPAL 305
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+R+ DT++ L G + V++GL+ + P L IPILGA FR+S+ R E E+
Sbjct: 306 NIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELL 365
Query: 412 IAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFFNR 447
+ TP LV+P+A+ S P + + F R
Sbjct: 366 MIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLLFMER 405
>gi|289625312|ref|ZP_06458266.1| type II and III secretion system protein [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647837|ref|ZP_06479180.1| type II and III secretion system protein [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330867146|gb|EGH01855.1| type II and III secretion system protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330871034|gb|EGH05743.1| type II and III secretion system protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 416
Score = 210 bits (535), Expect = 4e-52, Method: Composition-based stats.
Identities = 94/432 (21%), Positives = 157/432 (36%), Gaps = 77/432 (17%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ I ++ PV + + V DP ADV V+ L G G ++++
Sbjct: 37 AAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW- 95
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
R+ + V + G + +
Sbjct: 96 -----------------TSCATAPRQSM-------------VFVRGRAT----ASMIESV 121
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ QV + EV R LK+ GS+
Sbjct: 122 TAPSADAEL--------------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSN 161
Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
+ + G +F++ +L+A+E + T
Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYT 221
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LA P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L+
Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281
Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ EVSE I + ++P+ +R+ DT++ L G + V++GL+ P
Sbjct: 282 VAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPG 341
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443
L IPILGA FRNS+ R+E E+ + TP LV+P+A S P + + +
Sbjct: 342 LGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLY 401
Query: 444 FF--NRVNKIYG 453
F ++ G
Sbjct: 402 FLENGDFDRRDG 413
>gi|319795562|ref|YP_004157202.1| type II and iii secretion system protein [Variovorax paradoxus EPS]
gi|315598025|gb|ADU39091.1| type II and III secretion system protein [Variovorax paradoxus EPS]
Length = 533
Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats.
Identities = 81/423 (19%), Positives = 162/423 (38%), Gaps = 33/423 (7%)
Query: 21 PSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
P+ + EA I + + +++ + +++++++P V V + + +
Sbjct: 67 PTTPPPQAVDEAELQRIAARATVMQRLPDSLTLYVGQMVLVKMPG-VARVAIGNGKVMEA 125
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRV 138
V M + ++ G + + + G + D+ + LR S + +
Sbjct: 126 RVLDGANMLITAQDGGDSTLHVWDKSGGIRKVKVRVNVVDLDRIAGELREITRGISGVNI 185
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
V + +++ G +R +++ + A+ I + V +
Sbjct: 186 RRVGERIIMDGNSLDPAAVERLNTVAQLYAPAVVSLATAD----------RIRVDRMVDI 235
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSS-------------------GPSKSFAADFGGKFV 239
+V I E ++ L +G + +G G + + + G +
Sbjct: 236 QVRIVEFSKNALDDLGVRWQTSGDGFNFGLFSDIASSGSYRVLPDGSAFNTSTPQGTALL 295
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
S+ + + + ++ + LA P L+ SG A + +GG+
Sbjct: 296 SQNRRTPQAYLGIGLTLGSQINLQVQRGNAFLLASPNLSTRSGGEAKYLAGGEIPLP-AL 354
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
S+ GA SV YGV L+ P G I I TEVS V +P +R+ DT
Sbjct: 355 STQGAGSVEFKPYGVRLNIKPIADGEGNISGSILTEVSSIDPSVAVQGIPGLLIRRTDTE 414
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G TIVL+GLL + + +G+P L P++G FR + +E E+ + TP +V
Sbjct: 415 FNVKTGETIVLSGLLSRESSRASDGLPGLRNTPVIGRAFRADKDIDKEQEVVVFITPRVV 474
Query: 420 KPV 422
Sbjct: 475 DAA 477
>gi|104779900|ref|YP_606398.1| type II/IV secretion system protein D [Pseudomonas entomophila L48]
gi|95108887|emb|CAK13583.1| Putative type II/IV secretion system protein D [Pseudomonas
entomophila L48]
Length = 426
Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats.
Identities = 102/471 (21%), Positives = 173/471 (36%), Gaps = 97/471 (20%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
+ + + L P A + + I + L++PV +
Sbjct: 10 WLCLVVPLMLLMPQALATGKGCAAFDQMPTV----------IEMDQGLQQELRLPVAITR 59
Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
V V +P ADV R + L G G +++L
Sbjct: 60 VAVGEPKVADVQASGERAVLLTGVGQGNTSLMLW------------------TDCAPKPH 101
Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
R + V + G + ++ A++ +E
Sbjct: 102 RAM-------------VFIKGRA-SADMAEVALQATEQA--------------------- 126
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------------ 236
QV + EVRR K+ G + GS++ S
Sbjct: 127 --PLPTQVQADIRFVEVRRLKYKEAGAKLFFKGSNNSLFGSPGTVPNTVVRPGYVPGIQT 184
Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ F++ F +++ALE + TLA P+LT +SG +
Sbjct: 185 GTNPVTYADVRPGIPLDNDVFNIVWGGGSSRFLAMINALENSGFAYTLARPSLTVLSGLT 244
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---- 340
ASF +GG+ SS + S+ ++GV L TPTV+S RI L++ EVSE
Sbjct: 245 ASFLAGGEIPIPVPSSGSDNVSIEYKEFGVRLALTPTVVSGNRINLKVAPEVSELDYNNA 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ + +P VR+ DT++ L G + +++GL+ +++ + +P L +PI+GA FR
Sbjct: 305 VVIAGTRVPGLSVRRTDTSITLADGESFIISGLITSNVRSGVDKMPGLGNLPIIGAFFRQ 364
Query: 401 SRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFNR 447
+ NREETE+ + TP LV+P+A+ P + FF
Sbjct: 365 TALNREETELLMIVTPHLVQPLAVNAKLPELPGEGLRTYDPSWGHLFFMEN 415
>gi|330887974|gb|EGH20635.1| type II and III secretion system protein [Pseudomonas syringae pv.
mori str. 301020]
Length = 416
Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats.
Identities = 93/432 (21%), Positives = 156/432 (36%), Gaps = 77/432 (17%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ I ++ PV + + V DP ADV V+ G G ++++
Sbjct: 37 AAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLFTGVAQGTTSLMVW- 95
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
R+ + V + G + +
Sbjct: 96 -----------------TACATAPRQSM-------------VFVRGRAT----ASMIESV 121
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ QV + EV R LK+ GS+
Sbjct: 122 TAPSADAEL--------------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSN 161
Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
+ + G +F++ +L+A+E + T
Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYT 221
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LA P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L+
Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281
Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ EVSE I + ++P+ +R+ DT++ L G + V++GL+ P
Sbjct: 282 VAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPG 341
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443
L IPILGA FRNS+ R+E E+ + TP LV+P+A S P + + +
Sbjct: 342 LGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLY 401
Query: 444 FF--NRVNKIYG 453
F ++ G
Sbjct: 402 FLENGDFDRRDG 413
>gi|254515204|ref|ZP_05127265.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
gi|219677447|gb|EED33812.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
Length = 682
Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats.
Identities = 86/486 (17%), Positives = 166/486 (34%), Gaps = 72/486 (14%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
L+ + L P A + +NA +I+ S I + + I +++ + +
Sbjct: 137 RLENISAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDSAANISRIRDIIERMDQSAVQET 196
Query: 63 PVDVQDVLVSDPTKADVVVHSPRT---------MYLFGKNVGQANVILIGHDGKQMLNLD 113
V V++ + + + L ++++ G + ++
Sbjct: 197 DVIAMRYAVAEDVVRMLETLNATEAKNNGGEVDVLLVPDK-RTNSLLVSGDELQRARIRK 255
Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
++ D + + I + +++ VL +++ I + +
Sbjct: 256 LVAYVDTPLEQTGNVKVIYLEYAQATAIAE--VLTRVMQNINKLDTGDGKAARSSGNTAT 313
Query: 174 NQYANS--------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217
+ + + V+ L+I QV ++ I E+ + +G Q
Sbjct: 314 IEADEGTNSLIITADPDEMAAVESVITRLDIR-RAQVLVEAIIVELEVTDGQDLGLQWLF 372
Query: 218 ----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----------------- 256
GSS S + A + G + GD F
Sbjct: 373 ANDNGFYGSSINASDARARNIAGAILPPDGDGGSGATTGDFDVGNLAAALAGSAGLSLGW 432
Query: 257 ---------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----- 302
+L+ALE + L+ P+L + + A T G Q + T S +
Sbjct: 433 GVVGEDLSMTVILNALEEQSNANILSTPSLLTLDNEEAFITVGQQVPFITGSFTNTGGNN 492
Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVR 354
++ + G+ L TP V + L I+ EV+ A R
Sbjct: 493 GAQNPFQTIERENVGITLTVTPQVNEGDSVVLEIEQEVNSLTGATLVASAAAADLITNER 552
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
K T V G +VL GL+KDD+Q ++ +P+L IP LG LFRN + +T + I
Sbjct: 553 KIRTKVLAEDGRIVVLGGLIKDDVQSTEQRVPILGDIPFLGRLFRNDAVSVSKTNLMIFI 612
Query: 415 TPFLVK 420
P +++
Sbjct: 613 RPTIIR 618
>gi|88704137|ref|ZP_01101852.1| General secretion pathway protein D [Congregibacter litoralis KT71]
gi|88701964|gb|EAQ99068.1| General secretion pathway protein D [Congregibacter litoralis KT71]
Length = 696
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 89/486 (18%), Positives = 166/486 (34%), Gaps = 72/486 (14%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
L+ + L P A + +NA +I+ S I + + I +++ + +
Sbjct: 151 RLENISAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDSASNISRIQDIIERMDQSAVQET 210
Query: 63 PVDVQDVLVSDPTKADVVVHSPRT---------MYLFGKNVGQANVILIGHDGKQMLNLD 113
V V++ + + + L +V++ G + ++
Sbjct: 211 DVIALRYAVAEDVVRMLEKLNASEAKNNGGEVDVLLVPDK-RTNSVLVTGDELQRARIRS 269
Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
++ D + + I + +++ VL +++ I + S +
Sbjct: 270 LVAYVDTPLEQTGNVKVIYLEYAQATAIAE--VLTRVMQNINKLDTGDAKAARASSNTAT 327
Query: 174 NQYANS--------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217
+ + + V+ L+I QV ++ I E+ + +G Q
Sbjct: 328 IEADEGTNSLIITADADEMAALESVITRLDIR-RAQVLVEAIIVELEVTDGQDLGLQWLF 386
Query: 218 ----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----------------- 256
GSS S S A + G + D F
Sbjct: 387 ANDSGFYGSSINASDSRARNIAGAILPPDSDGGTGSTTGDFDVGNLAAALAGSAGLSLGW 446
Query: 257 ---------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----- 302
+L+ALE + L+ P+L + Q A T G Q + T S +
Sbjct: 447 GVVGEDLSMTVILNALEEQSNANILSTPSLLTLDNQEAFITVGQQVPFITGSFTNTGGNN 506
Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVR 354
++ + G+ L TP V + L I+ EV+ A R
Sbjct: 507 GAQNPFQTIERENVGITLTVTPQVNEGDSVVLEIEQEVNSLTGATLVASAAAADLITNER 566
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
K T V G +VL GL+KDD+Q ++ +P+L IP LG LFRN + +T + I
Sbjct: 567 KIRTKVLAEDGRVVVLGGLIKDDVQSTEQRVPILGDIPYLGRLFRNDAVSVSKTNLMIFI 626
Query: 415 TPFLVK 420
P +++
Sbjct: 627 RPTIIR 632
>gi|119477881|ref|ZP_01618004.1| general secretion pathway protein D [marine gamma proteobacterium
HTCC2143]
gi|119449042|gb|EAW30283.1| general secretion pathway protein D [marine gamma proteobacterium
HTCC2143]
Length = 689
Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats.
Identities = 84/463 (18%), Positives = 171/463 (36%), Gaps = 58/463 (12%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L P + +NA +I+ + I + +++ ++ + + + + ++
Sbjct: 162 VLRPLVPQQGHMAAYGPSNAIIISDTMANINRIRQVIESIDLSAVEKTEIIPLEYASAEE 221
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
+ +V + ++ ++ D L + + L L +A S
Sbjct: 222 IVRMLQQLQKTESAKGQADVKKLTLVADKRTNSILVAGDELERQRLESLITHLDTPLAQS 281
Query: 135 -NIRV------EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182
N++V + +VVL + + ++ E + + + ++
Sbjct: 282 GNVKVIYLKYADATELSVVLSKVAQNMERMSENNEKTRLAGKSEATIEADDGTNSLIVTA 341
Query: 183 ---------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
V+ L+I QV ++V I E+ + + +G + S G S +
Sbjct: 342 EADTMQLLLAVVAKLDIR-RAQVQVEVIIVEMTDNDGRDLGVEWLFINDSGGYGASNNSG 400
Query: 234 FGGKFV-------------------------SEGGDFSVKGVLDRFSFETVLHALERATA 268
G + G + + D SF V++AL++ +
Sbjct: 401 LGSTIAGAAFETNNNGSSVDARGGIAEAIGGAAGQVLGIGRLDDDLSFNVVVNALQQNSE 460
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHF 318
L+ P+L + + ASF G + T S + +V + G+ L
Sbjct: 461 ANILSTPSLLTLDNEEASFVVGQSIPFVTGSYTATGSSSSNPDNPFQTVERENVGITLRV 520
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
TP + + L I EVS + P RK +TT+ +G TIVL GL++D+
Sbjct: 521 TPQINEGDSLILAISQEVSNVIGTSTILNSNPITSERKIETTILADNGQTIVLGGLIEDN 580
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
I + + +P+L IP LG LFR++ + + + I P +V+
Sbjct: 581 ITESIQKVPILGDIPFLGRLFRSTSTSVGKKNLLIFLRPTIVR 623
>gi|330811024|ref|YP_004355486.1| type II secretion system protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379132|gb|AEA70482.1| putative type II secretion system protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 407
Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 91/410 (22%), Positives = 150/410 (36%), Gaps = 70/410 (17%)
Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
+G L++ V + V DP ADV L G G ++++ K
Sbjct: 42 TFEVGQGLQSELRILAPVTKLAVGDPKIADVQPSGNDAFILTGLAPGATSLMVWTDCSKI 101
Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
+ ++ L G + +
Sbjct: 102 PRQSMVFVKGRATEA-----------------------LTGAASIPSEDPMLLA------ 132
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ-----IGFQHSITGSS 223
QV + EV R LK+ G + + S
Sbjct: 133 --------------------------QVQTDIRFVEVSRTKLKEASTSIFGTRGNFLFGS 166
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ F++ + +++ALE + TLA P+L A+SGQ
Sbjct: 167 PRTLPTVGGIVRPSLPVNNDMFNLSFATGKTLL--MINALEGSGFAYTLARPSLVALSGQ 224
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342
SASF +GG+ S+ + S+ ++G+ L TPTV+ RI L++ EVSE
Sbjct: 225 SASFLAGGEVPIPVPSAGSDNVSIEYKEFGIRLTLTPTVIGKNRIALKVAPEVSELDFTN 284
Query: 343 ---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ +P+ VR+ DT++ L G + V++GL+ P L IPILGA FR
Sbjct: 285 AVNIAGTLVPALTVRRTDTSIALADGESFVISGLISTRNSSQVNKFPGLGDIPILGAFFR 344
Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFF 445
++ NREE E+ + TP LV+P+A + P + + + +F
Sbjct: 345 DNSINREERELLMIVTPHLVQPLAADAQLPTLPGEQLRNYDPNFYRMYFL 394
>gi|238796996|ref|ZP_04640500.1| Type II/III secretion system protein [Yersinia mollaretii ATCC
43969]
gi|238719256|gb|EEQ11068.1| Type II/III secretion system protein [Yersinia mollaretii ATCC
43969]
Length = 340
Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats.
Identities = 90/339 (26%), Positives = 156/339 (46%), Gaps = 31/339 (9%)
Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
++ I + DS+I ++ + D+ +L G V + ++ L +
Sbjct: 1 MVNDIINATNKRIIAEYPDSHIEIDKIGDSYILTGEVESEEEKDTIATLVGEAIGSKKEE 60
Query: 175 QY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
++N + + +QV +K+TIAEV +D + +G S G + G +
Sbjct: 61 SGKGQYFNTPYYSNIINKIKLPQSNQVNVKLTIAEVTKDFSENVGVDWSTAGDAVGSFQF 120
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ T++HA+ + R LAEP L+ +SG+SASF
Sbjct: 121 I-------------------RFNAKGISTLVHAINDDSIARILAEPNLSVLSGESASFLV 161
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AG 346
GG+ + + + +V+ ++G+ L+ V RI + I EVS N
Sbjct: 162 GGEIPIIST--TENSRTVSYKEFGIKLNIGAKVNEKKRIRIHINEEVSSIGKTFNIEGGD 219
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+PS R RKA+TT+EL G + +L GL+ ++ + IPL+ IPILGALFRN++ +
Sbjct: 220 SIPSLRTRKAETTLELGDGESFILGGLISHTERESLKKIPLIGDIPILGALFRNAQTEQN 279
Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
+TE+ + AT LVK V+ +++ PD + + FF
Sbjct: 280 QTELVVIATVNLVKSVSKKEVELPD--FMHTSTLERFFN 316
>gi|257483347|ref|ZP_05637388.1| type II and III secretion system protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331012566|gb|EGH92622.1| type II and III secretion system protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 416
Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats.
Identities = 92/432 (21%), Positives = 155/432 (35%), Gaps = 77/432 (17%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ I ++ PV + + V DP ADV V+ L G G ++++
Sbjct: 37 AAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW- 95
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
R+ + V + G
Sbjct: 96 -----------------TACATAPRQSM-------------VFVRGRAT----------- 114
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ + +V + EV R LK+ GS+
Sbjct: 115 -ASMIESVTAPSADAELPSQV------------QTDIRFIEVSRTKLKEASTSIFGKGSN 161
Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
+ + G +F++ +L+A+E +
Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYI 221
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LA P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L+
Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281
Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ EVSE I + ++P+ +R+ DT++ L G + V++GL+ P
Sbjct: 282 VAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPG 341
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443
L IPILGA FRNS+ R+E E+ + TP LV+P+A S P + + +
Sbjct: 342 LGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLY 401
Query: 444 FF--NRVNKIYG 453
F ++ G
Sbjct: 402 FLENGDFDRRDG 413
>gi|311105392|ref|YP_003978245.1| type II and III secretion system family protein 1 [Achromobacter
xylosoxidans A8]
gi|310760081|gb|ADP15530.1| bacterial type II and III secretion system family protein 1
[Achromobacter xylosoxidans A8]
Length = 456
Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats.
Identities = 87/475 (18%), Positives = 167/475 (35%), Gaps = 57/475 (12%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
++R ++ + L +P+ ++I + + + IL P
Sbjct: 1 MRRAVASIFAWALCLVSPAAWP--------------------ADEEIELQVGETRILSHP 40
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
V+ V + + + R + +F + G +++ + + + ++ L
Sbjct: 41 G-VKRVAIGNGQVIGAIEAEGREVIVFARAEGVSSLHVWANGARAKAYELRVVPAGAPRL 99
Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
+ +A R V +++ G + D R L++ + +
Sbjct: 100 RAEVEALLARIPGARSTEVGGRILIEGDDLSDDDRLRITALADRYPAVLDFTG------- 152
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSE 241
+ + V L V + E+ L+ +G + ++ A G+
Sbjct: 153 ------QVGWDRMVQLDVQVVEIPTSKLRDLGVRWDGMSQGGINAGLAWDAGSRGRVSRP 206
Query: 242 G---------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
G + + L ++ LA+P L A SG SA+F +GG+
Sbjct: 207 GEEIIETMGRVSSPAGYFGVNALLSSRIAMLAQSGEAVMLAQPQLLARSGASATFLAGGE 266
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
Y + + +T++ YGV+L TP V G I I+ E S ++ P+ R
Sbjct: 267 VPYSSTDTRGNSTTL-FKPYGVMLRITPRVDRNGIIRSLIEVEASSVDNALSVPGGPALR 325
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R+A T + SG T+V+ G L + + +G+P L IP+LGALF + R+ ETE+ I
Sbjct: 326 TRRASTEFNVRSGDTLVIGGFLSRERDEASDGLPWLKDIPVLGALFSSRRYQLRETELAI 385
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
TP L+ D + + G
Sbjct: 386 FVTPKLIAQAEPAM----ADRVRRG-------RGVLEAAFPEAPRLGTAVPAASG 429
>gi|258624763|ref|ZP_05719694.1| Flp pilus assembly protein [Vibrio mimicus VM603]
gi|258582925|gb|EEW07743.1| Flp pilus assembly protein [Vibrio mimicus VM603]
Length = 347
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 94/366 (25%), Positives = 149/366 (40%), Gaps = 42/366 (11%)
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ------------ 170
L+ TL D +I V V D VVL G V + + + L L +
Sbjct: 2 LKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLKKNVSKVNNHVIET 61
Query: 171 ------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
A V+N L + +Q+ +K+TIAEV L ++G + G
Sbjct: 62 GENNREEALQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLSELGVSYGDIGGGD 121
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
G ++ ++ A + LAEP L+ ISG++
Sbjct: 122 ----------------VGKFYNKLLDFTAQDIVAIIAASGNDDIGQVLAEPNLSVISGET 165
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341
ASF GG+ T ++ +YG+ L V I L + EVS
Sbjct: 166 ASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLSLLPEVSSLDSVNR 223
Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
++ + PS + RKA TTV+L G + VLAGLL + ++ IP+L IPILGALF +
Sbjct: 224 SDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPILGDIPILGALFSS 283
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
++ +R++TE+ I AT LV PV + P + D + ++ + P+ +
Sbjct: 284 TKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLLRIDLSGVDEPELQRTI 341
Query: 461 EGQNYK 466
+
Sbjct: 342 NAGGFN 347
>gi|298488959|ref|ZP_07006982.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298156457|gb|EFH97554.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 416
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 93/445 (20%), Positives = 158/445 (35%), Gaps = 77/445 (17%)
Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
++ A + I ++ PV + + V P ADV V+ L
Sbjct: 24 QSAWAASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGAPKIADVHVNGTDGFLLT 83
Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G G ++++ R+ + V + G
Sbjct: 84 GVAQGTTSLMVW------------------TACATAPRQSM-------------VFVRGR 112
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
+ + +V + EV R L
Sbjct: 113 AT------------ASMIESVTAPSADAELPSQV------------QTDIRFIEVSRTKL 148
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFET 258
K+ GS++ + G +F++
Sbjct: 149 KEASTSIFGKGSNNFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLA 208
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
+L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L
Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268
Query: 319 TPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
TPTV+ RI L++ EVSE I + ++P+ +R+ DT++ L G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLI 328
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDD 432
P L IPILGA FRNS+ R+E E+ + TP LV+P+A S P +
Sbjct: 329 SSSNVGSVSKFPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGE 388
Query: 433 HYS--VEDDAKAFFF--NRVNKIYG 453
+ +F ++ G
Sbjct: 389 GLRTYDPSFPRLYFLENGDFDRRDG 413
>gi|186473164|ref|YP_001860506.1| type II and III secretion system protein [Burkholderia phymatum
STM815]
gi|184195496|gb|ACC73460.1| type II and III secretion system protein [Burkholderia phymatum
STM815]
Length = 451
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 89/424 (20%), Positives = 167/424 (39%), Gaps = 21/424 (4%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
S LF + + ++ + + + +V +L VP +
Sbjct: 9 ALRCFASAALFMGVLAAGASAADATSAQRGVDADAAQNAA--VLDLYKGEVRMLNVPGTI 66
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
+ + + + V R + L ++ G ++++ G + + + D+
Sbjct: 67 KRIAIGNGKLLTANVVDGR-VMLLAESAGITSLVVWNERGVALQTTVRVAKGDVGMSAAQ 125
Query: 127 LRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
LR +A +RV+ V +VL G V + + +++ + KK +
Sbjct: 126 LRSVLAAVPGVRVQEVGPNIVLAGSVHREKAAAVKAAIADMTNVIDTTTIDEGDALKKTL 185
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
+ KV I EV R K IG + S F G + G +F
Sbjct: 186 HF-----------KVQIMEVTRTGQKDIGIAWDSQFAGPQVSGQ---GFIGSGAASGANF 231
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
+ G+ + + ++ LA P L SG +ASF +GG+ + G T
Sbjct: 232 FLAGIAS--TITSRINFAINNGDAFILAAPELNTKSGGTASFLAGGEVPIPKA-GALGTT 288
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
V YG+ L+ P V + I +QTE+S+ V+ G P + R A + + L +G
Sbjct: 289 DVEYKPYGIRLNIRPVVDANDIISATVQTEISQIDPSVSYGGFPGFLTRSASSDISLRAG 348
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
TI ++GL+ D G+P +++PI+G LFR+ F + +++ I TP + +P
Sbjct: 349 ETIAISGLVSADALNGSAGMPFFARLPIIGQLFRSDSFRAKNSDLVIFVTPLISEPSGEP 408
Query: 426 DLSR 429
+ +
Sbjct: 409 NTAL 412
>gi|330989176|gb|EGH87279.1| type II and III secretion system protein [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 416
Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/432 (21%), Positives = 156/432 (36%), Gaps = 77/432 (17%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ I ++ PV + + V DP ADV V+ L G G ++++
Sbjct: 37 AAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW- 95
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
R+ + V + G
Sbjct: 96 -----------------TACATAPRQSM-------------VFVRGRAT----------- 114
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ + +V + EV R LK+ GS+
Sbjct: 115 -ASMIESVTAPSADAELPSQV------------QTDIRFIEVSRTKLKEASTSIFGKGSN 161
Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
+ + G +F++ +L+A+E + T
Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYT 221
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LA P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L+
Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281
Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ EVSE I + ++P+ +R+ DT++ L G + V++GL+ P
Sbjct: 282 VAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPG 341
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443
L IPILGA FRNS+ R+E E+ + TP LV+P+A S P + + +
Sbjct: 342 LGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLY 401
Query: 444 FF--NRVNKIYG 453
F ++ G
Sbjct: 402 FLENGDFDRRDG 413
>gi|291279644|ref|YP_003496479.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans
SSM1]
gi|290754346|dbj|BAI80723.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans
SSM1]
Length = 406
Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats.
Identities = 57/262 (21%), Positives = 110/262 (41%), Gaps = 16/262 (6%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------- 224
+ K ++ +++ + QV ++ I EV + +++G Q S + +
Sbjct: 147 TDTKENIEKMKYYISKIDVPIK-QVMIEAKIVEVSKTGSRELGLQWSANTNINSTNKYFP 205
Query: 225 ------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
G + + + + F + L ALE+ + +++P +
Sbjct: 206 NTISIGGDTSGYMVNLPITNPGGTLSLLLGNYSGSFILDAKLQALEQQGLAKIVSQPKIV 265
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
++ + A SG + YK + T V + + + L TP V I L+I + SE
Sbjct: 266 TMNNKEAKIESGFEFHYKVIDD--DDTDVESDEAKLSLTVTPQVTPDNNILLKIVVDKSE 323
Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
P RKA+T V+L G T V+ GL+++ +P LSKIP++G LF
Sbjct: 324 LDFSKTVDGYPLKFTRKAETYVKLKDGETTVIGGLVQEKQSNSTSAVPGLSKIPLIGWLF 383
Query: 399 RNSRFNREETEIFIAATPFLVK 420
++ + + ++ I TP ++K
Sbjct: 384 KSKTNSHDLNDLVIFITPKIIK 405
>gi|327541686|gb|EGF28210.1| bacterial type II/III secretion system protein [Rhodopirellula
baltica WH47]
Length = 454
Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats.
Identities = 94/338 (27%), Positives = 154/338 (45%), Gaps = 29/338 (8%)
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
+ + +++RV + ++ ++ G V ++ D +AV ++E F + V+N
Sbjct: 1 MNSQLPLASLRVTPIGESAIISGYVTSVDDVDKAVAITEQFYTT-------------VIN 47
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFG-----GK 237
+ + G QV L I EV R L+++G +I + GPS G
Sbjct: 48 NIQVVGIQQVLLHTKIMEVSRTKLRELGVDLAILDDNFTLLNGPSGVLDVGAGIVEGDAG 107
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
F + +FET+++AL + LAEPT+ A G+ A FT GG+
Sbjct: 108 FGPIPLGDTNLRFNVNGNFETLINALHEQRLTKLLAEPTVVATHGRPARFTVGGRIP-TI 166
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRV 353
V G +T DYG + F P V+ PGRI L ++ EVSEP VN ++ ++
Sbjct: 167 VPGQNGQVQITYEDYGTSIDFLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTT 226
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R +T VE+ +G T LAGLL+ + P +P +G LFR + R E E+ I
Sbjct: 227 RYVETAVEMQAGQTFALAGLLQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLIL 286
Query: 414 ATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN 449
TP LV+ + ++ R P + DD + + + +
Sbjct: 287 VTPELVEAMDPHEVPRGGPGMNSHSPDDKEFYLYGHIE 324
>gi|299532819|ref|ZP_07046206.1| type II and III secretion system protein [Comamonas testosteroni
S44]
gi|298719043|gb|EFI60013.1| type II and III secretion system protein [Comamonas testosteroni
S44]
Length = 454
Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats.
Identities = 110/432 (25%), Positives = 174/432 (40%), Gaps = 35/432 (8%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
RTF L S + SV +P + + + ++I + + L +P
Sbjct: 10 SRTFSLKSLYLLCSLSLSVVTVPALAQQVPNAGESRAQQATAAREIKLVMGAQHELNLPG 69
Query: 65 DVQDVLVSDPTKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V+ + + D T A V + + L G + ++ Q + +++
Sbjct: 70 GVERIAIGDDTIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQR 129
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYA 177
+ LR A S I + G + Q + +A V+LS L +
Sbjct: 130 VE-----LRTAKASSLIEQQFA-------GELANAQLADKAKTVDLSSVQLKSNVVQVDV 177
Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
+ + + GF I G S + ++ G
Sbjct: 178 KVVEFNKTQMKKVG-----------LNLFSTAPNSSGFSFGIFGRGSYGTGGGSSTTGAA 226
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
F++ D+ + LE R LA PTL A+SGQSA+F SGG+
Sbjct: 227 ANPLTQAFNLLMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP- 285
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRV 353
V + TG ++ YG+ L +PTVLS RI L++ E SE N+ +PS
Sbjct: 286 VPAGTGMVAIQYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITT 345
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R+ADTTVEL G + V+ GL+ + + +PLL IPILG LF+ F ++E+E+ I
Sbjct: 346 RRADTTVELGDGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIV 405
Query: 414 ATPFLVKPVAMR 425
TP LVKP+A
Sbjct: 406 VTPRLVKPLARD 417
>gi|85859832|ref|YP_462034.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
gi|85722923|gb|ABC77866.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
Length = 717
Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 16/264 (6%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
++ L++ QV ++ TI E+ + G + I S G S + G
Sbjct: 452 NLLQALDVPAR-QVLIEATIVELTLTDELKYGVEWFIRNSWDGDSYTLGTLGKLGLEPLG 510
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--- 299
++ FE ++ AL + L+ P L + A+ G T
Sbjct: 511 LTYAFLSRTG--QFEALISALAEKSKANILSTPRLMVLDNMEATIQVGKDVPTVTGQIST 568
Query: 300 --------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
S++ + S+ GV+L PT+ + G + L I EVS+ GD P
Sbjct: 569 LDSVNTTDSTSVSQSIQYRSTGVMLKVKPTINTEGLMTLEITQEVSDIAETPGVGDSPII 628
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R+ +T++ G TIVL GL++++ + +PLL IPILG LF+ + +++TE+
Sbjct: 629 LTRRINTSIIAAHGQTIVLGGLMQENQSLGESKVPLLGDIPILGNLFKATSKTKDKTELL 688
Query: 412 IAATPFLVKPVAMRDLSRPDDHYS 435
+ TP ++ D + D
Sbjct: 689 VLVTPTIL--TDPNDAVKITDQLR 710
>gi|87120710|ref|ZP_01076603.1| general secretion pathway protein D [Marinomonas sp. MED121]
gi|86163938|gb|EAQ65210.1| general secretion pathway protein D [Marinomonas sp. MED121]
Length = 616
Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats.
Identities = 83/459 (18%), Positives = 167/459 (36%), Gaps = 35/459 (7%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
++ + L P L + NA +I+ I + + L+ I ++
Sbjct: 131 IKNAVAAELVPILRPLIPQYGHLAAVPTMNALIISDHADNIRSLEDLVERLDSTIEGEMA 190
Query: 64 VDVQDVLVSDPTKADVVVH---------SPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114
V + + + + +IL G G+ D+
Sbjct: 191 VIPLKHAWAGDVITLLQELTTTTTGKGARSSDVTTIVADERTNRLILKGKPGELNQIKDL 250
Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
+I+ DI + + ++I V+D +L G+V I+ + ET +
Sbjct: 251 IIKLDIPAEKTSRLQYIPLQYADATKVAD--LLKGVVGDIEKKEGNAPTLETNIQADEDL 308
Query: 175 QYANSSSKK--------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------- 217
+S+ V+ +++ QV ++ I E+ +++G Q
Sbjct: 309 NALLVNSEPGVMSEIYSVLKQIDVP-RAQVLIEAVIVEITVTDEEELGVQWLIGGSDEII 367
Query: 218 -SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
+S+G S + A + +L +F ++ AL+ T L+ P
Sbjct: 368 SGTNFTSAGSSANTIASSINSSTANTLATGGTAILGDTNFGAIIQALQSKTNSNLLSTPK 427
Query: 277 LTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ + Q A G ++T S + + + D G+ L TP + S + + +
Sbjct: 428 ILTLDNQEARILVGETRPFQTGEYSEDSDSTFVTTSREDVGLTLKVTPHINSGNEVKMEV 487
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
V + VR+ +T V TIVL GL++D+I + K+ +P L +P
Sbjct: 488 FQTVESASDEASDLGT-ITTVREVETVVIAGDRQTIVLGGLIQDNITESKQKVPFLGDLP 546
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
+G LFR+S F+ ++ + + P +++ A D
Sbjct: 547 FVGGLFRSSSFSIDKKNLLVFIRPTIIRGKAKADQITNT 585
>gi|119505085|ref|ZP_01627161.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080]
gi|119459067|gb|EAW40166.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080]
Length = 696
Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats.
Identities = 91/476 (19%), Positives = 163/476 (34%), Gaps = 59/476 (12%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
L+ + L P A + +NA +I+ I + +I +++ I
Sbjct: 155 RLENISAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDIASNIRRIVEIIDRMDRSAIQGT 214
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
V V++ + ++ ++ + ++ ++ D L + I
Sbjct: 215 QVIKLRYAVAEDVVQMLQTLEKQSRGDGAESNDEVTLVADKRTNSVVVTADELNSQRILD 274
Query: 123 LEMTLRRFIADS-NIRV------EMVSDTVVLHGMVRTIQDSQR-------------AVE 162
L L + S N++V + V VL +++ +
Sbjct: 275 LVTYLDTPLEQSGNVKVVYLEYADAVEVAEVLTRVMQNMSRLDTGGDRKPSTNTNSTIEA 334
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
T + +S + V+ L+I QV ++ I E+ +++G Q
Sbjct: 335 DEGTNALIITADADEMASLEAVIARLDIR-RAQVLVEAIIVEMEITEGQELGLQWIFADD 393
Query: 223 SSGPSKSFAADF-----------------------------GGKFVSEGGDFSVKGVLDR 253
S + + G G V D
Sbjct: 394 SGAFGSNVSTSSAQQQRNAAIGNALLGDENSNADIGVRDLAGALSQVPGTTLGWGVVGDD 453
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------GA 304
S +L+ALE L+ P+L + Q A T G + T S S
Sbjct: 454 LSMSVILNALETQGNANILSTPSLLTLDNQEAYITVGQNVPFVTGSYSNTGGASNVQNPF 513
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
++ + G+ L TP V + L I EVS + A RK +T V
Sbjct: 514 QTIERENVGITLKVTPQVNEGDSVVLDIVQEVSSISQQLLAAADVITNERKIETKVMAQD 573
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G +VL GL+KDD+Q ++G+P L IP+LG LFRN + ++ + + P +V+
Sbjct: 574 GDVVVLGGLVKDDVQDSQQGVPFLQDIPLLGRLFRNDVVSVTKSNLLVFIRPTIVR 629
>gi|170720034|ref|YP_001747722.1| type II and III secretion system protein [Pseudomonas putida W619]
gi|169758037|gb|ACA71353.1| type II and III secretion system protein [Pseudomonas putida W619]
Length = 419
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 101/470 (21%), Positives = 175/470 (37%), Gaps = 87/470 (18%)
Query: 2 RYLQRTFFTMMSIFLF--SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII 59
R + FF++ + L + P+ EA A + ++ +++ G +++ + L
Sbjct: 6 RCSSKRFFSLACLALLTVALLPNAHGASKGCEAFAQLPSVIEIDQGLQQELRLPL----- 60
Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
+ V DP ADV R + V +G ++
Sbjct: 61 -----AITRAAVGDPKVADVQPSGDRAVL----------VTAVGQGNTTLMLWTACAPGP 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + + G +
Sbjct: 106 HRAM---------------------LFVKGQASAAMA---------------ETGLPPSL 129
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ QV + EVRR K+ G + +GS++ S G
Sbjct: 130 DPE---------LPSQVQADIRFVEVRRTKYKEAGARLFFSGSNNSLIGSPGTVPGTSVT 180
Query: 240 S------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
G F++ F ++ALE + TLA P+LT +SG +ASF
Sbjct: 181 PGAVPVTSPQIPLNNGVFNIVWGGGSSRFLAAINALENSGFAYTLARPSLTVLSGLTASF 240
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGV 343
+GG+ S+ + S+ ++GV L TPTV+S RI L++ EVSE + +
Sbjct: 241 LAGGEIPIPVPSAGSDNFSIEYKEFGVRLALTPTVISRDRITLKVAPEVSELDYTNAVTI 300
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+P +R+ DT++ L G + +++GL+ ++ + + +P L +PILGA FR S
Sbjct: 301 GGTSVPGLSIRRTDTSISLADGESFIISGLVGNNTRSAVDKLPGLGNLPILGAFFRQSAL 360
Query: 404 NREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFNRVN 449
REETE+ + TP LV+P+A P + + FF N
Sbjct: 361 VREETELLMIVTPHLVQPLAANARLPELPGEGLRTYDPSWGRLFFMENGN 410
>gi|163801327|ref|ZP_02195226.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
gi|159174816|gb|EDP59616.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
Length = 416
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 74/366 (20%), Positives = 137/366 (37%), Gaps = 40/366 (10%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
I++ +N+ L + +D++V DV + +YL G+ VI+ G +
Sbjct: 37 INMSVNETKHLPLSYVPKDIVVGSDKVVDVNLADSNNLYLIAHEAGKTKVIVKGEEETTE 96
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
+ + H +++ V++ + ++G V+ + + +L +S
Sbjct: 97 YVIQVRDTDKDTHNLNKFLESAGYTDVEAVKVAEKIYINGAVKDKVEKRELNKLVRNAIS 156
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
+ ++ I QV + +T+AEV + I ++G
Sbjct: 157 RY------------YVDNTTITENRQVRINLTMAEVSKSIDDELGITW------------ 192
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G +S + S + L R L P++ +G +A+F +
Sbjct: 193 ------------GAGWSKIDGVTSKSLSATIGLLSRNNLATVLTRPSIIVTNGSTATFEA 240
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347
GG+ T V DYG+ L F P + I LR S+ + D
Sbjct: 241 GGEVPVLTYDDEN--VDVEFKDYGIKLEFKPNIKRDQSIDLRANVSSSQIADFIKLGGND 298
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P R +T + + G VLAGL+ + Q +P L +PI+G+LF + F +
Sbjct: 299 TPQLNTRSVNTELNVNDGDIFVLAGLIDNSQTQAVSKVPFLGYLPIIGSLFTSENFKSNK 358
Query: 408 TEIFIA 413
TE+ I
Sbjct: 359 TELMIF 364
>gi|192361327|ref|YP_001983786.1| general secretion pathway protein D [Cellvibrio japonicus Ueda107]
gi|190687492|gb|ACE85170.1| General secretion pathway protein D [Cellvibrio japonicus Ueda107]
Length = 681
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 97/523 (18%), Positives = 183/523 (34%), Gaps = 88/523 (16%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
L+ T + L P L + +NA +I + + + ++ + L+K+ I Q
Sbjct: 145 LKNTSAAKILAALRPLVPQYGHLTTYEPSNALIITDTRANVARMNELVVQLDKIGITQTD 204
Query: 64 VDVQDVLVSDPTK---ADVVVHSPRTMYLFGKNVGQAN---VILIGHD-GKQMLNLDILI 116
V + + P G VI+ +++ D +
Sbjct: 205 VIPLRYANATEVVNMLTQLEKPDPNR--------GMTTSPPVIVADKRINAVVISGDDMS 256
Query: 117 ERDIAHLEMTL-RRFIADSNIRV------EMVSDTVVLHGMVRTIQDSQRAVELS----- 164
+ + L L R ++N+RV + VL GM+++ S++A +
Sbjct: 257 RQRLKFLIDDLDRPQTKNANVRVVYLRYAKAEDVAKVLTGMMQSFTQSRQAEGAAPNTQQ 316
Query: 165 -------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
T + + +++ L+I QV ++ IAEV + K++G +
Sbjct: 317 PGVQADPATNSVLLTADVDTMDTMLSIVDSLDIR-RAQVLVEAIIAEVSDEDGKELGIEW 375
Query: 218 SITGSSSGPS-------------------------------KSFAADFGGKFVSEGGDFS 246
G + A G G F
Sbjct: 376 MYRDDKYGFGASANGSRGSIGGIGSAVLAASDKNASQDDKDTALANLASGLSGLSGQMFG 435
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----- 301
+ +R F VL ++ ++ L+ P+L A + G Q ++T S S
Sbjct: 436 FGRLGERTDFLAVLKLMQSSSKTNILSTPSLLTTDNNQAVISVGRQVPFRTGSYSAVGTG 495
Query: 302 ------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
+ T++ D G+ L TP + I L I+ EVS + + R+
Sbjct: 496 GNSTIGSPFTTINREDVGLKLEVTPHINEGDSIVLDIKQEVSSLSDVSSEDGI-ITNKRE 554
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T + G TIVL GL+ D++Q + +P+L IP+LG LFR+ ++ +T + +
Sbjct: 555 IQTQILSSDGETIVLGGLITDEVQTGERRVPVLGSIPVLGQLFRSQTSSKSKTNLLVFIR 614
Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
+V+ DD A+ + R ++ +
Sbjct: 615 ATVVR----------DDKVLTGSTAEKYRLIREEQLNHVRNRG 647
>gi|194446460|ref|YP_002042738.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194405123|gb|ACF65345.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
Length = 426
Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats.
Identities = 84/426 (19%), Positives = 164/426 (38%), Gaps = 21/426 (4%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
+RT ++I L + P+ K A ++ + + ++ + ++
Sbjct: 10 VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65
Query: 63 PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
P + + A V + + L + G + + Q + +
Sbjct: 66 PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 118
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
D L + + + +I ++ + + + + T N+ A
Sbjct: 119 DAERLRLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRMLLRDNRAAL 178
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ +K ++ +++ QV L I + L+++G + ++ ++ +
Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 237
Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V G ++ + L ALE+ + +A P L A Q AS G + Y
Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 297
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
+ S +GATSV + + + TPTVL GRI L+ I V V+ G++ +
Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 357
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ +
Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417
Query: 414 ATPFLV 419
TP LV
Sbjct: 418 ITPRLV 423
>gi|205357592|ref|ZP_03223780.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205330642|gb|EDZ17406.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
Length = 426
Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats.
Identities = 85/426 (19%), Positives = 163/426 (38%), Gaps = 21/426 (4%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
+RT ++I L + P+ K A ++ + + ++ + ++
Sbjct: 10 VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65
Query: 63 PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
P + + A V + + L + G + + Q + +
Sbjct: 66 PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 118
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
D L + + +I ++ + + + + T N+ A
Sbjct: 119 DAERLRFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 178
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ +K ++ +++ QV L I + L+++G + ++ ++ S
Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDL 237
Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V G ++ + L ALE+ + +A P L A Q AS G + Y
Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPY 297
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
+ S +GATSV + + + TPTVL GRI L+ I V V+ G++ +
Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 357
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ +
Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417
Query: 414 ATPFLV 419
TP LV
Sbjct: 418 ITPRLV 423
>gi|194451757|ref|YP_002047512.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205359079|ref|ZP_03224213.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194410061|gb|ACF70280.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205338987|gb|EDZ25751.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
Length = 426
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 84/426 (19%), Positives = 164/426 (38%), Gaps = 21/426 (4%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
+RT ++I L + P+ K A ++ + + ++ + ++
Sbjct: 10 VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65
Query: 63 PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
P + + A V + + L + G + + Q + +
Sbjct: 66 PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 118
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
D L + + + +I ++ + + + + T N+ A
Sbjct: 119 DAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 178
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ +K ++ +++ QV L I + L+++G + ++ ++ +
Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 237
Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V G ++ + L ALE+ + +A P L A Q AS G + Y
Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 297
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
+ S +GATSV + + + TPTVL GRI L+ I V V+ G++ +
Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 357
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ +
Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417
Query: 414 ATPFLV 419
TP LV
Sbjct: 418 ITPRLV 423
>gi|205359546|ref|ZP_03224342.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205344340|gb|EDZ31104.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
Length = 429
Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats.
Identities = 84/426 (19%), Positives = 164/426 (38%), Gaps = 21/426 (4%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
+RT ++I L + P+ K A ++ + + ++ + ++
Sbjct: 13 VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 68
Query: 63 PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
P + + A V + + L + G + + Q + +
Sbjct: 69 PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 121
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
D L + + + +I ++ + + + + T N+ A
Sbjct: 122 DAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 181
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ +K ++ +++ QV L I + L+++G + ++ ++ +
Sbjct: 182 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 240
Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V G ++ + L ALE+ + +A P L A Q AS G + Y
Sbjct: 241 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 300
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
+ S +GATSV + + + TPTVL GRI L+ I V V+ G++ +
Sbjct: 301 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 360
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ +
Sbjct: 361 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 420
Query: 414 ATPFLV 419
TP LV
Sbjct: 421 ITPRLV 426
>gi|254784514|ref|YP_003071942.1| general secretion pathway protein D [Teredinibacter turnerae T7901]
gi|237684660|gb|ACR11924.1| general secretion pathway protein D [Teredinibacter turnerae T7901]
Length = 661
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 82/466 (17%), Positives = 166/466 (35%), Gaps = 52/466 (11%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
L+ + L P + L +NA V++ + I + K++ ++ +
Sbjct: 133 LKNIAAAKVLPVLRPLVPQHSHLAAYDPSNAIVVSDTAANIERIKEVIEKIDTAAMPVTE 192
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
V S+ A + G + Q ++ + +L+ + L + + L
Sbjct: 193 VIELKYADSESLVATLAKLDGANK--QGNSANQITMVADKRNNAILLSGEDLQRQRVKQL 250
Query: 124 EMTL-RRFIADSNIRV------EMVSDTVVLHGMVRTIQDSQ------RAVELSETFLSQ 170
L R + N+RV VL +V+ + A + + +
Sbjct: 251 IRRLDRPQLQTGNVRVVYLEYATAKDVATVLSKVVQNMAKMTPGGDKGAARQGATVEADE 310
Query: 171 SGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + + + V++ L+I QV ++ I E+ + +G ++
Sbjct: 311 ATNSLLITAEGDQLDAIMAVVDRLDIR-RAQVLVEAIIVEMTLGDKESLGIDWMFKNATQ 369
Query: 225 GPSK----------------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
G + A S+G V G F +++
Sbjct: 370 GLIGASTAGGTGAAGVAAALFGGAEDAAAQLLTALGGSDGQTLGVAGESGGEDFLVLVNM 429
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGV 314
L+ + L+ PTL + A + G + T S + ++ D G+
Sbjct: 430 LQSNSNANILSTPTLLTMDNNEAMISVGQNVPFVTGSFTNAGGNGGTNPFQTIQRQDVGI 489
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
L TP V ++ L IQ E+S + RK +T V IVL GL+
Sbjct: 490 TLTVTPHVNEGDKVILDIQQEISSVSEEAGSASDVITNQRKVETQVMAKDRSVIVLGGLI 549
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+D++Q+ + +P+L IP++G LFR++ ++ + I P +++
Sbjct: 550 RDELQKSENRVPVLGSIPVMGRLFRSNSETLRKSNLMIFIRPTIIR 595
>gi|329895109|ref|ZP_08270837.1| General secretion pathway protein D [gamma proteobacterium
IMCC3088]
gi|328922510|gb|EGG29849.1| General secretion pathway protein D [gamma proteobacterium
IMCC3088]
Length = 672
Score = 200 bits (508), Expect = 5e-49, Method: Composition-based stats.
Identities = 81/480 (16%), Positives = 160/480 (33%), Gaps = 67/480 (13%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
L+ + L P A + +NA VI+ I + + +++ I +
Sbjct: 142 RLENISAAKLIPVLRPLVPQQAHMAAYTPSNAIVISDLASNISRINDLISQMDQSAIQET 201
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG--QANVILIG-HDGKQMLNLDILIERD 119
+ + V++ + + G + +++ ++ D L
Sbjct: 202 DILPLEYAVAEDVVKMLEQLNKSE----AAQAGGEETVLLVADTRTNSVLVTGDELQRAR 257
Query: 120 IAHLEMTLRRFIADS-NIRV------EMVSDTVVLHGMVRTIQDSQ------------RA 160
+ L L + + N++V + VL +++ I
Sbjct: 258 MRALVEHLDTPLQRAGNVKVVYLKYAKAADVAQVLTKVMQNIGRLDSSKSKTSGGHDATI 317
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217
T + ++ + V+ L+I QV ++ I E+ + +G Q
Sbjct: 318 EADEGTNSLIITADTDEMAALESVIYQLDIR-RAQVLVEAIIVEMEVIDGQSLGLQWLFA 376
Query: 218 ---------------------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+ ++ S G +
Sbjct: 377 NDSGVYGSSVSSDVSTAGAISSAVLGGNADAANPVGDFDLGQLAAALAGSPGLTLGWGAI 436
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302
+ S +L+AL++ + L+ PTL + Q A T G + T + +
Sbjct: 437 DNDLSMTVILNALKKQSNANILSTPTLLTLDNQEAYITVGQNVPFVTGAYTNTGSGGSGV 496
Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
++ + G+ L TP + + L I+ EVS + RK T V
Sbjct: 497 QNPFQTIERENVGITLTVTPHINDGDSVVLDIEQEVSSLTGLSSIASDLITNERKIQTKV 556
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G T+VL GL+KD++Q + +P+L IP+LG LFRN +T + I P +++
Sbjct: 557 LAGDGKTVVLGGLIKDNVQDGSQRVPVLGSIPLLGRLFRNDAVEVTKTNLLIFIRPTIIR 616
>gi|194470789|ref|ZP_03076773.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205358599|ref|ZP_02657680.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194457153|gb|EDX45992.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205333155|gb|EDZ19919.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 426
Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats.
Identities = 84/426 (19%), Positives = 163/426 (38%), Gaps = 21/426 (4%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
+RT ++I L + P+ K A ++ + + ++ + ++
Sbjct: 10 VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65
Query: 63 PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
P + + A V + + L + G + Q + +
Sbjct: 66 PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-FHV----HSQAWQKEHSARQ 118
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
D L + + + +I ++ + + + + T N+ A
Sbjct: 119 DAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 178
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ +K ++ +++ QV L I + L+++G + ++ ++ +
Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 237
Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V G ++ + L ALE+ + +A P L A Q AS G + Y
Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 297
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
+ S +GATSV + + + TPTVL GRI L+ I V V+ G++ +
Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 357
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ +
Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417
Query: 414 ATPFLV 419
TP LV
Sbjct: 418 ITPRLV 423
>gi|148556416|ref|YP_001263998.1| type II and III secretion system protein [Sphingomonas wittichii
RW1]
gi|148501606|gb|ABQ69860.1| type II and III secretion system protein [Sphingomonas wittichii
RW1]
Length = 431
Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats.
Identities = 102/438 (23%), Positives = 158/438 (36%), Gaps = 59/438 (13%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++S L ++ + + +S+ L +L P +
Sbjct: 1 MTRLLSTALVAAVALIGPAAATAAED---------------SLSLQLRVKRVLDYPKPIA 45
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
+ V V S R++ + G A + + DG + I +
Sbjct: 46 RIQVDREGVIAVRAPSRRSLGVTAIGTGLATLSVFAADGSLIGRTAISVG---------- 95
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
+ V D L G V + +S+ + N
Sbjct: 96 --LPGGATGDVRADEDDGSLSGTVDGLAARAALQR---------------SSADRGAANS 138
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---- 243
L++ GE V + V A V L+ +GF S + A G + G
Sbjct: 139 LSVNGEQVVAVDVQFAAVSSSTLRALGFNFSKLSGDLQGAIVSPATLGNFSSTSTGLTLD 198
Query: 244 -------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HL 294
F++ VL AL + LA+PTL SG+ ASF +GG+
Sbjct: 199 TTAPLQNAFNLFLSAPNRGITAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEVPIP 258
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPS 350
+ + + ++GV L TP VLS RI L+I EVSE +P
Sbjct: 259 VPQNNGNGNGIGIEYKEFGVRLKVTPFVLSKDRIVLKIAPEVSELDYTNGVRLQGYVVPG 318
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
R R +TTV+L SG + V+AGL + KE P L +P+LGALF+ + RE E+
Sbjct: 319 LRRRSTETTVQLGSGQSFVIAGLTYSNSVVSKEKTPFLGDLPVLGALFKRQQNQRESQEL 378
Query: 411 FIAATPFLVKPVAMRDLS 428
I ATP LV P+ +
Sbjct: 379 IIVATPRLVGPMDPSRIP 396
>gi|197265045|ref|ZP_03165119.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197243300|gb|EDY25920.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
Length = 426
Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats.
Identities = 83/426 (19%), Positives = 163/426 (38%), Gaps = 21/426 (4%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
+RT ++I L + P+ K A ++ + + ++ + ++
Sbjct: 10 VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65
Query: 63 PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
P + + A V + + L + G + + Q + +
Sbjct: 66 PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 118
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
D L + + + +I ++ + + + + T N+ A
Sbjct: 119 DAERLRLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 178
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ +K ++ +++ QV L I + L+++G + ++ ++ +
Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 237
Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V G ++ + L ALE+ + +A P L A Q AS G + Y
Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 297
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
+ S +GATSV + + + TPTVL G I L+ I V V+ G++ +
Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGLIRLKLHISQNVPGQVLQQADGEVLAIDK 357
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ +
Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417
Query: 414 ATPFLV 419
TP LV
Sbjct: 418 ITPRLV 423
>gi|119943949|ref|YP_941629.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37]
gi|119862553|gb|ABM02030.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37]
Length = 689
Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats.
Identities = 64/296 (21%), Positives = 120/296 (40%), Gaps = 6/296 (2%)
Query: 129 RFIADSNIRVEMV---SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
+ I+V + +L ++ + AV + + ++ A + K M
Sbjct: 389 APLYSEFIQVNYAKVADISAMLSSDKTSLLSERGAVSVDNRTNTLLVKDTAAVIDAVKKM 448
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
+ QV ++ + V + +++G + +T +SS S + + F
Sbjct: 449 IQILDIPVRQVVIEARMVTVDDSVSEELGVKWGMTSTSSSTVDSLNVNLPATDAAGTIAF 508
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
+ + + L ALE +A P +T + Q+A G + Y +SS GAT
Sbjct: 509 KLAKFSNGDILDLELSALESENKAEIIASPRITTANQQTAYIEQGTEIPYVESASS-GAT 567
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELP 363
SV + L TP + ++ L ++ + G+ + +K T V +
Sbjct: 568 SVAFKKAVLSLTVTPQITPDNKVILDLEITQDTVGETVSAGTGEAVAIDTQKIGTQVLVG 627
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G T+VL G+ + +PLL IP LGALFR++ ++E+ I TP +V
Sbjct: 628 NGETLVLGGIYQQRNSIAVSKVPLLGDIPYLGALFRSTNEENTKSELLIFVTPRIV 683
>gi|255020086|ref|ZP_05292157.1| type II and III secretion system protein [Acidithiobacillus caldus
ATCC 51756]
gi|254970448|gb|EET27939.1| type II and III secretion system protein [Acidithiobacillus caldus
ATCC 51756]
Length = 502
Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 77/439 (17%), Positives = 150/439 (34%), Gaps = 59/439 (13%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
A+ + + + I + +V ++ V+ V + D V + L G
Sbjct: 13 AIAMAIPAQAAEDRTIDLYAGQVRVIPTK-PVKRVAIGDGKVLSTTVVDGNELLLLGDAE 71
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN----IRVEMVSDTVVLHGM 150
G+ ++ + DG + ++ +++ +R + IRV V +
Sbjct: 72 GETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNL 131
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
T RA++ + + +K V L V I E+R+ +L
Sbjct: 132 APTTLARVRALQ--ALYPKTIVLATPSPFDMEK-----------MVWLDVNILEIRKSVL 178
Query: 211 KQIGFQHSITGSSSGPSKS--------------------------------FAADFGGKF 238
+ G S + G
Sbjct: 179 ENFGVDWSKQIPGPFAAFGKDFVGPRNVATVPLGQDLTQPPVAGTGVRVTPPLGSLNGAI 238
Query: 239 VSEGGDFSVKGVLDRFSFET---VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ G + ++ +A P L+A SG F +GGQ
Sbjct: 239 DLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPI 298
Query: 296 KTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMP 349
++ +VT DYG+ L F P V + +R+ +VS+ N +P
Sbjct: 299 LQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVP 358
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ R+++ + + G T+V++GL+ + +P L IPILG LF+++ F T+
Sbjct: 359 GFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTD 418
Query: 410 IFIAATPFLVKPVAMRDLS 428
+ I TP +V ++ ++
Sbjct: 419 LVILVTPRVVSAASLENIR 437
>gi|331005872|ref|ZP_08329224.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989]
gi|330420316|gb|EGG94630.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989]
Length = 659
Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 83/448 (18%), Positives = 165/448 (36%), Gaps = 46/448 (10%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L P A L + +NA +++ + I + I +++ + + V + +
Sbjct: 161 VLRPLAPQHAHLAAYEPSNAIIVSDTVANIARLTDIIERIDRAGVAETDVMPLEYAQA-A 219
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
A ++ + KN QA ++ ++ D + + L L S
Sbjct: 220 ELATILQQLSKNDQDSPKNT-QAVIVADQRSNSILVTGDQVRRNKVRELVARLDVSQPQS 278
Query: 135 -NIRV------EMVSDTVVLHGMVRTIQD------------SQRAVELSETFLSQSGRNQ 175
N+RV + VL +V +I ++ A ++ +
Sbjct: 279 GNVRVIYLEYADAEEVATVLAKVVSSISKLEPDSAKGAKPSAENASVEADPATNSLLITA 338
Query: 176 YANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
A++ V+ L+I QV ++ I E+ D+ +++G + + ++G S +
Sbjct: 339 DADTMESLLSVIKRLDIR-RAQVLVEAIIVEITNDLSRELGVEWAAYKQNNGFIGSRNSA 397
Query: 234 FGGKFVSE--------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
G + G G + F +++ + + L+ P+L
Sbjct: 398 TLGTLATAIESGDGIAGAPNFTGQGLGFFGNSNGVDFAGLINFFQGSAEANVLSTPSLLT 457
Query: 280 ISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
A + G + T S+ ++ D G+ L TP + + L I
Sbjct: 458 TDNNEAEISIGQNVPFVTGSFTTSSGDSTDPFQTIEREDVGISLKVTPQINEGDTVNLEI 517
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
Q EVS A D+ RK T V G TI+L GL+ ++++Q ++ +P L IP
Sbjct: 518 QQEVSSISNSSQASDV-ITNERKISTKVIAQDGETIILGGLISNEVRQDEQKVPFLGDIP 576
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
+LG LFRN + + + +++
Sbjct: 577 LLGGLFRNDSTTSSKQNLMVFLRATILR 604
>gi|207858728|ref|YP_002245379.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|206710531|emb|CAR34889.1| type II secretion system protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
Length = 412
Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats.
Identities = 83/421 (19%), Positives = 161/421 (38%), Gaps = 21/421 (4%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I L + P+ K A ++ + + ++ + ++ P
Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56
Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+ + A V + + L + G + + Q + +D L
Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ + + +I ++ + + + + T N+ A + +K
Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRMLLRDNRAALAELEK 169
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
++ +++ QV L I + L+++G + ++ ++ S
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAA 228
Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V G ++ + L ALE+ + +A P L A Q AS G + Y+ S
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
+GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408
Query: 419 V 419
V
Sbjct: 409 V 409
>gi|330722019|gb|EGG99947.1| General secretion pathway protein D [gamma proteobacterium
IMCC2047]
Length = 338
Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 113/290 (38%), Gaps = 12/290 (4%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKF 238
K V+ L+I QV ++ I EV +L +G Q + S+G +F A +
Sbjct: 14 KGVVQKLDIR-RKQVLVEAVIVEVNDSVLDDLGVQWQTSTPSNGEFSAFNAIPANISTPA 72
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ G G S ++ ALE T L+ PT+ + + A G + T
Sbjct: 73 LPTLGSGLTLGYFKDNSLRALIRALESDTKANVLSTPTIVTLDNEEAEILVGSNVPFITG 132
Query: 299 SSST-------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
S + ++ D G+ L P + + L I+ V
Sbjct: 133 SETNESSPTSNPFQTIQRQDIGITLKVKPRINENDSMTLAIEQTVESIATSAVNTADIVT 192
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R T V L +VL GL+ D+ ++ +P+L IP+LG LFR++ E+ +
Sbjct: 193 NKRNIKTNVLLEDDQVLVLGGLISDESSNVESKVPVLGHIPVLGRLFRSTSTKVEKKNLM 252
Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
+ P ++ + + D Y+ + + + ++I+ PK+ +
Sbjct: 253 VFIHPMILSDLERSN-KLTSDRYNSMRNKQQQYNGDRDRIFIPKQPPLLP 301
>gi|16766776|ref|NP_462391.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16422046|gb|AAL22350.1| putative transport protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|261248643|emb|CBG26481.1| type II secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267995705|gb|ACY90590.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301160031|emb|CBW19550.1| type II secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312914512|dbj|BAJ38486.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|323131847|gb|ADX19277.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|332990340|gb|AEF09323.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 412
Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats.
Identities = 83/421 (19%), Positives = 160/421 (38%), Gaps = 21/421 (4%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I L + P+ K A ++ + + ++ + ++ P
Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56
Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+ + A V + + L + G + + Q + +D L
Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ + +I ++ + + + + T N+ A + +K
Sbjct: 110 RFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
++ +++ QV L I + L+++G + ++ ++ S
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAA 228
Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V G ++ + L ALE+ + +A P L A Q AS G + Y+ S
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
+GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408
Query: 419 V 419
V
Sbjct: 409 V 409
>gi|320087902|emb|CBY97664.1| Protein transport protein hofQ Flags: Precursor [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 412
Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats.
Identities = 82/421 (19%), Positives = 161/421 (38%), Gaps = 21/421 (4%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I L + P+ K A ++ + + ++ + ++ P
Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56
Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+ + A V + + L + G + + Q + +D L
Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ + + +I ++ + + + + T N+ A + +K
Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
++ +++ QV L I + L+++G + ++ ++ +
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228
Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V G ++ + L ALE+ + +A P L A Q AS G + Y+ S
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
+GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408
Query: 419 V 419
V
Sbjct: 409 V 409
>gi|260768627|ref|ZP_05877561.1| type II and III secretion system protein [Vibrio furnissii CIP
102972]
gi|260616657|gb|EEX41842.1| type II and III secretion system protein [Vibrio furnissii CIP
102972]
Length = 387
Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats.
Identities = 92/411 (22%), Positives = 162/411 (39%), Gaps = 67/411 (16%)
Query: 44 IGKGKKISIGLNKVIILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
+ + I++ N L V + V V+DP A + V + T+ + N G ++++
Sbjct: 20 VHAAEPITLSENAQTSLSVGEQQITRVAVADPNVATIDVLNKNTLLINSHNGGSTSLLVW 79
Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
+ + + + N++V+ ++ ++ S+ A++
Sbjct: 80 LKNSPSPKAYQLHVVPSLVSTT----------NVQVQT---------DIKVVEVSKSALK 120
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
+ F + N + +N
Sbjct: 121 EAGFFFGKQSGNTTFGIGNNAALN------------------------------------ 144
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G + + G F+ F+V + + AL TLAEP+L +SG
Sbjct: 145 --GGNFAGELLSGNSFLPLSNAFNVVIGDMSRGILSTISALNANGFAYTLAEPSLVTMSG 202
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
+A+F +GG+ Y SS G ++ ++GV L+ +PTV+ RI L++ EVSE
Sbjct: 203 HTATFLAGGEFPYPKA-SSDGDITIEFKEFGVRLNLSPTVMKDNRIMLKVAPEVSELNYN 261
Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
+ +P VR+ DTTV+L G T V++GL+ + P L IPILGA F
Sbjct: 262 NAVSTGGVLVPGMSVRRTDTTVQLGDGETFVISGLISSSTMNNSDRFPGLGDIPILGAFF 321
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFF 445
++RF + + E+ + TP LVKP+A P + Y D + F
Sbjct: 322 SSTRFEKNDKELMMVVTPHLVKPIAKGATLPPLPGEIYRNYRPDFFELVFL 372
>gi|62181990|ref|YP_218407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|62129623|gb|AAX67326.1| putative transport protein, possibly in biosynthesis of type IV
pilin [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|322716478|gb|EFZ08049.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 412
Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats.
Identities = 83/421 (19%), Positives = 163/421 (38%), Gaps = 21/421 (4%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I L + P+ K A ++ + + ++ + ++ P
Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQALA-EQERQNLVVSPDVSG 56
Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+ + A V + + L + G + + Q + ++D L
Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSAQQDAERL 109
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ + + +I ++ + + + + T N+ A + +K
Sbjct: 110 RLQANLPLENRSINLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
++ +++ QV L I + L+++G + ++ ++ + A
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVATLSSDLSVAAA 228
Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V G ++ + L ALE+ + +A P L A Q AS G + Y+ S
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
+GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408
Query: 419 V 419
V
Sbjct: 409 V 409
>gi|238913611|ref|ZP_04657448.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 412
Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats.
Identities = 82/421 (19%), Positives = 161/421 (38%), Gaps = 21/421 (4%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I L + P+ K A ++ + + ++ + ++ P
Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVSVVQVLQALA-EQERQNLVVSPDVSG 56
Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+ + A V + + L + G + + Q + +D L
Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ + + +I ++ + + + + T N+ A + +K
Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
++ +++ QV L I + L+++G + ++ ++ +
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228
Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V G ++ + L ALE+ + +A P L A Q AS G + Y+ S
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
+GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408
Query: 419 V 419
V
Sbjct: 409 V 409
>gi|85705572|ref|ZP_01036670.1| type II and III secretion system protein [Roseovarius sp. 217]
gi|85669997|gb|EAQ24860.1| type II and III secretion system protein [Roseovarius sp. 217]
Length = 441
Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats.
Identities = 87/448 (19%), Positives = 172/448 (38%), Gaps = 38/448 (8%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
+ ++ +++++ K I+L V +V V VSD T AD + S +++FGK VG
Sbjct: 22 LPSVLSSPASAQERLTVEQGKSILLPVGDNVDTVFVSDTTVADASISSNNRVFVFGKEVG 81
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
+ ++I + +++ ++ + ++ I VE ++++ G+V + +
Sbjct: 82 ETSLIATSTYADSDMTFTVVVTHKLSEIRSVIQSRFPGEQIAVESSRGSLMITGIVSSDR 141
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
+ V E+ ++ +++ L +A + + L+V + EV R ++ G
Sbjct: 142 VRETLVTTLESAAPETT-----------IIDRLRVASSNIIRLEVKLLEVSRTQVENFGI 190
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ T +++G + + G K S L L E
Sbjct: 191 DWNATVTANGFFLGTS--------NRGVLSVGKSDTAESSLNAALDVLISNGIATIAQET 242
Query: 276 TLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
L+ ++G+ A F+ GG+ SS G + G L FTP++ ++ L
Sbjct: 243 VLSTVNGEEALFSVGGEIPIPTFIPVDSGSSDGNFQLDFKFIGTSLSFTPSIAPGNKLRL 302
Query: 331 RIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I + +S + VN P+ R T VEL V+AG+ ++D
Sbjct: 303 LIDSTISSQGQTSSTVNGNVFPNLNTRSFRTNVELSDRQPFVIAGVTRNDTSNDLRQDRG 362
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFF 445
I+ +L R E+ + TP L+ + + + P + +
Sbjct: 363 TGLSRIVDSLLGQDRVTANSQELVVIVTP-LLTELEPQSIQERLP----APLSNLGFILS 417
Query: 446 NRVNKIYGPKEASEVEGQNYKGAIGFIY 473
NR ++ + N GA GF Y
Sbjct: 418 NRDSR----TAITHEPRYNAFGAAGFRY 441
>gi|322831067|ref|YP_004211094.1| general secretion pathway protein D [Rahnella sp. Y9602]
gi|321166268|gb|ADW71967.1| general secretion pathway protein D [Rahnella sp. Y9602]
Length = 659
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 24/272 (8%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
Q S ++V+ L+I QV ++ I EV+ +G Q S
Sbjct: 321 TAQQDVMQSLEQVITKLDIR-RAQVLVEAIIVEVQDGNGLNLGIQWSNNQVGGTQFTGTG 379
Query: 232 ADFG------------GKFVSEGGDFSVKGVLDR-------FSFETVLHALERATAIRTL 272
A G S+ S + + +L AL + L
Sbjct: 380 APISTVAAGVRQYKKEGIISSDNPLSSTLQTFNGMTAGFFSGDWNVLLTALSTSNKNDIL 439
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRI 328
A P++ + + ASF G + + S +T +SV G L TP + +
Sbjct: 440 ATPSIVTLDNKEASFNVGQEVPSLSGSQTTSGDNIYSSVVYKTVGTKLKVTPQINEGDSV 499
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ I+ EVS N+ P++ R V + +G T+VL GLL D ++ K +PLL
Sbjct: 500 LMEIEQEVSSVDTSTNSSLGPTFNTRTISNAVLVRTGETVVLGGLLDDSTKETKSKVPLL 559
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP +G LFR + + + + P +++
Sbjct: 560 GDIPWIGNLFRYTSTESAKRNLMVFIRPTIIR 591
>gi|56415404|ref|YP_152479.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197364334|ref|YP_002143971.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|56129661|gb|AAV79167.1| type II secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197095811|emb|CAR61383.1| type II secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 412
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 83/421 (19%), Positives = 162/421 (38%), Gaps = 21/421 (4%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I L + P+ K A ++ + + ++ + ++ P
Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQALA-EQERQNLVVSPDVSG 56
Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+ + A V + + L + G + + Q + +D L
Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ + + +I ++ V + + + + T N+ A + +K
Sbjct: 110 RLQANLPLENRSISLQYVDTGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
++ +++ QV L I + L+++G + ++ ++ +
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228
Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V G ++ + L ALE+ + +A P L A Q AS G + Y+ S
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
+GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408
Query: 419 V 419
V
Sbjct: 409 V 409
>gi|116328309|ref|YP_798029.1| Type II secretory pathway component, protein D [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116331035|ref|YP_800753.1| Type II secretory pathway component, protein D [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
gi|116121053|gb|ABJ79096.1| Type II secretory pathway component, protein D [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116124724|gb|ABJ75995.1| Type II secretory pathway component, protein D [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
Length = 598
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 81/438 (18%), Positives = 160/438 (36%), Gaps = 39/438 (8%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKIS--IGLNKVIILQVPVDVQDVLVSDPTKADV 79
++A+ P ++ + + E+G + I+ I + ++ ++ + + +
Sbjct: 132 ALARSPVVRVGKELIP---ETEVGDYRTITQIIPIENTKPEELEPILKRLTSPNTDV--I 186
Query: 80 VVHSPRTMYLFGKNVGQANVILI----------GHDGKQMLNLDILIERDIAHLEMTLRR 129
V + T+ L G ++++ G D+ I +
Sbjct: 187 VYRNTNTIVLSGSGADINKLLVLINELDLKLEEASPGAIASAGDVHIYTLEHSEAEKIAA 246
Query: 130 FI---ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
+ + ++ E +S + G + + +AV E+ + +K++
Sbjct: 247 TLVKLDNPVVQSEELSPEKKVPGQIPMKVEKIKAVGHKESNSVIVTATNAEWAEIRKIIK 306
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
+L+ + QV L+V I E+ L G G + G S + S G
Sbjct: 307 VLD-SARKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSNGQINP 365
Query: 247 VKGVLDRFSFETV----------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
L FS + L A + L+ P + + Q A + G +
Sbjct: 366 NVNTLSGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQDVPVR 425
Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
T S + G + G+ L FTP V RI L + E+ AG
Sbjct: 426 TQSRNAGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNRITLELFQEIKNIAEIALAGGN 485
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P++ R+ T++ + + +IV+ GL+ +D Q+ IP L IP LG LF+ + ++T
Sbjct: 486 PTFNRREIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTEKIKKT 545
Query: 409 EIFIAATPFLVKPVAMRD 426
+ + TP ++ D
Sbjct: 546 NLMVFITPHILDSRENAD 563
>gi|85711968|ref|ZP_01043022.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145]
gi|85694154|gb|EAQ32098.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145]
Length = 393
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 85/386 (22%), Positives = 152/386 (39%), Gaps = 36/386 (9%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
+ + +++ + + +L + V+++D A + S T+ + G G
Sbjct: 11 AAWVQTSNAVTTENLTLTVGQSELLTI-TPSTQVMIADEALAQAKLISQDTLLVRGLLPG 69
Query: 96 QANVILIGHDGK--QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
++ LIG + K + + + + + L+ R + N V + L G +
Sbjct: 70 TTDMWLIGPNDKRVVITIVHAVPKTIVTRLKTWARDY---PNFNVHEEGQHIELSGSLP- 125
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ +L E + + R + LKVTI E+++ ++Q+
Sbjct: 126 ALERTALKKLIEPYPNIIDRTVSTRVDHPML------------RLKVTILEIKQQFVQQL 173
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G Q GV + + LE+ A + LA
Sbjct: 174 GIQWDSQIDGPNWQWGRQ----------------GGVQWSPLLMSNIQLLEQQGAAKLLA 217
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
P LT SGQ ASF +GG+ V G V+ +YGV L PTV + +I ++
Sbjct: 218 TPVLTTQSGQPASFLAGGEIPIPQVV-GQGMQDVSFREYGVRLTIEPTVSAESKITAKLS 276
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
EVS V +P R+ + + G T+VL+GLL D + + G+P L ++PI
Sbjct: 277 AEVSNIDPAVEVNGVPGILTRRTEAVLSSRHGETVVLSGLLSTDSSESEAGLPGLKQLPI 336
Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
G +F++ + TE+ I T +V
Sbjct: 337 AGEVFKHRGQRNQHTELLIFVTSEIV 362
>gi|322629821|gb|EFY26594.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322659197|gb|EFY55449.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|323227365|gb|EGA11531.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323245960|gb|EGA29947.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323250737|gb|EGA34615.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323261394|gb|EGA44980.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
Length = 412
Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats.
Identities = 82/421 (19%), Positives = 160/421 (38%), Gaps = 21/421 (4%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I L P+ K A ++ + + ++ + ++ P
Sbjct: 1 MKRWIAIILIVLMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56
Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+ + A V + + L + G + + Q + +D L
Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ + + +I ++ + + + + T N+ A + +K
Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
++ +++ QV L I + L+++G + ++ ++ +
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228
Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V G ++ + L ALE+ + +A P L A Q AS G + Y+ S
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
+GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408
Query: 419 V 419
V
Sbjct: 409 V 409
>gi|209518484|ref|ZP_03267306.1| type II and III secretion system protein [Burkholderia sp. H160]
gi|209501117|gb|EEA01151.1| type II and III secretion system protein [Burkholderia sp. H160]
Length = 684
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 78/483 (16%), Positives = 167/483 (34%), Gaps = 72/483 (14%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK-- 76
+ S+ + P + A + + + + +++ ++ + + + V++ T
Sbjct: 190 AASSIMRTPVTLQFRDANVRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNATLQD 246
Query: 77 ----------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
D + T++++ + + + L + ++
Sbjct: 247 TVNMILMQNQLDKKQLNANTLFIYPATPAK-----QLEYQELKVRTFQLSNVEAKQIQSL 301
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L+ + + V+ ++TV + G TI+ +++ ++ L
Sbjct: 302 LKSLLKIKEVVVDERANTVTIRGTPDTIRVAEQM--IAAQDLPDPE-------------- 345
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
V L+V + EV D L +G + + S PS + S
Sbjct: 346 ---------VILEVKVLEVSHDRLTDLGIAWPNSFTVSTPSTVDTWGELHHLPINALNVS 396
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
F T LA P++ A + + A G + + SS+
Sbjct: 397 GLSATANFKL--------TDTDANLLASPSIRARNKEKARILIGDKVPVISSSSTPSTSG 448
Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYR 352
++ D G+ L P V +G+++ EVS +++ +
Sbjct: 449 PSYAQTIQYLDVGIKLEVEPQVYRDADVGMKLNLEVSNITNTISSSNSTTGLTSLAYEIG 508
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R A T++ + G + +L GL++D+ + + +P L ++P+LG LF N + ++TEI +
Sbjct: 509 TRSASTSLRVHDGESQILGGLIQDEDRLTADKVPGLGQLPVLGRLFSNHNGDHKKTEIVL 568
Query: 413 AATPFLVKP-----VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
TP +V+P ++L D D + P A G G
Sbjct: 569 EITPHIVRPQTSADADTQELWSGTDVNVHADQLRLDPVGAEATEQMPVPAVRTPGNVGGG 628
Query: 468 AIG 470
G
Sbjct: 629 TTG 631
>gi|17547022|ref|NP_520424.1| GSPD-like protein [Ralstonia solanacearum GMI1000]
gi|17429323|emb|CAD16010.1| probable type II secretory pathway, gspd-related protein [Ralstonia
solanacearum GMI1000]
Length = 789
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 80/434 (18%), Positives = 155/434 (35%), Gaps = 67/434 (15%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
+ S+ + P + A + + + + +S+ ++ + + + + VS+ + D
Sbjct: 185 AAASIMRKPVSLQFRDANVRMVFEALSRTTGLSVIFDRDVRVDLK---TTIFVSNASLED 241
Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
V V + T++++ + + L D H++
Sbjct: 242 TVDMILLQNQLAKKVLNANTVFIYPATPAK-----QQEYQDLKVRTFQLSNTDAKHIDTL 296
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L+ + I + ++TV + TI+ ++R ++ L +
Sbjct: 297 LKNLLKIKEIVTDERANTVSIRATPETIRVAERM--IAAQDLPEPE-------------- 340
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
V L+V + EV RD L +G + S PS + S
Sbjct: 341 ---------VMLEVEVLEVSRDRLTDLGIDWPNSFSLGTPSSASTWGALHHLTVNQLTAS 391
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
V T LA P + + + A G + + SS
Sbjct: 392 GLSVTANLKL--------TDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSG 443
Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYR 352
S+ D G+ L P V +G+++ EVS +++ +
Sbjct: 444 PVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNAQTGLSSLAYQIG 503
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R A TT+ L G T +L GL++D+ + +P L ++P+LG LF N + ++TEI +
Sbjct: 504 TRNASTTLRLKDGETQILGGLIQDEDRDAANKVPGLGQLPVLGRLFSNHNGDHKKTEIVL 563
Query: 413 AATPFLVKPVAMRD 426
TP +V+P D
Sbjct: 564 QITPHIVRPQLAAD 577
>gi|327399337|ref|YP_004340206.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411]
gi|327181966|gb|AEA34147.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411]
Length = 704
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 60/257 (23%), Positives = 110/257 (42%), Gaps = 32/257 (12%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGK---------------- 237
V + I E+ + +Q+G Q + SK+F G
Sbjct: 447 VEIDARIVEISKSFERQLGIQWGGNFFNQNINNSKTFIGVGGSSSPVDVSSGLPPSESFS 506
Query: 238 --------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ ++ VL ++ + L E + L+ P + + +
Sbjct: 507 NDNFVVNLPAGLSDAPTSTVRLAIGNVLANYNLDLKLTMGEIEGYSKVLSTPKVITLDNE 566
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
A +SG + Y+ + ++GATSV+ + + L TP + ++ L+++ + P
Sbjct: 567 PAKISSGQEIPYQESAGASGATSVSFKEATLSLEVTPHITRNDQVILKLKIKKDSPDYSH 626
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+ G P + D+TV L +G TIV+ GL++ Q+ G+P L +IP+LG LF+ R
Sbjct: 627 SVGGEPPINTNEVDSTVILSNGQTIVIGGLMQSTTQKTVSGVPGLMRIPLLGWLFKTKRI 686
Query: 404 NREETEIFIAATPFLVK 420
+TE++I TP +VK
Sbjct: 687 YNPKTELYIFVTPHIVK 703
>gi|308271298|emb|CBX27906.1| hypothetical protein N47_G32300 [uncultured Desulfobacterium sp.]
Length = 695
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 61/241 (25%), Positives = 102/241 (42%), Gaps = 12/241 (4%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV ++ TIAE+ Q G + I + G + + + G F+ + +
Sbjct: 443 KQVLIEATIAELTLSDDLQYGLEWYINNTLQGGAYTLGTSGNLGLSASGLAFNF--ISES 500
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTGA 304
+ ++ A A L+ P L I + A+ G T S+
Sbjct: 501 KKVKGLISAFAIAGKTNILSTPRLMVIDNKEATIQVGEDVPTVTSQVTSTESTITSTNLL 560
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
SV + GV+L PT+ + G + L + EVSE P +RK +TTV +
Sbjct: 561 QSVQYRNTGVILRVKPTINTEGLLTLELSQEVSE-TGEKGVAGSPVILMRKINTTVVIAQ 619
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G T++L GL+K+ + +P L IPI+G LF+ + + +TE+ I TP ++ V
Sbjct: 620 GQTLLLGGLMKEKNTTGESKVPGLGDIPIIGNLFKATSKTKNKTELIILVTPTIISNVDD 679
Query: 425 R 425
Sbjct: 680 A 680
>gi|16762799|ref|NP_458416.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29144286|ref|NP_807628.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213053391|ref|ZP_03346269.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213416770|ref|ZP_03349914.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213426742|ref|ZP_03359492.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213646579|ref|ZP_03376632.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213852697|ref|ZP_03382229.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|25324276|pir||AB1000 type II secretion system protein [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16505105|emb|CAD08126.1| type II secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29139923|gb|AAO71488.1| type II secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 412
Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats.
Identities = 82/421 (19%), Positives = 160/421 (38%), Gaps = 21/421 (4%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I L P+ K A ++ + + ++ + ++ P
Sbjct: 1 MKRWIAIILIVLMPAA---QAGKAAKVTLVVDDVPVVQVLQALA-EQERQNLVVSPDVSG 56
Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+ + A V + + L + G + + Q + +D L
Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ + + +I ++ + + + + T N+ A + +K
Sbjct: 110 RLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
++ +++ QV L I + L+++G + ++ ++ +
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228
Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V G ++ + L ALE+ + +A P L A Q AS G + Y+ S
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
+GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408
Query: 419 V 419
V
Sbjct: 409 V 409
>gi|325294586|ref|YP_004281100.1| general secretion pathway protein D [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065034|gb|ADY73041.1| general secretion pathway protein D [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 630
Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats.
Identities = 84/448 (18%), Positives = 167/448 (37%), Gaps = 47/448 (10%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
V ++ ++ +NA V+ + + + + + L++ + +++ + + D
Sbjct: 145 LLSPVGRVSIVRNSNAIVVTDKEKNVHRIETVVRRLDRA---PMKMEIASFEIKNGKVED 201
Query: 79 V-----VVHSPRTMYLFGKN---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
V V+ + K G+ D + + ++ I ++ L +
Sbjct: 202 VEKVLKVLLDKTFAFDIAKTVPLPGRDYYH-FASDKRTNTLFVVGTQKVIREVQSLLPKL 260
Query: 131 IADSNIRVEMVSDTVV-----------------LHGMVRTIQDSQRAVELSETFLSQSGR 173
D + VE + ++ G R V++ S S
Sbjct: 261 --DKPLNVEDGNIHIIRLNYAFAEDMAKVLSSLFKGTSRKSMGLTGEVKIVADKSSNSLI 318
Query: 174 NQYANS---SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGP 226
+ S K+V++ ++I QV ++V I E+ D L Q+G + G
Sbjct: 319 VLSSPSDFKVVKEVIDSVDIKRP-QVFVEVQIVEMSMDKLLQLGVEWKFLSRGNLVPFGG 377
Query: 227 SKSFAADFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
S + S + D +L+A + + +A P + + +
Sbjct: 378 SLYGNLPLQAGYPSASPGLLLGIAKWRGDTPDIGLLLNAYAKEGGVNVIATPQILTLDNE 437
Query: 284 SASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
A Y T +++ S D G+ L TP + + G + L+I +V +
Sbjct: 438 EAEINISKVIPYSTGVKYDANNNPVISYDYKDVGITLKITPHITASGEVRLKIYEKVEDV 497
Query: 340 VIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
V NA P R+A TTV++ G T+V+ GL+K E +P+L IP+LG LF
Sbjct: 498 VGYANADQTAPITSKREAKTTVDVQDGQTLVIGGLIKSKKLTTIEKVPVLGNIPVLGNLF 557
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRD 426
+ + E+T + + TP +V+ +
Sbjct: 558 KKTGHQIEKTNLLVFITPRVVRSREEEN 585
>gi|213585294|ref|ZP_03367120.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 412
Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats.
Identities = 81/421 (19%), Positives = 159/421 (37%), Gaps = 21/421 (4%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I L P+ K A ++ + + ++ + ++ P
Sbjct: 1 MKRWIAIILIVLMPAA---QAGKAAKVTLVVDDVPVVQVLQALA-EQERQNLVVSPDVSG 56
Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+ + A V + + L + G + + Q + +D L
Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ + + +I ++ + + + + T N+ A + +K
Sbjct: 110 RLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
++ +++ QV L I + L+++G + ++ ++ +
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228
Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V G ++ + L ALE+ + +A P L A Q AS G + Y+ S
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
+G TSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T
Sbjct: 289 ESGTTSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408
Query: 419 V 419
V
Sbjct: 409 V 409
>gi|205354888|ref|YP_002228689.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205274669|emb|CAR39723.1| type II secretion system protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326630034|gb|EGE36377.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 412
Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats.
Identities = 83/421 (19%), Positives = 161/421 (38%), Gaps = 21/421 (4%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I L + P+ K A ++ + + ++ + ++ P
Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56
Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+ + A V + + L + G + + Q + +D L
Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ + + +I ++ + + + + T N+ A + +K
Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRMLLRDNRAALAELEK 169
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
++ +++ QV L I + L+++G + ++ ++ S
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAA 228
Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V G ++ + L ALE+ + +A P L A Q AS G + Y+ S
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
+GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGGIPWLGQLFRHDGKEDERRELVVFITPRL 408
Query: 419 V 419
V
Sbjct: 409 V 409
>gi|113461255|ref|YP_719324.1| competence protein E [Haemophilus somnus 129PT]
gi|112823298|gb|ABI25387.1| competence protein E [Haemophilus somnus 129PT]
Length = 377
Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats.
Identities = 56/254 (22%), Positives = 100/254 (39%), Gaps = 17/254 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I ++ ++ +F
Sbjct: 122 EQIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGSLAANGFQHLTEQLNVNFATAA 181
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + QSAS G + Y
Sbjct: 182 TPAGSIALQIAKINDRLLDLELTALERENNVEIIASPRLLTTNKQSASIKQGTEIPYVIT 241
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKA 356
+ V + + L TP + I L + + P + G M S ++
Sbjct: 242 GKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNSPGSRITYGQNEMVSIDKQEI 301
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + + +PLL IPIL LF ++ E+ I TP
Sbjct: 302 NTQVFARDGETIVLGGVFHDTITKGVDKVPLLGDIPILKRLFSRESERHQKRELVIFVTP 361
Query: 417 FLVKPVAMRDLSRP 430
+++ ++ +P
Sbjct: 362 RIIRSEQPNEIIKP 375
>gi|207723669|ref|YP_002254067.1| type II secretory pathway, gspd-related protein [Ralstonia
solanacearum MolK2]
gi|206588873|emb|CAQ35835.1| type II secretory pathway, gspd-related protein [Ralstonia
solanacearum MolK2]
Length = 778
Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats.
Identities = 77/434 (17%), Positives = 152/434 (35%), Gaps = 67/434 (15%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
++ S+ + P + A + + + + +++ ++ + + + VS+ T D
Sbjct: 185 ASASIMRKPVSLQFRDANVRMVFEALSRTTGLNVIFDRDVRTDLK---TTIFVSNATLED 241
Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
V V + T++++ + + L D H+E
Sbjct: 242 TVDMILMQSQLAKKVMNANTVFIYPATAAK-----QQEYQDLKVRTFQLSNTDAKHIEAL 296
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L+ + I + ++TV + +I+ ++R ++ L +
Sbjct: 297 LKSLLKIKEIVTDERANTVSIRATPESIRVAERM--IAAQDLPEPE-------------- 340
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
V L+V + EV RD L +G P+
Sbjct: 341 ---------VMLEVEVLEVSRDRLTDLGIDW--------PNSFTLGTPSSAATWGDLHHL 383
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
L + T LA P + + + A G + + SS
Sbjct: 384 TINRLTASGLSATANFKLTDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSG 443
Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYR 352
S+ D G+ L P V +G+++ EVS +++ +
Sbjct: 444 PVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNAQTGLSSLAYQIG 503
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R A T++ L G T VL GL++D+ + +P L ++P+LG LF N + ++TEI +
Sbjct: 504 TRNASTSLRLKDGETQVLGGLIQDEDRDAANKVPGLGQLPVLGRLFSNHNGDHKKTEIVL 563
Query: 413 AATPFLVKPVAMRD 426
TP +V+P D
Sbjct: 564 QITPHIVRPQPAAD 577
>gi|68249035|ref|YP_248147.1| competence protein E [Haemophilus influenzae 86-028NP]
gi|148825285|ref|YP_001290038.1| competence protein E [Haemophilus influenzae PittEE]
gi|59939227|gb|AAX12385.1| ComE [Haemophilus influenzae]
gi|68057234|gb|AAX87487.1| competence protein E [Haemophilus influenzae 86-028NP]
gi|148715445|gb|ABQ97655.1| competence protein E [Haemophilus influenzae PittEE]
Length = 445
Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|291280100|ref|YP_003496935.1| hypothetical protein DEFDS_1724 [Deferribacter desulfuricans SSM1]
gi|290754802|dbj|BAI81179.1| hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 796
Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats.
Identities = 71/290 (24%), Positives = 118/290 (40%), Gaps = 28/290 (9%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
V + + S +F+ + A +K ++ L+ QVT++ I EV
Sbjct: 514 SVLSPRGKMEINAKSNSFV--ITDIKSAIEQAKDLLEELDKRTP-QVTIEARIVEVFDTN 570
Query: 210 LKQIGFQHSITGSSSGPSKSFAA--------------------DFGGKFVSEGGDFSVKG 249
+G Q + + S +F + + S+
Sbjct: 571 NVNLGIQWGGNYNVNSTSVNFPNTITVNGNTGSTGIGGAGYVVNLPVGAPAGALALSLGN 630
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
+ F+ + L ALE +RT++ P +T + Q A SGG + + T
Sbjct: 631 LSRTFNLDIALSALESQNKVRTISSPRITTLDNQEAEIKSGGTAIIVP---TGDNTETEE 687
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
D G+ L P + S I L I+ E S G + + +KA T V L +G T V
Sbjct: 688 VDVGIKLKIKPHITSNNMIYLDIEVEKSSL--GAVTANTATTEEKKAKTQVLLANGETTV 745
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ G+ +D+ ++ +G+P LSKIPILGALFR + E+ + TP +V
Sbjct: 746 IGGIYEDEKSEVNQGVPFLSKIPILGALFRAKNNTVTKRELLVFITPKIV 795
>gi|325529100|gb|EGD06093.1| putative secretion type II protein [Burkholderia sp. TJI49]
Length = 608
Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats.
Identities = 71/437 (16%), Positives = 155/437 (35%), Gaps = 74/437 (16%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK-- 76
++ S+ + P + A + + + + +++ ++ + + + V + +
Sbjct: 158 ASSSIMRTPVSLQFRDANVRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVQNASLQD 214
Query: 77 ----------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI----ERDIAH 122
D + T++++ + L + D
Sbjct: 215 TVDMILLQNQLDKKQMNANTLFIYPATP---------AKELEYQELKVRTFQLSNVDAKQ 265
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
++ L+ + ++ ++TV + G I+ ++ ++ L +
Sbjct: 266 VQSLLKSLLKVKEAVIDEHANTVTIRGTPDMIKVAEEM--IAAQDLPEPE---------- 313
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
V L+V + EV D + Q+G + + S PS +
Sbjct: 314 -------------VMLEVEVLEVSHDRMSQLGINWPNSFTVSTPSSADTWGVLHHLPINA 360
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ S F T LA P + A + + A G + + SS+
Sbjct: 361 LNVSGLSATADFKL--------TDTDANLLASPRIRARNKEKARIMIGDKVPVISSSSTP 412
Query: 303 G------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MP 349
+ D G+ L P V G +G+++ EVS +++G+
Sbjct: 413 STSGPSFTQMIQYLDVGIKLEVEPQVYRDGDVGIKLNLEVSNITNTISSGNSQGLSSLAY 472
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
R A T++ L G T ++ GL+ D+ ++ +P L ++P+LG LF + + ++TE
Sbjct: 473 QIGTRSASTSLRLRDGETQIMGGLISDEDRRNANKVPGLGQLPVLGRLFSDHGGDHKKTE 532
Query: 410 IFIAATPFLVKPVAMRD 426
I + TP +V+P D
Sbjct: 533 IVLQITPHIVRPQVAAD 549
>gi|238754119|ref|ZP_04615477.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473]
gi|238707615|gb|EEP99974.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473]
Length = 422
Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats.
Identities = 63/288 (21%), Positives = 109/288 (37%), Gaps = 25/288 (8%)
Query: 157 SQRAVELSETFLSQSGRNQYANSS--SKKVMNLLNIAGE------------------DQV 196
A E++ G + K N L I QV
Sbjct: 133 HAEAEEIAANLNVNHGGLLSPQGRVFADKRTNRLLIRDTAESIAALKAWLSELDSPLQQV 192
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---DR 253
L I + + L ++G + I SG S +F + + +
Sbjct: 193 QLAAHIVTISSESLHELGVRWGIPARDSGGSALRINNFNVGLPIQNSAITAGFNIARISG 252
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+ L ALE+ + +A P LT Q+AS G Y S G T+V +
Sbjct: 253 QLLDLELSALEQENQVEIIASPRLTTSHQQTASIKQGTDIPYSVSSGKNGGTTVEFKEAV 312
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLA 371
+ + TP +L G+I L+++ + P + + + + ++ T + + G TIVL
Sbjct: 313 LGMEVTPRILGAGKITLKLKISQNMPGMAIKRGENESLAIDKQEIKTQITVNDGETIVLG 372
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G+ + + +P+LS IP+LG LF+ + + E+ I TP L+
Sbjct: 373 GIFQQKNSRGANKVPVLSDIPLLGHLFKQTVNAKSRRELVIFITPRLI 420
>gi|52426025|ref|YP_089162.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
gi|52308077|gb|AAU38577.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
Length = 478
Score = 193 bits (489), Expect = 8e-47, Method: Composition-based stats.
Identities = 79/423 (18%), Positives = 155/423 (36%), Gaps = 46/423 (10%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
P VA L + A + I D +S+ L K + + V ++
Sbjct: 59 APLVATLQQLALEQNANLVIDDE---LEGTLSLKLEK---VNLERLFHSVA----KLKNL 108
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT---LRRFIADSNI 136
+H + +Y F KN N+I ++ N + +L T L A +
Sbjct: 109 SLHKDKDIYYFTKN----NLIEPSSIAGELKNTENFTALSEPNLVSTTVKLHFAKASEVM 164
Query: 137 RVEMVSDTVVLH--GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
+ +L G V + S + + + + + K ++ L+ +
Sbjct: 165 KSLTSGTGSLLSPVGSVSFDERSNQLL---------IQDERRSLQNIKNIIAQLDKPI-E 214
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKFV 239
Q+ ++ I + + LK++G + + + ++ +F
Sbjct: 215 QIAIEARIVTMNDESLKELGVRWGLLEGVNSAHRIAGSLEANGFADIGQNLNVNFPTSAT 274
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
G + + L ALE+ ++ +A P L + +SAS G + Y V+
Sbjct: 275 PAGSVALQVAKIHGRLLDLELTALEQENNVKIIASPRLLTTNKKSASIKQGTEIPYVAVN 334
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKAD 357
V + + L TP + I L + + P + G++ S ++ +
Sbjct: 335 RKNDTEHVEFREAVLGLEVTPHISKDNSILLDLIVSQNSPGANIVYGNGNLISIDKQEIN 394
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T V G TIVL G+ D I + ++ +P+L IP++ LF ++ E+ I TP
Sbjct: 395 TQVFAKDGETIVLGGVFNDTITKSEDKVPILGDIPLIKHLFSKESEKHQKRELVIFVTPH 454
Query: 418 LVK 420
++K
Sbjct: 455 ILK 457
>gi|170717282|ref|YP_001784397.1| type IV pilus secretin PilQ [Haemophilus somnus 2336]
gi|168825411|gb|ACA30782.1| type IV pilus secretin PilQ [Haemophilus somnus 2336]
Length = 377
Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats.
Identities = 56/254 (22%), Positives = 100/254 (39%), Gaps = 17/254 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I ++ ++ +F
Sbjct: 122 EQIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGNLAANGFQHLTEQLNVNFATTA 181
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + QSAS G + Y
Sbjct: 182 TPAGSIALQIAKINDRLLDLELTALERENNVEIIASPRLLTTNKQSASIKQGTEIPYVIT 241
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKA 356
+ V + + L TP + I L + + P + G M S ++
Sbjct: 242 GKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNSPGSRITYGQNEMVSIDKQEI 301
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + + +PLL IPIL LF ++ E+ I TP
Sbjct: 302 NTQVFAQDGETIVLGGVFHDTITKGVDKVPLLGDIPILKRLFSRESERHQKRELVIFVTP 361
Query: 417 FLVKPVAMRDLSRP 430
+++ ++ +P
Sbjct: 362 RIIRSEQPNEIIKP 375
>gi|299066099|emb|CBJ37280.1| putative type II secretory pathway, gspd-related protein [Ralstonia
solanacearum CMR15]
Length = 792
Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats.
Identities = 78/434 (17%), Positives = 150/434 (34%), Gaps = 67/434 (15%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
S S+ + P + A + + + + +++ ++ + + + VS+ D
Sbjct: 185 SAASIMRKPVSLQFRDANVRMVFEALSRTTGLNVIFDRDVRTDLK---TTIFVSNAALDD 241
Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
V V + T++++ + + L D H++
Sbjct: 242 TVDMILLQSQLAKKVLNANTVFIYPATPAK-----QQEYQDLKVRTFQLSNTDAKHIDTL 296
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L+ + I + ++TV + TI+ ++R ++ L +
Sbjct: 297 LKNLLKIKEIVTDERANTVSIRATPETIRVAERM--IAAQDLPEPE-------------- 340
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
V L+V + EV RD L +G P+
Sbjct: 341 ---------VMLEVEVLEVSRDRLTDLGIDW--------PNSFSLGTPSSAATWGALHHL 383
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
L + T LA P + + + A G + + SS
Sbjct: 384 TVNQLTASGLSATANFKLTDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSG 443
Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYR 352
S+ D G+ L P V +G+++ EVS +++ +
Sbjct: 444 PVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNSQTGLSSLAYQIG 503
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R A TT+ L G T +L GL++D+ + IP L ++P+LG LF N + ++TEI +
Sbjct: 504 TRNASTTLRLKDGETQILGGLIQDEDRDAANKIPGLGQLPVLGRLFSNHNGDHKKTEIVL 563
Query: 413 AATPFLVKPVAMRD 426
TP +V+P D
Sbjct: 564 QITPHIVRPQLAAD 577
>gi|319775638|ref|YP_004138126.1| competence protein E [Haemophilus influenzae F3047]
gi|317450229|emb|CBY86445.1| competence protein E [Haemophilus influenzae F3047]
Length = 445
Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|301169135|emb|CBW28732.1| predicted fimbrial transporter [Haemophilus influenzae 10810]
Length = 445
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IPI+ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPIIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|170721354|ref|YP_001749042.1| general secretion pathway protein D [Pseudomonas putida W619]
gi|169759357|gb|ACA72673.1| general secretion pathway protein D [Pseudomonas putida W619]
Length = 745
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 122/337 (36%), Gaps = 14/337 (4%)
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
++ + G Q + + + S G V++++
Sbjct: 382 TTSLTSLNGTGSQSGQGLSGMGMNTQASIREAPSEDDYEDTGQPEASSAESADGSVKSLE 441
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
+S R + + + L+ + QV ++ I EV+ +G
Sbjct: 442 ESVRITAQKSSNQLLVRTRPAQWKEIESAIKRLD-SPPLQVQIETRILEVKLTGDLDLGV 500
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD------RFSFETVLHALERATAI 269
Q + + S + A+ G + G G + + L ALE
Sbjct: 501 QWYLGRLAGNSSSTTVANESGSQGALGAGGVALGSASMFYSFVSSNLQVALRALETRGLT 560
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLS 324
+ L+ P+L ++ Q A G S T +SV GV+L P +
Sbjct: 561 QVLSAPSLVVLNNQQAQIQVGDNIPISQTTVNTSDSDTTLSSVEYVQTGVILDVVPRINP 620
Query: 325 PGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
G + + IQ +VS+ P R T V + SG T++L GL+K D Q
Sbjct: 621 GGLVYMDIQQQVSDADDSAVTTTQPNPRISSRAVSTQVAVQSGQTVLLGGLIKQDNGQSD 680
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P LS IP LG LF ++ +R+ TE+ + TP +V
Sbjct: 681 TRVPGLSSIPGLGWLFGSTSKSRDRTELIVLITPRVV 717
>gi|227822850|ref|YP_002826822.1| general secretion pathway protein D, GspD [Sinorhizobium fredii
NGR234]
gi|227341851|gb|ACP26069.1| general secretion pathway protein D, GspD [Sinorhizobium fredii
NGR234]
Length = 692
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 75/366 (20%), Positives = 139/366 (37%), Gaps = 32/366 (8%)
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
+++ G+ G V + ++ D++ E A E ++ + +
Sbjct: 334 QSVLATGQAGGGTVV------RQSVVAPDLVAETVAAGGEGAPMEMPPEAAVEAASAPVS 387
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
V + ++ + + ++++ L++ QV L+ IAE
Sbjct: 388 SVPSVVADIENNALLISTTAREY-----------QRIEQILRQLDV-LPTQVFLEAVIAE 435
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
V + + G + +S S A G + F+ + L AL
Sbjct: 436 VSLNDELKFGLRWYFEHNSDAFGLSDLAS--GAVAATFPGFNWTHLAGDAQI--ALQALS 491
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLH 317
T ++ ++ P L I+ Q A G Q T + + SV D G++L
Sbjct: 492 SVTNVKVISSPNLMVINNQQAKLQVGDQVPTVTQTSTSTSSADAAIVNSVELKDTGIILA 551
Query: 318 FTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
TP + S GR+ L IQ EVS V + D P+ + RK T V + G ++ L GL+++
Sbjct: 552 VTPRINSSGRVMLDIQQEVSNVVETTTSGIDSPTIQQRKISTRVVVNDGESLALGGLIQE 611
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
++ +P+L IP+ G F++ TE+ I P +V+ V D +
Sbjct: 612 KKSLGQKKMPVLGDIPLFGNAFKSKTDGINRTELIIFIRPRIVRDVQEARQV--TDEFRQ 669
Query: 437 EDDAKA 442
+ D
Sbjct: 670 QFDFDR 675
>gi|229846521|ref|ZP_04466629.1| competence protein E [Haemophilus influenzae 7P49H1]
gi|229810614|gb|EEP46332.1| competence protein E [Haemophilus influenzae 7P49H1]
Length = 445
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|145640400|ref|ZP_01795984.1| competence protein E [Haemophilus influenzae R3021]
gi|145274986|gb|EDK14848.1| competence protein E [Haemophilus influenzae 22.4-21]
Length = 445
Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|329122312|ref|ZP_08250900.1| competence protein E [Haemophilus aegyptius ATCC 11116]
gi|327473873|gb|EGF19290.1| competence protein E [Haemophilus aegyptius ATCC 11116]
Length = 445
Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V + S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEGVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|145630388|ref|ZP_01786169.1| competence protein E [Haemophilus influenzae R3021]
gi|144984123|gb|EDJ91560.1| competence protein E [Haemophilus influenzae R3021]
Length = 447
Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|260582299|ref|ZP_05850092.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
NT127]
gi|260094667|gb|EEW78562.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
NT127]
Length = 447
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 17/251 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKPVAMRDL 427
++K D+
Sbjct: 426 HILKAGETLDV 436
>gi|145628805|ref|ZP_01784605.1| competence protein E [Haemophilus influenzae 22.1-21]
gi|145638655|ref|ZP_01794264.1| competence protein E [Haemophilus influenzae PittII]
gi|144979275|gb|EDJ88961.1| competence protein E [Haemophilus influenzae 22.1-21]
gi|145272250|gb|EDK12158.1| competence protein E [Haemophilus influenzae PittII]
gi|309750149|gb|ADO80133.1| Outer membrane secretin ComE [Haemophilus influenzae R2866]
Length = 445
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|295096434|emb|CBK85524.1| general secretion pathway protein D [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 638
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 59/265 (22%), Positives = 105/265 (39%), Gaps = 18/265 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFV 239
+KV++ L+I QV ++ IAEV+ +G Q + G G + + +
Sbjct: 331 EKVIDKLDIRRP-QVLVEAIIAEVQDGNGLDLGVQWTSKHGGVQFGATGLPISQIKNGTM 389
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ F ++ AL L+ P++ + + ASF G + S
Sbjct: 390 KGASFTGLATGFFNGDFGALVTALSTDGKNDILSTPSVVTLDNKEASFNVGQDVPVLSGS 449
Query: 300 SS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353
+ SV G L P + I L+I+ EVS P++
Sbjct: 450 QTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDNSATEDSSLGPTFNT 509
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R + V + SG T+VL GL+++ +Q +PLL IP++G LFR + + + + +
Sbjct: 510 RTINNEVMVHSGQTVVLGGLMENVTKQSVSKVPLLGDIPLVGQLFRYTSQDTSKRNLMVF 569
Query: 414 ATPFLVKPVAMRDLSRPDDHYSVED 438
+++ DD+YS
Sbjct: 570 IHTTVLRD---------DDNYSAAS 585
>gi|94313628|ref|YP_586837.1| putative secretion type II protein [Cupriavidus metallidurans CH34]
gi|93357480|gb|ABF11568.1| Putative secretion type II protein; gspD(secretin)-like protein
[Cupriavidus metallidurans CH34]
Length = 734
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 71/429 (16%), Positives = 156/429 (36%), Gaps = 67/429 (15%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
+ S+ + P + A I + + + +++ ++ + + + V++ D
Sbjct: 170 AAGSIMRTPVTLQFRDANIRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNAAIED 226
Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
V V + T++++ + + + L D ++
Sbjct: 227 AVDLILLQSQLDKKVLNANTLFIYPATPAK-----QQEYQELKVRTFQLSNVDSKQVQSL 281
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L+ + + V+ ++TV + G TI+ +++ ++ L +
Sbjct: 282 LKSLLKIKEVVVDERANTVTIRGTPDTIRVAEQM--IAAQDLPEPE-------------- 325
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
V L+V + EV R+ L +G + + + P+ + + + S
Sbjct: 326 ---------VMLEVQVLEVSRERLTDLGIAWPNSFTMATPASATTWGVLHHLTANELEVS 376
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
F T LA P + + + A G + + SS+
Sbjct: 377 PLSATANFKL--------TDTDANLLASPRIRTRNKEKARILIGDKVPVISSSSTPSTSG 428
Query: 304 ---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYR 352
++ D G+ L P V +G+++ EVS + +G+
Sbjct: 429 PSFTQTIQYLDVGIKLEVEPQVYRDNDVGIKLALEVSNITKTIQSGNAQTGLSSLAYQIG 488
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R A T++ L G T +L GL+ D + + +P L ++P++G LF + + +TEI +
Sbjct: 489 TRSASTSLRLRDGETQILGGLISDQDRTSADKVPGLGQLPVVGRLFSDHNGDHVKTEIVL 548
Query: 413 AATPFLVKP 421
TP +V+P
Sbjct: 549 QITPHIVRP 557
>gi|145634568|ref|ZP_01790277.1| competence protein E [Haemophilus influenzae PittAA]
gi|229844405|ref|ZP_04464545.1| competence protein E [Haemophilus influenzae 6P18H1]
gi|145268113|gb|EDK08108.1| competence protein E [Haemophilus influenzae PittAA]
gi|229812654|gb|EEP48343.1| competence protein E [Haemophilus influenzae 6P18H1]
Length = 445
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLAGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|16272383|ref|NP_438596.1| competence protein E [Haemophilus influenzae Rd KW20]
gi|260580502|ref|ZP_05848330.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
RdAW]
gi|1169008|sp|P31772|COME_HAEIN RecName: Full=Competence protein E; AltName: Full=DNA
transformation protein ComE; Flags: Precursor
gi|1573410|gb|AAC22094.1| competence protein E (comE) [Haemophilus influenzae Rd KW20]
gi|260092844|gb|EEW76779.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
RdAW]
Length = 445
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|254283571|ref|ZP_04958539.1| general secretion pathway protein D [gamma proteobacterium NOR51-B]
gi|219679774|gb|EED36123.1| general secretion pathway protein D [gamma proteobacterium NOR51-B]
Length = 682
Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats.
Identities = 88/477 (18%), Positives = 160/477 (33%), Gaps = 61/477 (12%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
L+ + L P A + +NA +I+ IG+ ++I ++ +
Sbjct: 147 RLENVSAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDIRSNIGRIREIIDRMDSSAVRST 206
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
V V++ + G ++ ++ D L I
Sbjct: 207 EVVRLKYGVAEDIVQMLRTLETDEGEAGGAGEEVT-LVADKRTNSVVVTADELNSGRIKQ 265
Query: 123 LEMTLRRFIADSN----IRVEMVSDTVV---LHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
L L + S I +E + V L +++ I + + S
Sbjct: 266 LITYLDTPLEQSGNVKVIYLEYANAAEVAEVLTRVMQNITRLDDNGQRERSAGGNSTIEA 325
Query: 176 YANSSS-------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
+++ + V+ L+I QV ++ I E+ +++G Q
Sbjct: 326 DEGTNALIITADADEMAALEAVIARLDIR-RAQVLVEAIIVEMEVVEGQELGLQWLFAND 384
Query: 223 SSGPSKSFAADF------------------------------GGKFVSEGGDFSVKGVLD 252
S + + G G V D
Sbjct: 385 SGFYGSNISTSSAQRARNAAIADAILPGDGDSSGDIGITDLAGALSQVPGATLGWGAVDD 444
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------G 303
+ +L+ALE L+ P+L + + A T G Q + T S +
Sbjct: 445 DLTMTVILNALETQGNANILSTPSLLTLDNEEAYITVGQQVPFVTGSFTNTGSGDSARNP 504
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
++ + G+ L TP V + L I EVS + RK +T V
Sbjct: 505 FQTIERQNVGITLKVTPQVNEGDSVVLDIVQEVSSISQQLLVASDVITNERKIETKVLAS 564
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G +VL GL+KD++Q ++G+P+LS IP+LG LFRN ++ + + P +V+
Sbjct: 565 DGDIVVLGGLVKDEVQDSQQGVPILSSIPLLGRLFRNDVVEVSKSNLLVFIRPTIVR 621
>gi|309972408|gb|ADO95609.1| Outer membrane secretin ComE [Haemophilus influenzae R2846]
Length = 445
Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|297180471|gb|ADI16685.1| type II secretory pathway, component puld [uncultured gamma
proteobacterium HF0010_05D02]
Length = 666
Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats.
Identities = 87/476 (18%), Positives = 167/476 (35%), Gaps = 59/476 (12%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
L + L P A + +NA +I+ I + KI +++ + +
Sbjct: 133 RLDNVSAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDIRANIDRIAKIIDRMDQSAVKKT 192
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
V V+ + +A+++ ++ D + I
Sbjct: 193 EVVKLRYGVATDVVEMLKTLEKSRAGEGADANDEASLVADKRTNSVIVTADEVSIERIKG 252
Query: 123 LEMTLRRFIADS-NIRV------EMVSDTVVLHGMVRTIQDSQ-------RAVELSETFL 168
L L + S N+RV + VL +++ + RA +++ +
Sbjct: 253 LVDYLDIPLEQSGNVRVMYLEYADATEVAEVLTRVMQNLARLDDESSGRTRAANAAKSTI 312
Query: 169 SQS--------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ ++ + V+ L+I QV ++ I E+ +++G Q
Sbjct: 313 EADEGTNSLIITADTDEMAALEAVIARLDIR-RAQVLVEAIIVEIDVTEGRELGLQWLFA 371
Query: 221 GSSSGPSKSFAADFGGKFVS---------------------------EGGDFSVKGVLDR 253
S + + G + G F V +
Sbjct: 372 NDSGLYGSNISPARQGSNAAIAQAILPEDAASTEIGVRDLAGALSQVPGTTFGWGVVDEN 431
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------GA 304
+ T+L+ LE+ L+ P+L + + A T G Q + T S +
Sbjct: 432 LTMTTILNTLEKQGNTNILSTPSLLTLDNEEAFITVGQQVPFVTGSYTNTGAANGVANPF 491
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
++ + GV L TP + + + I EVS + RK +T V
Sbjct: 492 QTIQRENVGVTLQVTPQINEGDSVVMDIVQEVSSISQQALSASDVITNERKIETKVLAKD 551
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G +VL GL+KDDIQ ++G+PLLS IP++G LFRN + ++ + + +++
Sbjct: 552 GDIVVLGGLVKDDIQDSQQGVPLLSGIPVVGRLFRNDVVSVTKSNLLVFIRSTIIR 607
>gi|145636296|ref|ZP_01791965.1| competence protein E [Haemophilus influenzae PittHH]
gi|145270461|gb|EDK10395.1| competence protein E [Haemophilus influenzae PittHH]
Length = 445
Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|148263871|ref|YP_001230577.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4]
gi|146397371|gb|ABQ26004.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4]
Length = 944
Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats.
Identities = 68/434 (15%), Positives = 154/434 (35%), Gaps = 53/434 (12%)
Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV-PVDVQDVLVSDPTKADVVVHSP 84
+ + A + + K + + + L+ D++ + A+V +
Sbjct: 523 MAAPAKEPEAFAELPSSAVSKQVTKKVYTGRKVTLEFSDADIRKIF---QLIAEVSNLN- 578
Query: 85 RTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
+L +V G ++ L+ Q L++ + + E + + + ++ + +
Sbjct: 579 ---FLIADDVSGTISIKLVNVPWDQALDVILDTKGLGMQREGNIVQIKPKAKMQSQADEE 635
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM------NLLNIA------ 191
R ++ +++ ++ S + ++ N + +
Sbjct: 636 IAAKKARERAMELRTEVFDVNYAAVADIVTQFNTLKSERGIITSDVRTNRVIVKDIATAI 695
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------SSSG 225
E QV ++ I E + ++ +G Q + + G
Sbjct: 696 EDMKSLLKNLDSPEKQVMIEARIVEAQTSFVRDLGVQWGLHYVDGSASVAGISRFDTGFG 755
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ G S + + L A A I+ ++ P + ++ + A
Sbjct: 756 GVVTPPPTSGTSGPGAAAGMSFGKLASNIQIDMRLSAAVTAEQIKIISSPRVVTLNNKPA 815
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
+ G Y+T S+ T + + L TP + S G IG++I+
Sbjct: 816 KISQGASIPYQTTSAEG--TKTEFVEAALTLEVTPHITSDGSIGMKIKAS----NNSAGT 869
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
G P ++A T + + +G T V+ G+ D +G+P L IP+LG LF+++ N+
Sbjct: 870 GSPPPINKKEATTELLVKNGETTVIGGIYVDSETDNDKGVPFLQDIPLLGWLFKSNTKNK 929
Query: 406 EETEIFIAATPFLV 419
+ E+ I TP ++
Sbjct: 930 SKNELLIFITPKII 943
>gi|90407251|ref|ZP_01215438.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3]
gi|90311674|gb|EAS39772.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3]
Length = 739
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 65/292 (22%), Positives = 113/292 (38%), Gaps = 18/292 (6%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
++ G V + D T + + K ++ +L+I QV ++ +
Sbjct: 445 AILSSGDVSLLSDRGSVNVDKRTNMLLLKDTARVIKAVKNMIKVLDIPVR-QVVIEARMV 503
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKS--------------FAADFGGKFVSEGGDFSVKG 249
V + +++G + + + S S + + F +
Sbjct: 504 TVNDSVGEELGIRWGNSNVNGDLSTSGSLDGLTNGSLDERLNVNLPVVGAAGRIAFRIAK 563
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
+ + L ALE+ +A P +T Q+A G + Y +SS GAT+V+
Sbjct: 564 LASGKILDLELSALEKENKAEIIASPRITTADQQTAYIEQGTEIPYVESASS-GATAVSF 622
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ L TP + +I L + VI G S ++ T V + +G T
Sbjct: 623 KKAVLSLQVTPQITPDNKIILDLVITQDSKGDVIPTGLGQAVSINTQEIKTQVLVGNGET 682
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IVL G+ + I + +P L IP LGALFR + ++E+ I TP LV
Sbjct: 683 IVLGGIYQQRIIDTVQKVPFLGDIPFLGALFRTTIKENRKSELLIFVTPRLV 734
>gi|78222195|ref|YP_383942.1| type II and III secretion system secretin [Geobacter
metallireducens GS-15]
gi|78193450|gb|ABB31217.1| type II and III secretion system protein:NolW-like
protein:Secretin/TonB, short-like protein [Geobacter
metallireducens GS-15]
Length = 870
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 73/447 (16%), Positives = 156/447 (34%), Gaps = 55/447 (12%)
Query: 17 FSSNPSVAKLPPIKEANAAVINISDVE----IGKGKKISIGLNKVIILQV-PVDVQDVLV 71
++ P ++ E+ + + + + + + L+ D++ +
Sbjct: 434 ITAAPVASEPAKQTESERSAPVVVKSQAVSPTAAADGKKVYTGRRVTLEFSDADIRKIF- 492
Query: 72 SDPTKADVVVHSPRTMYLFGKNV-GQANVIL----IG---------------HDGKQMLN 111
A+V + ++ G +V G ++ L DG +
Sbjct: 493 --QLIAEVSNLN----FIVGDDVTGTISLKLVNVPWDQALDVILENKGLGMQRDGNIVQI 546
Query: 112 LDILIERDIAHLEMTLRR------FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+A E ++ + V + V+ + + +
Sbjct: 547 RPKSKIMTLADEEQKAKKSREQGMELKTEVFDVNYAAVGDVVTQFNTLKSERGMISQDAR 606
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---- 221
T + + ++ L+I E QV ++ I E + +++G Q I
Sbjct: 607 TNRVIVKDIAPVVAEMRNLLKSLDIP-EKQVMIEARIVEASSTVTQELGIQWGIHARDAN 665
Query: 222 ---------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
G A G + ++ S + L AL I+ +
Sbjct: 666 TIGVTNADVGFGGILTGLAPTAGTFGPGAAAGITFGKLISGGSLDLKLSALASGERIKII 725
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ P + ++ ++A + G Y TVS+ T + + L TP + S G I ++I
Sbjct: 726 SSPKVVTLNNKAAKISQGQSIPYSTVSAEG--TKTEFVEAALTLEVTPHIASDGSISMKI 783
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ + +P+ ++A T + + +G T V+ G+ D+ Q +G+P IP
Sbjct: 784 KATNNSAAPAPTGA-VPAINKKEATTELLVRNGETTVIGGIYVDNDSQADQGVPFFKDIP 842
Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
+LG LF++S + + E+ I TP +V
Sbjct: 843 LLGWLFKSSNTQKIKNELLIFITPKIV 869
>gi|319898044|ref|YP_004136241.1| competence protein e [Haemophilus influenzae F3031]
gi|317433550|emb|CBY81934.1| competence protein E [Haemophilus influenzae F3031]
Length = 445
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGIRWGIFNPTENARRVAGSLAGNSFENIADNLNVNFATTA 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|148262762|ref|YP_001229468.1| general secretion pathway protein D [Geobacter uraniireducens Rf4]
gi|146396262|gb|ABQ24895.1| general secretion pathway protein D [Geobacter uraniireducens Rf4]
Length = 641
Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats.
Identities = 69/321 (21%), Positives = 114/321 (35%), Gaps = 37/321 (11%)
Query: 137 RVEMVSDTVVLHGMV--RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---- 190
+ VL G+V + + + + + K N L I
Sbjct: 278 NADATEVAKVLDGVVKGSSAAAAPSQPGAANAPQQSPFEGGKISITPDKATNSLVIMASP 337
Query: 191 --------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--- 233
QV ++ IAEV LK +G Q + G +S + + A
Sbjct: 338 TDYQNLIQVIQKLDKRRRQVFVEAVIAEVSLSKLKDLGVQWGVLGGASNGTATAAGLYDP 397
Query: 234 --------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ G +F VL AL+ A+ L+ PT+ + A
Sbjct: 398 QDTFTTLLTALANLKSAGITIPDLTGTALNFSAVLRALDSLGAVNVLSTPTIMTSDNKEA 457
Query: 286 SFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
G + + +++ S+ D G+ L TP + + L I E+S
Sbjct: 458 EIFVGENVPFKGNVTISNTTTPSFQSIERKDTGITLKITPQISEGEYVKLDIYQEISAIS 517
Query: 341 IGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ R A T+V + T+V+ GL++D Q+ IPLL IP LG LF+
Sbjct: 518 NTTVSGASDLITTKRSAKTSVAVKDKDTMVIGGLIQDREQETVNKIPLLGDIPFLGWLFK 577
Query: 400 NSRFNREETEIFIAATPFLVK 420
R++T + I TP +V+
Sbjct: 578 FKNTTRQKTNLLIVLTPRIVR 598
>gi|292670351|ref|ZP_06603777.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292648082|gb|EFF66054.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 426
Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats.
Identities = 88/436 (20%), Positives = 168/436 (38%), Gaps = 31/436 (7%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
T ++ + L S + A + + + + + + + ++ +V V
Sbjct: 2 TIAALVCMMLLSVPAAAAPVTINVTGGD--VRTVLLAVARMGNLPLIVDD----RVDGTV 55
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD----GKQMLNLDILIERDIAH 122
L + + +V + R +++ ++ G + G D +++ +
Sbjct: 56 TAHLTGEAEEVLHLVAAARGIHI-ERHGGV--FLAFGADARGENRRVHTYAVRFADPEEL 112
Query: 123 LEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
+ V +D G QR + + T + +
Sbjct: 113 AHAANLSLTGEGKRAIVSKNNDERENEGSDSDSDAQQRVLVDTATNTLLFYGTESEALAV 172
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAA 232
+++++ L+ QV+L+ + + ++ KQ+G S G +
Sbjct: 173 REIISALD-REPQQVSLEARVVAISKEAAKQLGVDWSWSSLPQYPRVQYDRGGSWRVGER 231
Query: 233 DFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+ G S G + F + + AL + LA P +T I G+ A
Sbjct: 232 NAGTGGTSAPGIIRFGRGPEGLPYEFYYSAAIRALITEGKAKMLARPNVTTIQGREALIN 291
Query: 289 SGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
G + V++S T+ + + G++L +TP V + G I R+ TEVS PV V
Sbjct: 292 IGAEVPVPRVATSNNVTTTGIEYREAGIILRYTPRVTADGNIVARVHTEVSTPVY-VEDL 350
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
++ R ADTTV L +G T+V+ GL+ D + IP L +P+LGA FR+ R +R
Sbjct: 351 KAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRSLSKIPFLGDLPVLGAFFRSVRTSRT 410
Query: 407 ETEIFIAATPFLVKPV 422
ETE+ I T ++
Sbjct: 411 ETELMIFLTAHVLDET 426
>gi|251788920|ref|YP_003003641.1| general secretion pathway protein D [Dickeya zeae Ech1591]
gi|247537541|gb|ACT06162.1| general secretion pathway protein D [Dickeya zeae Ech1591]
Length = 716
Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats.
Identities = 61/312 (19%), Positives = 116/312 (37%), Gaps = 37/312 (11%)
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
T+V+ G T++ + L T R+ ++V+N L+I QV +
Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 402
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------- 241
+ IAE++ +G Q + + + A +
Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMIQFPNSNASNNIPISTAMIGTDQFRSDGTLTTAY 462
Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--- 294
G + R ++ +L AL LA P++ + A+F G +
Sbjct: 463 ANALGSFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLT 522
Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---M 348
S S +V G+ L P + + L+I+ EVS G ++ +
Sbjct: 523 GQQTTMGSGSNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNSSTNSSLG 582
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
++ R + V + +G T+V+ GLL + +PLL IP LG+LFR+ + +
Sbjct: 583 VTFNTRTVNNAVMVTNGETVVVGGLLDKSTIETNNKVPLLGDIPWLGSLFRSKSQSMSKR 642
Query: 409 EIFIAATPFLVK 420
+ + P +++
Sbjct: 643 NLMLFLRPTIIR 654
>gi|148997|gb|AAA25012.1| A mini-Tn10kan insertion in ORF E causes a deficiency in
transformation. ORF E is 24% identical to the products
of the filamentous phage gene IV and of pulD, a gene in
the pulC operon of Klebsiella; ORF; putative
[Haemophilus influenzae]
Length = 441
Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|294012239|ref|YP_003545699.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
gi|292675569|dbj|BAI97087.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
Length = 543
Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats.
Identities = 87/257 (33%), Positives = 123/257 (47%), Gaps = 10/257 (3%)
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
+I+ SS A + G L + L ALER ++TLAEPTL
Sbjct: 260 NISNSSVTGRGGNGALDLLLPTTAFGALGWVTNLGGLRISSALDALERKGLVKTLAEPTL 319
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
A+SG++ASF +GG+ + G +V +GV L FTPTVLS G I L
Sbjct: 320 VALSGETASFLAGGEFPIPVAQNGNGTGSGSNSITVEFKPFGVSLGFTPTVLSDGIINLV 379
Query: 332 IQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
++ EVS +N +P R+A T VEL G + +AGLL++D Q IP+
Sbjct: 380 VEPEVSSIDPSASVQINGLVIPGLLTRRAKTVVELRDGQSFAIAGLLRNDFQDTIRQIPV 439
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
L +PI+GALFR+S F ++ETE+ + TP LVKP+ D+ P D + F R
Sbjct: 440 LGSLPIIGALFRSSGFQKQETELVMIVTPRLVKPMRADDVRLPTDRVGNPHELDLFLMGR 499
Query: 448 VNKIYGPKEASEVEGQN 464
+K G +
Sbjct: 500 TDKAVGINPLNPDAMPP 516
Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 12/244 (4%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
M L + + LP +A A +N+ ++ + LNK +L V LV
Sbjct: 1 MLASLLALGAGASLLPMQAQAQVASLNV--SNANHAGQLDVPLNKSQVLTVDRPFAKALV 58
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
+ ADV+ + R++Y+ GK +G ++ L + +D+ + D+ L+ L I
Sbjct: 59 GNAEIADVLPMTNRSVYVLGKKMGTTSLTLYDSRNMMIAVVDVAVGPDVVTLKRQLSELI 118
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
I + +D ++L G V + +AV ++ T+ S+K++N+L++
Sbjct: 119 PGEQIGARISNDALILTGTVSSAAAVDQAVRIASTYAGG----------SEKIVNMLSVG 168
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
QV L+V +EV R K++G H+ +S + G S+
Sbjct: 169 ASQQVMLEVRFSEVNRQAAKELGLNHTFLNNSGKFVGGMGENGLAGVPVTGNTSSMGSGT 228
Query: 252 DRFS 255
S
Sbjct: 229 SNSS 232
>gi|78484595|ref|YP_390520.1| type II and III secretion system protein [Thiomicrospira crunogena
XCL-2]
gi|78362881|gb|ABB40846.1| Type II secretion pathway protein D [Thiomicrospira crunogena
XCL-2]
Length = 703
Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats.
Identities = 74/399 (18%), Positives = 141/399 (35%), Gaps = 43/399 (10%)
Query: 55 NKVIILQVPVDVQDVLVSDPT---------KADVVVHSPRTMYLFGKNVGQANVILIGHD 105
NK + V++S AD+ V P G+ VI + +
Sbjct: 216 NKQFNVSFDERSNRVILSGDQDTRREMRALIADLDVSVPSE--------GRVQVIYLHYA 267
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
L + L ++ S + + V + R +E
Sbjct: 268 KAAELVPVLQKIATNRSLLSSVSSDAKTSEATIPDATGNGVQVNQLDDKTLKSRISIEAE 327
Query: 166 TFLSQS--GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
++ S K V+ L+I QV ++ + EV ++G + G +
Sbjct: 328 ERMNAIIISAPPGVVSVLKTVIKQLDIR-RAQVLIEAILVEVTETKQAELGVEWGAAGPN 386
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLD-------------RFSFETVLHALERATAIR 270
+F+ + G + + + ++ AL +
Sbjct: 387 GVGLINFSGTIPTIIGNAGNPAAQANAIGTGVNAAFGEVSADGTGWGALIRALNSDSEAN 446
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------TGATSVTTHDYGVVLHFTPT 321
L+ PTL + + A G + ++T S + ++ + G+ L TP
Sbjct: 447 ILSTPTLLTLDNEEAEIVVGKEVPFQTGSYTSTGTSSTPTNPFNTIERKNVGLSLKVTPQ 506
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ + L I E+S+ + +A D+ R+ T V + G IVL GLL + ++
Sbjct: 507 INEGDEVFLEINQEISDVIPKGDAVDV-QTSKRQIKTRVIVGDGNVIVLGGLLTEKETEV 565
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++ +P L IP LGALFR++ RE+ + + P +V+
Sbjct: 566 EKKVPGLGDIPGLGALFRSTSNEREKVNLMVFLRPVIVR 604
>gi|294055809|ref|YP_003549467.1| type II and III secretion system protein [Coraliomargarita
akajimensis DSM 45221]
gi|293615142|gb|ADE55297.1| type II and III secretion system protein [Coraliomargarita
akajimensis DSM 45221]
Length = 595
Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats.
Identities = 81/499 (16%), Positives = 169/499 (33%), Gaps = 82/499 (16%)
Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
+ + + S++ + ++ ++ V+ + G + ++ + I + P + V
Sbjct: 66 AVAGVSVESADAEIPEVTVALPEDSTVVLDLPGQTGSVEAGTVEEEETISVDFPDEDVRV 125
Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
++ + A++ + + + VG+ ++ L +++ + + + + +
Sbjct: 126 ILFN--VAELFDLN---LVVPEALVGRTSIKLHNVTWREVFEVVLEPLGYAYIEDRNIIK 180
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
+ ++I E V+ TV+ RA ++ + + NLL
Sbjct: 181 VKSVADIAAEPVTTTVI-------AIKHARAADIMGSIAPLVDGAAGGKMVADSRKNLLV 233
Query: 190 I------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
I +QV ++ + EV + L+ +G S + F
Sbjct: 234 ITERPSQIQKIRDLVDEVDRATEQVMIETKLVEVFDEDLENLGVNWSSLNGYGLSAGPFT 293
Query: 232 A---------------------DFGGKFVSEGGDFSVKGV-------LDRFSFETVLHAL 263
+ +FV+ S+ + F +L AL
Sbjct: 294 RQWDRSREKSTGTTTEFSPATDNQPAQFVTGNLVDSLASTSRLDTAVFNADQFNVILSAL 353
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHF 318
E + + PT+ ++ + A F G + + + + A V GV L
Sbjct: 354 ETLNDTKLVTNPTVVVMNKRPAKFEVGRDYPIREITFNQETGTYEAGGVEETFIGVELEV 413
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKD 376
TP VL G I L + +S V + P R DT V + G T+ L GL
Sbjct: 414 TPEVL-GGNIHLDVDPTISALDGTVESFGAIDPIVARRSVDTEVIIKDGYTLALGGLADT 472
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT----------------PFLVK 420
+P+L IP LG LF + + + + I T P +++
Sbjct: 473 QEVNSGTKVPILGDIPGLGRLFSSDSDSLGKRNLIIFITAKTLNPEGSDYRDVIDPRMIE 532
Query: 421 PVAMRDLSRPDDHYSVEDD 439
+ + D P H+ +D
Sbjct: 533 EMGITDYEVPGYHFREGND 551
>gi|310765643|gb|ADP10593.1| Protein transport protein hofQ precursor [Erwinia sp. Ejp617]
Length = 414
Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats.
Identities = 72/430 (16%), Positives = 161/430 (37%), Gaps = 35/430 (8%)
Query: 8 FFTMMSIFLFSSNPSVA-KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
++ +++ +P A + P + A + + +++++ + + + + +
Sbjct: 1 MLRILGLWMALISPLAAVQPPLTLAFDDAPVAQVLQALADYQQLNLMVAPGVEGHLSLRL 60
Query: 67 QDV--------LVSDPTKADVVVHSPRTMYLFGK---NVGQANVILIGHDGKQMLNLDIL 115
+DV ++ + + +F + Q + + +QML L
Sbjct: 61 KDVPWRQALQLVIKTGKL--TMEQQGNVLMVFPEGWQQEQQRKAAIRREEQEQMLPLFDR 118
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
I + ++ + R+ ++ L ++ L++T
Sbjct: 119 ILTLVHADAASVNTSLQHERARLMSARGSITLDSRTNSLLLRDTEKALAQT--------- 169
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF- 234
+ ++ L++ +Q+ L I + + L+++G ++G + +
Sbjct: 170 ------EHWVHQLDVPL-EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLR 222
Query: 235 --GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
G LD + L ALE +A P L Q+AS G +
Sbjct: 223 VDLATGRPAGVVGFTLAKLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTE 282
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPS 350
Y+ + ++G+T++ + + + TP V + GRI L I V + ++ +
Sbjct: 283 IPYEVSTGNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLT 342
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++ DT V L G T+ L G+ + +P L IP+LG LFR+ ++ E+
Sbjct: 343 IDKQEIDTQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRREL 402
Query: 411 FIAATPFLVK 420
I TP L++
Sbjct: 403 VIFITPRLIR 412
>gi|301155450|emb|CBW14916.1| predicted fimbrial transporter [Haemophilus parainfluenzae T3T1]
Length = 460
Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats.
Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 17/260 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I S + +F
Sbjct: 195 EQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVSGSLDANGFSNIGDNLNVNFATTV 254
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 255 TPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVT 314
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
+ SV + + L TP + I L + + P V ++ S ++
Sbjct: 315 NGKNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEI 374
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + + +PLL IP + LF ++ E+ I TP
Sbjct: 375 NTQVFAKDGETIVLGGVFHDTITKGIDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTP 434
Query: 417 FLVKPVAMRDLSRPDDHYSV 436
++K ++++ + H+
Sbjct: 435 HILKQGERMEMAKKEKHFKQ 454
>gi|312961914|ref|ZP_07776411.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
gi|311283724|gb|EFQ62308.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
Length = 740
Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats.
Identities = 64/317 (20%), Positives = 116/317 (36%), Gaps = 36/317 (11%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------------------Q 195
+ A + + + +++K N L + Q
Sbjct: 416 EAEQDNAEQGTRDDAPAKSLDAGTRITAQKSSNQLLVRTRPVQWKEIESAIKRLDNPPLQ 475
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------SVK 248
V ++ I EV+ +G Q + + + + A+ G + G S+
Sbjct: 476 VQIETRILEVKLTGELDLGVQWYLGRLAGNSTSTTVANASGSQGALGRGGAGLGAADSLF 535
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-- 306
+ + LHALE + L+ P+L ++ Q A G + +TG +
Sbjct: 536 YSFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTSDTT 595
Query: 307 ---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTT 359
V GV+L P + G + + IQ +VS+ + P R T
Sbjct: 596 LSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASTNGDTPANPRISTRSVSTQ 655
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V + SG T++L GL+K D +P L KIP L LF ++ +++ TE+ + TP ++
Sbjct: 656 VAVQSGQTVLLGGLIKQDNADTVSAVPYLGKIPGLRWLFGSTSKSKDRTELIVLITPRVI 715
Query: 420 KPVAMRDLSRPDDHYSV 436
+ + D Y
Sbjct: 716 --TSSSQARQVTDDYRQ 730
>gi|319789871|ref|YP_004151504.1| general secretion pathway protein D [Thermovibrio ammonificans
HB-1]
gi|317114373|gb|ADU96863.1| general secretion pathway protein D [Thermovibrio ammonificans
HB-1]
Length = 638
Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats.
Identities = 71/383 (18%), Positives = 129/383 (33%), Gaps = 45/383 (11%)
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-------------------L 115
A R Y F + + ++G + L + L
Sbjct: 222 DIAKTFPLPGREYYHFAVDGRTNTLYVVGTPKTIVRVLQLCEKLDRPIKVKEGDIHIIKL 281
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
+ L D L G V+ + D + +
Sbjct: 282 NYAFAEDMAKVLDSLFKD------TSQKKFGLSGPVKVVADKGSNSLIVLASPQDFAVVK 335
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFA 231
V+ +++ QV ++V I E+ D L Q+G + G S
Sbjct: 336 D-------VVKSIDVKRP-QVFVEVQIVEMSMDKLLQMGVEWKFLSRGNYVPFGGSLYGN 387
Query: 232 ADFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+ S + +L+A + + +A P + + + A
Sbjct: 388 LPLQPGYPSASPGLLLGIAKWRDGVPDIGLLLNAYAKEGGVNVIATPQILTLDNEEAEIN 447
Query: 289 SGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
Y T +++ S D G+VL TP + + G + L++ +V + V N
Sbjct: 448 ISKVIPYSTGVKYDTNNNPVISYDYKDVGIVLKITPHITASGEVRLKVYEKVEDVVGYAN 507
Query: 345 AG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
A P R+A TTV++ G T+V+ GL+K E +P+L IP++G LF+ +
Sbjct: 508 ADQTAPITSKREAKTTVDVHDGQTLVIGGLIKRKKLTTVEKVPVLGSIPVIGNLFKKTGH 567
Query: 404 NREETEIFIAATPFLVKPVAMRD 426
E+T + + TP +V+
Sbjct: 568 QIEKTNLLVFITPHIVRNTEEEQ 590
>gi|325576567|ref|ZP_08147285.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392]
gi|325161130|gb|EGC73245.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392]
Length = 460
Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats.
Identities = 57/260 (21%), Positives = 102/260 (39%), Gaps = 17/260 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I S S + +F
Sbjct: 195 EQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVGGSLDANGFSNISNNLNVNFATTV 254
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 255 TPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVT 314
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
+ SV + + L TP + I L + + P V ++ S ++
Sbjct: 315 NGKNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEI 374
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + + +PLL IP + LF ++ E+ I TP
Sbjct: 375 NTQVFAKDGETIVLGGVFHDTITKGVDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTP 434
Query: 417 FLVKPVAMRDLSRPDDHYSV 436
++K +++R + H+
Sbjct: 435 HILKQGERMEMARKEKHFKQ 454
>gi|229591502|ref|YP_002873621.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25]
gi|229363368|emb|CAY50509.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25]
Length = 740
Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats.
Identities = 64/316 (20%), Positives = 118/316 (37%), Gaps = 36/316 (11%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------------------QV 196
+ A + + + +++K N L + QV
Sbjct: 418 AEQDDAEQGATEDAPTKSLDAGTRITAQKSSNQLLVRTRPVQWKEIESAIKRLDNPPLQV 477
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------SVKG 249
++ I EV+ +G Q + + + + + G + GG S+
Sbjct: 478 QIETRILEVKLTGELDLGVQWYLGRLAGNSTSTTVGNTAGSQGALGGGGAGLGAADSLFY 537
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--- 306
+ + LHALE + L+ P+L ++ Q A G + +TG +
Sbjct: 538 SFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTSDTTL 597
Query: 307 --VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTV 360
V GV+L P + G + + IQ +VS+ + + P R T V
Sbjct: 598 SSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASSSNDTQNNPRISTRSVSTQV 657
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ SG T++L GL+K D + +P L +IP L LF N+ +++ TE+ + TP ++
Sbjct: 658 AVQSGQTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI- 716
Query: 421 PVAMRDLSRPDDHYSV 436
+ + D Y
Sbjct: 717 -TSSSQARQVTDDYRQ 731
>gi|330958220|gb|EGH58480.1| general secretion pathway protein D [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 773
Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats.
Identities = 65/305 (21%), Positives = 112/305 (36%), Gaps = 19/305 (6%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G +++ S R + + + L+ QV ++ I EV+
Sbjct: 456 TGNGKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVKL 514
Query: 208 DILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
+G Q S T + + G + S + +
Sbjct: 515 TGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSIGTGGAALAATDSFFYSFVSNNLQVA 574
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGV 314
L ALE + L+ P+L ++ Q A G + S+T +SV GV
Sbjct: 575 LRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTTVNTNASATTLSSVEYVQTGV 634
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLA 371
+L P + G + + IQ +VS+ N+ P R T V SG T++L
Sbjct: 635 ILDVVPRINPGGLVYMDIQQQVSDADNSANSTDLNGNPRISTRSVSTQVAAQSGQTVLLG 694
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL+K D + +P L +IP L LF N+ +++ TE+ + TP ++ + +
Sbjct: 695 GLIKQDNAESVSAVPYLGRIPGLKWLFGNTSKSKDRTELIVLITPRVI--TSSSQARQVT 752
Query: 432 DHYSV 436
D Y
Sbjct: 753 DDYRQ 757
>gi|222056148|ref|YP_002538510.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32]
gi|221565437|gb|ACM21409.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32]
Length = 911
Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats.
Identities = 69/405 (17%), Positives = 148/405 (36%), Gaps = 53/405 (13%)
Query: 55 NKVIILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNL 112
+ + L+ D++ + A+V + +L +V G ++ L+ Q L++
Sbjct: 519 GRKVTLEFSDADIRKIF---QLIAEVSNLN----FLIADDVTGTISIKLVNVPWDQALDV 571
Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
+ + E + + + ++ + + R ++ +++ ++
Sbjct: 572 ILDTKGLGMLKEGNIVQIKPKAKMQSQADEEMATKKARERGMELRTEIFDVNYAAVTDIA 631
Query: 173 RNQYANSSSKKVM------NLLNI------------------AGEDQVTLKVTIAEVRRD 208
S + ++ N + + E QV ++ I E
Sbjct: 632 TQFGTLKSDRGIISTDARTNRVIVKDITTAIEDMRMLLKSLDTPEKQVMIEARIVEASTS 691
Query: 209 ILKQIGFQHSITG--------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
++ +G Q I + G + A G S +
Sbjct: 692 FVRDLGVQWGIHYIDGSASVAGISRLDTGFGGQVAIAPTSGTSGPGAAVGMSFGKLASNI 751
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
+ L A A I+ ++ P + ++ + A + G Y+T S+ T + +
Sbjct: 752 QLDMRLSAAVTADQIKIMSTPRVVTLNNKPAKISQGASIPYQTTSAEG--TKTEFVEAAL 809
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
L TP + S G IG++I+ G P ++A T + + +G T V+ G+
Sbjct: 810 TLEVTPHITSDGSIGMKIKAS----NNSAGTGSPPPINKKEATTELLIKNGETTVIGGIY 865
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
D + +G+P L IP+LG LF+++ N+ + E+ I TP +V
Sbjct: 866 VDSDTESDKGVPFLQDIPLLGWLFKSNTKNKSKNELLIFITPKIV 910
>gi|87122896|ref|ZP_01078763.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121]
gi|86161822|gb|EAQ63120.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121]
Length = 390
Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats.
Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 5/227 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ + IA+V+ + QIG + + S + S S
Sbjct: 165 RQIEISARIAQVQNAVESQIGVEWQGQLAGDTLSTASG-LVDLATTSSTSGLSFAVAKSD 223
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
L LE ++EP + GQ A SG + Y+T S T V G
Sbjct: 224 DLLALNLSFLESNGLANIVSEPKIVTAEGQMAKIESGTEVPYQT--SDDEGTHVEFKQAG 281
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ L P V ++ L ++ + + +G +PS + +T V + + T+VL G+
Sbjct: 282 LTLEVIPFVKQGDKVQLSLK--IYQDAVGEMYNGVPSIETNRINTQVLVGNQETLVLGGI 339
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+D++ + +P +P +GALFR+ +E+ E+ + TP L++
Sbjct: 340 YRDEVWESTSKVPFFGDLPFVGALFRHQAQRQEKVELLVFITPKLLQ 386
>gi|330969406|gb|EGH69472.1| type II and III secretion system protein [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 325
Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats.
Identities = 76/283 (26%), Positives = 124/283 (43%), Gaps = 22/283 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVS 240
QV + EV R LK+ GSS+ +
Sbjct: 40 PSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPL 99
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+F++ +++A+E + TLA P+L A++GQSASF +GG+ +
Sbjct: 100 NNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNG 159
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKA 356
S+ ++GV L TPTV+ RI L++ EVSE I + +P+ +R+
Sbjct: 160 EGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRT 219
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
DT++ L G + V++GL+ + P L IPILGA FR+S+ R+E E+ + TP
Sbjct: 220 DTSIALADGESFVISGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTP 279
Query: 417 FLVKPVAMRD--LSRPDDHYS--VEDDAKAFFF--NRVNKIYG 453
LV+P+A S P + + +F ++ G
Sbjct: 280 HLVQPLAANARLPSLPGEGLRTYDPSFPRLYFLENGDFDRRDG 322
>gi|283480139|emb|CAY76055.1| Protein transport protein hofQ precursor [Erwinia pyrifoliae DSM
12163]
Length = 414
Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats.
Identities = 72/430 (16%), Positives = 161/430 (37%), Gaps = 35/430 (8%)
Query: 8 FFTMMSIFLFSSNPSVA-KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
++ +++ +P A + P + A + + +++++ + + + + +
Sbjct: 1 MLRILGLWMALISPLAAVQPPLTLAFDDAPVAQVLQALADYQQLNLMVAPGVEGHLSLRL 60
Query: 67 QDV--------LVSDPTKADVVVHSPRTMYLFGK---NVGQANVILIGHDGKQMLNLDIL 115
+DV ++ + + +F + Q + + +QML L
Sbjct: 61 KDVPWRQALQLVIKTGKL--TMEQQGNVLMVFPEGWQQEQQRKAAIRREEQEQMLPLFDR 118
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
I + ++ + R+ ++ L ++ L++T
Sbjct: 119 ILTLVHADAASVNTSLQRERARLMSARGSITLDSRTNSLLLRDTEKALAQT--------- 169
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF- 234
+ ++ L++ +Q+ L I + + L+++G ++G + +
Sbjct: 170 ------EHWVHQLDVPL-EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLR 222
Query: 235 --GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
G LD + L ALE +A P L Q+AS G +
Sbjct: 223 VDLATGRPAGVVGFTLAKLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTE 282
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPS 350
Y+ + ++G+T++ + + + TP V + GRI L I V + ++ +
Sbjct: 283 IPYEVSTGNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLT 342
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++ DT V L G T+ L G+ + +P L IP+LG LFR+ ++ E+
Sbjct: 343 IDKQEIDTQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRREL 402
Query: 411 FIAATPFLVK 420
I TP L++
Sbjct: 403 VIFITPRLIR 412
>gi|293416792|ref|ZP_06659429.1| transporter HofQ [Escherichia coli B185]
gi|291431368|gb|EFF04353.1| transporter HofQ [Escherichia coli B185]
Length = 412
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 85/425 (20%), Positives = 155/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L PSV P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPSVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + NI ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ +K + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEKWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|330862294|emb|CBX72455.1| hypothetical protein YEW_HH31870 [Yersinia enterocolitica W22703]
Length = 271
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 85/264 (32%), Positives = 139/264 (52%), Gaps = 20/264 (7%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
MN + + G +QV +K+TIAEV +D + IG S G+ SG + F + KF ++G
Sbjct: 1 MNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSGSFQFFKLNGSNKFNAKG-- 58
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++HA+ + R LAEP L+ +SG+SASF GG+ V+++ +
Sbjct: 59 -----------ISALVHAINDDSIARVLAEPNLSVLSGESASFLVGGELPL--VNTTANS 105
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVE 361
T +T +G+ L+ V + RI +++ EVS PS+R RKA TT+E
Sbjct: 106 TVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNIDGGDAYPSFRTRKAATTLE 165
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
L G + +L GL+ ++ + IP + IPILGA FRN+ + +TE+ + AT LV+P
Sbjct: 166 LGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRP 225
Query: 422 VAMRDLSRPDDHYSVEDDAKAFFF 445
V+ +++ P ++ + FF
Sbjct: 226 VSEKEVELP--NFMHTSTLERFFN 247
>gi|90406756|ref|ZP_01214949.1| putative type II secretory pathway, component EpsD [Psychromonas
sp. CNPT3]
gi|90312209|gb|EAS40301.1| putative type II secretory pathway, component EpsD [Psychromonas
sp. CNPT3]
Length = 658
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 107/259 (41%), Gaps = 22/259 (8%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKF 238
V+ L+I QV ++ I E+ + Q + + G + G +
Sbjct: 333 SSVIRKLDIR-RAQVLVEAIIVEISEGNGINLSVQFATSAGGSQFHGNGATTGDAINGAY 391
Query: 239 ----------VSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
VS GV+ ++ +L AL +T LA P++ + Q AS
Sbjct: 392 QIRHDGDLSDVSSAISKIAGGVVGYLGSNWGVMLQALSSSTGSNILATPSIMTLDNQEAS 451
Query: 287 FTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
F G + + + ++ + GV L+ TP + + L I+ EVS
Sbjct: 452 FLVGDEVPVLTGSTSSDDNDNPFQTIERKEIGVKLNVTPQINEGDSVQLVIEQEVSSIKD 511
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
N D+ + R TTV + SG TIV+ GL+ + + + + IPLL IP LG LF+++
Sbjct: 512 STNTVDV-VFSTRSVKTTVLVKSGQTIVIGGLIDEKVIESVDKIPLLGDIPWLGNLFKST 570
Query: 402 RFNREETEIFIAATPFLVK 420
R E+ + I +++
Sbjct: 571 RNTTEKRNLMIFLRATIIR 589
>gi|121533454|ref|ZP_01665282.1| type II and III secretion system protein [Thermosinus
carboxydivorans Nor1]
gi|121308013|gb|EAX48927.1| type II and III secretion system protein [Thermosinus
carboxydivorans Nor1]
Length = 414
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 83/407 (20%), Positives = 164/407 (40%), Gaps = 35/407 (8%)
Query: 21 PSVAKLPPIKEA-NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
P++A P + A + + ++SI + + ++ + ++++ + V
Sbjct: 36 PALAAGPMVNMNVTDAEVRDVLTALASVGRVSIVADDSVTGKITIQLRNI-PFETALDLV 94
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
T Y G + A+ + + + + ++ +L I D ++V+
Sbjct: 95 TKTKGLTYYKTGNVIVVASADKLSKGFGSVQIIKLK-YARADEVKKSLALVIPDERLKVD 153
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
++++V G + ++A+ L++ +QV+L+
Sbjct: 154 EATNSLVFSGSPAESEALRQALA------------------------ELDVP-YEQVSLE 188
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FS 255
+ + R+ K +GF +G + + G D F+
Sbjct: 189 AQVVAINRNAAKDLGFDWQWSGLPANTEFDSTSGTTKTTREYPGVIKFGKAYDGTPYEFT 248
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYG 313
F+ L AL + + LA+P +T I+G+ A G + + G T+ + D G
Sbjct: 249 FQAKLSALITSGEAKLLAKPKITTINGKEAKILIGDRIPVLVERTENGKTTTTIEYIDAG 308
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ L +TP + + G I + TEVS P + V R+A T V + G T+V+ GL
Sbjct: 309 IKLTYTPRINADGYITAAVHTEVSTPTL-VPEMKAYRVTTREATTNVRMKDGDTMVIGGL 367
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ ++ K +PLLS +P+LG LF + + ETE+ I T +VK
Sbjct: 368 ISNEESGGKNRVPLLSDLPVLGKLFESVHKTKNETEVVIFLTARIVK 414
>gi|153871180|ref|ZP_02000417.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
PS]
gi|152072356|gb|EDN69585.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
PS]
Length = 442
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 62/314 (19%), Positives = 114/314 (36%), Gaps = 35/314 (11%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G + + T + + V+ L+I QV ++ IAE+
Sbjct: 92 KGKSPSPEIKTNIQADESTNSLVITATPKVQQNLQTVIRQLDIR-RAQVLVEAVIAEIST 150
Query: 208 DILKQIGFQHSITGS----------------------SSGPSKSFAADFGGKFVSEGGDF 245
D +++G Q + G+ S+G + + + G
Sbjct: 151 DTARELGVQWLLYGNKGTAPFGLSNFDNSGTRIADLASAGYLANNNSSTSLPNIGAGAFL 210
Query: 246 SVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302
+ + F +F +L AL T L+ P+L + Q A G + T +
Sbjct: 211 GLGRFNNSFLNFGVLLRALASDTNTNVLSTPSLLTLDNQEAEIVVGQNVPFVTGQYTNTG 270
Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
++ D G+ L P + + L I+ EVS A
Sbjct: 271 TSGGGGVTNPFQTIQREDIGIKLRVKPQINEGNAVKLEIEQEVSSLSRSSQATTDIVTNK 330
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R TTV + G +VL GL+ +D+QQ + +P L +PI+G LFR+ + + + +
Sbjct: 331 RTIKTTVIVEDGNMVVLGGLIDEDLQQTAQKVPGLGDLPIIGHLFRSRSTQKIKRNLMVF 390
Query: 414 ATPFLVKPVAMRDL 427
P +++ A ++
Sbjct: 391 LHPVIIRDAASENI 404
>gi|331685028|ref|ZP_08385614.1| protein transport protein HofQ [Escherichia coli H299]
gi|331077399|gb|EGI48611.1| protein transport protein HofQ [Escherichia coli H299]
Length = 412
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 83/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + NI ++ + + + T N+ A S
Sbjct: 106 AEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKAALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTALGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|218706981|ref|YP_002414500.1| outer membrane porin HofQ [Escherichia coli UMN026]
gi|293406969|ref|ZP_06650893.1| hofQ [Escherichia coli FVEC1412]
gi|298382711|ref|ZP_06992306.1| hofQ [Escherichia coli FVEC1302]
gi|218434078|emb|CAR14995.1| fimbrial transporter [Escherichia coli UMN026]
gi|291425780|gb|EFE98814.1| hofQ [Escherichia coli FVEC1412]
gi|298276547|gb|EFI18065.1| hofQ [Escherichia coli FVEC1302]
Length = 412
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 84/420 (20%), Positives = 158/420 (37%), Gaps = 19/420 (4%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ ++ + V +
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVRGTVSL 60
Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
+ DV VV S L + G + + D + ++
Sbjct: 61 HLTDVPWKQA--LQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQEAEQAR 110
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
+ + NI ++ + + + T N+ A S+ ++
Sbjct: 111 AQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKAALSALEQW 170
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
+ +++ QV L I + L+++G + ++ + G
Sbjct: 171 VAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATAT 229
Query: 245 FSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
V G ++ + L ALE+ + +A P L A Q AS G + Y+ S
Sbjct: 230 THVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGE 289
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T
Sbjct: 290 SGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQ 349
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV
Sbjct: 350 VEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409
>gi|94959236|gb|ABF47508.1| GspD [Leptospira biflexa serovar Patoc]
Length = 595
Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats.
Identities = 84/438 (19%), Positives = 147/438 (33%), Gaps = 52/438 (11%)
Query: 38 NISDVEIGKGKKIS--IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
+SD E+ K I+ + L +++ ++ V D ++ + T+ G
Sbjct: 139 PVSDSEVALNKTITQIVPLEFSNAIELEPILKRVTSPDTDI--IIPKNQNTLIFSGSTAD 196
Query: 96 QANVILI--------GHDGKQMLNLDILIERDIAHLEMTLRRF-----IADSNIRVEMVS 142
++ + G DI I + L + D+ +
Sbjct: 197 INKLLKLVDNLDVRADGPGSISSAGDIHIYTLEYNEAEKLAAILVKLDMPDAPVAPTTQG 256
Query: 143 ---------------DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
V QD +AV E+ KK++ +
Sbjct: 257 APGEAGADGKPAPPPQPTAQAPKVPGKQDKIKAVAHKESNSLIVTATPQEWEEIKKIIKI 316
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
L+ QV L+V I E+ L G + G + A GG G +V
Sbjct: 317 LD-TPRKQVLLEVLIVELSSTDLNDFGIDWRYQELAYGQFNTGLAAQGGVIDKNGRPTNV 375
Query: 248 KGVLD---------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ +L+A L+ P + + Q A G +T
Sbjct: 376 NTLSGFSLGFIRRGGQQIIGILNANSTNENFNVLSAPQILTLDNQEAEINVGQDVPVRTQ 435
Query: 299 SSSTG--------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDM 348
+ + G + G+ L FTP + RI L + E+ G
Sbjct: 436 NRNAGLGGDNAVTVANFEYRPTGIKLKFTPHINKNNRITLDLYQEIKNVAGISSEATGGN 495
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P++ R TT+ + + TIV+ GLL +D Q+ + IP+L +IP+LG LFR + +T
Sbjct: 496 PTFNKRDIKTTIVVDNIQTIVIGGLLSNDKQKKVQKIPILGEIPLLGTLFRRTTNQNRKT 555
Query: 409 EIFIAATPFLVKPVAMRD 426
+ + TP ++ D
Sbjct: 556 NLMVFLTPHILDDRDKSD 573
>gi|293412807|ref|ZP_06655475.1| conserved hypothetical protein [Escherichia coli B354]
gi|291468454|gb|EFF10947.1| conserved hypothetical protein [Escherichia coli B354]
Length = 412
Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats.
Identities = 80/425 (18%), Positives = 153/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGAQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +I ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLKYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L++ V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|148827632|ref|YP_001292385.1| competence protein E [Haemophilus influenzae PittGG]
gi|148718874|gb|ABR00002.1| competence protein E [Haemophilus influenzae PittGG]
Length = 445
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 366 NTQVFAKGGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425
Query: 417 FLVKP 421
++K
Sbjct: 426 HILKA 430
>gi|331659679|ref|ZP_08360617.1| protein transport protein HofQ [Escherichia coli TA206]
gi|331052894|gb|EGI24927.1| protein transport protein HofQ [Escherichia coli TA206]
Length = 412
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 81/425 (19%), Positives = 156/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNVARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + + NI ++ + + + T N+ A S
Sbjct: 106 VEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ ++ +++ QV L I + L+++G + ++ + G
Sbjct: 166 TLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L++ V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|183221062|ref|YP_001839058.1| general secretory pathway protein D [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911156|ref|YP_001962711.1| type II secretory pathway protein D [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167775832|gb|ABZ94133.1| Type II secretory pathway component, protein D [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167779484|gb|ABZ97782.1| General secretory pathway protein D [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 587
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 84/438 (19%), Positives = 147/438 (33%), Gaps = 52/438 (11%)
Query: 38 NISDVEIGKGKKIS--IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
+SD E+ K I+ + L +++ ++ V D ++ + T+ G
Sbjct: 131 PVSDSEVALNKTITQIVPLEFSNAIELEPILKRVTSPDTDI--IIPKNQNTLIFSGSTAD 188
Query: 96 QANVILI--------GHDGKQMLNLDILIERDIAHLEMTLRRF-----IADSNIRVEMVS 142
++ + G DI I + L + D+ +
Sbjct: 189 INKLLKLVDNLDVRADGPGSISSAGDIHIYTLEYNEAEKLAAILVKLDMPDAPVAPTTQG 248
Query: 143 ---------------DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
V QD +AV E+ KK++ +
Sbjct: 249 APGEAGADGKPAPPPQPTAQAPKVPGKQDKIKAVAHKESNSLIVTATPQEWEEIKKIIKI 308
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
L+ QV L+V I E+ L G + G + A GG G +V
Sbjct: 309 LD-TPRKQVLLEVLIVELSSTDLNDFGIDWRYQELAYGQFNTGLAAQGGVIDKNGRPTNV 367
Query: 248 KGVLD---------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ +L+A L+ P + + Q A G +T
Sbjct: 368 NTLSGFSLGFIRRGGQQIIGILNANSTNENFNVLSAPQILTLDNQEAEINVGQDVPVRTQ 427
Query: 299 SSSTG--------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDM 348
+ + G + G+ L FTP + RI L + E+ G
Sbjct: 428 NRNAGLGGDNAVTVANFEYRPTGIKLKFTPHINKNNRITLDLYQEIKNVAGISSEATGGN 487
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P++ R TT+ + + TIV+ GLL +D Q+ + IP+L +IP+LG LFR + +T
Sbjct: 488 PTFNKRDIKTTIVVDNIQTIVIGGLLSNDKQKKVQKIPILGEIPLLGTLFRRTTNQNRKT 547
Query: 409 EIFIAATPFLVKPVAMRD 426
+ + TP ++ D
Sbjct: 548 NLMVFLTPHILDDRDKSD 565
>gi|91200092|emb|CAJ73135.1| similar to general secretion pathway protein D [Candidatus Kuenenia
stuttgartiensis]
Length = 668
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 11/281 (3%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
R I +S + + +ET S K ++ ++ A QV ++V I EV R+
Sbjct: 374 RDIVESMKVLADTETNSVIMKTFPSDYKSIKAIIEAID-ATPQQVFIEVLIVEVTRNDTL 432
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
G + +GS+ + + SFE ++ L ++ +
Sbjct: 433 DYGTEWLWSGSNLQVYGVGDI----ARAAGNAAVQFTNTFAKGSFEILIDILATSSNAKI 488
Query: 272 LAEPTLTAISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
L+ P + Q AS G + + ++ V D G++L TP + G
Sbjct: 489 LSAPHILVRDEQPASIQVGEEVPILTSSGQQTGTTITFEQVQYRDTGIILTVTPHIAENG 548
Query: 327 RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
I L + EVS + + P++ R+ T++ + SG TI L G+++ ++ + I
Sbjct: 549 LITLEVNQEVSNAKLTDTGVEKSPTFSTRQVQTSLVIKSGHTIGLGGIIEQKNEKEVKKI 608
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
PLL IP LG LF+ + + TE+ + TP++ D
Sbjct: 609 PLLGDIPYLGNLFKATSLIDKRTELIMLITPYIANNAEDAD 649
>gi|270264426|ref|ZP_06192692.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13]
gi|270041562|gb|EFA14660.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13]
Length = 414
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 82/378 (21%), Positives = 142/378 (37%), Gaps = 36/378 (9%)
Query: 75 TKADVVVHSPRTMYLFGKNVG-QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
AD + + VG + L +Q L + + + + LE + +
Sbjct: 42 ALADYQQLN----VVTATGVGGNLTLRLDNVSWQQALAVILRMGKLSMTLEGNVMMVFPE 97
Query: 134 SNIRVEMVSDTVVLHG-----MVRTIQDSQRAVELSETFLSQSGR--NQYANSSSKKVMN 186
+ E + L V + AVE++E +Q ++ + + K N
Sbjct: 98 PD-EQEKQRQQLALAQKQPLESVTLTLNHADAVEIAENLNAQGSILLSERGSVVADKRTN 156
Query: 187 LLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
L I QV L I + + L+++G + +
Sbjct: 157 ALLIRDTAPIVALLTKRIAEMDAPLAQVQLAAHIVTINSESLRELGVRWGLAPDEGAAKP 216
Query: 229 SFAADFGGKFV---SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
DF S + + L ALE+ + +A P L Q+A
Sbjct: 217 LRMGDFNVSLPLERSAVSAGFHLARIGGRLLDLELMALEQENRVEIIASPRLLTAHQQTA 276
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
S G + Y+ S S+GATS+ + + + TP +L GRI L +Q + P ++
Sbjct: 277 SIKQGTEIPYEVKSGSSGATSMEFKEAVLGMEVTPKILPNGRITLTLQISQNMPGRSISR 336
Query: 345 -AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
G+ + ++ T V + G TIVL G+ + Q + +P L IP+LG+LF+ S
Sbjct: 337 ADGEALAIDKQEIKTQVTVKDGETIVLGGVFQRQSAQGADKVPGLGDIPLLGSLFKQSTK 396
Query: 404 NREETEIFIAATPFLVKP 421
+ E+ I TP L+K
Sbjct: 397 QHKRRELVIFITPTLIKA 414
>gi|15803894|ref|NP_289930.1| outer membrane porin HofQ [Escherichia coli O157:H7 EDL933]
gi|15833487|ref|NP_312260.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. Sakai]
gi|168747135|ref|ZP_02772157.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113]
gi|168753140|ref|ZP_02778147.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401]
gi|168759412|ref|ZP_02784419.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501]
gi|168765735|ref|ZP_02790742.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486]
gi|168772721|ref|ZP_02797728.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196]
gi|168779471|ref|ZP_02804478.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076]
gi|168785192|ref|ZP_02810199.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869]
gi|168797158|ref|ZP_02822165.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508]
gi|208807105|ref|ZP_03249442.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206]
gi|208814350|ref|ZP_03255679.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045]
gi|208821093|ref|ZP_03261413.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042]
gi|209400800|ref|YP_002272825.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115]
gi|217324393|ref|ZP_03440477.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588]
gi|254795305|ref|YP_003080142.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. TW14359]
gi|261224673|ref|ZP_05938954.1| predicted fimbrial transporter [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254432|ref|ZP_05946965.1| predicted fimbrial transporter [Escherichia coli O157:H7 str.
FRIK966]
gi|291284727|ref|YP_003501545.1| putative fimbrial transporter [Escherichia coli O55:H7 str. CB9615]
gi|12518014|gb|AAG58491.1|AE005561_4 putative transport portein [Escherichia coli O157:H7 str. EDL933]
gi|13363707|dbj|BAB37656.1| putative transport portein [Escherichia coli O157:H7 str. Sakai]
gi|187771720|gb|EDU35564.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196]
gi|188018292|gb|EDU56414.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113]
gi|189002616|gb|EDU71602.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076]
gi|189359008|gb|EDU77427.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401]
gi|189364497|gb|EDU82916.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486]
gi|189369829|gb|EDU88245.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501]
gi|189374266|gb|EDU92682.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869]
gi|189380180|gb|EDU98596.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508]
gi|208726906|gb|EDZ76507.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206]
gi|208735627|gb|EDZ84314.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045]
gi|208741216|gb|EDZ88898.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042]
gi|209162200|gb|ACI39633.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115]
gi|209756640|gb|ACI76632.1| putative transport protein [Escherichia coli]
gi|209756642|gb|ACI76633.1| putative transport protein [Escherichia coli]
gi|209756644|gb|ACI76634.1| putative transport protein [Escherichia coli]
gi|209756646|gb|ACI76635.1| putative transport protein [Escherichia coli]
gi|217320614|gb|EEC29038.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588]
gi|254594705|gb|ACT74066.1| predicted fimbrial transporter [Escherichia coli O157:H7 str.
TW14359]
gi|290764600|gb|ADD58561.1| predicted fimbrial transporter [Escherichia coli O55:H7 str.
CB9615]
gi|320639673|gb|EFX09267.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. G5101]
gi|320655674|gb|EFX23597.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320661459|gb|EFX28874.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. USDA 5905]
gi|320666481|gb|EFX33464.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. LSU-61]
Length = 412
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 83/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + NI ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|317049888|ref|YP_004117536.1| type IV pilus secretin PilQ [Pantoea sp. At-9b]
gi|316951505|gb|ADU70980.1| type IV pilus secretin PilQ [Pantoea sp. At-9b]
Length = 418
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 68/309 (22%), Positives = 127/309 (41%), Gaps = 30/309 (9%)
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
L+ ++ V+ +++++L R +Q++ R
Sbjct: 131 ARSLQAERSLMTPRGSVTVDSRTNSLLLRDTPRALQETVR-------------------- 170
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+N L++ +QV L I + + L+++G ++ +
Sbjct: 171 ----WLNALDLPL-EQVELSAHIVTISEEHLRELGVNWGLSPAEEVMQTLRNPQLAIPLA 225
Query: 240 SEGGDF---SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
F G + L ALE+ + I +A P L Q+A+ G + Y+
Sbjct: 226 VSNPAFRMGVTLGHIGGDLLNLELSALEQESQIDIIASPRLFTSHQQTATIKQGTEIPYE 285
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVR 354
S ++GAT++ + + + TP VL GRI L+++ + P +N G S +
Sbjct: 286 VKSGNSGATAIEFKEAVLGMEVTPVVLGNGRIQLKLRLSQNMPGRSINTGEHQTLSIDKQ 345
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ DT V L G T+ L G+ + Q + +P L K+P++G LFR+ ++ E+ I
Sbjct: 346 EIDTQVTLRDGETLALGGIFQQQRAQNENRVPWLGKLPVVGNLFRHQTDEHKKKELVIFI 405
Query: 415 TPFLVKPVA 423
TP LV+ A
Sbjct: 406 TPRLVREAA 414
>gi|297537658|ref|YP_003673427.1| type II and III secretion system protein [Methylotenera sp. 301]
gi|297257005|gb|ADI28850.1| type II and III secretion system protein [Methylotenera sp. 301]
Length = 838
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 76/479 (15%), Positives = 155/479 (32%), Gaps = 81/479 (16%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P + A + + + + I++ L++ + + + V D + D
Sbjct: 198 PISLQFRDANLKMVFEALSRTSGINVLLDRDVKNDLK---TTIFVKDASVEDTIGLILMQ 254
Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
V + T++++ + + ++ L+ D ++ ++ +
Sbjct: 255 NQLEEKVLNENTVFIYPSTPAKIK-----EYQELVIRTFHLVNADAKQMQTMIKTMLKTK 309
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
+I + ++++V+ AV+L+E ++ N
Sbjct: 310 DIFIHEKTNSLVMRDTP-------EAVQLAEKLVAAQDLNDPE----------------- 345
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------- 241
V L+V + EV + +IG Q S
Sbjct: 346 -VMLEVEVLEVLHSKMTEIGVQWPTQFGLSVTDAPSTPTTTVGLGGAIQTTTPPPVPLTL 404
Query: 242 -GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G + +L + LA P + + A G + T S
Sbjct: 405 EGLRNITGSNIKVTPLSLLLTMKKDVGDTNLLASPRIRVRQHEKAKIMIGDRVPVITNSV 464
Query: 301 STGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MP 349
+ +T SV D G+ L P + G + ++ EVS V
Sbjct: 465 TPVSTGTPVVTGSVQYLDVGLKLEVEPDIHIDGEVAIKTYLEVSNIANQVTNATSGTIAY 524
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
R A T + L G T VL GL+ D+ ++ +P L +PILG LF + ++ +TE
Sbjct: 525 QIGTRNASTVLRLKDGETQVLGGLISDEDRKSASKVPGLGDLPILGRLFSSHNNSKTKTE 584
Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
I + TP +++ + + D F+ ++ + + G G+
Sbjct: 585 IILFITPHIIRNI-----------HQPAADLSEFWSGTDATLHSKPMSLQPVGVAKTGS 632
>gi|302392509|ref|YP_003828329.1| type II and III secretion system protein [Acetohalobium arabaticum
DSM 5501]
gi|302204586|gb|ADL13264.1| type II and III secretion system protein [Acetohalobium arabaticum
DSM 5501]
Length = 428
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 9/229 (3%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV ++ I +V D LK +G S + + + GG ++
Sbjct: 181 KQVIIEARIEDVSYDKLKDLGINWSF---AKNRGDNKGEQISDTDIENGGSGILEIGDVS 237
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---SSSTGATSVTTH 310
++ ++ AL+ TLA P + I G+ A G + +T+++
Sbjct: 238 MNYTAIIRALKSTDDSTTLANPRIATIDGKEAVINMGQEVPILKSEKDDDGQTSTNISFR 297
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
D G VL TP ++ +I + I+ EVSE G P +K +T + + +G TIV+
Sbjct: 298 DVGTVLKITPR-INNNQIRMNIKPEVSEVDHWE--GSYPVINTKKVETNIIVKNGETIVI 354
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GL+ + +PL +PI G LF++ R +E+ E+ I TP ++
Sbjct: 355 GGLISEKEINQLSKVPLFGDVPIFGELFKSRRTTKEKRELVIFITPRII 403
>gi|114571311|ref|YP_757991.1| general secretion pathway protein D [Maricaulis maris MCS10]
gi|114341773|gb|ABI67053.1| general secretion pathway protein D [Maricaulis maris MCS10]
Length = 686
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 66/334 (19%), Positives = 126/334 (37%), Gaps = 20/334 (5%)
Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTVVLHGMVRTIQD 156
++ L ++ + L + A I D HG +
Sbjct: 326 SAGSERRLRYYVVRNTPASTLATQITAAFAGGQTGAGQLIEPRFQGDDA--HGEPSAPGE 383
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
Q + + L+ + + + +++ + +++ QV ++ TIAEVR +
Sbjct: 384 EQSRLTIIPDELNNALIIRATDQEYREILDLVQRMDV-MPPQVLIEATIAEVRLEDGLDF 442
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G + + S + S + L AL T + L+
Sbjct: 443 GVRWYFENAGSNETSSLQFSDSNTGSTAPVFPGFNYAFSGTDLTATLSALRSITDVTVLS 502
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPG 326
P++ + Q+A G + T ++++ S V + GV+L TP + + G
Sbjct: 503 APSIMVQNNQTAHLQVGDEVPIVTQTATSVTESNAPIVSSVELRETGVILQVTPRINASG 562
Query: 327 RIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+ L + EVS + D P+ + + +TV + S TI L GL+++ +
Sbjct: 563 MVVLEVNQEVSSVRPTTTSGIDSPTIQKLEFTSTVSVRSSNTIALGGLIRETTSDNESRT 622
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
PLL IP +G LFRN + +E+ I TP ++
Sbjct: 623 PLLGDIPGVGNLFRNRAMTSQRSELVIFLTPRII 656
>gi|260886221|ref|ZP_05897484.1| putative secretin and TonB short domain protein [Selenomonas
sputigena ATCC 35185]
gi|260863940|gb|EEX78440.1| putative secretin and TonB short domain protein [Selenomonas
sputigena ATCC 35185]
Length = 462
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 78/438 (17%), Positives = 174/438 (39%), Gaps = 23/438 (5%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+ F+ A P E A + I + + + L+ + ++
Sbjct: 18 ISPRVGAFFLAAWFAGALPAAASPLTLEVVDADVTALLTSIARLSGLDLILDDSVKGRIS 77
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI--LIERDIA 121
+ ++DV +P +A +++ + + + ++ G+ ++ + + + + D+
Sbjct: 78 LSLKDV---EPEEALMLISRAKGLAV--QHEGKVLLVRAAKEAAPFYRMHVLPVHHADLD 132
Query: 122 HLEMTLRRFIADSNIRV---EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
++ + ++ I + + + ++ + L G +
Sbjct: 133 TAFAAVKLSLGEAGISAIDENKKNGKEDISEQGLYRTGERLLIDRATNALLFYGTEEE-K 191
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ ++ V++ L++ +QV+L+ + + ++ K++G + P + + G
Sbjct: 192 ARAEAVLHSLDVPT-EQVSLEARVVALEKNAAKELGVDWDWSPLPIDPHGTSKSGAEGSR 250
Query: 239 VSEGGDFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
G+ R + + AL LA P +T + G+ A G
Sbjct: 251 RGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLARPNITTLQGREAVINIG 310
Query: 291 GQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
G ++ + + G++L +TP + G I R+ TEVS PV V+A
Sbjct: 311 GSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARVHTEVSSPVY-VDALKA 369
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
++ R ADTTV L G T+V+ GL+ + ++ +PLL IPILG F++ R + ++
Sbjct: 370 YKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIPILGTFFKSVRRTKTDS 429
Query: 409 EIFIAATPFLVKPVAMRD 426
EI I T +++ +
Sbjct: 430 EIMIFLTAHILRDTSPPA 447
>gi|26249985|ref|NP_756025.1| outer membrane porin HofQ [Escherichia coli CFT073]
gi|227883521|ref|ZP_04001326.1| competence protein E [Escherichia coli 83972]
gi|26110414|gb|AAN82599.1|AE016768_17 Protein transport protein hofQ precursor [Escherichia coli CFT073]
gi|227839400|gb|EEJ49866.1| competence protein E [Escherichia coli 83972]
Length = 412
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 82/425 (19%), Positives = 155/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + NI ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ ++ +++ QV L I + L+++G + ++ + G
Sbjct: 166 TLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|218702134|ref|YP_002409763.1| outer membrane porin HofQ [Escherichia coli IAI39]
gi|331664993|ref|ZP_08365894.1| protein transport protein HofQ [Escherichia coli TA143]
gi|218372120|emb|CAR19982.1| fimbrial transporter [Escherichia coli IAI39]
gi|331057503|gb|EGI29489.1| protein transport protein HofQ [Escherichia coli TA143]
Length = 412
Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats.
Identities = 82/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + NI ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L++ V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|293390985|ref|ZP_06635319.1| protein transport protein HofQ [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951519|gb|EFE01638.1| protein transport protein HofQ [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 469
Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 17/244 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I +F
Sbjct: 194 EQIAIEARIVTINDESLKELGVRWGIFNPTENAHRIGGSLAGNGFDNLVNQLNVNFPTTT 253
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y V
Sbjct: 254 TPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTELPYILV 313
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKA 356
+ +G+ SV + + L TP + +I L + + P V G ++ S ++
Sbjct: 314 NEKSGSQSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGSRVAYGLGEVVSIDKQEI 373
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + + +P+L IP + LF ++ E+ I TP
Sbjct: 374 NTQVFAKDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFSKESERHQKRELVIFVTP 433
Query: 417 FLVK 420
+++
Sbjct: 434 HILR 437
>gi|119943890|ref|YP_941570.1| general secretion pathway protein D [Psychromonas ingrahamii 37]
gi|119862494|gb|ABM01971.1| general secretion pathway protein D [Psychromonas ingrahamii 37]
Length = 662
Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats.
Identities = 65/287 (22%), Positives = 117/287 (40%), Gaps = 16/287 (5%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G + Q T SS ++ L+I QV ++ I EV
Sbjct: 309 AGQSGSAQGGLSIEAHEGTNAIVVSAQPALMSSLTSIIRQLDIR-RAQVLVEAIIVEVSE 367
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------RFSFET 258
+ Q T + S ++ D ++ + + ++
Sbjct: 368 GDGINLNVQWGTTNGGTQFQDSAVTTGNIVAGTQDNDAAISAIGNISGGIAGYIGSNWGV 427
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYG 313
VL AL AT LA P+LT + Q ASF G + + ++ ++ + G
Sbjct: 428 VLQALSSATTSNILATPSLTTLDNQEASFIVGDEVPVLTGSTSSATNDNPFQTIERKEIG 487
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ L TP + + + I+ EVS+ +A D+ + R TTV SG TIV+ GL
Sbjct: 488 IKLKVTPQINEGDSVQMIIEQEVSDIKNDTSAVDV-IFSTRSVKTTVLAKSGETIVIGGL 546
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + +++ + +PLL IP+LG LFR+++ + E+ + I +++
Sbjct: 547 IDETVKETVQKVPLLGDIPLLGFLFRSTQSSTEKRNLMIFLRATIIR 593
>gi|30065325|ref|NP_839496.1| outer membrane porin HofQ [Shigella flexneri 2a str. 2457T]
gi|56480325|ref|NP_709164.2| outer membrane porin HofQ [Shigella flexneri 2a str. 301]
gi|30043587|gb|AAP19307.1| putative transport portein [Shigella flexneri 2a str. 2457T]
gi|56383876|gb|AAN44871.2| putative transport portein [Shigella flexneri 2a str. 301]
gi|281602739|gb|ADA75723.1| putative transport protein [Shigella flexneri 2002017]
gi|313647313|gb|EFS11765.1| transport protein hofQ [Shigella flexneri 2a str. 2457T]
gi|332749511|gb|EGJ79928.1| transport protein hofQ [Shigella flexneri K-671]
Length = 412
Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats.
Identities = 80/425 (18%), Positives = 153/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +I ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L++ V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|157146468|ref|YP_001453787.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895]
gi|157083673|gb|ABV13351.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895]
Length = 640
Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats.
Identities = 60/297 (20%), Positives = 114/297 (38%), Gaps = 20/297 (6%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
++ + ++ + N +S +KV++ L+I QV ++ IAEV+
Sbjct: 299 KSPVAATDLNITADESTNSLVITAQPNVMNSLEKVIDKLDIRRP-QVLVEAIIAEVQDGA 357
Query: 210 LKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+G Q + G G + + + F ++ AL
Sbjct: 358 GTDLGVQWTSKHGGVQFGATGLPIGQVKNGTIKGVNFTGMATGFFNGDFGALMTALSTNG 417
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVL 323
L+ P++ + + ASF G + S +T +V G L P +
Sbjct: 418 KNDILSTPSVVTLDNKEASFNVGQDVPVLSGSQTTTGDNVFNTVERKTVGTKLKILPQIN 477
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
I ++I+ EVS P++ R + V + SG T+VL GL+++ +Q
Sbjct: 478 DGDMIHMKIEQEVSSVDASSTEDSSLGPTFNTRTINNEVMVHSGQTVVLGGLIENVTKQN 537
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
+PLL IP++G LFR + + + + + +++ DD+YS
Sbjct: 538 VSKVPLLGDIPLVGQLFRYTSQDTTKRNLMVFIHTTVLRD---------DDNYSAAS 585
>gi|110643624|ref|YP_671354.1| outer membrane porin HofQ [Escherichia coli 536]
gi|191171563|ref|ZP_03033111.1| protein transporter HofQ [Escherichia coli F11]
gi|215488672|ref|YP_002331103.1| outer membrane porin HofQ [Escherichia coli O127:H6 str. E2348/69]
gi|331649187|ref|ZP_08350273.1| protein transport protein HofQ [Escherichia coli M605]
gi|110345216|gb|ABG71453.1| protein transport protein HofQ precursor [Escherichia coli 536]
gi|190908190|gb|EDV67781.1| protein transporter HofQ [Escherichia coli F11]
gi|215266744|emb|CAS11183.1| predicted fimbrial transporter [Escherichia coli O127:H6 str.
E2348/69]
gi|281180422|dbj|BAI56752.1| putative transport protein [Escherichia coli SE15]
gi|331041685|gb|EGI13829.1| protein transport protein HofQ [Escherichia coli M605]
Length = 412
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 81/425 (19%), Positives = 155/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + NI ++ + + + T N+ A S
Sbjct: 106 AEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ ++ +++ QV L I + L+++G + ++ + G
Sbjct: 166 TLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L++ V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|205360346|ref|ZP_02682767.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|205350396|gb|EDZ37027.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 389
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 73/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
Q + +D L + + + +I ++ + + + +
Sbjct: 69 HSQAWQKEYSARQDAERLRLQANLPLENRSINLQYADAGELAKAGEKLLSAKGTIMVDKR 128
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A + +K ++ +++ QV L I + L+++G + ++ ++
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
S V G ++ + L ALE+ + +A P L A
Sbjct: 188 GSVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386
>gi|1170050|sp|P31780|GSPD_AERHY RecName: Full=General secretion pathway protein D; Flags: Precursor
gi|551421|emb|CAA47124.1| ExeD [Aeromonas hydrophila]
Length = 678
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 54/275 (19%), Positives = 106/275 (38%), Gaps = 24/275 (8%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ ++V+ L+I QV ++ I E+ +G Q + T +
Sbjct: 331 TAQPDVMAELEQVVAKLDIR-RAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTNAG 389
Query: 232 ADFGGKFVSEG----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
G ++ + + ++ ++ AL T L+ P
Sbjct: 390 PGIGSVAIAAKDYKDNGTTTGLAKLAENFNGMAAGFYQGNWAMLVTALSTNTKSDILSTP 449
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
++ + + ASF G + +T + + T +++ G L TP + + L
Sbjct: 450 SIVTMDNKEASFNVGQEVPVQTGTQNSTSGDTTFSTIERKTVGTKLVVTPQINEGDSVLL 509
Query: 331 RIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
I+ EVS D P++ R V + SG T+VL GL+ + ++ +PLL
Sbjct: 510 TIEQEVSSVGKQATGTDGLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEEVSKVPLL 569
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
IP+LG LFR++ N + + + P +++
Sbjct: 570 GDIPVLGYLFRSTSNNTSKRNLMVFIRPTILRDAN 604
>gi|296103142|ref|YP_003613288.1| general secretion pathway protein D [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295057601|gb|ADF62339.1| general secretion pathway protein D [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 642
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 54/247 (21%), Positives = 101/247 (40%), Gaps = 9/247 (3%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFV 239
+KV++ L+I QV ++ IAEV+ +G Q + G G + + +
Sbjct: 331 EKVIDKLDIRRP-QVLVEAIIAEVQDGNGMDLGVQWTGKHGGVQFGSTGLPISQVKNGTI 389
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ + +L AL + L+ P++ + + ASF G + S
Sbjct: 390 KGASFTGLATGFFNGDYGALLTALSTSGKNDILSTPSVVTLDNKEASFNVGQDVPVLSGS 449
Query: 300 SS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353
+ SV G L P + I L+I+ EVS P++
Sbjct: 450 QTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASATEDASLGPTFNT 509
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R + V + SG T+VL GL+++ +Q +PLL +P++G LFR + + + + +
Sbjct: 510 RTINNEVMVHSGQTVVLGGLMENVSKQNVSKVPLLGDLPLVGQLFRYTSEDTSKRNLMVF 569
Query: 414 ATPFLVK 420
+++
Sbjct: 570 IHTTVLR 576
>gi|157148976|ref|YP_001456295.1| outer membrane porin HofQ [Citrobacter koseri ATCC BAA-895]
gi|157086181|gb|ABV15859.1| hypothetical protein CKO_04814 [Citrobacter koseri ATCC BAA-895]
Length = 412
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 83/423 (19%), Positives = 163/423 (38%), Gaps = 25/423 (5%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++ L + P+ + K N ++ + + ++ K +++ P
Sbjct: 1 MKRWIAAALIAVMPA---VQAGKAQNVTLVVDDVPVVQVLQALAAQEKKNLVV-SPDVSG 56
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH----L 123
+ +S + + K+ G +++ +G + + + + A
Sbjct: 57 SLSLSLTDV-----PWKQAVQTVIKSAG----LVLRQEGNILHVHSVHWQNENAARQEAE 107
Query: 124 EMTLRRFIADSN--IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
+ LR + + I ++ + + + + T N A ++
Sbjct: 108 QARLRANLPLEDRSISLQYADASELAKAGEKLLSAKGSMTVDKRTNRLLLRDNNAALAAL 167
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ +++ +QV L I + L+++G + ++ + S
Sbjct: 168 ETWAAQMDLP-VEQVELAAHIVTINEKSLRELGVKWTLADAQLAGSPGQVTSLASDLSVA 226
Query: 242 GGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 227 AATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVS 286
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKA 356
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + ++
Sbjct: 287 SGESGATSVEFKEAVLGMEVTPTVLPKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEI 346
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
DT VE+ SG T+ L G+ + K+ +PLL IP LG+LF + E E+ + TP
Sbjct: 347 DTQVEVKSGETLALGGIFSRKNKSAKDSVPLLGDIPWLGSLFSHDGKENERRELVVFITP 406
Query: 417 FLV 419
LV
Sbjct: 407 RLV 409
>gi|307131917|ref|YP_003883933.1| general secretion pathway protein D [Dickeya dadantii 3937]
gi|399825|sp|Q01565|GSPD2_DICD3 RecName: Full=General secretion pathway protein D; AltName:
Full=Pectic enzymes secretion protein outD; Flags:
Precursor
gi|581156|emb|CAA46370.1| outD [Erwinia chrysanthemi]
gi|306529446|gb|ADM99376.1| General secretion pathway protein D [Dickeya dadantii 3937]
Length = 710
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 59/306 (19%), Positives = 115/306 (37%), Gaps = 31/306 (10%)
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
T+ + G T++ + L T R+ ++V+N L+I QV +
Sbjct: 350 SSGGRTITIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 402
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------- 241
+ IAE++ +G Q + + + +
Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAVIGTDQFRSNGTLTTAYASAL 462
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
V R ++ +L AL + LA P++ + A+F G + T S +
Sbjct: 463 SSFNGVTAGFYRGNWSMLLTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522
Query: 302 TG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354
T +V G+ L P + + L+I+ EVS ++ + ++ R
Sbjct: 523 TSADNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSTNSSLGVTFNTR 582
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ V + +G T+V+ GLL + + +PLL IP LG+LFR+ + + +
Sbjct: 583 TVNNAVMVTNGETVVVGGLLDKTSVESNDKVPLLGDIPWLGSLFRSKSQEVRKRNLMLFL 642
Query: 415 TPFLVK 420
P +++
Sbjct: 643 RPTIIR 648
>gi|261867159|ref|YP_003255081.1| protein transport protein HofQ [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412491|gb|ACX81862.1| protein transport protein HofQ [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 469
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 77/418 (18%), Positives = 152/418 (36%), Gaps = 35/418 (8%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
P V L + A+ + I D E+ + + + + + V +
Sbjct: 38 APLVPTLQQLALAHNTNL-IIDDELQGTVSLQLE-----NVDLDQLFRSVA----KIKQL 87
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
+ +Y F K G N G + + E T++ A ++ ++
Sbjct: 88 DLWQENGIYYFTK--GDTNTKFAGKMEEPFPLSLPMAEEPAQLTTATIKLHFAKASEVMK 145
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
++ G + + S + + L + + KK++ L+ +Q+ ++
Sbjct: 146 SLTGG---SGSLLSPNGSITFDD--RSNLLLIQDEPRSVRNIKKLIKELDKPI-EQIAIE 199
Query: 200 VTIAEVRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGKFVSEGGD 244
I + + LK++G + I +F G
Sbjct: 200 ARIVTINDESLKELGVRWGIFSPTDNAHRIGGSLAGNGFDNLVNQLNVNFPTTTTPAGSV 259
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ + L ALER + +A P L + +SAS G + Y V+ +G+
Sbjct: 260 ALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTELPYILVNEKSGS 319
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVEL 362
SV + + L TP + +I L + + P V G++ S ++ +T V
Sbjct: 320 QSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGSRVAYGLGEVVSIDKQEINTQVFA 379
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G TIVL G+ D I + + +P+L IP + LF ++ E+ I TP +++
Sbjct: 380 KDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFSKESERHQKRELVIFVTPHILR 437
>gi|331654967|ref|ZP_08355966.1| protein transport protein HofQ [Escherichia coli M718]
gi|331046982|gb|EGI19060.1| protein transport protein HofQ [Escherichia coli M718]
Length = 412
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 82/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + +V S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTIVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + NI ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|194431292|ref|ZP_03063585.1| protein transporter HofQ [Shigella dysenteriae 1012]
gi|194420747|gb|EDX36823.1| protein transporter HofQ [Shigella dysenteriae 1012]
Length = 412
Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats.
Identities = 82/425 (19%), Positives = 155/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + + + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +I ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+VL G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|330957039|gb|EGH57299.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 692
Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats.
Identities = 63/343 (18%), Positives = 134/343 (39%), Gaps = 21/343 (6%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 402 TSAESKADERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF------------SVKGVLDRFS 255
D K++G + ++SG S G + F + + +
Sbjct: 461 DYDKELGVRWGGATNTSGSSNWSTGTAAGGSTANSSTFVDMGAANATSGIGLGFLTNNTM 520
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
+ L A+E+ +++P + ++A G + Y+ SS+GAT+V+ + +
Sbjct: 521 LDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEVPYQES-SSSGATTVSFKEASLS 579
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
L TP + RI + ++ EP +P + + + V + G TIV+ G+
Sbjct: 580 LEVTPQITPDNRIIMEVKVTKDEPDYVNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFS 639
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ + + +P L +P LG LFR + ++E+ + TP +
Sbjct: 640 NTQSKSVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 682
>gi|323966201|gb|EGB61637.1| type IV pilus secretin PilQ [Escherichia coli M863]
Length = 412
Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats.
Identities = 82/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +I ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKAALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|28870471|ref|NP_793090.1| general secretion pathway protein D [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28853718|gb|AAO56785.1| general secretion pathway protein D [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 763
Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats.
Identities = 61/261 (23%), Positives = 101/261 (38%), Gaps = 19/261 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244
QV ++ I EV+ +G Q S T + + G +
Sbjct: 489 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 548
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298
S + + L ALE + L+ P+L ++ Q A G
Sbjct: 549 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 608
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355
+++T +SV GV+L P + G + + IQ +VS+ G + P R
Sbjct: 609 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 668
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T V SG T++L GL+K D + +P L +IP L LF NS +++ TE+ + T
Sbjct: 669 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 728
Query: 416 PFLVKPVAMRDLSRPDDHYSV 436
P ++ + + D Y
Sbjct: 729 PRVI--TSSSQARQVTDDYRQ 747
>gi|209920843|ref|YP_002294927.1| outer membrane porin HofQ [Escherichia coli SE11]
gi|218697071|ref|YP_002404738.1| outer membrane porin HofQ [Escherichia coli 55989]
gi|331670209|ref|ZP_08371048.1| protein transport protein HofQ [Escherichia coli TA271]
gi|331679451|ref|ZP_08380121.1| protein transport protein HofQ [Escherichia coli H591]
gi|209914102|dbj|BAG79176.1| putative transport protein [Escherichia coli SE11]
gi|218353803|emb|CAV00141.1| fimbrial transporter [Escherichia coli 55989]
gi|323944387|gb|EGB40462.1| type IV pilus secretin PilQ [Escherichia coli H120]
gi|324116416|gb|EGC10335.1| type IV pilus secretin PilQ [Escherichia coli E1167]
gi|331062271|gb|EGI34191.1| protein transport protein HofQ [Escherichia coli TA271]
gi|331072623|gb|EGI43948.1| protein transport protein HofQ [Escherichia coli H591]
Length = 412
Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats.
Identities = 82/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +I ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|94500719|ref|ZP_01307248.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
gi|94427041|gb|EAT12022.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
Length = 640
Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats.
Identities = 84/454 (18%), Positives = 161/454 (35%), Gaps = 49/454 (10%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV-DVQDVL 70
+ L L +K ANA ++ + + +KI L+ + ++ V +++
Sbjct: 149 LVPILRPMVAKYGHLAGVKSANALIVTDHASNVRRLEKIIQRLDGSGVSELEVVQLEEAW 208
Query: 71 VSDPTKADVVV-HSPRTMYLFGKN------VGQANVILIGHDGKQMLNLDILIERDIAHL 123
V D D++ P + GK G+ V+ + ++ + + L
Sbjct: 209 VGD--IVDILTNLDPDKVSEGGKAREASGVAGRIRVVADERANRLIIQGEQSARERVKEL 266
Query: 124 EMTLRRFIADSN----IRVEMVSDTVV------LHGMVRTIQDSQRAVELSETFLSQSGR 173
TL R S IR++ + L G V+ + +A
Sbjct: 267 IATLDRPSKFSGKASVIRLQHADSEELAELLKNLMGDVKDDKGKSQAGGSVSIHADTGLN 326
Query: 174 NQYANSSSK------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
+ +++ L++ QV ++ I EV + ++G Q + +G +
Sbjct: 327 ALVVRAEPSVMSEIKEIVTELDVR-RAQVLIEAAIVEVTGQVDDRVGVQTAALDQETGET 385
Query: 228 KSFAADFGGKFVS----------------EGGDFSVKGVLDRFSFETVLHALERATAIRT 271
A DF S G G F ++ ALE +
Sbjct: 386 PLVATDFANAGTSISQLITGIATGQPAISSGLTLGGVGQNGDTEFAFLVQALESVSNANL 445
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-----GATSVTTHDYGVVLHFTPTVLSPG 326
L+ P++ + A G + T S+S+ T++ D G L TP V
Sbjct: 446 LSTPSIMTMDNHEAEIIVGQNVPFVTGSTSSTSNSNPFTTIKREDIGTTLKVTPHVQDGK 505
Query: 327 RIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+ L ++ V R T + +G ++L GL++D +Q+ + +
Sbjct: 506 FVRLSVEQSTESVAPTAVEGQADLITNKRSIQTQILAENGEIVMLGGLIRDAVQESESKV 565
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P L IPI+G LFR++ +R + + + P +V
Sbjct: 566 PFLGDIPIIGWLFRSTSESRVKQNLIVFLKPTVV 599
>gi|200387767|ref|ZP_03214379.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199604865|gb|EDZ03410.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 389
Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats.
Identities = 73/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
Q + +D L + + + +I ++ + + + +
Sbjct: 69 HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKR 128
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A + +K ++ +++ QV L I + L+++G + ++ ++
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
S V G ++ + L ALE+ + +A P L A
Sbjct: 188 GSVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386
>gi|251793894|ref|YP_003008626.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700]
gi|247535293|gb|ACS98539.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700]
Length = 474
Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats.
Identities = 70/414 (16%), Positives = 152/414 (36%), Gaps = 38/414 (9%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVII---------LQVPVDVQDVLVSDPTKADVVVHS 83
A + + ++ + +++ ++ + + + + V + +
Sbjct: 40 KQAPLVPTLQQLALAQNVNLIIDDELQGTVSLQLENVDLDQLFRSVA----KIKQLDLWQ 95
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
+Y K + + + ++ E T++ A ++ ++ ++
Sbjct: 96 ENGIYYLSKL--DTSAKFATKMDEPFILPAVMTEEPTRLTTATIKLHFAKASEVMKSLTG 153
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
G + + S + S L Q AN KK++ L+ +Q+ ++ I
Sbjct: 154 G---SGSLLSPNGSLTFDDRSNLLLIQDEPKSIANL--KKLIKELDKPI-EQIAIEARIV 207
Query: 204 EVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGKFVSEGGDFSVK 248
+ + LK++G + + + +F G
Sbjct: 208 TMNGESLKELGVRWGMFNPTENAHRIGGSLAGNGFDNITNQLNVNFPTATTPAGSVALQV 267
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
++ + L ALER + +A P L + ++AS G + Y V+ +G+ SV
Sbjct: 268 AKINGRLLDLELTALERENNVEIIASPRLLTTNKKAASIKQGTELPYILVNEKSGSQSVE 327
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGG 366
+ + L TP + +I L + + P V G++ S ++ +T V G
Sbjct: 328 FREAVLGLEVTPHISQDKQILLDLVVSQNAPGSRVAHGLGEVVSIDKQEINTQVFAKDGE 387
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
TIVL G+ D I + + +PLL IP + LF ++ E+ I TP +++
Sbjct: 388 TIVLGGVFHDTITKNVDKVPLLGDIPGVKHLFSKESERHQKRELVIFVTPHILR 441
>gi|170681657|ref|YP_001745634.1| outer membrane porin HofQ [Escherichia coli SMS-3-5]
gi|170519375|gb|ACB17553.1| protein transporter HofQ [Escherichia coli SMS-3-5]
Length = 412
Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats.
Identities = 83/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + NI ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|308188407|ref|YP_003932538.1| Type IV pilus biogenesis and competence protein pilQ precursor
[Pantoea vagans C9-1]
gi|308058917|gb|ADO11089.1| Type IV pilus biogenesis and competence protein pilQ precursor
[Pantoea vagans C9-1]
Length = 423
Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats.
Identities = 63/323 (19%), Positives = 123/323 (38%), Gaps = 31/323 (9%)
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
+L E + L ++ V+ ++ ++L
Sbjct: 122 AVILRYASASEVHASLLTERQSLMTPRGSVTVDKRTNALLLRDTA--------------- 166
Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
A +++ + L++ +Q+ L I + + L+++G + + +
Sbjct: 167 ---------AALKETERWIRALDLPL-EQIELSAHIVTISEEHLQELGVKWGLQAGDAAV 216
Query: 227 SKSF----AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ + + L ALE+ I +A P L
Sbjct: 217 TDILHHPRLDIPLALSSPGISVGMALARIGGQLLDLELSALEQENQIEIIASPRLFTSHQ 276
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
Q+AS G + Y+ + ++GATS+ + + + TPT+ GRI L+I + P
Sbjct: 277 QTASIKQGTEIPYEVSAGNSGATSIEFKEAVLGMEVTPTISGNGRIQLKIHISQNMPGRS 336
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
I D+ S ++ +T V + G T+ L G+ + + +PLL +P++G LFR
Sbjct: 337 IRTGDSDILSIDKQEIETQVTVSDGQTLALGGIFQQQRSHGENKVPLLGNVPLIGGLFRQ 396
Query: 401 SRFNREETEIFIAATPFLVKPVA 423
R++ E+ I TP LV+ A
Sbjct: 397 QSEQRKKRELVIFITPRLVREAA 419
>gi|238754545|ref|ZP_04615899.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
gi|238707176|gb|EEP99539.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
Length = 674
Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats.
Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 13/254 (5%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----KSFAADFGG 236
+KV+ L+I QV ++ I E + +G Q G + G
Sbjct: 359 EKVIEKLDIR-RAQVLVEAIIVEAQDGEGINLGIQWDTKQKKVGGFISYNKSNLGNIQNG 417
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
G + R ++ + AL ++ LA P++ + A F+ G +
Sbjct: 418 VTSIANGISGLTTGFYRGNWSGLFTALATNSSNEILATPSIVTLDNMDAEFSVGQEVPVL 477
Query: 297 TVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MP 349
+ +T +++ G++L P + + L I+ EVS N
Sbjct: 478 SSQQTTSTDKVYNTISRQSVGIMLKVKPQINKGDSVLLEIRQEVSSVAENSNVDKDNIGS 537
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
++ R + V + SG T+V+ GLL + + IPLL IPI+G LFR + E+
Sbjct: 538 TFNKRVVNNAVLVKSGETVVVGGLLDKKVSNVINKIPLLGDIPIIGNLFRQKKEKIEKRN 597
Query: 410 IFIAATPFLVKPVA 423
+ + P +++
Sbjct: 598 LILFIKPTIIRESD 611
>gi|204928849|ref|ZP_03220048.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204322282|gb|EDZ07480.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 389
Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 77/376 (20%), Positives = 147/376 (39%), Gaps = 17/376 (4%)
Query: 53 GLNKVIILQVPVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
++ ++ P + + A V + + L + G + + Q
Sbjct: 19 EQDRQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQ 71
Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
+ +D L + + + +I ++ + + + + T
Sbjct: 72 AWQKEHSARQDAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNR 131
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
N+ A + +K ++ +++ QV L I + L+++G + ++ ++ S
Sbjct: 132 LLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSV 190
Query: 229 SFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
V G ++ + L ALE+ + +A P L A Q A
Sbjct: 191 GDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPA 250
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGV 343
S G + Y+ S +GATSV + + + TPTVL GRI L+ I V ++
Sbjct: 251 SIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQILQQ 310
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+
Sbjct: 311 ADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGK 370
Query: 404 NREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 371 EDERRELVVFITPRLV 386
>gi|56476309|ref|YP_157898.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum
aromaticum EbN1]
gi|56312352|emb|CAI06997.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum
aromaticum EbN1]
Length = 769
Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 70/352 (19%), Positives = 129/352 (36%), Gaps = 17/352 (4%)
Query: 86 TMYLFGKNVGQAN-----VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
+Y++ G A + + G+ L R + S + +
Sbjct: 366 QLYVYPVQNGSAQHLGSLLSAVFGGGQAGAARTPTDSGVAPGLSSIGRTGLGGSGMMSQA 425
Query: 141 VSDTVVLHG---MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQ 195
+++ G T V + + + S +K+ L Q
Sbjct: 426 LNNAGRNDGSQTQATTQFSLGPLVRVVADEFNNALLIYAPGSEYRKIEAALRRLDLSPTQ 485
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFVSEGGDFSVKGVLD 252
V ++ +I EV + G Q G G S F FS
Sbjct: 486 VLIEASILEVTLSDETRFGLQWFFEGKLGGDYRGSGLFTDRASETLGRTVPGFSYSITNA 545
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVT 308
VL+A+ + + + ++ P++ + +A G Q T +TS+
Sbjct: 546 AGQVRAVLNAMAQKSLVNVISSPSVMVLDNHTAVIHVGDQQPIRSTQTVTDGGTTSTSIQ 605
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
D GV+L TP+ + G + + I+ V++ +A S+ R+ + V + +G T+
Sbjct: 606 YKDTGVMLQVTPSANAGGMVAMDIKQSVTDVGAVDDATGQRSFNQREVASKVAVRTGETV 665
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+L GL++D K G+P L IP+LG LF + TE+ + TP +V+
Sbjct: 666 ILGGLIRDSDTNGKTGVPWLHDIPVLGPLFGTTSDVTRRTELLVMITPRVVQ 717
>gi|225024352|ref|ZP_03713544.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC
23834]
gi|224942849|gb|EEG24058.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC
23834]
Length = 707
Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 49/251 (19%), Positives = 105/251 (41%), Gaps = 16/251 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--------------GSSSGPS 227
++++ L++ QV ++ I E + +G + G ++G +
Sbjct: 449 ERLIEQLDVPAR-QVMIEARIVEANDGFSRALGVKFGYNKTSGSTRIGSGLGSGGANGNT 507
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
S A + +S ++ L + L A++ + ++ P + + A+
Sbjct: 508 FSIAPNVNLPAISATSSITIVRALSSGALGLELTAMQEQNRGKIISSPRVLTQDRKEATI 567
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
+G + Y+ SSS ++ + + + L TP + G + + I+ +
Sbjct: 568 KAGREIPYQEASSSGATST-SFKEAVLGLTVTPQITPDGNVIMDIKLNKDSVDENCSVLG 626
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P ++ T + GGTI+L G+ +++ + +PLL IP++G LFR +R N +
Sbjct: 627 TPCINTKELVTRAMVEDGGTIILGGIYEEENSNSQYKVPLLGDIPVVGNLFRGTRRNNSK 686
Query: 408 TEIFIAATPFL 418
E+ I TP +
Sbjct: 687 NELLIFITPRI 697
>gi|321226537|gb|EFX51587.1| Type IV pilus biogenesis protein PilQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
Length = 389
Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats.
Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
Q + +D L + + +I ++ + + + +
Sbjct: 69 HSQAWQKEHSARQDAERLRFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKR 128
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A + +K ++ +++ QV L I + L+++G + ++ ++
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
S V G ++ + L ALE+ + +A P L A
Sbjct: 188 GSVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHL 247
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386
>gi|91212863|ref|YP_542849.1| outer membrane porin HofQ [Escherichia coli UTI89]
gi|117625659|ref|YP_858982.1| outer membrane porin HofQ [Escherichia coli APEC O1]
gi|218560448|ref|YP_002393361.1| outer membrane porin HofQ [Escherichia coli S88]
gi|237703118|ref|ZP_04533599.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA]
gi|91074437|gb|ABE09318.1| protein transport protein HofQ precursor [Escherichia coli UTI89]
gi|115514783|gb|ABJ02858.1| putative transport protein HofQ precursor [Escherichia coli APEC
O1]
gi|218367217|emb|CAR04991.1| fimbrial transporter [Escherichia coli S88]
gi|226902382|gb|EEH88641.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA]
gi|294490021|gb|ADE88777.1| protein transporter HofQ [Escherichia coli IHE3034]
gi|312947939|gb|ADR28766.1| outer membrane porin HofQ [Escherichia coli O83:H1 str. NRG 857C]
gi|323950048|gb|EGB45931.1| type IV pilus secretin PilQ [Escherichia coli H252]
gi|323954672|gb|EGB50454.1| type IV pilus secretin PilQ [Escherichia coli H263]
Length = 412
Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats.
Identities = 79/413 (19%), Positives = 157/413 (38%), Gaps = 21/413 (5%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISI--GLNKVIILQVPVDVQDVLVSDPTK 76
+ + +P ++ A + + ++ + + + K+ ++ P V +
Sbjct: 6 AALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQVLAEQEKLNLVVSPDVSGTVSLHLTDV 65
Query: 77 -----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
VV S L + G + + D + ++ +
Sbjct: 66 PWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQEAEQTRAQANLPL 117
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
+ NI ++ + + + T N+ A S+ ++ ++ +++
Sbjct: 118 ENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSTLEQWVSQMDLP 177
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK--- 248
QV L I + L+++G + ++ + G +
Sbjct: 178 -VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATATTHIGFNI 236
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
G ++ + L ALE+ + +A P L A Q AS G + Y+ S +GATSV
Sbjct: 237 GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVE 296
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
+ + + TPTVL GRI L++ V V+ G++ + ++ +T VE+ SG
Sbjct: 297 FKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGE 356
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV
Sbjct: 357 TLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409
>gi|213970091|ref|ZP_03398223.1| type II and III secretion system protein [Pseudomonas syringae pv.
tomato T1]
gi|301381448|ref|ZP_07229866.1| general secretion pathway protein D [Pseudomonas syringae pv.
tomato Max13]
gi|302061436|ref|ZP_07252977.1| general secretion pathway protein D [Pseudomonas syringae pv.
tomato K40]
gi|302133002|ref|ZP_07258992.1| general secretion pathway protein D [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213925195|gb|EEB58758.1| type II and III secretion system protein [Pseudomonas syringae pv.
tomato T1]
Length = 775
Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats.
Identities = 61/261 (23%), Positives = 101/261 (38%), Gaps = 19/261 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244
QV ++ I EV+ +G Q S T + + G +
Sbjct: 501 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 560
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298
S + + L ALE + L+ P+L ++ Q A G
Sbjct: 561 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 620
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355
+++T +SV GV+L P + G + + IQ +VS+ G + P R
Sbjct: 621 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 680
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T V SG T++L GL+K D + +P L +IP L LF NS +++ TE+ + T
Sbjct: 681 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 740
Query: 416 PFLVKPVAMRDLSRPDDHYSV 436
P ++ + + D Y
Sbjct: 741 PRVI--TSSSQARQVTDDYRQ 759
>gi|145632680|ref|ZP_01788414.1| competence protein E [Haemophilus influenzae 3655]
gi|144986875|gb|EDJ93427.1| competence protein E [Haemophilus influenzae 3655]
Length = 401
Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 142 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLAGNSFENIADNLNVNFATTT 201
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 202 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 261
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 262 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 321
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 322 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 381
Query: 417 FLVKP 421
++K
Sbjct: 382 HILKA 386
>gi|323974808|gb|EGB69920.1| type IV pilus secretin PilQ [Escherichia coli TW10509]
Length = 412
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 82/426 (19%), Positives = 162/426 (38%), Gaps = 31/426 (7%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L PSV P + + + + +K+++ ++ + V +
Sbjct: 1 MKQWIAALLLMLIPSVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSL 60
Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI---- 120
+ DV + + K+ G ++ +G + + + D
Sbjct: 61 HLTDV------------PWKQALQTVVKSAG----LITRQEGNILSVHSVAWQNDNIARQ 104
Query: 121 AHLEMTLRRFIADSN--IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
+ ++ + N I ++ + + + T N+ A
Sbjct: 105 EAEQARVQASLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKAAL 164
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
S+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 165 SALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDL 223
Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V G ++ + L ALE+ + +A P L A Q AS G + Y
Sbjct: 224 SVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 283
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRV 353
+ S +GATSV + + + TPTVL GRI L++ V V+ G++ +
Sbjct: 284 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 343
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 344 QEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVF 403
Query: 414 ATPFLV 419
TP LV
Sbjct: 404 ITPRLV 409
>gi|239995641|ref|ZP_04716165.1| general secretion pathway protein D [Alteromonas macleodii ATCC
27126]
Length = 683
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 71/330 (21%), Positives = 121/330 (36%), Gaps = 47/330 (14%)
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
++I+ E + S A E S + S ++V+ L+I
Sbjct: 290 SASIQAEEQGGGTTSRRAGSNREISIDAHEDSNAIV--ITAEPDMMRSLEEVVRQLDIR- 346
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------ 240
QV ++ I EV +G Q + + G V+
Sbjct: 347 RAQVQVEAIIVEVFEGDGTTLGVQWASEAGGGTQFSNGVVPVGSLAVALKQAEDDTDTEA 406
Query: 241 -------------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
GG + + + V+ A+ T LA P
Sbjct: 407 YVTDDGEVVTVNTTDEGDYTALASLLGGANGLIAGVIENGWGAVVQAVSTDTNSNILATP 466
Query: 276 TLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
LT + + A F G + T ++S +V + G+ L TP + + L
Sbjct: 467 HLTTMDNEEAFFIVGQEVPIITGTTTGANNSNPFQTVDRQEVGIKLKVTPQINEGDAVQL 526
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
I+ EVS + S R+ TTV + GGTIVL GL+ +D+Q+ + +PLL
Sbjct: 527 LIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESESKVPLLGD 584
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
IPILG LF+++ ++ + + + P +V+
Sbjct: 585 IPILGHLFKSTSTSKRKRNLMVFLKPTIVR 614
>gi|89074487|ref|ZP_01160964.1| putative type II secretory pathway, component EpsD [Photobacterium
sp. SKA34]
gi|89049775|gb|EAR55325.1| putative type II secretory pathway, component EpsD [Photobacterium
sp. SKA34]
Length = 672
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 77/465 (16%), Positives = 162/465 (34%), Gaps = 84/465 (18%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKV-----IILQVPVDVQ----DVLVSDPTKADV 79
AN +I + + I +++ ++ + ++ + AD
Sbjct: 158 YDPANIIMITGRAAVVNRLADIIERVDRAGNKDVTVVSLNNASAPEMVRIVEALNKSADA 217
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN---- 135
+L K V +++ D + + L L + +A S
Sbjct: 218 KSTPG---FLIPKAV------ADERTNSVLISGDPKVRERLKALIHKLDKEMAASGNSRV 268
Query: 136 --IRVEMVSDTV-VLHGMVRTIQDS-------------QRAVELSETFLSQS--GRNQYA 177
++ +D V VL G+ IQ + + + +
Sbjct: 269 IYLKYAKAADMVDVLKGVSENIQAANKSNTPQVSQSSKDEVMISAHDATNSLIISAPSDV 328
Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
+ + +++ L+I QV ++ I EV+ G Q + A GG
Sbjct: 329 MNKLESIISQLDIR-RAQVHIEAMIVEVQEGDGVNFGVQFGSQDGGVIQFGNSGAPIGGL 387
Query: 238 FVSE-------------------------------------GGDFSVKGVLDRFSFETVL 260
++ GG + + ++
Sbjct: 388 LSAQEAAKDRTKTETRYDADGKPYSYETTESGDLAPMAAFLGGIKGAAAAITMGDWTALV 447
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVV 315
A+++ + L+ P +T + Q A+ + G + T S + T+V D G+
Sbjct: 448 TAIKQNRNVNVLSTPNVTVLDNQEANLSVGQEVPVTTGSQTGSNNDNPFTTVERKDVGIQ 507
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
L TP + + ++I+ VS+ A D+ + R+ T+V + G I L GL++
Sbjct: 508 LKVTPQINEGDSVQMKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLMQ 566
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + ++ +P+L IP+LGALFR++ E+T + + P +++
Sbjct: 567 EKTLESEQKVPILGDIPVLGALFRSTNNQTEKTNLMVFIRPTILR 611
>gi|304397810|ref|ZP_07379686.1| type IV pilus secretin PilQ [Pantoea sp. aB]
gi|304354521|gb|EFM18892.1| type IV pilus secretin PilQ [Pantoea sp. aB]
Length = 423
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 70/431 (16%), Positives = 152/431 (35%), Gaps = 27/431 (6%)
Query: 7 TFFTMMSIFLFSSNPSVAK--LPPIKEANAAVINISDVEIGKGKKISI----GLNKVIIL 60
+ + + + P A P + A + + ++ ++ + + L
Sbjct: 2 VWIATLLLVISCLLPVYAADEEPLSLTFDNAPVERILQALADYQQFNLMIAPEVEGSLSL 61
Query: 61 QVPV-DVQDVLVSDPTKADVVVHS-PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
++ L A + + + ++ ++ +Q + +
Sbjct: 62 RLDNLPWHQALDLVARMAKLTLIEQDNVLLVYPES--------WQQAQQQARAAEQQAQL 113
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
L+ S V +L + T A
Sbjct: 114 QQVPLQQRAVTLRYASASEVHAS----LLSERQSLMTARGSVTVDKRTNALLLRDTAAAL 169
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADF 234
+++ + L++ +Q+ L I + + L+++G + + + +
Sbjct: 170 KETERWIRALDLPL-EQIELSAHIVTISEEHLQELGVKWGLQAGDAAVTDILHHPRLDIP 228
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
+ + L ALE+ I +A P L Q+AS G +
Sbjct: 229 LALSSPGISVGMALARIGGQLLDLELSALEQENQIEIIASPRLFTSHQQTASIKQGTEIP 288
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYR 352
Y+ + ++GATS+ + + + TPT+ GRI L+I+ + P I ++ S
Sbjct: 289 YEVSAGNSGATSIEFKEAVLGMEVTPTLSGNGRIQLKIRISQNMPGRSIRTGDSNILSID 348
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
++ +T V + G T+ L G+ + + + +PLL +P++G LFR R++ E+ I
Sbjct: 349 KQEIETQVTVSDGQTLALGGIFQQQRSRGENKVPLLGNVPLIGGLFRQQSEQRKKRELVI 408
Query: 413 AATPFLVKPVA 423
TP LV+ A
Sbjct: 409 FITPRLVREAA 419
>gi|289824820|ref|ZP_06544263.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
Length = 389
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
Q + +D L + + + +I ++ + + + +
Sbjct: 69 HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKR 128
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A + +K ++ +++ QV L I + L+++G + ++ ++
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ V G ++ + L ALE+ + +A P L A
Sbjct: 188 GAVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386
>gi|330720479|gb|EGG98780.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
IMCC2047]
Length = 332
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 13/239 (5%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAADFGGKFVSEGG 243
QV ++ I R KQ+G + T G S +
Sbjct: 93 RQVQVEARIVIARDTFDKQLGIRWGFTAQGGGSSDRTLTTGGGGLAGDVAVDLGVSGATS 152
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ V + + L ALE +++P L GQ+A SG + Y+ SS+G
Sbjct: 153 ALQLGFVHGNDTLDLTLSALESDGVSEVVSQPKLITADGQTARIESGVEIPYQEA-SSSG 211
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
ATSV+ D + L TP + RI + ++ V++ +G +PS R+ T V +
Sbjct: 212 ATSVSFKDAVLALEVTPQITPDDRIIMDLK--VNKDSVGEIFLGIPSVDTREIQTQVLVE 269
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
+G T+VL G+ + + + P L IP+LG LF+ ++TE+ I TP L+K
Sbjct: 270 NGETVVLGGVYERETIENISKTPFLGDIPVLGELFKRKTKEDDKTELLIFITPKLIKDT 328
>gi|188492932|ref|ZP_03000202.1| protein transporter HofQ [Escherichia coli 53638]
gi|188488131|gb|EDU63234.1| protein transporter HofQ [Escherichia coli 53638]
Length = 412
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 82/426 (19%), Positives = 160/426 (37%), Gaps = 31/426 (7%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ ++ + V +
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSL 60
Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI---- 120
+ DV + + K+ G ++ +G + I + +
Sbjct: 61 HLTDV------------PWKQALQTVVKSAG----LITRQEGNILSVHSIAWQNNNIARQ 104
Query: 121 AHLEMTLRRFIADSN--IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
+ + + N I ++ + + + T N+ A
Sbjct: 105 EAEQARAQANLPQENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTAL 164
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
S+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 165 SALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDL 223
Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V G ++ + L ALE+ + +A P L A Q AS G + Y
Sbjct: 224 SVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 283
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
+ S +GATSV + + + TPTVL GRI L+ I V V+ G++ +
Sbjct: 284 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 343
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 344 QEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVF 403
Query: 414 ATPFLV 419
TP LV
Sbjct: 404 ITPRLV 409
>gi|311280237|ref|YP_003942468.1| general secretion pathway protein D [Enterobacter cloacae SCF1]
gi|308749432|gb|ADO49184.1| general secretion pathway protein D [Enterobacter cloacae SCF1]
Length = 647
Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats.
Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 9/247 (3%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFV 239
+KV++ L+I QV ++ IAEV+ +G Q + G+ +
Sbjct: 331 EKVIDKLDIR-RAQVLVEAIIAEVQDGSGLDVGVQWTSQHGGTQFTSTGLPIGQVKNGKN 389
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ G + F ++ AL L+ P++ + + ASF G + S
Sbjct: 390 TGIGFNGLATGFFNGDFGALMTALSTDGKNDILSTPSVVTLDNKEASFNVGQDVPVLSGS 449
Query: 300 SS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353
+ +V G L P + I L+I+ EVS P++
Sbjct: 450 QTTSGDNVFNTVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDSNATEDASLGPTFNT 509
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R + V + SG T+VL GL++ + +Q +PLL IP++G LFR + + + + +
Sbjct: 510 RTINNEVMVHSGQTVVLGGLIESNTKQSVSKVPLLGDIPLVGQLFRYTSQDTSKRNLMVF 569
Query: 414 ATPFLVK 420
+++
Sbjct: 570 IHTTVLR 576
>gi|45657443|ref|YP_001529.1| general secretory pathway protein D [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|294828092|ref|NP_712556.2| type II secretory pathway component protein D [Leptospira
interrogans serovar Lai str. 56601]
gi|45600682|gb|AAS70166.1| general secretory pathway protein D [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|293385940|gb|AAN49574.2| type II secretory pathway component protein D [Leptospira
interrogans serovar Lai str. 56601]
Length = 596
Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats.
Identities = 59/253 (23%), Positives = 96/253 (37%), Gaps = 18/253 (7%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
QV L+V I E+ L G G + G S + S G L
Sbjct: 312 ARKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSNGQVNPNINTL 371
Query: 252 DRFSFETV----------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
FS + L A + L+ P + + Q A + G +T S +
Sbjct: 372 SGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQDVPVRTQSRN 431
Query: 302 TGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
G + G+ L FTP V +I L + E+ AG P++
Sbjct: 432 AGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNKITLELFQEIKNIAEIALAGGNPTFNR 491
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R+ T++ + + +IV+ GL+ +D Q+ IP L IP LG LF+ + ++T + +
Sbjct: 492 REIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTEKIKKTNLMVF 551
Query: 414 ATPFLVKPVAMRD 426
TP ++ D
Sbjct: 552 ITPHILDSRETAD 564
>gi|195873801|ref|ZP_02699139.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197248588|ref|YP_002148409.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|195632392|gb|EDX50876.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197212291|gb|ACH49688.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
Length = 389
Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats.
Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
Q + +D L + + + +I ++ + + + +
Sbjct: 69 HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKR 128
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A + +K ++ +++ QV L I + L+++G + ++ ++
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ V G ++ + L ALE+ + +A P L A
Sbjct: 188 GAVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386
>gi|322614138|gb|EFY11074.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618029|gb|EFY14922.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625356|gb|EFY22182.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322632290|gb|EFY29041.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322636359|gb|EFY33066.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643215|gb|EFY39784.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644783|gb|EFY41319.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322651192|gb|EFY47576.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322654940|gb|EFY51255.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322663102|gb|EFY59306.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668588|gb|EFY64741.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674608|gb|EFY70701.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322678186|gb|EFY74247.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682557|gb|EFY78578.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684270|gb|EFY80276.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323192175|gb|EFZ77407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196399|gb|EFZ81551.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201800|gb|EFZ86863.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323206342|gb|EFZ91303.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323211936|gb|EFZ96763.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216841|gb|EGA01564.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323222240|gb|EGA06623.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323228183|gb|EGA12314.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233550|gb|EGA17643.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323236988|gb|EGA21055.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323243797|gb|EGA27813.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323255748|gb|EGA39498.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323267633|gb|EGA51115.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323268514|gb|EGA51981.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 389
Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats.
Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
Q + +D L + + + +I ++ + + + +
Sbjct: 69 HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKR 128
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A + +K ++ +++ QV L I + L+++G + ++ ++
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ V G ++ + L ALE+ + +A P L A
Sbjct: 188 GAVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386
>gi|332289551|ref|YP_004420403.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179]
gi|330432447|gb|AEC17506.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179]
Length = 380
Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats.
Identities = 57/306 (18%), Positives = 118/306 (38%), Gaps = 28/306 (9%)
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
+ ++ + +L G+ + + L + ++ K++++ L+ G
Sbjct: 61 NELYKIFNENGNGLLSGLSGFSVEPSNNLLLVK-------GDKQQIQKFKQLISQLDKPG 113
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGK 237
+ Q+ ++ I + + L ++G + + S +F
Sbjct: 114 K-QIAIEARIVTINNESLNELGVRWGMFSDADNFHKVAAKFDSFGLENLSSHLNVNFSTS 172
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ V + R + L ALE+ + +A P L + + AS G + Y
Sbjct: 173 SEAASIALQVAKIHGRL-LDLELKALEQENNVEIIASPHLLTSNQRKASIKQGSEIPYVI 231
Query: 298 VSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRV 353
+ + T + + + L TP VL G I L + + + AG + +
Sbjct: 232 EDDTERSSRTHIEFKEAVLGLEVTPQVLHQGVISLDLVVTQNSAGASIPYGAGQVVTIDK 291
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
++ + V + G T+VL G+ D I + + +PLL IP LG LF + ++ E+ I
Sbjct: 292 QEVQSQVLVRDGETVVLGGIFHDLIGKGENKVPLLGDIPGLGKLFSSKSERHQKRELVIF 351
Query: 414 ATPFLV 419
TP ++
Sbjct: 352 ITPRII 357
>gi|121999148|ref|YP_001003935.1| general secretion pathway protein D [Halorhodospira halophila SL1]
gi|121590553|gb|ABM63133.1| general secretion pathway protein D [Halorhodospira halophila SL1]
Length = 670
Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats.
Identities = 79/449 (17%), Positives = 150/449 (33%), Gaps = 40/449 (8%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L A+L E N +++ + IG+ K++ +++ V + +
Sbjct: 165 LLRPLISDEAELAAYSETNTLIVSETAGNIGRLKRLIDRVDQDTTGVTEVVPLEHGSASE 224
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
V P + + + ++ D + L L + D
Sbjct: 225 IVEMVEAIEPEK-----RAGRRLLLAADDRSNSVLVGGDPARRPSVMELIQRLDAELEDE 279
Query: 135 NIRV-----EMVSDTVV--LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182
++++V L GM + ++ N
Sbjct: 280 EGAAVIYLRYSDAESIVPILEGMAEGMARGPEGETGVSIHDHEATNALIINGPPDLVAKL 339
Query: 183 -KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-- 239
V+N L++ QV ++ IAEV + +++G Q G +F A GG
Sbjct: 340 RGVVNRLDVR-RAQVLVEAIIAEVSAERSQELGIQWGALGDQGVGLVNFDAAGGGSVTNI 398
Query: 240 --------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
S G + +L AL + L+ P++ + + A
Sbjct: 399 GRAAAGGTDALGNLSLGSGLTAGAATRGGELGVLLRALSSESDSNILSTPSVMTMDNEEA 458
Query: 286 SFTSGGQHLYKTVS---SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
G + T + S+ D GV L P + + L I+ EVS+
Sbjct: 459 EIVVGQNVPFVTGREVGDTRDFQSIQREDVGVQLRIRPQINEGDSLKLDIEKEVSDVQER 518
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
A D+ +R T+ + G +VL GL+ + + + +P L IP LG LFR
Sbjct: 519 GEAEDI-VTSMRSITTSAMVDDGEIMVLGGLMDEQAESQTDRVPGLGSIPGLGWLFRYES 577
Query: 403 FNREETEIFIAATPFLVKPV-AMRDLSRP 430
++ + + P +++ R+L+ P
Sbjct: 578 SAAQKQNLMVFLRPRIIENRDDARELTSP 606
>gi|331006529|ref|ZP_08329826.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
IMCC1989]
gi|330419665|gb|EGG94034.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
IMCC1989]
Length = 678
Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 6/241 (2%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKF 238
K ++N +++ QV ++ I +++ GF + +S+ + + F
Sbjct: 434 KSLINKVDVPVR-QVMIEARIVSATDTFMEEFGFFVGASDTSTANNPNLTTSALSDATVF 492
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G V V + S + ALE + +++P + Q+A +SG Q + +
Sbjct: 493 NPVGSVLDVSYVSNGVSLALEIQALEDSGYGEVVSQPRVLTGDKQTAKISSGQQIPFTSS 552
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
T T D + L TP + RI + ++ V + T
Sbjct: 553 DGDTVTTI--FQDAVLSLEVTPQITPDNRIIMELKVNRDSLDTSTVTVSGSPINVTELTT 610
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
T + G TIVL G+ + +P+L IP+LG LF ++ + TE+ I TP +
Sbjct: 611 TALVGDGDTIVLGGIYEQTKTSSVSKVPVLGDIPVLGRLFTSNTDQDDRTELLIFITPRI 670
Query: 419 V 419
+
Sbjct: 671 L 671
>gi|330972847|gb|EGH72913.1| general secretion pathway protein D [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 775
Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats.
Identities = 65/305 (21%), Positives = 110/305 (36%), Gaps = 20/305 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G +++ S R + + + L+ QV ++ I EV+
Sbjct: 458 GNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVQLT 516
Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+G Q S T + + G + + + + L
Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTSGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGV 314
ALE + L+ P+L ++ Q A G S+ T +SV GV
Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNSSTDTTLSSVEYVQTGV 636
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
+L P + G + + IQ +VS G +A P R T V SG T++L
Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTDTTGNDANGNPRISTRSVATQVAAQSGQTVLLG 696
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + +
Sbjct: 697 GLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKNRTELIVLITPRVI--TSSSQARQVT 754
Query: 432 DHYSV 436
D Y
Sbjct: 755 DDYRQ 759
>gi|90581085|ref|ZP_01236885.1| putative type II secretory pathway, component EpsD [Vibrio angustum
S14]
gi|90437781|gb|EAS62972.1| putative type II secretory pathway, component EpsD [Vibrio angustum
S14]
Length = 674
Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats.
Identities = 58/314 (18%), Positives = 120/314 (38%), Gaps = 48/314 (15%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
+ + + + + +N + + +++ L+I QV ++ I EV+
Sbjct: 302 SQSSKDEVMISAHDATNSLIISAPSNVMNKLESIISQLDIR-RAQVHIEAMIVEVQEGDG 360
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------------------- 241
G Q S + A GG ++
Sbjct: 361 VDFGVQWGSQDGSVIQFGNSGAPIGGLLSAQEAAKDKTTTQKRYDPDTGAELPPIVTTES 420
Query: 242 ----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
GG + + ++ A++ + L+ P +T + Q A+ + G
Sbjct: 421 GDLAPMAAFLGGVKGAAAAIALGDWTALVTAVQANRNVNVLSTPNITVLDNQEANLSVGQ 480
Query: 292 QHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
+ T S + T+V D G+ L TP + + ++I+ VS+ A
Sbjct: 481 EVPVTTGSQTGSNNDNPFTTVERKDVGIQLKVTPQINEGDSVQMKIEQVVSQVADANGAV 540
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
D+ + R+ T+V + G I L GL+++ + ++ +P+L IP+LGALFR++ E
Sbjct: 541 DI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVPILGDIPVLGALFRSTNNQTE 599
Query: 407 ETEIFIAATPFLVK 420
+T + + P +++
Sbjct: 600 KTNLMVFIRPTILR 613
>gi|148874|gb|AAA24947.1| ORF 1 [Haemophilus influenzae]
Length = 371
Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + I + + + +F
Sbjct: 112 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 171
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 172 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 231
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
++ SV + + L TP + I L + + P V ++ S ++
Sbjct: 232 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 291
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP
Sbjct: 292 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 351
Query: 417 FLVKP 421
++K
Sbjct: 352 HILKA 356
>gi|152978367|ref|YP_001343996.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z]
gi|150840090|gb|ABR74061.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z]
Length = 482
Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats.
Identities = 51/245 (20%), Positives = 100/245 (40%), Gaps = 18/245 (7%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
+Q+ ++ I + + LK++G + + ++G S + +F
Sbjct: 195 EQIAIEARIVTMNDESLKELGVRWGMFEPTAGAHKVSGSLAANGFTDISNNLNVNFATAT 254
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ G ++ + L ALE+ + +A P L + ++AS G + Y
Sbjct: 255 MPAGSVALQVAKINGRLLDLELTALEQEKNVEIIASPRLLTTNKKAASIKQGTEIPYVVT 314
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRK 355
+ SV + + L TP + I + + + P V+ ++ S ++
Sbjct: 315 NGKNDTQSVEFREAVLGLEVTPHISQNNAILMDLTVSQNSPGNRVSYGENSEVVSIDKQE 374
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T V G TIVL G+ D + + +P+L IP++ LF N R++ E+ I T
Sbjct: 375 IKTQVFAKDGETIVLGGVFHDTVTKGSNKVPVLGDIPVIKHLFGNHSERRQKRELVIFVT 434
Query: 416 PFLVK 420
P ++K
Sbjct: 435 PRILK 439
>gi|161505946|ref|YP_001573058.1| outer membrane porin HofQ [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160867293|gb|ABX23916.1| hypothetical protein SARI_04127 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 400
Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats.
Identities = 81/406 (19%), Positives = 156/406 (38%), Gaps = 18/406 (4%)
Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK----AD 78
+ K AN ++ + + ++ + ++ P + + A
Sbjct: 1 MPAAQAGKAANVTLVVDDVPVVQVLQALA-EQERQNLVASPDVSGTLSLHLMDVPWRQAL 59
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V S + L + G + + Q + +D L++ + + +I +
Sbjct: 60 QTVASSAGLVL--RQEGNI-LHV----HSQAWQKEHHARQDAERLKLQANLPLENRSISL 112
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ + + + T N+ A + +K ++ +++ QV L
Sbjct: 113 QYADAAELAKAGEKLLSAKGTITVDKRTNRLLLRDNRTALAELEKWVSQMDLP-VAQVEL 171
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFS 255
I + L+++G + ++ + + V G ++
Sbjct: 172 AAHIVTINEKSLRELGVKWTLADAQQAGAVGDVTMLSSDLSVAAATSRVGFNIGRINGRL 231
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
+ L ALE+ + +A P L A Q AS G + Y+ S +GATSV + +
Sbjct: 232 LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLG 291
Query: 316 LHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ TPTVL GRI L+ I V V+ G++ + ++ +T VE+ SG T+ L G+
Sbjct: 292 MEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGI 351
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ ++ +PLL IP LG LFR+ E E+ + TP LV
Sbjct: 352 FSRKNKSGRDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 397
>gi|16131268|ref|NP_417850.1| protein required for the utilization of DNA as a carbon source;
fimbrial transporter homolog [Escherichia coli str. K-12
substr. MG1655]
gi|74313896|ref|YP_312315.1| outer membrane porin HofQ [Shigella sonnei Ss046]
gi|89110619|ref|AP_004399.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr.
W3110]
gi|157158971|ref|YP_001464845.1| outer membrane porin HofQ [Escherichia coli E24377A]
gi|170082908|ref|YP_001732228.1| fimbrial transporter [Escherichia coli str. K-12 substr. DH10B]
gi|218555936|ref|YP_002388849.1| outer membrane porin HofQ [Escherichia coli IAI1]
gi|229774932|ref|YP_690743.2| outer membrane porin HofQ [Shigella flexneri 5 str. 8401]
gi|238902482|ref|YP_002928278.1| putative fimbrial transporter [Escherichia coli BW2952]
gi|256025882|ref|ZP_05439747.1| outer membrane porin HofQ [Escherichia sp. 4_1_40B]
gi|293453697|ref|ZP_06664116.1| hofQ [Escherichia coli B088]
gi|307140075|ref|ZP_07499431.1| outer membrane porin HofQ [Escherichia coli H736]
gi|331644090|ref|ZP_08345219.1| protein transport protein HofQ [Escherichia coli H736]
gi|1170332|sp|P34749|HOFQ_ECOLI RecName: Full=Putative DNA transport protein HofQ; Flags: Precursor
gi|606325|gb|AAA58188.1| hopQ [Escherichia coli str. K-12 substr. MG1655]
gi|1789793|gb|AAC76416.1| protein required for the utilization of DNA as a carbon source;
fimbrial transporter homolog [Escherichia coli str. K-12
substr. MG1655]
gi|73857373|gb|AAZ90080.1| putative transport portein [Shigella sonnei Ss046]
gi|85676650|dbj|BAE77900.1| predicted fimbrial transporter [Escherichia coli str. K12 substr.
W3110]
gi|157081001|gb|ABV20709.1| protein transporter HofQ [Escherichia coli E24377A]
gi|169890743|gb|ACB04450.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr.
DH10B]
gi|218362704|emb|CAR00330.1| fimbrial transporter [Escherichia coli IAI1]
gi|238862385|gb|ACR64383.1| predicted fimbrial transporter [Escherichia coli BW2952]
gi|260447590|gb|ACX38012.1| type IV pilus secretin PilQ [Escherichia coli DH1]
gi|291321823|gb|EFE61254.1| hofQ [Escherichia coli B088]
gi|315137967|dbj|BAJ45126.1| outer membrane porin HofQ [Escherichia coli DH1]
gi|323939390|gb|EGB35601.1| type IV pilus secretin PilQ [Escherichia coli E482]
gi|331036384|gb|EGI08610.1| protein transport protein HofQ [Escherichia coli H736]
Length = 412
Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats.
Identities = 81/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + + + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +I ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|83647301|ref|YP_435736.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC
2396]
gi|83635344|gb|ABC31311.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC
2396]
Length = 647
Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats.
Identities = 76/458 (16%), Positives = 164/458 (35%), Gaps = 52/458 (11%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVL 70
+ L L + AN +I+ I + ++I L+ Q+ V ++D
Sbjct: 141 LVPILRPMVAKYGHLAGVAAANGLIISDHVNNIARIERIVSELDSPSNYQLEVIQLKDAW 200
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQAN---VILIGHDGKQMLNLDILIERDIAHLEMTL 127
V D + +P + G G AN V+ + +L D + L L
Sbjct: 201 VGD-MVKLLEELAPSEL-GKGAPKGPANKFSVVADERSNRLILKGDENFRDKMRLLIAKL 258
Query: 128 RRFIADSNIR-------VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+ A S + + +L G++ I ++ + + +
Sbjct: 259 DQPAAVSGTTKVINLRHADAEALAELLKGLMGEIAPAKGEGAAAAPGGGKVSIYPDEGLN 318
Query: 181 S-------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
+ + ++ L++ QV ++ I E+ + +Q+G Q + +
Sbjct: 319 ALVVRAEPSMMKEIEAIVQQLDVR-RAQVLIEAAIVEISDGLSRQLGVQMAAGDLTGKSG 377
Query: 228 KSFAADFGG------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
+ +F + ++ R + ++ AL +
Sbjct: 378 PATVTNFTNVGISASAILAAIASNSTPSIGGDIAAVAIGEAEGRKGWGALIQALGTSGQA 437
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLY-------KTVSSSTGATSVTTHDYGVVLHFTPTV 322
L+ P++ + + G + T +S T++ D G+ L TP++
Sbjct: 438 NLLSTPSIITMDNLQSEIIVGQNVPFRTGQTGTGTDGTSNPFTTIERQDVGLTLRVTPSI 497
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ L I+ E S + R+ T+V + TIVL GL+ ++ + +
Sbjct: 498 SDGDLVRLEIEQESSSIAPSNESASDIITNKRQIKTSVLADNAETIVLGGLMSENYKLSE 557
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+PLL IP+LGALFR+++ +++ + + P +++
Sbjct: 558 AKVPLLGDIPLLGALFRSTKREKDKQNLLVFLRPTILR 595
>gi|330839785|ref|YP_004414365.1| type II and III secretion system protein [Selenomonas sputigena
ATCC 35185]
gi|329747549|gb|AEC00906.1| type II and III secretion system protein [Selenomonas sputigena
ATCC 35185]
Length = 447
Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats.
Identities = 78/438 (17%), Positives = 174/438 (39%), Gaps = 23/438 (5%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+ F+ A P E A + I + + + L+ + ++
Sbjct: 3 ISPRVGAFFLAAWFAGALPAAASPLTLEVVDADVTALLTSIARLSGLDLILDDSVKGRIS 62
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI--LIERDIA 121
+ ++DV +P +A +++ + + + ++ G+ ++ + + + + D+
Sbjct: 63 LSLKDV---EPEEALMLISRAKGLAV--QHEGKVLLVRAAKEAAPFYRMHVLPVHHADLD 117
Query: 122 HLEMTLRRFIADSNIRV---EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
++ + ++ I + + + ++ + L G +
Sbjct: 118 TAFAAVKLSLGEAGISAIDENKKNGKEDISEQGLYRTGERLLIDRATNALLFYGTEEE-K 176
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ ++ V++ L++ +QV+L+ + + ++ K++G + P + + G
Sbjct: 177 ARAEAVLHSLDVPT-EQVSLEARVVALEKNAAKELGVDWDWSPLPIDPHGTSKSGAEGSR 235
Query: 239 VSEGGDFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
G+ R + + AL LA P +T + G+ A G
Sbjct: 236 RGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLARPNITTLQGREAVINIG 295
Query: 291 GQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
G ++ + + G++L +TP + G I R+ TEVS PV V+A
Sbjct: 296 GSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARVHTEVSSPVY-VDALKA 354
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
++ R ADTTV L G T+V+ GL+ + ++ +PLL IPILG F++ R + ++
Sbjct: 355 YKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIPILGTFFKSVRRTKTDS 414
Query: 409 EIFIAATPFLVKPVAMRD 426
EI I T +++ +
Sbjct: 415 EIMIFLTAHILRDTSPPA 432
>gi|126665040|ref|ZP_01736023.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17]
gi|126630410|gb|EBA01025.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17]
Length = 640
Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats.
Identities = 85/462 (18%), Positives = 159/462 (34%), Gaps = 70/462 (15%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN-----KVIILQVPVDVQDV 69
L L + ANA +++ I + +++ L+ +V ++Q+
Sbjct: 144 ILRPLVAKYGHLAAVPAANALIVSDHYANIQRIEQLVKELDSPAKYEVEVIQLDEAW--- 200
Query: 70 LVSDPTKADVVVHSPRTMYLFG--KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
V D + +P + G V + +V + +L D + L L
Sbjct: 201 -VGD-MVTLLQELAPDELARNGTENAVRKYSVTADERSNRLILRGDQNFRAKMRGLISQL 258
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV-----ELSETFLSQSGRNQYANSSSK 182
+ A T VL + + EL + + +
Sbjct: 259 DQPSASG-------GATKVLRLKNADAKSLADLLKGVMGELVRETAGDNRPSGQFAVFAD 311
Query: 183 KVMNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ +N L I G QV ++ I E+ ++ +Q+G Q + SS
Sbjct: 312 EGLNALVIRGEPSLMQEAEQIVMALDIRRAQVMIEAAIVEISENMGEQLGVQLAAGDESS 371
Query: 225 GPSKSFAADFG-----------------GKFVSEGGDFSVKGVL---DRFSFETVLHALE 264
G + G + G + + ++ ++ AL
Sbjct: 372 GGFPVLGTNLASGGMLGLNQVISAVLGDGTVPALAGGLTAGAGDRNRNGVTWGLLIQALS 431
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATSVTTHDYGVVLH 317
++A L+ P++ + Q + G ++T + + T++ D G+ L
Sbjct: 432 TSSAANLLSTPSIITLDNQESEIIVGQNVPFRTGQAAVSGEGLTNPFTTIERRDVGLTLK 491
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
TPT+ + G + L ++ V R+ TTV G TIVL GL+KD
Sbjct: 492 VTPTISADGLVRLVVEQTTENVVPTTVAGASDLITNKREIKTTVLADDGETIVLGGLMKD 551
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
D + K +PLL IP LG LF + +R + + + P +
Sbjct: 552 DYEVQKSKVPLLGDIPYLGRLFSSESESRVKRNLLVFLRPTI 593
>gi|217967423|ref|YP_002352929.1| type II and III secretion system protein [Dictyoglomus turgidum DSM
6724]
gi|217336522|gb|ACK42315.1| type II and III secretion system protein [Dictyoglomus turgidum DSM
6724]
Length = 1421
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 13/247 (5%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
SS + ++ L+ QV + V + EV R+ +K IG + S +
Sbjct: 1186 GPADQVSSVESMIAKLDKPTP-QVKIDVQVIEVSRENVKDIGIEW---------STGSIS 1235
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ G +++ + ALE R LA+P++T +SG A+ G
Sbjct: 1236 TGLQITANLGWQDLRVSIVNPGQISANIRALETQNKARILAQPSMTTLSG-KATRIMIGD 1294
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
+ + G V+ D G++L+ TPTV + G I I +VS V+ D+P
Sbjct: 1295 RVPLISYDAQGNRQVSFVDVGIILNVTPTVNADGTITANINPQVSTIQGYVS--DVPIIS 1352
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R+A T V L +G T+ L GLL+ + +PLL IPILG LF+ + + E E+ I
Sbjct: 1353 TREAQTIVNLKNGETLALGGLLRQEEIDSMSKVPLLGDIPILGELFKARKTQKVERELII 1412
Query: 413 AATPFLV 419
TP L+
Sbjct: 1413 LITPKLI 1419
>gi|205356871|ref|ZP_02343070.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205325673|gb|EDZ13512.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
Length = 389
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 73/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
Q + +D L + + + +I ++ + + + +
Sbjct: 69 HSQAWQKEHSARQDAERLRLQANLPLENRSINLQYADAGELAKAGEKLLSAKGTIMVDKR 128
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A + +K ++ +++ QV L I + L+++G + ++ ++
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELVAHIVTINEKSLRELGVKWTLADATQA 187
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
S V G ++ + L ALE+ + +A P L A
Sbjct: 188 GSVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 368 DGKEEERRELVVFITPRLV 386
>gi|399792|sp|P31700|GSPD1_ERWCH RecName: Full=General secretion pathway protein D; AltName:
Full=Pectic enzymes secretion protein outD; Flags:
Precursor
gi|148434|gb|AAA24831.1| secretory component [Erwinia chrysanthemi]
Length = 712
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 59/308 (19%), Positives = 113/308 (36%), Gaps = 33/308 (10%)
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
T+V+ G T++ + L T R+ ++V+N L+I QV +
Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITRPPDIMRDL------EQVINQLDIRRP-QVLV 402
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK-----------------FVSE 241
+ IAE++ +G Q + + + +
Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAMIGTDQFRSDGTLTTAYASAL 462
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ R ++ +L AL LA P++ + A+F G + T S +
Sbjct: 463 SNFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522
Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYR 352
T +V G+ L P + + L+I+ EVS G + + ++
Sbjct: 523 TVGSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFN 582
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R + V + + T+V+ GLL + +PLL IP LG+LFR+ + + +
Sbjct: 583 TRTVNNAVMVTNRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML 642
Query: 413 AATPFLVK 420
P +++
Sbjct: 643 FLRPTIIR 650
>gi|222083138|ref|YP_002542503.1| general secretion pathway protein D [Agrobacterium radiobacter K84]
gi|221727817|gb|ACM30906.1| general secretion pathway protein D [Agrobacterium radiobacter K84]
Length = 714
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 69/277 (24%), Positives = 111/277 (40%), Gaps = 13/277 (4%)
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
V E Q ++++ L++ QV ++ IAEV + + G +
Sbjct: 407 HTSVVADVENNALLISTTQREYEHIEQILKQLDV-MPTQVLIEAVIAEVTLNDQLKFGLR 465
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
G S +D G + L+AL T + ++ PT
Sbjct: 466 WFFENGKFGVGLSDLSDGSTGASFPG----FAWTFASSNVGATLNALSSITNVNIVSAPT 521
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIG 329
L A++ Q A+ G Q T S++ +S + D GV+L P V S GR+
Sbjct: 522 LMALNNQKATLQVGDQVPIVTQQSASTTSSNTAIVSSIDLKDTGVILTVLPRVNSSGRVM 581
Query: 330 LRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
L IQ EVS V + D P+ + RK T V + ++ L GL++ +P+L
Sbjct: 582 LDIQQEVSNVVKTTTSGIDSPTIQQRKLSTKVIVDDNESVALGGLIQQSNTLNHSQVPIL 641
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
K+PI G F+N +TE+ I P +V+ V
Sbjct: 642 GKMPIFGNAFKNKEDTINKTELIIFIKPRIVRDVRQA 678
>gi|315633544|ref|ZP_07888834.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393]
gi|315477586|gb|EFU68328.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393]
Length = 474
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 69/410 (16%), Positives = 143/410 (34%), Gaps = 30/410 (7%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHS---PRTM 87
A + + ++ + +++ ++ + + + + +V + + A + +
Sbjct: 36 KQAPLVPTLQQLALAQNVNLLIDDELQGTLTLKLDNVDLDQLFRSVAKIKQLDLWQEEGI 95
Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
Y K A + + + L E +A + L A ++ +L
Sbjct: 96 YYLSKRDTVAKFTGNMTEPQAIAALPSEEETSLATATIKLHFAKASEVMKSLTGGSGSML 155
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
D + + L + + K + +Q+ ++ I +
Sbjct: 156 SPNGSITFDDRSNLLLIQDEPKSIANLKKLIKELDKPI--------EQIAIEARIVTINA 207
Query: 208 DILKQIGFQHSITG---------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ LK +G + I + + G ++
Sbjct: 208 ESLKDLGVRWGIFNPTENAHKIAGSLAANGFDNIANQLNVNLPTATTPAGSIALQVAKIN 267
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+ L ALER + +A P L + +SAS G + Y V+ +G SV +
Sbjct: 268 GRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTELPYIMVNEKSGTQSVEFREA 327
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVL 370
+ L TP + +I L + + P V G ++ S ++ +T V G TIVL
Sbjct: 328 VLGLEVTPHISLDKQILLDLIVSQNAPGSRVAYGLGEVVSIDKQEINTQVFAKDGETIVL 387
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G+ D I + + +PLL IP + LF ++ E+ I TP +++
Sbjct: 388 GGVFHDTITKSLDKVPLLGDIPGIKHLFSKESDRHQKRELVIFVTPHILR 437
>gi|145300643|ref|YP_001143484.1| general secretion pathway protein D [Aeromonas salmonicida subsp.
salmonicida A449]
gi|1170051|sp|P45778|GSPD_AERSA RecName: Full=General secretion pathway protein D; Flags: Precursor
gi|516351|emb|CAA56668.1| ExeD [Aeromonas salmonicida]
gi|142853415|gb|ABO91736.1| general secretion pathway protein D [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 678
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 54/273 (19%), Positives = 100/273 (36%), Gaps = 25/273 (9%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ ++V+ L+I QV ++ I E+ +G Q + T
Sbjct: 330 TAQPDVMAELEQVVAKLDIR-RAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTDTN 388
Query: 232 ----------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
G G + ++ ++ AL +T L+ P
Sbjct: 389 LPIGSVAIAAKDYNENGTTTGLADLAKGFNGMAAGFYHGNWAALVTALSTSTKSDILSTP 448
Query: 276 TLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
++ + + ASF G + + +S ++ G L TP + + L
Sbjct: 449 SIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLTVTPQINEGDSVLL 508
Query: 331 RIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I+ EVS G P++ R V + SG T+VL GL+ + Q+ +PL
Sbjct: 509 NIEQEVSSVAQKQATGTADLGPTFDTRTIKNAVLVKSGETVVLGGLMDEQTQEKVSKVPL 568
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L IP+LG LFR++ + + + P +++
Sbjct: 569 LGDIPVLGYLFRSTNNTTSKRNLMVFIRPTILR 601
>gi|319785509|ref|YP_004144985.1| general secretion pathway protein D [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171397|gb|ADV14935.1| general secretion pathway protein D [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 707
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 64/279 (22%), Positives = 111/279 (39%), Gaps = 12/279 (4%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
V E +++++ +++ QV L+ IAEV + +
Sbjct: 399 PPAHATVVADIENNALLIQTTARDYERIEQILSKVDV-LPTQVMLEAVIAEVTLNDDLKY 457
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G + S S A G ++S + + L+AL T + ++
Sbjct: 458 GLRWFFENGGMKISVSDVAKGVAAAALPGFNWSYAT----DNIQVTLNALSSITDVNVIS 513
Query: 274 EPTLTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
PT+ A++ Q A G Q S+ SV D GV+L TP + + GR
Sbjct: 514 APTIMALNNQKAVLQVGDQVPIATRQVVDQTLGSSPVVSVEMKDTGVILTVTPRINNAGR 573
Query: 328 IGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
+ L I+ EVS + D P+ + RK T V + G ++ L GL++ + +P
Sbjct: 574 VMLDIEQEVSNVTKTTSSGIDSPTIQQRKIQTRVLVNDGESLALGGLIQSRNNVDRTQVP 633
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+L IPI+G F+ + TE+ I P +V+ +
Sbjct: 634 ILGDIPIIGNAFKQKTDSIGRTELIIFIRPHVVRDINEA 672
>gi|261493374|ref|ZP_05989900.1| competence protein E [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496640|ref|ZP_05993020.1| competence protein E [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261307843|gb|EEY09166.1| competence protein E [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261311018|gb|EEY12195.1| competence protein E [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 437
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 99/241 (41%), Gaps = 13/241 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFV 239
+Q+ ++ I + + L+++G + I +G + +
Sbjct: 185 TEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGRLEGNGLNDVTNNLNVNFPIT 244
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
++ + L ALE+ ++ +A P L + + AS G + Y +
Sbjct: 245 GGASAVLQVASINSRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYN 304
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + AT V + + L P + + +I L + + P + + + ++ +T
Sbjct: 305 TKSEATDVEFKEAVLGLEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQ 364
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V G TIVL G+ + Q+ ++ +P+L IP + LF +R + E+ I TP+++
Sbjct: 365 VFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIKRLFSQTRDKISKRELVIFVTPYIL 424
Query: 420 K 420
+
Sbjct: 425 Q 425
>gi|88861068|ref|ZP_01135703.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2]
gi|18643169|gb|AAL76242.1|AF441248_2 WmpD [Pseudoalteromonas tunicata]
gi|88816996|gb|EAR26816.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2]
Length = 689
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 60/286 (20%), Positives = 102/286 (35%), Gaps = 47/286 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ V+ L++ QV ++ I EV +GFQ + G
Sbjct: 341 EGVIAKLDVR-RAQVLVEAIIVEVFEGDGVNLGFQWINKQGGMLQFNNGTTVPVGSLGVA 399
Query: 242 G---------------------------------------GDFSVKGVLDRFSFETVLHA 262
G G + R + +L A
Sbjct: 400 GELARDKTIKKTVLGTNEGSANQYEETKEGDLTALASLLGGVNGLALGFARGDWGAILQA 459
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLH 317
+ T LA P++T + + AS G + T S + +V + G+ L
Sbjct: 460 VSTDTNSNILATPSVTTMDNEEASMIVGQEVPIITGSQTGNNNTNPFQTVERQEVGIKLK 519
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
TP + + L I+ EVS + R+ TTV G +VL GL+ +D
Sbjct: 520 VTPQINDGSAVQLTIEQEVSSVSGATAVD--ITINKREVTTTVLADDGAMVVLGGLIDED 577
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
+Q+ +PLL +PI+G LF+++ NR + + I P +++ A
Sbjct: 578 VQESVSKVPLLGDLPIIGHLFKSTSTNRRKRNLLIFIRPTIIRDSA 623
>gi|259982|gb|AAB24178.1| OutD=pectic enzyme secretion protein [Erwinia chrysanthemi,
Peptide, 712 aa]
Length = 712
Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats.
Identities = 59/308 (19%), Positives = 113/308 (36%), Gaps = 33/308 (10%)
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
T+V+ G T++ + L T R+ ++V+N L+I QV +
Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITRPPDIMRDL------EQVINQLDIRRP-QVLV 402
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK-----------------FVSE 241
+ IAE++ +G Q + + + +
Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAMIGTDQFRSDGTLTTAYASAL 462
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ R ++ +L AL LA P++ + A+F G + T S +
Sbjct: 463 SNFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522
Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYR 352
T +V G+ L P + + L+I+ EVS G + + ++
Sbjct: 523 TVGSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFN 582
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R + V + + T+V+ GLL + +PLL IP LG+LFR+ + + +
Sbjct: 583 TRTVNNAVMVTNRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML 642
Query: 413 AATPFLVK 420
P +++
Sbjct: 643 FLRPTIIR 650
>gi|261339183|ref|ZP_05967041.1| hypothetical protein ENTCAN_05409 [Enterobacter cancerogenus ATCC
35316]
gi|288319030|gb|EFC57968.1| general secretion pathway protein D [Enterobacter cancerogenus ATCC
35316]
Length = 643
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 58/265 (21%), Positives = 106/265 (40%), Gaps = 18/265 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFV 239
+KV++ L+I QV ++ IAEV+ +G Q + G G + + +
Sbjct: 331 EKVIDKLDIRRP-QVLVEAIIAEVQDGNGMDLGVQWTGKHGGVQFGATGLPISQVKNGTM 389
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ F ++ AL + L+ P++ + + ASF G + S
Sbjct: 390 KGTAFTGLATGFFNGDFGALVTALSTGSKNDILSTPSVVTLDNKEASFNVGQDVPVLSGS 449
Query: 300 SS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353
+ SV G L P + I L+I+ EVS P++
Sbjct: 450 QTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASATEDASLGPTFNT 509
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R + V + SG T+VL GL+++ ++ +PLL IP++G LFR + + + + +
Sbjct: 510 RTINNEVMVHSGQTVVLGGLMENVTKETVSKVPLLGDIPLVGQLFRYTSEDTSKRNLMVF 569
Query: 414 ATPFLVKPVAMRDLSRPDDHYSVED 438
+++ DD+YS
Sbjct: 570 IHTTVLRD---------DDNYSAAS 585
>gi|187731764|ref|YP_001882066.1| outer membrane porin HofQ [Shigella boydii CDC 3083-94]
gi|187428756|gb|ACD08030.1| protein transporter HofQ [Shigella boydii CDC 3083-94]
Length = 412
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 80/425 (18%), Positives = 155/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + + + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +I ++ + + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMIVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L++ V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|119476010|ref|ZP_01616362.1| type II and III secretion system protein [marine gamma
proteobacterium HTCC2143]
gi|119450637|gb|EAW31871.1| type II and III secretion system protein [marine gamma
proteobacterium HTCC2143]
Length = 630
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 80/442 (18%), Positives = 153/442 (34%), Gaps = 39/442 (8%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
M+ L A + P NA V+ I +++ L+K ++ DV+V
Sbjct: 142 MAEALRPLMSKDAVIKPYLATNALVLADHASNISSAQELIQQLDK----TSDSEI-DVIV 196
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQA---NVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
A+ ++ S T+ G A + + +L D + +L L
Sbjct: 197 LQHADAESILQSLSTLLPSGSQQASALNITISINERSNSILLAGDPAKRKQFRNLIKKLD 256
Query: 129 RFIADSNIR-------VEMVSDTVVLHGMVRTIQDSQR-------AVELSETFLSQSGRN 174
+ + V+ +L + ++IQ +Q+
Sbjct: 257 KPLDGQGNTDVVYLHYVDASEIVPILENLAKSIQSNQKDTDSNISIEASKSANALVINAP 316
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSG 225
++ K +++ L+I QV ++ + EVR ++ +G +
Sbjct: 317 PSILTTMKSIISQLDIR-RAQVMVEAILVEVRGELASDVGVTWITDPDNSIVGAVNTLGN 375
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ A G G G + + L AL L+ PT+ AI + A
Sbjct: 376 LPLANAPSDGSALPFSAGRGFTFGYFNGGDLQAALRALSATQNANILSTPTIVAIDNEEA 435
Query: 286 SFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
S G + T ++ T++ D G L TP + I L I +
Sbjct: 436 SLLVGQNVPFITGQATSSASSTNDPFTTIERQDIGTSLVVTPRINQGDSITLEIHQKTET 495
Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
++ R+ T + +V+ GL+ D+ ++ E +PLL IP LG+LF
Sbjct: 496 IAPSIDIASDIVTNKREIITKALIRDDQVLVIGGLINDEETEIIEKVPLLGDIPYLGSLF 555
Query: 399 RNSRFNREETEIFIAATPFLVK 420
+ + +T + + P ++K
Sbjct: 556 SSKGTSHTKTNLMVFIHPTILK 577
>gi|326796602|ref|YP_004314422.1| general secretion pathway protein D [Marinomonas mediterranea
MMB-1]
gi|326547366|gb|ADZ92586.1| general secretion pathway protein D [Marinomonas mediterranea
MMB-1]
Length = 623
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 83/474 (17%), Positives = 172/474 (36%), Gaps = 65/474 (13%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI-----SIGLNKVIILQ 61
+ + L P L + E NA +I+ I + + I S ++ +++
Sbjct: 129 AVASELVPILRPLIPQYGHLAAVNEVNALIISDHAANIRELEDIISRLDSTVEGQIRVVR 188
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG---------QANVILIGHDGKQMLNL 112
+ D + + S + G G + +I + +L
Sbjct: 189 LKHAWA----GDL----IEMLSQ---LVEGAEAGNGRKSSASNTSKIIADERTNRLVLKG 237
Query: 113 DILIERDIAHLEMTLRR-------------FIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
I L L + AD+ E+++ + ++ +
Sbjct: 238 KEATLDQIEDLIQQLDQPSDSTTRLKVIPLRYADAKTTAELITGLLSAEKTAQSSDRPES 297
Query: 160 AVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
+ ++ L+ + N + V++ L+I QV ++ I EV+ + +GFQ
Sbjct: 298 SFVQADESLNALVVSAEPNVMADILGVLSELDIP-RAQVLIEAIIVEVKMEGSDALGFQW 356
Query: 218 SIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE--------TV 259
G++ + S D V+ S + SF +
Sbjct: 357 LFGDTSDSTTPVLGTNFSSAGSSLTDIATSVVAGTPTLSNGITVGAASFNSDGDLNMAGI 416
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVV 315
L A+E + L+ P + + Q + G ++T S + + D G+
Sbjct: 417 LQAIESNSNSNLLSTPKIMTLDNQKSKILVGETRPFQTGGYSDSSSSAFVTTSREDIGLT 476
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
L TP + + + + + V ++ R+ +TTV + TIVL GL++
Sbjct: 477 LEVTPHINADNEVKMEVNQIVEAASPEASSLGT-ITTKREIETTVIAGNRKTIVLGGLIE 535
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
D++ ++++ +PLL IPILGALFR+ + + + + P +++ V D++
Sbjct: 536 DNVVEVEQKVPLLGDIPILGALFRSKSYENNKKNLLVFIRPTILRSAVEAEDMA 589
>gi|292489334|ref|YP_003532221.1| type II secretion system protein OutD [Erwinia amylovora CFBP1430]
gi|292898442|ref|YP_003537811.1| type II secretion system protein [Erwinia amylovora ATCC 49946]
gi|291198290|emb|CBJ45396.1| type II secretion system protein [Erwinia amylovora ATCC 49946]
gi|291554768|emb|CBA22567.1| Type II secretion system protein outD [Erwinia amylovora CFBP1430]
gi|312173499|emb|CBX81753.1| Type II secretion system protein outD [Erwinia amylovora ATCC
BAA-2158]
Length = 645
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 62/400 (15%), Positives = 133/400 (33%), Gaps = 24/400 (6%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
+ ++ AD + + G + + ++
Sbjct: 205 ASAPQVAEILNFINGDSKTAGSNKPFAK------AVADTRT---NAVLITGDELARQQLV 255
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
D + +L+ + + V + S+
Sbjct: 256 --DAARNLDEEKDRSSNSRVFYLKHAKAENLVEVLSGVSSNIQDKSESKSASPVAMSKDI 313
Query: 161 VELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V ++T+ + N + ++++N L+I+ QV ++ I EV+ +G Q
Sbjct: 314 VVKADTYTNSLIINAPPDVMGDLEEIINRLDIS-RAQVQVEAIIVEVQDADGLALGVQWF 372
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERATAIRTLA 273
+ A S + ++ + AL+ + LA
Sbjct: 373 NKNGGGTQFPASDAPVSNLIGSTIAEALSKTNGLAAGFYHGNWAGLFTALQTNSQNNILA 432
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIG 329
P++ + A FT G T + +T SV G+ L P + +
Sbjct: 433 TPSIVTLDNMEAEFTVGQDVPILTGTQTTNTDGVYNSVDRKSVGIKLKVKPQINKGDSVL 492
Query: 330 LRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ I+ EVS + + ++ R V + SG T+V+ GLL ++ +P+L
Sbjct: 493 MEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVLVESGKTVVVGGLLDTTHSNVESSVPVL 552
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
+IP++G LFR + + + + + P +++ DL+
Sbjct: 553 GQIPLIGRLFRYTSDKKSKRNLMLFIRPTIIRQQDKFDLT 592
>gi|332995712|gb|AEF05767.1| general secretion pathway protein D [Alteromonas sp. SN2]
Length = 680
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 71/330 (21%), Positives = 120/330 (36%), Gaps = 48/330 (14%)
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
++I+ E S + G S A E S + S ++V+ L+I
Sbjct: 290 SASIQAEEKSGSTNSRGS-SNRDVSIDAHEDSNALV--ITAEPDMMRSLEEVVRQLDIR- 345
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------- 241
QV ++ I EV +G Q + G V+
Sbjct: 346 RAQVQVEAIIVEVFEGDGTTLGVQWVSENGGGTQFSNGVIPVGSLAVALKEAEDDTDTEA 405
Query: 242 --------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
G + + + V+ A+ T LA P
Sbjct: 406 YVTDEGAVVRVTTTDEGDYTSLASLLGSANGLIAGIIDNGWGAVVQAVSTDTNSNVLATP 465
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
LT + + A F G + T +S+ +V + G+ L TP + + L
Sbjct: 466 HLTTMDNEEAYFIVGQEVPIITGTSTGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQL 525
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
I+ EVS + S R+ TTV + GGTIVL GL+ +D+Q+ +PLL
Sbjct: 526 LIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGD 583
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
IPI+G LF+++ ++ + + + P +V+
Sbjct: 584 IPIIGNLFKSTSTSKRKRNLMVFLKPTIVR 613
>gi|326796946|ref|YP_004314766.1| type II and III secretion system protein [Marinomonas mediterranea
MMB-1]
gi|326547710|gb|ADZ92930.1| type II and III secretion system protein [Marinomonas mediterranea
MMB-1]
Length = 398
Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats.
Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 5/230 (2%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
A Q+ ++ IA+V R K +G G ++ + +V+
Sbjct: 170 APVRQIEIQAHIAQVHRSAQKTLGVNWQTVIE-DGTRQALTGMVNLNAIGATSSLAVETT 228
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+L ALE +++P + GQSA SG + Y+ T+V
Sbjct: 229 RGSSRLSLLLDALETDGFANVISKPKIVTAEGQSARIESGTEIPYQVQH--DDVTTVEFR 286
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
G++L TP V G + L + + + +G +PS + +T VE+ G T+VL
Sbjct: 287 QAGLMLEVTPIVKEQGVLRLDL--NIHQDSVGEMVNGVPSLETNRLNTQVEVKDGETLVL 344
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G+ + + + +P+ +P+LGALFR+ E+ E+ + TP L++
Sbjct: 345 GGIFRQEKFENISKVPVFGDLPVLGALFRHRSDKTEKVELLVFITPKLLQ 394
>gi|259910041|ref|YP_002650397.1| putative outer membrane porin HofQ [Erwinia pyrifoliae Ep1/96]
gi|224965663|emb|CAX57195.1| outer membrane porin [Erwinia pyrifoliae Ep1/96]
Length = 406
Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/423 (17%), Positives = 158/423 (37%), Gaps = 35/423 (8%)
Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV---- 69
+ L S +V + P + A + + +++++ + + + + ++DV
Sbjct: 1 MALISPLAAV-QPPLTLAFDDAPVAQVLQALADYQQLNLMVAPGVEGHLSLRLKDVPWRQ 59
Query: 70 ----LVSDPTKADVVVHSPRTMYLFGK---NVGQANVILIGHDGKQMLNLDILIERDIAH 122
++ + + +F + Q + + +QML L I +
Sbjct: 60 ALQLVIKTGKL--TMEQQGNVLMVFPEGWQQEQQRKAAIRREEQEQMLPLFDRILTLVHA 117
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
++ + R+ ++ L ++ L++T +
Sbjct: 118 DAASVNTSLQRERARLMSARGSITLDSRTNSLLLRDTEKALAQT---------------E 162
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKFV 239
++ L++ +Q+ L I + + L+++G ++G + +
Sbjct: 163 HWVHQLDVPL-EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLRVDLATGR 221
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
G LD + L ALE +A P L Q+AS G + Y+ +
Sbjct: 222 PAGVVGFTLAKLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTEIPYEVST 281
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
++G+T++ + + + TP V + GRI L I V + ++ + ++ D
Sbjct: 282 GNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLTIDKQEID 341
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T V L G T+ L G+ + +P L IP+LG LFR+ ++ E+ I TP
Sbjct: 342 TQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRRELVIFITPR 401
Query: 418 LVK 420
L++
Sbjct: 402 LIR 404
>gi|332304529|ref|YP_004432380.1| general secretion pathway protein D [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332171858|gb|AEE21112.1| general secretion pathway protein D [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 690
Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats.
Identities = 94/503 (18%), Positives = 177/503 (35%), Gaps = 85/503 (16%)
Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL-QVPVDVQDVLVSDPTKADVVVH-- 82
L PI +V + + + ++ ++ ++ V + + D+V
Sbjct: 146 LAPILRQLNDQAGGGNVVSHDASNVMMLTGRAAVVNRLVEIIERVDKAGDEEVDIVKLKF 205
Query: 83 -SPRTMY----LFGKNVGQAN--------VILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
S + K+ G+ N V+ M++ DI + I +L + +
Sbjct: 206 ASASELVRIIDSINKSTGKTNASGKDAPRVVADDRTNSIMVSGDIKARQRIVNLIERMDQ 265
Query: 130 FIA-DSNIRVEMVSDTV------VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS- 181
+ + N RV + + VL G+ +IQ ++ S + ++ + A+ S
Sbjct: 266 ELETNGNTRVIFLKYSKAEELVKVLQGVSASIQAEEQGAAKSSSNSNRGDISIEAHEDSN 325
Query: 182 --------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGP 226
+ V+ L+I QV ++ I EV +G Q S +
Sbjct: 326 ALVITAQPDMMRSLEDVIRQLDIR-RAQVQVEAIIVEVFEGDGTTVGVQWASEDYGAQQF 384
Query: 227 SKSFAADFGGKFVSE-------------------------------------GGDFSVKG 249
S G V+ GG
Sbjct: 385 SNGNVVGIGSLAVAAEQASDTTTTTVGFDDDGDPYSFDETTEGDYTALASLLGGVNGFLV 444
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGA 304
+ + VL A+ T L+ P LT + + A F G + +++
Sbjct: 445 GAVKDGWGAVLQAVSTDTNSNVLSTPHLTTLDNEEAFFIVGQEVPIITGSTTGSNNTNPF 504
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
SV + G+ L TP + + L I+ EVS + + R+ T V +
Sbjct: 505 QSVERQEIGIKLKVTPQINEGNAVQLLIEQEVSSISGATSVDIL--INKREIKTNVIVDD 562
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VA 423
GGTIVL GL+ DD+Q+ +P+L IP +G LF+++ ++ + + + P +++ V
Sbjct: 563 GGTIVLGGLIDDDVQESVSKVPILGDIPFIGNLFKSTTTSKSKRNLMVFIRPTIIRDGVT 622
Query: 424 MRDLSRPDDHYSVEDDAKAFFFN 446
D+SR +Y + K
Sbjct: 623 ANDISRKKYNYIRAEQLKRQSEG 645
>gi|300718766|ref|YP_003743569.1| secretion and pilus transport protein [Erwinia billingiae Eb661]
gi|299064602|emb|CAX61722.1| secretion and pilus transport protein [Erwinia billingiae Eb661]
Length = 388
Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats.
Identities = 62/331 (18%), Positives = 129/331 (38%), Gaps = 10/331 (3%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV----LHGMVRTI 154
+++ +E++ + + + + + ++V R +
Sbjct: 57 LLVWPESRALEQQRKEALEQEHQREKAEKEQLLITEVLTLAHADASIVNSSLQSERARLM 116
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+ + T + A ++++ + L++ +Q+ L I + + L+++G
Sbjct: 117 SERGSVTVDARTNSLLLRDTRPALDATRRWVQALDVPL-EQIELAAHIVTINEESLRELG 175
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRT 271
+ T + + F + L D + L ALE+ +
Sbjct: 176 VRWGTTSNEQITQALRTSQFTVSLPVADAALTAGFTLARLDGKLLDLELSALEQENKLEI 235
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--G 329
+A P L Q AS G + Y+ S ++G T+V + + + TP V + GRI
Sbjct: 236 IASPRLFTSHQQPASIKQGTEIPYEVSSGTSGTTTVEFKEAVLGMEVTPVVQANGRILLK 295
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
L++ V + G+ + ++ T V L G T+ L G+ + + +PL+
Sbjct: 296 LQLTQNVPGRTMRSGEGEYLAIDKQEIQTQVTLKDGQTLALGGIFQRSTASGQRKVPLIG 355
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
IPILG+LFR ++ E+ I TP L++
Sbjct: 356 DIPILGSLFRYDINEQKRRELVIFITPRLIR 386
>gi|271501355|ref|YP_003334380.1| general secretion pathway protein D [Dickeya dadantii Ech586]
gi|270344910|gb|ACZ77675.1| general secretion pathway protein D [Dickeya dadantii Ech586]
Length = 713
Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats.
Identities = 58/308 (18%), Positives = 118/308 (38%), Gaps = 33/308 (10%)
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
T+++ G T++ + L T R+ ++V+N L+I QV +
Sbjct: 351 SSGGRTIMIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 403
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------- 241
+ IAE++ +G Q + + + +
Sbjct: 404 EAIIAEIQDADGLNLGIQWANNRAGMTQFTNTGIPISTAVIGTDQFRKDGTLTTAYASAL 463
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G + R ++ ++ AL + LA P++ + A+F G + T S +
Sbjct: 464 GSFNGITAGFYRGNWSMLMTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 523
Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
T +V G+ L P + + L+I+ EVS ++ + ++
Sbjct: 524 TVGSGNNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSANSSLGVTFN 583
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R + V + +G T+V+ GLL + +PLL IP+LG LFR+ + ++ + +
Sbjct: 584 TRTVNNAVMVSNGETVVVGGLLDKSTDENNSKVPLLGDIPVLGNLFRSKSQSVKKRNLML 643
Query: 413 AATPFLVK 420
P +++
Sbjct: 644 FLRPTIIR 651
>gi|157162867|ref|YP_001460185.1| outer membrane porin HofQ [Escherichia coli HS]
gi|254038556|ref|ZP_04872612.1| transporter HofQ [Escherichia sp. 1_1_43]
gi|157068547|gb|ABV07802.1| protein transporter HofQ [Escherichia coli HS]
gi|226839062|gb|EEH71085.1| transporter HofQ [Escherichia sp. 1_1_43]
gi|323934619|gb|EGB31019.1| type IV pilus secretin PilQ [Escherichia coli E1520]
Length = 412
Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats.
Identities = 80/425 (18%), Positives = 155/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + + + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +I ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L++ V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP+ G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|85860072|ref|YP_462274.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
gi|85723163|gb|ABC78106.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
Length = 601
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 69/345 (20%), Positives = 119/345 (34%), Gaps = 38/345 (11%)
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
++++ L L L L V+ D +
Sbjct: 234 EKNAIVMHVYPLQNASAEDLAKVLINLQPKETAPGSEKG-QPALSRNVQIQSDKATNSLI 292
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGS 222
Q V ++ I EV +G + ++ +
Sbjct: 293 ITASAEDYALLQGLIQKLDS--------SRPMVYIEALILEVNIVKDFNLGTEWRAMHDA 344
Query: 223 SSGPSKSFAADFGGKFVSEG-----------------------GDFSVKGVLDRFSFETV 259
SG + S GG G G G + +
Sbjct: 345 GSGGTGSLLFGSGGLGPPAGTYNILPDVTTPATYSSGFTFGILGTGITLGGITFQDIGAM 404
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVV 315
+ A++ T I L++P L + + A G Y T +T +S D GV
Sbjct: 405 IQAIKSDTDIHILSKPQLLTMDNEEAQIHVGKNVPYATRKETTTTNLDYSSYEYRDVGVS 464
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
L TP + S G + ++I EVS+ + +P+ R +TTV + T+V+ G++
Sbjct: 465 LKITPHINSEGFVRMKINQEVSQVT-EDSPTGLPTTNKRAVNTTVTIKDSETVVIGGMIG 523
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
D Q +PLL IP+LG LF++ NRE+T +++ TP +++
Sbjct: 524 DSTQLGTYKVPLLGDIPVLGWLFKSRSSNREKTNLYVFITPRVIR 568
>gi|13475694|ref|NP_107261.1| general secretion proteinD [Mesorhizobium loti MAFF303099]
gi|14026450|dbj|BAB53047.1| general secretion protein D [Mesorhizobium loti MAFF303099]
Length = 708
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 66/280 (23%), Positives = 114/280 (40%), Gaps = 13/280 (4%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
V E +++++ +++ QV L+ IAEV + +
Sbjct: 399 APAHATVVADVENNALLIQTTARDYQRIEQILSKVDV-LPTQVMLEAVIAEVTLNDDLKY 457
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G + + S + A G ++S + + L+AL + T + ++
Sbjct: 458 GLRWFFENGGTKVSVTDVAKAAAAATLPGFNWSYAT----DNIQVTLNALSKITDVNVIS 513
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPG 326
PT+ A++ Q A G Q T S SV D GV+L TP + + G
Sbjct: 514 APTIMALNNQKAILQVGDQVPILTQQSQDTGNGSAPIINSVQMKDTGVILTVTPRINNAG 573
Query: 327 RIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
R+ L IQ EVS ++ D P+ + RK T V + G ++ L GL++ + + +
Sbjct: 574 RVMLDIQQEVSNVTKTDSSDIDSPTIQQRKVQTRVLVNDGESLALGGLIQQNNSVDRSQV 633
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
P+L IPILG F+ TE+ I P +V+ +
Sbjct: 634 PILGDIPILGNAFKQKDDTIRRTELIIFIRPHVVRDINEA 673
>gi|117620160|ref|YP_855102.1| general secretion pathway protein D [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561567|gb|ABK38515.1| general secretion pathway protein D [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 677
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 54/276 (19%), Positives = 104/276 (37%), Gaps = 25/276 (9%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ ++V+ L+I QV ++ I E+ +G Q + T
Sbjct: 331 TAQPDVMAELEQVVAKLDIR-RAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTDTN 389
Query: 232 ADFGGKFVSE---------GGDFSVKGVLDR-------FSFETVLHALERATAIRTLAEP 275
G ++ G ++ + ++ ++ AL T L+ P
Sbjct: 390 LPIGSVAIAAKDYQKNGTTTGLAALAKDFNGMAAGFYKGNWAALVTALSTNTKNDILSTP 449
Query: 276 TLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
++ + + ASF G + + +S ++ G L TP + + L
Sbjct: 450 SIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLL 509
Query: 331 RIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I+ EVS G P++ R V + SG T+VL GL+ + Q+ +PL
Sbjct: 510 NIEQEVSSVAQTQAPGTSTLGPTFDTRTIKNAVLVKSGETVVLGGLMDEKTQEKVSKVPL 569
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
L IP+LG LFR++ + + + + P +++
Sbjct: 570 LGDIPVLGYLFRSTSNSTSKRNLMVFIRPTILRDAD 605
>gi|161616525|ref|YP_001590490.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|161365889|gb|ABX69657.1| hypothetical protein SPAB_04341 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 389
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 71/319 (22%), Positives = 129/319 (40%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
Q + +D L + + + +I ++ + + + +
Sbjct: 69 HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKR 128
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ + +K ++ +++ QV L I + L+++G + ++ ++
Sbjct: 129 TNRLLLRDNRAVLAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ V G + + L ALE+ + +A P L A
Sbjct: 188 GAVGDVTTLSSDLSVAAATSRVGFNIGRISGRLLDLELSALEQKQQLDIIASPRLLASHL 247
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386
>gi|39997126|ref|NP_953077.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens
PCA]
gi|39984016|gb|AAR35404.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens
PCA]
gi|298506139|gb|ADI84862.1| type IV pilus secretin lipoprotein PilQ [Geobacter sulfurreducens
KN400]
Length = 894
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 63/338 (18%), Positives = 128/338 (37%), Gaps = 27/338 (7%)
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRF------IADSNIRVEMVSDTVVLHGMVRTIQ 155
+ DG + + +A E L+R + + + ++
Sbjct: 563 MQRDGNIVQIRPKSKIQTLADEEQALKRAKERGMELKTEVFDINFAAVGDIVSQFNAVKS 622
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
+ + + T + A + + ++ L++ E QV ++ I E + +G
Sbjct: 623 ERGTISQDARTNRVIVKDIEPALAEMRILLKNLDLP-EKQVLIEARIVEATSTFTRDLGV 681
Query: 216 QHSITGSSSGP--------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
Q I + SG + A+ F S G + + L
Sbjct: 682 QWGIHSNDSGADIIRSVDAGFGGIVTPPPASGFPAATSSGGAVGISFAKMGSLQVDLRLS 741
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
A A ++ ++ P + ++ ++A + G Y+T S+ T + + L TP
Sbjct: 742 AAAVAGLVKIVSTPKVVTLNNKAAKISQGQSIPYQTTSAEG--TKTEFVEAALTLEVTPH 799
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ + G + ++I+ G P ++A T + + +G T V+ G+ D
Sbjct: 800 ITADGSVSMKIKAS----NNSAGTGSPPPINKKEATTELLVKNGETTVIGGIYVDSDTDE 855
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G+P L IP+LG LF+++ N+ +TE+ I TP +V
Sbjct: 856 DRGVPFLMDIPVLGWLFKSNTKNKTKTELLIFITPKIV 893
>gi|300313469|ref|YP_003777561.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum
seropedicae SmR1]
gi|300076254|gb|ADJ65653.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum
seropedicae SmR1]
Length = 674
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 61/280 (21%), Positives = 113/280 (40%), Gaps = 31/280 (11%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPS 227
A ++ +K++ ++IA QV ++ I E + +G + + G++ G S
Sbjct: 398 TDTLAALANVRKLIERIDIAAR-QVMIEARIVEADDSFARNLGVKLGLAARTQGAALGNS 456
Query: 228 KSFAADFGGKFVSEGG-----------------------DFSVKGVLDRFSFETVLHALE 264
+ + G+ G F++ + L ALE
Sbjct: 457 YASVGELSGQTPPAAGTYLREPALGLGAGALAGSAPGSFAFTLFNAAAQRFLNVELSALE 516
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ ++ P L Q+A G + Y+ +GAT+ + L TP +
Sbjct: 517 AEGRGKIVSSPRLVTADQQAALIEQGEEIPYQQSI-GSGATATAFKKANLKLEVTPQITP 575
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
G + L +V++ G + + T V++ GGT+V+ G+ + +
Sbjct: 576 DGNVILD--VDVNKDSRGSATPGGLAINTKHIKTKVQVEDGGTVVIGGIYTQTDNEHETR 633
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
+PLL +IP+LGALFR+ R++TE+ I TP +V P
Sbjct: 634 VPLLGEIPLLGALFRSRNKVRDKTELLIFLTPRIVAPPRP 673
>gi|77456876|ref|YP_346381.1| type II and III secretion system protein [Pseudomonas fluorescens
Pf0-1]
gi|77380879|gb|ABA72392.1| putative Flp pilus assembly protein, secretin [Pseudomonas
fluorescens Pf0-1]
Length = 422
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 81/284 (28%), Positives = 130/284 (45%), Gaps = 27/284 (9%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------ 240
QV + EV R LK+ G GS++ +
Sbjct: 130 PSQVQTDIRFVEVSRTKLKEAGTSIYGKGSNNFLFGAPGTVPNTGVTPGVVPLLNIDPRI 189
Query: 241 -------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
F++ F +++ALE + TLA P+L A+SGQSASF +GG+
Sbjct: 190 AAPSIPLANDMFNIVWGGGSSKFLGIVNALEGSGFAYTLARPSLVALSGQSASFLAGGEV 249
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMP 349
S+++ + S+ ++G+ L TPTV+S RI L++ EVSE + + +P
Sbjct: 250 PIPVPSANSNSYSIEYKEFGIRLTLTPTVVSNDRIALKVAPEVSELDYNNGVTIGGTKVP 309
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
++ +R+ DT++ L G + V++GL+ P L IP+LGA FRNS NREE E
Sbjct: 310 AFTIRRTDTSISLADGESFVISGLISTRNASEVNKFPGLGDIPVLGAFFRNSSINREERE 369
Query: 410 IFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFNRVN 449
+ + TP LV+P+A+ S P + + + +F N
Sbjct: 370 LLMIVTPHLVQPLAVNAPLPSLPGEKLRNYDPNWYRLYFLENGN 413
>gi|330886181|gb|EGH20082.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
mori str. 301020]
Length = 428
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 72 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 128
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 129 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 187
Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
D KQ+G + + ++SG + ++
Sbjct: 188 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 247
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + L A+E+ +++P + ++A G + Y+ SS+GAT+
Sbjct: 248 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 306
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V+ + + L TP + RI + ++ EP +P + + + V + G
Sbjct: 307 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 366
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP +
Sbjct: 367 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 418
>gi|304438627|ref|ZP_07398566.1| type II and III secretion system protein [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304368465|gb|EFM22151.1| type II and III secretion system protein [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 428
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 81/435 (18%), Positives = 163/435 (37%), Gaps = 26/435 (5%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
++R M L V+ + + + + + + ++ + V
Sbjct: 1 MKRWIIRAMFFGLLLFAAPVSAASVTVDVTGGDVRSVLLAAARMGNLPLIVDDSVTGTVT 60
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL---IGHDGKQMLNLDILIERDI 120
+ + + ++ + R ++L + G + + + +++ +
Sbjct: 61 AHLT----GEAEEVLHLIAAARGIHL--EQHGDVWLAVGTEVRDAQRRVHTYVVRYADPE 114
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+ + ++ QR + + T + +
Sbjct: 115 ELAHAANLSLTGEGKRAIVSKNNKDTSENEDSDSDTPQRVLVDTATNTLLFYGTESEARA 174
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---------SSSGPSKSFA 231
++++ L+ QV+L+ + V + K++G S + +SG
Sbjct: 175 VREIVFALD-TAPRQVSLEARVVAVSKRAAKELGIDWSWSSLPQYPDVSRDASGSWHVNG 233
Query: 232 ADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
+ G S G + F + + AL + LA P +T + G+ A
Sbjct: 234 RNAGMDGTSAPGIIRFGRGPEGMPYEFYYTAAIRALVSEGKAKMLARPNVTTVQGREALI 293
Query: 288 TSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
G + V++S T+ + + G++L +TP V + G I R+ TEVS PV V+
Sbjct: 294 NIGAEVPVPVVTTSNNVTTTGIEYREAGIILRYTPRVTADGNIVARVHTEVSTPVF-VDD 352
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
++ R ADTTV L +G T+V+ GL+ D + IP L +P+LGA FR R +R
Sbjct: 353 LKAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRTLAKIPFLGDLPLLGAFFRTVRTSR 412
Query: 406 EETEIFIAATPFLVK 420
ETE+ I T ++
Sbjct: 413 NETELMIFLTAHVLD 427
>gi|188532939|ref|YP_001906736.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99]
gi|188027981|emb|CAO95838.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99]
Length = 646
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 67/366 (18%), Positives = 130/366 (35%), Gaps = 18/366 (4%)
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
AD ++ L G + + +I D + +L+ + +
Sbjct: 233 AVADTRT---NSVLLTGDELARQQLI--DAARNLDEEKDHSSNSKVFYLKHAKAENLLEV 287
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAG 192
V + S+ V ++T+ + N + + ++N L+I+
Sbjct: 288 LSGVSGSIQDKAESKTASPVAMSKDIVVKADTYTNSLIINAPPDVMGDLEDIINRLDIS- 346
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----DFSV 247
QV ++ I EV+ +G Q + A S +
Sbjct: 347 RAQVQVEAIIVEVQDADGLALGVQWFNQHGGGTQFPAADAPVSHLIGSTVAETLSKTNGL 406
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---- 303
++ + +AL+ + LA P++ + A FT G T S +T
Sbjct: 407 AAGFYHGNWAGLFNALQTNSLNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGV 466
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVEL 362
SV G+ L P + + + I+ EVS + + ++ R V +
Sbjct: 467 FNSVDRKSVGIKLKVKPQINEGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVLV 526
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
SG T+V+ GLL ++ +PLL KIP +G LFR + + + + + P +++
Sbjct: 527 QSGKTVVVGGLLDTTHSNVESSVPLLGKIPFIGGLFRYTSDKKSKRNLMLFIRPTIIRQQ 586
Query: 423 AMRDLS 428
DL+
Sbjct: 587 DSFDLT 592
>gi|242237793|ref|YP_002985974.1| outer membrane porin HofQ [Dickeya dadantii Ech703]
gi|242129850|gb|ACS84152.1| type IV pilus secretin PilQ [Dickeya dadantii Ech703]
Length = 426
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 76/451 (16%), Positives = 157/451 (34%), Gaps = 48/451 (10%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M+ + T++ + + A+ P + + + + +++++ + +
Sbjct: 1 MKGMFIYGMTLVMAAQCADTWANAETPVSLAFDDVPVQRVLQALAEHQQLNLVIAPGVEG 60
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
V + ++ V R +G + +G+ ++
Sbjct: 61 NVSLTLERV-------------PWRQALDIILRMGDLTL---EREGRVLMVYPREHL--- 101
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
LR A+ + R + + L +R + ++ A L + + + +
Sbjct: 102 ----EMLRLQQAEEDERKQQQQALLNLSVTLRHAESTEVAASL--QSQRGTLLTERGSVT 155
Query: 181 SKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGS 222
K N L + QV L I + + LK +G +
Sbjct: 156 VDKRTNTLIVRDVSSALEQIRSWLDVLDKPLAQVQLAAHIVTISSEHLKALGVNWGLDAG 215
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTA 279
+ +F E + L+ + L ALE+ + +A P L
Sbjct: 216 DATKQALRMNNFNINLPVETPTVNAGFHLARLNGRLLDLELMALEQEDEVEIIASPRLFT 275
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
Q+AS G + Y+ S ++G+TS+ + + + TP +L G I L + + P
Sbjct: 276 AHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPRILQGGFITLNLLISQNMP 335
Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
I G+M + ++ T V + G TIVL G+ + + + +P L +P +G L
Sbjct: 336 GRSIKQGEGEMLAIDKQEIQTQVTVKDGETIVLGGIFQQQKNRTERKVPGLGALPGIGRL 395
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
F +S E+ I TP L++
Sbjct: 396 FSSSDRQNTRRELVIFITPTLIQASLPTKQP 426
>gi|320327874|gb|EFW83879.1| general secretion pathway protein D [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 775
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 63/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G +++ S R + + + L+ QV ++ I EV
Sbjct: 458 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 516
Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+G Q S T + + G + + + + L
Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
ALE + L+ P+L ++ Q A G S +T ++ V GV
Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 636
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
+L P + G + + IQ +VS +A P R T V SG T++L
Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAKSGQTVLLG 696
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + +
Sbjct: 697 GLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 754
Query: 432 DHYSV 436
D Y
Sbjct: 755 DDYRQ 759
>gi|191167908|ref|ZP_03029712.1| protein transporter HofQ [Escherichia coli B7A]
gi|190902081|gb|EDV61826.1| protein transporter HofQ [Escherichia coli B7A]
Length = 412
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 81/425 (19%), Positives = 153/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + + + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +I ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G + + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGVVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|322830997|ref|YP_004211024.1| type IV pilus secretin PilQ [Rahnella sp. Y9602]
gi|321166198|gb|ADW71897.1| type IV pilus secretin PilQ [Rahnella sp. Y9602]
Length = 420
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 75/358 (20%), Positives = 142/358 (39%), Gaps = 33/358 (9%)
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV----------EMVSDT 144
GQ +V L +Q L++ + + + L+ + + + +V + +
Sbjct: 60 GQMSVKLKDVPWQQALDIILQMNHLTSQLQGNVLLVSPEEDPQVVQQRIKDAADQQALQS 119
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---------- 194
++ V + LS S +Q N+S+ N L +
Sbjct: 120 PLISLTVPLQYADAKETALSLNAQKGSLLSQKGNASADTRTNTLLLRDTQAALDVVAPWV 179
Query: 195 --------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
QV L I + + L+++G + TG +F E F+
Sbjct: 180 KEMDLPLQQVQLAAHIVTMNSESLRELGVRWGFTGEEPITKAVRMNNFSMGMPVENPIFT 239
Query: 247 VKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ + L ALE+ + +A P L Q+AS G + Y+ S ++G
Sbjct: 240 AGFNLAHISGRILDLELTALEQEDKVDIIASPRLLTAHMQTASIKQGTEIPYQVSSGASG 299
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVE 361
+TS+ + + + P + GRI L +Q + P I + G+ + ++ T V
Sbjct: 300 STSIEFKEAVLGMEVMPKIQRDGRIQLALQISQNMPGRSIKQSEGEALAIDKQEIKTQVT 359
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G TIVL G+ + Q+ +P+L IP++G+LF++ N + E+ I TP L+
Sbjct: 360 VKNGETIVLGGIFQRKNQKTDTKVPVLGDIPVVGSLFKHQYTNEQRRELVIFITPTLI 417
>gi|71733584|ref|YP_275230.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71554137|gb|AAZ33348.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 759
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 63/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G +++ S R + + + L+ QV ++ I EV
Sbjct: 442 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 500
Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+G Q S T + + G + + + + L
Sbjct: 501 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 560
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
ALE + L+ P+L ++ Q A G S +T ++ V GV
Sbjct: 561 RALETNGRTQILSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 620
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
+L P + G + + IQ +VS +A P R T V SG T++L
Sbjct: 621 ILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSGQTVLLG 680
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + +
Sbjct: 681 GLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 738
Query: 432 DHYSV 436
D Y
Sbjct: 739 DDYRQ 743
>gi|302184967|ref|ZP_07261640.1| general secretion pathway protein D [Pseudomonas syringae pv.
syringae 642]
Length = 775
Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats.
Identities = 62/305 (20%), Positives = 107/305 (35%), Gaps = 20/305 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G +++ S R + + + L+ QV ++ I EV+
Sbjct: 458 GNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVQLT 516
Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+G Q S T + + G + + + + L
Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGV 314
ALE + L+ P+L ++ Q A G ++ T +SV GV
Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVEYVQTGV 636
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLA 371
+L P + G + + IQ +VS P R T V SG T++L
Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTTSGTNDANGNPRISTRSVATQVAAQSGQTVLLG 696
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + +
Sbjct: 697 GLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 754
Query: 432 DHYSV 436
D Y
Sbjct: 755 DDYRQ 759
>gi|85712761|ref|ZP_01043805.1| Type II secretory pathway [Idiomarina baltica OS145]
gi|85693401|gb|EAQ31355.1| Type II secretory pathway [Idiomarina baltica OS145]
Length = 560
Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats.
Identities = 62/276 (22%), Positives = 105/276 (38%), Gaps = 21/276 (7%)
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ L + + ++ L + QV L+ I EV Q G + + S
Sbjct: 258 QAGLVSVTAQPSKLRAVGQFLDNLQSRLQRQVILEARIVEVTLGDQYQQGIRWNELNMSG 317
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
F + D + F L L+ +++ L+ P +TA + Q
Sbjct: 318 RFDFGFNGSVPNDIAAATADGVFGLTFNSNRFTGFLELLQTQGSVQVLSNPRVTASNNQK 377
Query: 285 ASFTSGGQHLYKTVSSSTGATSVT------------THDYGVVLHFTPTVLSPGRIGLRI 332
A G Y T +S T+VT G+ L TP + G + L +
Sbjct: 378 AVIKIGEDEYYVTDVTSQTNTTVTQDALTSSNVDLTPFFSGISLDVTPQISDDGEVTLHV 437
Query: 333 QTEVSE-------PVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
V E IG +P +R++DT V SG +VL GL+++ + E
Sbjct: 438 HPSVVETKEQEKVITIGDETLRLPLARSNIRESDTIVRARSGEIVVLGGLMQNSTSENVE 497
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+PLL +P++G LF+N + + E+ I P ++
Sbjct: 498 KVPLLGDLPLVGNLFKNKSNDASKKELVILIKPTVI 533
>gi|167626227|ref|YP_001676727.1| type IV pili secretin component [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596228|gb|ABZ86226.1| type IV pili secretin component [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 582
Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 9/244 (3%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVS 240
V+N +++ DQV ++ I EV R ++GF + S K+F V
Sbjct: 335 NVINEIDVPN-DQVLIEARIVEVTRTSGLELGFNYTVSHPSGVDVGLKTFGTASESDTVV 393
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+ S E + ALE + +A P L + ++A G Y+ +
Sbjct: 394 ASTAKLAYTLAGGLSLEMEIRALENESLANQVASPHLVVANNETAFIKDGQDVPYQQA-T 452
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGL-----RIQTEVSEPVIGVNAGDMPSYRVRK 355
++GA SV + + L TP + G I + + S P R+
Sbjct: 453 ASGAASVAFQEAVLELQVTPQIAPDGNIVMEVLVTKNSVGASSGKTSTGEDLPPIIDKRE 512
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T V + G T+V+ G+ + + IP L IP LG LF N+ ++E+ I T
Sbjct: 513 VTTKVMVKDGETVVIGGIYSKKQIETRNKIPFLGDIPYLGYLFSNTVIGDTDSELLIFIT 572
Query: 416 PFLV 419
P ++
Sbjct: 573 PKII 576
>gi|332143347|ref|YP_004429085.1| general secretion pathway protein D [Alteromonas macleodii str.
'Deep ecotype']
gi|327553369|gb|AEB00088.1| general secretion pathway protein D [Alteromonas macleodii str.
'Deep ecotype']
Length = 681
Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats.
Identities = 69/330 (20%), Positives = 117/330 (35%), Gaps = 47/330 (14%)
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
++I+ E + S A E S + S ++V+ L+I
Sbjct: 290 SASIQAEEQGSGATSRRASSNREISIDAHEDSNAIV--ITAEPDMMRSLEEVVRQLDIR- 346
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------- 241
QV ++ I EV +G Q + G V+
Sbjct: 347 RAQVQVEAIIVEVFEGDGNTLGVQWVSEEGGGTQFNNGVIGVGSLAVALRQAEDRETTQT 406
Query: 242 --------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
GG + + + V+ A+ T LA P
Sbjct: 407 NITANGEVVETTDTIEGDFTALASLLGGANGLIAGVIENGWGAVVQAVSTDTNSNILATP 466
Query: 276 TLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
LT + + A F G + ++S +V + G+ L TP + + L
Sbjct: 467 HLTTMDNEEAFFIVGQEVPIITGTTTGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQL 526
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
I+ EVS + S R+ TTV + GGTIVL GL+ +D+Q+ +PLL
Sbjct: 527 LIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGD 584
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+LG LF+ + ++ + + + P +V+
Sbjct: 585 IPVLGHLFKTTSTSKRKRNLMVFLKPTIVR 614
>gi|82545746|ref|YP_409693.1| outer membrane porin HofQ [Shigella boydii Sb227]
gi|81247157|gb|ABB67865.1| putative transport portein [Shigella boydii Sb227]
Length = 412
Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats.
Identities = 81/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + + + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +I ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|313291988|gb|ADR51186.1| general secretion pathway protein D [Aeromonas veronii]
Length = 679
Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats.
Identities = 52/275 (18%), Positives = 97/275 (35%), Gaps = 24/275 (8%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S ++V+ L+I QV ++ I E++ +G Q +
Sbjct: 328 TAQPDVMSELEQVVAKLDIR-RAQVLVEAIIVEMQDGDGLSLGVQWGNANGGGTQFTNSG 386
Query: 232 ADFGGKFVSEGG---------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
G + + + + AL T L+ P+
Sbjct: 387 LPLGSAIAAGKDYQNGKTDTAAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPS 446
Query: 277 LTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+ + + ASF G + + +S ++ G L TP + + L
Sbjct: 447 IVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLN 506
Query: 332 IQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
I+ EVS G P++ R V + SG T+VL GL+ + ++ +PLL
Sbjct: 507 IEQEVSSVAQTQATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLL 566
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
IP+LG LFR++ + + + P +++
Sbjct: 567 GDIPVLGYLFRSTSNTTSKRNLMVFIRPTILRDAD 601
>gi|193061725|ref|ZP_03042822.1| protein transporter HofQ [Escherichia coli E22]
gi|193068780|ref|ZP_03049740.1| protein transporter HofQ [Escherichia coli E110019]
gi|194427057|ref|ZP_03059609.1| protein transporter HofQ [Escherichia coli B171]
gi|194435813|ref|ZP_03067916.1| protein transporter HofQ [Escherichia coli 101-1]
gi|253771782|ref|YP_003034613.1| outer membrane porin HofQ [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254163319|ref|YP_003046427.1| outer membrane porin HofQ [Escherichia coli B str. REL606]
gi|256020735|ref|ZP_05434600.1| outer membrane porin HofQ [Shigella sp. D9]
gi|260846175|ref|YP_003223953.1| putative fimbrial transporter HofQ [Escherichia coli O103:H2 str.
12009]
gi|260857498|ref|YP_003231389.1| putative fimbrial transporter HofQ [Escherichia coli O26:H11 str.
11368]
gi|260870117|ref|YP_003236519.1| putative fimbrial transporter HofQ [Escherichia coli O111:H- str.
11128]
gi|332281935|ref|ZP_08394348.1| outer membrane porin HofQ [Shigella sp. D9]
gi|192932515|gb|EDV85112.1| protein transporter HofQ [Escherichia coli E22]
gi|192957856|gb|EDV88299.1| protein transporter HofQ [Escherichia coli E110019]
gi|194415018|gb|EDX31288.1| protein transporter HofQ [Escherichia coli B171]
gi|194425356|gb|EDX41340.1| protein transporter HofQ [Escherichia coli 101-1]
gi|242378917|emb|CAQ33712.1| protein involved in utilization of DNA as a carbon source
[Escherichia coli BL21(DE3)]
gi|253322826|gb|ACT27428.1| type IV pilus secretin PilQ [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253975220|gb|ACT40891.1| predicted fimbrial transporter [Escherichia coli B str. REL606]
gi|253979376|gb|ACT45046.1| predicted fimbrial transporter [Escherichia coli BL21(DE3)]
gi|257756147|dbj|BAI27649.1| predicted fimbrial transporter HofQ [Escherichia coli O26:H11 str.
11368]
gi|257761322|dbj|BAI32819.1| predicted fimbrial transporter HofQ [Escherichia coli O103:H2 str.
12009]
gi|257766473|dbj|BAI37968.1| predicted fimbrial transporter HofQ [Escherichia coli O111:H- str.
11128]
gi|323376744|gb|ADX49012.1| type IV pilus secretin PilQ [Escherichia coli KO11]
gi|323959609|gb|EGB55261.1| type IV pilus secretin PilQ [Escherichia coli H489]
gi|323969989|gb|EGB65264.1| type IV pilus secretin PilQ [Escherichia coli TA007]
gi|332104287|gb|EGJ07633.1| outer membrane porin HofQ [Shigella sp. D9]
Length = 412
Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats.
Identities = 81/425 (19%), Positives = 155/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S + N+ + I ++ + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAGLITRQEDNILSVHSIAWQNNN--------IARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +I ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|218550647|ref|YP_002384438.1| outer membrane porin HofQ [Escherichia fergusonii ATCC 35469]
gi|218358188|emb|CAQ90835.1| fimbrial transporter [Escherichia fergusonii ATCC 35469]
Length = 426
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 83/429 (19%), Positives = 154/429 (35%), Gaps = 31/429 (7%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ ++ L + P K A ++ + ++ + I+ P
Sbjct: 12 EKKMKQWIAAILMMALPVA---QAAKPAKVTLVVDDAPVAQVLQALA-EQERQNIVVSPD 67
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQA----NVILIGHDGKQMLNLDIL 115
V + VV S L + G + + + +
Sbjct: 68 VSGLVSLHLIDVPWKQALQTVVKSAG---LVSRQEGNILHIHSAAWQNENAARQEAEQVR 124
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
+ + AD+ + + G + + R + N+
Sbjct: 125 RLASLPVEHRAIALQYADAAELAKAGGKLLSAKGSMTVDTRTNRLL---------LRDNK 175
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
A ++ + ++ +++ QV L I + L+++G + + +
Sbjct: 176 TALAALEHWISEMDVP-VGQVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTTLS 234
Query: 236 GKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
V G ++ + L ALE+ + +A P L A Q AS G +
Sbjct: 235 SDLAVATATTQVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSE 294
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPS 350
Y+ S +GATSV + + + TPTVL GRI L+ I V V+ + G++ +
Sbjct: 295 IPYQVSSGESGATSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGEVLT 354
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++ +T VE+ SG T+ L G+ + K+ IPLL IP LG LF + E E+
Sbjct: 355 IDKQEIETQVEVKSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENERREL 414
Query: 411 FIAATPFLV 419
+ TP LV
Sbjct: 415 VVFITPRLV 423
>gi|83749638|ref|ZP_00946621.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
gi|83723699|gb|EAP70894.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
Length = 401
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 82/333 (24%), Positives = 150/333 (45%), Gaps = 32/333 (9%)
Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
A +AA + + ++++ + K ++Q+P V++ V +P ++ S
Sbjct: 74 AATAEASRESAAKGPNCTGAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVS 133
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142
P+T+YL G+ VG N+I+ G G +D+ + D L+ TLR + + N++V +
Sbjct: 134 PQTLYLLGQEVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQSTLRTLMPGAKNVQVSAAA 192
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYANSS 180
D++VL G V +Q+ ++++ F+ G A
Sbjct: 193 DSLVLGGSVSDSVQAQKVLDIANAFVMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPR 252
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
S +++N++ + QV L+V +AEV + ++ Q+G ++ +G S+ F+S
Sbjct: 253 SPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNV----NGAFGSWTFGALANFLS 308
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
D + + L A + ++ LAEP+L AISGQ ASF +GG+
Sbjct: 309 GSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVSQG 368
Query: 301 STG----ATSVTTHDYGVVLHFTPTVLSPGRIG 329
+ + +GV L FTPTV+ GRI
Sbjct: 369 AATNGVANIILXEETFGVGLRFTPTVMEKGRIT 401
>gi|307555474|gb|ADN48249.1| protein transport protein HofQ precursor [Escherichia coli ABU
83972]
Length = 377
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + NI ++ + + +
Sbjct: 57 HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 116
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ ++ +++ QV L I + L+++G + ++ +
Sbjct: 117 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 175
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G + G ++ + L ALE+ + +A P L A
Sbjct: 176 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 235
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 236 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 295
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 296 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 355
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 356 DGKEDERRELVVFITPRLV 374
>gi|330830590|ref|YP_004393542.1| general secretion pathway protein D [Aeromonas veronii B565]
gi|328805726|gb|AEB50925.1| General secretion pathway protein D [Aeromonas veronii B565]
Length = 679
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 52/275 (18%), Positives = 97/275 (35%), Gaps = 24/275 (8%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S ++V+ L+I QV ++ I E++ +G Q +
Sbjct: 328 TAQPDVMSELEQVVAKLDIR-RAQVLVEAIIVEMQDGDGLSLGVQWGNANGGGTQFTNSG 386
Query: 232 ADFGGKFVSEGG---------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
G + + + + AL T L+ P+
Sbjct: 387 LPLGSAIAAGKDYQNGKTDTAAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPS 446
Query: 277 LTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+ + + ASF G + + +S ++ G L TP + + L
Sbjct: 447 IVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLN 506
Query: 332 IQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
I+ EVS G P++ R V + SG T+VL GL+ + ++ +PLL
Sbjct: 507 IEQEVSSVAQTQATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLL 566
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
IP+LG LFR++ + + + P +++
Sbjct: 567 GDIPVLGYLFRSTSNTTSKRNLMVFIRPTILRDAD 601
>gi|224585282|ref|YP_002639081.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224469810|gb|ACN47640.1| type II secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
Length = 379
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 73/319 (22%), Positives = 132/319 (41%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
Q + ++D L + + + +I ++ + + + +
Sbjct: 59 HSQAWQKEHSAQQDAERLRLQANLPLENRSINLQYADAGELAKAGEKLLSAKGTIMVDKR 118
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A + +K + +++ QV L I + L+++G + ++ ++
Sbjct: 119 TNRLLLRDNRAALAELEKWGSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 177
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ A V G ++ + L ALE+ + +A P L A
Sbjct: 178 GAVGDVATLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 237
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 238 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 297
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+
Sbjct: 298 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 357
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 358 DGKEDERRELVVFITPRLV 376
>gi|238758913|ref|ZP_04620085.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
gi|238702870|gb|EEP95415.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
Length = 641
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 110/288 (38%), Gaps = 16/288 (5%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
TI+ ++ L T + +V++ L++ QV ++ I E +
Sbjct: 305 TIRAHEQTNALVITAAPGLMKEL------SQVIDKLDVR-RAQVLVEAIIVETQNGEGLN 357
Query: 213 IGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
+G Q + G + S A + + + +++ + AL +
Sbjct: 358 LGIQWANKFLGGVNFIKNSGATASSSEKGIPMMIAGLTAGFYKGNWDGLFSALATNSNNN 417
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPG 326
LA P++ + A F G + T + +T S++ GV+L P +
Sbjct: 418 ILATPSIVTLDNMEAEFNVGQEVPVLTSTQTTATDKVYNSISRQPVGVMLKVKPQINQGD 477
Query: 327 RIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
+ L I+ EVS + + R + V + SG T+V+ GLL ++
Sbjct: 478 SVLLEIRQEVSSVADSTDTNTNNLGSVFNKRVVNNAVLVRSGETVVVGGLLDKKTNRIIN 537
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
+P L IP++G LFR ++ E + + + P +++ V L
Sbjct: 538 KVPFLGDIPLIGGLFRQTKEKVERSNLILFIKPTILREVDDYSLVTSG 585
>gi|313673420|ref|YP_004051531.1| type ii and iii secretion system protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940176|gb|ADR19368.1| type II and III secretion system protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 786
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 22/286 (7%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
V+ G V + + + S +F+ ++ A K V+ ++ QVT++ + EV
Sbjct: 507 VVKG-VLSPRGKVQVESKSNSFVVTDTKDSIAKV--KNVLKEVDKPTP-QVTIEARVVEV 562
Query: 206 RRDILKQIGFQHSITG-------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
G + +G + + + + ++ + +
Sbjct: 563 SDSNDLAYGIKWGANTKINRTSINFPNSIGINGDAGGYMVNLPIGAPTGALALTLGNISN 622
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
F+ + + A+E +T++ P +T + Q A SGG+ + S T T D
Sbjct: 623 TFNIDMAISAMESRNKAKTISSPKITTLDNQEAEIKSGGKAIIVP---SGDNTQSQTIDV 679
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
G+ L P + + I + I+ E S G +G +KA T V L +G T V+ G
Sbjct: 680 GIKLKVKPHITANNMIFMEIEVEKSSL--GAVSGTNAETLEKKAKTQVLLANGETTVIGG 737
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ +D+ ++K +P LSKIP+LG LFRN+ R + E+ + TP +
Sbjct: 738 IYEDEQNEIKNEVPGLSKIPLLGWLFRNNIERRAKKELLVFITPRI 783
>gi|284923383|emb|CBG36477.1| protein transport protein [Escherichia coli 042]
Length = 386
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 71/319 (22%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + NI ++ + + +
Sbjct: 66 HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|66046370|ref|YP_236211.1| type II and III secretion system protein:NolW-like [Pseudomonas
syringae pv. syringae B728a]
gi|63257077|gb|AAY38173.1| type II and III secretion system protein:NolW-like [Pseudomonas
syringae pv. syringae B728a]
Length = 776
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 18/260 (6%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244
QV ++ I EV+ +G Q S T + + G +
Sbjct: 503 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 562
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298
+ + + L ALE + L+ P+L ++ Q A G
Sbjct: 563 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 622
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKA 356
++ T +SV GV+L P + G + + IQ +VS+ +A P R
Sbjct: 623 NTGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADSSGTTDANGNPRISTRSV 682
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T V SG T++L GL+K D + +P L +IP L LF N+ +++ TE+ + TP
Sbjct: 683 ATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITP 742
Query: 417 FLVKPVAMRDLSRPDDHYSV 436
++ + + D Y
Sbjct: 743 RVI--TSSSQARQVTDDYRQ 760
>gi|260912709|ref|ZP_05919195.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325]
gi|260633087|gb|EEX51252.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325]
Length = 431
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 17/244 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKF 238
+Q+ ++ I + + LK++G + + S S+ +F
Sbjct: 185 EQIAIEARIVTISDESLKELGVRWGLLNPTELSHRVAGSLDANGFSQISEQLNVNFATSI 244
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER + +A P L + +SAS G + Y
Sbjct: 245 TPAGSLALQLAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVT 304
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
S SV + + L TP + +I L + + P V +G++ S ++
Sbjct: 305 SGKNETQSVEFREAVLGLDVTPHISKDNQILLDLVVSQNSPGARVAYGSGEIVSIDKQEI 364
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D + + + +P+L IP++ LFR ++ E+ I TP
Sbjct: 365 NTQVVAKDGETIVLGGVFHDSMTKGVDKVPVLGDIPMIKHLFRKQNERHQKRELVIFVTP 424
Query: 417 FLVK 420
++K
Sbjct: 425 RILK 428
>gi|15603090|ref|NP_246162.1| ComE [Pasteurella multocida subsp. multocida str. Pm70]
gi|12721580|gb|AAK03309.1| ComE [Pasteurella multocida subsp. multocida str. Pm70]
Length = 444
Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats.
Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 17/249 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGKF 238
+Q+ ++ I + + L+++G + + S +F
Sbjct: 181 EQIAIEARIVTMTDESLQELGVRWGLFQATEQAHTIAGSLAANGFSNIENQLNVNFSTNS 240
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G ++ + L ALER I +A P L + +SAS G + Y
Sbjct: 241 APVGSIALQLAKINGRLLDLELTALEREKHIEIIASPRLLTTNKKSASIKQGTEIPYVMK 300
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
+ SV + + L TP + I L + + V + G++ S ++
Sbjct: 301 RGKDKSESVEFREAVLGLDVTPHISKDNTILLDLLITQNTLGAPVVYDKGEIVSIDKQEI 360
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ D + + +PLL +P+L +F ++ E+ I TP
Sbjct: 361 NTQVVAQDGETIVLGGVFHDTMTKGVNKVPLLGDLPLLKHVFSQKTERHQKRELVIFVTP 420
Query: 417 FLVKPVAMR 425
++KP
Sbjct: 421 HIIKPSQGS 429
>gi|307545360|ref|YP_003897839.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
gi|307217384|emb|CBV42654.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
Length = 749
Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats.
Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 14/250 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV ++ I EVR G Q + + S A+ G + G G
Sbjct: 480 PRQVQIETRILEVRLTGALNQGVQWYLGQLAGNASNPSVANASGSQGALGAGGVSLGGSS 539
Query: 253 ------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSS 301
+ + L AL+ + L+ P+L ++ Q A G +
Sbjct: 540 MFYSFVGDNLQVALRALQTRGLTQVLSAPSLVVLNNQQAQIQVGDNIPVNQTTVNTADAD 599
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTT 359
T +SV GV+L P + G + + IQ +VS+ + P R T
Sbjct: 600 TTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADDNAAGSTASNPRISTRAVSTQ 659
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V + SG T++L GL++ + + + +P LS IP LG LF + +R+ TE+ + TP +V
Sbjct: 660 VAVQSGQTVLLGGLIQQNNAESETRVPGLSSIPGLGRLFGSEARDRDRTELIVLITPKVV 719
Query: 420 -KPVAMRDLS 428
PV R+++
Sbjct: 720 NNPVQAREIT 729
>gi|307131443|ref|YP_003883459.1| general secretion pathway protein D [Dickeya dadantii 3937]
gi|306528972|gb|ADM98902.1| General secretion pathway protein D [Dickeya dadantii 3937]
Length = 696
Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats.
Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 16/262 (6%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ A + ++ L++ +QV ++ + EV++ +G + G S
Sbjct: 384 SASPAAMQQAVSIIQQLDVR-HEQVLVEAIVVEVQQAEGLNLGIAWG--NKNYGGSNFNG 440
Query: 232 ADFGGKFVSEG-------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ G F G + S+ ++ +ALE LA P++ +
Sbjct: 441 VNVGNGFNQANPLVDALKGTEGLIAGFYHGSWGSLFNALESNKRNNILATPSVVTLDNHR 500
Query: 285 ASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
A F G T S +T +V G+ P + G I L I E+S
Sbjct: 501 AEFNVGQDVPILTGSQTTNNDNIFNTVQRRTIGIKFSILPRINQSGTILLNISQEISSLS 560
Query: 341 IGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
+ +R + V++ T+V+ GLL D+ ++ +PLL IP LG LF
Sbjct: 561 DTSQVNSNLGSVFNIRTVNNVVQVQDDETVVIGGLLDDEKKETANKVPLLGDIPWLGNLF 620
Query: 399 RNSRFNREETEIFIAATPFLVK 420
R + N ++ + + P +++
Sbjct: 621 RYTSQNNDKRNLMLFIRPRIIR 642
>gi|320197345|gb|EFW71960.1| Type IV pilus biogenesis protein PilQ [Escherichia coli WV_060327]
Length = 386
Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats.
Identities = 71/319 (22%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + NI ++ + + +
Sbjct: 66 HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKAALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTALGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|330938634|gb|EGH42200.1| type II and III secretion system protein:NolW-like protein
[Pseudomonas syringae pv. pisi str. 1704B]
Length = 554
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 51/257 (19%), Positives = 108/257 (42%), Gaps = 23/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------SK 228
++++ L+I QV ++ I E D KQ+G + + ++SG +
Sbjct: 290 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAG 348
Query: 229 SFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ + + + V + + L A+E+ +++P +
Sbjct: 349 NTSGNLTSNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 408
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP
Sbjct: 409 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 467
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR
Sbjct: 468 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 527
Query: 402 RFNREETEIFIAATPFL 418
+ ++E+ + TP +
Sbjct: 528 VVSESKSELLVFLTPRI 544
>gi|289648905|ref|ZP_06480248.1| general secretion pathway protein D [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330987884|gb|EGH85987.1| general secretion pathway protein D [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 775
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G +++ S R + + + L+ QV ++ I EV
Sbjct: 458 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 516
Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+G Q S T + + G + + + + L
Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
ALE + L+ P+L ++ Q A G S +T ++ V GV
Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 636
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
+L P + G + + IQ +VS +A P R T V SG T++L
Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSGQTVLLG 696
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ + +
Sbjct: 697 GLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQVT 754
Query: 432 DHYSV 436
D Y
Sbjct: 755 DDYRQ 759
>gi|320323732|gb|EFW79816.1| general secretion pathway protein D [Pseudomonas syringae pv.
glycinea str. B076]
Length = 775
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 63/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G +++ S R + + + L+ QV ++ I EV
Sbjct: 458 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 516
Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+G Q S T + + G + + + + L
Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
ALE + L+ P+L ++ Q A G S +T ++ V GV
Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 636
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
+L P + G + + IQ +VS +A P R T V SG T++L
Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSGQTVLLG 696
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + +
Sbjct: 697 GLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 754
Query: 432 DHYSV 436
D Y
Sbjct: 755 DDYRQ 759
>gi|218691667|ref|YP_002399879.1| outer membrane porin HofQ [Escherichia coli ED1a]
gi|218429231|emb|CAR10041.1| fimbrial transporter [Escherichia coli ED1a]
Length = 412
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 79/413 (19%), Positives = 156/413 (37%), Gaps = 21/413 (5%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISI--GLNKVIILQVPVDVQDVLVSDPTK 76
+ + +P ++ A + + ++ + + + K+ ++ P V +
Sbjct: 6 AALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQVLAEQEKLNLVVSPDVSGTVSLHLTDV 65
Query: 77 -----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
VV S L + G + + D + ++ +
Sbjct: 66 PWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQEAEQTRAQANLPL 117
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
+ NI ++ + + + T N+ A S+ ++ ++ +++
Sbjct: 118 ENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSTLEQWVSQMDLP 177
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK--- 248
QV L I + L+++G + ++ + G +
Sbjct: 178 -VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATATTHIGFNI 236
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
G ++ + L ALE+ + +A P L A Q AS G + Y+ S +GATSV
Sbjct: 237 GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVE 296
Query: 309 THDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
+ + + TPTVL GRI L+ I V V+ G++ + ++ +T VE+ SG
Sbjct: 297 FKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGE 356
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
T+ L G+ + ++ +PLL IP G LF + E E+ + TP LV
Sbjct: 357 TLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFHHDGKEDERRELVVFITPRLV 409
>gi|330444859|ref|ZP_08308514.1| general secretion pathway protein D [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489169|dbj|GAA03011.1| general secretion pathway protein D [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 677
Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats.
Identities = 59/316 (18%), Positives = 119/316 (37%), Gaps = 48/316 (15%)
Query: 151 VRTIQDSQRAVELS--ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
++ + + ET + + +++ L+I QV ++ I EV+
Sbjct: 303 AKSGSSKDEVMISAHPETNALIISAPSDVMNRLESIISQLDIR-RAQVHIEAMIVEVQEG 361
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------------------------- 241
G Q + A GG ++
Sbjct: 362 AGVDFGVQWGSQDGGVIQFGNSGAPIGGLLSAQEAAKDKTTTQNRTDPNTGAQLPPIVTT 421
Query: 242 ------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
GG + + ++ A++ + L+ P +T + Q A+ +
Sbjct: 422 ESGDLAPMAAFLGGVKGAAAAISMGDWTALVTAVQANRNVNVLSTPNITVLDNQEANLSV 481
Query: 290 GGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
G + T SS+ T+V D G+ L TP + + ++I+ VS+
Sbjct: 482 GQEVPVTTGSSTGSNNDNPFTTVERKDVGIQLKVTPQINEGDSVQMKIEQVVSQVADANG 541
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
A D+ + R+ T+V + G I L GL+++ + ++ +P+L IP+LGALFR++
Sbjct: 542 AVDI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVPILGDIPVLGALFRSTNDQ 600
Query: 405 REETEIFIAATPFLVK 420
E+T + + P +++
Sbjct: 601 TEKTNLMVFIRPTILR 616
>gi|291614284|ref|YP_003524441.1| type II and III secretion system protein [Sideroxydans
lithotrophicus ES-1]
gi|291584396|gb|ADE12054.1| type II and III secretion system protein [Sideroxydans
lithotrophicus ES-1]
Length = 851
Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats.
Identities = 79/480 (16%), Positives = 163/480 (33%), Gaps = 81/480 (16%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P + A + + + + I+I L++ + + + V D + AD
Sbjct: 184 PVTLQFRDANLKMVFEALSRSSGINILLDRDMRNDLK---ASIFVKDASVADALDLILMQ 240
Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
V + T++++ + ++ L D ++ ++ +
Sbjct: 241 NQLEKKVLNDSTVFIYPNTPAKIK-----EYQDLVIRTFQLTNADAKQMQTMIKTMLKTK 295
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
+I V ++++++ AV+++E ++ N+
Sbjct: 296 DIYVNEKNNSLIIRDTP-------EAVKMAEKLIASQDINEPE----------------- 331
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--------------SSGPSKSFAADFGGKFVS 240
V L+V + EV L Q+G + +SG +
Sbjct: 332 -VMLEVEVLEVLHSKLTQLGVKWPNQLGLSVNATPATSTATTTSGGAVVTTNTPAVPLTV 390
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G ++ L + LA P + + A G + T S
Sbjct: 391 NGLRHINGDAINVTPLSMTLDLRKELGDSNLLASPRIRVKQHEKAKIMIGDRVPVITNSV 450
Query: 301 STGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMP 349
+ AT SV D G+ L P + G + ++ EVS + +
Sbjct: 451 TPVATGTPVVTGSVQYLDVGLKLEVEPDIHMDGEVAIKTYLEVSTIANQVTNAASGSVAY 510
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
R +T + L G T VLAGL+ D+ ++ +P L +PILG LF ++ ++ +TE
Sbjct: 511 QIGTRNVNTVLRLKDGETQVLAGLINDEDRKSSASVPGLGDLPILGHLFSSNGDDKRKTE 570
Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
I ++ TP +++ + D+ D F+ + + + + G G+
Sbjct: 571 IILSITPHIIRNIHRPDV-----------DLAEFWSGTEDTLRNRPLSLQPVGMVNTGSA 619
>gi|330981434|gb|EGH79537.1| general secretion pathway protein D [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 589
Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats.
Identities = 64/305 (20%), Positives = 109/305 (35%), Gaps = 20/305 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G +++ S R + + + L+ QV ++ I EV+
Sbjct: 272 GNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVQLT 330
Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+G Q S T + + G + + + + L
Sbjct: 331 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 390
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGV 314
ALE + L+ P+L ++ Q A G ++ T +SV GV
Sbjct: 391 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVEYVQTGV 450
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLA 371
+L P + G + + IQ +VS N A P R T V SG T++L
Sbjct: 451 ILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGNPRISTRSVATQVAAQSGQTVLLG 510
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + +
Sbjct: 511 GLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 568
Query: 432 DHYSV 436
D Y
Sbjct: 569 DDYRQ 573
>gi|109896562|ref|YP_659817.1| general secretion pathway protein D [Pseudoalteromonas atlantica
T6c]
gi|109698843|gb|ABG38763.1| general secretion pathway protein D [Pseudoalteromonas atlantica
T6c]
Length = 689
Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats.
Identities = 93/502 (18%), Positives = 176/502 (35%), Gaps = 84/502 (16%)
Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL-QVPVDVQDVLVSDPTKADVVVH-- 82
L PI +V + + + ++ ++ ++ V + + ++V
Sbjct: 146 LAPILRQLNDQAGGGNVVSHDASNVMMLTGRAAVVNRLVEIIERVDKAGDEEVEIVKLKF 205
Query: 83 -SPRTMY----LFGKNVGQAN--------VILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
S + K G+A+ V+ M++ DI + I +L + +
Sbjct: 206 ASATELVRIIESINKTTGKASASGKDAPRVVADDRTNSIMVSGDIKARQRIVNLIERMDQ 265
Query: 130 FIADSN------IRVEMVSDTV-VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS- 181
+ S ++ + V VL G+ +IQ ++ S + ++ + S+
Sbjct: 266 ELETSGNTRVIFLKYSKAEELVKVLQGVSASIQAEEQGAAKSTSKAARDISIEAHEDSNA 325
Query: 182 -------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPS 227
+ V+ L+I QV ++ I EV +G Q S + S
Sbjct: 326 LVITAQPDMMRSLEDVIRQLDIR-RAQVQVEAIIVEVFEGDGTTVGVQWASEKYGAQQFS 384
Query: 228 KSFAADFGGKFVSE-------------------------------------GGDFSVKGV 250
G V+ GG
Sbjct: 385 NGNVVGIGSLAVAAEQAEDTTTTTVGFDDDGDPYSFDETTEGDYTALASLLGGVNGFLVG 444
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGAT 305
+ + VL A+ T L+ P LT + + A F G + +++
Sbjct: 445 AVKDGWGAVLQAVSTDTNSNVLSTPHLTTLDNEEAFFIVGQEVPIITGSTTGSNNTNPFQ 504
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
SV + G+ L TP + + L I+ EVS + + R+ TTV + G
Sbjct: 505 SVERQEIGIKLKVTPQINEGNAVQLLIEQEVSSISGATSVDIL--INKREIKTTVIVDDG 562
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAM 424
GTIVL GL+ DD+Q+ +P+L IP LG LF+++ ++ + + + P +++ V
Sbjct: 563 GTIVLGGLIDDDVQESVSKVPILGDIPYLGNLFKSTTTSKSKRNLMVFIRPTIIRDGVTA 622
Query: 425 RDLSRPDDHYSVEDDAKAFFFN 446
D+SR +Y + K
Sbjct: 623 SDISRKKYNYIRAEQLKRQSEG 644
>gi|315295914|gb|EFU55227.1| type IV pilus secretin PilQ [Escherichia coli MS 16-3]
Length = 386
Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 129/319 (40%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + +++ + + NI ++ + + +
Sbjct: 66 HSVAWQNDNVARQEVEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ ++ +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G + G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|300898927|ref|ZP_07117225.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1]
gi|300357442|gb|EFJ73312.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1]
Length = 386
Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats.
Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + NI ++ + + +
Sbjct: 66 HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKAALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|262370669|ref|ZP_06063994.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter
johnsonii SH046]
gi|262314469|gb|EEY95511.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter
johnsonii SH046]
Length = 390
Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 10/243 (4%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFAADFGGKF 238
++++LL++A + QV ++ I D +++G + S G + D G
Sbjct: 144 RMIDLLDVAVK-QVMVEARIVTASTDFSRELGIKWSAKKLGNSPVWGGDFQPSFDLGVDL 202
Query: 239 VSEGGDFSVKGV--LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ G+ + + L AL+ L+ P + Q A G + Y+
Sbjct: 203 ATNTAGTFNFGLLKISDYMLNLELSALQADGHGEVLSAPKVLTGDKQKAYILRGTEIPYQ 262
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
S+T + L TP++ G++ + ++ E + +G +
Sbjct: 263 -TWSATEGLKTEFRAANLKLEVTPSITPDGKVQMALKIE--KDTVGTLTSAGYLINTNEL 319
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V + G T+VL G+ D Q E +P +P++GALF+N+ + +TE+ I TP
Sbjct: 320 ETNVLVDDGETVVLGGIFDDIKQNQYEKVPFFGDLPVVGALFKNNTRSSAQTELLIFVTP 379
Query: 417 FLV 419
+V
Sbjct: 380 RIV 382
>gi|33151657|ref|NP_873010.1| competence protein E [Haemophilus ducreyi 35000HP]
gi|33147878|gb|AAP95399.1| competence protein E [Haemophilus ducreyi 35000HP]
Length = 419
Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats.
Identities = 71/441 (16%), Positives = 152/441 (34%), Gaps = 52/441 (11%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
R F++ S L A +++ E K +S ++K L++
Sbjct: 1 MRILFSLFFFISLSLLAQPLSLSLKNAPTAEILSYLAEENMKNIVLSDQIDKNTTLRIEN 60
Query: 65 DVQDVLVSDPTKADVVVHSPR---TMYLFG--KNVGQANVILIGHDGKQMLNLDILIERD 119
D +V + S R +Y G K I G K + L
Sbjct: 61 SHFDEIV--ESIVRANQLSKRKEKQIYFIGHLKEDKAIEKIDNGDKPKLITQTIKLDYAK 118
Query: 120 IAHLEMTLRRFIADSNI-------RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
+ + +L + + N+ + S+++++ + + + L + +
Sbjct: 119 ASEVIESLTKGKGNGNVLSEQGYLYFDERSNSLIIK---DSPDSMKHILALIKNLDKPT- 174
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------- 224
+Q+ ++ I + L+++G + + S
Sbjct: 175 ---------------------EQIAIEARIVTISSQDLQELGVRWGMFSPSDDYHKVASS 213
Query: 225 ----GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G + + + + ++ + L ALE+ + +A P L
Sbjct: 214 LETKGLTTANHLNVNFPVNNATSLALQVARINSRVLDLELTALEQENNVEIIASPRLLTT 273
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
+ + AS G + Y + ++ + + L TP + + +I L + + P
Sbjct: 274 NKKPASIKQGAEIPYVLYNRKDEVKNIEFKEAVLGLQVTPHISADNQILLDLVVTQNSPN 333
Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ + ++ +T V G TIVL G+ + + ++ +PLL IP+L LF
Sbjct: 334 LNNTAVNGLITIDKQELNTQVFAKHGETIVLGGIFQHLTAKGEDRVPLLGSIPVLKKLFS 393
Query: 400 NSRFNREETEIFIAATPFLVK 420
+S + E+ I TP+LV+
Sbjct: 394 HSTDKITKRELVIFVTPYLVQ 414
>gi|167855583|ref|ZP_02478343.1| type II secretory pathway, component HofQ [Haemophilus parasuis
29755]
gi|167853274|gb|EDS24528.1| type II secretory pathway, component HofQ [Haemophilus parasuis
29755]
Length = 420
Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 96/239 (40%), Gaps = 12/239 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV----- 247
+Q+ ++ I + + L+Q+G + + + K G + + +
Sbjct: 173 TEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPS 232
Query: 248 ------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
++ L ALE I +A P L + AS G + Y S
Sbjct: 233 ASVALQIAAINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKK 292
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
T + + + L TP + +I L + + P +N M + ++ +T V
Sbjct: 293 KEITDIEFREAVLGLEVTPHISKQNQILLDLAISQNSPNNQMNNM-MATIDKQEINTQVL 351
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G TIVL G+ + I + ++ +PLL IP++ LF +R + E+ I TP++VK
Sbjct: 352 AKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKRELVIFVTPYIVK 410
>gi|301019596|ref|ZP_07183756.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1]
gi|300399184|gb|EFJ82722.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1]
Length = 386
Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats.
Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + NI ++ + + +
Sbjct: 66 HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKAALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|152991308|ref|YP_001357030.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
gi|151423169|dbj|BAF70673.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
Length = 495
Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats.
Identities = 55/316 (17%), Positives = 117/316 (37%), Gaps = 40/316 (12%)
Query: 121 AHLEMTLRRFI--ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
L+ L+ F+ S++ + + V + G +
Sbjct: 188 DSLKQQLQTFLHDPHSDVFLNKDASIVTVTGT------------------------KEEL 223
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
++ + L QV ++ I EV+ + + +G S S+S G
Sbjct: 224 DKVERFLQKLQDRMHKQVMIEAKIIEVQYNDDQTVGIDWSKFSLDVTGSRSAQQSRSGST 283
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ FS + +L L++ ++ L+ P + ++ Q A G Q Y+
Sbjct: 284 KLNNFGTPDYFIGYNFSMQGLLDFLKKYGKVKILSNPKVMTLNNQPAIINVGDQLSYRYE 343
Query: 299 SS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVN 344
+ + S+ G+ L+ P + I ++I S N
Sbjct: 344 NGVVITGGNAVANQTYSIGQTFVGISLYVIPEITENSDIIMKINPVTSALKNENIGYETN 403
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
P R+++ + V++ G I++ GL+ + + +P+L IPI+G F++ +
Sbjct: 404 RTLPPDIRLKQVTSIVKVKDGQKILIGGLISKNYSKQFNKVPVLGDIPIIGYAFKSKNNS 463
Query: 405 REETEIFIAATPFLVK 420
+++E+F+ P +VK
Sbjct: 464 VKKSELFVLIIPKIVK 479
>gi|224368216|ref|YP_002602379.1| PilQ [Desulfobacterium autotrophicum HRM2]
gi|223690932|gb|ACN14215.1| PilQ [Desulfobacterium autotrophicum HRM2]
Length = 727
Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats.
Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 3/228 (1%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
Q+ + + EV ++ K +G S++ +++ ++ G +
Sbjct: 497 TPQIMISARVVEVNKNFSKSLGIDWSVSKNNANSGFDVIMNYPVASDGSLGFDFSRIFGT 556
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+ + L A E ++ ++ P + + + A G +G +SV +
Sbjct: 557 ELALDATLSASEIKGDVKIISSPKILTLDNKKAKIK-QGLEYAYLERDDSGGSSVLFKNI 615
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
++L TP V RIG+ + ++ V+ +PS +A+T + + G TIV+ G
Sbjct: 616 DLLLEVTPHVTPDNRIGMSVLITKNDLASVVDG--VPSLSTNEAETELLVNDGNTIVIGG 673
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++K+ + G P LS IP+LG LF + + E+ I TP +V+
Sbjct: 674 IVKNTSSTSETGFPGLSNIPLLGKLFGSDSTEDTKNELLIFITPTIVQ 721
>gi|330889718|gb|EGH22379.1| general secretion pathway protein D [Pseudomonas syringae pv. mori
str. 301020]
Length = 680
Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats.
Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G +++ S R + + + L+ QV ++ I EV
Sbjct: 363 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 421
Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+G Q S T + + G + + + + L
Sbjct: 422 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 481
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
ALE + L+ P+L ++ Q A G S +T ++ V GV
Sbjct: 482 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 541
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
+L P + G + + IQ +VS +A P R T V SG T++L
Sbjct: 542 ILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSGQTVLLG 601
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ + +
Sbjct: 602 GLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQVT 659
Query: 432 DHYSV 436
D Y
Sbjct: 660 DDYRQ 664
>gi|195934879|ref|ZP_03080261.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. EC4024]
gi|320191599|gb|EFW66249.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7
str. EC1212]
gi|326337648|gb|EGD61483.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7
str. 1044]
gi|326344601|gb|EGD68350.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7
str. 1125]
Length = 386
Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats.
Identities = 71/319 (22%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + NI ++ + + +
Sbjct: 66 HSIAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|308047936|ref|YP_003911502.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799]
gi|307630126|gb|ADN74428.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799]
Length = 723
Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats.
Identities = 68/383 (17%), Positives = 128/383 (33%), Gaps = 64/383 (16%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-------VEMVSDTVVLHGMV 151
V+ +++ D + A L L + + +S + VL G
Sbjct: 240 VVADERTNSVVISGDERARQRAAALVRELDQEMQNSGNTKVVYLKYAKAEDLQEVLSGFA 299
Query: 152 RTIQDSQ--------------RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
++Q + + +++ + + V+ L+I QV
Sbjct: 300 ESLQTEEGGSAQTQRRRNNEITIMAHADSNALVINAQPDQIQTLESVIRQLDIR-RAQVL 358
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------------------- 235
++ I E+ G Q +F G
Sbjct: 359 VEAIIVEIAEGDEVGFGVQWGSADGGLIQYNTFGTTIGEVGAGIWDARDVPGTEVCSPEG 418
Query: 236 -------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ + + F ++ A+ + LA P++T +
Sbjct: 419 VCTTNPDQDGDITTLAAALSKVNGMAWGVAMGDFGALIQAVAADSNSNVLATPSITTLDN 478
Query: 283 QSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
Q ASF G + T ++ T+V + G+ L TP + + L I+ EVS
Sbjct: 479 QEASFIVGDEVPVITGSTSGSNNDNPFTTVERKEVGIKLKVTPQINEGNAVQLEIEQEVS 538
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
++ R TTV SG T+VL GLL +D+Q+ +PLL IP++G L
Sbjct: 539 NVNGRTAVD--VTFGKRTLTTTVLADSGETVVLGGLLNEDVQESVSKVPLLGDIPVIGHL 596
Query: 398 FRNSRFNREETEIFIAATPFLVK 420
F ++ + + + I P +++
Sbjct: 597 FSSTSSKKTKRNLMIFIKPTIIR 619
>gi|300974788|ref|ZP_07172732.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1]
gi|301050407|ref|ZP_07197293.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1]
gi|300297875|gb|EFJ54260.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1]
gi|300410491|gb|EFJ94029.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1]
gi|315291661|gb|EFU51017.1| type IV pilus secretin PilQ [Escherichia coli MS 153-1]
Length = 386
Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + NI ++ + + +
Sbjct: 66 HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ ++ +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G + G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|300987128|ref|ZP_07178014.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1]
gi|300306272|gb|EFJ60792.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1]
gi|323189024|gb|EFZ74308.1| transport protein hofQ [Escherichia coli RN587/1]
gi|324009420|gb|EGB78639.1| type IV pilus secretin PilQ [Escherichia coli MS 57-2]
gi|324014615|gb|EGB83834.1| type IV pilus secretin PilQ [Escherichia coli MS 60-1]
gi|330909424|gb|EGH37938.1| type 4 pilus biogenesis protein PilQ [Escherichia coli AA86]
Length = 386
Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + NI ++ + + +
Sbjct: 66 HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ ++ +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G + G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|289625539|ref|ZP_06458493.1| general secretion pathway protein D [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|330866897|gb|EGH01606.1| general secretion pathway protein D [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 775
Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats.
Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G +++ S R + + + L+ QV ++ I EV
Sbjct: 458 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 516
Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+G Q S T + + G + + + + L
Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
ALE + L+ P+L ++ Q A G S +T ++ V GV
Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 636
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
+L P + G + + IQ +VS +A P R T V SG T++L
Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSTADTNSTNNDANGNPRISTRSVATQVAAQSGQTVLLG 696
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ + +
Sbjct: 697 GLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQVT 754
Query: 432 DHYSV 436
D Y
Sbjct: 755 DDYRQ 759
>gi|238792812|ref|ZP_04636443.1| General secretion pathway protein D [Yersinia intermedia ATCC
29909]
gi|238727920|gb|EEQ19443.1| General secretion pathway protein D [Yersinia intermedia ATCC
29909]
Length = 658
Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 10/257 (3%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--V 239
V+ L++ QV ++ I E + +G Q S +A+ +
Sbjct: 348 DLVIEKLDVR-RAQVLVEAIIVETQNGEGLNLGIQWENKFSGGVNFIPNSANTRNNSERM 406
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ + ++ + AL + LA P++ + A F G + T +
Sbjct: 407 PPMAIAGLTAGFYKGNWSGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLTST 466
Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
+T S++ + GV+L P + + L I+ EVS +A +
Sbjct: 467 QTTSTDRVYNSISRKNVGVMLKVKPQINKGDSVLLEIRQEVSSIADSSDANANNLGSIFN 526
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R + V + SG T+V+ GLL I ++ IP+L IP +G LFR + E++ + +
Sbjct: 527 KRVVNNAVLVKSGETVVVGGLLDKKIYKIVNKIPILGDIPFIGGLFRQKKEKVEKSNLIL 586
Query: 413 AATPFLVKPVAMRDLSR 429
P +++ + +L
Sbjct: 587 FIKPTILRETSDYNLVT 603
>gi|206901782|ref|YP_002250755.1| bacterial type II and III secretion system protein [Dictyoglomus
thermophilum H-6-12]
gi|206740885|gb|ACI19943.1| bacterial type II and III secretion system protein [Dictyoglomus
thermophilum H-6-12]
Length = 1256
Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 72/324 (22%), Positives = 137/324 (42%), Gaps = 38/324 (11%)
Query: 97 ANVILIGHDGKQMLNLDILIER-DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
++ +G ++ + ++ + L+ + D N + S +++ G
Sbjct: 969 TTAVVATKEGAPIVTKEYKLKYISLDTLKSVVSGIAKDVNFYYDQTSGLLLVQG------ 1022
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
+ + + + ++ L+ QV + V + EV R+ +K IG
Sbjct: 1023 PADQVSSV------------------ESMIAKLDKPTP-QVKIDVQVIEVSRENIKDIGI 1063
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ S+G + + +S +++ + ALE + LA+P
Sbjct: 1064 EWGTGSISTGLQITANVGWQDLRIS---------IINPGQISANIKALESQNKAKILAQP 1114
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
++T +SG+S + G + + G V+ D G++L+ TPTV + G I + +
Sbjct: 1115 SMTTVSGKS-TRIMIGDRVPLISYDAQGNRQVSFVDVGIILNVTPTVNADGTITANLNPQ 1173
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
VS V D+P R+A T V L +G T+ L GLL+ + + +PLL IPILG
Sbjct: 1174 VSTIQGYVQ--DVPIISTREAQTIVNLKNGETLALGGLLRQEEIESMSKVPLLGDIPILG 1231
Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
LF+ + + E E+ I TP ++
Sbjct: 1232 ELFKARKIQKVERELIILITPKII 1255
>gi|219872291|ref|YP_002476666.1| competence protein E/type II secretory pathway, component HofQ
[Haemophilus parasuis SH0165]
gi|219692495|gb|ACL33718.1| competence protein E/type II secretory pathway, component HofQ
[Haemophilus parasuis SH0165]
Length = 420
Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 96/239 (40%), Gaps = 12/239 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV----- 247
+Q+ ++ I + + L+Q+G + + + K G + + +
Sbjct: 173 TEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPS 232
Query: 248 ------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
++ L ALE I +A P L + AS G + Y S
Sbjct: 233 ASVALQIAAINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKK 292
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
T + + + L TP + +I L + + P +N M + ++ +T V
Sbjct: 293 KEITDIEFREAVLGLEVTPHISKQNQILLDLAISQNSPNNQMNNM-MATIDKQEINTQVL 351
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G TIVL G+ + I + ++ +PLL IP++ LF +R + E+ I TP++VK
Sbjct: 352 AKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKRELVIFVTPYIVK 410
>gi|293393378|ref|ZP_06637690.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582]
gi|291424115|gb|EFE97332.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582]
Length = 411
Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 63/292 (21%), Positives = 120/292 (41%), Gaps = 25/292 (8%)
Query: 154 IQDSQRAVELSETFLSQSGR--NQYANSSSKKVMNLLNIAGE------------------ 193
A ++ + +Q G ++ + K N L I
Sbjct: 119 ALQHADAETIAASLQAQRGTLLSERGSVVVDKRTNALMIRDAAPALSALQGWLRELDKPL 178
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGV 250
+QV L I + R+ L+++G + +T + +F S
Sbjct: 179 EQVQLAAHIVTISREDLRELGVRWGLTADQRAAKRLRIDNFSVGLPLERSAINVGFHLAR 238
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ + L ALE+ A+ +A P L + Q+AS G + Y+ S ++GAT++
Sbjct: 239 VSGRLLDLELMALEQENAVEIIASPRLLTANQQTASIKQGTEIPYEVSSGASGATAIQFR 298
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
+ + + TP +L G I L + + P + +G+ + ++ T V + +G T+
Sbjct: 299 EAVLGMEVTPRILPNGLITLTLHISQNMPGRAVRQGSGEALAIDKQEIKTQVTVKNGETV 358
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
VL G+ + + +P L +P+LG+LF+ S ++ E+ I TP L+K
Sbjct: 359 VLGGIFQRQRSHGADKVPGLGDVPLLGSLFKQSSKQHKKRELVIFITPTLIK 410
>gi|320330838|gb|EFW86812.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 701
Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 345 RKVGSVLLVAPSDEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 402 TSAESKADERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460
Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
D KQ+G + + ++SG + ++
Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 520
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + L A+E+ +++P + ++A G + Y+ SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V+ + + L TP + RI + ++ EP +P + + + V + G
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691
>gi|241668668|ref|ZP_04756246.1| type IV pili secretin component [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877201|ref|ZP_05249911.1| type IV pili secretin component [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843222|gb|EET21636.1| type IV pili secretin component [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 587
Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 70/411 (17%), Positives = 148/411 (36%), Gaps = 29/411 (7%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
P + + + +++ ++ + V +D+++V P ++V+ S
Sbjct: 182 PITISFKDTPVQTVLQVLSEFAGLNLVVSSSVRGNVSIDLKNV----PWNEVMNIVLVSK 237
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
L K + + + L++ +R + + + FI + +
Sbjct: 238 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 294
Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
+ +G + + + S + T + + V+N ++I DQV ++
Sbjct: 295 ITSMAKQNGGIMSPRGS--ITSDARTNTLIVTDTEEKIPLIRNVINEIDIPN-DQVLIEA 351
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-------DR 253
I EV+R ++GF + ++ S E V
Sbjct: 352 RIVEVQRTSGLELGFNYGVSHPSGLNVGLDTFRNPTPKPGETDTSVVASTARLAYTLAGG 411
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
E + ALE + ++ P L + ++A F G+ + ++++GA SV +
Sbjct: 412 LQLEMEIRALENESLANLVSSPHLVVSNNETA-FIKDGKDVPYQQATASGAASVAFQEAV 470
Query: 314 VVLHFTPTVLSPGRIGL-----RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
+ L TP + G I + + S P R+ T V + T+
Sbjct: 471 LELQVTPQIAPDGNIVMEVLVTKNSVGASSGKTSTGEDLPPIINKREVTTKVMVKDSETV 530
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V+ G+ + + + IP L IP LG LF ++ + E+ I TP ++
Sbjct: 531 VIGGIYTKEQTETRNKIPFLGDIPYLGYLFSYTKIEDRDAELLIFITPKII 581
>gi|332750832|gb|EGJ81239.1| transport protein hofQ [Shigella flexneri 2747-71]
gi|332763627|gb|EGJ93866.1| protein involved in utilization of DNA as a carbon source [Shigella
flexneri 2930-71]
gi|332997370|gb|EGK16986.1| transport protein hofQ [Shigella flexneri K-218]
gi|333012492|gb|EGK31873.1| transport protein hofQ [Shigella flexneri K-304]
Length = 386
Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + +I ++ + + +
Sbjct: 66 HSIAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 245 QPASIKQESEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|312968303|ref|ZP_07782513.1| transport protein hofQ [Escherichia coli 2362-75]
gi|312287128|gb|EFR15038.1| transport protein hofQ [Escherichia coli 2362-75]
Length = 386
Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + NI ++ + + +
Sbjct: 66 HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ ++ +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G + G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|114321548|ref|YP_743231.1| general secretion pathway protein D [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227942|gb|ABI57741.1| general secretion pathway protein D [Alkalilimnicola ehrlichii
MLHE-1]
Length = 673
Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 81/457 (17%), Positives = 159/457 (34%), Gaps = 40/457 (8%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
+ L P L AN+ +I+ + + + + + +++ ++ V +
Sbjct: 148 LVPVLRPLVPQDGHLAAYSPANSLIISDTAANVDRLEVLIGRVDRDTEGEIEVIQLEHAA 207
Query: 72 SDPTKADVVVHSP-----RTMYLFGKNVGQANVILIGHDGKQMLN---LDILIERDIAHL 123
+ V R + + + +I + ++ I E
Sbjct: 208 ASEVVRMVRELEDEEREGRRLRVVADERANSVMIAGDRQRRLLVRALIGQIDSEVAAEGT 267
Query: 124 EMTLRRFIADSN---IRVEMVSDTVVLH-GMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ AD+ +E + +++ G S T
Sbjct: 268 AQVVYLRFADAEELVPVLEGIGTSLLESRGGNDAGGQGLDIRAHSSTNALVMNGPADVLR 327
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS------------ 227
S + V+N L+I QV ++ IAEV +D ++++G Q + G
Sbjct: 328 SLRSVLNRLDIR-RAQVLVEAVIAEVSQDRVEELGVQWGVLSEDRGVGLINFGGAAGAGG 386
Query: 228 -----------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
S + V +G V + ++ AL +A L+ P+
Sbjct: 387 GIADVIRAAGAISDGSTADLPQVGDGAAIGVGDLRGSTQVAALIRALSGDSASNILSTPS 446
Query: 277 LTAISGQSASFTSGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
L + + A G + T S +S+ D GV L P + + L I
Sbjct: 447 LMTMDNEEAEIVVGQNVPFITGRAIEDSGQAFSSIQRQDVGVQLRIRPQINEGDTLKLEI 506
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ EVS G+ +R T+V + +G +VL GL+ D ++ + +PLL +P
Sbjct: 507 EQEVSSVSGGIQGAADLVTDLRSVRTSVMVENGQMVVLGGLIDDQLRTRSQAVPLLGNLP 566
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
LG LFR R E+ + + P +++ A ++ +
Sbjct: 567 GLGRLFRYDRSQVEKRNLMVFLRPVIIRDTAAQERAT 603
>gi|251790891|ref|YP_003005612.1| general secretion pathway protein D [Dickeya zeae Ech1591]
gi|247539512|gb|ACT08133.1| general secretion pathway protein D [Dickeya zeae Ech1591]
Length = 696
Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 51/260 (19%), Positives = 97/260 (37%), Gaps = 12/260 (4%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
A + ++ L++ +QV ++ + EV++ +G S
Sbjct: 385 SAPPDAMRQAASIIRQLDVR-HEQVLVEAIVVEVQQAEGLNLGIAWGNRNYGGSNFNSVN 443
Query: 232 ADFGGKFVSEGGDF-----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
G + + + ++ T+ +ALE LA P++ + A
Sbjct: 444 VGNGFNQPNPLVNALKGTEGLVAGFYHGNWGTLFNALESNKRNNILATPSVVTLDNHRAE 503
Query: 287 FTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
F G T S +T +V G+ P + G I L I E+S
Sbjct: 504 FNVGQDVPILTGSQTTNNDNIFNTVQRRTIGIKFSILPRINQSGTILLNISQEISSLSDT 563
Query: 343 VNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ +R + V++ T+V+ GLL D+ ++ +PLL IP LG LFR
Sbjct: 564 AQVNSNLGSVFNIRTVNNVVQVQDDETVVIGGLLDDEKKETTNKVPLLGDIPWLGNLFRY 623
Query: 401 SRFNREETEIFIAATPFLVK 420
+ N ++ + + P +++
Sbjct: 624 TSQNNDKRNLMLFIRPRIIR 643
>gi|330872058|gb|EGH06207.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 681
Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats.
Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 325 RKVGSVLLVAPSDEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 381
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 382 TSAESKADERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 440
Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
D KQ+G + + ++SG + ++
Sbjct: 441 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 500
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + L A+E+ +++P + ++A G + Y+ SS+GAT+
Sbjct: 501 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 559
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V+ + + L TP + RI + ++ EP +P + + + V + G
Sbjct: 560 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 619
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP +
Sbjct: 620 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 671
>gi|306816271|ref|ZP_07450409.1| outer membrane porin HofQ [Escherichia coli NC101]
gi|222035093|emb|CAP77838.1| Protein transport protein hofQ [Escherichia coli LF82]
gi|305850667|gb|EFM51124.1| outer membrane porin HofQ [Escherichia coli NC101]
gi|307628452|gb|ADN72756.1| outer membrane porin HofQ [Escherichia coli UM146]
gi|315286025|gb|EFU45463.1| type IV pilus secretin PilQ [Escherichia coli MS 110-3]
Length = 386
Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + NI ++ + + +
Sbjct: 66 HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ ++ +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G + G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|320322061|gb|EFW78157.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
glycinea str. B076]
Length = 701
Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats.
Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 345 RKVGSVLLVAPSDEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460
Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
D KQ+G + + ++SG + ++
Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 520
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + L A+E+ +++P + ++A G + Y+ SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V+ + + L TP + RI + ++ EP +P + + + V + G
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691
>gi|238783680|ref|ZP_04627700.1| General secretion pathway protein D [Yersinia bercovieri ATCC
43970]
gi|238715393|gb|EEQ07385.1| General secretion pathway protein D [Yersinia bercovieri ATCC
43970]
Length = 661
Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats.
Identities = 65/345 (18%), Positives = 133/345 (38%), Gaps = 27/345 (7%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192
VL+G+ + + ++A +S++ Y +++ ++V+ L++
Sbjct: 303 VLNGISQGQRSDKKASVVSKSQSGNIAIKAYDQTNALVITADLRMMKELEQVIEKLDVR- 361
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--VSEGGDFSVKGV 250
QV ++ I E + +G Q + S +
Sbjct: 362 RAQVLVEAIIVETQNAEGLNLGIQWANKYSGGINLLPRPGHARSHSEQPMPMVIAGLTAG 421
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATS 306
+ ++ + AL + LA P++ + A F G + T + +T S
Sbjct: 422 FYKGNWNGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLTSTQTTATDKVYNS 481
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELP 363
++ G++L P + + L I+ EVS N + R + V +
Sbjct: 482 ISRQSVGIMLKVKPQINKGDSVLLEIRQEVSSVADSSNTNTNNLGFIFNKRAINNAVLVK 541
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
SG T+V+ GLL + + + IPLL IP +G LFR S+ +++ + + P +++
Sbjct: 542 SGETVVVGGLLDEKLSKTVNKIPLLGDIPFIGGLFRQSKEKVDKSNLILFIKPTILRETN 601
Query: 424 MRDLSRPDDH--YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
+ D H Y + + N N++Y A+E++ +Y
Sbjct: 602 DYSVVTIDKHTKYKDSNSQENTINN--NRLYHDLLATEIKSDSYN 644
>gi|197117937|ref|YP_002138364.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis
Bem]
gi|197087297|gb|ACH38568.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis
Bem]
Length = 946
Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats.
Identities = 68/442 (15%), Positives = 157/442 (35%), Gaps = 61/442 (13%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIG----KGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
P + ++ + + G+++++ + + ++ + +V +
Sbjct: 523 VAEELTPTPARTSDDMAVQLPSDRPAKKVYTGRRVTLEFSDADVRKIFQLIAEVSNLNFL 582
Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA--- 132
AD V G ++ L+ Q L++ + + E + +
Sbjct: 583 IADDVT-------------GTISIKLVNVPWDQALDVILDAKGLAMVREGNIVQIKPRSK 629
Query: 133 -----DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF--LSQSGRNQYANSSSKKVM 185
D + + ++ ++ + + +++ F L + + +V+
Sbjct: 630 MQNQADEELAAKKAAERLMELKTMVFEVNYASVNDVAMQFGMLKSDRGVITKDERTSRVI 689
Query: 186 --------NLLNI------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
N + A E QV ++ I E + +G Q ++ S +
Sbjct: 690 VKDIQTALNDMKALLKTLDAPEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASVAGI 749
Query: 232 ADFGGKFVS--------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
F G S + + L A ++ ++ P +
Sbjct: 750 NSVDTGFGGVVSAAGPGSSGAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKV 809
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
++ ++A + G Y+T S+ T + + L TP + + G + ++I+ +
Sbjct: 810 VTLNNKAAKISQGQSIPYQTTSAEG--TKTEFVEAALTLEVTPHITADGSVSMKIKASNN 867
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
P G P ++A T + + +G T V+ G+ D + G+P LS IP+LG L
Sbjct: 868 SP----GTGSPPPINKKEATTELVVSNGDTTVIGGIYVDSDTESDTGVPFLSDIPLLGWL 923
Query: 398 FRNSRFNREETEIFIAATPFLV 419
F+++ + +TE+ I TP +V
Sbjct: 924 FKSNSKQKTKTELLIFITPKIV 945
>gi|283788039|ref|YP_003367904.1| T2SS protein D [Citrobacter rodentium ICC168]
gi|282951493|emb|CBG91192.1| putative T2SS protein D [Citrobacter rodentium ICC168]
Length = 662
Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats.
Identities = 56/295 (18%), Positives = 109/295 (36%), Gaps = 25/295 (8%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ ++ +T NQ + V+ L+I QV ++ I EV+
Sbjct: 302 SAPSSNNAISITADEQTNSLVITANQSQLQQLEPVIEKLDIR-RAQVLVEAIIVEVQDGK 360
Query: 210 LKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDF-------SVKGV 250
+G Q + + + G S+ + +
Sbjct: 361 GLNLGVQWANKNIGATQFTNTGLPIFNAAQGVKEFKKQGGITSDNPAYDLFSKYRGMAAG 420
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATS 306
+ +L AL + L+ P++ + + ASF G + S +T ++
Sbjct: 421 FFSGDWAVLLTALSSDSKNDILSTPSIVTLDNKEASFNVGQDVPVLSGSQTTSGDNIYST 480
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSG 365
V G L TP + + + I+ EVS ++ + P++ R V + SG
Sbjct: 481 VERKTVGTKLKVTPQINEGDSVLMEIEQEVSSVDSTASSSSLGPTFNTRTIQNAVLVKSG 540
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GL+ D ++ +PLL IP +G LFR + + + + + P +++
Sbjct: 541 ETVVLGGLMDDSSKEEVSKVPLLGDIPFIGQLFRYTNHEKSKRNLMVFIRPTIIR 595
>gi|239787173|emb|CAR94716.1| wmpD protein [Pseudoalteromonas ruthenica]
Length = 688
Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats.
Identities = 60/286 (20%), Positives = 103/286 (36%), Gaps = 47/286 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+KV+ L+I QV ++ I EV G Q + G
Sbjct: 342 EKVIERLDIR-RAQVLVEAIIVEVSEGDGVNFGLQWISEQGGMLQFNNGTTVPVGSLAVA 400
Query: 242 ---------------------------------------GGDFSVKGVLDRFSFETVLHA 262
GG + + + + ++ A
Sbjct: 401 AEQARDKTITDNVVGSESGVVTPISRTEEGDLGPLASLLGGINGLAMGIVKNDWGAIVQA 460
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLH 317
+ T LA P++T + + AS G + T SS+ +V + GV L
Sbjct: 461 VSNDTNSNILATPSITTMDNEEASMIVGQEVPIITGSSTGSNNENPFQTVDRQEVGVKLK 520
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
TP + + L I+ EVS S R TTV GG +VL GL+ +D
Sbjct: 521 VTPQINDGSAVQLTIEQEVSNVAGSTAVD--ISINKRAITTTVLADDGGMVVLGGLIDED 578
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
+Q+ +PLL IP+LG LF+++ ++ + + + P +++ +
Sbjct: 579 VQESVSKVPLLGDIPVLGHLFKSTSTSKRKRNLIVFIRPTILRDIE 624
>gi|332085619|gb|EGI90783.1| transport protein hofQ [Shigella dysenteriae 155-74]
Length = 386
Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats.
Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ + + +I ++ + + +
Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+VL G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|327251020|gb|EGE62713.1| transport protein hofQ [Escherichia coli STEC_7v]
Length = 386
Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + +I ++ + + +
Sbjct: 66 HSVAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKAALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|257483507|ref|ZP_05637548.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|330984730|gb|EGH82833.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009590|gb|EGH89646.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 701
Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats.
Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460
Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
D KQ+G + + ++SG + ++
Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 520
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + L A+E+ +++P + ++A G + Y+ SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V+ + + L TP + RI + ++ EP +P + + + V + G
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691
>gi|220933412|ref|YP_002512311.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7]
gi|219994722|gb|ACL71324.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7]
Length = 655
Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats.
Identities = 82/460 (17%), Positives = 155/460 (33%), Gaps = 49/460 (10%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
+ L P L E+N +++ S + ++ ++ + +
Sbjct: 136 AAQLVPILRPLVPQSGHLVASAESNVLIVSDSAANAERIAELVARIDLDGREDLEMIPLR 195
Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
+ + G+ GQ ++ +L D I + L
Sbjct: 196 HASAAEVVRVLTSLHGGGE---GRR-GQMQMVADERTNSILLGGDPKRRVAIRAMISHLD 251
Query: 129 RFIADSNIRV------EMVSDTVVLHGMVRTIQDSQ------------RAVELSETFLSQ 170
I N +V + VL G+V+ + +A E + +
Sbjct: 252 TRIEGGNTQVVYLRYANAMDMAEVLKGLVQGMDVPGADGREGRGGINIQAHESTNALVLS 311
Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
+ + + V+N L++ QV ++ IAEV D + ++G Q + +SG
Sbjct: 312 GPPDAVRDLRA--VINQLDVR-RAQVLVEAVIAEVSYDKITELGVQWGVGNPNSGVGVIN 368
Query: 231 AADFGGKFVSEGGD--------------------FSVKGVLDRFSFETVLHALERATAIR 270
G + G G + ++ AL ++
Sbjct: 369 FNRSGSGIIGVAGGIDAFLRGAVATPPNLGDGAFLGGIGTSGSTTIAALVRALAGDSSSN 428
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPG 326
L+ P+L + + A G + S ++ D GV L P +
Sbjct: 429 ILSTPSLMTMDNEEAEIVVGQNVPFIAGRSIEQSGQAFDTIQRQDVGVKLRIKPQINEGN 488
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L I+ EVS+ G A R T V + G +VL GL+ D + Q ++ +P
Sbjct: 489 SIRLEIEQEVSQVAAGATAAADLVTNKRSLRTIVMVDDGEMVVLGGLIDDVLVQTQDRVP 548
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
L IP +G LFR +E+ + + P +V+ A+++
Sbjct: 549 GLGSIPGVGRLFRYDTARKEKRNLMVFLHPVIVRDSAVQE 588
>gi|260770770|ref|ZP_05879699.1| general secretion pathway protein D precursor (Cholera toxin
secretion protein epsD) [Vibrio furnissii CIP 102972]
gi|260614007|gb|EEX39197.1| general secretion pathway protein D precursor (Cholera toxin
secretion protein epsD) [Vibrio furnissii CIP 102972]
gi|315178810|gb|ADT85724.1| general secretion pathway protein D [Vibrio furnissii NCTC 11218]
Length = 675
Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats.
Identities = 54/320 (16%), Positives = 113/320 (35%), Gaps = 49/320 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIA 203
G + +QR + + A V+ L+I QV ++ I
Sbjct: 296 TGQKSSSGAAQRNEVMIAAHADTNSLVITAPQDIMNAILDVVAQLDIR-RAQVLIEALIV 354
Query: 204 EVRRDILKQIGFQHSI--------------------------------------TGSSSG 225
E+ +G Q +G+
Sbjct: 355 EMSEADGINLGVQWGSLESGSVIQYSNSGASIGSVMVGLEEAKDQTTTEYYYDSSGNRRP 414
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ + + D+ + G + + ++ A+ + L+ P++T + A
Sbjct: 415 YTSTESGDYSSLASALSGINGAAVSVLMGDWTALISAVSSNSNTNILSSPSITVMDNGEA 474
Query: 286 SFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
SF G + + ++ +V + G+ L P + + L I+ EVS +
Sbjct: 475 SFIVGEEVPVITGSTSSSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLAIEQEVSNVL 534
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
A D+ + R+ +T+V + G +VL GL+ + + + +PLL IPI+G LF +
Sbjct: 535 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERTAESESKVPLLGDIPIIGHLFSS 593
Query: 401 SRFNREETEIFIAATPFLVK 420
+ E+ + + P +++
Sbjct: 594 TSTQVEKKNLMVFIKPTIIR 613
>gi|330807111|ref|YP_004351573.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327375219|gb|AEA66569.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 696
Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats.
Identities = 53/255 (20%), Positives = 103/255 (40%), Gaps = 21/255 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
+++ L+I QV ++ I E D K +G + + + G S G
Sbjct: 434 RIVAQLDIPVR-QVMIEARIVEANVDYDKSLGVRWGGSVQNKGNWSSSGVTTGDSTTVGT 492
Query: 236 ------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ + D + L A+E+ +++P + +
Sbjct: 493 PGSTSTNQPFVDLGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKE 552
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
+A G + Y+ SS+GATSV+ + + L TP + RI + ++ EP
Sbjct: 553 TAKILKGTEIPYQEA-SSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLN 611
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
D+P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR
Sbjct: 612 KVNDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVV 671
Query: 404 NREETEIFIAATPFL 418
+ ++E+ + TP +
Sbjct: 672 SDSKSELLVFLTPRI 686
>gi|110632479|ref|YP_672687.1| Flp pilus assembly protein secretin CpaC-like [Mesorhizobium sp.
BNC1]
gi|110283463|gb|ABG61522.1| Flp pilus assembly protein secretin CpaC-like protein
[Chelativorans sp. BNC1]
Length = 473
Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats.
Identities = 94/446 (21%), Positives = 172/446 (38%), Gaps = 55/446 (12%)
Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
+ G+++ I + K + L + + + V+DPT AD+ +++GK+ G+
Sbjct: 73 TWAQASPAYGQRLIIEIGKGLQLSGTENAESLFVADPTIADIKESPGEAHFIYGKSAGET 132
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
V + G+ + D+++ ++ ++ L + + I + +V G V Q
Sbjct: 133 TVTGVDLGGRTLFQYDMVVIYNLDEMQRMLSQRFPAARITIRSARGSVYATGTVPDQQTY 192
Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
A+E E + +S ++N + +A + L + EV RD L+ G
Sbjct: 193 DAAIESLEKSIPESV-----------LINEIAVAESPIIRLDIKFMEVSRDRLETYGVNW 241
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
S S+ G + L L++ TL
Sbjct: 242 SALSPSNHYRTGDIRGRG------------------HDVNKFMKLLLDNGVATILSDTTL 283
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
T I + ASF +G + T S + GA S V G + FTP +L G++ L I+ E
Sbjct: 284 TTIGRKKASFMAGEEIAIPTHSVNNGAASFGVDYKFVGFNIGFTPQLLPGGKVSLAIEAE 343
Query: 336 VSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-----LL 388
+SEP V ++G +P RK +T V+L SG + +LAGL + D + P ++
Sbjct: 344 ISEPRQTVQFSSGPVPYVAARKLNTNVDLHSGESFILAGLSRMDTTGAHDQ-PRRNWGVV 402
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS-VEDDAKAFFFNR 447
+ +L +L + + +I + TP+ D D + + N+
Sbjct: 403 GE--VLRSLAGHGSVSAHNRDIAVVVTPY----FGASDKPSAADITGLQRSNIEFILSNK 456
Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIY 473
+ G GF+Y
Sbjct: 457 ---------SKPFSSARIYGPAGFLY 473
>gi|300822816|ref|ZP_07102952.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7]
gi|300524582|gb|EFK45651.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7]
gi|324018703|gb|EGB87922.1| type IV pilus secretin PilQ [Escherichia coli MS 117-3]
gi|332996422|gb|EGK16049.1| transport protein hofQ [Shigella flexneri VA-6]
gi|332996664|gb|EGK16289.1| transport protein hofQ [Shigella flexneri K-272]
Length = 386
Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats.
Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + +I ++ + + +
Sbjct: 66 HSIAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|300918298|ref|ZP_07134902.1| general secretion pathway protein D [Escherichia coli MS 115-1]
gi|300414559|gb|EFJ97869.1| general secretion pathway protein D [Escherichia coli MS 115-1]
Length = 650
Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 107/295 (36%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S+ +K V+ L+I QV ++ I EV+
Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSAQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
+G Q + + + G S +
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595
>gi|301021125|ref|ZP_07185165.1| general secretion pathway protein D [Escherichia coli MS 196-1]
gi|299881655|gb|EFI89866.1| general secretion pathway protein D [Escherichia coli MS 196-1]
Length = 654
Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
+G Q + + + G S +
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGLTSANPAWDMFSAYNGMAA 424
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599
>gi|71733370|ref|YP_272697.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71553923|gb|AAZ33134.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 701
Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats.
Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460
Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
D KQ+G + + ++SG + ++
Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 520
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + L A+E+ +++P + ++A G + Y+ SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V+ + + L TP + RI + ++ EP +P + + + V + G
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691
>gi|71280718|ref|YP_271238.1| general secretion pathway protein D [Colwellia psychrerythraea 34H]
gi|71146458|gb|AAZ26931.1| general secretion pathway protein D [Colwellia psychrerythraea 34H]
Length = 697
Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats.
Identities = 70/391 (17%), Positives = 135/391 (34%), Gaps = 69/391 (17%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEM-----VSDTV-VLHGMV 151
++ +++ ++ +A L L + ++ N RV D V VL G+
Sbjct: 231 IVADDRSNSVIVSGEVKARERVARLVKRLDSELESNGNTRVYYLKYSKAEDLVKVLQGVS 290
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQV 196
+I + + + A+ S+ + V+ L++ QV
Sbjct: 291 DSIASETTTAKTKTRSSKKRDVSIEAHESTNALVITAQPDMLRSLEAVIRQLDVR-RAQV 349
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------------- 240
++ I EV +G Q + A
Sbjct: 350 LVEAIIVEVFESDGVSLGVQWYNEAGGFTQFTNGPASISSVAAGVQAAEGEPATKVTTID 409
Query: 241 -----------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
G + + + + ++ A+ T LA P++
Sbjct: 410 ANGNPVISENPSTDGDYSILAQVLGNVSGMMFGIAKNDWGAIVSAVSSDTNSNILATPSI 469
Query: 278 TAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
T + + A F G + T S++ +V + G+ L TP V + L I
Sbjct: 470 TTLDNEEAYFIVGQEVPIITGSATGSNNANPFQTVDRQEVGIKLRVTPQVNEGNAVQLII 529
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ EVS S R+ TTV SG T++L GL+ +D+Q+ + +P+L IP
Sbjct: 530 EQEVSSVSGTTGVD--ISINKREIKTTVMADSGDTVILGGLIDEDVQESVQKVPILGDIP 587
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA 423
I+G LF+++ + + + + +V+ A
Sbjct: 588 IIGHLFKSTSNSTRKRNLMVFLRATIVRDSA 618
>gi|323179085|gb|EFZ64659.1| transport protein hofQ [Escherichia coli 1180]
Length = 377
Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ + + +I ++ + + +
Sbjct: 57 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 116
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 117 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 175
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 176 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 235
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 236 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 295
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 296 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 355
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 356 DGKEDERRELVVFITPRLV 374
>gi|320180160|gb|EFW55099.1| General secretion pathway protein D [Shigella boydii ATCC 9905]
Length = 654
Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats.
Identities = 62/295 (21%), Positives = 108/295 (36%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDR--- 253
+G Q S + + G S + + +
Sbjct: 365 NGLNLGVQWSNKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424
Query: 254 ----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599
>gi|56459478|ref|YP_154759.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
gi|56178488|gb|AAV81210.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
Length = 557
Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 101/259 (38%), Gaps = 24/259 (9%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSE 241
+ +L + QV L+ I EV + Q G S S G + +
Sbjct: 274 ITVLESRLQRQVILEARIIEVTLNDGYQQGINWSDIYSGNAGFGVDFNGVTPSNATSAAI 333
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---- 297
GG F + D +F ++ L+ ++ L+ P ++A + Q A G + T
Sbjct: 334 GGLFGLTYTDDGNNFSGMIEMLQTQGTVQVLSNPRVSASNNQKAVIKIGEDEYFVTDVTS 393
Query: 298 --------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
SSS T G+ L TP + G + L + V E +
Sbjct: 394 RTVLNTGGASSSDSDIEFTPFFSGISLDVTPQISDDGEVILHVHPSVVETSEQEKVITVS 453
Query: 350 S---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+R++DT V+ +G +VL GL++ + +PLL IP+LG LF N
Sbjct: 454 GEESVLPLARSNIRESDTIVKARNGEIVVLGGLMQTTNSEEVGKVPLLGDIPLLGELFTN 513
Query: 401 SRFNREETEIFIAATPFLV 419
R +E+ E+ I P +V
Sbjct: 514 RRNRQEKKELVILLKPTVV 532
>gi|322515010|ref|ZP_08068020.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976]
gi|322118999|gb|EFX91171.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976]
Length = 431
Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats.
Identities = 44/248 (17%), Positives = 100/248 (40%), Gaps = 13/248 (5%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------------DFGGKF 238
+Q+ ++ I + + L+++G + + ++G K + +
Sbjct: 172 RPTEQIAIEARIVTISSENLQELGVRWGMFSPANGHHKIAGSLEANGLPNTNHLNVNFPV 231
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ ++ + L ALE+ + +A P L + + AS G + Y
Sbjct: 232 NNAASLALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQGTEIPYVLY 291
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKAD 357
+ ++ + + L TP + + +I L + + P + + + ++ +
Sbjct: 292 NRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPNSTSSTVHGLVTIDKQELN 351
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T V G TIVL G+ + + ++ +P+L IP++ LF +S + E+ I TP+
Sbjct: 352 TQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVIKKLFSHSSDKISKRELVIFVTPY 411
Query: 418 LVKPVAMR 425
+VK +
Sbjct: 412 IVKNGKPQ 419
>gi|77456637|ref|YP_346142.1| type II and III secretion system protein [Pseudomonas fluorescens
Pf0-1]
gi|77380640|gb|ABA72153.1| pilus secretin [Pseudomonas fluorescens Pf0-1]
Length = 692
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 64/350 (18%), Positives = 135/350 (38%), Gaps = 28/350 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ ++ IA L R + + +D L V
Sbjct: 338 RKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 394
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + +++ L+I QV ++ I E
Sbjct: 395 TSAEAKVDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVR-QVMIEARIVEANV 453
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGG-------------------KFVSEGGDFSVK 248
D K +G + + + G + G V+ +
Sbjct: 454 DYDKSLGVRWGGSIQNKGNWNTSGVSNGSSTTIGTPGSTSTNSPFVDMGTVNNTSGIGIA 513
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
+ D + L A+E+ +++P + ++A G + Y+ SS+GATSV+
Sbjct: 514 FITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQEA-SSSGATSVS 572
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
+ + L TP + RI + ++ EP D+P + + + V + G TI
Sbjct: 573 FKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETI 632
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V+ G+ + ++ + +P L +P LG LFR + +++E+ + TP +
Sbjct: 633 VIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRI 682
>gi|330964738|gb|EGH64998.1| type II and III secretion system protein:NolW-like protein
[Pseudomonas syringae pv. actinidiae str. M302091]
Length = 701
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 402 TSAESKAEERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460
Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
D KQ+G + + ++SG + + +
Sbjct: 461 DYNKQLGVRWGGSTNTSGSGKWTTYGLDDNGDEAGNTSGNLTSNVPFVDLGAAGATSGIG 520
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + L A+E+ +++P + ++A G + Y+ SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V+ + + L TP + RI + ++ EP +P + + + V + G
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691
>gi|300937316|ref|ZP_07152157.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1]
gi|300457639|gb|EFK21132.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1]
Length = 386
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + NI ++ + + +
Sbjct: 66 HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSTLEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|78484984|ref|YP_390909.1| type II and III secretion system protein [Thiomicrospira crunogena
XCL-2]
gi|78363270|gb|ABB41235.1| Type II secretion pathway protein D homolog [Thiomicrospira
crunogena XCL-2]
Length = 569
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 65/295 (22%), Positives = 122/295 (41%), Gaps = 28/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN---IAGEDQVTLKVTIAEVRRD 208
+ ++ + + ++V N L+ QV ++ T+ EV
Sbjct: 254 SASKSRKQFQNVVVNREAGMLSVYTTAKKHQQVKNYLDSSLNRTNKQVLIEATVVEVELS 313
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERAT 267
Q G S S+SG S + G +S+ +FS+ + ++F + L++
Sbjct: 314 DQYQAGVDWSAVNSNSGGSSDISQSLLGTNLSKDPNFSINLSSIGTWNFNIGIKMLQQFG 373
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------------STGATSVTTHDYGVV 315
+ L+ P + A++ Q+A +Y TV +T T+V T G +
Sbjct: 374 DAKVLSSPKIMAMNNQAALLKVVNNEVYFTVEVNRESATASSAGVTTYETTVHTVPVGFM 433
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPS 364
+H TP +S I L I+ +S V VN + +P + R+ D+ + L +
Sbjct: 434 MHVTP-FISDDEISLNIRPTLSRIVGYVNDPNPDLARENIESKVPIIQEREMDSVLRLRN 492
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
T ++ GL++D ++G+P LS +P +G LF ++E+ I P +V
Sbjct: 493 RQTAIIGGLIQDTHDNQRQGVPGLSDLPWIGDLFSYRDDTVSKSELIIFIRPIIV 547
>gi|194439979|ref|ZP_03072038.1| general secretion pathway protein D [Escherichia coli 101-1]
gi|307140008|ref|ZP_07499364.1| general secretory pathway component, cryptic [Escherichia coli
H736]
gi|331644021|ref|ZP_08345150.1| general secretion pathway protein D [Escherichia coli H736]
gi|606259|gb|AAA58122.1| ORF_o654 [Escherichia coli str. K-12 substr. MG1655]
gi|194421087|gb|EDX37115.1| general secretion pathway protein D [Escherichia coli 101-1]
gi|315137900|dbj|BAJ45059.1| general secretion pathway protein D [Escherichia coli DH1]
gi|323959524|gb|EGB55177.1| general secretion pathway protein D [Escherichia coli H489]
gi|323970129|gb|EGB65403.1| general secretion pathway protein D [Escherichia coli TA007]
gi|331036315|gb|EGI08541.1| general secretion pathway protein D [Escherichia coli H736]
gi|332345271|gb|AEE58605.1| general secretion pathway protein GspD [Escherichia coli UMNK88]
Length = 654
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
+G Q + + + G S +
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599
>gi|254038486|ref|ZP_04872542.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
gi|226838992|gb|EEH71015.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
Length = 654
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
+G Q + + + G S +
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599
>gi|296446147|ref|ZP_06888095.1| general secretion pathway protein D [Methylosinus trichosporium
OB3b]
gi|296256341|gb|EFH03420.1| general secretion pathway protein D [Methylosinus trichosporium
OB3b]
Length = 785
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 67/304 (22%), Positives = 126/304 (41%), Gaps = 22/304 (7%)
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
V + AV+ ++ + + KV+ L++ +QV ++ TIAEV +
Sbjct: 458 VSDDGRYKFAVDDAKNAIVVLATPEDYKRVL-KVVETLDV-LPNQVFIEATIAEVTLNDD 515
Query: 211 KQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF----------SFETV 259
G + + +S G + G + V F + +
Sbjct: 516 LSFGVRWFLQKNASMGAFSDGDTGTPAANDTLGNNLLGAAVGAAFPGFAYAVRAANTQVT 575
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------THDYG 313
L AL + T + ++ P+LT + + A G Q T++ + VT D G
Sbjct: 576 LSALNQITNVNIISTPSLTVLDNRQAVLQVGDQVPVTTLTGANTNGGVTTFNSVNYRDTG 635
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAG 372
V+L TP + GR+ L ++ EVS G + P+ + R+ T V + +++L G
Sbjct: 636 VILSITPHINESGRVMLELEQEVSNVASGTSATSTTPTIKQRRVKTQVVVNDSESLMLGG 695
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
L++D + IP++ IP+ G F++ + +TE+ I TP +V+ +A + D
Sbjct: 696 LIQDSSSRGSSQIPVIGDIPLFGNAFKSKTNSAGKTELLIMITPHVVRTLA--EARDITD 753
Query: 433 HYSV 436
+
Sbjct: 754 EFKR 757
>gi|298485082|ref|ZP_07003178.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298160334|gb|EFI01359.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 718
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 63/352 (17%), Positives = 133/352 (37%), Gaps = 30/352 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 362 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 418
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 419 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 477
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGG---------------------KFVSEGGDFS 246
D KQ+G + + ++SG K
Sbjct: 478 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIG 537
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + L A+E+ +++P + ++A G + Y+ SS+GAT+
Sbjct: 538 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 596
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V+ + + L TP + RI + ++ EP +P + + + V + G
Sbjct: 597 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGE 656
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP +
Sbjct: 657 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 708
>gi|330877965|gb|EGH12114.1| type II and III secretion system protein:NolW-like protein
[Pseudomonas syringae pv. morsprunorum str. M302280PT]
Length = 701
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 402 TSAESKAEERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460
Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
D KQ+G + + ++SG + + +
Sbjct: 461 DYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAGNTSGNLTSNVPFVDLGAAGATSGIG 520
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + L A+E+ +++P + ++A G + Y+ SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V+ + + L TP + RI + ++ EP +P + + + V + G
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691
>gi|253699252|ref|YP_003020441.1| general secretion pathway protein D [Geobacter sp. M21]
gi|251774102|gb|ACT16683.1| general secretion pathway protein D [Geobacter sp. M21]
Length = 635
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 15/255 (5%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+V+ L+ QV ++ IAEV + K++G Q + +S + S F G
Sbjct: 341 QVIQKLD-RRSRQVFVQAMIAEVSANKAKELGVQWGVIAGASNGTLSTVGTFDPFGAVAG 399
Query: 243 GDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
+++ F L AL A+ L+ P + + A G
Sbjct: 400 LSGALQLADTLGITPPDGGVALFPATLKALHSNGALNVLSTPNIMTSDNKEAEIFVGENV 459
Query: 294 LYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDM 348
+ + ++ T S+ D G++L P + I L I E+S G
Sbjct: 460 PFLSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYIKLDIYQEISAVKDFGTATNPN 519
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
R A T+V + + T+++ GL++D Q + IPLL IP+LG LF+ R R++T
Sbjct: 520 LGSTKRSAKTSVVVKNTDTVIIGGLIQDTDQVTESKIPLLGDIPLLGWLFKTKRTTRDKT 579
Query: 409 EIFIAATPFLVKPVA 423
+ I TP ++K
Sbjct: 580 NLLIMLTPRIIKDAR 594
>gi|254360608|ref|ZP_04976757.1| competence protein E [Mannheimia haemolytica PHL213]
gi|153091148|gb|EDN73153.1| competence protein E [Mannheimia haemolytica PHL213]
Length = 437
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 100/241 (41%), Gaps = 13/241 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFV 239
+Q+ ++ I + + L+++G + I +G + + +
Sbjct: 185 TEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGRLEGNGLNNVTNNLNVNFPIT 244
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
++ + L ALE+ ++ +A P L + + AS G + Y +
Sbjct: 245 GGASAVLQVSSINSRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYN 304
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + AT V + + L P + + +I L + + P + + + ++ +T
Sbjct: 305 TKSEATDVEFKEAVLGLEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQ 364
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V G TIVL G+ + Q+ ++ +P+L IP + LF +R + E+ I TP+++
Sbjct: 365 VFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIKRLFSQTRDKISKRELVIFVTPYIL 424
Query: 420 K 420
+
Sbjct: 425 Q 425
>gi|227329158|ref|ZP_03833182.1| putative outer membrane porin HofQ [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 424
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 76/437 (17%), Positives = 161/437 (36%), Gaps = 37/437 (8%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M+ L R + L + + A+ + I + +++++ + +
Sbjct: 3 MKMLCRVAAWSWLLLLTAPFQASAESSVSMAFEDSPIPRVLQALADHQQLNVVIAPGVTG 62
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ + + D + D+V+ +G+ +V +G ++ +
Sbjct: 63 NLSLRLAD--IPWEQALDIVLR-----------MGKLSV---ERNGNVLMVFPADHLESL 106
Query: 121 AHLE----MTLRRFIADSNIRV--------EMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
+ + NI V E+ + G + + + S + + T L
Sbjct: 107 QKERDEHAAEQAQKLPLHNISVALQYADATEVAASVQAQRGTLLSTRGSVTVDKRTNTLL 166
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
+ + + L++ QV L I + + L+ +G +
Sbjct: 167 IRDTEEALTQL--EPWVKELDLPL-AQVQLAAHIVTISSEHLQALGVNWGLGEGDVANKA 223
Query: 229 SFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+F + + L+ + L ALE+ + + +A P L Q+A
Sbjct: 224 LRLNNFNVGLPVDTPAVNAGFHLARLNGRLLDLELMALEQESQVEIIASPRLFTAHQQTA 283
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-- 343
S G + Y+ S ++G+TS+ + + + TP +L GRI L ++ + P +
Sbjct: 284 SIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQ 343
Query: 344 -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ G+ + ++ T V + G TIVL G+ + + +PLL ++P+ G LFRN
Sbjct: 344 GDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQQKKNSDRQVPLLGEVPVFGHLFRNHT 403
Query: 403 FNREETEIFIAATPFLV 419
E+ I TP L+
Sbjct: 404 QQHTRRELVIFITPTLI 420
>gi|170018439|ref|YP_001723393.1| general secretion pathway protein D [Escherichia coli ATCC 8739]
gi|188495544|ref|ZP_03002814.1| general secretion pathway protein D [Escherichia coli 53638]
gi|169753367|gb|ACA76066.1| general secretion pathway protein D [Escherichia coli ATCC 8739]
gi|188490743|gb|EDU65846.1| general secretion pathway protein D [Escherichia coli 53638]
Length = 654
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
+G Q + + + G S +
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599
>gi|66043674|ref|YP_233515.1| type II and III secretion system protein:NolW-like:NolW-like
[Pseudomonas syringae pv. syringae B728a]
gi|63254381|gb|AAY35477.1| type II and III secretion system protein:NolW-like:NolW-like
[Pseudomonas syringae pv. syringae B728a]
Length = 718
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 52/257 (20%), Positives = 105/257 (40%), Gaps = 23/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
++++ L+I QV ++ I E D KQ+G + + ++SG K
Sbjct: 454 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAG 512
Query: 237 ---------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ V + + L A+E+ +++P +
Sbjct: 513 NTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 572
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP
Sbjct: 573 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 631
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR
Sbjct: 632 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 691
Query: 402 RFNREETEIFIAATPFL 418
+ ++E+ + TP +
Sbjct: 692 VVSESKSELLVFLTPRI 708
>gi|306816332|ref|ZP_07450470.1| general secretory pathway component, cryptic [Escherichia coli
NC101]
gi|305850728|gb|EFM51185.1| general secretory pathway component, cryptic [Escherichia coli
NC101]
Length = 654
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364
Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249
+G Q + + + + +
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599
>gi|270157382|ref|ZP_06186039.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968]
gi|269989407|gb|EEZ95661.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968]
Length = 701
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 27/262 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241
K++ L++ + QV ++ I EV +D + +G + ++ A+ + V+
Sbjct: 422 KLIKELDVPVK-QVLIEARIVEVTKDFAQDLGIRWGVSKPQHLSGTLAGANQLAQGVAPA 480
Query: 242 ------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
++ + D + L ALE ++ P L
Sbjct: 481 DVTPFTDRLNLDLVAAPLTKANPATVGIALAQLGDNILLDLELSALESEGLAELISSPRL 540
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
+ Q A SG + Y+ +SS GAT+V + L P + +I + ++
Sbjct: 541 ITANQQPALIDSGQEIPYQQSTSS-GATAVAFKKAVLSLKVIPQITPDNKILMDLKINQD 599
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ +P+ ++ T V + +G TIVL G+ + D + +P ++P++G L
Sbjct: 600 LALPNQTYNGVPAIATKEIQTNVLVSNGQTIVLGGIYQQDKSKTITRVPFFGQLPVVGNL 659
Query: 398 FRNSRFNREETEIFIAATPFLV 419
F+N++ E+ I TP ++
Sbjct: 660 FKNTQIGVHNDELLIFITPKII 681
>gi|170719573|ref|YP_001747261.1| type IV pilus secretin PilQ [Pseudomonas putida W619]
gi|169757576|gb|ACA70892.1| type IV pilus secretin PilQ [Pseudomonas putida W619]
Length = 422
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 48/236 (20%), Positives = 97/236 (41%), Gaps = 2/236 (0%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+++ L++ QV ++ I E D +G + S P+ G
Sbjct: 179 QLVAQLDVPVR-QVEIEARIVEANVDYENSLGVRWGPRLYSEAPALGKDVFVDLGMERAG 237
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ + L A+E+ +++P + + ++A G + Y+ + S
Sbjct: 238 SSIGFGVLRGGVLLDLELSAMEKTGNGEIISQPKVVTANNETARILKGTEVPYQETTKS- 296
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
GATSVT + + L TP + G++ + ++ EP D+P R + + V +
Sbjct: 297 GATSVTFREASLSLEVTPQITPDGKVIMTVKVTKDEPDFVNALNDVPPIRKNEVNAKVRV 356
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
G TIV+ G+ + + +P +P +G LFR +++E+ + TP +
Sbjct: 357 ADGETIVIGGVYSTTQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 412
>gi|224823626|ref|ZP_03696735.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002]
gi|224604081|gb|EEG10255.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002]
Length = 691
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 56/242 (23%), Positives = 98/242 (40%), Gaps = 13/242 (5%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKSFAADFGGKFVSE 241
QV ++ I E + +++G + S G+ +G + +
Sbjct: 447 KQVVIEARIVEATDNFSRELGVKLSYDRIGRLSLGGNIAGAGNGSLTDTLVNLPTNSAAT 506
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G +V L AL+ + + +A P + A+ G + Y+ +SS
Sbjct: 507 GTIGAVYKAGASNLIGLELQALQTESQGKIVASPRVLTSDRTEATIEQGQEIPYQEATSS 566
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
GATS + + L P + I + IQ + +PS + +K +T V
Sbjct: 567 -GATSTSFKKAVLSLKVKPQITPDSTILMDIQINNDTADFANLSNGVPSLKTKKVNTQVL 625
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ +GGT+V+ G+ D + +PLL IP+LGALFR+ TE+ + TP +V
Sbjct: 626 VENGGTVVIGGIYTQDENEGLSKVPLLGDIPLLGALFRSKTKKDNRTELLVFLTPRVVSD 685
Query: 422 VA 423
Sbjct: 686 FD 687
>gi|323934477|gb|EGB30885.1| general secretion pathway protein D [Escherichia coli E1520]
Length = 654
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
+G Q + + + G S +
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599
>gi|289164222|ref|YP_003454360.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae
NSW150]
gi|288857395|emb|CBJ11223.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae
NSW150]
Length = 701
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 27/262 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241
K++ L++ + QV ++ I EV +D + +G + ++ A+ + V+
Sbjct: 422 KLIKELDVPVK-QVLIEARIVEVTKDFAQDLGIRWGVSKPQHLSGTLAGANQLAQGVAPA 480
Query: 242 ------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
++ + D + L ALE ++ P L
Sbjct: 481 DVTPFTDRLNLDLVAAPLTKANPATVGIALAQLGDNILLDLELSALESEGLAELISSPRL 540
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
+ Q A SG + Y+ +SS GAT+V + L P + +I + ++
Sbjct: 541 ITANQQPALIDSGQEIPYQQSTSS-GATAVAFKKAVLSLKVIPQITPDNKILMDLKINQD 599
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ +P+ ++ T V + +G TIVL G+ + D + +P ++P++G L
Sbjct: 600 LALPNQTYNGVPAIATKEIQTNVLVSNGQTIVLGGIYQQDKSKTITRVPFFGQLPVVGNL 659
Query: 398 FRNSRFNREETEIFIAATPFLV 419
F+N++ E+ I TP ++
Sbjct: 660 FKNTQIGVHNDELLIFITPKII 681
>gi|293412744|ref|ZP_06655412.1| general secretion pathway protein D [Escherichia coli B354]
gi|291468391|gb|EFF10884.1| general secretion pathway protein D [Escherichia coli B354]
Length = 650
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
+G Q + + + G S +
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595
>gi|157162799|ref|YP_001460117.1| general secretion pathway protein D [Escherichia coli HS]
gi|157068479|gb|ABV07734.1| general secretion pathway protein D [Escherichia coli HS]
Length = 654
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
+G Q + + + G S +
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599
>gi|331674826|ref|ZP_08375583.1| general secretion pathway protein D [Escherichia coli TA280]
gi|331067735|gb|EGI39133.1| general secretion pathway protein D [Escherichia coli TA280]
Length = 654
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 58/294 (19%), Positives = 101/294 (34%), Gaps = 26/294 (8%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ ++ + K V+ L+I QV ++ I EV+
Sbjct: 307 SSTSAMDNVAITADEQTNSLVITADQPVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGN 365
Query: 210 LKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKGV 250
+G Q + + + G S +
Sbjct: 366 GLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAG 425
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATS 306
+ +L AL LA P++ + + ASF G + S + +
Sbjct: 426 FFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNT 485
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 486 VERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGE 545
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 546 TVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599
>gi|26249920|ref|NP_755960.1| general secretion pathway protein D [Escherichia coli CFT073]
gi|91212762|ref|YP_542748.1| general secretion pathway protein D [Escherichia coli UTI89]
gi|117625603|ref|YP_858926.1| putative general secretion pathway protein D precursor [Escherichia
coli APEC O1]
gi|227883456|ref|ZP_04001261.1| general secretion pathway protein D precursor [Escherichia coli
83972]
gi|300979896|ref|ZP_07174772.1| general secretion pathway protein D [Escherichia coli MS 45-1]
gi|301046096|ref|ZP_07193274.1| general secretion pathway protein D [Escherichia coli MS 185-1]
gi|26110348|gb|AAN82534.1|AE016767_294 Probable general secretion pathway protein D precursor [Escherichia
coli CFT073]
gi|91074336|gb|ABE09217.1| probable general secretion pathway protein D [Escherichia coli
UTI89]
gi|115514727|gb|ABJ02802.1| putative general secretion pathway protein D precursor [Escherichia
coli APEC O1]
gi|227839600|gb|EEJ50066.1| general secretion pathway protein D precursor [Escherichia coli
83972]
gi|294492078|gb|ADE90834.1| general secretion pathway protein D [Escherichia coli IHE3034]
gi|300301922|gb|EFJ58307.1| general secretion pathway protein D [Escherichia coli MS 185-1]
gi|300409407|gb|EFJ92945.1| general secretion pathway protein D [Escherichia coli MS 45-1]
gi|307628360|gb|ADN72664.1| general secretory pathway component, cryptic [Escherichia coli
UM146]
gi|315284600|gb|EFU44045.1| general secretion pathway protein D [Escherichia coli MS 110-3]
gi|315292358|gb|EFU51710.1| general secretion pathway protein D [Escherichia coli MS 153-1]
gi|323950239|gb|EGB46121.1| general secretion pathway protein D [Escherichia coli H252]
gi|323954552|gb|EGB50335.1| general secretion pathway protein D [Escherichia coli H263]
Length = 654
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364
Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249
+G Q + + + + +
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599
>gi|218560386|ref|YP_002393299.1| general secretory pathway component, cryptic [Escherichia coli S88]
gi|218367155|emb|CAR04929.1| general secretory pathway component, cryptic [Escherichia coli S88]
gi|307555412|gb|ADN48187.1| general secretory pathway component [Escherichia coli ABU 83972]
Length = 650
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 302 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360
Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249
+G Q + + + + +
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595
>gi|311277674|ref|YP_003939905.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1]
gi|308746869|gb|ADO46621.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1]
Length = 412
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 81/396 (20%), Positives = 153/396 (38%), Gaps = 45/396 (11%)
Query: 63 PVDVQDVLVSDPTKADVV----VHSPRTMYLFGKNVGQANV------------ILIGHDG 106
V+ + V + A V+ R + + + G ++ ++ G
Sbjct: 20 KVNAVTLTVDEVPVAQVLQTLAALDGRNIVIGPEVDGVLSLQLTNIPWMQALQTVLSSAG 79
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
M + ++ + + + E T+ L G A EL++
Sbjct: 80 LTMTSQGAVLFIHSHAWQEAKQSRLETEQ---EKRRQTLPLRGQ-SIALRYADAGELAKA 135
Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGED------------------QVTLKVTIAEVRRD 208
+ + + K N L + ++ QV L I +
Sbjct: 136 --GEKLLSPRGAMTVDKRTNRLLVRDDERHLSDIQTWAEEMDKPVGQVELAAHIVTMNEK 193
Query: 209 ILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
L+++G + ++ + S P + + + G ++ E L ALE+
Sbjct: 194 SLRELGVKWTLADADSPPGRGKFTTLSSDLSVTDATSRAGFNIGRINGRLLEFELSALEQ 253
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+ +A P L A Q AS G + Y+ S +GATSV + + + TPTVL
Sbjct: 254 QQQLEIIASPRLLASHLQPASIKQGSEIPYQVSSGDSGATSVEFKEAVLGMEVTPTVLDD 313
Query: 326 GRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
R+ L+++ + P V+ G++ + ++ +T VE+ SG T+ L G+ + ++
Sbjct: 314 RRVRLKLRISENMPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSQKNKSARD 373
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GIPLL IP LG LFR+ + E E+ + TP ++
Sbjct: 374 GIPLLGDIPWLGQLFRHDGKDHERRELVVFITPRII 409
>gi|324111701|gb|EGC05681.1| type IV pilus secretin PilQ [Escherichia fergusonii B253]
Length = 412
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 81/417 (19%), Positives = 150/417 (35%), Gaps = 29/417 (6%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISI--GLNKVIILQVPVDVQDVLVSDPTK 76
+ + LP + A A + + + + + + I+ P V +
Sbjct: 6 AAILMMALPVAQAAKPAKVTLVVDDAPVAQVLQALAEQERQNIVVSPDVSGLVSLHLIDV 65
Query: 77 -----ADVVVHSPRTMYLFGKNVGQA---NVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
VV S L + G + ++ + +E
Sbjct: 66 PWKQALQTVVKSAG---LVSRQEGNILHIHSAAWQNENAARQEAEQARRLASLPVEHRAI 122
Query: 129 RFIADSNIRVEMVSDTVV-LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
+ ++ G + + R + N+ A ++ + ++
Sbjct: 123 ALQYADAAELAKAGGKLLSAKGSMTVDTRTNRLL---------LRDNKTALAALEHWISE 173
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
+++ QV L I + L+++G + + + V
Sbjct: 174 MDVP-VGQVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTTLSSDLAVATATTQV 232
Query: 248 K---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
G ++ + L ALE+ + +A P L A Q AS G + Y+ S +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
TSV + + + TPTVL GRI L++ V V+ + G++ + ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGEVLTIDKQEIETQVEV 352
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
SG T+ L G+ + K+ IPLL IP LG LF + E E+ + TP LV
Sbjct: 353 KSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENERRELVVFITPRLV 409
>gi|333013071|gb|EGK32447.1| transport protein hofQ [Shigella flexneri K-227]
Length = 386
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + +I ++ + + +
Sbjct: 66 HSIAWQNDNIARQESEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|323174021|gb|EFZ59649.1| transport protein hofQ [Escherichia coli LT-68]
Length = 386
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/331 (21%), Positives = 132/331 (39%), Gaps = 12/331 (3%)
Query: 100 ILIGHDGKQMLNLDILIERDI----AHLEMTLRRFIADSN--IRVEMVSDTVVLHGMVRT 153
++ +G + I + + + + + N I ++ + +
Sbjct: 54 LITRQEGNILSVHSIAWQNNNIARQEAEQARAQANLPLENCSITLQYADAGELAKAGEKL 113
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ T N+ A S+ ++ + +++ QV L I + L+++
Sbjct: 114 LSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLREL 172
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIR 270
G + ++ + G V G ++ + L ALE+ +
Sbjct: 173 GVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLD 232
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+A P L A Q AS G + Y+ S +GATSV + + + TPTVL GRI L
Sbjct: 233 IIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRL 292
Query: 331 RIQ--TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
++ V V+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL
Sbjct: 293 KLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLL 352
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP G LFR+ E E+ + TP LV
Sbjct: 353 GDIPWFGQLFRHDGKEDERRELVVFITPRLV 383
>gi|331684967|ref|ZP_08385553.1| general secretion pathway protein D [Escherichia coli H299]
gi|331077338|gb|EGI48550.1| general secretion pathway protein D [Escherichia coli H299]
Length = 654
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
+G Q + + + G S +
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599
>gi|302189475|ref|ZP_07266148.1| type II and III secretion system protein:NolW-like:NolW-like
[Pseudomonas syringae pv. syringae 642]
Length = 701
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 53/257 (20%), Positives = 104/257 (40%), Gaps = 23/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
++++ L+I QV ++ I E D KQ+G + + SG S A
Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGRTNISGTSNWSAGGLDNRGDEAG 495
Query: 237 ---------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ V + + L A+E+ +++P +
Sbjct: 496 NTGNSLGPNIPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP
Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR
Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674
Query: 402 RFNREETEIFIAATPFL 418
+ ++E+ + TP +
Sbjct: 675 VVSESKSELLVFLTPRI 691
>gi|323142233|ref|ZP_08077067.1| bacterial type II/III secretion system short domain protein
[Phascolarctobacterium sp. YIT 12067]
gi|322413296|gb|EFY04181.1| bacterial type II/III secretion system short domain protein
[Phascolarctobacterium sp. YIT 12067]
Length = 364
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 7/239 (2%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
QVTL+ I V R+ K +G + ++ D F
Sbjct: 113 ATRQVTLEAKIIAVSREDSKNMGVRWDWDTIPQRAQETNNGDSDSSNYDGSFKFWRGFAF 172
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTT 309
F L+AL + R LA P + I G+ AS G +T SS T+
Sbjct: 173 ---RFNATLNALINSGKARILATPRIITIPGKEASIFIGDHIPVQTEKHDSSGSYTATEY 229
Query: 310 HDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
D G+ L + P + G+ + + TEVS PV+ ++ R ADT V + SG T+
Sbjct: 230 LDAGIKLQYAPIISEDGKMVTASVHTEVSTPVL-ISELKNYRITSRTADTNVRMYSGETL 288
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
V+ GL+ ++ Q+ + +P LSKIP+LG LF+N + +TE+ + TP + + A +
Sbjct: 289 VIGGLISEEQQRTMQKVPFLSKIPLLGELFKNRSRSHNKTEVLLLLTPHITEAGASPAI 347
>gi|149378291|ref|ZP_01896001.1| Type II secretory pathway, component PulD [Marinobacter algicola
DG893]
gi|149357425|gb|EDM45937.1| Type II secretory pathway, component PulD [Marinobacter algicola
DG893]
Length = 650
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 88/468 (18%), Positives = 163/468 (34%), Gaps = 69/468 (14%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN-----KVIILQVPVDV 66
+ L L + ANA +++ I + ++I L+ +V ++Q+
Sbjct: 142 LVPILRPLVAKYGHLAGVAAANALIVSDHSSNIQRIEQIVRELDSPSKYEVEVIQLEEAW 201
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDILIERDIA 121
V D + +P + G+ G +V + +L D +
Sbjct: 202 ----VGD-MVELLQELAPAEL---GQGGGDNAARKYSVTADERSNRLILRGDETFRDKMR 253
Query: 122 HLEMTLRRFIADSNIR-------VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
L L + A + + T +L G++ + + SGRN
Sbjct: 254 ELIRKLDQPSATGGTTKVIRLSHADAENLTEILKGVMGEVVKESSGGSGGAGGSAGSGRN 313
Query: 175 QYANSSSKKVMNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGFQ 216
+ + + +N L + G QV ++ I E+ ++ + +G Q
Sbjct: 314 TNFSVFADEGLNALVVRGEPSMMQEAEMIVKALDVRRAQVMIEAAIVEISDELGQDLGVQ 373
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-------------------DRFSFE 257
++ S + +F S G + S+
Sbjct: 374 LALGDESGESTPVAGTNFNNVGRSLGDVLGAILSDSVIAPATGGITIGAGQRNENGVSWG 433
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTH 310
+L AL + A L+ P++ + Q + G ++T S+ T++
Sbjct: 434 VLLQALSTSAAANLLSTPSIITLDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERR 493
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
D G+ L TPT+ + G + L ++ V + R+ TTV G TIVL
Sbjct: 494 DIGLTLKVTPTISADGLVRLVVEQTTENIGDSVESASDIITNKREIKTTVLADDGETIVL 553
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
GL DD+Q K +PLL IP+LG LF + R + + + P +
Sbjct: 554 GGLTTDDLQVNKSKVPLLGDIPVLGRLFSSESERRVKRNLLVFLRPTI 601
>gi|88861010|ref|ZP_01135645.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
[Pseudoalteromonas tunicata D2]
gi|88816938|gb|EAR26758.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
[Pseudoalteromonas tunicata D2]
Length = 659
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 58/307 (18%), Positives = 116/307 (37%), Gaps = 48/307 (15%)
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
+ V+ ++T+++ ++I++ +R VE + + Q
Sbjct: 378 VSVDTRTNTLLIKDTAKSIENVRRMVETLDVAV-------------------------KQ 412
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------------------FAADFG 235
V ++ + VR + + +G + + + +
Sbjct: 413 VVIESRMVTVRDSVQEDLGIRWGFSDQQLTDGIAGTLAGAQKISNGVIPTLAERLNVNLA 472
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ + + D + L ALE+ +A P +T + + A G + Y
Sbjct: 473 VTNPAGSIGMHIAKLADGTLIDLELSALEQENKAEIIASPRITTANQKKARIEQGTEIPY 532
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRV 353
+SS GAT+V + L TP + ++ L + P + G+ +
Sbjct: 533 VQAASS-GATTVEFKKAVLSLEVTPHITPDNKVILDLVITQDTPGDTVQTPTGNAVAINT 591
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
++ T V + +G TIVL G+ + + +PLL IP LGALF+ + E+ E+ I
Sbjct: 592 QEIRTQVLVENGQTIVLGGIYQQQVINSSSKVPLLGDIPYLGALFKRTSEKTEKKELLIF 651
Query: 414 ATPFLVK 420
TP ++K
Sbjct: 652 VTPKILK 658
>gi|89110685|ref|AP_004465.1| general secretory pathway component, cryptic [Escherichia coli str.
K-12 substr. W3110]
gi|90111569|ref|NP_417784.4| general secretory pathway component, cryptic [Escherichia coli str.
K-12 substr. MG1655]
gi|170082844|ref|YP_001732164.1| general secretory pathway component, cryptic [Escherichia coli str.
K-12 substr. DH10B]
gi|238902416|ref|YP_002928212.1| general secretory pathway component, cryptic [Escherichia coli
BW2952]
gi|256025947|ref|ZP_05439812.1| general secretory pathway component, cryptic [Escherichia sp.
4_1_40B]
gi|300932218|ref|ZP_07147497.1| general secretion pathway protein D [Escherichia coli MS 187-1]
gi|300946547|ref|ZP_07160812.1| general secretion pathway protein D [Escherichia coli MS 116-1]
gi|300954740|ref|ZP_07167173.1| general secretion pathway protein D [Escherichia coli MS 175-1]
gi|301643855|ref|ZP_07243886.1| general secretion pathway protein D [Escherichia coli MS 146-1]
gi|14917006|sp|P45758|GSPD_ECOLI RecName: Full=Probable general secretion pathway protein D; Flags:
Precursor
gi|85676716|dbj|BAE77966.1| general secretory pathway component, cryptic [Escherichia coli str.
K12 substr. W3110]
gi|87082242|gb|AAC76350.2| general secretory pathway component, cryptic [Escherichia coli str.
K-12 substr. MG1655]
gi|169890679|gb|ACB04386.1| general secretory pathway component, cryptic [Escherichia coli str.
K-12 substr. DH10B]
gi|238861291|gb|ACR63289.1| general secretory pathway component, cryptic [Escherichia coli
BW2952]
gi|260447656|gb|ACX38078.1| general secretion pathway protein D [Escherichia coli DH1]
gi|300318291|gb|EFJ68075.1| general secretion pathway protein D [Escherichia coli MS 175-1]
gi|300453793|gb|EFK17413.1| general secretion pathway protein D [Escherichia coli MS 116-1]
gi|300460042|gb|EFK23535.1| general secretion pathway protein D [Escherichia coli MS 187-1]
gi|301077758|gb|EFK92564.1| general secretion pathway protein D [Escherichia coli MS 146-1]
gi|309703737|emb|CBJ03078.1| probable general secretion pathway protein D precursor [Escherichia
coli ETEC H10407]
gi|315618942|gb|EFU99525.1| general secretion pathway protein D [Escherichia coli 3431]
Length = 650
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
+G Q + + + G S +
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595
>gi|254163253|ref|YP_003046361.1| general secretory pathway component, cryptic [Escherichia coli B
str. REL606]
gi|253975154|gb|ACT40825.1| general secretory pathway component, cryptic [Escherichia coli B
str. REL606]
Length = 650
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
+G Q + + + G S +
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595
>gi|110643564|ref|YP_671294.1| general secretion pathway protein D precursor [Escherichia coli
536]
gi|191171536|ref|ZP_03033084.1| general secretion pathway protein D [Escherichia coli F11]
gi|300974004|ref|ZP_07172411.1| general secretion pathway protein D [Escherichia coli MS 200-1]
gi|331649123|ref|ZP_08350209.1| general secretion pathway protein D [Escherichia coli M605]
gi|331659615|ref|ZP_08360553.1| general secretion pathway protein D [Escherichia coli TA206]
gi|110345156|gb|ABG71393.1| probable general secretion pathway protein D precursor [Escherichia
coli 536]
gi|190908163|gb|EDV67754.1| general secretion pathway protein D [Escherichia coli F11]
gi|281180360|dbj|BAI56690.1| general secretion pathway protein D [Escherichia coli SE15]
gi|300309014|gb|EFJ63534.1| general secretion pathway protein D [Escherichia coli MS 200-1]
gi|312947876|gb|ADR28703.1| general secretion pathway protein D precursor [Escherichia coli
O83:H1 str. NRG 857C]
gi|315298623|gb|EFU57878.1| general secretion pathway protein D [Escherichia coli MS 16-3]
gi|324009016|gb|EGB78235.1| general secretion pathway protein D [Escherichia coli MS 57-2]
gi|324014941|gb|EGB84160.1| general secretion pathway protein D [Escherichia coli MS 60-1]
gi|330909367|gb|EGH37881.1| general secretion pathway protein D [Escherichia coli AA86]
gi|331041621|gb|EGI13765.1| general secretion pathway protein D [Escherichia coli M605]
gi|331052830|gb|EGI24863.1| general secretion pathway protein D [Escherichia coli TA206]
Length = 654
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364
Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249
+G Q + + + + +
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599
>gi|218691610|ref|YP_002399822.1| general secretory pathway component, cryptic [Escherichia coli
ED1a]
gi|218429174|emb|CAR10129.2| general secretory pathway component, cryptic [Escherichia coli
ED1a]
gi|222035034|emb|CAP77777.1| general secretion pathway protein D [Escherichia coli LF82]
Length = 650
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 302 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360
Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249
+G Q + + + + +
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595
>gi|255658549|ref|ZP_05403958.1| putative type IV pili biogenesis protein PilQ [Mitsuokella
multacida DSM 20544]
gi|260849353|gb|EEX69360.1| putative type IV pili biogenesis protein PilQ [Mitsuokella
multacida DSM 20544]
Length = 430
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 84/398 (21%), Positives = 148/398 (37%), Gaps = 45/398 (11%)
Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRT--------------MYLFGKNVGQANVIL 101
+ ++L + + +V D + A V + L G ++
Sbjct: 38 RSVLLSLARTAHENIVLDDSVAGTVTLHATEEPAKLLRMIAASKGLVLI--KEGSTYLVT 95
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
+ ++ + R + + ++ V+ G
Sbjct: 96 TMPRADALRSVHVYPVRHADP-----ADLAHAAELSLKSVAGDKTADGQETGTARRVLVD 150
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
+ + L + AN + KV+ L+ QV+L+ + + +D K++G + +
Sbjct: 151 SATNSVLFYGTAAEAANVA--KVVQQLD-RKPRQVSLEAKVLALSKDASKKLGVEWQWSS 207
Query: 222 SSSGPSKSFA------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
P G +GV F + + AL
Sbjct: 208 LPQYPDFETTYRHKGSANEVQEKEIKRHTQDGTVPGIIQFGRGPEGVPFEFYYSATIQAL 267
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHDYGVVLHFTPT 321
+ LA P +T + G+ A GG+ T V+++T T+ T G++L TP
Sbjct: 268 VTQGKAKMLARPNITTVQGREALINIGGEVPVPTQSVTNNTTTTTYTYRQAGIILRCTPR 327
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ GRI + TEVS P+ V ++ R ADTTV L G T+V+ GL+ D +
Sbjct: 328 IHEDGRITATVHTEVSSPLY-VEDIKAYRFQNRSADTTVSLRDGETMVIGGLIGSDESRT 386
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP L +PILG+ FR+ R +R E+EI I T ++
Sbjct: 387 LSKIPFLGDLPILGSFFRSVRQSRSESEIMIFLTAHVI 424
>gi|323164950|gb|EFZ50741.1| transport protein hofQ [Shigella sonnei 53G]
Length = 385
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ + + +I ++ + + +
Sbjct: 65 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 124
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 125 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 183
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 184 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 243
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 244 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 303
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 304 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 363
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 364 DGKEDERRELVVFITPRLV 382
>gi|271502312|ref|YP_003335338.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586]
gi|270345867|gb|ACZ78632.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586]
Length = 433
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 76/397 (19%), Positives = 147/397 (37%), Gaps = 40/397 (10%)
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
V VQ VL + AD + + + G ++ L +Q L++ + + +
Sbjct: 40 DVPVQRVLQA---LADHQQLN---LVVAPGVAGNISLNLQQVPWQQALDIILRMGQLTVE 93
Query: 123 LEMTLRRFIADSNIR---------VEMVSDTVVLHGMVRTIQDSQRAVELSE-TFLSQSG 172
+ ++ D+ ++ + L + T+Q ++ ++ +
Sbjct: 94 QQNSVMMVYPDTYVKDRQQKQEELAAKQRLQLPLQNLSVTLQYAEATEVVANLQSQRGTL 153
Query: 173 RNQYANSSSKKVMNLLNIAGED------------------QVTLKVTIAEVRRDILKQIG 214
+ N + K N L I QV L I + + LK +G
Sbjct: 154 LTERGNVTVDKRTNTLLIRDVASALEQIRPWIDALDKPLSQVQLAAHIVTISSEHLKALG 213
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRT 271
+ +S +F E + L+ + L ALE+ +
Sbjct: 214 VNWGLGEASIAGQAMQMNNFTVNLPVESPAINAGFHLAKLNGRLLDLELMALEQENEVEI 273
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+A P L Q+AS G + Y+ S ++G+TS+ + + + TP +L G+I L
Sbjct: 274 IASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPRILHGGQITLN 333
Query: 332 IQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ + P + G++ + ++ T V + G TIVL G+ + Q + +P L
Sbjct: 334 LLISQNMPGRAIKQGEGGEILAIDKQEIQTQVTVQDGETIVLGGIFQQQKNQGERQVPGL 393
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+P +G LFR + E+ I TP L++
Sbjct: 394 GALPGIGRLFRATSQQHTRRELVIFITPTLIQAAKRA 430
>gi|297519102|ref|ZP_06937488.1| outer membrane porin HofQ [Escherichia coli OP50]
gi|300907468|ref|ZP_07125113.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1]
gi|300931080|ref|ZP_07146434.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1]
gi|301302267|ref|ZP_07208399.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1]
gi|300400806|gb|EFJ84344.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1]
gi|300461100|gb|EFK24593.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1]
gi|300842430|gb|EFK70190.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1]
gi|315255979|gb|EFU35947.1| type IV pilus secretin PilQ [Escherichia coli MS 85-1]
gi|320199559|gb|EFW74149.1| Type IV pilus biogenesis protein PilQ [Escherichia coli EC4100B]
gi|323154220|gb|EFZ40423.1| transport protein hofQ [Escherichia coli EPECa14]
gi|323162775|gb|EFZ48612.1| transport protein hofQ [Escherichia coli E128010]
Length = 386
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ + + +I ++ + + +
Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|238752500|ref|ZP_04613975.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380]
gi|238709263|gb|EEQ01506.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380]
Length = 625
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 55/282 (19%), Positives = 111/282 (39%), Gaps = 18/282 (6%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+I+ ++ L T + + + +KV+ L++ QV ++ I E +
Sbjct: 291 SIKAHEQTNSLVITAVPKIMKEL------EKVIEKLDVR-RAQVLVEAIIVETQNGEGLN 343
Query: 213 IGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
+G Q + S + + + + +++ + AL +
Sbjct: 344 LGIQWANKFYGGVNFLPKPDSIKDNKSSENPVPMLITGLTAGFYKGNWDGLFTALATNSN 403
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLS 324
LA P++ + A F G + T + +T S++ GV+L P +
Sbjct: 404 NNILATPSIVTLDNMEAEFNVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINK 463
Query: 325 PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ L I+ EVS + + R + V + SG T+V+ GLL I +
Sbjct: 464 GDSVLLEIRQEVSSIADNSDINTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKINKT 523
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
+P L IP++GALFR S+ E++ + + P +++ +
Sbjct: 524 INKVPFLGDIPLIGALFRQSKERMEKSNLILFIKPTILRETS 565
>gi|289806224|ref|ZP_06536853.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 295
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 6/252 (2%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
N+ A + +K ++ +++ QV L I + L+++G + ++ ++ +
Sbjct: 42 DNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVT 100
Query: 233 DFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
V G ++ + L ALE+ + +A P L A Q AS
Sbjct: 101 TLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 160
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGD 347
G + Y+ S +GATSV + + + TPTVL GRI L++ V V+ G+
Sbjct: 161 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 220
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E
Sbjct: 221 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 280
Query: 408 TEIFIAATPFLV 419
E+ + TP LV
Sbjct: 281 RELVVFITPRLV 292
>gi|237798101|ref|ZP_04586562.1| type II and III secretion system protein:NolW-like protein
[Pseudomonas syringae pv. oryzae str. 1_6]
gi|331020953|gb|EGI01010.1| type II and III secretion system protein:NolW-like protein
[Pseudomonas syringae pv. oryzae str. 1_6]
Length = 701
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 53/257 (20%), Positives = 107/257 (41%), Gaps = 23/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------------K 228
++++ L+I QV ++ I E D KQ+G + + SG S
Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGRTNLSGSSKWSAGGLDNNGDEAG 495
Query: 229 SFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ + G + + V + + L A+E+ +++P +
Sbjct: 496 NTGNNLGPNIPFVDLGAANATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP
Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR
Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674
Query: 402 RFNREETEIFIAATPFL 418
+ ++E+ + TP +
Sbjct: 675 VVSESKSELLVFLTPRI 691
>gi|28872241|ref|NP_794860.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213969446|ref|ZP_03397583.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
tomato T1]
gi|28855495|gb|AAO58555.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213925817|gb|EEB59375.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
tomato T1]
Length = 718
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 62/352 (17%), Positives = 134/352 (38%), Gaps = 30/352 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 362 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 418
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 419 TSAESKAEERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 477
Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
D KQ+G + + ++S + A+
Sbjct: 478 DYNKQLGVRWGGSTNTSRNGKWTTYGLDDNGDEGGNTNANLTSNIPFVDLGAADATTGIG 537
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + L A+E+ +++P + ++A G + Y+ SS+GAT+
Sbjct: 538 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 596
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V+ + + L TP + RI + ++ EP +P + + + V + G
Sbjct: 597 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 656
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP +
Sbjct: 657 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 708
>gi|325265676|ref|ZP_08132365.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394]
gi|324982807|gb|EGC18430.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394]
Length = 705
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 97/264 (36%), Gaps = 29/264 (10%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSGPSK------ 228
++++ L++ + QV ++ I E + + +G + GS+ G
Sbjct: 434 QRLIEELDVPAK-QVMVEARIVEAADGVARDLGVKFGANRQGSTSWGSNWGNGVEANRRY 492
Query: 229 -------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+FA + S +V + L A+E +T++ P
Sbjct: 493 VGNGTGSGSNGGVNFAPNVNLPVSSATSSIAVIRSWASGALGLELSAMETDNLTKTISTP 552
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ + A G Q Y S G + + D + L TP + +I L I
Sbjct: 553 RVLTQDRKEAEIRQGTQIPYT-TRGSNGEVTTSFKDAILSLKVTPRITPDSKIILDITIN 611
Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
EP VN P R T + GGT+V+ G+ ++ + +P L IP+L
Sbjct: 612 KDEPDYTRVNVEGEPGITTRAVKTQAMIEDGGTLVVGGIYQEQMSNNISKVPFLGDIPVL 671
Query: 395 GALFRNSRFNREETEIFIAATPFL 418
G LF++ + E+ TP +
Sbjct: 672 GNLFKSRSRSHTRNELLFFITPRI 695
>gi|113869383|ref|YP_727872.1| pili assembly protein PilQ [Ralstonia eutropha H16]
gi|113528159|emb|CAJ94504.1| pili assembly protein PilQ [Ralstonia eutropha H16]
Length = 706
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 24/289 (8%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDI 209
+ + R L+ + S ++V N + QV ++ I E
Sbjct: 414 ASARMLSRRGSLTADARTNQLFVSDIASKLEEVQNFIGKIDIPVRQVIIEARIVEATDSF 473
Query: 210 LKQIGFQHSITG-------------------SSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+ +G + G S +GP S A S+
Sbjct: 474 SRNLGVKLGFAGQYNNARVGNTYNNVLPGATSDNGPFLSLPAGAINGTNPANIAVSLFNS 533
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
L ALE + ++ P + + A G + Y+ +SS GATSV
Sbjct: 534 AATKFLALELSALEADGKGKIISSPRVVTANNIKALIEQGTELPYQAATSS-GATSVQFR 592
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
+ L TP + G + L +V++ +G+ + + T V + +GGT+V+
Sbjct: 593 KANLKLEVTPQITPEGNVLLD--VDVNKDSVGIQTTSGFAIDTKHVQTQVLVENGGTVVI 650
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G+ + +PLL IP+LG LF+N+ R TE+ + TP ++
Sbjct: 651 GGIYTQTESNETDKVPLLGDIPVLGYLFKNNAKVRNRTELLVFLTPRIL 699
>gi|332345342|gb|AEE58676.1| transport protein PilQ [Escherichia coli UMNK88]
Length = 386
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ + + +I ++ + + +
Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|238927984|ref|ZP_04659744.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas
flueggei ATCC 43531]
gi|238883944|gb|EEQ47582.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas
flueggei ATCC 43531]
Length = 428
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 130/335 (38%), Gaps = 18/335 (5%)
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+ + + + L V + + G + +
Sbjct: 96 VHDAQRRVHTYTVRYADPEELAHAANLSLTGEGKRAIVSKPNKDIGESGDQSSDVQRRVL 155
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
V+ + L G A + + V L QV+L+ + V + K++G S +
Sbjct: 156 VDTATNTLLFYGTESEAFAVREIVSALD--TAPRQVSLEARVVAVSKRAAKELGVDWSWS 213
Query: 221 G---------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERAT 267
S+G + G S G + F + + AL
Sbjct: 214 SLPQYPNVTRDSAGNWHVSGRNAGTAGRSAPGVIRFGRGPEGLPYEFYYSAAIRALITEG 273
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325
+ LA P +T + G+ A G + V++S T+ + + G++L +TP V +
Sbjct: 274 KAKMLARPNVTTVQGREALINIGAEVPVPVVTTSNNVTTTGIEYREAGIILRYTPRVTAD 333
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
G I + TEVS PV V+ ++ R ADTTV L +G T+V+ GL+ D + I
Sbjct: 334 GNIVAHVHTEVSTPVF-VDDLKAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRTLAKI 392
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
P L +P+LGA FR R ++ E+E+ I T ++
Sbjct: 393 PFLGDLPLLGAFFRTVRTSKNESELMIFLTAHVLD 427
>gi|109896995|ref|YP_660250.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c]
gi|109699276|gb|ABG39196.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c]
Length = 580
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 67/350 (19%), Positives = 132/350 (37%), Gaps = 25/350 (7%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ G +I + + + +A L + + + + + V+ +L
Sbjct: 227 RLEGNILLIAPSEELASRETQQLQNRQQVAQLAPLISANLQINYAKAKEVAG--ILKNTD 284
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+I + +V + E + R+ + + + QV ++ + VR + +
Sbjct: 285 SSILSPRGSVAVDERTNTVLLRDTQTSIDEARKLIRALDIPVKQVLIESRMVTVRDNAGE 344
Query: 212 QIGFQHSITGSSSGPSKS--------------------FAADFGGKFVSEGGDFSVKGVL 251
Q+G + + +S + S + + V ++
Sbjct: 345 QLGVRWGFSNNSGDTATSGSIEGADTLSSGVVPSIDNRLNVNLPVTNPAGSIGIQVARLV 404
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
D + L ALE +A P +T + + A G + Y +SS GATSV
Sbjct: 405 DGTILDLELSALESENKGEVIASPRITVANQREAYIEQGTEIPYVQSTSS-GATSVEFKK 463
Query: 312 YGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ L TP + RI L + + + + G + ++ T V + +G TIV
Sbjct: 464 AVLSLKVTPHITPDHRIILDLVVTQDTRGDTVNTSTGLAVAIDTQEISTQVLVNNGETIV 523
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G+ + +PLL IP+LG LF+N++ E+ E+ I TP ++
Sbjct: 524 LGGIFQQTTTDDVSQVPLLGDIPVLGHLFKNTQTVNEKRELLIFVTPKIL 573
>gi|311695246|gb|ADP98119.1| type II and III secretion system protein [marine bacterium HP15]
Length = 663
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 86/461 (18%), Positives = 159/461 (34%), Gaps = 59/461 (12%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVL 70
+ L L + ANA +I+ I + ++I L+ +V V +Q+
Sbjct: 156 LVPILRPLVAKYGHLAGVAAANALIISDHSSNIQRIEQIVRELDSPSKYEVEVIQLQEAW 215
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDILIERDIAHLEM 125
V D + +P + G+ G +V + +L D + L
Sbjct: 216 VGD-MVTLLQELAPDEL---GRAGGDNAARKYSVTADERSNRLILRGDETFREKMRGLIR 271
Query: 126 TLRRFIADSNIR-------VEMVSDTVVLHGMV---------------RTIQDSQRAVEL 163
L + A + + T +L G++ Q S
Sbjct: 272 QLDQPSATGGTTKVLRLKHADAKNLTEILKGVMGELVKEGTGSGSGGAAKPQSSFAVFAD 331
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+++++ L++ QV ++ I E+ ++ + +G Q ++ S
Sbjct: 332 EGLNALVVRGEPSLMQEAEQIVAALDVR-RAQVMIEAAIVEISDELGQDLGVQVAVGDES 390
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVL-------------------DRFSFETVLHALE 264
+ +FG S G S + S+ +L AL
Sbjct: 391 GESTPVAGTNFGNVGRSLGEVLSAILTGSAITPATGGITIGAGQRNENGVSWGVLLQALS 450
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLH 317
+ A L+ P++ + Q + G ++T S+ T++ D G+ L
Sbjct: 451 TSAAANLLSTPSIITLDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERRDIGLTLK 510
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
TPT+ + G + L ++ + R+ TTV G TIVL GL +DD
Sbjct: 511 VTPTISADGLVRLVVEQTTESVADSIENASDIVTNKREIKTTVLADDGETIVLGGLTRDD 570
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
Q K +PLL IP +G LF + R + + + P +
Sbjct: 571 YQVNKSKVPLLGDIPFVGRLFSSESERRVKRNLLVFLRPKI 611
>gi|300815414|ref|ZP_07095639.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1]
gi|300919331|ref|ZP_07135842.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1]
gi|300926924|ref|ZP_07142688.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1]
gi|300946869|ref|ZP_07161109.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1]
gi|300956717|ref|ZP_07168988.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1]
gi|301329693|ref|ZP_07222442.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1]
gi|301645828|ref|ZP_07245743.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1]
gi|309794656|ref|ZP_07689078.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7]
gi|110616771|gb|ABF05438.1| putative transport portein [Shigella flexneri 5 str. 8401]
gi|300316473|gb|EFJ66257.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1]
gi|300413587|gb|EFJ96897.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1]
gi|300417082|gb|EFK00393.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1]
gi|300453478|gb|EFK17098.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1]
gi|300532306|gb|EFK53368.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1]
gi|300844205|gb|EFK71965.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1]
gi|301075906|gb|EFK90712.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1]
gi|308121706|gb|EFO58968.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7]
gi|315619010|gb|EFU99593.1| transport protein hofQ [Escherichia coli 3431]
gi|320181878|gb|EFW56784.1| Type IV pilus biogenesis protein PilQ [Shigella boydii ATCC 9905]
gi|323182850|gb|EFZ68251.1| transport protein hofQ [Escherichia coli 1357]
gi|332085536|gb|EGI90702.1| transport protein hofQ [Shigella boydii 5216-82]
Length = 386
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ + + +I ++ + + +
Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|119470430|ref|ZP_01613158.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
[Alteromonadales bacterium TW-7]
gi|119446355|gb|EAW27631.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
[Alteromonadales bacterium TW-7]
Length = 697
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 122/326 (37%), Gaps = 49/326 (15%)
Query: 116 IERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
E L+ + I ++ V+ ++T+++ V++I++ +R
Sbjct: 395 AEDFADLLKTDINSIITPRGSVSVDQRTNTLLVKDTVKSIENIRRM-------------- 440
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----- 229
+ L+I QV ++ + VR ++ + +G + + S
Sbjct: 441 ----------IETLDIP-VQQVVIESRMVTVRDNVTEDLGVRWGFSDQQGSDGISGSLEG 489
Query: 230 ---------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ + + + + + L ALE +A
Sbjct: 490 AETISNGVIPDLTDRLNVNLPITNPAASIGLHIAKLANGTLIDLELSALEEENKGEIIAS 549
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P + A + Q A G + Y +SS GAT+V+ + L TP + ++ L +
Sbjct: 550 PRIIAANQQKARIEQGTEIPYTESASS-GATTVSFKKAVLSLEVTPHITPDNKVILDLII 608
Query: 335 EVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
V+ G+ S ++ T V + +G TIVL G+ + I +P+L IP
Sbjct: 609 TQDTRGDVVQTGTGEAVSIDTQEIQTQVLVENGQTIVLGGIFQQQIINTTNKVPVLGDIP 668
Query: 393 ILGALFRNSRFNREETEIFIAATPFL 418
+G LF+++ E+ E+ I TP +
Sbjct: 669 YVGRLFKSTSEFNEKRELLIFVTPKI 694
>gi|301023148|ref|ZP_07186952.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1]
gi|299880971|gb|EFI89182.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1]
Length = 389
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ + + +I ++ + + +
Sbjct: 69 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 128
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 129 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 187
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 188 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 367
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386
>gi|289648291|ref|ZP_06479634.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 701
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 63/352 (17%), Positives = 133/352 (37%), Gaps = 30/352 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGG---------------------KFVSEGGDFS 246
D KQ+G + + ++SG K
Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIG 520
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + L A+E+ +++P + ++A G + Y+ SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V+ + + L TP + RI + ++ EP +P + + + V + G
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGE 639
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691
>gi|259907443|ref|YP_002647799.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96]
gi|224963065|emb|CAX54548.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96]
gi|283477275|emb|CAY73191.1| Type II secretion system protein outD [Erwinia pyrifoliae DSM
12163]
Length = 645
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 63/392 (16%), Positives = 132/392 (33%), Gaps = 24/392 (6%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
+ ++ AD + + G + + ++
Sbjct: 205 ASAPQVAEILNFINGDSKKTGSNKPFAK------AVADTRT---NAVLITGDELARQQLV 255
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
D + +L+ + + V + ++
Sbjct: 256 --DAARNLDEEKDRSSNSRVFYLKHAKAENLLEVLSGVSSTMQDKSESKTASPVAMTKDI 313
Query: 161 VELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V ++T + N + ++++ L+I+ QV ++ I EV+ +G Q
Sbjct: 314 VVKADTHTNSLIINAPPDVMGDLEEIITQLDIS-RAQVQVEAIIVEVQDADGLALGVQWF 372
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERATAIRTLA 273
+ A S + ++ + +AL+ + LA
Sbjct: 373 NKNGGGTQFPAADAPVSNLIGSTVAETLSKANGLAAGFYHGNWAGLFNALQTNSQNNILA 432
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIG 329
P++ + A FT G T S +T SV G+ L P + +
Sbjct: 433 TPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVFNSVDRKSVGIKLKVKPQINKGDSVL 492
Query: 330 LRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ I+ EVS + + ++ R TV + SG T+V+ GLL +++ +P+L
Sbjct: 493 MEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVLVESGKTVVVGGLLDTTHNKVESSVPVL 552
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
KIP+LGALFR + + + + + P +++
Sbjct: 553 GKIPLLGALFRYTTDKQSKRNLMLFIRPTIIR 584
>gi|131592|sp|P15644|GSPD_KLEPN RecName: Full=General secretion pathway protein D; AltName:
Full=Pullulanase secretion envelope pulD; Flags:
Precursor
gi|7246031|gb|AAA25126.2| pulD (ttg start codon) [Klebsiella pneumoniae]
Length = 660
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 59/312 (18%), Positives = 118/312 (37%), Gaps = 38/312 (12%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192
VL G+ T+Q ++A + + +++ ++V+ L+I
Sbjct: 285 VLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 344
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------- 242
QV ++ IAEV+ +G Q + + +
Sbjct: 345 P-QVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSS 403
Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ + ++ +L AL +T LA P++ + A+F G +
Sbjct: 404 SLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPV 463
Query: 296 KTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDM 348
T S +T +V G+ L P + + L I+ EVS + ++
Sbjct: 464 LTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLG 523
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
++ R + V + SG T+V+ GLL + + +PLL IP++GALFR++ +
Sbjct: 524 ATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKR 583
Query: 409 EIFIAATPFLVK 420
+ + P +++
Sbjct: 584 NLMLFIRPTVIR 595
>gi|289625073|ref|ZP_06458027.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|330865718|gb|EGH00427.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 701
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 63/352 (17%), Positives = 133/352 (37%), Gaps = 30/352 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGG---------------------KFVSEGGDFS 246
D KQ+G + + ++SG K
Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIG 520
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + L A+E+ +++P + ++A G + Y+ SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V+ + + L TP + RI + ++ EP +P + + + V + G
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGE 639
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691
>gi|301064256|ref|ZP_07204699.1| general secretion pathway protein D [delta proteobacterium NaphS2]
gi|300441701|gb|EFK06023.1| general secretion pathway protein D [delta proteobacterium NaphS2]
Length = 694
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 70/309 (22%), Positives = 118/309 (38%), Gaps = 28/309 (9%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G I R V T + ++V+ L+I V ++ I EV
Sbjct: 355 KGKAPLISKEARIVADQATNSLVIMADPDDYMILEEVIQKLDIP-RMMVFIEALIMEVNV 413
Query: 208 DILKQIGFQH--------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK----- 248
+ +G + + GSS G + + G + +G V
Sbjct: 414 NKDFNLGVEWEGVKTFTYDGKDAAAFAGSSPGNFDTISGVVGKGTLPQGFSMGVITDTIE 473
Query: 249 -GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----G 303
+ + V++A ++ + L+ P L + A G Y+ +T
Sbjct: 474 IAGVKFPNLAAVVNAYQQDRDVHILSTPQLLTTDNEEAEIMVGRNVPYQVRQETTAAELD 533
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVE 361
+S D GV L TP + + L+I EV+ V A D P R A TTV
Sbjct: 534 YSSYEYKDVGVTLKVTPQISLERSVRLKIYQEVTRLVDNNALTASDRPETYKRLAQTTVI 593
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK- 420
+ T+V+ GL+ DD + +P L IP++G LF+ + RE+T +FI TP +++
Sbjct: 594 VKDANTVVIGGLIGDDTTHTEYKVPCLGDIPLVGWLFKGTSKKREKTNLFIFLTPRIIQN 653
Query: 421 PVAMRDLSR 429
P + +
Sbjct: 654 PAEAKKIYL 662
>gi|239998226|ref|ZP_04718150.1| PilQ [Neisseria gonorrhoeae 35/02]
gi|240112199|ref|ZP_04726689.1| PilQ [Neisseria gonorrhoeae MS11]
gi|268594082|ref|ZP_06128249.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae 35/02]
gi|268598258|ref|ZP_06132425.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae MS11]
gi|268547471|gb|EEZ42889.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae 35/02]
gi|268582389|gb|EEZ47065.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae MS11]
gi|317163512|gb|ADV07053.1| PilQ [Neisseria gonorrhoeae TCDC-NG08107]
Length = 731
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 101/259 (38%), Gaps = 22/259 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 524
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ S+ + + L A E + +TLA P + + +
Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI- 341
A SG + + ++S G +T+ + L TP + G+I + ++ P
Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ +++ +PLL IP++G LF+
Sbjct: 645 ASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704
Query: 402 RFNREETEIFIAATPFLVK 420
+ E+ I TP ++
Sbjct: 705 GKKTDRRELLIFITPRIID 723
>gi|167036119|ref|YP_001671350.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1]
gi|166862607|gb|ABZ01015.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1]
Length = 420
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 66/426 (15%), Positives = 150/426 (35%), Gaps = 24/426 (5%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M+ + + +S S P + + +++ + +
Sbjct: 1 MKTWMKYLLATLLSVPLASATSYEGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQG 60
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
V + +QD V D+V+ S L + G ++ D +
Sbjct: 61 NVTMRLQD--VPWDQALDLVLRSKG---LARRQEGNVLLVAPAADFAAQSAGTRAGQVLE 115
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTV--------VLHGMVRTIQDSQRAVELSETFLSQSG 172
A L+ R + + + +++ + +L G + + + V
Sbjct: 116 AQLQPLRRELLPIHHAKAADLAELLQSSLVGDGILTGSLSVDERTNTLV---------VH 166
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ ++++ L++ QV ++ I E D K +G + +
Sbjct: 167 MPADRLAELRQLVTQLDVPVR-QVAIEARIVEANVDYEKSLGVRWGGPLYGAQLRPGKEL 225
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
GG + + + L A+E++ +++P + ++A G +
Sbjct: 226 FVDLGVERAGGSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTE 285
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
Y+ S S GATSV+ + + L TP + ++ + ++ EP ++P R
Sbjct: 286 VPYQETSQS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIR 344
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
+ + V + G TIV+ G+ + + +P +P +G LFR +++E+ +
Sbjct: 345 KNEVNAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLV 404
Query: 413 AATPFL 418
TP +
Sbjct: 405 FLTPRI 410
>gi|170766950|ref|ZP_02901403.1| protein transporter HofQ [Escherichia albertii TW07627]
gi|170124388|gb|EDS93319.1| protein transporter HofQ [Escherichia albertii TW07627]
Length = 386
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
D + ++ + + NI ++ + + +
Sbjct: 66 HSIAWQNDNIARQEAEWARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A ++ ++ +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKAALTALEQWAAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHV 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
S G + G ++ + L ALE+ + +A P L A
Sbjct: 185 GSVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|240013410|ref|ZP_04720323.1| PilQ [Neisseria gonorrhoeae DGI18]
gi|240015851|ref|ZP_04722391.1| PilQ [Neisseria gonorrhoeae FA6140]
gi|240120480|ref|ZP_04733442.1| PilQ [Neisseria gonorrhoeae PID24-1]
Length = 731
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 101/259 (38%), Gaps = 22/259 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 524
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ S+ + + L A E + +TLA P + + +
Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI- 341
A SG + + ++S G +T+ + L TP + G+I + ++ P
Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ +++ +PLL IP++G LF+
Sbjct: 645 ASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704
Query: 402 RFNREETEIFIAATPFLVK 420
+ E+ I TP ++
Sbjct: 705 GKKTDRRELLIFITPRIID 723
>gi|238756264|ref|ZP_04617580.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
gi|238705519|gb|EEP97920.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
Length = 660
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 53/269 (19%), Positives = 96/269 (35%), Gaps = 13/269 (4%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
++T ++V+ L+I QV ++ I EV+ + +G Q
Sbjct: 333 AQTNSLIINAAPDLLRDLEQVITQLDIR-RAQVLVEAIIVEVQDNDDLNLGVQWFNRHGG 391
Query: 224 SGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
A S G + R ++ + AL + LA P++
Sbjct: 392 GSNFPDTGASASSISANNIGSSLNGVAGLATGFYRGNWSGLFTALRTNSQNDILATPSIV 451
Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+ A F+ G + T S +T +V G+ L P + + L I+
Sbjct: 452 TLDNMEAEFSVGQEVPILTGSQTTTGDNIFRTVDRKSVGIKLKVKPQINKGDSVLLEIEQ 511
Query: 335 EVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
EVS G ++ R V + S +V+ GLL + +PLL I
Sbjct: 512 EVSSVAEKTPGGTGDLGATFNTRTVKNAVMVGSNNIVVVGGLLDSTSHDITSKVPLLGDI 571
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
P +G LFR++ + + + P +++
Sbjct: 572 PGIGFLFRSTSQKMVKRNLMLFIRPTIIR 600
>gi|320175756|gb|EFW50842.1| Type IV pilus biogenesis protein PilQ [Shigella dysenteriae CDC
74-1112]
Length = 386
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ + + +I ++ + + +
Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLKNRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEYERRELVVFITPRLV 383
>gi|298530088|ref|ZP_07017490.1| type II and III secretion system protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509462|gb|EFI33366.1| type II and III secretion system protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 504
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 78/491 (15%), Positives = 164/491 (33%), Gaps = 78/491 (15%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVIN----ISDVEIGKGKKIS-------- 51
RT+ + LF ++A ++ + +++ G ++
Sbjct: 22 SSRTYSVCTLLILFILAAAIAGCTGTRDQEEPFMTQWWDLAEESRGHTHEVEERESLDIE 81
Query: 52 ----------------IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
+ ++V + V +L + AD + + + G
Sbjct: 82 PSHIDLEDIEPEPAHELPRDRVTLNMQQAPVATILRALSRIAD------QNIIVSETVEG 135
Query: 96 QANVIL----IGHDGKQM---------LNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
AN+ + K + +IL + + L+ L R +I ++
Sbjct: 136 TANLNIRDVPWDQAFKSIIASQGLSYVWEGEILRIKSMQDLQHELDRAGLKEDIGRRKLA 195
Query: 143 DTV-------VLHGMVRTIQDSQRAV--------------ELSETFLSQSGRNQYANSSS 181
+ ++ + Q + + + S Q +
Sbjct: 196 AELTAPLMHRIVKLNYADPEKLQDNLIRFLSRDGDGEPHGSIVVDEETNSLMIQATRNDM 255
Query: 182 KKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAAD 233
++V +N L+ Q+ ++ I E + +++G + S +
Sbjct: 256 ERVHKAINHLD-RPRPQILMEANIVEATQRTARELGVRWSGRYVTPLSFEDEVGFGDLLR 314
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
+ + + L L ALER + L P++T + Q A FT GQ
Sbjct: 315 DEAGYTGDMDLSVISARLPGSVLYAHLQALERDGEVNILTSPSITTMDNQMA-FTEHGQR 373
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
+ G+ +V D + L P+V+ + + I+ E + P R
Sbjct: 374 VPYETVDEDGSRTVEFEDAVLRLEVVPSVMEGNHLKMDIRVNKDEVDFTRDVRGQPVIRT 433
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
+ +T + + G TIV++GL K+ + + G+ L +P LG LF++ +E E I
Sbjct: 434 KHTETNLVVRDGETIVISGLSKETLSDTERGVMGLRDLPGLGWLFKSREQEQEMEEFLIF 493
Query: 414 ATPFLVKPVAM 424
TP +++P
Sbjct: 494 ITPTILEPQRR 504
>gi|307311947|ref|ZP_07591585.1| type IV pilus secretin PilQ [Escherichia coli W]
gi|306908091|gb|EFN38591.1| type IV pilus secretin PilQ [Escherichia coli W]
gi|315062668|gb|ADT76995.1| dsDNA transporter subunit [Escherichia coli W]
Length = 402
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 68/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ + + +I ++ + + +
Sbjct: 82 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 141
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 142 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 200
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 201 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 260
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V
Sbjct: 261 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 320
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 321 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 380
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 381 DGKEDERRELVVFITPRLV 399
>gi|238921473|ref|YP_002934988.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146]
gi|238871042|gb|ACR70753.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146]
Length = 409
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 80/434 (18%), Positives = 151/434 (34%), Gaps = 40/434 (9%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGL-----NKVIILQVPVDVQDV 69
L +P+ +P + A ++ + + +++ L + + V
Sbjct: 1 MLLVMSPTGQAMPLTLWFDRAPLSSVLQAVAEFAGLNLILSEEVRGEATVHIAHTPWPRV 60
Query: 70 LVSDPTKADVVVHSPRTMYLF------GKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
L + D+ V + L + + A + +L D A +
Sbjct: 61 LDALAEIHDLSVVRRDGILLIQSRARAARQIRPAAAPAPPKPPQMRSQRVVLHYADAATV 120
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
E +LR+ D + G + + +E R+
Sbjct: 121 EKSLRQR-----------RDLLGETGSAVADSRTNALLLRAEVARLAPLRDW-------- 161
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
+ L++ QV L I + ++ L+++G + S S + F +
Sbjct: 162 -IAQLDVPLP-QVQLAAHIVSISQEGLRELGIRWSSGDQRSRGQDTLRGAADAYFSAG-- 217
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ + L ALER + +A P L A GQ+AS G + Y G
Sbjct: 218 --FQVARIGGQTLAVALAALERQDKVAIIASPHLMAAHGQTASIKQGSELPYAVSGGERG 275
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVE 361
+++ + + + TP +L+ RI L +Q + P V+ + + ++ T V
Sbjct: 276 VSTMEFKEAVLGMSVTPRILADARIELALQISQNMPGRVVRQGDSEALAIDKQEITTQVT 335
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
L G T +L G+ + Q G P L+ +P+LG L R+ E+ I TP L+
Sbjct: 336 LADGDTAMLGGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSA 395
Query: 422 VA--MRDLSRPDDH 433
+ R L P
Sbjct: 396 SSLLPRTLRPPARG 409
>gi|310777966|ref|YP_003966299.1| type II and III secretion system protein [Ilyobacter polytropus DSM
2926]
gi|309747289|gb|ADO81951.1| type II and III secretion system protein [Ilyobacter polytropus DSM
2926]
Length = 554
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 16/261 (6%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + K +M+ +++ + QV ++ I EV+ + G ++ + S
Sbjct: 230 ASSEEADTLKNIMDKIDVP-DLQVVIEARILEVQEGTGRDWGMSWGYNSNNLTEADSSDG 288
Query: 233 DFGGKFVSEG---------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G ++ G G+L F V + LA+P +T ++G+
Sbjct: 289 SGGYLSGTDSYYDASSLSDGITLGLGLLGSDQFSAVYRNVVEDNTTEILAKPVITTLNGK 348
Query: 284 SASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
A+ + Y + S +TS D G+ L TP + G I + + E+SE
Sbjct: 349 KATIELTEEVPYKELEYVSDSGDATSTSYEFKDVGITLEVTPVITDDGMIKIEVTPEISE 408
Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G +P RK +T V + +G T+ + GL+KD P LSKIPILG LF
Sbjct: 409 VT-GYTDDGVPYVSSRKVETNVIVRNGQTLAIGGLIKDTKSTTDTKDPYLSKIPILGYLF 467
Query: 399 RNSRFNREETEIFIAATPFLV 419
++S + +T + I TP ++
Sbjct: 468 KSSSNEKSKTNLMIFITPKII 488
>gi|297570196|ref|YP_003691540.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus
AHT2]
gi|296926111|gb|ADH86921.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus
AHT2]
Length = 690
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 73/291 (25%), Positives = 115/291 (39%), Gaps = 31/291 (10%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH- 217
+ T + + V+ L+I Q+ ++ IAE+ +G Q
Sbjct: 324 DIQADANTNALIMTGPPAVLQNLQTVIRQLDIR-RAQLMIEAVIAEISTARAVDLGIQWF 382
Query: 218 -----------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR---------FSFE 257
+ GS + S A D G G GV FSF
Sbjct: 383 SADADKVIGGTNFPGSGASMSGIAAGDEGSIAALAGLGGFNMGVFSGSTEILGREFFSFG 442
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTT 309
+++AL R L+ P+L + Q A G + T S + GAT +V
Sbjct: 443 ALVNALARDGDTNILSTPSLVTMDNQEAEIIVGQNVPFLTGSFTEGATGVGGSPFQTVER 502
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
D G+ L P V I L+I+ EVS A + R +T+V + G +V
Sbjct: 503 RDVGIKLRVKPQVTEGDVIRLQIEQEVSSVERDDLAAGL-VTNTRNINTSVLVEDGKVLV 561
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L GL+ DD+Q+ +PLL IP+ GALFR++R R + + + P +++
Sbjct: 562 LGGLISDDVQETVSKVPLLGDIPLFGALFRHTRSERSKRNLMVFLRPVILR 612
>gi|59800555|ref|YP_207267.1| hypothetical protein NGO0094 [Neisseria gonorrhoeae FA 1090]
gi|240117229|ref|ZP_04731291.1| hypothetical protein NgonPID_02009 [Neisseria gonorrhoeae PID1]
gi|268602920|ref|ZP_06137087.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae PID1]
gi|293397705|ref|ZP_06641911.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae F62]
gi|62900657|sp|Q5FAD2|PILQ_NEIG1 RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
AltName: Full=Outer membrane protein omc; Flags:
Precursor
gi|59717450|gb|AAW88855.1| pilus secretion protein [Neisseria gonorrhoeae FA 1090]
gi|268587051|gb|EEZ51727.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae PID1]
gi|291611651|gb|EFF40720.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae F62]
Length = 723
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 102/259 (39%), Gaps = 22/259 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 458 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 516
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ S+ + + L A E + +TLA P + + +
Sbjct: 517 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 576
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + ++S G +T+ + L TP + G+I + ++ P
Sbjct: 577 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 636
Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+
Sbjct: 637 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 696
Query: 402 RFNREETEIFIAATPFLVK 420
+ E+ I TP ++
Sbjct: 697 GKKTDRRELLIFITPRIID 715
>gi|237703055|ref|ZP_04533536.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA]
gi|226902319|gb|EEH88578.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA]
Length = 654
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364
Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249
+G Q + + + + +
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTVIR 599
>gi|194097721|ref|YP_002000762.1| PilQ [Neisseria gonorrhoeae NCCP11945]
gi|240124975|ref|ZP_04737861.1| PilQ [Neisseria gonorrhoeae SK-92-679]
gi|240127489|ref|ZP_04740150.1| PilQ [Neisseria gonorrhoeae SK-93-1035]
gi|254493004|ref|ZP_05106175.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae 1291]
gi|268683559|ref|ZP_06150421.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae SK-92-679]
gi|268685861|ref|ZP_06152723.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae SK-93-1035]
gi|193933011|gb|ACF28835.1| PilQ [Neisseria gonorrhoeae NCCP11945]
gi|226512044|gb|EEH61389.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae 1291]
gi|268623843|gb|EEZ56243.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae SK-92-679]
gi|268626145|gb|EEZ58545.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae SK-93-1035]
Length = 731
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 102/259 (39%), Gaps = 22/259 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 524
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ S+ + + L A E + +TLA P + + +
Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + ++S G +T+ + L TP + G+I + ++ P
Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644
Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+
Sbjct: 645 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704
Query: 402 RFNREETEIFIAATPFLVK 420
+ E+ I TP ++
Sbjct: 705 GKKTDRRELLIFITPRIID 723
>gi|332284397|ref|YP_004416308.1| general secretion pathway protein D [Pusillimonas sp. T7-7]
gi|330428350|gb|AEC19684.1| general secretion pathway protein D [Pusillimonas sp. T7-7]
Length = 792
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 64/272 (23%), Positives = 104/272 (38%), Gaps = 29/272 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADFGGKFV 239
+V++ L+ QV ++ I EV D + G Q G SS S A+F G +
Sbjct: 466 EVIDQLDQR-RAQVLVESLIVEVSTDKAAEFGIQWMAGGNDLSSGNTSFMGGANFNGSGI 524
Query: 240 SEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISG 282
+ G ++ + + + ALE L+ P L +
Sbjct: 525 NPSGITTIDALAQGLSLGVVKGTVDILGTEILNLGVLARALESKGDANVLSTPNLMTLDN 584
Query: 283 QSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ AS G + T + +VT D G+ L P + G + + I E
Sbjct: 585 EEASIIVGRTVPFVTGQYTTSADGASNPFQTVTREDVGLTLRIRPQISEGGTVKMAIYQE 644
Query: 336 VSEPVIGVNAGDMPSYR-VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
VS ++ R +T V + G IVL GLL+D I +P+L IP+L
Sbjct: 645 VSSIDGAASSAGAGLITRKRALETNVLVDDGQIIVLGGLLEDTISDSTSAVPVLGDIPVL 704
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
G LFR + +R +T + + P +V+
Sbjct: 705 GNLFRYDKRSRTKTNLMVFLRPHIVRNARDGA 736
>gi|309782882|ref|ZP_07677602.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA]
gi|308918306|gb|EFP63983.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA]
Length = 719
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------------------F 230
QV ++ I E + +G + ++G F
Sbjct: 467 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 526
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
A+ + S+ L ALE + ++ P + A G
Sbjct: 527 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 586
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
+ Y+ +SS GATSV+ + L TP + G I L +V++ +G+ + +
Sbjct: 587 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLD--VDVNKDSVGIQTTNGFA 643
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ TE+
Sbjct: 644 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 703
Query: 411 FIAATPFLV 419
+ TP ++
Sbjct: 704 LVFLTPRVL 712
>gi|123443753|ref|YP_001007724.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|27529236|emb|CAC83029.1| Yts1D protein [Yersinia enterocolitica (type 0:8)]
gi|122090714|emb|CAL13590.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 658
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 57/317 (17%), Positives = 107/317 (33%), Gaps = 18/317 (5%)
Query: 148 HGMVRTIQDSQRAVEL---SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
G + V + ++T ++V+N L+I QV ++ I E
Sbjct: 311 KGQATPAVAMMKNVVIKADAQTNSLIINAAPDLLRDLEQVINQLDIR-RAQVLVEAIIVE 369
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETV 259
V+ +G Q A ++ G + R ++ +
Sbjct: 370 VQDSDALNLGVQWFNRNGGGSNFPENGASASSITSNDMGSSLKGITGLATGFYRGNWSGL 429
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVV 315
AL + LA P++ + A F+ G + + S +T +V G+
Sbjct: 430 FTALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPVLSGSQTTTGDNIFRTVDRKSVGIK 489
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
L P + + L I+ EVS G ++ R V + S +V+ G
Sbjct: 490 LKVKPQINKGDSVLLEIEQEVSSVAEKAPGGTGDLGATFNTRMVKNAVMVGSNNIVVVGG 549
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRP 430
LL + +PLL IP +G LFR++ + + + P +++ +
Sbjct: 550 LLDSTSHDVTSKVPLLGDIPGIGFLFRSTSQKMVKRNLMLFIRPTIIREQGDYVDASKKK 609
Query: 431 DDHYSVEDDAKAFFFNR 447
D + E D +
Sbjct: 610 LDKFQQEQDIDRTTNGQ 626
>gi|310765060|gb|ADP10010.1| General secretion pathway protein D [Erwinia sp. Ejp617]
Length = 645
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 63/392 (16%), Positives = 132/392 (33%), Gaps = 24/392 (6%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
+ ++ AD + + G + + ++
Sbjct: 205 ASAPQVAEILNFINGDSKKTGSNKPFAK------AVADTRT---NAVLITGDELARQQLV 255
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
D + +L+ + + V + ++
Sbjct: 256 --DAARNLDEEKDRSSNSRVFYLKHAKAENLLEVLSGVSSTMQDKSESKTASPVAMTKDI 313
Query: 161 VELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V ++T + N + ++++ L+I+ QV ++ I EV+ +G Q
Sbjct: 314 VVKADTHTNSLIINAPPDVMGDLEEIITQLDIS-RAQVQVEAIIVEVQDADGLALGVQWF 372
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERATAIRTLA 273
+ A S + ++ + +AL+ + LA
Sbjct: 373 NKNGGGTQFPAADAPVSNLIGSTVAETLSKANGLAAGFYHGNWAGLFNALQTNSQNNILA 432
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIG 329
P++ + A FT G T S +T SV G+ L P + +
Sbjct: 433 TPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVFNSVDRKSVGIKLKVKPQINKGDSVL 492
Query: 330 LRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ I+ EVS + + ++ R TV + SG T+V+ GLL +++ +P+L
Sbjct: 493 MEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVLVESGKTVVVGGLLDTTHNKVESSVPVL 552
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
KIP+LGALFR + + + + + P +++
Sbjct: 553 GKIPLLGALFRYTTDKQSKRNLMLFIRPTIIR 584
>gi|241664484|ref|YP_002982844.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D]
gi|240866511|gb|ACS64172.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D]
Length = 721
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------------------F 230
QV ++ I E + +G + ++G F
Sbjct: 469 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 528
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
A+ + S+ L ALE + ++ P + A G
Sbjct: 529 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 588
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
+ Y+ +SS GATSV+ + L TP + G I L +V++ +G+ + +
Sbjct: 589 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLD--VDVNKDSVGIQTTNGFA 645
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ TE+
Sbjct: 646 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 705
Query: 411 FIAATPFLV 419
+ TP ++
Sbjct: 706 LVFLTPRVL 714
>gi|240114943|ref|ZP_04729005.1| PilQ [Neisseria gonorrhoeae PID18]
gi|240122781|ref|ZP_04735737.1| PilQ [Neisseria gonorrhoeae PID332]
gi|260441241|ref|ZP_05795057.1| PilQ [Neisseria gonorrhoeae DGI2]
gi|268600608|ref|ZP_06134775.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae PID18]
gi|268681392|ref|ZP_06148254.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae PID332]
gi|291044580|ref|ZP_06570289.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2]
gi|268584739|gb|EEZ49415.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae PID18]
gi|268621676|gb|EEZ54076.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae PID332]
gi|291011474|gb|EFE03470.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2]
Length = 731
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 102/259 (39%), Gaps = 22/259 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 524
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ S+ + + L A E + +TLA P + + +
Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + ++S G +T+ + L TP + G+I + ++ P
Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644
Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+
Sbjct: 645 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704
Query: 402 RFNREETEIFIAATPFLVK 420
+ E+ I TP ++
Sbjct: 705 GKKTDRRELLIFITPRIID 723
>gi|312972346|ref|ZP_07786520.1| transport protein hofQ [Escherichia coli 1827-70]
gi|310334723|gb|EFQ00928.1| transport protein hofQ [Escherichia coli 1827-70]
Length = 386
Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats.
Identities = 68/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ + + +I ++ + + +
Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGNDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP+ G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|187930316|ref|YP_001900803.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J]
gi|187727206|gb|ACD28371.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J]
Length = 721
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------------------F 230
QV ++ I E + +G + ++G F
Sbjct: 469 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 528
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
A+ + S+ L ALE + ++ P + A G
Sbjct: 529 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 588
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
+ Y+ +SS GATSV+ + L TP + G I L +V++ +G+ + +
Sbjct: 589 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLD--VDVNKDSVGIQTTNGFA 645
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ TE+
Sbjct: 646 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 705
Query: 411 FIAATPFLV 419
+ TP ++
Sbjct: 706 LVFLTPRVL 714
>gi|77919728|ref|YP_357543.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM
2380]
gi|77545811|gb|ABA89373.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM
2380]
Length = 874
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 18/243 (7%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFGGKFVSEG--- 242
QV ++ I E + +G I+ + S G VS G
Sbjct: 634 RQVLIEARIVEASATFSRDLGVNWGISYQHNPGSDVEGNDASIGMGGTLVGIPVSPGEVS 693
Query: 243 ----GDFSVKGVL-DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ V D+ + L ALE++ R ++ P ++ ++G+ A G + Y +
Sbjct: 694 SGIVSGLTFGQVGVDKTVLDLRLAALEQSGHGRIVSTPRVSTLNGEEAEVAQGTEIPYLS 753
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
V S T + L TP + G + L I+ + + P+ ++A
Sbjct: 754 V--SDDGTKTEFKKAELSLKVTPEINPDGSVILEIEAKNDSRGANTGLSEAPAIDTKRAT 811
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T V + G T V+ G+ D + G+P L +PILG LF++ + E E+ + TP
Sbjct: 812 TKVLVKDGETTVIGGIFIQDKSESDSGVPWLMNVPILGHLFKSKSVSEERRELLVFITPR 871
Query: 418 LVK 420
++
Sbjct: 872 ILD 874
>gi|300903573|ref|ZP_07121495.1| general secretion pathway protein D [Escherichia coli MS 84-1]
gi|301305534|ref|ZP_07211626.1| general secretion pathway protein D [Escherichia coli MS 124-1]
gi|300404446|gb|EFJ87984.1| general secretion pathway protein D [Escherichia coli MS 84-1]
gi|300839229|gb|EFK66989.1| general secretion pathway protein D [Escherichia coli MS 124-1]
gi|315255908|gb|EFU35876.1| general secretion pathway protein D [Escherichia coli MS 85-1]
Length = 650
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-HAQVLVEAIIVEVQDG 360
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
+G Q + + + G S +
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595
>gi|309785870|ref|ZP_07680501.1| transport protein hofQ [Shigella dysenteriae 1617]
gi|308926990|gb|EFP72466.1| transport protein hofQ [Shigella dysenteriae 1617]
Length = 267
Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 6/252 (2%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 14 DNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVT 72
Query: 233 DFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G V G ++ + L ALE+ + +A P L A Q AS
Sbjct: 73 TLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 132
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGD 347
G + Y+ S +GATSV + + + TPTVL GRI L++ V V+ G+
Sbjct: 133 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 192
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E
Sbjct: 193 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 252
Query: 408 TEIFIAATPFLV 419
E+ + TP LV
Sbjct: 253 RELVVFITPRLV 264
>gi|325498932|gb|EGC96791.1| outer membrane porin HofQ [Escherichia fergusonii ECD227]
Length = 385
Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats.
Identities = 66/252 (26%), Positives = 112/252 (44%), Gaps = 6/252 (2%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
N+ A ++ + ++ +++ QV L I + L+++G + + +
Sbjct: 132 DNKTALAALEHWISEMDVP-VGQVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVT 190
Query: 233 DFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
V G ++ + L ALE+ + +A P L A Q AS
Sbjct: 191 TLSSDLAVATATTQVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 250
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGD 347
G + Y+ S +GATSV + + + TPTVL GRI L++ V V+ + G+
Sbjct: 251 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGE 310
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ + ++ +T VE+ SG T+ L G+ + K+ IPLL IP LG LF + E
Sbjct: 311 VLTIDKQEIETQVEVKSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENER 370
Query: 408 TEIFIAATPFLV 419
E+ + TP LV
Sbjct: 371 RELVVFITPRLV 382
>gi|315125412|ref|YP_004067415.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
[Pseudoalteromonas sp. SM9913]
gi|315013925|gb|ADT67263.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
[Pseudoalteromonas sp. SM9913]
Length = 696
Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats.
Identities = 59/307 (19%), Positives = 118/307 (38%), Gaps = 33/307 (10%)
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
+++ + + G V Q + + + S ++++ L+I +
Sbjct: 398 ADLLKTDTNSIITARGSVSVDQRTNTLLM---------KDTAKSIESVRRMVETLDIPVK 448
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI--------------------TGSSSGPSKSFAAD 233
QV ++ + VR ++ + +G + G+ S +
Sbjct: 449 -QVVIEARMVTVRDNVTEDLGVRWGFSDQQGSDGVSGTLEGAETISNGNIPSLSDRLNVN 507
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
S + + + + L ALE +A P +TA + Q A G +
Sbjct: 508 LPVANPSASIGMHIAKLANGTLIDLELTALEEENKGEIIASPRITAANQQKARIEQGTEI 567
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SY 351
Y +SS GAT+V+ + L TP + ++ L + V G P +
Sbjct: 568 PYVESASS-GATTVSFKKAVLSLEVTPHITPDNKVILNLIITQDTRGDTVQTGTGPAVAI 626
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
++ +T V + +G T+VL G+ + I + +PLL +P +G LF+++ E+ E+
Sbjct: 627 DTQQIETQVLVENGQTVVLGGIFQQQIINSTKKVPLLGDLPYVGRLFKSTSEFNEKRELL 686
Query: 412 IAATPFL 418
I TP +
Sbjct: 687 IFVTPKI 693
>gi|90023220|ref|YP_529047.1| helix-turn-helix, AraC type [Saccharophagus degradans 2-40]
gi|89952820|gb|ABD82835.1| type II and III secretion system protein [Saccharophagus degradans
2-40]
Length = 666
Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats.
Identities = 83/459 (18%), Positives = 159/459 (34%), Gaps = 60/459 (13%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L P + L E+N V++ + I + + + ++ + V ++
Sbjct: 151 VLRPLVPQHSHLSSYTESNVIVVSDTAPNIARLRDVIERIDTAALPTTEVVPLKYADAED 210
Query: 75 TKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDILIERDIAHLEMTL-R 128
A + G+ ++ + +L+ + + + L L R
Sbjct: 211 LVATLTKLDR------GEKQSSTPVNQLQIVADKRNNSVLLSGEDIQRKRAKDLIRKLDR 264
Query: 129 RFIADSNIRVEMVS------DTVVLHGMVRTIQDSQ------RAVELSETFLSQSGRNQY 176
+ N+RV ++ L +V+ +Q Q + + +
Sbjct: 265 PPVQMGNVRVVYLNYANAKDVAATLSKVVQNMQQMQPGGKDKGGKDGATVEADEDTNALL 324
Query: 177 ANSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S + +LL I QV ++ I ++ D K++G Q + ++G +
Sbjct: 325 LTGSGDMLNSLLTIVERLDIKRAQVLVEAIIVDINVDANKELGVQWMFSNENNGTFGGSS 384
Query: 232 ADFG----------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
G G + G V G +F +L AL+ ++
Sbjct: 385 QGDGSLGSLATGTLGGGTDALTNLASGIAGNTGQLLGVAGNNGGENFIALLSALQTSSDA 444
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS---------STGATSVTTHDYGVVLHFTP 320
L+ P+L + Q AS + G ++T S T++ D G+ L TP
Sbjct: 445 NILSTPSLVTMDNQEASISVGQSVPFRTGSYSTTGTTGSVGNPFTTIQREDVGITLTVTP 504
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
V +I L I EVS V K +T + G ++L GL+++D+Q
Sbjct: 505 HVNEGNKILLDISQEVSSISSSVAGSADLITNQSKIETQLLANDGQIVILGGLIQEDVQD 564
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+PLL IP+LG LF+ + + + +V
Sbjct: 565 GDTRVPLLGSIPLLGHLFKYQSTKFLKKNLMVFIRVKIV 603
>gi|256823455|ref|YP_003147418.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069]
gi|256796994|gb|ACV27650.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069]
Length = 701
Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats.
Identities = 57/282 (20%), Positives = 108/282 (38%), Gaps = 21/282 (7%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V T Q + + ++++ L+I QV ++ I
Sbjct: 425 RGSVTTDQRTNTIL---------VQDVSTKIEDVRRLVAQLDIPVR-QVLIEARIVTADD 474
Query: 208 DILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ +G + ++ + + F + + S + D + L ALE
Sbjct: 475 GFARDLGSRFGVSDVMNSGEVNGDFNVNLPIANPAGSLGLSFARLQDGIVVDMELSALES 534
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+A P + + + A +G + Y +SS GA +V + + L TP +
Sbjct: 535 ENRGEVVASPKVITANQKEAFIKAGEEIPYLQGASS-GAANVQFKEAVLELKVTPQITPD 593
Query: 326 GRIGLRIQTEVSE--------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
GR+ L + G + P+ ++ T V + +G TIVL G+ +
Sbjct: 594 GRVILDLAITQDTRGENVIFTSPDGGGSSGAPAINTQEIGTQVLVDNGETIVLGGIFQHR 653
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +PLL IP+LG LF+N++ + E+ I TP ++
Sbjct: 654 TTYDESKVPLLGDIPLLGWLFKNTQREDTKQELLIFVTPKII 695
>gi|170018373|ref|YP_001723327.1| outer membrane porin HofQ [Escherichia coli ATCC 8739]
gi|169753301|gb|ACA76000.1| type IV pilus secretin PilQ [Escherichia coli ATCC 8739]
Length = 386
Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats.
Identities = 68/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ + + +I ++ + + +
Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP+ G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383
>gi|307260659|ref|ZP_07542351.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306869736|gb|EFN01521.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 432
Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats.
Identities = 49/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%)
Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + S K ++ L+ +Q+ ++ I + + L+++G + I ++G K +
Sbjct: 155 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 214
Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + ++ + L ALE+ + +A P L
Sbjct: 215 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 274
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
+ + AS G + Y + ++ + + L TP + + +I L + + P
Sbjct: 275 NKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKKILLDLVVTQNSPN 334
Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ + + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF
Sbjct: 335 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 394
Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
+S + E+ I TP++VK +
Sbjct: 395 HSSDKISKRELVIFVTPYIVKNGQPQ 420
>gi|289676481|ref|ZP_06497371.1| type II and III secretion system protein:NolW-like:NolW-like
[Pseudomonas syringae pv. syringae FF5]
Length = 701
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 51/257 (19%), Positives = 108/257 (42%), Gaps = 23/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------SK 228
++++ L+I QV ++ I E D KQ+G + + ++SG +
Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAG 495
Query: 229 SFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ + + + V + + L A+E+ +++P +
Sbjct: 496 NTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP
Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR
Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674
Query: 402 RFNREETEIFIAATPFL 418
+ ++E+ + TP +
Sbjct: 675 VVSESKSELLVFLTPRI 691
>gi|309703802|emb|CBJ03143.1| protein transport protein [Escherichia coli ETEC H10407]
Length = 412
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 80/425 (18%), Positives = 155/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + + + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + +I ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ + L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L++ V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP+ G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFN 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|322418906|ref|YP_004198129.1| type IV pilus secretin PilQ [Geobacter sp. M18]
gi|320125293|gb|ADW12853.1| type IV pilus secretin PilQ [Geobacter sp. M18]
Length = 922
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 66/451 (14%), Positives = 157/451 (34%), Gaps = 56/451 (12%)
Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK-----ISIGLNKVIILQV-PVDV 66
+ L + + + P + + AA + + + + + L+ D+
Sbjct: 483 AAKLPPAPVAKPRAPEVADELAAPVRSDEAMTEVSGTDKRVPKKVYKGRRVTLEFSDADI 542
Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
+ + A+V + + G ++ L+ Q L++ + + +
Sbjct: 543 RKIF---QLIAEVSNLN---FLISDDVTGTISIKLVNVPWDQALDVILDAKGLAMVQQGN 596
Query: 127 LRRFIA--------DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF--LSQSGRNQY 176
+ + D + + ++ ++ + E++ F L
Sbjct: 597 IVQIKPRSKMQNQADEELAAKKAAERLMEMKTAVFEVNYASVGEVATQFNMLKSDRGIIT 656
Query: 177 ANSSSKKVMNLLNIAG--------------EDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
+ + +V+ E QV ++ I E + +G Q +++
Sbjct: 657 KDERTSRVIVKDIQTALDDMRALLKTLDAPEKQVMIEARIVEATSTFTRDLGVQWALSYK 716
Query: 223 SSGPSKSFAADFGGKFVSEGGD--------------FSVKGVLDRFSFETVLHALERATA 268
S S + F S + + + A
Sbjct: 717 DSSASIANINSAETTFGGVVSTAGPGTSGSGGLGLGMSFGKLTSNVQLDMRIAAAATIGQ 776
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
++ ++ P + ++ ++A + G Y+T S+ T + + L TP + + G +
Sbjct: 777 VKIISTPKVVTLNNKAAKISQGQSIPYQTTSAEG--TKTEFVEAALTLEVTPHITADGSV 834
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
++I+ + P G P ++A T + + +G T V+ G+ D + G+P L
Sbjct: 835 SMKIKASNNSP----GTGTPPPINKKEATTELVVSNGDTTVIGGIYVDSDTESDTGVPFL 890
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ IP+LG LF+++ + +TE+ I TP +V
Sbjct: 891 ADIPLLGWLFKSNTKQKTKTELLIFITPKIV 921
>gi|212634883|ref|YP_002311408.1| type II and III secretion system protein:NolW-like protein
[Shewanella piezotolerans WP3]
gi|212556367|gb|ACJ28821.1| Type II and III secretion system protein:NolW-like protein
[Shewanella piezotolerans WP3]
Length = 688
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 72/397 (18%), Positives = 139/397 (35%), Gaps = 59/397 (14%)
Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
AD + + + G + L Q L+L + + +E +
Sbjct: 294 IADY---NNFNLVVSDTVEGDITLRLDDVPWDQALDLILQTKGLDKRIEGNILMIAPSEE 350
Query: 136 IRVEMVSD----------------------------TVVLHGMVRTIQDSQRAVELSETF 167
I + + ++L G ++ S+ ++
Sbjct: 351 IAIRESQELKNRQEVKELAPLYSEYLQINYAKAADIAILLKGEDSSLLSSR--GSVAVDE 408
Query: 168 LSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
+ + + + + + L+ + QV ++ + V+ D+ + +G + +T
Sbjct: 409 RTNTLLVKDTEETLESIYRLIEVLDIPIKQVLIEARMVTVKDDVAEDLGVRWGVTDQQGT 468
Query: 226 PSKSFA---------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
S + + FSV + D + L ALE
Sbjct: 469 KGTSGSLEGANDIAAGILPSLNDRLNVNLPAAPVNATSIAFSVAKLADGTVLDLELSALE 528
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ +A P + S Q A++ G + +SS+GAT+VT + L TP +
Sbjct: 529 QENKGEIIASPRIMT-SNQKAAYIEQGVEIPYVEASSSGATTVTFKKAVLSLRVTPQITP 587
Query: 325 PGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
R+ L ++ V+ G+ S ++ T V + G TIVL G+ + +
Sbjct: 588 DNRVILDLEITQDSQGKVVATPTGEAVSIDTQRIGTQVLVDHGETIVLGGIYQQQLISRV 647
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+PLL IP LG +FR++ E E+ I TP +V
Sbjct: 648 SKVPLLGDIPYLGFMFRSTSDKNERQELLIFVTPKIV 684
>gi|54310371|ref|YP_131391.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
SS9]
gi|46914812|emb|CAG21589.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
SS9]
Length = 556
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 77/312 (24%), Positives = 120/312 (38%), Gaps = 35/312 (11%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
++E ++ G R+I S +A + + ++ + S SKK + Q
Sbjct: 229 QLEKAVQAMIGSGEGRSIVVSPQASLISVRAYPNELREVKEFLSVSKK-------RLKRQ 281
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS------KSFAADFGGKFVSEGGDFSVKG 249
V L+ I EV Q G S SS G + +A GG +S
Sbjct: 282 VVLEAKIMEVTLSDGYQQGVNWSNITSSIGGTDIVFGRTGPSALPGGDAISALLGGQTNL 341
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------- 302
+ +FE VL LE + L+ P +TA + Q A GG + T S
Sbjct: 342 TISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSGDNS 401
Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-------- 351
+T G+ L TP + G + L + V E V D+ +
Sbjct: 402 TSAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKEIDLGATFGVYKLPL 461
Query: 352 ---RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
+R++D+ + SG +V+ GL+K I +P L IP LG LFRN + +T
Sbjct: 462 AKSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVKSKT 521
Query: 409 EIFIAATPFLVK 420
E+ I P +V
Sbjct: 522 ELVILLKPTVVD 533
>gi|301382657|ref|ZP_07231075.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
tomato Max13]
gi|302060641|ref|ZP_07252182.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
tomato K40]
gi|302130950|ref|ZP_07256940.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|331016027|gb|EGH96083.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 701
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 62/352 (17%), Positives = 134/352 (38%), Gaps = 30/352 (8%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + ++ + IA L R + + +D L V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401
Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
+ + +R + + Q + + ++++ L+I QV ++ I E
Sbjct: 402 TSAESKAEERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460
Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
D KQ+G + + ++S + A+
Sbjct: 461 DYNKQLGVRWGGSTNTSRNGKWTTYGLDDNGDEGGNTNANLTSNIPFVDLGAADATTGIG 520
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + L A+E+ +++P + ++A G + Y+ SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V+ + + L TP + RI + ++ EP +P + + + V + G
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691
>gi|330977147|gb|EGH77105.1| type II and III secretion system protein:NolW-like protein
[Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 701
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 51/257 (19%), Positives = 108/257 (42%), Gaps = 23/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------SK 228
++++ L+I QV ++ I E D KQ+G + + ++SG +
Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAG 495
Query: 229 SFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ + + + V + + L A+E+ +++P +
Sbjct: 496 NTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP
Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR
Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674
Query: 402 RFNREETEIFIAATPFL 418
+ ++E+ + TP +
Sbjct: 675 VVSESKSELLVFLTPRI 691
>gi|150260167|ref|ZP_01916895.1| general secretion pathway protein D [Yersinia pestis CA88-4125]
gi|165925049|ref|ZP_02220881.1| general secretion pathway protein D [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937283|ref|ZP_02225847.1| general secretion pathway protein D [Yersinia pestis biovar
Orientalis str. IP275]
gi|167419065|ref|ZP_02310818.1| general secretion pathway protein D [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167466632|ref|ZP_02331336.1| general secretion pathway protein D [Yersinia pestis FV-1]
gi|218927995|ref|YP_002345870.1| general secretion pathway protein D [Yersinia pestis CO92]
gi|229840719|ref|ZP_04460878.1| general secretion pathway protein D [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842725|ref|ZP_04462879.1| general secretion pathway protein D [Yersinia pestis biovar
Orientalis str. India 195]
gi|115346606|emb|CAL19488.1| general secretion pathway protein D [Yersinia pestis CO92]
gi|149289575|gb|EDM39652.1| general secretion pathway protein D [Yersinia pestis CA88-4125]
gi|165914757|gb|EDR33370.1| general secretion pathway protein D [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923249|gb|EDR40400.1| general secretion pathway protein D [Yersinia pestis biovar
Orientalis str. F1991016]
gi|166963059|gb|EDR59080.1| general secretion pathway protein D [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|229690205|gb|EEO82260.1| general secretion pathway protein D [Yersinia pestis biovar
Orientalis str. India 195]
gi|229697085|gb|EEO87132.1| general secretion pathway protein D [Yersinia pestis biovar
Orientalis str. PEXU2]
Length = 640
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 10/267 (3%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ + +V+ L+I QV ++ I E + +G + S +
Sbjct: 325 TADPDMMLALGEVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNS 383
Query: 232 ADF--GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ + + +++ +L AL T LA P++ + A F
Sbjct: 384 DGLLNNNGWGIATTITGLTAGFYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNV 443
Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
G + + +T S++ GV+L P + + L I+ EVS
Sbjct: 444 GQEVPVLISTQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTV 503
Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ R + V + SG T+V+ GLL + +P L +P++G LFR ++
Sbjct: 504 NTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTK 563
Query: 403 FNREETEIFIAATPFLVKPVAMRDLSR 429
E++ + + P +++ +
Sbjct: 564 EKVEKSNLILFIKPTILRESDDYSVVT 590
>gi|325275672|ref|ZP_08141565.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51]
gi|324099192|gb|EGB97145.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51]
Length = 418
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 46/236 (19%), Positives = 98/236 (41%), Gaps = 2/236 (0%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+++ L++ QV ++ I E D K +G + P + G
Sbjct: 175 QLVAQLDVPVR-QVAIEARIVEANVDYEKALGVRWGSPLYGDNPLPGKSLFVDLGVERAG 233
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ + + L A+E++ +++P + ++A G + Y+ + S
Sbjct: 234 SSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETTKS- 292
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
GATSV+ + + L TP + ++ + ++ EP ++P R + + V +
Sbjct: 293 GATSVSFREASLSLEVTPQITPDNKVIMAVRVTKDEPDYVNALNNVPPIRKNEVNAKVRV 352
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
G TIV+ G+ + + +P L +P +G LFR +++E+ + TP +
Sbjct: 353 ADGETIVIGGVYSTSQNNVVDKVPFLGDLPYVGRLFRRDALQEKKSELLVFLTPRI 408
>gi|332702049|ref|ZP_08422137.1| type II and III secretion system protein [Desulfovibrio africanus
str. Walvis Bay]
gi|332552198|gb|EGJ49242.1| type II and III secretion system protein [Desulfovibrio africanus
str. Walvis Bay]
Length = 524
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 81/455 (17%), Positives = 147/455 (32%), Gaps = 70/455 (15%)
Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR-- 85
P + +A I E K ++ +P + + + D + V+ R
Sbjct: 56 PSPKPHAPEITDIGSEGASAKPATVQR------SLPDTLVTLRLRDTEVSAVLRALGRLA 109
Query: 86 --TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-----V 138
+ L G+AN+ + Q+ + + + R I+ +++
Sbjct: 110 KVNLLLSPGVQGKANLDVRNASWSQVFEGLLKSHGLTWAWQGQVLRVISAEDLQREASVS 169
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM----NLLNIAG-- 192
+ + L A +L E V+ N L I
Sbjct: 170 NAMGGNLALRQTSVVAVRYADAAKLKENLQPLMTTGPTGQPMGTLVVDEHNNALIIQAAP 229
Query: 193 ----------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
Q+ LK I E +D + +G Q +SG + A GG
Sbjct: 230 EESRRILRLVEQLDKPRAQILLKAHIVETTKDTARDLGVQWGGVYQTSGSGNNLFAIPGG 289
Query: 237 K--------------------------------FVSEGGDFSVKGVLDRFSFETVLHALE 264
+ G L E L AL+
Sbjct: 290 TNGRLEDNKWVYDSTLGTGIGGQGFGVNLPADLAAGGTQLGLMFGKLGGSILELQLSALQ 349
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ L+ P+++ + Q A FT G+ + + G +V D + L TP V+
Sbjct: 350 ENGRVNILSSPSISTLDNQMA-FTENGERVPYVATDEEGDLNVKFEDAVLRLEITPHVID 408
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
++ L+I E P ++ +T + + G T+V++GL +D +
Sbjct: 409 REQLKLKILVRKDEVDTSRTVQGNPFIIKKRTETVLVVDDGETVVISGLSRDFDSSRDQK 468
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P L IP+LG LF+ + E E+ I TP ++
Sbjct: 469 VPWLGDIPLLGRLFQRNVDKAEMEEVLIFITPHVL 503
>gi|77359203|ref|YP_338778.1| general secretion pathway protein D [Pseudoalteromonas haloplanktis
TAC125]
gi|76874114|emb|CAI85335.1| General secretion pathway protein D [Pseudoalteromonas haloplanktis
TAC125]
Length = 688
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 74/396 (18%), Positives = 133/396 (33%), Gaps = 68/396 (17%)
Query: 88 YLFGKNV--GQANVILIGHDGKQMLNLDILIERDIAHLEMT-------LRRFIADSNIRV 138
+L K V G+ N +++ +G+ LI+R LE L A+ ++V
Sbjct: 231 FLIPKVVADGRTNSVIVSGEGQARTRAIELIKRLDGELESQGNTKVFYLNYAKAEDLVKV 290
Query: 139 ----------EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
+ + + S A S + + S + V+ L
Sbjct: 291 LQGVSKSLTDDTQGGSATKTRTRSNNETSIEAHPDSNSLI--ITAQPDTMRSLESVIERL 348
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------- 241
+I QV ++ I EV G Q + G
Sbjct: 349 DIR-RAQVLVEAIIIEVMEGDGINFGLQWISEQGGMLQFNNGTTVPVGALAVAAEQARDT 407
Query: 242 --------------------------------GGDFSVKGVLDRFSFETVLHALERATAI 269
GG + + + + ++ A+ +
Sbjct: 408 TVSKNIIGTESGTITQVDETTKGDYGPLASLLGGINGLAMGVIKNDWGAIVQAVSTDSNS 467
Query: 270 RTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
LA P++T + + AS G + +++ +V + G+ L TP +
Sbjct: 468 NILATPSITTMDNEEASILVGQEVPIITGSQTGSNNTNPFQTVERQEVGIKLKVTPQIND 527
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ L I+ EVS S R TTV GG +VL GL+ +D+Q+
Sbjct: 528 GSAVQLTIEQEVSSVSGATAVD--ISVNKRSIKTTVMADDGGMVVLGGLIDEDVQESVSK 585
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+PLL IPILG LF+++ R + + + P +++
Sbjct: 586 VPLLGDIPILGHLFKSTNTTRRKRNLIVFIRPTIIR 621
>gi|169634604|ref|YP_001708340.1| putative general secretion pathway protein [Acinetobacter baumannii
SDF]
gi|260556356|ref|ZP_05828575.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
19606]
gi|169153396|emb|CAP02525.1| putative general secretion pathway protein [Acinetobacter
baumannii]
gi|260410411|gb|EEX03710.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
19606]
Length = 756
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 67/300 (22%), Positives = 110/300 (36%), Gaps = 45/300 (15%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L++ QV ++ I EV Q+G Q ++ +SG + G S
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGKDADQLGVQWALGDINSGIGLINFTNAGSSLASL 440
Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278
+ G S + ++ AL+ TA L+ P++
Sbjct: 441 AAGYLTGGAAGLGSAIGAGSSIALGKYKEGADGSRQLYGALIQALKENTASNLLSTPSIV 500
Query: 279 AISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ + A G + T S + T+V D GV L P + G + L I
Sbjct: 501 TMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVRLEI 560
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ EVS R T V G T+VL GL+ DD++ ++GIP LS IP
Sbjct: 561 EQEVSNVQASKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGLSSIP 620
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
LG LFR+ + + + + P +V +D + R N++Y
Sbjct: 621 YLGRLFRSDTRSNTKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQLY 665
>gi|126207688|ref|YP_001052913.1| type II secretory pathway, component HofQ [Actinobacillus
pleuropneumoniae L20]
gi|165975656|ref|YP_001651249.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|190149472|ref|YP_001967997.1| type II secretory pathway, component HofQ [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307258421|ref|ZP_07540162.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|126096480|gb|ABN73308.1| type II secretory pathway, component HofQ [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165875757|gb|ABY68805.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|189914603|gb|ACE60855.1| type II secretory pathway, component HofQ [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306867605|gb|EFM99452.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 432
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 49/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%)
Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + S K ++ L+ +Q+ ++ I + + L+++G + I ++G K +
Sbjct: 155 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 214
Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + ++ + L ALE+ + +A P L
Sbjct: 215 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 274
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
+ + AS G + Y + ++ + + L TP + + +I L + + P
Sbjct: 275 NKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPN 334
Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ + + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF
Sbjct: 335 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 394
Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
+S + E+ I TP++VK +
Sbjct: 395 HSSDKISKRELVIFVTPYIVKNGQPQ 420
>gi|297537923|ref|YP_003673692.1| type II and III secretion system protein [Methylotenera sp. 301]
gi|297257270|gb|ADI29115.1| type II and III secretion system protein [Methylotenera sp. 301]
Length = 675
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 74/467 (15%), Positives = 156/467 (33%), Gaps = 73/467 (15%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P E I + + + I+ L+K I P ++ V D
Sbjct: 190 PVSLELRDVNIKVVFEALSRATGINFILDKDIK---PDTKANIFVKKARIEDAIEMVLSS 246
Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
+ S T+ +F L + + + L + ++ +
Sbjct: 247 NALQKKILSENTVLVFP----STQQKLKDYQDLMIRSF-YLSNTTAKQVAALIKSMLKTK 301
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
+I V+ + +V+ + ++E ++ + +
Sbjct: 302 DIFVDDRLNMMVMRDTP-------EVIRIAEKLVAANDM------------------ADP 336
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
+V L++ + EV R L+++G ++ + V+ + +
Sbjct: 337 EVMLEIEVLEVSRSRLQELGVEYPNRIGVNSLIPITTVTSATGVVASSTVNTPTQLTLEG 396
Query: 255 SFET-----------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
++ + + L+ P + + + A G + T +S+
Sbjct: 397 LLNLSKGRFDVSPNPAVNFRKTTGDVNLLSNPRIRVRNNEKAKILVGDKVPVITTTSTAN 456
Query: 304 ---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKAD 357
+ SV D G+ L P + + + ++I EVS I N + + R A+
Sbjct: 457 VGISESVQYVDVGLKLDVEPRITADNYVNIKIALEVSSLGERTITRNGATVYTIGTRDAN 516
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T + L G T VLAGL+ DD ++ +P L IP++G LF N + + +TEI +A TP
Sbjct: 517 TILRLKDGETQVLAGLISDDERKNASKLPGLGDIPLIGRLFSNQQDQKNKTEIVLAITPR 576
Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
++ +A + ++ I + +
Sbjct: 577 IISNIA-----------RPSAEVSEYWSGTDAVINDKLQTTLPVTPA 612
>gi|77361631|ref|YP_341206.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
[Pseudoalteromonas haloplanktis TAC125]
gi|76876542|emb|CAI87764.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
[Pseudoalteromonas haloplanktis TAC125]
Length = 696
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 60/309 (19%), Positives = 118/309 (38%), Gaps = 48/309 (15%)
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
++ V+ ++T+++ ++I+ +R VE + +
Sbjct: 411 PRGSVSVDQRTNTLLMKDTAKSIESVRRMVETLDIPV----------------------- 447
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSI--------------------TGSSSGPSKSFA 231
QV ++ + VR ++ + +G + G+ S
Sbjct: 448 --KQVVIEARMVTVRDNVTEDLGVRWGFSDQQGTDGISGTLEGAENISNGNIPSLSDRLN 505
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
+ S + + + + L ALE +A P +TA + Q A G
Sbjct: 506 VNLPVANPSASIGMHIAKLANGTLIDLELTALEEENKGEIIASPRITAANQQKARIEQGT 565
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS- 350
+ Y +SS GAT+V+ + L TP + ++ L + V G P+
Sbjct: 566 EIPYVESASS-GATTVSFKKAVLSLEVTPHITPDNKVILNLIITQDTRGDTVQTGTGPAV 624
Query: 351 -YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
++ +T V + +G T+VL G+ + I + +PLL IP +G LF+++ E+ E
Sbjct: 625 AIDTQQIETQVLVENGQTVVLGGIFQQQIINSTKKVPLLGDIPYIGRLFKSTSEFNEKRE 684
Query: 410 IFIAATPFL 418
+ I TP +
Sbjct: 685 LLIFVTPKI 693
>gi|253701270|ref|YP_003022459.1| type IV pilus secretin PilQ [Geobacter sp. M21]
gi|251776120|gb|ACT18701.1| type IV pilus secretin PilQ [Geobacter sp. M21]
Length = 926
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 20/243 (8%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------ 244
A E QV ++ I E + +G Q ++ S + F
Sbjct: 689 APEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASMAGINSVDTGFGGVVSAAGPGAT 748
Query: 245 --------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
S + + L A ++ ++ P + ++ ++A + G Y+
Sbjct: 749 GAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKVVTLNNKAAKISQGQSIPYQ 808
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
T S+ T + + L TP + + G + ++I+ + P G P ++A
Sbjct: 809 TTSAEG--TKTEFVEAALTLEVTPHITADGSVSMKIKASNNSP----GTGSPPPINKKEA 862
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T + + +G T V+ G+ D + G+P LS IP+LG LF+++ + +TE+ I TP
Sbjct: 863 TTELVVSNGDTTVIGGIYVDSETESDTGVPFLSDIPLLGWLFKSNAKQKTKTELLIFITP 922
Query: 417 FLV 419
++
Sbjct: 923 KII 925
>gi|330971735|gb|EGH71801.1| type II and III secretion system protein:NolW-like protein
[Pseudomonas syringae pv. aceris str. M302273PT]
Length = 701
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 54/257 (21%), Positives = 108/257 (42%), Gaps = 23/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAA 232
++++ L+I QV ++ I E D KQ+G + + ++SG A
Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAG 495
Query: 233 DFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ G S + V + + L A+E+ +++P +
Sbjct: 496 NTGSSVTSNVPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP
Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR
Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674
Query: 402 RFNREETEIFIAATPFL 418
+ ++E+ + TP +
Sbjct: 675 VVSESKSELLVFLTPRI 691
>gi|283787974|ref|YP_003367839.1| fimbrial protein HofQ [Citrobacter rodentium ICC168]
gi|282951428|emb|CBG91127.1| putative fimbrial protein HofQ [Citrobacter rodentium ICC168]
Length = 412
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 95/428 (22%), Positives = 159/428 (37%), Gaps = 51/428 (11%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
+A L P+ A + + E+ + + + + LV P +
Sbjct: 6 LAALIAVLHPVLAGKAQNVTLVVDEVPVAQVLQ---------ALAEQERRNLVVAPDVSG 56
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
VV R + K Q + G + + +I A+ + + N R
Sbjct: 57 VVSLRLRD--VPWKQALQT---VASSAGLVLRQEEAIIHVHSANWQRDEAARLQAENARR 111
Query: 139 EMV----SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
E + + L A EL++ Q + N + N L I
Sbjct: 112 EASLPLENRHITL--------HYADAAELAKA--GQKLLSARGNMTVDTRTNRLLIRDTP 161
Query: 195 ------------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
QV L I + L+++G + ++ + S + + G
Sbjct: 162 PTLTLLEQWAAQMDLPVGQVELAAHIVTINEKSLRELGVKWTLAEAQSTGAVGDVSTLGS 221
Query: 237 KFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
V G +D + L ALE+ + +A P L A Q AS G +
Sbjct: 222 DLSVAAATTRVGFNIGRIDGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEI 281
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSY 351
Y+ S +GATSV + + + TP VL GRI L++ + P V+ G++ +
Sbjct: 282 PYQVSSGESGATSVEFKEAVLGMEVTPVVLQKGRIRLKLHISQNMPGQVLQQADGEVLAI 341
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
++ DT VE+ SG T+ L G+ ++ +E +PLL IP LG LFR+ E E+
Sbjct: 342 DKQEIDTQVEVKSGETLALGGIFSRKNKRGQESVPLLGDIPWLGQLFRHDGKENERRELV 401
Query: 412 IAATPFLV 419
+ TP LV
Sbjct: 402 VFITPRLV 409
>gi|187931580|ref|YP_001891564.1| type IV pili secretin component [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712489|gb|ACD30786.1| type IV pili secretin component [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 590
Score = 180 bits (456), Expect = 6e-43, Method: Composition-based stats.
Identities = 72/416 (17%), Positives = 156/416 (37%), Gaps = 34/416 (8%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
P A + + + +++ ++ + + +D+++V P ++++ S
Sbjct: 180 PISISFKDASVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIILVSK 235
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
L K + + + + L++ +R + + + FI + +
Sbjct: 236 G---LATKKMSSISYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292
Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
+ +G + + + S A + T + K+V+N ++I DQV ++
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349
Query: 201 TIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251
I EV R ++GF + + + G + + + G
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPTPVDTFVGTTAKLAY 409
Query: 252 ---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
E + ALE + +A P L + Q A F G+ + ++++GA +V
Sbjct: 410 TIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVA 468
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELP 363
+ + L TP + G I + I + P + R+ T V
Sbjct: 469 FQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTK 528
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++
Sbjct: 529 DGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 584
>gi|149911025|ref|ZP_01899654.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36]
gi|149805928|gb|EDM65914.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36]
Length = 532
Score = 180 bits (456), Expect = 6e-43, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 18/243 (7%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV L+V I EV + + G ++ S+ SF G L
Sbjct: 264 RQVLLEVKIMEVTLNDGYKQGIDWNVNNSNVAADSSFNFSITDITDLASGAGVF--TLAG 321
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----------T 302
F + L+ + L+ P +TA++ Q A G + T SS
Sbjct: 322 NDFSAAISLLKTQGDVNVLSSPRVTALNNQKAVIKVGSDEYFVTGYSSTKSTSSDDDSIE 381
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYR--VRKAD 357
+T G+ L TP + S G + L + EV++ V ++P + VR+ D
Sbjct: 382 QDVELTPFFSGIALDVTPQIDSDGGVLLHVHPSIIEVTDSNKIVAGIELPLAKSDVRETD 441
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T V+ SG IV+ GL+K + L +P L IP LG LF + ++TE+ I P
Sbjct: 442 TVVKAKSGEIIVIGGLMKTANKDLVSKVPFLGDIPWLGELFTYRSQSVQKTELIILIKPI 501
Query: 418 LVK 420
+V
Sbjct: 502 VVD 504
>gi|22127080|ref|NP_670503.1| general secretion pathway protein D [Yersinia pestis KIM 10]
gi|45442607|ref|NP_994146.1| general secretion pathway protein D [Yersinia pestis biovar
Microtus str. 91001]
gi|108806450|ref|YP_650366.1| general secretion pathway protein D [Yersinia pestis Antiqua]
gi|108813180|ref|YP_648947.1| general secretion pathway protein D [Yersinia pestis Nepal516]
gi|145597997|ref|YP_001162073.1| general secretion pathway protein D [Yersinia pestis Pestoides F]
gi|153949658|ref|YP_001399937.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
31758]
gi|162421010|ref|YP_001607617.1| general secretion pathway protein D [Yersinia pestis Angola]
gi|166010333|ref|ZP_02231231.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212712|ref|ZP_02238747.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399809|ref|ZP_02305327.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167425419|ref|ZP_02317172.1| general secretion pathway protein D [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229837688|ref|ZP_04457848.1| general secretion pathway protein D [Yersinia pestis Pestoides A]
gi|229903625|ref|ZP_04518738.1| general secretion pathway protein D [Yersinia pestis Nepal516]
gi|270487407|ref|ZP_06204481.1| general secretion pathway protein D [Yersinia pestis KIM D27]
gi|294503003|ref|YP_003567065.1| general secretion protein [Yersinia pestis Z176003]
gi|21960134|gb|AAM86754.1|AE013921_5 putative general secretion protein [Yersinia pestis KIM 10]
gi|45437472|gb|AAS63023.1| putative general secretion protein [Yersinia pestis biovar Microtus
str. 91001]
gi|108776828|gb|ABG19347.1| general secretion pathway protein D [Yersinia pestis Nepal516]
gi|108778363|gb|ABG12421.1| general secretion pathway protein D [Yersinia pestis Antiqua]
gi|145209693|gb|ABP39100.1| general secretion pathway protein D [Yersinia pestis Pestoides F]
gi|152961153|gb|ABS48614.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
31758]
gi|162353825|gb|ABX87773.1| general secretion pathway protein D [Yersinia pestis Angola]
gi|165990819|gb|EDR43120.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206004|gb|EDR50484.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167050517|gb|EDR61925.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055819|gb|EDR65603.1| general secretion pathway protein D [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229679395|gb|EEO75498.1| general secretion pathway protein D [Yersinia pestis Nepal516]
gi|229704065|gb|EEO91077.1| general secretion pathway protein D [Yersinia pestis Pestoides A]
gi|262361038|gb|ACY57759.1| general secretion protein [Yersinia pestis D106004]
gi|262364982|gb|ACY61539.1| general secretion protein [Yersinia pestis D182038]
gi|270335911|gb|EFA46688.1| general secretion pathway protein D [Yersinia pestis KIM D27]
gi|294353462|gb|ADE63803.1| general secretion protein [Yersinia pestis Z176003]
gi|320014111|gb|ADV97682.1| general secretion pathway protein D [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 640
Score = 180 bits (456), Expect = 6e-43, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 10/267 (3%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ + +V+ L+I QV ++ I E + +G + S +
Sbjct: 325 TADPDMMLALGEVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNS 383
Query: 232 ADF--GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ + + +++ +L AL T LA P++ + A F
Sbjct: 384 DGLLNNNGWGIATTITGLTAGFYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNV 443
Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
G + + +T S++ GV+L P + + L I+ EVS
Sbjct: 444 GQEVPVLISTQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTV 503
Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ R + V + SG T+V+ GLL + +P L +P++G LFR ++
Sbjct: 504 NTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTK 563
Query: 403 FNREETEIFIAATPFLVKPVAMRDLSR 429
E++ + + P +++ +
Sbjct: 564 EKVEKSNLILFIKPTILRESDDYSVVT 590
>gi|156936449|ref|YP_001440365.1| outer membrane porin HofQ [Cronobacter sakazakii ATCC BAA-894]
gi|156534703|gb|ABU79529.1| hypothetical protein ESA_04350 [Cronobacter sakazakii ATCC BAA-894]
Length = 390
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 5/230 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
QV L I + + L+++G + S + + + G +
Sbjct: 158 QVELAAHIVTINQQSLRELGVKWSTADADGPTTLYHPTTISADLAVANATTRLGFNIGRI 217
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
D E L ALE+ + +A P L A Q AS G + Y+ S +GATSV +
Sbjct: 218 DGRMLEFELSALEQKQKVEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEFKE 277
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ + TPT+ GRI L+++ + P + G++ + ++ +T VE+ G T+
Sbjct: 278 AVLGMEVTPTIGQDGRIKLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGETLA 337
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G+ + + E +P+L IP+ G+LFR+ + E+ E+ + TP ++
Sbjct: 338 LGGIFQQKNKAGNEQVPVLGNIPLFGSLFRHDGKDNEKRELVVFITPRII 387
>gi|253690245|ref|YP_003019435.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756823|gb|ACT14899.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 424
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 6/231 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
QV L I + + L+++G + S+ + +F + + L
Sbjct: 190 QVQLAAHIVTISSEHLQELGVNWGLGEGSAANNALRLNNFNVGLPVDTPAINAGFHLARL 249
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ +
Sbjct: 250 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 309
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
+ + TP +L GRI L ++ + P + + G+ + ++ T V + G TI
Sbjct: 310 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 369
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VL G+ + + +P+L ++P+ G LFRN E+ I TP L+
Sbjct: 370 VLGGIFQQQKKSSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420
>gi|170023253|ref|YP_001719758.1| general secretion pathway protein D [Yersinia pseudotuberculosis
YPIII]
gi|169749787|gb|ACA67305.1| general secretion pathway protein D [Yersinia pseudotuberculosis
YPIII]
Length = 640
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 47/267 (17%), Positives = 97/267 (36%), Gaps = 10/267 (3%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ + +V+ L+I QV ++ I E + +G + S +
Sbjct: 325 TADPDMMLALGEVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNS 383
Query: 232 ADF--GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ + + +++ +L AL LA P++ + A F
Sbjct: 384 DGLLNNNGWGIATTITGLTAGFYKGNWDVLLSALSTNKNNNILATPSIVTLDNMEAEFNV 443
Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
G + + +T S++ GV+L P + + L I+ EVS
Sbjct: 444 GQEVPVLISTQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTV 503
Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ R + V + SG T+V+ GLL + +P L +P++G LFR ++
Sbjct: 504 NTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTK 563
Query: 403 FNREETEIFIAATPFLVKPVAMRDLSR 429
E++ + + P +++ +
Sbjct: 564 EKVEKSNLILFIKPTILRESDDYSVVT 590
>gi|163802236|ref|ZP_02196131.1| general secretion pathway protein D precursor [Vibrio sp. AND4]
gi|159174041|gb|EDP58851.1| general secretion pathway protein D precursor [Vibrio sp. AND4]
Length = 675
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 71/453 (15%), Positives = 156/453 (34%), Gaps = 83/453 (18%)
Query: 49 KISIGLNKVIIL-QVPVDVQDV-LVSDPTKADVVVHSPRT---MYLFGKNVGQAN----- 98
I + + ++ ++ ++ V D V + + + + N
Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKDIELVELRNASAAEMVRIVEALNKTTNQKSTP 220
Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
++ +++ D + + L L +A ++ D V
Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280
Query: 146 VLHGMVRTIQDSQRA------------VELSETFLSQSGRNQYANS---SSKKVMNLLNI 190
VL G+ +Q ++A V ++ + S + + V+ L+I
Sbjct: 281 VLKGVSDNLQAEKQAGQKNTSSAQRGEVVIASHEATNSLVLTAPPDIMMALQDVIAQLDI 340
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSF------------- 230
QV ++ I E+ +G Q I ++G S
Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGNLDTGAVIQYGNTGASIGNVMVGLEEAKDQTR 399
Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
+ D+ + GG L + ++ A+ + L
Sbjct: 400 TEYYTNSDGERTPYDVTESGDYSTLAAALGGVNGAAMSLVMGDWTALISAVSSDSNSNIL 459
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
+ P++T + ASF G + T ++ +V + G+ L P +
Sbjct: 460 SSPSITVMDNGEASFIVGEEVPVITGSTSGANNDNPFQTVDRKEVGIKLKVVPQINEGDS 519
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + +PL
Sbjct: 520 VHLDIEQEVSNVLGAEGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERAMESESKVPL 578
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L IP++G LF+++ ++ + + P +++
Sbjct: 579 LGDIPVIGQLFKSTSTQTQKRNLMVFIKPTIIR 611
>gi|51597379|ref|YP_071570.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
32953]
gi|186896487|ref|YP_001873599.1| general secretion pathway protein D [Yersinia pseudotuberculosis
PB1/+]
gi|51590661|emb|CAH22303.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
32953]
gi|186699513|gb|ACC90142.1| general secretion pathway protein D [Yersinia pseudotuberculosis
PB1/+]
Length = 640
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 10/267 (3%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ + +V+ L+I QV ++ I E + +G + S +
Sbjct: 325 TADPDMMLALGEVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNS 383
Query: 232 ADF--GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ + + +++ +L AL T LA P++ + A F
Sbjct: 384 DGLLNNNGWGIATTITGLTAGFYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNV 443
Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
G + + +T S++ GV+L P + + L I+ EVS
Sbjct: 444 GQEVPVLISTQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTV 503
Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ R + V + SG T+V+ GLL + +P L +P++G LFR ++
Sbjct: 504 NTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTK 563
Query: 403 FNREETEIFIAATPFLVKPVAMRDLSR 429
E++ + + P +++ +
Sbjct: 564 EKVEKSNLILFIKPTILRESDDYSVVT 590
>gi|332090365|gb|EGI95463.1| transport protein hofQ [Shigella boydii 3594-74]
Length = 385
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ + + +I ++ + + +
Sbjct: 65 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 124
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 125 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 183
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 184 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 243
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 244 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQV 303
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 304 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 363
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 364 DGKEYERRELVVFITPRLV 382
>gi|313672368|ref|YP_004050479.1| type ii and iii secretion system protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939124|gb|ADR18316.1| type II and III secretion system protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 425
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 24/252 (9%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--------------------AA 232
Q+ ++ I ++ K +G Q + + +
Sbjct: 170 SQQIMIEAKIVRTTKNAGKDLGIQWGVNVNDRTSKNFPYSVQVGAGADPNRNYIVNLPIS 229
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
D + G ++ + F L+ALE + + P + ++ Q A SG +
Sbjct: 230 DVARAGIGAGVGVTLGNFNNTFVLNAKLNALETKGEAKVVHSPKILTMNNQKAKLESGEE 289
Query: 293 ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
+ +++T + + VL TP +L+ G I L + E+SE + ++
Sbjct: 290 IRFRETKTSTTTTTQEIEIQKDEAKTVLDITPQILNDGNILLNLAVELSEFDWTKSVDNI 349
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P+ KA+T V L G T+++ GL K+++ + + +PLLSKIP+LGALFRN E
Sbjct: 350 PAKNKNKAETQVILKDGETLIIGGLKKENVFKNEAAVPLLSKIPLLGALFRNKSSGEELN 409
Query: 409 EIFIAATPFLVK 420
E+ I TP +++
Sbjct: 410 ELLIFVTPKIMR 421
>gi|225850118|ref|YP_002730352.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1]
gi|225646446|gb|ACO04632.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1]
Length = 608
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 15/244 (6%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------ 238
Q+ ++ I ++ + +G Q S + + G
Sbjct: 363 KRPYQIAIEARIVQIESSYKRDLGIQWGFAASGGAGNIGYGVTTGTATGYMFDFPAGNVD 422
Query: 239 VSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
V +G S+ V S + L ALE+ R L+ P + I G+ A + G + Y T
Sbjct: 423 VGKGASMSIGIVRGLTTSLDIQLSALEQIGKSRILSRPKVITIDGEGAEISQGIEVPYST 482
Query: 298 --VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
+ V + L+ P G I + I+ P G P +
Sbjct: 483 FGAAGGAAIARVQFKKALLKLNVIPRTTLDGNIIMNIELTQDVPDFGRAVNGQPPINTKS 542
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+ V G TIV+ G+L+ Q+ + G+P L +P+ G LF+N N E+ I T
Sbjct: 543 ITSKVIAKDGTTIVIGGILEKTEQETENGVPGLRNVPLFGWLFKNKGINTTNKELLIFIT 602
Query: 416 PFLV 419
P ++
Sbjct: 603 PKII 606
>gi|315125823|ref|YP_004067826.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913]
gi|315014337|gb|ADT67675.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913]
Length = 688
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 59/293 (20%), Positives = 100/293 (34%), Gaps = 47/293 (16%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S + V+ L+I QV ++ I EV G Q +
Sbjct: 332 TAQPDTMRSLESVIERLDIR-RAQVLVEAIIIEVMEGDGVNFGLQWISEQGGMLQFNNGT 390
Query: 232 ADFGGKFVSE---------------------------------------GGDFSVKGVLD 252
G GG + +
Sbjct: 391 TVPVGSLAVAAEQARDKTVTKNIIGTESGTVTKYDETTEGDYGPLASLLGGINGLAMGVI 450
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSV 307
+ + ++ A+ T LA P++T + + AS G + T S + +V
Sbjct: 451 KNDWGAIVQAVSTDTNSNILATPSITTMDNEEASILVGQEVPIITGSQTGSNNENPFQTV 510
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ G+ L TP + + L I+ EVS S R TTV GG
Sbjct: 511 ERQEVGIKLKVTPQINDGSAVQLTIEQEVSSVSGATAVD--ISVNKRAIKTTVMADDGGM 568
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+VL GL+ +D+Q+ +PLL IPILG LF+++ + + + + P +++
Sbjct: 569 VVLGGLIDEDVQESVSKVPLLGDIPILGHLFKSTNTTKRKRNLIVFIRPTIIR 621
>gi|209696322|ref|YP_002264253.1| general secretion pathway protein D [Aliivibrio salmonicida
LFI1238]
gi|208010276|emb|CAQ80608.1| general secretion pathway protein D [Aliivibrio salmonicida
LFI1238]
Length = 675
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 58/301 (19%), Positives = 110/301 (36%), Gaps = 46/301 (15%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----- 218
++T + K V+ L+I QV ++ I E+ +G Q
Sbjct: 309 ADTNAIIITAPPDIMRAVKDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLKTG 367
Query: 219 --ITGSSSGPSKSFA--------------------------------ADFGGKFVSEGGD 244
I S++G S D+G + GG
Sbjct: 368 AMIQYSNTGASIGGTMVGLEEAKDSTTTTAVYDSDDNFQRNETTTEEGDYGALASALGGV 427
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVS 299
+ + ++ A+ + L+ P++T + ASF G + +
Sbjct: 428 QGAAVSIMMGDWTALITAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTSGSN 487
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ +V + G+ L P + + L I+ EVS + A D+ + R+ T+
Sbjct: 488 NENPFQTVERKEVGIKLKVVPQINEGNSVRLDIEQEVSNVLGANGAVDV-RFAKRQLSTS 546
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V + G +VL GL+ + + + +P L IPILG LF+++ E+ + I P ++
Sbjct: 547 VMVEDGKMLVLGGLIDERAMESESKVPFLGDIPILGYLFKSTSTQVEKKNLMIFIKPTII 606
Query: 420 K 420
+
Sbjct: 607 R 607
>gi|307247187|ref|ZP_07529238.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307249414|ref|ZP_07531405.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307251732|ref|ZP_07533636.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307253966|ref|ZP_07535818.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307256227|ref|ZP_07538014.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307262791|ref|ZP_07544418.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|306856325|gb|EFM88477.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306858556|gb|EFM90621.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306860818|gb|EFM92827.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306863170|gb|EFM95112.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306865408|gb|EFM97304.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306871936|gb|EFN03653.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 429
Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats.
Identities = 49/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%)
Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + S K ++ L+ +Q+ ++ I + + L+++G + I ++G K +
Sbjct: 152 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 211
Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + ++ + L ALE+ + +A P L
Sbjct: 212 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 271
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
+ + AS G + Y + ++ + + L TP + + +I L + + P
Sbjct: 272 NKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPN 331
Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ + + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF
Sbjct: 332 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 391
Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
+S + E+ I TP++VK +
Sbjct: 392 HSSDKISKRELVIFVTPYIVKNGQPQ 417
>gi|91224969|ref|ZP_01260228.1| general secretion pathway protein D precursor [Vibrio alginolyticus
12G01]
gi|91190215|gb|EAS76485.1| general secretion pathway protein D precursor [Vibrio alginolyticus
12G01]
Length = 672
Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats.
Identities = 70/383 (18%), Positives = 141/383 (36%), Gaps = 62/383 (16%)
Query: 96 QANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
+ N ILI D K L ++ + D+ R + N + E + D VL G+ +
Sbjct: 232 RTNAILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKNAKAEDLVD--VLKGVSDNL 289
Query: 155 QDSQRA-----------VELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKV 200
Q ++A V ++ + S + + V++ L+I QV ++
Sbjct: 290 QAEKQAGQKTSGASRGEVVIAAHAATNSLVLTAPPDIMMALQDVISQLDIR-RAQVLIEA 348
Query: 201 TIAEVRRDILKQIGFQHSI--------------------------------------TGS 222
I E+ +G Q G
Sbjct: 349 LIVEMSEGDGINLGVQWGSLETGAVIQYGNSGAPIGQVMVGLEEAKDQTRTEYYTNSNGE 408
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ + + D+ + G + + ++ A+ + L+ P++T +
Sbjct: 409 RTPYDVTESGDYSTLASALSGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSITVMDN 468
Query: 283 QSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
ASF G + T ++ +V + G+ L P + + L I+ EVS
Sbjct: 469 GEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVS 528
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG L
Sbjct: 529 NVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHL 587
Query: 398 FRNSRFNREETEIFIAATPFLVK 420
F+++ E+ + + P +++
Sbjct: 588 FKSTSTQTEKRNLMVFIKPTIIR 610
>gi|238750896|ref|ZP_04612393.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380]
gi|238710810|gb|EEQ03031.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380]
Length = 316
Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats.
Identities = 73/321 (22%), Positives = 132/321 (41%), Gaps = 29/321 (9%)
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
S AD + ++ ++ KN G A IL + K + +++ I ++
Sbjct: 2 SAAAIADYELVGKNSVIVYAKNEGVAEFILFDQNHKPITKSVVMVNNIITLATKRIQAEY 61
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS-----SSKKVMN 186
S I + + ++ +L G V + + V + + N ++N
Sbjct: 62 PGSIIDISKIGNSYILTGTVESEEARDTIVNIVGEAIGSKKNKGSDNQYINTNDYPGIVN 121
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
+ + +QV +K+TIAEV +D + IG S G++ G + F
Sbjct: 122 KIKLPQSNQVNVKLTIAEVTKDFTENIGINWSTIGNNVGAFQFF---------------- 165
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ T++HA+ R LAEP L+ +SG++ASF GG+ + S +
Sbjct: 166 ---QFNAKGISTLVHAINDDAIARVLAEPNLSVLSGETASFLVGGEIPIASTSQNG--VK 220
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELP 363
+ ++G+ L+ V RI + + EVS PS R RKA TT+EL
Sbjct: 221 IDYKEFGIKLNIGAKVNDKKRIRIMLNEEVSSIGKSFNVTGGDSYPSLRTRKAATTLELG 280
Query: 364 SGGTIVLAGLLKDDIQQLKEG 384
G + +L GL+ + ++ +
Sbjct: 281 DGESFILGGLISSNERESLKK 301
>gi|240079992|ref|ZP_04724535.1| PilQ [Neisseria gonorrhoeae FA19]
gi|268596134|ref|ZP_06130301.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae FA19]
gi|268549922|gb|EEZ44941.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
gonorrhoeae FA19]
Length = 731
Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 101/259 (38%), Gaps = 22/259 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFRG 524
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ S+ + + L A E + +TLA P + + +
Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI- 341
A SG + + ++S G +T+ + L TP + G+I + ++ P
Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ +++ +PLL IP++G LF+
Sbjct: 645 ASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704
Query: 402 RFNREETEIFIAATPFLVK 420
+ E+ I TP ++
Sbjct: 705 GKKTDRRELLIFITPRIID 723
>gi|213622639|ref|ZP_03375422.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 250
Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats.
Identities = 64/248 (25%), Positives = 110/248 (44%), Gaps = 6/248 (2%)
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
+ K ++ +++ QV L I + L+++G + ++ ++ +
Sbjct: 1 GPGGAGKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSS 59
Query: 237 KFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
V G ++ + L ALE+ + +A P L A Q AS G +
Sbjct: 60 DLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEI 119
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSY 351
Y+ S +GATSV + + + TPTVL GRI L++ V V+ G++ +
Sbjct: 120 PYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAI 179
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+
Sbjct: 180 DKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELV 239
Query: 412 IAATPFLV 419
+ TP LV
Sbjct: 240 VFITPRLV 247
>gi|320186741|gb|EFW61464.1| Type IV pilus biogenesis protein PilQ [Shigella flexneri CDC
796-83]
Length = 386
Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + ++ + + +I ++ + + +
Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T N+ A S+ ++ + +++ QV L I + L+++G + ++ +
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184
Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G V G ++ + L ALE+ + +A P L A
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQV 304
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364
Query: 401 SRFNREETEIFIAATPFLV 419
E E+ + TP LV
Sbjct: 365 DGKEYERRELVVFITPRLV 383
>gi|94500410|ref|ZP_01306942.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65]
gi|94427445|gb|EAT12423.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65]
Length = 696
Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats.
Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 33/269 (12%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240
+ +N+L++ + QV ++ I ++ + +G + S + G VS
Sbjct: 428 RAINILDVPVK-QVLIEARIVVASTNVGENLGIRWGGGYGVLDGSDNLTLGGGLDTVSRF 486
Query: 241 ---------------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
F+ D + + L ALE ++
Sbjct: 487 NDGITAGSPVRDISETDSVINFPIAAANASTFAFGLSTDEYVLDLELSALESDGKAEIIS 546
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
+P + GQ+A +G + Y +S++GATS+ + + L TP + RI + +
Sbjct: 547 QPRVITADGQTARIQAGTEIPY-EQASASGATSIVFKEAVLKLEATPQITPDDRILMDLI 605
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
+++ +G +PS + +T V + +G TIVL G+ + + + P +P+
Sbjct: 606 --INKDAVGEIFNSIPSIDTNELETQVLVNNGETIVLGGIFQSEDITQVDKTPFFGDLPV 663
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422
+G LFR + +++E+ I TP LVK V
Sbjct: 664 IGQLFRRTTRTEDKSELLIFITPRLVKDV 692
>gi|294670682|ref|ZP_06735557.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307570|gb|EFE48813.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 711
Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats.
Identities = 49/277 (17%), Positives = 106/277 (38%), Gaps = 41/277 (14%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
+K++ L++ QV ++ I E +Q+G + GS+ S
Sbjct: 430 EKLIAELDVPAR-QVMVEARIVEAEDGFSRQLGVKFGYAGSNGKNSWGSNWANAGANRNS 488
Query: 232 ----------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
+ + ++ L + L A
Sbjct: 489 YVDKQRTLANWSRNPSQDIPALPAWTVDPNVNLPIAAATSSIALVHALSSGALGLELSAQ 548
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
+ ++ ++ P + + A +G + Y+ SSS ++ + + + TP +
Sbjct: 549 QAQNKLKIVSTPRVLTQDRKEAIIEAGTEVPYQEASSSGATST-SFKKAVLGMTVTPNIT 607
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
G+I + I+ + V P ++ +T V + GGT++L G+ +++ +
Sbjct: 608 PDGQIIMDIKINK-DSVNSDCRATEPCINTQRLNTNVMVEDGGTLILGGIYQEENSEGVS 666
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+PLL IP++G LF++ + ++TE+ I TP +V
Sbjct: 667 KVPLLGDIPVVGNLFKSKTRSDKKTELLIFITPRIVD 703
>gi|260599692|ref|YP_003212263.1| outer membrane porin HofQ [Cronobacter turicensis z3032]
gi|260218869|emb|CBA34224.1| Protein transport protein hofQ [Cronobacter turicensis z3032]
Length = 390
Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats.
Identities = 67/333 (20%), Positives = 128/333 (38%), Gaps = 16/333 (4%)
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRR------FIADSNIRVEMVSDTVVLHGMVRTIQ 155
+ + E+ R+ +A + + T + G+
Sbjct: 56 WRKESNILRVYPETWEQQTQAQREAARQQQERSLPLASETVTLRYAEATELAAGLAALGD 115
Query: 156 DSQR----AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
T A ++ + ++I QV L I + + L+
Sbjct: 116 KLMTPRGSITVDKRTNRLLIRDTASALRQVQEWVAKMDIP-VGQVELAAHIVTINQQSLR 174
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATA 268
++G + S + + G +D E L ALE+
Sbjct: 175 ELGVKWSTADAEGATKLYHPTTVSADLAVANATTRLGFNIGRIDGRMLEFELSALEQKQK 234
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+ +A P L A Q AS G + Y+ S +GATSV + + + TPT+ GRI
Sbjct: 235 VEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTIGQGGRI 294
Query: 329 GLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
L+++ + P + G++ + ++ +T VE+ G T+ L G+ + + E +P
Sbjct: 295 RLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGETLALGGIFQQKNKTGNEQVP 354
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+L IP+LG+LFR+ ++E+ E+ + TP ++
Sbjct: 355 VLGNIPLLGSLFRHDGKDKEKRELVVFITPRII 387
>gi|304310058|ref|YP_003809656.1| General secretion pathway D protein, outer membrane secretin [gamma
proteobacterium HdN1]
gi|301795791|emb|CBL43990.1| General secretion pathway D protein, outer membrane secretin [gamma
proteobacterium HdN1]
Length = 721
Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats.
Identities = 69/389 (17%), Positives = 128/389 (32%), Gaps = 46/389 (11%)
Query: 77 ADVVVHSPRTMYLFGKNVGQ-ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
AD V S L G GQ G Q + + + + S
Sbjct: 288 ADAVKISE---VLRGIVTGQATTPTSTTAGGMQTASRTPGSSFGNSSAGLGGNSSMGMSG 344
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGE 193
V + G T + ++ L+ + + ++ L++
Sbjct: 345 AGVSSSTSR--QRGT-STPIQAGNITIQADDTLNALVVRASPSDMGEIRSLIKQLDVR-R 400
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---------- 243
QV ++ I EV +G Q + + ++ G + G
Sbjct: 401 AQVLIEAAIVEVTGSAGNSLGVQWGAANENRVVGGTNFSNVGNSISALLGAALSSSGSDS 460
Query: 244 --------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ + F +L A+ A+ L+ P++ + +
Sbjct: 461 TGTTSSTTTTMPTLSNGITLGGGHRNSAGKVDFGLILQAVNTASNTNVLSTPSIMTLDNE 520
Query: 284 SASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
A G + T + + +V D G+ L P V + I LR+ E S
Sbjct: 521 EAEILVGQNVPFITGNQLSYSGTNPFQTVERKDVGLNLKVIPQVNAGDTISLRVTQEASS 580
Query: 339 PVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
N R +TT+ G IVL GL++D + + +PLL IP++GAL
Sbjct: 581 IADSSNVKTTDVITNKRLINTTILASDGQVIVLGGLMEDTLSDAVQKVPLLGDIPLIGAL 640
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426
FR++ +E+ + + P +++ A +
Sbjct: 641 FRSTSKVQEKRNLLLFLRPTVIRDDAKAE 669
>gi|328471682|gb|EGF42559.1| general secretion pathway protein D [Vibrio parahaemolyticus 10329]
Length = 674
Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats.
Identities = 69/454 (15%), Positives = 153/454 (33%), Gaps = 84/454 (18%)
Query: 49 KISIGLNKVIIL-QVPVDVQDV-LVSDPTKADVVVHSPRT---MYLFGKNVGQAN----- 98
I + + ++ ++ ++ V D V + + + + N
Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKEIELVELRNASAAEMVRIVEALNKTTNQKSTP 220
Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
++ +++ D + + L L +A ++ D V
Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190
VL G+ +Q ++A + + + A+ ++ V++ L+I
Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------------- 219
QV ++ I E+ +G Q
Sbjct: 341 R-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAVIQYGNTGAPIGQVMVGLEEAKDVTK 399
Query: 220 --------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
T + D+ + GG + + ++ A+ +
Sbjct: 400 TESYWNSDTNKWENRQYTEEGDYSTLASALGGVNGAAMSIVMGDWTALISAVASDSNSNI 459
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPG 326
L+ P++T + ASF G + T ++ +V + G+ L P +
Sbjct: 460 LSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGD 519
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
+ L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + +P
Sbjct: 520 SVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVP 578
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
LL IP+LG LF+++ E+ + + P +++
Sbjct: 579 LLGDIPVLGHLFKSTSTQTEKRNLMVFIKPTIIR 612
>gi|307245013|ref|ZP_07527110.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306854178|gb|EFM86386.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 429
Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%)
Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + S K ++ L+ +Q+ ++ I + + L+++G + I ++G K +
Sbjct: 152 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 211
Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + ++ + L ALE+ + +A P L
Sbjct: 212 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 271
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
+ + AS G + Y S ++ + + L TP + + +I L + + P
Sbjct: 272 NKKPASIKQGTEVPYVLYSRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPN 331
Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ + + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF
Sbjct: 332 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 391
Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
+S + E+ I TP++VK +
Sbjct: 392 HSSDKISKRELVIFVTPYIVKNGQPQ 417
>gi|53728904|ref|ZP_00134621.2| COG4796: Type II secretory pathway, component HofQ [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|303250734|ref|ZP_07336930.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|303252023|ref|ZP_07338194.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|302649453|gb|EFL79638.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|302650404|gb|EFL80564.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
Length = 417
Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats.
Identities = 49/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%)
Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + S K ++ L+ +Q+ ++ I + + L+++G + I ++G K +
Sbjct: 140 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 199
Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + ++ + L ALE+ + +A P L
Sbjct: 200 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 259
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
+ + AS G + Y + ++ + + L TP + + +I L + + P
Sbjct: 260 NKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPN 319
Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ + + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF
Sbjct: 320 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 379
Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
+S + E+ I TP++VK +
Sbjct: 380 HSSDKISKRELVIFVTPYIVKNGQPQ 405
>gi|325124244|gb|ADY83767.1| putative general secretion pathway protein [Acinetobacter
calcoaceticus PHEA-2]
Length = 756
Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats.
Identities = 63/267 (23%), Positives = 102/267 (38%), Gaps = 30/267 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L++ QV ++ I EV Q+G Q ++ +SG + G S
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGKDADQLGVQWALGDINSGIGLINFTNAGSSLASL 440
Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278
+ G S + ++ AL+ TA L+ P++
Sbjct: 441 AAGYLTGGASGLGSAIGAGSSIALGKYKEGADGSRQLYGALIQALKENTASNLLSTPSIV 500
Query: 279 AISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ + A G + T S + T+V D GV L P + G + L I
Sbjct: 501 TMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVRLEI 560
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ EVS R T V G T+VL GL+ DD++ ++GIP LS IP
Sbjct: 561 EQEVSNVQASKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGLSSIP 620
Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
LG LFR+ + + + + P +V
Sbjct: 621 YLGRLFRSDTRSNVKRNLLVFIHPTIV 647
>gi|77164279|ref|YP_342804.1| general secretion pathway protein D [Nitrosococcus oceani ATCC
19707]
gi|254435433|ref|ZP_05048940.1| general secretion pathway protein D [Nitrosococcus oceani AFC27]
gi|76882593|gb|ABA57274.1| General secretion pathway protein D [Nitrosococcus oceani ATCC
19707]
gi|207088544|gb|EDZ65816.1| general secretion pathway protein D [Nitrosococcus oceani AFC27]
Length = 833
Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats.
Identities = 71/340 (20%), Positives = 124/340 (36%), Gaps = 28/340 (8%)
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRD 208
+ +D + V + + + +K++ L+ QV ++ TIAEV
Sbjct: 488 AKDDEDKKPEVRVIPDVENNTLLISAPPPVYEKILVALHQLDIPPRQVLVEATIAEVTLT 547
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
Q G + + G + F+ + VL L T
Sbjct: 548 DDLQYGVRWFFENT--GVKDYLGRGALTAAIPGTSTFTYGLFDAAGAARIVLDTLSSQTK 605
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLS 324
++ L+ P L + Q+A G Q +T S T + D GV+L TP V +
Sbjct: 606 VKVLSSPQLLVLDNQTAEIRVGDQIPIQTGSTIGIGGNSTTRIQFRDTGVLLTVTPRVNA 665
Query: 325 PGRIGLRIQTEVSEPVIG------------------VNAGDMPSYRVRKADTTVELPSGG 366
GR+ + + EV++ G+ P++ R + V + SG
Sbjct: 666 GGRVTMELTQEVTDVGGTKLPTSAAPSGDGDDDNNNQTVGNNPTFLQRSFRSVVTVQSGD 725
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
TIVL GL++D+ + G+P L K+P++G LF + ++ TE+ + TP +V+
Sbjct: 726 TIVLGGLIRDNERFSDSGLPFLHKLPLIGPLFGATAKSKSRTELIVLMTPRVVRNQYEAR 785
Query: 427 LSRPDDH--YSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
L + D KE E +
Sbjct: 786 LVTEEFREKLRNASDVAEEMGGIAPIAIPRKENKEKPSPS 825
>gi|251787909|ref|YP_003002630.1| putative outer membrane porin HofQ [Dickeya zeae Ech1591]
gi|247536530|gb|ACT05151.1| type IV pilus secretin PilQ [Dickeya zeae Ech1591]
Length = 433
Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats.
Identities = 75/397 (18%), Positives = 148/397 (37%), Gaps = 40/397 (10%)
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
V VQ VL + AD + + + G ++ L +Q L++ + + +
Sbjct: 40 DVPVQRVLQA---LADHQQLN---LVVAPGVAGNVSLNLQQVPWQQALDIILRMGQLTLE 93
Query: 123 LEMTLRRFIADSNIR---------VEMVSDTVVLHGMVRTIQDSQRAVELSE-TFLSQSG 172
+ ++ D+ ++ + L + T+Q ++ A ++ +
Sbjct: 94 RQDSVMMVYPDTMMKDRQQKQEELAAKQRQQLPLQNVSVTLQYAEAADVVANLQSQRGTL 153
Query: 173 RNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIG 214
+ N + K N L + QV L I + + LK +G
Sbjct: 154 LTERGNVTVDKRTNTLLVRDVGSALEQIRPWIEELDKPLSQVQLAAHIVTISSEHLKALG 213
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRT 271
+ + +F E + L+ + L ALE+ +
Sbjct: 214 VNWGLGDGMATGQALQMNNFNVSLPIESPAINAGFHLAKLNGRLLDLELMALEQENEVEI 273
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+A P L Q+AS G + Y+ S ++G+TS+ + + + TP +L G+I L
Sbjct: 274 IASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPRILHGGQITLN 333
Query: 332 IQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ + P + G++ + ++ T V + G TIVL G+ + Q + +P L
Sbjct: 334 LLISQNMPGRAIKQGENGEILAIDKQEIQTQVTVQDGETIVLGGIFQQQKNQAERQVPGL 393
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+P +GA FR+ E+ I TP L++ +
Sbjct: 394 GALPGIGAWFRSGNRQHTRRELVIFITPTLIQAAKRK 430
>gi|145588279|ref|YP_001154876.1| type II and III secretion system protein [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145046685|gb|ABP33312.1| type II and III secretion system protein [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 353
Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 95/240 (39%), Gaps = 12/240 (5%)
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------SKSFAADFGGKFVS 240
+I Q+ ++ I E +++G + + +G + F
Sbjct: 116 HINSPSQILIEARIVEADERFARELGVKIGQQANLAGSRTDKKISANLDLGGAGLNGFNP 175
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
++ + L ALE + L+ P + A+ G + Y+T S
Sbjct: 176 ATVAATLLSKDASRLLQMELSALESEGQGKILSNPRIMTGDQVKATIEQGTELPYQTTSQ 235
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ + + + L P + G+I + +++ IG+ + + + V
Sbjct: 236 NG--SKLQFRKANLRLEVLPKIHPDGKISML--VGINKDTIGMKTEQGYAIDTKSLSSEV 291
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ +GGT ++ G+ + ++ + IPLL IP+ G LFR+ +++TE+ + TP ++
Sbjct: 292 TVENGGTAIIGGIYQTTEREDEVKIPLLGDIPLFGHLFRHKSKLKDKTELLVFLTPTVLD 351
>gi|224370094|ref|YP_002604258.1| GspD2 [Desulfobacterium autotrophicum HRM2]
gi|223692811|gb|ACN16094.1| GspD2 [Desulfobacterium autotrophicum HRM2]
Length = 761
Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats.
Identities = 61/305 (20%), Positives = 114/305 (37%), Gaps = 18/305 (5%)
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
++ I D + +++ G ++ S + + V+
Sbjct: 437 KKEINDPKTKARPTPNSI--SGS-SSLNTSINIIPDAIRNALIIEATPADYQVVLDVLKR 493
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
L++ QV ++VT+AEV + +G + + + G +F
Sbjct: 494 LDV-LPRQVLIEVTLAEVTLNDSSSLGVEWTFIKDGGSVADGLIQGTLGSTNVLQYNFG- 551
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--- 304
+ + L AL + L+ P++ A + A + T G
Sbjct: 552 ----NTQKWAATLTALASKGDVNILSSPSVLASDNKEAKIDISTEVPVVTTEYKYGTDGD 607
Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADT 358
T++ + GV+L TP + G + + I EVSE V + PS+ R T
Sbjct: 608 DMLATNIQYRNTGVILTVTPHINERGLVSMEINQEVSEQADAVLAGGQEYPSFYKRSVQT 667
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
T+ + TI + GL++ + GIPLL+++P LF + E+ E+ I TP +
Sbjct: 668 TLTVNDNQTIAIGGLMRKKEEDSSAGIPLLNQLPFFKYLFGKTAGGNEKNELIILITPRV 727
Query: 419 VKPVA 423
V +
Sbjct: 728 VSDLD 732
>gi|300690062|ref|YP_003751057.1| general Secretory Pathway protein D, type II secretion system
[Ralstonia solanacearum PSI07]
gi|299077122|emb|CBJ49746.1| General Secretory Pathway protein D, type II secretion system
[Ralstonia solanacearum PSI07]
Length = 805
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 71/323 (21%), Positives = 115/323 (35%), Gaps = 45/323 (13%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
A QV ++ I EV D Q+G Q + +FG
Sbjct: 429 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVIAAT 488
Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
G VS + +L AL ++ L+ P
Sbjct: 489 VGSGGIGSTAAQTALSGITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 548
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
L + + A G T S + T + D G+ L P + G +
Sbjct: 549 LITLDNEEAKILIGQNVPITTGSYAQTGSAASVTPFQTFDRKDVGITLRVKPQITDGGLV 608
Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P
Sbjct: 609 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDAEQKVPG 668
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-FFFN 446
L IP+LGALFR+ R++T + + P++++ A + D+ Y+ D + F
Sbjct: 669 LGDIPVLGALFRSESKQRKKTNLLVFLRPYILR-TAEATGALSDNRYNYMRDTQQGFVSP 727
Query: 447 RVNKIYGPKEASEVEGQNYKGAI 469
V ++ + +
Sbjct: 728 NVLPTTSDRDTPVLPSPDSMRPA 750
>gi|300702828|ref|YP_003744429.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957]
gi|299070490|emb|CBJ41785.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957]
Length = 713
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231
QV ++ I E + +G + ++G +
Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNSYTNVTSPVTTNGTWTTDPAVSL 520
Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
A+ + S+ L ALE + ++ P + A G
Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
+ Y+ +SS GATSV + L TP + G + L +V++ +G + +
Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLD--VDVNKDSVGTQTTNGFA 637
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+
Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697
Query: 411 FIAATPFLV 419
+ TP ++
Sbjct: 698 LVFLTPRVL 706
>gi|73542815|ref|YP_297335.1| type II and III secretion system secretin [Ralstonia eutropha
JMP134]
gi|72120228|gb|AAZ62491.1| type II and III secretion system protein:NolW-like:Secretin/TonB,
short N-terminal [Ralstonia eutropha JMP134]
Length = 706
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 23/257 (8%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------S 222
+ +N ++I QV ++ I E + +G + G S
Sbjct: 447 QGFLNKIDIPVR-QVIIEARIVEATDTFSRNLGVKLGFAGQYNNARVGNTYSNVLPGANS 505
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+GP S A S+ L ALE + ++ P + +
Sbjct: 506 DNGPFLSLPAGAINGTNPANIAVSIFNSAATRFLALELSALEADGKGKIISSPRVVTANN 565
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A G + Y+ +SS GATSV + L TP + G + L +V++ +G
Sbjct: 566 IKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVTPQITPEGNVLLD--VDVNKDSVG 622
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ + + T V + +GGT+V+ G+ + +P L IP+LG LF+N+
Sbjct: 623 IQTTSGFAIDTKHVQTQVLVDNGGTVVIGGIYTQTESTDVDKVPFLGDIPVLGYLFKNNA 682
Query: 403 FNREETEIFIAATPFLV 419
R TE+ + TP ++
Sbjct: 683 KVRNRTELLVFLTPRVL 699
>gi|225077283|ref|ZP_03720482.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens
NRL30031/H210]
gi|224951427|gb|EEG32636.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens
NRL30031/H210]
Length = 710
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 30/279 (10%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSS 223
N+ +K+++ L++ QV ++ I E + +G + GS+
Sbjct: 428 TDNRGVIEKFRKLIDELDVPTR-QVMVEARIVEAEDTFFRNLGVKFGFVGAKGSRAWGSN 486
Query: 224 SGP-------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
+ S + + ++ + + A E
Sbjct: 487 WSNAQTNYSTKFSSDRGDVDYPTWSLEPNVSLPTAAAVNSIALVRAFSSGALGLEISASE 546
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+T++ P + + A SG + Y+ +SS GATS+T + L TP +
Sbjct: 547 EQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEAASS-GATSITFKKAVLGLTVTPNITP 605
Query: 325 PGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
G+I + ++ P V++ + +T + GGT+++ G+ +++
Sbjct: 606 DGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVN 665
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
+P+L IP++G LF++ E+ I TP ++ V
Sbjct: 666 KVPVLGDIPVVGNLFKSRGKRENRRELLIFITPHIMDNV 704
>gi|254429767|ref|ZP_05043474.1| general secretion pathway protein D [Alcanivorax sp. DG881]
gi|196195936|gb|EDX90895.1| general secretion pathway protein D [Alcanivorax sp. DG881]
Length = 694
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 87/458 (18%), Positives = 159/458 (34%), Gaps = 50/458 (10%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
+ L P L + ANA +I+ I + + I L+ V V
Sbjct: 141 LVPVLRPLVPQYGHLAAVGSANALIISDHMDNIRRMEAIIASLDSAESEDVQVIKLKYAF 200
Query: 72 SDPTKADVVVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAHLEMTLR-R 129
+ + +P+T GK G V+ + ++ D + + + + +L
Sbjct: 201 AGDMVKMLESLTPQTGGRRGKTPEGGVTVVADERTNRLIIKGDRVTRQRMVQMIRSLDTE 260
Query: 130 FIADSNIRVE--MVSDTVVLHGMVRTIQDSQRAVEL---SETFLSQSGRNQYANSSSKKV 184
+ ++V D L +++ D + S+T + S N + + +
Sbjct: 261 ETDNGGVQVIRLSHGDAKTLAELLKNFADGASVTKAGGDSKTATAASSNNSKVSIQADES 320
Query: 185 MNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
+N L I Q+ ++ I E+ + K +GFQ+ + SG
Sbjct: 321 LNALVIRAEPSMMRELQSVISQLDVRRAQILIEAAIVEISGEQGKNLGFQYVGGSNESGV 380
Query: 227 SKSFAADFGGKFVSE------------------GGDFSVKGVLDRFSFETVLHALERATA 268
G S + ++ AL ++
Sbjct: 381 GAVNFGGGGLSINSIVQALATDDPSGLSLGDGITAGLGETDSNGDLKWGALVQALSTSSD 440
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLHFTPT 321
+ L+ P++ + + AS G + T S+ T++ D G+ L TP
Sbjct: 441 VNLLSTPSILTLDNEEASIVVGENVPFVTGQSTNTGSGVSNPFTTIQREDVGLTLKVTPH 500
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
V I L ++ E S RK +TV TI L GL+KDDI+
Sbjct: 501 VAGLSTIRLELEQENSAVKDSAGDAVDIVTTTRKLQSTVLADDAETIALGGLIKDDIRVT 560
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+PLL IP LG LFR++ +R ++ + + P ++
Sbjct: 561 VRKVPLLGDIPFLGFLFRSTSKDRVKSNLMVFLKPTIL 598
>gi|152998114|ref|YP_001342949.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
gi|150839038|gb|ABR73014.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
Length = 393
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 5/227 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ + IA+V R Q G S G S ++ +
Sbjct: 168 KQIEISAQIAQVSRTAQSQFGVNWQAK-LSDGVRSSIGGAVDLGALTPTTSLDFSSIGGS 226
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
L +E +++P + G A SG + Y+TV S S+
Sbjct: 227 GLLALTLDMMESEGLANVVSKPKIVTSEGLPARIESGTEVPYQTV--SDDKVSIEFRQAV 284
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
++L TP V G I L + + +G +PS + + T V + + T+VL G+
Sbjct: 285 LMLEVTPFVKDSGHILL--SLTIHQDSVGDLVNGVPSLKTNRLKTQVVVKNQETLVLGGV 342
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+++ + + +P S IP LG LF+ +E+ E+ + TP L++
Sbjct: 343 FREERFESESRVPFFSDIPWLGELFKRQSEQQEKVELLVFITPKLLQ 389
>gi|330875847|gb|EGH09996.1| general secretion pathway protein D [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 775
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 62/307 (20%), Positives = 110/307 (35%), Gaps = 21/307 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVR 206
G + + + ++ S + + K++ + + QV ++ I EV
Sbjct: 455 GSNASSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 514
Query: 207 RDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
+G Q S T + + G + + + +
Sbjct: 515 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 574
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDY 312
L ALE + L+ P+L ++ Q A G S +T ++ V
Sbjct: 575 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 634
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIV 369
GV+L P + G + + IQ +VS N P R T V SG T++
Sbjct: 635 GVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRSVSTQVAAQSGQTVL 694
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + +
Sbjct: 695 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLITPRVI--TSSSQARQ 752
Query: 430 PDDHYSV 436
D Y
Sbjct: 753 VTDDYRQ 759
>gi|121997138|ref|YP_001001925.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila
SL1]
gi|121588543|gb|ABM61123.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila
SL1]
Length = 538
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 87/461 (18%), Positives = 157/461 (34%), Gaps = 69/461 (14%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKI---------SIGLNKVIILQVPVDVQD 68
+ P + +I+ +G + ++ ++ + ++ + ++D
Sbjct: 65 ALGAPGLGDPLALQPEDPRFDITADGVGAREFFHGLVEDTPYNVVVHPDLEGELSLTLRD 124
Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK-QMLNLDILIERDIAHLEMTL 127
V V P D V R +Y + + +++ + ++ +LD L H +
Sbjct: 125 VSV--PEVMDTV----REIYGYEYKQARTGFLILPARPRAEVFHLDYLNVHRSGHSGTRV 178
Query: 128 RRFIADSNIRVEMVSDTVVLH--GMVRTIQDSQRAVELSETFLSQSGRNQYANSSS---- 181
I E D V+ + E + S
Sbjct: 179 TS----GEITGEDDGDGVIGSRVDTASNSDLWGQVEETVSRMIDDDDTASVVASPQAGTL 234
Query: 182 ------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
+ ++ L + QV L+ I EV Q G G G +
Sbjct: 235 AVRGMPESLRRVEAFVDRLQGSLNRQVILEARILEVELGDDFQAGISWESLGRHDGQALE 294
Query: 230 FAADFGGKF-VSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQS 284
+ G +S G F++ + FE L ALE+ ++ L+ P ++ ++ Q
Sbjct: 295 GSFRPGDNLELSSAGVFNIGITRGQDGQRGFFEGFLRALEQQGDVQVLSTPQVSTLNNQK 354
Query: 285 ASFTSGGQHLYKTVSSSTGAT---------------SVTTHDYGVVLHFTPTVLSPGRIG 329
A +G Y+T S T G+ L TP + G I
Sbjct: 355 AVIKAGTDSFYQTDFSINYRTVEVGGQTTTQPELDPDFEPFFSGIALDVTPQIEESGWIN 414
Query: 330 LRIQTEVSEPVI------GVNAGDMPSYR-----VRKADTTVELPSGGTIVLAGLLKDDI 378
L +Q V+E D + VR++D+ V SG IV+ GL+++
Sbjct: 415 LHVQPSVTEVRERERTLRTGRGDDEVRFSLAESDVRQSDSIVRARSGEMIVIGGLIEERE 474
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
QQ +PLL ++P+LG LF R + E+ I P +V
Sbjct: 475 QQETSRVPLLGRVPLLGWLFTQERQESSKYELVILLRPRVV 515
>gi|299065327|emb|CBJ36496.1| General Secretory Pathway protein D, type II secretion system
[Ralstonia solanacearum CMR15]
Length = 805
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 70/294 (23%), Positives = 109/294 (37%), Gaps = 44/294 (14%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
A QV ++ I EV D Q+G Q + +FG
Sbjct: 429 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVIAAT 488
Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
G VS + +L AL ++ L+ P
Sbjct: 489 VGSGGIGSTAAQTALSSLTGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 548
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
L + + A G T S + T + D G+ L P + G +
Sbjct: 549 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGTV 608
Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P
Sbjct: 609 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVIANDGQVIVLGGLLEDNYQDSEQKVPG 668
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
L IP+LGALFR+ R++T + + P++++ A + D+ Y DA+
Sbjct: 669 LGDIPVLGALFRSESKTRKKTNLLVFLRPYILR-TAEATGALSDNRYGYMRDAQ 721
>gi|157372484|ref|YP_001480473.1| general secretion pathway protein D [Serratia proteamaculans 568]
gi|157324248|gb|ABV43345.1| general secretion pathway protein D [Serratia proteamaculans 568]
Length = 660
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 63/320 (19%), Positives = 119/320 (37%), Gaps = 22/320 (6%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTV-VLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
L L A+ + V + V V+ MV + A+ +
Sbjct: 292 YAKAQGLLEVLSGVSANLQDEKKTVGNNVSVMKNMVIKADEQTNALII--------NATP 343
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
S+ +KV+ L+I QV ++ I E++ +G Q + + A
Sbjct: 344 DVMSNLEKVIEQLDIR-RAQVLVEAVIVEMQNADGLNLGIQWANRYGGGTQFGNAQAQIA 402
Query: 236 GKFVSEG-----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
F + ++ +L A+ + LA P++ + + A F+ G
Sbjct: 403 PGFKGGMTEVFKNANGLVTGFYSGNWAGLLTAISNQSQNNILATPSIMTLDNEDAEFSVG 462
Query: 291 GQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA- 345
+T +S +V G+ L P + + L+I+ EVS +
Sbjct: 463 QDVPILTGSQTTNSDNVFNTVARKTVGIKLKVKPQINKGQSVLLQIEQEVSSVAENSSVD 522
Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
++ +R + TV + SG T+V+ GLL K +P L +IP+LGALFR++
Sbjct: 523 KDNLGATFNIRTVNNTVLVESGETVVVGGLLDKSQSDSKSAVPFLERIPLLGALFRSTSH 582
Query: 404 NREETEIFIAATPFLVKPVA 423
+ + + P +++
Sbjct: 583 KESKRNLILFIRPTVIRSTE 602
>gi|83748197|ref|ZP_00945224.1| PilQ [Ralstonia solanacearum UW551]
gi|207744528|ref|YP_002260920.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609]
gi|83725165|gb|EAP72316.1| PilQ [Ralstonia solanacearum UW551]
gi|206595934|emb|CAQ62861.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609]
Length = 713
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231
QV ++ I E + +G + S+G
Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFAAKSNGSGIGNTYSNVVSPVTTNGTWDNSSALSL 520
Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
A+ + S+ L ALE + ++ P + A G
Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
+ Y+ +SS GATSV + L TP + G + L +V++ +G + +
Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLD--VDVNKDSVGTQTTNGFA 637
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+
Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697
Query: 411 FIAATPFLV 419
+ TP ++
Sbjct: 698 LVFLTPRVL 706
>gi|207721850|ref|YP_002252288.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2]
gi|206587017|emb|CAQ17601.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2]
Length = 713
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231
QV ++ I E + +G + ++G +
Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNSYTNVTSPITTNGTWTTDPAVSL 520
Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
A+ + S+ L ALE + ++ P + A G
Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
+ Y+ +SS GATSV + L TP + G + L +V++ +G + +
Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLD--VDVNKDSVGTQTTNGFA 637
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+
Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697
Query: 411 FIAATPFLV 419
+ TP ++
Sbjct: 698 LVFLTPRVL 706
>gi|194290974|ref|YP_002006881.1| fimbrial type IV assembly protein pilq precursor [Cupriavidus
taiwanensis LMG 19424]
gi|193224809|emb|CAQ70820.1| Fimbrial type IV assembly protein pilQ precursor [Cupriavidus
taiwanensis LMG 19424]
Length = 710
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 22/245 (8%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-------------------SSSGPSKSFAADF 234
QV ++ I E + +G + G S +GP S A
Sbjct: 462 RQVIIEARIVEATDTFSRNLGVKLGFAGQYNNARVGNTYNNVLPGATSDNGPFLSLPAGS 521
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
S+ L ALE + ++ P + + A G +
Sbjct: 522 INGTNPANIAVSLFNSAATRFLALELSALEADGKGKIISSPRVVTANNIKALIEQGTELP 581
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
Y+ +SS GATSV + L TP + G + L +V++ +G+ + +
Sbjct: 582 YQAATSS-GATSVQFRKANLKLEVTPQITPEGNVLLD--VDVNKDSVGIQTTSGFAIDTK 638
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T V + +GGT+V+ G+ + +PLL IP+LG LF+N+ R TE+ +
Sbjct: 639 HVQTQVLVENGGTVVIGGIYTQTESTDVDKVPLLGDIPVLGYLFKNNAKVRNRTELLVFL 698
Query: 415 TPFLV 419
TP ++
Sbjct: 699 TPRIL 703
>gi|134302144|ref|YP_001122113.1| type IV pilus secretin/type II and III secretion system protein
[Francisella tularensis subsp. tularensis WY96-3418]
gi|134049921|gb|ABO46992.1| type IV pilus secretin/type II and III secretion system protein
[Francisella tularensis subsp. tularensis WY96-3418]
Length = 590
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/416 (17%), Positives = 155/416 (37%), Gaps = 34/416 (8%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
P A + + + +++ ++ + + +D+++V P ++V+ S
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
L K + + + L++ +R + + + FI + +
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292
Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
+ +G + + + S A + T + K+V+N ++I DQV ++
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTKEKLQRIKEVVNEIDIPN-DQVLIEA 349
Query: 201 TIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251
I EV R ++GF + + + G + + + G
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPTPVDTFVGTTAKLAY 409
Query: 252 ---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
E + ALE + +A P L + Q A F G+ + ++++GA +V
Sbjct: 410 TIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVA 468
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELP 363
+ + L TP + G I + I + P + R+ T V
Sbjct: 469 FQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTK 528
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++
Sbjct: 529 DGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 584
>gi|331017211|gb|EGH97267.1| general secretion pathway protein D [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 361
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 61/261 (23%), Positives = 101/261 (38%), Gaps = 19/261 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244
QV ++ I EV+ +G Q S T + + G +
Sbjct: 87 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 146
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298
S + + L ALE + L+ P+L ++ Q A G
Sbjct: 147 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 206
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355
+++T +SV GV+L P + G + + IQ +VS+ G + P R
Sbjct: 207 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 266
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T V SG T++L GL+K D + +P L +IP L LF NS +++ TE+ + T
Sbjct: 267 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 326
Query: 416 PFLVKPVAMRDLSRPDDHYSV 436
P ++ + + D Y
Sbjct: 327 PRVI--TSSSQARQVTDDYRQ 345
>gi|291619222|ref|YP_003521964.1| HofQ [Pantoea ananatis LMG 20103]
gi|291154252|gb|ADD78836.1| HofQ [Pantoea ananatis LMG 20103]
Length = 413
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 7/247 (2%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADFGGKF 238
+ + L++ +QV L I + + L ++G + +++ G
Sbjct: 164 RWIRALDVPL-EQVELAAHIVTISEEHLHELGVNWRLYNEGDVINRALRHPLLDIPLGLN 222
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ + + L ALE+ + +A P L Q+AS G + Y+
Sbjct: 223 SHDVSVGVTLSRIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIKQGTEIPYEVS 282
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI--QTEVSEPVIGVNAGDMPSYRVRKA 356
+ ++GATS+ + + + TP VL GRI L+I V + + S ++
Sbjct: 283 AGNSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDSQVLSIDKQEI 342
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V + G T+ L G+ + + +PLL +P++G+LFR + + E+ I TP
Sbjct: 343 ETQVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQRKRELVIFMTP 402
Query: 417 FLVKPVA 423
LV+ A
Sbjct: 403 RLVREAA 409
>gi|254673580|emb|CBA09077.1| fimbrial assembly protein [Neisseria meningitidis alpha275]
Length = 687
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 422 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 480
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D + S+ + + L A E + +TLA P + + +
Sbjct: 481 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 540
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 541 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 600
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 601 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 660
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 661 GKKTDRRELLIFITPRI 677
>gi|261341890|ref|ZP_05969748.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus
ATCC 35316]
gi|288315792|gb|EFC54730.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus
ATCC 35316]
Length = 403
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 5/231 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GV 250
DQV L I + L+++G + ++ +S G V G
Sbjct: 170 DQVELAAHIVTINEKSLRELGVKWNLAEASEAGRVGEVTALGADLSVANATTHVGFNIGR 229
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+D + L ALE+ + +A P L A Q AS G + Y+ S +GATSV
Sbjct: 230 IDGRLLDLELSALEQKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 289
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
+ + + TP VL GR+ L++ + P V+ G+ + ++ +T VE+ SG T+
Sbjct: 290 EAVLGMEVTPVVLPGGRVRLKLHISENMPGQVLQQADGETLAIDKQEIETQVEVKSGETL 349
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G+ + + +P L +IP LG LFR+ + E E+ + TP LV
Sbjct: 350 ALGGIFSQKNKTGSDSVPGLGRIPWLGQLFRHDGKDNERRELVVFITPRLV 400
>gi|189424703|ref|YP_001951880.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ]
gi|189420962|gb|ACD95360.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ]
Length = 891
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 52/264 (19%), Positives = 102/264 (38%), Gaps = 22/264 (8%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227
+ A +K++ L++ E QV ++ I E + +G I S
Sbjct: 630 KDVKSAVDDMRKILASLDVP-EKQVMIEARIVEASSTFTQSLGVNWGIHYRDGSASIAGI 688
Query: 228 ------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ + S + + L+A A +R ++ P
Sbjct: 689 NSMDTNFGGLASTAPTSSGVSGSPGAAAGISFGTLSSNIKLDLRLNAAVSAGLVRIVSTP 748
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ ++ +SA T G Q Y S++ + + L TP + G + ++I +
Sbjct: 749 RVATLNHKSAKITQGQQIPYTA--STSDKIETKFVEAALALEVTPHINPNGTVVMKIDAK 806
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
P + G+ P+ ++A T + L G T V+ G+ + +G+P L+ +P LG
Sbjct: 807 NDSP---GSTGNPPAINKKQATTEMMLRDGETTVIGGIFVESESNNDDGVPFLADVPWLG 863
Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
LF+++ R E+ I TP ++
Sbjct: 864 GLFKSNETKRNRNELLIFITPRII 887
>gi|3978475|gb|AAC83352.1| outer membrane secretion protein Q [Pseudomonas alcaligenes]
Length = 649
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 82/504 (16%), Positives = 167/504 (33%), Gaps = 69/504 (13%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV-----IILQVPVDVQDVLVS 72
P L + +NA +I+ I + +++ L+ ++ +
Sbjct: 157 PLVPQNGHLAAVAASNALIISDRRANIERIRELIAELDAQGGGDYNVINLQHAW------ 210
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL----- 127
D + KN VI + +L + +A+L +L
Sbjct: 211 ---VLDAAEALNNAVMRNEKNSAGTRVIADARTNRLILLGPPAARQRLANLARSLDIPST 267
Query: 128 --------RRFIADSNIRVEMVSD-----TVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
R +D+ E + D G Q + ++ L+
Sbjct: 268 RSANARVIRLRHSDAKSLAETLGDISEGLKTAEGGGEAASSKPQNILIRADESLNALVLL 327
Query: 175 QYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
++ + ++++ L++ QV ++ I E+ DI +G Q ++
Sbjct: 328 ADPDTVATLEEIVRNLDVP-RAQVMVEAAIVEISGDISDALGVQWAVDARGG-TGGLGGV 385
Query: 233 DFGGKFVSEGGDF----------------SVKGVLDRFSFETVLHALERATAIRTLAEPT 276
+FG +S G + +F ++ AL + L+ P+
Sbjct: 386 NFGNTGLSVGTVLKAIQNEEIPDDLTLPDGAIIGIGTENFGALITALSANSKSNLLSTPS 445
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIG 329
L + Q A G ++T S + T++ D GV L TP + +
Sbjct: 446 LLTLDNQEAEILVGQNVPFQTGSYTTDASGANNPFTTIEREDIGVTLKVTPHINDGATLR 505
Query: 330 LRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
L ++ E+S R + + G IVL GL++DD+ +P
Sbjct: 506 LEVEQEISSIAPSAGVNAQAVDLVTNKRSIKSVILADDGQVIVLGGLIQDDVTSTDSKVP 565
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED------DA 440
LL IP++G LFR+++ + + + P +V+ + YS D
Sbjct: 566 LLGDIPLIGRLFRSTKDTHVKRNLMVFLRPTIVRD-RAGMAALSGKKYSDISVLGADEDG 624
Query: 441 KAFFFNRVNKIYGPKEASEVEGQN 464
+ +++ A V+ ++
Sbjct: 625 HSSLPGSAERLFDKPGAGAVDLRD 648
>gi|300690208|ref|YP_003751203.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07]
gi|299077268|emb|CBJ49894.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07]
Length = 717
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 51/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------------------F 230
QV ++ I E + +G + ++G F
Sbjct: 465 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPVTTNGTWDNSPALSF 524
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
A+ + S+ L ALE + ++ P + A G
Sbjct: 525 PANGINGVSAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 584
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
+ Y+ +SS GATSV + L TP + G + L +V++ +G + +
Sbjct: 585 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLD--VDVNKDSVGTQTTNGFA 641
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+
Sbjct: 642 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 701
Query: 411 FIAATPFLV 419
+ TP ++
Sbjct: 702 LVFLTPRVL 710
>gi|269959419|ref|ZP_06173802.1| general secretion pathway protein D [Vibrio harveyi 1DA3]
gi|269835856|gb|EEZ89932.1| general secretion pathway protein D [Vibrio harveyi 1DA3]
Length = 675
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 68/453 (15%), Positives = 156/453 (34%), Gaps = 83/453 (18%)
Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98
I + + ++ ++ ++ V + ++ S M + +
Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKEIEVVELRNASASEMVRIVDALNKTTNQKSTP 220
Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
++ +++ D + + L L +A ++ D V
Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190
VL G+ +Q ++A + + + A+ ++ V++ L+I
Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSF------------- 230
QV ++ I E+ +G Q I ++G
Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGNLETGAVIQYGNTGAQIGNVMVGLEEAKDQTR 399
Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
+ D+ + GG + + ++ A+ + L
Sbjct: 400 TEYYTNSDGERTPYDVTESGDYSTLAAALGGVNGAAMSIMMGDWTALITAVSSDSNSNIL 459
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
+ P++T + ASF G + T ++ +V + G+ L P +
Sbjct: 460 SSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDS 519
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + +PL
Sbjct: 520 VQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPL 578
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L IP++G LF+++ E+ + + P +++
Sbjct: 579 LGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIR 611
>gi|86146572|ref|ZP_01064894.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222]
gi|85835629|gb|EAQ53765.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222]
Length = 674
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 54/314 (17%), Positives = 116/314 (36%), Gaps = 48/314 (15%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
+ + + + + + + ++ + V+ L+I QV ++ I E+
Sbjct: 301 SSSQRNQVMISAHSDTNSLVITAQPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDG 359
Query: 211 KQIGFQHS-------ITGSSSGPSKSFA-------------------------------- 231
+G Q I S++G S
Sbjct: 360 VNLGVQWGNLETGAMIQYSNTGASIGGVMVGLEEAKDSTTTKAVYDKDNNFLRNETTTEK 419
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
D+ + G + + ++ A+ + L+ P++T + ASF G
Sbjct: 420 GDYSTLASALSGVNGAAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVGE 479
Query: 292 QHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
+ T S + +V + G+ L P + + L+I+ EVS + A
Sbjct: 480 EVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSNVLGANGAV 539
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
D+ + R+ +T+V + G +VL GL+ + + + +P L IP+LG LF+++ E
Sbjct: 540 DV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVE 598
Query: 407 ETEIFIAATPFLVK 420
+ + + P +++
Sbjct: 599 KKNLMVFIKPTIIR 612
>gi|312958540|ref|ZP_07773060.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6]
gi|311287083|gb|EFQ65644.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6]
Length = 460
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 68/464 (14%), Positives = 157/464 (33%), Gaps = 63/464 (13%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
++RTF + + +A P + + ++ LN +++
Sbjct: 1 MKRTFLSFGVALWIAFTAPMAAAVPNRVDLIQLPAPGRAMSDGYAGDTLNLNFQN-IELR 59
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+Q + A + + + + G + L Q L+L + + +
Sbjct: 60 AVLQQIA----DVAGLNLVASDDV------QGTITLRLKDVPWDQALDLVLQAKGLDKRV 109
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR---------AVELSETFLSQSGRN 174
+ + + + T+ + + +R A +L++ F S +G
Sbjct: 110 KAGVLLVAPAEELAARELL-TLEARKQMADLAPLRRELLQVNYAKAADLAKLFQSMTGFE 168
Query: 175 QYANSSSK-----------------------KVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+ +++ L+I QV ++ I E D K
Sbjct: 169 GATDERGSVAVDDRTNNIIAYQTSERLEELRRIVAQLDIPVR-QVMIEARIVEANVDYDK 227
Query: 212 QIGFQHSITGSSSGPSKSFAADFGG-----------------KFVSEGGDFSVKGVLDRF 254
+G + + + ++ + + D
Sbjct: 228 SLGARWGGAINRGNWAAGGIRKPVPDGEAPPENLPSSPFVDLGSLTGTSGLGIAYITDNL 287
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
+ L A+E+ +++P + ++A G + Y+ +S GATSV+ + +
Sbjct: 288 LLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQES-TSQGATSVSFKEASL 346
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
L TP + + + ++ EP D+P + + + V + G TIV+ G+
Sbjct: 347 SLEVTPQITPDNHVIMVVKVTKDEPDYLNKLNDVPPIKKNEVNAKVLVKDGETIVIGGVF 406
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ ++ + +P L +P LG LFR +++E+ + TP +
Sbjct: 407 SNTQSKVVDKVPFLGDVPYLGRLFRRDVLAEKKSELLVFLTPRI 450
>gi|323939252|gb|EGB35464.1| general secretion pathway protein D [Escherichia coli E482]
Length = 504
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 156 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 214
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDR--- 253
+G Q + + + G S + + +
Sbjct: 215 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 274
Query: 254 ----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 275 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 334
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 335 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 394
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++
Sbjct: 395 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 449
>gi|294788170|ref|ZP_06753413.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453]
gi|294483601|gb|EFG31285.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453]
Length = 700
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 66/419 (15%), Positives = 146/419 (34%), Gaps = 39/419 (9%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPRTMYLF 90
+ + K I+I + + ++ + ++DV P +A +V S R + +
Sbjct: 281 FQDIEVRTVLQILAKESGINIVASDSVQGKMTLSLKDV----PWDQALDLVLSARDLVM- 335
Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--- 147
+ G IL + K+ D + L + + VE + D + L
Sbjct: 336 -EKNGNIINILTNAESKKRRLEDAEDRAKLDDLIPLVSQTFQLKYKNVEELRDVLKLDQR 394
Query: 148 ---HGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
G ++ + + + T ++++ L++ QV ++ I
Sbjct: 395 GNDSGTSGSLLTKRGSARVDPATNTLIVKDTSTVIQEFQRLIEELDVPAR-QVMVETRIV 453
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----------------------FVSE 241
E + + +G + + + + +
Sbjct: 454 EADVSVGRDLGIKLGYARAGRTGVGNTYNNALNNRNVGVGASTGVIDISPNINLPTVATA 513
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ + L A+E +T++ P + + A G Q Y+ +
Sbjct: 514 TTALGLIRSFGSSALSLELSAMEEENRSKTISSPRVLTQDRKEAEIRQGTQIPYQ-TRDA 572
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTV 360
G+ + D + + TP + I L + +NA P+ V++ T
Sbjct: 573 DGSYTTAFKDAVLSMKVTPRITPDNNIILDVTINKDNVDNTRINADGEPAISVKQVKTQA 632
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +GGT+V+ G+ ++ I +PLL +P+LG LF++ N + +E+ TP ++
Sbjct: 633 MVENGGTLVVGGVYQEQISNNISKVPLLGDVPVLGNLFKSKSRNHQRSEVLFFITPRII 691
>gi|262402018|ref|ZP_06078583.1| type II secretory pathway component PulD [Vibrio sp. RC586]
gi|262351990|gb|EEZ01121.1| type II secretory pathway component PulD [Vibrio sp. RC586]
Length = 675
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 50/321 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
G + + V ++ + S +V+ L+I QV ++ I E
Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVITAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352
Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231
+ +G Q I ++G S
Sbjct: 353 MSEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKKPIRNSDTGEIKY 412
Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D+ + G + + +++A+ + L+ P++T +
Sbjct: 413 YEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGE 472
Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
ASF G + T ++ +V + G+ L P + + L I+ EVS
Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR
Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLIDERAIESESKVPLLGDIPVLGQLFR 591
Query: 400 NSRFNREETEIFIAATPFLVK 420
++ E+ + + P +++
Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612
>gi|269103695|ref|ZP_06156392.1| putative type II secretory pathway component EpsD [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163593|gb|EEZ42089.1| putative type II secretory pathway component EpsD [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 579
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 58/317 (18%), Positives = 117/317 (36%), Gaps = 47/317 (14%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEV 205
G ++ S+ V ++ + S +K +++ L+I QV ++ I EV
Sbjct: 204 GQAKSASSSKNEVSINADKGTNSLVISAPPDLMRKLKDIISQLDIR-RAQVHIEAMIVEV 262
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------------- 240
+ G Q + G V+
Sbjct: 263 QEGDGLNFGVQWGSEDGGIIQYGNSPVGIGSYMVAKKEAEDQTKVETRYDSDGKPYTYET 322
Query: 241 ------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
GG + + +++A+ L+ P++T + Q A +
Sbjct: 323 KESGDYSSLAKLLGGVNGTAVAIAMGDWTALVNAVRTNRNANVLSTPSITVLDNQEAELS 382
Query: 289 SGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
G + +T ++ T+V D G+ L TP + + L I+ VS+
Sbjct: 383 VGQEVPVQTGSTSSSNNDNPFTTVERKDVGIQLTVTPQINEGDSVKLDIKQVVSQVADAQ 442
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
A D+ + R+ +T V + G I L G++++ + + +P+L IP+LG+LFR++
Sbjct: 443 GAVDI-RFDKRELNTAVLVKDGSMIALGGMMQEKALESESKVPILGDIPVLGSLFRSTNN 501
Query: 404 NREETEIFIAATPFLVK 420
+T + I P +++
Sbjct: 502 ETVKTNLLIFIKPTIIR 518
>gi|52841166|ref|YP_094965.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|52628277|gb|AAU27018.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 698
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 61/312 (19%), Positives = 117/312 (37%), Gaps = 30/312 (9%)
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAG 192
I +D VL + S R + + + +++ L+I
Sbjct: 372 QINYAKAADIAVLIKDKQNSLLSDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPV 431
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------- 233
+ QV ++ I EV +D + IG + ++ + A+
Sbjct: 432 K-QVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLN 490
Query: 234 ------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
++ + D + L ALE ++ P L + Q A+
Sbjct: 491 LDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAV 549
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G+ + ++S+GAT+V + L TP + G+I + +Q P
Sbjct: 550 IESGEEIPYQEATSSGATAVAFKKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLG 608
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P+ ++ T V + +G TIVL G+ K D ++ IP ++P++G LF N + +
Sbjct: 609 VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKN 668
Query: 408 TEIFIAATPFLV 419
E+ I TP ++
Sbjct: 669 EELLIFITPRII 680
>gi|160896756|ref|YP_001562338.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
gi|160362340|gb|ABX33953.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
Length = 819
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 108/242 (44%), Gaps = 14/242 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------FVSEGGD 244
Q+ ++ +I EV + Q G Q + +G S + + G
Sbjct: 536 PTQILIEASIVEVTLNDGLQYGLQWAFSGDVGNNGYSGSGLISTDGKRTTADIAAAIGQG 595
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTV 298
F+ + + L+AL T ++ +A P+L + +A+ + G Q Y T
Sbjct: 596 FNYTLKNSAGTIKAALNALSSKTNVKVVASPSLMVLDNHTAAISVGTQQPYRSGEISTTT 655
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
S+ A S D GV L TP+V + + + + V++ ++ R+ +
Sbjct: 656 VGSSNAVSYQYKDTGVNLQVTPSVNAGNIVTMTVNQMVTDVGAKDEITQQVTFLQRQLSS 715
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V + SG +IV+ GL++++ + GIP+L ++P++G LF ++ + TE+ + TP +
Sbjct: 716 RVSVRSGESIVMGGLIQENTSDGRSGIPVLHELPVVGNLFGSTNNSMRRTELLVIITPRV 775
Query: 419 VK 420
V+
Sbjct: 776 VR 777
>gi|84386329|ref|ZP_00989357.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01]
gi|84378753|gb|EAP95608.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01]
Length = 674
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 54/314 (17%), Positives = 116/314 (36%), Gaps = 48/314 (15%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
+ + + + + + + ++ + V+ L+I QV ++ I E+
Sbjct: 301 SSSQRNQVMISAHSDTNSLVITAQPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDG 359
Query: 211 KQIGFQHS-------ITGSSSGPSKSFA-------------------------------- 231
+G Q I S++G S
Sbjct: 360 VNLGVQWGNLETGAMIQYSNTGASIGGVMVGLEEAKDSETTTAVYDSDGKFLRNETTTEE 419
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
D+ + G + + ++ A+ + L+ P++T + ASF G
Sbjct: 420 GDYSTLASALSGVNGAAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVGE 479
Query: 292 QHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
+ T S+ +V + G+ L P + + L+I+ EVS + A
Sbjct: 480 EVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSNVLGANGAV 539
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
D+ + R+ +T+V + G +VL GL+ + + + +P L IP+LG LF+++ E
Sbjct: 540 DV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVE 598
Query: 407 ETEIFIAATPFLVK 420
+ + + P +++
Sbjct: 599 KKNLMVFIKPTIIR 612
>gi|257464993|ref|ZP_05629364.1| type II secretory pathway, component HofQ [Actinobacillus minor
202]
gi|257450653|gb|EEV24696.1| type II secretory pathway, component HofQ [Actinobacillus minor
202]
Length = 442
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 48/252 (19%), Positives = 97/252 (38%), Gaps = 16/252 (6%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPSKSFAADFGGKFVSEG 242
+Q+ ++ I + + L ++G + + G+ G + F G
Sbjct: 181 TEQIAIEARIVTISSENLHELGVRWGMLSPNTSHSRLGGTLEGNGVDSTKNLNVNFPVSG 240
Query: 243 GDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G +V ++ + L ALE+ ++ +A P L + + AS G + Y
Sbjct: 241 GASAVLQVASINSKVLDLELSALEQENSVEIIASPRLLTTNKKLASIKQGTEIPYAIYDR 300
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356
+ V + + L TP + +I + + + V + S ++
Sbjct: 301 KSETYDVEFKEAVLGLQVTPHISKDNQILMDLVVTQNSQGQSVVSSTSGNAAVSIDKQEL 360
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T V G TIVL G+ + + + +P+L IP L LF + + E+ I TP
Sbjct: 361 NTQVFAKHGETIVLGGIFQHLKTKDSDRVPVLGSIPFLKHLFSYQKDQISKRELVIFVTP 420
Query: 417 FLVKPVAMRDLS 428
++++ + L
Sbjct: 421 YIIQANDINALP 432
>gi|261381191|ref|ZP_05985764.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703]
gi|284795810|gb|EFC51157.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703]
Length = 710
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 30/279 (10%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSS 223
N+ +K+++ L++ QV ++ I E + +G + GS+
Sbjct: 428 TDNRGVIEKFRKLIDELDVPTR-QVMVEARIVEAEDTFFRNLGVKFGSGGASGRNAWGSN 486
Query: 224 SGP-------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
+ S + + ++ + + A E
Sbjct: 487 WSNAQTNYNTNASFNRGDVRYPTWSLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASE 546
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+T++ P + + A SG + Y+ SS+GATS+T + L TP +
Sbjct: 547 EQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEA-SSSGATSITFKKAVLGLTVTPNITP 605
Query: 325 PGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
G+I + ++ P V++ + +T + GGT+++ G+ +++
Sbjct: 606 DGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVN 665
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
+P+L IP++G LF++ E+ I TP ++ V
Sbjct: 666 KVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNV 704
>gi|291285874|ref|YP_003502691.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615]
gi|290765747|gb|ADD59707.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615]
Length = 656
Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats.
Identities = 56/308 (18%), Positives = 115/308 (37%), Gaps = 34/308 (11%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192
VL G+ I++ + +E + +++ + V++ L+I
Sbjct: 285 VLTGISSNIENDAKKSSSTEALRKGVTIKSHEQTNALILTGAPDVIRDLENVISQLDIRR 344
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------------KFV 239
QV ++ IAEV+ +G Q S S +
Sbjct: 345 P-QVLVEAIIAEVQDADGLNLGIQWVNKHSGVTQFTSTGLPITTMVQTRQSDISDSDQSN 403
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ + + ++ +L AL ++ LA P++ + A+F G + + S
Sbjct: 404 TLSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGS 463
Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYR 352
+T +V G+ L P + + L I+ EVS + + ++
Sbjct: 464 QTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFN 523
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R + + +G T+V+ GLL I+ + +PLL IP+LG LF + + + + +
Sbjct: 524 TRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLML 583
Query: 413 AATPFLVK 420
P +++
Sbjct: 584 FIRPTIIR 591
>gi|220931453|ref|YP_002508361.1| type II and III secretion system protein [Halothermothrix orenii H
168]
gi|219992763|gb|ACL69366.1| type II and III secretion system protein [Halothermothrix orenii H
168]
Length = 881
Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/326 (19%), Positives = 126/326 (38%), Gaps = 52/326 (15%)
Query: 106 GKQMLNLDILIER-DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
G+++ + ++ ++ +L ++ D ++ + +++ G + Q V L
Sbjct: 300 GEEIDTEVVRVDYGNLDNLISVIQGLFPDIRLQSNPLKKEIIIKG---NTSEVQEIVSL- 355
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+N L+I QV ++ E+ + + + G + +++
Sbjct: 356 --------------------VNSLDIP-RRQVIIEARFEEISANKISEFGMRPNLSEIQF 394
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
++ + L LE LA P L ++G++
Sbjct: 395 IFDEATRELKSMNIT----------------WPEYLRFLEEEGQANMLANPRLLTLNGEN 438
Query: 285 ASFTSGGQHL---------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
A G + + + A S D G+ L FTP + G I + + E
Sbjct: 439 ARLLIGDKVPVKIEETSGSSEESEGESNAVSYEYIDVGISLEFTPWITEDGYIIMDVAPE 498
Query: 336 VSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
VS +P + R+A T + L G T + GL+++D + +PLL IP+L
Sbjct: 499 VSSLGSPMGGGESIPPIKTREARTKIRLKDGQTFAIGGLIREDELESIAKVPLLGDIPLL 558
Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
G LFR S+ ++ +TE+ I TP +VK
Sbjct: 559 GTLFRRSQTDKVKTEVVIFITPHIVK 584
>gi|54293906|ref|YP_126321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
str. Lens]
gi|53753738|emb|CAH15196.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
str. Lens]
Length = 698
Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats.
Identities = 57/290 (19%), Positives = 111/290 (38%), Gaps = 28/290 (9%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
D + + T ++++ L+I + QV ++ I EV +D + IG
Sbjct: 394 SDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPVK-QVLIEARIVEVTKDFSQDIG 452
Query: 215 FQHSITGSSSGPSKSFAAD-------------------------FGGKFVSEGGDFSVKG 249
+ ++ + A+ ++
Sbjct: 453 IRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLNLDLAAAPLTGATPASVGIALAK 512
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
+ D + L ALE ++ P L + Q A+ G+ + ++S+GAT+V
Sbjct: 513 LNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAVIESGEEIPYQEATSSGATAVAF 571
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ L TP + G+I + +Q P +P+ ++ T V + +G TIV
Sbjct: 572 KKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLGVPAIITKEIQTNVLVNNGQTIV 630
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G+ K D ++ IP ++P++G LF N + + E+ I TP ++
Sbjct: 631 LGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680
>gi|319639388|ref|ZP_07994138.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
mucosa C102]
gi|317399283|gb|EFV79954.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
mucosa C102]
Length = 710
Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats.
Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 30/279 (10%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSS 223
N+ +K+++ L++ QV ++ I E + +G + GS+
Sbjct: 428 TDNRGVIEKFRKLIDELDVPTR-QVMVEARIVEAEDTFFRNLGVKFGSGGASGRTAWGSN 486
Query: 224 SGP-------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
+ S + + ++ + + A E
Sbjct: 487 WSNAQANHNTNASFNRGDVGYPTWSLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASE 546
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+T++ P + + A SG + Y+ SS+GATS+T + L TP +
Sbjct: 547 EQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEA-SSSGATSITFKKAVLGLTVTPNITP 605
Query: 325 PGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
G+I + ++ P V++ + +T + GGT+++ G+ +++
Sbjct: 606 DGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVN 665
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
+P+L IP++G LF++ E+ I TP ++ V
Sbjct: 666 KVPILGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNV 704
>gi|260551051|ref|ZP_05825255.1| type II secretory pathway [Acinetobacter sp. RUH2624]
gi|260405818|gb|EEW99306.1| type II secretory pathway [Acinetobacter sp. RUH2624]
Length = 758
Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats.
Identities = 62/269 (23%), Positives = 101/269 (37%), Gaps = 32/269 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440
Query: 242 GGDFSVKGVLDRFS-------------------------FETVLHALERATAIRTLAEPT 276
+ G S + ++ AL+ T L+ P+
Sbjct: 441 AAGYLSGGTAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + + A G + T S + T+V D GV L P + G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGEGGTVRL 560
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++ EVS R T V G T+VL GL+ DD ++GIP LS
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
IP +G LFR+ + + + + P +V
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649
>gi|218708199|ref|YP_002415820.1| type II secretory pathway subunit EpsD [Vibrio splendidus LGP32]
gi|218321218|emb|CAV17168.1| Type II secretory pathway, component EpsD [Vibrio splendidus LGP32]
Length = 674
Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats.
Identities = 54/314 (17%), Positives = 116/314 (36%), Gaps = 48/314 (15%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
+ + + + + + + ++ + V+ L+I QV ++ I E+
Sbjct: 301 SSSQRNQVMISAHSDTNSLVITAQPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDG 359
Query: 211 KQIGFQHS-------ITGSSSGPSKSFA-------------------------------- 231
+G Q I S++G S
Sbjct: 360 VNLGVQWGNLETGAMIQYSNTGASIGGVMVGLEEAKDKTVDRVVTPSDGSKPYTVKETEK 419
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
D+ + G + + ++ A+ + L+ P++T + ASF G
Sbjct: 420 GDYSTLASALSGVNGAAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVGE 479
Query: 292 QHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
+ T S + +V + G+ L P + + L+I+ EVS + A
Sbjct: 480 EVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSNVLGANGAV 539
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
D+ + R+ +T+V + G +VL GL+ + + + +P L IP+LG LF+++ E
Sbjct: 540 DV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVE 598
Query: 407 ETEIFIAATPFLVK 420
+ + + P +++
Sbjct: 599 KKNLMVFIKPTIIR 612
>gi|148976513|ref|ZP_01813209.1| Type II secretory pathway, component EpsD [Vibrionales bacterium
SWAT-3]
gi|145964089|gb|EDK29346.1| Type II secretory pathway, component EpsD [Vibrionales bacterium
SWAT-3]
Length = 674
Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats.
Identities = 55/314 (17%), Positives = 116/314 (36%), Gaps = 48/314 (15%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
+ + V + + + + ++ + V+ L+I QV ++ I E+
Sbjct: 301 SSSQRDKVVISAHSDTNSLVITAQPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDG 359
Query: 211 KQIGFQHS-------ITGSSSGPSKSFA-------------------------------- 231
+G Q I S++G S
Sbjct: 360 VNLGVQWGNLETGAMIQYSNTGASIGGVMVGLEEAKDTETTTAVYDKNGKFLGNETTTEQ 419
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
D+ + G + + ++ A+ + L+ P++T + ASF G
Sbjct: 420 GDYSTLASALSGVNGAAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVGE 479
Query: 292 QHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
+ T S+ +V + G+ L P + + L+I+ EVS + A
Sbjct: 480 EVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSNVLGANGAV 539
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
D+ + R+ +T+V + G +VL GL+ + + + +P L IP+LG LF+++ E
Sbjct: 540 DV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVE 598
Query: 407 ETEIFIAATPFLVK 420
+ + + P +++
Sbjct: 599 KKNLMVFIKPTIIR 612
>gi|227114133|ref|ZP_03827789.1| general secretion pathway protein D [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 684
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 69/367 (18%), Positives = 133/367 (36%), Gaps = 43/367 (11%)
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRV-----EMVSDTV-VLH 148
ANV+ ++ + + + + L R+ N +V +D V VL
Sbjct: 253 TANVVADERTNSVLVRGEPNSRQRVIDMVKQLDRQQAVQGNTKVIYLKYAKATDLVEVLT 312
Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
G+ +IQ Q+ + +T ++V+ L+I QV
Sbjct: 313 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 371
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240
++ IAEV+ +G Q + + + +
Sbjct: 372 VEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATTA 431
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296
GG + + ++ +L AL + + LA P++ + A+F G + +
Sbjct: 432 LGGFNGIAAGFYQGNWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 491
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRV 353
T S +V G+ L P + + L I+ EVS + ++
Sbjct: 492 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGATFNT 551
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + +
Sbjct: 552 RTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNLMLF 611
Query: 414 ATPFLVK 420
P +++
Sbjct: 612 IRPSIIR 618
>gi|329120652|ref|ZP_08249315.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC
BAA-1200]
gi|327460876|gb|EGF07210.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC
BAA-1200]
Length = 695
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 50/267 (18%), Positives = 106/267 (39%), Gaps = 29/267 (10%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------ 223
+K++ L++ QV ++ I E ++IG + GS+
Sbjct: 426 EKILEELDVPAR-QVMVETRIVEASDGFSREIGVKFGYAGSNGKNSWGSNWANAQANNNT 484
Query: 224 --------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ + + + + ++ L + L A + + ++ P
Sbjct: 485 NVNASQNNTNRTWTLNPNINLPTTAATSSVALVHALSSGALALELSAQQAQNKAKVISSP 544
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ + A SG + Y+ SSS ++ + + + TP + G+I + I+
Sbjct: 545 RVLTQDRKEAVIESGTEVPYQEASSSGATST-SFKKAVLGMTVTPQITPDGQIIMDIKVN 603
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ V P ++ DT + +GGT++L G+ +++ + +PLL IP++G
Sbjct: 604 K-DSVNRNCGASEPCIDTKRLDTKAMVENGGTLILGGIYEEENSEGVSKVPLLGDIPVVG 662
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPV 422
LF++ N + E+ I TP +V V
Sbjct: 663 NLFKSRSRNTSKKELLIFITPRIVDNV 689
>gi|262170433|ref|ZP_06038111.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451]
gi|261891509|gb|EEY37495.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451]
Length = 567
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 59/309 (19%), Positives = 115/309 (37%), Gaps = 28/309 (9%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ ++ + G V + + T + ++++ L+I + QV
Sbjct: 259 KASDIAAMIGGEGNVNMLSERGTISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 317
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232
++ I V+ L ++G + + ++ S
Sbjct: 318 QIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVN 377
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ F V + + L AL+ + ++ P L + Q A G +
Sbjct: 378 LASTSANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 437
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350
Y SS+GAT+V+ + L TP + R+ L + + G+ S
Sbjct: 438 IPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 496
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++ T V + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+
Sbjct: 497 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 556
Query: 411 FIAATPFLV 419
I TP +V
Sbjct: 557 LIFVTPKVV 565
>gi|294142779|ref|YP_003558757.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12]
gi|293329248|dbj|BAJ03979.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12]
Length = 643
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 63/305 (20%), Positives = 119/305 (39%), Gaps = 25/305 (8%)
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS-GRNQYANSSSKKVMNLLNIAGEDQV 196
+ +L G ++ S+ + + E + + + +++ +L+I QV
Sbjct: 337 AKAADIAELLKGEDSSLLTSRGSATVDERTNTLLVKDTEDTLENIHRLIEVLDIPIR-QV 395
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------------------FAADFGG 236
++ + V+ ++ + +G Q IT S
Sbjct: 396 LIEARMVTVKDNVSEDLGIQWGITDQQGTRGTSGSIEGAESIAGGLIPALADRLNVALPA 455
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ F V + D + L ALE+ +A P + S Q A++ G +
Sbjct: 456 PAGAASIAFHVARLADGTILDMELSALEQENKGEIIASPRIMT-SNQKAAYIEQGVQIPY 514
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVR 354
SSS+GA +V+ + L TP + R+ L ++ V+ G+ S +
Sbjct: 515 VESSSSGAATVSFKKAVLSLRVTPQITPDNRVILDLEITQDSQGEVVATPLGEAVSIDTQ 574
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ T V + G TIVL G+ + ++ +P+L IP LG LFR++ E E+ I
Sbjct: 575 RIGTQVLVNHGETIVLGGIYQQNLISRVSKVPILGDIPFLGFLFRSTSDKNERQELLIFV 634
Query: 415 TPFLV 419
TP ++
Sbjct: 635 TPKII 639
>gi|332535166|ref|ZP_08410973.1| type II secretion outer membrane pore forming protein PulD
[Pseudoalteromonas haloplanktis ANT/505]
gi|332035385|gb|EGI71885.1| type II secretion outer membrane pore forming protein PulD
[Pseudoalteromonas haloplanktis ANT/505]
Length = 687
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 60/293 (20%), Positives = 100/293 (34%), Gaps = 47/293 (16%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S + V+ L+I QV ++ I EV +G Q +
Sbjct: 331 TAQPDTMRSLESVIERLDIR-RAQVLVEAIIIEVMEGDGVNLGLQWISEQGGMLQFNNGT 389
Query: 232 ADFGGKFVSEG---------------------------------------GDFSVKGVLD 252
G G + +
Sbjct: 390 TVPVGSLAVAAEQAQDVTVTKNIIGTESGTVTPYTETTEGDYGPLASLLSGINGLALGVV 449
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSV 307
+ + ++ A+ T LA P++T + + AS G + T S + +V
Sbjct: 450 KNDWGAIIQAVATDTNSNILATPSITTMDNEEASILVGQEVPIITGSQTGSNNANPFQTV 509
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ G+ L TP + + L I+ EVS S R TTV GG
Sbjct: 510 ERQEVGIKLIVTPQINDGSAVQLTIEQEVSSVSGATAVD--ISVNKRAIKTTVMADDGGM 567
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+VL GL+ +D+Q+ +PLL IPILG LFR++ R + + + P +++
Sbjct: 568 VVLGGLIDEDVQESVSKVPLLGDIPILGHLFRSTNTTRRKRNLIVFIRPTIIR 620
>gi|260718933|ref|YP_003225074.1| type II secretion protein EtpD [Escherichia coli O103:H2 str.
12009]
gi|257762444|dbj|BAI33940.1| type II secretion protein EtpD [Escherichia coli O103:H2 str.
12009]
Length = 656
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 56/308 (18%), Positives = 115/308 (37%), Gaps = 34/308 (11%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192
VL G+ I++ + +E + +++ + V++ L+I
Sbjct: 285 VLTGISSNIENDAKKSSSTEALRKGVTIKSHEQTNALILTGAPDVIRDLENVISQLDIRR 344
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------------KFV 239
QV ++ IAEV+ +G Q S S +
Sbjct: 345 P-QVLVEAIIAEVQDADGLNLGIQWVNKHSGVTQFTSTGLPITTMVQTRQSDISDSDQSN 403
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ + + ++ +L AL ++ LA P++ + A+F G + + S
Sbjct: 404 TLSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGS 463
Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYR 352
+T +V G+ L P + + L I+ EVS + + ++
Sbjct: 464 QTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFN 523
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R + + +G T+V+ GLL I+ + +PLL IP+LG LF + + + + +
Sbjct: 524 TRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLML 583
Query: 413 AATPFLVK 420
P +++
Sbjct: 584 FIRPTIIR 591
>gi|34979599|gb|AAQ83844.1| type IV pilus biogenesis secretin PilQ precursor [Legionella
pneumophila 130b]
gi|307609724|emb|CBW99235.1| type IV pilus [Legionella pneumophila 130b]
Length = 698
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/312 (19%), Positives = 117/312 (37%), Gaps = 30/312 (9%)
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAG 192
I +D VL + S R + + + +++ L+I
Sbjct: 372 QINYAKAADIAVLIKDKQNSLLSDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPV 431
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------- 233
+ QV ++ I EV +D + IG + ++ + A+
Sbjct: 432 K-QVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLN 490
Query: 234 ------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
++ + D + L ALE ++ P L + Q A+
Sbjct: 491 LDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAV 549
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G+ + ++S+GAT+V + L TP + G+I + +Q P
Sbjct: 550 IESGEEIPYQEATSSGATAVAFKKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLG 608
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P+ ++ T V + +G TIVL G+ K D ++ IP ++P++G LF N + +
Sbjct: 609 VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKN 668
Query: 408 TEIFIAATPFLV 419
E+ I TP ++
Sbjct: 669 EELLIFITPRII 680
>gi|262373971|ref|ZP_06067248.1| general secretion pathway protein D [Acinetobacter junii SH205]
gi|262310982|gb|EEY92069.1| general secretion pathway protein D [Acinetobacter junii SH205]
Length = 751
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 30/267 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L+I QV ++ I EV D Q+G Q ++ SSG + G
Sbjct: 379 EAAIQQLDIR-RQQVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLINFTNVGSSLSKL 437
Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278
+ G S + ++ AL+ T L+ P++
Sbjct: 438 AAGYLTGGAAGLGSAIGAGSSIVVGDYKEGANGSRKLYGALIQALKSNTKSNLLSTPSIV 497
Query: 279 AISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ + A G + T S + T+V D GV L P + G + L +
Sbjct: 498 TMDNEEAYIVVGQNVPFVTGSVTTNSTGVNPYTTVERKDVGVTLKVVPHIGEGGSVRLEV 557
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ EVS R T+V G T+VL GL+ D+ ++G+P+L IP
Sbjct: 558 EQEVSAVQESRGQATDLVTSKRAIKTSVLADHGQTVVLGGLISDNSIHSRQGLPVLGDIP 617
Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
LG LFR E+ + + P +V
Sbjct: 618 YLGRLFRADSKTNEKRNLLVFIHPTIV 644
>gi|54296952|ref|YP_123321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
str. Paris]
gi|53750737|emb|CAH12144.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
str. Paris]
Length = 698
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/312 (19%), Positives = 117/312 (37%), Gaps = 30/312 (9%)
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAG 192
I +D VL + S R + + + +++ L+I
Sbjct: 372 QINYAKAADIAVLIKDKQNSLLSDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPV 431
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------- 233
+ QV ++ I EV +D + IG + ++ + A+
Sbjct: 432 K-QVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLN 490
Query: 234 ------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
++ + D + L ALE ++ P L + Q A+
Sbjct: 491 LDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAV 549
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G+ + ++S+GAT+V + L TP + G+I + +Q P
Sbjct: 550 IESGEEIPYQEATSSGATAVAFKKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLG 608
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P+ ++ T V + +G TIVL G+ K D ++ IP ++P++G LF N + +
Sbjct: 609 VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKN 668
Query: 408 TEIFIAATPFLV 419
E+ I TP ++
Sbjct: 669 EELLIFITPRII 680
>gi|261823291|ref|YP_003261397.1| outer membrane porin HofQ [Pectobacterium wasabiae WPP163]
gi|261607304|gb|ACX89790.1| type IV pilus secretin PilQ [Pectobacterium wasabiae WPP163]
Length = 424
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 74/439 (16%), Positives = 162/439 (36%), Gaps = 39/439 (8%)
Query: 1 MRYLQRTFFTMMSIFLFSSNP--SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI 58
M +S L + P A+ + I + +++++ + +
Sbjct: 1 MNIRMLCRVATLSWLLLLTVPYQVGAEPSVSMAFENSPIPQVLQALADHQQLNVVIAPGV 60
Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
+ + + +V + +G+ +V +G +L
Sbjct: 61 TGNLSLRLAEV-------------PWQQALDIVLRMGKLSV---ERNGNVLLVFPAEHLA 104
Query: 119 DIAHLEMT----LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-- 172
+ L + + N+ V + VV + ++Q + A+ + ++
Sbjct: 105 SQQKEKDERMVELAQKLPLHNLSVALQYADVV--DVAASVQAQRGALLSTRGSVTVDKRT 162
Query: 173 ------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
+ A + + + L++ QV L I + + L+ +G + ++
Sbjct: 163 NTLLIRDTEDALAQLEPWLKELDLPL-AQVQLAAHIVTISSEHLQALGVNWGLGEGNAAN 221
Query: 227 SKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+F + + L+ + L ALE+ + + +A P L Q
Sbjct: 222 KALRLNNFNVGLPVDTPAVNAGFHLARLNGRLLDLELMALEQESQVEIIASPRLFTAHQQ 281
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
+AS G + Y+ S ++G+TS+ + + + TP +L GRI L ++ + P +
Sbjct: 282 TASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPDILRAGRITLNLKISQNMPGQTI 341
Query: 344 ---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G+ + ++ T V + G TIVL G+ + + +P+L ++P+ G LFRN
Sbjct: 342 KQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQQKKNSGSQVPILGEVPVFGHLFRN 401
Query: 401 SRFNREETEIFIAATPFLV 419
E+ I TP L+
Sbjct: 402 HTQQHTRRELVIFITPTLI 420
>gi|149911345|ref|ZP_01899965.1| putative type II secretory pathway, component EpsD [Moritella sp.
PE36]
gi|149805585|gb|EDM65588.1| putative type II secretory pathway, component EpsD [Moritella sp.
PE36]
Length = 699
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 54/293 (18%), Positives = 107/293 (36%), Gaps = 47/293 (16%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSK 228
+ ++V+N L+I QV ++ I E+ G Q + ++
Sbjct: 325 TAQPDVMRTLQQVINQLDIR-RAQVLVEAIIVEISEGDGINFGVQWLSEAGGTQYNNGTQ 383
Query: 229 SFAADFGGKF------------------------------------VSEGGDFSVKGVLD 252
G +S ++ +
Sbjct: 384 VPLTTIGAGIYDAQDTTTTTTGTDAQGNPTSTTSTTTGDISTLAAALSGVNGLALGVMNS 443
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSV 307
SF ++ A + LA P++ + Q ASF G + T SS +V
Sbjct: 444 AKSFGAIIQASANDSNSNILATPSIMTLDNQEASFIVGEEVPVITGSSASSGNDNPFQTV 503
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ G+ L TP + + L I+ EVS+ + + ++ R+ +TT+ SG T
Sbjct: 504 ERREVGIKLTVTPQINEGDAVQLTIEQEVSQVLGSTSVD--VTFAKRQVNTTILADSGQT 561
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+V+ GLL + + + +P L IP +G LF+++ + ++ + I +++
Sbjct: 562 VVIGGLLDEQVIESVSKVPWLGDIPWIGNLFKSTSSSTKKRNLMIFIKATIIR 614
>gi|330966297|gb|EGH66557.1| general secretion pathway protein D [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 775
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 59/261 (22%), Positives = 96/261 (36%), Gaps = 19/261 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244
QV ++ I EV +G Q S T + + G +
Sbjct: 501 PLQVQIETRILEVSLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 560
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ + + L ALE + L+ P+L ++ Q A G S +T
Sbjct: 561 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 620
Query: 305 TS------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRK 355
++ V GV+L P + G + + IQ +VS N P R
Sbjct: 621 STNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRS 680
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T V SG T++L GL+K D + +P L +IP L LF N+ ++ TE+ + T
Sbjct: 681 VSTQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLIT 740
Query: 416 PFLVKPVAMRDLSRPDDHYSV 436
P ++ + + D Y
Sbjct: 741 PRVI--TSSSQARQVTDDYRQ 759
>gi|294341497|emb|CAZ89914.1| putative general secretion pathway protein [Thiomonas sp. 3As]
Length = 884
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/326 (20%), Positives = 114/326 (34%), Gaps = 43/326 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKSF 230
+V+ L++ QV ++ IAEV + Q+G Q GS+ G S
Sbjct: 426 RVIERLDVR-RAQVYVEALIAEVDANKAAQLGIQWQAIAGSAGNQNAIIGGSNYGTGGSN 484
Query: 231 AADFGGKFVSEGGDFSVKGVLDRF------------------SFETVLHALERATAIRTL 272
+ G + + + + L+ L
Sbjct: 485 IINLQAAISGGGSSAATALASGSLAIPNGLNIGILHNVAGMATLGLLANFLQTQDGANIL 544
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLS 324
+ P L + + A G + T + T ++ D G+ L P + +
Sbjct: 545 SAPNLMTLDNEEAKIVVGQNVPFVTGQYAQTGSSATVTPFQTIERKDVGLTLKVRPQITA 604
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
G I + + EVS NA + R T V + G TIVL GL++D++ Q
Sbjct: 605 GGAIKMDVYQEVSSISSTTNAAGI-ITNKRSIQTAVLVNDGQTIVLGGLMQDNVSQNNSK 663
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
IP L IP LGALFR++ ++T++ + P +V+ D +
Sbjct: 664 IPGLGDIPGLGALFRSNSRTAQKTDLMVFLRPIVVR---TEDQGNALSQQRYDTMRGMQD 720
Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIG 470
++ +G E + +G G
Sbjct: 721 RAQLPAQFGMPEMPGPVLPSLQGDTG 746
>gi|153825107|ref|ZP_01977774.1| fimbrial assembly protein [Vibrio cholerae MZO-2]
gi|149741253|gb|EDM55295.1| fimbrial assembly protein [Vibrio cholerae MZO-2]
Length = 578
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
+ I ++ ++ ++ + V Q VL V R
Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+ G + +I + + R L I + + ++ +
Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + T + +++ L+I + QV ++ I V+
Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIHEIIESLDIPVK-QVQIEARIVTVK 338
Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
L+++G + + ++ S + +
Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 398
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F V + + L AL+ + ++ P L + Q A G + Y SS+
Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
GA++V + L TP + R+ L + + G+ S ++ T V
Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V
Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
>gi|26991756|ref|NP_747181.1| type IV pilus secretin PilQ [Pseudomonas putida KT2440]
gi|24986864|gb|AAN70645.1|AE016708_6 type IV pili biogenesis protein PilQ [Pseudomonas putida KT2440]
Length = 420
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 70/418 (16%), Positives = 151/418 (36%), Gaps = 13/418 (3%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
+++ T++SI L S+ P + P + + +++ + + V
Sbjct: 4 WMKYLLATLLSIPLASATPYQGE-PLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSV 62
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
+ +QD V D+V+ S L + G ++ + + + AH
Sbjct: 63 TLRLQD--VPWDQALDLVLRSKG---LSRRQEGNVLLVAPAAEFAAQSADARVSQALDAH 117
Query: 123 LEMTLRRFIA--DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
L+ R + + L G E + T + ++ A
Sbjct: 118 LQPLRRELLPIHHAKAADLAQLLLAGLEGDGIPPASLS-VDERTNTLVVHLPADRLAEMR 176
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
+++ L++ QV ++ I E D K +G +
Sbjct: 177 --QLVAQLDVPVR-QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGLER 233
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G + + + L A+E++ +++P + ++A G + Y+ S
Sbjct: 234 AGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQ 293
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
S GATSV+ + + L TP + ++ + ++ EP ++P R + + V
Sbjct: 294 S-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNAKV 352
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ G TIV+ G+ + + +P +P +G LFR +++E+ + TP +
Sbjct: 353 RVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 410
>gi|292493619|ref|YP_003529058.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4]
gi|291582214|gb|ADE16671.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4]
Length = 767
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 75/338 (22%), Positives = 133/338 (39%), Gaps = 24/338 (7%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDI 209
++ V + + + + K+++ L QV ++ TIAEV+
Sbjct: 429 ADDDADEKEVRIIADVENNALLISATSRDYDKILSALRQLDIPPRQVLVEATIAEVQLTD 488
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETV 259
Q G Q + + A +F G G + D +
Sbjct: 489 NLQYGLQWFFRNEVGEFTGTGAVNFSTDVGDNGFLQGVEGLLGGGGFTYALTDDSIVRAL 548
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDY 312
L L + + L+ P L A+ Q+A+ G Q T +T + V D
Sbjct: 549 LRTLASDSKLNVLSSPQLLALDNQTAAIRVGDQVPILTGQTAGLAGTGNTLTSQVQFRDT 608
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
GV+L TP V + GR+ L I+ EV++ PV + ++ R ++ V + SG TIV
Sbjct: 609 GVLLTVTPRVNAGGRVTLEIRQEVTDVGDPVTVGSDIQNFTFLQRTFESVVTVQSGETIV 668
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
L GL++D G+P L K+P +G LF ++ +++ TE+ + TP +V+ +
Sbjct: 669 LGGLIRDRDSFTDSGVPFLYKLPFIGPLFGSTTRDKQRTELIVLMTPRVVR--DQHEARL 726
Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
+ + + + + I K E + KG
Sbjct: 727 VTEEFRQKLRNASDVAEEMGGIAPQKVNEEEISPSTKG 764
>gi|258620495|ref|ZP_05715533.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573]
gi|258587374|gb|EEW12085.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573]
Length = 572
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 60/309 (19%), Positives = 115/309 (37%), Gaps = 28/309 (9%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ ++ + G V + D T + ++++ L+I + QV
Sbjct: 264 KASDIAAMIGGEGNVNMLSDRGTISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 322
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232
++ I V+ L ++G + + ++ S
Sbjct: 323 QIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVN 382
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ F V + + L AL+ + ++ P L + Q A G +
Sbjct: 383 LASTSANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 442
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350
Y SS+GAT+V+ + L TP + R+ L + + G+ S
Sbjct: 443 IPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 501
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++ T V + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+
Sbjct: 502 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 561
Query: 411 FIAATPFLV 419
I TP +V
Sbjct: 562 LIFVTPKVV 570
>gi|158520346|ref|YP_001528216.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3]
gi|158509172|gb|ABW66139.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3]
Length = 987
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 51/247 (20%), Positives = 103/247 (41%), Gaps = 23/247 (9%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-------------------D 233
QV +K I E ++ G + I + P+ +
Sbjct: 743 TPQVMIKARIVETSSSFSREFGTEWGIDNRYNSPNINIGTDGAYRDEMGGTYTYDVALNS 802
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
+ G + + FS + L +E ++ ++ P + + ++A+ + G +
Sbjct: 803 LSSPVQNLIGINFARIIGTPFSLDAKLSLMESTGDVKIISTPKVVTLDNKTATISQGIDY 862
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
Y V G V + L TP V RI +++ + ++ +N S+
Sbjct: 863 PYTVV--EDGEADVKWKTIDLNLDVTPHVTPDDRISMKLNIQKNDVGEIINGEQ--SFNT 918
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
++A T + + G T+V+ G++K+ + G+P +SKIP+LG LF+ + E++E+ I
Sbjct: 919 KRASTELLVNDGDTVVIGGIIKEREGAGERGVPWISKIPVLGNLFKYKTRSDEKSELLIF 978
Query: 414 ATPFLVK 420
TP +V+
Sbjct: 979 ITPNVVR 985
>gi|254228550|ref|ZP_04921975.1| general secretion pathway protein D [Vibrio sp. Ex25]
gi|262392666|ref|YP_003284520.1| general secretion pathway protein D/type II secretion outermembrane
pore forming protein (PulD) [Vibrio sp. Ex25]
gi|151938932|gb|EDN57765.1| general secretion pathway protein D [Vibrio sp. Ex25]
gi|262336260|gb|ACY50055.1| general secretion pathway protein D/type II secretion outermembrane
pore forming protein (PulD) [Vibrio sp. Ex25]
Length = 672
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 67/383 (17%), Positives = 137/383 (35%), Gaps = 62/383 (16%)
Query: 96 QANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
+ N ILI D K L ++ + D+ R + N + E + D VL G+ +
Sbjct: 232 RTNAILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKNAKAEDLVD--VLKGVSDNL 289
Query: 155 QDSQRAVELSETFLSQS--------------GRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
Q ++ + + ++ + V+ L+I QV ++
Sbjct: 290 QAEKQVGQKASGAQRGEVVIAAHAATNALVLTAPPDIMNALQDVIAQLDIR-RAQVLIEA 348
Query: 201 TIAEVRRDILKQIGFQHS--------------------------------------ITGS 222
I E+ +G Q G
Sbjct: 349 LIVEMSEGDGINLGVQWGSLETGAVIQYGNSGAPIGQVMVGLEEAKDQTRTEYYTNANGE 408
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ + + D+ + G + + ++ A+ + L+ P++T +
Sbjct: 409 RTPYDVTESGDYSTLASALSGVNGAAMSIVMGDWTALVSAVATDSNSNILSSPSITVMDN 468
Query: 283 QSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
ASF G + T ++ +V + G+ L P + + L I+ EVS
Sbjct: 469 GEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVS 528
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG L
Sbjct: 529 NVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHL 587
Query: 398 FRNSRFNREETEIFIAATPFLVK 420
F+++ E+ + + P +++
Sbjct: 588 FKSTSTQTEKRNLMVFIKPTIIR 610
>gi|156972923|ref|YP_001443830.1| general secretion pathway protein D [Vibrio harveyi ATCC BAA-1116]
gi|156524517|gb|ABU69603.1| hypothetical protein VIBHAR_00601 [Vibrio harveyi ATCC BAA-1116]
Length = 658
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/458 (14%), Positives = 154/458 (33%), Gaps = 88/458 (19%)
Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98
I + + ++ ++ ++ V + ++ S M + +
Sbjct: 139 NIILITGRAAVVNRLAEIIKRVDQAGDKEIEVVELRNASASEMVRIVDALNKTTNQKSTP 198
Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
++ +++ D + + L L +A ++ D V
Sbjct: 199 EFLEPKIVADDRTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 258
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190
VL G+ +Q ++A + + + A+ ++ V++ L+I
Sbjct: 259 VLKGVSDNLQAEKQAGQNGASSAQRGEVVIAAHEATNSLVLTAQPDIMMALQDVISQLDI 318
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADF------------ 234
QV ++ I E+ +G Q + G + + +
Sbjct: 319 R-RAQVLIEALIVEMSEGDGINLGVQWGNLDTGAVIQYGNTGAQIGNVMVGLEEAKDTTK 377
Query: 235 ---------------------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ GG + + ++ A+ +
Sbjct: 378 TESYWDEDANGGSGDWNTREYIEEGDYSTLAAALGGVNGAAMSIMMGDWTALITAVSSDS 437
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTV 322
L+ P++T + ASF G + T ++ +V + G+ L P +
Sbjct: 438 NSNILSSPSITVMDNGEASFIVGEEVPVITGSTSGSNNDNPFQTVDRKEVGIKLKVVPQI 497
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + +
Sbjct: 498 NEGDSVQLTIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESE 556
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+PLL IP++G LF+++ E+ + + P +++
Sbjct: 557 SKVPLLGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIR 594
>gi|145298443|ref|YP_001141284.1| S-protein secretion component D [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851215|gb|ABO89536.1| S-protein secretion component D [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 719
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 69/309 (22%), Positives = 115/309 (37%), Gaps = 23/309 (7%)
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVT 197
+ V+T+ + + ++++ LL QV
Sbjct: 407 NSGRAIPKSNNVQTMSVMTDQYRVVVDAKRNAIIFSGRYGDYQRLIELLQFVDQRPRQVL 466
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
L+ IAEV+ +GF+ +K + + G+ ++ GV
Sbjct: 467 LQAVIAEVKLTNDSSLGFEW-------NVNKGDITGGTSGLIQQTGNLNLAGVFG--DVT 517
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------ATSVTT 309
A + L+ P L + ++AS G Q + KT S G TS
Sbjct: 518 AKFAAALSEGNAKVLSSPRLVVLDQETASIKIGDQIVVKTGEISNGSSGNDPQVTTSYKY 577
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
D G+ L TP++ G I + I E+S G GD P R + + SG T+
Sbjct: 578 IDTGLSLEITPSINDDGLIEMVISQEISSVSAG--GGDTPPINRRAVQSKLLADSGKTVY 635
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
L GLL +E +PLL IP+LG LF+ E+TE+ + TP+++ + +
Sbjct: 636 LGGLLSQSNTNNEEKVPLLGDIPLLGNLFKYQTKKIEKTELVLLITPYVI--TSKEEAEF 693
Query: 430 PDDHYSVED 438
D +
Sbjct: 694 YTDQFRTLS 702
>gi|300114921|ref|YP_003761496.1| general secretion pathway protein D [Nitrosococcus watsonii C-113]
gi|299540858|gb|ADJ29175.1| general secretion pathway protein D [Nitrosococcus watsonii C-113]
Length = 833
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 67/289 (23%), Positives = 113/289 (39%), Gaps = 20/289 (6%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------DFGGKFVSEGGDFS 246
QV ++ TIAEV Q G Q T + + GG G
Sbjct: 539 PRQVLVEATIAEVALTGSLQYGLQWYFTNDLASGQGAGGQGALPALGEGGLQALMAGGGF 598
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
D +L L + L+ P L A+ Q+A G Q + ++ +
Sbjct: 599 TYAFADGGVVRALLRLLASENKVEILSSPQLLALDNQTAEIRVGDQVPIQQGQTTGIGGT 658
Query: 307 VT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG------VNAGDMPSYRVRKAD 357
D GV+L TP V + GR+ + + EV++ G P++ R
Sbjct: 659 TQQIRYRDTGVLLTVTPRVNAGGRVTMELTQEVTDVGGTSLPGGATTVGGNPTFLQRNFQ 718
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
+ V + SG TIVL GL++++ + G+P L K+P++G LF + +R+ TE+ + TP
Sbjct: 719 SVVTVQSGETIVLGGLIRNNDAFNQSGVPFLYKLPLIGPLFGTTTRSRQRTELVVLMTPR 778
Query: 418 LVKPVAMRDLSRPD--DHYSVEDDAKAFFFN---RVNKIYGPKEASEVE 461
+V+ L + + D ++ K G K + +
Sbjct: 779 VVRDQYEARLVTEELREKLKNASDVAEKTGGITFKIEKENGEKPSPSTD 827
>gi|56461571|ref|YP_156852.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis
L2TR]
gi|56180581|gb|AAV83303.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis
L2TR]
Length = 427
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 55/328 (16%), Positives = 125/328 (38%), Gaps = 37/328 (11%)
Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFI--ADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+L+++ D+A L ++ + + V+ ++T++L T +
Sbjct: 123 NEYHSILLSVNFAKASDLAKLLKNEQQSFLSPNGAVSVDARTNTLILR---DTPEQLATI 179
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+L +N L++ + QV ++ + V+ ++ K++G + ++
Sbjct: 180 RQL---------------------VNDLDVPVK-QVLIEARMVTVKANVSKELGIRWGVS 217
Query: 221 GSSSGPSKSFAA-------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
+ + D + ++ + D + L ALE+ +
Sbjct: 218 EYGLAIPEDAGSFVKGMQVDLPTAAPAGTFSANLARLSDDILLDLELTALEQENKAEIIT 277
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
P + + Q A G + Y ++ GAT+V + L TP + + + +
Sbjct: 278 SPKIFTSNQQPAYIEQGTEIPYVET-AAHGATAVQFKKAVMGLSVTPQITPNNHVLMELT 336
Query: 334 TEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ V P+ ++ T V +G TIVL G+ ++ +P+L +
Sbjct: 337 ITQNTRGDTVATPTGPAVAIDTQEMSTRVLAKNGETIVLGGIFQEHNLNDDSRVPILGSL 396
Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
P++G LF + + E+ E+ I TP ++
Sbjct: 397 PLIGKLFSHQQQRDEKRELMIFVTPTIL 424
>gi|90580860|ref|ZP_01236662.1| putative fimbrial assembly protein [Vibrio angustum S14]
gi|90437931|gb|EAS63120.1| putative fimbrial assembly protein [Vibrio angustum S14]
Length = 574
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 73/416 (17%), Positives = 144/416 (34%), Gaps = 39/416 (9%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
+ I ++ ++ + V + + D V P D+++ S
Sbjct: 168 FQDIPVRNVLQLIADYNDFNLVVSDSVSGNVTLRLDD--VPWPQVLDIILQSKD----LD 221
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM- 150
K V + +++ ++ + ++LR + N + +L G
Sbjct: 222 KRVRGSVLLVAPKAELTASEHQVMEAKRKQQELLSLRSDLIQVN-YAKATDIAALLSGST 280
Query: 151 --VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
V + + T S K +++ L+I + QV ++ I +
Sbjct: 281 DGVGMLSERGSLHVDERTNALIIKDTPDNIRSIKDIVSSLDIPVK-QVQIEARIVTINEG 339
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------------------GDF 245
+ ++G + + S + G S G
Sbjct: 340 DIDELGVRWGV--SKVNGDTTVGGSIEGNLASSGLLGEDATVDDFLNVNLGAGAGAASIA 397
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
L + L AL+ ++ P L + ++A G + Y SS+GAT
Sbjct: 398 FQVAKLGNILLDLELSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEA-SSSGAT 456
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELP 363
SV+ + L TP + ++ L ++ + G S ++ T V +
Sbjct: 457 SVSFKKAVLSLMVTPQITPDDKLVLDLEVTQDNKGEDVPTGTGTAISIDTQRIGTQVLVN 516
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G T+VL G+ + + + +PLL IP+LGALFR+ + E+ I TP +V
Sbjct: 517 NGETVVLGGIYQHSMTNVTRKVPLLGDIPVLGALFRHKMEQMGKRELLIFVTPKIV 572
>gi|194365988|ref|YP_002028598.1| general secretion pathway protein D [Stenotrophomonas maltophilia
R551-3]
gi|194348792|gb|ACF51915.1| general secretion pathway protein D [Stenotrophomonas maltophilia
R551-3]
Length = 793
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/276 (23%), Positives = 114/276 (41%), Gaps = 30/276 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+V++ L+ QV ++ I EV + ++G Q + + F GG ++
Sbjct: 381 RVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTNGGSGLNTA 439
Query: 243 -------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G ++ GV + + + +AL+ L+ P L + +
Sbjct: 440 ARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSKGGANILSTPNLMTLDNE 499
Query: 284 SASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+AS G + + S+ ++ D G+ L P + G + L I E
Sbjct: 500 AASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQE 559
Query: 336 VSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
VS + R DT+V L G +VL GLL+D + ++ +P L KIP+L
Sbjct: 560 VSSIDAQSANSTVGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVL 619
Query: 395 GALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429
GALFR+ R +T + + P +V+ P A + L+R
Sbjct: 620 GALFRSDTRKRAKTNLMVFLRPHVVRDPAAGQRLTR 655
>gi|299771842|ref|YP_003733868.1| general secretion pathway protein D [Acinetobacter sp. DR1]
gi|298701930|gb|ADI92495.1| general secretion pathway protein D [Acinetobacter sp. DR1]
Length = 757
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 62/269 (23%), Positives = 103/269 (38%), Gaps = 32/269 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S
Sbjct: 381 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 439
Query: 242 GGDF------------------SVKGVLDRFSF-------ETVLHALERATAIRTLAEPT 276
+ L +F ++ AL+ T L+ P+
Sbjct: 440 AAGYLSGGSAGAASAIAGGANKGNGATLALGNFENSRKAYGALIQALKSNTKSNLLSTPS 499
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + + A G + T S + T+V D GV L P + G + L
Sbjct: 500 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 559
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++ EVS R T V G T+VL GL+ DD++ ++GIP LS
Sbjct: 560 EVEQEVSNVQTSKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVELSRQGIPGLSS 619
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
IP +G LFR+ + + + + P +V
Sbjct: 620 IPYVGRLFRSDSRSNTKRNLLVFIHPTIV 648
>gi|157372838|ref|YP_001480827.1| putative outer membrane porin HofQ [Serratia proteamaculans 568]
gi|157324602|gb|ABV43699.1| type IV pilus secretin PilQ [Serratia proteamaculans 568]
Length = 413
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 68/297 (22%), Positives = 121/297 (40%), Gaps = 25/297 (8%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGR--NQYANSSSKKVMNLLNIAGED------------- 194
V A E++E +Q G ++ + + K N + I
Sbjct: 117 SVTLPLSHADAEEVAENLNAQGGILLSERGSVVADKRTNAVLIRDTASIVALLTQRIGEM 176
Query: 195 -----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFS 246
QV L I + + L+++G + + S F S
Sbjct: 177 DAPLAQVQLATHIVTINSESLRELGVRWGLAPDDRPASSWQMDGFNVGLPLERSAVSAGF 236
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ + L ALE+ + +A P L + Q+AS G + Y+ S S+GATS
Sbjct: 237 HLARIGGRLLDLELMALEQENRVEIIASPRLLTANLQTASIKQGTEIPYEVNSGSSGATS 296
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPS 364
+ + + + TP +L GRI L +Q + P ++ AG+ + ++ T V +
Sbjct: 297 MEFKEAVLGMEVTPKILPNGRITLTLQISQNMPGRSISRAAGETLAIDKQEIKTQVTVKD 356
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
G T+VL G+ + + + +P +S +P+LG+LF+ S + E+ I TP L+K
Sbjct: 357 GETVVLGGVFQRHSAEGADKVPGISDVPLLGSLFKQSSKQHKRRELVIFITPTLIKA 413
>gi|17547833|ref|NP_521235.1| general secretion pathway protein D [Ralstonia solanacearum
GMI1000]
gi|17430138|emb|CAD16823.1| probable general secretory pathway d transmembrane protein
[Ralstonia solanacearum GMI1000]
Length = 805
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 70/294 (23%), Positives = 110/294 (37%), Gaps = 44/294 (14%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
A QV ++ I EV D Q+G Q + +FG
Sbjct: 429 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVIAAT 488
Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
G VS + +L AL ++ L+ P
Sbjct: 489 VGSGGIGSTAAQTALGSITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 548
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
L + + A G T S + T + D G+ L P + G +
Sbjct: 549 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGMV 608
Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P
Sbjct: 609 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVIANDGQVIVLGGLLEDNYQDSEQKVPG 668
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
L IP+LGALFR+ R++T + + P++++ A + D+ Y+ DA+
Sbjct: 669 LGDIPVLGALFRSESKTRKKTNLLVFLRPYILR-TAEATGALSDNRYNYMRDAQ 721
>gi|17547690|ref|NP_521092.1| fimbrial type-4 assembly signal peptide protein [Ralstonia
solanacearum GMI1000]
gi|17429995|emb|CAD16680.1| probable fimbrial type-4 assembly signal peptide protein [Ralstonia
solanacearum GMI1000]
Length = 714
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231
QV ++ I E + +G + ++G
Sbjct: 462 RQVMIEARIVEADDTFSRNLGAKLGFAAKTNGAGYGNTYSNVVSPVTKDATWDNSAAVSL 521
Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
A+ + S+ L ALE + ++ P + A G
Sbjct: 522 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 581
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
+ Y+ +SS GATSV+ + L TP + G + L +V++ +G + +
Sbjct: 582 TEVPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNVFLD--VDVNKDSLGTQTTNGFA 638
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+
Sbjct: 639 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 698
Query: 411 FIAATPFLV 419
+ TP ++
Sbjct: 699 LVFLTPRVL 707
>gi|15642625|ref|NP_232258.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121587503|ref|ZP_01677270.1| fimbrial assembly protein [Vibrio cholerae 2740-80]
gi|121727577|ref|ZP_01680685.1| fimbrial assembly protein [Vibrio cholerae V52]
gi|147673064|ref|YP_001218123.1| fimbrial assembly protein [Vibrio cholerae O395]
gi|153217486|ref|ZP_01951197.1| fimbrial assembly protein [Vibrio cholerae 1587]
gi|153820291|ref|ZP_01972958.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457]
gi|153821537|ref|ZP_01974204.1| fimbrial assembly protein [Vibrio cholerae B33]
gi|153830200|ref|ZP_01982867.1| fimbrial assembly protein [Vibrio cholerae 623-39]
gi|227082746|ref|YP_002811297.1| fimbrial assembly protein [Vibrio cholerae M66-2]
gi|254851169|ref|ZP_05240519.1| fimbrial assembly protein [Vibrio cholerae MO10]
gi|298500547|ref|ZP_07010351.1| fimbrial assembly protein [Vibrio cholerae MAK 757]
gi|9657220|gb|AAF95771.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121548234|gb|EAX58302.1| fimbrial assembly protein [Vibrio cholerae 2740-80]
gi|121630068|gb|EAX62473.1| fimbrial assembly protein [Vibrio cholerae V52]
gi|124113543|gb|EAY32363.1| fimbrial assembly protein [Vibrio cholerae 1587]
gi|126509166|gb|EAZ71760.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457]
gi|126520922|gb|EAZ78145.1| fimbrial assembly protein [Vibrio cholerae B33]
gi|146314947|gb|ABQ19486.1| fimbrial assembly protein [Vibrio cholerae O395]
gi|148874303|gb|EDL72438.1| fimbrial assembly protein [Vibrio cholerae 623-39]
gi|227010634|gb|ACP06846.1| fimbrial assembly protein [Vibrio cholerae M66-2]
gi|227014518|gb|ACP10728.1| fimbrial assembly protein [Vibrio cholerae O395]
gi|254846874|gb|EET25288.1| fimbrial assembly protein [Vibrio cholerae MO10]
gi|297540716|gb|EFH76773.1| fimbrial assembly protein [Vibrio cholerae MAK 757]
Length = 578
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 70/419 (16%), Positives = 142/419 (33%), Gaps = 43/419 (10%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
+ I ++ ++ ++ + V Q VL V R
Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+ G + +I + + R L I + + ++ +
Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + T + ++++ L+I + QV ++ I V+
Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 338
Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
L+++G + + ++ S + +
Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 398
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F V + + L AL+ + ++ P L + Q A G + Y SS+
Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
GA++V + L TP + R+ L + + G+ S ++ T V
Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V
Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
>gi|254225379|ref|ZP_04918990.1| fimbrial assembly protein [Vibrio cholerae V51]
gi|125622013|gb|EAZ50336.1| fimbrial assembly protein [Vibrio cholerae V51]
Length = 578
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 70/419 (16%), Positives = 142/419 (33%), Gaps = 43/419 (10%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
+ I ++ ++ ++ + V Q VL V R
Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+ G + +I + + R L I + + ++ +
Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + T + ++++ L+I + QV ++ I V+
Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 338
Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
L+++G + + ++ S + +
Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 398
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F V + + L AL+ + ++ P L + Q A G + Y SS+
Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
GA++V + L TP + R+ L + + G+ S ++ T V
Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V
Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
>gi|104779612|ref|YP_606110.1| type IV pili biogenesis protein PilQ [Pseudomonas entomophila L48]
gi|95108599|emb|CAK13293.1| putative type IV pili biogenesis protein PilQ [Pseudomonas
entomophila L48]
Length = 412
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/416 (15%), Positives = 149/416 (35%), Gaps = 22/416 (5%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
M+S + P + + I++ + + ++ + +++
Sbjct: 1 MLSGVRAALAAEFQGEPMSLNFQDVEVRGVLQVMADYAGINLVASDAVQGRITLRLEE-- 58
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
V D+V+ S L + G +I + + L + A LE R
Sbjct: 59 VPWDQALDLVLRSKG---LGRRQEGNVLLIAPIAELAEQSRGAHLEQALDARLEPLRREL 115
Query: 131 IADSNIRVEMVS--------DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
I + + ++ D +L G D++ + + G +
Sbjct: 116 IPVYHAKASDLAELLLASLADDGILAGRGSLSVDARTNTLVVAQPADRLGEIR------- 168
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+++ L++ QV ++ I E D K +G +
Sbjct: 169 RLVAQLDVPVR-QVMIEARIVEANIDYEKALGVRWGGPLYGQDNRLGSELFVDLGVERAT 227
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
V + + L A+E++ +++P + ++A G + Y+ + S
Sbjct: 228 SALGVGLLRSDVLLDLELSAMEKSGNGEIISQPRVVTADKETARILKGTEVPYQETTKS- 286
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
GATS++ + + L TP + G++ + ++ EP ++P R + + V +
Sbjct: 287 GATSISFREASLSLEVTPQITPDGKVIMEVRVTKDEPDFVNALNNVPPIRKNEVNAKVRV 346
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+G TIV+ G+ + + +P +P +G LFR +++E+ + TP +
Sbjct: 347 TNGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 402
>gi|254369170|ref|ZP_04985182.1| type IV pilus assembly protein [Francisella tularensis subsp.
holarctica FSC022]
gi|157122120|gb|EDO66260.1| type IV pilus assembly protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 590
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 73/416 (17%), Positives = 155/416 (37%), Gaps = 34/416 (8%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
P A + + + +++ ++ + + +D+++V P ++V+ S
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
L K + + + L++ +R + + + FI + +
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292
Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
+ +G + + + S A + T + K+V+N ++I DQV ++
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPCIKEVVNEIDIPN-DQVLIEA 349
Query: 201 TIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251
I EV R ++GF + + + G + + + G
Sbjct: 350 RIVEVLRTSALELGFNYDVVDPSGRVNIGLYTFNSNPNSAPGPTPTPVDTFVGTTAKLAY 409
Query: 252 ---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
E + ALE + +A P L + Q A F G+ + ++++GA +V
Sbjct: 410 TIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVA 468
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELP 363
+ + L TP + G I + I + P + R+ T V
Sbjct: 469 FQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTK 528
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++
Sbjct: 529 DGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 584
>gi|253998742|ref|YP_003050805.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
gi|253985421|gb|ACT50278.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
Length = 675
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 79/468 (16%), Positives = 169/468 (36%), Gaps = 63/468 (13%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
P E A I + + + I+ L+K I V + + D + T
Sbjct: 185 PVSLEFRDANIKMVFEALSRATGINFILDKDIRADAK---ATVYIRKASIEDAIEMVLAT 241
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLD-------ILIERDIAHLEMTLRRFIADSNIRVE 139
L K + + + ++ + +++ + L + TL+ + ++ V+
Sbjct: 242 NGLQKKALTETSALIFPNTPQKVKDYKELMIRSFYLTNASAKQVASTLKTVLKTKDVVVD 301
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+ +V+ + ++E ++ + + +V L+
Sbjct: 302 ERLNMIVMRDTP-------EVIHIAEKLVAANDL------------------ADPEVMLE 336
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------GDFSVK 248
+ + E+ R L+++G + S + + G G ++
Sbjct: 337 IEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDSPLTLEGLLNLN 396
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---AT 305
S ++ + + ++ P + + + A G + T +S+ +
Sbjct: 397 SSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIITTTSTANVGISE 456
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVEL 362
+VT D G+ L P + + ++I EVS + N + + R A T + L
Sbjct: 457 NVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTIGTRNASTLLRL 516
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
G +LAGL++D+ ++ +P L IPILG LF N + +TEI +A TP ++
Sbjct: 517 KDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIVLAITPRIL--- 573
Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
++ RPD + ++ N I + + G + A G
Sbjct: 574 --GNIRRPD------AEISEYWSGTENGISDKPQLAAPAGGGSQAASG 613
>gi|50083568|ref|YP_045078.1| putative general secretion pathway protein [Acinetobacter sp. ADP1]
gi|49529544|emb|CAG67256.1| putative general secretion pathway protein [Acinetobacter sp. ADP1]
Length = 772
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 33/270 (12%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
+ + L++ +QV ++ I EV D Q+G Q ++ +SG ++ G S
Sbjct: 383 EAAIQQLDVR-REQVLIEAAIIEVSGDDSDQLGIQWALGDLNSGVGLLSFSNVGASLASI 441
Query: 241 -----------------------EGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPT 276
G F+V + ++ ++ AL+ T L+ P+
Sbjct: 442 AAGYASTGTAGAAAAIASGTNSGNGATFAVGDFSNSRKAYGALIQALKSNTKSNVLSTPS 501
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPGRIG 329
+ + + A G + T S STG T+V D GV L P + G +
Sbjct: 502 IVTMDNEEAYIVVGQNVPFVTGSVSTGSTGTINPYTTVERKDVGVTLKVIPHIGENGTVR 561
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
L ++ EVS+ R T V G T+VL GL+ D+ ++GIP LS
Sbjct: 562 LEVEQEVSDVQSSKGQATDLVTNKRAIKTAVLAEHGQTVVLGGLISDNTSLTRQGIPGLS 621
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP LG LFR + E+ + + P ++
Sbjct: 622 NIPYLGRLFRADSKSNEKRNLLVFIHPTII 651
>gi|325204768|gb|ADZ00222.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240355]
Length = 761
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 49/257 (19%), Positives = 99/257 (38%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ S+ + + L A E + +TLA P + + +
Sbjct: 555 GDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751
>gi|83749448|ref|ZP_00946440.1| General secretion pathway protein D [Ralstonia solanacearum UW551]
gi|207738427|ref|YP_002256820.1| gspd-related protein [Ralstonia solanacearum IPO1609]
gi|83723885|gb|EAP71071.1| General secretion pathway protein D [Ralstonia solanacearum UW551]
gi|206591793|emb|CAQ58699.1| gspd-related protein [Ralstonia solanacearum IPO1609]
Length = 657
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 85/467 (18%), Positives = 161/467 (34%), Gaps = 58/467 (12%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
+ + + P E + A + + + ++ +K ++ V V + + T A
Sbjct: 176 ALSAAFRKPISLEFHDAQMRQVFEVLSRASGLNFVFDKD--VRTDQKV-TVFLRNSTVAS 232
Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
VV V + ++ + + +L D + T
Sbjct: 233 VVNTVLLTNQLEQRVLDGNAILIYPNTPAK-----QRDYQPLTVRTFVLSNSDAKDVANT 287
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L+ + +I V+ + +V+ IQ +++ V + E
Sbjct: 288 LKTILKTRDIVVDEKRNMIVMRDTPDAIQAAEKLVAVHEM-------------------- 327
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
E +V L+V I EV+R L+ +G Q S + + S +
Sbjct: 328 -----PEPEVMLEVEILEVKRSRLQDLGIQLPSQLSLTPLASSSGGTLTLDDLRHLNPTR 382
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
+ + + ++A LA P + + + A G + T +S+
Sbjct: 383 IGATVSPLNVN--VNAAVTD--TNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGFV 438
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360
A +V D G+ L PTV + +RI EVS+ V + R A T +
Sbjct: 439 AENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSIAYEIGTRNATTLL 498
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L G +LAGL++D+ + +P L IP LG LF N+ ++EI ++ TP +++
Sbjct: 499 RLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRVIR 558
Query: 421 PVAMRDLSRPDDHYSVEDDAKA---FFFNRVNKIYGPKEASEVEGQN 464
P +L + E + R P +
Sbjct: 559 PAQRPNLGSAEFDSGTESSLRLKSSMLHERSEPAPNPVAPGAAPTPS 605
>gi|229524610|ref|ZP_04414015.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis
VL426]
gi|229338191|gb|EEO03208.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis
VL426]
Length = 571
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
+ I ++ ++ ++ + V Q VL V R
Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+ G + +I + + R L I + + ++ +
Sbjct: 219 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + T + ++++ L+I + QV ++ I V+
Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 331
Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
L+++G + + ++ S + +
Sbjct: 332 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 391
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F V + + L AL+ + ++ P L + Q A G + Y SS+
Sbjct: 392 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 450
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
GA +V + L TP + R+ L + + G+ S ++ T V
Sbjct: 451 GAPTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V
Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569
>gi|254285824|ref|ZP_04960786.1| fimbrial assembly protein [Vibrio cholerae AM-19226]
gi|150424006|gb|EDN15945.1| fimbrial assembly protein [Vibrio cholerae AM-19226]
Length = 578
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
+ I ++ ++ ++ + V Q VL V R
Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+ G + +I + + R L I + + ++ +
Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + T + ++++ L+I + QV ++ I V+
Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 338
Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
L+++G + + ++ S +
Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGLLADDEFPVDEFLNVNLASTSANASS 398
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F V + + L AL+ + ++ P L + Q A G + Y SS+
Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
GA++V + L TP + R+ L + + G+ S ++ T V
Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V
Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
>gi|161830646|ref|YP_001597710.1| type II and III secretion system family protein [Coxiella burnetii
RSA 331]
gi|161762513|gb|ABX78155.1| bacterial type II and III secretion system family protein [Coxiella
burnetii RSA 331]
Length = 349
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 4/241 (1%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ +++ L+I QV +K I + L +G +++ + D +
Sbjct: 90 QSLVSQLDIPI-HQVLIKARIISISDHNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQF 148
Query: 242 G-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G D + + + L ALE+ + L+ P L + Q+A G+ + +
Sbjct: 149 GVADIPIIKFKNGQLLDLTLSALEQEGRAQVLSCPELMTNNRQTA-IIESGEAIPYQEKT 207
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
G TSVT + L TP VL RI L++ + + +P+ + ++ T V
Sbjct: 208 GQGNTSVTFKKATLRLKVTPVVLPGNRILLQLNVNQDKMSSFL-VNGVPTIQTQQLTTKV 266
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + T+VL G+ + QQ + GIP L KIPILG LFR+ + + E ++ I TP ++
Sbjct: 267 MVNNQETVVLGGIYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIIS 326
Query: 421 P 421
P
Sbjct: 327 P 327
>gi|157377488|ref|YP_001476088.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3]
gi|157319862|gb|ABV38960.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3]
Length = 724
Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/304 (20%), Positives = 110/304 (36%), Gaps = 46/304 (15%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ ++T + + V+N L+I QV ++ I EV G Q +
Sbjct: 315 IMAHADTNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVGEGDDVGFGVQWAT 373
Query: 220 TGSSSGPSKSFAADFG--------------------------------------GKFVSE 241
+ G +
Sbjct: 374 AAGGGTQFNNLGPTIGEIGAGVWQAQEKEASQTCTGSGDNKTCTDNPATQGDITLLAQAL 433
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G + + F ++ A+ T LA P++T + Q ASF G + T S+S
Sbjct: 434 GKVNGMAWGVAMGDFGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSTS 493
Query: 302 T-----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
+ +V + GV L P + + L I+ EVS ++ R+
Sbjct: 494 SSSNTNPFQTVERKEVGVKLKVVPQINEGTSVKLTIEQEVSGINGKTGVD--VTFATRRL 551
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
TTV SG +VL GL+K+++Q+ + +P L +PI+G LF++S +T + + P
Sbjct: 552 TTTVMADSGQIVVLGGLIKEEVQESVQKVPFLGDLPIIGHLFKSSSSGTRKTNLMVFIKP 611
Query: 417 FLVK 420
+++
Sbjct: 612 TIIR 615
>gi|215919282|ref|NP_820868.2| type II and III secretion system family protein [Coxiella burnetii
RSA 493]
gi|206584166|gb|AAO91382.2| type 4 pili secretin (outer membrane porin) [Coxiella burnetii RSA
493]
Length = 353
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 4/246 (1%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ +++ L+I QV +K I + L +G +++ + D +
Sbjct: 94 QSLVSQLDIPI-HQVLIKARIISISDHNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQF 152
Query: 242 G-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G D + + + L ALE+ + L+ P L + Q+A G+ + +
Sbjct: 153 GVADIPIIKFKNGQLLDLTLSALEQEGRAQVLSCPELMTNNRQTA-IIESGEAIPYQEKT 211
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
G TSVT + L TP VL RI L++ + + +P+ + ++ T V
Sbjct: 212 GQGNTSVTFKKATLRLKVTPVVLPGKRILLQLNVNQDKMSSFL-VNGVPTIQTQQLTTKV 270
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + T+VL G+ + QQ + GIP L KIPILG LFR+ + + E ++ I TP ++
Sbjct: 271 MVNNQETVVLGGIYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIIS 330
Query: 421 PVAMRD 426
P +
Sbjct: 331 PYEKKS 336
>gi|148550155|ref|YP_001270257.1| type IV pilus secretin PilQ [Pseudomonas putida F1]
gi|148514213|gb|ABQ81073.1| type IV pilus secretin PilQ [Pseudomonas putida F1]
Length = 420
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 66/420 (15%), Positives = 152/420 (36%), Gaps = 17/420 (4%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
+++ T++SI L S+ P + P + + +++ + + V
Sbjct: 4 WMKYLLATLLSIPLASATPYQGE-PLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSV 62
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
+ +QD V D+V+ S L + G ++ + + + A
Sbjct: 63 TLRLQD--VPWDQALDLVLRSKG---LSRRQEGNVLLVAPAAEFAAQSADARVSQVLDAQ 117
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLH----GMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
L+ R + + + ++ ++ G+ +L +
Sbjct: 118 LQPLRRELLPIHHAKAADLAQLLLASLEGGGIPTGSLSVDERTNTLVVYLPADRLAE--- 174
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
++++ L++ QV ++ I E D K +G +
Sbjct: 175 --MRQLVAQLDVPVR-QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGL 231
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G + + + L A+E++ +++P + ++A G + Y+
Sbjct: 232 ERAGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQET 291
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
S S GATSV+ + + L TP + ++ + ++ EP ++P R + +
Sbjct: 292 SQS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNA 350
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V + G TIV+ G+ + + +P +P +G LFR +++E+ + TP +
Sbjct: 351 KVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 410
>gi|317484811|ref|ZP_07943707.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6]
gi|316923941|gb|EFV45131.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6]
Length = 665
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 83/463 (17%), Positives = 150/463 (32%), Gaps = 71/463 (15%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEI-GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
+ A P + +A A + + + G + + L T A
Sbjct: 182 TLALTAPAPNVAKAMAFLEQVEASDTAGTSATLGLQYGDSKTLA------------ATLA 229
Query: 78 DVVVHSPRTMYLFGKNVGQA-NVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSN 135
++ + K +++L +L D +L
Sbjct: 230 KILKSRDEE---YAKKGRPTVSLVLADERTNSLLIYGDPEAIGMARDAVGSLDIPTPKGK 286
Query: 136 IRVE----MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
V + L ++ T+ + QRA E + ++ + K N L +
Sbjct: 287 GDVHLISLSNAKAEDLAQVINTLVERQRAAGT-EDQKPDTVLSKDIKVVADKSTNSLVVT 345
Query: 192 GE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
QV ++ I EV + G +I G++ +
Sbjct: 346 ARPDEFEALSNIVAKLDVVRKQVFIEALIMEVSSEASFSFGINWAIGGNTGDAAIVGGVS 405
Query: 234 FGGKFVSEGGDFS-------------------VKGVLDRFSFETVLHALERATAIRTLAE 274
G VS + + ++ +++L+A+ + + LA
Sbjct: 406 LNGGAVSLSSSGANKTVSLPAGVSIGAILKDAITVGNTSYNIQSILNAVRGNSDVDVLAT 465
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIG 329
P L + + AS + S++ T D GV L TP + G +
Sbjct: 466 PQLLTLDNEEASVEVVDNIPFTKESTTRNDNDFTTQSMDYKDVGVKLKITPRISDDGSLR 525
Query: 330 LRIQTEVSEPVIG----VNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
L ++ EVS G N + P+ R R TT+ L T V+ GLL D +
Sbjct: 526 LEVEQEVSRVTQGLITLTNGDQLVAPTTRKRLVKTTILLQDSQTAVIGGLLDDQKTYNQS 585
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+P L IP+LG LF++ +T +FI TP +++ A
Sbjct: 586 EVPGLGSIPVLGWLFKSRNKKSTQTNLFIFITPKVIRNAADSA 628
>gi|240949528|ref|ZP_04753868.1| type II secretory pathway, component HofQ [Actinobacillus minor
NM305]
gi|240296101|gb|EER46762.1| type II secretory pathway, component HofQ [Actinobacillus minor
NM305]
Length = 443
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 48/272 (17%), Positives = 103/272 (37%), Gaps = 21/272 (7%)
Query: 178 NSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSI----------TGS 222
+ + N++++ +Q+ ++ I + + L ++G + + G+
Sbjct: 162 KDNPSSIKNMISLIKELDKPTEQIAIEARIVTISSENLHELGVRWGMLSPNASHSRLGGT 221
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G + F GG +V ++ + L ALE+ ++ +A P L
Sbjct: 222 LEGNGVDSTKNLNVNFPVSGGASAVLQVASINSKVLDLELSALEQENSVEIIASPRLLTT 281
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-- 338
+ + AS G + Y + V + + L TP + +I + + +
Sbjct: 282 NKKLASIKQGTEIPYAIYDRKSETYDVEFKEAVLGLQVTPHISKDNQILMDLVVTQNSQG 341
Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
V + S ++ +T V G TIVL G+ + + + +P+L IP L
Sbjct: 342 QSVVSSTSDNAAVSIDKQELNTQVFAKHGETIVLGGIFQHLKTKDSDRVPVLGSIPFLKH 401
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
LF + + E+ I TP++++ +
Sbjct: 402 LFSYQKDQISKRELVIFVTPYIIQANDINAQP 433
>gi|148360420|ref|YP_001251627.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str.
Corby]
gi|296106514|ref|YP_003618214.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99
Alcoy]
gi|148282193|gb|ABQ56281.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str.
Corby]
gi|295648415|gb|ADG24262.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99
Alcoy]
Length = 698
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 57/290 (19%), Positives = 111/290 (38%), Gaps = 28/290 (9%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
D + + T ++++ L+I + QV ++ I EV +D + IG
Sbjct: 394 SDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPVK-QVLIEARIVEVTKDFSQDIG 452
Query: 215 FQHSITGSSSGPSKSFAAD-------------------------FGGKFVSEGGDFSVKG 249
+ ++ + A+ ++
Sbjct: 453 IRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLNLDLAAAPLTGATPASVGIALAK 512
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
+ D + L ALE ++ P L + Q A+ G+ + ++S+GAT+V
Sbjct: 513 LNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAVIESGEEIPYQEATSSGATAVAF 571
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ L TP + G+I + +Q P +P+ ++ T V + +G TIV
Sbjct: 572 KKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLGVPAIITKEIQTNVLVNNGQTIV 630
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G+ K D ++ IP ++P++G LF N + + E+ I TP ++
Sbjct: 631 LGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680
>gi|325206729|gb|ADZ02182.1| type IV pilus secretin PilQ [Neisseria meningitidis M04-240196]
Length = 761
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D + S+ + + L A E + +TLA P + + +
Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751
>gi|224368244|ref|YP_002602407.1| GspD1 [Desulfobacterium autotrophicum HRM2]
gi|223690960|gb|ACN14243.1| GspD1 [Desulfobacterium autotrophicum HRM2]
Length = 653
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 71/355 (20%), Positives = 130/355 (36%), Gaps = 39/355 (10%)
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
G + + + L L L+ V+ + + I D + +
Sbjct: 279 RGDEKIRVYYLEHATAEDLAKVLQEMP------VKKSAQSTEGKKTAPVISDMVKIMADK 332
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
T + ++V++ L+I V ++ I EV + ++G Q I
Sbjct: 333 ATNSLIIMAEKEDYPVLEEVIHKLDIP-RAMVYIECLIMEVNVESGFELGTQWQIGDGYD 391
Query: 225 GPS---------KSFAADFGGKFVSEGGDFSVKGVLDR-------------FSFETVLHA 262
S SF GG F S G + V+ A
Sbjct: 392 TDSDGNDQGVYFGSFKGSDGGSFTSAAAGGLGSGFSAGIMGKSITIGGVSFPTLGAVIQA 451
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------STGATSVTTHDYGV 314
+ L+ P + + A+ T G Y+T SS ++ S D G+
Sbjct: 452 YQSDKDSHILSTPQILTTDNEEATLTIGKNVPYQTRSSVDNDTTLTTSSYNSYEYKDVGI 511
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGL 373
L TP + + L + E+++ + + D P+ RK +TT+ + G T+V+ GL
Sbjct: 512 TLKITPQISKDRLVRLNVYQEITKLDSSASQSTDRPTTLKRKIETTLIVEDGNTVVIGGL 571
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDL 427
+ + + + +P L IP L LF+ + E+T +++ TP +VK P+ +L
Sbjct: 572 IDETLSSSEYKVPCLGDIPGLSYLFKTTSTGDEKTNLYVFLTPRVVKNPLEASEL 626
>gi|56461126|ref|YP_156407.1| Type II secretory pathway, component PulD [Idiomarina loihiensis
L2TR]
gi|56180136|gb|AAV82858.1| Type II secretory pathway, component PulD [Idiomarina loihiensis
L2TR]
Length = 708
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 57/284 (20%), Positives = 103/284 (36%), Gaps = 48/284 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+KV+ L+I QV ++ I E+ G Q + G +
Sbjct: 342 EKVIRDLDIR-RAQVQVEAIIVEIMEGDNVDFGVQWISEDGGMVQYNNGNQVPIGSLAAG 400
Query: 242 ----------------------------------------GGDFSVKGVLDRFSFETVLH 261
G + + + V+
Sbjct: 401 AYQAREREGTTTTRITDGGVEVTTTEPDEPGDVSLLANLLGSVNGMMFGTIQNDWAAVVQ 460
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVL 316
A+ + T LA P++ + + ASF G + + S++ +V + G+ L
Sbjct: 461 AVTQDTRSNILATPSIVTVDNEEASFLVGQEVPTISGSTTGDNNDNPFQTVDRTEIGIKL 520
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
TP + + + I+ EVS + R+ TTV G TIVL GL+ +
Sbjct: 521 KVTPQINEGDAVQMTIEQEVSSLSGATAVDVI--INKRELKTTVMADDGETIVLGGLIDE 578
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
D+Q+ +PLL IPILG LF ++ ++++ + + P +V+
Sbjct: 579 DVQESVSKVPLLGDIPILGKLFSSTSTSKQKRNLMVFIRPTIVR 622
>gi|212217864|ref|YP_002304651.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii
CbuK_Q154]
gi|212012126|gb|ACJ19506.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii
CbuK_Q154]
Length = 353
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 4/246 (1%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ +++ L+I QV +K I + L +G +++ + D +
Sbjct: 94 QSLVSQLDIPI-HQVLIKARIISISDHNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQF 152
Query: 242 G-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G D + + + L ALE+ + L+ P L + Q+A G+ + +
Sbjct: 153 GVADIPIIKFKNGQLLDLTLSALEQEGRAQVLSCPELMTNNRQTA-IIESGEAIPYQEKT 211
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
G TSVT + + L TP VL RI L++ + + +P+ + ++ T V
Sbjct: 212 GQGNTSVTFNKATLRLKVTPVVLPGNRILLQLNVNQDKMSSFL-VNGVPTIQTQQLTTKV 270
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + T+VL G+ + QQ + GIP L KIPILG LFR+ + + E ++ I TP ++
Sbjct: 271 MVNNQETVVLGGIYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIIS 330
Query: 421 PVAMRD 426
P +
Sbjct: 331 PYEKKS 336
>gi|167625988|ref|YP_001676282.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4]
gi|167356010|gb|ABZ78623.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4]
Length = 688
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 65/307 (21%), Positives = 120/307 (39%), Gaps = 28/307 (9%)
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQ 195
+ +L G ++ ++ ++ + + + + + V L+ + Q
Sbjct: 381 AKAKDIAALLKGEDSSLLTAR--GSVAVDERTNTLLVKDTEETLENVHRLIEVLDIPIKQ 438
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------- 241
V ++ + V+ D+ + +G + +T S + + G +
Sbjct: 439 VLIEARMVTVKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNLP 498
Query: 242 -------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
F V + D + L ALE+ +A P +T S Q A++ G +
Sbjct: 499 AAVANPTSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEI 557
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYR 352
+SS+GAT+VT + L TP + R+ L ++ V+ G S
Sbjct: 558 PYVEASSSGATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSID 617
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
++ T V + G TIVL G+ + + +P+L IP LG +FRNS E E+ I
Sbjct: 618 TQRIGTQVLVDHGETIVLGGIYQQQLITKVSKVPILGDIPYLGFMFRNSSDKNERQELLI 677
Query: 413 AATPFLV 419
TP +V
Sbjct: 678 FVTPKIV 684
>gi|312882862|ref|ZP_07742594.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369381|gb|EFP96901.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 674
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 56/319 (17%), Positives = 116/319 (36%), Gaps = 48/319 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKVTIAE 204
G +T + V ++ + + + + V+ L+I QV ++ I E
Sbjct: 296 SGTKKTQGSKRGDVVIAAHVETNALVLTAPPDIMIALQDVIAQLDIR-RAQVLIEALIVE 354
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237
+ +G Q S + + + G+
Sbjct: 355 MAEGDGINLGVQWGSLESGASIQFANSGTPIGQVMVGVEEAKEQTSTEYYTDKDGNRQPY 414
Query: 238 -----------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ G + + ++ A+ + L+ P++T + AS
Sbjct: 415 NVTKPGDYSTLASALGSVNGAALSVVMGDWMALISAVSTDSNSNILSSPSITVMDNGEAS 474
Query: 287 FTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
F G + T ++ +V + G+ L P + + L+I+ EVS +
Sbjct: 475 FIVGEEVPVITGSAAGSNNENPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSNVLG 534
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
A D+ + R+ +T+V + G IVL GL+ + + + +PLL IP LG LF+++
Sbjct: 535 ANGAVDV-RFAKRQLNTSVMVEDGQMIVLGGLIDERALESESKVPLLGDIPYLGHLFKST 593
Query: 402 RFNREETEIFIAATPFLVK 420
R E+ + + P +++
Sbjct: 594 RTQVEKKNLMVFIKPTIIR 612
>gi|262166650|ref|ZP_06034387.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223]
gi|262026366|gb|EEY45034.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223]
Length = 545
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 59/309 (19%), Positives = 115/309 (37%), Gaps = 28/309 (9%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ ++ + G V + + T + ++++ L+I + QV
Sbjct: 237 KASDIAAMIGGEGNVNMLSERGTISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 295
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232
++ I V+ L ++G + + ++ S
Sbjct: 296 QIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVN 355
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ F V + + L AL+ + ++ P L + Q A G +
Sbjct: 356 LAAASTNASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 415
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350
Y SS+GAT+V+ + L TP + R+ L + + G+ S
Sbjct: 416 IPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 474
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++ T V + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+
Sbjct: 475 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 534
Query: 411 FIAATPFLV 419
I TP +V
Sbjct: 535 LIFVTPKVV 543
>gi|332701375|ref|ZP_08421463.1| general secretion pathway protein D [Desulfovibrio africanus str.
Walvis Bay]
gi|332551524|gb|EGJ48568.1| general secretion pathway protein D [Desulfovibrio africanus str.
Walvis Bay]
Length = 746
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 64/316 (20%), Positives = 116/316 (36%), Gaps = 22/316 (6%)
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
+ + + R + T L G V + D L+
Sbjct: 421 IGQQIAQQREAPQARQRDTNITGELTGEVVFVVDVTTNSILTRANSDDYRTVLS------ 474
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
V+ L+I QV ++V IAEV Q+G +G + +
Sbjct: 475 -VIEKLDI-YPKQVLIEVIIAEVSLTDETQLGIDWRYLLDMTGNASIDFSLSNNPSTFTS 532
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------- 294
G + ++D L AL + + L+ P + + + A G +
Sbjct: 533 GLAAT--LVDGDRLRATLRALASSNRTQILSSPHILSSNHSEAKIDVGQEVPILTQTTET 590
Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPS 350
+ S+ ++ + G++L TP + G + + I E+S V A + P
Sbjct: 591 VDTTDPDNVSSVQQNIQYRNTGILLSVTPHINERGLVRMEISQEISSIEETSVGAINSPL 650
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R R A TTV + TIV+ GL++ + + +P + +IP+L LF + + E+
Sbjct: 651 FRKRLATTTVVVNDEQTIVIGGLMEQENTDNENNVPFVRRIPLLKYLFGYELKSFDNREL 710
Query: 411 FIAATPFLVKPVAMRD 426
I TP +V+ D
Sbjct: 711 LIFITPHVVESREDND 726
>gi|229507318|ref|ZP_04396823.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286]
gi|229509758|ref|ZP_04399239.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33]
gi|229513553|ref|ZP_04403017.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21]
gi|229516883|ref|ZP_04406329.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9]
gi|229521696|ref|ZP_04411114.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80]
gi|229606824|ref|YP_002877472.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236]
gi|262158485|ref|ZP_06029600.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1]
gi|262170121|ref|ZP_06037810.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27]
gi|229341290|gb|EEO06294.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80]
gi|229345946|gb|EEO10918.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9]
gi|229349430|gb|EEO14386.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21]
gi|229353232|gb|EEO18171.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33]
gi|229354823|gb|EEO19744.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286]
gi|229369479|gb|ACQ59902.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236]
gi|262021529|gb|EEY40241.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27]
gi|262029646|gb|EEY48295.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1]
Length = 571
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 70/419 (16%), Positives = 142/419 (33%), Gaps = 43/419 (10%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
+ I ++ ++ ++ + V Q VL V R
Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+ G + +I + + R L I + + ++ +
Sbjct: 219 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + T + ++++ L+I + QV ++ I V+
Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 331
Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
L+++G + + ++ S + +
Sbjct: 332 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 391
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F V + + L AL+ + ++ P L + Q A G + Y SS+
Sbjct: 392 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 450
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
GA++V + L TP + R+ L + + G+ S ++ T V
Sbjct: 451 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V
Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569
>gi|229577502|ref|YP_001178510.2| outer membrane porin HofQ [Enterobacter sp. 638]
Length = 413
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 5/231 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
QV L+ I + L+++G + ++ + + G V G +
Sbjct: 181 QVQLEAHIVTINEKSLRELGVKWNLAEAQGAGAPGQVTTMGADLSVANATTHVGFNIGRI 240
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
D + L ALE+ + +A P L A Q AS G + Y+ S +GATSV +
Sbjct: 241 DGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGATSVEFKE 300
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ + TP VL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+
Sbjct: 301 AVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEVKSGETLA 360
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L G+ + + +P L +P+LG FR+ + E E+ + TP L+
Sbjct: 361 LGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLID 411
>gi|120553763|ref|YP_958114.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8]
gi|120323612|gb|ABM17927.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8]
Length = 704
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 62/332 (18%), Positives = 129/332 (38%), Gaps = 40/332 (12%)
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--- 181
T ++ + +R++++ V + + + S F+S R +
Sbjct: 372 ETNKQIAELAPVRLDIIQVNYAKAADVVALIQADEELISSRGFVSSDARTNTISVRETAE 431
Query: 182 -----KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------------- 220
+++++ ++ QV+++ I + ++ + +G +
Sbjct: 432 KLEEIRRLVSTWDVPVR-QVSIEARIVRAQTNVAEDLGVRWGGAAYNVDGDDVITVGGSL 490
Query: 221 ------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
GS++ G F++ D F + L ALE
Sbjct: 491 GTLQEARDAASGGSNTISFPGALGVDLGVSGDGASSFAIGWGSDDFLVDLELSALESDGR 550
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+++P + Q+AS SG + Y+ +SS GAT++ + + L TP + +I
Sbjct: 551 AEVVSQPRVVTADRQTASIKSGEEIPYQEATSS-GATNIEFKEAVLSLEVTPQITPDDKI 609
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ + V++ G +PS + T V + +G T+VL G+ + ++ P L
Sbjct: 610 IMDLV--VNQDSRGEVTAGIPSINTNEVTTQVLVANGETVVLGGIFQSEVATQTTKTPFL 667
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP LG LF+ + E +E+ I TP ++K
Sbjct: 668 GDIPYLGRLFKRTEHIDERSELLIFITPKIIK 699
>gi|145320312|gb|ABP62459.1| type IV pilus secretin PilQ [Enterobacter sp. 638]
Length = 373
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 5/231 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
QV L+ I + L+++G + ++ + + G V G +
Sbjct: 141 QVQLEAHIVTINEKSLRELGVKWNLAEAQGAGAPGQVTTMGADLSVANATTHVGFNIGRI 200
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
D + L ALE+ + +A P L A Q AS G + Y+ S +GATSV +
Sbjct: 201 DGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGATSVEFKE 260
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ + TP VL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+
Sbjct: 261 AVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEVKSGETLA 320
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L G+ + + +P L +P+LG FR+ + E E+ + TP L+
Sbjct: 321 LGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLID 371
>gi|255320952|ref|ZP_05362125.1| general secretion pathway protein D [Acinetobacter radioresistens
SK82]
gi|262379956|ref|ZP_06073111.1| general secretion pathway protein D [Acinetobacter radioresistens
SH164]
gi|255301916|gb|EET81160.1| general secretion pathway protein D [Acinetobacter radioresistens
SK82]
gi|262298150|gb|EEY86064.1| general secretion pathway protein D [Acinetobacter radioresistens
SH164]
Length = 751
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 60/268 (22%), Positives = 99/268 (36%), Gaps = 31/268 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L+I QV ++ I EV D Q+G Q ++ SSG + G S
Sbjct: 377 ESAIQQLDIR-RQQVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLVNFTNVGSSLASL 435
Query: 242 GGDFSVKGV------------------------LDRFSFETVLHALERATAIRTLAEPTL 277
+ G R + ++ AL+ T L+ P++
Sbjct: 436 AAGYLAGGSALANAASNLRGSSLLLGDYREGADGSRRLYGALIQALKDNTKSNLLSTPSI 495
Query: 278 TAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+ + A G + T S + T+V D GV L P + G + L
Sbjct: 496 VTMDNEEAYIVVGQNVPFVTGSVTTNANGVNPYTTVERKDVGVTLKVIPHIGENGTVRLE 555
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
++ EVS R T V G T+VL GL+ D+ ++ +P L I
Sbjct: 556 VEQEVSNVQPNKGQATDLVTSKRAIKTAVLAEHGQTVVLGGLISDNSIYSRQAVPGLGAI 615
Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
P +G LFR+ + E+ + + P +V
Sbjct: 616 PGIGRLFRSDSNSNEKRNLLVFIHPTIV 643
>gi|325131459|gb|EGC54166.1| type IV pilus secretin PilQ [Neisseria meningitidis M6190]
gi|325137566|gb|EGC60147.1| type IV pilus secretin PilQ [Neisseria meningitidis ES14902]
gi|325197687|gb|ADY93143.1| type IV pilus secretin PilQ [Neisseria meningitidis G2136]
gi|325201543|gb|ADY96997.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240149]
gi|325207524|gb|ADZ02976.1| type IV pilus secretin PilQ [Neisseria meningitidis NZ-05/33]
Length = 769
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 504 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 562
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D + S+ + + L A E + +TLA P + + +
Sbjct: 563 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 622
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 623 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 682
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 683 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 742
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 743 GKKTDRRELLIFITPRI 759
>gi|254804373|ref|YP_003082594.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis
alpha14]
gi|304388332|ref|ZP_07370446.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091]
gi|254667915|emb|CBA04080.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis
alpha14]
gi|254670030|emb|CBA04815.1| fimbrial assembly protein [Neisseria meningitidis alpha153]
gi|261393150|emb|CAX50762.1| type IV pilus secretin PilQ [Neisseria meningitidis 8013]
gi|304337694|gb|EFM03849.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091]
gi|325133588|gb|EGC56249.1| type IV pilus secretin PilQ [Neisseria meningitidis M13399]
gi|325141680|gb|EGC64140.1| type IV pilus secretin PilQ [Neisseria meningitidis 961-5945]
Length = 761
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D + S+ + + L A E + +TLA P + + +
Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751
>gi|227327883|ref|ZP_03831907.1| general secretion pathway protein D [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 684
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 69/367 (18%), Positives = 133/367 (36%), Gaps = 43/367 (11%)
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLH 148
ANV+ ++ + + + + L R+ N +V +D V VL
Sbjct: 253 TANVVADERTNSVLVRGEPNSRQRVIDMVKQLDRQQAVQGNTKVIYLKYAKATDLVEVLT 312
Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
G+ +IQ Q+ + +T ++V+ L+I QV
Sbjct: 313 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 371
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240
++ IAEV+ +G Q + + + +
Sbjct: 372 VEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATTA 431
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296
GG + + ++ +L AL + + LA P++ + A+F G + +
Sbjct: 432 LGGFNGIAAGFYQGNWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 491
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRV 353
T S +V G+ L P + + L I+ EVS + ++
Sbjct: 492 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGATFNT 551
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + +
Sbjct: 552 RTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNLMLF 611
Query: 414 ATPFLVK 420
P +++
Sbjct: 612 IRPSIIR 618
>gi|325135596|gb|EGC58213.1| type IV pilus secretin PilQ [Neisseria meningitidis M0579]
Length = 761
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D + S+ + + L A E + +TLA P + + +
Sbjct: 555 DDKWEAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751
>gi|123443548|ref|YP_001007521.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090509|emb|CAL13378.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 648
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 51/263 (19%), Positives = 100/263 (38%), Gaps = 12/263 (4%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227
+ +V+ L++ QV ++ I E + +G Q +
Sbjct: 330 TADPKVMKELDQVIERLDVR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGANFLQKP 388
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
S + + + +++ + AL + LA P++ + A F
Sbjct: 389 NSIQTNNNSGNPIPMMIAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEF 448
Query: 288 TSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
G + T + +T S++ GV+L P + + L I+ EVS
Sbjct: 449 NVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSS 508
Query: 344 NAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ + R + V + SG T+V+ GLL I ++ +PLL IP +G LFR
Sbjct: 509 DVNANNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQ 568
Query: 401 SRFNREETEIFIAATPFLVKPVA 423
S+ E++ + + P +++ +
Sbjct: 569 SKEKIEKSNLILFIRPTILRETS 591
>gi|299065464|emb|CBJ36633.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CMR15]
Length = 714
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231
QV ++ I E + +G + S+G
Sbjct: 462 RQVMIEARIVEADDTFSRNLGAKLGFAAKSNGSGVGNTYSNVVSPVTQNGTWDNSAAVSL 521
Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
A+ + S+ L ALE + ++ P + A G
Sbjct: 522 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 581
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
+ Y+ +SS GATSV+ + L TP + G + L +V++ +G + +
Sbjct: 582 TEVPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNVFLD--VDVNKDSLGTQTTNGFA 638
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ T V + +GGT+V+ G+ + + IPLL IP+LG LF+++ + TE+
Sbjct: 639 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKIPLLGDIPVLGNLFKSTAKTNDRTEL 698
Query: 411 FIAATPFLV 419
+ TP ++
Sbjct: 699 LVFLTPRVL 707
>gi|262280702|ref|ZP_06058485.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
gi|262257602|gb|EEY76337.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
Length = 758
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 65/269 (24%), Positives = 106/269 (39%), Gaps = 32/269 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
+ + L+I QV ++ I EV D Q+G Q ++ SSG ++ G S
Sbjct: 382 ESAIQQLDIR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440
Query: 241 -----------------------EGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPT 276
G F+V + ++ ++ AL+ T L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIAGGANKGNGATFAVGNFENSRKAYGALIQALKANTKSNLLSTPS 500
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + + A G + T S + T+V D GV L P + G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++ EVS R T V G T+VL GL+ DD++ ++GIP LS
Sbjct: 561 EVEQEVSNVQTSKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVELSRQGIPGLSS 620
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
IP LG LFR+ + + + + P +V
Sbjct: 621 IPYLGRLFRSDSRSNTKRNLLVFIHPTIV 649
>gi|70733953|ref|YP_257593.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens
Pf-5]
gi|68348252|gb|AAY95858.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens
Pf-5]
Length = 583
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 51/257 (19%), Positives = 104/257 (40%), Gaps = 23/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241
+++ L++ QV ++ I E D K +G + + + G + S
Sbjct: 319 RIVAQLDVPVR-QVMIEARIVEANVDYDKSLGVRWGGSVQNQGNWSASGVQNAASGSSSI 377
Query: 242 --------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ + D + L A+E+ +++P +
Sbjct: 378 GAPGSGGSNSPFVDLGASAHTSGIGIAYITDNVLLDLELTAMEKTGNGEIVSQPKVVTSD 437
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
++A G + Y+ SS+GATSV+ + + L TP + RI + ++ EP
Sbjct: 438 KETAKILKGTEIPYQEA-SSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 496
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
D+P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR
Sbjct: 497 LNKVQDVPPIKKNEVNAKVLVNDGATIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 556
Query: 402 RFNREETEIFIAATPFL 418
+ +++E+ + TP +
Sbjct: 557 VVSEKKSELLVFLTPRI 573
>gi|332308478|ref|YP_004436329.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175807|gb|AEE25061.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 552
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 23/251 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
QV L+ I EV Q G S ++SG + S + G +S
Sbjct: 281 RQVILEARILEVSLSDGYQQGINWSEILANSGSTDFQFSTTSGSLGDAISATLGGVTSLS 340
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302
F VL+ L+ ++ L+ P +TAI+ Q A G + T SS
Sbjct: 341 FVNKDFSGVLNLLQTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSESTVTAATA 400
Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PS 350
+T G+ L TP + + G + L + V E + +
Sbjct: 401 STTPNIELTPFFSGIALDVTPQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLAA 460
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R++DT + SG +V+ GL++ I + + PLL IP+LG LF+N + + + E+
Sbjct: 461 SNIRESDTIIHARSGEIVVIGGLMQSIISETESKTPLLGDIPLLGNLFKNRQESEIKKEL 520
Query: 411 FIAATPFLVKP 421
I P +V
Sbjct: 521 VILLRPTVVSA 531
>gi|327395552|dbj|BAK12974.1| protein transport protein HofQ precursor HofQ [Pantoea ananatis
AJ13355]
Length = 430
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 56/258 (21%), Positives = 108/258 (41%), Gaps = 7/258 (2%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230
+ A + + + L++ +QV L I + + L ++G + +++
Sbjct: 164 DSPAALEETARWIGALDVPL-EQVELAAHIVTISEEHLHELGVNWRLYNEGDVINRALRH 222
Query: 231 --AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
G + + + L ALE+ + +A P L Q+AS
Sbjct: 223 PLLDISLGLNSHDVSVGVTLSRIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIK 282
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI--QTEVSEPVIGVNAG 346
G + Y+ + ++GATS+ + + + TP VL GRI L+I V +
Sbjct: 283 QGTEIPYEVSAGNSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDS 342
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ S ++ +T V + G T+ L G+ + + +PLL +P++G+LFR +
Sbjct: 343 QVLSIDKQEIETQVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQR 402
Query: 407 ETEIFIAATPFLVKPVAM 424
+ E+ I TP LV+ +
Sbjct: 403 KRELVIFMTPRLVQGSSA 420
>gi|262189810|ref|ZP_06048151.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93]
gi|262034306|gb|EEY52705.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93]
Length = 571
Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats.
Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
+ I ++ ++ ++ + V Q VL V R
Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+ G + +I + + R L I + + ++ +
Sbjct: 219 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + T + ++++ L+I + QV ++ I V+
Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 331
Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
L+++G + + ++ S +
Sbjct: 332 EGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGLLADDEFPVDEFLNVNLASTSANASS 391
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F V + + L AL+ + ++ P L + Q A G + Y SS+
Sbjct: 392 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 450
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
GA++V + L TP + R+ L + + G+ S ++ T V
Sbjct: 451 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V
Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569
>gi|332160534|ref|YP_004297111.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325664764|gb|ADZ41408.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 648
Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats.
Identities = 52/263 (19%), Positives = 101/263 (38%), Gaps = 12/263 (4%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----S 227
+ +V+ L+I QV ++ I E + +G Q + +
Sbjct: 330 TADPKVMKELDQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKT 388
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
S + + + +++ + AL + LA P++ + A F
Sbjct: 389 NSIQTNNNSGNPIPMMMAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEF 448
Query: 288 TSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
G + T + +T S++ GV+L P + + L I+ EVS
Sbjct: 449 NVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSS 508
Query: 344 NAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ + R + V + SG T+V+ GLL I ++ +PLL IP +G LFR
Sbjct: 509 DVNANNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQ 568
Query: 401 SRFNREETEIFIAATPFLVKPVA 423
S+ E++ + + P +++ +
Sbjct: 569 SKEKIEKSNLILFIRPTILRETS 591
>gi|325143815|gb|EGC66131.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240013]
Length = 801
Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats.
Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 536 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 594
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D + S+ + + L A E + +TLA P + + +
Sbjct: 595 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 654
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 655 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 714
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 715 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 774
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 775 GKKTDRRELLIFITPRI 791
>gi|319409865|emb|CBY90178.1| type IV pilus secretin PilQ [Neisseria meningitidis WUE 2594]
Length = 761
Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats.
Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D + S+ + + L A E + +TLA P + + +
Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751
>gi|308389910|gb|ADO32230.1| pilQ protein [Neisseria meningitidis alpha710]
Length = 761
Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats.
Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D + S+ + + L A E + +TLA P + + +
Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751
>gi|153206247|ref|ZP_01945510.1| bacterial type II and III secretion system family protein [Coxiella
burnetii 'MSU Goat Q177']
gi|165919273|ref|ZP_02219359.1| bacterial type II and III secretion system family protein [Coxiella
burnetii RSA 334]
gi|120577377|gb|EAX34001.1| bacterial type II and III secretion system family protein [Coxiella
burnetii 'MSU Goat Q177']
gi|165916996|gb|EDR35600.1| bacterial type II and III secretion system family protein [Coxiella
burnetii RSA 334]
Length = 349
Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats.
Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 4/246 (1%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ +++ L+I QV +K I + L +G +++ + D +
Sbjct: 90 QSLVSQLDIPI-HQVLIKARIISISDHNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQF 148
Query: 242 G-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G D + + + L ALE+ + L+ P L + Q+A G+ + +
Sbjct: 149 GVADIPIIKFKNGQLLDLTLSALEQEGRAQVLSCPELMTNNRQTA-IIESGEAIPYQEKT 207
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
G TSVT + + L TP VL RI L++ + + +P+ + ++ T V
Sbjct: 208 GQGNTSVTFNKATLRLKVTPVVLPGNRILLQLNVNQDKMSSFL-VNGVPTIQTQQLTTKV 266
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + T+VL G+ + QQ + GIP L KIPILG LFR+ + + E ++ I TP ++
Sbjct: 267 MVNNQETVVLGGIYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIIS 326
Query: 421 PVAMRD 426
P +
Sbjct: 327 PYEKKS 332
>gi|187925571|ref|YP_001897213.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN]
gi|187716765|gb|ACD17989.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN]
Length = 591
Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats.
Identities = 81/454 (17%), Positives = 154/454 (33%), Gaps = 49/454 (10%)
Query: 4 LQRTFFTMMSIFLFSSN----PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII 59
L+R F + P V P + +NA V K IS+ + +
Sbjct: 148 LRRQFAASARADATGTAALEGPPVPLPPLARLSNAPRSAADAVLAPDDKPISLNFQRAEL 207
Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV-ILIGHDGKQM-LNLDILIE 117
V A V ++ L K + L+ +G M + +++
Sbjct: 208 GAVLSAFAR-FTGLNIVASERVRGAVSLRLD-KVPWRTAFDTLLDVNGLAMERHGNVIWV 265
Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSG 172
IA L R+ E + L + + ++ L +Q
Sbjct: 266 APIADLAARERQRF-------EAHARAADLEPLASRTFELHYAHAEDVRRLLTGSGAQRV 318
Query: 173 RNQYANSSSKKVMNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIG 214
++ +++ NLL + QV ++ I E + +G
Sbjct: 319 LSKRGAATADPRTNLLFVTDLEGRLAQIAALLASVDRPTRQVLIEARIVEGEHGFSRNLG 378
Query: 215 FQHSITGSSSGPSKSFAADFG--------GKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ S+ +++ + D G F ++ L ALE
Sbjct: 379 VKLSMAATNADGTAKGLTDAGYDLSARPISGFDVATAGLTLFAAGATRLLNIELSALEAQ 438
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
++ P + A G + Y+ G + V + L P ++ G
Sbjct: 439 GRGEIVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQIMPDG 497
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
R+ L + +V++ +G P+ + T VE+ GGT+ + G+ D + +P
Sbjct: 498 RVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVEDGGTVSIGGIYATDDRDDVTRVP 555
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+L KIP+LGALFR+ + +E+ + TP +V+
Sbjct: 556 VLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 589
>gi|54310534|ref|YP_131554.1| putative type II secretory pathway, component EpsD [Photobacterium
profundum SS9]
gi|46914977|emb|CAG21752.1| putative type II secretory pathway, component EpsD [Photobacterium
profundum SS9]
Length = 670
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 69/384 (17%), Positives = 137/384 (35%), Gaps = 64/384 (16%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN----IRVEMVS--DTV-VLHGMV 151
V+ +L+ D + + + L L + +A S I ++ + D V VL G+
Sbjct: 227 VVADERTNAVLLSGDPQVRKRLRKLIHQLDKEMATSGNNRVIYLKYANAEDMVDVLKGVS 286
Query: 152 RTIQDSQR---------------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+Q ++ T + + ++ L+I QV
Sbjct: 287 DNLQSEKQGASKTPVGSNKSTVMISAHVGTNALIVTAPPDIMRALESIIAQLDIR-RAQV 345
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
++ I E+ G Q+ +
Sbjct: 346 LIEAMIVELSEGDGINFGVQYGSADGGVIQFGNSNVPISQYAIGLQEAQDVPGSTVINSD 405
Query: 232 ----------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
DF GG + + +++A+ + L+ P++T +
Sbjct: 406 GTTTINEATQGDFSTLASVLGGVNGAALGIVMGDWTMLVNAVATDSNSNILSSPSITVLD 465
Query: 282 GQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
ASF G + T S+ +V + G+ L+ TP + + L+I+ EV
Sbjct: 466 NSEASFIVGEEVPVVTGSTSSSSNDNPFQTVERKEVGIKLNVTPQINEGDSVQLKIEQEV 525
Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
S + A D+ + R+ +TTV + G I L GL+ ++ ++ + IP+L IP LG
Sbjct: 526 SSVLGASGAVDV-RFAKRQINTTVLVKDGQMIALGGLISEETKESESKIPILGDIPFLGF 584
Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
LF+++ +T + + P +++
Sbjct: 585 LFKSTNTTTAKTNLMVFIKPTIIR 608
>gi|297581470|ref|ZP_06943393.1| fimbrial assembly protein [Vibrio cholerae RC385]
gi|297534308|gb|EFH73146.1| fimbrial assembly protein [Vibrio cholerae RC385]
Length = 578
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
+ I ++ ++ ++ + V Q VL V R
Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+ G + +I + + R L I + + ++ +
Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + T + ++++ L+I + QV ++ I V+
Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPNNIAVIREIIESLDIPVK-QVQIEARIVTVK 338
Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
L+++G + + ++ S +
Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGLLADDEFPVDEFLNVNLASTSANASS 398
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F V + + L AL+ + ++ P L + Q A G + Y SS+
Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
GA++V + L TP + R+ L + + G+ S ++ T V
Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V
Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576
>gi|313895052|ref|ZP_07828609.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975947|gb|EFR41405.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 426
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 81/430 (18%), Positives = 164/430 (38%), Gaps = 19/430 (4%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
++R ++ + P + + + + + + + ++ + V
Sbjct: 1 MKRFVIMGLACLALLVPARLYAAPVTIDVTGGDVRTVLLAVARMGNVPLIVDDGVTGAVT 60
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
+ +P + ++ + R +++ + + + +++ + D A L
Sbjct: 61 AHLT----GEPEELLHLIAAARGIHIERRGDVFLALGAEARTENRRVHIYPVRFADPAEL 116
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ R M V +R + + T + + ++
Sbjct: 117 AYAANLSLGGEGKRGNMSKTNDESGNEVSASDTGRRVLVDTATNTLLFYGTEAEAFAVRE 176
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
+++ L++ QV+L+ + V + KQ+G + + PS G+ G
Sbjct: 177 IISALDVK-PRQVSLEARVVSVSKAAAKQLGVDWTWSALPQYPSVDAGGRVTGRSTGGGR 235
Query: 244 -----------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
GV F + + AL + LA P +T + G+ A G +
Sbjct: 236 TGTSAPGIIRFGRGPAGVPYEFYYSAAISALITDGKAKMLARPNVTTVQGREALINIGAE 295
Query: 293 HLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
+ S +++ + G++L +TP V + G I R+ TEVS PV V
Sbjct: 296 VPVPRTTMSDHVTTSAIDYREAGIILRYTPRVTADGTITARVHTEVSTPVY-VEELKAYR 354
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++ R ADTTV L G T+V+ GL+ D + IP L +P+LGA FR+ R N+ E+E+
Sbjct: 355 FQKRSADTTVRLRDGETMVIGGLIDSDESRSLSKIPFLGDLPVLGAFFRSVRTNKTESEL 414
Query: 411 FIAATPFLVK 420
I T ++
Sbjct: 415 MIFLTARVLD 424
>gi|94312199|ref|YP_585409.1| type II and III secretion system protein [Cupriavidus metallidurans
CH34]
gi|93356051|gb|ABF10140.1| pili assembly protein PilQ [Cupriavidus metallidurans CH34]
Length = 710
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 22/245 (8%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVS----- 240
QV ++ I E + +G + S+ G S A + G +S
Sbjct: 462 RQVIIEARIVEASDTFSRNLGVKLGFALPKSGSSLSSNYGNSLPNATNDGTPALSLPAAA 521
Query: 241 ------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
FS+ + L ALE + ++ P + + A G +
Sbjct: 522 INSVNPATAAFSIFNAAAGRFLDLELSALEADGKGKIISSPRVVTANNIKALIEQGTELP 581
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
Y++ +SS GATSV + L TP + G + L +V++ +G+ + + +
Sbjct: 582 YQSATSS-GATSVQFRKANLKLEVTPQITPEGNVLLD--VDVNKDSVGIRTDNGFAIDTK 638
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T V + +GGT+V+ G+ + +P L +P+LG F+N+ TE+ +
Sbjct: 639 HVQTQVLVENGGTVVIGGIYSQEESNTVNKVPWLGDLPVLGNFFKNNAKVNNRTELLVFL 698
Query: 415 TPFLV 419
TP ++
Sbjct: 699 TPRVL 703
>gi|316984411|gb|EFV63384.1| type IV pilus secretin PilQ family protein [Neisseria meningitidis
H44/76]
gi|325200874|gb|ADY96329.1| type IV pilus secretin PilQ [Neisseria meningitidis H44/76]
Length = 777
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGG 236
K+++ L++ QV ++ I E + +G + TG +S + FGG
Sbjct: 512 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 570
Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ S+ + + L A E + +TLA P + + +
Sbjct: 571 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 630
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 631 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 690
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 691 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 750
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 751 GKKTDRRELLIFITPRI 767
>gi|15678016|ref|NP_274809.1| pilQ protein [Neisseria meningitidis MC58]
gi|62287061|sp|Q70M91|PILQ_NEIMB RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
Flags: Precursor
gi|66731938|gb|AAY52170.1| pilQ protein [Neisseria meningitidis MC58]
gi|325139633|gb|EGC62172.1| type IV pilus secretin PilQ [Neisseria meningitidis CU385]
Length = 769
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGG 236
K+++ L++ QV ++ I E + +G + TG +S + FGG
Sbjct: 504 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 562
Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ S+ + + L A E + +TLA P + + +
Sbjct: 563 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 622
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 623 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 682
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 683 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 742
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 743 GKKTDRRELLIFITPRI 759
>gi|308272100|emb|CBX28708.1| hypothetical protein N47_G40320 [uncultured Desulfobacterium sp.]
Length = 818
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 12/236 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV ++ I E ++IG S + S V+ + KG +
Sbjct: 580 TPQVVIEARIVEATTSFSREIGVIWSADAGPNSSSSLGGTYDLNAAVNFPTTAANKGTIG 639
Query: 253 ---------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F L A+E + ++ P + + + A+ G ++ Y ++G
Sbjct: 640 FDFARINGSPFLLNAKLEAMEAQGEGKIVSAPKICTLDNKEATIKQGLRYPY-NKLDTSG 698
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
T+ D + L P V RI + I+ + + I +N S+ ++A+T + +
Sbjct: 699 NTTTVFEDVDLELKVKPHVTPDNRISMLIKIKKRDLGIFINDQQ--SFTNKEAETELLVN 756
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G T+V+ G++K IP LS+IPILG F++ + E+ I TP +V
Sbjct: 757 DGDTVVIGGIIKTSKNTGGSLIPGLSRIPILGWFFKSDTKTDNKEELLIFITPKIV 812
>gi|161869408|ref|YP_001598575.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442]
gi|218767605|ref|YP_002342117.1| pilus secretin [Neisseria meningitidis Z2491]
gi|62287129|sp|Q9JVW4|PILQ_NEIMA RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
Flags: Precursor
gi|121051613|emb|CAM07913.1| pilus secretin [Neisseria meningitidis Z2491]
gi|161594961|gb|ABX72621.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442]
gi|325129552|gb|EGC52376.1| type IV pilus secretin PilQ [Neisseria meningitidis OX99.30304]
Length = 761
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGG 236
K+++ L++ QV ++ I E + +G + TG +S + FGG
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554
Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ S+ + + L A E + +TLA P + + +
Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751
>gi|71279149|ref|YP_267229.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea
34H]
gi|71144889|gb|AAZ25362.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea
34H]
Length = 706
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 62/315 (19%), Positives = 119/315 (37%), Gaps = 56/315 (17%)
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
++ V+ ++T+++ ++I+D +R + + L++
Sbjct: 415 GSVSVDERTNTLLIRDTAKSIEDIKRMITI------------------------LDVPVR 450
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT-----------------------------GSSS 224
QV ++ + V+ ++ +++G + +T G
Sbjct: 451 -QVVIEARMVTVKDNMNEELGIRWGVTNTDGEFATSGSIEGASSANGTRGVTTPGVGQVP 509
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ + F V + + + L ALE+ +A P +T + +
Sbjct: 510 TIGDGLNVNLPVANAAGTIAFQVARLANGTILDLELSALEKENKGEVIASPRITTANQKE 569
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
A G + Y+ +SS GAT+ + L TP + +I L + +
Sbjct: 570 AYIEQGVEIPYQEAASS-GATATQFKKAVLSLTVTPHITPDDKIILDLVVTQDTISDITS 628
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
P+ ++ T V + +G TIVL G+ + I IP+L IP LG LFRNS
Sbjct: 629 GF-APAIDTQRIGTQVLVNNGETIVLGGIYQQAIISTVSKIPILGDIPYLGWLFRNSSQL 687
Query: 405 REETEIFIAATPFLV 419
E+ E+ I TP +V
Sbjct: 688 NEKKELLIFVTPRIV 702
>gi|89256170|ref|YP_513532.1| Type IV pilin multimeric outer membrane protein [Francisella
tularensis subsp. holarctica LVS]
gi|115314642|ref|YP_763365.1| type IV pilus assembly protein [Francisella tularensis subsp.
holarctica OSU18]
gi|156502212|ref|YP_001428277.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|167010550|ref|ZP_02275481.1| type IV pilin multimeric outer membrane protein [Francisella
tularensis subsp. holarctica FSC200]
gi|290954188|ref|ZP_06558809.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
URFT1]
gi|295312388|ref|ZP_06803168.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
URFT1]
gi|89144001|emb|CAJ79239.1| Type IV pilin multimeric outer membrane protein [Francisella
tularensis subsp. holarctica LVS]
gi|115129541|gb|ABI82728.1| type IV pilus assembly protein [Francisella tularensis subsp.
holarctica OSU18]
gi|156252815|gb|ABU61321.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
FTNF002-00]
Length = 590
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 72/417 (17%), Positives = 148/417 (35%), Gaps = 36/417 (8%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
P A + + + +++ ++ + + +D+++V P ++V+ S
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
+ + + L + + L N + T
Sbjct: 236 G----LATKKMSSILYVATAAEIAAQEQLELQTKRLLENNAILVTEFIPLNYTTAQAAQT 291
Query: 145 VVLH-----GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
V+ G + + + S A + T + K+V+N ++I DQV ++
Sbjct: 292 VITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNDIDIPN-DQVLIE 348
Query: 200 VTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL---- 251
I EV R ++GF + + + G + + + G
Sbjct: 349 ARIVEVLRTSALELGFNYGVVDPSSRVNIGLYTFNSNPNPAPGPTPTPVDTFVGTTAKLA 408
Query: 252 ----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
E + ALE + +A P L + Q A F G+ + ++++GA +V
Sbjct: 409 YTIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAV 467
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVEL 362
+ + L TP + G I + I + P + R+ T V
Sbjct: 468 AFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVMT 527
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++
Sbjct: 528 KDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 584
>gi|238760627|ref|ZP_04621755.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
gi|238701160|gb|EEP93749.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
Length = 657
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 58/341 (17%), Positives = 116/341 (34%), Gaps = 19/341 (5%)
Query: 144 TVVLHGMVRTIQDSQRAVEL---SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
+ G + V + ++T ++V+ L+I QV ++
Sbjct: 307 QLAGKGQATPAVAMMKNVVIKADAQTNSLIINAAPDLLRDLEQVITQLDIR-RAQVLVEA 365
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFS 255
I EV+ +G Q A ++ G + R +
Sbjct: 366 IIVEVQDSDALNLGVQWFNRNGGGSNFPDTGASASSITPNDVGSSLKGVAGLATGFYRGN 425
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHD 311
+ + AL + LA P++ + A F+ G + T S +T +V +
Sbjct: 426 WSGLFTALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPILTGSQTTTGDNIFRTVDRKN 485
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTI 368
G+ L P + + L I+ EVS G ++ R V + S +
Sbjct: 486 VGIKLKVKPQINKGDSVLLEIEQEVSSVAEKAPGGTGDLGATFNTRMVKNAVMVGSNNIV 545
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RD 426
V+ GLL + +PLL IP +G LFR++ + + + P +++
Sbjct: 546 VVGGLLDSTSHDVTSKVPLLGDIPGIGFLFRSTSQKMVKRNLMLFIRPTILREQDSYIDA 605
Query: 427 LSRPDDHYSVEDDAKAFFFN-RVNKIYGPKEASEVEGQNYK 466
++ D + E + R+N+ + ++ +
Sbjct: 606 SNQRLDKFQQEQNTDRTTNGQRINQSLNKALSGGNSLRDLQ 646
>gi|193076133|gb|ABO10746.2| putative general secretion pathway protein [Acinetobacter baumannii
ATCC 17978]
Length = 758
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 32/269 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440
Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276
+ L +F+ ++ AL+ T L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + + A G + T S + T+V D GV L P + G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++ EVS R T V G T+VL GL+ DD ++GIP LS
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
IP +G LFR+ + + + + P +V
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649
>gi|169797464|ref|YP_001715257.1| putative general secretion pathway protein [Acinetobacter baumannii
AYE]
gi|184156612|ref|YP_001844951.1| Type II secretory pathway, component PulD [Acinetobacter baumannii
ACICU]
gi|213155722|ref|YP_002317767.1| general secretion pathway protein D [Acinetobacter baumannii
AB0057]
gi|215484901|ref|YP_002327140.1| general secretion pathway protein D [Acinetobacter baumannii
AB307-0294]
gi|301347975|ref|ZP_07228716.1| general secretion pathway protein D [Acinetobacter baumannii AB056]
gi|301510797|ref|ZP_07236034.1| general secretion pathway protein D [Acinetobacter baumannii AB058]
gi|301596692|ref|ZP_07241700.1| general secretion pathway protein D [Acinetobacter baumannii AB059]
gi|332874904|ref|ZP_08442755.1| general secretion pathway protein D [Acinetobacter baumannii
6014059]
gi|169150391|emb|CAM88288.1| putative general secretion pathway protein [Acinetobacter baumannii
AYE]
gi|183208206|gb|ACC55604.1| Type II secretory pathway, component PulD [Acinetobacter baumannii
ACICU]
gi|213054882|gb|ACJ39784.1| general secretion pathway protein D [Acinetobacter baumannii
AB0057]
gi|213988659|gb|ACJ58958.1| general secretion pathway protein D [Acinetobacter baumannii
AB307-0294]
gi|322506499|gb|ADX01953.1| PulD [Acinetobacter baumannii 1656-2]
gi|323516378|gb|ADX90759.1| Type II secretory pathway, component PulD [Acinetobacter baumannii
TCDC-AB0715]
gi|332736847|gb|EGJ67823.1| general secretion pathway protein D [Acinetobacter baumannii
6014059]
Length = 758
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 32/269 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440
Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276
+ L +F+ ++ AL+ T L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + + A G + T S + T+V D GV L P + G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++ EVS R T V G T+VL GL+ DD ++GIP LS
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
IP +G LFR+ + + + + P +V
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649
>gi|157960066|ref|YP_001500100.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345]
gi|157845066|gb|ABV85565.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345]
Length = 688
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 65/307 (21%), Positives = 121/307 (39%), Gaps = 28/307 (9%)
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQ 195
+ V +L G ++ S+ ++ + + + + + + L+ + Q
Sbjct: 381 AKAVDIAALLKGEDSSLLTSR--GSVAVDERTNTLLVKDTEETLENIHRLIEVLDIPIKQ 438
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------- 241
V ++ + V+ D+ + +G + +T S + + G +
Sbjct: 439 VLIEARMVTVKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNLP 498
Query: 242 -------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
F V + D + L ALE+ +A P +T S Q A+F G +
Sbjct: 499 AAVANPTSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITT-SNQKAAFIEQGVEI 557
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYR 352
+SS+GAT+VT + L TP + R+ L ++ V+ G S
Sbjct: 558 PYVEASSSGATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSID 617
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
++ T V + G TIVL G+ + + +P+L IP LG +FR++ E E+ I
Sbjct: 618 TQRIGTQVLVDHGETIVLGGIYQQQLISRVSKVPILGDIPYLGFMFRSTSDKNERQELLI 677
Query: 413 AATPFLV 419
TP +V
Sbjct: 678 FVTPKIV 684
>gi|170724709|ref|YP_001758735.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908]
gi|169810056|gb|ACA84640.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908]
Length = 682
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 59/248 (23%), Positives = 105/248 (42%), Gaps = 23/248 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG--SSSGPSKSFAA------------------D 233
QV ++ + V+ D+ + +G + I+ S G S S +
Sbjct: 432 RQVLIEARMVTVKDDVSEDLGIKWGISDKQGSKGTSGSIGGAQDIANGIIPSVNDRLNVN 491
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
F + F V + D + L ALE+ +A P +T S Q A++ G
Sbjct: 492 FPAPEAAASIAFHVAKLADGTILDMELSALEQENKGEIIASPRITT-SNQKAAYIEQGVE 550
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSY 351
+ +SS+GA +V+ + L TP + R+ L ++ V+ G++ S
Sbjct: 551 IPYVEASSSGAATVSFKKAVLSLRVTPQITPDNRVILDLEISQDSQGKVVATPLGEVVSI 610
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
++ T V + G TIVL G+ + ++ +P+L IP +G LFR++ E E+
Sbjct: 611 DTQRIGTQVLVDHGETIVLGGIYQQNLISRVSKVPVLGDIPFVGFLFRSTSDKNERQELL 670
Query: 412 IAATPFLV 419
I TP ++
Sbjct: 671 IFVTPKII 678
>gi|153833899|ref|ZP_01986566.1| general secretion pathway protein D [Vibrio harveyi HY01]
gi|148869737|gb|EDL68714.1| general secretion pathway protein D [Vibrio harveyi HY01]
Length = 681
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 68/459 (14%), Positives = 155/459 (33%), Gaps = 89/459 (19%)
Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98
I + + ++ ++ ++ V + ++ S M + +
Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKEIEVVELRNASASEMVRIVDALNKTTNQKSTP 220
Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
++ +++ D + + L L +A ++ D V
Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190
VL G+ +Q ++A + + + A+ ++ V++ L+I
Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA------------ 231
QV ++ I E+ +G Q I ++G S
Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGNLETGAVIQYGNTGASIGGVMIGLEEAKDSER 399
Query: 232 -------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
D+ + G + + ++ A+
Sbjct: 400 TESTYDPQNPNANPDGYVERKFTEEGDYSTLAAALSGVNGAAMSIVMGDWTALISAVSSD 459
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPT 321
+ L+ P++T + ASF G + T ++ +V + G+ L P
Sbjct: 460 SNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQ 519
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ + L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + +
Sbjct: 520 INEGDSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALES 578
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ +PLL IP++G LF+++ E+ + + P +++
Sbjct: 579 ESKVPLLGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIR 617
>gi|239502032|ref|ZP_04661342.1| general secretion pathway protein D [Acinetobacter baumannii AB900]
Length = 758
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 32/269 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440
Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276
+ L +F+ ++ AL+ T L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + + A G + T S + T+V D GV L P + G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++ EVS R T V G T+VL GL+ DD ++GIP LS
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
IP +G LFR+ + + + + P +V
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649
>gi|119472772|ref|ZP_01614709.1| General secretion pathway protein D [Alteromonadales bacterium
TW-7]
gi|119444731|gb|EAW26036.1| General secretion pathway protein D [Alteromonadales bacterium
TW-7]
Length = 687
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 72/393 (18%), Positives = 129/393 (32%), Gaps = 63/393 (16%)
Query: 88 YLFGKNV--GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR------FIADSNIRVE 139
+L K V G+ N +++ +G+ LI+R LE + ++
Sbjct: 231 FLIPKVVADGRTNSVIVSGEGQARTRAIELIKRLDGELESQGNTKVFYLNYAKSEDLVKV 290
Query: 140 MVSDTVVLH----GMVRTIQDSQRAVELSETFLSQS----GRNQYANSSSKKVMNLLNIA 191
+ + L G + E + S + V+ L+I
Sbjct: 291 LQGVSKTLTEEAQGSATKTRSRSNNETSIEAHPESNSLIITAQPDTMRSLESVIERLDIR 350
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------- 242
QV ++ I EV +G Q + G
Sbjct: 351 -RAQVLVEAIIIEVMEGDGVNLGLQWISEQGGMLQFNNGTTVPVGSLAVAAEQAQDTTVT 409
Query: 243 ------------------------------GDFSVKGVLDRFSFETVLHALERATAIRTL 272
G + + + + ++ A+ T L
Sbjct: 410 QNIIGTESGNVTPYTETTEGDYGPLASLLSGINGLALGVVKNDWGAIIQAVATDTNSNIL 469
Query: 273 AEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
A P++T + + AS G + ++S +V + G+ L TP +
Sbjct: 470 ATPSITTMDNEEASILVGQEVPIITGSQTGTNNSNPFQTVERQEVGIKLIVTPQINDGSA 529
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ L I+ EVS S R TTV GG +VL GL+ +D+Q+ +PL
Sbjct: 530 VQLTIEQEVSSVSGATAVD--ISVNKRAIKTTVIADDGGMVVLGGLIDEDVQESVSKVPL 587
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L IP+LG LFR++ R + + + P +++
Sbjct: 588 LGDIPVLGHLFRSTNTTRRKRNLIVFIRPTIIR 620
>gi|221134989|ref|ZP_03561292.1| general secretion pathway protein D [Glaciecola sp. HTCC2999]
Length = 693
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 74/388 (19%), Positives = 140/388 (36%), Gaps = 69/388 (17%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV-VLHGMV 151
V+ +++ D+ + + +L + + + S + D V VL G+
Sbjct: 242 VVADDRTNSVIVSGDVKARQRLINLITRMDQELETSGNTRVIFLNYAKADDLVKVLKGVS 301
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS-----------------KKVMNLLNIAGED 194
+IQ ++ + + + R+ ++ ++V+ L++
Sbjct: 302 ESIQAEEKGTSSNSRSKNANTRDVSIDAHEDSNSLVITAEPDMMRSLEEVIRQLDVR-RA 360
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------- 241
QV ++ I EV +G Q + A G V+
Sbjct: 361 QVQVEAIIVEVFEGDGTTLGVQLVSEEGGGTQFTNGVAGVGSLGVALRQAEDREVNRSTT 420
Query: 242 ------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
GG + + + V+ A+ T LA P L
Sbjct: 421 AQDGSAVQAIDTIEGDFTALANILGGANGMIAGIIENGWGAVVQAVSTDTNSNILATPHL 480
Query: 278 TAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
T + + A F G + T +S+ +V + G+ L TP + + L I
Sbjct: 481 TTMDNEEAFFIVGQEVPIITGTSTGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQLLI 540
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ EVS + S R+ TTV + GGTIVL GL+ +D+Q+ +PLL IP
Sbjct: 541 EQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGDIP 598
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
+G LF+ + ++ + + + P +V+
Sbjct: 599 FVGHLFKTTTSSKRKRNLMVFLRPTIVR 626
>gi|34305612|gb|AAQ63613.1| GspD [Ralstonia solanacearum]
Length = 709
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
A QV ++ I EV D Q+G Q + +FG
Sbjct: 333 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 392
Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
G VS + +L AL ++ L+ P
Sbjct: 393 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 452
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
L + + A G T S + T + D G+ L P + G +
Sbjct: 453 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLV 512
Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P
Sbjct: 513 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 572
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
L IPILGALFR+ R++T + + P++++ A + D+ Y
Sbjct: 573 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 618
>gi|241759496|ref|ZP_04757600.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114]
gi|241320278|gb|EER56611.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114]
Length = 710
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 49/279 (17%), Positives = 106/279 (37%), Gaps = 30/279 (10%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSS 223
N+ +K+++ L++ QV ++ I E + +G + GS+
Sbjct: 428 TDNRGVIEKFRKLIDELDVPTR-QVMVEARIVEAEDTFFRNLGVKFGSGGAIGRTAWGSN 486
Query: 224 SGP-------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
+ + + + ++ + + A E
Sbjct: 487 WSNAQTNYKTNASFNRGEVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASE 546
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+T++ P + + A SG + Y+ SS+GATS+T + L TP +
Sbjct: 547 EQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEA-SSSGATSITFKKAVLGLTVTPNITP 605
Query: 325 PGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
G+I + ++ P V++ + +T + GGT+++ G+ +++
Sbjct: 606 DGQIIMTVKINRDTPIDCTVDSLMTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVN 665
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
+P+L IP++G LF++ E+ I TP ++ V
Sbjct: 666 KVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNV 704
>gi|229527442|ref|ZP_04416834.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)]
gi|229335074|gb|EEO00559.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)]
gi|327485110|gb|AEA79517.1| Type IV pilus biogenesis protein PilQ [Vibrio cholerae LMA3894-4]
Length = 571
Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats.
Identities = 70/419 (16%), Positives = 142/419 (33%), Gaps = 43/419 (10%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
+ I ++ ++ ++ + V Q VL V R
Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+ G + +I + + R L I + + ++ +
Sbjct: 219 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + T + ++++ L+I + QV ++ I V+
Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPNNIAVIREIIESLDIPVK-QVQIEARIVTVK 331
Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
L+++G + + ++ S + +
Sbjct: 332 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 391
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F V + + L AL+ + ++ P L + Q A G + Y SS+
Sbjct: 392 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 450
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
GA++V + L TP + R+ L + + G+ S ++ T V
Sbjct: 451 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V
Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569
>gi|312972414|ref|ZP_07786588.1| general secretion pathway protein D [Escherichia coli 1827-70]
gi|310334791|gb|EFQ00996.1| general secretion pathway protein D [Escherichia coli 1827-70]
Length = 650
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 60/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
+G Q + + + G S +
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ +PL IP++G LFR + R + + + P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLPGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595
>gi|227112152|ref|ZP_03825808.1| putative outer membrane porin HofQ [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 420
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 6/231 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
QV L I + + L+ +G + S+ +F + + L
Sbjct: 186 QVQLAAHIVTISSEHLQALGVNWGLGEGSAANKALRLNNFNVGLPVDTPAINAGFHLARL 245
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ +
Sbjct: 246 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 305
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
+ + TP +L GRI L ++ + P + + G+ + ++ T V + G TI
Sbjct: 306 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 365
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VL G+ + + +P+L ++P+ G LFRN E+ I TP L+
Sbjct: 366 VLGGIFQQQKKNSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 416
>gi|91785421|ref|YP_560627.1| putative fimbrial type-4 assembly signal peptide, PilQ-like
[Burkholderia xenovorans LB400]
gi|91689375|gb|ABE32575.1| Putative fimbrial type-4 assembly signal peptide, PilQ-like protein
[Burkholderia xenovorans LB400]
Length = 567
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 79/454 (17%), Positives = 155/454 (34%), Gaps = 46/454 (10%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59
+R + + LPP+ + A ++ +D + K +S+ + +
Sbjct: 124 LRRQSAAAARDNAAGSSALEGPPVPLPPLARLSGAPLSAADAGLAPDDKPLSLNFQRAEL 183
Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV-ILIGHDGKQM-LNLDILIE 117
V A V ++ L K + L+ +G M + +++
Sbjct: 184 GAVLNAFAR-FTGLNIVASERVRGAVSLRLD-KVPWRTAFDTLLDVNGLAMERHGNVIWV 241
Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSG 172
IA L R+ E + L + + ++ L +Q
Sbjct: 242 APIADLAARERQRF-------EAHARAADLEPLASRTFELHYAHAEDVRRLLTGSGAQRV 294
Query: 173 RNQYANSSSKKVMNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIG 214
++ +++ NLL + QV ++ I E + +G
Sbjct: 295 LSKRGAATADPRTNLLFVTDLEARLAQIAALLTSVDRPTRQVLIEARIVEGEHGFSRNLG 354
Query: 215 FQHSITGSSSGPSKSFAADFG--------GKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ S+ S++ S D F + ++ L ALE
Sbjct: 355 VKLSMATSNADGSAKGLTDAAYDLSARPIAGFDAATAGLTLFAAGATRLLNIELSALEAQ 414
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
++ P + A G + Y+ G + V + L P ++ G
Sbjct: 415 GRGEIVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQIMPDG 473
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
R+ L + +V++ +G P+ + T VE+ GGT+ + G+ D + +P
Sbjct: 474 RVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVEDGGTVSIGGIYATDDRDDVTQVP 531
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
LL KIP+LGALFR+ +E+ + TP +V+
Sbjct: 532 LLGKIPVLGALFRHRAHRDRRSELAVFITPRVVQ 565
>gi|269140603|ref|YP_003297304.1| Type II secretory pathway, component HofQ [Edwardsiella tarda
EIB202]
gi|267986264|gb|ACY86093.1| Type II secretory pathway, component HofQ [Edwardsiella tarda
EIB202]
gi|304560390|gb|ADM43054.1| Type IV pilus biogenesis protein PilQ [Edwardsiella tarda FL6-60]
Length = 409
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 74/422 (17%), Positives = 143/422 (33%), Gaps = 26/422 (6%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGL-----NKVIILQVPVDVQDV 69
L + + + +P + A + + + +++ L + + V
Sbjct: 1 MLLAMSSAGQAMPLTLWFDRAPLPSVLQAVAEFAGLNLILSEEVRGEATLHIAHTPWPRV 60
Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
L + D+ V + L + +L + + LR
Sbjct: 61 LDALAEIYDLSVVRRDGILLIQ------SRARAARQAGPAAAPALLKPPQMRSQRVVLR- 113
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
+ + L + ++ AV T ++ + + L+
Sbjct: 114 -------HADAATVEKSLRQRRDLLGEAGSAVADIRTNALLLRAEAARLAALRDWIAQLD 166
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
+ QV L I + ++ L+++G + SG F +
Sbjct: 167 VPLS-QVQLAAHIVSISQEGLRELGIRWYSGDERSGGQDRLRGAADAYFSAG----FQVA 221
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
+ + L ALER + +A P L A GQ+AS G + Y G +++
Sbjct: 222 RIGGQTLAVALAALERQDKVAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGVSTMEF 281
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ + + TP VL+ I L +Q + P V+ + + ++ T V L G T
Sbjct: 282 KEAVLGMSVTPRVLADAHIELALQISQNMPGRVVRQGDSEALAIDKQEITTQVTLSDGDT 341
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+L G+ + Q G P L+ +P+LG L R+ E+ I TP L+ P +
Sbjct: 342 AMLGGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSPASPAPQ 401
Query: 428 SR 429
S
Sbjct: 402 SL 403
>gi|254373092|ref|ZP_04988581.1| hypothetical protein FTCG_00669 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570819|gb|EDN36473.1| hypothetical protein FTCG_00669 [Francisella novicida GA99-3549]
Length = 593
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 72/418 (17%), Positives = 154/418 (36%), Gaps = 36/418 (8%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
P A + + + +++ ++ + + +D+++V P ++V+ S
Sbjct: 181 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 236
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
L K + + + L++ +R + + + FI + +
Sbjct: 237 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 293
Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
+ +G + + + S A + T + K+V+N ++I DQV ++
Sbjct: 294 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 350
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--------------EGGDFS 246
I EV R ++GF + + S + +
Sbjct: 351 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPTPTPVDTFVGTTAKL 410
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ V + + ALE + +A P L + Q A F G+ + ++++GA +
Sbjct: 411 MYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAA 469
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVE 361
V + + L TP + G I + I + P + R+ T V
Sbjct: 470 VAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVM 529
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++
Sbjct: 530 TKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 587
>gi|238899270|ref|YP_002924953.1| putative transport protein, possibly in biosynthesis of type IV
pilin [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229467031|gb|ACQ68805.1| putative transport protein, possibly in biosynthesis of type IV
pilin [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 419
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 5/230 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-AADFGGKFVSEGGDFSV-KGVL 251
Q+ L I + + L ++G + + G + + + +
Sbjct: 190 RQIELSAHIVTMSSENLYELGIRWGMNALEKGNPLGIKNFNINLPLKNTAIAANFQVASI 249
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ + L ALE+ + +A P L Q+AS G Y+ ++ S+ +
Sbjct: 250 NSRLLDLELSALEQENQVDIIASPRLITSHQQTASIKQGTDIPYQ-INGKKENVSIEFKE 308
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIV 369
+ + TPT+L +I L+++ + P + + + + ++ T + + G TIV
Sbjct: 309 AVLGMEVTPTILGNDKIRLKLKISQNMPGMAIKRGNAETLAIDKQEITTQIIVKHGETIV 368
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G+ + + +P IP LGALFR + E+ I TP L+
Sbjct: 369 LGGIFQKKNNHRIDKVPGFGNIPFLGALFRQDVNQQRRRELVIFITPKLI 418
>gi|229220650|ref|YP_052181.2| putative outer membrane porin HofQ [Pectobacterium atrosepticum
SCRI1043]
Length = 383
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 6/231 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
QV L I + + L+ +G + + +F + + L
Sbjct: 149 QVQLAAHIVTISSEHLQALGVNWGLGEGDAANKALRLNNFNVGLPVDMPAINAGFHLARL 208
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ +
Sbjct: 209 NGRLLDLELMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 268
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
+ + TP +L GRI L ++ + P + + G+ + ++ T V + G TI
Sbjct: 269 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 328
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VL G+ + + +P+LS+IP+ G LFRN E+ I TP L+
Sbjct: 329 VLGGIFQQQKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 379
>gi|313501056|gb|ADR62422.1| PilQ [Pseudomonas putida BIRD-1]
Length = 384
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 95/236 (40%), Gaps = 2/236 (0%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+++ L++ QV ++ I E D K +G + G
Sbjct: 141 QLVAQLDVPVR-QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGLERAG 199
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ + + L A+E++ +++P + ++A G + Y+ S S
Sbjct: 200 SSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQS- 258
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
GATSV+ + + L TP + ++ + ++ EP ++P R + + V +
Sbjct: 259 GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNAKVRV 318
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
G TIV+ G+ + + +P +P +G LFR +++E+ + TP +
Sbjct: 319 ADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 374
>gi|49613540|emb|CAG76991.1| putative type II secretion system protein [Pectobacterium
atrosepticum SCRI1043]
Length = 393
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 6/231 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
QV L I + + L+ +G + + +F + + L
Sbjct: 159 QVQLAAHIVTISSEHLQALGVNWGLGEGDAANKALRLNNFNVGLPVDMPAINAGFHLARL 218
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ +
Sbjct: 219 NGRLLDLELMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 278
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
+ + TP +L GRI L ++ + P + + G+ + ++ T V + G TI
Sbjct: 279 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 338
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VL G+ + + +P+LS+IP+ G LFRN E+ I TP L+
Sbjct: 339 VLGGIFQQQKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 389
>gi|242238911|ref|YP_002987092.1| general secretion pathway protein D [Dickeya dadantii Ech703]
gi|242130968|gb|ACS85270.1| general secretion pathway protein D [Dickeya dadantii Ech703]
Length = 714
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 62/301 (20%), Positives = 116/301 (38%), Gaps = 31/301 (10%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
T+++ G ++ + L T R+ ++V+N L+I QV ++ IA
Sbjct: 361 TIIIQGKEVIMRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLVEAIIA 413
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKFVSEGGDF-S 246
EV+ +G Q + + + F S G F
Sbjct: 414 EVQDADGLNLGIQWANKRAGMTQYTNTGMPISTAIVGVDQYRDDGTLTSNFSSALGSFNG 473
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
+ ++ +L AL + LA P++ I A+F G + T S +T
Sbjct: 474 IAAGFYHGNWSMLLTALSSNSKNDVLATPSIVTIDNMEATFNVGQEVPVLTGSQTTSADN 533
Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTT 359
++V G+ L P + + L+I+ EVS ++ ++ R +
Sbjct: 534 IYSTVERKTVGIKLKVKPQINEGDSVLLQIEQEVSSVADSSSSTSSDLGATFNTRTVNNA 593
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V + +G T+V+ GLL + +PLL IP+LG LFR+ + + + P ++
Sbjct: 594 VMVTNGETVVVGGLLNKSTVETDSKVPLLGDIPVLGNLFRSKSLTVSKRNLMLFLRPTII 653
Query: 420 K 420
+
Sbjct: 654 R 654
>gi|238764794|ref|ZP_04625736.1| General secretion pathway protein D [Yersinia kristensenii ATCC
33638]
gi|238696992|gb|EEP89767.1| General secretion pathway protein D [Yersinia kristensenii ATCC
33638]
Length = 635
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 47/253 (18%), Positives = 98/253 (38%), Gaps = 12/253 (4%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----ADFGGK 237
+V+ L++ QV ++ I E + +G + + A+ +
Sbjct: 326 DQVIEKLDVR-RAQVLVEAIIVETQNGEGLNLGIKWANKFHGGVNFLQNPDRIRANNNSE 384
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ + +++ + AL + LA P++ + A F G + T
Sbjct: 385 NPIPTVISGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 444
Query: 298 VSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---S 350
+ +T S++ GV+L P + + L I+ EVS
Sbjct: 445 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSGTNANNLGSV 504
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ R + V + SG T+V+ GLL + ++ +P L IP++G LF+ + N E++ +
Sbjct: 505 FNKRVVNNAVLVKSGETVVVGGLLDKKLSKVINKVPFLGDIPLIGRLFQQRKENIEKSNL 564
Query: 411 FIAATPFLVKPVA 423
+ P +++
Sbjct: 565 ILFIRPTILRETN 577
>gi|50122032|ref|YP_051199.1| general secretion pathway protein D [Pectobacterium atrosepticum
SCRI1043]
gi|49612558|emb|CAG76008.1| general secretion pathway protein D [Pectobacterium atrosepticum
SCRI1043]
Length = 650
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 67/367 (18%), Positives = 130/367 (35%), Gaps = 43/367 (11%)
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLH 148
ANV+ ++ + + + + L R+ N +V +D V VL
Sbjct: 219 TANVVADERTNSVLVRGEPNSRQRVIDMIKQLDRQQAVQGNTKVIYLKYAKATDLVEVLT 278
Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
G+ +IQ Q+ + +T ++V+ L+I QV
Sbjct: 279 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 337
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240
++ IAEV+ +G Q + + + +
Sbjct: 338 VEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATSA 397
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296
G + + ++ ++ AL + LA P++ + A+F G + +
Sbjct: 398 LGSFNGIAAGFYQGNWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 457
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRV 353
T S +V G+ L P + + L I+ EVS + ++
Sbjct: 458 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGATFNT 517
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R + V + SG T+V+ GLL + +P L IPILG LFR++ ++ + +
Sbjct: 518 RTVNNAVLVSSGETVVVGGLLDKSTNESASKVPFLGDIPILGHLFRSNSQETKKRNLMLF 577
Query: 414 ATPFLVK 420
P +++
Sbjct: 578 IRPSIIR 584
>gi|300702677|ref|YP_003744277.1| general secretory pathway protein d, type II secretion system
[Ralstonia solanacearum CFBP2957]
gi|299070338|emb|CBJ41633.1| General Secretory Pathway protein D, type II secretion system
[Ralstonia solanacearum CFBP2957]
Length = 809
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
A QV ++ I EV D Q+G Q + +FG
Sbjct: 433 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 492
Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
G VS + +L AL ++ L+ P
Sbjct: 493 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 552
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
L + + A G T S + T + D G+ L P + G +
Sbjct: 553 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGLV 612
Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P
Sbjct: 613 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 672
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
L IPILGALFR+ R++T + + P++++ A + D+ Y
Sbjct: 673 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 718
>gi|293610078|ref|ZP_06692379.1| predicted protein [Acinetobacter sp. SH024]
gi|292827310|gb|EFF85674.1| predicted protein [Acinetobacter sp. SH024]
Length = 758
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 62/269 (23%), Positives = 101/269 (37%), Gaps = 32/269 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440
Query: 242 GGDF------------------SVKGVLDRFSF-------ETVLHALERATAIRTLAEPT 276
+ L +F ++ AL+ T L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIAGGANKGNGATLALGNFENSRKAYGALIQALKTNTKSNLLSTPS 500
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + + A G + T S + T+V D GV L P + G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++ EVS R T V G T+VL GL+ DD ++GIP LS
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
IP +G LFR+ + + + + P +V
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649
>gi|255067346|ref|ZP_05319201.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256]
gi|255048497|gb|EET43961.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256]
Length = 711
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 120/316 (37%), Gaps = 37/316 (11%)
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
+ N +L G + D + N+ +K+++ L++
Sbjct: 397 EDNGSSNSNGRNTLLSGRGSALIDPATNTLIV-------TDNRNVIEKFRKLIDELDVPT 449
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS---------------------------ITGSSSG 225
QV ++ I E + + +G + G S+
Sbjct: 450 R-QVMVEARIVEAKDGFSRDLGVKFGAAGARGRNSWGNDWSAAQNNHNTNASVFRGESAY 508
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
P+ S + + ++ L + + A E +T++ P + + A
Sbjct: 509 PTWSLQPNVSLPATAATNSIALVRALSSGALGLEISASEATGKSKTISNPRVLTQDRREA 568
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVN 344
+ SG + Y+ SS+GATSV+ + L TP V G+I + ++ PV V+
Sbjct: 569 TIESGTEIPYQEA-SSSGATSVSFKKAVLGLTVTPNVTPDGQIIMTVKITKDTPVDCTVD 627
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+ + + +T + GGT+++ G+ ++D +PLL IP++G LF++
Sbjct: 628 SLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDNSDTINKVPLLGDIPVVGNLFKSRAKK 687
Query: 405 REETEIFIAATPFLVK 420
E E+ I TP ++
Sbjct: 688 EERRELLIFITPRIMD 703
>gi|126176299|ref|YP_001052448.1| type IV pilus secretin PilQ [Shewanella baltica OS155]
gi|125999504|gb|ABN63579.1| type IV pilus secretin PilQ [Shewanella baltica OS155]
Length = 683
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 49/311 (15%)
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
++ V+ ++TV++ TI++ R VE+ + + I
Sbjct: 395 PRGSVAVDERTNTVLVKDTAETIENIHRLVEVLD----------------------IPIR 432
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------------- 231
QV ++ + V+ D+ + +G + +T S
Sbjct: 433 ---QVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGIIPTADQRLN 489
Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
F V + D + L ALE+ +A P +T S Q A++
Sbjct: 490 VNLPSAASNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQ 548
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
G + S+S+GATSVT + L TP + R+ L ++ V+ P+
Sbjct: 549 GVEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPA 608
Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
++ T V + +G TIVL G+ + ++ +P+L IP++G LFRN+ E
Sbjct: 609 VAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQ 668
Query: 409 EIFIAATPFLV 419
E+ I TP +V
Sbjct: 669 ELLIFVTPKIV 679
>gi|54302290|ref|YP_132283.1| Flp pilus assembly protein [Photobacterium profundum SS9]
gi|46915712|emb|CAG22483.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
SS9]
Length = 296
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 29/261 (11%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
++V + + IS+ NK ++++P + + V +P AD+++ +Y+ GK G N
Sbjct: 27 STNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTN 86
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
VI+ + + LD+ + D+ L+ L F+ + I V + +VL G V +
Sbjct: 87 VIIWDSRDQLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIA 146
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
AVE++ TF ++ +++NL+ + G QV L+VT+AEV+R ++++ +
Sbjct: 147 TAVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKFV 195
Query: 219 ITGSSSGPSKSFAADFGGKFVSEG------------------GDFSVKGVLDRFSFETVL 260
S + A + G + F
Sbjct: 196 FAHQSGNWTWGGANGGASVPSNVGIIDPIIDAAISNPLSIDDNGLFASFLSSNTLFAAAF 255
Query: 261 HALERATAIRTLAEPTLTAIS 281
+ + LAEPTLTAIS
Sbjct: 256 DIAKTNGLAKVLAEPTLTAIS 276
>gi|120600633|ref|YP_965207.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1]
gi|146294790|ref|YP_001185214.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32]
gi|120560726|gb|ABM26653.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1]
gi|145566480|gb|ABP77415.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32]
Length = 683
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 25/261 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229
+++ +L+I QV ++ + V+ ++ + +G + IT S
Sbjct: 422 RLVEVLDIPIR-QVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGI 480
Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ + S F V + D + L ALE+ +A P +T S
Sbjct: 481 VPSIGDRLNVNLPAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-S 539
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
Q A++ G + S+S+GATSVT + L TP + R+ L ++
Sbjct: 540 NQKAAYIEQGIEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGK 599
Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
V P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR
Sbjct: 600 TVPTSTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 659
Query: 400 NSRFNREETEIFIAATPFLVK 420
N+ E E+ I TP +V
Sbjct: 660 NTTDKNERQELLIFVTPKIVD 680
>gi|127511146|ref|YP_001092343.1| type IV pilus secretin PilQ [Shewanella loihica PV-4]
gi|126636441|gb|ABO22084.1| type IV pilus secretin PilQ [Shewanella loihica PV-4]
Length = 683
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 63/298 (21%), Positives = 119/298 (39%), Gaps = 26/298 (8%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204
+L G ++ ++ V + + + ++ + + +++ +L+I QV ++ +
Sbjct: 384 LLKGDDASLLSARGTVAVDDRTNTLLVKDTEESLENIHRLVEVLDIPIR-QVLIESRMVT 442
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFA---------------------ADFGGKFVSEGG 243
V+ D+ + +G + IT S +
Sbjct: 443 VKDDVSEDLGIKWGITDQQGSKGTSGSLEGANDIANGVVPDIGDRLNVNLPAAVANPTSI 502
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F V + D + L ALE+ + +A P +T S Q A++ G + S+S+G
Sbjct: 503 AFHVAKLADGTLLDLELSALEQESKGEIIASPRITT-SNQKAAYIEQGVEIPYVESASSG 561
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVE 361
A +V + L TP + R+ L ++ V+ G S ++ T V
Sbjct: 562 AATVQFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPLGQAVSIDTQRIGTQVL 621
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ G TIVL G+ + + +P+L IP LG LFRN+ E E+ I TP ++
Sbjct: 622 VDHGETIVLGGIYQQQLINRVSKVPVLGDIPFLGYLFRNTTDKNERQELLIFVTPKII 679
>gi|37678398|ref|NP_933007.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016]
gi|37197137|dbj|BAC92978.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016]
Length = 672
Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 55/318 (17%), Positives = 109/318 (34%), Gaps = 47/318 (14%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEV 205
G V + + + + + V+ L+I QV ++ I E+
Sbjct: 295 SGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQDVITQLDIR-RAQVLIEALIVEM 353
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGG----------------------------- 236
+G Q + + S G
Sbjct: 354 AEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDQTKTEYYTNKDGDRVPYQ 413
Query: 237 ---------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
+ G L + ++ A+ + L+ P++T + ASF
Sbjct: 414 VTESGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASF 473
Query: 288 TSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
G + T ++ +V + G+ L P + + L I+ EVS +
Sbjct: 474 IVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGA 533
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
A D+ + R+ +T+V + G +VL GL+ + + + +PLL IPILG LF+++
Sbjct: 534 NGAVDV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTN 592
Query: 403 FNREETEIFIAATPFLVK 420
E+ + + P +++
Sbjct: 593 TQVEKKNLMVFIKPTIIR 610
>gi|126640364|ref|YP_001083348.1| putative general secretion pathway protein [Acinetobacter baumannii
ATCC 17978]
Length = 667
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 32/269 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S
Sbjct: 291 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 349
Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276
+ L +F+ ++ AL+ T L+ P+
Sbjct: 350 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 409
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + + A G + T S + T+V D GV L P + G + L
Sbjct: 410 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 469
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++ EVS R T V G T+VL GL+ DD ++GIP LS
Sbjct: 470 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 529
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
IP +G LFR+ + + + + P +V
Sbjct: 530 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 558
>gi|121634273|ref|YP_974518.1| pilus secretin [Neisseria meningitidis FAM18]
gi|120865979|emb|CAM09716.1| pilus secretin [Neisseria meningitidis FAM18]
Length = 589
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGG 236
K+++ L++ QV ++ I E + +G + TG +S + FGG
Sbjct: 324 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 382
Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ S+ + + L A E + +TLA P + + +
Sbjct: 383 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 442
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 443 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 502
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 503 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 562
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 563 GKKTDRRELLIFITPRI 579
>gi|253689235|ref|YP_003018425.1| general secretion pathway protein D [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251755813|gb|ACT13889.1| general secretion pathway protein D [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 640
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 68/367 (18%), Positives = 132/367 (35%), Gaps = 43/367 (11%)
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLH 148
ANV+ ++ + + + + L R+ N +V +D V VL
Sbjct: 209 TANVVADERTNSVLVRGEPNSRQRVIDMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLT 268
Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
G+ +IQ Q+ + +T ++V+ L+I QV
Sbjct: 269 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 327
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240
++ IAEV+ +G Q + + + +
Sbjct: 328 VEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATTA 387
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296
GG + + ++ ++ AL + LA P++ + A+F G + +
Sbjct: 388 LGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 447
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRV 353
T S +V G+ L P + + L I+ EVS + ++
Sbjct: 448 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGATFNT 507
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + +
Sbjct: 508 RTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSQETKKRNLMLF 567
Query: 414 ATPFLVK 420
P +++
Sbjct: 568 IRPSIIR 574
>gi|319428303|gb|ADV56377.1| type IV pilus secretin PilQ [Shewanella putrefaciens 200]
Length = 683
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 25/261 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229
+++ +L+I QV ++ + V+ ++ + +G + IT S
Sbjct: 422 RLVEVLDIPIR-QVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGI 480
Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ + S F V + D + L ALE+ +A P +T S
Sbjct: 481 VPSIGDRLNVNLPAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-S 539
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
Q A++ G + S+S+GATSVT + L TP + R+ L ++
Sbjct: 540 NQKAAYIEQGIEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGK 599
Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
V P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR
Sbjct: 600 TVPTSTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 659
Query: 400 NSRFNREETEIFIAATPFLVK 420
N+ E E+ I TP +V
Sbjct: 660 NTTDKNERQELLIFVTPKIVD 680
>gi|332305113|ref|YP_004432964.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332172442|gb|AEE21696.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 580
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 71/351 (20%), Positives = 141/351 (40%), Gaps = 27/351 (7%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ G +I + + + +A L + + + + + V+ +L
Sbjct: 227 RLEGNILLIAPSEELASRETQQLQNRQQVAQLAPLISANLQINYAKAKEVAG--ILKNTD 284
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYAN-SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
+I + +V + E + R+ A+ ++K+++ L+I + QV ++ + VR +
Sbjct: 285 NSILSPRGSVAVDERTNTVLLRDTQASIDEARKLISALDIPVK-QVLIESRMVTVRDNAG 343
Query: 211 KQIGFQHSITGSSSGPSKS--------------------FAADFGGKFVSEGGDFSVKGV 250
+Q+G + + +S + S + + V +
Sbjct: 344 EQLGVRWGFSNNSGDTATSGTIEGADTLSSGVVPSIDNRLNVNLPVTSPAGSIGIQVARL 403
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+D + L ALE +A P +T + + A G + Y +SS GATSV
Sbjct: 404 VDGTILDLELSALESENKGEVIASPRITVANQREAYIEQGTEIPYVQSTSS-GATSVEFK 462
Query: 311 DYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
+ L TP + RI L + + + + G + ++ T V + +G TI
Sbjct: 463 KAVLSLKVTPHITPDHRIILDLVVTQDTRGDTVNTSTGLAVAIDTQEISTQVLVNNGETI 522
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VL G+ + +PLL IP+LG LF+N++ E+ E+ I TP ++
Sbjct: 523 VLGGIFQQTSTDDVSQVPLLGDIPVLGHLFKNTQTVNEKRELLIFVTPKIL 573
>gi|42186|emb|CAA49645.1| outD [Pectobacterium carotovorum]
Length = 649
Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats.
Identities = 52/263 (19%), Positives = 101/263 (38%), Gaps = 25/263 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
++V+ L+I QV ++ IAEV+ +G Q + + +
Sbjct: 322 EQVIAQLDIRRP-QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGA 380
Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ GG + + ++ ++ AL + LA P++ +
Sbjct: 381 DQFRRDGTLGTAATTALGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNME 440
Query: 285 ASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
A+F G + +T S +V G+ L P + + L I+ EVS
Sbjct: 441 ATFNVGQEVPVLAGSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVA 500
Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ ++ R + V + SG T+V+ GLL + +PLL IP+LG L
Sbjct: 501 DAASSSSTNLGATFNTRTVNNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYL 560
Query: 398 FRNSRFNREETEIFIAATPFLVK 420
FR++ ++ + + P +++
Sbjct: 561 FRSNSTETKKRNLMLFIRPSIIR 583
>gi|262170336|ref|ZP_06038014.1| type II secretory pathway component PulD [Vibrio mimicus MB-451]
gi|261891412|gb|EEY37398.1| type II secretory pathway component PulD [Vibrio mimicus MB-451]
Length = 675
Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats.
Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 50/321 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
G + + V ++ + S +V+ L+I QV ++ I E
Sbjct: 294 KGTGQQTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352
Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231
+ +G Q I ++G S
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKRPIRDSNTGAIKY 412
Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D+ + G + + +++A+ + L+ P++T +
Sbjct: 413 YEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGE 472
Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
ASF G + T ++ +V + G+ L P + + L I+ EVS
Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR
Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591
Query: 400 NSRFNREETEIFIAATPFLVK 420
++ E+ + + P +++
Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612
>gi|24371883|ref|NP_715925.1| type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1]
gi|24345706|gb|AAN53370.1|AE015476_11 type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1]
Length = 684
Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats.
Identities = 66/298 (22%), Positives = 125/298 (41%), Gaps = 26/298 (8%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204
+L G ++ + +V + E + ++ + +++ +L+I QV ++ +
Sbjct: 385 LLKGADSSLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIR-QVLIESRMVT 443
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------------GG 243
V+ D+ + +G + +T S + + G +
Sbjct: 444 VKDDVSEDLGIRWGVTDQQGNKGTSGSLEGAGDIANGKVPSLDNRLNVNLPAAVTNPTSI 503
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F V + D + L ALE+ +A P +T S Q A++ G + S+S+G
Sbjct: 504 AFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSG 562
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361
ATSVT + L TP + R+ L ++ V+ P+ ++ T V
Sbjct: 563 ATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVL 622
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V
Sbjct: 623 VDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680
>gi|261211295|ref|ZP_05925584.1| type II secretory pathway component PulD [Vibrio sp. RC341]
gi|260839796|gb|EEX66407.1| type II secretory pathway component PulD [Vibrio sp. RC341]
Length = 675
Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats.
Identities = 57/321 (17%), Positives = 116/321 (36%), Gaps = 50/321 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKVTIAE 204
G + + V ++ + S + +V+ L+I QV ++ I E
Sbjct: 294 KGTGQQTTSKRNEVMIAAHSDTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352
Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231
+ +G Q I ++G S
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKKPIRNSDTGEIKY 412
Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D+ + G + + ++ A+ + L+ P++T +
Sbjct: 413 YEETTTKGDYSTLASALSGLQGAAVSIALGDWTALISAVSNDSKSNILSSPSITVMDNGE 472
Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
ASF G + T ++ +V + G+ L P + + L+I+ EVS
Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSNV 532
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR
Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591
Query: 400 NSRFNREETEIFIAATPFLVK 420
++ E+ + + P +++
Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612
>gi|114045758|ref|YP_736308.1| type IV pilus secretin PilQ [Shewanella sp. MR-7]
gi|113887200|gb|ABI41251.1| type IV pilus secretin PilQ [Shewanella sp. MR-7]
Length = 684
Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats.
Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 26/298 (8%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204
+L G ++ + +V + E + ++ + +++ +L+I QV ++ +
Sbjct: 385 LLKGADSSLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIR-QVLIESRMVT 443
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------------------G 243
V+ D+ + +G + +T S + G +
Sbjct: 444 VKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIATGTVPSLDNRLNVNLPAAVTNPTSI 503
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F V + D + L ALE+ +A P +T S Q A++ G + S+S+G
Sbjct: 504 AFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSG 562
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361
ATSVT + L TP + R+ L ++ V+ P+ ++ T V
Sbjct: 563 ATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVL 622
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V
Sbjct: 623 VDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680
>gi|258620393|ref|ZP_05715431.1| general secretion pathway protein D [Vibrio mimicus VM573]
gi|258624627|ref|ZP_05719563.1| general secretion pathway protein D [Vibrio mimicus VM603]
gi|258583091|gb|EEW07904.1| general secretion pathway protein D [Vibrio mimicus VM603]
gi|258587272|gb|EEW11983.1| general secretion pathway protein D [Vibrio mimicus VM573]
Length = 675
Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats.
Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 50/321 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
G + + V ++ + S +V+ L+I QV ++ I E
Sbjct: 294 KGTGQQTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352
Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231
+ +G Q I ++G S
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGIEEAKDTTEKRPIRDSNTGAIKY 412
Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D+ + G + + +++A+ + L+ P++T +
Sbjct: 413 YEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGE 472
Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
ASF G + T ++ +V + G+ L P + + L I+ EVS
Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR
Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591
Query: 400 NSRFNREETEIFIAATPFLVK 420
++ E+ + + P +++
Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612
>gi|238787297|ref|ZP_04631096.1| General secretion pathway protein D [Yersinia frederiksenii ATCC
33641]
gi|238724559|gb|EEQ16200.1| General secretion pathway protein D [Yersinia frederiksenii ATCC
33641]
Length = 657
Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats.
Identities = 54/282 (19%), Positives = 107/282 (37%), Gaps = 18/282 (6%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+I+ + L T + + +V+ L+I QV ++ I E +
Sbjct: 325 SIKAHDQTNSLVITAAPKIMKEL------DQVIEKLDIR-RAQVLVEAIIVETQNGEGLN 377
Query: 213 IGFQHSITGSSSGPSKSFAAD----FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
+G Q + G + + + + +++ + AL
Sbjct: 378 LGVQWANKFHGGVNFLQNPESVKNKNGSENIVPKLITGLTAGFYKGNWDGLFTALATNLN 437
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
LA P++ + A F G + +T ++ S++ GV+L P +
Sbjct: 438 NNILATPSIVTLDNMEAEFNVGQEVPILTSTQTTTTDKVYNSISRQSVGVMLKVKPQINK 497
Query: 325 PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ L I+ EVS + + R + V + SG T+V+ GLL + +
Sbjct: 498 GDSVLLEIRQEVSSVADSSDINTHNLGSVFNKRIVNNAVLVKSGETVVVGGLLDKKVNKT 557
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
+PLL IP +GALFR S+ E++ + + P +++ +
Sbjct: 558 INKVPLLGDIPFIGALFRQSKEKVEKSNLILFIKPTILRETS 599
>gi|313200821|ref|YP_004039479.1| type II and iii secretion system protein [Methylovorus sp. MP688]
gi|312440137|gb|ADQ84243.1| type II and III secretion system protein [Methylovorus sp. MP688]
Length = 671
Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats.
Identities = 79/468 (16%), Positives = 168/468 (35%), Gaps = 63/468 (13%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
P E A I + + + I+ L+K I V + + D + T
Sbjct: 181 PVSLEFRDANIKMVFEALSRATGINFILDKDIRADAK---ATVYIRKASIEDAIEMVLAT 237
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLD-------ILIERDIAHLEMTLRRFIADSNIRVE 139
L K + + + ++ + +++ + L + TL+ + ++ V+
Sbjct: 238 NGLQKKALTETSALIFPNTPQKVKDYKELMIRSFYLTNASAKQVASTLKTVLKTKDVVVD 297
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+ +V+ + ++E ++ + + +V L+
Sbjct: 298 ERLNMIVMRDTP-------EVIHIAEKLVAANDL------------------ADPEVMLE 332
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------GDFSVK 248
+ + E+ R L+++G + S + + G G ++
Sbjct: 333 IEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDSPLTLEGLLNLN 392
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---AT 305
S ++ + + ++ P + + + A G + T +S+ +
Sbjct: 393 SSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIITTTSTANVGISE 452
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVEL 362
+VT D G+ L P + + ++I EVS + N + + R A T + L
Sbjct: 453 NVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTIGTRNASTLLRL 512
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
G +LAGL++D+ ++ +P L IPILG LF N + +TEI +A TP ++
Sbjct: 513 KDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIVLAITPRIL--- 569
Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
++ RPD + ++ N I + + G A G
Sbjct: 570 --GNIRRPD------AEISEYWSGTENGISDKPQLAAPAGGGSPAASG 609
>gi|241767965|ref|ZP_04765503.1| type II and III secretion system protein [Acidovorax delafieldii
2AN]
gi|241360839|gb|EER57693.1| type II and III secretion system protein [Acidovorax delafieldii
2AN]
Length = 381
Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats.
Identities = 59/272 (21%), Positives = 102/272 (37%), Gaps = 36/272 (13%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
QV ++ I EV + L + G Q S G A G+
Sbjct: 86 GRRAQVLVESLIVEVSTNKLAEFGIQWQSVLGSKGDGMVGAIGTNSGLAGANIIGLAAGI 145
Query: 251 --------------------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
++ + + L+ + L+ P L + +
Sbjct: 146 AQGGTAAATAAGKLGGGLNVALAPRVNGQYYLGALANFLQNSGDANVLSTPNLMTLDNEE 205
Query: 285 ASFTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
A G + T S + T+V D G++L P + G + L I E
Sbjct: 206 AKIIIGSNVPFVTGSYANTGGNSGAVNPFTTVERKDVGLMLKVRPQINENGTVKLAIYQE 265
Query: 336 VSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
VS+ V+ + P+ R ++ V + G IV+ GLL+D Q ++ +PL+ IP+L
Sbjct: 266 VSKIDEATVSNANGPTTSKRSIESNVLVEDGNIIVIGGLLEDSYSQGEDKVPLMGDIPLL 325
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
G LFR+ +R++T + + P +V+ A D
Sbjct: 326 GNLFRSENRSRKKTNLMVFLRPVVVRDAAASD 357
>gi|208811320|ref|ZP_03253080.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4206]
gi|208817430|ref|ZP_03258459.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4045]
gi|208823379|ref|ZP_03263696.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4042]
gi|209395621|ref|YP_002268498.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4115]
gi|217329885|ref|ZP_03445960.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
TW14588]
gi|208729950|gb|EDZ79167.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4206]
gi|208730607|gb|EDZ79306.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4045]
gi|208736974|gb|EDZ84659.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4042]
gi|209157076|gb|ACI34510.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4115]
gi|217317116|gb|EEC25549.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
TW14588]
Length = 655
Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 21/269 (7%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ V++ L+I QV ++ IAE++ +G Q + S
Sbjct: 324 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 382
Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ + + + ++ +L AL ++ LA P++
Sbjct: 383 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 442
Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+ A+F G + + S +T +V G+ L P + + L I+
Sbjct: 443 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 502
Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
EVS + + ++ R + + +G T+V+ GLL I+ + +PLL I
Sbjct: 503 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDI 562
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
P+LG LFR + + + P +++
Sbjct: 563 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 591
>gi|113972026|ref|YP_735819.1| type IV pilus secretin PilQ [Shewanella sp. MR-4]
gi|113886710|gb|ABI40762.1| type IV pilus secretin PilQ [Shewanella sp. MR-4]
Length = 684
Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats.
Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 26/298 (8%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204
+L G ++ + +V + E + ++ + +++ +L+I QV ++ +
Sbjct: 385 LLKGADSSLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIR-QVLIESRMVT 443
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------------------G 243
V+ D+ + +G + +T S + G +
Sbjct: 444 VKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIANGTVPTLDNRLNVNLPAAVTNPTSI 503
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F V + D + L ALE+ +A P +T S Q A++ G + S+S+G
Sbjct: 504 AFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSG 562
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361
ATSVT + L TP + R+ L ++ V+ P+ ++ T V
Sbjct: 563 ATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVL 622
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V
Sbjct: 623 VDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680
>gi|320529858|ref|ZP_08030935.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399]
gi|320137876|gb|EFW29781.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399]
Length = 426
Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats.
Identities = 71/284 (25%), Positives = 122/284 (42%), Gaps = 15/284 (5%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
V +R + + T + + +++++ L++ QV+L+ + V +
Sbjct: 143 EVSASDTGRRVLVDTATNTLLFYGTEAEAFAVREIISALDVK-PRQVSLEARVVSVSKAA 201
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----------DFSVKGVLDRFSFET 258
KQ+G + + PS G+ G GV F +
Sbjct: 202 AKQLGVDWTWSALPQYPSVDAGGRVTGRSTGGGRTGTSAPGIIRFGRGPAGVPYEFYYSA 261
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--GATSVTTHDYGVVL 316
+ AL + LA P +T + G+ A G + + S +++ + G++L
Sbjct: 262 AISALITDGKAKMLARPNVTTVQGREALINIGAEVPVPRTTMSDHVTTSAIDYREAGIIL 321
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
+TP V + G I R+ TEVS PV V ++ R ADTTV L G T+V+ GL+
Sbjct: 322 RYTPRVTADGTITARVHTEVSTPVY-VEELKAYRFQKRSADTTVRLRDGETMVIGGLIDS 380
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
D + IP L +P+LGA FR+ R N+ E+E+ I T ++
Sbjct: 381 DESRSLSKIPFLGDLPVLGAFFRSVRTNKTESELMIFLTARVLD 424
>gi|95928759|ref|ZP_01311505.1| type II and III secretion system protein [Desulfuromonas
acetoxidans DSM 684]
gi|95135104|gb|EAT16757.1| type II and III secretion system protein [Desulfuromonas
acetoxidans DSM 684]
Length = 727
Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats.
Identities = 66/303 (21%), Positives = 114/303 (37%), Gaps = 21/303 (6%)
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
I V DT + ++ + +Q V+L E + + +++
Sbjct: 429 EIFVINYKDTEAIEDVIDDVLSNQGEVQLIEGSKKIMVNDIPSKLEEIRMLINQLDEPVK 488
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---------SFAADFGGKFVSEGGDF 245
QV ++ I E + G + S + GG F++
Sbjct: 489 QVLIEARIVEADTSAEQTFGIHWGFEFDNDSGSSGGGIGSSLDNAVVGLGGNFITPTSAT 548
Query: 246 SVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
G LD + L ALE + + ++ P + A+ G++A G + YKT
Sbjct: 549 DGLGTALTFGRVGLDTIVLDLQLSALESSGGGKVISSPKVMALDGETARIGQGTEIPYKT 608
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
S T+ + L TP + I L I S P GV D + ++A+
Sbjct: 609 T--SDNGTTTEFKKAELALEVTPLINPDNTILLEILATNSSP--GVAYTDGVAINTKEAE 664
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T + L +G T V+ G+ ++ Q G P L +P +G LF+ + + TE+ I TP
Sbjct: 665 TKLLLKNGETTVIGGIYTENEQNSDSGTPYLKDLPFIGNLFKYKTSSNDRTELLIFLTPH 724
Query: 418 LVK 420
+V
Sbjct: 725 IVD 727
>gi|304412135|ref|ZP_07393744.1| type IV pilus secretin PilQ [Shewanella baltica OS183]
gi|307306879|ref|ZP_07586619.1| type IV pilus secretin PilQ [Shewanella baltica BA175]
gi|304349401|gb|EFM13810.1| type IV pilus secretin PilQ [Shewanella baltica OS183]
gi|306910457|gb|EFN40887.1| type IV pilus secretin PilQ [Shewanella baltica BA175]
Length = 683
Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats.
Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 49/311 (15%)
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
++ V+ ++TV++ TI++ R VE+ + + I
Sbjct: 395 PRGSVAVDERTNTVLVKDTAETIENIHRLVEVLD----------------------IPIR 432
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------------- 231
QV ++ + V+ D+ + +G + +T S
Sbjct: 433 ---QVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGIIPTPDQRLN 489
Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
F V + D + L ALE+ +A P +T S Q A++
Sbjct: 490 VNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQ 548
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
G + S+S+GATSVT + L TP + R+ L ++ V+ P+
Sbjct: 549 GVEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPA 608
Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
++ T V + +G TIVL G+ + ++ +P+L IP++G LFRN+ E
Sbjct: 609 VAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQ 668
Query: 409 EIFIAATPFLV 419
E+ I TP +V
Sbjct: 669 ELLIFVTPKIV 679
>gi|153002584|ref|YP_001368265.1| type IV pilus secretin PilQ [Shewanella baltica OS185]
gi|160877305|ref|YP_001556621.1| type IV pilus secretin PilQ [Shewanella baltica OS195]
gi|151367202|gb|ABS10202.1| type IV pilus secretin PilQ [Shewanella baltica OS185]
gi|160862827|gb|ABX51361.1| type IV pilus secretin PilQ [Shewanella baltica OS195]
gi|315269510|gb|ADT96363.1| type IV pilus secretin PilQ [Shewanella baltica OS678]
Length = 683
Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats.
Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 49/311 (15%)
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
++ V+ ++TV++ TI++ R VE+ + + I
Sbjct: 395 PRGSVAVDERTNTVLVKDTAETIENIHRLVEVLD----------------------IPIR 432
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------------- 231
QV ++ + V+ D+ + +G + +T S
Sbjct: 433 ---QVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGIIPTPDQRLN 489
Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
F V + D + L ALE+ +A P +T S Q A++
Sbjct: 490 VNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQ 548
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
G + S+S+GATSVT + L TP + R+ L ++ V+ P+
Sbjct: 549 GVEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPA 608
Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
++ T V + +G TIVL G+ + ++ +P+L IP++G LFRN+ E
Sbjct: 609 VAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQ 668
Query: 409 EIFIAATPFLV 419
E+ I TP +V
Sbjct: 669 ELLIFVTPKIV 679
>gi|332994686|gb|AEF04741.1| putative type IV pilus biogenesis protein PilQ [Alteromonas sp.
SN2]
Length = 586
Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats.
Identities = 62/308 (20%), Positives = 118/308 (38%), Gaps = 33/308 (10%)
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
+ I + G V + + + + ++K+++ L+I +
Sbjct: 286 ATILKSSEGGILSERGTVTVDERTNTML---------IRDTLPSIDEARKMIDALDIPVK 336
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------------------FAAD 233
QV ++ + V ++ +++G + ++ S S +
Sbjct: 337 -QVLIESRMVTVLDNVDEELGVRWGLSDRESDSGVSGSIEGAETIAGGSIPSIDDRLNVN 395
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
+ F + ++D + L ALE +A P +T + Q A G +
Sbjct: 396 LPVSSAAGTIGFQIASLVDGTILDLELSALESENKGEIIASPRITVANQQEAYIEQGTEI 455
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351
Y +SS GATSV + L TP + RI L + + + + GD +
Sbjct: 456 PYVQATSS-GATSVEFKKAVLSLRVTPQITPDNRIILDLVVTQDTRGETVSTSTGDAVAI 514
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
++ T V + +G TIVL G+ + +PL +P LG LFRN+ +E+ E+
Sbjct: 515 DTQEIKTQVLVENGETIVLGGIFQQTSTDSVSKVPLFGDLPFLGVLFRNTSEFQEKRELL 574
Query: 412 IAATPFLV 419
I TP ++
Sbjct: 575 IFVTPKII 582
>gi|330447077|ref|ZP_08310727.1| type IV pilus secretin PilQ family protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491268|dbj|GAA05224.1| type IV pilus secretin PilQ family protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 569
Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats.
Identities = 73/414 (17%), Positives = 145/414 (35%), Gaps = 35/414 (8%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
+ I ++ ++ + V + + D V P D+++ S
Sbjct: 163 FQDIPVRNVLQLIADYNDFNLVVSDSVSGNVTLRLDD--VPWPQVLDIILQSKD----LD 216
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM- 150
K V + +++ ++ + LR + N + +L G
Sbjct: 217 KRVRGSVLLVAPKSELTASEHQVMEAKRKQQELSNLRSELIQVN-YAKATDIAALLSGST 275
Query: 151 --VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
V + + T SS K ++ L+I + QV ++ I +
Sbjct: 276 DGVGMLSERGSLHVDERTNSLIIKDISDNISSIKNIVESLDIPVK-QVQIEARIVTINEG 334
Query: 209 ILKQIGFQHSIT----GSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------------- 250
+ ++G + ++ ++ G S G + V
Sbjct: 335 DIDELGVRWGVSKVDGDTTIGGSIEGNLASSGLLDDDATVDDFLNVNLGASAGAASIAFQ 394
Query: 251 ---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
L + L AL+ ++ P L + ++A G + Y SS+GATSV
Sbjct: 395 VAKLGNILLDLELSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEA-SSSGATSV 453
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSG 365
+ + L TP + ++ L ++ + G S ++ T V + +G
Sbjct: 454 SFKKAVLSLMVTPQITPDDKLVLDLEVTQDNKGEDVPTGEGTAVSIDTQRIGTQVLVNNG 513
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
T+VL G+ + + + +P+L IP+LGALFR+ + E+ I TP +V
Sbjct: 514 ETVVLGGIYQHSMTNVTRKVPVLGDIPVLGALFRHKMEQMGKRELLIFVTPKIV 567
>gi|261820712|ref|YP_003258818.1| general secretion pathway protein D [Pectobacterium wasabiae
WPP163]
gi|261604725|gb|ACX87211.1| general secretion pathway protein D [Pectobacterium wasabiae
WPP163]
Length = 640
Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats.
Identities = 68/367 (18%), Positives = 133/367 (36%), Gaps = 43/367 (11%)
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLH 148
ANV+ ++ + + + + L R+ N +V +D V VL
Sbjct: 209 TANVVADERTNSVLVRGEPNSRQRVIDMVKQLDRQQAVQGNTKVIYLKYAKAADLVEVLT 268
Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
G+ +IQ Q+ + +T ++V+ L+I QV
Sbjct: 269 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 327
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240
++ IAEV+ +G Q + + + + +
Sbjct: 328 VEAIIAEVQDADGMNLGVQWANKNAGTTQFTNTGLPITTMMAGADQFRRNGTLSTAATSA 387
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296
G + + ++ ++ AL + LA P++ + A+F G + +
Sbjct: 388 LGSFNGIAAGFYQGNWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 447
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRV 353
T S +V G+ L P + + L I+ EVS ++ ++
Sbjct: 448 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSAELGATFNT 507
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R + V + SG T+V+ GLL ++ +PLL IPILG LFR++ + + +
Sbjct: 508 RTVNNAVLVSSGETVVVGGLLDKSTRESASKVPLLGDIPILGHLFRSNSQETSKRNLMLF 567
Query: 414 ATPFLVK 420
P +++
Sbjct: 568 IRPSIIR 574
>gi|291612969|ref|YP_003523126.1| general secretion pathway protein D [Sideroxydans lithotrophicus
ES-1]
gi|291583081|gb|ADE10739.1| general secretion pathway protein D [Sideroxydans lithotrophicus
ES-1]
Length = 690
Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats.
Identities = 81/448 (18%), Positives = 159/448 (35%), Gaps = 50/448 (11%)
Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--M 87
+ +A + V+ ++ +N++ +P D + V++ RT +
Sbjct: 183 DQPSADAPIVIPVKHASAVDLANIINRL----MPEAAASQSGGDDNQRFVLLADSRTNGL 238
Query: 88 YLFGKNVGQAN-----VILIGHDGKQMLNLDILIERDIAH--LEMTLRRFIADSNIRVEM 140
L N G+ V + N+ ++ ++ L TLR ++
Sbjct: 239 LLRSGNPGRIARVKELVTKLDSAANTPGNIHVVQLKNADATKLAQTLRSVLSGETAPPAA 298
Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
S G+ + +A S + + Y N S V++ L++ Q+ ++
Sbjct: 299 PSTVPQSAGVATSSTGMIQADPSSNALIVTASEPIYNNLRS--VIDKLDVRRP-QIFVEA 355
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------------ 242
I EV D + G Q +S V+ G
Sbjct: 356 LIVEVTADKAAEFGVQWQNLVGASKSGAHIIGGTNFGSVASGNNIIDAANNLSTVNQGLN 415
Query: 243 -----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
G ++ GV + + ALE T L+EP L + + A G + T
Sbjct: 416 IGIVNGTTTIPGVGTVLNLGMLARALETDTNANILSEPNLMTLDNEEAKIVVGQNVPFIT 475
Query: 298 VS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
++T ++ D G+ L P ++ G + L+I EVS + ++
Sbjct: 476 GQYAQTGSATTATPFQTIERKDVGLTLKIKPQIMQGGTVKLQIYQEVSSVLPSSSSSTSG 535
Query: 350 SY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
R ++ + + +VL GL++D + ++ PLL IPILG+LFR +T
Sbjct: 536 LITNKRSIESNILVDDNQIVVLGGLIQDSVNDVQSKTPLLGDIPILGSLFRYDTRQHTKT 595
Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSV 436
+ + P+++ + D++
Sbjct: 596 NLMVFIRPYIM--YQQNSYQQLTDNFYE 621
>gi|83746397|ref|ZP_00943449.1| GspD [Ralstonia solanacearum UW551]
gi|83726938|gb|EAP74064.1| GspD [Ralstonia solanacearum UW551]
Length = 809
Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats.
Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
A QV ++ I EV D Q+G Q + +FG
Sbjct: 433 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 492
Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
G VS + +L AL ++ L+ P
Sbjct: 493 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 552
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
L + + A G T S + T + D G+ L P + G +
Sbjct: 553 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLV 612
Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P
Sbjct: 613 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 672
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
L IPILGALFR+ R++T + + P++++ A + D+ Y
Sbjct: 673 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 718
>gi|207722789|ref|YP_002253224.1| general secretory pathway protein d [Ralstonia solanacearum MolK2]
gi|206587973|emb|CAQ18554.1| general secretory pathway protein d [Ralstonia solanacearum MolK2]
Length = 809
Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats.
Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
A QV ++ I EV D Q+G Q + +FG
Sbjct: 433 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 492
Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
G VS + +L AL ++ L+ P
Sbjct: 493 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 552
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
L + + A G T S + T + D G+ L P + G +
Sbjct: 553 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLV 612
Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P
Sbjct: 613 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 672
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
L IPILGALFR+ R++T + + P++++ A + D+ Y
Sbjct: 673 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 718
>gi|323497014|ref|ZP_08102037.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326]
gi|323317858|gb|EGA70846.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326]
Length = 675
Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats.
Identities = 63/460 (13%), Positives = 149/460 (32%), Gaps = 97/460 (21%)
Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98
I + + ++ ++ ++ V + ++ S M + + +
Sbjct: 163 NIILITGRAAVVNRLADIIKRVDQAGDKEIEVVELANASAAEMVRIVEALNKTTDTKNTP 222
Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
++ +++ D + LR I ++ + + V++
Sbjct: 223 AFLKPKLVADDRTNSILISGD-------PQVRQRLRNLIKQLDVEMASKGNNRVVYLKYA 275
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKK----------------------------V 184
++ ++ L + +S+K+ V
Sbjct: 276 NAEELVEVLKGVSDNLQAEKSSGKKGTSAKRGEVMIAAHPDTNALVLTAPPDIMNALQDV 335
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------- 223
+ L+I QV ++ I E+ +G Q +
Sbjct: 336 IAQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAMIQYGNTGAPIGQVMVGLEE 394
Query: 224 ------------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ + DF + + + ++ A+
Sbjct: 395 AKDTETTKAVYDSDGEFVRNETTTEKGDFTTLAAALSSVNGAALSVVMGDWTALISAVST 454
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTP 320
+ L+ P++T + ASF G + T ++ +V + G+ L P
Sbjct: 455 DSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVP 514
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + L+I+ EVS + A D+ + R+ +T+V + G IVL GL+ + +
Sbjct: 515 QINEGNSVQLKIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVEDGQMIVLGGLIDERALE 573
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ +PLL IP+LG LF+++ E+ + + P +++
Sbjct: 574 SESKVPLLGDIPVLGHLFKSTNTQVEKKNLMVFIKPTIIR 613
>gi|89075207|ref|ZP_01161638.1| putative fimbrial assembly protein [Photobacterium sp. SKA34]
gi|89049029|gb|EAR54596.1| putative fimbrial assembly protein [Photobacterium sp. SKA34]
Length = 568
Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats.
Identities = 74/416 (17%), Positives = 143/416 (34%), Gaps = 39/416 (9%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
+ I ++ ++ + V + + D V P D+++ S
Sbjct: 162 FQDIPVRNVLQLIADYNDFNLVVSDSVSGNVTLRLDD--VPWPQVLDIILQSKD----LD 215
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
K V + +++ ++ + ++LR + N + +L G
Sbjct: 216 KRVRGSVLLVAPKAELTANEHQVMEAKRKQQELLSLRSDLIQVN-YAKATDIAELLSGNA 274
Query: 152 RTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
+ L T S K +++ L+I + QV ++ I +
Sbjct: 275 DGVGMLSERGSLHVDERTNALIIKDTPDNIRSIKDIVSSLDIPVK-QVQIEARIVTINEG 333
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------------------GDF 245
+ ++G + + S + G S G
Sbjct: 334 DIDELGVRWGV--SKVNGDTTVGGSIEGNLASSGLLGENASVDDFLNVNLGAGAGAASIA 391
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
L + L AL+ ++ P L + ++A G + Y SS+GAT
Sbjct: 392 FQVAKLGNILLDLELSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEA-SSSGAT 450
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELP 363
SV+ + L TP + ++ L ++ + G S ++ T V +
Sbjct: 451 SVSFKKAVLSLMVTPQITPDDKLVLDLEVTQDNKGEDVPTGTGTAISIDTQRIGTQVLVN 510
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G T+VL G+ + + + +PLL IPILGALFR+ + E+ I TP +V
Sbjct: 511 NGETVVLGGIYQHSMTHVTRKVPLLGDIPILGALFRHKMEQMGKRELLIFVTPKIV 566
>gi|254238253|ref|ZP_04931576.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
[Pseudomonas aeruginosa C3719]
gi|126170184|gb|EAZ55695.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
[Pseudomonas aeruginosa C3719]
Length = 710
Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats.
Identities = 43/267 (16%), Positives = 93/267 (34%), Gaps = 33/267 (12%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
++++ L+I QV ++ I E K +G + + + G
Sbjct: 436 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHNGNWNSYGKNGNMGIKDKEG 494
Query: 237 -------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
+ + D + L A+E+
Sbjct: 495 YNCGPFQGQCTFPTRDNSPTPFVDMGAKDATSGIGIGFITDNIILDLQLSAMEKTGNGEV 554
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+++P + ++A G + Y+ SSS ++ + + + L TP + RI +
Sbjct: 555 VSQPKVVTSDKETAKILKGSEIPYQEASSSGATST-SFKEAALSLEVTPQITPDNRIIVE 613
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
++ P +P + + + + G TIV+ G+ + + + +P L +
Sbjct: 614 VKVTKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQTKAVDKVPFLGDL 673
Query: 392 PILGALFRNSRFNREETEIFIAATPFL 418
P LG LFR + + E+ + TP +
Sbjct: 674 PYLGRLFRRDTVSDTKNELLVFLTPRI 700
>gi|322421237|ref|YP_004200460.1| general secretion pathway protein D [Geobacter sp. M18]
gi|320127624|gb|ADW15184.1| general secretion pathway protein D [Geobacter sp. M18]
Length = 638
Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats.
Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 14/254 (5%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-------- 234
+V+ L+ QV ++ IAEV + K +G Q + ++S + S F
Sbjct: 345 QVIQKLD-RRSRQVYVQAMIAEVSVNKAKDLGVQLGVITAASNGTVSAIGTFDPFGTVAG 403
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
V+ ++ L + + VL AL+ A+ L+ P + + A G
Sbjct: 404 LSTTVTAAKALGMEVTLGKVNIPVVLQALQTNGALNVLSTPNIMTSDNKEAEIFVGESVP 463
Query: 295 YKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMP 349
+ + ++ T S+ D G++L P + + L I E+S G
Sbjct: 464 FVSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYVKLDIYQEISAVKEFGTATESNL 523
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
R A T+V + + T+++ GL++D Q + IPLL IP LG LF+ R++
Sbjct: 524 GSTKRSAKTSVVVKNSDTVLIGGLIQDTDQVTESKIPLLGDIPGLGWLFKTRSTKRDKVN 583
Query: 410 IFIAATPFLVKPVA 423
+ I TP ++K
Sbjct: 584 LLIMLTPRIIKDAR 597
>gi|217975149|ref|YP_002359900.1| type IV pilus secretin PilQ [Shewanella baltica OS223]
gi|217500284|gb|ACK48477.1| type IV pilus secretin PilQ [Shewanella baltica OS223]
Length = 683
Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats.
Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 49/311 (15%)
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
++ V+ ++TV++ TI++ R VE+ + + I
Sbjct: 395 PRGSVAVDERTNTVLVKDTAETIENIHRLVEVLD----------------------IPIR 432
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------------- 231
QV ++ + V+ D+ + +G + +T S
Sbjct: 433 ---QVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGIIPTPDQRLN 489
Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
F V + D + L ALE+ +A P +T S Q A++
Sbjct: 490 VNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQ 548
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
G + S+S+GATSVT + L TP + R+ L ++ V+ P+
Sbjct: 549 GVEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPA 608
Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
++ T V + +G TIVL G+ + ++ +P+L IP++G LFRN+ E
Sbjct: 609 VAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQ 668
Query: 409 EIFIAATPFLV 419
E+ I TP +V
Sbjct: 669 ELLIFVTPKIV 679
>gi|117922327|ref|YP_871519.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3]
gi|117614659|gb|ABK50113.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3]
Length = 684
Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats.
Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 26/298 (8%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204
+L G ++ + +V + E + ++ + +++ +L+I QV ++ +
Sbjct: 385 LLKGADSSLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIR-QVLIESRMVT 443
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------------GG 243
V+ D+ + +G + +T S + G +
Sbjct: 444 VKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIANGVVPSLDNRLNVNLPAAVTNPTSI 503
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F V + D + L ALE+ +A P +T S Q A++ G + S+S+G
Sbjct: 504 AFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSG 562
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361
ATSVT + L TP + R+ L ++ V+ P+ ++ T V
Sbjct: 563 ATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVL 622
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V
Sbjct: 623 VDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680
>gi|262044789|ref|ZP_06017834.1| general secretion pathway protein D [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037872|gb|EEW39098.1| general secretion pathway protein D [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 657
Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats.
Identities = 75/412 (18%), Positives = 146/412 (35%), Gaps = 54/412 (13%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149
ANV+ +++ + + I + L R+ N +V +D V VL G
Sbjct: 226 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 285
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196
+ ++Q +++ + +++ ++V+ L+I QV
Sbjct: 286 ISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 344
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242
++ IAEV+ +G Q + + +
Sbjct: 345 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSSLAS 404
Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ + ++ +L AL +T LA P++ + A+F G + T S
Sbjct: 405 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 464
Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
+T +V G+ L P + + L I+ EVS ++ ++
Sbjct: 465 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 524
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + + +
Sbjct: 525 TRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLML 584
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
P +++ D Y + FN KE+SE +
Sbjct: 585 FIRPTIIRDR---------DEYRQASSGQYTAFNNAQTKQRGKESSEASLSS 627
>gi|90414685|ref|ZP_01222656.1| putative type II secretory pathway, component EpsD [Photobacterium
profundum 3TCK]
gi|90324227|gb|EAS40802.1| putative type II secretory pathway, component EpsD [Photobacterium
profundum 3TCK]
Length = 670
Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats.
Identities = 52/289 (17%), Positives = 107/289 (37%), Gaps = 42/289 (14%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ + ++ L+I QV ++ I E+ G Q+ +
Sbjct: 322 TAPPDIMRALESIIAQLDIR-RAQVLIEAMIVELSEGDGINFGVQYGSEDGGVIQFGNSG 380
Query: 232 -----------------------------------ADFGGKFVSEGGDFSVKGVLDRFSF 256
DF GG + +
Sbjct: 381 VPISQYAIGLQEAQDVPGSTVTDVNGNVTVNEPTQGDFSTLASVLGGVNGAAMGIVLGDW 440
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHD 311
+++A+ + L+ P++T + ASF G + T S+ +V +
Sbjct: 441 TMLVNAVATDSNSNILSSPSITVMDNGEASFIVGEEVPVVTGSTSSSSNDNPFQTVERKE 500
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
G+ L+ TP + + L+I+ EVS + A D+ + R+ +T+V + G I L
Sbjct: 501 VGIKLNVTPQINEGDSVQLKIEQEVSSVLGASGAVDV-RFAKRQINTSVLVQDGQMIALG 559
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
GL+ ++ ++ + +P+L IP LG LF+++ +T + + P +++
Sbjct: 560 GLISEETKESESKVPILGDIPFLGFLFKSTNTTTAKTNLMVFIKPTIIR 608
>gi|152968741|ref|YP_001333850.1| pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238893139|ref|YP_002917873.1| pullulanase-specific type II secretion system secretin [Klebsiella
pneumoniae NTUH-K2044]
gi|150953590|gb|ABR75620.1| Pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238545455|dbj|BAH61806.1| pullulanase-specific type II secretion system secretin [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 657
Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats.
Identities = 75/409 (18%), Positives = 145/409 (35%), Gaps = 54/409 (13%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149
ANV+ +++ + + I + L R+ N +V +D V VL G
Sbjct: 226 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 285
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196
+ ++Q +++ + +++ ++V+ L+I QV
Sbjct: 286 ISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 344
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242
++ IAEV+ +G Q + + +
Sbjct: 345 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSSLAS 404
Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ + ++ +L AL +T LA P++ + A+F G + T S
Sbjct: 405 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 464
Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
+T +V G+ L P + + L I+ EVS ++ ++
Sbjct: 465 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 524
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + + +
Sbjct: 525 TRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLML 584
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
P +++ D Y + FN KE+SE
Sbjct: 585 FIRPTIIRDR---------DEYRQASSGQYTAFNNAQTKQRGKESSEAS 624
>gi|332532305|ref|ZP_08408185.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas
haloplanktis ANT/505]
gi|332038172|gb|EGI74618.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas
haloplanktis ANT/505]
Length = 701
Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats.
Identities = 52/262 (19%), Positives = 100/262 (38%), Gaps = 28/262 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229
+++ L+I QV ++ + VR ++ + +G + + S S
Sbjct: 439 RMIETLDIP-VQQVVIESRMVTVRDNVTEDLGVRWGFSDQGSSVGISGSLEGAEGIYNAT 497
Query: 230 -----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ + + + + + L ALE +A P +
Sbjct: 498 STSDAPSISDRLNVNLPITNPAASIGLHIAKLANGTLIDLELSALEEENKGEIIASPRII 557
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
A + Q A G + Y +SS GAT+V+ + L TP + ++ L +
Sbjct: 558 AANQQKARIEQGTEIPYTESASS-GATTVSFKKAVLSLEVTPHITPDNKVILDLIITQDT 616
Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ G+ S ++ T V + +G T+VL G+ + I +P+L IP +G
Sbjct: 617 RGDTVQTGTGEAVSIDTQEIQTQVLVENGQTVVLGGIFQQQIINTTSKVPILGDIPYVGR 676
Query: 397 LFRNSRFNREETEIFIAATPFL 418
LF+ + E+ E+ I TP +
Sbjct: 677 LFKTTSEFNEKRELLIFVTPKI 698
>gi|330010541|ref|ZP_08306775.1| general secretion pathway protein D [Klebsiella sp. MS 92-3]
gi|328534526|gb|EGF61113.1| general secretion pathway protein D [Klebsiella sp. MS 92-3]
Length = 657
Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats.
Identities = 75/409 (18%), Positives = 145/409 (35%), Gaps = 54/409 (13%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149
ANV+ +++ + + I + L R+ N +V +D V VL G
Sbjct: 226 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 285
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196
+ ++Q +++ + +++ ++V+ L+I QV
Sbjct: 286 ISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 344
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242
++ IAEV+ +G Q + + +
Sbjct: 345 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSSLAS 404
Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ + ++ +L AL +T LA P++ + A+F G + T S
Sbjct: 405 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 464
Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
+T +V G+ L P + + L I+ EVS ++ ++
Sbjct: 465 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 524
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + + +
Sbjct: 525 TRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLML 584
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
P +++ D Y + FN KE+SE
Sbjct: 585 FIRPTIIRDR---------DEYRQASSGQYTAFNNAQTKQRGKESSEAS 624
>gi|119475138|ref|ZP_01615491.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
proteobacterium HTCC2143]
gi|119451341|gb|EAW32574.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
proteobacterium HTCC2143]
Length = 733
Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats.
Identities = 59/312 (18%), Positives = 116/312 (37%), Gaps = 45/312 (14%)
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRD 208
+ S R + + + + A + +V+ LL++ QV ++ I
Sbjct: 418 ASSSMLSARGSVIVDERTNSLLVTETAQKLQELRRVIRLLDVPVR-QVLVEARIVIANSS 476
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGG-------------------------------- 236
+++G + G + + G
Sbjct: 477 FDEELGVKWGAAGVNQINGDNQLFFGGNTESIEASRNSVADAMINIAQGNAITEAILAPD 536
Query: 237 ------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ G +V V + L+ALE +++P + Q A SG
Sbjct: 537 ALNVDLGVANPTGSVAVGFVSSDVILQMELNALESQGRGEIVSQPKVITGDKQEAIIKSG 596
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGD 347
+ Y+ S+ G T+++ + + L TP++ RI ++++ V N G
Sbjct: 597 SEVPYQES-SANGETTISFKEAVLKLQVTPSITPDDRIIMKLEINQDSIGTLVPSGNGGV 655
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P+ + T V + +G T+VL G+ + + + +P+L IP LG LF N+ +E+
Sbjct: 656 VPTIDTTELTTQVLVGNGETVVLGGVFRTVDVESESKVPVLGDIPYLGRLFTNTTVTQEK 715
Query: 408 TEIFIAATPFLV 419
TE I TP ++
Sbjct: 716 TETLIFITPRIL 727
>gi|40644697|emb|CAD91899.1| secretin precursor [Neisseria meningitidis serogroup B]
Length = 761
Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats.
Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554
Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D + S+ + + L A E + +TLA P + + +
Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKPKTLANPRVLTQNRKE 614
Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A SG + + S + G +T+ + L TP + G+I + ++ P
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + + +T + +GGT+++ G+ ++D +PLL IP++G LF+
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734
Query: 402 RFNREETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751
>gi|332851464|ref|ZP_08433461.1| general secretion pathway protein D [Acinetobacter baumannii
6013150]
gi|332866854|ref|ZP_08437241.1| general secretion pathway protein D [Acinetobacter baumannii
6013113]
gi|332729917|gb|EGJ61248.1| general secretion pathway protein D [Acinetobacter baumannii
6013150]
gi|332734382|gb|EGJ65503.1| general secretion pathway protein D [Acinetobacter baumannii
6013113]
Length = 758
Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats.
Identities = 62/269 (23%), Positives = 103/269 (38%), Gaps = 32/269 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440
Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276
+ L+ +F+ ++ AL+ T L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLELGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + + A G + T S + T+V D GV L P + G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++ EVS R T V G T+VL GL+ DD ++GIP LS
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
IP +G LFR+ + + + + P +V
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649
>gi|224372077|ref|YP_002606449.1| putative GspD [Nautilia profundicola AmH]
gi|223589087|gb|ACM92823.1| putative GspD [Nautilia profundicola AmH]
Length = 580
Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 115/244 (47%), Gaps = 8/244 (3%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFVS- 240
++ L+I + QV +K I E+ QIG + + S S + +A+ GG ++
Sbjct: 305 IIKALDIP-KMQVYVKARILEISNLKASQIGNKLGLYAGSGTGSGLYTLSANMGGPAIAF 363
Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YK 296
S+ + + + LE A + L+EP++ I+ ++ G
Sbjct: 364 DVTSLGLSIPTIRQGLALGATIDLLETFGAAKKLSEPSILCINNTPSTIYVGKTISVKTG 423
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
+S++ + S + D G+ L P + S ++ L ++ V + + G +P+ R
Sbjct: 424 QTTSTSTSVSYSRQDIGLTLEIKPRIDSDNKVSLNVKAVVEDILPGSPDLTLPTTSKRDI 483
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
TT + +G +I++ GL++++ + +P IPI+GALFR+ N ++T + I TP
Sbjct: 484 KTTTIVSNGQSIIIGGLVRNNKDITIKKVPFFGDIPIIGALFRHKEVNEDKTTLVIVLTP 543
Query: 417 FLVK 420
++VK
Sbjct: 544 YIVK 547
>gi|260774763|ref|ZP_05883666.1| general secretion pathway protein D precursor [Vibrio
coralliilyticus ATCC BAA-450]
gi|260609325|gb|EEX35477.1| general secretion pathway protein D precursor [Vibrio
coralliilyticus ATCC BAA-450]
Length = 676
Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats.
Identities = 53/293 (18%), Positives = 109/293 (37%), Gaps = 45/293 (15%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSS 224
++ + V++ L+I QV ++ I E+ +G Q I ++
Sbjct: 323 TAPPDIMNALQDVISQLDIR-RAQVLIEALIVEMTEGDGINLGVQWGSLETGAVIQYGNA 381
Query: 225 GPSKSFA-------------------------------ADFGGKFVSEGGDFSVKGVLDR 253
G D+ + G +
Sbjct: 382 GTKIGNVMVGLEEAEDQKSTEYYTNSAGERVPYDVTEPGDYSTLASALSGVNGAALSVVM 441
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVT 308
+ ++ A+ T L+ P++T + ASF G + T ++ +V
Sbjct: 442 GDWTALISAVSSDTNSNILSSPSITVMDNGEASFIVGEEVPVITGSAAGSNNDNPFQTVD 501
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGT 367
+ G+ L P + + L I+ EVS + + + S+ R+ +T+V + G
Sbjct: 502 RKEVGIKLKVVPQINEGNSVQLTIEQEVSNVLPATSNAAVDVSFAKRQLNTSVMVEDGQM 561
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IVL GL+ + Q+ + +PLL IP LG LF+++ +++ + + P +++
Sbjct: 562 IVLGGLIDERAQESESKVPLLGDIPYLGRLFKSTSSQLQKSNLMVFIKPTIIR 614
>gi|254507255|ref|ZP_05119391.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
gi|219549715|gb|EED26704.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
Length = 678
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 68/462 (14%), Positives = 152/462 (32%), Gaps = 99/462 (21%)
Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98
I + + ++ ++ ++ V + D+ S M + + + N
Sbjct: 164 NIILITGRAAVVNRLADIIKRVDQAGDKEIEVVDLDNASAAEMVRIVEALNKTNDSKNTP 223
Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV------ 146
++ +++ D + LR+ I ++ + + V
Sbjct: 224 AFLQPKLVADDRTNSILISGD-------PQVRQRLRKLIKQLDVEMASKGNNRVVYLKYA 276
Query: 147 --------LHGMVRTIQD-------------SQRAVELSETFLSQSGRNQYAN--SSSKK 183
L G+ +Q + + + + ++ +
Sbjct: 277 KAEELVDVLKGVSDNLQAEKSAGSKSSSSAKRGEVMIAAHPDTNALVLTAPPDIMNALQD 336
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA----- 231
V++ L+I QV ++ I E+ +G Q I ++G
Sbjct: 337 VISQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAMIQYGNAGAPIGQVMVGLE 395
Query: 232 ----------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
D+ + G L + ++ A+
Sbjct: 396 EAKDTTEKKPIRDSNTGAIKYYEETTKQGDYSTLAAALAGVNGAAVSLVMGDWTALISAV 455
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHF 318
+ L+ P++T + ASF G + T ++ +V + G+ L
Sbjct: 456 STDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKV 515
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
P + + L I+ EVS + A D+ + R+ +T+V + G IVL GL+ +
Sbjct: 516 VPQINEGNSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVNDGQMIVLGGLIDERA 574
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + +PLL IP+LG LF+++ E+ + + P +++
Sbjct: 575 LESESKVPLLGDIPVLGHLFKSTSTQVEKKNLMVFIKPTIIR 616
>gi|224171310|ref|XP_002339480.1| predicted protein [Populus trichocarpa]
gi|222875215|gb|EEF12346.1| predicted protein [Populus trichocarpa]
Length = 263
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 22/254 (8%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---------SFAADF 234
++N L+ QV ++ I E + G + S +
Sbjct: 15 LINQLD-EPVKQVLIEARIVEADTSAEQTFGIHWGFEFDNDSGSSGGGIGSSLDNAVVGL 73
Query: 235 GGKFVSEGGDFSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
GG F++ G LD + L ALE + + ++ P + A+ G++A
Sbjct: 74 GGNFITPTSATDGLGTALTFGRVGLDTIVLDLQLSALESSGGGKVISSPKVMALDGETAR 133
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
G + YKT S T+ + L TP + I L I S P GV
Sbjct: 134 IGQGTEIPYKTT--SDNGTTTEFKKAELALEVTPLINPDNTILLEILATNSSP--GVAYT 189
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
D + ++A+T + L +G T V+ G+ ++ Q G P L +P +G LF+ + +
Sbjct: 190 DGVAINTKEAETKLLLKNGETTVIGGIYTENEQNSDSGTPYLKDLPFIGNLFKYKTSSND 249
Query: 407 ETEIFIAATPFLVK 420
TE+ I TP +V
Sbjct: 250 RTELLIFLTPHIVD 263
>gi|56460012|ref|YP_155293.1| Flp pilus assembly protein CpaC [Idiomarina loihiensis L2TR]
gi|56179022|gb|AAV81744.1| possible Flp pilus assembly protein CpaC [Idiomarina loihiensis
L2TR]
Length = 404
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 86/368 (23%), Positives = 150/368 (40%), Gaps = 39/368 (10%)
Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
+ + I+ + D+L+SD + DV V L G VG+A+ + + +
Sbjct: 34 LEEGETRIISI-EPGSDILISDESVVDVHVLDNSRAILRGVGVGKAD--IWLKSEEVLKE 90
Query: 112 LDILIERDIA-HLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
L I++ + LE L A+ ++ S VL G V
Sbjct: 91 LKIMVTASLKLSLEGRLEAISEAEQSLNKTEKSGLTVLSGKVS---------------KR 135
Query: 170 QSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
+ + + ++++NL +TL+V I E +R L+ +G + +
Sbjct: 136 NYEELEKISENHEEILNLTESFQEEPPMLTLRVNILETKRQYLEDLGIRWQ----GTTSG 191
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
+F++ G F + + L ++R + LA P L+ SG+ A+F
Sbjct: 192 PTFSSSLSGLFEWDA------------EINSQLMLMQRRGLAKLLANPVLSTQSGEKATF 239
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
+GG+ V + G VT +YG+ L P VL RI ++ E+S V+
Sbjct: 240 LAGGELPIPQVV-AQGMQDVTFREYGIRLVIQPVVLDDNRIKTQLHAELSNIDPAVSVSG 298
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P R+ ++ G T+VL+GLL D + IP L +PIL FR+ + +
Sbjct: 299 VPGILSRRTESVFLSNDGDTLVLSGLLSTDESAQDDQIPGLGSLPILENAFRSQQNREQT 358
Query: 408 TEIFIAAT 415
TE+ I T
Sbjct: 359 TELIIMVT 366
>gi|110833080|ref|YP_691939.1| type II secretion system protein [Alcanivorax borkumensis SK2]
gi|110646191|emb|CAL15667.1| type II secretion system protein, probable [Alcanivorax borkumensis
SK2]
Length = 406
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 82/249 (32%), Positives = 121/249 (48%), Gaps = 11/249 (4%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
QV + I EV R L GF++S A+ GG G S
Sbjct: 141 QVQTDIRIMEVSRSKLNSFGFEYSNIFDGGNTQVGVASPGGG-----GPSDSFNLFRLGK 195
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
+ T+++ALE TLA+P+LTA+SGQ+A+F SGG+ T S + G V +G+
Sbjct: 196 NSTTIINALESGGFAYTLAKPSLTALSGQTATFLSGGEFPVPTRSDNNG-VQVEFKSFGI 254
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVL 370
L TPTV+S +I L++ EVSE +P RVR+++TTV L G T ++
Sbjct: 255 GLALTPTVISGDQIILKVAPEVSELDFSAGVESAGTSIPGLRVRRSETTVSLAPGETFII 314
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSR 429
+GL+ + IP L +P+LGA FR+ + +RE+ E+ + TP LV P +
Sbjct: 315 SGLVSQNTVNNSNRIPGLGNLPVLGAFFRSGQLSREDKEMVMVVTPHLVSPGSSTEAGPL 374
Query: 430 PDDHYSVED 438
P Y
Sbjct: 375 PGAGYHNSS 383
>gi|254374542|ref|ZP_04990023.1| type IV pilin multimeric outer membrane protein [Francisella
novicida GA99-3548]
gi|151572261|gb|EDN37915.1| type IV pilin multimeric outer membrane protein [Francisella
novicida GA99-3548]
Length = 594
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 72/420 (17%), Positives = 154/420 (36%), Gaps = 38/420 (9%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
P A + + + +++ ++ + + +D+++V P ++V+ S
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
L K + + + L++ +R + + + FI + +
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292
Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
+ +G + + + S A + T + K+V+N ++I DQV ++
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------------EGGD 244
I EV R ++GF + + S + +
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPTPTPTPVDTFVGTTA 409
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ V + + ALE + +A P L + Q A F G+ + ++++GA
Sbjct: 410 KLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGA 468
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTT 359
+V + + L TP + G I + I + P + R+ T
Sbjct: 469 AAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTK 528
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++
Sbjct: 529 VMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 588
>gi|75994479|ref|YP_325593.1| type II secretion protein [Escherichia coli O157:H7 EDL933]
gi|3822147|gb|AAC70101.1| type II secretion protein [Escherichia coli O157:H7]
Length = 642
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 21/269 (7%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ V++ L+I QV ++ IAE++ +G Q + S
Sbjct: 311 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 369
Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ + + + ++ +L AL ++ LA P++
Sbjct: 370 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 429
Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+ A+F G + + S +T +V G+ L P + + L I+
Sbjct: 430 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 489
Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
EVS + + ++ R + + +G T+V+ GLL I+ + +PLL I
Sbjct: 490 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDI 549
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
P+LG LFR + + + P +++
Sbjct: 550 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 578
>gi|297517403|ref|ZP_06935789.1| general secretory pathway component, cryptic [Escherichia coli
OP50]
Length = 503
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 107/295 (36%), Gaps = 27/295 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
+ + V ++ + S S +K V+ L+I QV ++ I EV+
Sbjct: 155 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 213
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDR--- 253
+G Q + + + G S + + +
Sbjct: 214 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 273
Query: 254 ----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
+ +L AL LA P++ + + ASF G + S +
Sbjct: 274 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 333
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V G L TP V + L I+ EVS N+ P++ R V + +G
Sbjct: 334 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 393
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+VL GLL D ++ PLL IP++G LFR + R + + + P +++
Sbjct: 394 ETVVLGGLLDDFSKEQVSKAPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 448
>gi|116053188|ref|YP_793509.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
[Pseudomonas aeruginosa UCBPP-PA14]
gi|115588409|gb|ABJ14424.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
[Pseudomonas aeruginosa UCBPP-PA14]
Length = 710
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 43/267 (16%), Positives = 93/267 (34%), Gaps = 33/267 (12%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
++++ L+I QV ++ I E K +G + + + G
Sbjct: 436 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHNGNWNSYGKNGNMGIKDKEG 494
Query: 237 -------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
+ + D + L A+E+
Sbjct: 495 YNCGPFQGQCTFPTRDNSPTPFVDMGAKDASSGIGIGFITDNIILDLQLSAMEKTGNGEV 554
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+++P + ++A G + Y+ SSS ++ + + + L TP + RI +
Sbjct: 555 VSQPKVVTSDKETAKILKGSEIPYQEASSSGATST-SFKEAALSLEVTPQITPDNRIIVE 613
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
++ P +P + + + + G TIV+ G+ + + + +P L +
Sbjct: 614 VKVTKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQTKAVDKVPFLGDL 673
Query: 392 PILGALFRNSRFNREETEIFIAATPFL 418
P LG LFR + + E+ + TP +
Sbjct: 674 PYLGRLFRRDTVSDTKNELLVFLTPRI 700
>gi|254516135|ref|ZP_05128195.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3]
gi|219675857|gb|EED32223.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3]
Length = 732
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 60/291 (20%), Positives = 117/291 (40%), Gaps = 36/291 (12%)
Query: 163 LSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ E+ + + ++ ++ ++++L++I QV ++ I + D+ K++G Q
Sbjct: 438 IVESRTNSLIVTETSSKLAEIRELIDLVDIPIR-QVMIESRIVIAQSDLEKELGIQWGGG 496
Query: 221 GSSSGPSKSFAADFG-----------------------------GKFVSEGGDFSVKGVL 251
+ + + G S F+V
Sbjct: 497 YLDGDANGNILSVTGDAANAVNLNNSVINGTQPDLSYPGALLVDLGSGSATSGFAVGFTS 556
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ L ALE A +++P + Q A+ SG + ++ ++S GAT+V +
Sbjct: 557 NSLYLTAELSALEAAGKSEVVSQPKVITGDKQPATIKSGTEIPFQQAAAS-GATAVQFKE 615
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
+ L TP + RI L + V + V G +P+ + T V + +G T+
Sbjct: 616 AVLKLDVTPNITPDDRILLDLVINQDSVGDLVPSGQGGLIPAIDTTQLTTQVLVGNGETV 675
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VL G+ + + + +P +P +GALFRN R +TE I TP ++
Sbjct: 676 VLGGVFRTENLETTSKVPFFGDLPYVGALFRNESNQRTKTETLIFITPRIL 726
>gi|146280952|ref|YP_001171105.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri
A1501]
gi|145569157|gb|ABP78263.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri
A1501]
Length = 712
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 54/324 (16%), Positives = 119/324 (36%), Gaps = 28/324 (8%)
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
++A L + + + + +V +G V + S + + ++ + +
Sbjct: 381 ELAPLRREVVQVNYAKAADIARLFQSVTNNGGVAEERGSIAVDDRTNNIIAYQTQERLDE 440
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-- 236
+++ L+I QV ++ I E D K +G + + ++ +
Sbjct: 441 LR--RIVAQLDIPVR-QVMIEARIVEANVDYDKSLGVRWGGNLGAGNKWSAWGKNGNLDI 497
Query: 237 ---------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
V + V D + L A+E+ +++P
Sbjct: 498 EDGEDGGQQITWPMNTPFVDMGAVGSTSGIGLGFVTDNAILDLQLSAMEKTGNGEVVSQP 557
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ ++A G + Y+ SSS ++ + + + L TP + RI + ++
Sbjct: 558 KVVTADKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRIIMEVKVT 616
Query: 336 VSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
EP +P+ R + + V + G TIV+ G+ + + + +P L +P L
Sbjct: 617 KDEPDFSQAATTGVPAIRKNEVNAKVLVTDGETIVIGGVFSNTQSKSVDKVPFLGDLPYL 676
Query: 395 GALFRNSRFNREETEIFIAATPFL 418
G LFR ++E+ + TP +
Sbjct: 677 GRLFRRDLVQDRKSELLVFITPRI 700
>gi|28896907|ref|NP_796512.1| general secretion pathway protein D [Vibrio parahaemolyticus RIMD
2210633]
gi|260365906|ref|ZP_05778400.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030]
gi|260877807|ref|ZP_05890162.1| general secretion pathway protein D [Vibrio parahaemolyticus
AN-5034]
gi|260895544|ref|ZP_05904040.1| general secretion pathway protein D [Vibrio parahaemolyticus
Peru-466]
gi|260902568|ref|ZP_05910963.1| general secretion pathway protein D [Vibrio parahaemolyticus
AQ4037]
gi|28805115|dbj|BAC58396.1| general secretion pathway protein D precursor [Vibrio
parahaemolyticus RIMD 2210633]
gi|308088533|gb|EFO38228.1| general secretion pathway protein D [Vibrio parahaemolyticus
Peru-466]
gi|308089966|gb|EFO39661.1| general secretion pathway protein D [Vibrio parahaemolyticus
AN-5034]
gi|308109694|gb|EFO47234.1| general secretion pathway protein D [Vibrio parahaemolyticus
AQ4037]
gi|308113427|gb|EFO50967.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030]
Length = 675
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 67/455 (14%), Positives = 154/455 (33%), Gaps = 85/455 (18%)
Query: 49 KISIGLNKVIIL-QVPVDVQDV-LVSDPTKADVVVHSPRT---MYLFGKNVGQAN----- 98
I + + ++ ++ ++ V D V + + + + N
Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKEIELVELRNASAAEMVRIVEALNKTTNQKSTP 220
Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
++ +++ D + + L L +A ++ D V
Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190
VL G+ +Q ++A + + + A+ ++ V++ L+I
Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGDVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPS---------------- 227
QV ++ I E+ +G Q I ++G
Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGSLETGAVIQYGNAGAPIGQVMVGLEEAKDTVE 399
Query: 228 -----------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
+ D+ + + + ++ A+ +
Sbjct: 400 KKPIRDSDTGAIKYYEETTTKGDYSTLASALKNVNGAAMSIVMGDWTALVSAVASDSNSN 459
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSP 325
L+ P++T + ASF G + T ++ +V + G+ L P +
Sbjct: 460 ILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEG 519
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+ L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + +
Sbjct: 520 DSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKV 578
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
PLL IP+LG LF+++ ++ + + P +++
Sbjct: 579 PLLGDIPVLGHLFKSTSTQTQKRNLMVFIKPTIIR 613
>gi|27364325|ref|NP_759853.1| general secretion pathway protein D [Vibrio vulnificus CMCP6]
gi|320157717|ref|YP_004190096.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O]
gi|27360443|gb|AAO09380.1| general secretion pathway protein D [Vibrio vulnificus CMCP6]
gi|319933029|gb|ADV87893.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O]
Length = 673
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 55/319 (17%), Positives = 112/319 (35%), Gaps = 48/319 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEV 205
G V + + + + + V+ L+I QV ++ I E+
Sbjct: 295 SGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQDVITQLDIR-RAQVLIEALIVEM 353
Query: 206 RRDILKQIGFQHS-------ITGSSSGPSKSFA--------------------------- 231
+G Q I S++G S
Sbjct: 354 AEGDGVNLGVQWGNLETGAMIQYSNTGASIGQVMIGLEEAKDTTKTESRWDPDKNQWVDR 413
Query: 232 -----ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
D+ + + + ++ A+ + L+ P++T + AS
Sbjct: 414 QYTEKGDYSTLASALSKVNGAALSVVMGDWTALISAVSSDSNSNILSSPSITVMDNGEAS 473
Query: 287 FTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
F G + T ++ +V + G+ L P + + L I+ EVS +
Sbjct: 474 FIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLG 533
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LF+++
Sbjct: 534 ANGAVDV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPVLGHLFKST 592
Query: 402 RFNREETEIFIAATPFLVK 420
E+ + + P +++
Sbjct: 593 NTQVEKKNLMVFIKPTIIR 611
>gi|94312323|ref|YP_585533.1| type II and III secretion system protein [Cupriavidus metallidurans
CH34]
gi|93356175|gb|ABF10264.1| general secretory pathway component, cryptic [Cupriavidus
metallidurans CH34]
Length = 783
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 70/325 (21%), Positives = 116/325 (35%), Gaps = 47/325 (14%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------------- 236
A QV ++ I EV + Q+G Q +S G + FA G
Sbjct: 422 ARRAQVYIESMIVEVSGTLDSQLGIQWQGLINSGGNTVGFAGTNFGTGGQNIINLTAAAA 481
Query: 237 --------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
V + G ++ + +LHAL + T++ L+ P L +
Sbjct: 482 LYNQNKTAGLAAISGLVPDVGGLNLGVINKAIGLGALLHALGQNTSVNLLSTPNLITLEN 541
Query: 283 QSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+ A G T S + T + D G+ L P + G + ++I
Sbjct: 542 EEAKILIGQNIPITTGSYAQTGSSTSVTPFQTFDRKDVGITLRVRPQISEGGLVKMQIYQ 601
Query: 335 EVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
E S+ G P+ VR +T V + G IVL GL++D+ + +PLL IP
Sbjct: 602 ESSQVAPGTLTNPQGPTTNVRSIETNVLVDDGQIIVLGGLIEDNYGDNVQKVPLLGDIPY 661
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD---------DHYSVEDDAKAFF 444
LG+LFR R +T + + P++++ D D ++ +
Sbjct: 662 LGSLFRYENKTRSKTNLLVFLRPYVMRTTTATDRLTQDRYDFIRGQQQNFVSPNMVVREL 721
Query: 445 FNRVNKIYGPKEASEVEGQNYKGAI 469
V A V+ Y G +
Sbjct: 722 NTPVLPPADAPTAPFVD-PRYNGPV 745
>gi|158521417|ref|YP_001529287.1| type II and III secretion system protein [Desulfococcus oleovorans
Hxd3]
gi|158510243|gb|ABW67210.1| type II and III secretion system protein [Desulfococcus oleovorans
Hxd3]
Length = 538
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 60/271 (22%), Positives = 106/271 (39%), Gaps = 32/271 (11%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS----------ITGSSSGPSKSFAADFGGKFVS 240
QV ++ I E +D +Q+G Q TG++ GP+ D G V+
Sbjct: 259 RPTRQVLIEAHIVETSKDTARQLGIQWGGVAKDKQHSWFTGATEGPAGQTLFDANGVPVA 318
Query: 241 EGGDFSVKGVL------------------DRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ + L ALE + L+ P++T +
Sbjct: 319 ANPTGNWAANFPASLGNTGLSLGYIYQDLGQSLIAAQLTALEEDGKLNILSSPSITTLDN 378
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG--RIGLRIQTEVSEPV 340
+A SG ++TV ++ + L TP ++ R+ ++ + +
Sbjct: 379 SAAVIESGRDVPFQTV--EDNEVNIEWKKAVLSLAVTPHIIDASTLRVKIKTHKDELDWS 436
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
V P+ + A+T + L G T V+ GL K Q + G+PLL +IPILG FR+
Sbjct: 437 NAVLTDGNPTIITKNAETEMILFDGQTTVIGGLNKQSSSQSQFGVPLLGRIPILGFFFRS 496
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
+ + + E+ I TP +++P + D
Sbjct: 497 TSRSNDMEEVLIFITPHILEPYTAATGAGAD 527
>gi|109896501|ref|YP_659756.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas
atlantica T6c]
gi|109698782|gb|ABG38702.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas
atlantica T6c]
Length = 550
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 61/249 (24%), Positives = 99/249 (39%), Gaps = 23/249 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
QV L+ I EV Q G + ++SG + S A G +S
Sbjct: 279 RQVILEARILEVSLSDGYQQGINWTEVLANSGSTDFQFSTTAGSLGDAISASLGGITSLS 338
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302
F VL+ L+ ++ L+ P +TAI+ Q A G + T SS
Sbjct: 339 FVNKDFSGVLNLLQTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSQSTVTAATS 398
Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PS 350
+T G+ L TP + + G + L + V E + +
Sbjct: 399 STTPNIELTPFFSGIALDVTPQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLAA 458
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R++DT + SG +V+ GL++ I + + PLL IP+LG LF+N + + E+
Sbjct: 459 SNIRESDTIIHARSGEIVVIGGLMQSIISETESKTPLLGDIPLLGNLFKNRQETETKKEL 518
Query: 411 FIAATPFLV 419
I P +V
Sbjct: 519 VILLRPTVV 527
>gi|2506491|sp|P31701|GSPD_PECCC RecName: Full=General secretion pathway protein D; AltName:
Full=Pectic enzymes secretion protein outD; Flags:
Precursor
Length = 650
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 52/263 (19%), Positives = 101/263 (38%), Gaps = 25/263 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
++V+ L+I QV ++ IAEV+ +G Q + + +
Sbjct: 323 EQVIAQLDIRRP-QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGA 381
Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ GG + + ++ ++ AL + LA P++ +
Sbjct: 382 DQFRRDGTLGTAATTALGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNME 441
Query: 285 ASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
A+F G + +T S +V G+ L P + + L I+ EVS
Sbjct: 442 ATFNVGQEVPVLAGSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVA 501
Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ ++ R + V + SG T+V+ GLL + +PLL IP+LG L
Sbjct: 502 DAASSSSTNLGATFNTRTVNNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYL 561
Query: 398 FRNSRFNREETEIFIAATPFLVK 420
FR++ ++ + + P +++
Sbjct: 562 FRSNSTETKKRNLMLFIRPSIIR 584
>gi|118497727|ref|YP_898777.1| Type IV pili secretin component [Francisella tularensis subsp.
novicida U112]
gi|194323699|ref|ZP_03057475.1| type IV pilus secretin PilQ family protein, putative [Francisella
tularensis subsp. novicida FTE]
gi|82453010|gb|ABB76143.1| PilQ [Francisella novicida]
gi|118423633|gb|ABK90023.1| Type IV pili secretin component [Francisella novicida U112]
gi|194322063|gb|EDX19545.1| type IV pilus secretin PilQ family protein, putative [Francisella
tularensis subsp. novicida FTE]
Length = 594
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 71/420 (16%), Positives = 154/420 (36%), Gaps = 38/420 (9%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
P A + + + +++ ++ + + +D+++V P ++V+ S
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
L K + + + L++ +R + + + FI + +
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292
Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
+ +G + + + S A + T + K+V+N ++I DQV ++
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------------EGGD 244
I EV R ++GF + + S + +
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPGPTPTPVDTFVGTTA 409
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ + + + ALE + +A P L + Q A F G+ + ++++GA
Sbjct: 410 KLMYTIAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGA 468
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTT 359
+V + + L TP + G I + I + P + R+ T
Sbjct: 469 AAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTK 528
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++
Sbjct: 529 VMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 588
>gi|168750719|ref|ZP_02775741.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4113]
gi|168757329|ref|ZP_02782336.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4401]
gi|168763015|ref|ZP_02788022.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4501]
gi|168769207|ref|ZP_02794214.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4486]
gi|168769317|ref|ZP_02794324.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4486]
gi|168776690|ref|ZP_02801697.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4196]
gi|168783068|ref|ZP_02808075.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4076]
gi|168789906|ref|ZP_02814913.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC869]
gi|168802552|ref|ZP_02827559.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC508]
gi|195940092|ref|ZP_03085474.1| EtpD [Escherichia coli O157:H7 str. EC4024]
gi|254667451|ref|YP_003082137.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359]
gi|261225635|ref|ZP_05939916.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK2000]
gi|187767920|gb|EDU31764.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4196]
gi|188015158|gb|EDU53280.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4113]
gi|188999508|gb|EDU68494.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4076]
gi|189355641|gb|EDU74060.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4401]
gi|189361611|gb|EDU80030.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4486]
gi|189361663|gb|EDU80082.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4486]
gi|189366756|gb|EDU85172.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC4501]
gi|189370555|gb|EDU88971.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC869]
gi|189375476|gb|EDU93892.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
EC508]
gi|254595803|gb|ACT75163.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359]
gi|320187907|gb|EFW62576.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
EC1212]
gi|326337158|gb|EGD60994.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
1125]
gi|326347656|gb|EGD71374.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
1044]
Length = 650
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 21/269 (7%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ V++ L+I QV ++ IAE++ +G Q + S
Sbjct: 319 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 377
Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ + + + ++ +L AL ++ LA P++
Sbjct: 378 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 437
Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+ A+F G + + S +T +V G+ L P + + L I+
Sbjct: 438 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 497
Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
EVS + + ++ R + + +G T+V+ GLL I+ + +PLL I
Sbjct: 498 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDI 557
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
P+LG LFR + + + P +++
Sbjct: 558 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 586
>gi|90412971|ref|ZP_01220969.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
3TCK]
gi|90325986|gb|EAS42425.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
3TCK]
Length = 559
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 78/312 (25%), Positives = 119/312 (38%), Gaps = 35/312 (11%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
++E ++ G RTI S +A + + ++ + SKK + Q
Sbjct: 232 QLEKAVQAMIGSGEGRTIVVSPQASLISVRAYPNELREVKEFLGVSKK-------RLKRQ 284
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS------KSFAADFGGKFVSEGGDFSVKG 249
V L+ I EV Q G S SS G + AA GG +S
Sbjct: 285 VVLETKIMEVTLSDGYQQGVNWSNITSSIGGTDIIFGRTGPAALPGGDAISSLLGGQTNV 344
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------- 302
+ +FE VL LE + L+ P +TA + Q A GG + T S
Sbjct: 345 TISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSGDNS 404
Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-------- 351
+T G+ L TP + G + L + V E V D+ +
Sbjct: 405 TSAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKDIDLGATFGVYKLPL 464
Query: 352 ---RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
+R++D+ + SG +V+ GL+K I +P L IP LG LFRN + +T
Sbjct: 465 AKSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVQSKT 524
Query: 409 EIFIAATPFLVK 420
E+ I P +V
Sbjct: 525 ELVILLKPTVVD 536
>gi|114045976|ref|YP_736526.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7]
gi|113887418|gb|ABI41469.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7]
Length = 561
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 23/297 (7%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L ++ ++ V + L + +N + QV L+ I EV
Sbjct: 241 TLSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEV 300
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
Q G Q G + G +S+ S+ GV F T++
Sbjct: 301 TLSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMIS 360
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
L+ + L+ P +TA + Q A G + T S +T +T
Sbjct: 361 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFF 420
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVEL 362
G+ L TP + G + L + V + + S +R++DT +
Sbjct: 421 SGIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRA 480
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
SG +V+ GL+K + ++ +PLL IP++G LF+N +++TE+ I P +V
Sbjct: 481 ASGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537
>gi|114561562|ref|YP_749075.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400]
gi|114332855|gb|ABI70237.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400]
Length = 682
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 26/283 (9%)
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ + + + + V L+ + QV ++ + V+ D+ + +G + I
Sbjct: 397 SVAVDERTNTLLVKDTAEILENVHRLIEVLDIPIKQVLIEARMVTVKDDVSEDLGIRWGI 456
Query: 220 TGSSSGPSKSFAADFGGKFVSEGG---------------------DFSVKGVLDRFSFET 258
T S + F V + D +
Sbjct: 457 TDQQGSKGTSGTIGGATSIANGTIPSIDDRLNVNLPAAASSATSIAFHVAKLADGTVLDL 516
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
L ALE+ +A P +T + +SA G + Y +SS GAT+VT + L
Sbjct: 517 ELSALEQENKGEIIASPRITTSNQKSAYIEQGVEIPYVESASS-GATTVTFKKAVLSLRV 575
Query: 319 TPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
TP + R+ L ++ + G+ + ++ T V + +G TIVL G+ +
Sbjct: 576 TPQITPDDRVILDLEITQDSQGTTVATATGEAVAIDTQRIGTQVLVDNGETIVLGGIYQQ 635
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
++ +P+L IP++G LFRNS E E+ I TP +V
Sbjct: 636 NLISRVSKVPVLGDIPLVGFLFRNSTDTNERQELLIFVTPKIV 678
>gi|294339205|emb|CAZ87559.1| Putative Type IV pilus biogenesis secretin PilQ [Thiomonas sp. 3As]
Length = 746
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/354 (17%), Positives = 116/354 (32%), Gaps = 49/354 (13%)
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN- 174
+ A + L V+L G+ + + R + T L+ N
Sbjct: 393 NYQKAATVVAMLTGAAGGVQSGTTATPSPVLLPGLSSSAAPTSRILSPRGTVLADPRTNQ 452
Query: 175 ---QYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
S ++V L+ + QV ++ I E + +G + ++ +
Sbjct: 453 IFVTDIPSKLEEVAQLIAKIDKPVRQVMIEARIVEASDQFGRSLGVKLGFLNNNLPGTGG 512
Query: 230 FA----------------------------------------ADFGGKFVSEGGDFSVKG 249
S+
Sbjct: 513 NTPGVSVSGDYLGVSQQTGQNNATGATVTDSQFVNLPAFGLAGSLLAGATPSSLGISLFN 572
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
L A+E + ++ P + A+ G + Y+ +SS GAT+VT
Sbjct: 573 AAANRFINLELSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-GATAVTF 631
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ L TP + G + + E+ + G + +PS T V++ +GGT+V
Sbjct: 632 KKAVLSLDVTPQITPDGNVIM--NVEIHKDSPGASTAGVPSINTNTVATQVQVENGGTVV 689
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
L G+ Q + +PLL IP+LG LF+N+ + E+ + TP +V
Sbjct: 690 LGGIYTSQEQNQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFLTPKIVTSAD 743
>gi|307825428|ref|ZP_07655647.1| general secretion pathway protein D [Methylobacter tundripaludum
SV96]
gi|307733603|gb|EFO04461.1| general secretion pathway protein D [Methylobacter tundripaludum
SV96]
Length = 712
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 61/305 (20%), Positives = 118/305 (38%), Gaps = 22/305 (7%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
V + + + +++ + Q V+ L++ QV + TI V+
Sbjct: 393 EVANVGEVRIISDVANNSVIVVATPQEYEVIL-PVIKQLDL-LPLQVLIDATIVSVKLTD 450
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----FSVKGVLDRFSFETVLHALER 265
+ G Q + S S A G + + + + +L A
Sbjct: 451 SLKYGIQWFLDHGGSSISSGNGAATLGSIATASAAAFTSGGLTAIYNSGIVNALLSAQAN 510
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-------------ATSVTTHDY 312
+ ++ P+L ++ Q A G Q +T + + +S+ D
Sbjct: 511 KGNVNIISSPSLMVLNNQEAKINVGDQVPIQTGTLGSVVGSGGTTGATTAIQSSIQYKDT 570
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371
GV L TP V + G + + I+ VS V P+ + ++ +++V + TIVL
Sbjct: 571 GVTLEVTPRVNANGMVIMDIKQTVSSAVKTETGVNTSPTIQKKEIESSVAVQDSETIVLG 630
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL+ ++ GIP L+++P +G LF N+ + E+ + TP +VK + +D
Sbjct: 631 GLIDNNNSNAIGGIPWLNELPWIGPLFGNTDRENIKNELVVLITPRVVK--SKQDSRLIS 688
Query: 432 DHYSV 436
D +
Sbjct: 689 DEFKR 693
>gi|113971816|ref|YP_735609.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4]
gi|113886500|gb|ABI40552.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4]
Length = 561
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 23/297 (7%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L ++ ++ V + L + +N + QV L+ I EV
Sbjct: 241 TLSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEV 300
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
Q G Q G + G +S+ S+ GV F T++
Sbjct: 301 TLSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMIS 360
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
L+ + L+ P +TA + Q A G + T S +T +T
Sbjct: 361 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFF 420
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVEL 362
G+ L TP + G + L + V + + S +R++DT +
Sbjct: 421 SGIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRA 480
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
SG +V+ GL+K + ++ +PLL IP++G LF+N +++TE+ I P +V
Sbjct: 481 ASGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537
>gi|56476093|ref|YP_157682.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum
aromaticum EbN1]
gi|56312136|emb|CAI06781.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum
aromaticum EbN1]
Length = 771
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 82/455 (18%), Positives = 164/455 (36%), Gaps = 72/455 (15%)
Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
L + P + A + + + ++ ++ + + PV + V D
Sbjct: 171 APLAEALTGPLSKPVTLQFRDAPLRVVFEALSHAAGLNFVFDRDVRVDTPV---TLFVRD 227
Query: 74 PTKADV------------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
+ +V V + ++ ++ + + + L D
Sbjct: 228 SSVDEVIKLVAVTQQIERKVLNANSVLIYPATPAK-----QRDYQELVTRSFYLANADAK 282
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
+ L++ + ++ ++ + +V+ +AV L+E L+
Sbjct: 283 QAQSLLKQLVKSKDMFIDEKLNLLVIKDTP-------QAVRLAERLLAS----------- 324
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222
L++A + V L+V + EV R L+++G + G
Sbjct: 325 ------LDVAEPE-VMLEVEVLEVARSKLRELGLDFPDEIGYGLLRSQQQITQTQTAAGI 377
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
S ++ V + G + + L A LA P + +
Sbjct: 378 VSEVVTLPGSEIAPGVVPRAQWGDLTGYVTNPALTLRLRA--EDGDTNLLANPRIRVKNR 435
Query: 283 QSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
+ A G + T +S+ + SV+ D G+ L P V + +++ EVS
Sbjct: 436 EKAKIHIGEKLPVFTTTSTANVGVSASVSYLDVGLKLDVEPAVTLDDEVAIKVALEVSNI 495
Query: 340 V---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
V G + R A T + L +G T VLAGL+ D+ ++ + +P L +P++G
Sbjct: 496 VREVPGPSDSLAYQVGTRSATTVLRLRNGETQVLAGLISDEERRSAQRLPGLGDLPLIGR 555
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
LF + R N +TEI + TP +V+ + L+R D
Sbjct: 556 LFSSERNNASKTEIVLLITPRIVRNIVAPSLARAD 590
>gi|197336466|ref|YP_002157259.1| general secretion pathway protein D [Vibrio fischeri MJ11]
gi|197317956|gb|ACH67403.1| general secretion pathway protein D [Vibrio fischeri MJ11]
Length = 678
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 55/293 (18%), Positives = 107/293 (36%), Gaps = 46/293 (15%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSS 224
+ K V+ L+I QV ++ I E+ +G Q I S++
Sbjct: 321 TAPPDVMRAMKDVIAQLDIR-RAQVLIEALIVELAEGDGVNLGVQWGNLETGAMIQYSNT 379
Query: 225 GPSKSFA--------------------------------ADFGGKFVSEGGDFSVKGVLD 252
G S + + GG +
Sbjct: 380 GASIGATMVGLEEAKDTTTTTAVYDENGKFVRNETTTEEGSYDALAGALGGVQGAAVSIM 439
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSV 307
+ ++ A+ + L+ P++T + ASF G + T S + +V
Sbjct: 440 MGDWAALVTAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSSNDNPFQTV 499
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ G+ L P + + L I+ EVS + A D+ + R+ +T+V + G
Sbjct: 500 DRKEVGIKLKVVPQINEGDSVRLDIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVQDGQM 558
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+VL GL+ + + + +P L IP+LG LF+++ E+ + + P +++
Sbjct: 559 LVLGGLIDERALESESKVPFLGDIPVLGYLFKSTSTQVEKKNLMVFIKPTIIR 611
>gi|2853000|gb|AAC38777.1| XqhA [Pseudomonas aeruginosa]
Length = 713
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 96/508 (18%), Positives = 170/508 (33%), Gaps = 60/508 (11%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
Q+T + + P+ L + ANA +++ I + + I L++ +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206
Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
D++ V+ A+V+ S GK+ V+ + +L + L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262
Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
+L A+S + D L G + + ++
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAVTLGEIGESLHGERGQDGRGSGKRGLLVRADE 322
Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
L+ + ++ L++ Q+ ++ I E+ +I +G Q ++
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381
Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
FA G L F ++ AL R + L+
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441
Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
P+L + Q A G ++T S SS T+V D GV L TP +
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501
Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ L I+ E+S R +TV G IVL GL++DD+Q+
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSR 561
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
+PLL IP +G LFR+SR R + + + P +V+ A +
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606
Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
R I + A+ + G I
Sbjct: 607 HGRYRSIQLLRGAAGEPARPLFEDAGAI 634
>gi|59713081|ref|YP_205857.1| general secretion pathway protein D [Vibrio fischeri ES114]
gi|59481182|gb|AAW86969.1| general secretion pathway protein D [Vibrio fischeri ES114]
Length = 673
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 54/315 (17%), Positives = 114/315 (36%), Gaps = 48/315 (15%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ Q+ + + + + + K V+ L+I QV ++ I E+
Sbjct: 295 SSSQNRNDVMISAHVDTNSLVITAPPDVMRAMKDVIAQLDIR-RAQVLIEALIVELAEGD 353
Query: 210 LKQIGFQHS-------ITGSSSGPSKSFA------------------------------- 231
+G Q I S++G S
Sbjct: 354 GVNLGVQWGNLETGTMIQYSNTGASIGATMVGLEEAKDKTTATAVYDENGKFLRNETTTK 413
Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ + GG + ++ ++ A+ + L+ P++T + ASF G
Sbjct: 414 EGSYDALAGALGGVQGAAVSIMMGDWKALVTAVSTDSNSNILSSPSITVMDNGEASFIVG 473
Query: 291 GQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
+ ++ +V + G+ L P + + L I+ EVS + A
Sbjct: 474 EEVPVLTGSTSGSNNENPFQTVDRKEVGIKLKVVPQINEGDSVRLDIEQEVSNVLGANGA 533
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
D+ + R+ +T+V + G +VL GL+ + + + +P L IP+LG LF+++
Sbjct: 534 VDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTRV 592
Query: 406 EETEIFIAATPFLVK 420
E+ + + P +++
Sbjct: 593 EKKNLMVFIKPTIIR 607
>gi|10955268|ref|NP_052609.1| EtpD [Escherichia coli O157:H7 str. Sakai]
gi|149930769|ref|YP_001294686.1| w0022 [Escherichia coli]
gi|37695757|gb|AAR00419.1|AF401292_20 w0022 [Escherichia coli]
gi|2598401|emb|CAA70955.1| etpD [Escherichia coli]
gi|3337000|dbj|BAA31759.1| Type II secretion pathway related protein [Escherichia coli O157:H7
str. Sakai]
Length = 585
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 21/269 (7%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ V++ L+I QV ++ IAE++ +G Q + S
Sbjct: 254 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 312
Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ + + + ++ +L AL ++ LA P++
Sbjct: 313 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 372
Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+ A+F G + + S +T +V G+ L P + + L I+
Sbjct: 373 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 432
Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
EVS + + ++ R + + +G T+V+ GLL I+ + +PLL I
Sbjct: 433 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDI 492
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
P+LG LFR + + + P +++
Sbjct: 493 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 521
>gi|332184221|gb|AEE26475.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida
3523]
Length = 596
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 71/423 (16%), Positives = 154/423 (36%), Gaps = 40/423 (9%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
P A + + + +++ ++ + + +D+++V P ++V+ S
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
L K + + + L++ +R + + + FI + +
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292
Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
+ +G + + + S A + T + K+V+N ++I DQV ++
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------EG 242
I EV R ++GF + + S + +
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPGPTPTPTPVDTFVGT 409
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ + + ALE + +A P L + Q A F G+ + ++++
Sbjct: 410 TAKLAYTIAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATAS 468
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKAD 357
GA +V + + L TP + G I + I + P + R+
Sbjct: 469 GAAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREIT 528
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T V G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP
Sbjct: 529 TKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPK 588
Query: 418 LVK 420
+++
Sbjct: 589 IIQ 591
>gi|207725091|ref|YP_002255488.1| gspd-related protein [Ralstonia solanacearum MolK2]
gi|206590321|emb|CAQ37282.1| gspd-related protein [Ralstonia solanacearum MolK2]
Length = 754
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 85/472 (18%), Positives = 161/472 (34%), Gaps = 58/472 (12%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
+ + + P E + A + + + ++ +K ++ V V + + T A
Sbjct: 176 ALSAAFRKPISLEFHDAQMRQVFEVLSRASGLNFVFDKD--VRTDQKV-TVFLRNSTVAS 232
Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
VV V + ++ + + +L D + T
Sbjct: 233 VVNTVLLTNQLEQRVLDGNAILIYPNTPAK-----QRDYQPLTVRTFVLSNSDAKDVANT 287
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L+ + +I V+ + +V+ IQ +++ V + E
Sbjct: 288 LKTILKTRDIVVDEKRNMIVMRDTPDAIQAAEKLVAVHEM-------------------- 327
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
E +V L+V I EV+R L+ +G Q S + + S +
Sbjct: 328 -----PEPEVMLEVEILEVKRSRLQDLGIQLPSQLSLTPLASSSGGTLTLDDLRHLNPTR 382
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
+ + + ++A LA P + + + A G + T +S+
Sbjct: 383 IGATVSPLNVN--VNAAVTD--TNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGFV 438
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360
A +V D G+ L PTV + +RI EVS+ V + R A T +
Sbjct: 439 AENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSIAYEIGTRNATTLL 498
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L G +LAGL++D+ + +P L IP LG LF N+ ++EI ++ TP +++
Sbjct: 499 RLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRVIR 558
Query: 421 PVAMRDLSRPDDHYSVEDDAKA---FFFNRVNKIYGPKEASEVEGQNYKGAI 469
P +L + E + R P +
Sbjct: 559 PAQRPNLGSAEFDSGTESSLRLKSSMLHERSEPAPNPVAPGAAPTPSTDATA 610
>gi|317051459|ref|YP_004112575.1| general secretion pathway protein D [Desulfurispirillum indicum S5]
gi|316946543|gb|ADU66019.1| general secretion pathway protein D [Desulfurispirillum indicum S5]
Length = 638
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 91/479 (18%), Positives = 167/479 (34%), Gaps = 84/479 (17%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
L+ T + L P L + ANA +I+ + + I L++
Sbjct: 134 LRNTPAAELIPILRPLVPQYGHLAGVPSANAIIISDHAENVSRIADIVDRLDQ------- 186
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ---------MLNLDI 114
+ + + + D A V G+ G I G+Q ++ +
Sbjct: 187 EESEAIAIVDLQHAWV-----------GQLAGLLEKIATPQGGQQQRSPAAGIRIIADER 235
Query: 115 LIERDIAHLEMTL---RRFIADSNIRVEMVSDTVVL------------------------ 147
+ + L R+ I +I V+ T+VL
Sbjct: 236 SNRLILKGTQKALEEYRQLIDSLDIPVKTTGSTMVLRLSHADATKMAELLKGLVEGRTAS 295
Query: 148 ---HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTI 202
G +++ ++ L+ + ++ ++ L++ QV ++ I
Sbjct: 296 ASGSGRDSAPAPAEKFSIQADESLNALVIRAEPATMAEIQSIIAQLDVR-RAQVLIEAVI 354
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-----------------KFVSEGGDF 245
EV D L Q+G Q + + F +S+G
Sbjct: 355 VEVVGDSLNQLGVQLAARSAGDTLGPIGGTSFSNAGTSLSNILTSIATQTPPTISDGMSL 414
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSS 300
V +L AL T L+ P++ + Q AS G Y S
Sbjct: 415 GVATTSGSVEMGALLTALASVTNANLLSTPSILTLDNQEASILVGQNIPVRTGTYSHDSG 474
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ T++ D G+VL TP++ + ++++ E S + D R+ TT+
Sbjct: 475 TNPFTTIQRQDVGIVLKTTPSIYEGNSVRMQVELEASSVL--TEGTDGIITNKREIITTI 532
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ TIVL GL+KDD+Q++ +PLL IP+LG LF+ R E+ + + P ++
Sbjct: 533 LADNNETIVLGGLIKDDVQEVVSKVPLLGDIPLLGRLFQARRQRVEKRNLLVFLRPTIL 591
>gi|206558684|ref|YP_002229444.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315]
gi|198034721|emb|CAR50588.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315]
Length = 541
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 74/447 (16%), Positives = 148/447 (33%), Gaps = 57/447 (12%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
+ P++ P A + + + + G + + + + + + A
Sbjct: 78 APGPALEGPPIPLAPPARMSDAAARQPGDA-------DDARRISLNLQGVGLAAAFDAIA 130
Query: 78 DVVVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAH------LEMTLRRF 130
+ + G+ V G + L ++ + + +
Sbjct: 131 RFTGLN----IVVGEQVRGTVTLRLNNVRWREAFDTLLDMHGLAMSRRGNVIWVTPAAEL 186
Query: 131 IADSNIRVEMVSDTVVLHGMVRTI-----QDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
A R +M + L + +Q L Q ++ +++
Sbjct: 187 AARERERFDMHARAADLEPLASRTFMLHYPRAQDVQRLLAGATGQRLLSKRGAAAADPRT 246
Query: 186 NLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
NLL + QV ++ I E + + +G + ++ PS
Sbjct: 247 NLLFVTDLAPRIVQIAGLIDAIDRPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPS 306
Query: 228 K-------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
AA G F + F++ + L ALE + ++
Sbjct: 307 AEGTSFTADARNALDLAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSR 366
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P + A G + Y+ G + V + L P + GR+ L +
Sbjct: 367 PRVVTADRVKAIVEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL-- 423
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
+V++ +G P+ + T VE+ +GGT+ + G+ + + +PLL KIPIL
Sbjct: 424 DVTKDSVGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPIL 483
Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421
GALFR+ + E+ + TP +V P
Sbjct: 484 GALFRHRAQRDQRNELVVFITPTVVDP 510
>gi|269103980|ref|ZP_06156677.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163878|gb|EEZ42374.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 583
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 62/413 (15%), Positives = 148/413 (35%), Gaps = 32/413 (7%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
+ + + ++ ++ + V + + D V P D+++ S L
Sbjct: 176 FQDVPVRNVLQLVAEYNDFNLVVSDTVQGNVTLRLDD--VPWPQVLDIILQSKG---LDK 230
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ G +I + ++ +R L I + + ++D ++
Sbjct: 231 RVQGSVVLIAPKSELATNERQEMEAKRKEDELASLRSELIQINYAKAGDIADLLLGTKDG 290
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
++ + ++ + E + ++ + S ++++ L+I + QV ++ I V +
Sbjct: 291 VSMLSQRGSLHVDERTNAIIIKDIPESIDSIEEIITALDIPVK-QVQIEARIVTVDEGDI 349
Query: 211 KQIGFQHSITGSSSGPSKS----------------------FAADFGGKFVSEGGDFSVK 248
++G + + + + + G
Sbjct: 350 DELGVRWGVVNQNGSTTIGGSIEGNLASSGLLGDDATVDDFLNVNLGAITPGASSIAFQV 409
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
L + L AL+ + ++ P L + + A++ G + ++S+GA SV
Sbjct: 410 AKLGDILLDLELSALQAESKAEIISSPRLVT-TNKKAAYIEQGTEIPYLEAASSGAVSVD 468
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGG 366
+ L TP + ++ L + + G+ + ++ T V + +G
Sbjct: 469 FKKAVLSLMVTPQITPDDKLVLDLLVTQDKVGETVVTGTGEAVAIDTQRIGTQVLVNNGE 528
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
T+VL G+ + + +PLL IP LG LFR+ + E+ I TP ++
Sbjct: 529 TVVLGGIYQHQVNNSVRKVPLLGDIPGLGVLFRHKLQEMGKRELLIFVTPKII 581
>gi|207744652|ref|YP_002261044.1| general secretory pathway protein d [Ralstonia solanacearum
IPO1609]
gi|206596059|emb|CAQ62986.1| general secretory pathway protein d [Ralstonia solanacearum
IPO1609]
Length = 777
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
A QV ++ I EV D Q+G Q + +FG
Sbjct: 401 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 460
Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
G VS + +L AL ++ L+ P
Sbjct: 461 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 520
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
L + + A G T S + T + D G+ L P + G +
Sbjct: 521 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLV 580
Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P
Sbjct: 581 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 640
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
L IPILGALFR+ R++T + + P++++ A + D+ Y
Sbjct: 641 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 686
>gi|323135898|ref|ZP_08070981.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242]
gi|322398989|gb|EFY01508.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242]
Length = 817
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 18/260 (6%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+V+ L++ +QV L+ TIAEV+ + + G + + + S +A+ G +
Sbjct: 510 QVIETLDV-MPNQVFLEATIAEVKLNDTLRFGVRWFMQTHQNLFGFSSSANPAGPLPNTP 568
Query: 243 GDFSVKGVLDRFSF------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
++ G +F + L+AL T + + P+LT + + A G
Sbjct: 569 LGTNLLGANVGANFPGFAYAFRAFNQQVTLNALNAITEVNVIQTPSLTVLDNRQAMLQVG 628
Query: 291 GQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
Q +T+SS SV + GV+L TP + GRI L ++ EVS G
Sbjct: 629 DQIPVQTLSSVSAIGNQFNSVNYTNTGVILAITPHISESGRIMLELEQEVSNVDPNTPPG 688
Query: 347 DM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+ P+ + R+ T V + +++L GL+KD + IP+ +P+ G LF++
Sbjct: 689 SITPTIQQRRVKTQVVVNDSESLMLGGLVKDQRGRAATQIPVAGDVPVFGNLFKDKGDAV 748
Query: 406 EETEIFIAATPFLVKPVAMR 425
++TE+ I TP +V+ +
Sbjct: 749 DKTELVIMITPHVVRSLDEG 768
>gi|153840376|ref|ZP_01993043.1| general secretion pathway protein D [Vibrio parahaemolyticus
AQ3810]
gi|149745960|gb|EDM57090.1| general secretion pathway protein D [Vibrio parahaemolyticus
AQ3810]
Length = 552
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 69/454 (15%), Positives = 153/454 (33%), Gaps = 84/454 (18%)
Query: 49 KISIGLNKVIIL-QVPVDVQDV-LVSDPTKADVVVHSPRT---MYLFGKNVGQAN----- 98
I + + ++ ++ ++ V D V + + + + N
Sbjct: 39 NIILITGRAAVVNRLAEIIKRVDQAGDKEIELVELRNASAAEMVRIVEALNKTTNQKSTP 98
Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
++ +++ D + + L L +A ++ D V
Sbjct: 99 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 158
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190
VL G+ +Q ++A + + + A+ ++ V++ L+I
Sbjct: 159 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 218
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------------- 219
QV ++ I E+ +G Q
Sbjct: 219 R-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAVIQYGNTGAPIGQVMVGLEEAKDVTK 277
Query: 220 --------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
T + D+ + GG + + ++ A+ +
Sbjct: 278 TESYWNSDTNKWENRQYTEEGDYSTLASALGGVNGAAMSIVMGDWTALISAVASDSNSNI 337
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPG 326
L+ P++T + ASF G + T ++ +V + G+ L P +
Sbjct: 338 LSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGD 397
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
+ L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + +P
Sbjct: 398 SVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVP 456
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
LL IP+LG LF+++ E+ + + P +++
Sbjct: 457 LLGDIPVLGHLFKSTSTQTEKRNLMVFIKPTIIR 490
>gi|88705191|ref|ZP_01102902.1| GSP-D family Protein [Congregibacter litoralis KT71]
gi|88700281|gb|EAQ97389.1| GSP-D family Protein [Congregibacter litoralis KT71]
Length = 728
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 36/291 (12%)
Query: 163 LSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ E + + + ++ ++++ ++I QV ++ I + D+ K++G Q
Sbjct: 434 IVEARTNSLIVTETSAKLAEIRELIDRVDIPIR-QVMIESRIVIAQSDLEKELGIQWGGG 492
Query: 221 GSSSGPSKSFAADFG-----------------------------GKFVSEGGDFSVKGVL 251
+ + + G S F+V
Sbjct: 493 YLEPDANGNILSVTGDATNAVNLNNSVINGTQPDLSYPGALLVDLGSGSATSGFAVGFTS 552
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
L ALE A +++P + Q A+ SG + ++ ++S GAT+V +
Sbjct: 553 SELFLTAELSALEAAGKSEVVSQPKVITGDKQPATIKSGTEIPFQQAAAS-GATAVQFKE 611
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
+ L TP + RI L + V + V G +P+ + T V + +G T+
Sbjct: 612 AVLKLDVTPNITPDDRILLDLVINQDSVGDLVPSGQGGLIPAIDTTQLTTQVLVGNGETV 671
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VL G+ + + + +P +P +GALFRN R +TE I TP ++
Sbjct: 672 VLGGVFRTENLETTSKVPFFGDLPYVGALFRNESSQRTKTETLIFITPRIL 722
>gi|262370143|ref|ZP_06063470.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262315182|gb|EEY96222.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 785
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 62/268 (23%), Positives = 101/268 (37%), Gaps = 31/268 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L+ QV ++ TI EV + Q+G Q ++ SSG + G S
Sbjct: 372 ESAIQQLDTR-RQQVLIEATILEVEGNDADQLGVQWAMGDLSSGVGIINFDNIGSSLKSI 430
Query: 242 GGDFSV-----------------------KGVLDRFSFETVLHALERATAIRTLAEPTLT 278
++ R + ++ AL+ T L+ P++
Sbjct: 431 AANYLTGGGAGAASAIGAGGSLILGDYKEGSDGSRQLYGAMIQALKSNTKSNLLSTPSIV 490
Query: 279 AISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+ + A G + T S S T++ D GV L P + G I L
Sbjct: 491 TMDNEEAYIVVGENVPFVTGSVSTTSSGTANPYTTIERKDVGVTLKVVPHIGEGGTIRLE 550
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
I+ EVS+ R T+V G TIVL GL+ D+ ++ IP L I
Sbjct: 551 IEQEVSDVKANKGQAQDLVTSKRAIKTSVLAEHGNTIVLGGLISDNTSYSRQSIPGLGAI 610
Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
P LG LFR+ + ++ + + P +V
Sbjct: 611 PGLGRLFRSDGKSDQKRNLLVFIHPTIV 638
>gi|238797288|ref|ZP_04640789.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969]
gi|238718925|gb|EEQ10740.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969]
Length = 406
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 72/380 (18%), Positives = 137/380 (36%), Gaps = 31/380 (8%)
Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
V V AD + + + G ++ L+ +Q L + + + A E +
Sbjct: 31 VSVVLQALADYQQLN---LVVAAGVSGNISLRLVDVPWEQALAIILRMGHLKAEREGAVM 87
Query: 129 RFIADSNIRVEMV-SDTVVLHGMVRT---IQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
+ +I ++ + + A ++E+ + + + K
Sbjct: 88 MVFTEQDIEERQQRAEQKAAPDSMSSLTLALQHADAEHVAESLEEGGLLSPLGSVVADKR 147
Query: 185 MNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
N L I Q+ L I + R+ L+++G + +
Sbjct: 148 TNTLLIRDTPASLAILKGWLAEMDLPLQQIQLAAHIVTMSRENLQELGVRWGMGEPPHTT 207
Query: 227 S---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
S F + + F+V + R + ALE+ + +A P L A Q
Sbjct: 208 SLRVNDFNVNLPLANSAVSAGFNVARIGGRLLELEL-SALEQENQVDIIASPRLVASHQQ 266
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
+AS G Y GA S+ + + + TP +L G+I L ++ + P + +
Sbjct: 267 TASIKQGSDIPYTVSRGEKGAASIEFKEAVLGMEVTPKILRNGKITLNLKISQNMPGMTI 326
Query: 344 --NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ ++ T + + G TIVL G+ + Q +P+L+ IP LGALF+
Sbjct: 327 KRGDTEALLIDKQEIKTQITVNDGETIVLGGIFQQKNSQAVNKVPILADIPWLGALFKQD 386
Query: 402 RFNREETEIFIAATPFLVKP 421
+ E+ I TP L+
Sbjct: 387 AQQQNRRELVIFITPRLISA 406
>gi|304412646|ref|ZP_07394250.1| general secretion pathway protein D [Shewanella baltica OS183]
gi|307307256|ref|ZP_07586993.1| general secretion pathway protein D [Shewanella baltica BA175]
gi|304348990|gb|EFM13404.1| general secretion pathway protein D [Shewanella baltica OS183]
gi|306910311|gb|EFN40743.1| general secretion pathway protein D [Shewanella baltica BA175]
Length = 704
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 65/303 (21%), Positives = 111/303 (36%), Gaps = 45/303 (14%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ +ET + + V+N L+I QV ++ I EV G Q +
Sbjct: 315 IMAHAETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAS 373
Query: 220 TGSSSGPSKSFAADFG-------------GKFVSEGGDF--------------------- 245
G + G G V G +
Sbjct: 374 KGGLGTQFNNLGPTIGEIGAGVWAAQPIEGDLVCSGTNLDNCKRNPDKQGDVTLLAQALG 433
Query: 246 ---SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKT 297
+ + F ++ A+ T LA P++T + Q ASF G + +
Sbjct: 434 KVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTAS 493
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
S+S +V + GV L P + + L I+ EVS S+ R+
Sbjct: 494 SSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRRLT 551
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TTV SG +VL GL+ +++Q+ + +P L IPI+G LF++S + + + I P
Sbjct: 552 TTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPT 611
Query: 418 LVK 420
+++
Sbjct: 612 IIR 614
>gi|262166741|ref|ZP_06034478.1| type II secretory pathway component PulD [Vibrio mimicus VM223]
gi|262026457|gb|EEY45125.1| type II secretory pathway component PulD [Vibrio mimicus VM223]
Length = 653
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 50/321 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
G + + V ++ + S +V+ L+I QV ++ I E
Sbjct: 272 KGTGQQTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 330
Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231
+ +G Q I ++G S
Sbjct: 331 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKRPIRDSNTGAIKY 390
Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
D+ + G + + +++A+ + L+ P++T +
Sbjct: 391 YEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGE 450
Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
ASF G + T ++ +V + G+ L P + + L I+ EVS
Sbjct: 451 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 510
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR
Sbjct: 511 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 569
Query: 400 NSRFNREETEIFIAATPFLVK 420
++ E+ + + P +++
Sbjct: 570 STSSQVEKKNLMVFIKPTIIR 590
>gi|117922096|ref|YP_871288.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3]
gi|117614428|gb|ABK49882.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3]
Length = 561
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 23/297 (7%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L ++ ++ V + L + +N + QV L+ I EV
Sbjct: 241 TLSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEV 300
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
Q G Q G + G +S+ S+ GV F T++
Sbjct: 301 TLSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMIS 360
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
L+ + L+ P +TA + Q A G + T S +T +T
Sbjct: 361 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFF 420
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVEL 362
G+ L TP + G + L + V + + S +R++DT +
Sbjct: 421 SGIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRA 480
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
SG +V+ GL+K + ++ +PLL IP++G LF+N +++TE+ I P +V
Sbjct: 481 ASGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537
>gi|258625707|ref|ZP_05720586.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603]
gi|258581945|gb|EEW06815.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603]
Length = 571
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 59/309 (19%), Positives = 116/309 (37%), Gaps = 28/309 (9%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ ++ + G V + + T + ++++ L+I + QV
Sbjct: 263 KASDIAAMIGGEGNVNMLSERGTISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 321
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------------- 235
++ I V+ L ++G + + ++ S +
Sbjct: 322 QIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVN 381
Query: 236 ---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ F V + + L AL+ + ++ P L + Q A G +
Sbjct: 382 LASASANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 441
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350
Y SS+GAT+V+ + L TP + R+ L + + G+ S
Sbjct: 442 IPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 500
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++ T V + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+
Sbjct: 501 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 560
Query: 411 FIAATPFLV 419
I TP +V
Sbjct: 561 LIFVTPKVV 569
>gi|206891200|ref|YP_002248265.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206743138|gb|ACI22195.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 663
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 60/352 (17%), Positives = 122/352 (34%), Gaps = 36/352 (10%)
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADS-----NIRVEMVSDTVVLHGMVRTIQDSQR 159
+G + + I ++ LE + + I V + + G + +
Sbjct: 310 EGNIIRIAPVKIFQEEKKLEAETKDLFKKAEDEQIRIFVLKYASVDKVKGTIEAAKILSP 369
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQH 217
+S +++ + S + L+ Q+ L+ I E+ K +GF+
Sbjct: 370 KGTISTDERTRTVIIRDIPSVLGHIARLVADLDKPTRQILLEARIIEMSSSFSKSLGFEW 429
Query: 218 SITGSSSGPSKS-------------------------FAADFGGKFVSEGGDFSVKGVLD 252
I G + G S F++ +
Sbjct: 430 GIQWYPPGTRTTIVGSVGAAAGSSASSVPGGTAPLAINLPASTGNVTSPTTAFTIGYLNP 489
Query: 253 RFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ + + AL+++ + ++ P + + Q A G Y +G S
Sbjct: 490 SQTIALDLRISALQQSGKGKVISNPKVITLDNQKAKIVQGASIPYGEKDVQSGQISTKFK 549
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTI 368
D + + TP ++ + L + + V VN G + P + +T V L G T+
Sbjct: 550 DVAITVEATPHLIDDKSMLLDVSVIKEDLVEFVNIGGVYAPRTTKIEGNTKVSLKDGETL 609
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
V+ G+ K + +P L +P+LG LF++ + E+ I TP ++K
Sbjct: 610 VIGGIYKKTDSLTESKVPGLGDVPLLGELFKSRGRDETLYEVMIFVTPRILK 661
>gi|296314608|ref|ZP_06864549.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768]
gi|296838653|gb|EFH22591.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768]
Length = 505
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 53/260 (20%), Positives = 103/260 (39%), Gaps = 23/260 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
K+++ L++ QV ++ I E + +G + TG G + F
Sbjct: 239 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEG 297
Query: 233 D---------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ S+ + + L A E + +TLA P + + +
Sbjct: 298 GDGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 357
Query: 284 SASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
A SG + Y+ SSS ++S T + L TP + G+I + ++ PV
Sbjct: 358 EAKIESGTEIPYQDTSSSGSSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPVD 417
Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
V + + +T + +GGT+++ G+ +++ +PLL IP++G LF+
Sbjct: 418 CTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFKT 477
Query: 401 SRFNREETEIFIAATPFLVK 420
+ E+ I TP ++
Sbjct: 478 RGKSTNRRELLIFITPRIMD 497
>gi|296159579|ref|ZP_06842403.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1]
gi|295890287|gb|EFG70081.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1]
Length = 585
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/433 (17%), Positives = 144/433 (33%), Gaps = 43/433 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
P V P + + K +S+ + + V A
Sbjct: 162 GPPVPLPPLARLSGEPHGAADPSLAPDDKPLSLNFQRAELGAVLNAFSR-FTGLNIVASE 220
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ +G M + +++ IA L R+
Sbjct: 221 RVRGAVSLRLDKVPWRIAFDTLLDVNGLAMERHGNVIWVAPIADLAARERQRF------- 273
Query: 139 EMVSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--- 190
E + L + + ++ L +Q ++ +++ NLL +
Sbjct: 274 EAHARAADLEPLASRTFELHYAHAEDVRRLLTGSGAQRVLSKRGAATADPRTNLLFVTDL 333
Query: 191 ---------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
QV ++ I E + +G + S+ S++ + D
Sbjct: 334 EARLAQIAALLTSVDRPTRQVLIEARIVEGEHGFSRNLGVKLSMAASNADGTAKGLTDAA 393
Query: 236 --------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
F + ++ L ALE ++ P + A
Sbjct: 394 YDLSARPIAGFDAATAGLTLFAAGATRLLNIELSALEAQGRGEIVSSPRVVTADRMKAVV 453
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P ++ GR+ L + +V++ +G
Sbjct: 454 EQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDA 510
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ GGT+ + G+ D + +PLL KIP+LGALFR+
Sbjct: 511 GPAINTKHVQTRVEVEDGGTVSIGGIYATDDRDDVTQVPLLGKIPVLGALFRHRAHRDRR 570
Query: 408 TEIFIAATPFLVK 420
+E+ + TP +V+
Sbjct: 571 SELAVFITPRVVQ 583
>gi|288942699|ref|YP_003444939.1| general secretion pathway protein D [Allochromatium vinosum DSM
180]
gi|288898071|gb|ADC63907.1| general secretion pathway protein D [Allochromatium vinosum DSM
180]
Length = 733
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 62/298 (20%), Positives = 122/298 (40%), Gaps = 17/298 (5%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILK 211
+ +V + ++ S + + KK+++ L QV ++ TI E+
Sbjct: 429 ELEMSSSVNIVADAVNNSLLVRASPRDYKKILDALKQLDILPLQVLVEATIVEITLSGSL 488
Query: 212 QIGFQHSITGSSSGP------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ G Q + G + +F + F+ V + + + L AL
Sbjct: 489 KYGVQWELFGPGADGKSFASLDGTFDDAETSGIGTMFPGFNWAMVSNPDTIKATLSALAG 548
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGVVLHFT 319
+ L+ P++ + Q+A G + T +T+ ++ D GV+L
Sbjct: 549 DNLLNVLSSPSVMVMDNQTAKIQVGREVPIATSKQDGTSTTDRTYTTISYKDTGVILTVK 608
Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
P V G + L I+ EVS + + PS++ R ++V + S +VL GL++D
Sbjct: 609 PRVTPGGLVQLEIEQEVSTVFEENASGLNSPSFKKRTITSSVAVRSNQAVVLGGLIEDTR 668
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
K+GIP L +P++G LF + + TE+ + TP ++ +D+ + +
Sbjct: 669 SDGKQGIPGLYSLPVVGGLFGETSKSSTRTELVVVLTPKVI--ANDQDIESVTEDFRQ 724
>gi|218782642|ref|YP_002433960.1| type II and III secretion system protein [Desulfatibacillum
alkenivorans AK-01]
gi|218764026|gb|ACL06492.1| Type II and III secretion system protein [Desulfatibacillum
alkenivorans AK-01]
Length = 566
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 68/285 (23%), Positives = 116/285 (40%), Gaps = 44/285 (15%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------GSSSGP 226
++N L+ QV +K I E RD + +G Q G +SG
Sbjct: 268 LINKLD-RPPYQVHIKANIVETTRDTARDLGVQWGWMYGRYDSLGNDTDFWLTPGGNSGS 326
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSF------------------------ETVLHA 262
+ S A G + + G V G + +F E L A
Sbjct: 327 AASRDAPLTGGYTAGTGSKGVSGQGNGINFPVDFEDAMGATMGLMFGKVGSNILEVQLSA 386
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
L A I L+ P++T + Q+AS +G + Y + G V D ++L TP V
Sbjct: 387 LADAGKINILSTPSITTLDNQTASTENGTEVPYV-TINEDGDREVKFKDATLMLEITPHV 445
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ G++ +++ + E + N P ++ +T++ + +G T+V++GL K +
Sbjct: 446 IDEGQMKMKVSIKKDEVDLSRNVDGNPFILKKRTETSLIVRNGETVVISGLSKTRNTEGD 505
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
GIP L IP LG LF++ + E+ I TP ++ P +
Sbjct: 506 TGIPWLKDIPGLGYLFKSESKSEAMEEVLIFLTPTVL-PKPGEAM 549
>gi|332163311|ref|YP_004299888.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325667541|gb|ADZ44185.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330861918|emb|CBX72088.1| protein transport protein hofQ [Yersinia enterocolitica W22703]
Length = 439
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 74/402 (18%), Positives = 140/402 (34%), Gaps = 47/402 (11%)
Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL------IGHDGKQ 108
NK + L+ V++ AD + + ++G N+ L
Sbjct: 50 NKPVSLEFQDVPASVVLQ--ALADYQQLN----LVIASDIG-TNLSLRLVDVPWDQALAI 102
Query: 109 MLNLDILIERDIAHL------EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
+L + L + + + R + V + L ++ ++
Sbjct: 103 VLRMSHLKVEREGAVMLVFTEQDSEERRLRAEQKTVPESLSNLSLALQYANAEEVADSLN 162
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAE 204
L+E + + K N L I QV L I
Sbjct: 163 LAE----GGLLSPLGSVVVDKRTNTLLIRDTPASLALLKNWLAEMDLPLQQVQLAAHIVT 218
Query: 205 VRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
+ R+ L+++G + + + S +F + + F+V + R +
Sbjct: 219 MSRENLQELGVRWGMGDTKPTSSLRMSNFNVNLPLPNSAISAGFNVARIGGRLLELEL-S 277
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
ALE+ I +A P L Q+AS G Y GAT++ + + + TP
Sbjct: 278 ALEQENQIDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPK 337
Query: 322 VLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
+L G+I L ++ + P + + + ++ T + + G TIVL G+ +
Sbjct: 338 ILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSS 397
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+P+L+ IP LG LF+ + E+ I TP L+
Sbjct: 398 HGLNKVPILADIPWLGGLFKQDARQQSRRELVIFITPRLISA 439
>gi|255021644|ref|ZP_05293686.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus
ATCC 51756]
gi|254968904|gb|EET26424.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus
ATCC 51756]
Length = 772
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 54/292 (18%), Positives = 104/292 (35%), Gaps = 50/292 (17%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------------- 236
QV ++ I +V + + +G Q T +S+G G
Sbjct: 479 RPVPQVLIEARIVQVTTNAAQSLGIQWGGTYTSNGGGGVINLSGTGASQYTSSQGGSYPI 538
Query: 237 -----------------------------------KFVSEGGDFSVKGVLDRFSFETVLH 261
F++ L
Sbjct: 539 GATSGASGGTSTGSGIGVPAVVNLPAYAPAGSALTGLNPASLGFALGTAAGNRILNLQLQ 598
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
AL+ + + ++ P + + A G + Y+ +SS GATSV+ + L TP
Sbjct: 599 ALQASNQAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATSVSFKKAELSLDVTPH 657
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ G++ L + + ++P ++ T + + +G T+V+ G+ D
Sbjct: 658 IAPNGKVTLDVDAKNNQPNYAQTTPSGVPINTQEVKTKLLVNNGQTVVIGGIYTDSKSHY 717
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
G+P+L IP+LG LF++ +N ++E+ + TP +V + DL+ D
Sbjct: 718 DTGVPVLKDIPLLGWLFKSKTYNDSQSELLVFLTPKVVGGQSEDDLAGEDSG 769
>gi|88858853|ref|ZP_01133494.1| general (Type II) secretion pathway (GSP) D protein
[Pseudoalteromonas tunicata D2]
gi|88819079|gb|EAR28893.1| general (Type II) secretion pathway (GSP) D protein
[Pseudoalteromonas tunicata D2]
Length = 685
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 62/244 (25%), Positives = 106/244 (43%), Gaps = 15/244 (6%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
++ L+I Q+ L+V IAEV + G + + + G S A
Sbjct: 425 PLVKRLDI-LPKQIMLEVIIAEVSLTNEFKQGVEFAFKNGNYGTSTEKAF-------MGD 476
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
G + +L + +++ L+ + + L+ P+L G +A+ G ++S
Sbjct: 477 GFGGLSYLLQGTQGKLIVNLLQTNSLVNILSRPSLVVRDGVNATINVGTDIPIVGETASD 536
Query: 303 G------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-EPVIGVNAGDMPSYRVRK 355
T + GV L TPTV + G + + I+ ++S + G PS R
Sbjct: 537 PINGDRQTTKIEYRKTGVELAVTPTVNAQGIVLMEIKQKISNQVESGSTVSGNPSVFERT 596
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+T V SG TI+L GL+ ++ +P S IPILG LFR + ++TE+ I T
Sbjct: 597 INTEVVAESGQTIILGGLISENKSTKASRVPFFSGIPILGNLFRADTESGDKTELVILVT 656
Query: 416 PFLV 419
P ++
Sbjct: 657 PRVI 660
>gi|90413595|ref|ZP_01221585.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK]
gi|90325368|gb|EAS41857.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK]
Length = 565
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 54/260 (20%), Positives = 101/260 (38%), Gaps = 26/260 (10%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKF--- 238
+++ L+I + QV ++ I + + ++G + + + S ++ G
Sbjct: 306 IISALDIPVK-QVQIEARIVTINEGDVDELGVRWGVSKHNGNFTLGGSIESNLGSVGLLK 364
Query: 239 -----------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ + L AL+ + ++ P L +
Sbjct: 365 DDVSVDDFLNVNLAAQKAGASSIAFQIAKVGDILLDLELSALQSESKAEIISSPRLVTTN 424
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
Q+A G + Y SS+GA S+ + L TP + ++ L + EP
Sbjct: 425 KQTAYIEQGTEIPYLEA-SSSGAVSIDFKKAVLSLMVTPQITPDNKLVLDLVVTQDEPGK 483
Query: 342 G--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
G+ S ++ T V + +G TIVL G+ + + + +PLL +P LGALFR
Sbjct: 484 TVVTGIGEAVSINTQRIGTQVLVENGETIVLGGIYQHQMNKSVSKVPLLGDLPYLGALFR 543
Query: 400 NSRFNREETEIFIAATPFLV 419
+S + E+ I TP +V
Sbjct: 544 HSLEEMGKRELLIFITPKIV 563
>gi|254448307|ref|ZP_05061769.1| general secretion pathway protein D [gamma proteobacterium
HTCC5015]
gi|198262174|gb|EDY86457.1| general secretion pathway protein D [gamma proteobacterium
HTCC5015]
Length = 694
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 61/300 (20%), Positives = 110/300 (36%), Gaps = 31/300 (10%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
V + ++ T A + + V+ L+I QV ++ I EV
Sbjct: 314 TVSSDKEVD-IQADPGTNSLIITAAPDALRNIESVVRQLDIR-RAQVHVEAIIVEVSDTA 371
Query: 210 LKQIGFQHSITGSS---------------------SGPSKSFAADFGGKFVSEGGDFSVK 248
+++GF + + +G + + D G V G
Sbjct: 372 ARELGFSYLFANENGFDNETNPVGGALLGGGGDVINGIAAASTGDGSGASVPNGFTVGFG 431
Query: 249 GVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------ 301
+ + F +L A+ T L+ P++ + + A G + T S +
Sbjct: 432 DRDNSGNVFAGILRAVASDTEANLLSTPSIVTLDNEEAEIVVGQNVPFVTGSYTTASSGA 491
Query: 302 -TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+V D GV L TP + I L I+ E S V A R+ T+V
Sbjct: 492 NNPFQTVERQDVGVTLKITPQINEGDVIRLDIEQEASSVVESSVASGQLITNKREIKTSV 551
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G +VL GL+ D ++ +PLL IP+LG LF+ + ++ + + P +++
Sbjct: 552 MIEDGQMLVLGGLIDDQTRKSLFKVPLLGDIPLLGRLFQYRTNSNDKRNLMVFLHPKILR 611
>gi|162419434|ref|YP_001608044.1| putative outer membrane porin HofQ [Yersinia pestis Angola]
gi|165936209|ref|ZP_02224778.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
IP275]
gi|166213214|ref|ZP_02239249.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167399124|ref|ZP_02304648.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167418934|ref|ZP_02310687.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167425621|ref|ZP_02317374.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167470614|ref|ZP_02335318.1| protein transporter HofQ [Yersinia pestis FV-1]
gi|229836369|ref|ZP_04456536.1| predicted fimbrial transporter [Yersinia pestis Pestoides A]
gi|229840006|ref|ZP_04460165.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229842087|ref|ZP_04462242.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904612|ref|ZP_04519723.1| predicted fimbrial transporter [Yersinia pestis Nepal516]
gi|162352249|gb|ABX86197.1| protein transporter HofQ [Yersinia pestis Angola]
gi|165915823|gb|EDR34431.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
IP275]
gi|166205512|gb|EDR49992.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962928|gb|EDR58949.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167051628|gb|EDR63036.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167055311|gb|EDR65105.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229678730|gb|EEO74835.1| predicted fimbrial transporter [Yersinia pestis Nepal516]
gi|229690397|gb|EEO82451.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696372|gb|EEO86419.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229706437|gb|EEO92444.1| predicted fimbrial transporter [Yersinia pestis Pestoides A]
gi|320013284|gb|ADV96855.1| putative fimbrial transporter [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 500
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
P E A +++ + +++++ + + + + +V P +A ++
Sbjct: 113 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 168
Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
L + G ++ + ++ A +TL A++ + +
Sbjct: 169 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 224
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L G + + S A + + T L + A + + L + QV L I +
Sbjct: 225 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 280
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
+ L+++G + G G + DF SV + E L A
Sbjct: 281 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 339
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
LE+ + +A P L Q+AS G Y A ++ + + + TP +
Sbjct: 340 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 399
Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
L G+I L ++ + P I + +M ++ T V + G TIVL G+ + +Q
Sbjct: 400 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 459
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+PLL+ IP+LGA+FR + E+ I TP L+
Sbjct: 460 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 500
>gi|260773652|ref|ZP_05882568.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP
69.14]
gi|260612791|gb|EEX37994.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP
69.14]
Length = 536
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 65/311 (20%), Positives = 117/311 (37%), Gaps = 34/311 (10%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
++E ++ G +++ + +A ++ R ++ +++ ++ + QV
Sbjct: 208 QLESTIGRLIGSGSGQSVMVTPQASVITVRAYPDEIREV------RQFLDMSHLRIQRQV 261
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251
L+ I EV + Q G S T SS+G VS G L
Sbjct: 262 ILEAKILEVTLNDGFQQGINWSKTFSSNGNDYQLGQGVISNPVSSLPGMDAIGTLLGGQT 321
Query: 252 ----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305
SF+ VL + + L+ P +TA + Q A G Y T +S T
Sbjct: 322 NLVVKSGSFDAVLSFMSTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTDLTSEVGTGD 381
Query: 306 --------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------M 348
+T G+ L TP + G + L + V E + +
Sbjct: 382 NANVAPNIQLTPFFSGISLDVTPQIDDDGYVFLHVHPSVIEVEEQKKSVQFNDRIITLPL 441
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
+R++D+ + G +V+ GL+K + +P IP+LG LFR + ++T
Sbjct: 442 ARSSIRESDSVIRAQDGDVVVIGGLMKSNTMNQTSKVPFFGDIPLLGHLFRQTSNVTQKT 501
Query: 409 EIFIAATPFLV 419
E+ I P +V
Sbjct: 502 ELVILLKPTVV 512
>gi|224826467|ref|ZP_03699569.1| type II and III secretion system protein [Lutiella nitroferrum
2002]
gi|224601568|gb|EEG07749.1| type II and III secretion system protein [Lutiella nitroferrum
2002]
Length = 659
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 83/444 (18%), Positives = 153/444 (34%), Gaps = 72/444 (16%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV- 80
S P E A + I + I+ +K + + + V + T D +
Sbjct: 169 SALSRPITLEFRDAALKAVFEVISRTSGINFVFDKDVRPDLK---ATIFVRNSTIEDAIQ 225
Query: 81 -----------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
V + T+ ++ N + + ++ L + +R
Sbjct: 226 LLLVTNQLDRRVLNDNTIMVYPNNPAK-----QKDYQELVIKNFYLANAEAKDTANLIRA 280
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
+ ++ V+ + VV+ AV+++E ++ +
Sbjct: 281 LLKTRDVFVDDKRNLVVMRDTP-------EAVKVAERLIASQDLAEPEA----------- 322
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------SSGPSKSFAADFG 235
L V + EV R L+ +G + P+
Sbjct: 323 -------ILDVEVVEVNRARLQSLGIDWPSQVGYGLLTGGTSTQTGTVTNPTTGAVTPVV 375
Query: 236 GKFVSEGGDFSVKGVLDRF--------SFETVLHALERATAIRTLAEPTLTAISGQSASF 287
V+ V + + + VLH + T LA P + + + A
Sbjct: 376 TPGVAATVASGVINLRNNPLGLTTFIANPALVLHLQAQDTDANVLANPRIRVKNHEKAKI 435
Query: 288 TSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV- 343
G + V ++ A SV+ D GV L P++ + + + EVS V V
Sbjct: 436 HIGDKVPVFTSTAVVNAGIAQSVSYLDVGVKLEVKPSIGLDDDVTIDVGLEVSSIVKQVD 495
Query: 344 -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
R ADTT+ L G T VLAGL++D+ ++ IP L +PI+G LF ++
Sbjct: 496 FGTSTAYQIGSRAADTTLRLRDGETQVLAGLIQDEDRRSITKIPGLGDLPIVGRLFSSNN 555
Query: 403 FNREETEIFIAATPFLVKPVAMRD 426
+R ++EI + TP +V + + D
Sbjct: 556 DSRSKSEIVLLITPHIVHNLDLPD 579
>gi|313669028|ref|YP_004049312.1| pilus secretin [Neisseria lactamica ST-640]
gi|313006490|emb|CBN87953.1| pilus secretin [Neisseria lactamica 020-06]
Length = 726
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 54/261 (20%), Positives = 103/261 (39%), Gaps = 24/261 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------------S 222
K+++ L++ QV ++ I E + +G + TG
Sbjct: 459 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEG 517
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G S + S+ + + L A E + +TLA P + +
Sbjct: 518 GEGGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNR 577
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
+ A SG + ++ SSS G++S T + L TP + G+I + ++ PV
Sbjct: 578 KEAKIESGTEIPFQDTSSSGGSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPV 637
Query: 341 I-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
V + + +T + +GGT+++ G+ +++ IPLL IP++G LF+
Sbjct: 638 DCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKIPLLGDIPVIGNLFK 697
Query: 400 NSRFNREETEIFIAATPFLVK 420
+ E+ I TP ++
Sbjct: 698 TRGKSTNRRELLIFITPRIMD 718
>gi|209756638|gb|ACI76631.1| putative transport protein [Escherichia coli]
gi|320645172|gb|EFX14188.1| outer membrane porin HofQ [Escherichia coli O157:H- str. 493-89]
gi|320650483|gb|EFX18949.1| outer membrane porin HofQ [Escherichia coli O157:H- str. H 2687]
Length = 412
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 83/425 (19%), Positives = 153/425 (36%), Gaps = 29/425 (6%)
Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++ L P V P + + + + +K+++ + P
Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53
Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V + VV S L + G + + D + ++
Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ + NI ++ + + + T N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ ++ + +++ QV L I + L+++G + ++ + G
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224
Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
V G ++ L ALE+ + +A P L A Q AS G + Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLALELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
S +GATSV + + + TPTVL GRI L+ I V V+ G++ + +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ +
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404
Query: 415 TPFLV 419
TP LV
Sbjct: 405 TPRLV 409
>gi|300696689|ref|YP_003747350.1| secretion type II protein related to gspD (secretin) protein
[Ralstonia solanacearum CFBP2957]
gi|299073413|emb|CBJ52927.1| secretion type II protein related to gspD (secretin) protein
[Ralstonia solanacearum CFBP2957]
Length = 754
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 81/427 (18%), Positives = 155/427 (36%), Gaps = 55/427 (12%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
+ + + P E + A + + + ++ +K ++ V V + + T A
Sbjct: 176 ALSAAFRKPISLEFHDAQMRQVFEVLSRASGLNFVFDKD--VRTDQKV-TVFLRNSTVAS 232
Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
VV V + ++ + + +L D + T
Sbjct: 233 VVNTVLLTNQLEQRVLDGNAILIYPNTPAK-----QRDYQPLTVRTFVLSNSDAKDVANT 287
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L+ + +I V+ + +V+ I+ +++ V + E
Sbjct: 288 LKTILKTRDIVVDEKRNMIVMRDTPDAIEAAEKLVAVHEM-------------------- 327
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
E +V L+V I EV+R L+ +G Q S + + S +
Sbjct: 328 -----PEPEVMLEVEILEVKRSRLQDLGIQLPSQLSLTPLASSSGGTLTLDDLRHLNPTR 382
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
+ + + ++A LA P + + + A G + T +S+
Sbjct: 383 IGATVSPLNIN--VNAAVTD--TNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGFV 438
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360
A +V D G+ L PTV + +RI EVS+ V + R A T +
Sbjct: 439 AENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSIAYEIGTRNATTLL 498
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L G +LAGL++D+ + +P L IP LG LF N+ ++EI ++ TP +++
Sbjct: 499 RLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRVIR 558
Query: 421 PVAMRDL 427
P +L
Sbjct: 559 PAQRPNL 565
>gi|257485358|ref|ZP_05639399.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 341
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G +++ S R + + + L+ QV ++ I EV
Sbjct: 24 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 82
Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+G Q S T + + G + + + + L
Sbjct: 83 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 142
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
ALE + L+ P+L ++ Q A G S +T ++ V GV
Sbjct: 143 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 202
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
+L P + G + + IQ +VS +A P R T V SG T++L
Sbjct: 203 ILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSGQTVLLG 262
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ + +
Sbjct: 263 GLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQVT 320
Query: 432 DHYSV 436
D Y
Sbjct: 321 DDYRQ 325
>gi|85712729|ref|ZP_01043774.1| Type II secretory pathway, component PulD [Idiomarina baltica
OS145]
gi|85693461|gb|EAQ31414.1| Type II secretory pathway, component PulD [Idiomarina baltica
OS145]
Length = 695
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 70/445 (15%), Positives = 141/445 (31%), Gaps = 84/445 (18%)
Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG-------KNVGQANVILI-----GH 104
++Q+ V D ++ S R + G +++
Sbjct: 182 SRLVQIIERVDKAGDQDVDIVELQYASARELVGIAQNLFEKANADGTPALLIPKIVADER 241
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADS---------------------NIRVEMVSD 143
+++ + + L L + + N+ + ++
Sbjct: 242 SNSVIVSGEPRARSRVVKLIKQLDQDLKTEGNTRVYYLKYARAEEMVEVLQNVSQSIKAE 301
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKV 200
G + ++ +S + + + + V+ L+I QV ++
Sbjct: 302 EAKQTGQNSVRNRADNSISISAHESTNTVVITAEPDMLAALENVIRDLDIR-RAQVQVEA 360
Query: 201 TIAEVRRDILKQIGFQHSITGSS-------------------------SGPSKSFAADFG 235
I EV G Q G S + D G
Sbjct: 361 IIVEVLEGDNVDFGIQWISENGGLVQYNTGNQVPIGSLAAAAYQARPREGTSVTTVNDNG 420
Query: 236 GKFVSE---------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ G + + + V+ A+ + T LA P++ +
Sbjct: 421 QTVTTTNPEERGNLELLANLLGNVNGMMFGTIQNDWAAVVQAVSQDTNSNILATPSIVTV 480
Query: 281 SGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ ASF G + T + + +V + G+ L TP + + + I+ E
Sbjct: 481 DNEEASFLVGQEVPTITGSTLGNDNQSPFQTVDRQEIGIKLKVTPQINEGNAVQMVIEQE 540
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
VS + + R+ TTV G TIVL GL+ +D+Q+ IPLL IP +G
Sbjct: 541 VSSLSGATSVDVI--VNKRELKTTVMAEDGETIVLGGLIDEDVQESVSKIPLLGDIPFIG 598
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
LF ++ + ++ + + P +V+
Sbjct: 599 RLFSSTSTSTQKRNLMVFIRPTIVR 623
>gi|91791628|ref|YP_561279.1| type II and III secretion system protein [Shewanella denitrificans
OS217]
gi|91713630|gb|ABE53556.1| type II and III secretion system protein [Shewanella denitrificans
OS217]
Length = 683
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 26/283 (9%)
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ + + + + L+ + QV ++ + V+ D+ + +G + I
Sbjct: 398 SVAVDQRTNTLLVKDTADIIDNIHRLIEVLDIPIKQVLIESRMVTVKDDVSEDLGIRWGI 457
Query: 220 TGSSSGPSKSFAADFGGKFVSE---------------------GGDFSVKGVLDRFSFET 258
T S + + F V + D +
Sbjct: 458 TDQQGTKGTSGSLTGSQNIANGVVPSIDDRLNVNLPAAASNHTSIAFHVAKLADGTILDL 517
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
L ALE+ +A P +T S Q A++ G + S+S+GATSVT + L
Sbjct: 518 ELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGATSVTFKKAVLSLRV 576
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKD 376
TP + R+ L ++ V+ P+ ++ T V + +G TIVL G+ +
Sbjct: 577 TPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLVDNGETIVLGGIYQQ 636
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
++ +P+L IP +G LFRN+ E E+ I TP +V
Sbjct: 637 NLISRVSKVPILGDIPYVGFLFRNTTDKNERQELLIFVTPKIV 679
>gi|292489895|ref|YP_003532785.1| protein transport protein hofQ [Erwinia amylovora CFBP1430]
gi|291555332|emb|CBA23681.1| Protein transport protein hofQ precursor [Erwinia amylovora
CFBP1430]
gi|312174079|emb|CBX82332.1| Protein transport protein hofQ precursor [Erwinia amylovora ATCC
BAA-2158]
Length = 414
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 75/428 (17%), Positives = 160/428 (37%), Gaps = 31/428 (7%)
Query: 8 FFTMMSIFLFSSNP-SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
++ +++ +P + A+ P + A + + +++++ + + + + +
Sbjct: 1 MLRILCLWMALISPLAAAQPPLTLAFDNAPVAQVLQALADYQQLNLVVAPGVEGHLSLRL 60
Query: 67 QDV--LVSDPTKADVVVHS----PRTMYLFGK---NVGQANVILIGHDGKQMLNLDILIE 117
+DV + S + +F Q + + ++ML L I
Sbjct: 61 KDVPWRQALQLVIKTGKLSMEQQGNVLMVFPASWQQEEQRKAAVQREEQEKMLPLFDRIL 120
Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
+ ++ + R+ ++ L ++ L++T
Sbjct: 121 TLVHADAASVNTSLQSERARLMSARGSITLDSRTNSLLLRDTEKALAQT----------- 169
Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--- 234
+ + L++ +Q+ L I + + L+++G ++G + +
Sbjct: 170 ----EHWVRQLDVPL-EQIELAAQIVTMSEESLRELGVTWGMSGEAQVADALRTSQLRVD 224
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
G LD E L ALE +A P L Q+AS G +
Sbjct: 225 LASGRPAGVAGLTLAKLDGRLLELELSALESEHQADIIASPRLFTSHQQTASIKQGTEIP 284
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYR 352
Y+ + ++G+T++ + + + TP V S GRI L I V + ++ +
Sbjct: 285 YEVSTGNSGSTTMEFKEAMLAMEVTPLVQSNGRILLKLHISQNVPGRNMRSGENEVLTID 344
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
++ DT V L G T+ L G+ + +P L IP+LG+LFR+ ++ E+ I
Sbjct: 345 KQEIDTQVMLKDGQTLALGGIFQQQSATGSTRVPWLGDIPLLGSLFRHDVRQQKRRELVI 404
Query: 413 AATPFLVK 420
TP LV+
Sbjct: 405 FITPRLVR 412
>gi|208779792|ref|ZP_03247136.1| type IV pilus secretin PilQ family protein, putative [Francisella
novicida FTG]
gi|208744247|gb|EDZ90547.1| type IV pilus secretin PilQ family protein, putative [Francisella
novicida FTG]
Length = 596
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 72/422 (17%), Positives = 154/422 (36%), Gaps = 40/422 (9%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
P A + + + +++ ++ + + +D+++V P ++V+ S
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
L K + + + L++ +R + + + FI + +
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292
Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
+ +G + + + S A + T + K+V+N ++I DQV ++
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------EG 242
I EV R ++GF + + S + +
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPGPTPTPTPVDTFVGT 409
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ V + + ALE + +A P L + Q A F G+ + ++++
Sbjct: 410 TAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATAS 468
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKAD 357
GA +V + + L TP + G I + I + P + R+
Sbjct: 469 GAAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREIT 528
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T V G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP
Sbjct: 529 TKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPK 588
Query: 418 LV 419
++
Sbjct: 589 II 590
>gi|319424897|gb|ADV52971.1| MSHA system outer membrane secretin, MshL [Shewanella putrefaciens
200]
Length = 559
Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 61/297 (20%), Positives = 112/297 (37%), Gaps = 22/297 (7%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L ++ + ++ V + L + +N + QV L+ I EV
Sbjct: 240 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEV 299
Query: 206 RRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
Q G Q ++ + A G V+ + F T+++
Sbjct: 300 TLSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINL 359
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHDY 312
L+ + L+ P +TA + Q A G + T S +T +T
Sbjct: 360 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 419
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELP 363
G+ L TP + G + L + V + + + +R++DT +
Sbjct: 420 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAA 479
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
SG +V+ GL+K + ++ +PLL IP+LG LF+N +++TE+ I P +V
Sbjct: 480 SGDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVVD 536
>gi|332678440|gb|AEE87569.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida
Fx1]
Length = 596
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 72/422 (17%), Positives = 154/422 (36%), Gaps = 40/422 (9%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
P A + + + +++ ++ + + +D+++V P ++V+ S
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
L K + + + L++ +R + + + FI + +
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292
Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
+ +G + + + S A + T + K+V+N ++I DQV ++
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------EG 242
I EV R ++GF + + S + +
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPTPTPTPTPTPTPVDTFVGT 409
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ V + + ALE + +A P L + Q A F G+ + ++++
Sbjct: 410 TAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATAS 468
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKAD 357
GA +V + + L TP + G I + I + P + R+
Sbjct: 469 GAAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREIT 528
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T V G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP
Sbjct: 529 TKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPK 588
Query: 418 LV 419
++
Sbjct: 589 II 590
>gi|119776501|ref|YP_929241.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B]
gi|119769001|gb|ABM01572.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B]
Length = 685
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 60/318 (18%), Positives = 118/318 (37%), Gaps = 39/318 (12%)
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ + + +V + T+ A L ++
Sbjct: 381 ATDIAELLKSEGSSLLSDRGSVAVDERTNTLLVKDTAETLVNV---------------QR 425
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------------- 229
++ +L+I QV ++ + V+ ++ + +G + +T S
Sbjct: 426 MIEVLDIPIR-QVLIESRMVTVKDNVAEDLGIRWGVTDQQGTKGTSGSLEGAESIAGGVI 484
Query: 230 ------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ + F V + D + L ALE+ +A P +T S Q
Sbjct: 485 PAISDRLNVNLPAPTNAASIAFHVAKLADGTVLDMELSALEQENKGEIIASPRITT-SNQ 543
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
A++ G + +SS+G+T+V + L TP + R+ L ++ V
Sbjct: 544 KAAYIEQGVEIPYVSASSSGSTTVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRGETV 603
Query: 344 NAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ + ++ T V + +G TIVL G+ + ++ +P+L IP++G LFRN+
Sbjct: 604 DTATGRAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNT 663
Query: 402 RFNREETEIFIAATPFLV 419
E E+ I TP +V
Sbjct: 664 SDKNERQELLIFVTPKIV 681
>gi|260774710|ref|ZP_05883614.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC
BAA-450]
gi|260609366|gb|EEX35517.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC
BAA-450]
Length = 454
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 75/416 (18%), Positives = 152/416 (36%), Gaps = 33/416 (7%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
+ +I ++ ++ + + + V++ V P D+++ L
Sbjct: 46 FQDIPVRQVLQQIADYNDFNLVVSDAVSGNLTLRVKE--VPWPQLLDIILRMKG---LEK 100
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ G ++ + Q + E+ A L+ IA + ++ +
Sbjct: 101 RMDGSVLLVATAAEIAQFRQQKLEQEKVTAELQPLESEIIAMRFAKAADIAALLSDSAAT 160
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
R + + + T + K ++ L++ + QV ++ I + L+
Sbjct: 161 RMLSERGAISIDTRTNSLLIRDVAINIQAMKAIITALDVPVK-QVQIEARIVSLNEGDLQ 219
Query: 212 QIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEGGDFSV 247
++G + + ++ S + + F V
Sbjct: 220 ELGVRWGFSSTNGSHSVGGSIENNLANLNLYGDSDSSLDDFLNVNLAATSVNASTIAFQV 279
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
+ + L AL+R + ++ P L + Q A G + Y +SS GATSV
Sbjct: 280 AKLGSDTLLDLELSALQRESRAEVISSPRLITTNKQPAYIEQGTEIPYLEAASS-GATSV 338
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSG 365
+ L TP + S R+ L + P V+ G+ + ++ T V + +G
Sbjct: 339 NFKKAVLSLKVTPQITSDNRLILDLNVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNG 398
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
TIVL G+ + + + +PLL IP+LG LFR + ++E+ I TP +V P
Sbjct: 399 ETIVLGGIYQHSVSDTVDQVPLLGDIPLLGGLFRRTYQQMGKSELLIFVTPTVVAP 454
>gi|269959332|ref|ZP_06173715.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269835769|gb|EEZ89845.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 715
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 13/242 (5%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
++ L++ QV L++TIAEV + G + + + + S A G
Sbjct: 460 PLIAQLDV-MPKQVILEMTIAEVTMTDEFKFGVEWAFSNGNFSASTKDAFGL----DKVG 514
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
G F D F L A E + +++P+L G A+ G +++
Sbjct: 515 GGFIKWMSGDDF---INLQAFESNNNVNIMSKPSLLVRDGVEANINVGTDIPVVGQTTTD 571
Query: 303 GAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-EPVIGVNAGDMPSYRVRKAD 357
SV GV + TPT+ + G + + I E S + G + PS R
Sbjct: 572 SNNGVTRSVEYRKTGVKVAVTPTINAQGIVSMVISQENSNQVDGGTSVEGNPSIFDRSIT 631
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T V SG T++L GL+ +++ +P L +P++G LF N+ +TE+ I TP
Sbjct: 632 TEVVAESGQTVILGGLISENVTNNGSAVPFLGSLPVVGGLFGTKTDNKTKTELVIMVTPR 691
Query: 418 LV 419
+V
Sbjct: 692 IV 693
>gi|160873627|ref|YP_001552943.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
OS195]
gi|160859149|gb|ABX47683.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
OS195]
gi|315265856|gb|ADT92709.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
OS678]
Length = 559
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L ++ + ++ V + L + +N + QV L+ I EV
Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEV 298
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
Q G Q G + G +S+ ++ GV F T+++
Sbjct: 299 TLSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMIN 358
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
L+ + L+ P +TA + Q A G + T S +T +T
Sbjct: 359 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFF 418
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVEL 362
G+ L TP + S G + L + V + + + ++P + +R++DT +
Sbjct: 419 SGIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRA 478
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
SG +++ GL+K + ++ +PLL IP LG LF+N +++TE+ I P +V
Sbjct: 479 ASGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535
>gi|262273168|ref|ZP_06050984.1| type II secretory pathway component EpsD [Grimontia hollisae CIP
101886]
gi|262222746|gb|EEY74055.1| type II secretory pathway component EpsD [Grimontia hollisae CIP
101886]
Length = 671
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 52/291 (17%), Positives = 105/291 (36%), Gaps = 44/291 (15%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ + V+ L+I QV ++ I E+ +G Q +
Sbjct: 323 TAPPDILRALEGVIAQLDIR-RAQVLIEAMIVEMSESDGANLGIQWGSLDGGGIQFGNTG 381
Query: 232 ADFGGKFVSE-------------------------------------GGDFSVKGVLDRF 254
++ GG + +
Sbjct: 382 VPITNYLAAQEKAKDKTTTETRFDRDNIPVEVPITESGDPTAIAEVLGGVSGLAAGVVLG 441
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTT 309
+ ++ A+ + L+ P+L + + ASF G + T S++ +V
Sbjct: 442 DWTALVTAVSSNSDSNILSSPSLMVLDNEEASFIVGEEVPVVTGSTTGSNNDNPFQTVER 501
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
D GV L TP + + L I+ E+S + A D+ + R+ T+V IV
Sbjct: 502 KDVGVKLKITPQINEGDSVQLNIEQEISNVLGASGAVDI-RFGKRQLTTSVLAADQQMIV 560
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L+GL+ + + ++ +PLL IP+LG LF+++ + + + + P +++
Sbjct: 561 LSGLIDEQTNESEQKVPLLGDIPLLGHLFKSTSSGKTKRNLMLFIKPTIIR 611
>gi|30250239|ref|NP_842309.1| pilQ; fimbrial type-4 assembly signal peptide protein [Nitrosomonas
europaea ATCC 19718]
gi|30181034|emb|CAD86224.1| probable pilQ; fimbrial type-4 assembly signal peptide protein
[Nitrosomonas europaea ATCC 19718]
Length = 718
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 53/264 (20%), Positives = 104/264 (39%), Gaps = 39/264 (14%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKF 238
QV ++ I E + +G + + ++ + ++ G
Sbjct: 446 TQVRQVMIETRIVEATDTFSRNLGARFGVQNATRIGSETNGRRLGISGNLGNSSGLAGGT 505
Query: 239 VSEGGD-----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEP 275
VS G S+ + + L ALE + R +A P
Sbjct: 506 VSPSGGDNLNVNLPAAALAGVAGGPAALGLSLIKINNGTLINLELSALESDSKGRVIASP 565
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
L + AS G + ++T+S + + + L TP + I +++ +
Sbjct: 566 RLVTANRVEASIEQGTEIPFQTISVT--RPQIQFKKAVLGLKVTPQITPDDNIIMKL--Q 621
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
V++ G N P+ ++ T V + +GGT+V+ G+ + +Q + +PLL IP+LG
Sbjct: 622 VNQDTRGENTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEKQDRNQVPLLGDIPVLG 681
Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
LF+N+ ++ E+ I TP ++
Sbjct: 682 NLFKNTAKRDDKRELLIFVTPRIL 705
>gi|254490277|ref|ZP_05103466.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga
thiooxidans DMS010]
gi|224464410|gb|EEF80670.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga
thiooxydans DMS010]
Length = 672
Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 56/316 (17%), Positives = 117/316 (37%), Gaps = 55/316 (17%)
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
+I ++ ++++++ + D ++ ++ + +
Sbjct: 380 PRGSITIDDRTNSLLIRDTADNLVDIRQVIDELDKPV----------------------- 416
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--------------- 236
QV ++ I D K++G + + S+ + G
Sbjct: 417 --RQVLIESRIVIANNDFNKELGVRFGTSAQSNTLGAGSSGSLTGLSTNPNNDDQIRANS 474
Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
S ++ + E L A++ ++ P + + Q
Sbjct: 475 VVGNDLNVNLPVSNPSGSIGLALAKLPLGMILELELSAMQAEGKGEVISSPRVITSNQQQ 534
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
A+ G + Y+ +SS GAT+V+ + + L TP + RI + + EVS+ +G
Sbjct: 535 ATIEQGTEIPYQEATSS-GATNVSFKEAVLKLDVTPQITPDDRIVMDL--EVSKDEVGEV 591
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+PS R T V + +G T+VL G+ + E +P +P +G LF+N+
Sbjct: 592 FLGVPSIDTRSVKTQVLVDNGETVVLGGIYEQSTNDNVERVPFFGDLPYVGFLFKNTFKE 651
Query: 405 REETEIFIAATPFLVK 420
+ E+ + TP +VK
Sbjct: 652 DRKRELLVFVTPKIVK 667
>gi|329894543|ref|ZP_08270351.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
IMCC3088]
gi|328922981|gb|EGG30307.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
IMCC3088]
Length = 691
Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats.
Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 34/269 (12%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
+++L++I QV ++ I + ++ ++G +++ + + G
Sbjct: 419 NLIDLVDIPIR-QVMIEARIVIAQSNLDDELGISWGGGHTNNNFFGNALSISGDVENVTN 477
Query: 236 ----------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G F+V L ALE ++
Sbjct: 478 LNQSIIDGLPGSVSLPGSLLVDLGVAEPAGSFAVGFTSKDVFLTAELSALEAVGKGEVVS 537
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
+P + Q AS SG + Y+ S+ GAT+ + + L TP + RI L +
Sbjct: 538 QPKVITGDKQKASIKSGTEVPYQES-SAGGATATQFKEAVLQLDVTPNITPDDRILLDLV 596
Query: 334 TE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ + V N G +P+ + T V + +G TIVL G+ + + + +P+L
Sbjct: 597 INQDSIGDLVPSGNGGSIPTIDTTELTTQVLVGNGETIVLGGVFRTEDLEKVSKVPVLGD 656
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
IPI+G F++S +R +TE I TP ++
Sbjct: 657 IPIMGQFFKSSSTSRTKTETLIFITPRIL 685
>gi|239996578|ref|ZP_04717102.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
[Alteromonas macleodii ATCC 27126]
Length = 590
Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 24/269 (8%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--- 229
+ ++K +N L+I + QV ++ + V D+ +Q+G + + S
Sbjct: 320 DTLASIDEARKTINALDIPVK-QVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGVSGSL 378
Query: 230 -----------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
+ + F + ++D + L ALE +
Sbjct: 379 EGADTIAGGIVPSIDNRLNVNLPVTSAAGSIGFQIASLVDGTILDLELSALESENKGEII 438
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR- 331
A P +T + A G + Y +SS GATSV + L TP + RI L
Sbjct: 439 ASPRITVANQHEAYIEQGTEIPYVQATSS-GATSVEFKKAVLSLKVTPHITPDNRIILDL 497
Query: 332 -IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ + + + G+ + ++ T V + +G TIVL G+ + +PL
Sbjct: 498 VVTQDTRGETVSTSTGEAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGD 557
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
+P++GALFRNS +++ E+ I TP +V
Sbjct: 558 LPVVGALFRNSSQLQQKRELLIFVTPKIV 586
>gi|56708227|ref|YP_170123.1| Type IV pilin multimeric outer membrane protein [Francisella
tularensis subsp. tularensis SCHU S4]
gi|110670698|ref|YP_667255.1| Type IV pilin multimeric outer membrane protein [Francisella
tularensis subsp. tularensis FSC198]
gi|224457344|ref|ZP_03665817.1| Type IV pilin multimeric outer membrane protein [Francisella
tularensis subsp. tularensis MA00-2987]
gi|254370714|ref|ZP_04986719.1| type IV pilin multimeric outer membrane protein [Francisella
tularensis subsp. tularensis FSC033]
gi|254875049|ref|ZP_05247759.1| type IV pilus multimeric outer membrane protein [Francisella
tularensis subsp. tularensis MA00-2987]
gi|56604719|emb|CAG45789.1| Type IV pilin multimeric outer membrane protein [Francisella
tularensis subsp. tularensis SCHU S4]
gi|110321031|emb|CAL09172.1| Type IV pilin multimeric outer membrane protein [Francisella
tularensis subsp. tularensis FSC198]
gi|151568957|gb|EDN34611.1| type IV pilin multimeric outer membrane protein [Francisella
tularensis subsp. tularensis FSC033]
gi|254841048|gb|EET19484.1| type IV pilus multimeric outer membrane protein [Francisella
tularensis subsp. tularensis MA00-2987]
gi|282159452|gb|ADA78843.1| Type IV pilin multimeric outer membrane protein [Francisella
tularensis subsp. tularensis NE061598]
Length = 594
Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats.
Identities = 72/420 (17%), Positives = 153/420 (36%), Gaps = 38/420 (9%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
P A + + + +++ ++ + + +D+++V P ++V+ S
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVHGNISIDLKNV----PWNEVMNIVLVSK 235
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
L K + + + L++ +R + + + FI + +
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292
Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
+ +G + + + S A + T + K+V+N ++I DQV ++
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------------EGGD 244
I EV R ++GF + + S + +
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPGPTPTPVDTFVGTTA 409
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ E + ALE + +A P L + Q A F G+ + ++++GA
Sbjct: 410 KLAYTIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGA 468
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTT 359
+V + + L TP + G I + I + P + R+ T
Sbjct: 469 AAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTK 528
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++
Sbjct: 529 VMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 588
>gi|54307500|ref|YP_128520.1| putative fimbrial assembly protein [Photobacterium profundum SS9]
gi|46911920|emb|CAG18718.1| putative fimbrial assembly protein [Photobacterium profundum SS9]
Length = 567
Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats.
Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 26/260 (10%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKF--- 238
+++ L+I + QV ++ I + + ++G + + + S ++ G
Sbjct: 308 IISALDIPVK-QVQIEARIVTINEGDVDELGVRWGVSKHNGNFTLGGSIESNLGAVGLLK 366
Query: 239 -----------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ + L AL+ + ++ P L +
Sbjct: 367 DDVSVDDFLNVNLAAQKAGASSIAFQVAKIGDILLDLELSALQSESKAEIISSPRLVTTN 426
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
Q+A G + Y SS+GA SV + L TP + ++ L + EP
Sbjct: 427 KQTAYIEQGTEIPYLEA-SSSGAVSVAFKKAVLSLMVTPQITPDNKLVLDLVVTQDEPGK 485
Query: 342 G--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
G+ S ++ T V + +G TIVL G+ + + + +PLL +P LGALFR
Sbjct: 486 TVVTGIGEAVSINTQRIGTQVLVENGETIVLGGIYQHQVNKSVTKVPLLGDLPYLGALFR 545
Query: 400 NSRFNREETEIFIAATPFLV 419
+S + E+ I TP +V
Sbjct: 546 HSLEEMGKRELLIFITPKIV 565
>gi|152999034|ref|YP_001364715.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
OS185]
gi|151363652|gb|ABS06652.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
OS185]
Length = 559
Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats.
Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L ++ + ++ V + L + +N + QV L+ I EV
Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEV 298
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
Q G Q G + G +S+ ++ GV F T+++
Sbjct: 299 TLSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMIN 358
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
L+ + L+ P +TA + Q A G + T S +T +T
Sbjct: 359 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFF 418
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVEL 362
G+ L TP + S G + L + V + + + ++P + +R++DT +
Sbjct: 419 SGIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRA 478
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
SG +++ GL+K + ++ +PLL IP LG LF+N +++TE+ I P +V
Sbjct: 479 ASGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535
>gi|261250571|ref|ZP_05943146.1| type II secretory pathway component EpsD [Vibrio orientalis CIP
102891]
gi|260939140|gb|EEX95127.1| type II secretory pathway component EpsD [Vibrio orientalis CIP
102891]
Length = 654
Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats.
Identities = 53/293 (18%), Positives = 107/293 (36%), Gaps = 46/293 (15%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSS 224
++ + V+ L+I QV ++ I E+ +G Q I S++
Sbjct: 302 TAPPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAMIQYSNT 360
Query: 225 GPSKSFA--------------------------------ADFGGKFVSEGGDFSVKGVLD 252
G S D+ + G +
Sbjct: 361 GASVGQVMVGLEEAKDTTTTTAVYDSDGKFLRNETTTEEGDYSTLASALGSVNGAALSIA 420
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSV 307
+ ++ A+ + L+ P++T + ASF G + ++ +V
Sbjct: 421 MGDWTALISAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTSGSNNENPFQTV 480
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ G+ L P + + L I+ EVS + A D+ + R+ +T+V + G
Sbjct: 481 DRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVEDGQM 539
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IVL GL+ + + + +P+L IP LG LF+++ E+ + + P +++
Sbjct: 540 IVLGGLIDERALESESKVPILGDIPYLGHLFKSTSTQVEKKNLMVFIKPTIIR 592
>gi|302342781|ref|YP_003807310.1| general secretion pathway protein D [Desulfarculus baarsii DSM
2075]
gi|301639394|gb|ADK84716.1| general secretion pathway protein D [Desulfarculus baarsii DSM
2075]
Length = 746
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 14/245 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV ++V IAEV D ++G + + + G +
Sbjct: 472 PKQVLIEVVIAEVTLDDQLKLGVEWRYLTENGATFSDINLKPDADLLPTSGLVYTIAKTN 531
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------ 306
F L AL + ++ ++ P L A QSA G + T +++ S
Sbjct: 532 ELLFT--LKALAQKDKLQVISSPLLLAAENQSARILVGREIPIITDLTTSEDISTSTGNK 589
Query: 307 -----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTV 360
+ D G++L TP + G + L I+ EVS+ P++ R A T V
Sbjct: 590 VVDRSIEYRDVGIILTVTPRINDSGVVRLNIRQEVSDVLTDSFGDTGSPAFSQRTATTNV 649
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G +IVLAGL+++ ++ G+P LS +PILG LF+ + TE+ + TP ++
Sbjct: 650 VTTDGQSIVLAGLIQETKHKIDSGVPFLSDVPILGYLFKTEKDVDSRTELILTITPHVIH 709
Query: 421 PVAMR 425
+
Sbjct: 710 DMNDA 714
>gi|304411539|ref|ZP_07393152.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
OS183]
gi|307306685|ref|ZP_07586427.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
BA175]
gi|304350066|gb|EFM14471.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
OS183]
gi|306910653|gb|EFN41082.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
BA175]
Length = 559
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L ++ + ++ V + L + +N + QV L+ I EV
Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEV 298
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
Q G Q G + G +S+ ++ GV F T+++
Sbjct: 299 TLSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMIN 358
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
L+ + L+ P +TA + Q A G + T S +T +T
Sbjct: 359 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFF 418
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVEL 362
G+ L TP + S G + L + V + + + ++P + +R++DT +
Sbjct: 419 SGIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRA 478
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
SG +++ GL+K + ++ +PLL IP LG LF+N +++TE+ I P +V
Sbjct: 479 ASGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535
>gi|15597065|ref|NP_250559.1| secretion protein XqhA [Pseudomonas aeruginosa PAO1]
gi|218892174|ref|YP_002441041.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58]
gi|9947858|gb|AAG05257.1|AE004613_2 secretion protein XqhA [Pseudomonas aeruginosa PAO1]
gi|218772400|emb|CAW28182.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58]
Length = 776
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 96/508 (18%), Positives = 170/508 (33%), Gaps = 60/508 (11%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
Q+T + + P+ L + ANA +++ I + + I L++ +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRSNIERIEAIVRSLDRAGEHDYSI 206
Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
D++ V+ A+V+ S GK+ V+ + +L + L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262
Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
+L A+S + D L G + + ++
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLHGERGQDGRGSGKRGLLVRADE 322
Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
L+ + ++ L++ Q+ ++ I E+ +I +G Q ++
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381
Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
FA G L F ++ AL R + L+
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441
Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
P+L + Q A G ++T S SS T+V D GV L TP +
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501
Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ L I+ E+S R +TV G IVL GL++DD+Q+
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSR 561
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
+PLL IP +G LFR+SR R + + + P +V+ A +
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606
Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
R I + A+ + G I
Sbjct: 607 HGRYRSIQLLRGAAGEPARPLFEDAGAI 634
>gi|126176391|ref|YP_001052540.1| general secretion pathway protein D [Shewanella baltica OS155]
gi|125999596|gb|ABN63671.1| general secretion pathway protein D [Shewanella baltica OS155]
Length = 705
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 62/304 (20%), Positives = 108/304 (35%), Gaps = 46/304 (15%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ +ET + + V+N L+I QV ++ I EV G Q +
Sbjct: 315 IMAHAETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAS 373
Query: 220 TGSSSGPSKSFAADFGGKFV--------------------------------------SE 241
+ G +
Sbjct: 374 KAGGGTQFNNLGPTIGEVGAGVWAAQTEKASQTCTGSGDNKTCTDNPDKRGDVTLLAQAL 433
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YK 296
G + + F ++ A+ T LA P++T + Q ASF G +
Sbjct: 434 GKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTA 493
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
+ S+S +V + GV L P + + L I+ EVS S+ R+
Sbjct: 494 SSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRRL 551
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
TTV SG +VL GL+ +++Q+ + +P L IPI+G LF++S + + + I P
Sbjct: 552 TTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKP 611
Query: 417 FLVK 420
+++
Sbjct: 612 TIIR 615
>gi|330882201|gb|EGH16350.1| type III secretion component [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 216
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 81/235 (34%), Positives = 119/235 (50%), Gaps = 24/235 (10%)
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
S + + +L AL+ + LAEP +TA++GQ+ASF +GG+ + V +
Sbjct: 1 NGISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMTGQTASFLAGGE-VAVPVPVNR 59
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADT 358
+ YGV L F+PT+L GRI L+++ EVS + N +PS+RVR+ADT
Sbjct: 60 EVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGYQVPSFRVRRADT 119
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ SG T +AGL + + Q + +P+L +PILG LFR+ RF R ETE+ I TP+L
Sbjct: 120 RVEVGSGQTFAIAGLFQHESSQDMDKVPMLGDMPILGNLFRSKRFQRNETELVILITPYL 179
Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
V+PV R ++ P D + G GA GF
Sbjct: 180 VEPVKDRVVATPLDKQRAAS-------------------TASAGPRSGGAFGFYM 215
>gi|262401919|ref|ZP_06078484.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586]
gi|262351891|gb|EEZ01022.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586]
Length = 567
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 69/419 (16%), Positives = 138/419 (32%), Gaps = 43/419 (10%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
+ I ++ ++ ++ + V Q VL V R
Sbjct: 159 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 214
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+ G + +I + + R L I + + ++ +
Sbjct: 215 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 268
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + T + ++++ L+I + QV ++ I V+
Sbjct: 269 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 327
Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
L ++G + + ++ S +
Sbjct: 328 EGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVNLAAASTNASS 387
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F V + + L AL+ + ++ P L + Q A G + Y SSS
Sbjct: 388 IAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSG 447
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
+T + + L TP + R+ L + + G+ S ++ T V
Sbjct: 448 ASTV-SFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 506
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V
Sbjct: 507 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 565
>gi|113869481|ref|YP_727970.1| general secretion pathway protein D [Ralstonia eutropha H16]
gi|113528257|emb|CAJ94602.1| general secretion pathway protein D [Ralstonia eutropha H16]
Length = 812
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 64/313 (20%), Positives = 105/313 (33%), Gaps = 39/313 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------- 242
A QV ++ I EV ++G Q SS G + + A +
Sbjct: 434 ARRAQVYIESMIVEVTSTQASELGIQWQGLISSPGGNNNVFAGTNFGTGGQNILNLTLAG 493
Query: 243 ---------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
G ++ V +L AL ++ L+ P L +
Sbjct: 494 ALADSNRTAGIAAAQGLVQDIGGLNLGIVNKAMGLGALLRALGSNGSVNLLSTPNLITLE 553
Query: 282 GQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
+ A G T S + T + D G+ L P + G + ++I
Sbjct: 554 NEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIF 613
Query: 334 TEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
E S V N P+ VR +T V + G IVL GL++D + +PLL IP
Sbjct: 614 QESSNVVQATANLIQGPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDGVQKVPLLGDIP 673
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD-HYSVEDDAKAFFFNRVNKI 451
+G LFR NR +T + + P++++ D D Y N + +
Sbjct: 674 WIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAADRLTQDRYDYMRAQQQGFVSPNIMVRD 733
Query: 452 YGPKEASEVEGQN 464
+ +
Sbjct: 734 TNTPLLPPADAPS 746
>gi|254240262|ref|ZP_04933584.1| secretion protein XqhA [Pseudomonas aeruginosa 2192]
gi|126193640|gb|EAZ57703.1| secretion protein XqhA [Pseudomonas aeruginosa 2192]
Length = 776
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 96/508 (18%), Positives = 170/508 (33%), Gaps = 60/508 (11%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
Q+T + + P+ L + ANA +++ I + + I L++ +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRSNIERIEAIVRSLDRAGEHDYSI 206
Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
D++ V+ A+V+ S GK+ V+ + +L + L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262
Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
+L A+S + D L G + + ++
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLHGERGQDGRGSGKRGLLVRADE 322
Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
L+ + ++ L++ Q+ ++ I E+ +I +G Q ++
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381
Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
FA G L F ++ AL R + L+
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441
Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
P+L + Q A G ++T S SS T+V D GV L TP +
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501
Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ L I+ E+S R +TV G IVL GL++DD+Q+
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSR 561
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
+PLL IP +G LFR+SR R + + + P +V+ A +
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606
Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
R I + A+ + G I
Sbjct: 607 HGRYRSIQLLRGAAGEPARPLFEDAGAI 634
>gi|261211199|ref|ZP_05925488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341]
gi|260839700|gb|EEX66311.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341]
Length = 571
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 71/419 (16%), Positives = 143/419 (34%), Gaps = 43/419 (10%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
+ I ++ ++ ++ + V Q VL V R
Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+ G + +I + + R L I + + ++ +
Sbjct: 219 --VDGNVI----LIAPKDELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + T + ++++ L+I + QV ++ I V+
Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 331
Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
L ++G + + ++ S + +
Sbjct: 332 EGNLDELGVRWGVMSTNGSHSVGGSIESNLWQQGLLADDKFPVDQFLNVNLASTSANASS 391
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F V + + L AL+ + ++ P L + Q A G + Y SSS+
Sbjct: 392 IAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPY-LESSSS 450
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
GA++V+ + L TP + R+ L + + G+ S ++ T V
Sbjct: 451 GASTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V
Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569
>gi|257095715|ref|YP_003169356.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257048239|gb|ACV37427.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 703
Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats.
Identities = 51/272 (18%), Positives = 103/272 (37%), Gaps = 38/272 (13%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--HSITGSSSGPSKSFAADFGGKFVSE 241
++ +++A QV ++ I E K +G + + + + +
Sbjct: 427 IITKVDVAAR-QVMIEARIVEAGDSFAKNLGVRLGWNQRQGYQFGGQGASGTAMAGARAN 485
Query: 242 GGDFSVKGVLDRFSFET----------------------------------VLHALERAT 267
F V D +F T + ALE
Sbjct: 486 TPGFYTTQVRDIPNFNTDAFNVNLPATPRTGNAGLFSLVLYNSALTQFLNTEISALEADG 545
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
+ ++ P + + A G + Y+ +SS GATSV+ + L TP + G
Sbjct: 546 RGKVISSPRVMTANNIEALIEQGVEIPYQQATSS-GATSVSFKKAVLSLKVTPQITPDGN 604
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ ++++ P +N G + + T V + +GGT+V+ G+ +++ + IP
Sbjct: 605 VTMKVEVNKDTPNTRLNTGAGVAIDNKHVKTEVLVENGGTVVIGGIYTQEVRNNTQRIPF 664
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P +G LF++ + ++ E+ I TP +V
Sbjct: 665 FGDLPYIGWLFKSREWIDDKQELLIFITPRIV 696
>gi|325981841|ref|YP_004294243.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212]
gi|325531360|gb|ADZ26081.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212]
Length = 698
Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats.
Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 32/267 (11%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
K + L++ E QV ++ I E + + +G + I +S
Sbjct: 427 KRIQKLDV-FERQVMIEARIVEATDNFSRNLGARFGIQNASGLGDQTLGVSGNLTGSSAL 485
Query: 224 -SGPSKSFAADFGGKFVSEGGDFSVKG----------VLDRFSFETVLHALERATAIRTL 272
+G S A + + + G + + L ALE R +
Sbjct: 486 AAGGGVSGANNLNVNLPAAAATGLLGGPAALGLSLMKINNNRLINLELSALETDQKGRVI 545
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
A P + G A G + ++ +SS GATS+ D + L P + G+I + +
Sbjct: 546 ASPRVVTAHGVEAIIEQGDRIPFQQATSS-GATSIRFMDATLRLRVKPLITYNGQIDMEL 604
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+N P+ ++ T V + +GGT+V+ G+ ++ +P+L IP
Sbjct: 605 NVNQDRIGAIINQFLPPAINTKQVTTKVLVENGGTVVIGGIFDRTENRVVNKVPMLGDIP 664
Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
+LG +FRN+ + E+ I TP ++
Sbjct: 665 VLGHVFRNTTRVDNKRELLIFVTPRIL 691
>gi|254246562|ref|ZP_04939883.1| AscC [Burkholderia cenocepacia PC184]
gi|124871338|gb|EAY63054.1| AscC [Burkholderia cenocepacia PC184]
Length = 543
Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats.
Identities = 80/451 (17%), Positives = 150/451 (33%), Gaps = 43/451 (9%)
Query: 5 QRTFFTMMSIFLFSS-NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+ T + + P + PP + ++AA + ++IS+ L V +
Sbjct: 71 RTALPTETAAAAPTLEGPPIPLAPPARMSDAAA--RQPGDADDARRISLNLQGVGLAAAF 128
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL-DILIERDIAH 122
+ V T+ L +A L+ G M +++ A
Sbjct: 129 DAIAR-FTGLNIVVGEQVRGTVTLRLNNVRWREAFDTLLDTHGLAMSRRGNVIWVTPAAE 187
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGM-VRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
L R + + V +Q L Q ++ +++
Sbjct: 188 LAARERERF---EMHARAADLEPLASRTFVLHYPRAQDVQRLLAGATGQRLLSKRGAAAA 244
Query: 182 KKVMNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
NLL + QV ++ I E + + +G + ++
Sbjct: 245 DPRTNLLFVTDLAPRITQIAGLIDAIDRPSRQVRIEARIVEGEQGFSRNLGARVALRAQG 304
Query: 224 SGPSK-------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
PS AA G F + F++ + L ALE +
Sbjct: 305 RPPSAEGASFTANARNALDLAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQ 364
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
++ P + A G + Y+ G + V + L P + GR+ L
Sbjct: 365 IVSRPRVVTADRVKAIVEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVL 423
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ +V++ +G P+ + T VE+ +GGT+ + G+ + + +PLL K
Sbjct: 424 DL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGK 481
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKP 421
IP LGALFR+ + E+ + TP +V
Sbjct: 482 IPFLGALFRHRAQRDQRNELVVFITPTVVDA 512
>gi|183179752|ref|ZP_02957963.1| fimbrial assembly protein [Vibrio cholerae MZO-3]
gi|183013163|gb|EDT88463.1| fimbrial assembly protein [Vibrio cholerae MZO-3]
Length = 377
Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats.
Identities = 58/309 (18%), Positives = 116/309 (37%), Gaps = 28/309 (9%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ ++ + G V + + T + ++++ L+I + QV
Sbjct: 69 KASDIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 127
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232
++ I V+ L+++G + + ++ S +
Sbjct: 128 QIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVN 187
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ F V + + L AL+ + ++ P L + Q A G +
Sbjct: 188 LASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 247
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350
Y SS+GA++V + L TP + R+ L + + G+ S
Sbjct: 248 IPYLES-SSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 306
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++ T V + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+
Sbjct: 307 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 366
Query: 411 FIAATPFLV 419
I TP +V
Sbjct: 367 LIFVTPKVV 375
>gi|146291667|ref|YP_001182091.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens
CN-32]
gi|145563357|gb|ABP74292.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens
CN-32]
Length = 558
Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats.
Identities = 61/296 (20%), Positives = 112/296 (37%), Gaps = 22/296 (7%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L ++ + ++ V + L + +N + QV L+ I EV
Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEV 298
Query: 206 RRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
Q G Q ++ + A G V+ + F T+++
Sbjct: 299 TLSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINL 358
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHDY 312
L+ + L+ P +TA + Q A G + T S +T +T
Sbjct: 359 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 418
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELP 363
G+ L TP + G + L + V + + + +R++DT +
Sbjct: 419 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAA 478
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
SG +V+ GL+K + ++ +PLL IP+LG LF+N +++TE+ I P +V
Sbjct: 479 SGDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVV 534
>gi|9626321|ref|NP_040655.1| hypothetical protein Pf3_5 [Pseudomonas phage Pf3]
gi|138034|sp|P03668|VG430_BPPF3 RecName: Full=Putative assembly protein ORF430; Short=ORF430;
Flags: Precursor
gi|215375|gb|AAA88381.1| unknown protein [Pseudomonas phage Pf3]
gi|215384|gb|AAA88390.1| unknown protein [Pseudomonas phage Pf3]
Length = 430
Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats.
Identities = 62/270 (22%), Positives = 107/270 (39%), Gaps = 14/270 (5%)
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ + V+ +++ QV ++ + E D K++G S S A D V
Sbjct: 173 ALESVIQAIDVPVR-QVAIEANVVEASVDWSKRLGLNWGGALSLGNWSAVTAGDLS---V 228
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ G + + S + + A+E R ++ PTL + QSAS G + Y+
Sbjct: 229 AAGSSIGFGFLSNTLSLDGLFTAMENEGNGRVVSRPTLLTLDRQSASVLRGTELPYQQS- 287
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ GATSV + L P + I + + P +P + TT
Sbjct: 288 AGDGATSVAFKHAALSLEVKPVISPDNSIVIEVLVSRDSPNFSNAIDGVPPIDTNRLVTT 347
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +P G T+VL G+ QQ + +S+IP +G LF+ E+ E+ I TP ++
Sbjct: 348 IRVPHGQTVVLGGVYSTINQQGSSRVSGISRIPGIGRLFKKKEHVTEQYELLIFLTPRIL 407
Query: 420 K-PVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
V S D ++FF +
Sbjct: 408 GLEVEPEKQSLVFD--------ESFFLGDL 429
>gi|116048592|ref|YP_792609.1| putative type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|115583813|gb|ABJ09828.1| probable type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 803
Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats.
Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+V++LL+ QV ++ I EV D + G Q + G
Sbjct: 471 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 529
Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
G + G+ + + AL+ L+ P L + +SA
Sbjct: 530 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 589
Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
S G + + S+ ++ D G+ L+ P + G + L + EVS
Sbjct: 590 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 649
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ R DT++ L G +VL GLL+D++Q +G+P LS +P +G+L
Sbjct: 650 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 709
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425
FR + +R +T + + P++V+ A
Sbjct: 710 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 737
>gi|320352793|ref|YP_004194132.1| general secretion pathway protein D [Desulfobulbus propionicus DSM
2032]
gi|320121295|gb|ADW16841.1| general secretion pathway protein D [Desulfobulbus propionicus DSM
2032]
Length = 752
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 64/306 (20%), Positives = 112/306 (36%), Gaps = 29/306 (9%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSG------RNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
G + + + + + + + V+ L+I V L+ I
Sbjct: 320 GKASSAPSAPAISKEVKVVADKETNALIITGPREEYEVVEGVIKKLDIP-RRMVYLEALI 378
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF----VSEGGDFSVKGVLD------ 252
EV+ IG Q + S S A + G L
Sbjct: 379 MEVKVSKDFSIGVQWANADGSVVGGFSGNASSPYNMLKQMTTSPGSLPAGFTLGVLEEGI 438
Query: 253 ------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
+ V++A + + +A P + + AS G Y T ++T
Sbjct: 439 KIGDVVFPNLGAVVNAYKSDDDVNVIATPQILTTDNKKASIKVGENVPYITSKNTTDAEQ 498
Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
T+ D L TP V + L I EV + PS R A+TTV +
Sbjct: 499 DYTNYEYKDVATSLTITPQVNQAEVVRLEIGVEVIKLKNTEATDT-PSTFTRTAETTVVV 557
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-P 421
+ T+V+ G++ D + +P+L IP+LG +F++ ++E+T ++I TP +V+ P
Sbjct: 558 HNEQTVVIGGMIGQDTTSGEYKVPVLGDIPVLGWMFKSRSNSQEKTNLYIFITPHIVENP 617
Query: 422 VAMRDL 427
+ DL
Sbjct: 618 AEIADL 623
>gi|152998702|ref|YP_001364383.1| general secretion pathway protein D [Shewanella baltica OS185]
gi|151363320|gb|ABS06320.1| general secretion pathway protein D [Shewanella baltica OS185]
Length = 704
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 65/303 (21%), Positives = 110/303 (36%), Gaps = 45/303 (14%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ +ET + + V+N L+I QV ++ I EV G Q +
Sbjct: 315 IMAHTETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDSVGFGVQWAA 373
Query: 220 TGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRF------------ 254
+ G G F++ V G
Sbjct: 374 KAGGGTQFNNLGPTIGEIGAGVWQAQDKEGTFITNPSTGQVIGQNPSTKGDVTLLAQALG 433
Query: 255 ------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKT 297
F ++ A+ T LA P++T + Q ASF G + +
Sbjct: 434 KVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTAS 493
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
++S +V + GV L P + + L I+ EVS S+ R+
Sbjct: 494 SNNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRRLT 551
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TTV SG +VL GL+ +++Q+ + +P L IPILG LF++S + + + I P
Sbjct: 552 TTVMADSGQIVVLGGLINEEVQESVQKVPFLGDIPILGHLFKSSSSKKTKKNLMIFIKPT 611
Query: 418 LVK 420
+++
Sbjct: 612 IIR 614
>gi|254244921|ref|ZP_04938243.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192]
gi|126198299|gb|EAZ62362.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192]
Length = 803
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+V++LL+ QV ++ I EV D + G Q + G
Sbjct: 471 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 529
Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
G + G+ + + AL+ L+ P L + +SA
Sbjct: 530 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 589
Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
S G + + S+ ++ D G+ L+ P + G + L + EVS
Sbjct: 590 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 649
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ R DT++ L G +VL GLL+D++Q +G+P LS +P +G+L
Sbjct: 650 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 709
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425
FR + +R +T + + P++V+ A
Sbjct: 710 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 737
>gi|24375599|ref|NP_719642.1| MSHA biogenesis protein MshL [Shewanella oneidensis MR-1]
gi|24350494|gb|AAN57086.1|AE015842_6 MSHA biogenesis protein MshL [Shewanella oneidensis MR-1]
Length = 560
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 60/249 (24%), Positives = 103/249 (41%), Gaps = 23/249 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
QV L+ I EV Q G Q G + G +S+ S+ GV
Sbjct: 288 RQVILEAKILEVTLSDGYQQGIQWDNVLGHVGNTNINFGTSAGTGLSDKITSSLGGVTSL 347
Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------- 300
F T++ L+ + L+ P +TA + Q A G + T S
Sbjct: 348 SIKGSDFNTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTP 407
Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR 352
+T +T G+ L TP + G + L + V + + + ++P +
Sbjct: 408 VTTPQVELTPFFSGIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSNESLELPLAQ 467
Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R++DT + SG +V+ GL+K + ++ +PLL IP +G LF+N +++TE+
Sbjct: 468 SEIRESDTVIRAASGDVVVIGGLMKSENIEVVSQVPLLGDIPFVGELFKNRSKQKKKTEL 527
Query: 411 FIAATPFLV 419
I P +V
Sbjct: 528 IIMLKPTVV 536
>gi|171059772|ref|YP_001792121.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii
SP-6]
gi|170777217|gb|ACB35356.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii
SP-6]
Length = 577
Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats.
Identities = 60/324 (18%), Positives = 120/324 (37%), Gaps = 47/324 (14%)
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
+ ++ E QV L+ I EV Q G S G + G + S G ++ G ++
Sbjct: 245 VQVSIERQVMLEAKILEVELGSEAQSGINWSAFGRALGGALSIGLVQPGVTLAGSGALTL 304
Query: 248 KGV---------------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
G +F +L LE ++ L+ P + ++ Q A
Sbjct: 305 GGTSITPGGNLAASSSGAPFYGLAFQSANFAALLSFLESQGKVQVLSSPRIATLNNQKAV 364
Query: 287 FTSGGQHLYKTV-----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
G LY T S+ST + + G+ L TP + G++ L +
Sbjct: 365 LKVGSDELYVTGVSSTTTATGSTSTSTPSVVLQPFFSGIALDVTPQIDDQGQVMLHVHPA 424
Query: 336 VSEPVIGVNAGDMPSY----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+S ++ S V + D+ V + G + + GL+ + ++ + +
Sbjct: 425 ISTVSEKQKNINLGSLGSYQLPLASSTVNETDSIVRVRDGQIVAIGGLMSQEQREERSAV 484
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP-DDHYSVEDDAKAFF 444
P L +P++G LFR + + E+ I P +++ D P D + + +
Sbjct: 485 PGLGDVPLVGGLFRQTSTVMRKRELVILIKPTVIRA----DGPWPEADTHQPASQLQPWR 540
Query: 445 FNRVNKIYGPKEASEVEGQNYKGA 468
+ ++++ P+ A++
Sbjct: 541 PDAMSQLQLPQAATDSPSDAATAP 564
>gi|238796139|ref|ZP_04639650.1| General secretion pathway protein D [Yersinia mollaretii ATCC
43969]
gi|238720084|gb|EEQ11889.1| General secretion pathway protein D [Yersinia mollaretii ATCC
43969]
Length = 625
Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats.
Identities = 56/265 (21%), Positives = 100/265 (37%), Gaps = 9/265 (3%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGS 222
++T ++V+ L+I QV ++ I EV+ D +G Q S G
Sbjct: 302 AQTNALIINATPDLLRDLEQVITQLDIR-RAQVLVEAIIVEVQDDDNLSLGVQWSNQHGG 360
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
S + A+ S G + R ++ + AL LA P++ +
Sbjct: 361 GSNFPDTGASASNAIASSLKGVTGLATGFYRGNWSGLFTALRTNNQNDILATPSIVTLDN 420
Query: 283 QSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
A F+ G + + S +T +V G+ L P + + L I+ EVS
Sbjct: 421 MEAEFSVGQEVPVLSGSQTTTGDNIFRTVDRKSVGIKLKVKPQINKGDSVLLEIEQEVSS 480
Query: 339 PV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
++ R V + S +V+ GLL Q + +PLL IP +G
Sbjct: 481 VAAKAPSGTGDLGATFNSRTVKNAVMVGSNNIVVVGGLLDSTSQDITSKVPLLGDIPGVG 540
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
LFR++ + + + P +++
Sbjct: 541 FLFRSTTQKMVKRNLMLFIRPTIIR 565
>gi|120600401|ref|YP_964975.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1]
gi|120560494|gb|ABM26421.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1]
Length = 558
Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats.
Identities = 61/296 (20%), Positives = 112/296 (37%), Gaps = 22/296 (7%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L ++ + ++ V + L + +N + QV L+ I EV
Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEV 298
Query: 206 RRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
Q G Q ++ + A G V+ + F T+++
Sbjct: 299 TLSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINL 358
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHDY 312
L+ + L+ P +TA + Q A G + T S +T +T
Sbjct: 359 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 418
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELP 363
G+ L TP + G + L + V + + + +R++DT +
Sbjct: 419 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAA 478
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
SG +V+ GL+K + ++ +PLL IP+LG LF+N +++TE+ I P +V
Sbjct: 479 SGDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVV 534
>gi|237728710|ref|ZP_04559191.1| type II secretion system protein [Citrobacter sp. 30_2]
gi|226909332|gb|EEH95250.1| type II secretion system protein [Citrobacter sp. 30_2]
Length = 415
Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats.
Identities = 80/429 (18%), Positives = 159/429 (37%), Gaps = 34/429 (7%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++ + + + K N ++ + ++ K +++
Sbjct: 1 MKRWIAWIVIALAVGITSALATKPQNVTLVVDDVPVTQVLQALAEQEQKNLVVS------ 54
Query: 68 DVLVSDPTKADVVVHS------PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
P + V+ + + K+ G +++ +G + + + + A
Sbjct: 55 ------PDVSGVLSLHLTDVPWKQALQTVVKSAG----LVLRQEGNILHVHSVQWQSENA 104
Query: 122 H----LEMTLRRFIADSN--IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
+ ++ + I + + + + T N
Sbjct: 105 ARQDNEQTRIQASLPLEQRSIILHYADAAELAKAGEKLLSAKGSMTVDKRTNRLLLRDNS 164
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
A ++ +K ++ +++ QV L I + L+++G + S+ + +
Sbjct: 165 VALNTLEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWSLADAQQSGAVGNVTTLA 223
Query: 236 GKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
V G ++ E L ALE+ + +A P L A Q AS G +
Sbjct: 224 SDLSVATATSRVGFNIGRINGRLLELELSALEQKQQLDIIASPRLLASHLQPASIKQGSE 283
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPS 350
Y+ S +GATSV + + + TPTVL GRI L++ V V+ G++ +
Sbjct: 284 IPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLA 343
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++ +T VE+ SG TI L G+ + + +PLL IP LG+LFR+ E E+
Sbjct: 344 IDKQEIETQVEVKSGETIALGGIFSHKNKSAADSVPLLGDIPWLGSLFRHDGKEDERREL 403
Query: 411 FIAATPFLV 419
+ TP LV
Sbjct: 404 VVFITPRLV 412
>gi|296135153|ref|YP_003642395.1| type IV pilus secretin PilQ [Thiomonas intermedia K12]
gi|295795275|gb|ADG30065.1| type IV pilus secretin PilQ [Thiomonas intermedia K12]
Length = 752
Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats.
Identities = 67/360 (18%), Positives = 120/360 (33%), Gaps = 55/360 (15%)
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN- 174
+ A + L + V+L G+ + + R + T L+ N
Sbjct: 393 NYQKAATVVAMLTGAAGGAQSGTTATPSPVLLPGLSSSAAPTSRILSPRGTVLADPRTNQ 452
Query: 175 ---QYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSI---------- 219
S ++V L+ + QV ++ I E + +G +
Sbjct: 453 IFVTDIPSKLEEVAQLIAKIDKPVRQVMIEARIVEASDQFGRSLGVKLGFLDARGIQGGV 512
Query: 220 -----TGSSSG-------------------------------PSKSFAADFGGKFVSEGG 243
G + G P+ A
Sbjct: 513 PGTNLVGGTYGTVSGDYLGVANQTNQPGSSAATLADSQFVNLPAFGLAGSLLAGAAPSSL 572
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
S+ L A+E + ++ P + A+ G + Y+ +SS G
Sbjct: 573 GISLFNAAANRFINLELSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-G 631
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
AT+VT + L TP + G + + E+ + G + +PS T V++
Sbjct: 632 ATAVTFKKAVLSLDVTPQITPDGNVIM--NVEIHKDSPGASTAGVPSINTNTVTTQVQVE 689
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
+GGT+VL G+ Q + +PLL IP+LG LF+N+ + E+ + TP +V
Sbjct: 690 NGGTVVLGGIYTSQEQNQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFLTPKIVTNAD 749
>gi|187476847|ref|YP_784871.1| general secretion pathway protein D [Bordetella avium 197N]
gi|115421433|emb|CAJ47938.1| general secretion pathway protein D [Bordetella avium 197N]
Length = 860
Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats.
Identities = 69/308 (22%), Positives = 110/308 (35%), Gaps = 31/308 (10%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-------------AADFGGKF 238
QV ++ I EV D + G Q + + +
Sbjct: 413 RRAQVLVESMIVEVSEDKASEFGIQWMTGAGNINSNSTSFIGGTNLGGSGLGGVQGPTSL 472
Query: 239 VSEGGDFSVKGVLDRF--------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
G S+ V + + A+++ L+ P L + QSAS G
Sbjct: 473 DVLGKGLSLGVVKGTVDVLGNKVINLGVLARAMQKDGEANILSTPNLLTLDNQSASILVG 532
Query: 291 GQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
+ T SS ++ D G+ L+ P + G + L I EVS
Sbjct: 533 KTVPFVTGQYVTSGGNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQEVSSIDTS 592
Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ R DT+V + G IVL GLL+D + Q G+P LS IPILGALFR
Sbjct: 593 NSTAVSGVVTNKRAIDTSVLVEDGQIIVLGGLLEDSVSQGANGVPGLSSIPILGALFRYD 652
Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
+T + + P++V+ R S D Y +A + + + E+
Sbjct: 653 SRRHTKTNLMVFLRPYVVRD-NRRAASLTMDRYDYMRRQQAASQPEAHWLLPQVQTPELT 711
Query: 462 GQNYKGAI 469
+G++
Sbjct: 712 PPGSRGSV 719
>gi|84390819|ref|ZP_00991511.1| fimbrial assembly protein [Vibrio splendidus 12B01]
gi|84376622|gb|EAP93499.1| fimbrial assembly protein [Vibrio splendidus 12B01]
Length = 564
Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats.
Identities = 65/312 (20%), Positives = 120/312 (38%), Gaps = 31/312 (9%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ ++D + G V + D T + + + ++ L+I + QV
Sbjct: 253 KATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVK-QV 311
Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------------------------TGSSSGPSKSF 230
++ I V L ++G + + G +S
Sbjct: 312 QIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFL 371
Query: 231 AADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ G + F V + + L AL++ + ++ P L + + A
Sbjct: 372 NVNLGATSPNASSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQ 431
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
G + Y SS+GATSV + L TP + R+ L + P V+ G+
Sbjct: 432 GTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVVKTGTGE 490
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ ++ T V + +G T+VL G+ + + + +PLL +P+LGALFR S N +
Sbjct: 491 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGK 550
Query: 408 TEIFIAATPFLV 419
+E+ I TP +V
Sbjct: 551 SELLIFVTPKVV 562
>gi|148977866|ref|ZP_01814421.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3]
gi|145962935|gb|EDK28206.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3]
Length = 549
Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats.
Identities = 67/310 (21%), Positives = 114/310 (36%), Gaps = 34/310 (10%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
++E ++ G +++ + +A + F + + S++ + Q
Sbjct: 223 QLEAAVAHLIGSGNGQSVVVTPQASVITVRAFPDEIREVREFLGVSQQRLQR-------Q 275
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----V 250
V L+ I EV Q GF S S G S+ G
Sbjct: 276 VILEAKIMEVTLSDGYQQGFSWSNLSKSIGSGGVVIDRPASTLPPLDAISSLLGGQTNVT 335
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302
+ SFE VL ++ + L+ P +TA + Q A G Y T SS
Sbjct: 336 ISDGSFEAVLSFMDTQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSAVGSGDNAN 395
Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---------VIGVNAGDMPS- 350
+T G+ L TP + G + L + V E ++P
Sbjct: 396 VAPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEKEVKKLNLGSTTGVVELPLA 455
Query: 351 -YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+R++D+ + G +V+ GL+K + + +P L IP LG LFRN+ ++TE
Sbjct: 456 KSSIRESDSVIRARDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTE 515
Query: 410 IFIAATPFLV 419
+ I P +V
Sbjct: 516 LVILLKPTVV 525
>gi|332139923|ref|YP_004425661.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
[Alteromonas macleodii str. 'Deep ecotype']
gi|327549945|gb|AEA96663.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
[Alteromonas macleodii str. 'Deep ecotype']
Length = 547
Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats.
Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 24/266 (9%)
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------ 229
+ ++K +N L+I + QV ++ + V D+ +Q+G + + S
Sbjct: 280 ASIDEARKTINALDIPVK-QVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGISGSIEGA 338
Query: 230 --------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ + F + ++D + L ALE +A P
Sbjct: 339 DTIAGGVVPSIENRLNVNLPVSSAAGSIGFQIASLVDGTILDLELSALESENKGEIIASP 398
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQ 333
+T + A G + Y +SS GATSV + L TP + RI L +
Sbjct: 399 RITVANQHEAYIEQGTEIPYVQATSS-GATSVEFKKAVLSLKVTPHITPDNRIILDLVVT 457
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
+ + + GD + ++ T V + +G TIVL G+ + +PL +P+
Sbjct: 458 QDTRGETVTTSTGDAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGDLPL 517
Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
+GALFRNS +++ E+ I TP +V
Sbjct: 518 VGALFRNSSQLQQKRELLIFVTPKIV 543
>gi|261365347|ref|ZP_05978230.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996]
gi|288566287|gb|EFC87847.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996]
Length = 711
Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats.
Identities = 51/271 (18%), Positives = 108/271 (39%), Gaps = 30/271 (11%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSSSGP-------- 226
K++ L++ QV ++ I E + + +G + G+S
Sbjct: 440 KLIEELDVPTR-QVMVEARIVEAKDGFSRDLGVKFGVAGSKGRNAWGNSWSNAQDNHNTN 498
Query: 227 -----------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ S + + + ++ L + + A E +T++ P
Sbjct: 499 SAVLRGDANYPTWSLQPNISLPAAAATNNIALVRALSSGALGLEISASEATGKSKTISNP 558
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ + A+ SG + Y+ SS+GATSV+ + L TP V G++ + ++
Sbjct: 559 RVLTQDRREATIESGTEIPYQEA-SSSGATSVSFKKAVLGLTVTPNVTPDGQVIMTVKIT 617
Query: 336 VSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
P V++ + + +T + GGT+++ G+ ++D +PLL +P++
Sbjct: 618 KDTPQDCTVDSLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDNSDTINKVPLLGDLPVV 677
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR 425
G LF++ E E+ + TP ++ V
Sbjct: 678 GNLFKSRAKKEERRELLVFITPRIMDGVGSN 708
>gi|163751641|ref|ZP_02158861.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99]
gi|161328467|gb|EDP99622.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99]
Length = 681
Score = 173 bits (438), Expect = 7e-41, Method: Composition-based stats.
Identities = 60/280 (21%), Positives = 110/280 (39%), Gaps = 25/280 (8%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
+ + + + + + V L+ + QV ++ + V+ ++ + +G Q IT
Sbjct: 399 AVDDRTNTLLVRDTEETLENVHRLIEVLDIPIRQVLIEARMVTVKDNVSEALGIQWGITD 458
Query: 222 SSSGPSKS--------------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
S + S F V + D + L
Sbjct: 459 QQGDYGTSGSLRGAQSIANGIIPALADRLNVALPARAGSASIAFHVARLADGTILDMELS 518
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
ALE+ +A P + S Q A++ G + SSS+GAT+V+ + L TP
Sbjct: 519 ALEQENRGEIIASPRIVT-SNQKAAYIEQGVEIPYIESSSSGATTVSFKKAVLSLRVTPH 577
Query: 322 VLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
+ R+ L ++ V+ G+ S ++ T V + G TIVL G+ + ++
Sbjct: 578 ITPDNRVILDLEITQDSQGAVVATPMGEAVSIDTQRIGTQVLVNHGETIVLGGIYQQNLI 637
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P+L IP LG LFR++ + E E+ I T ++
Sbjct: 638 SRVTKVPILGDIPFLGFLFRSTSDSNERQELLIFITAKII 677
>gi|209520029|ref|ZP_03268806.1| type IV pilus secretin PilQ [Burkholderia sp. H160]
gi|209499514|gb|EDZ99592.1| type IV pilus secretin PilQ [Burkholderia sp. H160]
Length = 569
Score = 173 bits (438), Expect = 7e-41, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 97/242 (40%), Gaps = 15/242 (6%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKF 238
QV ++ I E + +G + S+ G+S+ + + F
Sbjct: 329 RPTRQVLIEAQIVEGDHGFSRNLGVRLSLAGTSADGTSKGLSGGADGTVYDLSARPISGF 388
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ ++ L ALE + ++ P + A G + Y+
Sbjct: 389 DAATAGLTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-A 447
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
G + V + L P ++ GR+ L + +V++ +G P+ + T
Sbjct: 448 KVGQGISGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGAQTDAGPAINTKHVQT 505
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ GGT+ + G+ + + E +P+L KIPILGALFR+ + +E+ + TP +
Sbjct: 506 RVEVEDGGTVSIGGIYETSDRDDVERVPILGKIPILGALFRDRTHSDTRSELAVFITPRV 565
Query: 419 VK 420
V+
Sbjct: 566 VR 567
>gi|295677888|ref|YP_003606412.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002]
gi|295437731|gb|ADG16901.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002]
Length = 572
Score = 173 bits (437), Expect = 7e-41, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 97/242 (40%), Gaps = 15/242 (6%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKF 238
QV ++ I E + + +G + S+ G+S+ + F
Sbjct: 332 RPTRQVLIEAQIVEGEQGFSRNLGVRLSLAGTSADGTSRGLTGGTDGTVYDLSARPISGF 391
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ ++ L ALE + ++ P + A G + Y+
Sbjct: 392 DAATAGLTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-A 450
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
G + V + L P ++ GR+ L + +V++ +G P+ + T
Sbjct: 451 KVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQT 508
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
VE+ GGT+ + G+ + D + E +P+L KIP+LGALFR+ +E+ + TP +
Sbjct: 509 RVEVEDGGTVSIGGIYETDDRDDVERVPVLGKIPVLGALFRHRTHRDTRSELAVFITPRV 568
Query: 419 VK 420
V+
Sbjct: 569 VR 570
>gi|261254112|ref|ZP_05946685.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP
102891]
gi|260937503|gb|EEX93492.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP
102891]
Length = 563
Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats.
Identities = 57/302 (18%), Positives = 114/302 (37%), Gaps = 21/302 (6%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ ++ + G + + T Q +++++ L+I + QV
Sbjct: 262 KASEIASMIGGEGAISMLSSRGALSVDERTNALLIRDLQPNIDVIQELISALDIPVK-QV 320
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFV 239
++ I V L ++G + ++ S +
Sbjct: 321 QIEARIVTVHEGNLDELGVRWGYHNTNGSTSLGSSIEDNVFGAVPIDDMLNVNLAATSVN 380
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ F V + + L AL+R + ++ P L + + A G + Y
Sbjct: 381 ASSIAFQVAKLGSDMLLDLELSALQRESKAEVISSPRLITTNKKPAYIEQGTEIPYLES- 439
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKAD 357
SS+GATSV + L P + R+ L + P + G+ + ++
Sbjct: 440 SSSGATSVAFKKAVLSLKVVPQITPDNRLVLDLSVTQDRPGDIVKTGTGEAVAINTQRIG 499
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T V + +G T+VL G+ + + + +P+L +P+LGALFR + ++E+ I TP
Sbjct: 500 TQVLVDNGETVVLGGIFQHSVTDAVDKVPMLGDLPLLGALFRRTYQKMGKSELLIFVTPK 559
Query: 418 LV 419
+V
Sbjct: 560 VV 561
>gi|15595882|ref|NP_249376.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
gi|218893357|ref|YP_002442226.1| putative type II secretion system protein [Pseudomonas aeruginosa
LESB58]
gi|9946565|gb|AAG04074.1|AE004503_12 probable type II secretion system protein [Pseudomonas aeruginosa
PAO1]
gi|218773585|emb|CAW29399.1| probable type II secretion system protein [Pseudomonas aeruginosa
LESB58]
Length = 803
Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats.
Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+V++LL+ QV ++ I EV D + G Q + G
Sbjct: 471 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 529
Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
G + G+ + + AL+ L+ P L + +SA
Sbjct: 530 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 589
Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
S G + + S+ ++ D G+ L+ P + G + L + EVS
Sbjct: 590 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 649
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ R DT++ L G +VL GLL+D++Q +G+P LS +P +G+L
Sbjct: 650 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 709
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425
FR + +R +T + + P++V+ A
Sbjct: 710 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 737
>gi|307132897|ref|YP_003884913.1| putative fimbrial transporter [Dickeya dadantii 3937]
gi|306530426|gb|ADN00357.1| predicted fimbrial transporter [Dickeya dadantii 3937]
Length = 417
Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats.
Identities = 76/430 (17%), Positives = 145/430 (33%), Gaps = 31/430 (7%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
MM +F + P + + + +++++ + + V
Sbjct: 1 MMLLFSCMLVEARGDEPVSLAFDDVPVQRVLQALADHQQLNLVVAPGVTGNVS------- 53
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ-MLNLDILIERDIAHLEMTLRR 129
++ + +GQ + +R L R+
Sbjct: 54 ------LNLQQVPWQQALDIILRMGQLTIERQDSVMMVYPDTYMKDRQRQQEELAAKQRQ 107
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
+ N+ V + V T SQR L+E + V L
Sbjct: 108 QLPLQNLSVTL---QYAEAADVATSLQSQRGTLLTERGSVTVDKRTNTLLVRDVVSALEQ 164
Query: 190 IAG--------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
I QV L I + + LK +G + +++ +F E
Sbjct: 165 IRPWLGELDKPLAQVQLAAHIVTISSEHLKALGVNWGLGDATTTGQALQMNNFSVSLPVE 224
Query: 242 GGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ L+ + L ALE+ + +A P L Q+AS G + Y+
Sbjct: 225 SPAVNAGFHLAKLNGRLLDLELMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVS 284
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRK 355
S ++G+TS+ + + + TP +L G+I L + + P + ++ + ++
Sbjct: 285 SGASGSTSIEFKEAVLGMEVTPRILHGGQITLNLLISQNMPGRAIKQGEGSEILAIDKQE 344
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T V + G TIVL G+ + Q + +P LS +P +G FR+ E+ I T
Sbjct: 345 IQTQVTVLDGETIVLGGIFQQQKNQGERQVPGLSALPGIGQWFRSGNQQHTRRELVIFIT 404
Query: 416 PFLVKPVAMR 425
P L++
Sbjct: 405 PTLIQSARRA 414
>gi|170731725|ref|YP_001763672.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3]
gi|169814967|gb|ACA89550.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3]
Length = 543
Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats.
Identities = 73/459 (15%), Positives = 146/459 (31%), Gaps = 57/459 (12%)
Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
R + ++ P++ P A + + + G + + + +
Sbjct: 68 RAARAALQTESTAAAPTLEGPPIPLAPPARMSDAMARQPGDA-------DDARRISLNLQ 120
Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAH-- 122
+ + A + + G+ V G + L ++ + +
Sbjct: 121 GVGLAAAFDAIARFTGLN----IVVGEQVRGTVTLRLNNVRWREAFDTLLDTHGLAMSRR 176
Query: 123 ----LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI-----QDSQRAVELSETFLSQSGR 173
A R EM + L + +Q L Q
Sbjct: 177 GNVIWVTPAAELAARERERFEMHARAADLEPLASRTFVLHYPRAQDVQRLLAGATGQRLL 236
Query: 174 NQYANSSSKKVMNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGF 215
++ +++ NLL + QV ++ I E + + +G
Sbjct: 237 SKRGAAAADPRTNLLFVTDLAPRITQIAGLIEAIDRPSRQVRIEARIVEGEQGFSRNLGA 296
Query: 216 QHSITGSSSGPSK-------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
+ ++ PS AA F + F++ + L A
Sbjct: 297 RVALRAQGRPPSAEGTSFTADARNALDLAARPLSGFDAATAGFTLFAAPLSRVLDIELSA 356
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
LE + ++ P + A G + Y+ G + V + L P +
Sbjct: 357 LEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQI 415
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
GR+ L + +V++ +G P+ + T VE+ +GGT+ + G+ + +
Sbjct: 416 TPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDV 473
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+PLL KIP LGALFR+ + E+ + TP +V
Sbjct: 474 TRVPLLGKIPFLGALFRHRAQRDQRNELVVFITPTVVDA 512
>gi|254253479|ref|ZP_04946797.1| Type II secretory pathway component HofQ [Burkholderia dolosa
AUO158]
gi|124896088|gb|EAY69968.1| Type II secretory pathway component HofQ [Burkholderia dolosa
AUO158]
Length = 549
Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats.
Identities = 60/308 (19%), Positives = 109/308 (35%), Gaps = 34/308 (11%)
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVT 197
+Q L Q ++ +++ NLL + QV
Sbjct: 225 RAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRIAQIASLIDAIDKPSRQVR 284
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGD 244
++ I E + + +G + ++ P AA G F +
Sbjct: 285 IEARIVEGEQGFSRNLGARLALHAQGRPPPGDGAAPATDTRNALDLAARPLGGFDAATAG 344
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ + L ALE + ++ P + A G + Y+ G
Sbjct: 345 LTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ-AKVGNGV 403
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P GR+ L + +V++ +G P+ + T VE+
Sbjct: 404 SGVQFRRATLKLEVEPQSTPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVED 461
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V
Sbjct: 462 GGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHQARRDQRSELVVFITPTVVGARCE 521
Query: 425 RDLSRPDD 432
SR D
Sbjct: 522 TAGSRDAD 529
>gi|74317457|ref|YP_315197.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
25259]
gi|74056952|gb|AAZ97392.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
25259]
Length = 656
Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats.
Identities = 88/470 (18%), Positives = 155/470 (32%), Gaps = 68/470 (14%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVLVSDPTK---- 76
P E A + I + ++ +K + L D
Sbjct: 177 PAFHKPITLEFRDAPLRNVFDMIARQSGLNFVFDKDVRLDTKATLFARNTPIDEAVDMLL 236
Query: 77 ----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
V + T+ ++ + M+ L D LR +
Sbjct: 237 MTGQLSKKVVNANTLLIYPDQP-----QKQKAYQELMVKSFYLGNADAKATMAMLRTLVK 291
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
++ V+ + +V+ A+ L+E ++
Sbjct: 292 AKDLHVDERLNLLVMRDTP-------DAIRLAERIVAVQDL------------------A 326
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDFSVKGV 250
E +V L+V + EV+R L +G Q+ S P+ S GG + SV V
Sbjct: 327 EPEVMLEVEVLEVKRGRLLDLGIQYPTNFSLLNLPPATSSTIGPGGVVTNTTPPPSVLTV 386
Query: 251 LDRFSFETV---------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ + ++ + + LA P + + + A G + T +++
Sbjct: 387 ESLKNITASQIAISPTPGVDLRKQDSDVNILANPRIRVKNREKAKIHIGDKVPVITSNTT 446
Query: 302 TG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRK 355
+ + SV+ D G+ L P+VL + +R+ EVS V N R
Sbjct: 447 STGVVSESVSYLDVGLKLDVEPSVLMREDVQIRVGLEVSNIVREIRSGNGTLTYQIGTRN 506
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
A TT+ L G T VLAGL+ D+ + IP L +P++G LF + R R +TEI + T
Sbjct: 507 AGTTLRLKDGETQVLAGLISDEDRSTASRIPGLGDLPLIGRLFSSQRDERNKTEIVLLIT 566
Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
P +++ D + + F G A
Sbjct: 567 PRVLR----------SDATRLPALTE--FRGGTENAIGGGGAVPFSAPAL 604
>gi|330810080|ref|YP_004354542.1| type II secretion pathway protein D precursor [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327378188|gb|AEA69538.1| putative type II secretion pathway protein D precursor [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 786
Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats.
Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 28/269 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+V++LL+ QV ++ I EV D + G Q G+ G + GG ++
Sbjct: 454 EVIDLLDQR-RAQVVIESLIVEVGEDDASEFGVQWQT-GNLGGSGVIGGVNLGGTGLNLN 511
Query: 243 GDFSVK------------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
G S+ G+ + + AL+ L+ P L + ++
Sbjct: 512 GKTSIDVLPQGLNLGVVNGTVDIPGIGKILDLKVLARALKSKGGTNVLSTPNLLTLDNEA 571
Query: 285 ASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
AS G + + +S+ +VT + G+ L+ P + G + L I EV
Sbjct: 572 ASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQEV 631
Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
S ++ R DT++ L G +VL GLL+D Q + +P LS IP +GA
Sbjct: 632 SSVDNRASSTTGIVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSTIPGIGA 691
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMR 425
LFRN R +T + + P++++ A
Sbjct: 692 LFRNERRQITKTNLMVFLRPYIIRDTAAG 720
>gi|91776764|ref|YP_546520.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
gi|91710751|gb|ABE50679.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
Length = 657
Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats.
Identities = 83/461 (18%), Positives = 156/461 (33%), Gaps = 74/461 (16%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV----SDPTKA 77
P E A I + + + I+ L+K I P V + D
Sbjct: 177 PAFNKPVSLELRDANIKMVFEALSRATGINFILDKDIK---PETKATVFIKKSPVDEAIE 233
Query: 78 DV--------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
V V S T +F + + ++ L + ++
Sbjct: 234 MVLATNGLQKKVLSENTALVFPNTAAK-----LKDYQDLVIRNFYLTNAKAKDVSTMIKT 288
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
+ ++ + + +V+ V ++E ++ +
Sbjct: 289 MLKTKDVHTDERLNMIVIRDTP-------EVVRIAEKLVAANDL---------------- 325
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
+ +V L++ + EV R+ L+++G + S A G + + S
Sbjct: 326 --ADPEVMLEIEVMEVSRERLQELGIDYP---------TSLTASAGLSIDAMRSNNSGTY 374
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATS 306
+ + L+ + I LA P + + A G + T ++ G + S
Sbjct: 375 LFNS---NPTLNFRKTTGDINILANPRIRVRNNDKAQVLVGDKVPVITTVATAGVGSSQS 431
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELP 363
V D G+ L P + + ++I EVS G + R A T + L
Sbjct: 432 VQYLDVGLKLEAEPRITLDDFVNIKIALEVSSLGSSTTLNGGGVVYQIGTRNASTLLRLK 491
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
G T +LAGL+ D+ ++ +P L IP+LG LF N NR++TEI +A TP +V ++
Sbjct: 492 DGETQILAGLINDEERRNTSRLPGLGDIPLLGRLFSNQTDNRKKTEIVLAITPHVVNNIS 551
Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
E + ++ N I + +
Sbjct: 552 -----------RPESEVLEYWSGTENGISDHPQINVPGTGA 581
>gi|186897240|ref|YP_001874352.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis
PB1/+]
gi|186700266|gb|ACC90895.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis PB1/+]
Length = 500
Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats.
Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
P E A +++ + +++++ + + + + +V P +A ++
Sbjct: 113 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 168
Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
L + G ++ + ++ A +TL A++ + +
Sbjct: 169 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 224
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L G + + S A + + T L + A + + L + QV L I +
Sbjct: 225 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 280
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
+ L+++G + G G + DF SV + E L A
Sbjct: 281 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 339
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
LE+ + +A P L Q+AS G Y A ++ + + + TP +
Sbjct: 340 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 399
Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
L G+I L ++ + P I + +M ++ T V + G TIVL G+ + +Q
Sbjct: 400 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 459
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+PLL+ IP+LGA+FR + E+ I TP L+
Sbjct: 460 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 500
>gi|222111308|ref|YP_002553572.1| type II and iii secretion system protein [Acidovorax ebreus TPSY]
gi|221730752|gb|ACM33572.1| type II and III secretion system protein [Acidovorax ebreus TPSY]
Length = 356
Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats.
Identities = 88/342 (25%), Positives = 142/342 (41%), Gaps = 20/342 (5%)
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
+G Q+ + A M LR+ ++ D I V V D VVL GM + + +
Sbjct: 5 RNGTQINYEVTVSADHHAKTAMELRQLLSHDKGINVSAVGDKVVLDGMYANQDSAAKIQK 64
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
+ + + + + E V L V + EVR+ L IG + S G
Sbjct: 65 IVKAYPQVLNLVRERPEDQ-------LVVPEQMVQLDVKVVEVRKQALDNIGVKWSNLGV 117
Query: 223 SSGPSKSFAADFGGKF-----------VSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
+ + + ++ + + +VL+ LE T
Sbjct: 118 AGPTFATSGYFYANSANFRGLNQEGYPITTPARPFISYLGLATQITSVLNFLESNGDSWT 177
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LAEP ++++SG S+ GG+ VSS G SV YGV+L F P + G +
Sbjct: 178 LAEPRISSVSGGSSKVQVGGEIPIP-VSSGFGQLSVVYKPYGVILEFKPVIDKAGNVRSS 236
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
I EVS+P G ++ + +T V L T+V++GLLK + KEGIP++ +
Sbjct: 237 IVAEVSQPDRSAGQGQFVAFTTNRTETEVSLKQNETLVISGLLKSVGARNKEGIPVIGRA 296
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
P+LG LF E+TE+ + TP + P A R ++
Sbjct: 297 PVLGRLFSTQEMTNEQTEMLVVVTPRIHTPAADRAQVLASEN 338
>gi|160873279|ref|YP_001552595.1| general secretion pathway protein D [Shewanella baltica OS195]
gi|160858801|gb|ABX47335.1| general secretion pathway protein D [Shewanella baltica OS195]
gi|315265506|gb|ADT92359.1| general secretion pathway protein D [Shewanella baltica OS678]
Length = 705
Score = 173 bits (437), Expect = 9e-41, Method: Composition-based stats.
Identities = 62/304 (20%), Positives = 108/304 (35%), Gaps = 46/304 (15%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ +ET + + V+N L+I QV ++ I EV G Q +
Sbjct: 315 IMAHAETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAS 373
Query: 220 TGSSSGPSKSFAADFG--------------------------------------GKFVSE 241
+ G +
Sbjct: 374 KSGLGTQFNNLGPTIGEIGAGIWQAQDVKASQTCTGSGDNQTCTDNPDTKGDVTLLAQAL 433
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YK 296
G + + F ++ A+ T LA P++T + Q ASF G +
Sbjct: 434 GKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTA 493
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
+ S+S +V + GV L P + + L I+ EVS S+ R+
Sbjct: 494 SSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRRL 551
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
TTV SG +VL GL+ +++Q+ + +P L IPI+G LF++S + + + I P
Sbjct: 552 TTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKP 611
Query: 417 FLVK 420
+++
Sbjct: 612 TIIR 615
>gi|254487874|ref|ZP_05101079.1| general secretion pathway protein D [Roseobacter sp. GAI101]
gi|214044743|gb|EEB85381.1| general secretion pathway protein D [Roseobacter sp. GAI101]
Length = 644
Score = 173 bits (437), Expect = 9e-41, Method: Composition-based stats.
Identities = 76/414 (18%), Positives = 149/414 (35%), Gaps = 33/414 (7%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
+ I E + + + + + + + + + P A
Sbjct: 200 AGTVATAISEVLGPAGTGARLSVDVSSNVLLVRGTQRDISQIRSLARAMDTSPRVAQSET 259
Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
S ++ G+A ++ + D+ + +L A+ + +
Sbjct: 260 VSTS---IYRLQFGEATIVADLVRNTLTGSTDL-----TNPVAASLGEDPANPDAQSFG- 310
Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
G ET Q + +++ L++ QV ++
Sbjct: 311 ------SGPDAAPISPVSVQASIETNSVIVRGTQRQLAEVSQLIKALDVRRP-QVMIEAA 363
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------------SEGGDFSVKG 249
I EV D+ +++G Q I ++ S + + G + +
Sbjct: 364 IVEVSGDVAERLGVQLGIGENTETGSIAATSFGNGGGSLQNVLVALGQSNAAALSTGLSV 423
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGAT 305
L SF ++ AL +T+ L+ P++T + QSA+ G ++T A
Sbjct: 424 GLASDSFGALIQALNTSTSANLLSTPSVTTMDNQSATIVVGQNVPFRTGRLTTDGGNVAE 483
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
+ D G+ + P + + G + L I+ EVS V R +TTV +
Sbjct: 484 VIEREDVGITMVVKPRITAGGVVQLEIEQEVSSLTNQAVTGAADLVTNRRVINTTVLAEN 543
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
GGT+VL GL+ DD Q + +PLL +P+LG LF++ +R + +F+ P +
Sbjct: 544 GGTVVLGGLITDDRLQNNQKVPLLGDVPVLGNLFKSRNNSRSKRTLFVFLRPTI 597
>gi|17548364|ref|NP_521704.1| putative GSPD-related protein [Ralstonia solanacearum GMI1000]
gi|17430610|emb|CAD17294.1| putative gspd-related protein [Ralstonia solanacearum GMI1000]
Length = 754
Score = 173 bits (437), Expect = 9e-41, Method: Composition-based stats.
Identities = 81/427 (18%), Positives = 156/427 (36%), Gaps = 55/427 (12%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
+ + + P E A + + + ++ +K ++ V V + + T A+
Sbjct: 176 ALSAAFRKPISLEFRDAQMRQVFEVLSRASGLNFVFDKD--VRTDQKV-TVFLRNSTVAN 232
Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
VV V ++ ++ + + +L D + T
Sbjct: 233 VVNTVLLTNQLEQRVLDGNSILIYPNTPAK-----QRDYQPLTVRTFVLSNSDAKDVANT 287
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
++ + +I V+ + +V+ IQ +++ V + E
Sbjct: 288 VKTILKTRDIVVDEKRNMIVMRDTPDAIQAAEKLVAVHEM-------------------- 327
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
E +V L+V I EV+R L+ +G Q S + + S +
Sbjct: 328 -----PEPEVMLEVEILEVKRSRLQDLGIQLPSQLSLTPLASSSGGTLTLDDLRHLNPTR 382
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
+ + + ++A LA P + + + A G + T +S+
Sbjct: 383 IGATVSPLNVN--VNAAVTD--TNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGFV 438
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360
A +V D G+ L PTV + +RI EVS+ V + R A T +
Sbjct: 439 AENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSIAYEIGTRNATTLL 498
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L G +LAGL++D+ + +P L IP LG LF N+ ++EI ++ TP +++
Sbjct: 499 RLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRVIR 558
Query: 421 PVAMRDL 427
P +L
Sbjct: 559 PAQRPNL 565
>gi|188997001|ref|YP_001931252.1| type II and III secretion system protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932068|gb|ACD66698.1| type II and III secretion system protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 602
Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 97/248 (39%), Gaps = 20/248 (8%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------- 238
Q+ ++ I +V LK +G Q + ++ + + GG
Sbjct: 353 RPYQIAIEARIVQVSTSNLKDLGIQWGGSATNIDNNNTKIITGGGSTSVISGGRYAVDFP 412
Query: 239 ---VSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
+ G F++ V + L AL+ + L++P + I G++A + G +
Sbjct: 413 SSSATFPGGFAIGFVFGGLQNFLDVRLSALQSIGRSKILSKPQIVTIDGETAEISQGYEV 472
Query: 294 LYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
Y T ++ G T SV+ + L+ TP + G I + I P P
Sbjct: 473 PYTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDIIITQDIPDFKNLILGNPPI 532
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+ + + V G I + G+L+ G+P L IPILG LF+ + + E+
Sbjct: 533 QTKTVTSKVVAKDGSVIAIGGILEKTEDLKDSGVPGLMNIPILGYLFKENYKQEKTNELL 592
Query: 412 IAATPFLV 419
I +P +V
Sbjct: 593 IFLSPRIV 600
>gi|153870872|ref|ZP_02000179.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
PS]
gi|152072664|gb|EDN69823.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
PS]
Length = 698
Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats.
Identities = 58/363 (15%), Positives = 125/363 (34%), Gaps = 37/363 (10%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ +G +I + + + ++ ++ I LE FI + + + + + G
Sbjct: 336 RKIGNVAMIDLKKNIDERKQRELSNKKKIKELESLYTEFIRINYAKAKDIEALLRTSGQH 395
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+ T + +K++ L+ QV ++ I + K
Sbjct: 396 SFLSSRGNVSTDERTNTLIIQDTAAKIAEIRKLLAELDTPVR-QVLIESRIVIANNNFSK 454
Query: 212 QIGFQHSITGS----------------------------------SSGPSKSFAADFGGK 237
+G + + + G ++F
Sbjct: 455 ALGVKFGYSANEDLGFGNGIVFGGKKGGDTTFSGGTGFSSDNTATGEGQGENFIVSLPAA 514
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ G + + + L A++ + ++ P + + Q A T G + Y
Sbjct: 515 IANPAAVGLAIGKIGSYLLQLELSAMQSEGSGEIISNPRIITGNQQEAIITQGTEIPYVQ 574
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
+ V + L TP + R+ + + V + GVN G S R+
Sbjct: 575 QAGVGSVAQVQFKQAVLELKVTPQITPDDRVNMELA--VKKDSPGVNIGGNLSIDKREVK 632
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T V + +G T+VL G+ + IP + +P++G LF+N + +++E+ I TP
Sbjct: 633 TNVLVDNGETVVLGGVYERTRSNAINRIPFFADLPLIGELFKNRSKSDDKSELLIFVTPK 692
Query: 418 LVK 420
++K
Sbjct: 693 ILK 695
>gi|260771969|ref|ZP_05880886.1| general secretion pathway protein D precursor (Cholera toxin
secretion protein epsD) [Vibrio metschnikovii CIP 69.14]
gi|260612836|gb|EEX38038.1| general secretion pathway protein D precursor (Cholera toxin
secretion protein epsD) [Vibrio metschnikovii CIP 69.14]
Length = 663
Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats.
Identities = 51/281 (18%), Positives = 104/281 (37%), Gaps = 46/281 (16%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------------- 223
V++ L+I QV ++ I E+ +G Q
Sbjct: 323 VISQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLKDGAVIQYGNSGAQVGQVMVGLE 381
Query: 224 -------------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
+ + D+ + G + + ++ A+
Sbjct: 382 QAKDTTESRAVYDRDGNFLRNETTTKKGDYSTLASALSGVNGAALGVMMGDWTALISAVS 441
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFT 319
++ L+ P++T + ASF G + T ++ +V + G+ L
Sbjct: 442 STSSTNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSNNDNPFQTVERKEVGIKLKVV 501
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
P + + L I+ EVS + A D+ + R+ +TTV + G +VL GL+ +
Sbjct: 502 PQINEGDSVQLSIEQEVSNVLGAQGAVDV-RFAKRQLNTTVMVQDGQMLVLGGLIDERTA 560
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + +P+L IP+LG LFR++ E+ + + P +++
Sbjct: 561 ESESKVPILGDIPLLGYLFRSTNTTVEKKNLMVFIKPTIIR 601
>gi|218782965|ref|YP_002434283.1| general secretion pathway protein D [Desulfatibacillum alkenivorans
AK-01]
gi|218764349|gb|ACL06815.1| General secretion pathway protein D [Desulfatibacillum alkenivorans
AK-01]
Length = 716
Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats.
Identities = 64/350 (18%), Positives = 131/350 (37%), Gaps = 43/350 (12%)
Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-TIQDSQRAVELSETFLSQS 171
+ ++ A + + + + + ++ V+ V+ + + ++ +
Sbjct: 324 VVYLQNATAEEVVKVLQALPGKQTDTKNKAEAPVVSKDVQISADKATNSIIIVA------ 377
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227
++ K V+ L+I V ++ I EV D ++G + + +
Sbjct: 378 --DKEDFKVLKDVIEKLDIP-RSMVYIEALIMEVSTDKAFELGVEWRLGDNFEVNGDQAV 434
Query: 228 ----------------KSFAADFGGKFVSEGGDFSVKGVLDR--------FSFETVLHAL 263
A+ FS+ + + + V+ A
Sbjct: 435 GWAGSGGAGSEGAYTLFPTTAEIASGVAGFPTAFSMGVIGENIKIGDIYFPTLGAVMRAY 494
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFT 319
+ + + L+ P + A + + + G Y T ++ TS D GV L T
Sbjct: 495 KNDSDVHILSAPHILATNNEESEIYVGKNVPYVTRQDTSSSSVDYTSYEYRDVGVTLKIT 554
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
P + + L + EV+ + P+ RKADTTV + G TIV+ GL+ + +
Sbjct: 555 PQISQERLVRLDVFQEVTRLIETAGTTTQPTTYKRKADTTVIVKDGNTIVIGGLIDESTE 614
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
+P L IP LG FR+ RE+T +++ TP +++ P +++S
Sbjct: 615 GGTYKVPCLGDIPWLGWAFRSKTEKREKTNLYVFLTPRIIQTPTEAKEIS 664
>gi|149377297|ref|ZP_01895043.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola
DG893]
gi|149358394|gb|EDM46870.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola
DG893]
Length = 694
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 56/256 (21%), Positives = 101/256 (39%), Gaps = 32/256 (12%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------------ 235
QV+++ I + ++ + +G + S + G
Sbjct: 437 RQVSIEARIVRAQTNVAENLGVRWGGAAYDVRGDGSVISVGGSQGAVGEARDAANGNNNT 496
Query: 236 -----------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
G F+V D F + L ALE +++P + Q+
Sbjct: 497 ITFPGALAVDLGVTGQGASSFAVGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQT 556
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
A SG + Y+ SS+GATSV+ + + L TP + +I + + V++ G
Sbjct: 557 AKIKSGEEIPYQEA-SSSGATSVSFKEAALSLEVTPQITPDDKIIMDLV--VNQDSRGEV 613
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+P+ + T V + +G T+VL G+ + ++ P L IP LG LF+ +
Sbjct: 614 TAGIPAINTNEVTTQVLVGNGETVVLGGIFQSEVATTTTKTPFLGDIPYLGRLFKRTEHI 673
Query: 405 REETEIFIAATPFLVK 420
E +E+ I TP ++K
Sbjct: 674 DERSELLIFITPKIIK 689
>gi|86147328|ref|ZP_01065642.1| fimbrial assembly protein [Vibrio sp. MED222]
gi|85834893|gb|EAQ53037.1| fimbrial assembly protein [Vibrio sp. MED222]
Length = 564
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 65/312 (20%), Positives = 120/312 (38%), Gaps = 31/312 (9%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ ++D + G V + + T + + + ++ L+I + QV
Sbjct: 253 KATDIADMIGGEGAVSMLSERGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVK-QV 311
Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------------------------TGSSSGPSKSF 230
++ I V L ++G + + G +S
Sbjct: 312 QIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFL 371
Query: 231 AADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ G S F V + + L AL++ + ++ P L + + A
Sbjct: 372 NVNLGATSPSASSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQ 431
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
G + Y SS+GATSV + L TP + R+ L + P V+ G+
Sbjct: 432 GTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVVKTGTGE 490
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ ++ T V + +G T+VL G+ + + + +PLL +P+LGALFR S N +
Sbjct: 491 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLPVLGALFRRSYENVGK 550
Query: 408 TEIFIAATPFLV 419
+E+ I TP +V
Sbjct: 551 SELLIFVTPKVV 562
>gi|296390960|ref|ZP_06880435.1| general secretion pathway protein D [Pseudomonas aeruginosa PAb1]
Length = 786
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+V++LL+ QV ++ I EV D + G Q + G
Sbjct: 454 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 512
Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
G + G+ + + AL+ L+ P L + +SA
Sbjct: 513 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 572
Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
S G + + S+ ++ D G+ L+ P + G + L + EVS
Sbjct: 573 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 632
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ R DT++ L G +VL GLL+D++Q +G+P LS +P +G+L
Sbjct: 633 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 692
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425
FR + +R +T + + P++V+ A
Sbjct: 693 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 720
>gi|194291071|ref|YP_002006978.1| general secretory pathway protein d, type II secretion system
[Cupriavidus taiwanensis LMG 19424]
gi|193224906|emb|CAQ70917.1| General Secretory Pathway protein D, type II secretion system
[Cupriavidus taiwanensis LMG 19424]
Length = 831
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 63/282 (22%), Positives = 101/282 (35%), Gaps = 39/282 (13%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------- 242
A QV ++ I EV ++G Q SSS + + A +
Sbjct: 441 ARRAQVYIESMIVEVTATQASELGIQWQGLISSSSGNNNVFAGTNFGTGGQNILNLTLAG 500
Query: 243 ---------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
G ++ V +L AL ++ L+ P L +
Sbjct: 501 ALADSNRSAGIVAAQQLVPDIGGLNLGIVNRAMGLGALLRALGTNGSVNLLSTPNLITLE 560
Query: 282 GQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
+ A G T S + T + D G+ L P + G + ++I
Sbjct: 561 NEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIF 620
Query: 334 TEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
E S V N P+ VR +T V + G IVL GL++D+ + +PLL IP
Sbjct: 621 QESSNVVQATANLIQGPTTNVRSIETNVLVDDGQIIVLGGLIEDNYGDGVQKVPLLGDIP 680
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
+G LFR NR +T + + P++++ A D Y
Sbjct: 681 WIGGLFRYENKNRSKTNLLVFLRPYVMR-TAGATDRLTADRY 721
>gi|217969269|ref|YP_002354503.1| type IV pilus secretin PilQ [Thauera sp. MZ1T]
gi|217506596|gb|ACK53607.1| type IV pilus secretin PilQ [Thauera sp. MZ1T]
Length = 711
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 52/255 (20%), Positives = 91/255 (35%), Gaps = 27/255 (10%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQ--------HSITGSSSGPSKSF------------- 230
QV ++ I E + + +G + I +
Sbjct: 450 APRQVLIEARIVEANKTFSRDLGVRLGLGKSKPWKINDGGAQIGFGSSTLGGSAGSSGSF 509
Query: 231 ---AADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSA 285
A G + G F++ + L ALE R ++ P + + A
Sbjct: 510 RPETATSGADIQNPYGSFALSIFNSSVTRFLNLELQALESDGRGRVVSSPRVLTANQVEA 569
Query: 286 SFTSGGQHLYK-TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
G Q + G +V D + L P++ GRI L + P
Sbjct: 570 LIKQGTQIPIPIPSTQVGGEPTVEYKDAVLSLKVRPSITPDGRIQLSVLVNKDRPDFTNV 629
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
PS + T V + +GGT+V+ G+ ++ ++ +P+L ++P+LG LFR
Sbjct: 630 VLGRPSIDTKSVQTEVTVENGGTLVIGGVYEEQELNGEDRVPVLGELPVLGGLFRTRSTI 689
Query: 405 REETEIFIAATPFLV 419
E+ E+ + TP LV
Sbjct: 690 AEKKELLVFITPRLV 704
>gi|149909433|ref|ZP_01898088.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
[Moritella sp. PE36]
gi|149807543|gb|EDM67492.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
[Moritella sp. PE36]
Length = 747
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 70/336 (20%), Positives = 132/336 (39%), Gaps = 31/336 (9%)
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSD-TVVLHGMVRTIQDSQRAVELSETFLS 169
D++ ++++ L FI I D T +L ++ S+ V E +
Sbjct: 412 RRDLVSKKEVEDLAELHSEFI---QISFAKAGDITKLLSQKDSSLLSSRGTVSFDERTNT 468
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------ 223
++ +S K + + QV ++ + V +I ++G + ++GS+
Sbjct: 469 LLIKDTATVIASVKRIIEVLDVPVRQVIIEARMVSVVDNISDELGIRWGLSGSTDIGSGF 528
Query: 224 ------------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ + F + G+ + + L ALE
Sbjct: 529 GLSSGSIEGNDSLAGGSVPAIGDRLNVNLPVASPAGSIAFQIAGLANGQILDLELSALEA 588
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+A P +T +SA G + Y SS+GAT++ + L TP +
Sbjct: 589 EQKAEVIASPRITTTDKKSAYIEQGTEIPYVES-SSSGATTIAFKKAVLGLWVTPHITPD 647
Query: 326 GRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
+I L ++ + G+ S + T V + +G TIVL G+ K +I+Q+
Sbjct: 648 NKIILDLKINQDTRGEDVKTVGGEAVSIDTQVISTQVLVENGETIVLGGIFKHEIKQIVT 707
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P+L IP LG LFR+++ ++ E+ I TP +V
Sbjct: 708 KVPILGDIPWLGVLFRSTKNISQKRELLIFVTPKVV 743
>gi|126176026|ref|YP_001052175.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
OS155]
gi|217971714|ref|YP_002356465.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
OS223]
gi|125999231|gb|ABN63306.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
OS155]
gi|217496849|gb|ACK45042.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
OS223]
Length = 559
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L ++ + ++ V + L + +N + QV L+ I EV
Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEV 298
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
Q G Q G + G +S+ ++ GV F T+++
Sbjct: 299 TLSDGYQQGIQWDNVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMIN 358
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
L+ + L+ P +TA + Q A G + T S +T +T
Sbjct: 359 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVGGTPPVTTPQVELTPFF 418
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVEL 362
G+ L TP + S G + L + V + + + ++P + +R++DT +
Sbjct: 419 SGIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRA 478
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
SG +++ GL+K + ++ +PLL IP LG LF+N +++TE+ I P +V
Sbjct: 479 ASGDVVIIGGLMKSESIEVVSQVPLLGDIPYLGELFKNRSKQKKKTELIILLKPTVV 535
>gi|313110077|ref|ZP_07795979.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
[Pseudomonas aeruginosa 39016]
gi|310882481|gb|EFQ41075.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
[Pseudomonas aeruginosa 39016]
Length = 714
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 45/269 (16%), Positives = 95/269 (35%), Gaps = 35/269 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228
++++ L+I QV ++ I E K +G + +
Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWNGYGKDGNIGIKDEDG 496
Query: 229 ----------SFAADFGGKFVSE---------GGDFSVKGVLDRFSFETVLHALERATAI 269
+F K S + + D + L A+E+
Sbjct: 497 MNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+++P + ++A G + Y+ SSS ++ + + + L TP + RI
Sbjct: 557 EIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ ++ P +P + + + + G TIV+ G+ + + + +P L
Sbjct: 616 VEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLG 675
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
+P LG LFR + + E+ + TP +
Sbjct: 676 DLPYLGRLFRRDTVSDVKNELLVFLTPRI 704
>gi|329900875|ref|ZP_08272624.1| General secretion pathway protein D / Type II secretion
outermembrane pore forming protein (PulD)
[Oxalobacteraceae bacterium IMCC9480]
gi|327549348|gb|EGF33919.1| General secretion pathway protein D / Type II secretion
outermembrane pore forming protein (PulD)
[Oxalobacteraceae bacterium IMCC9480]
Length = 696
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 59/279 (21%), Positives = 104/279 (37%), Gaps = 31/279 (11%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------SITGSSSGPSK 228
V++ L++ QV ++ I EV + G Q + T S+ +
Sbjct: 359 VIDQLDVR-RAQVYIESLIVEVSAKKAAEFGIQWLGLSGNSTSNYRVGAASTFSTDNIAG 417
Query: 229 SFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
AA G + G ++ + + ALE L+ P L + + A
Sbjct: 418 LAAASKAGTIPAVGAGLTLGVFRQINGALGLGALARALESDDGTNILSMPNLITLDNEEA 477
Query: 286 SFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
G + T + +V D G+ L P + G + + I E
Sbjct: 478 RIIVGQNVPFITGQYTTQASGGGSGVNPFQTVERKDVGLQLRVRPQISEGGTVKMAIYQE 537
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
S N + R DT V + G +VL GL++D ++ E +P L +P++G
Sbjct: 538 TSAVQSSTNTAGI-ITSKRSIDTNVLVDDGQIVVLGGLIEDTLEDGNERVPGLGDLPVVG 596
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
LF+ + NR +T + + P +++ + LS D Y
Sbjct: 597 NLFKYQKRNRTKTNLMVFLRPTIIR-SNEQSLSLSGDRY 634
>gi|149195014|ref|ZP_01872107.1| type II and III secretion system protein:NolW-like protein
[Caminibacter mediatlanticus TB-2]
gi|149134935|gb|EDM23418.1| type II and III secretion system protein:NolW-like protein
[Caminibacter mediatlanticus TB-2]
Length = 579
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 9/244 (3%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFVS- 240
++N L+ ++QV +K I E+ QIG + + S S + +A+ GG ++
Sbjct: 303 IINALD-TPKEQVYVKARILEISNTKAAQIGNRLGLYAGSGTTSGLYTLSANLGGPAIAF 361
Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYK 296
++ + + L LE A + L+EP++ I+ ++ G L
Sbjct: 362 DVASLGLTIPTIKQGIALGATLDLLETYGAAKKLSEPSILCINNTPSTIYVGKTVSVLTG 421
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
+S+T + S T D G+ L P + S ++ L + + + + G + +MP R
Sbjct: 422 KTTSTTTSESYTRQDIGLTLKVKPRIDSDNKVALNVDAVIEDLLPG-SPVNMPITSKRTI 480
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+TT + +G +I++ GL++D+ +PLL IPILGALFR+ + N+++T + I TP
Sbjct: 481 NTTTIVRNGQSIIIGGLVRDNKDITLNKVPLLGDIPILGALFRHKQINKDKTTLVIVLTP 540
Query: 417 FLVK 420
++VK
Sbjct: 541 YIVK 544
>gi|114564903|ref|YP_752417.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina
NCIMB 400]
gi|114336196|gb|ABI73578.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina
NCIMB 400]
Length = 556
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 23/249 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250
QV L+ I EV Q G Q +G + + G+ +S ++ GV
Sbjct: 285 RQVILEAKIIEVTLSDGYQQGIQWENVLGHAGSTNIDFSTSAGQGLSNAITSAIGGVTSI 344
Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------- 300
F T+++ L+ + L+ P +TA + Q A G + T S
Sbjct: 345 NFTGSDFSTIINLLDTQGDVDVLSSPRVTASNNQKAVIKVGNDEYFVTDVSSTTVAGTTP 404
Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMPSYR 352
+T +T G+ L TP + G + L + V + + ++P +
Sbjct: 405 VTTPQVELTPFFSGIALDVTPQIDEYGNVILHVHPSVIDVTSQTKEIKISDSTLELPLAQ 464
Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R++DT + SG +V+ GL+K + + +PLL IP LG F + ++++TE+
Sbjct: 465 SEIRESDTVIRAASGDVVVIGGLMKSENIETVSKVPLLGDIPFLGEAFTSRTKSKKKTEL 524
Query: 411 FIAATPFLV 419
I P +V
Sbjct: 525 IIMLKPTVV 533
>gi|262375159|ref|ZP_06068393.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
gi|262310172|gb|EEY91301.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
Length = 754
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 61/268 (22%), Positives = 103/268 (38%), Gaps = 31/268 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ ++ L+I QV ++ I EV Q+G Q ++ SSG +FG +
Sbjct: 378 ESAIDQLDIR-RQQVLIEAAIIEVEGTDADQLGVQWALGDISSGIGLVNFDNFGTSLKNI 436
Query: 242 GGDFSV-----------------------KGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ R + ++ AL+ T L+ P++
Sbjct: 437 AAGYLTGGGAGAASAVGAGSSLVLGDYREGSDGSRRLYGAMIQALKETTKSNLLSTPSIV 496
Query: 279 AISGQSASFTSGGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+ + A G + T S STG T++ D GV L P + G + L
Sbjct: 497 TMDNEEAYIVVGENVPFVTGSVSTGAAGVANPYTTIERKDVGVTLKVVPHIGEDGTVRLE 556
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
++ EVS+ R T++ G TIVL GL+ D+ ++ +P L I
Sbjct: 557 VEQEVSDVKASKGQAQDLVTSKRAIKTSILAEHGQTIVLGGLISDNTSYGRQAVPGLGAI 616
Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
P LG LFR+ + ++ + I P +V
Sbjct: 617 PGLGRLFRSEGKSNQKRNLLIFIHPTIV 644
>gi|254282305|ref|ZP_04957273.1| general (Type II) secretion pathway (GSP) D protein [gamma
proteobacterium NOR51-B]
gi|219678508|gb|EED34857.1| general (Type II) secretion pathway (GSP) D protein [gamma
proteobacterium NOR51-B]
Length = 346
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 15/239 (6%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG--------- 243
QV ++ +I EV G + + G G + + G
Sbjct: 79 PTQVMIEASIIEVTLTDELSYGLEWTFNGQLGGSEYNGVGTLSDGNFNLGSPDSPLGQLA 138
Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTV 298
FS VL AL + I ++ P++ + +A G Q
Sbjct: 139 RGFSYSVTGGSGDIVAVLQALSTQSLINVISSPSVMVLDNNTAYIHVGDQVPIRSGSTVS 198
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
+ ++T D GV L P+V + G + L ++ V++ ++ + R+ +
Sbjct: 199 NGGNVTENITYRDTGVKLSVRPSVNAGGLVTLDVEQSVTDVGP-IDVTGNRRFLEREIMS 257
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
V + SG ++VL GL++++ +EG+P L K+P++GALF + + TE+ + TP
Sbjct: 258 RVAVRSGESVVLGGLIRENATNSEEGVPWLHKVPLIGALFGTTDKSDTRTELVVMITPR 316
>gi|238792887|ref|ZP_04636517.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909]
gi|238727741|gb|EEQ19265.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909]
Length = 406
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 76/418 (18%), Positives = 162/418 (38%), Gaps = 21/418 (5%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
++ + + + +P E + A I + + +++++ + + + + + DV
Sbjct: 3 LLVLLTSRAFSAKTGVPVTVEFHDAPITVVLQALADYQQLNLVIAAGVEGNLSLRLADV- 61
Query: 71 VSDP-TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
P +A ++ + + + G ++ H+ ++ +L
Sbjct: 62 ---PWEQALAIILRMGRLKV--EREGSVMMVFTEHEMQERRQRAEQKNAPEPLNNFSLAL 116
Query: 130 FIADSNIRVEMVSDTVVL-HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
AD+ E V+D++ L G + + S + + T L + A + L
Sbjct: 117 QYADA----EQVADSLTLPEGGLLSPLGSVVVDKRTNTLLIRDTPASLALLKNWLAEMDL 172
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDF 245
+ QV L I + R+ L+++G + + + S +F + + F
Sbjct: 173 PL---QQVQLAAHIVTMSREHLQELGVRWGMDDAKQARSLRVNNFNVNLPLPNSALSAGF 229
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
+V + R + ALE+ + +A P L Q+AS G Y G
Sbjct: 230 NVARIGGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGGP 288
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELP 363
++ + + + TP +L G+I L ++ + P + + + ++ T + +
Sbjct: 289 TIEFKEAVLGMEVTPKILRNGKITLNLKISQNMPGMAIKRGDSEALLIDKQEIKTQITVN 348
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
G TIVL G+ + Q +P+L+ IP LGALF+ + E+ I TP L+
Sbjct: 349 DGETIVLGGIFQQKNSQGVNKVPILADIPWLGALFKQDTQQQSRRELVIFITPRLISA 406
>gi|311693369|gb|ADP96242.1| type 4 fimbrial biogenesis protein PilQ [marine bacterium HP15]
Length = 688
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 31/255 (12%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------------ 235
QV+++ I + ++ + +G + F
Sbjct: 432 RQVSIEARIVRAQTNVAENLGVRWGGAAYDVSGDNVFTVGGSQGSLQEARDAAAGNSNTI 491
Query: 236 ----------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
G F++ D F + L ALE +++P + Q+A
Sbjct: 492 SFPGALAVDLGVSGEGTSSFAIGWGSDNFLVDLELSALESDGQAEVVSQPRVVTADRQTA 551
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
S SG + Y+ +SS GAT++ + + L TP + +I + + V++ G
Sbjct: 552 SIKSGEEIPYQEATSS-GATNIEFKEAVLSLEVTPQITPDDKIIMDLV--VNQDSRGEVT 608
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+PS T V + +G T+VL G+ + ++ P L IP LG +F+ +
Sbjct: 609 AGIPSINTNSVTTQVLVGNGETVVLGGIFQSEVATQTTKTPFLGDIPYLGRIFKRTEHLD 668
Query: 406 EETEIFIAATPFLVK 420
E +E+ I TP ++K
Sbjct: 669 ERSELLIFITPKIIK 683
>gi|77361610|ref|YP_341185.1| mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus
type IV) [Pseudoalteromonas haloplanktis TAC125]
gi|76876521|emb|CAI87743.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
MshL (pilus type IV) [Pseudoalteromonas haloplanktis
TAC125]
Length = 552
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 63/249 (25%), Positives = 103/249 (41%), Gaps = 21/249 (8%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVL 251
QV L+ I E+ Q G S G S SFA G G +S +
Sbjct: 284 RQVILEAKIIEITLKDEYQQGVNWERISSGLGSSISFATTAGNFGNNLSASLGGVSSLTI 343
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----------VSSS 301
+R F V++ LE ++ L+ P +TA + Q A G + T +++
Sbjct: 344 ERGDFNGVINLLETQGDVQMLSNPRVTATNNQKAVIKVGQDEYFVTNVSSTTVTGTSTTT 403
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSYR 352
+ +T G+ L TP + G + L + V+E + +
Sbjct: 404 SPEIDLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETQEQLKVITLDDQRFELPLAQSN 463
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
+R++DT + SG +V+ GL++ Q + P+L IPI G LF+N R +E+ E+ I
Sbjct: 464 IRESDTVIRAQSGEIVVIGGLMQTSTQDEETKTPILGDIPIFGNLFKNIRKRQEKKELII 523
Query: 413 AATPFLVKP 421
P +V P
Sbjct: 524 LIRPTVVMP 532
>gi|261856527|ref|YP_003263810.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2]
gi|261836996|gb|ACX96763.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2]
Length = 729
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 45/261 (17%), Positives = 91/261 (34%), Gaps = 35/261 (13%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------- 242
QV ++ I + +Q+G + + + + +F V+ G
Sbjct: 459 KQVLIETRIVIATDNFARQLGVRWGVQAGFNRGNSTFGLGSTAPLVASGTSLPTAGASTG 518
Query: 243 --------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G + + + L AL+ ++ P + +G
Sbjct: 519 TVGTAPTDWMVNTPISGTPAGSLGLAILGSNVLLDLELSALQSEGTGEIVSSPKVITTNG 578
Query: 283 QSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
+A + G + Y ++ G + +V+ + TP + I + I + EP
Sbjct: 579 HTALISQGTEIPYIATQTAGGVASNTVSFKKAVLSTEVTPQITPNNNIIMDIDVKKDEPD 638
Query: 341 IGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
P R+ T VE+ +G T+VL G+ + + +P +P +G LF
Sbjct: 639 YTNLLPGTTNPPINTREVKTKVEVKNGETVVLGGIYQFENNNSINKVPFFGDLPGIGNLF 698
Query: 399 RNSRFNREETEIFIAATPFLV 419
+N + E+ I TP ++
Sbjct: 699 KNKEVKNQRLELLIFVTPKII 719
>gi|152986567|ref|YP_001350166.1| putative type II secretion system protein [Pseudomonas aeruginosa
PA7]
gi|150961725|gb|ABR83750.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
Length = 803
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 58/268 (21%), Positives = 104/268 (38%), Gaps = 26/268 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+V++LL+ QV ++ I EV D + G Q +
Sbjct: 471 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVIGGVNFGQSALNTAA 529
Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
G + G+ + + AL+ L+ P L + +SA
Sbjct: 530 RNSIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 589
Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
S G + + S+ ++ D G+ L+ P + G + L + EVS
Sbjct: 590 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 649
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ R DT++ L G +VL GLL+D++Q +G+P LS +P +G+L
Sbjct: 650 SVDERASTVAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 709
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425
FR + +R +T + + P++V+ A
Sbjct: 710 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 737
>gi|237756260|ref|ZP_04584819.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691579|gb|EEP60628.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 602
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 95/248 (38%), Gaps = 20/248 (8%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------- 238
Q+ ++ I +V LK +G Q ++ + + GG
Sbjct: 353 RPYQIAIEARIVQVSTSNLKDLGIQWGGRATNIDNNNTKIITGGGSTSIISGGRYAVDFP 412
Query: 239 ---VSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
+ G F++ V + L AL+ + L++P + I G++A + G +
Sbjct: 413 SSSATFPGGFAIGFVFGGLQNFLDVRLSALQSIGKSKILSKPQIVTIDGETAEISQGYEV 472
Query: 294 LYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
Y T ++ G T SV+ + L+ TP + G I + + P P
Sbjct: 473 PYTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLILGNPPI 532
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+ + + V G + + G+L+ G+P L IPILG LF+ + E+
Sbjct: 533 QTKTVTSKVVAKDGSVVAIGGILEKTEDVKDSGVPGLMNIPILGYLFKEKYQQEKTNELL 592
Query: 412 IAATPFLV 419
I +P +V
Sbjct: 593 IFLSPKIV 600
>gi|294142972|ref|YP_003558950.1| general secretion pathway protein D [Shewanella violacea DSS12]
gi|293329441|dbj|BAJ04172.1| general secretion pathway protein D [Shewanella violacea DSS12]
Length = 712
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 62/305 (20%), Positives = 109/305 (35%), Gaps = 47/305 (15%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ +ET + V+N L+I QV ++ I EV G Q +
Sbjct: 314 IMAHAETNALVITAQPDQMRTIDSVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGIQWAT 372
Query: 220 TGSSSGPSKSFAADFG--------------------------------------GKFVSE 241
+ G +
Sbjct: 373 ASGGGTQFNNLGPTIGEIGAGVWLAKDQKASQTCTGSGDNKTCTDNPDTPGDITLLAQAL 432
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G + + F ++ A+ T LA P++T + Q ASF G + T S S
Sbjct: 433 GKVNGMAWGVATGDFAALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSQS 492
Query: 302 ------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
T+V + GV L P + + L I+ EVS ++ R+
Sbjct: 493 SSNGNENPFTTVERKEVGVKLKVIPQINEGSSVKLTIEQEVSGINGKTAVD--VTFATRR 550
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
TTV SG +VL GL+ +++Q+ + +P L +P++G LFR+S ++++ + I
Sbjct: 551 LTTTVMADSGQIVVLGGLINEEVQESVQKVPFLGDLPLIGHLFRSSSSSKKKKNLMIFIK 610
Query: 416 PFLVK 420
P +++
Sbjct: 611 PTIIR 615
>gi|258406114|ref|YP_003198856.1| type II and III secretion system protein [Desulfohalobium retbaense
DSM 5692]
gi|257798341|gb|ACV69278.1| type II and III secretion system protein [Desulfohalobium retbaense
DSM 5692]
Length = 499
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 54/256 (21%), Positives = 102/256 (39%), Gaps = 21/256 (8%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------------S 224
V+N L Q+ ++ +I E ++ +++G + +
Sbjct: 242 VLNHLE-RPRKQIHIEASIVEATQNTARELGMRWRGRYVTSGRGIEDVGIIGDAQEPEDW 300
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
G + + G + +V G + + L ALE+ + LA P+LT + QS
Sbjct: 301 GSAITTLPGSGTDTLGGLKLGTVVGEIAGNVLFSQLQALEKEGQVNILASPSLTTMDNQS 360
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
AS G+ + + G V D + L P ++ + + I E N
Sbjct: 361 ASTQ-HGERVPYETTDEDGDRVVKFEDVAMGLKVHPRIIEGDLMAMDIVVTKDEVDFSQN 419
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
P R ++ +T + + +G TIV++GL K + + G+P L K+P L LF+ +
Sbjct: 420 VQGNPLIRTKETETNLLVRNGETIVISGLSKQTVSGTEHGVPGLRKVPGLSWLFKGIDKS 479
Query: 405 REETEIFIAATPFLVK 420
+ E + TP ++
Sbjct: 480 EDMEEFMVFITPTILD 495
>gi|110833294|ref|YP_692153.1| general (type II) secretion pathway protein D [Alcanivorax
borkumensis SK2]
gi|110646405|emb|CAL15881.1| general (type II) secretion pathway protein D [Alcanivorax
borkumensis SK2]
Length = 710
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 65/341 (19%), Positives = 122/341 (35%), Gaps = 29/341 (8%)
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ L D + L+ F+ +++ D + + S +A E
Sbjct: 278 ETNNSGAKVIRLSHGDAKSMAELLKNFVDGASVN-RAGGDGKTTSVALNNNEVSIQADES 336
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ ++ S V++ L++ Q+ ++ I E+ + K +GFQ+ +
Sbjct: 337 LNALVVRAKPAMMKQIQS--VISKLDVR-RAQILIEAAIVEISGEQGKNLGFQYVGGSNE 393
Query: 224 SGPSKSFAADFGGKFVSE------------------GGDFSVKGVLDRFSFETVLHALER 265
G G S + ++ AL
Sbjct: 394 DGVGAVNFGGNGLSVNSVVQALASDDPSGLSLGDGITAGLGETDSDGDLKWGALIQALST 453
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLHF 318
++ + L+ P++ + + AS G + T S+ T++ D G+ L
Sbjct: 454 SSDVNLLSTPSILTLDNEEASIIVGENVPFVTGQSTNTGSGVSNPFTTIQREDVGLTLKV 513
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
TP V I L ++ E S RK +TV TI L GL+KDDI
Sbjct: 514 TPHVAGLSTIRLELEQESSAVKDSAGDAVDIVTTTRKLQSTVLADDAETIALGGLIKDDI 573
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +P L IP+LG LFR++ +R ++ + + P ++
Sbjct: 574 RVTVRKVPFLGDIPVLGFLFRSTSKDRVKSNLMVFLKPTIL 614
>gi|206577210|ref|YP_002240367.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae
342]
gi|206566268|gb|ACI08044.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae
342]
Length = 648
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 67/368 (18%), Positives = 137/368 (37%), Gaps = 45/368 (12%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149
ANV+ +++ + + I + L R+ N +V +D V VL G
Sbjct: 217 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 276
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196
+ ++Q+ +++ + + +++ ++V+ L+I QV
Sbjct: 277 ISSSLQNDKQSAKPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 335
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242
++ IAEV+ +G Q + + +
Sbjct: 336 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTVIAGANQYNKDGTVSSSLAS 395
Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ + ++ +L AL +T LA P++ + A+F G + T S
Sbjct: 396 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 455
Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
+T +V G+ L P + + L I+ EVS ++ ++
Sbjct: 456 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 515
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + + +
Sbjct: 516 TRTVNNAVLVGSGETVVVGGLLDKSVTDTADKVPLLGDIPVIGALFRSESKKVSKRNLML 575
Query: 413 AATPFLVK 420
P +++
Sbjct: 576 FIRPTIIR 583
>gi|218710790|ref|YP_002418411.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32]
gi|218323809|emb|CAV20166.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32]
Length = 572
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 65/312 (20%), Positives = 120/312 (38%), Gaps = 31/312 (9%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ ++D + G V + + T + + + ++ L+I + QV
Sbjct: 261 KATDIADMIGGEGAVSMLSERGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVK-QV 319
Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------------------------TGSSSGPSKSF 230
++ I V L ++G + + G +S
Sbjct: 320 QIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFL 379
Query: 231 AADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ G S F V + + L AL++ + ++ P L + + A
Sbjct: 380 NVNLGATSPSASSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQ 439
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
G + Y SS+GATSV + L TP + R+ L + P V+ G+
Sbjct: 440 GTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVVKTGTGE 498
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ ++ T V + +G T+VL G+ + + + +PLL +P+LGALFR S N +
Sbjct: 499 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLPVLGALFRRSYENVGK 558
Query: 408 TEIFIAATPFLV 419
+E+ I TP +V
Sbjct: 559 SELLIFVTPKVV 570
>gi|251789515|ref|YP_003004236.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya
zeae Ech1591]
gi|247538136|gb|ACT06757.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya
zeae Ech1591]
Length = 691
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 69/451 (15%), Positives = 140/451 (31%), Gaps = 40/451 (8%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99
G + I++ N + D + V++ A V + + + + G A +
Sbjct: 158 TGPTEYINLIRNFSQQRETKEDRRKVMIFPLRYASVSDRTIQYRDQRLVI----PGVATI 213
Query: 100 I--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN--IRVEMVSDTVVL-------H 148
+ L+ + + MT + ++ +L
Sbjct: 214 LNELMDGNRNTPAGAAAAGSGIGSDGGMTTADGAGGGQDASKAIEMNARSMLAKLASRNS 273
Query: 149 GMVRTIQDSQRAV--ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAE 204
G + + + ++S + + + + L++ Q V + I +
Sbjct: 274 GGASSASRKKDQLNGKVSADVRNNALLVRDDEKRRDEYQQLIDKIDVPQNLVNIDAIILD 333
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
V R L ++ + + + FVS D F + ALE
Sbjct: 334 VDRTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS-----------DFKRFSADIQALE 382
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+A P++ + Q A +V G L TP V+
Sbjct: 383 GEGTASIVANPSVLTLENQPAVIDFSRTAFITAT--GERVANVQPVTAGTSLQVTPRVVG 440
Query: 325 -PGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLK 382
G +++ ++ + + N S R T + +VL G ++
Sbjct: 441 HGGSSSIQLVIDIEDGQVETNTEGTASGVKRGTVSTQALIGENRALVLGGFHVEESGDRD 500
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
+ +PLL IP +G LF + + E TP L+ D+ +DA
Sbjct: 501 KRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSADNRRQLNDAMG 560
Query: 443 FFFNRVNK--IYGPKEASEVEGQNYKGAIGF 471
R +K ++G E + + + + GF
Sbjct: 561 RVAQRNSKTDLFGTVENALRDLASGQTPAGF 591
>gi|290473150|ref|YP_003466011.1| putative transporter [Xenorhabdus bovienii SS-2004]
gi|289172444|emb|CBJ79211.1| putative transport protein, possibly in biosynthesis of type IV
pilin (fragment) [Xenorhabdus bovienii SS-2004]
Length = 361
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 52/229 (22%), Positives = 87/229 (37%), Gaps = 6/229 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--L 251
QV + I R+ L ++G + S + V +
Sbjct: 132 QQVQITAHIVTSSREALHELGIHWGMAADPLNRSIGLNRLNLHQSAGNQSHRLVLNTARI 191
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
E L ALE+ + +A P LTA Q AS G Y T++ +
Sbjct: 192 HASLLEMELSALEQENQLDIIASPRLTASHQQPASIKQGSDIPYLV--QDKDKTTIQFKE 249
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ + TP +L G+I L ++ + P I + + ++ T V + +G T++
Sbjct: 250 AVLGMEVTPHILRKGKIRLALKISQNAPGLPISQGGNENLAIDKQEIVTQVTVRNGETLI 309
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L G+ + + +P LS +P+LGALF E+ I TP L
Sbjct: 310 LGGIFQQKKGASLQKVPYLSDLPLLGALFNQKGEQHSRRELVIFITPQL 358
>gi|190574660|ref|YP_001972505.1| putative general secretion pathway protein D [Stenotrophomonas
maltophilia K279a]
gi|190012582|emb|CAQ46210.1| putative general secretion pathway protein D [Stenotrophomonas
maltophilia K279a]
Length = 792
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 83/462 (17%), Positives = 161/462 (34%), Gaps = 39/462 (8%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
LQ+ ++ + + P K A + V + L + ++ ++
Sbjct: 197 KLQQGIAVDVAAMVAPLLDAQGAEPTQKVVVMADPRSNSVLLRSSSPGRTRLARQLVEKL 256
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTM--YLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ + + + L G GQ++ +G + + L
Sbjct: 257 DRAQDES--GNLHVVYLRNAQANQLAGVLRGVVAGQSDAPAMG-SNEGITPLPGDASHST 313
Query: 121 AHLEMTLRRFIADSNI----RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
++ N R++ + G Q+ T +
Sbjct: 314 PAQPSQPQQAKPGGNALESQRLDPSRRDPIDAGSTGFSQNGISVQADVATNTLLISAPEP 373
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
+ ++V++ L+ QV ++ I EV + ++G Q + + F GG
Sbjct: 374 VYRNLRRVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTTGG 432
Query: 237 KFVSEG-------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
++ G ++ GV + + + +AL+ L+ P L
Sbjct: 433 SGLNTTARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSKGGANILSTPNL 492
Query: 278 TAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+ ++AS G + + S+ ++ D G+ L P + G +
Sbjct: 493 MTLDNEAASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVK 552
Query: 330 LRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
L I EVS R DT+V L G +VL GLL+D + ++ +P L
Sbjct: 553 LDIYQEVSSIDAQSANSTAGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGL 612
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429
KIP+LGALFR+ R +T + + P +V+ P A + L+R
Sbjct: 613 GKIPVLGALFRSDTRKRAKTNLMVFLRPHVVREPAAGQRLTR 654
>gi|238783115|ref|ZP_04627141.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970]
gi|238715911|gb|EEQ07897.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970]
Length = 405
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 72/380 (18%), Positives = 133/380 (35%), Gaps = 31/380 (8%)
Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
V V AD + + + G ++ L+ +Q L + + + E +
Sbjct: 30 VSVVLQALADYQQLN---LVVAAGVSGNISLRLVDVPWEQALTIILRMGHLKVEREGAVM 86
Query: 129 RFIADSNIRVEMVSDTVVLHGMVRT----IQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
+ +I + A +++++ + + K
Sbjct: 87 MVFTEQDIEERQQRTKQKTEPDSLSNLTLALQHADAEQVADSLDESELLSPLGSVMVDKR 146
Query: 185 MNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
N L I QV L I + R+ L+++G + + S
Sbjct: 147 TNTLLIRDTPASLAVLKGWLAEMDLPLQQVQLAAHIVTMSRENLQELGVRWGMGESQHAT 206
Query: 227 S---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
S F + F+V + R + ALE+ + +A P L A Q
Sbjct: 207 SLRVNDFNVNLPLANSVVNAGFNVARIGGRLLELEL-SALEQENQVDIIASPRLVASHLQ 265
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
+AS G Y GA S+ + + + TP +L G+I L ++ + P + +
Sbjct: 266 TASIKQGSDIPYAVARGDKGAVSIEFKEAVLGMEVTPKILRNGKITLNLKISQNMPGMTI 325
Query: 344 --NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ ++ T + + G TIVL G+ + Q +P+L+ IP LGALF+
Sbjct: 326 KRGDTEALLIDKQEIKTQITVNDGETIVLGGIFQQKNNQAVNKVPILADIPWLGALFKQD 385
Query: 402 RFNREETEIFIAATPFLVKP 421
+ E+ I TP L+
Sbjct: 386 TKQQSRRELVIFITPRLISA 405
>gi|217971366|ref|YP_002356117.1| general secretion pathway protein D [Shewanella baltica OS223]
gi|217496501|gb|ACK44694.1| general secretion pathway protein D [Shewanella baltica OS223]
Length = 706
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 47/305 (15%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ +ET + + V+N L+I QV ++ I EV G Q +
Sbjct: 315 IMAHAETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAA 373
Query: 220 TGSSSGPSKSFAADFG---------------------------------------GKFVS 240
+ G +
Sbjct: 374 KAGGGTQFNNLGPTIGEIGAGVWQAQGEKGSSITTLDPEGKPVVTTNPDKRGDVTLLAQA 433
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----Y 295
G + + F ++ A+ T LA P++T + Q ASF G +
Sbjct: 434 LGKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGST 493
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
+ S+S +V + GV L P + + L I+ EVS S+ R+
Sbjct: 494 ASSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRR 551
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
TTV SG +VL GL+ +++Q+ + +P L IPI+G LF++S + + + I
Sbjct: 552 LTTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIK 611
Query: 416 PFLVK 420
P +++
Sbjct: 612 PTIIR 616
>gi|121610459|ref|YP_998266.1| general secretion pathway protein D [Verminephrobacter eiseniae
EF01-2]
gi|121555099|gb|ABM59248.1| general secretion pathway protein D [Verminephrobacter eiseniae
EF01-2]
Length = 740
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 61/314 (19%), Positives = 113/314 (35%), Gaps = 37/314 (11%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
QV ++ I E+ + L Q G Q G++SG S
Sbjct: 405 GRRAQVLVESLIVEISANKLAQFGVQWQSLLGKKGASLLGAIGTNSGQSGGNITSLTAAL 464
Query: 239 VSEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
S + ++ + + L+ + L+ P L + +
Sbjct: 465 ASGSTTSIATAANSLGQGMNLLLAPRINGQYYLGALANFLQNSGDANVLSTPNLMTLDNE 524
Query: 284 SASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
A G + T S + T+V D G++L P + G + L + E
Sbjct: 525 EAKIVIGNNVPFVTGSYANSSSNSTVNPFTTVQRQDVGLMLRVRPQINENGTVKLSVYQE 584
Query: 336 VSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
VS+ + + P+ R ++ V + G IV+ GLL+D ++ +P+L +P+L
Sbjct: 585 VSKIDASTLTSPNGPTTSKRSIESNVLVEDGSIIVIGGLLEDSYSLNQDKVPVLGDMPVL 644
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
G LFR+ + R +T + I P +++ A D+ D Y + + +
Sbjct: 645 GNLFRSEKRTRNKTNLMIFLRPTVLRSSASSDI-LTADRYDAIRALQLGIQPVAHPMLDA 703
Query: 455 KEASEVEGQNYKGA 468
+A+ V G
Sbjct: 704 VDAAPVLPPPRPGT 717
>gi|153003562|ref|YP_001377887.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5]
gi|152027135|gb|ABS24903.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5]
Length = 893
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 60/307 (19%), Positives = 106/307 (34%), Gaps = 37/307 (12%)
Query: 147 LHGMVRTIQ-DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
+ G V+ + + T + Q A ++ ++ L+ QV ++ I E
Sbjct: 579 VSGRVKDVLSERGSVSTDERTNVLIVKDVQEALVRAEGLVRNLDTEIP-QVLIESRIVEA 637
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA--------------------------------D 233
+ K +G Q S + + +
Sbjct: 638 SSNFNKALGVQWGGNASFTQATGNPTGVAFPNNVAAAGGAGPGNSFGTAANPNYAVSLPA 697
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
G F+ L ALE ++T++ P + I + A+ G
Sbjct: 698 PVGDGQGGALGLVFGSAGGAFNLNLRLSALENNGVVKTISAPKIATIDNREATI--GQGI 755
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYR 352
S + T + + L TP V + G I L+I+ ++P + PS
Sbjct: 756 SIPFSQVSASGVNTTFIEAKLELKVTPHVSADGSILLKIKATNNQPNPQLTGANGQPSIS 815
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R+A+T V + G T V+ G+ +P L K+P+LG FRN + TE+ I
Sbjct: 816 KREAETEVLVKDGETTVIGGIYTRQTANRTSEVPFLGKLPLLGYFFRNMSEQDDHTELLI 875
Query: 413 AATPFLV 419
TP ++
Sbjct: 876 FITPRIL 882
>gi|107100151|ref|ZP_01364069.1| hypothetical protein PaerPA_01001172 [Pseudomonas aeruginosa PACS2]
Length = 786
Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats.
Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+V++LL+ QV ++ I EV D + G Q + G
Sbjct: 454 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 512
Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
G + G+ + + AL+ L+ P L + +SA
Sbjct: 513 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 572
Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
S G + + S+ ++ D G+ L+ P + G + L + EVS
Sbjct: 573 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 632
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ R DT++ L G +VL GLL+D++Q +G+P LS +P +G+L
Sbjct: 633 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 692
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425
FR + +R +T + + P++V+ A
Sbjct: 693 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 720
>gi|26987782|ref|NP_743207.1| general secretion pathway protein D [Pseudomonas putida KT2440]
gi|24982477|gb|AAN66671.1|AE016295_4 type II secretion pathway protein XcpQ [Pseudomonas putida KT2440]
Length = 584
Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats.
Identities = 65/344 (18%), Positives = 121/344 (35%), Gaps = 34/344 (9%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G + L + + LR + + VE + G R + + +
Sbjct: 197 GSGSTQVIYLRHANAGEVVKVLRGLSQEGAVPVEGAGEA---EGKDRPVVPAAGGSGIRL 253
Query: 166 TFLSQSGRNQYANSSSK-----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S+ ++ L+I QV ++ IAEV +++G Q
Sbjct: 254 EYEEGTNAVVMVGPDSELAAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFA 312
Query: 221 GSSSGPSKSFAADFGGK--------------------FVSEGGDFSVKGVLDRFSFETVL 260
G G + G + F+F ++
Sbjct: 313 DEKFGAGIVNFGSNGVNIASIAGAAASGDNEALGDLLSTTTGATAGIGHFGGGFNFAMLV 372
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVL 316
+AL+ + L+ PTL + AS G + + T S + ++ + GV L
Sbjct: 373 NALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKL 432
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
P + + L I EVS +A D+ R+ T V + G ++L GL+ D
Sbjct: 433 RIKPQINIDNSVRLDIVQEVSSIADTSSASDV-ITNKREIKTKVMVEDNGLVILGGLISD 491
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++ + +PLL IP LG LFR+ + + + P +++
Sbjct: 492 ELSTSDQRVPLLGDIPYLGRLFRSDATRNTKQNLMVFIRPRILR 535
>gi|330954627|gb|EGH54887.1| general secretion pathway protein D [Pseudomonas syringae Cit 7]
Length = 356
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 65/305 (21%), Positives = 110/305 (36%), Gaps = 20/305 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G +++ S R + + + L+ QV ++ I EV+
Sbjct: 39 GNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVQLT 97
Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+G Q S T + + G + + + + L
Sbjct: 98 GELDMGVQWYLGRLAGNSGTTGNVTNTSGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 157
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGV 314
ALE + L+ P+L ++ Q A G S+ T +SV GV
Sbjct: 158 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTDTTLSSVEYVQTGV 217
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLA 371
+L P + G + + IQ +VS N D P R T V SG T++L
Sbjct: 218 ILDVVPRINPGGLVYMDIQQQVSSADTNANNNDANGNPRISTRSVATQVAAQSGETVLLG 277
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GL+K D + +P L +IP L LF N+ +++ TE+ + TP ++ + +
Sbjct: 278 GLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI--TSSSQARQVT 335
Query: 432 DHYSV 436
D Y
Sbjct: 336 DDYRQ 340
>gi|330938340|gb|EGH41971.1| type II and III secretion system protein [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 247
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 10/241 (4%)
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ +F++ +++A+E + TLA P+L A++G
Sbjct: 4 GINVTPGAVGGITPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNG 63
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-- 340
QSASF +GG+ + S+ ++GV L TPTV+ RI L++ EVSE
Sbjct: 64 QSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFS 123
Query: 341 --IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
I + +P+ +R+ DT++ L G + V++GL+ + P L IPILGA F
Sbjct: 124 AGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFF 183
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFF--NRVNKIY 452
R+S+ R+E E+ + TP LV+P+A S P + + +F ++
Sbjct: 184 RSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEGLRTYDPSFPRLYFLENGDFDRRD 243
Query: 453 G 453
G
Sbjct: 244 G 244
>gi|294139057|ref|YP_003555035.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12]
gi|293325526|dbj|BAJ00257.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12]
Length = 560
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 55/250 (22%), Positives = 92/250 (36%), Gaps = 24/250 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAADFGGKFVSEGGDFSVK 248
QV ++ I EV Q G G S + ++
Sbjct: 280 RQVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTNIEFGTSSGGNSLSDQITSVIGGVTS 339
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------- 300
F +++ L+ + L+ P +TA++ Q A G + T S
Sbjct: 340 LKFSGTDFAAMINLLDTQGDVDVLSSPRVTALNNQKAVIKVGTDEYFVTDVSSTTVAGNT 399
Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------ 352
+T +T G+ L TP + G + L I V +
Sbjct: 400 PITTPEVELTPFFSGIALDVTPQIDGEGNVLLHIHPSVISIKEQTKTIKISDSTLELPLA 459
Query: 353 ---VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+R++DT + SG +V+ GL+K + +L +PLL IP+LG LF N + ++TE
Sbjct: 460 QSDIRESDTVIMARSGDVVVIGGLMKSENIELLSKVPLLGDIPLLGELFTNRSKSLKKTE 519
Query: 410 IFIAATPFLV 419
+ I P +V
Sbjct: 520 LVILLKPTVV 529
>gi|238897480|ref|YP_002923157.1| putative protein exporter, transport across outer membrane (General
Secretory Pathway) [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465235|gb|ACQ67009.1| putative protein exporter, transport across outer membrane (General
Secretory Pathway) [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 687
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 41/299 (13%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+T +Q S + ++ L+I QV ++ I EV G Q
Sbjct: 330 IAASKKTNALVVTASQDVMQSIRSIIEQLDIR-RAQVHVEALIVEVAEISDINFGVQWQA 388
Query: 220 TGSSSGPSKSFAADFGGKFVS---------------------------------EGGDFS 246
S + G ++ G
Sbjct: 389 NNSLIQFNNGHQIPLGALTLARRHAESKTGNTLNQNETFLPSQVSSDISLLSKLLSGFSG 448
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSS 301
K + + ++ ++ A++ +++ L+ P++T + Q ASF G T +++
Sbjct: 449 AKVGIIKGDWQALVQAVKNDSSVNVLSTPSITTLDNQEASFMVGEDVPVLTGSAANANNT 508
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+V GV+L TP + + L I+ EVS+ + RK TTV
Sbjct: 509 NPFNTVERRKIGVMLKVTPQINEGNTVQLLIEQEVSKIQGETKLD--IKFAERKLKTTVL 566
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G IVL GLL ++ + +P+L IPILG LF+++ + + + I P +++
Sbjct: 567 ADDGQLIVLGGLLDEESGESVSKVPVLGDIPILGHLFKSTVNKKTKRNLMIFIRPTILR 625
>gi|330989446|gb|EGH87549.1| general secretion pathway protein D [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 778
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ T + + ++V++ L+ QV ++ I EV D Q G Q
Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484
Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
+ G + G G ++ G+ + + +
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGFNVGVVRGAVTIPGIGEVLDLKVLAR 544
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
AL+ L+ P L + ++AS G + T +S+ +V + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ L+ P + G + L I EVS + R DT++ L G +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L+D Q E +P LS+IP+LG LFRN + +T + + P++++
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 711
>gi|308272047|emb|CBX28655.1| hypothetical protein N47_G39790 [uncultured Desulfobacterium sp.]
Length = 667
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 60/240 (25%), Positives = 98/240 (40%), Gaps = 12/240 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS--VKGV 250
QV ++ IA++ +G +I + G S + S G
Sbjct: 379 PRQVMIEGMIAQIDLKDDLSLGLAWAINTKNFGGSPANITFNANGLTSATSSTGLRFIGT 438
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGAT 305
+ V+ ALE + + LA P + + A+ G Q T S+
Sbjct: 439 DSGDAVRAVVTALESQSRGKLLAAPHILVSDNREATIQVGQQVPIVTSSTLATSTQAAQQ 498
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTV 360
++ D G++L P V G + L I+ EVS V + + + T +
Sbjct: 499 TIQYKDIGIILKVKPQVNDSGLVSLEIKQEVSSFSSLSSADTVTSNEDILINKTEVSTNL 558
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G TI++ GL+++D + + GIP L KIPILG LF + + TE+ I TP +VK
Sbjct: 559 VVQDGHTIIIGGLIREDKSKSRTGIPWLVKIPILGFLFGGTNDTNKRTELIILLTPHVVK 618
>gi|288937072|ref|YP_003441131.1| general secretion pathway protein D [Klebsiella variicola At-22]
gi|290512493|ref|ZP_06551859.1| general secretion pathway protein D [Klebsiella sp. 1_1_55]
gi|288891781|gb|ADC60099.1| general secretion pathway protein D [Klebsiella variicola At-22]
gi|289774834|gb|EFD82836.1| general secretion pathway protein D [Klebsiella sp. 1_1_55]
Length = 651
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 67/368 (18%), Positives = 137/368 (37%), Gaps = 45/368 (12%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149
ANV+ +++ + + I + L R+ N +V +D V VL G
Sbjct: 220 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 279
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196
+ ++Q+ +++ + + +++ ++V+ L+I QV
Sbjct: 280 ISSSLQNDKQSAKPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 338
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242
++ IAEV+ +G Q + + +
Sbjct: 339 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTVIAGANQYNKDGTVSSSLAS 398
Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ + ++ +L AL +T LA P++ + A+F G + T S
Sbjct: 399 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 458
Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
+T +V G+ L P + + L I+ EVS ++ ++
Sbjct: 459 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 518
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + + +
Sbjct: 519 TRTVNNAVLVGSGETVVVGGLLDKSVTDTADKVPLLGDIPVIGALFRSESKKVSKRNLML 578
Query: 413 AATPFLVK 420
P +++
Sbjct: 579 FIRPTIIR 586
>gi|238022253|ref|ZP_04602679.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147]
gi|237866867|gb|EEP67909.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147]
Length = 699
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 51/257 (19%), Positives = 96/257 (37%), Gaps = 24/257 (9%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSG----------- 225
++ L++ QV ++ I E + +++G + ++ G
Sbjct: 435 LIEELDVPAR-QVMVEARIVEASDTLSRELGVKFGGVRAGSTSWANNWGLATERNSRGVR 493
Query: 226 ---PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
F + S G +V + L A E +T++ P +
Sbjct: 494 NGSSGVLFEPNINVPVASAVGSIAVVKSFSSVTLGLELSASEAEGRSKTISTPRVLTQDR 553
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
Q A G Q Y S G+T+ + D + L P + +I + + P
Sbjct: 554 QEAEIKQGYQVPYT-TRDSDGSTTTSFKDAVMSLKVLPRITPDNKIIMDVTINKDTPDNT 612
Query: 343 -VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
++ PS R + T + GGT+V+ G+ ++ IQ + +P+L +P+LG LF+
Sbjct: 613 YQSSEGEPSIRTQSVKTQAMIEDGGTLVVGGVYQEVIQNNVKKVPMLGDLPVLGNLFKTR 672
Query: 402 RFNREETEIFIAATPFL 418
N E+ TP +
Sbjct: 673 SRNNSRNELLFFITPRI 689
>gi|222109918|ref|YP_002552182.1| type IV pilus secretin pilq [Acidovorax ebreus TPSY]
gi|221729362|gb|ACM32182.1| type IV pilus secretin PilQ [Acidovorax ebreus TPSY]
Length = 696
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 23/246 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT--------------------GSSSGPSKSFAAD 233
QV ++ I E R + +G + GS P S A
Sbjct: 447 RQVMIEARIVEARDTFGRSLGVRLGGGSRTGGSAVGGTYDNVAGPTGGSGMSPFVSLPAS 506
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
G S+ L A+E + ++ P L A G ++
Sbjct: 507 LSGVSTVGSFALSIFNSNASRFLSLELSAMEADGQGKIVSSPRLITADQTKALIEQGTEY 566
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
Y + GAT++ + L TP + G I L + +V++ G + +
Sbjct: 567 PYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGNIILDL--DVNKDSRGESTTQGVAIDT 623
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
+ T V + +GGT+V+ G+ + + + IP+L +P++G LF+N + E+ +
Sbjct: 624 KHIKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGNLFKNRTKESTKREMLVF 683
Query: 414 ATPFLV 419
TP ++
Sbjct: 684 ITPKVI 689
>gi|92112745|ref|YP_572673.1| type II and III secretion system protein [Chromohalobacter
salexigens DSM 3043]
gi|91795835|gb|ABE57974.1| type II and III secretion system protein [Chromohalobacter
salexigens DSM 3043]
Length = 668
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 67/361 (18%), Positives = 134/361 (37%), Gaps = 47/361 (13%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
+IL H N D+++ + L R+ + + R + ++ V
Sbjct: 308 LILQSHGLASRRNGDVIVVAPVDELAQMERQTLEN---RAQSEQLAPLVTDYV--QVRYA 362
Query: 159 RAVELSETFLSQSGRN---QYANSSSKKVMNLLNIAGED------------------QVT 197
+A +L+ G + + + N L + QV
Sbjct: 363 KATDLAAMLRGSEGFGLLSERGRVTVDERTNTLLVRDTREQLASIRGMLERLDVPVRQVQ 422
Query: 198 LKVTIAEVRRDILKQIGFQHSITG-------------------SSSGPSKSFAADFGGKF 238
++ I R +++G I+ S + + + G
Sbjct: 423 IEARIVIARDTASRELGVNWGISQRQGVTFDDDGVGSVVDRNPSGANRGSAGLSVDLGDS 482
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G FS + + L ALE +T+++P + + ++A G + Y+
Sbjct: 483 DGSGSTFSFGYLSGDVLLDLELRALESEGKSQTISQPKVITANQKTAVIKQGQEIPYQES 542
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
+SS GAT+V + + L TP + G I + + ++ V + P+ +T
Sbjct: 543 TSS-GATNVEFKEAVLSLEATPQITPDGSIVMDLLIN-NDTVADNSYDGAPAIDTNSIET 600
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V + G T+VL G+L + + P L +P++G+LFR ++ + E+ E+ I TP +
Sbjct: 601 QVLVDDGATVVLGGILTSEQLRNLYKTPFLGDLPLIGSLFRYTQESNEKVELLIFITPTI 660
Query: 419 V 419
+
Sbjct: 661 I 661
>gi|298527731|ref|ZP_07015135.1| general secretion pathway protein D [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511383|gb|EFI35285.1| general secretion pathway protein D [Desulfonatronospira
thiodismutans ASO3-1]
Length = 703
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 11/237 (4%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV ++V IAEVR ++G S G S F + G V V
Sbjct: 443 PKQVLIEVIIAEVRLSDATKMGVDWQYI-LSFGDRLSGELRFDPAADALPGAGGVFRVES 501
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTG 303
+ L+A ++ L+ PTL A + A+ G Q + T + S
Sbjct: 502 SRRLKAALYAAVDDAKLQILSTPTLLASDNRPATINIGDQVPFPTSTRQRLDDTDTSEVI 561
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVEL 362
T++ D G++L TP + G + + I EVS V P R A+TT+ +
Sbjct: 562 DTTIQYRDTGIILRVTPKINRHGMVRMEIVQEVSSLTARRVEGITAPVINTRHAETTLAV 621
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
TIV+AGL++ + + G+P +IP++ LF S E TE+ + TP ++
Sbjct: 622 DDQETIVIAGLMEQERSRGYSGVPGFRRIPVVKHLFGTSETRFENTELLVFITPHVI 678
>gi|218894139|ref|YP_002443008.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
[Pseudomonas aeruginosa LESB58]
gi|218774367|emb|CAW30184.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
[Pseudomonas aeruginosa LESB58]
Length = 714
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 35/269 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------------- 219
++++ L+I QV ++ I E K +G +
Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWRGYGKDGNIGIKDEDG 496
Query: 220 ----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
T ++G SKS + + + D + L A+E+
Sbjct: 497 MNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+++P + ++A G + Y+ SSS ++ + + + L TP + RI
Sbjct: 557 EIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ ++ P +P + + + + G TIV+ G+ + + + +P L
Sbjct: 616 VEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLG 675
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
+P LG LFR + + E+ + TP +
Sbjct: 676 DLPYLGRLFRRDTVSDVKNELLVFLTPRI 704
>gi|30248714|ref|NP_840784.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas
europaea ATCC 19718]
gi|30180309|emb|CAD84616.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas
europaea ATCC 19718]
Length = 697
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 68/379 (17%), Positives = 143/379 (37%), Gaps = 23/379 (6%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+ + NK + + ++ + DV + ++++ G A ++
Sbjct: 299 LGVAQNKSDLELLREWIERL--------DVSKLGAQRIFVYNVQNGNAKDLVAPLRQVLT 350
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
+ + +S + G + E +
Sbjct: 351 GEMQATTASGTTVSPTSTPMSTPQMPAAAPSLSAEPSISGSQTNVGRLVAIEENNSLMFY 410
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
+ + K +++L QV ++ +AEV + + G Q + +
Sbjct: 411 GTEDEFRVIQEALKQIDVL----PRQVMIEAFLAEVTLNNNLRYGVQWFFDSGE--NTVT 464
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+A G S+ FS + + VL+AL+ T ++ L+ P ++ ++ Q AS
Sbjct: 465 LSATDVGSVASQFPGFSYIYA-GKANARIVLNALQSKTEVKILSAPKISVLNNQKASLQV 523
Query: 290 GGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
G Q T +S ++ D GV+L P V G + L + EVSE
Sbjct: 524 GDQVPIVTQTSQGTVVSGAPVINTIQMRDTGVILEVIPRVNDNGNVILDVTQEVSEVAQT 583
Query: 343 VN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ D P+ + RK + + G T+ L GL++++ G+PL+ +P++G LF+++
Sbjct: 584 TSSGIDSPTIQRRKIHSVIATRDGFTVALGGLIRENGSAGNSGVPLIKDVPVIGNLFKSN 643
Query: 402 RFNREETEIFIAATPFLVK 420
+ TE+ + P +++
Sbjct: 644 TSDIRRTELVVLLVPHVMR 662
>gi|254244078|ref|ZP_04937400.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
[Pseudomonas aeruginosa 2192]
gi|126197456|gb|EAZ61519.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
[Pseudomonas aeruginosa 2192]
Length = 714
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 35/269 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------------- 219
++++ L+I QV ++ I E K +G +
Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWRGYGKDGNIGIKDEDG 496
Query: 220 ----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
T ++G SKS + + + D + L A+E+
Sbjct: 497 MNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+++P + ++A G + Y+ SSS ++ + + + L TP + RI
Sbjct: 557 EIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ ++ P +P + + + + G TIV+ G+ + + + +P L
Sbjct: 616 VEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLG 675
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
+P LG LFR + + E+ + TP +
Sbjct: 676 DLPYLGRLFRRDTVSDVKNELLVFLTPRI 704
>gi|237809367|ref|YP_002893807.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187]
gi|237501628|gb|ACQ94221.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187]
Length = 702
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 55/274 (20%), Positives = 103/274 (37%), Gaps = 29/274 (10%)
Query: 174 NQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ + +++ + QV ++ + V + +G + +T ++ S S +
Sbjct: 426 VKDTAEVIDHIKDMIKVLDVAVKQVVIEARMVTVTDGVEDALGIRWGVTDINTNGSTSGS 485
Query: 232 -----------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
A + F V + D + L ALE
Sbjct: 486 IEGLDTAATGETPAIDDRLNVNLAAAPSSGTAASIAFQVAKLADGSLLDLELSALENENK 545
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
++ P +T + + A G + Y +SS GAT+++ + L TP + +
Sbjct: 546 AEIISSPRVTTANQKEALIEQGYEIPYNESASS-GATTISFKKAVLSLKVTPQITPDNNV 604
Query: 329 GLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
L + + V N G + + T V + +G T+VL G+ I++ I
Sbjct: 605 ILDLHVTQDDIYQDVNTGNGGTAKALSTQAITTQVLVKNGETLVLGGIYNRSIKKTVNKI 664
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P+L IP +G LFRN+ + E+ I TP +V
Sbjct: 665 PVLGDIPGVGVLFRNTVNTNTKKELLIFVTPKIV 698
>gi|238788960|ref|ZP_04632750.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641]
gi|238722987|gb|EEQ14637.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641]
Length = 376
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 6/233 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
QV L I + R+ L ++G + + S F + + F+V +
Sbjct: 145 QQVQLAAHIVTISRENLHELGVRWGMGEGKPNTSLKMSDFNVNLPLPNSAINAGFNVARI 204
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
R + ALE+ + +A P L Q+AS G Y GAT++
Sbjct: 205 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSGGKKGATTIEFK 263
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
+ + + TP +L G+I L ++ + P + + + ++ T + + G TI
Sbjct: 264 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETI 323
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
VL G+ + Q +P+L IP LG LF+ + E+ I TP L+
Sbjct: 324 VLGGIFQQKSSQGVNKVPILGDIPWLGGLFKQDTQQQNRRELVIFITPRLISA 376
>gi|148546330|ref|YP_001266432.1| general secretion pathway protein D [Pseudomonas putida F1]
gi|148510388|gb|ABQ77248.1| general secretion pathway protein D [Pseudomonas putida F1]
Length = 584
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 64/346 (18%), Positives = 120/346 (34%), Gaps = 34/346 (9%)
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
G + L + + LR + + E + G R + + +
Sbjct: 195 APGNGSTQVIYLRHANAGEVVKVLRGLSQEGAVPAEGAGEA---EGKDRPVMPASGGPGI 251
Query: 164 SETFLSQSGRNQYANSSSK-----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ + S+ ++ L+I QV ++ IAEV +++G Q
Sbjct: 252 RLEYEEGTNAVVMVGPDSELAAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWL 310
Query: 219 ITGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVKGVLDRFSFET 258
G G + G + F+F
Sbjct: 311 FADEKFGAGIVNFGSNGVNIASIAGAAASGDSEALGDLLSTTTGATAGIGHFGGGFNFAM 370
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGV 314
+++AL+ + L+ PTL + AS G + + T S + ++ + GV
Sbjct: 371 LINALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGV 430
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
L P + + L I EVS +A D+ R+ T V + G ++L GL+
Sbjct: 431 KLRIKPQINIDNSVRLDIVQEVSSIADTSSASDV-ITNKREIKTKVMVEDNGLVILGGLI 489
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
D++ + +PLL IP LG LFR+ + + + P +++
Sbjct: 490 SDELSTSNQRVPLLGDIPYLGRLFRSDATRNTKQNLMVFIRPRILR 535
>gi|107101302|ref|ZP_01365220.1| hypothetical protein PaerPA_01002336 [Pseudomonas aeruginosa PACS2]
Length = 776
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 95/508 (18%), Positives = 169/508 (33%), Gaps = 60/508 (11%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
Q+T + + P+ L + ANA +++ I + + I L++ +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206
Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
D++ V+ A+V+ S GK+ V+ + +L + L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262
Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
+L A+S + D L G + + ++
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLRGERGQDGRGSGKRGLLVRADE 322
Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
L+ + ++ L++ Q+ ++ I E+ +I +G Q ++
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381
Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
FA G L F ++ AL R + L+
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441
Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
P+L + Q A G ++T S SS T+V D GV L TP +
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501
Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ L I+ E+S R +TV G IVL GL++DD+ +
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSR 561
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
+PLL IP +G LFR+SR R + + + P +V+ A +
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606
Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
R I + A+ + G I
Sbjct: 607 HGRYRSIQLLRGAAGEPARPLFEDAGAI 634
>gi|71735614|ref|YP_274395.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71556167|gb|AAZ35378.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 778
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ T + + ++V++ L+ QV ++ I EV D Q G Q
Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484
Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
+ G + G G ++ G+ + + +
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
AL+ L+ P L + ++AS G + T +S+ +V + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ L+ P + G + L I EVS + R DT++ L G +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L+D Q E +P LS+IP+LG LFRN + +T + + P++++
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIR 711
>gi|320324664|gb|EFW80738.1| general secretion pathway protein D [Pseudomonas syringae pv.
glycinea str. B076]
Length = 778
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ T + + ++V++ L+ QV ++ I EV D Q G Q
Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484
Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
+ G + G G ++ G+ + + +
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
AL+ L+ P L + ++AS G + T +S+ +V + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ L+ P + G + L I EVS + R DT++ L G +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L+D Q E +P LS+IP+LG LFRN + +T + + P++++
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIR 711
>gi|320328774|gb|EFW84773.1| general secretion pathway protein D [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 778
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ T + + ++V++ L+ QV ++ I EV D Q G Q
Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484
Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
+ G + G G ++ G+ + + +
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
AL+ L+ P L + ++AS G + T +S+ +V + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ L+ P + G + L I EVS + R DT++ L G +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L+D Q E +P LS+IP+LG LFRN + +T + + P++++
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIR 711
>gi|254447504|ref|ZP_05060970.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium
HTCC5015]
gi|198262847|gb|EDY87126.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium
HTCC5015]
Length = 721
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 63/296 (21%), Positives = 105/296 (35%), Gaps = 32/296 (10%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+ A + T + ++ L+I + QV ++ I D KQ+G
Sbjct: 422 SERGTATVDARTNTLMVTDTAVVMEQIRSMLQRLDIPVK-QVLIESRIVIASDDFDKQLG 480
Query: 215 FQHSIT---------GSSSGPSKSFA------------------ADFGGKFVSEGGDFSV 247
+ + G+ G S +F +F S G F+
Sbjct: 481 SRFGVNRIDPLPVGEGAVFGGSDTFNLQGRQSGGDLNINSRPMNFNFPANAGSSTGQFAF 540
Query: 248 KGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ E L AL+ ++ P + + + A G + Y +SS T
Sbjct: 541 ALPTSSGNLLELELSALQAEGKGEIISTPRVITANQKEAFIEQGVEIPYLEAASSGAVT- 599
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELPS 364
V + L TP + RI L + + G +PS R+ +T V + +
Sbjct: 600 VAFKKAVLSLTATPQITPDDRIILDLNVKKDNVGEIFGEGEIQVPSIDTREVETQVLVKN 659
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G T+VL G+ + + IP L IP +G LFR + EI I TP +V+
Sbjct: 660 GETVVLGGIFEHETLDSVTKIPFLGDIPGIGRLFRREIKQNSKREILIFVTPKIVR 715
>gi|197104120|ref|YP_002129497.1| type II secretory pathway protein D [Phenylobacterium zucineum
HLK1]
gi|196477540|gb|ACG77068.1| type II secretory pathway protein D [Phenylobacterium zucineum
HLK1]
Length = 686
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 81/470 (17%), Positives = 158/470 (33%), Gaps = 70/470 (14%)
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGK--NVGQANVILIGHDGKQMLNLDILI--- 116
+ D + + +VV S ++ L G+ V ++ D + D+ +
Sbjct: 218 LKAPGADPAARNGVVSIIVVDSSNSIILRGEPDAVRPLLALVADLDRRAESAGDVRVVQL 277
Query: 117 -ERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
+ L L++ + + + T + +A +
Sbjct: 278 QHANAEQLVPVLQQLVGQTPSPSAGPAATRRGEAPASPEPAATPTAAGQARANIARYPGA 337
Query: 171 SGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
+ A+ +++ V+ L++ QV ++ + EV + K++G Q ++ G +
Sbjct: 338 NAIVIAADPETQRMLAEVIRQLDVR-RRQVLVEAIVVEVSDEAAKRLGVQFALAGINGSA 396
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------------- 255
A + +
Sbjct: 397 IPFTATSYSNSAPNLPAVIGAVAAEKNLPDDDATKALLRDAAVRSLLAANGALIGGGGQI 456
Query: 256 -----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGAT 305
F V++A++ TA L+ P++ + Q A+ G + T S
Sbjct: 457 GDDALFGLVINAVKSDTASNLLSTPSVMTLDNQPATILVGQEVPITTGESLGANNENPFR 516
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPS 364
++ + GV L TP + + G I L ++ EVS ++A R+ +TTV +
Sbjct: 517 TIARQNVGVQLEVTPQINAGGTITLFLRQEVSAVAGPISANFTELVLNKREIETTVNVDD 576
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVA 423
G IVL GLL D + E P+L IP LGALFR + + +T + + P +V
Sbjct: 577 GEIIVLGGLLSQDERASVEKTPVLGDIPGLGALFRGTNKAKTKTNLMVFIRPKIVGDAAG 636
Query: 424 MRDLSRP----------DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
R ++ P + + +A + + P A G
Sbjct: 637 ARAVTGPKYEYIRGQQTAADPRRQSELEALVREYL-RAEPPTSAPLPAGP 685
>gi|158521058|ref|YP_001528928.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3]
gi|158509884|gb|ABW66851.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3]
Length = 799
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 67/350 (19%), Positives = 130/350 (37%), Gaps = 34/350 (9%)
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
GK+ +++ L D L L + + + + + +
Sbjct: 322 QQGKERIHVYYLKNADAEELAKVL-QMLPEKQGDATAEGKKL-----APVLSKAINITAD 375
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------ 217
+ T + K+++ L+I V ++ IAEV + ++G +
Sbjct: 376 ASTNSLIIMAERDDYLVLKEIIEKLDIP-RSMVYIECLIAEVNINKDFELGAEWLVGGKG 434
Query: 218 ----------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
S TG ++ + G V + V G ++ + V+
Sbjct: 435 SYDDKDGGYAVGFGGGSDTGYANVARMAMGGLPSGFSVGAMAESIVVGGIEYPNLAAVVR 494
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLH 317
A ++ ++ L+ P + Q A+ T G Y T +T ++ D G+ L
Sbjct: 495 AFKKDKDVQILSTPQIMTTDNQEATITVGKNIPYLTKIGTTSSEETYSNYEYKDVGISLK 554
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
P + I L I+ E+++ + D P+ R T V + TIV+ GL+ D
Sbjct: 555 IKPQINENRLIRLDIEQELTKLDQLTTVSLDRPATLKRGITTNVIVHDEHTIVIGGLIDD 614
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+ +++ +P L IP LG LF+ + E+T + + TP ++K D
Sbjct: 615 SMSRVEYKVPCLGDIPFLGWLFKGLSRSSEKTNLLVFLTPHVIKTAREAD 664
>gi|226946542|ref|YP_002801615.1| secretion system protein [Azotobacter vinelandii DJ]
gi|226721469|gb|ACO80640.1| Bacterial secretion system protein [Azotobacter vinelandii DJ]
Length = 717
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 52/361 (14%), Positives = 125/361 (34%), Gaps = 36/361 (9%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ +G ++ + ++ ++ IA L R + + + ++ +
Sbjct: 351 RKIGNVLLVAPADEIAARERQELEAQQQIAELAPLRRELLQVNYAKATDIA-KLFQSVTS 409
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ QR + + Q + + +++ L++ QV ++ I E D
Sbjct: 410 SDEVEEQRGSITVDERTNNIIAYQTQDRLDELRRIVAQLDVPVR-QVMIEARIVEANVDY 468
Query: 210 LKQIGFQHSI-------------------TGSSSGPSKSFAADFGG------------KF 238
K +G + G P +F
Sbjct: 469 DKSLGVRWGGSFVNDQWSLYGKDGAQSVDDGQVFLPGTGQVGNFTLEDGMAPVPFVDMGV 528
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ + + D + L A+E+ +++P + ++A +G + Y+
Sbjct: 529 ANSTSGLGIGFISDHLILDLQLSAMEKTGNGEVISQPKVLTSDKETAKILTGEEIPYQEA 588
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
SSS ++ + + + L TP + RI + ++ + +P + +
Sbjct: 589 SSSGATST-SFKEAALSLEVTPQITPDNRIIMEVKVTKDQADFAKALNGVPPINKNEVNA 647
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V + G TIV+ G+ + + + +P L +P +G LFR ++E+ + TP +
Sbjct: 648 KVLIGDGETIVIGGVFSNIQAKSVDKVPFLGDLPFIGRLFRRDVVADSKSELLVFLTPRI 707
Query: 419 V 419
+
Sbjct: 708 L 708
>gi|330502644|ref|YP_004379513.1| general secretion pathway protein D [Pseudomonas mendocina NK-01]
gi|328916930|gb|AEB57761.1| general secretion pathway protein D [Pseudomonas mendocina NK-01]
Length = 647
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 82/451 (18%), Positives = 149/451 (33%), Gaps = 49/451 (10%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
P L + +NA +I+ I + + + L++ V V +
Sbjct: 154 PLVPQYGHLAAVTSSNALIISDRSANIARIEDLMRQLDQSGAQDFSV----VTLQHAWVM 209
Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL--------- 127
D V + K V+ + +L +A L +L
Sbjct: 210 DAAEVLNASIARGQAKGTSATQVVADARTNRLILLGPPQARSKLADLARSLDSPSSRSAN 269
Query: 128 ----RRFIADSNIRVEMVS----DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
R D+ E + G T + S + E+ + +
Sbjct: 270 TRVIRLRHNDAKSLAETLGEISEGLKTQEGSEATGRQSNILIRADESLNALVLLAEPDLV 329
Query: 180 SS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
++ + ++ L++ QV ++ I EV DI +G Q ++ G
Sbjct: 330 ATLEDIVRQLDVP-RAQVMVEAAIVEVSGDITDALGVQWAVDARGRTGGLGGVNFGGTGL 388
Query: 239 V---------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ + F ++ AL + L+ P+L + Q
Sbjct: 389 SVGTVLQILQSGEIPENTTLPDGAIIGVGSDRFGALITALSANSKSNLLSTPSLLTLDNQ 448
Query: 284 SASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
A G ++T S + T++ D GV L TP + + L I+ E+
Sbjct: 449 KAEILVGQNVPFQTGSYTTDASGAGNPFTTIERKDIGVTLKVTPHINEGATLRLEIEQEI 508
Query: 337 SEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
S R +T+ G IVL GL++DD+ Q +PLL IP+
Sbjct: 509 SSIAPSTGLNAQAVDLVTNKRSIKSTILADDGQVIVLGGLIQDDVTQATSKVPLLGDIPL 568
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424
LG LFR++R + + + + P +V+ A
Sbjct: 569 LGGLFRSTRDSHIKRNLMVFLRPTVVRDGAG 599
>gi|260767306|ref|ZP_05876246.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972]
gi|260617713|gb|EEX42892.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972]
gi|315181306|gb|ADT88220.1| MSHA biogenesis protein MshL [Vibrio furnissii NCTC 11218]
Length = 547
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 65/308 (21%), Positives = 114/308 (37%), Gaps = 31/308 (10%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
++E ++ G +++ + +A L+ R ++ +N+ + QV
Sbjct: 222 QLEKAVSRLIGSGRGQSVVVTPQAGVLTLRAYPDEVREV------RQFLNVSQQRMQRQV 275
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG------PSKSFAADFGGKFVSEGGDFSVKGV 250
L+ I EV Q G S +G S + G +
Sbjct: 276 ILEAKILEVTLTDGYQQGINWSNMSFGNGKVVIDRIGSSASTLPGLDAIGTLLSGQTNIT 335
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--------- 301
+ SF +VL + + L+ P +TA + Q A G Y T SS
Sbjct: 336 VSDGSFSSVLSFMATQGDLNVLSSPRVTAANNQKAVIKVGSDEYYVTDLSSVVGSGDNTQ 395
Query: 302 -TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMP--SY 351
+T G+ L TP + G + L + V E + +P
Sbjct: 396 AAPDVELTPFFSGISLDVTPQIDDKGNVLLHVHPSVIEVTQQDKEITYNDSTFTLPLARS 455
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+R++D+ + +G +V+ GL+K + +P L IP LG LFR++ E+TE+
Sbjct: 456 SIRESDSVIRAQNGDVVVIGGLMKTNTSNKVSKVPFLGDIPALGHLFRSTTELTEKTELV 515
Query: 412 IAATPFLV 419
I P +V
Sbjct: 516 ILLKPTVV 523
>gi|89075297|ref|ZP_01161724.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34]
gi|89048978|gb|EAR54546.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34]
Length = 541
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 67/299 (22%), Positives = 113/299 (37%), Gaps = 26/299 (8%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
V+ GM+ + V +S + + + + QV L+ I EV
Sbjct: 220 VVSGMIGSGDGRNVMVSPQAGLISVRAFPNELREVKE-FLGMSQRRLKRQVVLEAKIMEV 278
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSVKGVLDRFSFETVL 260
D Q G S S + A GG +SE L +F+ V+
Sbjct: 279 TLDDSYQQGINWSYLTKSGNGITTGTASIVEALPGGNAISELLGGQTNITLSDGNFKAVM 338
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSVTTH 310
L + L+ P +TA + Q A GG + T SS+ S+T
Sbjct: 339 SFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNNVSPDVSLTPF 398
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS----------YRVRKADTTV 360
G+ L TP + G + L + V + ++ + +R++D+ +
Sbjct: 399 FSGISLDVTPQIDDQGGVLLHVHPAVIDVQNEQKTIEVGTEKPMVLPLAKSTIRESDSII 458
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G +V+ GL+K I +PLL IP +G LFR+ +++TE+ I P +V
Sbjct: 459 HARTGDVVVIGGLMKSSINDQVSKVPLLGDIPWVGNLFRHINKVKKKTELVILLKPTVV 517
>gi|15600233|ref|NP_253727.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
[Pseudomonas aeruginosa PAO1]
gi|12230952|sp|P34750|PILQ_PSEAE RecName: Full=Fimbrial assembly protein pilQ; Flags: Precursor
gi|9951330|gb|AAG08425.1|AE004917_4 Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
[Pseudomonas aeruginosa PAO1]
Length = 714
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 47/269 (17%), Positives = 96/269 (35%), Gaps = 35/269 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228
++++ L+I QV ++ I E K +G + S
Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKDGNIGIKDEDG 496
Query: 229 ----------SFAADFGGKFVSE---------GGDFSVKGVLDRFSFETVLHALERATAI 269
+F K S + + D + L A+E+
Sbjct: 497 MNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+++P + ++A G + Y+ SSS ++ + + + L TP + RI
Sbjct: 557 EIVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ ++ P +P + + + + G TIV+ G+ ++ + E +P L
Sbjct: 616 VEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLG 675
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
++P LG LFR + E+ + TP +
Sbjct: 676 ELPYLGRLFRRDTVTDRKNELLVFLTPRI 704
>gi|186477543|ref|YP_001859013.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815]
gi|184194002|gb|ACC71967.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815]
Length = 523
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 70/432 (16%), Positives = 144/432 (33%), Gaps = 47/432 (10%)
Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
P + A + + + + I++ + + V A
Sbjct: 101 GPPVLLAPAARLSESASASVPADRPITLHFQRGELGAVLGAFAK-FTGLNIVASDKARGA 159
Query: 85 RTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
T++L A L+ +G M +++ + L R+ E +
Sbjct: 160 VTLHLNSVPWRTAFDTLLDVNGLAMEQRGNVIWVAPQSELAARERQRF-------ETHAR 212
Query: 144 TVVLHGMVRTIQD-----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-------- 190
L + + ++ +L +Q ++ + + NLL +
Sbjct: 213 AAELEPLASRTFELHYAHAEELRKLLTASGNQRVLSKRGAAMADPRTNLLFVTDLAARLA 272
Query: 191 ----------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------SGPSK 228
QV ++ I E + + +G + S+ G++ G
Sbjct: 273 QIAELVASLDRPTRQVLIEARIVEAEKGFSRNLGVKLSMIGTNEDGKATGLVGGKDGAIL 332
Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+A F + ++ L ALE + ++ P + A
Sbjct: 333 DLSARPVSGFDAATMGLTLFAAQATRLVNIELSALEAEGRGQIVSSPRVVTADRMKAVVE 392
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 393 QGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVAKDSVGEQTASG 449
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P+ + T VE+ GGT+ + G+ + D + +PLL KIP+LG FR+ +
Sbjct: 450 PAINTKHVQTRVEVEDGGTVSIGGIYETDGRDDVTRVPLLGKIPVLGVFFRHRAHRDLRS 509
Query: 409 EIFIAATPFLVK 420
E+ + TP +V+
Sbjct: 510 ELVVFITPRVVQ 521
>gi|167626079|ref|YP_001676373.1| general secretion pathway protein D [Shewanella halifaxensis
HAW-EB4]
gi|167356101|gb|ABZ78714.1| general secretion pathway protein D [Shewanella halifaxensis
HAW-EB4]
Length = 720
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 60/279 (21%), Positives = 105/279 (37%), Gaps = 43/279 (15%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
+ V+N L+I QV ++ I EV G Q + + G
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 394
Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ G + + F ++ A+ T
Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDT 454
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPT 321
LA P++T + Q ASF G + + +S +V + GV L P
Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
V + L I+ EVS ++ R+ TTV SG +VL GL+K+++Q+
Sbjct: 515 VNEGNAVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLIKEEVQES 572
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ +P L IPI+G LF++S +++T + + P +++
Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKTNLMVFIKPTIIR 611
>gi|256823530|ref|YP_003147493.1| general secretion pathway protein D [Kangiella koreensis DSM 16069]
gi|256797069|gb|ACV27725.1| general secretion pathway protein D [Kangiella koreensis DSM 16069]
Length = 708
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 69/296 (23%), Positives = 112/296 (37%), Gaps = 60/296 (20%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
V+ L+I QV ++ I E+ + K++G Q + S + +F
Sbjct: 350 DSVIRALDIR-RKQVHVEAIIVEISDNKAKELGIQWLFSPEGSNTTPGGVVNFTNTGPGI 408
Query: 242 GGDFSVKGVL-------------------------------------------------- 251
G +
Sbjct: 409 GQVAAGAISARGTEEEVFTRDPETGEITGTETRRVGGDNGAALAEVLGGMQGLGLGVAKI 468
Query: 252 --DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGA 304
D FS+ + ALE T TL+ P++T + A F SG + T ++S
Sbjct: 469 RPDGFSWGAFIRALEGVTDSNTLSRPSVTTLDNVEAIFKSGQEIPIITGSTLGDNNSNPF 528
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+V D GV+L TP + + L I+ EVS N + R+ T+V +P
Sbjct: 529 QNVERKDVGVMLKLTPQINEGNYVRLDIEQEVSSIAGSTNVDVV--TNKREVKTSVLVPD 586
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
GG +VL GL+ DDIQQ + +P+L IP+LG F++ R + + + I P ++K
Sbjct: 587 GGMVVLGGLIDDDIQQSSQKVPILGDIPVLGHAFKSQRTQKIKRNLMIFIHPTVLK 642
>gi|319786312|ref|YP_004145787.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1]
gi|317464824|gb|ADV26556.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1]
Length = 619
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 50/257 (19%), Positives = 97/257 (37%), Gaps = 27/257 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------- 240
DQV ++ I + +G + I G SG + + + S
Sbjct: 358 RPVDQVLIESRIVIASDSFARDLGARFGIQGRRSGNNTAAIGGSLNQTGSIVNGGVGVPG 417
Query: 241 -----------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G + + F+ + L AL++ L+ P + + + A
Sbjct: 418 GLNVNLPATAENAGALAYTLLGANFALDLELSALQQEGRGEVLSNPRVVTSNQREAVIRQ 477
Query: 290 GGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GV 343
G + Y T++ +V + + L TPT+ S R+ + + E +
Sbjct: 478 GREVGYVTLTGGGNQAFATPNVQFKEVVLELKVTPTITSDDRVFMAVNVLKDEVLQYIDT 537
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+ G +P R+ +T V + G T+V+ G+ + +P L +P LG LF+
Sbjct: 538 SIGQVPEIATREINTAVLVDDGQTVVIGGVYEFTDSNSVSKVPFLGDVPFLGNLFKKKSR 597
Query: 404 NREETEIFIAATPFLVK 420
+E+ E+ I TP +++
Sbjct: 598 LKEKAELLIFLTPKVMR 614
>gi|157377398|ref|YP_001475998.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3]
gi|157319772|gb|ABV38870.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3]
Length = 682
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 54/281 (19%), Positives = 107/281 (38%), Gaps = 25/281 (8%)
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
++ + + + + V L+ + QV ++ + V+ D+ +++G + +T
Sbjct: 399 VAVDERTNTLLVKDTEDILENVHRLIEVLDIPIRQVLIESRMVTVKDDVSEELGIRWGVT 458
Query: 221 GSSSGPSKS--------------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
S + + F V + D + L
Sbjct: 459 DQQGDKGTSGSLEGAESISNGIVPALVDRLNVNLPASTGAARVAFHVAKLADGTVLDMEL 518
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
ALE+ +A P + S Q A++ G + +SS+GA +++ + L TP
Sbjct: 519 SALEKEDKGEIIASPRIMT-SNQKAAYIEQGVEIPYLEASSSGAATISFKKAVLSLRVTP 577
Query: 321 TVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
+ R+ L ++ V+ G S ++ T V + G TIVL G+ + +
Sbjct: 578 QITPDNRVILDLEITQDSQGKVVATPLGSAVSIDTQRIGTQVLVDHGETIVLGGIYQQQL 637
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P+L IP +G LFR++ E+ I TP ++
Sbjct: 638 INRVSKVPVLGDIPFVGFLFRSTTDENNRQELLIFVTPKII 678
>gi|107104140|ref|ZP_01368058.1| hypothetical protein PaerPA_01005213 [Pseudomonas aeruginosa PACS2]
Length = 714
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 45/269 (16%), Positives = 93/269 (34%), Gaps = 35/269 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
++++ L+I QV ++ I E K +G + S G
Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKDGNIGIKDEDG 496
Query: 237 ---------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
+ + D + L A+E+
Sbjct: 497 MNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+++P + ++A G + Y+ SSS ++ + + + L TP + RI
Sbjct: 557 EIVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ ++ P +P + + + + G TIV+ G+ ++ + E +P L
Sbjct: 616 VEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLG 675
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
++P LG LFR + E+ + TP +
Sbjct: 676 ELPYLGRLFRRDTVTDRKNELLVFLTPRI 704
>gi|163749924|ref|ZP_02157169.1| general secretion pathway protein D [Shewanella benthica KT99]
gi|161330438|gb|EDQ01417.1| general secretion pathway protein D [Shewanella benthica KT99]
Length = 711
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 59/305 (19%), Positives = 110/305 (36%), Gaps = 47/305 (15%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ +ET + V+N L+I QV ++ I EV G Q +
Sbjct: 313 IMAHAETNALVITAQPDQMRTIDSVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGIQWAT 371
Query: 220 TGSSSGPSKSFAADFGGKFV--------------------------------------SE 241
+ G +
Sbjct: 372 AAGGMTQFNNLGPTIGEVGAGVWLAQDQKASQTCTGSGDTQTCTKNPDTPGDITILAQAL 431
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL------Y 295
G + + F ++ A+ T LA P++T + Q A+F G +
Sbjct: 432 GKINGMAWGVAMGDFGALIQAISSDTRSNILATPSITTLDNQEATFIVGDEVPILTGSQS 491
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
+ +S T+V + GV L P + + L I+ EVS + ++ R+
Sbjct: 492 SSNGNSNPFTTVERREVGVKLKVIPQINEGTSVKLTIEQEVSGINGKTSVD--VTFATRR 549
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
TTV + SG +VL GL+ +++Q+ + +P L +PI+G LFR+S ++++ + I
Sbjct: 550 LTTTVMVDSGQIVVLGGLISEEVQESVQKVPFLGDLPIIGHLFRSSSSSKKKKNLMIFIK 609
Query: 416 PFLVK 420
+++
Sbjct: 610 ATIIR 614
>gi|121593158|ref|YP_985054.1| type IV pilus secretin PilQ [Acidovorax sp. JS42]
gi|120605238|gb|ABM40978.1| type IV pilus secretin PilQ [Acidovorax sp. JS42]
Length = 696
Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 91/246 (36%), Gaps = 23/246 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT--------------------GSSSGPSKSFAAD 233
QV ++ I E R + +G + GS P S A
Sbjct: 447 RQVMIEARIVEARDTFGRSLGVRLGGGSRTGGSAVGGTYDNVAGPTGGSGMSPFVSLPAS 506
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
G S+ L A+E + ++ P L A G ++
Sbjct: 507 LSGVSTVGSFALSIFNSNASRFLSLELSAMEADGQGKIVSSPRLITADQTKALIEQGTEY 566
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
Y + GAT++ + L TP + G I L + +V++ G +
Sbjct: 567 PYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGNIILDL--DVNKDSRGETTTQGVAIDT 623
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
+ T V + +GGT+V+ G+ + + + IP+L +P++G LF+N + E+ +
Sbjct: 624 KHVKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGNLFKNRTKESTKREMLVF 683
Query: 414 ATPFLV 419
TP ++
Sbjct: 684 ITPKVI 689
>gi|330446773|ref|ZP_08310424.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328490964|dbj|GAA04921.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 539
Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats.
Identities = 69/309 (22%), Positives = 121/309 (39%), Gaps = 31/309 (10%)
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
+++E V ++ G R++ S +A +S R K+ + + + Q
Sbjct: 213 VQLEKVVSGMIGSGDGRSVMVSPQAGLISVRAFPNELREV------KEFLGMSQKRLKRQ 266
Query: 196 VTLKVTIAEVRRDILKQIGFQHSI-----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
V L+ I EV D Q G S G + G + GG +S+
Sbjct: 267 VVLEAKIMEVTLDDSYQQGINWSYLTKSGNGITMGTAAIVDGLPGGNAISDLLGGQTNIT 326
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302
+ +F V+ L + L+ P +TA + Q A GG + T SS+
Sbjct: 327 ISDGNFNAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNT 386
Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---------- 350
S+T G+ L TP + G + L + V + ++ +
Sbjct: 387 VSPDVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNEEKKIEVGTAKPMVLPLAK 446
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R++D+ + +G +V+ GL+K I +PLL IP +G LFR +++TE+
Sbjct: 447 STIRESDSIIHARTGDVVVIGGLMKSTINDQVSKVPLLGDIPGVGNLFRQINKVKKKTEL 506
Query: 411 FIAATPFLV 419
I P +V
Sbjct: 507 VILLKPTVV 515
>gi|170729053|ref|YP_001763079.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908]
gi|169814400|gb|ACA88984.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908]
Length = 714
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 59/283 (20%), Positives = 104/283 (36%), Gaps = 47/283 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
+ V+N L+I QV ++ I EV G Q + + G
Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVSEGDDVGFGVQWATAAGGGTQFNNLGPTIGEIGAGV 396
Query: 236 ----------------------GKFVSEGGDFSVKGVLDR----------FSFETVLHAL 263
+ G + L + F ++ A+
Sbjct: 397 WNARDQKASQTCSGSGDNQTCTDNPDTPGDITLLAQALGKVNGMAWGVAMGDFGALIQAV 456
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVTTHDYGVVLH 317
T LA P++T + Q ASF G + T + S +V + GV L
Sbjct: 457 SSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGAQNSSNGNSNPFQTVERKEVGVKLK 516
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
P + + L I+ EVS ++ R+ TTV SG +VL GL+ ++
Sbjct: 517 VVPQINEGSSVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINEE 574
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+Q+ + +P L IPI+G LF++S +++ + + P +++
Sbjct: 575 VQESVQKVPFLGDIPIIGHLFKSSSSGKKKKNLMVFIKPTIIR 617
>gi|330881978|gb|EGH16127.1| general secretion pathway protein D [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 334
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 61/263 (23%), Positives = 105/263 (39%), Gaps = 26/263 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+V++ L+ QV ++ I EV D Q G Q + G + G
Sbjct: 6 EVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQTGNLNGSGGFGGVNLGGSGLNTGG 64
Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
G ++ G+ + + + AL+ L+ P L + ++A
Sbjct: 65 STSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAA 124
Query: 286 SFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
S G + T +S+ +V + G+ L+ P + G + L I EVS
Sbjct: 125 SIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVS 184
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ R DT++ L G +VL GLL+D Q E +P LS+IP+LG L
Sbjct: 185 NVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVL 244
Query: 398 FRNSRFNREETEIFIAATPFLVK 420
FRN + +T + + P++++
Sbjct: 245 FRNEARSTSKTNLMVFLRPYIIR 267
>gi|114797223|ref|YP_760566.1| general secretion pathway protein D [Hyphomonas neptunium ATCC
15444]
gi|114737397|gb|ABI75522.1| general secretion pathway protein D [Hyphomonas neptunium ATCC
15444]
Length = 653
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 80/480 (16%), Positives = 153/480 (31%), Gaps = 59/480 (12%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
L R + + + ++ N V+ + + ++I L++ +
Sbjct: 130 KLDRANAMEAAQMIKPLLDAQGQVVANAGTNTLVVVDYASNLERVRRIIETLDRDQTVTE 189
Query: 63 PVDVQDV-LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
V + +V V T + P G+ + + + +L D
Sbjct: 190 TVPLTNVPAVEIETVLTRLQGDPSAQ--QGQAPSRLSAVASLTSNSIILRGDATSVERAK 247
Query: 122 HLEMTLRRFIADSN-IRVEMVS-----DTVVLHGMVRTIQDSQRAVELSETFLSQSG--- 172
+ + L + +RV ++ + V + V QRA +
Sbjct: 248 RVALELDATNPQRDHVRVITLNYADAEEVVPILERVANSMAMQRAPSETAPVAQTIAHHG 307
Query: 173 --------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
N + ++V+ L++ QV ++ I E+ D +++G Q + G+
Sbjct: 308 PTNSLIISANPETILAMERVVTALDVRRP-QVMVEAIIVEMSDDAARELGLQFLLAGTGG 366
Query: 225 GPSKSFA--------------------------------ADFGGKFVSEGGDFSVKGVLD 252
+ A S G G
Sbjct: 367 DVPFASTNFSRAAPNLLALTGALVTDAFEDPAAENPFREAAISSLTGSSGLTLGFGGTSG 426
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSV 307
F +L+A+E TA R L+ P ++ +++ G + T +S +V
Sbjct: 427 DNLFGVILNAVEDDTASRILSTPFGMTLNNATSALIVGQEIPVTTGQVLGEANSNPFRTV 486
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGG 366
D G+ L TP + + L I+ EVS V R+ +V G
Sbjct: 487 ERKDIGIQLEVTPRIGENDTVRLDIRQEVSSVFGSVGTVTPDLILDKREIRASVLADDGE 546
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
IVL GL++ +P+L IP +G LFR+ + + P +V+ A
Sbjct: 547 IIVLGGLVEQTDTLRDTKVPVLGDIPGVGRLFRSEGKAATRRNLMVFIRPTIVRNKADAQ 606
>gi|220932698|ref|YP_002509606.1| type II and III secretion system protein [Halothermothrix orenii H
168]
gi|219994008|gb|ACL70611.1| type II and III secretion system protein [Halothermothrix orenii H
168]
Length = 602
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 70/296 (23%), Positives = 115/296 (38%), Gaps = 21/296 (7%)
Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
I I VE V + + L E Q + K+ + +
Sbjct: 302 ELIPMEYIEVEKVPQLL------PNNFPAANVKVLKEKNALLVTGTQSDINKLKEYIKQI 355
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
+ V ++ + E+ R+ + + + F + G + K
Sbjct: 356 DTRIPLIV-VEAVVVELTRNRQENPVIKLGMEYDGEEE---------LLFDTSMGKLTYK 405
Query: 249 GVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGA 304
VLD F + AL + A P +T ++GQ A G Y +T
Sbjct: 406 SVLDLPDDFYLKIEALVTEGLLTVKARPNITTLNGQQAMIDVGTVQYYKVKQTDGEGNEE 465
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
T + + GV L TP V S G I L+++ +VS A P R+ DTTV +
Sbjct: 466 TQYQSINAGVSLTVTPWVSSSGEITLKLRPQVSNI-GAAAAEGPPQVSRREVDTTVRVKD 524
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G T+V+ GL++D +P L+ IP++G LF++ N +TE+ I TP ++K
Sbjct: 525 GQTVVIGGLIQDVGTNTTSKVPFLANIPLIGKLFKSRNNNVNQTELIIFITPRVLK 580
>gi|120554944|ref|YP_959295.1| general secretion pathway protein D [Marinobacter aquaeolei VT8]
gi|120324793|gb|ABM19108.1| general secretion pathway protein D [Marinobacter aquaeolei VT8]
Length = 649
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 84/465 (18%), Positives = 168/465 (36%), Gaps = 63/465 (13%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVL 70
+ L L + ANA +++ I + ++I L+ +V V +Q+
Sbjct: 141 LVPILRPLVAKYGHLAGVAAANALIVSDHASNIARIEQIVRELDSPSKYEVEVIQLQEAW 200
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDILIERDIAHLEM 125
V D + +P + G+ G+ +V + +L D + L +
Sbjct: 201 VGD-MVTLLQELAPEEL---GRAGGENAARKYSVTADERSNRLILRGDETFRDKMRGLIL 256
Query: 126 TLRRFIADSNIR-------VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------ 172
L + A + + T +L G++ + A S G
Sbjct: 257 QLDQPSASGGTTKVIRLRHADAKTLTEILKGVMGEVVKEGSAGGSSGGSAGNPGSSFSVF 316
Query: 173 -----------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
+ +++++ L++ QV ++ I E+ ++ Q+G Q +
Sbjct: 317 ADEGLNALVVRGDPSLMQEAEQIVAQLDVR-RAQVMIEAAIVEISDELGDQLGVQLAAGD 375
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--------------------RFSFETVLH 261
S+G + G + + ++ ++ ++
Sbjct: 376 ESAGSFPVLGTNLTSGQGMVGLNSVIGALVGDTIPQLAGGLTVGAGQRDEDGVTWGLLIQ 435
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGV 314
AL ++A L+ P++ + Q + G ++T S+ T++ D G+
Sbjct: 436 ALSSSSAANLLSTPSIITLDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERRDVGL 495
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
L TPT+ + G + L ++ + V+ R+ TTV G T+VL GL
Sbjct: 496 SLKVTPTISADGLVRLVVEQTTEDISTTSVDGASDLITNKREIKTTVLADDGETVVLGGL 555
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+KDD Q K +PLL IP+LG LF + R + + + P +
Sbjct: 556 IKDDYQVSKSKVPLLGDIPVLGRLFSSESETRVKRNLLVFLRPTI 600
>gi|313110575|ref|ZP_07796459.1| secretion protein XqhA [Pseudomonas aeruginosa 39016]
gi|310882961|gb|EFQ41555.1| secretion protein XqhA [Pseudomonas aeruginosa 39016]
Length = 776
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 95/508 (18%), Positives = 169/508 (33%), Gaps = 60/508 (11%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
Q+T + + P+ L + ANA +++ I + + I L++ +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206
Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
D++ V+ A+V+ S GK+ V+ + +L + L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262
Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
+L A+S + D L G + + ++
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLHGERGQDGRGSGKRGLLVRADE 322
Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
L+ + ++ L++ Q+ ++ I E+ +I +G Q ++
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381
Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
FA G L F ++ AL R + L+
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441
Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
P+L + Q A G ++T S SS T+V D GV L TP +
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501
Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ L I+ E+S R +TV G IVL GL++DD+ +
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSR 561
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
+PLL IP +G LFR+SR R + + + P +V+ A +
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606
Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
R I + A+ + G I
Sbjct: 607 HGRYRSIQLLRGAAGEPVRPLFEDAGAI 634
>gi|145300802|ref|YP_001143643.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp.
salmonicida A449]
gi|88866576|gb|ABD57345.1| MshL [Aeromonas salmonicida subsp. salmonicida A449]
gi|142853574|gb|ABO91895.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 556
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 63/273 (23%), Positives = 105/273 (38%), Gaps = 33/273 (12%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------EGG 243
+ QV L+ I EV + + G S +S +K
Sbjct: 274 KRQVVLEARILEVALNEGYEQGVDWSGLSASWDGNKGITGGSSLSPTQLPTTPNQIFTAL 333
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST- 302
+ +F ++ L+ + TL+ P +TA + Q A G + T +S+T
Sbjct: 334 GGGAGFKISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYFVTKASTTI 393
Query: 303 -----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
+T G+ L TP + G++ L I V + DM +
Sbjct: 394 TSNSSGVSDRTPNVELTPFFSGISLDVTPQIDEEGKVLLHIHPSVIDTEEQNKVIDMGTS 453
Query: 352 -----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+R++DT V+ +G IV+ GL+K D Q++ +PLL IP +G F N
Sbjct: 454 GGRLELPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPWIGEAFTN 513
Query: 401 SRFNREETEIFIAATPFLV-KPVAMRDLSRPDD 432
R + ++ E+ I P +V K +L R D
Sbjct: 514 RRESTKKVELVILLKPTVVEKDTWQNELKRSAD 546
>gi|71280237|ref|YP_271224.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H]
gi|71145977|gb|AAZ26450.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H]
Length = 609
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 59/300 (19%), Positives = 110/300 (36%), Gaps = 32/300 (10%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
V G R++ S +A ++ L Q + KK + QV ++ I EV
Sbjct: 249 VGTGEGRSVIVSPQAGLVTVRALPQELT------AVKKFITATESHLHRQVIIEAKIMEV 302
Query: 206 RRDILKQIGFQHSITGSSSGP-------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
+ Q G + + G + + + + + F
Sbjct: 303 TLNDDFQQGIKWNKVLDQVGSADIIYSTTGNVVGNVISNTIGGVNSINFSKQTSGSDFSG 362
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----------SSSTGATSVT 308
V+ L+ ++ L+ P +TA + Q A G + T +++T +T
Sbjct: 363 VIELLQTQGNVQVLSSPRITATNNQKAVIKVGEDEYFVTEVSSTTTTGTSTTTTPEVELT 422
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMPSYRVRKADTT 359
G+ L TP + G + L + V+ + + VR++DT
Sbjct: 423 PFFSGIALDVTPQISKDGSVILHVHPSVTITEEQSKTIKIGDTTLVLPLAQSSVRESDTI 482
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ SG +V+ GL++ ++ P+L IP LG LF+N ++ E+ I P +V
Sbjct: 483 IRANSGEVVVIGGLIETYNIDIESKTPILGDIPYLGELFKNKSQKSQKRELVIMLKPIVV 542
>gi|331010889|gb|EGH90945.1| general secretion pathway protein D [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 778
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ T + + ++V++ L+ QV ++ I EV D Q G Q
Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484
Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
+ G + G G ++ G+ + + +
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 544
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
AL+ L+ P L + ++AS G + T +S+ +V + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ L+ P + G + L I EVS + R DT++ L G +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L+D Q E +P LS+IP+LG LFRN + +T + + P++++
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 711
>gi|262373636|ref|ZP_06066914.1| general secretion pathway protein D [Acinetobacter junii SH205]
gi|262311389|gb|EEY92475.1| general secretion pathway protein D [Acinetobacter junii SH205]
Length = 709
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 53/326 (16%), Positives = 107/326 (32%), Gaps = 47/326 (14%)
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
+A + + V + G V + + +K+++LL+
Sbjct: 387 RLAGGELSADNVGGVLSARGTVSIDPRTNTLI---------INDTSQKIDQIRKMIDLLD 437
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--------------------- 228
++ + QV ++ I D K++G + I +
Sbjct: 438 VSVK-QVMIEARIVRASTDFTKEMGVKWGILSQGIASNNDLLVGGSDTTLWNLREPTADS 496
Query: 229 -------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ + G L F + L A++ ++ P
Sbjct: 497 ETGGWKYDIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVVSTP 556
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
+ Q+A SG Q Y + + D + L TP++ G++ +++
Sbjct: 557 KVLTADKQAAKIESGTQIPYSSSTGGGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLN 616
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
P G + + DT V + +G T+VL G+ + + + +P L +P
Sbjct: 617 ITKDSPGTPTPTGQL-TINKNTIDTNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLPY 675
Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
+G LFR + E+ I TP +V
Sbjct: 676 VGKLFRRESKQDNKRELLIFVTPRIV 701
>gi|237801193|ref|ZP_04589654.1| general secretion pathway protein D [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331024050|gb|EGI04107.1| general secretion pathway protein D [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 333
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 63/308 (20%), Positives = 111/308 (36%), Gaps = 21/308 (6%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205
G + + ++ S + + K++ + + QV ++ I EV
Sbjct: 12 SGSAGNGKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEV 71
Query: 206 RRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
+G Q S T + + G + G + + +
Sbjct: 72 SLTGELDMGVQWYLGRLAGNSGTTGNVANTAGSQGALGTGGAALGATDAFFYSFVSNNLQ 131
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHD 311
L ALER + L+ P+L ++ Q A G S +T ++ V
Sbjct: 132 VALRALERNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQ 191
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTI 368
GV+L P + G + + IQ +VS + P R T V SG TI
Sbjct: 192 TGVILDVVPRINPGGLVYMDIQQQVSNADNNASNNDANGNPRISSRSVSTQVAAQSGQTI 251
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
+L GL+K D + + +P L +IP L LF + ++ TE+ + TP ++ +
Sbjct: 252 LLGGLIKQDNAETVDAVPYLGRIPGLRWLFGTTSKSKGRTELIVLITPRVI--TSSSQAR 309
Query: 429 RPDDHYSV 436
+ D Y
Sbjct: 310 QVTDDYRQ 317
>gi|326315687|ref|YP_004233359.1| general secretion pathway protein D [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323372523|gb|ADX44792.1| general secretion pathway protein D [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 804
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 40/276 (14%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG- 249
QV ++ I EV + + + G Q + G + GG+ ++
Sbjct: 436 GRRAQVLVESLIVEVSANKVAEFGIQWQGVMGNYGNGTIGVIGTNSSASTTGGNANILNL 495
Query: 250 ------------------------------VLDRFSFETVLHALERATAIRTLAEPTLTA 279
+ + + + LE L+ P L
Sbjct: 496 ALAAATGNATSIASSASGLGKGLNVAIAPRINGNYYLGALANFLENTGDANVLSTPNLMT 555
Query: 280 ISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+ + A G + T S + T+V D G++L P + G + L
Sbjct: 556 LDNEEAQIIIGNNVPFVTGSYANTTGSSTVNPFTTVERKDVGLMLRVRPQINENGTVKLS 615
Query: 332 IQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ EVS+ NA + P+ R ++TV + G IVL GLL+D ++ +PL+
Sbjct: 616 LYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGNVIVLGGLLEDRYSMGQDKVPLMGD 675
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+P++G LFRN R++T + + P +++ A D
Sbjct: 676 LPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSD 711
>gi|291612584|ref|YP_003522741.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1]
gi|291582696|gb|ADE10354.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1]
Length = 688
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 18/250 (7%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------------KSF 230
+ L++ QV ++ E + +G + S TG S + +
Sbjct: 437 VKQLDVPVR-QVMIEARFVEAGETFNQTLGGRLSYTGPGSTVAGGGFAGPAGNRAALSTT 495
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ G V+ G ++ L+A E + +A P + A+ SG
Sbjct: 496 SLLPGAGSVTGGMTLNLFNAAATKVLTLELNASELDGTTKNIASPRVVTGDKTPATIESG 555
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
+ Y +SS GATSV + L TP + +G+++ VS+ +G +PS
Sbjct: 556 VEVPYLQATSS-GATSVAFKKAVLGLTVTPQITPDDHVGMKLS--VSQDTVGNIYSGVPS 612
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+K DT V + +GGT+V+ G+ D KE IPLL IPILG LF+ + + E+
Sbjct: 613 INTKKVDTQVLVDNGGTVVIGGVYTQDATDSKEQIPLLGDIPILGWLFKTDTIVKAKKEL 672
Query: 411 FIAATPFLVK 420
+ TP +VK
Sbjct: 673 LVFITPKIVK 682
>gi|288574989|ref|ZP_06393346.1| type II and III secretion system protein [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570730|gb|EFC92287.1| type II and III secretion system protein [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 570
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 82/440 (18%), Positives = 148/440 (33%), Gaps = 74/440 (16%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL----VSDPTKADVVVHSPR----- 85
+ ++IS+ V I V + D++ V DP+ A++ + R
Sbjct: 150 RIPVDGSDPFQTNRRISVDFRSVDIQDVFRMLADMMKVNIVLDPSVAEIPPLTMRFDEAP 209
Query: 86 --TMY-----LFG---KNVGQANVILIGHD-----GKQMLNLDILIERDIAHLEMTLRRF 130
++ L+G VG+ VI G++ + + D+ L L
Sbjct: 210 LREVFGYLMRLYGLSYAKVGKTLVIGSPEGISKVMGEEKTRVYDVAYSDVKTLPDMLGGL 269
Query: 131 --IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
I I V+ + + G + D +R ++ +
Sbjct: 270 TTIPKEKITVDERLGRLFVKGSENQLSDFERVLQTVDD---------------------- 307
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------------ 236
QV L+ I E++ + ++ + S S + GG
Sbjct: 308 ---PGKQVMLRARIIEIKDEASDELETMLNAVYKHWWLSTSSSGAEGGYSYVKDPDSYNP 364
Query: 237 --------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
G + G +T L AL A + LA P++ +SGQ AS
Sbjct: 365 PTGEDRPGGIEFPGIEIPDIGTGGIRLLDTGLKALVTANKGKVLANPSVITVSGQKASIK 424
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNA 345
Y + G + + + G L FTP V G I + + EV G
Sbjct: 425 LVENLKYISARDDAGNPTYSDEEVGPKLEFTPLVGRDGVISVELSIATGEVIAWKEGNQG 484
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+ P R+ T++ + G V+ GL + + IP+L IP+LG F++
Sbjct: 485 EEFPQTSEREVVTSIRVRDGEPFVVGGLFNERHTENTTKIPILGDIPLLGEFFKSKSKTD 544
Query: 406 EETEIFIAATPFLVKPVAMR 425
+ TE+ + P+++
Sbjct: 545 DRTEVVMVVIPYILNVTDGP 564
>gi|308535177|ref|YP_002137419.2| type II secretion system protein GspD [Geobacter bemidjiensis Bem]
gi|308052522|gb|ACH37623.2| type II secretion system protein GspD, putative [Geobacter
bemidjiensis Bem]
Length = 640
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 15/255 (5%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVS 240
+V+ L+ QV ++ IAEV + K++G Q + +S + S F G
Sbjct: 346 QVIQKLD-RRSRQVFVQAMIAEVSANKAKELGLQWGVVTGASNGTLSTVGTFDPFGAVAG 404
Query: 241 EGGDFSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
G ++ G L F L AL+ A+ L+ P + + A G
Sbjct: 405 LTGTLTLAGQLGITPPDAGVALFPATLKALQSNGALNVLSTPNIMTSDNKEAEIFVGENV 464
Query: 294 LYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDM 348
+ + ++ T S+ D G++L P + I L I E+S G
Sbjct: 465 PFLSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYIKLDIYQEISAVKDFGTATNPN 524
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
R A T+V + + T+++ GL++D Q + IPLL IP+LG LF+ + R++T
Sbjct: 525 LGSTKRSAKTSVVVKNTDTVIIGGLIQDTDQVTESKIPLLGDIPLLGWLFKTKKTTRDKT 584
Query: 409 EIFIAATPFLVKPVA 423
+ I TP ++K
Sbjct: 585 NLLIMLTPRIIKDAR 599
>gi|116688415|ref|YP_834038.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424]
gi|116646504|gb|ABK07145.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424]
Length = 543
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 78/435 (17%), Positives = 146/435 (33%), Gaps = 42/435 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
P + PP + ++AA + ++IS+ L V + +
Sbjct: 87 GPPIPLAPPARMSDAAA--RQPGDADDARRISLNLQGVGLAAAFDAIAR-FTGLNIVVGE 143
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRV 138
V T+ L +A L+ G M +++ A L R +
Sbjct: 144 QVRGTVTLRLNNVRWREAFDTLLDTHGLAMSRRGNVIWVTPAAELAARERERF---EMHA 200
Query: 139 EMVSDTVVLHGM-VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------- 190
+ V +Q L Q ++ +++ NLL +
Sbjct: 201 RAADLEPLASRTFVLHYPRAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRI 260
Query: 191 -----------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----------- 228
QV ++ I E + + +G + ++ P+
Sbjct: 261 TQIAGLIDAIDRPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPAAEGASFTANARN 320
Query: 229 --SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
AA G F + F++ + L ALE + ++ P + A
Sbjct: 321 ALDLAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAI 380
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 381 VEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTA 437
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
P+ + T VE+ +GGT+ + G+ + + +PLL KIP LGALFR+ +
Sbjct: 438 AGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQ 497
Query: 407 ETEIFIAATPFLVKP 421
E+ + TP +V
Sbjct: 498 RNELVVFITPTVVDA 512
>gi|89093502|ref|ZP_01166450.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92]
gi|89082192|gb|EAR61416.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92]
Length = 702
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 25/249 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS----------------------SSGPSKSFA 231
+QV ++ + ++ K +G + + ++G + +
Sbjct: 451 EQVLVEARLVNATSNVTKDLGVKWGFGYNDVDNGKGWIVDNSIGNVNFGNTTAGNTSNLM 510
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
D G S G L ALE +++P + +G+ A SG
Sbjct: 511 VDLGASVTSPGTIAIGFKPGASSLLALELSALETDGKAEIVSQPKVLTTNGKQAKIESGS 570
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
+ Y+TV G S+ D + L TP + RI + + V S
Sbjct: 571 EIPYQTV--EDGEVSIEFKDVVLSLDVTPRINPGDRIAMDLLITQDSI-GQVLPNGEISI 627
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+ TTV +P G TIVL G+ K++ + +PLL +PI+G LFRN E+TE+
Sbjct: 628 DNNELQTTVVVPDGQTIVLGGVFKNETSETINKVPLLGDLPIMGPLFRNKENQAEKTELL 687
Query: 412 IAATPFLVK 420
I TP LV+
Sbjct: 688 IFITPKLVR 696
>gi|119898381|ref|YP_933594.1| general secretion pathway protein D [Azoarcus sp. BH72]
gi|119670794|emb|CAL94707.1| general secretion pathway protein D [Azoarcus sp. BH72]
Length = 675
Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats.
Identities = 75/434 (17%), Positives = 158/434 (36%), Gaps = 59/434 (13%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-------VQDVL--VSDPTKA 77
P E A + + + + ++ ++ + + V +++VL + +
Sbjct: 186 PVTLEFREAPLRVVFEALARASGLNFVFDRDVRAESKVTLFVRSSTIEEVLGLIGATQQL 245
Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
+ + + ++ ++ + + + L D +R+ + ++
Sbjct: 246 ERKMLNANSVLVYPATPAK-----QKEYVELVTRSFYLANADAKQAMTMVRQLVKSKDVF 300
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
V+ + VV+ AV L+ ++V+ L++A + V
Sbjct: 301 VDEKLNMVVIKDTP-------DAVRLA-----------------ERVLASLDVAEPE-VM 335
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR---- 253
L+V + EV R+ L+ +G ++ + + + +
Sbjct: 336 LEVEVLEVSRNKLQDLGIEYPTQVGYGLLTPNVTSTVSTAAGFATSTTLGGELAKGMINL 395
Query: 254 ----------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-- 301
+ VL+ LA P + + + A G + T +++
Sbjct: 396 RDRGSLVPYVSNPGAVLNLRAEDGDTSLLANPRIRVKNREKAKIHIGEKLPVFTTTATAN 455
Query: 302 -TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKAD 357
+ SV D G+ L P V + +++ EVS V V R A
Sbjct: 456 VGVSASVNYLDVGLKLDVEPAVTLEDEVVIKVALEVSSIVKEVTGPSSSLAYQVGTRSAA 515
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TT+ L +G T VLAGL+ D+ + +P L ++P++G LF R + +TE+ + TP
Sbjct: 516 TTLRLANGETQVLAGLINDEERSSARRLPGLGELPVVGRLFSAQRDSNTKTEVVLLITPR 575
Query: 418 LVKPVAMRDLSRPD 431
+V+ V L+R D
Sbjct: 576 IVRNVVAPSLARAD 589
>gi|330940238|gb|EGH43375.1| general secretion pathway protein D [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 295
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 58/242 (23%), Positives = 92/242 (38%), Gaps = 17/242 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244
QV ++ I EV+ +G Q S T + + G +
Sbjct: 21 PLQVQIETRILEVQLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 80
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTV 298
+ + + L ALE + L+ P+L ++ Q A G
Sbjct: 81 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 140
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRK 355
++ T +SV GV+L P + G + + IQ +VS G A P R
Sbjct: 141 NAGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTDTTGNGANGNPRISTRS 200
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T V SG T++L GL+K D + +P L +IP L LF N+ ++ TE+ + T
Sbjct: 201 VATQVAAQSGQTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLIT 260
Query: 416 PF 417
P
Sbjct: 261 PR 262
>gi|1246517|emb|CAA60131.1| pulD-like [Escherichia coli]
Length = 596
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 49/269 (18%), Positives = 99/269 (36%), Gaps = 21/269 (7%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ V++ L+I QV ++ IAE++ +G Q + S
Sbjct: 265 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 323
Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ + + + ++ +L AL ++ LA P++
Sbjct: 324 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 383
Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+ A+F G + + S +T +V G+ L P + + L I+
Sbjct: 384 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 443
Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
EVS + + ++ R + + + T+V+ GLL I+ + +PLL I
Sbjct: 444 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNCETVVVGGLLDKSIRGSESKVPLLGDI 503
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
P+LG LFR + + + P +++
Sbjct: 504 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 532
>gi|311105841|ref|YP_003978694.1| general secretion pathway protein D [Achromobacter xylosoxidans A8]
gi|310760530|gb|ADP15979.1| general secretion pathway protein D [Achromobacter xylosoxidans A8]
Length = 790
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 63/273 (23%), Positives = 106/273 (38%), Gaps = 30/273 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFV 239
+V++ L+ QV ++ I EV + G Q + G S + GG +
Sbjct: 414 EVIDQLDQR-RAQVLVESLIVEVSEAKAAEFGIQWMTGAGNINSDGTSFIGGTNLGGSGI 472
Query: 240 SEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISG 282
+ G ++ G+ + + A+E L+ P L +
Sbjct: 473 TGKGPTTIDGIGSGLTLGVVKGTVDVLGNKVINLGVLARAMENTGEANILSTPNLLTLDN 532
Query: 283 QSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
QSAS G + T S+ ++ D G+ L+ P + G + L I
Sbjct: 533 QSASILVGKTVPFVTGQYVTSGSNGSTNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQ 592
Query: 335 EVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
EVS NA R DT+V + G IVL GLL+D++ +PLL +P+
Sbjct: 593 EVSSIDESRSNATTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLSTNSVPLLGSLPV 652
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+G+LFR R +T + + P++V+
Sbjct: 653 IGSLFRYDSRKRTKTNLMVFLRPYVVRDANRTA 685
>gi|117625269|ref|YP_854407.1| putative type II secretion protein GspD [Escherichia coli APEC O1]
gi|115514393|gb|ABJ02468.1| putative type II secretion protein GspD [Escherichia coli APEC O1]
Length = 686
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|115350365|ref|YP_772204.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD]
gi|115280353|gb|ABI85870.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD]
Length = 553
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 58/295 (19%), Positives = 109/295 (36%), Gaps = 34/295 (11%)
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
+ L Q ++ +++ NLL + QV
Sbjct: 229 RALDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRIAQIAGLIDAIDRPSRQVR 288
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGD 244
++ I E + + +G + ++ P+ AA G F +
Sbjct: 289 IEARIVEGEQGFSRNLGARIALRAQGRAPTADGAASATDTRNALDLAARPLGGFEAATAG 348
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
F++ + L ALE + ++ P + A G + Y+ G
Sbjct: 349 FTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQGSELPYQ-AKVGNGV 407
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P + GR+ L + +V++ IG P+ + T VE+ +
Sbjct: 408 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEN 465
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V
Sbjct: 466 GGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSELVVFITPTVV 520
>gi|163751006|ref|ZP_02158238.1| MSHA biogenesis protein MshL [Shewanella benthica KT99]
gi|161329296|gb|EDQ00294.1| MSHA biogenesis protein MshL [Shewanella benthica KT99]
Length = 560
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 55/250 (22%), Positives = 92/250 (36%), Gaps = 24/250 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAADFGGKFVSEGGDFSVK 248
QV ++ I EV Q G G S ++
Sbjct: 280 RQVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTDIEFGTSTGGGSLSDQITSVIGGVTS 339
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
+F T++ L+ + L+ P +T ++ Q A G + T SST + +T
Sbjct: 340 LKFSGTNFSTMISLLDTQGDVDVLSSPRVTVLNNQKAVIKVGTDEYFVTNVSSTTISGIT 399
Query: 309 THDY----------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------ 352
G+ L TP + G + L I V + +
Sbjct: 400 PITTPEVELTPFFSGIALDVTPQIDGDGNVILHIHPSVINIKEQIKTIKISGSTLELPLA 459
Query: 353 ---VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+R++DT + SG +V+ GL+K + +L +PLL IP +G LF N + ++TE
Sbjct: 460 RSDIRESDTVIMARSGDVVVIGGLMKSENIELISKVPLLGDIPFIGELFTNRAKSLKKTE 519
Query: 410 IFIAATPFLV 419
+ I P +V
Sbjct: 520 LVILLKPTVV 529
>gi|119899935|ref|YP_935148.1| type 4 fimbrial biogenesis protein [Azoarcus sp. BH72]
gi|119672348|emb|CAL96262.1| probable type 4 fimbrial biogenesis protein [Azoarcus sp. BH72]
Length = 707
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 56/268 (20%), Positives = 108/268 (40%), Gaps = 33/268 (12%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPS 227
+++N +++A QV ++ I E ++ + +G + GSS S
Sbjct: 435 RLINEIDVA-PRQVLIEARIVEASKEFARDLGVRLGYGDAKDKSLGGGAKLGFGSSEFVS 493
Query: 228 KSFAAD-------------FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRT 271
+ A G F+ G + + L ALE R
Sbjct: 494 STTTAGTVDFQRNVGESATSGSGFLPTGFGSLNLTLFNSSLTRFLNLELAALESDGRGRV 553
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
++ P + + AS G + Y SS+GAT+V + L P + GR+ L
Sbjct: 554 VSSPRVLTANQVEASIEQGTEVPYLQA-SSSGATNVAFKKAVLSLKVKPQITPDGRLQLS 612
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
I+ P+ ++P + + V + +GGT+V+ G+ +++ ++ +P+L ++
Sbjct: 613 IEVNKDRPLFESAVLNVPPIETKNVKSEVLIDNGGTVVIGGIYEEEETSNEDRVPILGEL 672
Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
P++G LFR E+ + TP +V
Sbjct: 673 PVVGFLFRTRSKISNRKELLVFITPKIV 700
>gi|332702379|ref|ZP_08422467.1| general secretion pathway protein D [Desulfovibrio africanus str.
Walvis Bay]
gi|332552528|gb|EGJ49572.1| general secretion pathway protein D [Desulfovibrio africanus str.
Walvis Bay]
Length = 677
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 74/348 (21%), Positives = 128/348 (36%), Gaps = 27/348 (7%)
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
G+ + + L D L L + + G+V T S L+
Sbjct: 283 RGQGNVRVYKLEHADATELADVLNGLVGKTTGSAAAGGQAPKESGVV-TPVISSGVTILA 341
Query: 165 ETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----- 217
+ + A+ + ++++ L+ QV ++ I EV + G +
Sbjct: 342 DKATNSLVITAGADDFTLIEELLRDLD-TPRKQVLVEALIMEVSSTENVEFGSKLQGVVD 400
Query: 218 -------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR---FSFETVLHALERAT 267
+ G S P+ + V G ++ ++ + ++ A + +
Sbjct: 401 VGIGGREGVAGGFSNPAGLSESVLNPGTVFGIGAAAIPVTINGVTYTNLNALIAAGKINS 460
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPT 321
++ P + + Q AS T Y+T +S T T D G +L TP
Sbjct: 461 DFNIISTPQIMTLDNQEASITVAENRPYQTSQTSTLNDLNNIVTQFTYRDVGTILKLTPQ 520
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ G I L+I E SE +P R R +T V + G T+VL+GL+
Sbjct: 521 INEGGMIKLKIFQEFSEVDQAATGVSTLPVTRKRTTETAVVIREGQTVVLSGLIGKSATS 580
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDL 427
+PLL IP+LG LFR +T + + TP +V P +DL
Sbjct: 581 SSSRVPLLGDIPLLGWLFRYDTREERKTNLLVFITPRVVDSPEKAQDL 628
>gi|262273882|ref|ZP_06051695.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886]
gi|262222297|gb|EEY73609.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886]
Length = 533
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 72/369 (19%), Positives = 137/369 (37%), Gaps = 36/369 (9%)
Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
D + + L + G + G+ + + +E
Sbjct: 152 VDYLQLQRSGVSLTSISTGAISTDASAGSGEDEKSDRTSVPTGGTVIETLTESQF---WA 208
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
++E ++ G R+I S +A + + + ++ + +S+K + Q
Sbjct: 209 QLERAVSGMIGTGDGRSIVISPQAGLITVKAYPNELREVKRFLDASQK-------RLKRQ 261
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSVKGVL 251
V L+ + EV Q G S G+S G + G +S +
Sbjct: 262 VILEAKVLEVTLSDGYQQGVNWSNIGASIGSGGINISRPETKLAGDMISNVIGGQTNITI 321
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------- 301
+F +V++ L+ + L+ P +TA + Q A GG + T SS
Sbjct: 322 TDGNFSSVMNFLDTQGDVNVLSSPRVTAANNQKAVIKVGGDEYFVTDISSSDTSGDNSDS 381
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--------- 352
+T G++L TP + + L + V + V + +
Sbjct: 382 GPNIELTPFFSGILLDVTPQIDDDNGVLLHVHPAVVDVVTEEKTIQLGTSSEPYVLPLAK 441
Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R++D+ + SG +V+ GL+K +++ +PLL IP LG LFRN +++TE+
Sbjct: 442 TAIRESDSVIHARSGDVVVIGGLMKSSYEEVVSKVPLLGDIPGLGHLFRNVNRMKQKTEL 501
Query: 411 FIAATPFLV 419
I P +V
Sbjct: 502 VILLQPSVV 510
>gi|116049822|ref|YP_791371.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14]
gi|115585043|gb|ABJ11058.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14]
Length = 776
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 95/508 (18%), Positives = 169/508 (33%), Gaps = 60/508 (11%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
Q+T + + P+ L + ANA +++ I + + I L++ +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206
Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
D++ V+ A+V+ S GK+ V+ + +L + L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262
Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
+L A+S + D L G + + ++
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLRGERGQDGRGSGKRGLLVRADE 322
Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
L+ + ++ L++ Q+ ++ I E+ +I +G Q ++
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381
Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
FA G L F ++ AL R + L+
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441
Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
P+L + Q A G ++T S SS T+V D GV L TP +
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501
Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ L I+ E+S R +TV G IVL GL++DD+ +
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSR 561
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
+PLL IP +G LFR+SR R + + + P +V+ A +
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606
Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
R I + A+ + G I
Sbjct: 607 HGRYRSIQLLRGAAGEPVRPLFEDAGAI 634
>gi|104781447|ref|YP_607945.1| type II secretion system protein XcpQ-2; signal peptide
[Pseudomonas entomophila L48]
gi|95110434|emb|CAK15142.1| putative type II secretion system protein XcpQ-2; putative signal
peptide [Pseudomonas entomophila L48]
Length = 787
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 60/267 (22%), Positives = 100/267 (37%), Gaps = 25/267 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+V++ L+ QV ++ I EV D + G Q A G
Sbjct: 460 EVIDQLDQR-RAQVVVESLIVEVGEDDANEFGIQWQAGNLGKNGLFGGANLGGSGLGKGP 518
Query: 243 GDFSVK----------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
V GV + + AL+ L+ P L + ++AS
Sbjct: 519 TSIDVLPPGLSVGVVDGTVKIPGVGAVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAAS 578
Query: 287 FTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
G + + S+ ++ + G+ L+ P + G + L + EVS
Sbjct: 579 IFVGQTIPFVSGQYVTDGGGNSNNPFQTIQREEVGLRLNVRPQISEGGTVKLDVYQEVSS 638
Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
++ R DT++ L G +VL GLL+D Q EGIP LS +P +GALF
Sbjct: 639 VDQRASSAAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYTQSNEGIPWLSSLPGVGALF 698
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMR 425
R+ R +T + + P++V+
Sbjct: 699 RSERRASNKTNLMVFLRPYIVRDANAG 725
>gi|296389736|ref|ZP_06879211.1| secretion protein XqhA [Pseudomonas aeruginosa PAb1]
Length = 776
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 95/508 (18%), Positives = 169/508 (33%), Gaps = 60/508 (11%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
Q+T + + P+ L + ANA +++ I + + I L++ +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206
Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
D++ V+ A+V+ S GK+ V+ + +L + L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262
Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
+L A+S + D L G + + ++
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLRGERGQDGRGSGKRGLLVRADE 322
Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
L+ + ++ L++ Q+ ++ I E+ +I +G Q ++
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381
Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
FA G L F ++ AL R + L+
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441
Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
P+L + Q A G ++T S SS T+V D GV L TP +
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501
Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ L I+ E+S R +TV G IVL GL++DD+ +
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSR 561
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
+PLL IP +G LFR+SR R + + + P +V+ A +
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606
Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
R I + A+ + G I
Sbjct: 607 HGRYRSIQLLRGAAGEPVRPLFEDAGAI 634
>gi|241763436|ref|ZP_04761490.1| general secretion pathway protein D [Acidovorax delafieldii 2AN]
gi|241367378|gb|EER61699.1| general secretion pathway protein D [Acidovorax delafieldii 2AN]
Length = 697
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 9/235 (3%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV ++ +I EV + G Q + + + G S G + G FS
Sbjct: 420 PTQVLIEASIIEVTLGDDLKYGLQWAFSDTHRGGPGS--GLIGALPSASTGGFSYTLKDT 477
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GAT 305
+ L+AL + I+ ++ P+L + Q+A+ G Q +T ++ T
Sbjct: 478 LGNMRVTLNALAAKSLIKVISSPSLMVLDNQTATIAVGTQQPIRTGETTNLNTVGNSTTT 537
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+ D GV L P+V S + + I V++ ++ R+ + V + SG
Sbjct: 538 TYQYKDTGVQLSVQPSVNSGDLVTMDISQAVTDVGDEDTVTGQRAFLQRQISSKVAVRSG 597
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+VL GL+KD+ + G+PLLS +P++G LF + + TE+ + TP +V+
Sbjct: 598 EAVVLGGLIKDNSSSGRSGVPLLSSLPVVGGLFGATTSSSGRTELLVVITPKVVR 652
>gi|304311962|ref|YP_003811560.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma
proteobacterium HdN1]
gi|301797695|emb|CBL45917.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma
proteobacterium HdN1]
Length = 710
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 51/272 (18%), Positives = 106/272 (38%), Gaps = 32/272 (11%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------- 219
++ L++ QV ++ I R ++ +++G + ++
Sbjct: 441 LDQLDVPVR-QVLIEARIVIARANVGEEMGVRWNVVQRGKVGEDFHNVFLSGKGTGVESN 499
Query: 220 -----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ + ++ D+ + L ALE ++
Sbjct: 500 VESLTNTGKFTIGTNTVPLDFSVQGGDASSLALGLFDDKGLLDIELSALESEGRADVVST 559
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P + Q A SG + Y+ SS+GAT+ + + + L TP + GRI + ++
Sbjct: 560 PKVLTADQQKAKVASGTEIPYQEA-SSSGATTTSFKEAVLSLEATPQITPDGRIIMDLKV 618
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
A ++P +T+V + +G T+VL G+ + + + P L +P+L
Sbjct: 619 NQDSIGDIDTASNIPIIDTNSVETSVIVDNGQTVVLGGVFRSEEIKSVAKTPFLGDLPVL 678
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
G LFR + ++ +TE+ + TP +V V +
Sbjct: 679 GRLFRKNVSSQAKTELLVFITPKIVTDVVAKQ 710
>gi|91212377|ref|YP_542363.1| type II secretion protein GspD [Escherichia coli UTI89]
gi|218560038|ref|YP_002392951.1| general secretion pathway protein D precursor [Escherichia coli
S88]
gi|237706291|ref|ZP_04536772.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA]
gi|91073951|gb|ABE08832.1| hypothetical type II secretion protein GspD [Escherichia coli
UTI89]
gi|218366807|emb|CAR04576.1| general secretion pathway protein D precursor [Escherichia coli
S88]
gi|226899331|gb|EEH85590.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA]
gi|294493975|gb|ADE92731.1| general secretion pathway protein D [Escherichia coli IHE3034]
gi|307625435|gb|ADN69739.1| general secretion pathway protein D precursor [Escherichia coli
UM146]
gi|323951515|gb|EGB47390.1| general secretion pathway protein D [Escherichia coli H252]
Length = 686
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|146294651|ref|YP_001185075.1| general secretion pathway protein D [Shewanella putrefaciens CN-32]
gi|145566341|gb|ABP77276.1| general secretion pathway protein D [Shewanella putrefaciens CN-32]
Length = 703
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 61/281 (21%), Positives = 106/281 (37%), Gaps = 45/281 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
+ V+N L+I QV ++ I EV G Q + + G
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394
Query: 236 -------GKFVSEGGDFSVKG------------------------VLDRFSFETVLHALE 264
G +++ V G + F ++ A+
Sbjct: 395 WQAQDKEGTYITNPSTGEVIGKNPDTQGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVS 454
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFT 319
T LA P++T + Q ASF G + + ++S +V + GV L
Sbjct: 455 SDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 514
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
P + + L I+ EVS S+ R+ TTV SG +VL GL+ +++Q
Sbjct: 515 PQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEEVQ 572
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + +P L IP+LG LF++S + + + I P +++
Sbjct: 573 ESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIR 613
>gi|324018098|gb|EGB87317.1| general secretion pathway protein D [Escherichia coli MS 117-3]
Length = 686
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAGGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|186477814|ref|YP_001859284.1| general secretion pathway protein D [Burkholderia phymatum STM815]
gi|184194273|gb|ACC72238.1| general secretion pathway protein D [Burkholderia phymatum STM815]
Length = 787
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 61/269 (22%), Positives = 101/269 (37%), Gaps = 34/269 (12%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
V++ L+I QV ++ I E+ + +G Q I + + A G ++
Sbjct: 406 VIDQLDIRRP-QVYIEALIVELNSNTNANLGIQWQIGSGNVFAGTNLATGSGNSIINLTA 464
Query: 244 DFS---------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ V + +L AL + L+ P L +
Sbjct: 465 AAATGGIASALATQNLQQGLNVGWVHNLFGVNGLGALLQALSQTADANVLSTPNLITLDN 524
Query: 283 QSASFTSGGQHLYKTVSS--------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
Q A G +T S +T + D G+ LH P + G + L++ T
Sbjct: 525 QEAKIVVGTNVPIQTGSYSNLTSSTATTAFNTFDRIDVGLTLHIKPQITDGGILKLQLYT 584
Query: 335 EVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
E S V G P + R +TV +G IVL GL++D+ Q +PLL
Sbjct: 585 EDSAIVAGTTNVTTNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVTNSKVPLLGD 644
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
IP +G LFR+ R +T + + P ++
Sbjct: 645 IPWIGQLFRSENKTRAKTNLLVFLRPVII 673
>gi|191171834|ref|ZP_03033380.1| general secretion pathway protein GspD [Escherichia coli F11]
gi|215488288|ref|YP_002330719.1| putative type II secretion protein [Escherichia coli O127:H6 str.
E2348/69]
gi|312968706|ref|ZP_07782915.1| general secretion pathway protein D [Escherichia coli 2362-75]
gi|190907869|gb|EDV67462.1| general secretion pathway protein GspD [Escherichia coli F11]
gi|215266360|emb|CAS10797.1| putative type II secretion protein [Escherichia coli O127:H6 str.
E2348/69]
gi|312286924|gb|EFR14835.1| general secretion pathway protein D [Escherichia coli 2362-75]
gi|312947523|gb|ADR28350.1| general secretion pathway protein D precursor [Escherichia coli
O83:H1 str. NRG 857C]
gi|320195111|gb|EFW69740.1| General secretion pathway protein D [Escherichia coli WV_060327]
Length = 686
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|323494567|ref|ZP_08099671.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546]
gi|323311170|gb|EGA64330.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546]
Length = 674
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 66/453 (14%), Positives = 150/453 (33%), Gaps = 83/453 (18%)
Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98
I + + ++ ++ ++ V + ++ S M + + +
Sbjct: 162 NIILITGRAAVVNRLADIIKRVDQAGDKEIEVVELANASAAEMVRIVEALNKTTEAKNTP 221
Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTVV 146
++ +++ D + + + L L +A +R D V
Sbjct: 222 AFLQPKLVADDRTNSILISGDPQVRQRLRKLIQQLDVEMASKGNNRVVYLRYAKAEDLVD 281
Query: 147 LHGMVRTIQDSQRA------------VELS---ETFLSQSGRNQYANSSSKKVMNLLNIA 191
+ V ++++ V ++ ET ++ + V++ L+I
Sbjct: 282 VLKGVSDNLQAEKSTGAKGSNTQRGEVMIAAHPETNALVVTAPPDIMNALQDVISQLDIR 341
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHS--------------------------------- 218
QV ++ I E+ +G Q
Sbjct: 342 -RAQVLIEALIVEMAEGDGINLGVQWGSLETGAVIQYGNTGVPIGQVMVGLEEAKDTTTT 400
Query: 219 ------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
+ D+ + G + + ++ A+ + L
Sbjct: 401 ESYWNSTDNKWESRQTTEQGDYSTLASALSGAQGAALSVVMGDWTALISAVSTDSNSNIL 460
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
+ P++T + ASF G + T ++ +V + G+ L P +
Sbjct: 461 SSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNS 520
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ L I+ EVS + A D+ + R+ +T+V + G IVL GL+ + + + +PL
Sbjct: 521 VQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVEDGAMIVLGGLIDERALESESKVPL 579
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L IP LG LF+++ E+ + + P +++
Sbjct: 580 LGDIPYLGHLFKSTSTQVEKKNLMVFIKPTIIR 612
>gi|318607800|emb|CBY29298.1| type IV pilus biogenesis protein PilQ [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 416
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 74/402 (18%), Positives = 140/402 (34%), Gaps = 47/402 (11%)
Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL------IGHDGKQ 108
NK + L+ V++ AD + + ++G N+ L
Sbjct: 27 NKPVSLEFQDVPASVVLQ--ALADYQQLN----LVIASDIG-TNLSLRLVDVPWDQALAI 79
Query: 109 MLNLDILIERDIAHL------EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
+L + L + + + R + V + L ++ ++
Sbjct: 80 VLRMSHLKVEREGAVMLVFTEQDSEERRLRAEQKTVPESLSNLSLALQYANAEEVADSLN 139
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAE 204
L+E + + K N L I QV L I
Sbjct: 140 LAE----GGLLSPLGSVVVDKRTNTLLIRDTPASLALLKNWLAEMDLPLQQVQLAAHIVT 195
Query: 205 VRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
+ R+ L+++G + + + S +F + + F+V + R +
Sbjct: 196 MSRENLQELGVRWGMGDTKPTSSLRMSNFNVNLPLPNSAISAGFNVARIGGRLLELEL-S 254
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
ALE+ I +A P L Q+AS G Y GAT++ + + + TP
Sbjct: 255 ALEQENQIDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPK 314
Query: 322 VLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
+L G+I L ++ + P + + + ++ T + + G TIVL G+ +
Sbjct: 315 ILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSS 374
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+P+L+ IP LG LF+ + E+ I TP L+
Sbjct: 375 HGLNKVPILADIPWLGGLFKQDARQQSRRELVIFITPRLISA 416
>gi|170681179|ref|YP_001745227.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5]
gi|170518897|gb|ACB17075.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5]
Length = 686
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|167646061|ref|YP_001683724.1| general secretion pathway protein D [Caulobacter sp. K31]
gi|167348491|gb|ABZ71226.1| general secretion pathway protein D [Caulobacter sp. K31]
Length = 681
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 10/248 (4%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV ++ + EV + + G Q I G +L+
Sbjct: 426 PLQVVIEAVVTEVSLNDALRYGSQWFIRSGDDRA----ILSRGKTADPASTFPGFTYLLN 481
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---SSSTGATSVTT 309
R S L AL T + L+ P L ++ Q+AS G Q T +SS+ +S+
Sbjct: 482 RSSIAATLDALSSVTHVEVLSAPNLMVLNNQTASLEVGDQVPVSTGSALNSSSVISSIEY 541
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTI 368
D GV+L TP V S G + L I EVS+ + D P+ VRK T++ + G T+
Sbjct: 542 RDTGVLLKITPRVNSGGLVLLDIAQEVSDVSPTLSSTIDSPTISVRKIATSIAVQDGQTV 601
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
L GL++D+ ++L+ G+P LS +P+LGAL + +RE TE+ + TP +++ D+
Sbjct: 602 ALGGLIRDNNKRLRNGVPFLSAVPVLGALAGSRDNSRERTELLVLLTPRVLR--NSGDIQ 659
Query: 429 RPDDHYSV 436
D
Sbjct: 660 AVTDELRE 667
>gi|323960851|gb|EGB56471.1| general secretion pathway protein D [Escherichia coli H489]
Length = 686
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|331684607|ref|ZP_08385199.1| general secretion pathway protein D [Escherichia coli H299]
gi|331078222|gb|EGI49428.1| general secretion pathway protein D [Escherichia coli H299]
Length = 686
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|331659244|ref|ZP_08360186.1| general secretion pathway protein D [Escherichia coli TA206]
gi|331053826|gb|EGI25855.1| general secretion pathway protein D [Escherichia coli TA206]
Length = 686
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|218691255|ref|YP_002399467.1| general secretion pathway protein D [Escherichia coli ED1a]
gi|218428819|emb|CAR09618.1| general secretion pathway protein D precursor [Escherichia coli
ED1a]
Length = 686
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|332139655|ref|YP_004425393.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
MshL (pilus type IV) [Alteromonas macleodii str. 'Deep
ecotype']
gi|327549677|gb|AEA96395.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
MshL (pilus type IV) [Alteromonas macleodii str. 'Deep
ecotype']
Length = 582
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 59/313 (18%), Positives = 110/313 (35%), Gaps = 44/313 (14%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+ + ++ V + L + K +N + + QV L+ I EV + Q
Sbjct: 250 SPTEGRQVVVSPQAGLVTIRALPSEIAVVKDFLNQSQESLQRQVVLEARIIEVTLNDGYQ 309
Query: 213 IGFQHSITGSSSGPSKSFAADFG------------------------GKFVSEGGDFSVK 248
G + S S +F G G +S
Sbjct: 310 QGVRWDRIASGLTGSVNFGFSGGALASNFAANTAAGIDPAINAVNAIGNTISTDIGGVST 369
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------ 302
+ R F+ V++ L+ ++ L+ P +T + Q A G + T S++
Sbjct: 370 LRISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSTT 429
Query: 303 -----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348
+T G+ L TP + G + L + V+E +
Sbjct: 430 STENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLPL 489
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
+R++DT + G +V+ GL++ + + PLL IP +G F+N + +
Sbjct: 490 AQSNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSKR 549
Query: 409 EIFIAATPFLVKP 421
E+ I P +V+P
Sbjct: 550 ELVILIRPSVVQP 562
>gi|107102654|ref|ZP_01366572.1| hypothetical protein PaerPA_01003719 [Pseudomonas aeruginosa PACS2]
Length = 658
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 87/450 (19%), Positives = 157/450 (34%), Gaps = 48/450 (10%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
P L + ANA +I+ I + + + L++ V
Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220
Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133
D V + K A VI + ++ + L +L A+
Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174
+ + +D L + I + + + G +
Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+
Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399
Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G + + SF ++ AL T L+ P+L + Q
Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459
Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
A G ++T S SS T+V D GV L TP + + L I+ E+
Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519
Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
S P R +T+ +G IV+ GL++DD+ Q + +PLL IP+L
Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLL 579
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
G LFR+++ + + + P +V+ A
Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609
>gi|308051183|ref|YP_003914749.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM
9799]
gi|307633373|gb|ADN77675.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM
9799]
Length = 551
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 66/288 (22%), Positives = 108/288 (37%), Gaps = 22/288 (7%)
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
D ++ + L + L + + + E QV L+ I EV Q G
Sbjct: 242 DGRQVLTLPQAGLVSVKAYPHELREVESFLGQAQQNLERQVVLEARILEVVLSDGYQQGI 301
Query: 216 QHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
S S G S + V++ F V+ L+ + TL
Sbjct: 302 NWSEVTGSIGSTDISFGTSEGQFSNAVTDVIGGITGISFTGTDFSAVVTLLDTQGDVDTL 361
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHDYGVVLHFTPTV 322
+ P +TAI+ Q A G + T S +T +T G+ L TP +
Sbjct: 362 SSPRVTAINNQKAVIKVGTDEYFVTDISATTVASDTPITTPDVELTPFFSGIALDVTPQI 421
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGL 373
G + L + V++ +R++DT + SG +V+ GL
Sbjct: 422 GQSGEVLLHVHPSVTDITEQTKTITALDTTLELPLAQSQIRESDTMIRAHSGDVVVIGGL 481
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+K +Q++ +PLL +IP LG LF N +TE+ I P +V+P
Sbjct: 482 MKTLQEQVESKVPLLGQIPFLGELFTNRSQRNVKTELVILLRPTIVEP 529
>gi|238025716|ref|YP_002909947.1| general secretory pathway protein D [Burkholderia glumae BGR1]
gi|237874910|gb|ACR27243.1| General secretory pathway protein D [Burkholderia glumae BGR1]
Length = 765
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 66/377 (17%), Positives = 122/377 (32%), Gaps = 77/377 (20%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ I E+ + +G Q +
Sbjct: 362 IQADAATNSLIITASDPVYRNLRAVVDQLDER-RAQVYIEALIVELNSNTSANLGIQWQV 420
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS----------------------------VKGVL 251
++ S + G + G + +K +
Sbjct: 421 ANNALYAGSSLGTNVSGLGNTITGLTAAAAAGSAGGANGGAAAAASLTPGLNIGWLKNMF 480
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTG 303
+L A ++ L+ P L + + A G + +SS
Sbjct: 481 GITGLGALLQAFSGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIATGSYSNLTSGNSSNA 540
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTV 360
+ D G+ LH P + G + L+I TE S V + +P++ R +TV
Sbjct: 541 FNTFDRQDVGLTLHVKPQITEGGILKLQIYTEDSAVVPSTTSSTAVGVPTFSKRSIQSTV 600
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV- 419
+G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 601 LCDNGEIIVLGGLMQDNYQVGNNKVPLLGDIPWIGQLFRSEGKQRQKTNLMVFLRPVILT 660
Query: 420 ----------------------------------KPVAMRDLSRPDDHYSVEDDAKAFFF 445
PV PD+ + + F
Sbjct: 661 DHATTQAITANRYDYIQGVQGAYRTDNNLIRDKDDPVTPPMPLGPDEGVAPAAN--LFDL 718
Query: 446 NRVNKIYGPKEASEVEG 462
R+ + G G
Sbjct: 719 TRMTRRPGYPPVPASAG 735
>gi|84394142|ref|ZP_00992875.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01]
gi|84375244|gb|EAP92158.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01]
Length = 492
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 65/310 (20%), Positives = 112/310 (36%), Gaps = 34/310 (10%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
++E ++ G +++ + +A + + + + S+K + Q
Sbjct: 166 QLEAAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIREVREFLGISQKRLQR-------Q 218
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----V 250
V L+ I EV Q G S S G S+ G
Sbjct: 219 VILEAKIMEVTLSDGYQQGISWSNLSKSIGSGGVVIDRPASTLPPLDAISSLLGGQTNVT 278
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302
+ SFE VL ++ + L+ P +TA + Q A G Y T SS+
Sbjct: 279 ISDGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTDLSSSVGSGDDAN 338
Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMPS- 350
+T G+ L TP + G + L + V +P
Sbjct: 339 VAPEVELTPFFSGISLDVTPQIDDKGSVFLHVHPAVIEVEEEVKELNLGSTTGIVQLPLA 398
Query: 351 -YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+R++D+ + G +V+ GL+K + + +P L IP LG LFRN+ ++TE
Sbjct: 399 KSSIRESDSVIRAKDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTE 458
Query: 410 IFIAATPFLV 419
+ I P +V
Sbjct: 459 LVILLKPTIV 468
>gi|319761508|ref|YP_004125445.1| general secretion pathway protein d [Alicycliphilus denitrificans
BC]
gi|330823377|ref|YP_004386680.1| general secretion pathway protein D [Alicycliphilus denitrificans
K601]
gi|317116069|gb|ADU98557.1| general secretion pathway protein D [Alicycliphilus denitrificans
BC]
gi|329308749|gb|AEB83164.1| general secretion pathway protein D [Alicycliphilus denitrificans
K601]
Length = 777
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 60/314 (19%), Positives = 110/314 (35%), Gaps = 36/314 (11%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G + T + + V++ L+ QV ++ I EV
Sbjct: 388 SGTDNQPSTGGQIQADPTTNSLIISAPEPQYRQLRAVIDKLD-GKRAQVLIESLIVEVSA 446
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------GDFSVKGVLDRF 254
+ + + G Q + G + + +
Sbjct: 447 NKVAEFGIQWQTAFGNYGNGAVGVIGTNSGVAGGNIIDLAVAAATGNYASLTSSAIGNGM 506
Query: 255 S------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ + + LE L+ P L + + A G + T S +
Sbjct: 507 NVAIAPRINGKYYLGALANFLENTGDANVLSTPNLLTLDNEEAQIIIGNNVPFPTGSYAN 566
Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYR 352
T+V D G++L PT+ G + L + EVS+ + PS
Sbjct: 567 TGGNGGAVNPFTTVERKDVGLMLRVRPTINENGTVKLTLYQEVSKVNESTLTNVNGPSTS 626
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R ++TV + G IVL GLL+D ++ +P++ +P+LGALFRN +R++T + +
Sbjct: 627 KRSIESTVLVDDGSVIVLGGLLEDSYSLNQDKVPVMGDLPVLGALFRNENRSRKKTNLMV 686
Query: 413 AATPFLVKPVAMRD 426
P +++ A D
Sbjct: 687 FLRPMVIRDNATSD 700
>gi|218778338|ref|YP_002429656.1| type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01]
gi|218759722|gb|ACL02188.1| Type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01]
Length = 844
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 52/293 (17%), Positives = 104/293 (35%), Gaps = 29/293 (9%)
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
V++ V++ + + V L + QV ++ + E +
Sbjct: 551 VKSPDRGSVDVDIRTNTIIMIDIKDRIKRARDIVSRLDRVTA--QVQIEARVVEAQTTFS 608
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------------------------DFS 246
+ IG + + GG +FS
Sbjct: 609 RSIGLAWNGESGIQPGDSREGVGPQRGYDVLGGTYGYNWSVNYPTETDDYGNNTFGFNFS 668
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
L S L+A E I+ ++ P + + + A+ G G T
Sbjct: 669 RLLGLTPLSLNATLNAAESRGEIKIVSSPKIRTLDNKPATIK-QGIDYPIKQFDGDGNTV 727
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
+ + L TP V R+ +++ E ++ ++ S+ ++ DT + + G
Sbjct: 728 IVYKAVDLQLEVTPHVTQDRRVSMKMTVEKNDVGAVISEEQ--SFNTKEVDTELLVNDGD 785
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
T+V+ G++K + +G P L +P+LG LF++S + E E+ + TP +V
Sbjct: 786 TVVIGGIIKTTFRDDVDGWPGLIDVPVLGWLFKDSTKSEEREELLVFITPTIV 838
>gi|218890695|ref|YP_002439559.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58]
gi|254236075|ref|ZP_04929398.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719]
gi|254241802|ref|ZP_04935124.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192]
gi|126168006|gb|EAZ53517.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719]
gi|126195180|gb|EAZ59243.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192]
gi|218770918|emb|CAW26683.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58]
Length = 658
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 87/450 (19%), Positives = 157/450 (34%), Gaps = 48/450 (10%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
P L + ANA +I+ I + + + L++ V
Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220
Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133
D V + K A VI + ++ + L +L A+
Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174
+ + +D L + I + + + G +
Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+
Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399
Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G + + SF ++ AL T L+ P+L + Q
Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459
Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
A G ++T S SS T+V D GV L TP + + L I+ E+
Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519
Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
S P R +T+ +G IV+ GL++DD+ Q + +PLL IP+L
Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLL 579
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
G LFR+++ + + + P +V+ A
Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609
>gi|113968501|ref|YP_732294.1| general secretion pathway protein D [Shewanella sp. MR-4]
gi|114045664|ref|YP_736214.1| general secretion pathway protein D [Shewanella sp. MR-7]
gi|113883185|gb|ABI37237.1| general secretion pathway protein D [Shewanella sp. MR-4]
gi|113887106|gb|ABI41157.1| general secretion pathway protein D [Shewanella sp. MR-7]
Length = 700
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 59/279 (21%), Positives = 103/279 (36%), Gaps = 43/279 (15%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
+ V+N L+I QV ++ I EV G Q + + G
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394
Query: 236 -----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ G + + F ++ A+
Sbjct: 395 WQAQGEDGTTVCTENGTCTENPDSRGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVSAD 454
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPT 321
T LA P++T + Q ASF G + + ++S +V + GV L P
Sbjct: 455 TNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVVPQ 514
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ + L I+ EVS S+ R+ TTV SG +VL GL+ +++Q+
Sbjct: 515 INEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEEVQES 572
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ +P L IP+LG LF++S + + + I P +++
Sbjct: 573 VQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIR 611
>gi|153947341|ref|YP_001402915.1| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 31758]
gi|152958836|gb|ABS46297.1| protein transporter HofQ [Yersinia pseudotuberculosis IP 31758]
Length = 458
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
P E A +++ + +++++ + + + + +V P +A ++
Sbjct: 71 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 126
Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
L + G ++ + ++ A +TL A++ + +
Sbjct: 127 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 182
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L G + + S A + + T L + A + + L + QV L I +
Sbjct: 183 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 238
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
+ L+++G + G G + DF SV + E L A
Sbjct: 239 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 297
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
LE+ + +A P L Q+AS G Y A ++ + + + TP +
Sbjct: 298 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 357
Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
L G+I L ++ + P I + +M ++ T V + G TIVL G+ + +Q
Sbjct: 358 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 417
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+PLL+ IP+LGA+FR + E+ I TP L+
Sbjct: 418 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 458
>gi|323188610|gb|EFZ73895.1| general secretion pathway protein D [Escherichia coli RN587/1]
Length = 686
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|198283019|ref|YP_002219340.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218665348|ref|YP_002425223.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247540|gb|ACH83133.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218517561|gb|ACK78147.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 784
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 53/291 (18%), Positives = 97/291 (33%), Gaps = 44/291 (15%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------------------- 224
QV ++ I +V + +G T +S
Sbjct: 495 RPVPQVLIEARIVQVTTSAAQSLGVNWGGTYTSGGGGGIVNLSGTGATGVTSTQGGAYPM 554
Query: 225 -----------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
S A F++ L AL+
Sbjct: 555 SGTTTTTGTGFTTPALVNLVPSTAGTALASMNPASLGFALGTAAGNRILNLQLQALQADN 614
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
+ ++ P + + A G + Y+ +SS GAT+V+ + L TP + G+
Sbjct: 615 RAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATAVSFKKAVLSLDVTPHISPNGK 673
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I L + +P ++ T + + +G T+V+ G+ D Q + G+PL
Sbjct: 674 ITLDVDARNDQPNYAQAMPSGIPINTQQVKTKLLVNNGQTVVIGGIYTDSTTQNETGVPL 733
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
L IP+LG LF++ + +TE+ + TP +V + L +
Sbjct: 734 LRDIPLLGWLFKSHINSVAKTELLVFLTPKVVGGESPGGLGVASAGSNPGT 784
>gi|15598301|ref|NP_251795.1| general secretion pathway protein D [Pseudomonas aeruginosa PAO1]
gi|544439|sp|P35818|GSPD_PSEAE RecName: Full=General secretion pathway protein D; Flags: Precursor
gi|9949215|gb|AAG06493.1|AE004734_11 general secretion pathway protein D [Pseudomonas aeruginosa PAO1]
gi|431185|emb|CAA48582.1| XcpQ [Pseudomonas aeruginosa PAO1]
Length = 658
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 87/450 (19%), Positives = 157/450 (34%), Gaps = 48/450 (10%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
P L + ANA +I+ I + + + L++ V
Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220
Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133
D V + K A VI + ++ + L +L A+
Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174
+ + +D L + I + + + G +
Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+
Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399
Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G + + SF ++ AL T L+ P+L + Q
Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459
Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
A G ++T S SS T+V D GV L TP + + L I+ E+
Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519
Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
S P R +T+ +G IV+ GL++DD+ Q + +PLL IP+L
Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLL 579
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
G LFR+++ + + + P +V+ A
Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609
>gi|90022332|ref|YP_528159.1| peptidase M41, FtsH [Saccharophagus degradans 2-40]
gi|89951932|gb|ABD81947.1| type II and III secretion system protein [Saccharophagus degradans
2-40]
Length = 727
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 60/304 (19%), Positives = 113/304 (37%), Gaps = 42/304 (13%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+ +A+ T + +++++ ++I QV ++ I D K++G
Sbjct: 419 SERGQAIVDERTNSIILTDTEEKIDDFRRLVDRIDIPVR-QVMIEARIVIANSDFRKELG 477
Query: 215 FQ---------------HSITGSSSGPSKSFAADFGGKFV-------------------- 239
+ +TG +G + + + FV
Sbjct: 478 VRMAGDAVETSVSGDTKFEMTGRLTGLTAADGSGPEALFVDTDGDGVTDDERSLLDSSLV 537
Query: 240 -----SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
+ G F+ + F L ALE + +++P + Q AS SG +
Sbjct: 538 DLGVFNPAGAFTWNVISSNFLLGMELSALENSGYAEIVSQPKVITGDKQKASIESGTEIP 597
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
Y+ S+S G T + + + L TP + R+ + + +P +
Sbjct: 598 YQEESASGGTT-TSFKEAVLKLEVTPQITPDNRVIMDLVINQDSISSIDANSGIPVIDIT 656
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +T V + G TIVL G+ + + +PLL IP +G LFRN + ++ EI I
Sbjct: 657 QLETQVLVADGETIVLGGIYTTNTFTGETKVPLLGDIPFVGKLFRNDFKSEDKREILIFI 716
Query: 415 TPFL 418
TP +
Sbjct: 717 TPRI 720
>gi|124385937|ref|YP_001027735.1| type II/III secretion system protein [Burkholderia mallei NCTC
10229]
gi|124293957|gb|ABN03226.1| type II/III secretion system protein [Burkholderia mallei NCTC
10229]
Length = 616
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 189 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 247
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 248 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 304
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 305 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 364
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 365 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 424
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 425 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 484
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 485 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 541
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 542 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 601
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 602 SELVVYITPTVV 613
>gi|292900933|ref|YP_003540302.1| protein transport protein [Erwinia amylovora ATCC 49946]
gi|291200781|emb|CBJ47915.1| protein transport protein [Erwinia amylovora ATCC 49946]
Length = 406
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 76/421 (18%), Positives = 156/421 (37%), Gaps = 31/421 (7%)
Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV--LV 71
+ L S + A+ P + A + + +++++ + + + + ++DV
Sbjct: 1 MALISPLAA-AQPPLTLAFDNAPVAQVLQALADYQQLNLVVAPGVEGHLSLRLKDVPWRQ 59
Query: 72 SDPTKADVVVHS----PRTMYLFGK---NVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
+ S + +F Q + + ++ML L I +
Sbjct: 60 ALQLVIKTGKLSMEQQGNVLMVFPASWQQEEQRKAAVQREEQEKMLPLFDRILTLVHADA 119
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
++ + R+ ++ L ++ L++T +
Sbjct: 120 ASVNTSLQSERARLMSARGSITLDSRTNSLLLRDTEKALAQT---------------EHW 164
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKFVSE 241
+ L++ +Q+ L I + + L+++G ++G + +
Sbjct: 165 VRQLDVPL-EQIELAAQIVTMSEESLRELGVTWGMSGEAQVADALRTSQLRVDLASGRPA 223
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G LD E L ALE +A P L Q+AS G + Y+ + +
Sbjct: 224 GVAGLTLAKLDGRLLELELSALESEHQADIIASPRLFTSHQQTASIKQGTEIPYEVSTGN 283
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+G+T++ + + + TP V S GRI L I V + ++ + ++ DT
Sbjct: 284 SGSTTMEFKEAMLAMEVTPLVQSNGRILLKLHISQNVPGRNMRSGENEVLTIDKQEIDTQ 343
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V L G T+ L G+ + +P L IP+LG+LFR+ ++ E+ I TP LV
Sbjct: 344 VMLKDGQTLALGGIFQQQSATGSTRVPWLGDIPLLGSLFRHDVRQQKRRELVIFITPRLV 403
Query: 420 K 420
+
Sbjct: 404 R 404
>gi|313108415|ref|ZP_07794431.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016]
gi|310880933|gb|EFQ39527.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016]
Length = 658
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 87/450 (19%), Positives = 156/450 (34%), Gaps = 48/450 (10%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
P L + ANA +I+ I + + + L++ V
Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220
Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133
D V + K A VI + ++ + L +L A+
Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174
+ + +D L + I + + + G +
Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+
Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399
Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G + + SF ++ AL T L+ P+L + Q
Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459
Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
A G ++T S SS T+V D GV L TP + + L I+ E+
Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519
Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
S P R +T+ +G IV+ GL++DD+ Q + +PLL IP L
Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFL 579
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
G LFR+++ + + + P +V+ A
Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609
>gi|306816695|ref|ZP_07450827.1| general secretion pathway protein D precursor [Escherichia coli
NC101]
gi|305850260|gb|EFM50719.1| general secretion pathway protein D precursor [Escherichia coli
NC101]
Length = 686
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGSVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|307731211|ref|YP_003908435.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003]
gi|307585746|gb|ADN59144.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003]
Length = 613
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 77/446 (17%), Positives = 148/446 (33%), Gaps = 47/446 (10%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
+ + P V P + + A + K IS+ + + V
Sbjct: 177 VAAPASALEGPPVPLPPLTRLSGAPKVPADATLAADDKPISLNFQRAELGAVLNAFAQ-F 235
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRR 129
A V ++ L A L+ G M + +++ IA L R+
Sbjct: 236 TGLNIVASERVRGSVSLRLDKVPWRVAFDTLLDVHGLAMERHGNVVWVAPIADLAARERQ 295
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTI-----QDSQRAVELSETFLSQSGRNQYANSSSKKV 184
E + L + ++ L +Q ++ ++
Sbjct: 296 RF-------EAHARAADLEPLASRTFQLHYARAEDVRRLLTGSGNQRVLSKRGAVTADPR 348
Query: 185 MNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
NLL + QV ++ I E + +G + S+ G+S+
Sbjct: 349 TNLLFVTDLEGRLAQIAALLDSVDRPTRQVLIEARIVEGEHGFSRNLGVRLSMAGTSADG 408
Query: 227 SKSFAAD------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
S + F + ++ L ALE + ++
Sbjct: 409 STRGLSGGKDGLVYDLSARPIAGFDAATAGLTLFAAGATRLLNIELSALEAEGRGQVVSS 468
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P + A G + Y+ G + V + L P ++ GR+ L +
Sbjct: 469 PRVVTADRMKAVVEQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL-- 525
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
+V++ +G P+ + T VE+ GGT+ + G+ D + +P+L KIP+L
Sbjct: 526 DVAKDSVGEQTDAGPAINTKHVQTRVEVEDGGTVSIGGIYATDGRDDVTRVPVLGKIPVL 585
Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
GALFR+ + +E+ + TP +V+
Sbjct: 586 GALFRHRAHRDQRSELAVFITPRVVQ 611
>gi|326318805|ref|YP_004236477.1| general secretion pathway protein D [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375641|gb|ADX47910.1| general secretion pathway protein D [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 823
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 20/248 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------GPSKSFAADFGGKFVSE 241
QV ++ +I EV D Q G Q + + S S ++
Sbjct: 530 PTQVLIEASIVEVTLDDSLQYGLQWAFSNSGPSNLNGAGQLLTNAPGSNSSIGASIPTPT 589
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299
FS + VL+AL ++ ++ P+L + +A + G Q KT +
Sbjct: 590 TSGFSYALSNSLGNVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTGTLT 649
Query: 300 -----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYR 352
++ A ++ D GV L TP+V + + ++I V++ N P ++
Sbjct: 650 SAISGGTSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGNVSLQPVFQ 709
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R+ + V + SG IVL GL++D K GIPLL IP++G+LF N+ TE+ +
Sbjct: 710 QRQITSKVAVRSGEAIVLGGLIRDTNNSSKSGIPLLQDIPVVGSLFSNNGKTGTRTELLV 769
Query: 413 AATPFLVK 420
TP +V+
Sbjct: 770 VITPKVVR 777
>gi|116051101|ref|YP_790068.1| general secretion pathway protein D [Pseudomonas aeruginosa
UCBPP-PA14]
gi|115586322|gb|ABJ12337.1| general secretion pathway protein D [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 658
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 87/450 (19%), Positives = 156/450 (34%), Gaps = 48/450 (10%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
P L + ANA +I+ I + + + L++ V
Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220
Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133
D V + K A VI + ++ + L +L A+
Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174
+ + +D L + I + + + G +
Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+
Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399
Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G + + SF ++ AL T L+ P+L + Q
Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459
Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
A G ++T S SS T+V D GV L TP + + L I+ E+
Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519
Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
S P R +T+ +G IV+ GL++DD+ Q + +PLL IP L
Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFL 579
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
G LFR+++ + + + P +V+ A
Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609
>gi|117620233|ref|YP_854918.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561640|gb|ABK38588.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 557
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 67/288 (23%), Positives = 112/288 (38%), Gaps = 35/288 (12%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFAADFGGKFVS 240
+N + QV L+ I EV + + G S + G + + +
Sbjct: 268 LNQSESHLKRQVVLEARILEVALNEGYEQGVDWSGLSASWDGNKGITGGGSLTPSTIANT 327
Query: 241 EGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
FS G F +F ++ L+ + TL+ P +TA + Q A G +
Sbjct: 328 PNQIFSALGGGAGFKISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYF 387
Query: 296 KTVSSS------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
T +S+ T +T G+ L TP + G++ L I V +
Sbjct: 388 VTNASTTTTTSGTSAPIVTPNVELTPFFSGIALDVTPQIDEEGKVLLHIHPSVIDTEEQK 447
Query: 344 NAGDM----PSY------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
D+ P +R++DT V+ +G IV+ GL+K D Q++ +PLL IP
Sbjct: 448 KTIDVGTADPLILPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPW 507
Query: 394 LGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPD---DHYSVE 437
+G F N R + ++ E+ I P +V K +L R D +
Sbjct: 508 VGEAFTNRRESTKKVELVILLKPTVVEKDTWQNELQRSSELLDKWYPP 555
>gi|226951776|ref|ZP_03822240.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244]
gi|226837491|gb|EEH69874.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244]
Length = 735
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 27/264 (10%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L+ QV ++ I EV +Q+G Q + +SG ++ G
Sbjct: 374 ESAIQQLDTR-RQQVLIEAAIIEVVGGDAEQLGVQWVLGDLNSGVGLVNFSNLGSGLSKI 432
Query: 242 GGDFSVKG------------VLDRFSF-------ETVLHALERATAIRTLAEPTLTAISG 282
+ G + +F ++ AL+ T L+ P++ +
Sbjct: 433 AAGYLTGGAVGAAGAFGDGASIGLGNFENPRRAYGALIQALKANTKSNFLSTPSIVTMDN 492
Query: 283 QSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ A G + T S + T+V D G+ L P + G I L ++ E
Sbjct: 493 EEAYIVVGQNVPFVTGSVATQGNSTVNPYTTVERKDVGITLKVVPHIGEGGSIRLEVEQE 552
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
VS R T+V G T++L GL+ DD ++ IP+L IP LG
Sbjct: 553 VSNVQPNRGQATDLVTSKRAIKTSVLADHGQTVILGGLISDDTNLTRQSIPVLGDIPYLG 612
Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
LFR + ++ + + P +V
Sbjct: 613 RLFRADTRSNDKRNLLVFIHPTIV 636
>gi|326423839|ref|NP_760349.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6]
gi|319999208|gb|AAO09876.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6]
Length = 548
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 66/304 (21%), Positives = 113/304 (37%), Gaps = 34/304 (11%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
++ G +++ + +A ++ R ++ + + + QV L+ I
Sbjct: 227 GLIGSGKGQSVVVTPQAGVITVRAFPDEIREV------RQFLGISQERMQRQVILEAKIL 280
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-------DFSVKGVLDRFSF 256
EV Q G S +S G S S + G V G + SF
Sbjct: 281 EVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLPGLDAIGSLLGGQTNVTISDGSF 340
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
E VL + + L+ P +TA + Q A G Y T SS +
Sbjct: 341 EAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQYYVTALSSNVGNDDKSKAVPEVT 400
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
+T G+ L TP + G + L + V E ++ +R+
Sbjct: 401 LTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETKQLNLGGDFQNVTLPLAKSSIRE 460
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+D+ + G +V+ GL+K + + +P L IP LG LFRN+ ++TE+ I
Sbjct: 461 SDSVIRARDGDVVVIGGLMKSNTIERVSKVPFLGDIPALGHLFRNTSNLTQKTELVILLK 520
Query: 416 PFLV 419
P +V
Sbjct: 521 PTVV 524
>gi|224373395|ref|YP_002607767.1| type II and III secretion system protein [Nautilia profundicola
AmH]
gi|223589657|gb|ACM93393.1| type II and III secretion system protein [Nautilia profundicola
AmH]
Length = 449
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 60/286 (20%), Positives = 102/286 (35%), Gaps = 37/286 (12%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G+V D + E+ + +N LN +V + V I V
Sbjct: 164 SGLVTVTGDRNQIEEI------------------DRYINDLNNRLHKEVLIDVKIYSVTL 205
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ G S S S A S + F+ +L+ L +
Sbjct: 206 SSSHKTGIDWSQ------LSLSLADKSVPITASNIIGANAVFKEATFNVGGLLNFLAQNG 259
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--------VTTHDYGVVLHFT 319
+ +++ P + ++ Q A G YK S T + + + GV+L T
Sbjct: 260 NVNSISNPKIVTLNNQKALIKVGDTIYYKYASEITTDNNGNPTTEYTIDSKFVGVLLDIT 319
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLL 374
P + G I L I +S ++ P + + V+L T+VL GL+
Sbjct: 320 PQISDNGEIILSINPRISAFKDATQLSNVNRDMPPDTQDNTMISVVKLKDNDTLVLGGLI 379
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
DD Q G+P+L +IPI+ LF + + E+ TP ++
Sbjct: 380 TDDKQLKVNGVPVLKEIPIIKYLFSSREEITTKKELVFVITPHIID 425
>gi|161523474|ref|YP_001578486.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616]
gi|160340903|gb|ABX13989.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616]
Length = 573
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 34/298 (11%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196
+Q L Q ++ +++ NLL + QV
Sbjct: 248 ARAQDVQRLLAGATGQRLLSKRGAAAADARTNLLFVTDLAPRIAQIADLIAALDRPSRQV 307
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGG 243
++ I E + + +G + ++ + AA F +
Sbjct: 308 RIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAGASPAGARTALDLAARPLAGFDAATA 367
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F++ + L ALE + ++ P + A G + Y+ G
Sbjct: 368 GFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ-AKVGNG 426
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
T V + L P + GR+ L + +V++ +G P+ + T VE+
Sbjct: 427 VTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVD 484
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V
Sbjct: 485 DGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPTIVSA 542
>gi|294649022|ref|ZP_06726469.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC
19194]
gi|292825090|gb|EFF83846.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC
19194]
Length = 735
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 27/264 (10%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L+ QV ++ I EV +Q+G Q + +SG ++ G
Sbjct: 374 ESAIQQLDTR-RQQVLIEAAIIEVVGGDAEQLGVQWVLGDLNSGVGLVNFSNLGSGLSKI 432
Query: 242 GGDFSVKG------------VLDRFSF-------ETVLHALERATAIRTLAEPTLTAISG 282
+ G + +F ++ AL+ T L+ P++ +
Sbjct: 433 AAGYLTGGAVGAAGAFGDGASIGLGNFENPRRAYGALIQALKANTKSNFLSTPSIVTMDN 492
Query: 283 QSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ A G + T S + T+V D G+ L P + G I L ++ E
Sbjct: 493 EEAYIVVGQNVPFVTGSVATQGNSTVNPYTTVERKDVGITLKVVPHIGEGGSIRLEVEQE 552
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
VS R T+V G T++L GL+ DD ++ IP+L IP LG
Sbjct: 553 VSNVQPNRGQATDLVTSKRAIKTSVLADHGQTVILGGLISDDTNLTRQSIPVLGDIPYLG 612
Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
LFR + ++ + + P +V
Sbjct: 613 RLFRADTRSNDKRNLLVFIHPTIV 636
>gi|290968265|ref|ZP_06559808.1| bacterial type II and III secretion system protein [Megasphaera
genomosp. type_1 str. 28L]
gi|290781747|gb|EFD94332.1| bacterial type II and III secretion system protein [Megasphaera
genomosp. type_1 str. 28L]
Length = 394
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 77/443 (17%), Positives = 156/443 (35%), Gaps = 58/443 (13%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
+T +++I + + + + + A I + K +++ ++ + + +
Sbjct: 1 MKTCVRVLAIGIAAISWYMPVSALQVRVSDAPIRTVLEGLAKSGNLNLIIDDSVQGNMTL 60
Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
+ V + + + S Y G +G GKQ + +
Sbjct: 61 HLDHVTPAQA--VEAIAASQNLFYDTGSPIGIITAGRNEEKGKQYYTWQLKNTTP-EAVI 117
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
++ + + ++ S+TVV+ T +++Q +L + ++
Sbjct: 118 RAIQAVVPAAAVKSYADSNTVVVG---STKREAQLVNKLVQQLDKKTA------------ 162
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
QV + V I + R L + G + SG F
Sbjct: 163 ----------QVDVAVRIVSLDRKALHKRGIEWDWQPFGSGSQTVF-------------- 198
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
S+ + AL LA P + A +G++A G + + G
Sbjct: 199 ----------SWLGQIQALSEQGKAEILASPHIMASNGKAAQILIGDRVPVLKEHLANGE 248
Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
S++ + GV L++TP + G + I+ EVS PV V R+A T V +
Sbjct: 249 KTASISYEEAGVKLNYTPYIHQDGSVTASIEAEVSTPVW-VPEMKAYRISTRRAKTIVRM 307
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
T+V+ GL+ + + +PLL IP++G LF++ +ETE+ I +PV
Sbjct: 308 KPDKTLVIGGLIGKEEMEHFRKVPLLGDIPLVGKLFQSRYKTAKETEVVIMLQA---RPV 364
Query: 423 AMRDLSRPDDHYSVEDDAKAFFF 445
+ + + +
Sbjct: 365 QDEEQNTVATELFPPIEDEKCLL 387
>gi|255320222|ref|ZP_05361407.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82]
gi|255302661|gb|EET81893.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82]
Length = 726
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 52/275 (18%), Positives = 104/275 (37%), Gaps = 33/275 (12%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
++++LL++A + QV ++ I D K++G + I + S
Sbjct: 453 RMIDLLDVAVK-QVMVEARIVRASTDFTKEMGVKWGILSQGITRNNSLLVGGSETTLWNL 511
Query: 236 ---------------------GKFVSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLA 273
G S + + L F + L AL+ ++
Sbjct: 512 RDPDDDGKYTIERPQNLNVDLGVTASGASRIAFGLISLSDFMLDLELSALQADGYGEVIS 571
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
P + Q A SG Q Y++ ++ D + L+ TP++ G+I +
Sbjct: 572 TPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQML 631
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ S+ + + +T V + +G T+VL G+ + + + + +P+L +
Sbjct: 632 LNIT-SDTPGNPTPTGQIAINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGDL 690
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
P +G LFR + + E+ I TP +V A +
Sbjct: 691 PGVGRLFRRDAKSNNKRELLIFVTPRIVNDSATGN 725
>gi|114568932|ref|YP_755612.1| general secretion pathway protein D [Maricaulis maris MCS10]
gi|114339394|gb|ABI64674.1| general secretion pathway protein D [Maricaulis maris MCS10]
Length = 650
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 82/473 (17%), Positives = 165/473 (34%), Gaps = 54/473 (11%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
+ + + + N V+ I + +++ L++ + V++ +V
Sbjct: 138 ALAVVRPLIGAQGSVNATETGNVLVMVDYAENIARLRQVIRDLDRDTSVVEMVELTNVSA 197
Query: 72 SD-PTKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
D + S T++ A+ ++ + ++ I + R + +
Sbjct: 198 GDMTRILQQMRTSSTAGEDETIFNVAIAPIPASNTVLLRGNRDAVDRMIALVRRVDSVSQ 257
Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL------SETFLSQSGRNQYANS 179
+ R F + +L +V T+ + + T +
Sbjct: 258 SNRSFRVIYLSHADGEHLLPILQQVVDTLVAGEGTTRAPSVSHHAPTNALVINADPDVQR 317
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------- 231
+ V+ L+I QV ++ I E+ +++G Q + G +
Sbjct: 318 QLELVIRQLDIRRP-QVLVEGIIVEMSDSTARELGVQMLLAGGEGDTPLAMTRFSSNNPD 376
Query: 232 ------------------------ADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERA 266
A + GG G + F VL+A+E
Sbjct: 377 LLALTGAATSPGDDDSDLNVSLRDAAINSLLGASGGTLGFGGQNGSGNLFGLVLNAVESD 436
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPT 321
LA P++ A+ + A F SG + T +++ +V + GV L P
Sbjct: 437 VNSNVLATPSIMALDNEEAYFLSGQEIPVTTGEALGSNNTNPFRTVDREEVGVKLTVLPQ 496
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + L I EVS VNAG R+ TTV +G IVL GL++ + +
Sbjct: 497 ITEGNTVRLHIVQEVSSVAGAVNAGSSDLITNKREISTTVLADNGEIIVLGGLIQQEDEI 556
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
++G+P L ++P +G LFR+ T + + P +++ + D+ D+
Sbjct: 557 SEDGVPGLRRLPGVGRLFRSEGSTTRRTNLMVFIRPTIIR--SEADMQALTDN 607
>gi|212633091|ref|YP_002309616.1| type II and III secretion system protein:NolW-like protein
[Shewanella piezotolerans WP3]
gi|212554575|gb|ACJ27029.1| Type II and III secretion system protein:NolW-like protein
[Shewanella piezotolerans WP3]
Length = 721
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 58/279 (20%), Positives = 103/279 (36%), Gaps = 43/279 (15%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
+ V+N L+I QV ++ I EV G Q + + G
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVSEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 394
Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ G + + F ++ A+ T
Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDT 454
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPT 321
LA P++T + Q ASF G + + +S +V + GV L P
Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
V + L I+ EVS ++ R+ TTV SG +VL GL+ +++Q+
Sbjct: 515 VNEGNAVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINEEVQES 572
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ +P L IPI+G LF++S +++ + + P +++
Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKKNLMVFIKPTIIR 611
>gi|292493847|ref|YP_003529286.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4]
gi|291582442|gb|ADE16899.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4]
Length = 699
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 109/324 (33%), Gaps = 46/324 (14%)
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
L I + V L T+ A L+ +K
Sbjct: 390 ASDLAALIQAEENTLLSPRGHVTLDERTNTLLVMDTADRLA---------------DLRK 434
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG- 242
++ L+I QV ++ I D K +G + ++ G
Sbjct: 435 LVARLDIPVR-QVLIESRIVIANSDFSKDLGIRFGLSKREDTGGAFDEVVTSGSLNGTTQ 493
Query: 243 --------------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
++ + E L AL+ ++ P
Sbjct: 494 IINRETLELQDRMNVNLPVTRQDAARIALALTKLPLGNLLELELSALQAEGRGEVISNPR 553
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
+ + A G + ++ +SS GATSV+ + L P + RI + + V
Sbjct: 554 VITSNQNEALIEQGTEIPFQQATSS-GATSVSFKKAVLSLKVVPQITPDDRIIMDLT--V 610
Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
++ +G +PS R+ T V + +G T+VL G+ + + + +P L +P +G
Sbjct: 611 NKDSVGQVFNGVPSIDTREVATQVLVDNGQTVVLGGIYEQEQNRASRRVPFLGDLPYVGT 670
Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
LFR+ + E+ I TP ++K
Sbjct: 671 LFRDKSEVNNKDELLIFVTPKIIK 694
>gi|146309174|ref|YP_001189639.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
gi|145577375|gb|ABP86907.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
Length = 748
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 126/369 (34%), Gaps = 32/369 (8%)
Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
AD + L G +A + L+ + L + +A+
Sbjct: 222 IAD---PRSNRLLLLG--PREARLRLLKLAQSLDTPSSRSANTRVIRLRHADAKQLAE-- 274
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
+ D + ++ + + ++ + + S + + A Q
Sbjct: 275 -TLGDFGDNLSQSQGNQSSTPLKLMIRADQSLNAIVIMAEADMVSLFEDLVRQLDAPRAQ 333
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF---------- 245
V ++ I E+ DI +G Q +I G + ++ G + G
Sbjct: 334 VLVEAAIVEMSGDINDALGVQWAIDGRHNALGGVNFSNTGLSIGTLLGAIARDETAELAK 393
Query: 246 ----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
L +F ++ AL L+ PTL + Q A G ++T S +
Sbjct: 394 TLPNGAIFGLGNDNFGMLITALSATGKSNLLSTPTLLTLDNQPAEILVGQNVPFQTGSYT 453
Query: 302 -------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---Y 351
T++ D GV L TP + + L I+ E+S
Sbjct: 454 TDASGAGNPFTTIERKDIGVTLKVTPHINDGATLRLVIEQEISSIAPSTGLNAQAVDLVT 513
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R +TV G IVL GL++DD +PLL IP +G LFR++R R++ +
Sbjct: 514 NKRSIKSTVLADDGQVIVLGGLIQDDTSASASKVPLLGDIPGVGRLFRSTRDARQKRNLM 573
Query: 412 IAATPFLVK 420
+ P + +
Sbjct: 574 VFLRPSVAR 582
>gi|115380040|ref|ZP_01467087.1| general secretion pathway protein D [Stigmatella aurantiaca
DW4/3-1]
gi|310820456|ref|YP_003952814.1| general secretion pathway protein D [Stigmatella aurantiaca
DW4/3-1]
gi|115362957|gb|EAU62145.1| general secretion pathway protein D [Stigmatella aurantiaca
DW4/3-1]
gi|309393528|gb|ADO70987.1| General secretion pathway protein D [Stigmatella aurantiaca
DW4/3-1]
Length = 850
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 72/447 (16%), Positives = 147/447 (32%), Gaps = 69/447 (15%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
++S G +++ I+ + ++V+ P D + R +
Sbjct: 277 PTPGGMPPPDMSQGSGDTGGPVTL----SQIIPDERTNKLIIVASPGAFDRIQEIVREVD 332
Query: 89 LFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
+ + G+ NV L D +++ + + + A+ + R +
Sbjct: 333 IPTDSGGRINVYPLENADSEELASTLQTLAQGTANRPRNPAQQQPPGVPRQNAAVAAELF 392
Query: 148 HGMVR-TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V+ + + ++ + + +V+ L+I QV ++ I EV
Sbjct: 393 SGEVKVSADKATNSLVIVASQADFKNIV--------RVIEKLDIP-RRQVFVEAVIMEVN 443
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGG--------KFVSEGGDFSVKGVLDRFS--- 255
D + G + G +S G ++ G L
Sbjct: 444 LDRNSEFGINLHSGYKLDTSDGAATGIVGTKYTKQGAPPSLSLGSLVNLGGFLAGLQGPV 503
Query: 256 -------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-- 300
F VLHAL++ + + L+ P L + A T G ++ S
Sbjct: 504 IPELKNLGIDVPAFGVVLHALQQNSDVNVLSTPHLLTSDNEEAEITVGQNVPFQAGFSPG 563
Query: 301 ---------------------------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
+ +T + + L P + I + I
Sbjct: 564 SLGGTIGGIGGVTGGTNTGLSSALLGLGSSFAPITRQNVELKLTVKPQINESDFIRMVIT 623
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
+ E P+ R A TTV T+V+ G+++D + +P+L IP+
Sbjct: 624 EQTEEIASSDPVLG-PTTSKRSAKTTVVAKDQETVVIGGIMQDRTIESVSKVPILGDIPL 682
Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420
LG LFR + + +T + + TP++++
Sbjct: 683 LGHLFRETTRRKTKTNLLLFLTPYIIR 709
>gi|88858661|ref|ZP_01133302.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2]
gi|88818887|gb|EAR28701.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2]
Length = 563
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 62/278 (22%), Positives = 107/278 (38%), Gaps = 23/278 (8%)
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SIT 220
+ L ++ K+ + L + + QV L+ I EV Q G
Sbjct: 264 QASLVTVHALPSEIAAMKEFLRLSEESLQRQVILEAKIIEVTLKDDYQQGVNWKEVLGHI 323
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
GS+ + A+ G ++ G V F V+ L ++ L+ P +TA
Sbjct: 324 GSTDLTFATTASGQIGNTITAGIGGVSSLVFKNADFSGVVSLLSTQGDVQMLSNPRVTAT 383
Query: 281 SGQSASFTSGGQHLYKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ Q A G + T SST S+T G+ L TP + G + L
Sbjct: 384 NNQKAVIKVGQDEYFVTEVSSTTVTGNATTTTPEISLTPFFSGIALDVTPQIDKYGSVIL 443
Query: 331 RIQTEVSEPVIGVNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ V+E + +R++DT + SG +V+ GL++
Sbjct: 444 HVHPSVTETAEQRKVITLNNEEFVLPLAQSNIRESDTVIRAGSGEIVVIGGLMQTVTTDE 503
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ PLL +P+LG LF++ R +++ E+ I P +V
Sbjct: 504 ESKTPLLGDMPVLGHLFKSVRKRQDKKELIILIKPTVV 541
>gi|187930465|ref|YP_001900952.1| general secretion pathway protein D [Ralstonia pickettii 12J]
gi|187727355|gb|ACD28520.1| general secretion pathway protein D [Ralstonia pickettii 12J]
Length = 807
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 69/322 (21%), Positives = 113/322 (35%), Gaps = 44/322 (13%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPSKSFAADFGGKFVS 240
A QV ++ I EV Q+G Q G++ G + + G +
Sbjct: 430 ARRAQVYIESMIVEVTATKASQLGIQWMAGAGGPTTFFGGGTNFGSGANNLINLAGTIAT 489
Query: 241 EGGDF-----------------------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
+ +L AL ++ L+ P L
Sbjct: 490 ITSGGIGSTAAQTAIGTLSNSVGQLNGGNFGVFNRGSGLGAILSALGSDGSVNVLSTPNL 549
Query: 278 TAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+ + A G T S + T + D G+ L P + G +
Sbjct: 550 ITLDNEEAKILIGQNVPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVK 609
Query: 330 LRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
++I E S V G NA P+ VR +T V G +VL GLL+D+ Q ++ +P L
Sbjct: 610 MQIFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGL 669
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-FFFNR 447
IPILGALFR+ R +T + + P +++ A + D+ Y+ D + F
Sbjct: 670 GDIPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGTLSDNRYNYMRDTQQGFVSPN 728
Query: 448 VNKIYGPKEASEVEGQNYKGAI 469
+ K+ + N
Sbjct: 729 MLPTTSDKDTPVLPAPNAMRPA 750
>gi|325294579|ref|YP_004281093.1| type II and III secretion system protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065027|gb|ADY73034.1| type II and III secretion system protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 642
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 55/336 (16%), Positives = 121/336 (36%), Gaps = 34/336 (10%)
Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
++ L+ + + + + + ++ + ++ + S
Sbjct: 306 PKTKIIKQELQEPTKTYIVNLNYANAEEIEKEIKELVKKLDKRERITVNKSTNSLLLTVT 365
Query: 178 NSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSS---------GP 226
+++MNLL + QV +K I ++ K GF I G +
Sbjct: 366 KKHYQEIMNLLKKLDKPMKQVIVKAKIVQISTSAAKDFGFGWLIGGYNHMGTPPSSYITG 425
Query: 227 SKSFAADFGGKFVS-----------------EGGDFSVKGVLDRFSFETVLHALERATAI 269
S F + + E L AL+
Sbjct: 426 SYGFGLGSNTGVLPFINETSYSSLYNIPVGESTLALGILNKSQNLKVEIALKALQLDGNA 485
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPG 326
+ ++ P + ++ Q A+ G + Y+ + ++G +V+ ++L P + +
Sbjct: 486 KIVSSPEVLTLNNQEATIEQGIEIPYRESTVASGGATTYTVSFKRASLILKVKPHITNNN 545
Query: 327 RIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
I L ++ P + + + P+ R + +++ +G TIV+ G+ + + + K
Sbjct: 546 EIILDLEVRKDSPNYEHVALTGSNEPAIDTRNVKSRIKVANGNTIVIGGIYEKEKSKSKT 605
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G+P++S IP+LG LF+ E + I TP +V
Sbjct: 606 GVPVISNIPLLGWLFKQESVKFTEKNLLIFITPKVV 641
>gi|308048042|ref|YP_003911608.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799]
gi|307630232|gb|ADN74534.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799]
Length = 681
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 64/259 (24%), Positives = 105/259 (40%), Gaps = 24/259 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------------------TGS 222
+++++L++ + QV ++ + VR +I +++G + I G
Sbjct: 421 RLVDILDVPVK-QVVIESRMVTVRDNINEELGIRWGISDQQGDKGTAGTLPGAEDIANGI 479
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
S + + F V + D + L ALER +A P LT +
Sbjct: 480 VPSLSDRLNVNLPVVEPAGSIAFHVAKLGDGTLLDLELSALERENKGEIIASPRLTTANQ 539
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
+A G + + +SS GATSV + L TP + RI L +
Sbjct: 540 YTAFIEQGTEIPFVQSTSS-GATSVEFKKAVLGLTVTPQITPDNRIVLDLTVTQDTRGET 598
Query: 343 VNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
V P+ ++ T V +G TIVL G+ + +PLL IP +G LFRN
Sbjct: 599 VQTATGPAVAIDTQRISTQVLAQNGETIVLGGIFQQQQLNTVTKVPLLGDIPFVGVLFRN 658
Query: 401 SRFNREETEIFIAATPFLV 419
S+ E+ E+ I TP +V
Sbjct: 659 SQDFTEKKELLIFVTPKIV 677
>gi|91791490|ref|YP_561141.1| type II and III secretion system protein [Shewanella denitrificans
OS217]
gi|91713492|gb|ABE53418.1| type II and III secretion system protein [Shewanella denitrificans
OS217]
Length = 705
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 60/306 (19%), Positives = 110/306 (35%), Gaps = 48/306 (15%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ +T + + V+N L+I QV ++ I EV + G Q +
Sbjct: 315 IMAHVDTNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAENDDVGFGIQWAS 373
Query: 220 TGSSSGPSKSFAADFGGKFV---------------------------------------S 240
+ A G +
Sbjct: 374 MAGGGTQFNNLGATIGEVGAGVWAAREKDVAQVTTIDANNKPVVSNNPKTEGDYTLLAQA 433
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G + + F ++ A+ T LA P++T + Q ASF G + T S
Sbjct: 434 LGKVNGMAWGVASGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSQ 493
Query: 301 S------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
+ +V + GV L TP + + L I+ EVS ++ R
Sbjct: 494 NSSNGNANPFQTVERKEVGVKLKVTPQINEGTAVKLTIEQEVSGINGKTGVD--VTFATR 551
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ TTV SG +VL GL+ +++Q+ + +P L IP +G LF++S ++++ + +
Sbjct: 552 RLTTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPFIGHLFKSSSSSKKKKNLMVFI 611
Query: 415 TPFLVK 420
P +++
Sbjct: 612 KPTIIR 617
>gi|78064965|ref|YP_367734.1| type II and III secretion system protein [Burkholderia sp. 383]
gi|77965710|gb|ABB07090.1| type II and III secretion system protein [Burkholderia sp. 383]
Length = 543
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 60/297 (20%), Positives = 108/297 (36%), Gaps = 34/297 (11%)
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
+Q L Q ++ +++ NLL + QV
Sbjct: 219 RAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRLDQVASLIEAIDRPSRQVR 278
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------SFAADFGGKFVSEGGD 244
++ I E + + +G + ++ PS AA G F +
Sbjct: 279 IEARIVEGEQGFSRNLGARVALRAQGRPPSGESATFTTGARNALDLAARPLGGFEAATAG 338
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
F++ + L ALE + ++ P + A G + Y+ G
Sbjct: 339 FTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQGSEVPYQ-AKVGNGV 397
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P + GR+ L + +V++ IG P+ + T VE+ +
Sbjct: 398 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEN 455
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
GGT+ + G+ + + +PLL KIP LGALFR+ + E+ + TP +V
Sbjct: 456 GGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQRNELVVFITPTVVDA 512
>gi|313497412|gb|ADR58778.1| General secretion pathway protein D [Pseudomonas putida BIRD-1]
Length = 584
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 56/266 (21%), Positives = 103/266 (38%), Gaps = 26/266 (9%)
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK- 237
++ + ++ L+I QV ++ IAEV +++G Q G G
Sbjct: 272 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 330
Query: 238 -------------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ G + F+F +++AL+ + L+ PTL
Sbjct: 331 ASIAGAAASGDNEALGDLLSTTTGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 390
Query: 279 AISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+ AS G + + T S + ++ + GV L P + + L I
Sbjct: 391 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINVDNSVRLDIVQ 450
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
EVS +A D+ R+ T V + G ++L GL+ D++ + +PLL IP L
Sbjct: 451 EVSSIADTSSASDV-ITNKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 509
Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
G LFR+ + + + P +++
Sbjct: 510 GRLFRSDATRNTKQNLMVFIRPRILR 535
>gi|309785192|ref|ZP_07679823.1| general secretion pathway protein D [Shigella dysenteriae 1617]
gi|308926312|gb|EFP71788.1| general secretion pathway protein D [Shigella dysenteriae 1617]
Length = 681
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 370 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 429
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627
>gi|222034685|emb|CAP77427.1| hypothetical type II secretion proteinGspD [Escherichia coli LF82]
Length = 679
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 368 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 427
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625
>gi|145597400|ref|YP_001161475.1| putative outer membrane porin HofQ [Yersinia pestis Pestoides F]
gi|165928024|ref|ZP_02223856.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
F1991016]
gi|166010419|ref|ZP_02231317.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
E1979001]
gi|108781223|gb|ABG15281.1| putative membrane transport protein [Yersinia pestis Antiqua]
gi|145209096|gb|ABP38503.1| membrane transport protein [Yersinia pestis Pestoides F]
gi|165919973|gb|EDR37274.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165990509|gb|EDR42810.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
E1979001]
Length = 450
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
P E A +++ + +++++ + + + + +V P +A ++
Sbjct: 63 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 118
Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
L + G ++ + ++ A +TL A++ + +
Sbjct: 119 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 174
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L G + + S A + + T L + A + + L + QV L I +
Sbjct: 175 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 230
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
+ L+++G + G G + DF SV + E L A
Sbjct: 231 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 289
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
LE+ + +A P L Q+AS G Y A ++ + + + TP +
Sbjct: 290 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 349
Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
L G+I L ++ + P I + +M ++ T V + G TIVL G+ + +Q
Sbjct: 350 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 409
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+PLL+ IP+LGA+FR + E+ I TP L+
Sbjct: 410 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 450
>gi|323527558|ref|YP_004229711.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001]
gi|323384560|gb|ADX56651.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001]
Length = 576
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 54/296 (18%), Positives = 108/296 (36%), Gaps = 33/296 (11%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196
++ L +Q ++ ++ NLL + QV
Sbjct: 282 ARAEDVRRLLTGSGNQRVLSKRGAVTADPRTNLLFVTDLEGRLTQIAALLASVDRPTRQV 341
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------FGGKFVSEGGD 244
++ I E + +G + S+ G+++ + + F +
Sbjct: 342 LIEARIVEGEHGFSRNLGVRLSMAGTAADGTTRGLSGGKDGLVYDLSARPIAGFDAATAG 401
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ L ALE ++ P + A G + Y+ G
Sbjct: 402 LTLFAAGATRLLNVELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQGV 460
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P ++ GR+ L + +V++ +G P+ + T VE+
Sbjct: 461 SGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVED 518
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
GGT+ + G+ D + +P+L KIP+LGALFR+ + +E+ + TP +V+
Sbjct: 519 GGTVSIGGIYATDGRDDVTRVPVLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 574
>gi|170739479|ref|YP_001768134.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
gi|168193753|gb|ACA15700.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
Length = 797
Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 70/300 (23%), Positives = 122/300 (40%), Gaps = 21/300 (7%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205
G V + + + + S + +K++ +L A QV L+ IAEV
Sbjct: 457 SGAVYGSGARRGGIGIVADETNNSLVISATRTQYEKILRILGRLDARPTQVLLETVIAEV 516
Query: 206 RRDILKQIGFQHSITGSS---------SGPSKSFAADFGGKFVSEG--GDFSVKGVLDRF 254
+ + G Q + + S + G VS G +L+
Sbjct: 517 TLNDKLEFGVQWFLKNGGSRFNLAQSDTAASVASGTSGAGALVSAAMRGVPGFNYLLNDA 576
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSV 307
F VL+AL T + L+ P +T + ++A G Q S + +
Sbjct: 577 DFHVVLNALRGVTRVNVLSSPNITVLDNRTARLQIGDQVPIVKQSGQSALAGNAPILNQI 636
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGG 366
D GV+L TP V G + L I EVS+ V + + P+ R R+ T+V + G
Sbjct: 637 ELKDTGVILSVTPRVNKNGLVVLDINQEVSDVVPTTTSNINSPTIRQRRVATSVAVSDGH 696
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
++ + G++++ Q E +P+L +P++G FRN R TE+ + P +++ A D
Sbjct: 697 SLAIGGMVQEKAQIGTEALPVLGDLPVIGPAFRNKSDLRVRTELIVFLRPKVIRGTADAD 756
>gi|149190625|ref|ZP_01868893.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1]
gi|148835508|gb|EDL52477.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1]
Length = 674
Score = 169 bits (429), Expect = 8e-40, Method: Composition-based stats.
Identities = 51/281 (18%), Positives = 101/281 (35%), Gaps = 45/281 (16%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----- 237
+++ L+I QV ++ I E+ +G Q + S S G
Sbjct: 334 EIIKQLDIR-RAQVLIEALIVELADVDGANLGVQWGNASAGSVVQFSNTGASIGNVMVGM 392
Query: 238 ---------------------------------FVSEGGDFSVKGVLDRFSFETVLHALE 264
+ G + + ++ A+
Sbjct: 393 EEAKDKTTTETRYRADGTPYNVETKTSGDYTKLASALSGVQGAAVGIALGDWTALITAVS 452
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFT 319
+ L+ P++T + ASF G + T ++S +V + G+ L
Sbjct: 453 STSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSNNSNPFQTVDRKEVGIKLKVV 512
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
P + + L I+ EVS + A D+ + R+ +T+V + G +VL GL+ +
Sbjct: 513 PQINEGNSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLIDERAA 571
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + +P L IP LG LF ++ E+ + + P +++
Sbjct: 572 ESESKVPFLGDIPYLGRLFTSTSTTVEKKNLMVFIKPTIIR 612
>gi|315288713|gb|EFU48111.1| general secretion pathway protein D [Escherichia coli MS 110-3]
Length = 681
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 607
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627
>gi|134283134|ref|ZP_01769835.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305]
gi|134245329|gb|EBA45422.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305]
Length = 575
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 148 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 206
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 207 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 263
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 264 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRVLSKRGSVLADPRTNLLFVTDLSGRL 323
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 324 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 383
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 384 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 443
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 444 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 500
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 501 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 560
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 561 SELVVYITPTVV 572
>gi|51556732|gb|AAU06138.1| MshL [Pseudoalteromonas tunicata]
Length = 563
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 59/249 (23%), Positives = 97/249 (38%), Gaps = 23/249 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
QV L+ I EV Q G GS+ + A+ G ++ G
Sbjct: 293 RQVILEAKIIEVTLKDDYQQGVNWKEVLGHIGSTDLTFATTASGQIGNTITAGIGGVSSL 352
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------- 302
V F V+ L ++ L+ P +TA + Q A G + T SST
Sbjct: 353 VFKNADFSGVVSLLSTQGDVQMLSNPRVTATNNQKAVIKVGQDEYFVTEVSSTTVTGNAT 412
Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PS 350
S+T G+ L TP + G + L + V+E +
Sbjct: 413 TTTPEISLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETAEQRKVITLNNEEFVLPLAQ 472
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R++DT + SG +V+ GL++ + PLL +P+LG LF++ R +++ E+
Sbjct: 473 SNIRESDTVIRAGSGEIVVIGGLMQTVTTDEESKTPLLGDMPVLGHLFKSVRKRQDKKEL 532
Query: 411 FIAATPFLV 419
I P +V
Sbjct: 533 IILIKPTVV 541
>gi|300993062|ref|ZP_07180170.1| general secretion pathway protein D [Escherichia coli MS 200-1]
gi|301048227|ref|ZP_07195262.1| general secretion pathway protein D [Escherichia coli MS 185-1]
gi|300299921|gb|EFJ56306.1| general secretion pathway protein D [Escherichia coli MS 185-1]
gi|300305186|gb|EFJ59706.1| general secretion pathway protein D [Escherichia coli MS 200-1]
gi|324005480|gb|EGB74699.1| general secretion pathway protein D [Escherichia coli MS 57-2]
gi|324011870|gb|EGB81089.1| general secretion pathway protein D [Escherichia coli MS 60-1]
Length = 681
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627
>gi|28199566|ref|NP_779880.1| fimbrial assembly protein [Xylella fastidiosa Temecula1]
gi|182682302|ref|YP_001830462.1| type IV pilus secretin PilQ [Xylella fastidiosa M23]
gi|28057681|gb|AAO29529.1| fimbrial assembly protein [Xylella fastidiosa Temecula1]
gi|182632412|gb|ACB93188.1| type IV pilus secretin PilQ [Xylella fastidiosa M23]
Length = 636
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 49/264 (18%), Positives = 105/264 (39%), Gaps = 28/264 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------------GSSSGPSKSFAA 232
DQV ++ I + +G + + GSS+ ++
Sbjct: 370 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTAGSSTSATRGLNV 429
Query: 233 DFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
D GG + + + +F+ + L AL++ + ++ P + + +
Sbjct: 430 DLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIKQ 489
Query: 290 GGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIG 342
G + Y T V+ +V + + L TPT+ + R+ L + E+ + +
Sbjct: 490 GKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITI 549
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+
Sbjct: 550 ANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRG 609
Query: 403 FNREETEIFIAATPFLVKPVAMRD 426
++++ E+ I TP +++
Sbjct: 610 KDKQKAELLIFVTPKVLRVANATA 633
>gi|325275690|ref|ZP_08141579.1| general secretion pathway protein D [Pseudomonas sp. TJI-51]
gi|324099176|gb|EGB97133.1| general secretion pathway protein D [Pseudomonas sp. TJI-51]
Length = 613
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 89/502 (17%), Positives = 163/502 (32%), Gaps = 63/502 (12%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
L + ++ L S + P ANA V+ S + + + + + L+
Sbjct: 128 TLSGSVAADLAGLLRPLVSSSGYIGPSSSANALVVTDSAANLERLESLVLQLDSGQRHDY 187
Query: 63 PVDVQDVLVSDPT---------------------KADVVVHSPRTMYLFG-------KNV 94
+ V + + AD + + + G
Sbjct: 188 EL----VTLHNAQTEAVFAVVEAAAGGPDSGAQVVADA---NGSRLLILGPAKSRQRLAQ 240
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
++ + Q + L + L L + L G
Sbjct: 241 LTRSLDVAAPATAQNWRVVRLQHSNAEQLADVLGEVGKRLDGAPGTRDLGANLTGDAVVK 300
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
D+ + + S ++++ L+ QV + I EV I + +G
Sbjct: 301 ADADQNALV-------LLGEPQTLGSVEQIIQQLD-QPRAQVLIHAAIVEVSGSIDEALG 352
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEG----GDFSVKGVLDRFSFETVLHALERATAIR 270
Q + +F+ G G + F ++ AL ++
Sbjct: 353 VQWGVGTGGLNGGVTFSESGTGLADLLGKEAKLPGGAALAIGTDRFAALISALASSSRSN 412
Query: 271 TLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
L+ P+L + Q A G ++ S T+V D G+ L P +
Sbjct: 413 LLSTPSLLTLDNQEAHILVGQNVAFKTGSYVTPGSGSENPFTTVERKDIGISLKVRPHIN 472
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
+ L ++ E SE D+ R +T+ G IV+ GL+KD ++Q++
Sbjct: 473 EGQSLRLEVEQESSEIAPSTAENDL-ITNKRTLKSTILASDGEIIVIGGLIKDSMRQVER 531
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR--------DLSRPDDHYS 435
G+PLLS+IP LG LFR +E+T + + P +++ A R D R D
Sbjct: 532 GVPLLSRIPWLGGLFRWRSDIQEKTNLMVFLRPTILRSQAERVEVGRRAYDGVRAADDSP 591
Query: 436 VEDDAKAFFFNRVNKIYGPKEA 457
+ DA+ F R +
Sbjct: 592 LPADAQRLFEPRRLPSAQVPQP 613
>gi|256024452|ref|ZP_05438317.1| general secretion pathway protein D precursor [Escherichia sp.
4_1_40B]
Length = 686
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|218701737|ref|YP_002409366.1| general secretion pathway protein D [Escherichia coli IAI39]
gi|227887667|ref|ZP_04005472.1| type II secretion protein GspD [Escherichia coli 83972]
gi|301019909|ref|ZP_07184044.1| general secretion pathway protein D [Escherichia coli MS 196-1]
gi|218371723|emb|CAR19573.1| general secretion pathway protein D precursor [Escherichia coli
IAI39]
gi|227835063|gb|EEJ45529.1| type II secretion protein GspD [Escherichia coli 83972]
gi|299882007|gb|EFI90218.1| general secretion pathway protein D [Escherichia coli MS 196-1]
gi|307555055|gb|ADN47830.1| general secretion pathway protein GspD [Escherichia coli ABU 83972]
Length = 686
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|157959974|ref|YP_001500008.1| general secretion pathway protein D [Shewanella pealeana ATCC
700345]
gi|157844974|gb|ABV85473.1| general secretion pathway protein D [Shewanella pealeana ATCC
700345]
Length = 710
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 59/279 (21%), Positives = 105/279 (37%), Gaps = 43/279 (15%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
+ V+N L+I QV ++ I EV G Q + + G
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVGEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGV 394
Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ G + + F ++ A+ T
Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFAALIQAVSSDT 454
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPT 321
LA P++T + Q ASF G + + +S +V + GV L P
Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ + L I+ EVS ++ R+ TTV SG +VL GL+K+++Q+
Sbjct: 515 INEGSSVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLIKEEVQES 572
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ +P L IPI+G LF++S +++T + + P +++
Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKTNLMVFIKPTIIR 611
>gi|254429436|ref|ZP_05043143.1| Bacterial type II and III secretion system protein [Alcanivorax sp.
DG881]
gi|196195605|gb|EDX90564.1| Bacterial type II and III secretion system protein [Alcanivorax sp.
DG881]
Length = 384
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 96/411 (23%), Positives = 152/411 (36%), Gaps = 78/411 (18%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ + +L P V V SDP A + V G A
Sbjct: 18 TVSNAQDLTDSMRLAPGDQKVLTFPAAVSKVATSDPGVAALTV------------TGSAE 65
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
++L + VL +R
Sbjct: 66 LLLTAK------------------------------------AEGSAVLSVWLRNSSKPL 89
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R+ + T L + QV + + EV R L Q+G +S
Sbjct: 90 RSTVVVATTLGDALPFGT------------------QVQTDIRVLEVSRSELNQLGMSYS 131
Query: 219 ITGSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
+ + + AA G + G + ++ALE TLA
Sbjct: 132 NSFNGGQSAVGIAAPGSGFQVPGAVPTPLGTEGFNLFGFGANSVLAINALEAGGFAYTLA 191
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
EP+LT++SGQSASF SGG+ S+T + ++G+ L TPTV+ +I L++
Sbjct: 192 EPSLTSLSGQSASFLSGGEFPVP-TRSTTDGVQIEFKEFGIGLSLTPTVIDKSQIILKVA 250
Query: 334 TEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
EVSE + +P RVR+A+TTV L G T +++GL+ + + +P +
Sbjct: 251 PEVSELDFSAGVETGGVAVPGLRVRRAETTVSLAPGETFIISGLVSRNTINSSDRLPGIG 310
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSVED 438
IP+LGA FR+SR +++ E+ + TP LV P ++ P Y
Sbjct: 311 NIPLLGAFFRSSRIQKDDKELVMVVTPHLVTPQEATSPPVTLPGAGYHSSS 361
>gi|170022485|ref|YP_001718990.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis
YPIII]
gi|169749019|gb|ACA66537.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis YPIII]
Length = 460
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
P E A +++ + +++++ + + + + +V P +A ++
Sbjct: 73 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 128
Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
L + G ++ + ++ A +TL A++ + +
Sbjct: 129 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 184
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L G + + S A + + T L + A + + L + QV L I +
Sbjct: 185 -LQGGLLSPMGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 240
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
+ L+++G + G G + DF SV + E L A
Sbjct: 241 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 299
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
LE+ + +A P L Q+AS G Y A ++ + + + TP +
Sbjct: 300 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 359
Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
L G+I L ++ + P I + +M ++ T V + G TIVL G+ + +Q
Sbjct: 360 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 419
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+PLL+ IP+LGA+FR + E+ I TP L+
Sbjct: 420 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 460
>gi|251773365|gb|EES53914.1| putative type II secretion system protein D [Leptospirillum
ferrodiazotrophum]
Length = 604
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 71/371 (19%), Positives = 121/371 (32%), Gaps = 55/371 (14%)
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
LE+TLR+ I + + + S TV + G VR + +QR +++ L
Sbjct: 264 DKLEITLRKTIPHAVVSADPKSQTVSVRGTVRDVYLAQRYLDIVRDQL------------ 311
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFV 239
+V ++T+AE+ G S + S +
Sbjct: 312 ------------RREVFFRITVAEIDLSDANAYGINWSAMAKGVFNSTLSLTSGGTSNAG 359
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
F V+ AL+ + L +P + +SGQ S + Y
Sbjct: 360 LSATGGVATPYGATFGQTAVIQALDTIGRVHVLNQPYVGTVSGQPVSLNATTNIPYLQGE 419
Query: 300 S----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--- 346
+ + GV L TPT L +I L V+ V
Sbjct: 420 YPFFAGGLSSATETLPQIAYAAVGVNLEVTPT-LEGDQIHLHGTVVVNTLQQMVTINIKN 478
Query: 347 ----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
P R T + G TIV+ GL+ + + IP L IP L LF
Sbjct: 479 IGEFQNPQINTRSETTEITAHDGQTIVIGGLMANTKNKQFWTIPFLGSIPGLKWLFSGYN 538
Query: 403 FNREETEIFIAATPFL-----VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
+ ++ TE+ I TP + + + ++ PD + + ++ + A
Sbjct: 539 YQKQVTELAILITPEIKKTPRLDAASTEEMMDPDGRFYRKSLPG-------SRPFPVPPA 591
Query: 458 SEVEGQNYKGA 468
+ G G+
Sbjct: 592 PAIPGYGTGGS 602
>gi|146307949|ref|YP_001188414.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
gi|145576150|gb|ABP85682.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
Length = 645
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 80/451 (17%), Positives = 150/451 (33%), Gaps = 49/451 (10%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
P L + +NA +I+ I + + + L++ V V +
Sbjct: 154 PLVPQYGHLAAVTSSNALIISDRSANIARIQDLMRQLDQSGAQDFSV----VTLQHAWVM 209
Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL--------- 127
D V + K V+ + +L +A L +L
Sbjct: 210 DAAEVLNTSIARGQAKGTSATQVVADARTNRLILLGPPEARAKLADLARSLDSPSSRSAN 269
Query: 128 ----RRFIADSNIRVEMVSD---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
R D+ E + D + T + ++ L+ +
Sbjct: 270 TRVIRLRHNDAKSLAETLGDISEGLKNKEGSETTGRQSNILIRADESLNALVLLAEPDLV 329
Query: 181 S--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ + ++ L++ QV ++ I EV DI +G Q ++ + G
Sbjct: 330 ATLEDIVRQLDVP-RAQVMVEAAIVEVSGDITDAVGVQWAVDARGNTGGLGGVNFGGTGL 388
Query: 239 V---------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ + F ++ AL + L+ P+L + Q
Sbjct: 389 SVGTVLQILQSGEIPENTTLPDGAIIGIGSDRFGALITALSANSKSNLLSTPSLLTLDNQ 448
Query: 284 SASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
A G ++T S + T++ D GV L TP++ + L I+ E+
Sbjct: 449 KAEILVGQNVPFQTGSYTTDASGAGNPFTTIERKDIGVTLKVTPSINEGATLRLEIEQEI 508
Query: 337 SEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
S R +T+ G IVL GL++DD+ Q +PLL IP+
Sbjct: 509 SSIAPSTGLNAQAVDLVTNKRSIKSTILADDGQVIVLGGLIQDDVTQSISKVPLLGDIPL 568
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424
+G LFR++R + + + + P +V+ A
Sbjct: 569 IGGLFRSTRDSHVKRNLMVFLRPTVVRDGAG 599
>gi|325498531|gb|EGC96390.1| type II secretion protein GspD [Escherichia fergusonii ECD227]
Length = 686
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|193734249|gb|ACF19898.1| PilQ [Kingella kingae]
Length = 700
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 58/271 (21%), Positives = 100/271 (36%), Gaps = 26/271 (9%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------ 219
NQ +++++ L++ + QV ++ I E + + +G +
Sbjct: 422 TDNQSVIQKFERLIDELDVPAK-QVMVEARIVEAADGVSRSLGVKFGARRNGATSWGGDW 480
Query: 220 -----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
+S +F + S SV + L A+E
Sbjct: 481 NNSIALNNRSTNSGTSTGGVAFNPNVNLPVASATSSISVIHSWAAGALGLELSAMETENL 540
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+T++ P + + A G Q Y SS G +S D + L TP + +I
Sbjct: 541 TKTISTPRVLTQDRKEAEIRQGTQIPYT-TRSSDGDSSTAFKDAVLSLKVTPRITPDSKI 599
Query: 329 GLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
L I EP VNA P R T + G T+V+ G+ ++ + +PL
Sbjct: 600 ILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQMANNVSKVPL 659
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFL 418
L IP+LG LF++ +R E+ TP +
Sbjct: 660 LGDIPVLGNLFKSRSRSRSRNELLFFITPRI 690
>gi|189351753|ref|YP_001947381.1| type IV pilus assembly protein [Burkholderia multivorans ATCC
17616]
gi|189335775|dbj|BAG44845.1| type IV pilus assembly protein [Burkholderia multivorans ATCC
17616]
Length = 528
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 34/298 (11%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196
+Q L Q ++ +++ NLL + QV
Sbjct: 203 ARAQDVQRLLAGATGQRLLSKRGAAAADARTNLLFVTDLAPRIAQIADLIAALDRPSRQV 262
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGG 243
++ I E + + +G + ++ + AA F +
Sbjct: 263 RIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAGASPAGARTALDLAARPLAGFDAATA 322
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F++ + L ALE + ++ P + A G + Y+ G
Sbjct: 323 GFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ-AKVGNG 381
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
T V + L P + GR+ L + +V++ +G P+ + T VE+
Sbjct: 382 VTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVD 439
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V
Sbjct: 440 DGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPTIVSA 497
>gi|315297663|gb|EFU56940.1| general secretion pathway protein D [Escherichia coli MS 16-3]
Length = 681
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627
>gi|254787478|ref|YP_003074907.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901]
gi|237686656|gb|ACR13920.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901]
Length = 727
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 115/303 (37%), Gaps = 43/303 (14%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+ +A+ T + K++++ ++I QV ++ I D K++G
Sbjct: 422 SERGQAIVDERTNSIILTDTEEKIDQFKQLIDRIDIPVR-QVMIEARIVVANSDFRKELG 480
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVS---------------------------------- 240
F+ + S S S +F G S
Sbjct: 481 FRIAGDAVESSKSGSHIHEFTGSLDSVYADETSITGAFVDSDGDGTADRAHTFPQNSFVD 540
Query: 241 -----EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
G + + + F L AL+ + +++P + Q AS SG +
Sbjct: 541 LGVFNPTGSLAWNVISNNFMIGMELSALQDSGFAEIVSQPKVITGDKQQASIQSGTSVPF 600
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
+ S+S G T ++ D + L TP + RI + E+ + + +P +
Sbjct: 601 QEESASGGTT-ISFKDVVLRLDVTPQITPDNRIIMD--LEILQDSVTGYESGVPIIDITH 657
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
DT+V + G T+VL G+ + ++ + +PLL IP+LG LFR ++ E+ I T
Sbjct: 658 LDTSVLVADGDTVVLGGIYATEQRKGQSKVPLLGDIPLLGRLFRYDISQEDKRELLIFIT 717
Query: 416 PFL 418
P +
Sbjct: 718 PRI 720
>gi|254038140|ref|ZP_04872198.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
gi|226839764|gb|EEH71785.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
gi|323971766|gb|EGB66992.1| general secretion pathway protein D [Escherichia coli TA007]
Length = 686
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDAN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|221201610|ref|ZP_03574648.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M]
gi|221207315|ref|ZP_03580325.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2]
gi|221172903|gb|EEE05340.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2]
gi|221178426|gb|EEE10835.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M]
Length = 571
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 34/298 (11%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196
+Q L Q ++ +++ NLL + QV
Sbjct: 246 ARAQDVQRLLAGATGQRLLSKRGAAAADARTNLLFVTDLAPRIAQIADLIAALDRPSRQV 305
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGG 243
++ I E + + +G + ++ + AA F +
Sbjct: 306 RIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAAASAAGPRTALDLAARPLAGFDAATA 365
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F++ + L ALE + ++ P + A G + Y+ G
Sbjct: 366 GFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ-AKVGNG 424
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
T V + L P + GR+ L + +V++ +G P+ + T VE+
Sbjct: 425 VTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVD 482
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V
Sbjct: 483 DGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPTIVSA 540
>gi|172059384|ref|YP_001807036.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6]
gi|171991901|gb|ACB62820.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6]
Length = 553
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 58/295 (19%), Positives = 109/295 (36%), Gaps = 34/295 (11%)
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
+ L Q ++ +++ NLL + QV
Sbjct: 229 RALDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRIVQIAGLIDAIDRPSRQVR 288
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGD 244
++ I E + + +G + ++ P+ AA G F +
Sbjct: 289 IEARIVEGEQGFSRNLGARIALRAQGRAPTADGAASATDTRNALDLAARPLGGFEAATAG 348
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
F++ + L ALE + ++ P + A G + Y+ G
Sbjct: 349 FTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQGSELPYQ-AKVGNGV 407
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P + GR+ L + +V++ IG P+ + T VE+ +
Sbjct: 408 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEN 465
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V
Sbjct: 466 GGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSELVVFITPTVV 520
>gi|332973070|gb|EGK11007.1| type IV pilus biogenesis protein PilQ [Kingella kingae ATCC 23330]
Length = 700
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 58/271 (21%), Positives = 100/271 (36%), Gaps = 26/271 (9%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------ 219
NQ +++++ L++ + QV ++ I E + + +G +
Sbjct: 422 TDNQSVIQKFERLIDELDVPAK-QVMVEARIVEAADGVSRSLGVKFGARRNGATSWGGDW 480
Query: 220 -----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
+S +F + S SV + L A+E
Sbjct: 481 NNSIALNNRSTNSGTSTGGVAFNPNVNLPVASATSSISVIHSWAAGALGLELSAMETENL 540
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+T++ P + + A G Q Y SS G +S D + L TP + +I
Sbjct: 541 TKTISTPRVLTQDRKEAEIRQGTQIPYT-TRSSDGDSSTAFKDAVLSLKVTPRITPDSKI 599
Query: 329 GLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
L I EP VNA P R T + G T+V+ G+ ++ + +PL
Sbjct: 600 ILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQMANNVSKVPL 659
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFL 418
L IP+LG LF++ +R E+ TP +
Sbjct: 660 LGDIPVLGNLFKSRSRSRSRNELLFFITPRI 690
>gi|323966493|gb|EGB61926.1| general secretion pathway protein D [Escherichia coli M863]
gi|327251745|gb|EGE63431.1| general secretion pathway protein D [Escherichia coli STEC_7v]
Length = 686
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|301326853|ref|ZP_07220153.1| general secretion pathway protein D [Escherichia coli MS 78-1]
gi|300846528|gb|EFK74288.1| general secretion pathway protein D [Escherichia coli MS 78-1]
Length = 686
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|110643200|ref|YP_670930.1| type II secretion protein GspD [Escherichia coli 536]
gi|194436907|ref|ZP_03069007.1| general secretion pathway protein GspD [Escherichia coli 101-1]
gi|218550223|ref|YP_002384014.1| general secretion pathway protein D [Escherichia fergusonii ATCC
35469]
gi|218555536|ref|YP_002388449.1| general secretion pathway protein D [Escherichia coli IAI1]
gi|218696673|ref|YP_002404340.1| general secretion pathway protein D precursor [Escherichia coli
55989]
gi|254162916|ref|YP_003046024.1| type II secretion protein GspD [Escherichia coli B str. REL606]
gi|291284343|ref|YP_003501161.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
CB9615]
gi|300931844|ref|ZP_07147141.1| general secretion pathway protein D [Escherichia coli MS 187-1]
gi|300950837|ref|ZP_07164722.1| general secretion pathway protein D [Escherichia coli MS 116-1]
gi|300958340|ref|ZP_07170482.1| general secretion pathway protein D [Escherichia coli MS 175-1]
gi|110344792|gb|ABG71029.1| hypothetical type II secretion protein GspD [Escherichia coli 536]
gi|194424389|gb|EDX40376.1| general secretion pathway protein GspD [Escherichia coli 101-1]
gi|218353405|emb|CAU99456.1| general secretion pathway protein D precursor [Escherichia coli
55989]
gi|218357764|emb|CAQ90408.1| general secretion pathway protein D precursor [Escherichia
fergusonii ATCC 35469]
gi|218362304|emb|CAQ99925.1| general secretion pathway protein D precursor [Escherichia coli
IAI1]
gi|242378520|emb|CAQ33305.1| pulD [Escherichia coli BL21(DE3)]
gi|253974817|gb|ACT40488.1| GspD, hypothetical type II secretion protein [Escherichia coli B
str. REL606]
gi|253978972|gb|ACT44642.1| GspD, hypothetical type II secretion protein [Escherichia coli
BL21(DE3)]
gi|284922988|emb|CBG36080.1| type II secretion system protein D [Escherichia coli 042]
gi|290764216|gb|ADD58177.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
CB9615]
gi|300314983|gb|EFJ64767.1| general secretion pathway protein D [Escherichia coli MS 175-1]
gi|300449873|gb|EFK13493.1| general secretion pathway protein D [Escherichia coli MS 116-1]
gi|300460267|gb|EFK23760.1| general secretion pathway protein D [Escherichia coli MS 187-1]
gi|320656346|gb|EFX24253.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320666867|gb|EFX33843.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
LSU-61]
gi|324114991|gb|EGC08956.1| general secretion pathway protein D [Escherichia fergusonii B253]
gi|332344919|gb|AEE58253.1| general secretion pathway protein GspD [Escherichia coli UMNK88]
Length = 686
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|320661717|gb|EFX29125.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
USDA 5905]
Length = 686
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|293416407|ref|ZP_06659046.1| general secretion pathway protein D [Escherichia coli B185]
gi|291431763|gb|EFF04746.1| general secretion pathway protein D [Escherichia coli B185]
Length = 686
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGANNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGHLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|254482717|ref|ZP_05095955.1| type IV pilus secretin PilQ subfamily, putative [marine gamma
proteobacterium HTCC2148]
gi|214037076|gb|EEB77745.1| type IV pilus secretin PilQ subfamily, putative [marine gamma
proteobacterium HTCC2148]
Length = 692
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 57/296 (19%), Positives = 109/296 (36%), Gaps = 32/296 (10%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
I V + T + ++++ ++I QV ++ I + D+ +
Sbjct: 393 ISQRGSVVVDARTNSLIITDTAAKLAEIRELIEQVDIPVR-QVMIESRIVIAQSDLTHSL 451
Query: 214 GFQHSITGSSSGPSKSFAADFGGK---------------------------FVSEGGDFS 246
G + +A + V+ F+
Sbjct: 452 GIEWGGGYIDDVNGNILSASGDAQNVIGLNNSIINGETPSVSYPGALLVDLGVASTSGFA 511
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ + + ALE A +++P + Q A+ SG + Y+ ++S GATS
Sbjct: 512 LGFTSNDLFLTAEISALEAAGQGEVVSQPKVITGDKQQATIKSGTEIPYQEAAAS-GATS 570
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELP 363
+ + + L TP + R+ L + V + V G +PS + T V +
Sbjct: 571 TSFKEAVLELEVTPNITPDDRVMLDLNVKQDSVGDLVPSGQGGFIPSIDTTEITTQVLVG 630
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G T+VL G+ K + + +P +P +GA FR+ N +TE I TP ++
Sbjct: 631 NGETVVLGGVFKTEDLETVNKVPFFGDLPYVGAFFRSESRNNTKTETLIFITPRIL 686
>gi|188990354|ref|YP_001902364.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris
pv. campestris str. B100]
gi|167732114|emb|CAP50306.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris
pv. campestris]
Length = 626
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 47/261 (18%), Positives = 100/261 (38%), Gaps = 27/261 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231
DQV ++ I + +G + + G+ +
Sbjct: 364 RPVDQVLIEGRIVIATDTFARDLGAKFGLGGTHTYGDNVATIGSGATGGGVAAGRGLNVN 423
Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ + + F+ + L AL++ ++ P + + + G
Sbjct: 424 LPTGAFTSGATAPSLAYTLLGSNFNLDLELSALQQEGRGEVISNPRIVTSNQREGVIKQG 483
Query: 291 GQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGV 343
+ Y T++ T +V + + L TPT+ + R+ L + EV E +
Sbjct: 484 REIGYVTITGGTAGQAATPNVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVDELIELP 543
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
N G +PS R+ +T V + G T+V+ G+ + + +P L +P LG LF++
Sbjct: 544 NYGTVPSINRREINTAVLVDDGQTVVIGGVYEFSDRSSVNKVPFLGDVPFLGNLFKSRGR 603
Query: 404 NREETEIFIAATPFLVKPVAM 424
++++ E+ I TP +++ +
Sbjct: 604 SKDKAELLIFITPKVLRVASA 624
>gi|83943483|ref|ZP_00955942.1| general secretion pathway protein D [Sulfitobacter sp. EE-36]
gi|83845715|gb|EAP83593.1| general secretion pathway protein D [Sulfitobacter sp. EE-36]
Length = 631
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 73/407 (17%), Positives = 153/407 (37%), Gaps = 29/407 (7%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA-DVVVHSPRTMYLFGKN 93
+ I + G G ++S+ ++L + A DV +
Sbjct: 188 SAILEVLGQAGTGARLSVDAGSNLLLVRGTPEDIAEIRSLAIAMDVAPRKDPR-----EA 242
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
V L D + + ++ D + + + + V L+ +V
Sbjct: 243 VATTVFNLQYGDAQIIADIIKGTVGDATDITNAVAADVGAQSAEATSDGQFVPLNRVV-- 300
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D+ ET ++++ L++ QV ++ I EV ++ +++
Sbjct: 301 APDAVNITASVETNSIVVRGTAAQVQEVGQLVHALDVRRP-QVMIEAAIVEVSGEVAERL 359
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------------LDRFSFETVL 260
G Q + + + + + G VS G + GV F ++
Sbjct: 360 GVQLGLGPNVPNGAIAASNFSNGGGVSLGSVLAAVGVPAGSALSTGLTLGAGGNDFGILV 419
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDYGV 314
AL ++T+ R L+ P++T + + A+ G + +++T T++ D G+
Sbjct: 420 QALSQSTSARLLSTPSVTTLDNEPATIVVGQNVPFRTGSFATDGNTATPFTTIERRDVGI 479
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
++ P + + G + L I+ E+S V R +TTV + GT+VL GL
Sbjct: 480 TMNVVPRITAGGVVQLVIEQEISSLTNANVEGAADLVTNRRVINTTVMADNRGTVVLGGL 539
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ DD +P L +P++G LF++ + +F+ P +++
Sbjct: 540 ITDDRINGSSKVPGLGDLPVVGELFKSRNARNTQRTLFVFLRPTILR 586
>gi|163781944|ref|ZP_02176944.1| putative type II secretion system protein [Hydrogenivirga sp.
128-5-R1-1]
gi|159883164|gb|EDP76668.1| putative type II secretion system protein [Hydrogenivirga sp.
128-5-R1-1]
Length = 518
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 19/244 (7%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV ++ I E+ + Q G S + + + GG FS+ V
Sbjct: 273 KQVLIEAKIVEIALSDVFQYGIDWSTFFRDVFGTGANVTLSQTLSIPTGGFFSLNVV--S 330
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------ 307
F T+++AL + TL+ P + +GQ+A +G + + T +
Sbjct: 331 SDFSTLVNALATYGKVYTLSNPRIMVSNGQTALIATGIVTPFFERQAVTITGTTTTQIQE 390
Query: 308 ----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKA 356
T GV+L TP + G I + I + V G + P +++
Sbjct: 391 NIVKTNVLEGVLLGVTPYIDDNGSIVMNIIPVATRLEGSKTLEVNGQVLAEAPILNIKET 450
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T V + +G +V+ GL+ D + +P L IP+LG LF++ R +E+ E+ I P
Sbjct: 451 GTIVRVRNGELVVIGGLIGDVRSVQERKVPGLGDIPVLGYLFKSKRTVKEKRELIIFLRP 510
Query: 417 FLVK 420
++
Sbjct: 511 RIID 514
>gi|167045577|gb|ABZ10227.1| putative bacterial type II and III secretion system protein
[uncultured marine crenarchaeote HF4000_APKG10I20]
Length = 648
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 52/250 (20%), Positives = 96/250 (38%), Gaps = 18/250 (7%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------- 234
+ +L+I+ QV ++ I E+ + +++G + G
Sbjct: 399 IKILDISTP-QVLIEAKIVEISKTFSQELGISWGLVNPEPGFPTVTGNSTFDTQFLVDLR 457
Query: 235 -----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
V+ + + L ALE++ R ++ P +T + A S
Sbjct: 458 PTVDIATGNVAGFDSLIQGFLPGNIALNVRLEALEKSGKGRVISSPRVTTADNKEARVLS 517
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
G Y+ S S+ + + L TP V S I + I + A +P
Sbjct: 518 GRDIPYQVNSVEG--NSIQFVNAELSLTVTPHVTSDNSIYMTIDATKNAADFAQLAAGIP 575
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ ++ T V + +G T VLAG+ + + K+ +P SK+P++G LFR E
Sbjct: 576 TITRKEMHTEVLVGNGETTVLAGIYESTSTENKKAVPWFSKLPLVGFLFRAFDDKDTINE 635
Query: 410 IFIAATPFLV 419
+ + TP +V
Sbjct: 636 LLVFITPTIV 645
>gi|225848499|ref|YP_002728662.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643373|gb|ACN98423.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1]
Length = 604
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 24/252 (9%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------------SKSFA 231
Q++++ I ++ +K +G Q S+ ++A
Sbjct: 351 RPYQISIEARIVQISSKNVKDLGIQWGGLASNIDNNNTKIIAGTNSTSYLANYRPGSAYA 410
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
DF G FS+ +L + L AL+ + L++P++ I G++A +
Sbjct: 411 VDFPAVQSKIPGGFSLGFILGGTQNFLDIRLSALQSIGKSKILSKPSVITIDGETAEISQ 470
Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y T ++ G T SV+ + L+ TP + G I + + P
Sbjct: 471 GYEIPYTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLLLG 530
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P + + + V G +V+ G+L+ G+P L IPILG LF+ +
Sbjct: 531 NPPIQTKTVTSKVVAKDGSVVVIGGILEKTEDTQTSGVPGLMNIPILGNLFKENFKQDTS 590
Query: 408 TEIFIAATPFLV 419
TE+ I +P +V
Sbjct: 591 TELLIFLSPKIV 602
>gi|22127802|ref|NP_671225.1| putative outer membrane porin HofQ [Yersinia pestis KIM 10]
gi|45440014|ref|NP_991553.1| putative outer membrane porin HofQ [Yersinia pestis biovar Microtus
str. 91001]
gi|108814075|ref|YP_649842.1| putative outer membrane porin HofQ [Yersinia pestis Nepal516]
gi|150260832|ref|ZP_01917560.1| putative membrane transport protein [Yersinia pestis CA88-4125]
gi|218927361|ref|YP_002345236.1| putative outer membrane porin HofQ [Yersinia pestis CO92]
gi|229310101|ref|YP_072232.2| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 32953]
gi|229358042|ref|YP_653226.2| putative outer membrane porin HofQ [Yersinia pestis Antiqua]
gi|294502239|ref|YP_003566301.1| putative membrane transport protein [Yersinia pestis Z176003]
gi|21960932|gb|AAM87476.1|AE013997_11 putative transport portein [Yersinia pestis KIM 10]
gi|45434869|gb|AAS60430.1| putative membrane transport protein [Yersinia pestis biovar
Microtus str. 91001]
gi|108777723|gb|ABG20242.1| membrane transport protein [Yersinia pestis Nepal516]
gi|115345972|emb|CAL18836.1| putative membrane transport protein [Yersinia pestis CO92]
gi|149290240|gb|EDM40317.1| putative membrane transport protein [Yersinia pestis CA88-4125]
gi|262364270|gb|ACY60827.1| putative membrane transport protein [Yersinia pestis D182038]
gi|294352698|gb|ADE63039.1| putative membrane transport protein [Yersinia pestis Z176003]
Length = 374
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 59/233 (25%), Positives = 96/233 (41%), Gaps = 6/233 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GV 250
QV L I + + L+++G + G G + DF SV
Sbjct: 143 QQVQLSAHIVTISSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVAR 201
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ E L ALE+ + +A P L Q+AS G Y A ++
Sbjct: 202 IGGRLLELELSALEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 261
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
+ + + TP +L G+I L ++ + P I + +M ++ T V + G TI
Sbjct: 262 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 321
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
VL G+ + +Q +PLL+ IP+LGA+FR + E+ I TP L+
Sbjct: 322 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 374
>gi|222109862|ref|YP_002552126.1| general secretion pathway protein d [Acidovorax ebreus TPSY]
gi|221729306|gb|ACM32126.1| general secretion pathway protein D [Acidovorax ebreus TPSY]
Length = 781
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 53/270 (19%), Positives = 102/270 (37%), Gaps = 34/270 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
QV ++ I EV + + + G Q + G + + D ++
Sbjct: 431 GRRAQVLIESLIVEVSANKVAEFGIQWQGVLGNYGSTLGVLGNNSSVAGRNILDLALAAA 490
Query: 251 LDRFS------------------------FETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ + + LE L+ P L + + A
Sbjct: 491 TGNVTSIASAKPAAGMNLAVAPRINGKYYLGALANFLENTGDANVLSTPNLLTLDNEEAQ 550
Query: 287 FTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
G + T S + T+V D G++L P + G + L + EVS
Sbjct: 551 IIIGNNVPFVTGSYANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTVKLTMYQEVS 610
Query: 338 EPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ + + PS R ++TV + G IV+ GLL+D+ ++ +P++ +P++G
Sbjct: 611 KVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALNQDKVPVMGDLPVVGG 670
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426
LFRN + R++T + + P +++ A D
Sbjct: 671 LFRNEKRTRQKTNLMVFLRPMVIRDSAASD 700
>gi|157157281|ref|YP_001464424.1| general secretion pathway protein D [Escherichia coli E24377A]
gi|188495193|ref|ZP_03002463.1| general secretion pathway protein D [Escherichia coli 53638]
gi|191169103|ref|ZP_03030864.1| general secretion pathway protein GspD [Escherichia coli B7A]
gi|193062082|ref|ZP_03043178.1| general secretion pathway protein GspD [Escherichia coli E22]
gi|260869724|ref|YP_003236126.1| putative type II secretion protein GspD [Escherichia coli O111:H-
str. 11128]
gi|300824048|ref|ZP_07104169.1| general secretion pathway protein D [Escherichia coli MS 119-7]
gi|300905916|ref|ZP_07123648.1| general secretion pathway protein D [Escherichia coli MS 84-1]
gi|301304138|ref|ZP_07210254.1| general secretion pathway protein D [Escherichia coli MS 124-1]
gi|307310403|ref|ZP_07590051.1| general secretion pathway protein D [Escherichia coli W]
gi|309794068|ref|ZP_07688493.1| general secretion pathway protein D [Escherichia coli MS 145-7]
gi|331669777|ref|ZP_08370622.1| general secretion pathway protein D [Escherichia coli TA271]
gi|331679035|ref|ZP_08379707.1| general secretion pathway protein D [Escherichia coli H591]
gi|157079311|gb|ABV19019.1| general secretion pathway protein D [Escherichia coli E24377A]
gi|188490392|gb|EDU65495.1| general secretion pathway protein D [Escherichia coli 53638]
gi|190900855|gb|EDV60643.1| general secretion pathway protein GspD [Escherichia coli B7A]
gi|192932302|gb|EDV84900.1| general secretion pathway protein GspD [Escherichia coli E22]
gi|257766080|dbj|BAI37575.1| predicted type II secretion protein GspD [Escherichia coli O111:H-
str. 11128]
gi|300402269|gb|EFJ85807.1| general secretion pathway protein D [Escherichia coli MS 84-1]
gi|300523438|gb|EFK44507.1| general secretion pathway protein D [Escherichia coli MS 119-7]
gi|300840551|gb|EFK68311.1| general secretion pathway protein D [Escherichia coli MS 124-1]
gi|306909298|gb|EFN39793.1| general secretion pathway protein D [Escherichia coli W]
gi|308122475|gb|EFO59737.1| general secretion pathway protein D [Escherichia coli MS 145-7]
gi|309703398|emb|CBJ02737.1| type II secretion system protein D [Escherichia coli ETEC H10407]
gi|315062282|gb|ADT76609.1| type II secretion system lipoprotein D [Escherichia coli W]
gi|315253339|gb|EFU33307.1| general secretion pathway protein D [Escherichia coli MS 85-1]
gi|323178670|gb|EFZ64246.1| general secretion pathway protein D [Escherichia coli 1180]
gi|323377134|gb|ADX49402.1| general secretion pathway protein D [Escherichia coli KO11]
gi|331062690|gb|EGI34604.1| general secretion pathway protein D [Escherichia coli TA271]
gi|331073100|gb|EGI44423.1| general secretion pathway protein D [Escherichia coli H591]
Length = 686
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|171060077|ref|YP_001792426.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6]
gi|170777522|gb|ACB35661.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6]
Length = 726
Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats.
Identities = 51/299 (17%), Positives = 96/299 (32%), Gaps = 45/299 (15%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSI-- 219
+ + S ++V ++ QV ++ I E + +G +
Sbjct: 421 AYESRTNQLFVSDLPSKLEEVAQMIAKIDVPVRQVMIEARIVEAEDSFGRTLGVKLGATD 480
Query: 220 ----TGSSSGPSKSFA-----------------------------------ADFGGKFVS 240
G G + G +
Sbjct: 481 LRGINGGVPGWGGNNTRIALGGNYSSIGDTTLQQATGSIYANSQFVNLPANTSSLGGATA 540
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
S+ G L ALE + ++ P + A G + Y+T +
Sbjct: 541 ATFALSLFGASSNRFLNLELSALEAEGKGKLVSSPRVVTADQVKALIEQGTELPYQTGGN 600
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
A S+ + L TP + G I + +V++ +G + + T V
Sbjct: 601 QQTAPSIAFRKATLKLEVTPQITPEGNIIMD--VDVNKDSVGQQTLAGFAINTKHVKTQV 658
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +GGT+V+ G+ + + +P+L IP LG LFRN +TE+ + TP ++
Sbjct: 659 LVENGGTVVIGGIFETTETESVNKVPVLGDIPFLGVLFRNKTRVANKTELLVFLTPKVI 717
>gi|209920436|ref|YP_002294520.1| putative type II secretion protein [Escherichia coli SE11]
gi|256019113|ref|ZP_05432978.1| putative type II secretion protein [Shigella sp. D9]
gi|332280218|ref|ZP_08392631.1| general secretion pathway protein D [Shigella sp. D9]
gi|209913695|dbj|BAG78769.1| putative type II secretion protein [Escherichia coli SE11]
gi|320201874|gb|EFW76449.1| General secretion pathway protein D [Escherichia coli EC4100B]
gi|332102570|gb|EGJ05916.1| general secretion pathway protein D [Shigella sp. D9]
Length = 686
Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|51243965|ref|YP_063849.1| type II protein secretion protein [Desulfotalea psychrophila LSv54]
gi|50875002|emb|CAG34842.1| related to type II protein secretion protein [Desulfotalea
psychrophila LSv54]
Length = 559
Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats.
Identities = 58/304 (19%), Positives = 107/304 (35%), Gaps = 36/304 (11%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-------AGEDQVTLKVTIAE 204
++ ++R ++ S+ + V++ L+ Q+ + I E
Sbjct: 256 QSPTATRRYAAGGAMYIIDKPIGLITVSAPRNVLDRLDAYFFSLKKELYKQIAIDAKIIE 315
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRFSFETVLH 261
V IG S G ++G + G F L+ F ++
Sbjct: 316 VTLSDASSIGIDWSNVLGGDGFKLGGKVNYGDATDAIFHNGSGFLDTITLESTDFHVLIK 375
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------------SVTT 309
AL + L+ P L+ ++GQ A + G Y + + T +
Sbjct: 376 ALNEQGDTKVLSNPKLSVMNGQPALISVGRSITYISEIEADRDTSSIGTSTITYTTETDS 435
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------------GVNAGDMPSYRVRK 355
G+ L T TVL I + + SE V + +P VR+
Sbjct: 436 LLSGLGLGITATVLDDSEIIMNLVPVTSELVPFKDGEEIEYRQVGDDGASVGLPVLNVRE 495
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
TTV + G T+++ GL+ + +P+L IP L LF ++++ E+ I
Sbjct: 496 MSTTVRVKDGETLIIGGLISESNSTTGSSVPILGSIPGLKYLFGYEGKSKQKKELVILIQ 555
Query: 416 PFLV 419
P ++
Sbjct: 556 PRII 559
>gi|193067486|ref|ZP_03048454.1| general secretion pathway protein GspD [Escherichia coli E110019]
gi|192959443|gb|EDV89878.1| general secretion pathway protein GspD [Escherichia coli E110019]
Length = 686
Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|157162438|ref|YP_001459756.1| general secretion pathway protein D [Escherichia coli HS]
gi|157068118|gb|ABV07373.1| general secretion pathway protein D [Escherichia coli HS]
Length = 686
Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|254293816|ref|YP_003059839.1| general secretion pathway protein D [Hirschia baltica ATCC 49814]
gi|254042347|gb|ACT59142.1| general secretion pathway protein D [Hirschia baltica ATCC 49814]
Length = 660
Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats.
Identities = 58/291 (19%), Positives = 112/291 (38%), Gaps = 44/291 (15%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKF 238
++V+ L+ QV ++ I E+ + +++G + ++GS S + A +F
Sbjct: 339 ERVVEELDQR-RSQVLVEAIIVELSDNAARELGLEFVLSGSGSSATPFAATNFTRSTTNV 397
Query: 239 VSEGGDFSVKG--------------------------------VLDRFSFETVLHALERA 266
+S G ++ D F +++A++
Sbjct: 398 LSLAGALALDSDTVGEETVSSLRSAAISSLLGSAGGLLGIGGQSSDGTIFGAIINAVDSD 457
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPT 321
L+ P L + + AS T G + T ++S +V GV L P
Sbjct: 458 ITSNVLSTPHLLTMDNEKASITVGQEVPITTGEALGTNNSNPFRTVERKPLGVTLEVEPQ 517
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ I L ++ EVS ++ D R+ +TT+ G +VL GL++++
Sbjct: 518 IGEGDSIKLNLRQEVSSIFDSIDGTDF-ITNNREINTTILADDGEIVVLGGLIQEEETLN 576
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
+PLL IP +G LF + ++ T + + P +V+ + R D
Sbjct: 577 ISKVPLLGDIPGVGRLFSSEGTTKKRTNLMVFLKPTIVR--DAETMQRATD 625
>gi|76809042|ref|YP_335094.1| type II/III secretion system protein [Burkholderia pseudomallei
1710b]
gi|76578495|gb|ABA47970.1| type II/III secretion system protein [Burkholderia pseudomallei
1710b]
Length = 575
Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 148 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 206
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 207 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 263
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 264 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 323
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 324 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 383
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 384 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 443
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 444 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 500
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 501 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 560
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 561 SELVVYITPTVV 572
>gi|323978963|gb|EGB74043.1| general secretion pathway protein D [Escherichia coli TW10509]
Length = 686
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 57/320 (17%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSE---------------------- 241
G Q + + + ++ G +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATIINPDTN 434
Query: 242 ----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|262380438|ref|ZP_06073592.1| general secretion pathway protein D [Acinetobacter radioresistens
SH164]
gi|262297884|gb|EEY85799.1| general secretion pathway protein D [Acinetobacter radioresistens
SH164]
Length = 718
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 51/275 (18%), Positives = 102/275 (37%), Gaps = 33/275 (12%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228
++++LL++A + QV ++ I D K++G + I +
Sbjct: 445 RMIDLLDVAVK-QVMVEARIVRASTDFTKEMGVKWGILSQGITRNNSLLVGGSETTLWNL 503
Query: 229 ---------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
+ D G L F + L AL+ ++
Sbjct: 504 RDPDDEGKYTIERPQNLNVDLGVTAPGASRIAFGLISLSDFMLDLELSALQADGYGEVIS 563
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
P + Q A SG Q Y++ ++ D + L+ TP++ G+I +
Sbjct: 564 TPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQML 623
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ S+ + + +T V + +G T+VL G+ + + + + +P+L +
Sbjct: 624 LNIT-SDTPGNPTPTGQIAINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGDL 682
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
P +G LFR + + E+ I TP +V A +
Sbjct: 683 PGVGRLFRRDAKSDNKRELLIFVTPRIVNDSATGN 717
>gi|254180385|ref|ZP_04886983.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655]
gi|254190347|ref|ZP_04896855.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur
52237]
gi|254261204|ref|ZP_04952258.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a]
gi|157938023|gb|EDO93693.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur
52237]
gi|184210924|gb|EDU07967.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655]
gi|254219893|gb|EET09277.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a]
Length = 445
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 18 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 76
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 77 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 133
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 134 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 193
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 194 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 253
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 254 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 313
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 314 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 370
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 371 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 430
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 431 SELVVYITPTVV 442
>gi|90020990|ref|YP_526817.1| Type II secretory pathway component PulD-like protein
[Saccharophagus degradans 2-40]
gi|89950590|gb|ABD80605.1| type II and III secretion system protein [Saccharophagus degradans
2-40]
Length = 546
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 52/258 (20%), Positives = 108/258 (41%), Gaps = 23/258 (8%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
++ + A + QV ++ TI EV Q G S+ + + A V+
Sbjct: 272 LSEIMFASQRQVLIEATIVEVTLSERYQAGIDWSVLQQNVADGVTRTATQDVLDVTLQDP 331
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA-----------SFTSGGQH 293
+ + + + AL+ + ++ P + ++ Q+A + +
Sbjct: 332 VFTITHVGK-NLSATVKALDTFGDVSVMSSPKVMTLNNQTALLKVVDNLVYFTVDVNIET 390
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIG 342
S++T T V T G V+ TP + G + L I+ +S
Sbjct: 391 NESGPSTTTFETEVNTVPIGFVMSVTPFINEFGYVTLNIRPTISRVIGLKRDPNPALAQV 450
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
++P +VR+ ++ +++P G ++ GL++D+ + G+P LSKIP++G LF+ +
Sbjct: 451 NVVNEIPEIQVREVESVLKIPDGEVAIIGGLMQDEQDNTEHGVPGLSKIPLVGGLFKYTD 510
Query: 403 FNREETEIFIAATPFLVK 420
+++E+ I P +V
Sbjct: 511 DKVKKSELVIFIKPIVVD 528
>gi|134096276|ref|YP_001101351.1| fimbrial assembly protein PilQ [Herminiimonas arsenicoxydans]
gi|133740179|emb|CAL63230.1| Putative type IV pilus biogenesis secretin PilQ [Herminiimonas
arsenicoxydans]
Length = 697
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 49/257 (19%), Positives = 92/257 (35%), Gaps = 32/257 (12%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------------------GS 222
QV ++ I E +G + +
Sbjct: 437 ASRQVMIEARIVEADDKFSSSLGVKLGFGLQRGRNNILEVGGQQNADASAPGLNLTNLQT 496
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+G + + A ++ L ALE + ++ P +
Sbjct: 497 VNGNAVNLPASPLNGNTPGSVALTLFNAAATRFIGLELSALEADGKGKIISSPRVITADQ 556
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
A G + Y+ +SS GATSV+ + L TP + G + L +V++ +G
Sbjct: 557 LKALIEQGTELPYQQATSS-GATSVSFRKANLRLEVTPQITPDGNVILD--VDVNKDSVG 613
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
V + + T V + +GGT+V+ G+ + + +P IP+LG LF+ +
Sbjct: 614 VETRSGFAIDTKHVKTQVLIDNGGTVVIGGIFQQTERDSVSKVPFFGDIPVLGNLFKTTG 673
Query: 403 FNREETEIFIAATPFLV 419
++TE+ I TP ++
Sbjct: 674 RTNDKTELLIFLTPKIL 690
>gi|254357308|ref|ZP_04973582.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280]
gi|148026372|gb|EDK84457.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280]
Length = 552
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 125 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 183
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 184 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 240
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 241 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 300
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 301 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 360
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 361 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 420
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 421 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 477
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 478 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 537
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 538 SELVVYITPTVV 549
>gi|221213453|ref|ZP_03586428.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1]
gi|221166905|gb|EED99376.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1]
Length = 571
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 34/298 (11%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196
+Q L Q ++ +++ NLL + QV
Sbjct: 246 ARAQEVQRLLAGATGQRLLSKRGAAAADARTNLLFVTDLAPRIAQIADLIAALDRPSRQV 305
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGG 243
++ I E + + +G + ++ + AA F +
Sbjct: 306 RIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAAASPAGARTALDLAARPLAGFDAATA 365
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F++ + L ALE + ++ P + A G + Y+ G
Sbjct: 366 GFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ-AKVGNG 424
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
T V + L P + GR+ L + +V++ +G P+ + T VE+
Sbjct: 425 VTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVD 482
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V
Sbjct: 483 DGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPTIVSA 540
>gi|239994918|ref|ZP_04715442.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
MshL (pilus type IV) [Alteromonas macleodii ATCC 27126]
Length = 582
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/313 (18%), Positives = 110/313 (35%), Gaps = 44/313 (14%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+ + ++ V + L + K +N + + QV L+ I EV + Q
Sbjct: 250 SPTEGRQVVVSPQAGLVTVRALPSEIAVVKDFLNQSQESLQRQVVLEARIIEVTLNDGYQ 309
Query: 213 IGFQHSITGSSSGPSKSFAADFG------------------------GKFVSEGGDFSVK 248
G + S S +F G G +S
Sbjct: 310 QGVRWDRIASGLTGSVNFGFSGGAIASNFAANTAAGIDPAINAVNGIGNSISTDIGGVST 369
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------ 302
+ R F+ V++ L+ ++ L+ P +T + Q A G + T S++
Sbjct: 370 LRISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSAT 429
Query: 303 -----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348
+T G+ L TP + G + L + V+E +
Sbjct: 430 QTENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLPL 489
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
+R++DT + G +V+ GL++ + + PLL IP +G F+N + +
Sbjct: 490 AQSNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSKR 549
Query: 409 EIFIAATPFLVKP 421
E+ I P +V+P
Sbjct: 550 ELVILIRPSVVQP 562
>gi|218706590|ref|YP_002414109.1| general secretion pathway protein D [Escherichia coli UMN026]
gi|300900296|ref|ZP_07118475.1| general secretion pathway protein D [Escherichia coli MS 198-1]
gi|331648754|ref|ZP_08349842.1| general secretion pathway protein D [Escherichia coli M605]
gi|331664576|ref|ZP_08365482.1| general secretion pathway protein D [Escherichia coli TA143]
gi|218433687|emb|CAR14602.1| general secretion pathway protein D precursor [Escherichia coli
UMN026]
gi|300356186|gb|EFJ72056.1| general secretion pathway protein D [Escherichia coli MS 198-1]
gi|331042501|gb|EGI14643.1| general secretion pathway protein D [Escherichia coli M605]
gi|331058507|gb|EGI30488.1| general secretion pathway protein D [Escherichia coli TA143]
Length = 686
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|53724296|ref|YP_104266.1| type II/III secretion system protein [Burkholderia mallei ATCC
23344]
gi|52427719|gb|AAU48312.1| type II/III secretion system protein [Burkholderia mallei ATCC
23344]
Length = 527
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 100 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 158
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 159 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 215
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 216 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 275
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 276 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 335
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 336 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 395
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 396 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 452
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 453 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 512
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 513 SELVVYITPTVV 524
>gi|167740501|ref|ZP_02413275.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
gi|167826105|ref|ZP_02457576.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
gi|167896189|ref|ZP_02483591.1| type II/III secretion system protein [Burkholderia pseudomallei
7894]
gi|167904571|ref|ZP_02491776.1| type II/III secretion system protein [Burkholderia pseudomallei
NCTC 13177]
gi|167912835|ref|ZP_02499926.1| type II/III secretion system protein [Burkholderia pseudomallei
112]
gi|167920795|ref|ZP_02507886.1| type II/III secretion system protein [Burkholderia pseudomallei
BCC215]
gi|254198490|ref|ZP_04904911.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13]
gi|254201342|ref|ZP_04907706.1| type IV pilus secretin PilQ [Burkholderia mallei FMH]
gi|147747236|gb|EDK54312.1| type IV pilus secretin PilQ [Burkholderia mallei FMH]
gi|169655230|gb|EDS87923.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13]
Length = 457
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 30 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 88
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 89 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 145
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 146 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 205
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 206 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 265
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 266 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 325
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 326 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 382
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 383 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 442
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 443 SELVVYITPTVV 454
>gi|269213782|ref|ZP_06158175.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685]
gi|269145356|gb|EEZ71774.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685]
Length = 327
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 55/269 (20%), Positives = 106/269 (39%), Gaps = 32/269 (11%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
K+++ L++ QV ++ I E + +G + G+ + F + GG
Sbjct: 52 KLIDELDVPA-QQVMIEARIVEATDGFARDLGVKFGYGGTERQTAWGFNSGSGGISAANN 110
Query: 237 ----------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ ++ L + L A E+ + +TLA
Sbjct: 111 GGTGGNIGTSSGRWSVNTNINLPVAAAANSIALVRALSSGALNLELSASEQLSKTKTLAN 170
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRI 332
P + + Q A SG + Y+ S+S T+ T + L TP + G+I + +
Sbjct: 171 PRVLTQNRQEAKIESGTEIPYQDTSTSGNNTTTTTTFKKAVLGLVVTPNITPDGQIIMNV 230
Query: 333 QTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ P V + + DT + +GGT+++ G+ +++ IPLL I
Sbjct: 231 KINKDTPIDCRVKNEATKCIQTKNLDTQAMVENGGTLIVGGIYEEENGNTLTKIPLLGDI 290
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
P++G LF+ + N+ E+ I TP ++
Sbjct: 291 PVIGNLFKTRQNNQSRRELLIFITPRIMD 319
>gi|281180003|dbj|BAI56333.1| putative type II secretion protein [Escherichia coli SE15]
Length = 659
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 289 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 347
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 348 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 407
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 408 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 467
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 468 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 527
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 528 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 585
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 586 KRNLMVFIRPTILRDGMAAD 605
>gi|24371766|ref|NP_715808.1| general secretion pathway protein D [Shewanella oneidensis MR-1]
gi|24345556|gb|AAN53253.1|AE015466_13 general secretion pathway protein D [Shewanella oneidensis MR-1]
Length = 704
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 62/281 (22%), Positives = 106/281 (37%), Gaps = 45/281 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
+ V+N L+I QV ++ I EV G Q + + G
Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 396
Query: 236 -------GKFVSEGGDFSVKG------------------------VLDRFSFETVLHALE 264
G +++ V G + F ++ A+
Sbjct: 397 WQAQDKEGTYITNPSTGEVIGQNPKTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQAVS 456
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFT 319
T LA P++T + Q ASF G + + ++S +V + GV L
Sbjct: 457 ADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 516
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
P + + L I+ EVS S+ R+ TTV SG +VL GL+ +++Q
Sbjct: 517 PQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEEVQ 574
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + +P L IPILG LF++S + + + I P +++
Sbjct: 575 ESIQKVPFLGDIPILGHLFKSSSSKKTKKNLMIFIKPTIIR 615
>gi|118579431|ref|YP_900681.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379]
gi|118502141|gb|ABK98623.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379]
Length = 864
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 17/241 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGK 237
E QV ++ I E + +G + G + + G
Sbjct: 621 EKQVMIEARIVEATSTFTRSLGVNWGVHYTDASGSLLGITQLDTGFGGITTAPPTSGTGD 680
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
S + + + L A A I+ ++ P + ++ + A G Q Y
Sbjct: 681 SAGGNMGISFGALGNGVQLDMRLSAAATAGLIKIISCPKVATLNNKKAKIAQGQQIPYTA 740
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
T + + L TP + + G I + I + V + P+ ++A
Sbjct: 741 SDGDNVETK--FVEAALSLEVTPHINANGTISMNIVAKNDSMGDAVGSSTAPAINTKEAT 798
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T + L G T V+ G+ D G+P L IP +G F+ + + +TE+ + TP
Sbjct: 799 TEMLLRDGETTVIGGIFVDTDNDSDAGVPFLMDIPAIGKFFKTNSKTKTKTELLVFITPR 858
Query: 418 L 418
+
Sbjct: 859 I 859
>gi|1772618|gb|AAC31975.1| HrcC [Erwinia chrysanthemi]
Length = 691
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 68/451 (15%), Positives = 138/451 (30%), Gaps = 40/451 (8%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99
G + I++ N + D + V++ A V + + + + G A +
Sbjct: 158 TGPTEYINLIRNFSQQRETKEDRRKVMIFPLRYASVSDRTIQYRDQRLVI----PGVATI 213
Query: 100 I--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS--NIRVEMVSDTVVL-------H 148
+ L+ + + M + ++ +L
Sbjct: 214 LNELMDGNRNTPAGAAGAGSGIGSDGGMATADGAGGGLDASKSIEMNARSMLARLASRNS 273
Query: 149 GMVRTIQDSQRAV--ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAE 204
G + + + +S + + + + L++ Q V + I +
Sbjct: 274 GAAASASRKKDQLNGRVSADVRNNALLVRDDEKRRDEYQQLIDKIDVPQNLVNIDAIILD 333
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
V R L ++ + + + FVS D F + ALE
Sbjct: 334 VDRTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS-----------DFKRFSADIQALE 382
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+A P++ + Q A +V G L TP V+
Sbjct: 383 GEGTASIVANPSVLTLENQPAVIDFSRTAFITAT--GERVANVQPVTAGTSLQVTPRVVG 440
Query: 325 PGRIG-LRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLK 382
G +++ ++ + + N S R T + +VL G ++
Sbjct: 441 HGSTSSIQLVIDIEDGQVETNTEGTASGVKRGTVSTQALIGENRALVLGGFHVEESGDRD 500
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
+ +PLL IP +G LF + + E TP L+ D+ +DA
Sbjct: 501 KRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSADNRRQLNDAMG 560
Query: 443 FFFNRVNK--IYGPKEASEVEGQNYKGAIGF 471
R +K ++G E + + + + GF
Sbjct: 561 RVAQRNSKTDLFGTVENALRDLASGQTPAGF 591
>gi|53804514|ref|YP_113593.1| general secretion pathway protein D [Methylococcus capsulatus str.
Bath]
gi|53758275|gb|AAU92566.1| general secretion pathway protein D [Methylococcus capsulatus str.
Bath]
Length = 751
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 61/287 (21%), Positives = 113/287 (39%), Gaps = 17/287 (5%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSS---SKKVMNLLNIAGEDQVTLKVTIAEV 205
G ++ + + + + V+ L++ QV + TI E+
Sbjct: 429 GQGASMTQLGNNARVVADPANNALIVIAKPQDWKEIEAVIKALDV-LPLQVLIDATIVEI 487
Query: 206 RRDILKQIGFQHSITGSSSGPSKS-----FAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
Q G + I+ SS + DF S G FS + + + + +L
Sbjct: 488 SLKNDLQYGLKWLISSGSSTEALGSPLAALVKDFINGAASASGGFSYALIANGGNVKVLL 547
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDYGV 314
+ L + + ++ P+L ++ Q A G Q +T GV
Sbjct: 548 NLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTGTTASATIGTTQFNQFQQQQSGV 607
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAG 372
L P V S G + L I +S P +++ R+ + V +P+G T+ L G
Sbjct: 608 TLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKTFQFANREIQSVVAVPNGQTLALGG 667
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L+ D + + G+P L++IP++G +F ++ E TE+ + TP +V
Sbjct: 668 LISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVV 714
>gi|53720777|ref|YP_109763.1| putative secretion system protein [Burkholderia pseudomallei
K96243]
gi|52211191|emb|CAH37180.1| putative secretion system protein [Burkholderia pseudomallei
K96243]
Length = 442
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 15 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 73
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 74 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 130
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 131 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 190
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 191 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 250
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 251 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 310
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 311 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 367
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 368 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 427
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 428 SELVVYITPTVV 439
>gi|332085659|gb|EGI90823.1| putative general secretion pathway protein D domain protein
[Shigella dysenteriae 155-74]
Length = 303
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/247 (21%), Positives = 91/247 (36%), Gaps = 23/247 (9%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD 244
++ I EV+ +G Q S + + G S
Sbjct: 2 LVEAIIVEVQDGNGLNLGVQWSNKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPA 61
Query: 245 FSVKGVLDR-------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ + + + +L AL LA P++ + + ASF G +
Sbjct: 62 WDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLS 121
Query: 298 VSSS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
S + +V G L TP V + L I+ EVS N+ P++
Sbjct: 122 GSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNT 181
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R V + +G T+VL GLL D ++ +PLL IP++G LFR + R + + +
Sbjct: 182 RTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVF 241
Query: 414 ATPFLVK 420
P +++
Sbjct: 242 IRPTIIR 248
>gi|323183550|gb|EFZ68947.1| general secretion pathway protein D [Escherichia coli 1357]
Length = 686
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|254524408|ref|ZP_05136463.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
gi|219721999|gb|EED40524.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
Length = 792
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 66/276 (23%), Positives = 115/276 (41%), Gaps = 30/276 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+V++ L+ QV ++ I EV + ++G Q + + F GG ++ G
Sbjct: 380 RVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTTGGSGLNTG 438
Query: 243 -------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G ++ GV + + + +AL+ L+ P L + +
Sbjct: 439 ARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSRGGANILSTPNLMTLDNE 498
Query: 284 SASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+AS G + + S+ ++ D G+ L P + G + L I E
Sbjct: 499 AASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQE 558
Query: 336 VSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
VS + R DT+V L G +VL GLL+D + ++ +P L KIP+L
Sbjct: 559 VSSIDAQSASSTAGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVL 618
Query: 395 GALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429
GALFR+ R +T + + P +V+ P A + L+R
Sbjct: 619 GALFRSDTRKRAKTNLMVFLRPHVVRDPAAGQRLTR 654
>gi|152980977|ref|YP_001355054.1| PilQ type IV pilus assembly protein [Janthinobacterium sp.
Marseille]
gi|151281054|gb|ABR89464.1| PilQ type IV pilus assembly protein [Janthinobacterium sp.
Marseille]
Length = 686
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 49/250 (19%), Positives = 91/250 (36%), Gaps = 25/250 (10%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----------------------SKS 229
QV ++ I E +G + S + G + +
Sbjct: 433 ATRQVMIEARIVEADDKFSSSLGAKLSFGVQNQGNYQLGGRQTSTTTAIGPPTLGGSAVN 492
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
A ++ L ALE + ++ P + A
Sbjct: 493 LPASTINSNTPGSVALTLFNAAATRFIGLELSALEADGKGKVISSPRVITADQLKALIEQ 552
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
G + Y+ +SS GATSV+ + L TP + G + L +V++ +GV
Sbjct: 553 GTELPYQQATSS-GATSVSFRKANLKLEVTPQITPDGNVILD--VDVNKDTVGVETRSGF 609
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ + T V + +GGT+V+ G+ + + +P IP+ G LF+ + ++TE
Sbjct: 610 AIDTKHVKTQVLIDNGGTVVIGGIFQQTERDSVSKVPFFGDIPVFGNLFKTTGRTNDKTE 669
Query: 410 IFIAATPFLV 419
+ I TP ++
Sbjct: 670 LLIFLTPKIL 679
>gi|170765481|ref|ZP_02900292.1| general secretion pathway protein GspD [Escherichia albertii
TW07627]
gi|170124627|gb|EDS93558.1| general secretion pathway protein GspD [Escherichia albertii
TW07627]
Length = 686
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 57/320 (17%), Positives = 111/320 (34%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------------------- 241
G Q + + + G +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPETN 434
Query: 242 ----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|67641888|ref|ZP_00440653.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4]
gi|121600460|ref|YP_994488.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
gi|126439652|ref|YP_001060705.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668]
gi|126450056|ref|YP_001082319.1| type II/III secretion system protein [Burkholderia mallei NCTC
10247]
gi|226198301|ref|ZP_03793872.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9]
gi|251767786|ref|ZP_02268424.2| type IV pilus secretin PilQ [Burkholderia mallei PRL-20]
gi|254174977|ref|ZP_04881638.1| type II/III secretion system protein [Burkholderia mallei ATCC
10399]
gi|254206684|ref|ZP_04913035.1| type IV pilus secretin PilQ [Burkholderia mallei JHU]
gi|121229270|gb|ABM51788.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
gi|126219145|gb|ABN82651.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668]
gi|126242926|gb|ABO06019.1| type II/III secretion system protein [Burkholderia mallei NCTC
10247]
gi|147752226|gb|EDK59292.1| type IV pilus secretin PilQ [Burkholderia mallei JHU]
gi|160696022|gb|EDP85992.1| type II/III secretion system protein [Burkholderia mallei ATCC
10399]
gi|225929821|gb|EEH25837.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9]
gi|238522900|gb|EEP86342.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4]
gi|243061735|gb|EES43921.1| type IV pilus secretin PilQ [Burkholderia mallei PRL-20]
Length = 462
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 35 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 93
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 94 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 150
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 151 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 210
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 211 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 270
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 271 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 330
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 331 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 387
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 388 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 447
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 448 SELVVYITPTVV 459
>gi|107024260|ref|YP_622587.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054]
gi|105894449|gb|ABF77614.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054]
Length = 371
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 58/297 (19%), Positives = 108/297 (36%), Gaps = 34/297 (11%)
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
+Q L Q ++ +++ NLL + QV
Sbjct: 47 RAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRITQIAGLIDAIDRPSRQVR 106
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------SFAADFGGKFVSEGGD 244
++ I E + + +G + ++ P+ AA G F +
Sbjct: 107 IEARIVEGEQGFSRNLGARVALRAQGRPPAAEGASFTANARNALDLAARPLGGFDAATAG 166
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
F++ + L ALE + ++ P + A G + Y+ G
Sbjct: 167 FTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ-AKVGNGM 225
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P + GR+ L + +V++ +G P+ + T VE+ +
Sbjct: 226 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVEN 283
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
GGT+ + G+ + + +PLL KIP LGALFR+ + E+ + TP +V
Sbjct: 284 GGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQRNELVVFITPTVVDA 340
>gi|307295325|ref|ZP_07575164.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
gi|306878828|gb|EFN10047.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
Length = 412
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 85/320 (26%), Positives = 127/320 (39%), Gaps = 23/320 (7%)
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV----MN 186
+ RVE+ + VL + + + + + V +
Sbjct: 61 YPRAIGRVEVDREG-VLSVAAPSPRSLRLTAIGAGEATVSVFGGDGGLIGREAVRVAPAD 119
Query: 187 LLNIAGEDQVT-LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-- 243
+ +QV + V A V LK +GF S + + G GG
Sbjct: 120 APVVRAGEQVVAVDVQFAAVSATTLKALGFNFSKLSGDIQGAIVSPSSLGSASFDPGGLS 179
Query: 244 ---------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
F++ VL AL + LA+PTL SG+ ASF +GG+
Sbjct: 180 LEASAPIQNAFNLFLSAPNRGIGAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEFP 239
Query: 295 YKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDM 348
+S + ++GV L TP VLS I L+I EVSE + + +
Sbjct: 240 VPVPQASGSGNMLSIQYKEFGVRLSVTPFVLSKDHIVLKIAPEVSELDYANGVQLQGYVV 299
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P R R A+TTVEL SG + V+AGL KE P L +P+LGA F+ + +E+
Sbjct: 300 PGLRRRSAETTVELGSGQSFVIAGLSYSSQTVTKEKTPFLGDLPVLGAFFKRQQNQKEKQ 359
Query: 409 EIFIAATPFLVKPVAMRDLS 428
E+ I ATP LV V ++
Sbjct: 360 ELIIVATPRLVTAVKPEEVP 379
>gi|170695725|ref|ZP_02886867.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M]
gi|170139330|gb|EDT07516.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M]
Length = 581
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 56/296 (18%), Positives = 108/296 (36%), Gaps = 33/296 (11%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196
++ L +Q ++ ++ NLL + QV
Sbjct: 287 ARAEDVRRLLTGSGNQRVLSKRGAVTADPRTNLLFVTDLEGRLAQIAALLASVDRPTRQV 346
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------FGGKFVSEGGD 244
++ I E + +G + S+ G+S+ + + F +
Sbjct: 347 LIEARIVEGEHGFSRNLGVRLSMAGTSADGTTRGLSGGKDGLVADLSARPIAGFDAATAG 406
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ L ALE ++ P + A G + Y+ G
Sbjct: 407 LTLFAAGATRLLNIELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQGV 465
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P ++ GR+ L + +V++ +G P+ + T VE+
Sbjct: 466 SGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVED 523
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
GGT+ + G+ D + +PLL KIP+LGALFR+ + +E+ + TP +V+
Sbjct: 524 GGTVSIGGIYATDGRDDVTRVPLLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 579
>gi|89899353|ref|YP_521824.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
gi|89344090|gb|ABD68293.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
Length = 702
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 57/303 (18%), Positives = 104/303 (34%), Gaps = 29/303 (9%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ T + + V++ L+ QV ++ I EV D + G Q
Sbjct: 348 QIQADVATNSLIITAPEPQYRQLRAVIDRLD-GRRAQVLVESLIVEVNADRAAEFGIQWQ 406
Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
+G + +V+ + + +
Sbjct: 407 GPLGKAGDGVIGLLGTNFGAAGKNIINLATGAGAVAPGAGLNFGAVQRTNGVYVLGFLAN 466
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------TGATSVTTHDY 312
LE + + L+ P L + + A G + T S + T+V D
Sbjct: 467 FLETSGSGNVLSTPNLLTLDNEEAKIVIGENVPFVTGSYTSNNTSGASVNPFTTVERKDV 526
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLA 371
G+ L P + G + + I E S G + P+ R ++TV + G +VL
Sbjct: 527 GLTLKVKPQINEDGTVKMVIYQETSAVKAGTEKDANGPTTSKRTIESTVLVDDGSIVVLG 586
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
GLL+D ++ +P L +P+ G LF++ R +T + + P +V+ D
Sbjct: 587 GLLQDKYSGNQDKVPGLGDVPLFGNLFKSEARTRNKTNLMVFLRPVVVRDAHASD-QLSM 645
Query: 432 DHY 434
D Y
Sbjct: 646 DRY 648
>gi|167721530|ref|ZP_02404766.1| type II/III secretion system protein [Burkholderia pseudomallei
DM98]
gi|167817709|ref|ZP_02449389.1| type II/III secretion system protein [Burkholderia pseudomallei 91]
Length = 454
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 27 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 85
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 86 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 142
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 143 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 202
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 203 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 262
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 263 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 322
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 323 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 379
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 380 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 439
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 440 SELVVYITPTVV 451
>gi|324119774|gb|EGC13654.1| general secretion pathway protein D [Escherichia coli E1167]
Length = 686
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632
>gi|323496092|ref|ZP_08101152.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326]
gi|323318836|gb|EGA71787.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326]
Length = 544
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 63/318 (19%), Positives = 114/318 (35%), Gaps = 42/318 (13%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
+++ ++ G +++ + +A + + + + S++ + Q
Sbjct: 210 QLQAAVAQLIGSGSGQSVVVTPQASVITVRAYPDEVREVREFLGVSQQ-------RMQRQ 262
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVS 240
V L+ I EV Q G S SS+G + S G +
Sbjct: 263 VILEAKILEVTLSDGYQQGINWSKAFSSNGTNYSIGQGSIVKDGNGDILPAVLPGLDAIG 322
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V+ SF+ VL + + L+ P +TA + Q A G Y T S
Sbjct: 323 TLLGGQTNLVISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLS 382
Query: 301 S----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
S + +T G+ L TP + G + L + V + V
Sbjct: 383 SVVGSGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEIGFGD 442
Query: 351 Y---------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+R++D+ + G +V+ GL+K + +P L +P LG LFRN+
Sbjct: 443 TRITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDVPALGHLFRNT 502
Query: 402 RFNREETEIFIAATPFLV 419
++TE+ I P +V
Sbjct: 503 TKLTQKTELVILLKPTVV 520
>gi|293412339|ref|ZP_06655062.1| general secretion pathway protein D [Escherichia coli B354]
gi|293449309|ref|ZP_06663730.1| general secretion pathway protein D [Escherichia coli B088]
gi|291322399|gb|EFE61828.1| general secretion pathway protein D [Escherichia coli B088]
gi|291469110|gb|EFF11601.1| general secretion pathway protein D [Escherichia coli B354]
Length = 679
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 368 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 427
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625
>gi|238025976|ref|YP_002910207.1| type II/III secretion system protein [Burkholderia glumae BGR1]
gi|237875170|gb|ACR27503.1| Type II/III secretion system protein [Burkholderia glumae BGR1]
Length = 649
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 75/471 (15%), Positives = 150/471 (31%), Gaps = 87/471 (18%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
P + P++ + A + ++IS+ L + + V
Sbjct: 174 GPPITMPAPVRLSAAPASVHGSHGLHGHRRISLDLQQAPLAAVFDAFAR----------- 222
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH------LEMTLRRFIAD 133
+ +++ L G+ G A + L + + + + A
Sbjct: 223 --FTGQSIVLSGRVQGAATLRLRDVPWRDAFDALLDANGLAMARRGGVIWVAPVAELAAR 280
Query: 134 SNIRVEMVSDTVVLHGMVR------TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
R E + T L + + A L+ Q ++ + + NL
Sbjct: 281 ERARFETHARTAALEPLASRAFVLRYPRAKDVARLLTGGAAGQRVLSRRGSVLADPRTNL 340
Query: 188 LNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----- 224
L + QV ++ I E R +++G + ++ S+
Sbjct: 341 LFVTDLDGRLAQIAALLAQLDRPSRQVLIEARIVEGERGFSRELGARLALRSSAWGGSRA 400
Query: 225 -------------------------GPSKSFAADFGG-----------KFVSEGGDFSVK 248
G + GG F + ++
Sbjct: 401 GAGAGGSGGSDGGAGGAAMPDSNPGGAATGIVGGPGGRLLDLSARPLAGFEAATAGLTLF 460
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
+ L ALE R ++ P + A G + Y+ G + V
Sbjct: 461 VAGASRLLDLELSALEAQGRGRIVSSPRIVTADRAPALIEQGTELPYQ-AKVGLGVSGVQ 519
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
+ L P + G + L + +V++ +G + P+ + T VE+ +GGT+
Sbjct: 520 FRRATLKLEVEPQITPEGHVVLDL--DVAKDSVGESTDAGPAIHTKHVRTRVEIENGGTV 577
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ G+ + D + +P+L KIP+LGALFR+ + E+ + TP +V
Sbjct: 578 SIGGIYESDRRDDVTRVPVLGKIPMLGALFRHRARRQRTAELVVYITPRVV 628
>gi|188535320|ref|YP_001909117.1| Putative type II secretion system protein [Erwinia tasmaniensis
Et1/99]
gi|188030362|emb|CAO98253.1| Putative type II secretion system protein [Erwinia tasmaniensis
Et1/99]
Length = 384
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 65/322 (20%), Positives = 123/322 (38%), Gaps = 21/322 (6%)
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+QML L + + + + R+ +V L ++ L
Sbjct: 77 EAQEQMLPLFNRSLTLVHADAAAVNTSLQNERTRLMSARGSVTLDSRTNSLLLRDTEKAL 136
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
++T ++ + L++ Q+ L I + + L+++G ++G +
Sbjct: 137 TQT---------------ERWIRQLDVPL-AQIELAAQIVTISEESLREMGVTWGMSGEA 180
Query: 224 SGPSKSFAADF---GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ G LD L ALE +A P L
Sbjct: 181 QVSDALRTSQLRVELATGRPAGVAGFTLAKLDGRLLALELSALESEHQADIIASPRLFTS 240
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSE 338
Q+AS G + Y+ + ++G+T++ + + + TP V GRI L I V
Sbjct: 241 HQQTASIKQGTEIPYEVSTGNSGSTTMEFKEAMLGMEVTPVVQPNGRILLKLHISQNVPG 300
Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
+ ++ + ++ DT V L G T+ L G+ + + + +P L IP+LGALF
Sbjct: 301 RNMRSGENEVLTIDKQEIDTQVILKDGQTLALGGIFQQQSESGRTKVPWLGDIPLLGALF 360
Query: 399 RNSRFNREETEIFIAATPFLVK 420
R+ ++ E+ I TP L++
Sbjct: 361 RHDVRQQKRRELVIFITPRLIR 382
>gi|167847616|ref|ZP_02473124.1| type IV pilus secretin PilQ [Burkholderia pseudomallei B7210]
Length = 460
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 33 SSPPAADAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 91
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 92 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 148
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 149 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 208
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 209 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 268
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 269 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 328
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 329 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 385
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 386 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 445
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 446 SELVVYITPTVV 457
>gi|51591323|emb|CAH22989.1| putative outer membrane secretin family protein [Yersinia
pseudotuberculosis IP 32953]
Length = 455
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
P E A +++ + +++++ + + + + +V P +A ++
Sbjct: 68 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 123
Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
L + G ++ + ++ A +TL A++ + +
Sbjct: 124 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 179
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L G + + S A + + T L + A + + L + QV L I +
Sbjct: 180 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 235
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
+ L+++G + G G + DF SV + E L A
Sbjct: 236 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 294
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
LE+ + +A P L Q+AS G Y A ++ + + + TP +
Sbjct: 295 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 354
Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
L G+I L ++ + P I + +M ++ T V + G TIVL G+ + +Q
Sbjct: 355 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 414
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+PLL+ IP+LGA+FR + E+ I TP L+
Sbjct: 415 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 455
>gi|120600493|ref|YP_965067.1| general secretion pathway protein D [Shewanella sp. W3-18-1]
gi|120560586|gb|ABM26513.1| general secretion pathway protein D [Shewanella sp. W3-18-1]
gi|319424804|gb|ADV52878.1| general secretion pathway protein D [Shewanella putrefaciens 200]
Length = 705
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/283 (20%), Positives = 103/283 (36%), Gaps = 47/283 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
+ V+N L+I QV ++ I EV G Q + + G
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394
Query: 236 ---------------------------------GKFVSEGGDFSVKGVLDRFSFETVLHA 262
+ G + + F ++ A
Sbjct: 395 WQAQDKEGDTVTTLDGNGNPVTTKNPDTRGDVTLLAQALGKVNGMAWGVAMGDFGALIQA 454
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLH 317
+ T LA P++T + Q ASF G + + ++S +V + GV L
Sbjct: 455 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLK 514
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
P + + L I+ EVS S+ R+ TTV SG +VL GL+ ++
Sbjct: 515 VVPQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEE 572
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+Q+ + +P L IP+LG LF++S + + + I P +++
Sbjct: 573 VQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIR 615
>gi|146328722|ref|YP_001209267.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A]
gi|146232192|gb|ABQ13170.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A]
Length = 734
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 42/255 (16%), Positives = 87/255 (34%), Gaps = 29/255 (11%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------ 241
QV + + + + + +G + ++ + S +
Sbjct: 466 RQVLVDARLVITKDNFARDLGARFGLSFKGTAGSNPIVGSGNLTGTTFYAGMLEEKTIPI 525
Query: 242 ----------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ + + + L AL+ ++ P + G A
Sbjct: 526 DNRLGVNLGIASPNVRAPSYGISILGSDVLVDLELQALQNEGRSEVISSPRVVTQDGNQA 585
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
SG + Y G+ + + L TP V R+ + I+ +
Sbjct: 586 KVMSGQEIPYS-TLDDKGSVQTDYKEALLSLEVTPRVTPNDRVNMEIEIKKDRVNWSEQV 644
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
P+ +T VE+ +G TIVL G+ + + + +PLL IP++G +F+N+
Sbjct: 645 LGQPAIDKNLLNTKVEVANGETIVLGGIYEQEQSLSENKVPLLGDIPVVGNVFKNTNKKF 704
Query: 406 EETEIFIAATPFLVK 420
+ E+ I TP ++
Sbjct: 705 TKNELLIFITPRVID 719
>gi|257485212|ref|ZP_05639253.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 619
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ T + + ++V++ L+ QV ++ I EV D Q G Q
Sbjct: 267 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 325
Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
+ G + G G ++ G+ + + +
Sbjct: 326 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 385
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
AL+ L+ P L + ++AS G + T +S+ +V + G
Sbjct: 386 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 445
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ L+ P + G + L I EVS + R DT++ L G +VL GL
Sbjct: 446 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 505
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L+D Q E +P LS+IP+LG LFRN + +T + + P++++
Sbjct: 506 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 552
>gi|88799076|ref|ZP_01114657.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
gi|88778303|gb|EAR09497.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
Length = 653
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 65/304 (21%), Positives = 113/304 (37%), Gaps = 33/304 (10%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G + E + +++ L+I +QV ++ I EV
Sbjct: 298 SGQNEPPSQPISVLADEEQNALIVRAEPSDMKELESIISQLDIP-REQVLIEAAIVEVTG 356
Query: 208 DILKQIGFQH--------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---- 249
+ +G Q S++ +G S A G+ +S+ G +
Sbjct: 357 NDTDTLGVQWATNPEVVQDGVPFLSVSSEVAGASVGNLAQSVGQGISQAGGSPLGALTSV 416
Query: 250 -----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+R F + ALE A+ L+ P++ + A T G +KT
Sbjct: 417 PAGTFMGLADPFGNRVDFGVAIQALESASNTNFLSTPSILTLDNSEAVITVGNSVPFKTG 476
Query: 299 SSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRK 355
S + D G L P + G I L + V V+ + R+
Sbjct: 477 GSGDEDNPFTIERQDVGTTLTVIPHIQQNGTIRLEVDQIVESVDETVSYDASDVVTKKRQ 536
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T V + SG TIVL GL++D + +L+ +P+L IPI+G LF++ + +T + I
Sbjct: 537 VTTQVLVNSGETIVLGGLIQDQVSELESRVPVLGYIPIIGHLFKSKSTLKTKTNLLIILK 596
Query: 416 PFLV 419
P ++
Sbjct: 597 PSVI 600
>gi|300973519|ref|ZP_07172233.1| general secretion pathway protein D [Escherichia coli MS 45-1]
gi|300410735|gb|EFJ94273.1| general secretion pathway protein D [Escherichia coli MS 45-1]
gi|315291309|gb|EFU50669.1| general secretion pathway protein D [Escherichia coli MS 153-1]
Length = 681
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 370 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 429
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627
>gi|254281904|ref|ZP_04956872.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium
NOR51-B]
gi|219678107|gb|EED34456.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium
NOR51-B]
Length = 729
Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats.
Identities = 61/302 (20%), Positives = 117/302 (38%), Gaps = 31/302 (10%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G R++ ++ +++ + S + AN ++ + + QV ++ I
Sbjct: 423 EGASRSMVSARGSIKFDKRTNSIIITDTAANLAAVRDLIEKVDIPIRQVMIEARIVIADS 482
Query: 208 DILKQIGFQHSITGSSSGPSKSFA--------ADFGGKFVSEGG---------------- 243
D+ +G + + G + A + ++ G
Sbjct: 483 DLNNSLGVRWGGGYLNRGSDSITSVARGLDDVATLNTQAIAGAGLSYPANPLVDLGIEEG 542
Query: 244 ---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
F++ L ALE + +++P + A+ SG + Y+ ++
Sbjct: 543 GKSGFAIGFTSKDLFLTAELQALEASGQGEIVSQPKVITGDKLPATIKSGTEIPYQEGAA 602
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKAD 357
S GAT+ + + L TP + GRI L + V E V N G +PS +
Sbjct: 603 S-GATTTQFKEAVLKLEVTPNITPDGRILLDLVINQDSVGEEVGTPNGGRIPSIDTTELT 661
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T V + +G T+VL G+ + D + +P+L IP LG LF+++ + E I TP
Sbjct: 662 TQVLVGNGETVVLGGVFQSDERIDVSKVPVLGDIPYLGNLFKSTIKQSIKQETLIFITPR 721
Query: 418 LV 419
++
Sbjct: 722 IL 723
>gi|157376152|ref|YP_001474752.1| Type II secretory pathway component PulD-like protein [Shewanella
sediminis HAW-EB3]
gi|157318526|gb|ABV37624.1| Type II secretory pathway component PulD-like protein [Shewanella
sediminis HAW-EB3]
Length = 696
Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats.
Identities = 76/243 (31%), Positives = 119/243 (48%), Gaps = 14/243 (5%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
++ ++I QV L VTIAEV+ + GF+ ++ SSG G G
Sbjct: 439 PLVQRMDI-LPKQVLLSVTIAEVKLTGEFKRGFEFAL---SSGNFSGSTKGGLGLDEIVG 494
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
G FS K + E + +E + + L++P+L G A+ G + + SSS+
Sbjct: 495 GTFSWKSGAN----EIIGKFVEENSQVNILSKPSLLVRDGTEANINVGDKIPVSSGSSSS 550
Query: 303 G-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
G ++T + G+ L TPTV + G + + I E+S V+G V G P++ R
Sbjct: 551 GSGEVVTENITYRETGIKLTVTPTVNAQGVVIMEINQEISNQVVGPVGKGGNPTFFDRSI 610
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T V +G TI+L GL+ DD +G+P L IP++GALF + N +TE+ I TP
Sbjct: 611 KTEVVADTGQTILLGGLISDDTTNSNKGVPYLKSIPLIGALFESDSKNNTKTELVIMVTP 670
Query: 417 FLV 419
+V
Sbjct: 671 KIV 673
>gi|148555505|ref|YP_001263087.1| general secretion pathway protein D [Sphingomonas wittichii RW1]
gi|148500695|gb|ABQ68949.1| general secretion pathway protein D [Sphingomonas wittichii RW1]
Length = 682
Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats.
Identities = 62/275 (22%), Positives = 110/275 (40%), Gaps = 22/275 (8%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
A + + ++ L++ QV ++ I E+ D +Q+ Q I ++ + A
Sbjct: 369 GTPAAIAEVEPLIAQLDVRRP-QVLIEAAIVEISGDQAEQLAVQLGIGAAAINRASGGAT 427
Query: 233 DFGG------------KFVSEGGDFSVKGVLD---RFSFETVLHALERATAIRTLAEPTL 277
F + G S G + +F +L A+ ++T L+ P+L
Sbjct: 428 SFTSPGLPLQSILTAIGSPAAGAVLSNGGSANIRFGDNFSILLQAIGQSTRSNLLSTPSL 487
Query: 278 TAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
T + + A G ++T S S T++ D G+ L P + + L
Sbjct: 488 TTLDNEPAEIVVGQNVPFRTGSFSTDGNTINPFTTIERQDVGLTLRVVPRIHQGNVVRLE 547
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ EVS V R T+V G TIVL GL+ DD Q + +P+L I
Sbjct: 548 VAQEVSSLTNAVTGAADLITNRRSIQTSVLADDGQTIVLGGLISDDRTQTRSQVPILGDI 607
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
PI G LFR+ + + + +F+ P +++ +
Sbjct: 608 PIAGELFRSRKESHVKRTLFVFLKPTILRDREAAN 642
>gi|1019923|gb|AAA79322.1| S-protein secretion D [Aeromonas hydrophila]
Length = 737
Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats.
Identities = 81/451 (17%), Positives = 156/451 (34%), Gaps = 52/451 (11%)
Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISI--------GLNKVIILQVPVDVQDVLVSDP- 74
+ +K+A+ A+ + ++I L ++ + + DV S P
Sbjct: 253 GPVELVKQASEAISLFDQPALKSSHSLAISPVYSDAEQLGNALMKVLQSEGYDVSDSPPF 312
Query: 75 -TKADVVVHSPRTMYLFGKNVGQAN-----VILIGHDGKQMLNLDI----LIERDIAHLE 124
+ + + + +F + V ++ + ++ + + + A +
Sbjct: 313 GGVLVLKMKELQRIIVFAAEPRVLSHIRQWVEVLDRESQEKVENGLFIYQVRNTQAAAIA 372
Query: 125 MTLRRFIADSNIRVEMVS--DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
L +NI V+ +TV G A + S + + + +
Sbjct: 373 TMLGALGYGANIPATGVNSTNTVTATGEQSGAGSLTAASPATSAPTSIAPKGEQGSVVVD 432
Query: 183 KVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
N L G V + V +AEV + + +G S +
Sbjct: 433 GNRNALIFKGSGREWVTLRPLLDELDKPVPSVMIDVLLAEVSLNDKEGLGVDWSNIHTDL 492
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
G + G G + L+A + P L SG+
Sbjct: 493 GAKDLIMSTANGI----GNSGLNLTLNSAGQTRAKLNAFYENKQAVIRSSPKLMVRSGEE 548
Query: 285 ASFTSGGQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
A G + T +S + V GV+L PTV + G + L I E+S
Sbjct: 549 ARIEVGNEIPVVTGTSQSTDNPDAPINKTVQYRKTGVILTIKPTVQASGVVDLTISQELS 608
Query: 338 EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
E + D P+ RK +T + L GG+++LAGL+ + G+PLL IP +G
Sbjct: 609 EQADTSTSTDALSPTIMNRKVNTALTLRDGGSVMLAGLISSTKGEGDTGVPLLGDIPWIG 668
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+LF++ ++ TE+ + P++++
Sbjct: 669 SLFKSKSNSQNRTELVVMIIPYVLRDFHEAQ 699
>gi|126454219|ref|YP_001067989.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a]
gi|242314362|ref|ZP_04813378.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b]
gi|126227861|gb|ABN91401.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a]
gi|242137601|gb|EES24003.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b]
Length = 465
Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 38 SSPPAADAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 96
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 97 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 153
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 154 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 213
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 214 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 273
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 274 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 333
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 334 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 390
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 391 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 450
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 451 SELVVYITPTVV 462
>gi|218708368|ref|YP_002415989.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32]
gi|218321387|emb|CAV17337.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32]
Length = 554
Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats.
Identities = 67/320 (20%), Positives = 120/320 (37%), Gaps = 44/320 (13%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
++E+ ++ G +++ + +A + + + + S+K + Q
Sbjct: 218 QLEVAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIREVREFLGISQKRLQR-------Q 270
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVS 240
V L+ I EV Q G + SS+G + + G +
Sbjct: 271 VILEAKIMEVTLSDGYQQGINWTKMFSSNGTNYTVGMGSIVKNAAGTIIPGTLPGMDPIG 330
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V+ SFE VL ++ + L+ P +TA + Q A G Y T S
Sbjct: 331 AALGGQSNLVVSGGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTELS 390
Query: 301 ST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
S+ +T G+ L TP + G + L + V E V ++ S
Sbjct: 391 SSVGSGDNANVAPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGS 450
Query: 351 Y-----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+R++D+ + G +V+ GL+K + + +P L IP LG LFR
Sbjct: 451 TTGIVKLPLAKSSIRESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFR 510
Query: 400 NSRFNREETEIFIAATPFLV 419
N+ ++TE+ I P +V
Sbjct: 511 NTSQLTQKTELVILLKPTIV 530
>gi|90580158|ref|ZP_01235965.1| MSHA biogenesis protein MshL [Vibrio angustum S14]
gi|90438460|gb|EAS63644.1| MSHA biogenesis protein MshL [Vibrio angustum S14]
Length = 548
Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats.
Identities = 64/306 (20%), Positives = 114/306 (37%), Gaps = 33/306 (10%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
V+ GM+ + V +S + + + + QV L+ I EV
Sbjct: 220 VVSGMIGSGDGRNVMVSPQAGLISVRAFPNELREVKE-FLGMSQRRLKRQVVLEAKIMEV 278
Query: 206 RRDILKQIGFQHSITGSSSGPSK------------SFAADFGGKFVSEGGDFSVKGVLDR 253
+ Q G + SS G + + + GG +SE +
Sbjct: 279 TLNDSYQQGIDWNNLTSSIGGTGIIVNEMKDAANAAASILPGGNAISELLGGQTNIKITD 338
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------G 303
+F V+ L + L+ P +TA + Q A GG + T SS+
Sbjct: 339 GNFSAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNNVSP 398
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS----------YRV 353
S+T G+ L TP + G + L + V + ++ + +
Sbjct: 399 DVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNEQKTIEVGTAKPMVLPLAKSTI 458
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R++D+ + +G +V+ GL+K I +P L IP +G LFR+ +++TE+ I
Sbjct: 459 RESDSIIHARTGDVVVIGGLMKSSINDQVSKVPFLGDIPGIGNLFRHINKVKKKTELVIL 518
Query: 414 ATPFLV 419
P +V
Sbjct: 519 LKPTVV 524
>gi|167044898|gb|ABZ09565.1| putative bacterial type II and III secretion system protein
[uncultured marine crenarchaeote HF4000_APKG8D22]
Length = 637
Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats.
Identities = 52/250 (20%), Positives = 96/250 (38%), Gaps = 18/250 (7%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------- 234
+ +L+I+ QV ++ I E+ + +++G + G
Sbjct: 388 IKILDISTP-QVLIEAKIVEISKTFSQELGISWGLVNPEPGFPTVTGNSTFDTQFLVDLR 446
Query: 235 -----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
V+ + + L ALE++ R ++ P +T + A S
Sbjct: 447 PTVDIATGNVAGFDSLIQGFLPGNIALNVRLEALEKSGKGRVISSPRVTTADNKEARVLS 506
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
G Y+ S S+ + + L TP V S I + I + A +P
Sbjct: 507 GRDIPYQVNSVEG--NSIQFVNAELSLTVTPHVTSDNSIYMTIDATKNAADFAQLAAGIP 564
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ ++ T V + +G T VLAG+ + + K+ +P SK+P++G LFR E
Sbjct: 565 TITRKEMHTEVLVGNGETTVLAGIYESTSTENKKAVPWFSKLPLVGFLFRAFDDKDTINE 624
Query: 410 IFIAATPFLV 419
+ + TP +V
Sbjct: 625 LLVFITPTIV 634
>gi|217424883|ref|ZP_03456380.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576]
gi|217392339|gb|EEC32364.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576]
Length = 459
Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 32 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 90
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 91 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 147
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 148 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 207
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 208 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 267
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 268 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 327
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 328 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 384
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 385 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 444
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 445 SELVVYITPTVV 456
>gi|237814100|ref|YP_002898551.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346]
gi|237503013|gb|ACQ95331.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346]
Length = 552
Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats.
Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
+ A + A + G + ISI L + + V
Sbjct: 125 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 183
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 184 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 240
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + G V + L Q ++ + + NLL +
Sbjct: 241 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 300
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 301 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 360
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA F + ++ + L ALE + ++ P + A
Sbjct: 361 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 420
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 421 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 477
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 478 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 537
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 538 SELVVYITPTVV 549
>gi|15836975|ref|NP_297663.1| fimbrial assembly protein [Xylella fastidiosa 9a5c]
gi|9105203|gb|AAF83183.1|AE003888_16 fimbrial assembly protein [Xylella fastidiosa 9a5c]
Length = 637
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 45/265 (16%), Positives = 99/265 (37%), Gaps = 29/265 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231
DQV ++ I + +G + + +S +
Sbjct: 370 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSHVTTADSSTSATRGLN 429
Query: 232 ---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
S + + +F+ + L AL++ + ++ P + + +
Sbjct: 430 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 489
Query: 289 SGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341
G + Y T V+ +V + + L TPT+ + R+ L + E+ + +
Sbjct: 490 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 549
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+
Sbjct: 550 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 609
Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426
++++ E+ I TP +++
Sbjct: 610 GKDKQKAELLIFVTPKVLRVANATA 634
>gi|114561293|ref|YP_748806.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB
400]
gi|114332586|gb|ABI69968.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB
400]
Length = 710
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 59/283 (20%), Positives = 102/283 (36%), Gaps = 47/283 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
+ V+N L+I QV ++ I E+ G Q + G
Sbjct: 339 ESVINQLDIR-RAQVLVEAIIVEIAEGDNVGFGVQWGSEAGGLTQFNNIGPTIGEVGAGV 397
Query: 236 -------GKFVSEGGDFSVKGVLDR--------------------------FSFETVLHA 262
G V+ G +F ++ A
Sbjct: 398 WSARETDGTTVTVGNSDGGSTTTTNPTSDGDYTLIAQALGKVNGMAWGVTTGNFAALIQA 457
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLH 317
+ T LA P++T + Q ASF G + T ++ +V + GV L
Sbjct: 458 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPIITGSTSSSNNDNPFQTVERKEVGVKLK 517
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
P + + L I+ EVS S+ R+ TTV SG +VL GL+ ++
Sbjct: 518 VVPQINEGSSVKLTIEQEVSGVNGNTGVD--ISFSTRRLTTTVMADSGQIVVLGGLINEE 575
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+Q+ + +P+L IP +G LF++S + + + I P +++
Sbjct: 576 VQESIQKVPILGDIPFIGHLFKSSSSKKTKKNLMIFIKPTIIR 618
>gi|223040615|ref|ZP_03610885.1| type II and III secretion system protein [Campylobacter rectus
RM3267]
gi|222878073|gb|EEF13184.1| type II and III secretion system protein [Campylobacter rectus
RM3267]
Length = 513
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 63/311 (20%), Positives = 112/311 (36%), Gaps = 35/311 (11%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
+L+ +I + + ++ +G S + + + QV + V+I
Sbjct: 181 KAILNNTTESIVAPDPIINANAGLVTVTGTAAQLRRVSD-YIKDIQERLKKQVIIDVSIV 239
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------- 252
V G S + + S GG + +
Sbjct: 240 SVELANSYTKGIDWSKFSIGFKTGFANGIPLFSEQNSNGGSLTWSNRGNSFSRGFNRELS 299
Query: 253 -----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------ 301
F+ + VL+ LE + ++ P +T ++ Q A + G Y+ S
Sbjct: 300 LLSGFNFNLDGVLNFLETNGKTKVISSPKITTLNNQQALISVGDNVNYRVQEESQNNNSL 359
Query: 302 TGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MP 349
G T++T Y G++L+ P V +I LRI +S + P
Sbjct: 360 NGKTTITYKQYSVFIGILLNILPEVSDDNKIMLRINPSLSSFKYNEDDVRQSTKIREIAP 419
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+K T V++ SG TIVL GL+ + +P L IP+ G F++++ N TE
Sbjct: 420 DTIQKKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLGDIPVFGNAFKSTKDNIRTTE 479
Query: 410 IFIAATPFLVK 420
+ TP +V
Sbjct: 480 LVFIITPRIVD 490
>gi|330501497|ref|YP_004378366.1| type 4 fimbrial biogenesis outer membrane protein PilQ [Pseudomonas
mendocina NK-01]
gi|328915783|gb|AEB56614.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
[Pseudomonas mendocina NK-01]
Length = 704
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 48/307 (15%), Positives = 114/307 (37%), Gaps = 34/307 (11%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVT 201
+ G T++D R + + + + +++ L+I QV ++
Sbjct: 390 KLYEEGSSGTLKDDMRGSVIYDDRTNSLIVTLTQERIDELRRIVTQLDIPVR-QVMIEAR 448
Query: 202 IAEVRRDILKQIGFQHSIT------GSSSGPSKSFA----------------------AD 233
I E D K +G + ++ G + +
Sbjct: 449 IVEANVDYDKALGVRWGGNFWVGDKWNAWGKNGNLGVEENEDGGQVGRFPGDRQTPVNTP 508
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
F V+ + V + + L A+E++ + +++P + ++A G +
Sbjct: 509 FVDLGVAGTSGIGIGFVTNNTILDMQLSAMEKSGSGEVVSQPKVVTSDKETAKILKGTEV 568
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSY 351
Y+ SSS ++ + + + L TP + R+ + ++ + + + G +P+
Sbjct: 569 PYQESSSSGATST-SFKEAALSLEVTPQITPDNRVLMEVKVTKDAPDFSVTSSTGGIPAI 627
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+ + V + G TIV+ G+ + + + +P L +P +G +FR + E+
Sbjct: 628 NKNEVNAKVLVADGETIVIGGVYSNTQSKSVDKVPFLGDLPFVGRVFRRDLVQDRKAELL 687
Query: 412 IAATPFL 418
+ TP +
Sbjct: 688 VFLTPRI 694
>gi|237807143|ref|YP_002891583.1| general secretion pathway protein D [Tolumonas auensis DSM 9187]
gi|237499404|gb|ACQ91997.1| general secretion pathway protein D [Tolumonas auensis DSM 9187]
Length = 685
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 31/279 (11%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
++++ L+I QV ++ I E++ G Q + T +
Sbjct: 342 TAQPDVMQELERIIAKLDIR-RAQVLVEAIIVEIQDGDTLNFGVQWANTNGGGTQFTATG 400
Query: 232 ADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ + ++ ++ AL T LA
Sbjct: 401 LPTTTVANAANEWRNDGELSSTSTAALSSFNGLVAGFYEGNWAGLVTALSSNTKSNILAT 460
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGL 330
P++ + + A+F G + T S S+ ++V G L TP + + L
Sbjct: 461 PSIVTLDNKEAAFNVGQEVPVVTGSQSSTAGSVYSTVERKTVGTKLKVTPQINEGDSVLL 520
Query: 331 RIQTEVSEPVIGVNAGDMP---------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
++ EVS + ++ R +V + SG T+VL GLL ++ +
Sbjct: 521 EVEQEVSSVASSSSTDSSSSSSNSSLGSTFNTRTVKNSVLVKSGETVVLGGLLSNNTSES 580
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+PLL IPILG LFR + + + + + P +++
Sbjct: 581 VYKVPLLGDIPILGYLFRYNGTSTTKQNLMVFIHPTILR 619
>gi|163857177|ref|YP_001631475.1| general secretion pathway protein D [Bordetella petrii DSM 12804]
gi|163260905|emb|CAP43207.1| general secretion pathway protein D [Bordetella petrii]
Length = 862
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 63/273 (23%), Positives = 104/273 (38%), Gaps = 30/273 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSE 241
+V++ L+ QV ++ I EV ++ + G Q + GS G + GG +
Sbjct: 408 EVIDQLDQR-RAQVLVESLIVEVSQEKAAEFGIQWMTGAGSLDGSGFIGGTNLGGSGIGS 466
Query: 242 GGDFSVKGVLDRFSFETVL-------------------HALERATAIRTLAEPTLTAISG 282
G + L AL+ + L+ P L +
Sbjct: 467 AGTGATTLDALGRGLTLGLVKGTVDVLGNQVINLNVLARALQNSGEANILSTPNLLTLDN 526
Query: 283 QSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+ AS G + T S+ ++ D G+ L+ P + G + L I
Sbjct: 527 EPASILVGKTVPFVTGQYVTSGSAGSNNPFQTIEREDIGLKLNIRPQISEGGAVKLDIYQ 586
Query: 335 EVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
EVS ++ R DT+V + G IVL GLL+D + +P LS IP+
Sbjct: 587 EVSSIDEASSSETTGLVTNKRAIDTSVLVDDGQIIVLGGLLEDRVTSTTSAVPGLSSIPL 646
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
LGALFR + R ++ + + PF+V+
Sbjct: 647 LGALFRYDKRQRTKSNLMVFLRPFVVRDARDSA 679
>gi|114331780|ref|YP_748002.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91]
gi|114308794|gb|ABI60037.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91]
Length = 720
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 49/264 (18%), Positives = 104/264 (39%), Gaps = 39/264 (14%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKF 238
QV ++ I E + +G + + ++ + +++
Sbjct: 448 TQVRQVMIETRIVEATDTFSRNLGARFGVQNATRIGSQTNGRRLGISGNLGNSSELAAGT 507
Query: 239 VSEGGD-----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+S G S+ + + L ALE + R +A P
Sbjct: 508 ISPSGGDNLNVNLPAAALAGVAGGPAALGLSLIKINNGTLINLELSALESDSQGRIIASP 567
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
L + AS G + ++T+S + + + L TP + I +++ +
Sbjct: 568 RLVTANRVEASIEQGTEIPFQTISVT--RPQIQFKKAVLGLKVTPQITPDDNIIMKL--Q 623
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
V++ G + P+ ++ T V + +GGT+V+ G+ + ++ + IPLL +P+LG
Sbjct: 624 VNQDTRGESTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEKRDRNQIPLLGDVPLLG 683
Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
LF+N+ ++ E+ I TP ++
Sbjct: 684 NLFKNTAKRDDKRELLIFVTPRIL 707
>gi|163849487|ref|YP_001637530.1| general secretion pathway protein D [Methylobacterium extorquens
PA1]
gi|163661092|gb|ABY28459.1| general secretion pathway protein D [Methylobacterium extorquens
PA1]
Length = 794
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 67/291 (23%), Positives = 120/291 (41%), Gaps = 21/291 (7%)
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIG 214
+ A+ + + S + K++ +L A QV L+ IAEV + Q G
Sbjct: 463 RRDAIGVVADEANNSLVISATRNQYDKILRILGRLDAMPTQVLLETVIAEVTLNNELQFG 522
Query: 215 FQHSITGS-----------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
Q + S + ++ + + G +L+ F VL+AL
Sbjct: 523 VQWFLKNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNAL 582
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVL 316
+ T + ++ P +T + ++A G Q S + + D GV+L
Sbjct: 583 QGVTRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVIL 642
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
TP V G + L I EVS+ V + + P+ R R+ T+V + G ++ + G+++
Sbjct: 643 SVTPRVNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQ 702
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+ Q E +PLL +PI+G FRN R TE+ + P +++ D
Sbjct: 703 EKAQITNESVPLLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEAD 753
>gi|121607022|ref|YP_994829.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2]
gi|121551662|gb|ABM55811.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2]
Length = 712
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 65/350 (18%), Positives = 127/350 (36%), Gaps = 46/350 (13%)
Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
+ + L + + + G T S+R ++E +Q A
Sbjct: 366 QRLEPLRTQAYQLNYAKASDILTQLNASGGAGGSSTRFLSERGSAIAEPRTNQLFVTDTA 425
Query: 178 NSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------- 221
+ + +++ L++A QV ++ I E R + +G + T
Sbjct: 426 SKQEEVRQLLARLDVAVR-QVMIEARIVEARDSFGRSLGVRLGSTDLSASRKGTGGYGIG 484
Query: 222 ---------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE--------- 257
+SG + S A D GG FV+ S + F+
Sbjct: 485 GNKRVAYGTSYSDAVKASGANGSTAPDTGGNFVNLPASLSSVNTVGSFALSIFNAATNKF 544
Query: 258 --TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
L A+E R ++ P + A G ++ Y V++ GAT++ +
Sbjct: 545 LTLELSAMEADGKGRIVSSPRIITADQTKALIEQGTEYPY-AVTAPNGATTLAFKKAVLK 603
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
L +P + G I L +VS+ G + + T + + +GGT+V+ G+ +
Sbjct: 604 LEVSPQITPEGNIILD--LDVSKDSRGETTSQGVAIDTKHIKTQILIENGGTVVIGGIFE 661
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+ + IP L +P++G LF++ + E+ I TP ++ +
Sbjct: 662 MEETSQENKIPFLGDVPVVGNLFKSKTKETTKREMLIFITPKVIADSGPK 711
>gi|293406579|ref|ZP_06650505.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412]
gi|291426585|gb|EFE99617.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412]
Length = 679
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 368 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 427
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625
>gi|167587730|ref|ZP_02380118.1| type IV pilus secretin PilQ [Burkholderia ubonensis Bu]
Length = 499
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 57/295 (19%), Positives = 107/295 (36%), Gaps = 34/295 (11%)
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
+Q L Q ++ +++ N L + QV
Sbjct: 175 RAQDVQRLLTGAAGQRLLSKRGAAAADSRTNQLFVTDLAPRIAQIAGLIDAIDRPSRQVR 234
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------------FAADFGGKFVSEGGD 244
++ I E + + +G + ++ + AA G F +
Sbjct: 235 IEARIVEGEQGFSRNLGARLALRARERAAAADGAAFAAGARNALDLAARPLGGFDAATAG 294
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
F++ + L ALE + ++ P + A G + Y+ G
Sbjct: 295 FTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKAIVEQGAELPYQ-AKVGNGV 353
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P + GR+ L + +V++ +G P+ + T VE+
Sbjct: 354 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVED 411
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GGT+ + G+ + + +PLL KIPILGALFR+ + +E+ + TP +V
Sbjct: 412 GGTVAIGGIYEQLRRDDVTRVPLLGKIPILGALFRHRAQRDQRSELVVFITPTVV 466
>gi|34496284|ref|NP_900499.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum
ATCC 12472]
gi|34102137|gb|AAQ58504.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum
ATCC 12472]
Length = 697
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 26/258 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231
QV ++ I E + + +G + + S
Sbjct: 440 KQVLIEARIVEATDNWERDLGIKLTYDRMDPKGIISGNPLGTNVNNVTNLNNNQPYVIQT 499
Query: 232 --ADFGGKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
A + G S + L A++ R ++ P + Q AS
Sbjct: 500 TPAGVNLPIATPYGTLSALYNVGHSVILGLELQAMQAEDKGRIISSPRVMTADRQEASIE 559
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
G + Y+ SS+GATSV+ + L+ P + + + I
Sbjct: 560 QGTEIPYQEA-SSSGATSVSFKKAVLRLNVKPQITPDNHVIMDITVNKDSANFEKTVNGT 618
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
PS K T V + +GGT+VL G+ + + + +P L IP+LGALFR+S+ + +
Sbjct: 619 PSLSTEKIITQVLVENGGTVVLGGIYQQQLNDVINKVPFLGDIPLLGALFRSSQKIDKRS 678
Query: 409 EIFIAATPFLVKPVAMRD 426
E+ I TP ++ +
Sbjct: 679 ELLIFITPKVINDLVAES 696
>gi|120612787|ref|YP_972465.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
gi|120591251|gb|ABM34691.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
Length = 829
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 20/248 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-----------VSE 241
QV ++ +I EV D Q G Q + +
Sbjct: 535 PTQVLIEASIVEVTLDDTLQYGLQWAFNNAGPSNLNGAGQLLTNGPSDKTPIGSSIPTPT 594
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299
FS S VL+AL ++ ++ P+L + +A + G Q KT S
Sbjct: 595 SSGFSYALSNSLGSVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTGSLI 654
Query: 300 -----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYR 352
++ A ++ D GV L TP+V + + ++I V++ V + P ++
Sbjct: 655 TSVSGGNSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGSISLQPVFQ 714
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R+ + V + SG IVL GL++D K G+PLL IP++G+LF N+ TE+ +
Sbjct: 715 QRQITSKVAVRSGEAIVLGGLIRDTSNSSKSGVPLLQDIPLVGSLFSNNGKTGNRTELLV 774
Query: 413 AATPFLVK 420
TP +V+
Sbjct: 775 VITPKVVR 782
>gi|330831366|ref|YP_004394318.1| MSHA biogenesis protein MshL [Aeromonas veronii B565]
gi|328806502|gb|AEB51701.1| MSHA biogenesis protein MshL [Aeromonas veronii B565]
Length = 557
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 101/258 (39%), Gaps = 31/258 (12%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------FGGKFVSEGG 243
+ QV L+ I EV + + G S +S +K +
Sbjct: 276 KRQVVLEARIIEVALNEGYEQGVDWSGLSASWDGNKGITGGQSLANTQLPSTPNQIFSAL 335
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST- 302
+ +F ++ L+ + TL+ P +TA + Q A G Y T +S+T
Sbjct: 336 GGGAGFKISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYYVTNASTTI 395
Query: 303 ----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY- 351
+T G+ L TP + G++ L I V + DM +
Sbjct: 396 TTTSTGTDKTPNVELTPFFSGIALDVTPQIDEEGKVLLHIHPSVIDTEEQNKVIDMGTSG 455
Query: 352 ----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+R++DT V+ +G IV+ GL+K D Q++ +PLL IP +G F N
Sbjct: 456 GKLQLPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPWVGEAFTNR 515
Query: 402 RFNREETEIFIAATPFLV 419
R + ++ E+ I P +V
Sbjct: 516 RESTKKVELVIMLKPTVV 533
>gi|88866562|gb|ABD57336.1| TapQ [Aeromonas salmonicida subsp. salmonicida A449]
Length = 730
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 63/303 (20%), Positives = 114/303 (37%), Gaps = 30/303 (9%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
+L + ++ AV + E ++ S+ K M + QV ++ + +
Sbjct: 425 LLSPRTPSCFSARGAVSVDERTNVLVVKDTADVISNIKPMLDILDIPVKQVVIEARMVTI 484
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------------DFGGKF 238
+ +G + +T + + + + +
Sbjct: 485 DDGFDEALGVRWGVTKNDGHGNSTSGSIEGNDGSGNNNGGSAITRPGVEDRMNVNLPVTN 544
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ F V + D + L ALE+ + +A P +T + + A G + Y
Sbjct: 545 AAGTLAFQVARLADGTLLDLELSALEKESKAEIIASPRVTTANQKPALIEQGTEIPYVES 604
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKA 356
SS+GATSVT + L TP + R+ L + + GD S +
Sbjct: 605 -SSSGATSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDAVSINAQSI 663
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T V + +G T+VL G+ + I+ +PLL IP LG LFR + ++ E+ I TP
Sbjct: 664 TTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSENKKRELLIFVTP 723
Query: 417 FLV 419
+V
Sbjct: 724 KIV 726
>gi|37681131|ref|NP_935740.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016]
gi|37199882|dbj|BAC95711.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016]
Length = 547
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 65/304 (21%), Positives = 112/304 (36%), Gaps = 34/304 (11%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
++ G +++ + +A ++ R ++ + + + QV L+ I
Sbjct: 226 GLIGSGKGQSVVVTPQAGVITVRAFPDEIREV------RQFLGISQERMQRQVILEAKIL 279
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-------DFSVKGVLDRFSF 256
EV Q G S +S G S S + G V G + SF
Sbjct: 280 EVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLPGLDAIGSLLGGQTNVTISDGSF 339
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
E VL + + L+ P +TA + Q A G Y T SS +
Sbjct: 340 EAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQYYVTALSSNVGNDDKSKAVPEVT 399
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
+T G+ L TP + G + L + V E ++ +R+
Sbjct: 400 LTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETKQLNLGGDFQNVTLPLAKSSIRE 459
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+D+ + G +V+ GL+K + + +P IP LG LFRN+ ++TE+ I
Sbjct: 460 SDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGDIPALGHLFRNTSNLTQKTELVILLK 519
Query: 416 PFLV 419
P +V
Sbjct: 520 PTVV 523
>gi|254300620|ref|ZP_04968065.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e]
gi|157810585|gb|EDO87755.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e]
Length = 455
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 79/428 (18%), Positives = 146/428 (34%), Gaps = 38/428 (8%)
Query: 24 AKLPPIKEANAAVINISDVEI-GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
+ + A+V + G + ISI L + + V V
Sbjct: 31 SPPAAGAVSTASVAGTGTGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSERVR 89
Query: 83 SPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
++ L A L+ G ++ +A L R+ D++ RV +
Sbjct: 90 GTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF-DAHARVAQL 148
Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA---------- 191
+ + G V + L Q ++ + + NLL +
Sbjct: 149 -EPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRLAQIA 207
Query: 192 --------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFA 231
QV ++ I E R + +G + I +G A
Sbjct: 208 DLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELA 267
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
A F + ++ + L ALE + ++ P + A G
Sbjct: 268 ARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGA 327
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
+ Y+ G + V + L P + GR+ L + +V++ +G P+
Sbjct: 328 ELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAI 384
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+ T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+
Sbjct: 385 HTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELV 444
Query: 412 IAATPFLV 419
+ TP +V
Sbjct: 445 VYITPTVV 452
>gi|117918609|ref|YP_867801.1| general secretion pathway protein D [Shewanella sp. ANA-3]
gi|117610941|gb|ABK46395.1| general secretion pathway protein D [Shewanella sp. ANA-3]
Length = 702
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 61/281 (21%), Positives = 106/281 (37%), Gaps = 45/281 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
+ V+N L+I QV ++ I EV G Q + + G
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKADGGTQFNNLGPTIGEIGAGI 394
Query: 236 -------GKFVSEGGDFSVKG------------------------VLDRFSFETVLHALE 264
G +++ V G + F ++ A+
Sbjct: 395 WQAQDKEGTYITNPSTGEVIGKNPDTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQAVS 454
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFT 319
T LA P++T + Q ASF G + + ++S +V + GV L
Sbjct: 455 ADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 514
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
P + + L I+ EVS S+ R+ TTV SG +VL GL+ +++Q
Sbjct: 515 PQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEEVQ 572
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + +P L IP+LG LF++S + + + I P +++
Sbjct: 573 ESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIR 613
>gi|71276554|ref|ZP_00652828.1| type II and III secretion system protein:NolW-like [Xylella
fastidiosa Dixon]
gi|71901093|ref|ZP_00683201.1| type II and III secretion system protein:NolW-like [Xylella
fastidiosa Ann-1]
gi|170730937|ref|YP_001776370.1| fimbrial assembly protein [Xylella fastidiosa M12]
gi|71162625|gb|EAO12353.1| type II and III secretion system protein:NolW-like [Xylella
fastidiosa Dixon]
gi|71729136|gb|EAO31259.1| type II and III secretion system protein:NolW-like [Xylella
fastidiosa Ann-1]
gi|167965730|gb|ACA12740.1| fimbrial assembly protein [Xylella fastidiosa M12]
Length = 630
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 45/265 (16%), Positives = 99/265 (37%), Gaps = 29/265 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231
DQV ++ I + +G + + +S +
Sbjct: 363 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTTADSSTSATRGLN 422
Query: 232 ---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
S + + +F+ + L AL++ + ++ P + + +
Sbjct: 423 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 482
Query: 289 SGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341
G + Y T V+ +V + + L TPT+ + R+ L + E+ + +
Sbjct: 483 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 542
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+
Sbjct: 543 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 602
Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426
++++ E+ I TP +++
Sbjct: 603 GKDKQKAELLIFVTPKVLRVANATA 627
>gi|308274907|emb|CBX31506.1| hypothetical protein N47_E50180 [uncultured Desulfobacterium sp.]
Length = 718
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 78/454 (17%), Positives = 153/454 (33%), Gaps = 59/454 (12%)
Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV--- 80
N +I S + I K I +++ I ++P V S T A +V
Sbjct: 159 GLASVFGPGNMLLIIDSGINIRKIASIIESIDQPYIGEMPEIVYLKYASAETVAKMVNEN 218
Query: 81 VHSPRTMYLFGKNVGQANVILIGHD-GKQMLNLDILIERDIAHLEMTLRRFIADS----N 135
++ + L G + +L D I+ + L ++ N
Sbjct: 219 INRGQREVLSQAMPGNTGKAVAEQRLNAVLLFGDKSIKESMHSFISLLDVRSPEAHGMIN 278
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----- 190
+ +D V L +++ + + ++ + + +S ++ K N L +
Sbjct: 279 VYFMENADAVELAKVLQDLVKAGQSKQPAAA-MSVFETAGGIAITADKASNALVVVATPA 337
Query: 191 -------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------PSKSFA 231
QV ++ IAEV D L ++G + + +G +
Sbjct: 338 DYQNLQQIIKKLDKRRKQVFVEAMIAEVSIDKLLELGSKWRAAVTRNGEPIFVGGVGTVD 397
Query: 232 ADFGGKFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAE 274
A +S ++ G+ + F + + A+ L+
Sbjct: 398 AATVNSILSGMTGLTLGGMSNYFTVPQTFVAGGTSDIKVPGITALFSMSDFKDAVNVLST 457
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGVVLHFTPTVLSPGRI 328
P + A G T+ + D G++L P + +
Sbjct: 458 PQILTSDNMEAEILVGENIPLILNRERDVTTTSTVLTSIERKDVGILLKIKPQINEGEYV 517
Query: 329 GLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
L I E+S G P+ R T+V + T+V+ GL+++ ++ I
Sbjct: 518 KLDIYQEISAQKAGSENVITSIGPTMTKRSTKTSVAVKDKQTVVIGGLMQERDEESITKI 577
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
PLL IP LG LF+ +R +T + + TP+++
Sbjct: 578 PLLGDIPGLGWLFKYRSISRAKTNLLVFLTPYII 611
>gi|86149355|ref|ZP_01067586.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88596641|ref|ZP_01099878.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni 84-25]
gi|218563075|ref|YP_002344854.1| putative type II protein secretion system D protein [Campylobacter
jejuni subsp. jejuni NCTC 11168]
gi|85840137|gb|EAQ57395.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88191482|gb|EAQ95454.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112360781|emb|CAL35581.1| putative type II protein secretion system D protein [Campylobacter
jejuni subsp. jejuni NCTC 11168]
gi|284926681|gb|ADC29033.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315927422|gb|EFV06760.1| Pilus biogenesis protein MshL [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315929011|gb|EFV08254.1| General secretory pathway protein D [Campylobacter jejuni subsp.
jejuni 305]
Length = 472
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S K + L + QV + V+I V + G +
Sbjct: 193 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIGLNSQVNNE 252
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
F +F + G G+ +F+++++ L + L+ P L A++ Q A + G
Sbjct: 253 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 311
Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
Y+ SS G + TT G++L+ P + G+I LRI +S+
Sbjct: 312 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 371
Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ P +K + V++ + T++L GL+ D K I LSKIPILG
Sbjct: 372 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 431
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+LF+ N + TEI TP +V V L
Sbjct: 432 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 463
>gi|229589906|ref|YP_002872025.1| putative type II secretion pathway protein D [Pseudomonas
fluorescens SBW25]
gi|229361772|emb|CAY48654.1| putative type II secretion pathway protein D precursor [Pseudomonas
fluorescens SBW25]
Length = 770
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 60/270 (22%), Positives = 104/270 (38%), Gaps = 28/270 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------SSSGPSK 228
+V+++L+ QV ++ I EV D + G Q S +
Sbjct: 441 EVIDMLDQR-RAQVVIESLIVEVGEDDATEFGVQWQAGNLAGKGGFGGVNLGGSGVNSTP 499
Query: 229 SFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ G G + G+ + + AL+ L+ P L + +
Sbjct: 500 TSKTSIDVLPKGLNVGLVNGTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNE 559
Query: 284 SASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+AS G + T +S+ +V + G+ L+ P + G + L I E
Sbjct: 560 AASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQE 619
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
VS + R DT++ L G +VL GLL+D Q + +P LS IP LG
Sbjct: 620 VSTVDTRASVDAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSDIPGLG 679
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425
ALFRN + + +T + + P++++
Sbjct: 680 ALFRNEKRSVNKTNLMVFLRPYIIRDSGAG 709
>gi|239907473|ref|YP_002954214.1| general secretion pathway protein D precursor [Desulfovibrio
magneticus RS-1]
gi|239797339|dbj|BAH76328.1| general secretion pathway protein D precursor [Desulfovibrio
magneticus RS-1]
Length = 685
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 57/272 (20%), Positives = 97/272 (35%), Gaps = 33/272 (12%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+V+ L+ A QV ++ I EV D G ++ SG +
Sbjct: 372 DQVVKKLD-APRKQVYVEALIMEVSTDKSVSFGVNLNVANKQSGLGDGKYGGLLFASSNP 430
Query: 242 GGDFSVKGVLDRF-----------------------SFETVLHALERATAIRTLAEPTLT 278
G S+ F + + +++A + + +A P L
Sbjct: 431 AGYESLYNSSGAFVPPAGGSLGGLAFPVKIGEVIYSNLQAMINASKSDNSFNIIATPQLM 490
Query: 279 AISGQSASFTSGGQHLYKTVSSST------GATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ + A+ T Y T D G L TP + I L++
Sbjct: 491 TLDNEEATITVAENRPYLTSQDVGQSTTDRPYQRFDYKDVGTTLKVTPQINEGDSIKLKV 550
Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ E S V P+ R R +TT+ +G TIVL+GL+ + +P L
Sbjct: 551 KQETSRIDETVTKETGALQPTTRKRVTETTIMCRNGETIVLSGLIGKSRAEGNSKVPGLG 610
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+P++G LF+N E T +++ TP + P
Sbjct: 611 DVPVVGWLFKNKSVADERTNLYVFITPRITAP 642
>gi|86147852|ref|ZP_01066158.1| MSHA biogenesis protein MshL [Vibrio sp. MED222]
gi|85834379|gb|EAQ52531.1| MSHA biogenesis protein MshL [Vibrio sp. MED222]
Length = 562
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 64/320 (20%), Positives = 116/320 (36%), Gaps = 44/320 (13%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
++E ++ G +++ + +A + + + + S+K + Q
Sbjct: 227 QLEAAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIREVREFLGISQKRLQR-------Q 279
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVS 240
V L+ I EV Q G + SS+G + + G +
Sbjct: 280 VILEAKIMEVTLSDGYQQGINWTKMFSSNGTNYTLGMGSIVKNAAGTIIPGKLPGMDPIG 339
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V+ SFE VL ++ + L+ P +TA + Q A G + T S
Sbjct: 340 TALGGQSNLVVSGGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGIDKYFVTNLS 399
Query: 301 ST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVI 341
S+ +T G+ L TP + G + L + V
Sbjct: 400 SSVGSGDNANVAPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGS 459
Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+P +R++D+ + G +V+ GL+K + + +P L IP LG LFR
Sbjct: 460 TTGVVTLPLAKSSIRESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFR 519
Query: 400 NSRFNREETEIFIAATPFLV 419
N+ ++TE+ I P +V
Sbjct: 520 NTSQLTQKTELVILLKPTVV 539
>gi|319761377|ref|YP_004125314.1| general secretion pathway protein d [Alicycliphilus denitrificans
BC]
gi|317115938|gb|ADU98426.1| general secretion pathway protein D [Alicycliphilus denitrificans
BC]
Length = 767
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 78/329 (23%), Positives = 126/329 (38%), Gaps = 25/329 (7%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L G VR + D +R L ++ R + A K QV ++ +I EV
Sbjct: 449 LEGNVRVVADDKRNALLIRAPRAEYRRIEQALRELDK--------APTQVLIEASIVEVS 500
Query: 207 RDILKQIGFQHSITGSSSGPSKS---FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
+ G + I S SG + G + FS + + L+AL
Sbjct: 501 LTGNLKYGVEWFIQNSLSGDRTGQALLNMNNSGSIGPQQPGFSYTILNKAGAVRATLNAL 560
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----THDYGVVLHFT 319
+ +R L+ P++ + SA+ G Q K ++ T VT D GV+L T
Sbjct: 561 AANSQLRVLSNPSVLVLDNHSATILVGKQQPIKQSTTVTTGNLVTESIVYKDTGVMLSVT 620
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
P+V + G + L I +V++ A S+ R+ + V + SG IVL G++ ++
Sbjct: 621 PSVNAGGLVTLDINQQVTDVGDVDAATGQRSFLTRQIQSRVAVRSGDPIVLGGVMSENQS 680
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
G+P L +P+LGALF TE+ + TP + DD
Sbjct: 681 TGNSGVPGLRDVPVLGALFSTDTTTSARTELLVVLTPR----------ALEDDDALRAAS 730
Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
A+ R + G + GA
Sbjct: 731 AEMRDRMRTMSLQGLLVPASAAKPPEGGA 759
>gi|114778365|ref|ZP_01453212.1| probable pilQ; fimbrial type-4 assembly signal peptide protein
[Mariprofundus ferrooxydans PV-1]
gi|114551328|gb|EAU53885.1| probable pilQ; fimbrial type-4 assembly signal peptide protein
[Mariprofundus ferrooxydans PV-1]
Length = 793
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 91/241 (37%), Gaps = 17/241 (7%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------- 245
QV ++ I E + +G + T +S+G + D
Sbjct: 548 QQVMVEARIVEATDTFSRDLGVKWGGTLNSNGGGYTHTVTGAASAPQNVVDLGAAVKAGA 607
Query: 246 ------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
++ + + + L A E I+ ++ P + + Q A Q ++ +
Sbjct: 608 GGAIGYTLGTLNNALNLNLELSAAEAEGQIKVVSSPRVFTSNLQEALIEQDQQIPFQVTT 667
Query: 300 SSTGAT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
+ST S + L TP + + RI +++ V++ N P+ ++ T
Sbjct: 668 ASTPPVVSYQLKSAKLTLKVTPQITADKRIIMQLV--VNKDTPVANTVGPPTIDKKQIMT 725
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ + +G T+VL G+ G+P L IP +G F+ + R E+ I TP +
Sbjct: 726 KLLVKNGETMVLGGIYTQTTSDQVNGVPGLQNIPFIGNFFKRKQKVRNRNELLIFITPTI 785
Query: 419 V 419
+
Sbjct: 786 I 786
>gi|152986624|ref|YP_001348780.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
gi|150961782|gb|ABR83807.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
Length = 758
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 90/457 (19%), Positives = 166/457 (36%), Gaps = 47/457 (10%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
++T + + P+ L + ANA +++ I + + I L++ +
Sbjct: 136 RQTSVVELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIESIVRSLDQAGEHDYSI 195
Query: 65 -DVQDVLVSD-PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
D++ V++ D V GKN V+ + +L +
Sbjct: 196 YDLRHAWVAEIAEVLDQSVTPAA-----GKNAATVQVLADSRSNRLVLLGPPQARARLLR 250
Query: 123 LEMTL---RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR--------------AVELSE 165
L +L A+S + D + + I +S R A+ ++
Sbjct: 251 LAQSLDVPSSRSANSRVIRLRHGDAKTIASTLGEIGESLREGGDQGQRRSGKRGALVRAD 310
Query: 166 TFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
L+ ++++ L++ Q+ ++ I E+ ++ + +G Q ++ G
Sbjct: 311 ESLNALVILADPQEVGLFEEIVRQLDVP-RAQLLVEAAIVELTGELNEALGVQWAMRGGH 369
Query: 224 SGPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLA 273
+ SFA G L F ++ AL R + L+
Sbjct: 370 AVGGTSFAGSGLSIGTLLGALQSGKPPAELPDGAIVGLGSRDFGALITALTRNSNSNLLS 429
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPG 326
P+L + Q A G ++T S SS T+V D GV L TP +
Sbjct: 430 TPSLLTLDNQKAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVTLKVTPHIGDDR 489
Query: 327 RIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
+ L I+ E+S R +TV G IVL GL++DD+ +
Sbjct: 490 MLRLEIEQEISSIAPAATLAAKTVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDVVRSDS 549
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+PLL IP +G LFR++R R + + + P +V+
Sbjct: 550 RVPLLGDIPGVGRLFRSTRDTRVKRNLMVFLRPSIVR 586
>gi|293604906|ref|ZP_06687303.1| general secretion pathway protein D [Achromobacter piechaudii ATCC
43553]
gi|292816734|gb|EFF75818.1| general secretion pathway protein D [Achromobacter piechaudii ATCC
43553]
Length = 791
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 58/273 (21%), Positives = 103/273 (37%), Gaps = 30/273 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---AADFGGKFV 239
+V++ L+ QV ++ I EV + G Q + + + + GG +
Sbjct: 415 EVIDQLDQR-RAQVLVESLIVEVSEQAAAEFGIQWMTGAGNINSNGTSFIGGTNLGGSGI 473
Query: 240 SEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISG 282
+ G S+ + + + A++ L+ P L +
Sbjct: 474 TGNGPTSIDALGSGLSLGVVKGTVDVLGNQVINLGVLARAMQNTGEANILSTPNLLTLDN 533
Query: 283 QSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
QSAS G + T SS ++ D G+ L+ P + G + L I
Sbjct: 534 QSASILVGKTVPFVTGQYVTSGSNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQ 593
Query: 335 EVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
EVS + R DT+V + G IVL GLL+D++ +P L +P+
Sbjct: 594 EVSSIDESRSTPTTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLTSNSVPGLGSLPV 653
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+G+LFR R +T + + P++V+
Sbjct: 654 IGSLFRYDTRKRTKTNLMVFLRPYVVRDANRSA 686
>gi|71908829|ref|YP_286416.1| type II and III secretion system secretin [Dechloromonas aromatica
RCB]
gi|71848450|gb|AAZ47946.1| type II and III secretion system protein:NolW-like:Secretin/TonB,
short N-terminal [Dechloromonas aromatica RCB]
Length = 667
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 75/438 (17%), Positives = 160/438 (36%), Gaps = 59/438 (13%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV-------DVQDVL--VS 72
+ P E A + + + ++ +K I + V ++D+L +
Sbjct: 180 AALAKPVTLEFRDASLKSVFEVLSRASGLNFVFDKDIKGDIKVTLFVRNSPLEDILRLIL 239
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
+ D + + ++ ++ + ++ L D+ + ++
Sbjct: 240 TTNQLDKRQLNDNSFLIYPNTPAKSK-----EYQELVVRNFYLANTDVKQAQNLVKTVAK 294
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
++ + + +++ A+ L +++++ L++A
Sbjct: 295 SKDVFADEKLNLLIVKDTP-------DAMRLV-----------------ERLIDSLDLAE 330
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVS 240
+ V L+V + EV R L Q G T +++ + GG +
Sbjct: 331 PE-VMLEVEVLEVTRSRLNQFGVDWPDSVGYGLLQDTLSTTTATAAGYTTTVTPGGTLAN 389
Query: 241 EGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ +G L F + L+ + LA P + + + A G + T
Sbjct: 390 GYINLRNRGGLTSFVANPGLTLNLKGQNADTNVLANPRIRVKNREKAKVHIGDKLPVFTT 449
Query: 299 SSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYR 352
+++ + SV D G+ L P V + +++ EVS V +
Sbjct: 450 TATANVGVSASVNYLDVGLKLDVEPNVTLDDEVSIKVGLEVSSIVKEITGPSNSLAYQIG 509
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R A TT+ L G T VLAGL+ D+ ++ IP L +IP++G F + + +TEI +
Sbjct: 510 TRSASTTLRLKDGETQVLAGLISDEERKTTSHIPGLGEIPVVGRAFGSHKDTSTKTEIIL 569
Query: 413 AATPFLVKPVAMRDLSRP 430
TP +V+ + + +P
Sbjct: 570 LITPRIVRNIHRPEYVQP 587
>gi|152985006|ref|YP_001347404.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
gi|150960164|gb|ABR82189.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
Length = 658
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 86/448 (19%), Positives = 155/448 (34%), Gaps = 54/448 (12%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT-- 75
P L + ANA +I+ I + + + L++ D V +
Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQ-------KGSHDYSVINLRHG 217
Query: 76 -KADV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RF 130
D V + K A VI + ++ + L +L
Sbjct: 218 WVMDAAEVLNSAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTAR 277
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------------------ 172
A++ + +D L + I + + S G
Sbjct: 278 SANTRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQSGGGRPSNILIRADESTNALVL 337
Query: 173 -RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ ++ + ++ L++ QV ++ I E+ DI +G Q +I G +++
Sbjct: 338 LADPDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTRTSF 396
Query: 232 ADFGGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ G + + SF ++ AL + L+ P+L +
Sbjct: 397 GNTGLSIGTLLQALKDDKIPNPLPDGAVVGIGSSSFGALVTALSANSKSNLLSTPSLLTL 456
Query: 281 SGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
Q A G + T S SS T+V D GV L TP + + L I+
Sbjct: 457 DNQKAEILVGQNVPFNTGSYTTNSEGSSNPFTTVERKDIGVNLKVTPHINDGAALRLEIE 516
Query: 334 TEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
E+S V + R +T+ +G IVL GL++DD+ Q + +PLL I
Sbjct: 517 QEISSIAPNVQQVSDTDIITNKRSIKSTILAENGQVIVLGGLIQDDVVQAESKVPLLGDI 576
Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
P LG LFR+++ + + + P +V
Sbjct: 577 PWLGRLFRSTKDTHTKRNLMVFLRPTVV 604
>gi|320155211|ref|YP_004187590.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O]
gi|319930523|gb|ADV85387.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O]
Length = 531
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 65/304 (21%), Positives = 112/304 (36%), Gaps = 34/304 (11%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
++ G +++ + +A ++ R ++ + + + QV L+ I
Sbjct: 210 GLIGSGKGQSVVVTPQAGVITVRAFPDEIREV------RQFLGISQERMQRQVILEAKIL 263
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-------DFSVKGVLDRFSF 256
EV Q G S +S G S S + G V G + SF
Sbjct: 264 EVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLPGLDAIGSLLGGQTNVTISDGSF 323
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
E VL + + L+ P +TA + Q A G Y T SS +
Sbjct: 324 EAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQYYVTALSSNVGNDDKSKAVPEVT 383
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
+T G+ L TP + G + L + V E ++ +R+
Sbjct: 384 LTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETKQLNLGGDFQNVTLPLAKSSIRE 443
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+D+ + G +V+ GL+K + + +P IP LG LFRN+ ++TE+ I
Sbjct: 444 SDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGDIPALGHLFRNTSNLTQKTELVILLK 503
Query: 416 PFLV 419
P +V
Sbjct: 504 PTVV 507
>gi|37524117|ref|NP_927461.1| hypothetical protein plu0091 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36783540|emb|CAE12386.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 344
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 7/232 (3%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
QV + I R+ L ++G + + + + +
Sbjct: 114 QQVQITAHIVTSSREALHELGIYWGMPIGEQINTSTGINRLNINQAANDNMHRFAFNIAR 173
Query: 253 --RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
E L ALE+ + +A P LTA Q AS G VS ++V
Sbjct: 174 IHTSLLEMELSALEQENQLDIIASPRLTASHQQLASIKQGSDIP--YVSQEKEKSTVQFK 231
Query: 311 DYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
+ + + TP +L +I L+I + I G+ + ++ T V + +G T+
Sbjct: 232 EAVLGMEVTPHILRKNKIRLSLKISQNMPGISISQGGGENLTIDKQEIITQVTVKNGETL 291
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+L G+ + + + +P LS IP+LG+LF E+ I TP L+
Sbjct: 292 ILGGIFQQKKGEQTQKVPYLSDIPLLGSLFNQKAHKHSRRELVIFITPQLMD 343
>gi|323491669|ref|ZP_08096847.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546]
gi|323314031|gb|EGA67117.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546]
Length = 551
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 67/320 (20%), Positives = 124/320 (38%), Gaps = 46/320 (14%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGE 193
++E ++ G +++ S +A ++ R ++ N L +
Sbjct: 216 QLESAVSQLIGSGSGQSVVVSPQASVITVRAFPDEIR---------EIRNFLMVSQQRMH 266
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250
QV L+ I EV Q G S +S+G + + K + G ++ G+
Sbjct: 267 RQVILEAKILEVTLSDGYQQGINWSKAFTSNGTNYTLGQGSTIKDSTTGLPVTLPGLDAI 326
Query: 251 -----------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ SFE VL + + L+ P +TA + Q A G + T
Sbjct: 327 GTLLGGQSNLVISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDF 386
Query: 300 SSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------- 341
S+ + +T G+ L TP + G + L + V +
Sbjct: 387 SANTDSSSSTTNTTTDIELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVTQEQKEINY 446
Query: 342 GVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
G N+ +P + +R++D+ + G +V+ GL+K + + +P L +P LG LFR
Sbjct: 447 GSNSLTLPLATSSIRESDSVIRAQDGDVVVIGGLMKSNTVEQVSKVPFLGDVPALGHLFR 506
Query: 400 NSRFNREETEIFIAATPFLV 419
N+ ++TE+ I P +V
Sbjct: 507 NTSQLTQKTELVILLKPSVV 526
>gi|117619719|ref|YP_857681.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117561126|gb|ABK38074.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 733
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 65/311 (20%), Positives = 113/311 (36%), Gaps = 30/311 (9%)
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
+ +L + S+ AV + E ++ S+ K M + QV
Sbjct: 420 AKASEVAALLSSESTKLLSSKGAVSVDERTNVLVVKDTADVISNIKRMLDILDIPVKQVV 479
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS----------- 246
++ + + + +G + +T + + + G S
Sbjct: 480 IEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGTIEGNDSSGNNNGGSTITRPGVDDRL 539
Query: 247 ----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
V + D + L ALE+ + +A P +T + + A G
Sbjct: 540 NVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEIIASPRVTTANQKPALIEQG 599
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM 348
+ Y SS+GATSVT + L TP + R+ L + + GD
Sbjct: 600 TEIPYVES-SSSGATSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDA 658
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
S + T V + +G T+VL G+ + I+ +PLL IP LG LFR + ++
Sbjct: 659 VSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSENKKR 718
Query: 409 EIFIAATPFLV 419
E+ I TP +V
Sbjct: 719 ELLIFVTPKIV 729
>gi|227824391|ref|ZP_03989223.1| type II and III secretion system protein [Acidaminococcus sp. D21]
gi|226904890|gb|EEH90808.1| type II and III secretion system protein [Acidaminococcus sp. D21]
Length = 424
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 72/256 (28%), Positives = 114/256 (44%), Gaps = 15/256 (5%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + ++KV+ ++ + QVTL+ I ++ D +++G Q +G S+
Sbjct: 141 GSPGDQARAQKVLARMD-RLQKQVTLEARILSLQEDASRELGLQWKWSGLPQQNSEETD- 198
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
G G SF+ +L AL + + LA P + + G+ G
Sbjct: 199 ----------GGTFHLGHGYTGSFQGILSALCQKGKAKVLATPRIVTVPGKEGKIFIGDH 248
Query: 293 HLYKTVSSSTGATSV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
T S G T+ D G+ L +TP V G I + TEVS P + ++
Sbjct: 249 IPVVTEKVSNGTTTTSTEYVDAGIRLSYTPIVGPDGVITASVHTEVSTPTL-ISELHNYR 307
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
R ADT V L G T+V+ GL+ D+ Q+ E IPLLSK+P+LG LF + TE+
Sbjct: 308 ITSRTADTNVRLLEGETLVIGGLISDEEQKRLETIPLLSKLPLLGNLFTFRSRKKTRTEV 367
Query: 411 FIAATPFLVKPVAMRD 426
+ TP+L +P
Sbjct: 368 VMLLTPYLTEPGRSPA 383
>gi|238758713|ref|ZP_04619887.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236]
gi|238703010|gb|EEP95553.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236]
Length = 437
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 52/231 (22%), Positives = 98/231 (42%), Gaps = 6/231 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
QV L I + R+ L ++G + + ++ + +F + + F+V +
Sbjct: 206 QQVQLAAHIVTMSRENLHELGVRWGMDEATQPRALRVNNFNVNLPLPNSALSAGFNVARI 265
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
R + ALE+ + +A P L Q+AS G Y G ++
Sbjct: 266 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGVPTIEFK 324
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
+ + + TP +L G+I L ++ + P + + + ++ T + + G TI
Sbjct: 325 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAIKRGDSEALLIDKQEIKTQITVNDGETI 384
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VL G+ + Q +P+L+ IP+LGALF+ + E+ I TP L+
Sbjct: 385 VLGGIFQQKNNQGINKVPILADIPLLGALFKQDVRAQTRRELVIFITPRLI 435
>gi|122091112|emb|CAL13995.1| putative membrane transport protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 371
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 6/233 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
QV L I + R+ L+++G + + + S F + + F+V +
Sbjct: 140 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTASLRMSDFNVNLPLPNSAVSAGFNVARI 199
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
R + ALE+ + +A P L Q+AS G Y GAT++
Sbjct: 200 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 258
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
+ + + TP +L G+I L ++ + P + + + ++ T + + G TI
Sbjct: 259 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 318
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
VL G+ + Q +PLL+ IP LG LF+ + E+ I TP L+
Sbjct: 319 VLGGIFQQKSSQGVNKVPLLADIPWLGGLFKQDTQQQSRRELVIFITPKLISA 371
>gi|171318673|ref|ZP_02907818.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5]
gi|171096140|gb|EDT41064.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5]
Length = 553
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 57/295 (19%), Positives = 108/295 (36%), Gaps = 34/295 (11%)
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
+ L Q ++ +++ NLL + QV
Sbjct: 229 RALDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRIAQIAGLIDAIDRPSRQVR 288
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGGD 244
++ I E + + +G + ++ + AA G F +
Sbjct: 289 IEARIVEGEQGFSRNLGARVALRAQGRAPAADGAASASDTRNALDLAARPLGGFEAATAG 348
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
F++ + L ALE + ++ P + A G + Y+ G
Sbjct: 349 FTLFAAPLSRVLDVELSALEAQGRGQIISSPRVVTADRVKAIVEQGSELPYQ-AKVGNGV 407
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P + GR+ L + +V++ IG P+ + T VE+ +
Sbjct: 408 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEN 465
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V
Sbjct: 466 GGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSELVVFITPTVV 520
>gi|229590685|ref|YP_002872804.1| general secretion pathway protein D/Q [Pseudomonas fluorescens
SBW25]
gi|229362551|emb|CAY49458.1| general secretion pathway protein D/Q [Pseudomonas fluorescens
SBW25]
Length = 788
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 69/320 (21%), Positives = 120/320 (37%), Gaps = 43/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--------------KKVMNLLNIAGE 193
G + Q +A + S F + Q +++ ++V+++L+
Sbjct: 410 SGGNSSSQAGAQATDQSVAFSAGGVTIQADATTNTLLISAPEPLYRNLREVIDMLDQR-R 468
Query: 194 DQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDF 245
QV ++ I EV D + G Q + G ++ + G
Sbjct: 469 AQVVIESLIVEVGEDDANEFGVQWQSGDLAGKGVIGGTNLGGSGLQTGGLTSIDALPGGL 528
Query: 246 SVKGVLDRFS---------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
SV + + + + AL+ L+ P L + ++AS G +
Sbjct: 529 SVGYLSGTVNIPGVGNVMDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 588
Query: 297 TV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNA 345
+ +S+ +VT + G+ L+ P + G + L I EVS
Sbjct: 589 SGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQEVSSIDERASSSAT 648
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
R DT++ L G +VL GLL+D Q E +P LS IP LGALFRN R
Sbjct: 649 SAGVVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNEAVPWLSSIPGLGALFRNERRAT 708
Query: 406 EETEIFIAATPFLVKPVAMR 425
+T + + P++++ A
Sbjct: 709 TKTNLMVFLRPYIIRDSAGG 728
>gi|86157073|ref|YP_463858.1| type II and III secretion system protein, secretin
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85773584|gb|ABC80421.1| type II and III secretion system protein, secretin
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 882
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 64/310 (20%), Positives = 110/310 (35%), Gaps = 45/310 (14%)
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
D + G V T + T + A ++ ++ L+ QV ++ I
Sbjct: 572 DVLSERGSVSTDE---------RTNVLIVKDIPEALVRAEGLVRNLDTEIP-QVLIESRI 621
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------- 246
E + +Q+G Q S + + + VS G
Sbjct: 622 VEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQAPNQGTSATPNYAVN 681
Query: 247 ----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ F+ L ALE ++T++ P + I + A+ G
Sbjct: 682 LPAAIGQGAGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATIDNKEATI--G 739
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMP 349
+S + T + + L TP V + G I L+I+ + P + P
Sbjct: 740 QGISIPFSQTSASGVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNSSLTGSNGQP 799
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
S R+A+T V + G T V+ G+ +P LSKIP+LG FR+ + TE
Sbjct: 800 SISKREAETEVLVKDGETTVIGGIYTRSTASKTAAVPFLSKIPLLGFFFRSDTNTDDHTE 859
Query: 410 IFIAATPFLV 419
+ I TP ++
Sbjct: 860 LLIFITPRIL 869
>gi|220915798|ref|YP_002491102.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953652|gb|ACL64036.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1]
Length = 887
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 64/310 (20%), Positives = 110/310 (35%), Gaps = 45/310 (14%)
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
D + G V T + T + A ++ ++ L+ QV ++ I
Sbjct: 577 DVLSERGSVSTDE---------RTNVLIVKDIPEALVRAEGLVRNLDTEIP-QVLIESRI 626
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------- 246
E + +Q+G Q S + + + VS G
Sbjct: 627 VEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQAPNQGTSSTPNYAVN 686
Query: 247 ----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ F+ L ALE ++T++ P + I + A+ G
Sbjct: 687 LPAAIGQGSGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATIDNKEATI--G 744
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMP 349
+S + T + + L TP V + G I L+I+ + P + P
Sbjct: 745 QGISIPFSQTSASGVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNSSLTGSNGQP 804
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
S R+A+T V + G T V+ G+ +P LSKIP+LG FR+ + TE
Sbjct: 805 SISKREAETEVLVKDGETTVIGGIYTRSTASKTASVPFLSKIPLLGFFFRSDTNTDDHTE 864
Query: 410 IFIAATPFLV 419
+ I TP ++
Sbjct: 865 LLIFITPRIL 874
>gi|152989153|ref|YP_001346800.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
gi|150964311|gb|ABR86336.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
Length = 634
Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 18/262 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
V+ L+ QV ++ I EV DI + +G Q + SF
Sbjct: 325 DNVIAQLD-RPRAQVLVEAAIVEVSGDINEALGVQWAARAGDVAGGTSFGNGGLTIGSLL 383
Query: 241 -------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
+ +F ++ AL + L+ P+L + ++A G
Sbjct: 384 NQEAGKRPNLPDGAIIGIGSRNFGALVTALSSDSNNNLLSTPSLLTLDNEAAEILVGQNV 443
Query: 294 LYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++T S + T+V D G+ L TP + + L+++ E SE
Sbjct: 444 PFQTGSYTTDSAGASNPFTTVERKDVGITLKVTPHINEGDTLRLKVEQESSELASAPAGI 503
Query: 347 DMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
R +T+ G IV+ GL+KD+++ +PLL IP+LG LFR+++
Sbjct: 504 STSDVITNKRSVKSTILADDGQIIVIGGLIKDNVKTQVSKVPLLGSIPLLGRLFRSTKDV 563
Query: 405 REETEIFIAATPFLVKPVAMRD 426
E+T + + P L++ A D
Sbjct: 564 NEKTNLMVFLRPTLLRNTANAD 585
>gi|157373684|ref|YP_001472284.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis
HAW-EB3]
gi|157316058|gb|ABV35156.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis
HAW-EB3]
Length = 567
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 63/334 (18%), Positives = 115/334 (34%), Gaps = 48/334 (14%)
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
L + + V + V + G ++ + ++ +ET L
Sbjct: 228 TTKTDFWGELEKTLVSIVGSTGGGRQVVVTPQAGLVTVRGYPNELRQVRTFLQTAETHLQ 287
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
QV L+ I EV Q G Q G +
Sbjct: 288 ------------------------RQVILEAKILEVTLSDGYQQGIQWDNVLGHVGSTDI 323
Query: 230 FAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
G ++ + +F T+++ L+ + L+ P +TA + Q
Sbjct: 324 TFGTSENTEGLGDLITNAIGGVTSLSVKGSNFNTMINLLDTQGDVDVLSSPRVTASNNQK 383
Query: 285 ASFTSGGQHLYKTVSS----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
A G + T S +T +T G+ L TP + G I L I
Sbjct: 384 AVIKVGTDEYFVTDVSSTTVAGTTPVTTPEVELTPFFSGIALDVTPQIDGEGNILLHIHP 443
Query: 335 EVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
V + + +R++DT ++ +G +V+ GL+K + +++ +
Sbjct: 444 SVIDIKEQTKVIKISGSSLELPLAQSDIRESDTVIKAKTGDVVVIGGLMKSENIEVESKV 503
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
PLL IP++G LF N + ++TE+ I P +V
Sbjct: 504 PLLGDIPLVGELFTNRSKSLKKTELVILLKPTVV 537
>gi|28899478|ref|NP_799083.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633]
gi|153839930|ref|ZP_01992597.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810]
gi|28807714|dbj|BAC60967.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633]
gi|149746550|gb|EDM57538.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810]
gi|328471385|gb|EGF42280.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus 10329]
Length = 547
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 63/304 (20%), Positives = 111/304 (36%), Gaps = 30/304 (9%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
+L V + S + + T + + ++V L + + QV L+ I
Sbjct: 220 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 279
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256
EV Q G S +S G S S + + + +F
Sbjct: 280 LEVTLSDGYQQGINWSNLSASIGNSGSIIVNRPASALPPLDAIGTLLGGQTNVTISDGNF 339
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
E VL+ + + L+ P +TA + Q + G + T SS
Sbjct: 340 EAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQYFVTELSSNAGNGENSNAVPEVE 399
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
+T G+ L TP + + G + L + V E V ++ +R+
Sbjct: 400 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSIRE 459
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+D+ + G +V+ GL+K + +P L +P LG LFRN+ ++TE+ I
Sbjct: 460 SDSVIRAKDGDVVVIGGLMKQQNVEQVSKVPFLGDVPALGHLFRNTSNVTQKTELVILLK 519
Query: 416 PFLV 419
P +V
Sbjct: 520 PTVV 523
>gi|291086346|ref|ZP_06355526.2| hypothetical protein CIT292_10180 [Citrobacter youngae ATCC 29220]
gi|291067951|gb|EFE06060.1| protein transport protein HofQ [Citrobacter youngae ATCC 29220]
Length = 386
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 12/331 (3%)
Query: 100 ILIGHDGKQMLNLDILIERDIAH----LEMTLRRFIADSN--IRVEMVSDTVVLHGMVRT 153
+++ +G + + + + A + ++ + N I ++ + +
Sbjct: 54 LVLRQEGNILHVHSVQWQSENASRQENEQARMQASLPLENRSIVLQYADAAELAKAGEKL 113
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ T N ++ +K + +++ +QV L I + L+++
Sbjct: 114 LSAKGSMTVDKRTNRILLRDNSVVLNALEKWVAQMDLP-VEQVELAAHIVTINEKSLREL 172
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIR 270
G + S+ + + V + R + E L ALE+ +
Sbjct: 173 GVKWSLADAQQPGAVGNVTTLASDLSVSAATSRVGFNIGRINARLLELELSALEQKQQLD 232
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+A P L A Q AS G + Y+ S +GATSV + + + TPTVL GRI L
Sbjct: 233 IIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRL 292
Query: 331 R--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ I V V+ G++ + ++ +T VE+ SG TI L G+ + + +PLL
Sbjct: 293 KLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETIALGGIFSHKNKAAADSVPLL 352
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP LG+LFR+ E E+ + TP LV
Sbjct: 353 GDIPWLGSLFRHDGKEDERRELVVFITPRLV 383
>gi|283956850|ref|ZP_06374323.1| putative type II protein secretion system D protein [Campylobacter
jejuni subsp. jejuni 1336]
gi|283791576|gb|EFC30372.1| putative type II protein secretion system D protein [Campylobacter
jejuni subsp. jejuni 1336]
Length = 470
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S K + L + QV + V+I V + G +
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIGLNSQVNNE 250
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
F +F + G G+ +F+++++ L + L+ P L A++ Q A + G
Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309
Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
Y+ SS G + TT G++L+ P + G+I LRI +S+
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369
Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ P +K + V++ + T++L GL+ D K I LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+LF+ N + TEI TP +V V L
Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461
>gi|95929094|ref|ZP_01311839.1| type II and III secretion system protein [Desulfuromonas
acetoxidans DSM 684]
gi|95134995|gb|EAT16649.1| type II and III secretion system protein [Desulfuromonas
acetoxidans DSM 684]
Length = 553
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 72/346 (20%), Positives = 127/346 (36%), Gaps = 64/346 (18%)
Query: 114 ILIERDIAHLEMTLRRFIADSN---IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
+ L+ L+ + N + V+ + VV+ + +++ +L
Sbjct: 211 VSESDFWTGLQQALQSLVGRENGRAVIVQPQAGLVVVR-------ALPQELQIVTDYL-- 261
Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
N + + QV L+ I EV + Q G + + + +
Sbjct: 262 ---------------NKTQVTLQRQVILEAKIIEVELNDGYQTGINWAGLIHNGNNTATI 306
Query: 231 AADFGGKFVSEGG------------------DFSVKGVLDRFSFETVLHALERATAIRTL 272
GG ++S+G L FE + A++ ++ L
Sbjct: 307 GQVGGGTYLSDGVSEIAGTNPLVNGLVTSAFGGVFSTTLQFDDFEAFIEAVKSQGDVQVL 366
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----------THDYGVVLHFTPTV 322
+ P ++ ++ Q A G + T SS T T G+ L TP +
Sbjct: 367 SSPRISTLNNQKAVIKVGTDEFFVTDISSDTVTGTTTTTTPDITLTPFFSGIALDVTPQI 426
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSY---------RVRKADTTVELPSGGTIVLAGL 373
GR+ L + VSE V + VR++DT VE SG +V+ GL
Sbjct: 427 SGQGRVTLHVHPTVSEVVDQTKVITVAGQAQSLPLAFSSVRESDTIVEARSGQVVVIGGL 486
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+K+ + G+PLL IP LG LFR+ + + ++E+ I P +V
Sbjct: 487 MKNSDTREGAGVPLLGDIPGLGHLFRHQKNSTSKSELIILLKPLVV 532
>gi|290512027|ref|ZP_06551395.1| protein transporter HofQ [Klebsiella sp. 1_1_55]
gi|289775817|gb|EFD83817.1| protein transporter HofQ [Klebsiella sp. 1_1_55]
Length = 413
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 5/230 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---FVSEGGDFSVKGVL 251
QV L I + L+++G + + + P + G +
Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNIGKI 240
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ E L ALER + +A P L A Q AS G + Y+ S +GATSV +
Sbjct: 241 NGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 300
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ + TPTVL GR+ L+++ + P V+ + G+ + ++ +T VE+ SG T+
Sbjct: 301 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETLA 360
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++
Sbjct: 361 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410
>gi|149926612|ref|ZP_01914872.1| pili assembly protein PilQ [Limnobacter sp. MED105]
gi|149824541|gb|EDM83757.1| pili assembly protein PilQ [Limnobacter sp. MED105]
Length = 681
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 57/244 (23%), Positives = 104/244 (42%), Gaps = 12/244 (4%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------KSFAADFG 235
++N L+ QV ++ + + + +G + + + P S
Sbjct: 439 IVNGLD-KPVKQVMIEARVVLADTSVSRDLGIRLRALSARADPGFDEVGDQFGSGNFVNT 497
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
G + +++ L ALE +RT++ P + + + A G + Y
Sbjct: 498 GVENATNLGYTLFNANSTRLINLQLRALELENKVRTVSNPRVITSNKEPALIEQGTEIPY 557
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
+ +SS GAT+ + + L TP + G + L +V++ IG+ + P+ R+
Sbjct: 558 QIATSS-GATATEFKEANLKLAVTPQIAPDGTVLLD--VDVAKDSIGIETSNGPAIDTRR 614
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T V + GGT+VL G+ ++D L + P L IP LG LFR +R E+ I T
Sbjct: 615 VKTKVLVSDGGTVVLGGIFEEDDNVLNDKTPFLGDIPGLGVLFRGKNESRRRAELLIFLT 674
Query: 416 PFLV 419
P ++
Sbjct: 675 PVVL 678
>gi|299768549|ref|YP_003730575.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1]
gi|298698637|gb|ADI89202.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1]
Length = 721
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 48/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
K+++LL++ + QV ++ I K++G + I + +
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502
Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
G G + F + L AL+
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYG 562
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
++ P + Q A +G Q Y++ ++S + + D + L+ TP++ G+
Sbjct: 563 EVISTPKVMTADKQPAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I +++ G + +T V + +G T++L G+ + + +P
Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNQINTNVLVNNGETVILGGVFEQTTTNSQTKVPF 681
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP+LG LFR + ++ E+ I TP +V
Sbjct: 682 FGDIPVLGHLFRKDVKSDDKQELLIFVTPRIV 713
>gi|229576793|ref|YP_001008121.2| putative outer membrane porin HofQ [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 376
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 6/233 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
QV L I + R+ L+++G + + + S F + + F+V +
Sbjct: 145 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTASLRMSDFNVNLPLPNSAVSAGFNVARI 204
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
R + ALE+ + +A P L Q+AS G Y GAT++
Sbjct: 205 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 263
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
+ + + TP +L G+I L ++ + P + + + ++ T + + G TI
Sbjct: 264 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 323
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
VL G+ + Q +PLL+ IP LG LF+ + E+ I TP L+
Sbjct: 324 VLGGIFQQKSSQGVNKVPLLADIPWLGGLFKQDTQQQSRRELVIFITPKLISA 376
>gi|325927911|ref|ZP_08189135.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
perforans 91-118]
gi|325541751|gb|EGD13269.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
perforans 91-118]
Length = 624
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 46/261 (17%), Positives = 98/261 (37%), Gaps = 27/261 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231
DQV ++ I + +G + + G+ +
Sbjct: 362 RPVDQVLIEGRIVIATDTFARDLGAKFGLGGTHTYGDNVATIGSGATGGGVAAGRGLNVN 421
Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ + + F+ + L AL++ ++ P + + + G
Sbjct: 422 LPTGAFTSGATAPSLAYTLLGSNFNLDLELSALQQEGRGEVISNPRIVTSNQREGVIKQG 481
Query: 291 GQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGV 343
+ Y TV+ TG +V + + L TPT+ + R+ L + EV + +
Sbjct: 482 REIGYVTVTGGTGGQAATPNVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVDQLIELP 541
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
G +PS R+ +T V + G T+V+ G+ + + +P L +P LG LF++
Sbjct: 542 LYGTVPSINRREINTAVLVDDGQTVVIGGVYEFTDRASVNKVPFLGDVPFLGNLFKSRGR 601
Query: 404 NREETEIFIAATPFLVKPVAM 424
+ + E+ + TP +++ +
Sbjct: 602 QKSKAELLVFITPKVLRVASA 622
>gi|206602610|gb|EDZ39091.1| Putative type II secretion system protein D [Leptospirillum sp.
Group II '5-way CG']
Length = 615
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 64/365 (17%), Positives = 118/365 (32%), Gaps = 47/365 (12%)
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+E TLR+ I + + + + TV + G V+ + +QR +++ L
Sbjct: 276 DKMEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIVRDQL------------ 323
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAADFGGKFV 239
+V ++ IAE+ G + + + G
Sbjct: 324 ------------RREVFFRIDIAEIDLTDKDAYGINWNALAHGVFNSTLALTGAGAGNAG 371
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
F V+ ALE + + +P + +SGQ S + Y
Sbjct: 372 LASTGGVTTPYGASFGSAAVIQALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQGE 431
Query: 300 S----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------G 342
+ + G+ L TPT L +I + V+ G
Sbjct: 432 YPFFAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQIHMHGTVVVNSLQQFVTIDIKG 490
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ P R T + G T+V+ GL+ + + +P L +IP+L LF
Sbjct: 491 IGTFQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWTVPFLGQIPVLKWLFSGYS 550
Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP-DDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
+ ++ TE+ + TP + + LS P D + D ++ + V
Sbjct: 551 YKKQVTELVVIITPEIRR---TPRLSSPRTDDFLNPDSPVYRKALPGSRPFSVPRLPHVP 607
Query: 462 GQNYK 466
G
Sbjct: 608 GYGSN 612
>gi|172059128|ref|YP_001806780.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6]
gi|171991645|gb|ACB62564.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6]
Length = 771
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 55/294 (18%), Positives = 102/294 (34%), Gaps = 35/294 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ I E+ +G Q +
Sbjct: 370 IQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQV 428
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER-------------- 265
+ A G + + + G L L +
Sbjct: 429 ASGQFLGGTNLAPTAGTGLGNSIVNLTSGGTAATTGLAANLAGLSQGLNIGWLHNMFGVQ 488
Query: 266 -----------ATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATS 306
+ L+ P L + + A G + ++S +
Sbjct: 489 GLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNT 548
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365
D G+ LH P + G + L++ TE S NA P++ R +T+ +G
Sbjct: 549 YDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNG 608
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 609 EIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 662
>gi|94500433|ref|ZP_01306965.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
gi|94427468|gb|EAT12446.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
Length = 524
Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 132/350 (37%), Gaps = 28/350 (8%)
Query: 98 NVILIGHDGKQMLNLDILIERDIAHL--EMTLRRFIADSNIRVEMVSD-----TVVLHGM 150
NV G G + + I + A T + S I+ SD + +
Sbjct: 145 NVTRTGSSGLTVSSGQITSKNTSADNVNSTTASQLSTASKIQTTASSDFWQTLKTSITTL 204
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
V + + + V+ S+ L S+ ++ ++ ++ QV ++ I EV +
Sbjct: 205 VGSSEGRKVIVD-SQASLVVVRAFPNEISAVEQFLDKAQLSLNKQVIIEAKILEVTLNDG 263
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
Q G Q SS + + + D F V+ L+R ++
Sbjct: 264 YQAGIQWDGLASSGSTEFTPSLSATTLRNPDDIDGIFSLAFTGSDFTGVIQLLKRQGKVQ 323
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----------GATSVTTHDYGVVLHFT 319
L+ P ++ ++ Q A G + T S+ ++T G+ L T
Sbjct: 324 VLSSPRISTVNNQKAVIKVGTDEFFVTDVSNDTTTTTTTTSTNPEVTLTPFFSGIALDVT 383
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSYRVRKADTTVELPSGGTIVL 370
P + + L + V+E V ++ +R+ D+ + +G +V+
Sbjct: 384 PQISENNDVILHVHPSVTEVVERNKVIELGDDIFNLPLAVSSIRETDSIIRARNGQVVVI 443
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
GLL+D + +P L++IPILGALFR S ++E+ I P +V
Sbjct: 444 GGLLQDKQSRTDASVPWLARIPILGALFRQSDQESTKSELVILLQPKVVD 493
>gi|57169056|ref|ZP_00368183.1| general secretory pathway protein D [Campylobacter coli RM2228]
gi|305432265|ref|ZP_07401428.1| general secretory pathway protein D [Campylobacter coli JV20]
gi|57019514|gb|EAL56205.1| general secretory pathway protein D [Campylobacter coli RM2228]
gi|304444613|gb|EFM37263.1| general secretory pathway protein D [Campylobacter coli JV20]
Length = 472
Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 106/260 (40%), Gaps = 16/260 (6%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
+ L + QV + V+I V + G S + + + G
Sbjct: 205 LQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNFNIGLNSQTSDNTNSFMQIQNGQGF 264
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
G+ +F+++++ L ++ L+ P L A++ Q A + G Y+ SS G
Sbjct: 265 VKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKESSKGT 324
Query: 305 TSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-------GDM 348
+ TT G++L+ P + G+I LRI +S+ +
Sbjct: 325 ENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIA 384
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P +K + V++ + T++L GL+ + Q + LSKIPILG+LFR+ N T
Sbjct: 385 PDTIQKKLSSVVQVENNQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNIT 444
Query: 409 EIFIAATPFLVKPVAMRDLS 428
EI TP +V + L
Sbjct: 445 EIVFIITPSIVDNTHIPSLR 464
>gi|229525096|ref|ZP_04414501.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426]
gi|229338677|gb|EEO03694.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426]
Length = 554
Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats.
Identities = 60/263 (22%), Positives = 97/263 (36%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
QV L+ I EV Q G S SS+G S + + + S S
Sbjct: 268 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSSGNPITSALPG 327
Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 328 LDAIGSLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 387
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
T SS + ++T G+ L TP + G + L + V E
Sbjct: 388 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKI 447
Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + + +P L +P LG
Sbjct: 448 ITYNSQEITLPLARSSIRESDSVIRAKDGDVVVIGGLMKTNTIERVSKVPFLGDVPGLGN 507
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN ++TE+ I P +V
Sbjct: 508 LFRNISNQTQKTELVILLKPTVV 530
>gi|197121096|ref|YP_002133047.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K]
gi|196170945|gb|ACG71918.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K]
Length = 887
Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats.
Identities = 64/310 (20%), Positives = 110/310 (35%), Gaps = 45/310 (14%)
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
D + G V T + T + A ++ ++ L+ QV ++ I
Sbjct: 577 DVLSERGSVSTDE---------RTNVLIVKDIPEALVRAEGLVRNLDTEIP-QVLIESRI 626
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------- 246
E + +Q+G Q S + + + VS G
Sbjct: 627 VEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQSPNQGTSSTPNYAVN 686
Query: 247 ----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ F+ L ALE ++T++ P + I + A+ G
Sbjct: 687 LPAAIGQGSGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATIDNKEATI--G 744
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMP 349
+S + T + + L TP V + G I L+I+ + P + P
Sbjct: 745 QGISIPFSQTSASGVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNSSLTGSNGQP 804
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
S R+A+T V + G T V+ G+ +P LSKIP+LG FR+ + TE
Sbjct: 805 SISKREAETEVLVKDGETTVIGGIYTRSTASKTASVPFLSKIPLLGFFFRSDTNTDDHTE 864
Query: 410 IFIAATPFLV 419
+ I TP ++
Sbjct: 865 LLIFITPRIL 874
>gi|152988863|ref|YP_001351096.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa
PA7]
gi|150964021|gb|ABR86046.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa
PA7]
Length = 714
Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats.
Identities = 42/269 (15%), Positives = 91/269 (33%), Gaps = 35/269 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
++++ L+I QV ++ I E K +G + + G
Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWNAYGKDGNMGIKDEEG 496
Query: 237 ---------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
+ + D + L A+E+
Sbjct: 497 LNCGPIAGNCSFPTVGTNKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+++P + ++A G + Y+ SSS ++ + + + L TP + RI
Sbjct: 557 EIISQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ ++ P +P + + + + G TIV+ G+ ++ + + +P L
Sbjct: 616 VEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQTKAVDKVPFLG 675
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
+P LG LFR + E+ + P +
Sbjct: 676 DLPYLGRLFRRDTVVDRKNELLVFLAPRI 704
>gi|157415698|ref|YP_001482954.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni 81116]
gi|157386662|gb|ABV52977.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni 81116]
gi|307748339|gb|ADN91609.1| General secretory pathway protein D [Campylobacter jejuni subsp.
jejuni M1]
gi|315930985|gb|EFV09960.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni 327]
Length = 470
Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats.
Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S K + L + QV + V+I V + G +
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIGLNSQVNNE 250
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
F +F + G G+ +F+++++ L + L+ P L A++ Q A + G
Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309
Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
Y+ SS G + TT G++L+ P + G+I LRI +S+
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369
Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ P +K + V++ + T++L GL+ D K I LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+LF+ N + TEI TP +V V L
Sbjct: 430 SLFKGEVLNSKVTEIVFIITPSIVDSVNAPSL 461
>gi|206575908|ref|YP_002236236.1| protein transporter HofQ [Klebsiella pneumoniae 342]
gi|206564966|gb|ACI06742.1| protein transporter HofQ [Klebsiella pneumoniae 342]
Length = 413
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 5/230 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---FVSEGGDFSVKGVL 251
QV L I + L+++G + + + P + G +
Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAETGGSPGSGQITTLSSDMSVNDASTRAGFNIGKI 240
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ E L ALER + +A P L A Q AS G + Y+ S +GATSV +
Sbjct: 241 NGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 300
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ + TPTVL GR+ L+++ + P V+ + G+ + ++ +T VE+ SG T+
Sbjct: 301 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETLA 360
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++
Sbjct: 361 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410
>gi|327480391|gb|AEA83701.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166]
Length = 644
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 87/466 (18%), Positives = 160/466 (34%), Gaps = 58/466 (12%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI-----ILQ 61
T + + P L + ANA +I+ I + + + L++ +L
Sbjct: 142 TSAAELIPLIRPLVPQYGHLAAVSSANALIISDRSANIARIQDLVRQLDRAESNDYGVLN 201
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
+ V + K+ +I + + +A
Sbjct: 202 LQHGWA--------VDIAEVLRNSLVRGEAKSTAGVQIIADSRTNRLIFIGPSEARSKLA 253
Query: 122 HLEMTL-------------RRFIADSNIRVEMVSD-TVVLH---GMVRTIQDSQRAVELS 164
L TL R D+ E + D + L G T Q + +
Sbjct: 254 ALAQTLDTPTTRSANTRVIRLRHNDAKSLAETLGDISEGLKSPEGGEATTSRPQNILIRA 313
Query: 165 ETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
+ L+ + + ++ L+I QV ++ I EV DI +G Q +I
Sbjct: 314 DESLNALVLLADPELIGTMESIVRQLDIP-RAQVMVEAAIVEVSGDITDALGVQWAIDAR 372
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKG--------------VLDRFSFETVLHALERATA 268
+ +FG +S G + + SF ++ AL +
Sbjct: 373 G-STGGAGGVNFGNTGISVGSVLNAINKNEIPNNLPDGAIIGVGTRSFGALITALSSNSK 431
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPT 321
L+ P+L + Q A G ++T S + T++ D GV L TP
Sbjct: 432 SNLLSTPSLLTLDNQEAEILVGQNVPFQTGSYTTDAAGANNPFTTIERQDIGVTLKVTPH 491
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDI 378
+ + L+I+ E+S + R +T+ G IVL GL++DD+
Sbjct: 492 INEGATLRLQIEQEISSIAPSASLTAQAVDLVTNKRAIKSTILAEDGQVIVLGGLIQDDV 551
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
+ +PLL IP+LG LFR+++ + + + P +++ A
Sbjct: 552 TRTNSKVPLLGDIPLLGGLFRSTQETHIKRNLMVFLRPTVIRDRAG 597
>gi|308094739|ref|ZP_05891643.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034]
gi|308095427|ref|ZP_05905786.2| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466]
gi|308125606|ref|ZP_05776206.2| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030]
gi|308126551|ref|ZP_05910862.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037]
gi|308087223|gb|EFO36918.1| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466]
gi|308093091|gb|EFO42786.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034]
gi|308109580|gb|EFO47120.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037]
gi|308111201|gb|EFO48741.1| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030]
Length = 530
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 63/304 (20%), Positives = 111/304 (36%), Gaps = 30/304 (9%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
+L V + S + + T + + ++V L + + QV L+ I
Sbjct: 203 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 262
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256
EV Q G S +S G S S + + + +F
Sbjct: 263 LEVTLSDGYQQGINWSNLSASIGNSGSIIVNRPASALPPLDAIGTLLGGQTNVTISDGNF 322
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
E VL+ + + L+ P +TA + Q + G + T SS
Sbjct: 323 EAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQYFVTELSSNAGNGENSNAVPEVE 382
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
+T G+ L TP + + G + L + V E V ++ +R+
Sbjct: 383 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSIRE 442
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+D+ + G +V+ GL+K + +P L +P LG LFRN+ ++TE+ I
Sbjct: 443 SDSVIRAKDGDVVVIGGLMKQQNVEQVSKVPFLGDVPALGHLFRNTSNVTQKTELVILLK 502
Query: 416 PFLV 419
P +V
Sbjct: 503 PTVV 506
>gi|82778251|ref|YP_404600.1| putative type II secretion protein [Shigella dysenteriae Sd197]
gi|81242399|gb|ABB63109.1| putative type II secretion protein [Shigella dysenteriae Sd197]
Length = 611
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 241 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 299
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 300 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 359
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 360 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 419
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 420 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 479
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 480 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 537
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 538 KRNLMVFIRPTILRDGMAAD 557
>gi|115350108|ref|YP_771947.1| general secretion pathway protein D [Burkholderia ambifaria AMMD]
gi|115280096|gb|ABI85613.1| general secretion pathway protein D [Burkholderia ambifaria AMMD]
Length = 777
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 55/294 (18%), Positives = 102/294 (34%), Gaps = 35/294 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ I E+ +G Q +
Sbjct: 377 IQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQV 435
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER-------------- 265
+ A G + + + G L L +
Sbjct: 436 ASGQFLGGTNLAPTAGTGLGNSIVNLTSGGTAATTGLAANLAGLSQGLNIGWLHNMFGVQ 495
Query: 266 -----------ATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATS 306
+ L+ P L + + A G + ++S +
Sbjct: 496 GLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNT 555
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365
D G+ LH P + G + L++ TE S NA P++ R +T+ +G
Sbjct: 556 YDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNG 615
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 616 EIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 669
>gi|325295622|ref|YP_004282136.1| type II and III secretion system protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325066070|gb|ADY74077.1| type II and III secretion system protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 506
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 63/275 (22%), Positives = 112/275 (40%), Gaps = 28/275 (10%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKS 229
K+ ++ +N + QV ++ I EV+ D ++G + G
Sbjct: 228 TAKPETLKKVKEFIDTINGISDRQVLIEAKIVEVKLDKRNELGINWKYLTFSNFLGSGGE 287
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ EG F + V +F +L L + + L+ P + A++GQ A
Sbjct: 288 YNTISFNSGAPEGKPFQLSIVKVNNTFSGLLGILSQFGKVNVLSSPRILAMNGQPAMIKV 347
Query: 290 GGQHLYKTVSSSTGATSVTTHDY----------------GVVLHFTPTVLSPGRIGLRIQ 333
G +L + +T TS ++ GVVL P + G I L I
Sbjct: 348 GRDYLAIYRTQTTSTTSTSSQTATTLTTEEVTTNSILTEGVVLTIIPKIDDKGNIILNIS 407
Query: 334 TEVSEPVIGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
+S + G + S +R+ +T V + +G T++L GL+ + KE
Sbjct: 408 PAISSLDSPLITGSTGETTDFINKVYSVNIRQLNTVVRVKNGQTVILGGLIAKSKSKEKE 467
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
G+P+L IP+LG F+++ +TE+ I TP++
Sbjct: 468 GVPILQDIPLLGNAFKSTSTISSKTELVIMLTPYV 502
>gi|258592161|emb|CBE68468.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
Length = 764
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 67/287 (23%), Positives = 110/287 (38%), Gaps = 40/287 (13%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---------- 221
A + + ++I QV ++ I E R + +G Q TG
Sbjct: 476 KDLPEAVERMEAFLKQIDIPTP-QVLIEARIVEATRKFSQSLGIQWGGTGIPTKSGSGTG 534
Query: 222 ----SSSGPSKSFAADFGGKFVSEGG---------------------DFSVKGVLDRFSF 256
+ S F + G + GG ++ + +RF
Sbjct: 535 ATVFGGTTNSLQFPTNSGLPTTTGGGIPFGSVPLALNLPATSPHLAIGMTIGSLANRFLV 594
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
L E IRTL+ P + + A G Q Y ++G T V D + L
Sbjct: 595 GAQLSVAENQGKIRTLSSPRVATQDNEEAEIKQGTQVPYT-TIDASGRTVVQFQDAFIKL 653
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
P + GR+ ++++ E S P VN G + RKA T + + +G T+V+ GLL
Sbjct: 654 KVKPHITPDGRVAMKVEAERSFPGQQVNFSGGFVFPINTRKATTNIMVQNGSTVVIGGLL 713
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIFIAATPFLVK 420
+ + + +P+L IPILG LF+ E E+ I TP +++
Sbjct: 714 QSSETIISDQVPVLGDIPILGWLFKRRAIGPDERVELLIFLTPSVLQ 760
>gi|167838164|ref|ZP_02465023.1| type II/III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 572
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 75/432 (17%), Positives = 139/432 (32%), Gaps = 39/432 (9%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
P ANA + E G + IS+ L + + V
Sbjct: 145 APRPDTEVTAANANAGAKTEAAAESGDDRAISLNLQQASLAAVFDAFAR-FTGLNIVVSE 203
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V ++ L A L+ G ++ +A L R+ +
Sbjct: 204 RVRGMVSLRLNNVPWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 260
Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
+ + V + L Q ++ + + NLL +
Sbjct: 261 RAAQLEPLASRSFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 320
Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
QV ++ I E R + +G + I +G
Sbjct: 321 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRATGIVAGRNGTL 380
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
A G F + ++ + L LE + ++ P + A
Sbjct: 381 ADLTARPIGGFDAATAGLTLFAARASRLLDVELSVLEAQGRGQIVSSPRVVTADRTKAIV 440
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
G + Y+ G + V + L P + GR+ L + ++++ +G
Sbjct: 441 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DIAKDSVGEETAS 497
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ +
Sbjct: 498 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 557
Query: 408 TEIFIAATPFLV 419
+E+ + TP +V
Sbjct: 558 SELVVYITPTVV 569
>gi|146282151|ref|YP_001172304.1| general secretion pathway protein D [Pseudomonas stutzeri A1501]
gi|145570356|gb|ABP79462.1| general secretion pathway protein D [Pseudomonas stutzeri A1501]
Length = 644
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 87/466 (18%), Positives = 160/466 (34%), Gaps = 58/466 (12%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI-----ILQ 61
T + + P L + ANA +I+ I + + + L++ +L
Sbjct: 142 TSAAELIPLIRPLVPQYGHLAAVSSANALIISDRSANIARIQDLVRQLDRAESNDYGVLN 201
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
+ V + K+ +I + + +A
Sbjct: 202 LQHGWA--------VDIAEVLRNSLVRGEAKSTAGVQIIADSRTNRLIFIGPSEARSKLA 253
Query: 122 HLEMTL-------------RRFIADSNIRVEMVSD-TVVLH---GMVRTIQDSQRAVELS 164
L TL R D+ E + D + L G T Q + +
Sbjct: 254 ALAQTLDTPTTRSANTRVIRLRHNDAKSLAETLGDISEGLKSPEGGEATTSRPQNILIRA 313
Query: 165 ETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
+ L+ + + ++ L+I QV ++ I EV DI +G Q +I
Sbjct: 314 DESLNALVLLADPELIGTMESIVRQLDIP-RAQVMVEAAIVEVSGDITDALGVQWAIDAR 372
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKG--------------VLDRFSFETVLHALERATA 268
+ +FG +S G + + SF ++ AL +
Sbjct: 373 G-STGGAGGVNFGNTGISVGSVLNAINENEIPNNLPDGAIIGVGTRSFGALITALSSNSK 431
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPT 321
L+ P+L + Q A G ++T S + T++ D GV L TP
Sbjct: 432 SNLLSTPSLLTLDNQEAEILVGQNVPFQTGSYTTDAAGANNPFTTIERQDIGVTLKVTPH 491
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDI 378
+ + L+I+ E+S + R +T+ G IVL GL++DD+
Sbjct: 492 INEGATLRLQIEQEISSIAPSASLTAQAVDLVTNKRAIKSTILAEDGQVIVLGGLIQDDV 551
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
+ +PLL IP+LG LFR+++ + + + P +++ A
Sbjct: 552 TRTNSKVPLLGDIPLLGGLFRSTQETHIKRNLMVFLRPTVIRDRAG 597
>gi|260424842|ref|ZP_05733440.2| bacterial type II and III secretion system protein [Dialister
invisus DSM 15470]
gi|260403342|gb|EEW96889.1| bacterial type II and III secretion system protein [Dialister
invisus DSM 15470]
Length = 449
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 73/392 (18%), Positives = 135/392 (34%), Gaps = 75/392 (19%)
Query: 77 ADVVVHSPRTMY--------LFGKNVGQANVIL----IGHDGKQMLNLDILIERDIAHLE 124
AD+ +P+ L + G +++ + + G+ + + + +
Sbjct: 84 ADLDHVTPKEALHAMLVSQGLIAREEGSTLIVVGESAMKNGGRATKSYKL-SYAEAKEVA 142
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
LR+ ++ ++ V+L G +E+ ET V
Sbjct: 143 EGLRQLSDSVHVAYNQTANAVILSGTP---------LEIMETAA---------------V 178
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------------------ 226
+ L++ E QV ++ + V R K++G +
Sbjct: 179 LRSLDVP-EKQVKVEAEVIAVNRSHSKELGIDWDFKALTGSGEYRRESWNEQRYVTDDAG 237
Query: 227 ----------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
+ + SV G F L+AL R
Sbjct: 238 NIKYDKNGNPRMRNIEHNGWNVKIPEGYAGISYGRSVAGHPYTAFFRANLNALVSTGKAR 297
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328
LA P + ++G+ A G + G T+ D G+ L +TP + + G I
Sbjct: 298 ILARPNVVTMNGREAEILIGNKIPVIVEHVDNGVRTTTTEYRDAGIKLTYTPRISADGEI 357
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ EVS P + V R+A+T V L SG + + GL+ + + +P+L
Sbjct: 358 TANVNAEVSTPYL-VPEMRAYRIITRQANTLVRLRSGDMLTIGGLIDKEENKTFRKVPIL 416
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+LG LF++ + EE+EI I ++
Sbjct: 417 GDIPLLGKLFQSKSRSVEESEIVIIIKAEILD 448
>gi|86151899|ref|ZP_01070112.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni 260.94]
gi|148925643|ref|ZP_01809331.1| putative type II protein secretion system D protein [Campylobacter
jejuni subsp. jejuni CG8486]
gi|315124908|ref|YP_004066912.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85841007|gb|EAQ58256.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni 260.94]
gi|145845653|gb|EDK22744.1| putative type II protein secretion system D protein [Campylobacter
jejuni subsp. jejuni CG8486]
gi|315018630|gb|ADT66723.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 470
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S K + L + QV + V+I V + G +
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQVNNE 250
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
F +F + G G+ +F+++++ L + L+ P L A++ Q A + G
Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309
Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
Y+ SS G + TT G++L+ P + G+I LRI +S+
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369
Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ P +K + V++ + T++L GL+ D K I LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+LF+ N + TEI TP +V V L
Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461
>gi|222053997|ref|YP_002536359.1| general secretion pathway protein D [Geobacter sp. FRC-32]
gi|221563286|gb|ACM19258.1| general secretion pathway protein D [Geobacter sp. FRC-32]
Length = 637
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 65/256 (25%), Positives = 106/256 (41%), Gaps = 19/256 (7%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------DFGG 236
+V+ L+ QV ++ IAEV D +++G Q + G +S + + A FG
Sbjct: 345 QVIQKLD-RRNRQVFVQAMIAEVSIDRARELGVQWGVIGGASNGTVATAGIYDPFGTFGA 403
Query: 237 ------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
G S + +F +L AL+ A+ L+ P + + A G
Sbjct: 404 LAPIIKSLGEAGIGTSSLNLAGAATFPAILKALQSNGALNVLSTPNIMTSDNKEAEIFVG 463
Query: 291 GQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
+ T S+ + D G+ L P V + L I E+S +N G
Sbjct: 464 ENVPFLTQSNLSSTGLAQQGIERKDTGITLKIKPMVSEGEYVKLDIYQEISAVKDALNKG 523
Query: 347 DMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
R A T+V + T+V+ GL++D Q+ IP L IP+LG LF+
Sbjct: 524 AAVDITTTKRSAKTSVVVKDTDTVVIGGLIQDQDQETINKIPFLGDIPLLGYLFKTKSMK 583
Query: 405 REETEIFIAATPFLVK 420
R +T + I TP+++K
Sbjct: 584 RTKTNLMIILTPYIIK 599
>gi|86153104|ref|ZP_01071309.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|121613593|ref|YP_001001123.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni 81-176]
gi|167006016|ref|ZP_02271774.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni 81-176]
gi|85843989|gb|EAQ61199.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87249586|gb|EAQ72545.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni 81-176]
gi|315058928|gb|ADT73257.1| Type II secretion outermembrane pore forming protein (PulD)
[Campylobacter jejuni subsp. jejuni S3]
Length = 470
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S K + L + QV + V+I V + G +
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQVNNE 250
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
F +F + G G+ +F+++++ L + L+ P L A++ Q A + G
Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309
Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
Y+ SS G + TT G++L+ P + G+I LRI +S+
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369
Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ P +K + V++ + T++L GL+ D K I LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+LF+ N + TEI TP +V V L
Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461
>gi|134294486|ref|YP_001118221.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4]
gi|134137643|gb|ABO53386.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4]
Length = 550
Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 57/308 (18%), Positives = 110/308 (35%), Gaps = 34/308 (11%)
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
+ L Q ++ +++ MNLL + QV
Sbjct: 226 RAADVQRLLAGATGQRLLSRRGAAAADPRMNLLFVTDLAPRIAQIAELIDAIDRASRQVR 285
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGGD 244
++ I E + + +G + ++ + A G F +
Sbjct: 286 IEARIVEGEQGFSRNLGARVALRAHGRAPAADGAAAATDTRNALDLTARAIGGFDAATAG 345
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
F++ + L ALE + ++ P + A G + Y+ G
Sbjct: 346 FTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSEVPYQ-AKVGNGV 404
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P + GR+ L + +V++ IG P+ + T VE+
Sbjct: 405 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVED 462
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
GGT+ + G+ + + +PLL +IP+LGALFR+ + + E+ + TP +V
Sbjct: 463 GGTVAIGGIYEQLRRDDVTHVPLLGRIPVLGALFRHRARSDQRNELVVFITPTVVGARCD 522
Query: 425 RDLSRPDD 432
++ D
Sbjct: 523 PAVTSDAD 530
>gi|288933223|ref|YP_003437282.1| type IV pilus secretin PilQ [Klebsiella variicola At-22]
gi|288887952|gb|ADC56270.1| type IV pilus secretin PilQ [Klebsiella variicola At-22]
Length = 412
Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 5/230 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---FVSEGGDFSVKGVL 251
QV L I + L+++G + + + P + G +
Sbjct: 180 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNIGKI 239
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ E L ALER + +A P L A Q AS G + Y+ S +GATSV +
Sbjct: 240 NGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 299
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ + TPTVL GR+ L+++ + P V+ + G+ + ++ +T VE+ SG T+
Sbjct: 300 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETLA 359
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++
Sbjct: 360 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 409
>gi|17223826|gb|AAL10693.1| hypothetical type II secretion protein [Escherichia coli ETEC
H10407]
Length = 616
Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 246 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562
>gi|121593092|ref|YP_984988.1| general secretion pathway protein D [Acidovorax sp. JS42]
gi|120605172|gb|ABM40912.1| general secretion pathway protein D [Acidovorax sp. JS42]
Length = 781
Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats.
Identities = 53/270 (19%), Positives = 101/270 (37%), Gaps = 34/270 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
QV ++ I EV + + G Q + G + + D ++
Sbjct: 431 GRRAQVLIESLIVEVSASKVAEFGIQWQGVLGNYGSTLGVLGNNSSVAGRNILDLALAAA 490
Query: 251 LDRFS------------------------FETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ + + LE L+ P L + + A
Sbjct: 491 TGNVTSIANAKPAAGMNLAVAPRINGKYYLGALANFLENTGDANVLSTPNLLTLDNEEAQ 550
Query: 287 FTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
G + T S + T+V D G++L P + G + L + EVS
Sbjct: 551 IIIGNNVPFVTGSYANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTVKLTMYQEVS 610
Query: 338 EPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ + + PS R ++TV + G IV+ GLL+D+ ++ +P++ +P++G
Sbjct: 611 KVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALGQDKVPVMGDLPVVGG 670
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426
LFRN + R++T + + P +++ A D
Sbjct: 671 LFRNEKRTRQKTNLMVFLRPMVIRDSATSD 700
>gi|153952576|ref|YP_001398775.1| general secretory pathway protein D [Campylobacter jejuni subsp.
doylei 269.97]
gi|152940022|gb|ABS44763.1| general secretory pathway protein D [Campylobacter jejuni subsp.
doylei 269.97]
Length = 470
Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats.
Identities = 66/272 (24%), Positives = 107/272 (39%), Gaps = 17/272 (6%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S K + L + QV + V+I V G +
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLSESHSSGINWQNFDIGLNSQANNE 250
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
F +F + G G+ +F+++++ L + L+ P L A++ Q A + G
Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309
Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
Y+ SS G + TT G++L+ P + G+I LRI +S+
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369
Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ P +K + V++ + T++L GL+ D K I LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+LF+ N + TEI TP +V V L
Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461
>gi|262192447|ref|ZP_06050599.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93]
gi|262031711|gb|EEY50297.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93]
Length = 707
Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats.
Identities = 64/314 (20%), Positives = 117/314 (37%), Gaps = 29/314 (9%)
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHG----------MVRTIQDSQRAVELSETFLSQSGR 173
+ + +I ++ L G +++ + +
Sbjct: 378 KSKASQDTPKQDIIAAAKQESTSLPGNTGYQPRTSNSSQSMSVVSANYRVVIDTKRNALI 437
Query: 174 NQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
Q + ++++ LL QV L+ T+AEV+ + +G + +
Sbjct: 438 FQGQYADYQRLIELLKFVDQRPRQVLLQATVAEVKVEDGFTLGTEF-------NITSGDI 490
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
++ G+ ++ GV A + + L+ P + A+ + A + G
Sbjct: 491 TGGSNGLIANAGNLNLNGVFG--DVTAKFTAALDSGKAQVLSSPRVIAMDQEPARISIGE 548
Query: 292 QHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
Q KT S G + D G+ L TPT+ G + L I EVS GV
Sbjct: 549 QIQVKTGEVSGGGDDSKATVTYQYVDVGITLDITPTINQNGLVELSISQEVS--SQGVIT 606
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
GD R T + SG TI + GL+ D + +P+L IP++G LF+ +
Sbjct: 607 GDSIPINKRSLQTRMLADSGDTIYMGGLISKDNNNSENKVPILGDIPLIGNLFKYRVEKQ 666
Query: 406 EETEIFIAATPFLV 419
TE+ + TP+++
Sbjct: 667 NSTELVLLITPYVI 680
>gi|148269971|ref|YP_001244431.1| type II and III secretion system protein [Thermotoga petrophila
RKU-1]
gi|147735515|gb|ABQ46855.1| type II and III secretion system protein [Thermotoga petrophila
RKU-1]
Length = 1282
Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats.
Identities = 66/345 (19%), Positives = 135/345 (39%), Gaps = 35/345 (10%)
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIR 137
V + S YLF G V ++ + + + + ++ + +
Sbjct: 971 VDLISQNYGYLFDNKSG---VYVLSKPKQDLARRYVYDVPHNFDQIKALIE--FYGGTVY 1025
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
V+ +++ +V+ G+ TI ++ L Q+
Sbjct: 1026 VDSLNNFMVVTGISETI-----------------------KKELDNIIEKLK-KPTKQIE 1061
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSF 256
+ I V R ++ ++ + + + + + V++ DF + G + +
Sbjct: 1062 ISAKI--VDRSLIDRLSKEAGLELTGGNVNVGSSGAGISFSVTDYLDFEKIFGGILNSNL 1119
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
+ T LA P + SG+ A G + Y T ++ G V + G+ L
Sbjct: 1120 SLQFSDQKTNTLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIEL 1179
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
+ TP V S I L + + SEP +N ++P R R+ T + + +G TI + GL+++
Sbjct: 1180 NITPFVRSDDTIELDLFVKASEPGNYIN--EVPGERTRETQTHLIVKNGSTITIGGLIRE 1237
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ +P L +P++G FR N+E+ ++ I T +V+P
Sbjct: 1238 VTNVTESKLPFLGDLPVIGQFFRTKSENKEKRDLIIFLTVRVVEP 1282
>gi|47155035|emb|CAE85234.1| GspD, hypothetical type II secretion protein [Escherichia coli]
Length = 616
Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 246 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562
>gi|320181011|gb|EFW55932.1| General secretion pathway protein D [Shigella boydii ATCC 9905]
Length = 686
Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats.
Identities = 58/318 (18%), Positives = 112/318 (35%), Gaps = 44/318 (13%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 318 TVGSGREIVSISASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAEGS 376
Query: 210 LKQIGFQHSITGS--------------------------------SSGPSKSFAADFGGK 237
G Q + + S + + D G
Sbjct: 377 NINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTNGD 436
Query: 238 FVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
+ S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 437 LSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDV 496
Query: 294 L-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
++S +V G++L TP + + + I+ EVS+ + +
Sbjct: 497 PVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV 556
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
+ RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E+
Sbjct: 557 --FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKR 614
Query: 409 EIFIAATPFLVKPVAMRD 426
+ + P +++ D
Sbjct: 615 NLMVFIRPTILRDGMAAD 632
>gi|145298152|ref|YP_001140993.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142850924|gb|ABO89245.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 693
Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats.
Identities = 56/255 (21%), Positives = 98/255 (38%), Gaps = 30/255 (11%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--------------------- 232
QV ++ + + + +G + +T + + + +
Sbjct: 436 KQVVIEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGSIEGNDGSGNNNGGSAITRPGV 495
Query: 233 ------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ + F V + D + L ALE+ + +A P +T + + A
Sbjct: 496 EDRMNVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEIIASPRVTTANQKPAL 555
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
G + Y SS+GATSVT + L TP + R+ L + +
Sbjct: 556 IEQGTEIPYVES-SSSGATSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTG 614
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
GD S + T V + +G T+VL G+ + I+ +PLL IP LG LFR +
Sbjct: 615 TGDAVSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSE 674
Query: 405 REETEIFIAATPFLV 419
++ E+ I TP +V
Sbjct: 675 NKKRELLIFVTPKIV 689
>gi|153825669|ref|ZP_01978336.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2]
gi|229520028|ref|ZP_04409457.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80]
gi|297580540|ref|ZP_06942466.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385]
gi|149740699|gb|EDM54806.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2]
gi|229342977|gb|EEO07966.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80]
gi|297534956|gb|EFH73791.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385]
Length = 559
Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats.
Identities = 61/263 (23%), Positives = 98/263 (37%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
QV L+ I EV Q G S SS+G S + + + S SV
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSSGNPITSVLPG 332
Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
T SS + ++T G+ L TP + G + L + V E
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452
Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535
>gi|307131207|ref|YP_003883223.1| type III secretion outermembrane pore forming protein
(YscC,MxiD,HrcC, InvG) [Dickeya dadantii 3937]
gi|306528736|gb|ADM98666.1| Type III secretion outermembrane pore forming protein
(YscC,MxiD,HrcC, InvG) [Dickeya dadantii 3937]
Length = 689
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 67/449 (14%), Positives = 138/449 (30%), Gaps = 38/449 (8%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99
G + +++ N + D + V++ A V + + + + G A +
Sbjct: 158 TGPAEYVNLIRNFSQQRETKEDRRKVMIFPLRYASVSDRTIQYRDQRLVI----PGVATI 213
Query: 100 I--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL-------HGM 150
+ L+ + M + ++ +L G
Sbjct: 214 LNELMDGNRNTPAGASAAASGMGNDGAMAAASGGGQDASQAIELNARAMLARLATRSSGG 273
Query: 151 VRTIQDSQRAV--ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVR 206
+ + ++S + + + + L++ Q V + I +V
Sbjct: 274 ATAAARKKDQLNGKVSADVRNNALLIRDDEKRRDEYQQLIDKIDVPQNLVNIDAIILDVD 333
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
R L ++ + + + FVS D F + ALE
Sbjct: 334 RTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS-----------DFKRFFADIQALEGE 382
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P++ + Q A +V G L TP V+ G
Sbjct: 383 GTASIVANPSVLTLENQPAVIDFSRTAFITAT--GERVANVQPVTAGTSLQVTPRVVGRG 440
Query: 327 RIG-LRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ +++ ++ + + N S R T + +VL G ++ +
Sbjct: 441 SLSSIQLVIDIEDGQVETNTEGTASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDKR 500
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
+PLL IP +G LF + + E TP L+ D+ +DA
Sbjct: 501 VPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSADNRRQLNDAMGRV 560
Query: 445 FNRVNK--IYGPKEASEVEGQNYKGAIGF 471
R +K ++ E++ E + + GF
Sbjct: 561 AQRNSKTDLFSVVESAMRELASGQTPAGF 589
>gi|218670938|ref|ZP_03520609.1| putative pilus assembly protein [Rhizobium etli GR56]
Length = 186
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 93/177 (52%), Positives = 121/177 (68%), Gaps = 4/177 (2%)
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
+ S G +V +YG+ L F P VLS GRI L I+T VSEPV G Y+ R A+
Sbjct: 14 TTDSDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNAT---YQRRSAE 70
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+ETE+ I ATP+
Sbjct: 71 TSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPY 130
Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G+IGFIYK
Sbjct: 131 LVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGFIYK 186
>gi|254291307|ref|ZP_04962101.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226]
gi|150422763|gb|EDN14716.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226]
Length = 559
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 61/263 (23%), Positives = 98/263 (37%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
QV L+ I EV Q G S SS+G S + + + S SV
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGAITQDSSGNPITSVLPG 332
Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
T SS + ++T G+ L TP + G + L + V E
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452
Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535
>gi|300721146|ref|YP_003710414.1| putative transport protein [Xenorhabdus nematophila ATCC 19061]
gi|297627631|emb|CBJ88152.1| putative transport protein, possibly in biosynthesis of type IV
pilin (fragment) [Xenorhabdus nematophila ATCC 19061]
Length = 325
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 6/229 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--L 251
QV + I R+ L ++G +T S + V +
Sbjct: 96 QQVQIIAHIVTSSREALHELGIHWGVTADPVNRSLGLNRLNLHQPAGSQRHRLVLNTARI 155
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
E L ALE+ + +A P LTA AS G + V T++ +
Sbjct: 156 HANLLEMELSALEQENQLDIIASPRLTASHQHPASIKQGSEIP--YVVQDKDKTTIQFKE 213
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ + TP +L G+I L ++ + P + + + ++ T V + +G T++
Sbjct: 214 AVLGMEVTPHILREGKIRLALKISQNAPGFPVSQGGNENLAIDKQEIMTQVTVRNGETLI 273
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L G+ + ++ +P LS IP+LG LF + E+ I TP L
Sbjct: 274 LGGIFQQKKVASQQKVPYLSDIPLLGTLFNQNGEQHSRRELVIFITPQL 322
>gi|170728738|ref|YP_001762764.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC
51908]
gi|169814085|gb|ACA88669.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC
51908]
Length = 562
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 61/252 (24%), Positives = 102/252 (40%), Gaps = 24/252 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADFGGKFVSEGGDFSVKGV-- 250
QV L+ I EV Q G + G + SF G +S+ ++ GV
Sbjct: 284 RQVILEAKILEVTLSDGYQQGIEWQNVLGHVGDTDISFGTSPSGSGLSDSITSAIGGVTS 343
Query: 251 --LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------ 302
+ F T+++ L+ + L+ P +TA + Q A G + T SST
Sbjct: 344 MKISGADFTTMINLLDTQGDVDVLSSPRVTATNNQKAVIKVGKDEYFVTDVSSTTVAGTT 403
Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY------- 351
+T G+ L TP + G I L I V +
Sbjct: 404 PVTSPEVELTPFFSGIALDVTPQIDGEGNILLHIHPSVINIKEQTKTIKISGSELELPLA 463
Query: 352 --RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+R++DT ++ +G +V+ GL+K + L +PLL IP++G LF N + ++TE
Sbjct: 464 QSDIRESDTVIKAKTGEVVVIGGLMKSENIDLVSKVPLLGDIPLVGELFTNRSKSLQKTE 523
Query: 410 IFIAATPFLVKP 421
+ + P +V+
Sbjct: 524 LVLLLKPTVVEA 535
>gi|240136813|ref|YP_002961280.1| putative General secretion pathway protein D [Methylobacterium
extorquens AM1]
gi|240006777|gb|ACS38003.1| putative General secretion pathway protein D [Methylobacterium
extorquens AM1]
Length = 792
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 21/291 (7%)
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIG 214
+ A+ + + S + K++ +L A QV L+ IAEV + Q G
Sbjct: 461 RRDAIGVVADEANNSLVISATRNQYDKILRILGRLDAMPMQVLLETVIAEVTLNNELQFG 520
Query: 215 FQHSITGS-----------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
Q + S + ++ + + G +L+ F VL+AL
Sbjct: 521 VQWFLKNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNAL 580
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVL 316
+ T + ++ P +T + ++A G Q S + + D GV+L
Sbjct: 581 QGVTRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVIL 640
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
TP V G + L I EVS+ V + + P+ R R+ T+V + G ++ + G+++
Sbjct: 641 SVTPRVNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAINDGHSLAIGGMVQ 700
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+ Q E +P+L +PI+G FRN R TE+ + P +++ D
Sbjct: 701 EKAQITNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEAD 751
>gi|294146464|ref|YP_003559130.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
gi|292676881|dbj|BAI98398.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
Length = 385
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 95/402 (23%), Positives = 142/402 (35%), Gaps = 79/402 (19%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ + ++ + + L P + V V + S R++ L G A
Sbjct: 10 LATVAQTALQVKEQRTLSYPRAIGRVEVDREGVLSIAAPSARSLRLTAIGEGAAT----- 64
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ V ++ V D+ + +
Sbjct: 65 --------------------------------VSVYGGDGGLMAREPVSVAPDAAASAPI 92
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
GE V + V A V LK +GF S
Sbjct: 93 VRA-------------------------GEQVVAVDVQFAAVSATTLKALGFNFSKLSGD 127
Query: 224 SGPSKSFAADFGGKFVSEGG-----------DFSVKGVLDRFSFETVLHALERATAIRTL 272
+ + G + G F++ VL AL + L
Sbjct: 128 IQGAIVSPSSLGSASFNPDGLALEASAPIQNAFNLFLSAPNRGIGAVLSALSSNGLSQLL 187
Query: 273 AEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
A+PTL SG+ ASF +GG+ VS S S+ ++GV L TP VLS I L
Sbjct: 188 AQPTLLVRSGEQASFLAGGEFPVPVPQVSGSGNTLSIQYKEFGVRLSVTPFVLSKDHIVL 247
Query: 331 RIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
+I EVSE + + +P R R A+TTVEL SG + V+AGL KE P
Sbjct: 248 KIAPEVSELDYNNGVQLQGYVVPGLRRRSAETTVELGSGQSFVIAGLSYSSQTVTKEKTP 307
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
L IP+LGA F+ + +E+ E+ I ATP LV P+ ++
Sbjct: 308 LFGDIPVLGAFFKRQQNQKEKQELIIVATPRLVGPMKPEEVP 349
>gi|18139873|gb|AAL60184.1|AF426313_4 hypothetical type II secretion protein GspD [Escherichia coli]
Length = 616
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 246 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + + P +++ D
Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562
>gi|301058098|ref|ZP_07199150.1| general secretion pathway protein D [delta proteobacterium NaphS2]
gi|300447730|gb|EFK11443.1| general secretion pathway protein D [delta proteobacterium NaphS2]
Length = 749
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 65/338 (19%), Positives = 133/338 (39%), Gaps = 25/338 (7%)
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-T 153
G+A+ + G+ + + E++ A ++ A + L G V T
Sbjct: 404 GEASTQVQGNPFSKAKVAEKKAEKEAAKAGEPTKKRAAGEKGAAASGEGSTTLMGEVTIT 463
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ + A+ + ++++ ++I QV ++ TIAEV D Q
Sbjct: 464 PDEIRNALII--------EATPSDYKIIEEMLKKIDI-MPRQVLIQATIAEVTLDSSTQF 514
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G ++++ ++ + +F A G + + + L AL + ++
Sbjct: 515 GVEYALGHGAAVGNAAFMATLGSGGLQYSVGVT-------NKWYAELTALATKGKLNVIS 567
Query: 274 EPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
P + A Q A + + ++ T++ D GV+L TP + G
Sbjct: 568 SPHVLASDNQEAKIDVSREIPLASGTTNVSSGTTISETTIEYRDTGVILSVTPHINERGL 627
Query: 328 IGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+ + + EVS E V + P++ R TT+ + G TI + GL++D + G+
Sbjct: 628 VTMDVDEEVSNYEGNQPVAGNEYPTFSKRVVKTTLTVGHGQTIAIGGLIRDRENEETRGL 687
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
P L +P++ L + E+ E+ + TP +V +
Sbjct: 688 PCLVDVPVVKYLTGSWNKETEKIELIVLITPRVVANMD 725
>gi|332524328|ref|ZP_08400549.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2]
gi|332107658|gb|EGJ08882.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2]
Length = 719
Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats.
Identities = 53/269 (19%), Positives = 97/269 (36%), Gaps = 41/269 (15%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------------------- 225
QV ++ I E + +G + +
Sbjct: 452 RQVMIEARIVEADDTFGRALGVKLGANAAPKFYNNGGVGVGVGGNYDDVGYQTGQLLKDP 511
Query: 226 ----------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
P+ +++F G + S+ L ALE + ++ P
Sbjct: 512 GFNSTQFVNLPANISSSNFSGVTSAPTFAVSLFNSSLTRFLNLELSALEADGKGKIVSSP 571
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ + A G + Y+ +SS GATS++ + L TP + G + L +
Sbjct: 572 RVITADQEKALIEQGEELPYQESTSS-GATSISFRKASLKLEVTPQITPEGNVILD--VD 628
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
V++ +G + + + T V + +GGT+V+ G+ +PLL IP LG
Sbjct: 629 VNKDSVGRSTAAGFAIDTKHVKTKVLVENGGTVVIGGIYTQSESTDVSKVPLLGDIPGLG 688
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424
LFR++ +TE+ + TP +V A
Sbjct: 689 VLFRSTTRTSSKTELLVFLTPKIVTDRAA 717
>gi|73542913|ref|YP_297433.1| type II and III secretion system protein:NolW-like [Ralstonia
eutropha JMP134]
gi|72120326|gb|AAZ62589.1| type II and III secretion system protein:NolW-like [Ralstonia
eutropha JMP134]
Length = 804
Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats.
Identities = 66/312 (21%), Positives = 108/312 (34%), Gaps = 39/312 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
A QV ++ I EV Q+G Q + SSSG + FA G + ++ G
Sbjct: 432 ARRAQVYIESMIVEVTSTQASQLGIQWQGLLSSSSGNNNVFAGTNFGTGGQNILNLTLAG 491
Query: 250 VLDRFSFETVLHALER----------------------------ATAIRTLAEPTLTAIS 281
L + + A ++ ++ L+ P L +
Sbjct: 492 ALYNSNHSAGIVAAQQLVPDVGGLNLGVVNKALGLGALLRALGTNGSVNLLSTPNLITLE 551
Query: 282 GQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
+ A G T S + T + D G+ L P + G + ++I
Sbjct: 552 NEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVRPQITDGGLVKMQIF 611
Query: 334 TEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
E S V G P+ VR +T V + G IVL GL++D + +PLL IP
Sbjct: 612 QESSSVVPGTLTQVQGPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDGVQKVPLLGDIP 671
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD-HYSVEDDAKAFFFNRVNKI 451
+G LFR NR +T + + P++++ D D Y N + +
Sbjct: 672 WIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAADRLTQDRYDYMRAQQTDFVSPNIMVRD 731
Query: 452 YGPKEASEVEGQ 463
+
Sbjct: 732 ANTPVLPPADAP 743
>gi|326572695|gb|EGE22682.1| general secretion pathway protein D [Moraxella catarrhalis BC8]
Length = 428
Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats.
Identities = 61/283 (21%), Positives = 116/283 (40%), Gaps = 15/283 (5%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ +V +++ + +++ L++ + Q+ ++ I E+
Sbjct: 116 QMLNSLSISDSVAVADISSNAVIVRNDNAFDFAQIIKSLDV-NKKQILIQAVILELSDTD 174
Query: 210 LKQIGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-------DRFSFETVLH 261
K +G Q + G+ G A ++ SV G L + VLH
Sbjct: 175 TKNLGVQWAAGNGAGYGVVNFNPAVSLTNALAGNKSLSVLGALFGYKKNDGNKFYGAVLH 234
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLH 317
ALE + L+ P++ ++ ++AS G T S +++ D G+ L
Sbjct: 235 ALEHTSNANLLSMPSVLSLDNEAASILIGQNIPVITGSQLDRNGEPFKTISRLDVGISLK 294
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
TP + RI +++ EVS V N G + DT + +G IVL GL++D+
Sbjct: 295 VTPQITDDNRINMKVYQEVSNVVNTTNDGVV--TNKSVIDTNILSGNGEVIVLGGLMRDE 352
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+G+P LSK+P LG F+ + +++ + I P ++
Sbjct: 353 TTTTVQGVPKLSKLPFLGKAFKADLDSAKKSNLVIFLQPTIID 395
>gi|226193920|ref|ZP_03789521.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9]
gi|225933865|gb|EEH29851.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9]
Length = 566
Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats.
Identities = 72/283 (25%), Positives = 137/283 (48%), Gaps = 11/283 (3%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+
Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212
Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I G + + ++ G ++ + A ++ LAEP L
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328
Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHF 318
ISGQ A+F +GG+ SS T ++ ++GV
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGAEV 371
>gi|297581573|ref|ZP_06943496.1| general secretion pathway protein D [Vibrio cholerae RC385]
gi|297534411|gb|EFH73249.1| general secretion pathway protein D [Vibrio cholerae RC385]
Length = 674
Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats.
Identities = 57/320 (17%), Positives = 115/320 (35%), Gaps = 49/320 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
G + + V ++ + S +V+ L+I QV ++ I E
Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352
Query: 205 VRRDILKQIGFQHSITGSS---------------------------------------SG 225
+ +G Q S
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTETKAVYDTDNNFLRN 412
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ + D+ + G + + +++A+ ++ L+ P++T + A
Sbjct: 413 ETTTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGEA 472
Query: 286 SFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
SF G + T SS +V + G+ L P + + L+I+ EVS +
Sbjct: 473 SFIVGEEVPVITGSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSNVL 532
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR+
Sbjct: 533 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRS 591
Query: 401 SRFNREETEIFIAATPFLVK 420
+ E+ + + P +++
Sbjct: 592 TSSQVEKKNLMVFIKPTIIR 611
>gi|90416876|ref|ZP_01224805.1| putative general secretion pathway protein [marine gamma
proteobacterium HTCC2207]
gi|90331223|gb|EAS46467.1| putative general secretion pathway protein [marine gamma
proteobacterium HTCC2207]
Length = 629
Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats.
Identities = 52/302 (17%), Positives = 115/302 (38%), Gaps = 30/302 (9%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAE 204
L G + ++ A ++ L+ + + +++ N++ QV ++ IAE
Sbjct: 286 LAGEAVADKKAKAAYQIQIDELNNALVVAAPTAVIREIKNVVAQLDRSRPQVLIEAVIAE 345
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF------------------- 245
+ D +++ Q + + + G + G
Sbjct: 346 LSEDQAQELSSQLAYSSKNRGGYLTNFDGLLATLTGLGISGVEPTAAELGLLPKKVMAVA 405
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------ 299
++ AL+ + + L+ P++ + + A+ + G + ++T S
Sbjct: 406 GDFDSETGKGIGLLIQALKTDGSTKILSTPSVVTLDNEEATLSVGEEVPFQTGSFTSSNN 465
Query: 300 -SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
S+ T++ + GV L P + + L I+ E S+ GV + T
Sbjct: 466 GSNNPFTTINREEVGVKLKVKPQISKGDSVRLEIEQESSKVKSGVPGLQ--TTSKSTMQT 523
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V + G ++L GL++D +PLL IP+LG LFR++ ++ + + P +
Sbjct: 524 NVLIQDGELLILGGLIEDQTGGSATKVPLLGDIPLLGRLFRSTSKADSQSVLMMFIRPTI 583
Query: 419 VK 420
++
Sbjct: 584 IR 585
>gi|317407154|gb|EFV87149.1| general secretion pathway protein D [Achromobacter xylosoxidans
C54]
Length = 870
Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats.
Identities = 58/272 (21%), Positives = 102/272 (37%), Gaps = 29/272 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
+V++ L+ QV ++ I EV + G Q + +
Sbjct: 416 EVIDQLDQR-RAQVLVESLIVEVSEQAAAEFGIQWMTGAGNINSGGTSFIGGTNLGGSGL 474
Query: 237 ------KFVSEGGDFSVKGVLDRF--------SFETVLHALERATAIRTLAEPTLTAISG 282
+ G S+ V + + A++ L+ P L +
Sbjct: 475 TGTGPTSIDALGSGLSLGVVKGTVDVLGNKVINLGVLARAMQNTGEANILSTPNLLTLDN 534
Query: 283 QSASFTS-------GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
QSAS GQ++ +++ ++ D G+ L+ P + G + L I E
Sbjct: 535 QSASILVGKTVPFVTGQYVTNGGNNNNPFQTIQREDVGLKLNIRPQISEGGAVKLDIYQE 594
Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
VS +A R DT+V + G IVL GLL+D++ +P LS IP+L
Sbjct: 595 VSSIDESRSSATTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLTSNNVPGLSSIPVL 654
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
G+LF+ R +T + + P++V+
Sbjct: 655 GSLFKYDSRKRTKTNLMVFLRPYVVRDARQSA 686
>gi|303229539|ref|ZP_07316327.1| bacterial type II and III secretion system protein [Veillonella
atypica ACS-134-V-Col7a]
gi|302515664|gb|EFL57618.1| bacterial type II and III secretion system protein [Veillonella
atypica ACS-134-V-Col7a]
Length = 399
Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats.
Identities = 75/326 (23%), Positives = 129/326 (39%), Gaps = 36/326 (11%)
Query: 99 VILIGHDGKQMLNLDILIERDIAH---LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
V + GH G + +++E +A LE ++ + + V ++ +VL
Sbjct: 105 VTVTGHSGAKEHRHVVVVEPKMASSTSLESVIKTVVPNGKFAVHKETNQIVL-------- 156
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
++ ++ QV L+ TI + K+ GF
Sbjct: 157 ----------------NVTGDEEKGVNSIIQSVD-RDMKQVRLEATIMAMEHSYTKETGF 199
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ S D + + + G +F + L LE + +A P
Sbjct: 200 RWS-----WLSLTGHGKDKTNSYGAISFGKAPDGEAYKFFVKPELSLLETSGKAVVIATP 254
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
++ A++G++A G + S S G + + G+ L +TP V G I I+
Sbjct: 255 SIMALNGEAAHILIGERIPVIEESISNGERKRSIHYEEVGIKLDYTPVVTKNGTIDTSIR 314
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
EVS P I V+ R+A T V L G +V+ GL+ + Q+ E IP+L IP+
Sbjct: 315 AEVSSP-IMVSEMKSYKITTRQAQTRVRLQPGEVLVIGGLMDNRDQKQIEKIPILGDIPL 373
Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
LG LFR+SR ++ E+ I +V
Sbjct: 374 LGKLFRHSRKTKDSVEMVILVKATVV 399
>gi|319789878|ref|YP_004151511.1| type II and III secretion system protein [Thermovibrio ammonificans
HB-1]
gi|317114380|gb|ADU96870.1| type II and III secretion system protein [Thermovibrio ammonificans
HB-1]
Length = 663
Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats.
Identities = 50/257 (19%), Positives = 97/257 (37%), Gaps = 30/257 (11%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-------- 244
QV +K I ++ K +GF I+G + + + G +
Sbjct: 397 SKQVLVKAKIVQLSAKAEKDLGFTWFISGYNRLGDSNLSTYTAGSYGFNTAGYTPLISPD 456
Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+ E L ALE + ++ P + + Q AS
Sbjct: 457 TYANVSKIPVMDSTLALGILNKAQTLRVELALKALEVDGDAQIISSPKVLTLDNQEASIE 516
Query: 289 SGGQHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IG 342
G + Y + + + ++L P + I L I+ P +
Sbjct: 517 QGIEIPYRESTVGAGGATSYRIAFKKASLILKVKPHITKDNNILLDIEVRKDSPNYDYVA 576
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ G+ P+ R + V + +G T+V+ G+ + + + + G+P+LS+IP+LG LF+N
Sbjct: 577 ITGGNEPAINTRNVKSRVMIRNGDTVVIGGIYEKERSKSQSGVPVLSRIPLLGWLFKNQT 636
Query: 403 FNREETEIFIAATPFLV 419
++++ I TP L+
Sbjct: 637 VQVTKSKLLIFITPVLI 653
>gi|294651771|ref|ZP_06729069.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC
19194]
gi|292822328|gb|EFF81233.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC
19194]
Length = 725
Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats.
Identities = 52/296 (17%), Positives = 100/296 (33%), Gaps = 38/296 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
AV T +K+++LL+++ + QV ++ I D +++G + I
Sbjct: 424 AVADVRTNTLIVNDTAQNIDKIRKMVDLLDVSVK-QVMIEARIVRASTDFTREMGVKWGI 482
Query: 220 TGSSSGPSK----------------------------------SFAADFGGKFVSEGGDF 245
+ + D G
Sbjct: 483 LSQGVTRNNDLLVGGSDTTLWNLREPKKDSETGGWKYEIERPDNLNVDLGATTAGASRIA 542
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTG 303
L F + L A++ ++ P + Q A SG + Y T + +
Sbjct: 543 FGLISLSDFMLDLELSAVQADGYGEVISTPKVMTADKQPAKIESGTKIPYSSSTGAGANA 602
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
D + L TP++ G++ +++ P G + + DT V +
Sbjct: 603 VPKTEFIDATLSLDVTPSITPDGKVMMKLNITKDAPSNPTPTGQL-TISKNSIDTNVLVD 661
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G T+VL G+ + + + +P L +P +G LFR + E+ I TP +V
Sbjct: 662 NGETVVLGGIFEQENISSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIV 717
>gi|330828668|ref|YP_004391620.1| type IV pilus secretin PilQ [Aeromonas veronii B565]
gi|328803804|gb|AEB49003.1| Type IV pilus secretin PilQ [Aeromonas veronii B565]
Length = 741
Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats.
Identities = 65/311 (20%), Positives = 115/311 (36%), Gaps = 30/311 (9%)
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
+ +L + + AV + E ++ SS K M + QV
Sbjct: 428 AKASEVAALLSSESTKLLSPRGAVSVDERTNVLVVKDTADVISSIKRMLDILDIPVKQVV 487
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------------------------- 232
++ + + + +G + +T + + + +
Sbjct: 488 IEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGSIAGNDGSGNNNGGSTITRPTADDRL 547
Query: 233 --DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ + F V + D + L ALE+ + +A P +T + + A G
Sbjct: 548 NVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEIIASPRVTTANQKPALIEQG 607
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM 348
+ Y SS+GATSVT + L TP + R+ L + + GD
Sbjct: 608 TEIPYVES-SSSGATSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDA 666
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
S + T V + +G T+VL G+ + I+ +PLL IP LGALFR + ++
Sbjct: 667 VSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVTKVPLLGDIPGLGALFRKTTSENKKR 726
Query: 409 EIFIAATPFLV 419
E+ I TP +V
Sbjct: 727 ELLIFVTPKIV 737
>gi|71900198|ref|ZP_00682337.1| type II and III secretion system protein:NolW-like [Xylella
fastidiosa Ann-1]
gi|71730031|gb|EAO32123.1| type II and III secretion system protein:NolW-like [Xylella
fastidiosa Ann-1]
Length = 603
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 45/265 (16%), Positives = 99/265 (37%), Gaps = 29/265 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231
DQV ++ I + +G + + +S +
Sbjct: 336 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSHVTTADSSTSATRGLN 395
Query: 232 ---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
S + + +F+ + L AL++ + ++ P + + +
Sbjct: 396 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 455
Query: 289 SGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341
G + Y T V+ +V + + L TPT+ + R+ L + E+ + +
Sbjct: 456 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 515
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+
Sbjct: 516 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 575
Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426
++++ E+ I TP +++
Sbjct: 576 GKDKQKAELLIFVTPKVLRVANATA 600
>gi|307731499|ref|YP_003908723.1| general secretion pathway protein D [Burkholderia sp. CCGE1003]
gi|307586034|gb|ADN59432.1| general secretion pathway protein D [Burkholderia sp. CCGE1003]
Length = 782
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 63/346 (18%), Positives = 114/346 (32%), Gaps = 39/346 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ I E+ + +G Q +
Sbjct: 373 IQADAATNSLIITAPEPVYRNLRAVIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQV 431
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS-------------------------VKGVLDRF 254
+S + A ++ + +
Sbjct: 432 ANNSIFAGTNLATGQSNSIINLTTGAVAAGATGGLASAIATQGVQQGLNIGWIHNIFGVQ 491
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------GATS 306
+L AL + L+ P L + + A G +T S S +
Sbjct: 492 GLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNIPIQTGSYSNLTSGTASSAFNT 551
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVEL 362
D G+ LH P + G + L++ TE S V G P + R +TV
Sbjct: 552 YDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVNGTTNATTNPAGPQFTKRSIQSTVLA 611
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
+G IVL GL++D+ Q +PLL IP +G LFR+ + NR +T + + P ++
Sbjct: 612 DNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVIINDR 671
Query: 423 A-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
+ ++ Y N + K +G
Sbjct: 672 DTAQAVTSNRYDYIQGVQGSYRQDNNLMKDNDDPVVPPKPTGPSQG 717
>gi|260775597|ref|ZP_05884494.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450]
gi|260608778|gb|EEX34943.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450]
Length = 545
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 63/314 (20%), Positives = 117/314 (37%), Gaps = 37/314 (11%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
++E ++ G +++ + +A ++ R + + + QV
Sbjct: 214 QLEQAVSQLIGSGQGQSVVITPQAGVITVRAFPDEIREVRS------FIGVSQQRLHRQV 267
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------KSFAADFGGKFVSEGGDF 245
L+ I EV Q G S +S+G + + A G +
Sbjct: 268 ILEAKILEVTLSDGYQQGIDWSKAFTSNGTNYTIGQGTPTTTGTPATLPGLDTIGTLLGG 327
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302
V+ SF+ V+ + + L+ P +TA + Q A G + T S+
Sbjct: 328 QTNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDFSTNVDT 387
Query: 303 --------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGD 347
+T G+ L TP + + G + L + V E G +
Sbjct: 388 SSTTSTTSTDIELTPFFSGISLDVTPQIDNDGSVLLHVHPAVIDVTEENKEITNGTSTVS 447
Query: 348 MP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P + +R++D+ + G +V+ GL+K + +P L +P LG LFRN+
Sbjct: 448 LPLATSSIRESDSVIRAQDGDVVVIGGLMKSNTLDRTSKVPFLGDVPALGHLFRNTTQYT 507
Query: 406 EETEIFIAATPFLV 419
E+TE+ I P +V
Sbjct: 508 EKTELVILLKPTVV 521
>gi|153215373|ref|ZP_01949971.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587]
gi|124114744|gb|EAY33564.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587]
Length = 559
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 59/263 (22%), Positives = 96/263 (36%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235
QV L+ I EV Q G S SS+G S + + G
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSNGNPITSVLPG 332
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
T SS + ++T G+ L TP + G + L + V E
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452
Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535
>gi|254558682|ref|YP_003065777.1| General secretion pathway protein D [Methylobacterium extorquens
DM4]
gi|254265960|emb|CAX21710.1| putative General secretion pathway protein D [Methylobacterium
extorquens DM4]
Length = 794
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 21/291 (7%)
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIG 214
+ A+ + + S + K++ +L A QV L+ IAEV + Q G
Sbjct: 463 RRDAIGVVADEANNSLVISATRNQYDKILRILGRLDAMPTQVLLETVIAEVTLNNELQFG 522
Query: 215 FQHSITGS-----------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
Q + S + ++ + + G +L+ F VL+AL
Sbjct: 523 VQWFLKNSGSRFNLAQADTNRSVAQGTSGTDALIKAAVRGVPGFNYLLNASDFNVVLNAL 582
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVL 316
+ T + ++ P +T + ++A G Q S + + D GV+L
Sbjct: 583 QGVTRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVIL 642
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
TP V G + L I EVS+ V + + P+ R R+ T+V + G ++ + G+++
Sbjct: 643 SVTPRVNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQ 702
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+ Q E +P+L +PI+G FRN R TE+ + P +++ D
Sbjct: 703 EKAQITNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEAD 753
>gi|70730124|ref|YP_259863.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5]
gi|68344423|gb|AAY92029.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5]
Length = 794
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 59/270 (21%), Positives = 100/270 (37%), Gaps = 28/270 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241
+V++ L+ QV ++ I EV D + G Q G V
Sbjct: 460 EVIDQLDQR-RAQVVIESLIVEVSEDDASEFGVQWQAGNLGGHGGFGGVNLGGSGLVGTP 518
Query: 242 ------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G + G+ + + AL+ L+ P L + +
Sbjct: 519 ASKTSIDVLPKGLNVGVVNGTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNE 578
Query: 284 SASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+AS G + T +S+ +V + G+ L+ P + G + L I E
Sbjct: 579 AASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQE 638
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
VS + R DT++ L G +VL GLL+D Q + +P LS IP LG
Sbjct: 639 VSSVDQRASVDAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLG 698
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425
LFRN + + +T + + P++++
Sbjct: 699 VLFRNDKRSVTKTNLMVFLRPYIIRDSGAG 728
>gi|323527881|ref|YP_004230034.1| general secretion pathway protein D [Burkholderia sp. CCGE1001]
gi|323384883|gb|ADX56974.1| general secretion pathway protein D [Burkholderia sp. CCGE1001]
Length = 785
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 59/304 (19%), Positives = 107/304 (35%), Gaps = 38/304 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T ++ + + V++ L+ QV ++ I E+ + +G Q +
Sbjct: 374 IQADAATNSLIITASEPVYRNLRAVIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQV 432
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS-------------------------VKGVLDRF 254
+S + A ++ + + +
Sbjct: 433 ANNSVFAGTNLATGSSNSIINLTAAAAAAGTTGGLATALGTQGIQQGLNIGWIHNIFGVQ 492
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------GATS 306
+L AL + L+ P L + + A G +T S S +
Sbjct: 493 GLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSNLTSGNASSAFNT 552
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVEL 362
D G+ LH P + G + L++ TE S V G P + R +TV
Sbjct: 553 YDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVNGTTNAATNPAGPQFTKRSIQSTVLA 612
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
+G IVL GL++D+ Q +PLL IP +G LFR+ + NR +T + + P ++
Sbjct: 613 DNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVIISDR 672
Query: 423 AMRD 426
Sbjct: 673 DTAQ 676
>gi|332531032|ref|ZP_08406951.1| type II and III secretion system protein [Hylemonella gracilis ATCC
19624]
gi|332039513|gb|EGI75920.1| type II and III secretion system protein [Hylemonella gracilis ATCC
19624]
Length = 740
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 58/275 (21%), Positives = 99/275 (36%), Gaps = 33/275 (12%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------------TGSSSGPSKSF 230
V++ L++ QV ++ IAEV D+ G Q G++ G
Sbjct: 397 VIDQLDMR-RAQVFVESLIAEVNADVANDFGIQWQGGIPSGSSSSVVGLMGTNFGSGAGN 455
Query: 231 AADFGGKFVSE---------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ S V+ + + + LE L+ P L +
Sbjct: 456 IFNLASGISSGQPAAPGAGFTAGVGVQRGNNGVALGVLARFLETNRMGNVLSTPNLMTLD 515
Query: 282 GQSASFTSGGQHLYKTVSSS---------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ A G + T + ++ D G+ L P + G + + I
Sbjct: 516 NEEAKIVIGQNVPFVTGQYTANNSSSGAVNPFQTIERRDVGLTLAVRPQISENGTVKMVI 575
Query: 333 QTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
EVS + R DT+V + G IVL GLL+D+ +E +P L I
Sbjct: 576 SQEVSSVDPTSLTSAAGLRTSKRSIDTSVLVDDGAIIVLGGLLQDESSVSEEKVPGLGSI 635
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
P LG LFR+ +R++T + + P +V+ +
Sbjct: 636 PGLGWLFRSESGSRKKTNLMVFLRPVIVRNTQDSN 670
>gi|241664633|ref|YP_002982993.1| general secretion pathway protein D [Ralstonia pickettii 12D]
gi|240866660|gb|ACS64321.1| general secretion pathway protein D [Ralstonia pickettii 12D]
Length = 803
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 67/320 (20%), Positives = 108/320 (33%), Gaps = 42/320 (13%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------------- 225
A QV ++ I EV Q+G Q +
Sbjct: 428 ARRAQVYIESMIVEVTATKASQLGIQWMVGAGGPNTYGGGGTNFGTGSGNLLTLAGTIAT 487
Query: 226 ------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
S + V + +L AL ++ L+ P L
Sbjct: 488 ITTGGIGSTAAQTALSSVNVGQLNGGQFGVFNKASGLGALLSALGSDGSVNVLSTPNLIT 547
Query: 280 ISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+ + A G T S + T + D G+ L P + G + ++
Sbjct: 548 LDNEEAKILIGQNVPITTGSYAQTGTSASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQ 607
Query: 332 IQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
I E S V G NA P+ VR +T V G +VL GLL+D+ Q ++ +P L
Sbjct: 608 IFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGD 667
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-FFFNRVN 449
IPILGALFR+ R +T + + P +++ A + D+ Y+ D + F +
Sbjct: 668 IPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGALSDNRYNYMRDTQQGFVSPNML 726
Query: 450 KIYGPKEASEVEGQNYKGAI 469
K+ +
Sbjct: 727 PTTSDKDTPVLPTPEAMRPA 746
>gi|167620691|ref|ZP_02389322.1| type II/III secretion system protein [Burkholderia thailandensis
Bt4]
Length = 572
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 74/431 (17%), Positives = 141/431 (32%), Gaps = 39/431 (9%)
Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
P++ + A A + E + IS+ L + + V
Sbjct: 146 PALPSDTEVASAGANANAETAAESDDNRAISLNLQQASLAAVFDAFAR-FTGLNIVVSER 204
Query: 81 VHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V ++ L A L+ G ++ +A L RR +
Sbjct: 205 VRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERRRF---DAHAR 261
Query: 140 MVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------- 191
+ + V + L +Q ++ + + NLL +
Sbjct: 262 AAQLEPLASRSFVLRYARAADVQRLLSGSAAQRILSKRGSVLADPRTNLLFVTDLSGRLA 321
Query: 192 -----------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSK 228
QV ++ I E R + +G + + +G
Sbjct: 322 QIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLA 381
Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
A F + ++ + L ALE + ++ P + A
Sbjct: 382 DLTARPISGFDAATAGLTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVE 441
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
G + Y+ G + V + L P + GR+ L + +V++ +G
Sbjct: 442 QGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASG 498
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +
Sbjct: 499 PAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRS 558
Query: 409 EIFIAATPFLV 419
E+ + TP +V
Sbjct: 559 ELVVYITPTVV 569
>gi|327482460|gb|AEA85770.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166]
Length = 740
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 59/276 (21%), Positives = 111/276 (40%), Gaps = 12/276 (4%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
V + V +AEV + + +G +S G + G ++ +
Sbjct: 468 VMIDVLLAEVNINDREGLGIDWRNITASLGGKELLIGTANGL---GASGLNISALNSAGQ 524
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVT 308
+ L+A + P L SGQ A G + T ++ + T +V
Sbjct: 525 TKAALNAFYENRQAVIRSSPKLMVRSGQEARIEVGNEIPVVTGTTQSTETGNAPITQTVQ 584
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGT 367
GV+L PTV + G + L++ E+SE ++ P RK +TT+ L GG+
Sbjct: 585 YRKTGVLLSIKPTVQASGVVDLQVSQELSESTDTSTGENLTPVINNRKVETTLTLRDGGS 644
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRD 426
++LAGL+ + + G+PLL +P +G LF++ + TE+ + P++++ +
Sbjct: 645 VMLAGLISSNKGRGDTGVPLLGDLPWVGNLFKSQSASENRTELIVMIIPYIIRDFDEAQS 704
Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
L+R + A + V ++
Sbjct: 705 LTRSYQDRLPLNSAPSLERRGVYRLPAADTTPPTAP 740
>gi|309780546|ref|ZP_07675293.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA]
gi|308920701|gb|EFP66351.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA]
Length = 805
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 67/320 (20%), Positives = 108/320 (33%), Gaps = 42/320 (13%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------------- 225
A QV ++ I EV Q+G Q +
Sbjct: 430 ARRAQVYIESMIVEVTATKASQLGIQWMVGAGGPNTYGGGGTNFGTGSGNLLTLAGTIAT 489
Query: 226 ------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
S + V + +L AL ++ L+ P L
Sbjct: 490 ITTGGIGSTAAQTALSSVNVGQLNGGQFGVFNKASGLGALLSALGSDGSVNVLSTPNLIT 549
Query: 280 ISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+ + A G T S + T + D G+ L P + G + ++
Sbjct: 550 LDNEEAKILIGQNVPITTGSYAQTGTSASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQ 609
Query: 332 IQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
I E S V G NA P+ VR +T V G +VL GLL+D+ Q ++ +P L
Sbjct: 610 IFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGD 669
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-FFFNRVN 449
IPILGALFR+ R +T + + P +++ A + D+ Y+ D + F +
Sbjct: 670 IPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGALSDNRYNYMRDTQQGFVSPNML 728
Query: 450 KIYGPKEASEVEGQNYKGAI 469
K+ +
Sbjct: 729 PTTSDKDTPVLPTPEAMRPA 748
>gi|126666716|ref|ZP_01737693.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17]
gi|126628761|gb|EAZ99381.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17]
Length = 705
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 62/332 (18%), Positives = 123/332 (37%), Gaps = 40/332 (12%)
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
T ++ + +R++++ V + + + + S F+S R S + V
Sbjct: 373 ETTKQIAELAPLRLDIIQVNYAKAAEVVALVQADQELISSRGFISSDSRTN-TISVRETV 431
Query: 185 MNLLNIA--------GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG- 235
L I QV+++ I + ++ + +G + + + S
Sbjct: 432 EKLNEIRRLVSTWDVAVRQVSIEARIVRAQTNVAESLGVRWGGASYGNNGNNSTVVGGSL 491
Query: 236 ---------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
G F+V F + L ALE
Sbjct: 492 ETVGGVMGAGAANSTSVTFPGALAVDLGVSGDGASSFAVGFSGGDFLVDLELSALESDGK 551
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+++P + Q+AS SG + ++ SSS ++ + + + L TP + +I
Sbjct: 552 AEIVSQPRVVTADRQTASIKSGQEIPFQEASSSGATST-SFKEAVLSLEVTPQITPDDKI 610
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ + EV++ G + + P+ T V + +G TIVL G+ + + P L
Sbjct: 611 IMDL--EVTQDSRGEDTPNGPAINTNSVTTQVLVANGETIVLGGIFESTNTETTTKTPFL 668
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP LG LF+ ++ +E+ I TP ++K
Sbjct: 669 GDIPYLGRLFKRTQTTELRSELLIFITPKIIK 700
>gi|127514547|ref|YP_001095744.1| general secretion pathway protein D [Shewanella loihica PV-4]
gi|126639842|gb|ABO25485.1| general secretion pathway protein D [Shewanella loihica PV-4]
Length = 707
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 47/283 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
+ V+N L+I QV ++ I EV G Q + + G
Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 396
Query: 236 --------------------------------GKFVSEGGDFSVKGVLDRFSFETVLHAL 263
+ G + + F ++ A+
Sbjct: 397 WAAQDEKASNSCTGSGDNLTCTDNPDKKGDITLLAQALGKVNGMAWGVAMGDFGALIQAV 456
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLH 317
T LA P++T + Q ASF G + + +S +V + GV L
Sbjct: 457 SSDTKSNVLATPSITTLDNQEASFIVGDEVPVLTGSQNSSNGNSNPFQTVERKEVGVKLK 516
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
P + + L I+ EVS ++ R+ TTV SG +VL GL+ ++
Sbjct: 517 VVPQINEGTTVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINEE 574
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+Q+ + +P L IPILG LF++S +++ + + P +++
Sbjct: 575 VQESVQKVPFLGDIPILGHLFKSSSSGKKKKNLMVFIKPTIIR 617
>gi|294101775|ref|YP_003553633.1| type II and III secretion system protein [Aminobacterium
colombiense DSM 12261]
gi|293616755|gb|ADE56909.1| type II and III secretion system protein [Aminobacterium
colombiense DSM 12261]
Length = 556
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 51/284 (17%), Positives = 98/284 (34%), Gaps = 11/284 (3%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAE 204
+ + ++ + ++ E + KV + + QV ++ I E
Sbjct: 269 IASTAKMVKQATGVQKIVEDERLNTLYVTADREQLLKVERYVELIDRPGKQVMIEARIVE 328
Query: 205 VRRDILKQI-----GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-FET 258
+ ++ G + + + + +
Sbjct: 329 IADRASHEVASCLESIYKHWMLEYKGRGTPGRIGYSDSYSEGMFGEDITSLSGTVKKLDA 388
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
++ LE+ LAEP++ I G A ++ Y + G + + + G L
Sbjct: 389 LISTLEKEEKGHILAEPSVITIEGTKARIQLVQKYPYVSTRDEAGNPTYVSEEVGPQLEI 448
Query: 319 TPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
TP V I +++ EV G P R+ +T V + G V+ GL K
Sbjct: 449 TPFVGRDEIITIKLVIKTGEVVSWREGARGETYPETSTRQVETQVRVRDGEPFVIGGLFK 508
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ + + PLL IPILG+LF +E+ E+ I P ++
Sbjct: 509 ELKRGNQYKFPLLGDIPILGSLFSTQYTEKEKNEVIIIVIPHIL 552
>gi|328952531|ref|YP_004369865.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM
11109]
gi|328452855|gb|AEB08684.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM
11109]
Length = 794
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 62/268 (23%), Positives = 108/268 (40%), Gaps = 34/268 (12%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV +V IAEVR + G + + S + ++S + + G S V G +
Sbjct: 491 PRQVLNEVLIAEVRLTDDLKYGLEFLLGQSPTTATESTSDNSGALVASSTSTTIVPGTIQ 550
Query: 253 RFSFE-------------------------TVLHALERATAIRTLAEPTLTAISGQSASF 287
+++ L + LA P + A + Q A
Sbjct: 551 GVDINSPASAQFAAASGLTFVALDTANKLKGLINLLSSEGKVNILASPHIMAANNQEARI 610
Query: 288 TSGGQHLYKTVSS--------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
G + + S S +V + G++L P + + G + L I EVS
Sbjct: 611 MIGEEVPILSSQSIPLVSQTTSFQTNTVQYRNTGIILTVKPQINAKGLVTLEIAQEVSNA 670
Query: 340 VIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
P++ VR A T + T+VL GL+++D+ + + GIP L +IP+LG LF
Sbjct: 671 TATTTGVTSSPTFTVRHAKTQLITGDNQTVVLGGLIREDLTETQAGIPGLRRIPLLGPLF 730
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRD 426
++ +R++TE+ + TP +V +
Sbjct: 731 GSTGVSRQKTELVVLITPHIVTNLQEGA 758
>gi|284047888|ref|YP_003398227.1| type II and III secretion system protein [Acidaminococcus
fermentans DSM 20731]
gi|283952109|gb|ADB46912.1| type II and III secretion system protein [Acidaminococcus
fermentans DSM 20731]
Length = 405
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 85/412 (20%), Positives = 148/412 (35%), Gaps = 41/412 (9%)
Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
+A P A + + + ++ L+ I + +++Q +
Sbjct: 20 LAAEPLSLSVQEAPVRDVLQSMAQMAGRNLVLDSQIPGTLSLEIQ------------QLP 67
Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
P+ + + ++ G + +G + + + L L I +
Sbjct: 68 FPQALEMVTRSQG----LCFREEGNTLW---VASPERMDALYGRL-TVHPLEYISARETA 119
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
+T+ L + R + A + Q+TL+ I
Sbjct: 120 ETLKPLFSTPLAWSRDTNAILFHGSPGEENRLKEALKALD--------RPTRQITLEARI 171
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
+ +++G Q + G K G G SF+ L A
Sbjct: 172 LSLGESASRELGLQWDWSALPEGRKKGEGG---------FGGRLHLGHSYGASFQARLSA 222
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTP 320
L + + LA P + + G+ AS G V++ST ++ D G+ L +TP
Sbjct: 223 LCQEGKAKVLATPRIITLPGREASIFIGDHIPVVTEKVTNSTTTSTTEYVDAGIRLSYTP 282
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ G I ++ TEVS P + + R ADT V L T+V+ GL+ + Q
Sbjct: 283 YLSQDGLITAKVHTEVSTPTL-IAELKNYRITSRTADTHVRLREKETLVIGGLISEQEQH 341
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPD 431
E IPLLSK+P+LG LF+ +R TE+ + TP+L P PD
Sbjct: 342 RMEAIPLLSKLPLLGELFKFRSRSRNRTEVCMFLTPYLSGPGQPLPAAVLPD 393
>gi|205356095|ref|ZP_03222862.1| putative type II protein secretion system D protein [Campylobacter
jejuni subsp. jejuni CG8421]
gi|205345938|gb|EDZ32574.1| putative type II protein secretion system D protein [Campylobacter
jejuni subsp. jejuni CG8421]
Length = 470
Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats.
Identities = 65/272 (23%), Positives = 107/272 (39%), Gaps = 17/272 (6%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S K + L + QV + V+I V + G +
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQVNNE 250
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
F +F + G+ +F+++++ L + L+ P L A++ Q A + G
Sbjct: 251 NSFI-QFQNGQSFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309
Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
Y+ SS G + TT G++L+ P + G+I LRI +S+
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369
Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ P +K + V++ + T++L GL+ D K I LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+LF+ N + TEI TP +V V L
Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461
>gi|327479223|gb|AEA82533.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri DSM
4166]
Length = 706
Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats.
Identities = 51/334 (15%), Positives = 117/334 (35%), Gaps = 37/334 (11%)
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
++A L + + + + +V +G V + S + + ++ + +
Sbjct: 368 ELAPLRREVVQVNYAKAADIARLFQSVTSNGAVAEDRGSIAVDDRTNNIIAYQTQERLDE 427
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-- 236
+++ L+I QV ++ I E K +G + + ++ G
Sbjct: 428 LR--RIVAQLDIPVR-QVMIEARIVEANVGYDKALGVRWGGSYTNDNWGLYGKDGAIGRD 484
Query: 237 -------------------------------KFVSEGGDFSVKGVLDRFSFETVLHALER 265
++ + V D + L A+E+
Sbjct: 485 EDGGRYLLPGTDKVGNFTLEDALAPVPFVDLGVLNSTAGIGIGYVSDHGILDLQLSAMEK 544
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+++P + ++A G + Y+ SSS ++ + + + L TP +
Sbjct: 545 TGNGEIVSQPKVVTADKETAKILKGAEIPYQEASSSGATST-SFKEAALSLEVTPQITPD 603
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
RI + ++ P +P + + V + G TIV+ G+ + E +
Sbjct: 604 NRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLVTDGETIVIGGVFSNSQISSIEKV 663
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P L +P +G LFR +++E+ + TP ++
Sbjct: 664 PFLGDVPFVGRLFRRDIVEDKKSELLVFLTPRIL 697
>gi|307578579|gb|ADN62548.1| type IV pilus secretin PilQ [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 581
Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats.
Identities = 49/264 (18%), Positives = 105/264 (39%), Gaps = 28/264 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------------GSSSGPSKSFAA 232
DQV ++ I + +G + + GSS+ ++
Sbjct: 315 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTAGSSTSATRGLNV 374
Query: 233 DFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
D GG + + + +F+ + L AL++ + ++ P + + +
Sbjct: 375 DLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIKQ 434
Query: 290 GGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIG 342
G + Y T V+ +V + + L TPT+ + R+ L + E+ + +
Sbjct: 435 GKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITI 494
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+
Sbjct: 495 ANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRG 554
Query: 403 FNREETEIFIAATPFLVKPVAMRD 426
++++ E+ I TP +++
Sbjct: 555 KDKQKAELLIFVTPKVLRVANATA 578
>gi|154174515|ref|YP_001408333.1| type II and III secretion system protein [Campylobacter curvus
525.92]
gi|153793105|gb|EAU00522.2| type II and III secretion system protein [Campylobacter curvus
525.92]
Length = 506
Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats.
Identities = 56/277 (20%), Positives = 109/277 (39%), Gaps = 28/277 (10%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----ITGSSSGPS 227
+ +N + + QV + V+I V + + G S S G
Sbjct: 208 TGTPSQLRRVESYINEVQRRLKKQVIIDVSIIAVDLNNEYKQGVDWSKFELGFNSYLGGD 267
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLD-----RFSFETVLHALERATAIRTLAEPTLTAISG 282
+ ++ G G L+ FS + +++ LE + ++ P +T ++
Sbjct: 268 PTKPSNAGWNNRGNGLSAGFGQTLNIAANLNFSLDGMMNFLETNGKAKVISSPKVTTLNN 327
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVT----------THDYGVVLHFTPTVLSPGRIGLRI 332
Q A + G Y+ + + A ++ + G++L+ P V +I LRI
Sbjct: 328 QQALISVGDNINYRVMEQTDSANALNDRVKTTYKQYSVFIGILLNLLPEVSDNNKIMLRI 387
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKA---------DTTVELPSGGTIVLAGLLKDDIQQLKE 383
+S + + +R+ T V++ SG TIVL GL+ +
Sbjct: 388 NPSLSSFKYQEDDVRAQNTNIREIAPDTIQKKLSTVVQVNSGDTIVLGGLIGQTKNKQNT 447
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+P+L+ IP+LG F++++ + TE+ TP +V
Sbjct: 448 AVPILADIPLLGNAFKSTKDAVKTTELIFVITPRVVD 484
>gi|238896859|ref|YP_002921604.1| outer membrane porin HofQ [Klebsiella pneumoniae NTUH-K2044]
gi|238549186|dbj|BAH65537.1| outer membrane porin [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
Length = 414
Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 5/230 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGVL 251
QV L I + L+++G + + + S P + G +
Sbjct: 182 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNIGKI 241
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ E L ALER + +A P L A Q AS G + Y+ S +GATSV +
Sbjct: 242 NGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 301
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+
Sbjct: 302 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETLA 361
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++
Sbjct: 362 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 411
>gi|221069059|ref|ZP_03545164.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1]
gi|220714082|gb|EED69450.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1]
Length = 703
Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats.
Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 26/247 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------------GPSKSF 230
QV ++ I E R + +G + S G +
Sbjct: 450 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSGSGSSSKFPSGNFVNL 509
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
A G FSV L ALE + ++ P L A G
Sbjct: 510 PASVAGVNTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 569
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
++ Y + GAT+++ + L TP + G I L + +V++ G +
Sbjct: 570 TEYPYSVTAP-NGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 626
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ T V + +GGT+V+ G+ + + +PL +P+LG LFR++ + E+
Sbjct: 627 IDTKHIKTQVLVENGGTVVIGGIFEMEETNQLNKVPLFGDLPVLGHLFRSNTKASTKREM 686
Query: 411 FIAATPF 417
+ TP
Sbjct: 687 LVFITPK 693
>gi|332977545|gb|EGK14316.1| type IV pilus biogenesis protein PilQ [Psychrobacter sp.
1501(2011)]
Length = 608
Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats.
Identities = 51/312 (16%), Positives = 105/312 (33%), Gaps = 43/312 (13%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G + + T + ++ + +++ ++I QV ++ I
Sbjct: 297 KGSSTLLSSRGVIAVDTRTNTLIVKDTADSINNIRMLISQIDIP-VQQVMIEARIVSATD 355
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFG-------------------------------- 235
+ K++G + I + + +
Sbjct: 356 NFSKELGVKWGILSNGVANNDTLLVGGSDQTLADLKQFSRRNTTFKGKPVSYPDYAVSRP 415
Query: 236 -------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
G G + + L A++ ++ P + + Q+A +
Sbjct: 416 DNLNIDLGIANPAGSIAFGILSMSDLMIDLELSAMQAEGRGEVISTPKILTLDKQTAKVS 475
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
SG + Y++ S G T + + L TP + G I L++ E P + +
Sbjct: 476 SGTKIPYQSESEGGGTT-TQFEEALLSLEVTPNITPEGEISLQLNIENGRPNPVSSG--V 532
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
+ T V + G TIVL G+ ++ I E +P +P+LG LF+ ++
Sbjct: 533 ILIDTDRLSTHVTVADGQTIVLGGIYRNQIFNNVEKVPFFGDLPLLGRLFKKDLRRNDKQ 592
Query: 409 EIFIAATPFLVK 420
E+ I TP L++
Sbjct: 593 ELLIFVTPTLIQ 604
>gi|317494398|ref|ZP_07952812.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917648|gb|EFV38993.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 437
Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats.
Identities = 76/422 (18%), Positives = 153/422 (36%), Gaps = 33/422 (7%)
Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV-----PVDVQDVLVSDPTKADVV 80
P + A + + + +++ +++ + V + + + ++
Sbjct: 30 TPITLAFSDAPLVNVLQALADNQHLNLIVSEDVKGNTSLKLVDVPWKRAMQAIARLHELS 89
Query: 81 V-HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
+ + +++ Q ++ + + L + L++ D+ ++
Sbjct: 90 IEQTGNILFV------QTMAVVDKRQERVHNKQLQENAQRPISLTIALQQADVDAVVKNL 143
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+L D + L + Q + ++ QV L
Sbjct: 144 TQQKGGLLSAQGTVSADPRTNTILVRDLPENTRAVQAWIDELDQPVS--------QVQLT 195
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAADFGGKFVSEGGDFSVKG 249
I + R+ L ++G + GS S F + S F +
Sbjct: 196 AHIVTINRESLNELGVRWGTAGSDETTSSDSDSSNFRLNQFNMGLPAEGRSFNAGFQIAR 255
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
+ R + + + +A P L A + Q+AS G + Y+ S ++G+TS+
Sbjct: 256 IGGRLLELELSALEQED-NVEIIASPHLMATNLQTASIKQGTEIPYEVSSGASGSTSIEF 314
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ + + TP V+ G+I L +Q + P I G+ + ++ T V L G T
Sbjct: 315 KEAVLGMEVTPRVMRNGKITLTLQITQNMPGRSIKQGDGEALAIDKQEIKTQVTLSDGDT 374
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
++L G+ + K +P L IP+LGALFR+S + E+ I TP LVK L
Sbjct: 375 VILGGIFQRQTTHGKTQVPKLGDIPLLGALFRDSTDASKRRELVIFITPKLVKTETPSSL 434
Query: 428 SR 429
R
Sbjct: 435 LR 436
>gi|283851919|ref|ZP_06369195.1| type II and III secretion system protein [Desulfovibrio sp.
FW1012B]
gi|283572643|gb|EFC20627.1| type II and III secretion system protein [Desulfovibrio sp.
FW1012B]
Length = 542
Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats.
Identities = 58/299 (19%), Positives = 110/299 (36%), Gaps = 23/299 (7%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+ S + + L + A S ++ ++ QV++ + EV D
Sbjct: 225 KDGSASLQILPLKGSNTVVVTALPAAQSQVANILANMDKRTP-QVSISAMLVEVILDESS 283
Query: 212 QIGFQHSITGSSSG-----------------PSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
++G + SS S+S +A+ + +
Sbjct: 284 KMGLDWKLRAWSSNKAYNEFAQDTLAKTLETGSQSASANLAKYSDAGTKAAMFFNIFPGG 343
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----VTTH 310
++H + T + L+ P L Q AS + G + + +
Sbjct: 344 YLSMLVHMISSDTNAKILSSPHLLVADNQEASISLGREIPILKEYRTDTNNDPIKTYSQR 403
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
+G+ L TPT+ G + L++ ++S D R ADTTV + T+V+
Sbjct: 404 TFGLELKMTPTIADNGDVTLKVSQKLSNLDEQDTTNDTYKASERTADTTVVVHDKQTLVI 463
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
GL ++ G P KIP+LG LF ++++ E+ + TP +V+ P+ +S
Sbjct: 464 GGLTMQTDEKEDSGTPTARKIPVLGYLFGTKSTSKQKRELLLFITPTVVRDPIQADAMS 522
>gi|152972270|ref|YP_001337416.1| outer membrane porin HofQ [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|150957119|gb|ABR79149.1| putative transport portein [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
Length = 413
Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 5/230 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGVL 251
QV L I + L+++G + + + S P + G +
Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNIGKI 240
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ E L ALER + +A P L A Q AS G + Y+ S +GATSV +
Sbjct: 241 NGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 300
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+
Sbjct: 301 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETLA 360
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++
Sbjct: 361 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410
>gi|209515818|ref|ZP_03264681.1| general secretion pathway protein D [Burkholderia sp. H160]
gi|209503845|gb|EEA03838.1| general secretion pathway protein D [Burkholderia sp. H160]
Length = 792
Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats.
Identities = 65/324 (20%), Positives = 111/324 (34%), Gaps = 39/324 (12%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
V++ L+ QV ++ I E+ + +G Q + + + A G ++
Sbjct: 401 VIDQLDAR-RAQVYIEALIVELNSNTAGNLGIQWQVANGNLFAGTNLATGTGNSIINLTA 459
Query: 244 DFSVKGVLDRF-------------------------SFETVLHALERATAIRTLAEPTLT 278
+ +L AL + L+ P L
Sbjct: 460 AAAADASTGGLATALGASGLQQGLNVGWIHNLFGVQGLGALLQALSQTADANVLSTPNLI 519
Query: 279 AISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + A G +T S S + D G+ LH P + G + L
Sbjct: 520 TLDNEEAKIIVGTNVPIQTGSYSNLTSSATSTAFNTFDRVDIGLTLHVKPQITDGGILKL 579
Query: 331 RIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
++ TE S V G N P + R +TV +G IVL GL++D+ Q +P
Sbjct: 580 QLYTEDSAIVNGTNNSTTNPAGPEFTKRSIQSTVLCDNGEIIVLGGLMQDNYQVSNSKVP 639
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFF 445
LL IP +G LFR+ + R +T + + P ++ + +S Y
Sbjct: 640 LLGDIPWVGQLFRSEQKTRNKTNLMVFLRPVILSDRETTQAVSANRYDYIQGVQGAYRSD 699
Query: 446 NRVNKIYGPKEASEVEGQNYKGAI 469
NRV K + +G +
Sbjct: 700 NRVMKDRDDPVVPPMPIGPSQGGV 723
>gi|308271769|emb|CBX28377.1| hypothetical protein N47_G37010 [uncultured Desulfobacterium sp.]
Length = 526
Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats.
Identities = 55/269 (20%), Positives = 104/269 (38%), Gaps = 40/269 (14%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------------------------- 222
Q+ +K I E +D + +G Q +
Sbjct: 244 RPTPQILIKANIVETTQDTARNLGIQWGGMYNPRLGNHDLWVSPGGSTNSTTPTNPISGN 303
Query: 223 ---SSGPSKSFAADFGGKFVSE------GGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
S G + + FG F + G + G + E L AL+ + L+
Sbjct: 304 YTPSYGSTSLSSQGFGINFPASMSDAASGTLGLMFGTIGGNILEMQLSALQNNGKLNILS 363
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGL 330
P++T + Q+A +G + Y T + T + SV D + L P V+ + +
Sbjct: 364 SPSITTLDNQTAYTENGERIPYVTEETGTTGSITKSVKFEDVVLRLEIKPHVIDSKNLKM 423
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ + +E N P ++ TT+ + +G TIV++GL K Q + +P+L
Sbjct: 424 EVLVKKNEVDNSRNVLGNPYIIKKETKTTLIVKNGETIVISGLTKQKKQDSENSVPVLRD 483
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
+P+ G +F+ + ++ E+ I TP ++
Sbjct: 484 MPLFGRMFKGTGKSKSMEEVLIFITPTIL 512
>gi|192359937|ref|YP_001980940.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107]
gi|190686102|gb|ACE83780.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107]
Length = 714
Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 116/303 (38%), Gaps = 36/303 (11%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + + E + + + ++ +++ ++I QV ++ I
Sbjct: 411 TGSVLSERGQGIVDERTNSIIITDTADRIEAFR--RLVEQIDIPIR-QVMIESRIVIANT 467
Query: 208 DILKQIGFQHSITGSSSGPS--------------------KSFAADFGG----------- 236
D +Q+G + G S ++ + G
Sbjct: 468 DFERQLGIRWGGAGYHLNNSRLINVAGSQSGLDDEDGTSPANWFTNGGTLNLTENNMVNL 527
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ G +V + D + L ALE + +++P + Q A SG + Y+
Sbjct: 528 PVNNPAGSIAVGVLTDSVFLDMELSALETSGYAEIVSQPKVITSDKQKAVIKSGKEIAYQ 587
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
S S G T + ++L P + RI + + + V + +PS V +
Sbjct: 588 ETSPSGGTT-TGFKEAVLMLEVVPQITPDNRIIMDLFVTK-DSVGEITQQGVPSLDVTRL 645
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T V + +G T+VL G+ + + + +P+L IP LG LF+ + N+ +TE+ I TP
Sbjct: 646 QTKVLVNNGQTVVLGGVFSLESTKGESKVPVLGDIPYLGRLFKRTVDNQFKTELLIFVTP 705
Query: 417 FLV 419
L+
Sbjct: 706 KLI 708
>gi|307545809|ref|YP_003898288.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
gi|307217833|emb|CBV43103.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
Length = 700
Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats.
Identities = 63/265 (23%), Positives = 103/265 (38%), Gaps = 31/265 (11%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------- 244
QV ++ IAE+ K++G Q S + + G +
Sbjct: 367 RRAQVAVEAIIAEITESRAKELGVQWLFGDISGEGTVPAGGVNFPSASTPGINQIAAAAA 426
Query: 245 -------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ SF +L+AL T L+ P+LT + A
Sbjct: 427 SQDASALGSLLGNLNGVTAGVGRLSSGGVSFAMLLNALRSDTQTNLLSTPSLTTLDNAEA 486
Query: 286 SFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
S G + + TV ++ ++ D GV L+ PT+ + I L I EVS
Sbjct: 487 SILVGQEVPFVTGSTTVDNTNPFQTIQREDVGVKLNIRPTIGADNSIRLEIVQEVSSIDE 546
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
GV A D+ R+ +TTV GG IVL GL+ D+ ++ +PLL IP +G LFR
Sbjct: 547 GVKASDV-VTNKREIETTVLTQDGGIIVLGGLISDENANAEQKVPLLGDIPGVGRLFRYD 605
Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426
R +++ + + +++
Sbjct: 606 RDTQDKRNLMVFIRARVLRDAPQTQ 630
>gi|254229258|ref|ZP_04922676.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp.
Ex25]
gi|151938182|gb|EDN57022.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp.
Ex25]
Length = 547
Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats.
Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 30/304 (9%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
+L V + S + + T + + ++V L + + QV L+ I
Sbjct: 220 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 279
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256
EV + Q G S +S G S S + + + +F
Sbjct: 280 LEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPPLDAIGTLLGGQTNVTISDGNF 339
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
VL + + L+ P +TA + Q + G + T SS
Sbjct: 340 NAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVE 399
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGD--------MPSYRVRK 355
+T G+ L TP + + G + L + EVSE V +N G + +R+
Sbjct: 400 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEVKKLNLGGEFQNIQLPLAKSSIRE 459
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+D+ + G +V+ GL+K ++L +P L +P LG LFRN E+TE+ I
Sbjct: 460 SDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVTEKTELVILLK 519
Query: 416 PFLV 419
P +V
Sbjct: 520 PTVV 523
>gi|269968038|ref|ZP_06182076.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B]
gi|269827395|gb|EEZ81691.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B]
Length = 546
Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats.
Identities = 64/304 (21%), Positives = 111/304 (36%), Gaps = 30/304 (9%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
+L V + S + + T + + ++V L + + QV L+ I
Sbjct: 219 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 278
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256
EV + Q G S +S G S S + + + +F
Sbjct: 279 LEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPPLDAIGTLLGGQTNVTISDGNF 338
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
VL + + L+ P +TA + Q + G + T SS
Sbjct: 339 NAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVE 398
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
+T G+ L TP + + G + L + V E V ++ +R+
Sbjct: 399 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSIRE 458
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+D+ + G +V+ GL+K ++L +P L +P LG LFRN E+TE+ I
Sbjct: 459 SDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVTEKTELVILLK 518
Query: 416 PFLV 419
P +V
Sbjct: 519 PTVV 522
>gi|114328429|ref|YP_745586.1| general secretion pathway protein D [Granulibacter bethesdensis
CGDNIH1]
gi|114316603|gb|ABI62663.1| general secretion pathway protein D [Granulibacter bethesdensis
CGDNIH1]
Length = 779
Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats.
Identities = 68/329 (20%), Positives = 122/329 (37%), Gaps = 19/329 (5%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEV 205
G + + + + + S + +L QV + IAEV
Sbjct: 441 AGNMDDAGTDPNTLRIVPNTQNNAVLIFATESEYGPIETMLRKIDILPLQVRIDAIIAEV 500
Query: 206 RRDILKQIGFQHSITGSSSGPS-------KSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
+ + G Q + + A+ G + G + + S +
Sbjct: 501 ALNDTLRYGTQFFFREGGLNSAMQTAAATAATASTGGLLAAAIPGFSNGFLLTGSSSSQL 560
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDY 312
+ L+ T ++ L+ P L + + A G Y T S +V+
Sbjct: 561 AMTLLQSVTKVQVLSSPELMVLDNEPARLQVGALVPYLTAQSQATIGQSAIINAVSYQQT 620
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVL 370
GV+L+ TP V + G + L I EVS+ +N + P+++ R + V + G T+ L
Sbjct: 621 GVILNVTPRVNNSGLVTLDISQEVSDVDTSINTNGISSPAFQQRSVQSRVVVQDGQTVGL 680
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGL++D+ + G+P L +P+LG++F NR TE+ I TP ++ RD
Sbjct: 681 AGLIRDNNSRANGGVPFLKDVPVLGSVFGQQNNNRSRTELLILVTPHVIH--DQRDARAL 738
Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
+ A +N + A
Sbjct: 739 TEDLRQNLRDAALVPQELNHLRPTGSADP 767
>gi|313682348|ref|YP_004060086.1| type ii and iii secretion system protein [Sulfuricurvum kujiense
DSM 16994]
gi|313155208|gb|ADR33886.1| type II and III secretion system protein [Sulfuricurvum kujiense
DSM 16994]
Length = 535
Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 99/242 (40%), Gaps = 16/242 (6%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-------- 244
QV ++ I E+ K++G ++ ++G + G + F + +
Sbjct: 256 RQQVYVRAKIIEISEGKSKEVGIKYGLSGGTVGSNGVFTFNTMLGDGTAAAVALDPSVTT 315
Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
F + + + + L A L+EP++ I +S G + +
Sbjct: 316 ALKFDIPTITSGIALGANIALLNTNGAAEILSEPSILCIDNLESSIYVGKTESISSGVTQ 375
Query: 302 TGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
T +T D G+ L P + + ++ L + ++ + N +PS R+
Sbjct: 376 GVGTGITQNFTRQDIGLTLKIKPRLSNDNKVLLGVNAKLEDIDSNTN-LQLPSTTKREVI 434
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T+ + +G T+++ GL+++ +P L IP+LG LFR+ ++ + I TP+
Sbjct: 435 TSAIVNNGETVIIGGLIREKTDHNDNRVPFLGDIPVLGHLFRDESSKTDKINLVILLTPY 494
Query: 418 LV 419
++
Sbjct: 495 II 496
>gi|271500445|ref|YP_003333470.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya
dadantii Ech586]
gi|270344000|gb|ACZ76765.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya
dadantii Ech586]
Length = 690
Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats.
Identities = 67/447 (14%), Positives = 139/447 (31%), Gaps = 33/447 (7%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99
G + IS+ N + D + V++ A V + + + + G +
Sbjct: 158 TGPAEYISLIRNFSQQRETKDDRRKVMIFPLRYASVSDRTIQYRDQRLVIPGVATMLNEL 217
Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--------HGMV 151
+ + + + D++ + + +L G
Sbjct: 218 MDGNRSAPAGASGAVSGMGSEGGMAQANGAGGQDAS-QAIERNARAMLARLASRASSGEA 276
Query: 152 RTIQDSQRAV-ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVRRD 208
+ + + ++S + + + ++ L++ Q V + I +V R
Sbjct: 277 ASSRKKDQLNGKVSADVRNNALLIRDDEKRREEYQQLIDKIDVPQNLVNIDAIILDVDRT 336
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L ++ + + + FVS D F + ALE
Sbjct: 337 ALSRLEANWQGKLGAVTGGANLMSGSSTLFVS-----------DFKRFFADIQALEGEGT 385
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+A P++ + Q A +V G L TP V+ G
Sbjct: 386 ASIVANPSVLTLENQPAVIDFSRTAFITAT--GERVANVQPVTAGTSLQVTPRVVGRGST 443
Query: 329 G-LRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
+++ ++ + + N S R T + +VL G ++ + +P
Sbjct: 444 SSIQLVIDIEDGQVETNTEGNASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDKRVP 503
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
LL IP +G LF + + E TP L+ D+ +DA
Sbjct: 504 LLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSVDNRRQLNDAMGRVAQ 563
Query: 447 RVNK--IYGPKEASEVEGQNYKGAIGF 471
R +K ++G E + + + + GF
Sbjct: 564 RNSKTDLFGMVENAMRDLASGQTPAGF 590
>gi|152990751|ref|YP_001356473.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
gi|151422612|dbj|BAF70116.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
Length = 507
Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats.
Identities = 65/328 (19%), Positives = 127/328 (38%), Gaps = 39/328 (11%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIA 203
+HG++ +D +A + + ++V + + ++V + V+I
Sbjct: 173 IHGILNRPEDEYQAPDPIVNINAGLITVTATKKQIERVEKYIATIQNRLHNEVMIDVSIL 232
Query: 204 EVRRDILKQIGFQHSIT----GSSSGPSKSFAADFGG--------KFVSEGGDFSVKGVL 251
V + G S G +F + +F+V+ +
Sbjct: 233 AVILNDQYTNGIDWSRFSLLVNGDYGADNTFTPGTNTKLLSYTREGSGTSTSNFNVQRTI 292
Query: 252 DRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---------KT 297
+ + +++ LE+ + TL+ P L ++ Q A + G Y +
Sbjct: 293 GSYFDASVNLAGIINFLEKNGQVITLSNPKLMTLNNQPAIISIGDTINYNVPTSIVISQN 352
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDM--- 348
T + + ++ G++L+ TP + G I LRI +SEP N +
Sbjct: 353 GGLGTQSFTPSSVFIGILLNITPEITENGEIILRINPSISEPRDPKQLDQTTNENGIRQI 412
Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P +K + V++ G T++L GL+ + G+P+L IP+LG LFR+ N +
Sbjct: 413 APDISEKKISSVVKVKDGSTLILGGLISNIKNFTINGVPVLRDIPVLGGLFRSKARNNKR 472
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYS 435
E+ P ++K + + S D YS
Sbjct: 473 FELVFIIKPRIIKESSTDNYSLKDLGYS 500
>gi|57238497|ref|YP_179628.1| general secretory pathway protein D [Campylobacter jejuni RM1221]
gi|57167301|gb|AAW36080.1| general secretory pathway protein D [Campylobacter jejuni RM1221]
Length = 470
Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats.
Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S K + L + QV + V+I V + G +
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQVNNE 250
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
F +F + G G+ +F+++++ L + L+ P L A++ Q A + G
Sbjct: 251 NSFI-QFQNGQGFVKNLGLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309
Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
Y+ SS G + TT G++L+ P + G+I LRI +S+
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369
Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ P +K + V++ + T++L GL+ D K I LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+LF+ N + TEI TP +V V L
Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461
>gi|16124428|ref|NP_418992.1| general secretion pathway protein D [Caulobacter crescentus CB15]
gi|221233111|ref|YP_002515547.1| type II secretion pathway protein D [Caulobacter crescentus NA1000]
gi|13421292|gb|AAK22160.1| general secretion pathway protein D [Caulobacter crescentus CB15]
gi|220962283|gb|ACL93639.1| type II secretion pathway protein D [Caulobacter crescentus NA1000]
Length = 687
Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats.
Identities = 58/324 (17%), Positives = 113/324 (34%), Gaps = 41/324 (12%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
+ + +V+ L++ +QV ++ + EV
Sbjct: 319 VAATPSANGPQATIARFPGANALIINAPPETQRTLAEVIRQLDVR-REQVLVEAIVVEVT 377
Query: 207 RDILKQIGFQHSITGSSSGPSKSFA---------------------------------AD 233
KQ+G Q + G++ A
Sbjct: 378 DGTAKQLGVQFLLGGTNGTIPFVATNYTNATPSLLPLVGAAATTTSGADTEALKSLRDAA 437
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
+ G V G F +++A+++ T L+ P++ + + A G +
Sbjct: 438 VSSLLTASGVTSGVVGRSGDALFGAIINAVKKDTGSNLLSTPSIMTLDNEEARILVGQEV 497
Query: 294 LYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGD 347
T ++ ++ + G+ L P + + G I L ++ EVS V+
Sbjct: 498 PITTGEVLGDSNANPFRTIQRQNVGIQLEVKPQINAGGGITLFLRQEVSSVAGPVSVGSS 557
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
R+ +TT + G +VL GLL Q + P L +P LGALFR++ R++
Sbjct: 558 ELIINKREIETTALVDDGDIVVLGGLLDQQETQSAQRTPGLGDVPGLGALFRSTARERKK 617
Query: 408 TEIFIAATPFLVK-PVAMRDLSRP 430
T + + P +++ R+L+ P
Sbjct: 618 TNLMVFIRPRIIRSSADARNLTAP 641
>gi|163802893|ref|ZP_02196781.1| MSHA biogenesis protein MshL [Vibrio sp. AND4]
gi|159173300|gb|EDP58126.1| MSHA biogenesis protein MshL [Vibrio sp. AND4]
Length = 531
Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 108/303 (35%), Gaps = 29/303 (9%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
+L V + S + + T + + ++V L + + QV L+ I
Sbjct: 205 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDEIREVREFLGVSQERMQRQVILEAKI 264
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEGGDFSVKGVLDRFSFE 257
EV Q G S +S G S S + +F+
Sbjct: 265 LEVTLSDGYQQGIDWSNMSASIGNSGSIVVDRSPLSLPLDAIGTLLGGQTNVTFSDGNFK 324
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSV 307
V++ + + L+ P +TA + Q + G + T SS +
Sbjct: 325 AVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVEL 384
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---------NAGDMPS--YRVRKA 356
T G+ L TP + G + L + V E + N +P +R++
Sbjct: 385 TPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEIKKLNLGGEFNNVQLPLAKSSIRES 444
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
D+ + G +V+ GL+K + +P L +P LG LFRN ++TE+ I P
Sbjct: 445 DSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNVTQKTELVILLKP 504
Query: 417 FLV 419
+V
Sbjct: 505 TVV 507
>gi|299529630|ref|ZP_07043067.1| type IV pilus secretin PilQ [Comamonas testosteroni S44]
gi|298722493|gb|EFI63413.1| type IV pilus secretin PilQ [Comamonas testosteroni S44]
Length = 704
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 26/247 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------------GPSKSF 230
QV ++ I E R + +G + S G +
Sbjct: 451 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSSSGSSSKFPSGNFVNL 510
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
A G FSV L ALE + ++ P L A G
Sbjct: 511 PASVSGINTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 570
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
++ Y + GAT+++ + L TP + G I L + +V++ G +
Sbjct: 571 TEYPYSVTAP-NGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 627
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ T V + +GGT+V+ G+ + + +PL +P+LG LFR++ + E+
Sbjct: 628 IDTKHVKTQVLVENGGTVVIGGIFELEETNQLNKVPLFGDLPVLGHLFRSNTKASSKREM 687
Query: 411 FIAATPF 417
+ TP
Sbjct: 688 LVFITPK 694
>gi|56478233|ref|YP_159822.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1]
gi|56314276|emb|CAI08921.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1]
Length = 719
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 63/307 (20%), Positives = 114/307 (37%), Gaps = 37/307 (12%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G +A ++ + + + + V++LL+ QV ++ IAE+
Sbjct: 337 SGNASDRGGMIQADPVNNALI--IVAPEAIYRNLRHVIDLLD-RRRAQVYIEALIAEIST 393
Query: 208 DILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----------- 253
+ + G Q + G+ S + +FGG + G G + +
Sbjct: 394 ERAAEFGIQWQSANTPGAGSSSTFFGGTNFGGAGQNIIGAAQNIGSVGKGMNFLLGGGTV 453
Query: 254 -----------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F+ + LE + L+ P+L + + A G + T +
Sbjct: 454 KVPINGQMVEVFNLSLLARFLETDSRTNILSTPSLVTLDNEGAKIVVGRNLPFITGQYTN 513
Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
++ D G+ L P + G I L I E S V ++ P+
Sbjct: 514 TGGGTTPANPFQTIERRDVGLTLEVRPQISEGGAIRLDIYQEASSVVPTLDDSAGPTTNK 573
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R +TV + G I L GL++DD +E +PLL IP G+LFR R +T + +
Sbjct: 574 RSIQSTVLVDDGAIIALGGLVEDDYSSGEEKVPLLGDIPFAGSLFRYDTRRRTKTNLVVF 633
Query: 414 ATPFLVK 420
P +++
Sbjct: 634 LRPVILR 640
>gi|160901128|ref|YP_001566710.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
gi|160366712|gb|ABX38325.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
Length = 787
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 56/272 (20%), Positives = 98/272 (36%), Gaps = 38/272 (13%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------- 241
QV ++ I E++ + L Q G Q S++G + +
Sbjct: 432 GRRAQVLIESLIVELKDNRLAQFGVQWQAILSNNGKVLGSIGNNSSVAGANILSLLSAFN 491
Query: 242 --------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ V + + + L+ + L+ P L +
Sbjct: 492 KDGSINASGITGDTVNSMRGTNLGFTQSVNGNTTLGFLANFLQNSGDANILSTPNLMTLD 551
Query: 282 GQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
+ A G T S + T+V D G++L P + G + L +
Sbjct: 552 NEEARIIVGQNVPMVTGSYASNSTGGTVNPFTTVERKDVGLMLRVRPQINENGTVKLAVF 611
Query: 334 TEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
EVS + + R ++ V + G IVL GL+ D+ Q ++ IPLL IP
Sbjct: 612 QEVSSVDESTRKDTNGLTTNKRSIESNVLVEDGNIIVLGGLIDDNYSQAEDRIPLLGDIP 671
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
+LG LFRN+ R +T + + P +++ A
Sbjct: 672 VLGNLFRNTNRKRNKTNLMVFLRPVVMRDAAA 703
>gi|330012388|ref|ZP_08307367.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3]
gi|328533849|gb|EGF60524.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3]
Length = 408
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 5/230 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGVL 251
QV L I + L+++G + + + S P + G +
Sbjct: 176 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNIGKI 235
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ E L ALER + +A P L A Q AS G + Y+ S +GATSV +
Sbjct: 236 NGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 295
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+
Sbjct: 296 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETLA 355
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++
Sbjct: 356 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 405
>gi|229530247|ref|ZP_04419635.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)]
gi|229332020|gb|EEN97508.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)]
Length = 559
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 61/263 (23%), Positives = 97/263 (36%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
QV L+ I EV Q G S SS+G S + + S SV
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPG 332
Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
T SS + ++T G+ L TP + G + L + V E
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452
Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535
>gi|42523102|ref|NP_968482.1| general secretion pathway protein D [Bdellovibrio bacteriovorus
HD100]
gi|39575307|emb|CAE79475.1| general secretion pathway protein D [Bdellovibrio bacteriovorus
HD100]
Length = 765
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 56/290 (19%), Positives = 107/290 (36%), Gaps = 30/290 (10%)
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V+++ + S + V+N+L+ DQV ++ I E+ + G +
Sbjct: 418 VKITADKTTNSLIVTASKQDYDVVLNILSKIDTPRDQVFVEAIIMEMSVNDGNSWGIGYY 477
Query: 219 ITG-SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----------------SFETVL 260
G S G F+S G + S +
Sbjct: 478 QYGDSGYGKVGFNGLSNINDFLSPTGGSGAVIGFGQGKTVEVTDPVSKTTLKIPSLLGFI 537
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGG-----QHLYKTVSSSTGATSVTTHDYGVV 315
+ L+ A L+ P L + Q G +++ +S T + D +
Sbjct: 538 NFLKTAKKANILSTPQLMTLDNQEGELEVGDKVVVGENVQNVGTSGTTVRTPQFEDATIK 597
Query: 316 LHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSGGTIVL 370
L P + +I + I+ +V++ R T + + +G T+VL
Sbjct: 598 LAIKPFISPASNQIRMEIKQQVAQLSTASTPKAFQDSTQPLAKRSLKTVINVNNGDTVVL 657
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
GL+K+ Q+ +PLL IPI+G LF++ +++T + + TP +V+
Sbjct: 658 GGLMKEQDQESVTKVPLLGDIPIIGWLFKSRTIVKDKTNMVVFLTPKIVR 707
>gi|283955079|ref|ZP_06372582.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni 414]
gi|283793446|gb|EFC32212.1| general secretory pathway protein D [Campylobacter jejuni subsp.
jejuni 414]
Length = 470
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 17/272 (6%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S K + L + QV + V+I V + G +
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQANNE 250
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
F + + G G+ +F+++++ L + L+ P L A++ Q A + G
Sbjct: 251 NSFI-QLQNGQGFVKNLGLRANLNFDSIVNFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309
Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
Y+ SS G + TT G++L+ P + G+I LRI +S+
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369
Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ P +K + V++ + T++L GL+ D K I LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+LF+ + + TEI TP +V L
Sbjct: 430 SLFKGEVLDSKATEIVFIITPSIVDSTNAPSL 461
>gi|262393141|ref|YP_003284995.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25]
gi|262336735|gb|ACY50530.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25]
Length = 530
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 30/304 (9%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
+L V + S + + T + + ++V L + + QV L+ I
Sbjct: 203 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 262
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256
EV + Q G S +S G S S + + + +F
Sbjct: 263 LEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPPLDAIGTLLGGQTNVTISDGNF 322
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
VL + + L+ P +TA + Q + G + T SS
Sbjct: 323 NAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVE 382
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGD--------MPSYRVRK 355
+T G+ L TP + + G + L + EVSE V +N G + +R+
Sbjct: 383 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEVKKLNLGGEFQNIQLPLAKSSIRE 442
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+D+ + G +V+ GL+K ++L +P L +P LG LFRN E+TE+ I
Sbjct: 443 SDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVTEKTELVILLK 502
Query: 416 PFLV 419
P +V
Sbjct: 503 PTVV 506
>gi|85860506|ref|YP_462708.1| type IV secretion [Syntrophus aciditrophicus SB]
gi|85723597|gb|ABC78540.1| type IV secretion [Syntrophus aciditrophicus SB]
Length = 590
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 64/393 (16%), Positives = 132/393 (33%), Gaps = 57/393 (14%)
Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
AD+ + L + G + V G + + + L + +
Sbjct: 211 ADIRAV----LRLLAETGGVSIVAGPDVKGS------VNVHMRDVPWDQALETILDIHGL 260
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ + + + V +++ ++ E+ + + ++ + L Q+
Sbjct: 261 AKKEMGNVI----SVMSLEKKKKDEEVRKAAEKDQIEAEANRKKREQDL-LAEKGRLRQI 315
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------------- 240
+++ I E + +K +G S+ S F A +G +
Sbjct: 316 SIEAKIVEASEEFIKNLGVTWGGAVSARMGSYPFQAAYGTNTRTTEGQTNPVSYPYPAGI 375
Query: 241 -----------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
V + + + ALE ++ + ++ P +
Sbjct: 376 GYTTSGTGAVLSQAAVNMPGSIIGTPTLGVVIGGSKAVLDVQIAALESTSSGKIISTPKV 435
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
T + G +A G + Y G V + + L TP++ GRI ++I
Sbjct: 436 TTMDGVTAKIKQGEEIPYT-TYDDKGYPRVNFKEAVLKLEVTPSITPDGRISMQINATND 494
Query: 338 EPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
GD + D+ V + G TIV+ G+ K G+P LS+IP+LG
Sbjct: 495 RGDYAKAGILGDNVPIIKNEVDSKVVVEDGTTIVIGGVSKTTDDTSTSGVPWLSRIPVLG 554
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
LF++ +R ++ I TP ++ V +
Sbjct: 555 WLFKSENTDRTRKQLLIFVTPKIIPDVEPGAAA 587
>gi|329905849|ref|ZP_08274237.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae
bacterium IMCC9480]
gi|327547489|gb|EGF32305.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae
bacterium IMCC9480]
Length = 327
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 57/279 (20%), Positives = 96/279 (34%), Gaps = 46/279 (16%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
K++ + ++A QV ++ I E K +G + T + G
Sbjct: 46 KLIQITDVATR-QVLIEARIVEADDTFSKNLGAKLGFTDLRTARGGDSGYQLSGNNRVGL 104
Query: 237 ------------------------------------KFVSEGGDFSVKGVLDRFSFETVL 260
+ S+ L
Sbjct: 105 TGNYLGVGEQTGQATITDGSFIPNSQFVSLPAAGINGLNAGSLAVSLFSAAANRFLNLEL 164
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
ALE + ++ P + Q A G + Y+ +SS GATSV + L TP
Sbjct: 165 SALEADGRGKVISSPRVVTADQQQALIEQGEEIPYQKATSS-GATSVEFKKANLKLEVTP 223
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ G I L +V++ G A + + T V++ +GGT+VL G+
Sbjct: 224 QITPDGNIIL--TVDVNKDSRGAPAPGGFAINTKHVKTNVQVENGGTVVLGGIFTQRELD 281
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP IP++G LF+ + ++TE+ I TP +V
Sbjct: 282 SVTKIPFFGDIPVVGNLFKTTGRTNDKTELLIFITPKIV 320
>gi|187925905|ref|YP_001897547.1| general secretion pathway protein D [Burkholderia phytofirmans
PsJN]
gi|187717099|gb|ACD18323.1| general secretion pathway protein D [Burkholderia phytofirmans
PsJN]
Length = 791
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 60/273 (21%), Positives = 99/273 (36%), Gaps = 38/273 (13%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
V++ L+ QV L+ I E+ + +G Q + +S + V+
Sbjct: 402 VIDQLDAR-RAQVYLEALIVELNSNTSGNLGIQWQVANNSIFAGTNLQTGSSNSIVNLTA 460
Query: 244 DFSVKG-------------------------VLDRFSFETVLHALERATAIRTLAEPTLT 278
G + +L AL + L+ P L
Sbjct: 461 AAVAAGSTGGLAGALGNGTLQQGLNIGWIHNIFGVQGLGALLQALSQTADANVLSTPNLI 520
Query: 279 AISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + A G +T S S + D G+ LH P + G + L
Sbjct: 521 TLDNEEAKIVVGTNVPIQTGSYSNLTSATATSAFNTYDRVDVGLTLHVKPQITDGGILKL 580
Query: 331 RIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
++ TE S V G N P + R +TV +G IVL GL++D+ Q +P
Sbjct: 581 QLYTEDSAIVTGTNNAATNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVP 640
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
LL IP +G LFR+ + R +T + + P ++
Sbjct: 641 LLGDIPWIGQLFRSEQKTRNKTNLMVFLRPVII 673
>gi|54302288|ref|YP_132281.1| putative pilus assembly transmembrane protein [Photobacterium
profundum SS9]
gi|46915710|emb|CAG22481.1| putative pilus assembly transmembrane protein [Photobacterium
profundum SS9]
Length = 217
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 12/190 (6%)
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
AISG+ A F SGG+ + ++ ++GV L F PTV+S I L + EVS
Sbjct: 1 MAISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFIPTVMSADSINLALNIEVS 58
Query: 338 E----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
E P +PS R A TTVEL +G TI +AGLL ++I + E +P
Sbjct: 59 EISNQNAVSIRPSGTNTQFFVPSLSKRGAKTTVELGNGQTIGIAGLLNENITDVVEKLPG 118
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
L +PI+G LFR+ F + ETE+ I TP L KPV +D++ P D++ +D + + R
Sbjct: 119 LGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLPTDNFVEPNDWEYYLLGR 178
Query: 448 VNKIYGPKEA 457
++++ + A
Sbjct: 179 MSELKRNEPA 188
>gi|264676808|ref|YP_003276714.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2]
gi|262207320|gb|ACY31418.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2]
Length = 704
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 26/247 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------------GPSKSF 230
QV ++ I E R + +G + S G +
Sbjct: 451 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSSSGASTKFPSGNFVNL 510
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
A G FSV L ALE + ++ P L A G
Sbjct: 511 PASVSGVNTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 570
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
++ Y + GAT+++ + L TP + G I L + +V++ G +
Sbjct: 571 TEYPYSVTAP-NGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 627
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ T V + +GGT+V+ G+ + + +PL +P+LG LFR++ + E+
Sbjct: 628 IDTKHVKTQVLVENGGTVVIGGIFELEETNQLNKVPLFGDLPVLGHLFRSNTKASSKREM 687
Query: 411 FIAATPF 417
+ TP
Sbjct: 688 LVFITPK 694
>gi|95931255|ref|ZP_01313974.1| type II and III secretion system protein [Desulfuromonas
acetoxidans DSM 684]
gi|95132691|gb|EAT14371.1| type II and III secretion system protein [Desulfuromonas
acetoxidans DSM 684]
Length = 665
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 66/350 (18%), Positives = 115/350 (32%), Gaps = 38/350 (10%)
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
NL L D L TL ++ S G + ++ +
Sbjct: 287 NLYYLENADAEELSKTLNEILSGIKKPATSSSAAAGGKGTIPAAAIQTNVTVSADKPTNA 346
Query: 171 SGRNQYANS--SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--SSSGP 226
N K ++ L+I QV ++ I E+ D + +G Q + G
Sbjct: 347 LVINATPEDYVIIKDIIKQLDIR-RKQVYVEALIMELSMDATEALGSQLQGAFEVGNEGI 405
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDR-----------------------FSFETVLHAL 263
+ G +S+ V +F ++
Sbjct: 406 VNLSSNSAPGGILSDPESLLTTSVNGLLAGGFSKLIGVDTDGDGVDDSQVTAFSALIKLS 465
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVV 315
+ T + L+ P L + A G T + SV D +
Sbjct: 466 KDDTNVNILSAPRLLTSDNEEAEIVVGRNVPIITSRLTDSTGSDSLAQSVSVERKDVALT 525
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGL 373
L FTP + + L + E ++ V + P++ RK TV G T+VL GL
Sbjct: 526 LRFTPQITEGELVRLNVYQETTDLTDSVGDVNSVGPTFTTRKISNTVLARDGQTVVLGGL 585
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
+ + Q+ +PLL IP+LG LF++ +T + + TP ++ +
Sbjct: 586 ISTNQQETISKVPLLGDIPLLGWLFKSKDNKEVKTNLLVFITPTIISDME 635
>gi|269104067|ref|ZP_06156764.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163965|gb|EEZ42461.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 565
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 64/290 (22%), Positives = 104/290 (35%), Gaps = 35/290 (12%)
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ L KK + + + QV L+ I EV + Q G S
Sbjct: 252 QASLISVRAYPNELREVKKFLGMSEQRLKRQVILEAKILEVTLNDSYQQGINWGNITRSI 311
Query: 225 GPSKSFAADF--------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
G GG +SE + +F V+ L +
Sbjct: 312 GSGGVTIGQPSVVNPVTGLINTLPGGNDISELLGGQTNITITDGNFSAVMRFLSTQGDLN 371
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSVTTHDYGVVLHFTP 320
L+ P +TA + Q A GG + T SS+ ++T G+ L TP
Sbjct: 372 VLSSPRVTAANNQKAVIKVGGDEYFVTNVSSSNVSGDNSTAAPDINLTPFFSGISLDVTP 431
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKADTTVELPSGGTIV 369
+ G + L + V + V + ++ +R++D+ + SG +V
Sbjct: 432 QIDDQGGVLLHVHPAVVDVTDEVKSIELGDKFGTYQLPLAKSSIRESDSIIHAHSGDVVV 491
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ GL+K +PLL IP LG LFRN +++TE+ I P +V
Sbjct: 492 IGGLMKTSTHDQVSKVPLLGDIPGLGNLFRNINKVQQKTELVILLKPTVV 541
>gi|254418127|ref|ZP_05031851.1| general secretion pathway protein D [Brevundimonas sp. BAL3]
gi|196184304|gb|EDX79280.1| general secretion pathway protein D [Brevundimonas sp. BAL3]
Length = 718
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 58/373 (15%), Positives = 110/373 (29%), Gaps = 48/373 (12%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
+ V + V+ L++ QV ++ +
Sbjct: 330 GAIGSSTVTATGQRATIARFPGANALVIAGPADMQRTLADVIRRLDVR-RQQVLIEAIVV 388
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------------------ 233
E+ + ++++G Q G + ++ A+
Sbjct: 389 ELSDNAVRELGVQWLYGGENGVGLTNYTANATPLVNMAGGAYAGQLDKDDPLREQLQTLA 448
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
+ G + F +++A + L P++ + + A+F G +
Sbjct: 449 LNSLVGANGFIGGAGVEVGDGLFGFIINAAKTDKGSNLLQTPSIMTLDNEEATFLVGQEV 508
Query: 294 LYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGD 347
T +S T+ D GV L P + + G I L ++ EVS G+
Sbjct: 509 PITTGQTLLDGNSNPFTTTDRKDIGVRLTVKPQINAGGSITLTLRQEVSAINGGLTRGAT 568
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
R+ TT+ + G V GLL + + IP L +P +GALFR++ R
Sbjct: 569 DLVLDKRELQTTLVVDDGDIAVAGGLLDQNDIISTDKIPGLGDLPGVGALFRSNSRQRGR 628
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDH----------YSVEDDAKAFFFNRVNKIYGPKEA 457
T + + P +V+ D + + R A
Sbjct: 629 TNLMVFLRPTIVR-TREEAQGLAADRWGYMRDQQQAVQPDREPSLDALVRDYMRTQAPAA 687
Query: 458 SEVEGQNYKGAIG 470
G
Sbjct: 688 PATGQPMVIAPTG 700
>gi|262191511|ref|ZP_06049695.1| type II secretory pathway component PulD [Vibrio cholerae CT
5369-93]
gi|262032609|gb|EEY51163.1| type II secretory pathway component PulD [Vibrio cholerae CT
5369-93]
Length = 559
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 62/263 (23%), Positives = 99/263 (37%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
QV L+ I EV Q G S SS+G S + + S SV
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPG 332
Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-- 343
T SS + + +T G+ L TP + G + L + V E
Sbjct: 393 VTDISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452
Query: 344 -----NAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
++P +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 453 ILYRSEEIELPLAKSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535
>gi|229521807|ref|ZP_04411225.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80]
gi|229341401|gb|EEO06405.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80]
Length = 674
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 67/452 (14%), Positives = 145/452 (32%), Gaps = 82/452 (18%)
Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDPTKADVVVHSPRT----MYLFGKNVGQANVILIG 103
I + + ++ ++ ++ V + + +VV + + + + +
Sbjct: 162 NIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTP 221
Query: 104 HDGKQMLNLDILIERDI----AHLEMTLRRFIADSNIRVEMVSDTVVL------------ 147
K D + + L+R I ++ + + V+
Sbjct: 222 EFLKPKFVADERTNSILISGDPKVRERLKRLIKQLDVEMATKGNNRVVYLKYAKAEDLVE 281
Query: 148 ------------HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAG 192
G + + V ++ + S V+ L+I
Sbjct: 282 VLKGVSENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLDVIGQLDIR- 340
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------- 237
QV ++ I E+ +G Q S S G
Sbjct: 341 RAQVLIEALIVEMAEGDGINLGVQWGSLDSGSVIQYGNTGASIGNVMIGLEEAKEKTVTD 400
Query: 238 ------------------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
+ + + +++A+ ++ L+
Sbjct: 401 SRWNSVTQTYEPYTRTESGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILS 460
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRI 328
P++T + ASF G + T SS +V + G+ L P + +
Sbjct: 461 SPSITVMDNGEASFIVGEEVPVITGSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSV 520
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
L+I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + +PLL
Sbjct: 521 QLKIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLL 579
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+LG LFR++ E+ + + P +++
Sbjct: 580 GDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIR 611
>gi|189424346|ref|YP_001951523.1| general secretion pathway protein D [Geobacter lovleyi SZ]
gi|189420605|gb|ACD95003.1| general secretion pathway protein D [Geobacter lovleyi SZ]
Length = 648
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 88/421 (20%), Positives = 147/421 (34%), Gaps = 52/421 (12%)
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV--------EMVSDTVV 146
G V+ +L ++DI L L +++ ++ + V
Sbjct: 230 GAVQVLADTRLNAVLLFGPEKDKKDIRSLIAQLDVTPPEASSKINVCFLENTDATEMAKV 289
Query: 147 LHGMV------RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM--------NLLNI-- 190
L G+V T + S F S +S+ V+ NLL +
Sbjct: 290 LDGVVKGITAQTTTLQAGTVSAQSSPFDSGKVTITADKASNSLVVMASPTDYNNLLQVIK 349
Query: 191 ---AGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------GSSSGPSKSFAADFGG 236
QV ++V IAE+ + +G Q G P +F + G
Sbjct: 350 KLDRRSKQVFVQVLIAEISPSKSRDLGVQSGAFAVGALGKYLQGGGIYDPFNTFGSLLGS 409
Query: 237 KFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ + L S +L ALE + L+ P + + A G
Sbjct: 410 GSSTSPLSTLIADKLKNTSKPVTGAAILQALESEGMLNILSTPNILTTDNKEAEINVGEN 469
Query: 293 HLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
+K+ S+ + SV D G+ L P V I + + E+S
Sbjct: 470 VPFKSSSTQSTFGTTESVERKDIGINLKIKPQVSEGDYIRMDLYQEISAVKSDKGDAVDL 529
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
R A T+V + TIV+ GL++D + +PLL IP LG F+ + R++T
Sbjct: 530 VTTKRSAKTSVVVKDNETIVIGGLIQDTEDNTIQKVPLLGDIPGLGWFFKTTTKTRKKTN 589
Query: 410 IFIAATPFLVKPVAMRDLSRPDDH----YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
+ I TP +VK RDL+ + ++ + N N+I G +GQ
Sbjct: 590 LLIMLTPQVVK--DARDLASITESQKGKFTEAA-KEFGPLNVQNEISGKATKPVSQGQES 646
Query: 466 K 466
+
Sbjct: 647 R 647
>gi|91225619|ref|ZP_01260693.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01]
gi|91189739|gb|EAS76013.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01]
Length = 529
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 64/304 (21%), Positives = 111/304 (36%), Gaps = 30/304 (9%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
+L V + S + + T + + ++V L + + QV L+ I
Sbjct: 202 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 261
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256
EV + Q G S +S G S S + + + +F
Sbjct: 262 LEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPPLDAIGTLLGGQTNVTISDGNF 321
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
VL + + L+ P +TA + Q + G + T SS
Sbjct: 322 NAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVE 381
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
+T G+ L TP + + G + L + V E V ++ +R+
Sbjct: 382 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSIRE 441
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+D+ + G +V+ GL+K ++L +P L +P LG LFRN E+TE+ I
Sbjct: 442 SDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVTEKTELVILLK 501
Query: 416 PFLV 419
P +V
Sbjct: 502 PTVV 505
>gi|296273826|ref|YP_003656457.1| type II and III secretion system protein [Arcobacter nitrofigilis
DSM 7299]
gi|296098000|gb|ADG93950.1| type II and III secretion system protein [Arcobacter nitrofigilis
DSM 7299]
Length = 468
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 52/261 (19%), Positives = 118/261 (45%), Gaps = 16/261 (6%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
++ KK +N ++I+ Q+ +K I E+ K++G ++ + G + S + +
Sbjct: 152 VGSKSDTEIIKKFINKIDISNP-QIYIKAKIVEISETKTKEVGLEYGLNGFNKYSSTNLS 210
Query: 232 ADFGGKFVS----------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
F + + + ++ L++ AI ++EP++ I+
Sbjct: 211 TFSSSFNSLSNTAINFSEFSTFGFDLNSLSKGLNLSATINFLKQNQAIDVISEPSILCIN 270
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
+ +S G +KT ++ + + + G+ L P +S +I L+I T + +
Sbjct: 271 NKESSIYVGETKSFKTGQTTNTSGTTESFKREEVGLRLKVKPR-ISDNKIILQINTVLED 329
Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
+ ++ ++ TT L + ++++ GL+K Q + G+P+L IPILG LF
Sbjct: 330 VKESTTSENL-DTSKKEVITTAILNNAESVIIGGLIKTKKFQTESGLPVLKDIPILGTLF 388
Query: 399 RNSRFNREETEIFIAATPFLV 419
+N ++ ++ + + TP++V
Sbjct: 389 KNEKYINDKMNLVVIITPYIV 409
>gi|119773310|ref|YP_926050.1| type II and III secretion system protein [Shewanella amazonensis
SB2B]
gi|119765810|gb|ABL98380.1| type II and III secretion system protein [Shewanella amazonensis
SB2B]
Length = 703
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 58/284 (20%), Positives = 105/284 (36%), Gaps = 48/284 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
+ V+N L+I QV ++ I EV G Q + + G
Sbjct: 340 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATESGGGTQFNNLGPTIGEIGAGI 398
Query: 236 ---------------------------------GKFVSEGGDFSVKGVLDRFSFETVLHA 262
+ G + + F ++ A
Sbjct: 399 WQARGEEASEVTTIDGNGNPIVSKNPEKRGDITLLAQALGKVNGMAWGVAMGDFGALIQA 458
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVTTHDYGVVL 316
+ T LA P++T + Q A+F G + T + S +V + GV L
Sbjct: 459 VSSDTNSNVLATPSITTLDNQEAAFIVGDEVPVLTGAQNSSNGNSNPFQTVERKEVGVKL 518
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
TP + + L I+ EVS ++ R+ TTV SG +VL GL+ +
Sbjct: 519 KVTPQINEGNAVKLAIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINE 576
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++Q+ + +P+L IP+LG LF++S +++ + + P +++
Sbjct: 577 EVQESVQKVPILGDIPLLGHLFKSSSSGKKKKNLMVFIKPTIIR 620
>gi|262377049|ref|ZP_06070275.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
gi|262308087|gb|EEY89224.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
Length = 710
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 53/291 (18%), Positives = 102/291 (35%), Gaps = 37/291 (12%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ T Q + +++LL++ + QV ++ I + K++G + I
Sbjct: 414 ARTNTLIVNDTQPFIDKIRNMVDLLDVQVK-QVMVEARIVRASTEFAKEMGVKWGILSQG 472
Query: 224 SGPSKSFAADFG---------------------------------GKFVSEGGDFSVKGV 250
+ G + G
Sbjct: 473 ITNNDHLLVGGSDTTLWDLRTPEINSTTGIPTYEIQRPDNLNVDLGVENAAGRIAFGLIS 532
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVT 308
L F + L AL+ ++ P + Q A+ SG + Y++ S +
Sbjct: 533 LSDFMLDLELSALQADGYGEVISTPKVLTADKQKATVESGVEVPYQSTEGSGANATATTE 592
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
D + L TP++ G++ + + S+ + GV + +T V + +G T+
Sbjct: 593 FKDVVLKLDVTPSITPDGKVQMSLDIS-SDSIAGVTPMGEYYLNKNRLNTNVLVENGETV 651
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
VL G+ + + + +P L IP LG LFR + + E+ I TP +V
Sbjct: 652 VLGGIFEQETLNNQTKVPFLGDIPYLGRLFRKDVKSDNKRELLIFVTPRIV 702
>gi|254225450|ref|ZP_04919061.1| general secretion pathway protein D [Vibrio cholerae V51]
gi|125622084|gb|EAZ50407.1| general secretion pathway protein D [Vibrio cholerae V51]
Length = 675
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/321 (17%), Positives = 113/321 (35%), Gaps = 50/321 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKVTIAE 204
G + + V ++ + S + +V+ L+I QV ++ I E
Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237
+ +G Q S S G
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTEKKPIRNSETGEIKY 412
Query: 238 -------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ G + + +++A+ ++ L+ P++T +
Sbjct: 413 YEETTTKGDYSKLASALSGLQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGE 472
Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
ASF G + T ++ +V + G+ L P + + L I+ EVS
Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR
Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591
Query: 400 NSRFNREETEIFIAATPFLVK 420
++ E+ + + P +++
Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612
>gi|269214941|ref|ZP_06158925.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970]
gi|269208722|gb|EEZ75177.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970]
Length = 254
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 22/246 (8%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAAD---------FGGK 237
++ I E + +G + TG G + F
Sbjct: 1 MIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEGGDGKWSAQTSINLP 60
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ S+ + + L A E + +TLA P + + + A SG + Y+
Sbjct: 61 VAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGTEIPYQD 120
Query: 298 VSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVR 354
SSS ++S T + L TP + G+I + ++ PV V + +
Sbjct: 121 TSSSGSSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPVDCTVKDETTKCIQTK 180
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+T + +GGT+++ G+ +++ +PLL IP++G LF+ + E+ I
Sbjct: 181 NLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFKTRGKSTNRRELLIFI 240
Query: 415 TPFLVK 420
TP ++
Sbjct: 241 TPRIMD 246
>gi|229512666|ref|ZP_04402135.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21]
gi|229350343|gb|EEO15294.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21]
Length = 559
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 61/263 (23%), Positives = 97/263 (36%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
QV L+ I EV Q G S SS+G S + + S SV
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPG 332
Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
T SS + + +T G+ L TP + G + L + V E
Sbjct: 393 VTDISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452
Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535
>gi|119505541|ref|ZP_01627613.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
proteobacterium HTCC2080]
gi|119458650|gb|EAW39753.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
proteobacterium HTCC2080]
Length = 723
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/368 (17%), Positives = 124/368 (33%), Gaps = 72/368 (19%)
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
+ + I I A + L ++ + +VV+ +I + A +L+E
Sbjct: 367 APLQSEFIRIRYAKASEVVNLFEAGSEEGGSLVSDRGSVVVDERTNSIIITDTATKLAEI 426
Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
+ ++ +++ QV ++ I ++ +++G +
Sbjct: 427 ---------------RDLIERVDVPIR-QVMIEARIVIASTNLDEELGIEWGGGYIGIDS 470
Query: 227 SKSFAADFGG-------------------------------------------------- 236
S G
Sbjct: 471 SNGNIYSASGSREQVVSFNQDTVAGVTPTLNYPVQGGQQQGGNQGGDGQQQQQGLGAALV 530
Query: 237 --KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
F+V + L ALE + +++P + Q A+ SG +
Sbjct: 531 DLGVSQATSGFAVGFTSNDLFLTAELSALESSGQGEVVSQPKIITGDKQLATIKSGSEIP 590
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSY 351
Y+ ++S GAT+V+ + + L TP + RI L + + V G +P+
Sbjct: 591 YQEGAAS-GATTVSFKEAVLKLEVTPNITPDDRILLDLVVNQDSLGDLVPSGTGGLIPTI 649
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+ T V + +G T+VL G+ ++D +P L IP LG LF+N+ +TE
Sbjct: 650 NTTQLTTQVLVGNGETVVLGGVFQNDEITQIRKVPFLGDIPYLGTLFKNTASKTSKTETL 709
Query: 412 IAATPFLV 419
I TP ++
Sbjct: 710 IFITPRIL 717
>gi|262163787|ref|ZP_06031527.1| S-protein secretion component D [Vibrio mimicus VM223]
gi|262027767|gb|EEY46432.1| S-protein secretion component D [Vibrio mimicus VM223]
Length = 713
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 67/280 (23%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205
+ +Q + S + ++++ LL QV ++ TIAE+
Sbjct: 421 SKSNKDMQVVTENYRVVVDSKRNSIFFTGEYADYQRLVELLRFVDKRPQQVLIQATIAEI 480
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
D +Q G IT + A F +S G F A +
Sbjct: 481 NIDDAQQFGVDFDITSGTITGGTKGLAGFDNGVLSLTGVFG--------DVTMGFRAALK 532
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFT 319
+ L+ P + A++ ++A T G Q T S G T+ D GV L
Sbjct: 533 TGKAQVLSSPRIIAMNQEAARITVGDQIQVVTGEVSGGGDDSKATTTYKYVDTGVTLDII 592
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
PT+ G + L I EVS G + R T + SG T+ + GL+K DI
Sbjct: 593 PTINQNGLVELEISQEVSNKGTGTD------INKRSLQTKLLADSGDTVFMGGLIKQDIG 646
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +PLL IP LG LF+ ++ E+ + TP+++
Sbjct: 647 ETDNRVPLLGDIPYLGNLFKYKSQTQKSVELVLLITPYVI 686
>gi|171463462|ref|YP_001797575.1| type II and III secretion system protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193000|gb|ACB43961.1| type II and III secretion system protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 509
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 45/251 (17%), Positives = 100/251 (39%), Gaps = 18/251 (7%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
K+++ L+I +V ++ I E D ++G + ++ + + G V +
Sbjct: 262 KLISKLDIRT-QEVLIEAFIVEADDDWQYELGSRFGYRNTTGNGTSTNPTSAVGGAVGDL 320
Query: 243 GDFSVKGV--------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+ ++ + L A+E+ + ++ ++ P + + + A
Sbjct: 321 ANANIFSRPVTGAPFGLGYLFQTTASQLKVELTAMEKLSLVKIISNPHVFTMDNEEAVVI 380
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
G Q Y T + D + L TP+++ G + L + P +
Sbjct: 381 DGVQIPYPVPGVGTNQITYEFKDAALKLTATPSIVGDGNLFLNMIVNKDSPNYSTSP--- 437
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
PS R+ + + + G V+ G+ + E +PLL IP+LG+LF +R ++T
Sbjct: 438 PSINKREVRSKLLIQDGTIAVIGGIYDQTKENTVEKVPLLGSIPLLGSLFSYTRKADKKT 497
Query: 409 EIFIAATPFLV 419
++ + P ++
Sbjct: 498 QLLVFIAPKIL 508
>gi|315637872|ref|ZP_07893062.1| general secretory pathway protein D [Campylobacter upsaliensis
JV21]
gi|315482113|gb|EFU72727.1| general secretory pathway protein D [Campylobacter upsaliensis
JV21]
Length = 468
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 58/255 (22%), Positives = 98/255 (38%), Gaps = 16/255 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L + QV + V+I V + G + + + S
Sbjct: 197 GEYITKLENRLKKQVIIDVSIIAVNLNENHSSGINWQNFNLDFASTTQNGQNSFIQLQSG 256
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G G+ +F +VL+ L + + L+ P L A++ Q A + G Y+ SS
Sbjct: 257 QGFVKNLGLRANINFNSVLNFLSQNGKTQVLSSPKLMALNNQQAIISVGDTINYQVKESS 316
Query: 302 TGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----- 347
G + TT G++L P + +I LRI +S+ +
Sbjct: 317 KGTENGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPR 376
Query: 348 --MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
P +K T V + + T++L GL+ + + + LSKIP+LG LF +
Sbjct: 377 TIAPDTIQKKLSTVVSMENNQTLILGGLISHNQIKEASEVNFLSKIPLLGLLFSGDETSS 436
Query: 406 EETEIFIAATPFLVK 420
TEI TP +V
Sbjct: 437 NSTEIVFIITPSIVD 451
>gi|332994893|gb|AEF04948.1| pilus (MSHA type) biogenesis protein MshL [Alteromonas sp. SN2]
Length = 557
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 23/250 (9%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKG 249
QV L+ I EV + Q G + +++G S S A G +S
Sbjct: 285 TKQVILEARILEVELNDGYQQGINWNEILANTGNTDFSLSTTAGTLGNDISATLGGVTSL 344
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------- 301
F VL L ++ L+ P +TAI+ Q A G + T SS
Sbjct: 345 AFLNKDFSGVLSLLSTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSDSTVTSTT 404
Query: 302 ---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MP 349
+ +T G+ L TP + G + L + V E +
Sbjct: 405 TSISPDIELTPFFSGIALDVTPQIDDKGTVLLHVHPSVIETAEQQKVVTMDDEQIVLPLA 464
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+R++DT + SG +V+ GL++ + PLL IP+ G LF+N + + + E
Sbjct: 465 QSTIRESDTIIRAGSGEIVVIGGLMQTSQTDVVSKTPLLGDIPLFGELFKNRQVSETKKE 524
Query: 410 IFIAATPFLV 419
+ I P +V
Sbjct: 525 LIILLKPTVV 534
>gi|325922269|ref|ZP_08184050.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
gardneri ATCC 19865]
gi|325547222|gb|EGD18295.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
gardneri ATCC 19865]
Length = 620
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 46/267 (17%), Positives = 97/267 (36%), Gaps = 33/267 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------------SS 224
DQV ++ I + +G + I G +
Sbjct: 352 RPVDQVLIESRIVIATDTFARDLGARFGIAGRRQYGDNTGVISGSTANNVSIINDGLHNV 411
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+F G S G + + F+ + L A++ ++ P + + +
Sbjct: 412 PAGLNFNLPAGTFTTSTAGSIAYTLLGRNFALDMELSAMQEEGRGEVVSNPRIVTANQRE 471
Query: 285 ASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVS 337
G + + +V + + L TPT+ + R+ L + EV+
Sbjct: 472 GVIKQGREIGYVTITAASGGGQSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 531
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
++ G +P R+ +T V + G T+V+ G+ + ++ +P L IP LG L
Sbjct: 532 RFIVLDGYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESVSKVPFLGDIPFLGNL 591
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAM 424
F+ ++E+ E+ + TP +++ +
Sbjct: 592 FKKRGRSKEKAELLVFVTPKVLRVASA 618
>gi|262190137|ref|ZP_06048422.1| general secretion pathway protein D precursor (Cholera toxin
secretion protein epsD) [Vibrio cholerae CT 5369-93]
gi|262033978|gb|EEY52433.1| general secretion pathway protein D precursor (Cholera toxin
secretion protein epsD) [Vibrio cholerae CT 5369-93]
Length = 675
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/321 (17%), Positives = 113/321 (35%), Gaps = 50/321 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKVTIAE 204
G + + V ++ + S + +V+ L+I QV ++ I E
Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237
+ +G Q S S G
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTEKKPIRNSETGEIKY 412
Query: 238 -------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ G + + +++A+ ++ L+ P++T +
Sbjct: 413 YEETTTKGDYSKLASALSGLQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGE 472
Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
ASF G + T ++ +V + G+ L P + + L I+ EVS
Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR
Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591
Query: 400 NSRFNREETEIFIAATPFLVK 420
++ E+ + + P +++
Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612
>gi|167564371|ref|ZP_02357287.1| type II/III secretion system protein [Burkholderia oklahomensis
EO147]
Length = 521
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 33/295 (11%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQV 196
+ L Q ++ + + NLL + QV
Sbjct: 227 ARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRLVQIADLIGKLDTPSRQV 286
Query: 197 TLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEGGD 244
++ I E R + +G + + +G A G F +
Sbjct: 287 LIEARIVEGDRGFSRNLGARLALRAPDAGDRATGVVAGRNGTLADLTARPIGGFDAATAG 346
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ + L ALE + ++ P + A G + Y+ G
Sbjct: 347 LTLFAARASRLLDVELSALESEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGV 405
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P + GR+ L + ++++ +G P+ + T VE+ +
Sbjct: 406 SGVQFRRATLKLEVEPQITPDGRVILDL--DIAKDSVGEETASGPAIHTKHVQTRVEVEN 463
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP +V
Sbjct: 464 GGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRALRAQRSELVVYITPTVV 518
>gi|170740267|ref|YP_001768922.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
gi|168194541|gb|ACA16488.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
Length = 779
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/245 (26%), Positives = 120/245 (48%), Gaps = 17/245 (6%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
A QV + VTIAEV+ + + G Q + S G ++ + G + G +V
Sbjct: 503 AVPAQVAVNVTIAEVKLNDELKHGVQFFLDSRSLGLGRNKGS-VGLVSAAASGASNVLKP 561
Query: 251 LDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ F+F + V++AL+ T ++ L+ P+L + Q A+ G T + +
Sbjct: 562 GNGFNFLVGGYSGPDVVINALDGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQS 621
Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
V D G++L+ P + + ++I+ E+S V G + P+ R+
Sbjct: 622 VDFANAPLINQVEFRDTGIILNVIPRIGQNDAVTMQIEQEISAVVGGSDTLT-PTISKRR 680
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+T+ + +G T++LAGL+ D Q+ ++GIP+L ++P +GALF ++ E TE+ +
Sbjct: 681 VASTISVANGQTVLLAGLISDKHQRERDGIPILGRLPQIGALFSSTNNADERTELVVFIR 740
Query: 416 PFLVK 420
P +V+
Sbjct: 741 PVVVR 745
>gi|83720708|ref|YP_443529.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|257137686|ref|ZP_05585948.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|83654533|gb|ABC38596.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
Length = 576
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 33/295 (11%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQV 196
+ L +Q ++ + + NLL + QV
Sbjct: 282 ARAADVQRLLSGSAAQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQV 341
Query: 197 TLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEGGD 244
++ I E R + +G + + +G A F +
Sbjct: 342 LIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGFDAATAG 401
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ + L ALE + ++ P + A G + Y+ G
Sbjct: 402 LTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGV 460
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P + GR+ L + +V++ +G P+ + T VE+ +
Sbjct: 461 SGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVEN 518
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP +V
Sbjct: 519 GGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 573
>gi|261209946|ref|ZP_05924246.1| MSHA biogenesis protein MshL [Vibrio sp. RC341]
gi|260841011|gb|EEX67543.1| MSHA biogenesis protein MshL [Vibrio sp. RC341]
Length = 551
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 59/263 (22%), Positives = 97/263 (36%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+ QV L+ I EV + G S S++G + + + S+
Sbjct: 265 RMQRQVILEAKILEVTLSDGYEQGINWSKAFSANGTNYQIGTGTIAQDTNGNPISSILPG 324
Query: 251 LD---------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
LD SFE VL + + L+ P +TA + Q A G Y
Sbjct: 325 LDAIGTLLGGQSNVVVSSGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 384
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
T SS + ++T G+ L TP + G + L + V E
Sbjct: 385 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDKGNVLLHVHPAVIEVEQQTKR 444
Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 445 ITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDRVAKVPFLGDVPGLGH 504
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 505 LFRNTSKQTQKTELVILLKPTVV 527
>gi|146305583|ref|YP_001186048.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp]
gi|145573784|gb|ABP83316.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp]
Length = 706
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 45/270 (16%), Positives = 93/270 (34%), Gaps = 36/270 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
+++ L+I QV ++ I E D K +G + + + S G
Sbjct: 429 RIVAQLDIPVR-QVMIEARIVEANVDYDKALGVRWGGSVRNGAWDVSGKDGVQGFDKDTG 487
Query: 237 ----------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
+ ++ + + L A+E+
Sbjct: 488 VRAPFVGTDTIGRTTLEDGLARLPFVDMGVQNSTSGIAIGYLGSNIVLDLQLSAMEKTGN 547
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+++P + ++A G + Y+ SSS ++ + + + L TP + RI
Sbjct: 548 GEIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALALEVTPQITPDNRI 606
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ ++ P +P + + V + G TIV+ G+ + E +P L
Sbjct: 607 IMEVKVTKDAPDFANLVNGVPPLNKNEVNAKVLVNDGETIVIGGVFSNTQTNAVEKVPFL 666
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFL 418
+P LG +FR + E+ + TP +
Sbjct: 667 GDLPFLGRVFRRDIVRDNKAELLVFITPRI 696
>gi|297570248|ref|YP_003691592.1| type II and III secretion system protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296926163|gb|ADH86973.1| type II and III secretion system protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 532
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 59/310 (19%), Positives = 110/310 (35%), Gaps = 27/310 (8%)
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------ 186
D ++ T +G V T + + ++ + ++N
Sbjct: 227 DETVQTTPAPGT---NGEVTTTRRRD-VKGAKGYYAIDKPIGLITVNAPRPLVNKIEEYL 282
Query: 187 -LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-SEGGD 244
L Q++++ I EV D + G S + G + G
Sbjct: 283 DNLKSRLFRQISIEAKIVEVNLDEQHKSGIDWRGVLSGKHLNFELFGPEGIIYPWDAAGG 342
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ + F+ +L A+E A LA P ++ ++GQ A T G Y + +T
Sbjct: 343 GVTQATIGPNPFQVLLDAIETQGAADVLANPKISVMNGQPALITVGETFRYISQVETTTD 402
Query: 305 T--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------GVNAGDMP 349
T + T G+ L PT+ I L + S +P
Sbjct: 403 TGGGISTSVTTDTVMSGLGLAVLPTITDQNEIVLSLTPVTSSLTQPMQERTFQGMTVQLP 462
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+R+ ++ V++ G T+++ GL+ + +P+L IPILG LF + + E
Sbjct: 463 QINIRELNSVVKVRDGDTLMIGGLIDNVQDSTSHRVPILGNIPILGKLFSHETKTSRKRE 522
Query: 410 IFIAATPFLV 419
+ I P ++
Sbjct: 523 LVILLQPTII 532
>gi|119503108|ref|ZP_01625193.1| general secretory pathway protein D precursor [marine gamma
proteobacterium HTCC2080]
gi|119461454|gb|EAW42544.1| general secretory pathway protein D precursor [marine gamma
proteobacterium HTCC2080]
Length = 743
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 52/237 (21%), Positives = 101/237 (42%), Gaps = 13/237 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVL 251
QV ++ +I EV + + G + + G S G+F G + V +L
Sbjct: 481 PTQVLIEASIVEVSLNDQLKYGLEWTFNNQIGGSDYSGIGAISDGEFNVAGAEGPVAQLL 540
Query: 252 DRF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSS 300
+ VL+AL + + ++ P++ + A+ G Q +
Sbjct: 541 KGQLCSFKWCDYVAVLNALATESLVNVISTPSVMVLDNNVATINVGDQVPINSGSTITNG 600
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+++ D GV L P+V + G + L + V++ V ++ + R ++ V
Sbjct: 601 GNTIQNISYKDTGVQLTVRPSVNAGGLVTLDVLQTVTD-VGNIDVTGNRRFLERSIESRV 659
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
+ SG ++VL GL++++ + G+P K PI+G LF + R+ TE+ + TP
Sbjct: 660 AVRSGESVVLGGLIRENAANNENGVPWFYKAPIIGPLFGTTEKKRDRTELLVIITPR 716
>gi|83648610|ref|YP_437045.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC
2396]
gi|83636653|gb|ABC32620.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC
2396]
Length = 720
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 58/272 (21%), Positives = 98/272 (36%), Gaps = 50/272 (18%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI----------------------------------- 219
QV ++ I R D ++++G Q
Sbjct: 445 QVLIEARIVRARSDAVEELGVQWGGTRVAGNDDSGQILIGGGMESNIEASNEIARFNTEL 504
Query: 220 ------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
G + S A G + ++ + L A E
Sbjct: 505 LNNRNSGDTTIPDGPTLATFPSALAVDLGVTRANTSGLAIGFSKGSTLLQMELSAFESDG 564
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
+A+P + Q+A SG + Y+ SS+GATSV+ + L TP + +
Sbjct: 565 KGEIVAQPKIVTADRQTARIESGEEIPYQEA-SSSGATSVSFKKAVLSLEVTPQITPDDK 623
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I + + +++ GV ++PS + +T V + +G TIVL G+ + P
Sbjct: 624 IIMDLV--INQDSRGVVTANIPSIDTNEIETQVLVGNGETIVLGGIFTSEQSSTVTKTPF 681
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L IP LG LFR + E +E+ + TP L+
Sbjct: 682 LGDIPYLGRLFRKTENVNERSELLVFITPKLI 713
>gi|109899541|ref|YP_662796.1| type II and III secretion system protein [Pseudoalteromonas
atlantica T6c]
gi|109701822|gb|ABG41742.1| type II and III secretion system protein [Pseudoalteromonas
atlantica T6c]
Length = 711
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 12/242 (4%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
V ++V +AEV+ + + G + S + + G + G + ++
Sbjct: 452 VMVEVILAEVQLNDSEDTGVEWLANSSLGRFGITSSTIGGLGLGASGFNMTLD---SAGQ 508
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVT 308
+L+ + + P L SG AS G + T +S + +++
Sbjct: 509 TRAMLNLFYKNEKANIRSRPRLMVKSGGEASIDVGNEIPVITSNSQSTTDSDAVVLQTIS 568
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGT 367
GV+L PTV + G + + I E+SE ++ D P+ RK TTV L GG+
Sbjct: 569 YRKTGVLLEVKPTVHASGFVDIEITQELSEATETSSSDIDSPTILNRKISTTVTLRDGGS 628
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRD 426
++L GL+ +G+P+L ++P++G LF ++ TE+ I P+++ P
Sbjct: 629 VLLGGLISSTTSTGTQGVPILGRLPMIGKLFSTDSNAQDRTELMIMIIPYILNSPDEAEQ 688
Query: 427 LS 428
L+
Sbjct: 689 LT 690
>gi|264676762|ref|YP_003276668.1| general secretion pathway protein D [Comamonas testosteroni CNB-2]
gi|262207274|gb|ACY31372.1| general secretion pathway protein D [Comamonas testosteroni CNB-2]
Length = 793
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 66/327 (20%), Positives = 114/327 (34%), Gaps = 43/327 (13%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G + T + V++ L+ QV ++ I EV D
Sbjct: 387 GTAQQPSTGGMIQADPTTNSLIITAPGPLYRQLRTVIDKLD-GRRAQVLIEALIVEVSAD 445
Query: 209 ILKQIGFQHS--------------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
Q+G Q S + G S + G +++ ++
Sbjct: 446 KAAQLGVQWSSVIRNNGRVLGVLGNGTSISGISNIFGLSGAVGNLVNGTPLTDSQASAIG 505
Query: 249 G-----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
G V S +++ ++ L+ P L + + AS G + T
Sbjct: 506 GMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTNILSTPNLMTLDNEEASIMVGENVPFPT 565
Query: 298 VSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
S + T+ D G +L P + G I + + E S G NA
Sbjct: 566 GSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQINENGTIKMAVYQENSAVKQGTANAQS 625
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ R ++ V + G +VL GL+ D+ Q +E +PLL IP+LG LFRN+ R++
Sbjct: 626 GATTTKRSIESNVLVEDGAIVVLGGLIADEYSQSQERVPLLGDIPLLGNLFRNTSRERKK 685
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHY 434
T + + P +++ D Y
Sbjct: 686 TNLMVFLRPTVLRDANSTS-QLSQDRY 711
>gi|323494823|ref|ZP_08099920.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546]
gi|323310931|gb|EGA64098.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546]
Length = 389
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/260 (21%), Positives = 113/260 (43%), Gaps = 22/260 (8%)
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------- 232
+ K+++ L++A + QV ++ I V L+++G + + +++ ++
Sbjct: 130 AVKQIVRSLDVAVK-QVQIEARIVTVDEGQLEELGVRWGLNQNNNSRNRIAGGIEVNNLD 188
Query: 233 -----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ F + + + L A++ ++ P L +
Sbjct: 189 QSSLDDRLNVNLGATSVNAASVAFRLATLGSDVLLDLELSAMQTEAKAEVISRPKLMTTN 248
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-- 339
Q+A G + Y SS GA+SV + L TP +LS R+ L + P
Sbjct: 249 KQAAYIEQGSEIPY-FESSENGASSVAFKKAVLSLKVTPQILSDDRLILDLSVTQDRPGN 307
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
V+ +G+ + ++ DT V + +G T+VL G+ + + + +PL +P++G+LFR
Sbjct: 308 VVKTGSGEAVAINTQRIDTQVLVNNGQTVVLGGIYQHSVTDAVDKVPLFGDLPLIGSLFR 367
Query: 400 NSRFNREETEIFIAATPFLV 419
S N ++E+ I TP +V
Sbjct: 368 RSYQNIAKSELLIFVTPTIV 387
>gi|312795821|ref|YP_004028743.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica
HKI 454]
gi|312167596|emb|CBW74599.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica
HKI 454]
Length = 655
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 60/364 (16%), Positives = 122/364 (33%), Gaps = 35/364 (9%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
R E V + G R + A S T + ++ ++ QV
Sbjct: 251 RAEDVRTMICASGSQRLLSSRGAANADSRTNQLFVTDVPGRLADIASLIQAID-RPTRQV 309
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------ADFG 235
++ I E + +G + ++ G S + + A
Sbjct: 310 LIEARIVEADDGFSRALGARVAMLKRDGGDSPTSSGEMASQGNTGAGLRGPMVDLLAAPL 369
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
F + + L+ALE R ++ P + A G + Y
Sbjct: 370 SGFAPASAGIGLLSASVSRLLDIELNALEMQGRGRVVSSPRVITADRFKAVVEQGAEVPY 429
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
+T + ++V + L P + G + L + ++ + +G P+ ++
Sbjct: 430 QT--RTQRGSAVQFRRATLKLEVEPRITPRGHVILDL--DIVKDSVGSETLHGPAIHTKR 485
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T+VE+ +GGT+ + G+ D +Q + +P+L IP++GALFR+ + +E+ I T
Sbjct: 486 VQTSVEVENGGTVAIGGIYSQDDRQDEARVPILGDIPLIGALFRHRIRSDRHSELIILIT 545
Query: 416 PFLV---KPVAMRD------LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
P +V + A + P + + + + +
Sbjct: 546 PTVVTGLQATAPGARHQDLGGATPRPGGAEAGQRRLAEADPLQSAEVDPLQGAEADPSRG 605
Query: 467 GAIG 470
G
Sbjct: 606 ADAG 609
>gi|89093859|ref|ZP_01166805.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92]
gi|89081989|gb|EAR61215.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92]
Length = 524
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 63/245 (25%), Positives = 99/245 (40%), Gaps = 20/245 (8%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV ++ I EV + Q G SI G SG + +F G + K L
Sbjct: 254 RQVVIEAKILEVTLNNGFQAGVNWSILGEPGSGNTANFTQSSVGLTNQDAIGGIFKADLS 313
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------- 302
F V+ L ++ L+ P ++ ++ Q A G + T +T
Sbjct: 314 IGDFSAVIELLGSQGDVQVLSSPRVSTVNNQKAVIKVGTDEFFVTEVENTTTTGTSTTTS 373
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PVIGVNAGDMPS--YRV 353
+ +T G+ L TP + + G I L I VSE +G + ++P +
Sbjct: 374 PSIELTPFFSGIALDVTPQISANGDIVLHIHPTVSEVVDQQKQISVGTDDFNIPLALSSI 433
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R++D+ V SG IV+ GL+K + P L IP +G LF+ R +TE+ I
Sbjct: 434 RESDSIVRAESGQVIVIGGLMKSSDSDTQAKTPGLGDIPGVGNLFKQKRQAGSKTELVIM 493
Query: 414 ATPFL 418
P L
Sbjct: 494 LRPVL 498
>gi|261253997|ref|ZP_05946570.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891]
gi|260937388|gb|EEX93377.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891]
Length = 552
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 66/318 (20%), Positives = 118/318 (37%), Gaps = 42/318 (13%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELS-ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
++E+ ++ G +++ + +A ++ + + + S++ Q
Sbjct: 218 QLEVAVSQLIGSGNGQSVVVTPQASVITIRAYPDEIREVRSFLGISQQ-------RMHRQ 270
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVS 240
V L+ I EV Q G S SS+G + + G +
Sbjct: 271 VILEAKILEVTLSDGYQQGINWSKAFSSNGTNYTIGQGSIVKDASGSIIPAALPGLDAIG 330
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
V+ SFE VL + + L+ P +TA + Q A G Y T S
Sbjct: 331 TLLGGQSNLVISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLS 390
Query: 301 S----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------GV 343
S + +T G+ L TP + G + L + V + G
Sbjct: 391 SVVGSGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEIGYGN 450
Query: 344 NAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ +P +R++D+ + G +V+ GL+K + +P L IP LG LFRN+
Sbjct: 451 TSITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDIPALGHLFRNT 510
Query: 402 RFNREETEIFIAATPFLV 419
++TE+ I P +V
Sbjct: 511 TKLTQKTELVILLKPSVV 528
>gi|163783780|ref|ZP_02178765.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1]
gi|159880969|gb|EDP74488.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1]
Length = 550
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 18/243 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFV----- 239
QV ++ I EVR+++++++G S S G + G
Sbjct: 308 PPQVKIEARILEVRKEVVRELGINWSALLSNAKVQQSWSGGAGVNLGVGQAGAITPSLSA 367
Query: 240 SEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297
+ GG + + L A ER I++LA+PT+ I+GQ+A G + Y+T
Sbjct: 368 TPGGILTFTYAKGALNALNLRLSAFERLGKIKSLAKPTIVTINGQNAVIKQGQEIPYQTA 427
Query: 298 -VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
++ + S+ + + L+ P + GRI L + E+ + + GV P+ ++
Sbjct: 428 VIAGGSSVPSIQFKEAVLELNVLPIISPDGRILLDM--ELKQEIPGVQTPIGPTIIKKQV 485
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T V + +G TIV+ G++ + KEG+ L ++PIL LF + ++ E+ I TP
Sbjct: 486 STKVIVNNGDTIVIGGIIDSLNRNTKEGVAGLVRVPILKWLFGQESKHIQDIELLIFITP 545
Query: 417 FLV 419
++
Sbjct: 546 SII 548
>gi|170723341|ref|YP_001751029.1| general secretion pathway protein D [Pseudomonas putida W619]
gi|169761344|gb|ACA74660.1| general secretion pathway protein D [Pseudomonas putida W619]
Length = 650
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 63/342 (18%), Positives = 115/342 (33%), Gaps = 38/342 (11%)
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
+ L + + LR + + E + G + A +
Sbjct: 267 TQVIYLRHANAGEVVKVLRGLSQEGGVPSEGAGE-----GEAKDKPVMAAASDSGIRLEY 321
Query: 170 QSGRNQYANSSSKK-------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
+ G N ++ L+I QV ++ IAEV +++G Q
Sbjct: 322 EEGTNAVVMVGPDSELAAYRSIVEQLDIR-RAQVVVEAIIAEVSDSRAQELGVQWLFADE 380
Query: 223 SSGPSKSFAADFGGK--------------------FVSEGGDFSVKGVLDRFSFETVLHA 262
G G + G + F+F +++A
Sbjct: 381 KFGAGIVNFGSNGVNIANIAGAAASGDNEALGDLLSATTGVTAGIGHFGGGFNFAMLINA 440
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHF 318
L+ + L+ PTL + AS G + + T S + ++ + GV L
Sbjct: 441 LKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRI 500
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
P + + L I EVS A D+ R+ T V + G ++L GL+ D++
Sbjct: 501 KPQINIDNSVRLDIVQEVSSIADSSAASDV-ITNKREIKTKVMVEDNGLVILGGLISDEL 559
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ +P L IP LG LFR+ + + + P +++
Sbjct: 560 STSDQRVPFLGDIPGLGRLFRSEASKNTKQNLMVFIRPRILR 601
>gi|309389127|gb|ADO77007.1| type II and III secretion system protein [Halanaerobium praevalens
DSM 2228]
Length = 629
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 65/328 (19%), Positives = 125/328 (38%), Gaps = 43/328 (13%)
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
+ + D + + +F + + V ++++G
Sbjct: 247 YDQSLEPETRNIRVDYVDTEQISEIVGKFYPEIKLHVNAKRKEIIING------------ 294
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
+ ++++N +N QV ++ + E+ D +++G H
Sbjct: 295 ------------AKNKLDGVEELINEINKPQY-QVVIETRVEEISSDFSRELGIDH---- 337
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ + + + S K +S+ V AL+ +T +TLA P L ++
Sbjct: 338 -----TDGGIFNIIKESTNNADGESYKIEKLDYSWPDVFKALDTSTDTKTLASPKLMTLN 392
Query: 282 GQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS- 337
G+ A+ + + YK V++ + TS + GV L FTP + I L I VS
Sbjct: 393 GEEANLSILEEKPYKVVNTDSNGEKTTSWEYAEAGVELTFTPWISKNNEIELEIAPTVSS 452
Query: 338 -----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ G P+ + R +TT+ L T + GL++ D + IPLL +P
Sbjct: 453 FSEIADSQTGEGESPPPAKKSRSVETTLRLKDNETFAVGGLIQTDKEGKITKIPLLGDLP 512
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
+ G LF+ + E+ I TP ++K
Sbjct: 513 LFGELFKFREPSDSTNELIIFVTPHIIK 540
>gi|296123515|ref|YP_003631293.1| type II and III secretion system protein [Planctomyces limnophilus
DSM 3776]
gi|296015855|gb|ADG69094.1| type II and III secretion system protein [Planctomyces limnophilus
DSM 3776]
Length = 915
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 69/340 (20%), Positives = 131/340 (38%), Gaps = 22/340 (6%)
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
K + + ++ L+ ++ + + +V + S + V G+ D+ L
Sbjct: 429 ASRKVLTKIYQPNYINVKELQQLVQPILTPTLGKVSITSPSSV--GIAENATDAG-GDSL 485
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS- 222
S+ + + +V+ ++I QV + I V+ G ++ G
Sbjct: 486 SQRDALLVQDYEEVINEIDRVIIEMDIP-PLQVIIDAKILSVKLTDDMAFGVNLALLGGD 544
Query: 223 ------SSGPSKSFAADFGGKFVS--------EGGDFSVKGVLDRFSFETVLHALERATA 268
+G S + ++ F G S +K + ALE
Sbjct: 545 KNLAVTGNGASIATSSGFPGGTGSIIPPGAQFLANTAGLKYGFIAGDITGFIRALESIAD 604
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P + A++ Q A G + YKT +S+ +V + G L P + G
Sbjct: 605 TSLVASPQIRALNKQRAEMIIGNRLSYKTLAFNSTQTIENVNFLESGTKLIIRPFIAPDG 664
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
+ + + E S VI + +P + T V + G T+V+ GL+ ++ + + +P
Sbjct: 665 LVRMEVHPERSRAVINQST-GLPDQDTTEVTTNVMVRDGQTVVIGGLISEESTESIDRVP 723
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+L IP++GA FRN E TE+ + TP +V A
Sbjct: 724 VLGAIPLVGAAFRNKSSRIERTELIVLITPRIVDEFAAAA 763
>gi|170694279|ref|ZP_02885433.1| general secretion pathway protein D [Burkholderia graminis C4D1M]
gi|170140702|gb|EDT08876.1| general secretion pathway protein D [Burkholderia graminis C4D1M]
Length = 781
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 58/275 (21%), Positives = 101/275 (36%), Gaps = 40/275 (14%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
V++ L+ QV ++ I E+ + +G Q + +S + A ++
Sbjct: 400 VIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQVANNSIFAGTNLATGSSNSIINLTA 458
Query: 244 DFS---------------------------VKGVLDRFSFETVLHALERATAIRTLAEPT 276
+ + + +L AL + L+ P
Sbjct: 459 AAAAAGAAGATGGLANALGSGVQQGLNVGWIHNMFGVQGLGALLQALSQTADANVLSTPN 518
Query: 277 LTAISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRI 328
L + + A G +T S S + D G+ LH P + G +
Sbjct: 519 LITLDNEEAKIVVGTNIPIQTGSYSNLTSGNASSAFNTYDRVDVGLTLHVKPQITDGGIL 578
Query: 329 GLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
L++ TE S V G P + R +TV +G IVL GL++D+ Q
Sbjct: 579 KLQLYTEDSAIVNGTTNATTNPAGPQFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSK 638
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+PLL IP +G LFR+ + NR +T + + P ++
Sbjct: 639 VPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVII 673
>gi|319761560|ref|YP_004125497.1| type iv pilus secretin pilq [Alicycliphilus denitrificans BC]
gi|330823429|ref|YP_004386732.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601]
gi|317116121|gb|ADU98609.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans BC]
gi|329308801|gb|AEB83216.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601]
Length = 713
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 57/302 (18%), Positives = 109/302 (36%), Gaps = 42/302 (13%)
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE-DQVTLKVTIAEVRRDILKQIGF 215
S+R ++E +Q + LL + QV ++ I E R + +G
Sbjct: 408 SERGSAIAEPRTNQLFVTDTPAKLEEVRKLLLTLDVPVRQVMIEARIVEARDTFGRSLGV 467
Query: 216 Q-------------------------HSITGSSSGPSKSFA--ADFGGKFVSEGGDFSVK 248
+ S++ S F + GG FV+ S
Sbjct: 468 RLGGGDLRANRGGDGGYSIGGGNRAAWGTNYSNATNSAGFGDAVNVGGNFVNLPASLSNV 527
Query: 249 GVLDRFSFE-----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ F+ L A+E + ++ P L A G ++ Y
Sbjct: 528 TGVGSFALSIFNSAANRFLTLELSAMEADGQGKVVSSPRLITADQTKALIEQGTEYPYSV 587
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
+ GAT++ + L P + G I L +V++ G + + +
Sbjct: 588 TAP-NGATTIAFKKAVLKLEVVPQITPEGNIILD--LDVNKDSRGESTTQGVAIDTKHIK 644
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T V + +GGT+V+ G+ + + + IPLL +P++G LF++ + E+ + TP
Sbjct: 645 TQVLVENGGTVVIGGIFELEETNQENKIPLLGDVPVMGNLFKSRTKESSKREMLVFITPK 704
Query: 418 LV 419
++
Sbjct: 705 VI 706
>gi|167736415|ref|ZP_02409189.1| general secretion pathway protein D [Burkholderia pseudomallei 14]
gi|167813490|ref|ZP_02445170.1| general secretion pathway protein D [Burkholderia pseudomallei 91]
gi|167892116|ref|ZP_02479518.1| general secretion pathway protein D [Burkholderia pseudomallei
7894]
Length = 742
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + + + V++ L+ QV ++ + E++ +G Q +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423
Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
+G S G + GG G +
Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
+L ++ L+ P L + + A G T S S + T
Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543
Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
D G+ LH P + G + L++ TE S V G N P++ R +TV
Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659
>gi|260550835|ref|ZP_05825042.1| type II secretory pathway [Acinetobacter sp. RUH2624]
gi|260406145|gb|EEW99630.1| type II secretory pathway [Acinetobacter sp. RUH2624]
Length = 721
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/272 (18%), Positives = 99/272 (36%), Gaps = 37/272 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
K+++LL++ + QV ++ I K++G + I +K+
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVGGSETTLWNL 502
Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
G G + F + L AL+
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
++ P + Q+A +G Q Y+T ++S + + D + L+ TP++ G+
Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQTTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I +++ G +T V + +G T++L G+ + + +P
Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTTNSQTKVPF 681
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFR + ++ E+ I TP +V
Sbjct: 682 FGDIPVVGHLFRKDVKSDDKQELLIFVTPRIV 713
>gi|327483259|gb|AEA77666.1| MSHA biogenesis protein MshL [Vibrio cholerae LMA3894-4]
Length = 559
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 58/263 (22%), Positives = 95/263 (36%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235
QV L+ I EV Q G S SS+G + + G
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPG 332
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
T SS + ++T G+ L TP + G + L + V E
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452
Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535
>gi|167571519|ref|ZP_02364393.1| type II/III secretion system protein [Burkholderia oklahomensis
C6786]
Length = 555
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 33/295 (11%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQV 196
+ L Q ++ + + NLL + QV
Sbjct: 261 ARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRLVQVADLIGKLDTPSRQV 320
Query: 197 TLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEGGD 244
++ I E R + +G + + +G A G F +
Sbjct: 321 LIEARIVEGDRGFSRNLGARLALRAPDAGDRATGVVAGRNGTLADLTARPIGGFDAATAG 380
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ + L ALE + ++ P + A G + Y+ G
Sbjct: 381 LTLFAARASRLLDVELSALESEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGV 439
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P + GR+ L + ++++ +G P+ + T VE+ +
Sbjct: 440 SGVQFRRATLKLEVEPQITPDGRVILDL--DIAKDSVGEETASGPAIHTKHVQTRVEVEN 497
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP +V
Sbjct: 498 GGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRALRAQRSELVVYITPTVV 552
>gi|330958318|gb|EGH58578.1| general secretion pathway protein D [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 784
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 61/292 (20%), Positives = 106/292 (36%), Gaps = 26/292 (8%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ T + + ++V++ L+ QV ++ I EV D Q G Q
Sbjct: 432 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDASQFGVQWQ 490
Query: 219 ITGSSSGPSKSFAADF-----------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261
S G G ++ G+ + + +
Sbjct: 491 TGNLSGNGGFGGVNLGGSGLNSNGGTSIDVLPQGLNVGVVRGAVTIPGIGEVLDLKVLAR 550
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
AL+ L+ P L + ++AS G + T +S+ +V + G
Sbjct: 551 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 610
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ L+ P + G + L I EVS + R DT++ L G +VL GL
Sbjct: 611 LKLNVRPQISEGGTVKLDIYQEVSSVDQRASLEAGTVTNKRAIDTSILLDDGQIMVLGGL 670
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
L+D Q +P LS IP+LG LFRN + +T + + P++++
Sbjct: 671 LQDGYNQSNNAVPWLSNIPLLGVLFRNEARSTSKTNLMVFLRPYIIRDSGAG 722
>gi|296157578|ref|ZP_06840413.1| general secretion pathway protein D [Burkholderia sp. Ch1-1]
gi|295892350|gb|EFG72133.1| general secretion pathway protein D [Burkholderia sp. Ch1-1]
Length = 789
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 42/309 (13%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
Q + T + + + V++ L+ QV L+ I E+ +
Sbjct: 364 DDNQAGGMIQADAATNSLIVTAAEPVYRNLRAVIDQLDAR-RAQVYLEALIVELNSNTSG 422
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------------------------- 246
+G Q + +S + V+
Sbjct: 423 NLGIQWQVANNSIFAGTNLQTGSSNSIVNLTAGAVAAGAAGAATGGLASAIGTQGLQQGL 482
Query: 247 ----VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ + +L AL + L+ P L + + A G +T S S
Sbjct: 483 NIGWIHNIFGVQGLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSN 542
Query: 303 --------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PS 350
+ D G+ LH P + G + L++ TE S V G P
Sbjct: 543 LTSSTATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTTNATTNPAGPE 602
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ R +TV +G IVL GL++D+ Q +PLL IP +G LFR+ + R +T +
Sbjct: 603 FTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNL 662
Query: 411 FIAATPFLV 419
+ P ++
Sbjct: 663 MVFLRPVII 671
>gi|148254077|ref|YP_001238662.1| putative general secretion pathway protein D [Bradyrhizobium sp.
BTAi1]
gi|146406250|gb|ABQ34756.1| Putative general secretion pathway protein D [Bradyrhizobium sp.
BTAi1]
Length = 780
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 66/297 (22%), Positives = 116/297 (39%), Gaps = 32/297 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+ QV + TIAEV + G Q +T + G + S +
Sbjct: 492 RPQLQVAIDATIAEVTLNDNLNYGVQAYLTSKNLGLRPDQGSLLNTTSTSAPATVASAAG 551
Query: 251 LDRFSF------------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+F +L AL T ++ L+ P+L I Q+A+ G Q
Sbjct: 552 TITNAFLNRAFPGFNFLIGSESQPSAILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQ 611
Query: 293 HLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
T S++ T ++ + G++L P V G + L I+ E+S
Sbjct: 612 VPVSTGSATVLTTNNTVVNTIDYRNTGIILRVAPRVNENGNVRLEIEQEISNVSPQTANS 671
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
P+ RK + V + SG T++LAGL+ + Q + G+P + +IP+LG LF N+ R
Sbjct: 672 LTPTVAQRKVKSAVAVASGQTVLLAGLISETHQGTRNGVPGVDQIPVLGDLFSNNDRTRG 731
Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
TE+ I P +++ D + V ++ ++ + + G+
Sbjct: 732 RTELIIFIRPQIIRDG--------TDAHYVAEELRSKLRGTIRPVSTSALQPPRAGR 780
>gi|167032058|ref|YP_001667289.1| general secretion pathway protein D [Pseudomonas putida GB-1]
gi|166858546|gb|ABY96953.1| general secretion pathway protein D [Pseudomonas putida GB-1]
Length = 584
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 26/295 (8%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
MV + S R T ++ + ++ L+I QV ++ IAEV
Sbjct: 243 MVASAGPSIRLEYEEGTNAVVMVGPDSELAAYRAIVEQLDIR-RAQVVVEAIIAEVSDSS 301
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVKG 249
+++G Q G G + G +
Sbjct: 302 AQELGVQWLFADEKFGAGIVNFGSNGVNIANIAGAAASGDNEALGDLLSTTAGATAGIGH 361
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
F+F +++AL+ + L+ PTL + AS G + + T S +
Sbjct: 362 FGGGFNFAMLVNALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQ 421
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
++ + GV L P + + L I EVS A D+ R+ T V +
Sbjct: 422 TIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIADSSAASDV-ITNKREIKTKVMVEDN 480
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G ++L GL+ D++ + +PLL IP LG LFR+ + + + P +++
Sbjct: 481 GLVILGGLISDELSTSNQRVPLLGDIPYLGRLFRSDASKNTKQNLMVFIRPRILR 535
>gi|120609611|ref|YP_969289.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
gi|120588075|gb|ABM31515.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
Length = 810
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 55/277 (19%), Positives = 98/277 (35%), Gaps = 41/277 (14%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-- 248
QV ++ I EV + + G Q + G ++
Sbjct: 441 GRRAQVLVESLIVEVAANKVADFGIQWQGVMGNYGNGTIGVIGTNSTASGGANILNLALA 500
Query: 249 ------------------------------GVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ + + + LE L+ P L
Sbjct: 501 AASGSVSGVTSALSASGARPGNGLNVAIAPRINGNYYLGALANFLENTGDANVLSTPNLL 560
Query: 279 AISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + A G + T S + T+V D G++L P + G + L
Sbjct: 561 TLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVGLMLRVRPQISENGTVKL 620
Query: 331 RIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ EVS+ NA + P+ R ++TV + G IVL GLL+D ++ +PL+
Sbjct: 621 SLYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGSVIVLGGLLEDRYSMGQDKVPLMG 680
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+P++G LFRN R++T + + P +++ A D
Sbjct: 681 DLPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSD 717
>gi|167843644|ref|ZP_02469152.1| general secretion pathway protein D [Burkholderia pseudomallei
B7210]
Length = 743
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + + + V++ L+ QV ++ + E++ +G Q +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423
Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
+G S G + GG G +
Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
+L ++ L+ P L + + A G T S S + T
Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543
Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
D G+ LH P + G + L++ TE S V G N P++ R +TV
Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659
>gi|332527680|ref|ZP_08403723.1| general secretion pathway protein D [Rubrivivax benzoatilyticus
JA2]
gi|332112080|gb|EGJ12056.1| general secretion pathway protein D [Rubrivivax benzoatilyticus
JA2]
Length = 388
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/277 (21%), Positives = 100/277 (36%), Gaps = 35/277 (12%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------------PSKSF 230
QV ++ I EV D + GFQ G +
Sbjct: 51 RRAQVYIESLIVEVAGDNAAEFGFQWQGLIGKDGDKTGLFGGTNFSNNNGSGNILNITTA 110
Query: 231 AADFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
AA VS G +V + ++ + + L+ T ++ P L + + A
Sbjct: 111 AASGSASGVSLGEGLNVGILRRYGGTYALGALANLLQSQTKTNIVSTPNLITLDNEEAKI 170
Query: 288 TSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
G + T + T ++ D G+ L P + G + + I E S +
Sbjct: 171 VVGENVPFITGQYTNTGTATTSPFQTIERKDVGITLRIRPQIGESGTVRMTIYQEQSSVL 230
Query: 341 IGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
G PS R ++ V + G IVL GL++D + K +PLL IP LGAL
Sbjct: 231 STATVGTTNAGPSTTKRSIESQVVVEDGQIIVLGGLVQDSYVEEKSKVPLLGDIPGLGAL 290
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
FR+ ++ T + + P +++ + D Y
Sbjct: 291 FRSESRTKKRTNLMVFLRPVVMRDAD-STVRLSLDRY 326
>gi|303231123|ref|ZP_07317863.1| bacterial type II and III secretion system protein [Veillonella
atypica ACS-049-V-Sch6]
gi|302514254|gb|EFL56256.1| bacterial type II and III secretion system protein [Veillonella
atypica ACS-049-V-Sch6]
Length = 399
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 73/326 (22%), Positives = 127/326 (38%), Gaps = 36/326 (11%)
Query: 99 VILIGHDGKQMLNLDILIERDIAH---LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
V + G G + +++E +A LE ++ + + V ++ +VL
Sbjct: 105 VTVKGDSGTKEHRHVVVVEPKVASSTSLESVIKTVVPNGKFAVHKETNQIVL-------- 156
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
++ ++ QV L+ TI + K+ GF
Sbjct: 157 ----------------NVTGDEEKGVNSIIQSVD-RDMKQVRLEATIMAMEHSYTKETGF 199
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ S D + + + +F + L LE + +A P
Sbjct: 200 RWS-----WLSLTGHGNDKTNSYGAITFGKAPDREAYKFFVKPELSLLETSGKAVVIATP 254
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
++ A++G++A G + S S G + + G+ L +TP V G I I+
Sbjct: 255 SIVALNGEAAHILIGERIPVIEESISNGERKRSIHYEEVGIKLDYTPIVTKNGAIDTSIR 314
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
EVS P I V+ R+A T V L G +V+ GL+ + Q+ E IP+L IP+
Sbjct: 315 AEVSSP-IMVSELKSYKITTRQAQTRVRLQPGEVLVIGGLMDNRDQKQIEKIPVLGDIPL 373
Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
LG LFR+SR ++ E+ I +V
Sbjct: 374 LGKLFRHSRKTKDSVEMVIFVKATVV 399
>gi|15640429|ref|NP_230056.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121587598|ref|ZP_01677363.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80]
gi|121727263|ref|ZP_01680422.1| MSHA biogenesis protein MshL [Vibrio cholerae V52]
gi|147674773|ref|YP_001218670.1| MSHA biogenesis protein MshL [Vibrio cholerae O395]
gi|153802215|ref|ZP_01956801.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3]
gi|153818263|ref|ZP_01970930.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457]
gi|153822274|ref|ZP_01974941.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
gi|227080613|ref|YP_002809164.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2]
gi|229507042|ref|ZP_04396548.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286]
gi|229508803|ref|ZP_04398295.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
gi|229519791|ref|ZP_04409234.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9]
gi|229606316|ref|YP_002876964.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236]
gi|254226017|ref|ZP_04919617.1| MSHA biogenesis protein MshL [Vibrio cholerae V51]
gi|254850634|ref|ZP_05239984.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10]
gi|255743787|ref|ZP_05417744.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101]
gi|262153600|ref|ZP_06028728.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1]
gi|262167634|ref|ZP_06035338.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27]
gi|298501065|ref|ZP_07010866.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757]
gi|9654823|gb|AAF93575.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121548171|gb|EAX58243.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80]
gi|121630382|gb|EAX62777.1| MSHA biogenesis protein MshL [Vibrio cholerae V52]
gi|124122239|gb|EAY40982.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3]
gi|125621473|gb|EAZ49807.1| MSHA biogenesis protein MshL [Vibrio cholerae V51]
gi|126511222|gb|EAZ73816.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457]
gi|126520230|gb|EAZ77453.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
gi|146316656|gb|ABQ21195.1| MSHA biogenesis protein MshL [Vibrio cholerae O395]
gi|227008501|gb|ACP04713.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2]
gi|227012257|gb|ACP08467.1| MSHA biogenesis protein MshL [Vibrio cholerae O395]
gi|229344480|gb|EEO09455.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9]
gi|229354206|gb|EEO19137.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
gi|229355787|gb|EEO20707.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286]
gi|229368971|gb|ACQ59394.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236]
gi|254846339|gb|EET24753.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10]
gi|255738536|gb|EET93924.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101]
gi|262023970|gb|EEY42667.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27]
gi|262030627|gb|EEY49263.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1]
gi|297540313|gb|EFH76373.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757]
Length = 559
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 58/263 (22%), Positives = 95/263 (36%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235
QV L+ I EV Q G S SS+G + + G
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPG 332
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
T SS + ++T G+ L TP + G + L + V E
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452
Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535
>gi|186474451|ref|YP_001863422.1| general secretion pathway protein D [Burkholderia phymatum STM815]
gi|184198410|gb|ACC76372.1| general secretion pathway protein D [Burkholderia phymatum STM815]
Length = 717
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/314 (19%), Positives = 104/314 (33%), Gaps = 44/314 (14%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G Q + T + + + V++ L+ QV ++ I E+
Sbjct: 341 GSNEENQPGGMIQADAATNSLIITASDPVYRNLRSVIDQLDSR-RAQVYIEALIVELSAT 399
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG------------------- 249
+G Q S+G + G ++
Sbjct: 400 SSANLGIQWQGALLSNGGNNGLYGSSNFNSNGSQGIVNLTAQGAIIANNPAAALATTGTN 459
Query: 250 -------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ F +L AL +++ L+ P L + + A G
Sbjct: 460 LLNNGLNVGLLHRFGNVFGLGGLLQALSQSSDANILSTPNLITLDNEEAKIVVGSNVPVV 519
Query: 297 TVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNA 345
T S +T + D G+VLH P + G I L+I +E S N
Sbjct: 520 TGSYATPTANAATSVTAFNTFDRQDVGIVLHVKPQITDGGIIKLQIYSEDSSVDPTSTNN 579
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+ R +TV G IVL GL++D+ +PLL +P +G LFR+ +R
Sbjct: 580 PGGVTIIKRSVQSTVLSDDGEIIVLGGLMQDNYSNGNSKVPLLGDVPWIGQLFRSEEKSR 639
Query: 406 EETEIFIAATPFLV 419
+T + + P ++
Sbjct: 640 TKTNLMVFLRPVII 653
>gi|126643202|ref|YP_001086186.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii
ATCC 17978]
Length = 695
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
K+++LL++ + QV ++ I K++G + I + +
Sbjct: 418 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 476
Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
G G + F + L AL+
Sbjct: 477 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 536
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+
Sbjct: 537 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 596
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I +++ G +T V + +G T++L G+ + + +P
Sbjct: 597 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 655
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFR + ++ E+ I TP +V
Sbjct: 656 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 687
>gi|121607671|ref|YP_995478.1| general secretion pathway protein D [Verminephrobacter eiseniae
EF01-2]
gi|121552311|gb|ABM56460.1| general secretion pathway protein D [Verminephrobacter eiseniae
EF01-2]
Length = 720
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 12/240 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-------F 245
QV ++ +I EV + + G Q + S SG + A S GG F
Sbjct: 447 PTQVLIEASIIEVTLNDDLRYGLQWAFNDSRSGIDRGQGALSSRDGTSTGGILGGALAGF 506
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302
S + +L+ L T ++ +A P+L + +AS G Q + ++S
Sbjct: 507 SYALKSPAGAVRAMLNVLSAKTTVKVVASPSLMVLDNHTASIAVGDQTPIQAGTTSNLEG 566
Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+T++ D GV L TP+V + + ++I V++ + ++ R+ + V
Sbjct: 567 TVTSTNIEYKDTGVNLVVTPSVNAGNIVTMQIDQSVTDVGAKDEVTNQRAFLQRQLSSKV 626
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ SG +IV+ GL+++ K GIP+L +P+ G LF + + TE+ + TP +V+
Sbjct: 627 SVRSGESIVMGGLIQESSSSTKSGIPVLHALPLFGNLFGTTVNDGRRTELLVIITPRVVR 686
>gi|149194260|ref|ZP_01871357.1| putative type II protein secretion system D protein [Caminibacter
mediatlanticus TB-2]
gi|149135435|gb|EDM23914.1| putative type II protein secretion system D protein [Caminibacter
mediatlanticus TB-2]
Length = 450
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 56/262 (21%), Positives = 96/262 (36%), Gaps = 20/262 (7%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ + K MN L + +V + V I V + G S S S +
Sbjct: 178 TGDMKQIKAVDKFMNNLLNSLTKEVLIDVKIYSVELSKSHKTGIDWSQLSLSLPNS---S 234
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
K++ G + +F L+ L + + +++ P + ++ Q A + G
Sbjct: 235 VPLRAKYIFGSGSIFNSATFNSAAF---LNFLAQNGNVNSISNPKIMTLNNQKAIISVGD 291
Query: 292 QHLYKT----VSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS------ 337
YK V+ G GV+L TP + G I L I +S
Sbjct: 292 TIYYKYASKVVTDQNGNPQTQYTIGNKFVGVILDITPQISDDGTIILSIAPRISAFRDLN 351
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ P + + V++ TIVL GL+ DD G+P+L +IPI+ L
Sbjct: 352 QLSTQTVRDMPPDTKDNTMLSVVKVKDNDTIVLGGLISDDKSLKVNGVPILKEIPIVKYL 411
Query: 398 FRNSRFNREETEIFIAATPFLV 419
F + + E+ TP ++
Sbjct: 412 FSSKERITNKKELVFVITPHII 433
>gi|221069105|ref|ZP_03545210.1| general secretion pathway protein D [Comamonas testosteroni KF-1]
gi|220714128|gb|EED69496.1| general secretion pathway protein D [Comamonas testosteroni KF-1]
Length = 793
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 66/327 (20%), Positives = 115/327 (35%), Gaps = 43/327 (13%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G + T + V++ L+ QV ++ I EV D
Sbjct: 387 GTAQQPSTGGMIQADPTTNSLIITAPGPLYRQLRTVIDKLD-GRRAQVLIEALIVEVSAD 445
Query: 209 ILKQIGFQHS--------------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
Q+G Q S + G S + G +++ ++
Sbjct: 446 KAAQLGVQWSSVIRNNGRVLGVLGNGTSISGISNIFGLSGAVGNLVNGTPLTDSQASAIG 505
Query: 249 G-----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
G V S +++ ++ L+ P L + + AS G + T
Sbjct: 506 GMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTNILSTPNLMTLDNEEASIMVGENVPFPT 565
Query: 298 VSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
S + T+ D G +L P + G I + + E S G NA
Sbjct: 566 GSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQINENGTIKMAVYQENSAVKQGTANAQS 625
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ R ++ V + G +VL GL+ D+ Q +E +PLL IP+LG LFRN+ R++
Sbjct: 626 GATTTKRSIESNVLVEDGAIVVLGGLIADEYSQSQERVPLLGDIPLLGNLFRNTSRARKK 685
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHY 434
T + + P +++ + D Y
Sbjct: 686 TNLMVFLRPTVLRDASSTS-QLSQDRY 711
>gi|76811977|ref|YP_331636.1| general secretion pathway protein D [Burkholderia pseudomallei
1710b]
gi|167822031|ref|ZP_02453502.1| general secretion pathway protein D [Burkholderia pseudomallei 9]
gi|167900627|ref|ZP_02487832.1| general secretion pathway protein D [Burkholderia pseudomallei NCTC
13177]
gi|167921121|ref|ZP_02508212.1| general secretion pathway protein D [Burkholderia pseudomallei
BCC215]
gi|254194560|ref|ZP_04900991.1| general secretion pathway protein D [Burkholderia pseudomallei S13]
gi|76581430|gb|ABA50905.1| general secretion pathway protein D [Burkholderia pseudomallei
1710b]
gi|169651310|gb|EDS84003.1| general secretion pathway protein D [Burkholderia pseudomallei S13]
Length = 750
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + + + V++ L+ QV ++ + E++ +G Q +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423
Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
+G S G + GG G +
Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
+L ++ L+ P L + + A G T S S + T
Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543
Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
D G+ LH P + G + L++ TE S V G N P++ R +TV
Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659
>gi|167582578|ref|ZP_02375452.1| type II/III secretion system protein [Burkholderia thailandensis
TXDOH]
Length = 580
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 33/295 (11%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQV 196
+ L +Q ++ + + NLL + QV
Sbjct: 286 ARAADVQRLLAGSAAQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQV 345
Query: 197 TLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEGGD 244
++ I E R + +G + + +G A F +
Sbjct: 346 LIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGFDAATAG 405
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ + L ALE + ++ P + A G + Y+ G
Sbjct: 406 LTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGV 464
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ V + L P + GR+ L + +V++ +G P+ + T VE+ +
Sbjct: 465 SGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVEN 522
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP +V
Sbjct: 523 GGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 577
>gi|167908851|ref|ZP_02495942.1| general secretion pathway protein D [Burkholderia pseudomallei 112]
Length = 745
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + + + V++ L+ QV ++ + E++ +G Q +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423
Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
+G S G + GG G +
Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
+L ++ L+ P L + + A G T S S + T
Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543
Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
D G+ LH P + G + L++ TE S V G N P++ R +TV
Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659
>gi|126454161|ref|YP_001064292.1| general secretion pathway protein D [Burkholderia pseudomallei
1106a]
gi|134281369|ref|ZP_01768077.1| general secretion pathway protein D [Burkholderia pseudomallei 305]
gi|217423996|ref|ZP_03455496.1| general secretion pathway protein D [Burkholderia pseudomallei 576]
gi|226193043|ref|ZP_03788653.1| general secretion pathway protein D [Burkholderia pseudomallei
Pakistan 9]
gi|237814399|ref|YP_002898850.1| general secretion pathway protein D [Burkholderia pseudomallei
MSHR346]
gi|254258553|ref|ZP_04949607.1| general secretion pathway protein D [Burkholderia pseudomallei
1710a]
gi|126227803|gb|ABN91343.1| general secretion pathway protein D [Burkholderia pseudomallei
1106a]
gi|134247036|gb|EBA47122.1| general secretion pathway protein D [Burkholderia pseudomallei 305]
gi|163639391|gb|ABY28246.1| general secretion pathway protein D [Burkholderia pseudomallei]
gi|217393059|gb|EEC33081.1| general secretion pathway protein D [Burkholderia pseudomallei 576]
gi|225934643|gb|EEH30620.1| general secretion pathway protein D [Burkholderia pseudomallei
Pakistan 9]
gi|237506672|gb|ACQ98990.1| general secretion pathway protein D [Burkholderia pseudomallei
MSHR346]
gi|254217242|gb|EET06626.1| general secretion pathway protein D [Burkholderia pseudomallei
1710a]
Length = 757
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + + + V++ L+ QV ++ + E++ +G Q +
Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 430
Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
+G S G + GG G +
Sbjct: 431 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 490
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
+L ++ L+ P L + + A G T S S + T
Sbjct: 491 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 550
Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
D G+ LH P + G + L++ TE S V G N P++ R +TV
Sbjct: 551 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 610
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 611 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 666
>gi|315636411|ref|ZP_07891655.1| general secretion pathway protein D [Arcobacter butzleri JV22]
gi|315479277|gb|EFU69966.1| general secretion pathway protein D [Arcobacter butzleri JV22]
Length = 478
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 14/241 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------GG 243
+ QV ++ I EV +++ +IG + I SS+ A S G
Sbjct: 173 KAQVYVQAKIIEVNNELVNKIGISYGIINSSARSDGINAISSNLNGGSNAIKEAVDTLGI 232
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG----QHLYKTVS 299
+ + + L+ L++ A+ ++EP++ AI + +S G +
Sbjct: 233 RMNDLNIKSGLALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISSTLTD 292
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADT 358
T+ D G+ L P + S ++ L I T + V+AG P ++ T
Sbjct: 293 GGLQRTNYEREDIGLTLKVKPRISSDTKLTLEINTLLEGIKSTSVSAGQNPDTLKKEIKT 352
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G ++++ GL+++ + +++ +P+L IP+ G LF+N ++ + I TP++
Sbjct: 353 AAILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVIIVTPYM 412
Query: 419 V 419
+
Sbjct: 413 I 413
>gi|4139236|gb|AAD05173.1| general secretory pathway protein D [Burkholderia pseudomallei
1026b]
Length = 750
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + + + V++ L+ QV ++ + E++ +G Q +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423
Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
+G S G + GG G +
Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
+L ++ L+ P L + + A G T S S + T
Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543
Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
D G+ LH P + G + L++ TE S V G N P++ R +TV
Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659
>gi|53717646|ref|YP_106632.1| general secretory pathway protein D [Burkholderia pseudomallei
K96243]
gi|52208060|emb|CAH33990.1| general secretory pathway protein D [Burkholderia pseudomallei
K96243]
Length = 757
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + + + V++ L+ QV ++ + E++ +G Q +
Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 430
Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
+G S G + GG G +
Sbjct: 431 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 490
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
+L ++ L+ P L + + A G T S S + T
Sbjct: 491 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 550
Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
D G+ LH P + G + L++ TE S V G N P++ R +TV
Sbjct: 551 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 610
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 611 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 666
>gi|153834019|ref|ZP_01986686.1| msha biogenesis protein mshl [Vibrio harveyi HY01]
gi|148869663|gb|EDL68649.1| msha biogenesis protein mshl [Vibrio harveyi HY01]
Length = 544
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 112/303 (36%), Gaps = 29/303 (9%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
+L V + S + + T + + ++V L + + QV L+ I
Sbjct: 218 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDEIREVREFLGVSQERMQRQVILEAKI 277
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VLDRFSFE 257
EV Q G S +S G S S D + ++ G +F+
Sbjct: 278 LEVTLSDGYQQGINWSNMSASIGNSGSIVVDRNPAKLPLDAIGTLLGGQTNVTFSDGNFK 337
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSV 307
V++ + + L+ P +TA + Q + G + T SS +
Sbjct: 338 AVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVEL 397
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKA 356
T G+ L TP + + G + L + V E + ++ +R++
Sbjct: 398 TPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQLNLGGDFQNIQLPLAKSSIRES 457
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
D+ + G +V+ GL+K + +P L +P LG LFRN ++TE+ I P
Sbjct: 458 DSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNVTQKTELVILLKP 517
Query: 417 FLV 419
+V
Sbjct: 518 TVV 520
>gi|126441466|ref|YP_001057062.1| general secretion pathway protein D [Burkholderia pseudomallei 668]
gi|126220959|gb|ABN84465.1| general secretion pathway protein D [Burkholderia pseudomallei 668]
Length = 757
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 58/296 (19%), Positives = 106/296 (35%), Gaps = 37/296 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + + + V++ L+ QV ++ + E++ +G Q +
Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 430
Query: 220 TGSSSGPSKSFAAD-----------FGGKFVSEGGDFSVKGVLDRF-------------S 255
++ + G + GG G +
Sbjct: 431 ANNALYAGTNLVTGQTNLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 490
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
+L ++ L+ P L + + A G T S S + T
Sbjct: 491 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 550
Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
D G+ LH P + G + L++ TE S V G N P++ R +TV
Sbjct: 551 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 610
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 611 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 666
>gi|193078561|gb|ABO13584.2| putative outer membrane protein (ComQ) [Acinetobacter baumannii
ATCC 17978]
Length = 721
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
K+++LL++ + QV ++ I K++G + I + +
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502
Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
G G + F + L AL+
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+
Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I +++ G +T V + +G T++L G+ + + +P
Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 681
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFR + ++ E+ I TP +V
Sbjct: 682 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 713
>gi|114321906|ref|YP_743589.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1]
gi|114228300|gb|ABI58099.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1]
Length = 694
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 52/255 (20%), Positives = 100/255 (39%), Gaps = 21/255 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
++N L+I QV ++ I D + +G + T + S S+ A
Sbjct: 434 NLVNRLDIP-VQQVLIESRIVIADDDFSRDLGVRFGYTATGSLGSEGTAIGARPTPTPGI 492
Query: 243 GD-----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
G + + L A+E ++ P + + + A
Sbjct: 493 DGTDDLMVDLPAPAEAPRLGLAIGRIGDRLLQLELSAMETEGRGEVISSPRVITANQREA 552
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
+ G + Y+ +++GAT+V + + L TP + R+ + EVS +G
Sbjct: 553 NIRQGVEIPYQEE-TASGATNVEFKEAVLGLTVTPQITPDDRVIM--NLEVSNDTVGEVF 609
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+PS + T V + +G T+VL G+ + + +P +P +G LFRN
Sbjct: 610 AGVPSIDTQSVTTQVLVDNGETVVLGGVYERASGEQTRRVPFFGSLPGVGWLFRNRLTFD 669
Query: 406 EETEIFIAATPFLVK 420
E++E+ + TP ++
Sbjct: 670 EQSELLVFVTPRILD 684
>gi|299529584|ref|ZP_07043021.1| general secretion pathway protein D [Comamonas testosteroni S44]
gi|298722447|gb|EFI63367.1| general secretion pathway protein D [Comamonas testosteroni S44]
Length = 750
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 66/327 (20%), Positives = 114/327 (34%), Gaps = 43/327 (13%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G + T + V++ L+ QV ++ I EV D
Sbjct: 344 GTAQQPSTGGMIQADPTTNSLIITAPGPLYRQLRTVIDKLD-GRRAQVLIEALIVEVSAD 402
Query: 209 ILKQIGFQHS--------------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
Q+G Q S + G S + G +++ ++
Sbjct: 403 KAAQLGVQWSSVIRNNGRVLGVLGNGTSISGISNIFGLSGAVGNLVNGTPLTDSQASAIG 462
Query: 249 G-----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
G V S +++ ++ L+ P L + + AS G + T
Sbjct: 463 GMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTNILSTPNLMTLDNEEASIMVGENVPFPT 522
Query: 298 VSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
S + T+ D G +L P + G I + + E S G NA
Sbjct: 523 GSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQINENGTIKMAVYQENSAVKQGTANAQS 582
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ R ++ V + G +VL GL+ D+ Q +E +PLL IP+LG LFRN+ R++
Sbjct: 583 GATTTKRSIESNVLVEDGAIVVLGGLIADEYSQSQERVPLLGDIPLLGNLFRNTSRERKK 642
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHY 434
T + + P +++ D Y
Sbjct: 643 TNLMVFLRPTVLRDANSTS-QLSQDRY 668
>gi|91785777|ref|YP_560983.1| putative general secretory pathway protein D [Burkholderia
xenovorans LB400]
gi|91689731|gb|ABE32931.1| Putative general secretory pathway protein D [Burkholderia
xenovorans LB400]
Length = 814
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 42/309 (13%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
Q + T + + + V++ L+ QV L+ I E+ +
Sbjct: 389 DDNQAGGMIQADAATNSLIVTAAEPVYRNLRAVIDQLDAR-RAQVYLEALIVELNSNTSG 447
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------------------------- 246
+G Q + +S + V+
Sbjct: 448 NLGIQWQVANNSIFAGTNLQTGSSNSIVNLTAGAIAAGAAGAATGGLASAIGTQGLQQGL 507
Query: 247 ----VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ + +L AL + L+ P L + + A G +T S S
Sbjct: 508 NIGWIHNIFGVQGLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSN 567
Query: 303 --------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PS 350
+ D G+ LH P + G + L++ TE S V G P
Sbjct: 568 LTSSTATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTTNATTNPAGPE 627
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ R +TV +G IVL GL++D+ Q +PLL IP +G LFR+ + R +T +
Sbjct: 628 FTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNL 687
Query: 411 FIAATPFLV 419
+ P ++
Sbjct: 688 MVFLRPVII 696
>gi|149174476|ref|ZP_01853102.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris
DSM 8797]
gi|148846586|gb|EDL60923.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris
DSM 8797]
Length = 799
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 78/418 (18%), Positives = 155/418 (37%), Gaps = 35/418 (8%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
A I +G+ ++I + + + ++++V + D ++ S L +
Sbjct: 286 QDAEIMQVLDMLGELSGLNILTGQGVTGTISANLKNVTPAQA--LDAILRSRD---LTSE 340
Query: 93 NVG-------QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
G QA + L ++++ A L I N+ + ++
Sbjct: 341 KEGEFIYVMTQAQLELKKKSSRKVITKLYSPFYISAKELQNLITPILTENVGIVSLTSPS 400
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
+ G+ + ++T +++ ++I QV ++ I V
Sbjct: 401 EV-GIAPDPTSAG-GDSFAQTDSILVRDYPEILEEVDRLLEKMDIP-PMQVVIEAMILSV 457
Query: 206 RRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGGDF-----SVK 248
+ + G ++ G ++ + F V G F +K
Sbjct: 458 ALNDDMKFGVNFAMLGGNNKNLVVDGNGNTLNNASGFPGSGSSSIVPPTGQFIADVAGLK 517
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATS 306
+ ALE T +A P L A++ Q A G + Y TV+ + T +
Sbjct: 518 YGFLHGDISGFIEALEDVTETNLIASPQLRALNKQKAELIIGDRISYSTVTQNGNTSIQN 577
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
V D G+VL+ P + G+I + + E S I + ++P R + T V + G
Sbjct: 578 VNFLDSGIVLNLRPFITPDGQIRMEVHPERSSATINPST-NLPDLRTTEVTTNVMVRDGH 636
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
T+V+ GL+++ + +P L +P++G FR R TE+ + TP +V+ A
Sbjct: 637 TVVIGGLIEERTSDTRNQVPFLGALPVIGNAFRQQREITNRTELIVLITPRIVRAEAA 694
>gi|326315788|ref|YP_004233460.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323372624|gb|ADX44893.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 715
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 58/336 (17%), Positives = 120/336 (35%), Gaps = 50/336 (14%)
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIA 191
+++ ++ +++ G T S+R ++E +Q + ++++ L++A
Sbjct: 383 ADMVAQLANNSTGSTGT-STRFLSERGSAIAEPRTNQLFVTDTPAKLEEVRQLLSTLDVA 441
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHS--------------------------------I 219
QV ++ I E R + +G +
Sbjct: 442 VR-QVMIEARIVEARDTFGRSLGVRLGGADLRANRGGDGGYSVGGNNRLAIGTSYNNAVA 500
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-----------LHALERATA 268
+ G + + G FV+ S F+ L A+E
Sbjct: 501 SSGGGGTVATGSDAAGSTFVNLPAALSSGASFGNFALTLFNSAANRFLTLELSAMEADGQ 560
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+ ++ P L A G ++ Y + GAT++ + L TP + G I
Sbjct: 561 GKVVSSPRLITADQTKALIEQGTEYPYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGNI 619
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
L + +V++ G + T V + +GGT+V+ G+ + + + IPLL
Sbjct: 620 ILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEETNQENKIPLL 677
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
+P++G LF+N + E+ + TP ++
Sbjct: 678 GDVPVVGNLFKNRTRESTKREMLVFITPKVISDKGP 713
>gi|184159708|ref|YP_001848047.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
ACICU]
gi|239501963|ref|ZP_04661273.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
AB900]
gi|183211302|gb|ACC58700.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
ACICU]
gi|322509621|gb|ADX05075.1| HofQ [Acinetobacter baumannii 1656-2]
gi|323519639|gb|ADX94020.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
TCDC-AB0715]
Length = 721
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
K+++LL++ + QV ++ I K++G + I + +
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502
Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
G G + F + L AL+
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+
Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I +++ G +T V + +G T++L G+ + + +P
Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 681
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFR + ++ E+ I TP +V
Sbjct: 682 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 713
>gi|217969316|ref|YP_002354550.1| type II and III secretion system protein [Thauera sp. MZ1T]
gi|217506643|gb|ACK53654.1| type II and III secretion system protein [Thauera sp. MZ1T]
Length = 625
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 68/305 (22%), Positives = 113/305 (37%), Gaps = 36/305 (11%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
A QV ++ TI EV + G + G PS S G S S
Sbjct: 296 AARRQVMIEATIVEVTLADGYRQGIDWTRLGV---PSWSVRPRGSGDATSGQPTLSYL-- 350
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------ 304
+ + L LE ++ L+ P L+ ++ Q+A + +Y V S+T
Sbjct: 351 --SANSDIRLELLETFGTVKVLSSPRLSVLNNQTAMLKVVEEVVYFLVDSTTTEYDDRKQ 408
Query: 305 ------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMP 349
T+ + G+V+ TP + + G I L ++ +S P +G +P
Sbjct: 409 ARISATTTPQSVSVGMVMSVTPQISADGDITLNVRPTISGISGFKDDPNPSLGDIPNRVP 468
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
R R+ ++ + L SG VL GL++D I IPL +P++G LF N TE
Sbjct: 469 QIRTREIESMLRLRSGEVAVLGGLMEDRIDHDTGRIPLFGDLPVVGELFTRRDNNVRRTE 528
Query: 410 IFIAATPFLVKP------VAMRDLSRPDDHYS--VEDDAKAFFFNRVNKIYGPKEASEVE 461
+ I P L+ A PDD + + F + + +
Sbjct: 529 LLIFLRPLLIDEPGMRGGYAEYAGHLPDDDFLLDSPSPGQRNFPHLPLRPLLAPAGAVSA 588
Query: 462 GQNYK 466
+ +
Sbjct: 589 AEGFS 593
>gi|91794695|ref|YP_564346.1| type II and III secretion system protein [Shewanella denitrificans
OS217]
gi|91716697|gb|ABE56623.1| type II and III secretion system protein [Shewanella denitrificans
OS217]
Length = 549
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 62/249 (24%), Positives = 102/249 (40%), Gaps = 23/249 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
QV L+ I EV Q G Q + G +S + GV
Sbjct: 277 RQVILEAKIVEVTLSDGYQQGIQWDNVLGHIDSTNIEFGTAKGPNLSNSITSVLGGVTSL 336
Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---- 305
F T++ L+ + L+ P +TA + Q A G + T SST T
Sbjct: 337 SVKNTDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGNDEYFVTKVSSTTVTGTNP 396
Query: 306 ------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR 352
+T G+ L TP + S G + L + V + I ++ ++P +
Sbjct: 397 ITTPEVELTPFFSGIALDVTPQIDSEGNVLLHVHPSVIKVTEQIKDIQINGSSSELPLAQ 456
Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R++DT + SG +++ GL+K D ++ +PLL IP+LG +F N ++TE+
Sbjct: 457 SEIRESDTVIRAASGDVVIIGGLMKSDNVEMVSKVPLLGDIPLLGEIFTNRSKQMKKTEL 516
Query: 411 FIAATPFLV 419
I P +V
Sbjct: 517 IIMLKPTVV 525
>gi|291279696|ref|YP_003496531.1| general secretion pathway protein D [Deferribacter desulfuricans
SSM1]
gi|290754398|dbj|BAI80775.1| general secretion pathway protein D [Deferribacter desulfuricans
SSM1]
Length = 621
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 58/255 (22%), Positives = 103/255 (40%), Gaps = 28/255 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------------GPSKS 229
QV ++ + E + G + G + G S +
Sbjct: 330 RKQVYVEALVLETSIEKGADFGVEWLAGGGNENFAGSAGFLNNGALTNFQSPVLEGNSPN 389
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
FAA GG + G+ + + +++ ++ +AI ++ P + + + A
Sbjct: 390 FAALPGGFTAAILGNVITYEGVKFPTLSALVNFVKTDSAINIISNPQILTLDNEEAEVFV 449
Query: 290 GGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVN 344
G + K +++ S D G+ L TP + + L+I+ EV + N
Sbjct: 450 GENRPFLTSTKFDANNNPVQSYDYRDVGIRLKITPHISDNKTLTLKIEQEVKKVIANAGN 509
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
P RK T VEL G T+V++GL+ DD +P LSKIPILG LF++ +
Sbjct: 510 DLTAPITLTRKTKTMVELIDGYTMVISGLIGDDTSVSNSEVPFLSKIPILGWLFKSRNRS 569
Query: 405 REETEIFIAATPFLV 419
R +T + + T ++
Sbjct: 570 RSKTNMMVFITAKVI 584
>gi|226953742|ref|ZP_03824206.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244]
gi|226835474|gb|EEH67857.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244]
Length = 590
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 52/296 (17%), Positives = 99/296 (33%), Gaps = 38/296 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
AV T +K+++LL+++ + QV ++ I D K++G + I
Sbjct: 289 AVADVRTNTLIVNDTAQNIDKIRKMVDLLDVSVK-QVMIEARIVRASTDFTKEMGVKWGI 347
Query: 220 TGSSSGPSK----------------------------------SFAADFGGKFVSEGGDF 245
+ + D G
Sbjct: 348 LSQGITRNNDLLVGGSDTTLWNLREPKKDSETGGWKYEIERPDNLNVDLGAVTPGASRIA 407
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TG 303
L F + L A++ ++ P + Q A SG + Y + +
Sbjct: 408 FGLISLSDFMLDLELSAVQADGFGEVISTPKVMTADKQPAKIESGTKIPYASSTGGGANA 467
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
D + L TP++ G++ +++ P G + + DT V +
Sbjct: 468 VPKTEFIDATLSLDVTPSITPDGKVMMKLNIAKDAPGAPTPTGQL-TISKNSIDTNVLVD 526
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G T+VL G+ + + + +P L +P +G LFR + E+ I TP +V
Sbjct: 527 NGETVVLGGIFEQENLSSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIV 582
>gi|254469140|ref|ZP_05082545.1| general (type II) secretion pathway (GSP) D protein, putative
[Pseudovibrio sp. JE062]
gi|211960975|gb|EEA96170.1| general (type II) secretion pathway (GSP) D protein, putative
[Pseudovibrio sp. JE062]
Length = 749
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 14/247 (5%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
V+ L++ QV ++ TIAEV + G Q + + AD + G
Sbjct: 488 VVQALDLPLS-QVVIEATIAEVNINDNLSYGVQWYLAKGNFAGGIGAVADGASRPTKAAG 546
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-- 301
+ + VL AL+ T ++ ++ P LT + G+ A G Q + + S S
Sbjct: 547 GALSLNTVG---VDVVLKALQNITKVKVISSPYLTVLDGRKARLVIGDQVPFASRSQSSS 603
Query: 302 -----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVR 354
T V D G+VL P + S + L+IQ EVS V P+ R
Sbjct: 604 NDGNVTVTNEVDVKDTGIVLQVEPNIRSNNSVLLQIQQEVSNVVQNKTEEGSLTPTIATR 663
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFIA 413
++ + + SG TI+L GL+++ + + G+P+L KIP+ G LF+ N+ + TE+ +
Sbjct: 664 TINSDIVVESGRTILLGGLIQERKENGESGVPILRKIPVFGELFKENTTNDTRRTELLVM 723
Query: 414 ATPFLVK 420
TP +V+
Sbjct: 724 ITPRVVR 730
>gi|269961295|ref|ZP_06175661.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3]
gi|269833961|gb|EEZ88054.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3]
Length = 544
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 64/303 (21%), Positives = 111/303 (36%), Gaps = 29/303 (9%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
+L V + S + + T + + ++V L + + QV L+ I
Sbjct: 218 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDEIREVREFLGVSQERMQRQVILEAKI 277
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VLDRFSFE 257
EV Q G S +S G S S D + S+ G +FE
Sbjct: 278 LEVTLSDGYQQGINWSNMSASIGNSGSVVVDRNPVSLPLDAIGSLLGGQTNVTFSDGNFE 337
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSV 307
V+ + + L+ P +TA + Q + G + T SS +
Sbjct: 338 AVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVEL 397
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKA 356
T G+ L TP + + G + L + V E + ++ +R++
Sbjct: 398 TPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKKLNLGGDFQDIQLPLAKSSIRES 457
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
D+ + G +V+ GL+K + +P L +P LG LFRN ++TE+ I P
Sbjct: 458 DSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNVTQKTELVILLKP 517
Query: 417 FLV 419
+V
Sbjct: 518 TVV 520
>gi|53723933|ref|YP_104304.1| general secretion pathway protein D [Burkholderia mallei ATCC
23344]
gi|121600876|ref|YP_994796.1| general secretion pathway protein D [Burkholderia mallei SAVP1]
gi|124384347|ref|YP_001027865.1| general secretion pathway protein D [Burkholderia mallei NCTC
10229]
gi|126450814|ref|YP_001082187.1| general secretion pathway protein D [Burkholderia mallei NCTC
10247]
gi|238562298|ref|ZP_00440689.2| general secretion pathway protein D [Burkholderia mallei GB8 horse
4]
gi|52427356|gb|AAU47949.1| general secretion pathway protein D [Burkholderia mallei ATCC
23344]
gi|121229686|gb|ABM52204.1| general secretion pathway protein D [Burkholderia mallei SAVP1]
gi|124292367|gb|ABN01636.1| general secretion pathway protein D [Burkholderia mallei NCTC
10229]
gi|126243684|gb|ABO06777.1| general secretion pathway protein D [Burkholderia mallei NCTC
10247]
gi|238522939|gb|EEP86381.1| general secretion pathway protein D [Burkholderia mallei GB8 horse
4]
Length = 757
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + + + V++ L+ QV ++ + E++ +G Q +
Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDSR-RAQVYIEALVVELQATTSANLGIQWQV 430
Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
+G S G + GG G +
Sbjct: 431 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 490
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
+L ++ L+ P L + + A G T S S + T
Sbjct: 491 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 550
Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
D G+ LH P + G + L++ TE S V G N P++ R +TV
Sbjct: 551 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 610
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 611 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 666
>gi|254357385|ref|ZP_04973659.1| general secretion pathway protein D [Burkholderia mallei
2002721280]
gi|148026449|gb|EDK84534.1| general secretion pathway protein D [Burkholderia mallei
2002721280]
Length = 750
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + + + V++ L+ QV ++ + E++ +G Q +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDSR-RAQVYIEALVVELQATTSANLGIQWQV 423
Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
+G S G + GG G +
Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
+L ++ L+ P L + + A G T S S + T
Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543
Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
D G+ LH P + G + L++ TE S V G N P++ R +TV
Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659
>gi|260556918|ref|ZP_05829135.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
19606]
gi|260409524|gb|EEX02825.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
19606]
Length = 721
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
K+++LL++ + QV ++ I K++G + I + +
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502
Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
G G + F + L AL+
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+
Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I +++ G +T V + +G T++L G+ + + +P
Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 681
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFR + ++ E+ I TP +V
Sbjct: 682 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 713
>gi|169794485|ref|YP_001712278.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii
AYE]
gi|213158943|ref|YP_002320941.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057]
gi|215482074|ref|YP_002324256.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
AB307-0294]
gi|301345422|ref|ZP_07226163.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
AB056]
gi|301510068|ref|ZP_07235305.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
AB058]
gi|301595996|ref|ZP_07241004.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
AB059]
gi|169147412|emb|CAM85273.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii
AYE]
gi|213058103|gb|ACJ43005.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057]
gi|213988167|gb|ACJ58466.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
AB307-0294]
Length = 721
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
K+++LL++ + QV ++ I K++G + I + +
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502
Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
G G + F + L AL+
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+
Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I +++ G +T V + +G T++L G+ + + +P
Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 681
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFR + ++ E+ I TP +V
Sbjct: 682 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 713
>gi|289207464|ref|YP_003459530.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix]
gi|288943095|gb|ADC70794.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix]
Length = 710
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 53/265 (20%), Positives = 102/265 (38%), Gaps = 30/265 (11%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------------- 221
+++ L++ QV ++ I +++G + I+G
Sbjct: 449 RLVQTLDVP-VQQVLIETRIVIAEDTFNRELGARFGISGTRGDRRTRVGGAGSIEGADAA 507
Query: 222 ------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
G + + + G + + + L AL+ ++ P
Sbjct: 508 RDASTAGVGGIAIGDRLNSSLPASGDAGRAGISLLRSGVLLDLELSALQVEGRGEIISSP 567
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ +GQ+AS G + ++ +++GATS + + TP + G + L I+
Sbjct: 568 RVITANGQTASIKQGEEIPFQEA-TASGATSTQFIEAVLSTEVTPQITPNGNVILDIRVT 626
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
EP +P R+ +T V + +G T+VL G+ + D + E +P IP LG
Sbjct: 627 KDEPS-QREVLGVPGINKREVNTQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLG 685
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
LFRN + E+ I TP ++
Sbjct: 686 NLFRNRSTENTKAELLIFVTPRVLD 710
>gi|170288656|ref|YP_001738894.1| type II and III secretion system protein [Thermotoga sp. RQ2]
gi|170176159|gb|ACB09211.1| type II and III secretion system protein [Thermotoga sp. RQ2]
Length = 1282
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 76/395 (19%), Positives = 150/395 (37%), Gaps = 45/395 (11%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---DVVVHSPRTMY 88
A A + EI IS+ V + + + + A + + S Y
Sbjct: 928 AEDAPLYDLLEEIAGELGISVMF-------VSIPSEKITMKADNVAWEKFIDLISQNYGY 980
Query: 89 LFGKNVGQANVILIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
LF G V ++ + + + + ++ + + V+ +++ +V+
Sbjct: 981 LFDNKNG---VYVVSKPKQDLARRYIYDVPHNFDQIKALIE--FYGGTVYVDSLNNFMVV 1035
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G+ TI ++ L QV + I V R
Sbjct: 1036 TGISETI-----------------------KKELDDIIEKLK-KPTKQVEISAKI--VDR 1069
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERA 266
++ ++ + + + + + FV++ DF + G + + +
Sbjct: 1070 SLIDRLSKETVLELTGGNVNVGSSGAGISFFVTDYLDFEKILGEILNSTLSLQFSDQKTN 1129
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
T LA P + SG+ A G + Y T ++ G V + G+ L TP V S
Sbjct: 1130 TLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDD 1189
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L + + SEP +N ++P R R+A T + + +G TI + GL+++ + +P
Sbjct: 1190 TIELDLFVKASEPGNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLP 1247
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
L +P++G FR N+E+ ++ I T +V+P
Sbjct: 1248 FLGDLPVIGQFFRTKSENKEKRDLVIFLTVRVVEP 1282
>gi|284432099|gb|ADB84857.1| PilQ [Bdellovibrio sp. JSS]
Length = 724
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 55/328 (16%), Positives = 123/328 (37%), Gaps = 20/328 (6%)
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+LE R S +V+ + + + D R V T +
Sbjct: 403 NNLEPLKVRMFPVSYAKVDELEKKIK-----DFLGDRGRVVGDVRTNALVVTDIEENLER 457
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSK 228
+ +++ L+ QV+++ I E + + IG S TG+ + PS
Sbjct: 458 AARLIASLD-TQPAQVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSF 516
Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+ G + + +V + + L E ++ ++ P + +S + A
Sbjct: 517 NVNQSAAGSSGALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADIN 576
Query: 289 SGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
+ + V+ + AT + L TP V + G + +++ + +
Sbjct: 577 QTTEVPVRQVTQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVNRQFRGADVSSAGQ 636
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ R+A+T V + +G T V+ G+ + D + G+P ++P + LF+ ++E
Sbjct: 637 GAFAVNSREANTRVLVKNGQTAVIGGIYQSDATDGEVGVPWFRELPYVSYLFKTKNISKE 696
Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHY 434
++E+ I TP ++ + + +
Sbjct: 697 KSELLIFLTPXIMGQIDNNAGNPTTTDF 724
>gi|118475530|ref|YP_892173.1| type II and III secretion system protein [Campylobacter fetus
subsp. fetus 82-40]
gi|118414756|gb|ABK83176.1| type II and III secretion system protein [Campylobacter fetus
subsp. fetus 82-40]
Length = 512
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 59/276 (21%), Positives = 104/276 (37%), Gaps = 32/276 (11%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKS 229
+N L + QV + V+I V G S +
Sbjct: 224 LNQLENRLKKQVMIDVSIIAVELSNSYTKGIDWSKFELGFNSYLGNDPVTGAPSSIQFGT 283
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+A + + V G S + VL+ LE + ++ P + ++ Q A T
Sbjct: 284 GSAGNPAQSLRNITGGFVLGGGINLSMDGVLNFLETKGRTKVVSSPKIMTMNNQQALITV 343
Query: 290 GGQHLYKTVSSSTGATSVT----------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
G Y+ +T + T + G++L+ P V GRI LRI +S
Sbjct: 344 GDNINYRVQEDTTNNNTQTAVTNTTYTQYSIFIGILLNLLPEVSDDGRIMLRINPSLSSF 403
Query: 340 VIGVNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
G + P +K T V++ SG TI+L GL+ + + +P+L IP
Sbjct: 404 KYGDDNRRQANIREIAPDTLQKKLSTVVQVNSGDTIILGGLIGETKGKDNTSVPVLGDIP 463
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
+ G LF++++ + TE+ TP ++ + +
Sbjct: 464 LFGNLFKSTKDSVSTTELIFIITPKVINNETPKQIR 499
>gi|209694066|ref|YP_002261994.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio
salmonicida LFI1238]
gi|208008017|emb|CAQ78154.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio
salmonicida LFI1238]
Length = 546
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 56/285 (19%), Positives = 101/285 (35%), Gaps = 30/285 (10%)
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + + K+ + + + + QV L+ + EV Q G S ++
Sbjct: 239 QASVITITASPDELRKVKQFLGISHKRLQRQVILEAKLLEVTLSDGYQQGINWSNLTAAV 298
Query: 225 GP---------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
G + G + + +F VL ++ + L+ P
Sbjct: 299 GGTDIVFGQVPGTTAGVLPGMDAIGSLLGGQTNITVSDGNFSAVLSFMDTQGDLNVLSSP 358
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSP 325
+TA + Q A G + T SS + ++T G+ L TP +
Sbjct: 359 RVTAANNQKAVIKVGRDEYFVTEVSSVTGNGDNSNASPEVTLTPFFSGISLDVTPQIDDK 418
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSY-----------RVRKADTTVELPSGGTIVLAGLL 374
G + L + V + D+ +R++D+ + SG +V+ GL+
Sbjct: 419 GNVMLHVHPSVIDVETETKIIDLGDVGGVLELPLAKSSIRESDSVIRAKSGDVVVIGGLM 478
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
K +P L IP+LG LFRN +TE+ I P +V
Sbjct: 479 KSQTVDQVSKVPFLGDIPVLGHLFRNVSQLTTKTELVILLKPTVV 523
>gi|85704683|ref|ZP_01035785.1| general secretion pathway protein D [Roseovarius sp. 217]
gi|85671091|gb|EAQ25950.1| general secretion pathway protein D [Roseovarius sp. 217]
Length = 648
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 64/371 (17%), Positives = 126/371 (33%), Gaps = 41/371 (11%)
Query: 102 IGHDGKQMLNLDIL-IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
+ + + + + L +R+ E + T V G+ ++ Q A
Sbjct: 240 LDRPQRSIATEVVHLNYANATDLADVIRQSFGAPEASTEGAAPTAVPGGITIVAEEQQNA 299
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ ++ + ++ DQV ++ I E+ + + FQ
Sbjct: 300 LIITAPTDRIASITGAVRGLDQR---------PDQVLIEAVIFELSVESFSDLSFQFGGV 350
Query: 221 GSSSGPSKS-------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ + G + GG D+ L AL +
Sbjct: 351 IDGATVGGVEFALQGRPTLTSLVSTVLAGNAPTGGGTGGSIAAFDKSGIGGFLAALASKS 410
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHF 318
+ + L+ P++ ++ + A + T S ST ++ D G+ L
Sbjct: 411 STKLLSTPSILTLNNREAEIVVAQNVPFVTGSFSTVGDSAVPNQPFQTIQRQDVGLTLTV 470
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
TP + + L I EVS +A R+ T V + G I+L GLL++
Sbjct: 471 TPQITRDKTVRLEINQEVSNLTNAASAAGGEITSKRELSTNVLVRDGHVIMLGGLLENGS 530
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA---------MRDLSR 429
+ + +P LS++P+LG LF+ N + + + P ++ R+ R
Sbjct: 531 GSVNQRVPGLSELPLLGRLFKGRSVNENQRILLVMLRPRILSSDEEARELTKRLAREAKR 590
Query: 430 PDDHYSVEDDA 440
D+ + DD
Sbjct: 591 AADYIAPADDG 601
>gi|325123720|gb|ADY83243.1| type IV pilus assembly protein PilQ [Acinetobacter calcoaceticus
PHEA-2]
Length = 721
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 48/272 (17%), Positives = 95/272 (34%), Gaps = 37/272 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
K+++LL++ + QV ++ I K++G + I + +
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502
Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
G G + F + L AL+
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYG 562
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
++ P + Q A +G Q Y+T ++S S + D + L TP++ G+
Sbjct: 563 EVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGK 622
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I +++ G T V + +G T++L G+ + + +P
Sbjct: 623 IQMKLDISKDSVS-GAAPNGELILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKVPF 681
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P +G LFR + + ++ E+ I TP +V
Sbjct: 682 FGDLPGIGRLFRKDQKSDDKQELLIFVTPRIV 713
>gi|262280337|ref|ZP_06058121.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
gi|262258115|gb|EEY76849.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
Length = 717
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 48/268 (17%), Positives = 100/268 (37%), Gaps = 33/268 (12%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228
K+++LL++ + QV ++ I K++G + I +
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGVNSNNSLLVGGSDTTLWNL 502
Query: 229 ---------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
+ D G + F + L AL+ ++
Sbjct: 503 REPDDKGKYTIERPDNLNVDLGVTSTGASSIAFSLISMSDFMLDLELSALQADGYGEVIS 562
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
P + Q A +G Q Y+T ++S + + D + L TP++ G+I ++
Sbjct: 563 TPKVMTADKQRARVATGQQVPYQTTTNSAAGSTATTSFKDALLSLDVTPSITPDGKIQMK 622
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ G++ + +T V + +G T++L G+ + + +P L +
Sbjct: 623 LDISKDSVADSAPNGEL-ILNKNQINTNVLVNNGETVILGGVFEQATSNSQTKVPFLGDL 681
Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
P++G LFR + ++ E+ I TP +V
Sbjct: 682 PVVGRLFRKDVKSDDKQELLIFVTPRIV 709
>gi|78224554|ref|YP_386301.1| type II and III secretion system protein:NolW-like [Geobacter
metallireducens GS-15]
gi|78195809|gb|ABB33576.1| type II and III secretion system protein:NolW-like protein
[Geobacter metallireducens GS-15]
Length = 636
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 58/251 (23%), Positives = 99/251 (39%), Gaps = 14/251 (5%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---------KSFAAD 233
+V+ L+ QV ++ IAEV D K++G Q +++G + + +F
Sbjct: 350 QVIQKLDKR-RRQVFVQAVIAEVSLDKAKELGLQLAVSGGGTAGNTAEAGVFDPFNFVGG 408
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
+ + + VL AL A+ L+ P + + A G
Sbjct: 409 ASPQQAAILNVLTGFAGSSNLQLGGVLKALISNGAVNVLSTPNILTSDNKEAEIFVGENV 468
Query: 294 LY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
+ S+ S+ D G+ L TP + + L I E+S V
Sbjct: 469 PFLTQTNLTSTGLSQQSIERKDTGITLRITPQISEGEFVKLDIYQEISAVKDSVGQAKDL 528
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
R A T V + T+V+ GL++D + IP+L IP+LG F+ RE+T
Sbjct: 529 VTTKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPILGDIPLLGWFFKTKSARREKTN 588
Query: 410 IFIAATPFLVK 420
+ I TP +++
Sbjct: 589 LMIVLTPRIIR 599
>gi|57242551|ref|ZP_00370489.1| general secretory pathway protein D [Campylobacter upsaliensis
RM3195]
gi|57016836|gb|EAL53619.1| general secretory pathway protein D [Campylobacter upsaliensis
RM3195]
Length = 468
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 58/255 (22%), Positives = 98/255 (38%), Gaps = 16/255 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L + QV + V+I V + G + + + S
Sbjct: 197 GEYITKLENRLKKQVIIDVSIIAVNLNENHSSGINWQNFNLDFVSTTQNGQNSFIQLQSG 256
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G G+ +F +VL+ L + + L+ P L A++ Q A + G Y+ SS
Sbjct: 257 QGFVKNLGLRANINFNSVLNFLSQNGKTQVLSNPKLMALNNQQAIISVGDTINYQVKESS 316
Query: 302 TGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----- 347
G + TT G++L P + +I LRI +S+ +
Sbjct: 317 KGTENGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPR 376
Query: 348 --MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
P +K T V + + T++L GL+ + + + LSKIP+LG LF +
Sbjct: 377 TIAPDTIQKKLSTVVSMENNQTLILGGLISHNQIKEASEVSFLSKIPLLGLLFSGDETSS 436
Query: 406 EETEIFIAATPFLVK 420
TEI TP +V
Sbjct: 437 NSTEIVFIITPSIVD 451
>gi|254507437|ref|ZP_05119572.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16]
gi|219549693|gb|EED26683.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16]
Length = 527
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235
+ QV L+ I EV Q G S SS+G + + G
Sbjct: 241 RMQRQVILEAKILEVTLSDGYQQGINWSKAFSSNGTNYTIGQGSIVKDTSGSIIPAVLPG 300
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ V+ SF+ VL + + L+ P +TA + Q A G +
Sbjct: 301 LDAIGTLLGGQSNLVISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYF 360
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
T SS + +T G+ L TP + G + L + V + V
Sbjct: 361 VTDLSSVVGNGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVNEQVKE 420
Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P+L +P+LG
Sbjct: 421 IGFGDSRITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTVDQVSKVPVLGDVPVLGH 480
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 481 LFRNTSKLTQKTELVILLKPTVV 503
>gi|291327009|ref|ZP_06126658.2| competence protein E [Providencia rettgeri DSM 1131]
gi|291312226|gb|EFE52679.1| competence protein E [Providencia rettgeri DSM 1131]
Length = 358
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 5/228 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV + I R L+++G + + + + +S F+V + D
Sbjct: 132 KQVQITAHIISSSRTALQELGLEWGMMAGGNLNANHLYRYNRYSSISGQFAFNVLSLGDG 191
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
E L ALE+ + +A P L A Q AS G + V+S+ T V D
Sbjct: 192 L-LEMKLKALEKENLLSIIASPRLVASHQQPASIQQGTEIP--YVTSNDKKTHVQFKDAV 248
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371
+ + TP+++ +I L ++ + P + + + ++ T V + + T++L
Sbjct: 249 LGMDVTPSIVRDEKIELNLKISHNSPDTALTSSQHHHLAINKQEIATNVTIKNNETLILG 308
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G+ + ++ + G+P LS IP LG LF N+ + ++ + + TP L+
Sbjct: 309 GIFQQKQEKTEMGLPFLSHIPFLGTLFTNTAEHTDKRVLIVFITPKLI 356
>gi|225850376|ref|YP_002730610.1| general secretion pathway protein D [Persephonella marina EX-H1]
gi|225645330|gb|ACO03516.1| general secretion pathway protein D [Persephonella marina EX-H1]
Length = 669
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 70/305 (22%), Positives = 119/305 (39%), Gaps = 29/305 (9%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + + + V NL + QV + I EV LK+IG + +
Sbjct: 338 VADKASNSIIIYANKTEYEAIKELVQNLDK--QKKQVLVTALITEVSEQALKEIGVRWQV 395
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------------HALER 265
GS G + G + G V GVL + LER
Sbjct: 396 FGSQGGAAFRGGISKEGFYNIIGSTNFVAGVLSTSGENVEIGGNVLFFPDLLFLFSLLER 455
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPT 321
T ++ P + + AS + + + + G++L TP
Sbjct: 456 GTGFNIVSSPKILTMDNIEASINVSQVTPFAQSVKFDINGNPIINYDYKEVGLILKVTPH 515
Query: 322 VLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
+ I + I EV+E P IG + +P R+ +TT+ + +G TIVL GL+
Sbjct: 516 ISGDN-IVMEIHQEVNEVIGYEKPQIGEISYVVPITSKRELNTTITVTNGKTIVLGGLVS 574
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
+ EG+P S IPI+G LF+ + +T +F+ TPF+++ DL+R + +
Sbjct: 575 KKTIKTMEGVPFFSSIPIIGNLFKYRSEDLNKTNLFVFLTPFIIE--KPEDLARITEEHQ 632
Query: 436 VEDDA 440
+A
Sbjct: 633 KLSEA 637
>gi|157738059|ref|YP_001490743.1| general secretion pathway protein D [Arcobacter butzleri RM4018]
gi|157699913|gb|ABV68073.1| general secretion pathway protein D [Arcobacter butzleri RM4018]
Length = 478
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 14/241 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------GG 243
+ QV ++ I EV +++ +IG + I +S+ A S G
Sbjct: 173 KAQVYVQAKIIEVNNELVNKIGISYGIINASARSDGINAISSNLNGGSNAIKEAVDTLGI 232
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG----QHLYKTVS 299
S + + L+ L++ A+ ++EP++ AI + +S G +
Sbjct: 233 RMSDVNIKSGLALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISSTLTD 292
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADT 358
T+ D G+ L P + S ++ L I T + V+AG P ++ T
Sbjct: 293 GGLQRTNYEREDIGLTLKVKPRISSDTKLTLEINTLLEGIKSTSVSAGQNPDTLKKEIKT 352
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G ++++ GL+++ + +++ +P+L IP+ G LF+N ++ + I TP++
Sbjct: 353 AAILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVIIVTPYM 412
Query: 419 V 419
+
Sbjct: 413 I 413
>gi|281412148|ref|YP_003346227.1| type II and III secretion system protein [Thermotoga naphthophila
RKU-10]
gi|281373251|gb|ADA66813.1| type II and III secretion system protein [Thermotoga naphthophila
RKU-10]
Length = 1282
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 76/395 (19%), Positives = 150/395 (37%), Gaps = 45/395 (11%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---DVVVHSPRTMY 88
A A + EI IS+ V + + + + A + + S Y
Sbjct: 928 AEDAPLYDLLEEIAGELGISVMF-------VSIPSEKITMKADNVAWEKFIDLISQNYGY 980
Query: 89 LFGKNVGQANVILIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
LF G V ++ + + + + ++ + + V+ +++ +V+
Sbjct: 981 LFDNKNG---VYVVSKPKQDLARRYIYDVPHNFDQIKALIE--FYGGTVYVDSLNNFMVV 1035
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G+ TI ++ L QV + I V R
Sbjct: 1036 TGISETI-----------------------KKELDDIIEKLK-KPTKQVEISAKI--VDR 1069
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERA 266
++ ++ + + + + + FV++ DF + G + + +
Sbjct: 1070 SLIDRLSKETVLELTGGNVNVGSSGAGISFFVTDYLDFEKILGEILNSNLSLQFSDQKTN 1129
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
T LA P + SG+ A G + Y T ++ G V + G+ L TP V S
Sbjct: 1130 TLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDD 1189
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L + + SEP +N ++P R R+A T + + +G TI + GL+++ + +P
Sbjct: 1190 TIELDLFVKASEPGNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLP 1247
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
L +P++G FR N+E+ ++ I T +V+P
Sbjct: 1248 FLGDLPVIGQFFRTKSENKEKRDLVIFLTVKVVEP 1282
>gi|609625|gb|AAA58785.1| EpsD [Vibrio cholerae]
Length = 674
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 55/320 (17%), Positives = 111/320 (34%), Gaps = 49/320 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
G + + V ++ + S +V+ L+I QV ++ I E
Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237
+ +G Q S S G
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRN 412
Query: 238 ------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ + + +++A+ ++ L+ P++T + A
Sbjct: 413 ETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEA 472
Query: 286 SFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
SF G + T ++ +V + G+ L P + + L I+ EVS +
Sbjct: 473 SFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVL 532
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR+
Sbjct: 533 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRS 591
Query: 401 SRFNREETEIFIAATPFLVK 420
+ E+ + + P +++
Sbjct: 592 TSSQVEKKNLMVFIKPTIIR 611
>gi|323498120|ref|ZP_08103124.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM
21326]
gi|323316831|gb|EGA69838.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM
21326]
Length = 561
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 58/262 (22%), Positives = 107/262 (40%), Gaps = 28/262 (10%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------ 231
+++ L+I + QV ++ I V L ++G + + ++ + +
Sbjct: 300 IIDTLDIPVK-QVQIEARIVTVNEGNLDELGVRWGFSSTNGNNTVGGSIESNLFQAGLLE 358
Query: 232 ------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
+ F V + + L AL+R + ++ P L
Sbjct: 359 GDTLPVDDFLNVNLAATSTTASSIAFQVAKLGSDLLLDLELSALQRESKAEVISSPRLIT 418
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
+ + A G + Y SS+GATSVT + L TP + R+ L + P
Sbjct: 419 TNKKPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRP 477
Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
V+ G+ + ++ T V + +G T+VL G+ + + + +PLL +P+LGAL
Sbjct: 478 GDVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSVTDTVDKVPLLGDLPVLGAL 537
Query: 398 FRNSRFNREETEIFIAATPFLV 419
FR S ++E+ I TP +V
Sbjct: 538 FRRSYQQMGKSELLIFVTPKVV 559
>gi|121586611|ref|ZP_01676396.1| general secretion pathway protein D [Vibrio cholerae 2740-80]
gi|121726696|ref|ZP_01679921.1| general secretion pathway protein D [Vibrio cholerae V52]
gi|147674158|ref|YP_001218221.1| general secretion pathway protein D [Vibrio cholerae O395]
gi|153212585|ref|ZP_01948332.1| general secretion pathway protein D [Vibrio cholerae 1587]
gi|153802934|ref|ZP_01957520.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
gi|153817437|ref|ZP_01970104.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457]
gi|153821293|ref|ZP_01973960.1| general secretion pathway protein D [Vibrio cholerae B33]
gi|153825504|ref|ZP_01978171.1| general secretion pathway protein D [Vibrio cholerae MZO-2]
gi|153828338|ref|ZP_01981005.1| general secretion pathway protein D [Vibrio cholerae 623-39]
gi|227082847|ref|YP_002811398.1| general secretion pathway protein D [Vibrio cholerae M66-2]
gi|229507219|ref|ZP_04396724.1| general secretion pathway protein D [Vibrio cholerae BX 330286]
gi|229509860|ref|ZP_04399341.1| general secretion pathway protein D [Vibrio cholerae B33]
gi|229513661|ref|ZP_04403125.1| general secretion pathway protein D [Vibrio cholerae TMA 21]
gi|229516981|ref|ZP_04406427.1| general secretion pathway protein D [Vibrio cholerae RC9]
gi|229524711|ref|ZP_04414116.1| general secretion pathway protein D [Vibrio cholerae bv. albensis
VL426]
gi|229527341|ref|ZP_04416733.1| general secretion pathway protein D [Vibrio cholerae 12129(1)]
gi|229606725|ref|YP_002877373.1| general secretion pathway protein D [Vibrio cholerae MJ-1236]
gi|254285928|ref|ZP_04960890.1| general secretion pathway protein D [Vibrio cholerae AM-19226]
gi|254851270|ref|ZP_05240620.1| general secretion pathway protein D [Vibrio cholerae MO10]
gi|255744309|ref|ZP_05418261.1| general secretion pathway protein D [Vibrio cholera CIRS 101]
gi|262158581|ref|ZP_06029696.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1]
gi|262170026|ref|ZP_06037715.1| general secretion pathway protein D [Vibrio cholerae RC27]
gi|298500452|ref|ZP_07010256.1| general secretion pathway protein D [Vibrio cholerae MAK 757]
gi|11182423|sp|P45779|GSPD_VIBCH RecName: Full=General secretion pathway protein D; AltName:
Full=Cholera toxin secretion protein epsD; Flags:
Precursor
gi|121549170|gb|EAX59203.1| general secretion pathway protein D [Vibrio cholerae 2740-80]
gi|121630857|gb|EAX63239.1| general secretion pathway protein D [Vibrio cholerae V52]
gi|124116456|gb|EAY35276.1| general secretion pathway protein D [Vibrio cholerae 1587]
gi|124121547|gb|EAY40290.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
gi|126512023|gb|EAZ74617.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457]
gi|126521225|gb|EAZ78448.1| general secretion pathway protein D [Vibrio cholerae B33]
gi|146316041|gb|ABQ20580.1| general secretion pathway protein D [Vibrio cholerae O395]
gi|148876168|gb|EDL74303.1| general secretion pathway protein D [Vibrio cholerae 623-39]
gi|149740789|gb|EDM54880.1| general secretion pathway protein D [Vibrio cholerae MZO-2]
gi|150424110|gb|EDN16049.1| general secretion pathway protein D [Vibrio cholerae AM-19226]
gi|227010735|gb|ACP06947.1| general secretion pathway protein D [Vibrio cholerae M66-2]
gi|227014619|gb|ACP10829.1| general secretion pathway protein D [Vibrio cholerae O395]
gi|229334973|gb|EEO00458.1| general secretion pathway protein D [Vibrio cholerae 12129(1)]
gi|229338292|gb|EEO03309.1| general secretion pathway protein D [Vibrio cholerae bv. albensis
VL426]
gi|229346044|gb|EEO11016.1| general secretion pathway protein D [Vibrio cholerae RC9]
gi|229349538|gb|EEO14494.1| general secretion pathway protein D [Vibrio cholerae TMA 21]
gi|229353334|gb|EEO18273.1| general secretion pathway protein D [Vibrio cholerae B33]
gi|229354724|gb|EEO19645.1| general secretion pathway protein D [Vibrio cholerae BX 330286]
gi|229369380|gb|ACQ59803.1| general secretion pathway protein D [Vibrio cholerae MJ-1236]
gi|254846975|gb|EET25389.1| general secretion pathway protein D [Vibrio cholerae MO10]
gi|255737834|gb|EET93227.1| general secretion pathway protein D [Vibrio cholera CIRS 101]
gi|262021434|gb|EEY40146.1| general secretion pathway protein D [Vibrio cholerae RC27]
gi|262029742|gb|EEY48391.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1]
gi|297540621|gb|EFH76678.1| general secretion pathway protein D [Vibrio cholerae MAK 757]
gi|327485201|gb|AEA79608.1| General secretion pathway protein D [Vibrio cholerae LMA3894-4]
Length = 674
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 55/320 (17%), Positives = 111/320 (34%), Gaps = 49/320 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
G + + V ++ + S +V+ L+I QV ++ I E
Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237
+ +G Q S S G
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRN 412
Query: 238 ------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ + + +++A+ ++ L+ P++T + A
Sbjct: 413 ETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEA 472
Query: 286 SFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
SF G + T ++ +V + G+ L P + + L I+ EVS +
Sbjct: 473 SFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVL 532
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR+
Sbjct: 533 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRS 591
Query: 401 SRFNREETEIFIAATPFLVK 420
+ E+ + + P +++
Sbjct: 592 TSSQVEKKNLMVFIKPTIIR 611
>gi|332873777|ref|ZP_08441719.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059]
gi|332738000|gb|EGJ68885.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059]
Length = 712
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
K+++LL++ + QV ++ I K++G + I + +
Sbjct: 435 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 493
Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
G G + F + L AL+
Sbjct: 494 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 553
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+
Sbjct: 554 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 613
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I +++ G +T V + +G T++L G+ + + +P
Sbjct: 614 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 672
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFR + ++ E+ I TP +V
Sbjct: 673 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 704
>gi|303248827|ref|ZP_07335077.1| general secretion pathway protein D [Desulfovibrio fructosovorans
JJ]
gi|302489768|gb|EFL49699.1| general secretion pathway protein D [Desulfovibrio fructosovorans
JJ]
Length = 695
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 61/310 (19%), Positives = 104/310 (33%), Gaps = 33/310 (10%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
G + +++ +++ + + +++ L+ V ++ I EV
Sbjct: 318 GTTKKELNAEGVRIIADKGTNTLVVMAPSEEFPLFDEIIAQLD-RPRRGVFVEALIMEVS 376
Query: 207 RDILKQIGFQHSITGSSSGPS---------KSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
D G G + F + + +F
Sbjct: 377 TDKSVTFGVNWVAGGRVNAVGDNKKGGLVYGGFESSSTSVGTQNSLTLPGGLSVGMLTFP 436
Query: 258 TVL--------HALERATAIR----TLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302
+ AL L+ P L + + AS T Y T + S
Sbjct: 437 VKIGDFVYSNIQALISDGKSNNTFNILSTPQLMTLDNEEASITVAENRPYLTATDSGQNK 496
Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKA 356
D G L TP + I L+I EVS P+ R R
Sbjct: 497 QDRTYQQFDYKDVGTKLKITPHIGQSDSIRLKILQEVSRVDKAETLDTGSLQPTTRKRAT 556
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
TTV++ G TIV++GL+ Q +P +S IP+LG LF++ RE+T +++ TP
Sbjct: 557 QTTVQVKDGQTIVISGLMGVSDQDSFSNVPGISDIPVLGWLFKHKSKTREKTNLYVFITP 616
Query: 417 FLVKPVAMRD 426
+V+ A
Sbjct: 617 RIVQSPAQAA 626
>gi|93006778|ref|YP_581215.1| type II and III secretion system protein [Psychrobacter
cryohalolentis K5]
gi|92394456|gb|ABE75731.1| type II and III secretion system protein [Psychrobacter
cryohalolentis K5]
Length = 750
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 58/271 (21%), Positives = 110/271 (40%), Gaps = 33/271 (12%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ +N L+ QV ++ I EV D Q+G Q ++ ++SG + G VS
Sbjct: 393 EDAVNQLDSR-RSQVLIQAAIVEVSGDDATQLGVQWALGNANSGYGVVNFNNVGASAVSL 451
Query: 242 GGDFSVKGV------------------------LDRFSFETVLHALERATAIRTLAEPTL 277
G + + +L AL+ +T+ L+ P++
Sbjct: 452 AAAALSGGTGISAAAGSIAGALLGIGSSSKDSKGNAQFYGAILQALDSSTSANLLSMPSI 511
Query: 278 TAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + AS G + T S S+ ++ D G+ L+ P + + G + L
Sbjct: 512 LTLDNEKASILVGQNVPFVTGSYTTGSDSSTNPFQTIDRQDIGINLNVIPHIGANGTVRL 571
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRK-ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ EVS V G + +TT+ TI L GL++D+ ++ +P L
Sbjct: 572 EVSQEVSSVVPGSAGNASGLITNKSLINTTILADDQQTIALGGLMRDNSTTRQQKVPGLG 631
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
+P++G LFR+ N +++ + I P +++
Sbjct: 632 NVPLIGRLFRSDNDNSQKSNLIIFLQPTILR 662
>gi|77459397|ref|YP_348904.1| type II and III secretion system protein [Pseudomonas fluorescens
Pf0-1]
gi|77383400|gb|ABA74913.1| general secretion pathway protein D [Pseudomonas fluorescens Pf0-1]
Length = 783
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 68/296 (22%), Positives = 119/296 (40%), Gaps = 31/296 (10%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ T + + ++V++LL+ QV ++ I EV D + G Q
Sbjct: 432 TIQADATTNTLLISAPEPLYRNLREVIDLLDQR-RAQVVIESLIVEVGEDDASEFGVQWQ 490
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVK------------------GVLDRFSFETVL 260
G+ G A+ GG ++ G S+ G+ + +
Sbjct: 491 T-GNLGGKGVIGGANLGGSGINVNGKTSLDVLPQGLNLGYVNGTVDIPGIGKILDLKVLA 549
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDY 312
AL+ L+ P L + ++AS G + + +S+ +VT +
Sbjct: 550 RALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEV 609
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIV 369
G+ L+ P + G + L I EVS +A + R DT++ L G +V
Sbjct: 610 GLKLNVRPQISEGGTVKLDIYQEVSSIDERASAAANSAGIVTSKRALDTSILLDDGQIMV 669
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
L GLL+D Q + +P LS IP +GALFRN R + +T + + P++++ A
Sbjct: 670 LGGLLQDGYSQSNDAVPWLSNIPGIGALFRNERRSITKTNLMVFLRPYIIRDSAAG 725
>gi|262045226|ref|ZP_06018252.1| protein transporter HofQ [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037436|gb|EEW38681.1| protein transporter HofQ [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 331
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 5/230 (2%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGVL 251
QV L I + L+++G + + + S P + G +
Sbjct: 99 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNIGKI 158
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ E L ALER + +A P L A Q AS G + Y+ S +GATSV +
Sbjct: 159 NGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 218
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+
Sbjct: 219 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETLA 278
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++
Sbjct: 279 LGGIFSQKNKTARDSVPLLDDIPVLGRLFRRDGKDNERRELVVFITPRIL 328
>gi|332851353|ref|ZP_08433405.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150]
gi|332868764|ref|ZP_08438387.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113]
gi|332730069|gb|EGJ61397.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150]
gi|332733193|gb|EGJ64390.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113]
Length = 712
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
K+++LL++ + QV ++ I K++G + I + +
Sbjct: 435 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 493
Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
G G + F + L AL+
Sbjct: 494 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 553
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+
Sbjct: 554 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 613
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I +++ G +T V + +G T++L G+ + + +P
Sbjct: 614 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 672
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFR + ++ E+ I TP +V
Sbjct: 673 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 704
>gi|82703023|ref|YP_412589.1| type II and III secretion system protein [Nitrosospira multiformis
ATCC 25196]
gi|82411088|gb|ABB75197.1| type II and III secretion system protein [Nitrosospira multiformis
ATCC 25196]
Length = 789
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 61/302 (20%), Positives = 112/302 (37%), Gaps = 36/302 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T ++ + V+ L++ QV ++ IAE+ D + G Q
Sbjct: 418 IQADAATNSIIITAPDAIYNNLRAVVEKLDVRRV-QVYIEALIAEITADRAAEFGIQWQN 476
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVK--------------------------GVLDR 253
+++ + GG + G+
Sbjct: 477 LSNAAQGGTQVFGGTNFNAGTAGGGSIISTAQNPIANAASGLTIGIMNGLVTAIPGIGPV 536
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------STGAT 305
+ T++ ALE L+ PTL ++ + A G T ++
Sbjct: 537 LNIHTLIRALETDANANILSTPTLLTLNNEEARIIIGQNVPIPTGQFIPPVGGAVTSPFQ 596
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPS 364
+V+ D G+ L P + + ++I EVS V G NA + R ++TV +
Sbjct: 597 TVSRQDVGLSLKIKPLISEGNTVRVQIFQEVSSVVPGTVNATNGLITNKRSIESTVLVDD 656
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G +VL GL++D + E IPL+ IP+ G LF ++ +R +T + + P L++
Sbjct: 657 GQILVLGGLMQDSVNDSVERIPLVGAIPLFGQLFSYNKRSRNKTNLMVFLRPTLMRAGDA 716
Query: 425 RD 426
D
Sbjct: 717 AD 718
>gi|293610712|ref|ZP_06693012.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827056|gb|EFF85421.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 721
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 48/272 (17%), Positives = 95/272 (34%), Gaps = 37/272 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
K+++LL++ + QV ++ I K++G + I + +
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502
Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
G G + F + L AL+
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYG 562
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
++ P + Q A +G Q Y+T ++S S + D + L TP++ G+
Sbjct: 563 EVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGK 622
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I +++ G T V + +G T++L G+ + + +P
Sbjct: 623 IQMKLDISKDSVS-GAAPNGELILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKVPF 681
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P +G LFR + + ++ E+ I TP +V
Sbjct: 682 FGDLPGIGRLFRKDQKSDDKQELLIFVTPRIV 713
>gi|254497667|ref|ZP_05110447.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii
LLAP12]
gi|254353104|gb|EET11859.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii
LLAP12]
Length = 652
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 50/249 (20%), Positives = 99/249 (39%), Gaps = 28/249 (11%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------- 233
++ L++ + QV ++ I EV +D + +G + ++ + A+
Sbjct: 407 LIKQLDVPVK-QVLIEARIVEVSKDFARDLGIRWGVSKPNHLSGTLQGANQMEQGTAPAN 465
Query: 234 ---------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
++ + D + L ALE ++ P L
Sbjct: 466 VNPYTQRLNLDLVAAPATGMTPASVGIALAKLGDNILLDLELSALESEGRAELISSPRLI 525
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
+ Q A SG + Y+ +SS GAT+V + L TP + +I + ++ +
Sbjct: 526 TTNQQPAVIDSGQEIPYQESTSS-GATAVAFKKAVLSLRVTPQITPDSKILMDLKIN-QD 583
Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
+P+ ++ T V + +G TIVL G+ + D + IP L ++P++G LF
Sbjct: 584 TASTQLFNGVPAILTKEIQTNVLVSNGQTIVLGGIYQQDKSRTITRIPFLGQLPVVGNLF 643
Query: 399 RNSRFNREE 407
RN++ +
Sbjct: 644 RNTQIVINK 652
>gi|325917654|ref|ZP_08179848.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
vesicatoria ATCC 35937]
gi|325536118|gb|EGD07920.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
vesicatoria ATCC 35937]
Length = 616
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 99/267 (37%), Gaps = 33/267 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------------SS 224
DQV ++ I + +G + I G +
Sbjct: 348 RPVDQVLIESRIVIATDTFARDLGARFGIAGRQQYGGNTGVISGSTTNNVSILNNGIHNV 407
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+F G + G + + F+ + L A++ ++ P + + +
Sbjct: 408 PGGLNFNLPAGTFTTNTAGAIAYTLLGRNFALDMELSAMQEEGRGEVVSNPRIVTSNQRE 467
Query: 285 ASFTSGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
G + Y T +S +V + + L TPT+ + R+ L + + E
Sbjct: 468 GVIKQGREIGYVTISGGGASGQSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 527
Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+N G +P R+ +T V + G T+V+ G+ + ++ +P L IP LG L
Sbjct: 528 RFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESIAKVPFLGDIPFLGNL 587
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAM 424
F+ ++E+ E+ + TP +++ +
Sbjct: 588 FKKRGRSKEKAELLVFVTPKVLRVASA 614
>gi|149189065|ref|ZP_01867353.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1]
gi|148837028|gb|EDL53977.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1]
Length = 538
Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats.
Identities = 62/301 (20%), Positives = 109/301 (36%), Gaps = 31/301 (10%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
++ G R++ + +A L+ R ++ +++ QV L+ I
Sbjct: 221 KLIGTGDGRSVVVTPQASLLTLRAYPDEIRQV------REFLDMSQQRLHRQVILEAKIL 274
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSFE 257
EV Q G S G++ G + V + FE
Sbjct: 275 EVTLSDGYQQGISWSNIGAAIGSGGVSISRPAQNPVPPLNQIGTLLGGQTNVTITDGHFE 334
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------TGATSV 307
VL + + L+ P +TA + Q + G + T S+ +
Sbjct: 335 AVLSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTDISTVIGSGENANVAPQVEL 394
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSY------RVRKADT 358
T G+ L TP + G + L + EV E + +R++D+
Sbjct: 395 TPFFSGISLDVTPQIDEKGNVLLHVHPAVIEVQEEKKEIEVLGDSIIVPLAKSSIRESDS 454
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ G +V+ GL+K ++ +P L IP LG LFRN++ E+TE+ I P +
Sbjct: 455 VIRAADGDVVVIGGLMKSATTEMVSKVPYLGDIPALGHLFRNTQNVTEKTELVILLRPTV 514
Query: 419 V 419
V
Sbjct: 515 V 515
>gi|260222239|emb|CBA31603.1| hypothetical protein Csp_D27950 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 711
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 55/265 (20%), Positives = 97/265 (36%), Gaps = 29/265 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
A QV ++ IAEV D + G Q + G++ G + S
Sbjct: 394 ARRAQVFVESLIAEVSADKAAEFGIQWQGALGNAGDSAIGVLGTNFGSAGSNIISLAAAG 453
Query: 239 VSEGGDFSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
S + + + + LE + L+ P L + + A G
Sbjct: 454 ASGTVSPAKGLNIGVANRTNGVYVLGFLARFLESTGSGNVLSTPNLLTLDNEEAKIVIGQ 513
Query: 292 QHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VI 341
+ T + ++ D G+ L P + G I L I EVS
Sbjct: 514 NVPFVTGQFTNTGSNGGSVNPFQTIERKDVGLTLKVKPQISENGTIKLAIYQEVSSVLAS 573
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
A + P+ R ++ V + G +VL GLL+D+ +E +P L+ +P G LF++
Sbjct: 574 TAGAANGPTTNKRTIESNVLVEDGAVVVLGGLLQDEYAGNQEKVPGLADVPWFGNLFKSE 633
Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426
+R++T + + P +V+
Sbjct: 634 SRSRKKTNLMVFLRPVVVRDATATQ 658
>gi|297570326|ref|YP_003691670.1| type II and III secretion system protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296926241|gb|ADH87051.1| type II and III secretion system protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 514
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 71/338 (21%), Positives = 122/338 (36%), Gaps = 35/338 (10%)
Query: 114 ILIERDIAHLEMTL-RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
++ + L + R+ + V + VV VR + + A L+
Sbjct: 164 VIRVMSVEDLRRQVERQGLYLEEEHVSPLQTRVV---PVRFSEPASLAESLTPMLSRDKE 220
Query: 173 RNQYANSSSKKVMNLLNIA------------------GEDQVTLKVTIAEVRRDILKQIG 214
N + + + L I QV ++ I E +++ +++G
Sbjct: 221 GNPRGSVTVDRHTRSLVIRDTAENLERLTSFLQEVDQATPQVLIEAHIIETNQEVARELG 280
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGG-----------DFSVKGVLDRFSFETVLHAL 263
Q A F + + G + E L AL
Sbjct: 281 VQWGSFWRGQQRVSDAAGGFTYQAGNPIGEQYSLDVLTGEVGFYTASVAGNILEMQLQAL 340
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
+R + L+ P++ + A SG + Y+++ G TSV D + L TP V+
Sbjct: 341 QREGKVNILSRPSVATLDNHEAVLESGTEVPYQSI--EDGTTSVQYKDAVLRLLVTPQVI 398
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
S I L+I+ + E + P + A T + + G T+V+AGL K+
Sbjct: 399 SRENIKLKIEAQKDEVDLTRTVMGNPFIIKKLAQTNLIVEDGSTVVIAGLAKERQASSST 458
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
G+PLL IP LG FR+ E E+ I TP ++
Sbjct: 459 GVPLLKNIPGLGVFFRSDARAGEFEELLIFITPRILSA 496
>gi|156975932|ref|YP_001446839.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116]
gi|156527526|gb|ABU72612.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116]
Length = 544
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 63/303 (20%), Positives = 111/303 (36%), Gaps = 29/303 (9%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
+L V + S + + T + + ++V L + + QV L+ I
Sbjct: 218 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDEIREVREFLGVSQERMQRQVILEAKI 277
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VLDRFSFE 257
EV Q G S +S G S S D + ++ G +FE
Sbjct: 278 LEVTLSDGYQQGINWSNMSASIGNSGSILVDRNPAKLPLDAIGTLLGGQTNVTFSDGNFE 337
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSV 307
V+ + + L+ P +TA + Q + G + T SS +
Sbjct: 338 AVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVEL 397
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKA 356
T G+ L TP + + G + L + V E + ++ +R++
Sbjct: 398 TPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQLNLGGDFQNIQLPLAKSSIRES 457
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
D+ + G +V+ GL+K + +P L +P LG LFRN ++TE+ I P
Sbjct: 458 DSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNVTQKTELVILLKP 517
Query: 417 FLV 419
+V
Sbjct: 518 TVV 520
>gi|269960458|ref|ZP_06174830.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834535|gb|EEZ88622.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 226
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS RI L
Sbjct: 1 MLAEPSLTALSGTQAEFVAGGEFPIPVP--NDDGITIDYKEYGVQLDFVPYILSDKRINL 58
Query: 331 RIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
++ VSE +P R A TT+EL G TI +AGLL ++ +
Sbjct: 59 KMNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLSENARN 118
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
+ +GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + +D
Sbjct: 119 VADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFVSPNDV 178
Query: 441 KAFFFNRVNKI 451
+ + + ++
Sbjct: 179 EFYLLGKGAEL 189
>gi|120553686|ref|YP_958037.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei
VT8]
gi|120323535|gb|ABM17850.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei
VT8]
Length = 572
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 58/306 (18%), Positives = 109/306 (35%), Gaps = 30/306 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--FV 239
+ + + + QV L+ I EV + Q G + SS+G + F + G
Sbjct: 273 ENYLRKTELIMQRQVVLEAKILEVGLNEGYQQGIDWNDVQSSAGRADYFTSQSLGGQQIR 332
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---- 295
+ + F ++ L + ++ L+ P ++ ++ Q A G +
Sbjct: 333 TPDIGGLFSATVSAGDFTGLIELLGQQGNVQILSSPRISTVNNQKAVIKVGTDEFFVTDI 392
Query: 296 ---------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
S++ + +T G+ L TP + G I L + VSE
Sbjct: 393 DFDDNNSAVTATDSTSTSVELTPFFSGISLDVTPQIAEDGAITLHVHPSVSEVADQEKVI 452
Query: 347 DM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ VR+ D+ + SG +V+ GL+++ + +P S+IP+LG L
Sbjct: 453 TIGERDVTLPLARSTVRETDSVIRAESGQIVVIGGLIQNSSEDNNSAVPFFSEIPLLGEL 512
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
F+ F ++E+ I +PV D S + +N K
Sbjct: 513 FKQRNFESRKSELVILL-----RPVVANAGQMQAD-VSASRERMNVLRELLNSSESVKPQ 566
Query: 458 SEVEGQ 463
E +
Sbjct: 567 PETAPR 572
>gi|195952458|ref|YP_002120748.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1]
gi|195932070|gb|ACG56770.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1]
Length = 660
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 59/327 (18%), Positives = 114/327 (34%), Gaps = 39/327 (11%)
Query: 132 ADSNIRVEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
+ NI V + ++ L + + S S + + NL+
Sbjct: 327 PNQNINVISSNKPIGSIYLS----------DGTRIGFDRATNSVILYATKSQYENLKNLI 376
Query: 189 NIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------FGGKF 238
E QV + ++ E G G + G + A+ G
Sbjct: 377 KKLDEKRIQVLIAASVVEANLTKQLTTGVNWQALGKNGGIGFNPASLQTIYQGLLSGNFV 436
Query: 239 VSEGGDFSVKGVLDR-----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
V S+ + L LE+ + ++ P + + + A +
Sbjct: 437 VGVTSSSSISANVGGNTIIFPDLAVFLSLLEQGNGFKIISNPKVLTLDNEEAIIKEAQVY 496
Query: 294 LYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVN 344
Y T + + D G+ L PTV + L+ T + +
Sbjct: 497 PYVTGTQYNINGFPILTYDYKDIGLELDVIPTVSKDNIRLGINLNLQDITGFTNTNVAGQ 556
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+P R ++ V + SG T++L GL+ ++ + GIP+L IP+LG LF+
Sbjct: 557 TVPIPITTDRVLNSEVVVKSGQTVILGGLVSNNTIKNISGIPILQDIPVLGNLFKYQNRE 616
Query: 405 REETEIFIAATPFLVKPVAMRDLSRPD 431
+++ +FI TP+++K + L++
Sbjct: 617 NKKSTLFIFITPYIIK--SPDQLAKIT 641
>gi|220921783|ref|YP_002497084.1| general secretion pathway protein D [Methylobacterium nodulans ORS
2060]
gi|219946389|gb|ACL56781.1| general secretion pathway protein D [Methylobacterium nodulans ORS
2060]
Length = 784
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 74/284 (26%), Positives = 130/284 (45%), Gaps = 19/284 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILK 211
R V +S + S + KKV L A QV + VTIAEVR +
Sbjct: 469 PGARGRGVAISADPANNSVITYADGDTYKKVYAALRRLDATPAQVAVNVTIAEVRLNDQL 528
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--------ETVLHAL 263
+ G Q+ + S G K+ + FG + G +V F+F + V+ AL
Sbjct: 529 KYGVQYFLDSSRIGLGKNKGS-FGLVSAAATGATNVLKPGAGFNFLVGGYSGPDVVISAL 587
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVL 316
+ T ++ L+ P+L + Q A+ G T + + V D G++L
Sbjct: 588 DGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQSIDYANAPLINQVEFRDTGIIL 647
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
+ P + + ++I+ E+S V G + P+ R+ +T+ + +G T++LAGL+ D
Sbjct: 648 NVIPRIGQNDAVTMQIEQEISAVVGGSDTLT-PTISKRRVASTISVANGQTVLLAGLISD 706
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
Q+ ++GIP L+++P +G LF ++ E TE+ + P +V+
Sbjct: 707 KHQRERDGIPFLNRLPQIGQLFSSTDNGAERTELVVFIRPVVVR 750
>gi|171318827|ref|ZP_02907964.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5]
gi|171095968|gb|EDT40901.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5]
Length = 775
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 55/275 (20%), Positives = 96/275 (34%), Gaps = 39/275 (14%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
V++ L+ QV ++ I E+ +G Q + + G
Sbjct: 393 SVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSIIN 451
Query: 236 ---------------GKFVSEGGDFSVKGVLDRF-------SFETVLHALERATAIRTLA 273
G S G S + +L + L+
Sbjct: 452 LTAGGVANAAGGITGGGLASNLGSLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLS 511
Query: 274 EPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
P L + + A G + ++S + D G+ LH P +
Sbjct: 512 TPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDG 571
Query: 326 GRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
G + L++ TE S NA P++ R +T+ +G IVL GL++D+ Q
Sbjct: 572 GILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSK 631
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+PLL IP +G LFR+ R++T + + P ++
Sbjct: 632 VPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 666
>gi|89901694|ref|YP_524165.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
gi|89346431|gb|ABD70634.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
Length = 710
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 41/264 (15%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS----------------------ITGSSSGPSKSFA 231
QV ++ I E K +G + G+S G + + +
Sbjct: 444 RQVLIEARIVEASDTFGKSLGVKLGGNDLRAQRGGDGGYQLSGDNRVAFGTSYGNAVASS 503
Query: 232 ADFG----------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
G G + S+ L ALE + ++ P
Sbjct: 504 GAGGVVDLTSNFVNLPAVGQGGYNPATFALSIFSSAANRFLNLELSALEADGKGKVVSSP 563
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ A G + Y+ V+SS+GAT++ + L TP + G I L +
Sbjct: 564 RVVTADQIKALIEQGTELPYQ-VASSSGATAIAFRKANLKLEVTPQITPEGNIILD--LD 620
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
V++ +G + + + T V + +GGT+V+ G+ + + +P L +P +G
Sbjct: 621 VNKDTVGQSTAAGFAINTKHIKTQVLVENGGTVVIGGIFELTESDNETKVPFLGDLPGVG 680
Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
LF+ + E+ + TP +V
Sbjct: 681 NLFKTRGRVSNKQEMLVFITPKVV 704
>gi|21244106|ref|NP_643688.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str.
306]
gi|21109733|gb|AAM38224.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str.
306]
Length = 633
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 45/263 (17%), Positives = 97/263 (36%), Gaps = 33/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------------SS 224
DQV ++ I + +G + I G +
Sbjct: 365 RPVDQVLIESRIVIATDTFARDLGARFGIAGRRQYGDNTAVISGSSTNNVSVINDGLHNV 424
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+F G + G + + F+ + L A++ ++ P + + +
Sbjct: 425 PSGLNFNLPAGTFTTNTAGSIAYTLLGRNFALDMELSAMQEEGRGEVVSNPRIVTANQRE 484
Query: 285 ASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
G + + + +V + + L TPT+ + R+ L + + E
Sbjct: 485 GVIKQGREIGYVTISGGGTGGQSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 544
Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+N G +P R+ +T V + G T+V+ G+ + + ++ +P L IP LG L
Sbjct: 545 RFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFNDRESVAKVPFLGDIPFLGNL 604
Query: 398 FRNSRFNREETEIFIAATPFLVK 420
F+ ++E+ E+ + TP +++
Sbjct: 605 FKKRGRSKEKAELLVFVTPKVLR 627
>gi|260428676|ref|ZP_05782654.1| general secretion pathway protein D [Citreicella sp. SE45]
gi|260420270|gb|EEX13522.1| general secretion pathway protein D [Citreicella sp. SE45]
Length = 320
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 13/274 (4%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQ 216
+ +++ + + +++ +L QV L+ TIAEV + +G +
Sbjct: 44 QTYKVAADTSRNALIVRATQEEHREITAMLRDLDTAARQVLLEATIAEVTLNDELNVGVR 103
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
S + G G +L R L+AL T ++ ++ PT
Sbjct: 104 WYFQNGDVATRFSDLENGGVAGNYPG----FSAILSRGGANVALNALAAVTDVKVISSPT 159
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGL 330
L + Q G Q +SS T V D G++L P + + G + L
Sbjct: 160 LMVVDNQEGLLQIGDQVPIARQTSSEANADAVVLTQVEYRDTGIILKVRPRIGADGAVNL 219
Query: 331 RIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+I+ EVS+ + D P+ RK T L G T+ L GL+++ + + +P L
Sbjct: 220 KIEQEVSDVSATRTSGIDSPTISTRKVSTHAVLADGQTLTLGGLVQERDNKTRAEVPGLG 279
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
++P++G LFR ++ TE+ I P +V A
Sbjct: 280 RVPVVGTLFRAKDNAKDRTELIIMIRPRVVHNAA 313
>gi|239814151|ref|YP_002943061.1| type IV pilus secretin PilQ [Variovorax paradoxus S110]
gi|239800728|gb|ACS17795.1| type IV pilus secretin PilQ [Variovorax paradoxus S110]
Length = 714
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 58/279 (20%), Positives = 103/279 (36%), Gaps = 41/279 (14%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------ 219
++ L+I QV ++ I E K +G +
Sbjct: 439 LIQKLDIPVR-QVLIEARIVEASDTFGKSLGVRLGGGISRERVASANGNPAYGTFGVMPV 497
Query: 220 -----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERA 266
++ + A G + G F++ S + ALE
Sbjct: 498 TTAAGGVGGATATWTNSNFINLPAGDAGGTGNAPGTFAISLFNSSLSRMLNLEISALEAD 557
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+ ++ P + A G + Y+ +SS GATS++ + L TP + G
Sbjct: 558 GKGKLVSSPRVITADQTKALIEQGEEIPYQQATSS-GATSISFRKAVLKLEVTPQITPEG 616
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L +VS+ GVN P+ + T V + +GGT+V+ G+ + + +P
Sbjct: 617 NIIL--TLDVSKDARGVNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRVP 674
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+L ++P LGALFR +TE+ + TP ++
Sbjct: 675 VLGEVPYLGALFRKRERVANKTEMLVFITPKMITDRNAA 713
>gi|253701597|ref|YP_003022786.1| type II and III secretion system protein [Geobacter sp. M21]
gi|251776447|gb|ACT19028.1| type II and III secretion system protein [Geobacter sp. M21]
Length = 870
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 75/422 (17%), Positives = 151/422 (35%), Gaps = 74/422 (17%)
Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
D + + T+ ++ K + + + L L + D +R + I
Sbjct: 241 LDKKILNESTIIIYPKTPDK-----VKQYEELFLQTFYLNKLDAKKAVNLVRTMLQVKKI 295
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
V ++ +VL D +E++ L + V
Sbjct: 296 YVNEEANALVLR-------DKPEVIEVARKILEANDVPDAE------------------V 330
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242
L+V + E+ + + G S +S G + + G F+++
Sbjct: 331 LLEVEVFELSKQNAETFGLLLSRYATSMGVTGPGSTSGGSPFLADTLGAVTTTTTGTGTA 390
Query: 243 ----------GDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
F+++G + + + + TL+ P + + + A F G
Sbjct: 391 TTSAQPSNLLNVFNLRGYNGYLTVPNATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGT 450
Query: 292 QHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGV 343
+ T SS + +V D GV ++ PT+ + +++ EVS +
Sbjct: 451 RVPITTTSSPSGGGVSVNVQYVDVGVKVNAEPTIQLNNEVAIKLGLEVSSILNEKTIGTD 510
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
A + + R DT + L G T ++ GL++ K + LL IPI+G LF N+
Sbjct: 511 QATTVVTIGTRNLDTVLSLKDGETSIIGGLIQKTQTDSKNKVFLLGDIPIIGPLFSNTSD 570
Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
+++TE+ +A TP +V+ V ++D AF+ R ++ + S
Sbjct: 571 KKDKTELLLAITPRIVRGV-----------TVPDNDVAAFWSGREDEPSSHQPYSSFMEP 619
Query: 464 NY 465
++
Sbjct: 620 DF 621
>gi|167834842|ref|ZP_02461725.1| general secretion pathway protein D [Burkholderia thailandensis
MSMB43]
Length = 749
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 103/295 (34%), Gaps = 36/295 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ I E+ + +G Q +
Sbjct: 365 IQADAATNSLIITASDPVYRNLRAVIDQLDFR-RAQVYIEALIVELNSNTAGNLGIQWQV 423
Query: 220 TGS-----------------------SSGPSKSFAADFGGKFVSEGGDFSVK---GVLDR 253
++G S A S +V +
Sbjct: 424 ASGALLAGTNLAATAGTIAGNSIINLTAGNGTSTGAGVAANLASLNQGLNVGWLHNMFGV 483
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----- 308
+L + L+ P L + + A G T S S + T
Sbjct: 484 QGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTNNAFN 543
Query: 309 ---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPS 364
D G+ LH P + G + L++ TE S NA PS+ R +T+ +
Sbjct: 544 TYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVETSTQNAVTGPSFTKRSIQSTILADN 603
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G IVL GL++D Q +PLL IP LG LFR+ R++T + + P ++
Sbjct: 604 GEIIVLGGLMQDSYQVANSKVPLLGDIPWLGQLFRSESKQRKKTNLMVFLRPVII 658
>gi|262401512|ref|ZP_06078079.1| MSHA biogenesis protein MshL [Vibrio sp. RC586]
gi|262352227|gb|EEZ01356.1| MSHA biogenesis protein MshL [Vibrio sp. RC586]
Length = 556
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 58/263 (22%), Positives = 96/263 (36%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
QV L+ I EV Q G + +S+G + K S +V
Sbjct: 270 RMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISKDASGNPISAVLPG 329
Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 330 LDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEFY 389
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
T SS + ++T G+ L TP + G + L + V E
Sbjct: 390 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 449
Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 450 IVYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 509
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 510 LFRNTTKLTQKTELVILLKPTVV 532
>gi|258627001|ref|ZP_05721799.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603]
gi|262172506|ref|ZP_06040184.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451]
gi|258580675|gb|EEW05626.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603]
gi|261893582|gb|EEY39568.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451]
Length = 558
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 57/263 (21%), Positives = 97/263 (36%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
QV L+ I EV Q G + +S+G + + + S +V
Sbjct: 272 RMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGSGTISQDSSGNPISAVLPG 331
Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 332 LDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 391
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
T SS + ++T G+ L TP + G + L + V E
Sbjct: 392 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKR 451
Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 452 ITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 511
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 512 LFRNTTKLTQKTELVILLKPTVV 534
>gi|326794354|ref|YP_004312174.1| type III secretion outer membrane pore, YscC/HrcC family
[Marinomonas mediterranea MMB-1]
gi|326545118|gb|ADZ90338.1| type III secretion outer membrane pore, YscC/HrcC family
[Marinomonas mediterranea MMB-1]
Length = 713
Score = 163 bits (412), Expect = 7e-38, Method: Composition-based stats.
Identities = 46/227 (20%), Positives = 83/227 (36%), Gaps = 9/227 (3%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ + I ++ R+ L ++GF SG +++ G + G + + D
Sbjct: 329 IEIDAIILDIDREKLSELGFNWQ---GGSGNTEAKINTSGADPFLKSGSSATVTIQDFDH 385
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
F + ALE +A P++ I Q A K+ +V+ G
Sbjct: 386 FFAQIRALETDGDASLVANPSILTIENQPAIIDFNNTAFIKST--GERVANVSEITAGTS 443
Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
L P ++ I L + E + + D PS T + + ++V+ G
Sbjct: 444 LQVLPRLIDSEAERVIQLFLDIEDGDI-ESNSGADTPSVSKGSISTQAVIKTERSLVIGG 502
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ Q + +PLL +P +G LF + + E TP LV
Sbjct: 503 FKVEQNTQRESKVPLLGDLPGIGKLFSYTSKAHSKRERLFIITPRLV 549
>gi|258623356|ref|ZP_05718360.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573]
gi|258584322|gb|EEW09067.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573]
Length = 554
Score = 163 bits (412), Expect = 7e-38, Method: Composition-based stats.
Identities = 57/263 (21%), Positives = 96/263 (36%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
QV L+ I EV Q G + +S+G + + S +V
Sbjct: 268 RMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISQDSSGNPISAVLPG 327
Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 328 LDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 387
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
T SS + ++T G+ L TP + G + L + V E
Sbjct: 388 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKR 447
Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 448 ITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 507
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 508 LFRNTTKLTQKTELVILLKPTVV 530
>gi|119475553|ref|ZP_01615906.1| Type II secretory pathway, component PulD [marine gamma
proteobacterium HTCC2143]
gi|119451756|gb|EAW32989.1| Type II secretory pathway, component PulD [marine gamma
proteobacterium HTCC2143]
Length = 558
Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 63/303 (20%), Positives = 112/303 (36%), Gaps = 26/303 (8%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
VL G ++ +R + + + ++++ +N + QV L+ I EV
Sbjct: 231 VLVGT----EEGRRVIVTPQAGIIIVRAMPAEIDAAREFLNRAEVIMRRQVVLEAKILEV 286
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHAL 263
+ Q G Q G + + G VS + F V+ L
Sbjct: 287 ELNDGYQTGIQWESMGGTLNGNTLDFGVSGSSPVSSNSVGGAFSAVYESVGDFSGVIELL 346
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----------TGATSVTTHDY 312
E +++ L+ P ++ ++ Q A G + T S+ +T
Sbjct: 347 ETQGSVQVLSSPRISTVNNQKAVIKVGTDEFFVTEISNSTTTSTGATTSNPEIELTPFFS 406
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE-------PVIGVNAGDMPS--YRVRKADTTVELP 363
G+ L TP + I L I +SE +G ++P +R+ D+ V
Sbjct: 407 GIALDVTPQISDNDEIILHIHPSISEVRDQTKVITLGDQTVEVPLALSTIRETDSIVYAR 466
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
SG +VL GL++ G P+L +P +G LF R + E+ I P ++ P
Sbjct: 467 SGQVVVLGGLMQTKSVDNNSGTPVLGNLPGVGHLFSQQRNKTVKNELVILLRPVIMGPSG 526
Query: 424 MRD 426
+ D
Sbjct: 527 LPD 529
>gi|167584994|ref|ZP_02377382.1| general secretion pathway protein D [Burkholderia ubonensis Bu]
Length = 777
Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 49/297 (16%), Positives = 100/297 (33%), Gaps = 38/297 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + V++ L+ QV ++ + E++ +G Q +
Sbjct: 368 IQADAATNSLIITAPDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSGNLGIQWQV 426
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS-------------------------VKGVLDRF 254
++ + + G ++ +
Sbjct: 427 ANNALFAGTNLPSGASISGAGLGNSIIDLTGRAATSPLTAVSALTPGLNIGWLRNMFGVQ 486
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATS 306
+L ++ L+ P L + + A G T + +
Sbjct: 487 GLGALLQYFAGSSDANVLSTPNLITLDNEEAKIVVGQNVPIPTGSYSNLTSGTGGNAFNT 546
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTE----VSEPVIGVNAGDMPSYRVRKADTTVEL 362
D G+ LH P + G + +++ TE V V P++ R +TV
Sbjct: 547 YDRRDVGLTLHVKPQITDGGILKMQLYTEDSSVVQSTVSTSANSPGPTFNKRSIQSTVLA 606
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G IVL GL++D+ +PLL IP +G LFR+ +R++T + + P ++
Sbjct: 607 DNGEIIVLGGLMQDNYNTSNSKVPLLGDIPWIGQLFRSESKSRQKTNLMVFLRPVII 663
>gi|254254052|ref|ZP_04947369.1| Type II secretory pathway component HofQ [Burkholderia dolosa
AUO158]
gi|124898697|gb|EAY70540.1| Type II secretory pathway component HofQ [Burkholderia dolosa
AUO158]
Length = 735
Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 78/461 (16%), Positives = 156/461 (33%), Gaps = 60/461 (13%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
MR QR + + P ++ I + ++ ++ +
Sbjct: 185 MRASQRRQ------SVRPQLSDALRKPVSLNFKQQPMSNIFDVISRVSGVNFVFDRDVDT 238
Query: 61 QVPVD-VQDVLVSDPTK--------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ--- 108
P + + + V T+ ++
Sbjct: 239 SQPATLFAERTTAQDAINLLLRTNQLEKKVLDKHTLLVYPSQP--------DKRRNYTEF 290
Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
+ L D + LR+ I ++ V+ + +VL T+Q +
Sbjct: 291 AVRTFFLSHADAKSVMAALRQIIKPKDVYVDERVNAIVLRDTPDTVQVA----------- 339
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
++V+ L+I + VTL V + EV + +G Q+ S +
Sbjct: 340 -------------ERVVMGLDIPQSE-VTLDVQVLEVNMNDSLDLGVQYPGKLQFSALAG 385
Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+ + + + + + L++ RTLA P + + + AS
Sbjct: 386 ADGGALTLGDLLRLNRDRIGVSSESGALSMAIDLLQKQGKTRTLANPKIRVRNMEKASIK 445
Query: 289 SGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGV 343
G + T +++ G SV+ D G++L P + + +++ EVS
Sbjct: 446 IGERVPIVTTTNANGVVTESVSYQDVGLMLKVEPRISLDDEVSVKVNMEVSSILSKETTK 505
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
S R A+T + +G T +LAGL+K + G+P +S +PI+G LF +
Sbjct: 506 TGLVAYSLGTRNAETLMTARNGQTQILAGLVKRNETDNASGLPGVSGLPIVGRLFGSHGR 565
Query: 404 NREETEIFIAATPFLVK----PVAMRDLSRPDDHYSVEDDA 440
+ + +EI + TP + + P++ V DA
Sbjct: 566 SHDRSEIVLLITPHIERNLDLPMSAVTTFLSGTETRVTTDA 606
>gi|124514518|gb|EAY56031.1| putative type II secretion system protein D [Leptospirillum
rubarum]
Length = 610
Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 62/365 (16%), Positives = 117/365 (32%), Gaps = 47/365 (12%)
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+E TLR+ I + + + + TV + G V+ + +QR +++ L
Sbjct: 271 DKMEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIVRDQL------------ 318
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAADFGGKFV 239
+V ++ IAE+ G + + + G
Sbjct: 319 ------------RREVFFRIDIAEIDLTDKDAYGINWNALAHGVFNSTLALTGAGAGNAG 366
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
F V+ ALE + + +P + +SGQ S + Y
Sbjct: 367 LASTGGVTTPYGASFGSAAVIQALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQGE 426
Query: 300 S----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------G 342
+ + G+ L TPT L ++ + V+ G
Sbjct: 427 YPFFAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQVHMHGTVVVNSLQQFVTIDIKG 485
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ P R T + G T+V+ GL+ + + +P L +IP+L LF
Sbjct: 486 IGTFQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWSVPFLGQIPVLKWLFSGYS 545
Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP-DDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
+ ++ TE+ + TP + + LS P + D ++ + V
Sbjct: 546 YKKQVTELVVIITPEIRR---TPRLSSPRTGDFLNPDSPVYRKSLPGSRPFSVPRLPRVP 602
Query: 462 GQNYK 466
G
Sbjct: 603 GYGSN 607
>gi|288818949|ref|YP_003433297.1| putative type IV pilus biogenesis protein [Hydrogenobacter
thermophilus TK-6]
gi|288788349|dbj|BAI70096.1| putative type IV pilus biogenesis protein [Hydrogenobacter
thermophilus TK-6]
gi|308752535|gb|ADO46018.1| type II and III secretion system protein [Hydrogenobacter
thermophilus TK-6]
Length = 592
Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats.
Identities = 61/264 (23%), Positives = 105/264 (39%), Gaps = 38/264 (14%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS----------ITGSSSGPSKSFAADFGGKFV--- 239
QV ++ I EVR L+++G + +G + +
Sbjct: 330 PVQVKIEARIVEVREQALRELGINWNVLLSQARVPQFWQGGAGQGANIGVAPAPGTIFVP 389
Query: 240 --------------------SEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLT 278
+ GG F+ + L ALER I+ +A+PT+
Sbjct: 390 PDPTSVGPRSPIYYTPGLSQTPGGIFAFSYQKGMLNALNLRLSALERIAMIKNIAKPTVV 449
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
++ Q A+ G Q Y+T + GA ++ D + L TP V GRI L +
Sbjct: 450 TVNAQKATIKQGVQIPYQTTVVAGGAQAANIQFKDVVLQLDVTPVVSPDGRILLD--INL 507
Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
G P+ ++A T V + G T+V+ G++ + + EG+P L ++P+L
Sbjct: 508 KRDTPGEQTPQGPAINTKEASTKVVVNDGDTLVIGGIIDNQETKTNEGLPGLVRVPVLKW 567
Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
LF + ++E+ I TP LV+
Sbjct: 568 LFGQESSQKIQSELLIFLTPVLVR 591
>gi|15642863|ref|NP_227904.1| comE protein, putative [Thermotoga maritima MSB8]
gi|4980577|gb|AAD35182.1|AE001695_8 comE protein, putative [Thermotoga maritima MSB8]
Length = 1285
Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats.
Identities = 74/395 (18%), Positives = 149/395 (37%), Gaps = 45/395 (11%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---DVVVHSPRTMY 88
A A + EI IS+ V + + + + A + + S Y
Sbjct: 931 AEDAPLYDLLEEIASELGISVMF-------VSIPSEKITMKADNVAWEKFIDLISQNYGY 983
Query: 89 LFGKNVGQANVILIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
LF G V ++ + + + + ++ + + V+ +++ +V+
Sbjct: 984 LFDNKNG---VYVVSKPKQDLARRYIYDVPHNFDQIKALIE--FYGGTVYVDSLNNFMVV 1038
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G+ TI ++ L Q+ + I V R
Sbjct: 1039 TGISETI-----------------------KRELDNIIEKLK-KPTKQIEISAKI--VDR 1072
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERA 266
++ ++ + + + + + V++ DF + G + + +
Sbjct: 1073 SLIDRLSKETGLELTGENVNVGSSGAEISFSVTDYLDFEKIFGEILNNTLSLQFSDQKTN 1132
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
T LA P + SG+ A G + Y T ++ G V + G+ L TP V S
Sbjct: 1133 TLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDD 1192
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L + + SEP +N ++P R R+A T + + +G TI + GL+++ + +P
Sbjct: 1193 TIELDLFVKASEPGNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLP 1250
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
L +P++G FR N+E+ ++ I T +V+P
Sbjct: 1251 FLGDLPVIGQFFRTKSENKEKRDLVIFLTVRVVEP 1285
>gi|119773594|ref|YP_926334.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B]
gi|119766094|gb|ABL98664.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B]
Length = 561
Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats.
Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 26/252 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGKFVSEGGDFS 246
QV L+ + EV Q G Q + G++ + A + G +S
Sbjct: 286 RQVILEAKVLEVTLSDGYQQGIQWNKIAGSALADGNTKINFATSAGNEFGNQISSALGGV 345
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---- 302
+ F+ +++ L+ + L+ P +TA + Q A G + T SST
Sbjct: 346 TSLSIIGSDFDAMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGKDEYFVTDVSSTTVAG 405
Query: 303 ------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---------D 347
+T G+ L TP + G + L + V +
Sbjct: 406 TTPVTSPEVELTPFFSGIALDVTPQIDGQGNVLLHVHPSVIDVKEQTKTIKISNSDLELP 465
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ +R++DT ++ SG +V+ GL+K + +L +PLL IP LG F N + +
Sbjct: 466 LAQSEIRESDTVIKAMSGDVVVIGGLMKSESLELVSKVPLLGDIPFLGEAFTNRSQSVRK 525
Query: 408 TEIFIAATPFLV 419
TE+ I P +V
Sbjct: 526 TELVILLKPTVV 537
>gi|262164147|ref|ZP_06031886.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223]
gi|262027675|gb|EEY46341.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223]
Length = 558
Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats.
Identities = 57/263 (21%), Positives = 96/263 (36%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
QV L+ I EV Q G + +S+G + + S +V
Sbjct: 272 RMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISQDSSGNPISAVLPG 331
Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 332 LDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 391
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
T SS + ++T G+ L TP + G + L + V E
Sbjct: 392 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKR 451
Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 452 ITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 511
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 512 LFRNTTKLTQKTELVILLKPTVV 534
>gi|288572884|ref|ZP_06391241.1| general secretion pathway protein D [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568625|gb|EFC90182.1| general secretion pathway protein D [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 659
Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats.
Identities = 87/514 (16%), Positives = 161/514 (31%), Gaps = 85/514 (16%)
Query: 20 NPSVAKLPPIKEANAAVINISDVE------IGKGKKISIGLNKVIILQVPVDVQDVLV-- 71
+P A+ A V+ I E G + +N + L VP ++ +
Sbjct: 160 SPGFAQKAVQPAAGKTVMVIPLDEGNGLLLTGPAADVQRVVNLLRALDVPDGIRRISAVP 219
Query: 72 ---SDPTKADVVVHSPRTMYLFGKNV-----GQANVILIGHDGKQMLNLDILIERDIAHL 123
++P + + K+ G + L ++ +
Sbjct: 220 VKEANPDLL------AQHLANLAKDPTGPFRGLTAL-----SDSSSRTLLLVGDSSALES 268
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ + + + E + + + + ++
Sbjct: 269 AKKIVKRLDVPPVSGEFHVYRLKNADAQEVAKQLSQILGVAARLQPGKEGAMPTTVVPDI 328
Query: 184 VMNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
N L A QV ++ IAEV LK G + G
Sbjct: 329 PTNSLIFAVQEQQYAGLIDIIKQLDIQPKQVMVRGLIAEVNLTNLKNAGIDWATWGGQVS 388
Query: 226 PSKSFAADFGGKFVSEGGDFSV---------------------------KGVLDRFSFET 258
S FAA+ + V
Sbjct: 389 GSTVFAANAALGGSTGVPSTFVDWFQDLSKKETYEWITPETGEPYREKTTVYEGNSLIYA 448
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------GATSVTTHDY 312
+ L++ A+ L+ P L + +S G S+S S D
Sbjct: 449 YVQLLKKYDAMNILSMPRLMCTDNKESSLMVGQTIPQMKASTSDISNPSSVQNSYDYKDT 508
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
G+ L TP + S + L I+ +E V+ P R+ T+V++ +G TI+L G
Sbjct: 509 GLKLKITPHIRSGNLVALDIEQS-TEEVLSAMTSTTPVTAKREVKTSVQVRNGETIILGG 567
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
LLK+ + LK+ +P+LS IP++G LF++S RE+ E+ + TP++ + + +
Sbjct: 568 LLKETEKSLKQRVPILSYIPLVGELFKSSTNQREKIELMVFLTPYI---LETPEAATEAS 624
Query: 433 HYSVEDDAKAFFFN---RVNKIYGPKEASEVEGQ 463
D R+N+ + V+ Q
Sbjct: 625 KAVAASDTDLGLSEAEIRLNRRFQEMYREAVKKQ 658
>gi|94266027|ref|ZP_01289748.1| type II and III secretion system protein [delta proteobacterium
MLMS-1]
gi|93453422|gb|EAT03844.1| type II and III secretion system protein [delta proteobacterium
MLMS-1]
Length = 577
Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats.
Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 19/257 (7%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
++ ++ L QV ++ I EV + G + S G + +
Sbjct: 321 EEYLDNLQQQLFRQVIIEAKIIEVTLSDEHRSGIDWTNVLSGKQLDFELFGPDGIIYHPD 380
Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G + + FE +L A+E L+ P ++ ++GQ A G Y
Sbjct: 381 RDQRGRGVSQISIGPNPFELLLEAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAE 440
Query: 299 SSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--------- 342
+SST T G+ + P ++ I L + ++ G
Sbjct: 441 ASSTIQDQGVTHNIITGTVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGD 500
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+P +R+ T V + +G T+++ GL+ + + +PLL IP LG LFR+
Sbjct: 501 NMLVQLPQINIREMQTMVRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDT 560
Query: 403 FNREETEIFIAATPFLV 419
++E+ E+ I P ++
Sbjct: 561 RSKEKKELVIMLRPRIL 577
>gi|291613156|ref|YP_003523313.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans
lithotrophicus ES-1]
gi|291583268|gb|ADE10926.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans
lithotrophicus ES-1]
Length = 614
Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats.
Identities = 59/328 (17%), Positives = 124/328 (37%), Gaps = 44/328 (13%)
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK------VMNLLNIAGE 193
S + T+Q + + ++ +++++ ++ + A
Sbjct: 260 TGSGNEDVSSQASTVQQTGKYEPAVNVNANKETGVLIVRATARQHKKIQEFIDKVMTAAR 319
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV ++ TIAEV Q G S G S G +
Sbjct: 320 RQVLIEATIAEVTLSRNYQQGINWSALALGGKGFSLTQLATAGLPSSNTGSMVTLAYNNA 379
Query: 254 F----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT- 308
+ + L+ ++ L+ P L+ ++ Q+A+ +Y T++ + G+T+ T
Sbjct: 380 TSKVGNLSGAVQLLDSFGDVKVLSSPKLSVMNNQTATLKVVDNKVYFTITVTPGSTNGTI 439
Query: 309 -----------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------------- 344
G ++ TP + + + ++ ++ + VN
Sbjct: 440 VTPPTFSTTAVPVAVGFTMNVTPEINDSDYVTINVRPTITRIIDYVNDPNPNLANPCGTG 499
Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+P R R+ ++ + + SG VL GL++D+I +G+PLL +IP +G
Sbjct: 500 VTSCAVAAIVNRVPEIRTREMESIIRVSSGQIAVLGGLMQDEINNQSDGVPLLDEIPGIG 559
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA 423
+LF+N + +TE+ I P ++K +
Sbjct: 560 SLFKNRNDTKTKTELVIFLRPVIIKDAS 587
>gi|157963580|ref|YP_001503614.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC
700345]
gi|157848580|gb|ABV89079.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC
700345]
Length = 556
Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 94/249 (37%), Gaps = 23/249 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
QV L+ + EV Q G +G + + + ++ GV
Sbjct: 284 RQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDISFGTSPAAGLGDTITNALGGVTSI 343
Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----------TVS 299
F T++ L+ + L+ P +TA + Q A G +
Sbjct: 344 KLEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGNTP 403
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------- 352
+T +T G+ L TP + G + L I V + V + +
Sbjct: 404 VTTPEVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQVKSIKIADSTLELPLAQ 463
Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R++DT ++ SG +V+ GL+K + +L +PLL IP LG F N + +TE+
Sbjct: 464 SEIRESDTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPFLGEAFTNRANSTVKTEL 523
Query: 411 FIAATPFLV 419
I P +V
Sbjct: 524 VILLKPIVV 532
>gi|134294193|ref|YP_001117928.1| general secretion pathway protein D [Burkholderia vietnamiensis G4]
gi|134137350|gb|ABO53093.1| general secretion pathway protein D [Burkholderia vietnamiensis G4]
Length = 774
Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats.
Identities = 53/293 (18%), Positives = 102/293 (34%), Gaps = 34/293 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ I E+ +G Q +
Sbjct: 375 IQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQV 433
Query: 220 TGSSSGPSKSFAADFG------------GKFVSEGGDFSVKGVLDRFS------------ 255
+ G + G ++ + +
Sbjct: 434 ASGQFLGGTNLNPTSGLGNSIVNLTAGTAGATTPGLAANLGTLTQGLNIGWLHNLFGVQS 493
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSV 307
+L + L+ P L + + A G + ++S +
Sbjct: 494 LGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYLNLTSGTTSNAFNTY 553
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGG 366
D G+ LH P + G + L++ TE S V +A P++ R +T+ +G
Sbjct: 554 DRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVAGTTSAQTGPTFTKRSIQSTILADNGE 613
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IVL GL++D+ Q +PLL IP +G LFR+ R +T + + P ++
Sbjct: 614 IIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRAKTNLMVFLRPVII 666
>gi|253996449|ref|YP_003048513.1| type II and III secretion system protein [Methylotenera mobilis
JLW8]
gi|253983128|gb|ACT47986.1| type II and III secretion system protein [Methylotenera mobilis
JLW8]
Length = 659
Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats.
Identities = 78/425 (18%), Positives = 157/425 (36%), Gaps = 51/425 (12%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-- 79
S K P E + IGK I+ ++ + + V D D
Sbjct: 188 SAFKKPITLEFKNVSVRSVFEFIGKAANINFSYDQELR---DNQRTSIFVRDTPIEDAIQ 244
Query: 80 VVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAHLEMT-----LRRFIAD 133
V+ + + K V +++ Q + + ++ ++ +
Sbjct: 245 VILTTNQL---AKKVLNDNTLLIYPVSRSQEYQELYVRSFYLNSIDAKRAMNLIKTVLKS 301
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
++ ++ +T+V+ +I E++E ++ +
Sbjct: 302 KDVYIDEKLNTLVMRDTAESI-------EIAEKLIASQDLIEPE---------------- 338
Query: 194 DQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
V L+V + E+ R L+ IG ++ + G +S S S
Sbjct: 339 --VMLEVEVMEINRRSLENIGVRYPSQVSVGVQGKTSSNGVSTNTPGRLSLAELKNFNSG 396
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---A 304
GV L+ L + T LA P + + + A G + T +++ +
Sbjct: 397 LGVFTISDPVLALNLLHQDTDTNLLANPQIRVKNREKAKIHVGDKIPVFTSVANSTGFVS 456
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVE 361
+V + G+ L PT+L ++ +++ EVS + R A+TT++
Sbjct: 457 QTVNYLEVGIKLDVEPTILLQDQVNIKVGLEVSNITDQVKTDTGVLAYTIGSRNANTTLQ 516
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
L +G T +LAGL +DD Q + +P LS +P +G LF + ++ + EI + TP ++
Sbjct: 517 LKNGETQILAGLFRDDGQNISNKVPGLSSLPFIGRLFTDKNNDKRKNEIVLLITPRILHN 576
Query: 422 VAMRD 426
+A +
Sbjct: 577 IAPAN 581
>gi|298529582|ref|ZP_07016985.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511018|gb|EFI34921.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans
ASO3-1]
Length = 569
Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats.
Identities = 55/264 (20%), Positives = 99/264 (37%), Gaps = 14/264 (5%)
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+++ + + + S +++ L++ E QV ++ + +++G
Sbjct: 312 RVTQDARTNTLIVRDTPSQLEEITQLIDNLDRPERQVLIEARVVYATESFRRELGVDWGF 371
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-----RFSFETVLHALERATAIRTLAE 274
S G + + F S+ G + E L E T++
Sbjct: 372 AYQSPGLDSNIISPDTFNFPSDLEGLLGVGYMGHEGQSFSVLEARLRLGESQGKSNTISA 431
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P + ++ Q A G + V + T + L TP + + L
Sbjct: 432 PQIMTLNNQEAKIE-QGTDVAVDVIDADLRTRREYVPATLELIVTPQITPDNNLIL--NL 488
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
EVS+ G V+KA+TT+ G TIV+ G+ K Q + GIP LS++PIL
Sbjct: 489 EVSDNAPGEGGN----IEVKKAETTLFAEDGETIVIGGIKKLSESQRETGIPPLSRLPIL 544
Query: 395 GALFRNSRFNREETEIFIAATPFL 418
G LF++ E+ I P +
Sbjct: 545 GWLFKHELVEENMDELLIFIRPKI 568
>gi|288942750|ref|YP_003444990.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180]
gi|288898122|gb|ADC63958.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180]
Length = 787
Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats.
Identities = 55/285 (19%), Positives = 106/285 (37%), Gaps = 49/285 (17%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
+V+NLL++A QV ++ + + +G + ++GS
Sbjct: 499 RVVNLLDVAVR-QVMIESRVVIANNSFARDLGVRFGVSGSMGKVGDNEVLIGGGQNGYLA 557
Query: 224 --------SGPSKSFAADFGGKFVSEGGDFSVK--------------------GVLDRFS 255
G + S + + G+ ++ G + +
Sbjct: 558 VGDYDSGPFGLNASTGTPYNSTLTDDAGNATLITNLPATTIQDAASGSIDFLIGKVGSYL 617
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
+ L A++R ++ P + A+ G + Y+ S G TS+ + +
Sbjct: 618 IQLELSAMQREGRGEIISSPRVITADKNKATIKVGSEIPYQ-EQSGQGNTSIAFKEAVLQ 676
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
L TP + RI + ++ P + + P R T V + +G T+VL G+ +
Sbjct: 677 LDVTPQITPDDRIIMDLEVRKDRPDWSRSINNTPPIDTRSVKTNVVIDNGETVVLGGVFE 736
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ KE +P L +P+LG LF+ TE+ I TP ++K
Sbjct: 737 REKTFSKEQVPWLGDVPVLGRLFKQEARQDSNTELLIFVTPKILK 781
>gi|154249944|ref|YP_001410769.1| type II and III secretion system protein [Fervidobacterium nodosum
Rt17-B1]
gi|154153880|gb|ABS61112.1| type II and III secretion system protein [Fervidobacterium nodosum
Rt17-B1]
Length = 1519
Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats.
Identities = 55/239 (23%), Positives = 90/239 (37%), Gaps = 9/239 (3%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
V++ I + R+ + + S + + +
Sbjct: 1277 TTPKIVSIDARIIDESRNGSLSEEIVTLLKAGNYLTFGSNGLTLNVSLLDILDGSIIDKI 1336
Query: 251 LDRFSFETVLHALER-------ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
L+ L E+ + + LA P + SG+ A G K VS+S G
Sbjct: 1337 LNEAGISLDLRGAEQGTPFRATSGIGKLLANPNIMTKSGEEARIFIGDSIPLKIVSTSGG 1396
Query: 304 ATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
T+ G+ L P V + I L I T VS V +P R A T +
Sbjct: 1397 QTNEQVISLEGGIELKIVPYVNADNTIDLVITTSVSNFDYSVLVNGLPKINKRDASTKIT 1456
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G T+V+ GL +++ + + +P+L IPILG LFR ++ E+ I I T +V
Sbjct: 1457 IKDGQTLVIGGLSREEKSKSEWKVPILGDIPILGYLFRGTKEASEQRSITIFLTAKIVD 1515
>gi|94266705|ref|ZP_01290378.1| type II and III secretion system protein [delta proteobacterium
MLMS-1]
gi|93452646|gb|EAT03209.1| type II and III secretion system protein [delta proteobacterium
MLMS-1]
Length = 577
Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats.
Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 19/257 (7%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
++ ++ L QV ++ I EV + G + S G + +
Sbjct: 321 EEYLDNLQQQLFRQVIIEAKIIEVTLSDEHRSGIDWTNVLSGKQLDFELFGPDGIIYHPD 380
Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G + + FE +L A+E L+ P ++ ++GQ A G Y
Sbjct: 381 RDQRGRGVSQISIGPNPFELLLDAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAE 440
Query: 299 SSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--------- 342
+SST T G+ + P ++ I L + ++ G
Sbjct: 441 ASSTIQDQGVTHNIITGTVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGD 500
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+P +R+ T V + +G T+++ GL+ + + +PLL IP LG LFR+
Sbjct: 501 NMLVQLPQINIREMQTMVRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDT 560
Query: 403 FNREETEIFIAATPFLV 419
++E+ E+ I P ++
Sbjct: 561 RSKEKKELVIMLRPRIL 577
>gi|224373284|ref|YP_002607656.1| general secretory pathway protein D [Nautilia profundicola AmH]
gi|223589728|gb|ACM93464.1| general secretory pathway protein D [Nautilia profundicola AmH]
Length = 445
Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats.
Identities = 54/261 (20%), Positives = 93/261 (35%), Gaps = 19/261 (7%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ + K +N + +V + V I V + G S +
Sbjct: 174 TGTKKQIDAIDKYINTMLNRLTKEVLIDVKIYTVELSKSHKTGIDWSQLSIQLNRTDVPL 233
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
+ G FS +L+ L + + +L+ P + ++ Q A + G
Sbjct: 234 RG------TYIGGAQSVFSDATFSVVGLLNFLAQNGNVNSLSNPKVVTLNNQKAIISVGD 287
Query: 292 QHLYKTVSSSTGATS--------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---- 339
YK S T + + + GVVL TP + G I L I +S
Sbjct: 288 TIYYKYASKVTTDQNGNPNTEYTIDSKFVGVVLDITPQISDNGDIILSIAPRISAFKDLT 347
Query: 340 VIGVNAGDMPSYRVRKAD-TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
+ DMP + V+L T+VL GL+ +D G+P+L +IP++ LF
Sbjct: 348 QLSNTTRDMPPDTKDNTMLSVVKLKDNQTLVLGGLITNDKTLQVNGVPVLKEIPLIKYLF 407
Query: 399 RNSRFNREETEIFIAATPFLV 419
+ E+ TP ++
Sbjct: 408 SSREEVTSRKELVFVITPHII 428
>gi|114798909|ref|YP_761208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
gi|114739083|gb|ABI77208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
Length = 694
Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats.
Identities = 57/273 (20%), Positives = 101/273 (36%), Gaps = 24/273 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV ++ TI EV +G Q + + + + G S
Sbjct: 438 KRQVLIEATIVEVSLTDGTSLGVQWDLVQDRLSATFTDTGSGDLTSLFPGVSVSYI---- 493
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSSTGAT 305
V++AL + + ++ P + ++ ++A G Q + +
Sbjct: 494 NTDIAAVINALAATSDVEIVSSPRMLVLNNETARLQVGDQVPIITQSAVSVSDPGAPVVN 553
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPS 364
S T D GV+L TP + + G + + I EVS ++ D P+ R + + +P
Sbjct: 554 STTYRDTGVILTVTPRIRAGGMVEVDISQEVSGVSETTTSSIDSPTISQRSIQSVLAVPD 613
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G T VL GL+ + GIP+L P+LGA FR++ + TE+ + P +V
Sbjct: 614 GSTAVLGGLMSSTRSYSRTGIPILKDTPVLGAAFRSTNQSERRTELIVLIEPTVVVSEEP 673
Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
D A + + G
Sbjct: 674 S------------SDIPALLRAALVRARGAPAT 694
>gi|285019110|ref|YP_003376821.1| type IV pilus assembly protein pilq [Xanthomonas albilineans GPE
PC73]
gi|283474328|emb|CBA16829.1| probable type iv pilus assembly protein pilq [Xanthomonas
albilineans]
Length = 639
Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats.
Identities = 48/271 (17%), Positives = 98/271 (36%), Gaps = 34/271 (12%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-------------------- 222
+++N+++ DQV ++ I + +G + + G
Sbjct: 364 ELINVID-RPVDQVLIEGRIVIATDTFARDLGARFGVAGRRSYGSNTGVVSGNLADNSSI 422
Query: 223 ------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
+ + G G + + FS + L AL+ ++ P
Sbjct: 423 LNNSLHNIPNGLNVNLPAGTFTTGNAGAIAYTLLGANFSLDMELSALQEEGRGEVISNPR 482
Query: 277 LTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ + + A G + + +V + + L TPT+ R+ L +
Sbjct: 483 IVTSNQREAVIRQGKDIAYVTITGGTGGAAATPNVQFKEVLLELKVTPTITDDNRVFLNM 542
Query: 333 QT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
EV V N G +P R+ +T V + G T+V+ G+ + + +P L
Sbjct: 543 NVKKDEVDHYVTLQNYGTVPEINRREINTAVLVDDGQTVVIGGVYEFTNRNSLAKVPFLG 602
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
+P LG LF+ ++ + E+ I TP +++
Sbjct: 603 DVPFLGNLFKQRGRSKAKAELLIFVTPKVMR 633
>gi|206561863|ref|YP_002232628.1| type II secretion system protein D [Burkholderia cenocepacia J2315]
gi|198037905|emb|CAR53850.1| type II secretion system protein D [Burkholderia cenocepacia J2315]
Length = 777
Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats.
Identities = 52/272 (19%), Positives = 98/272 (36%), Gaps = 36/272 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-------------------- 222
V++ L+ QV ++ I E+ Q+G Q +
Sbjct: 399 SVIDQLDAR-RAQVYIEALIVELNSTTQGQLGIQWQVASGQFLGGTNLAAAAGNVAGNSI 457
Query: 223 ---SSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPT 276
++G + S A ++ + +L + L+ P
Sbjct: 458 INLTTGTAGSTGAGLAANLSGLNQGLNIGWLHNMFGVQGLGALLQYFSGVSDANVLSTPN 517
Query: 277 LTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
L + + A G + ++S + D G+ LH P + G +
Sbjct: 518 LITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGIL 577
Query: 329 GLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
L++ TE S +A P++ R +T+ +G IVL GL++D+ +PL
Sbjct: 578 KLQLYTEDSAVVSGTTSAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYAVSNSKVPL 637
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L IP +G LFR+ R++T + + P ++
Sbjct: 638 LGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 669
>gi|120609694|ref|YP_969372.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1]
gi|120588158|gb|ABM31598.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1]
Length = 715
Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats.
Identities = 58/336 (17%), Positives = 122/336 (36%), Gaps = 50/336 (14%)
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIA 191
+++ ++ +++ G T S+R ++E +Q + + ++++ L++A
Sbjct: 383 ADMVTQLANNSTGSTGT-STRFLSERGSAIAEPRTNQLFVTDTPSKLEEVRQLLSTLDVA 441
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHS--------------------------------I 219
QV ++ I E R + +G +
Sbjct: 442 VR-QVMIEARIVEARDTFGRSLGVRLGGADLRANRGGDGGYSVGGNNRLAIGTSYNNAVA 500
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-----------LHALERATA 268
+ + G + + G FV+ S F+ L A+E
Sbjct: 501 SSGAGGTVATGSDAAGSTFVNLPAALSSGASFGNFALTLFNSAANRFLTLELSAMEADGQ 560
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+ ++ P L A G ++ Y + GAT++ + L TP + G I
Sbjct: 561 GKVVSSPRLITADQTKALIEQGTEYPYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGNI 619
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
L + +V++ G + T V + +GGT+V+ G+ + + + IPLL
Sbjct: 620 ILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEETNQENKIPLL 677
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
+P++G LF+N + E+ + TP ++
Sbjct: 678 GDVPVVGNLFKNRTRESTKREMLVFITPKVISDKGP 713
>gi|254483140|ref|ZP_05096374.1| general secretion pathway protein D [marine gamma proteobacterium
HTCC2148]
gi|214036662|gb|EEB77335.1| general secretion pathway protein D [marine gamma proteobacterium
HTCC2148]
Length = 727
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 54/282 (19%), Positives = 105/282 (37%), Gaps = 13/282 (4%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
+ G + + + L + + L +A QV ++ +I EV
Sbjct: 418 VTGSGDETAEVRVVADDENNSLMIYATSMQYKVIKTALDQLDVVAT--QVIIEASIIEVS 475
Query: 207 RDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
+ G + + + S G + S FS + VL+A
Sbjct: 476 LTDELRYGLEWTFSNSLGADYDGSGFLSSIAGAESPASIVPGFSYTVTNSIGNVSAVLNA 535
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVV 315
L + + ++ P++ + A G Q + + S+T D GV
Sbjct: 536 LAEESLLNIISTPSVMVLDNHYAYIHVGQQVPIIDSQTGSLANDTDRVTQSITYRDTGVK 595
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
L P+V + G I + + V++ A ++ R ++ V + S ++VL GL++
Sbjct: 596 LDVRPSVNAGGLITMDVAQSVTDVGEIDAATGQRAFLERNIESRVAVRSNESVVLGGLIR 655
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
++ +G+P L +PI+G+LF TE+ + TP
Sbjct: 656 ENSGTASQGVPWLHSVPIVGSLFGTDSARSNRTELLVIITPR 697
>gi|77918000|ref|YP_355815.1| type II and III secretion system protein [Pelobacter carbinolicus
DSM 2380]
gi|77544083|gb|ABA87645.1| type II and III secretion system protein [Pelobacter carbinolicus
DSM 2380]
Length = 537
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 69/334 (20%), Positives = 123/334 (36%), Gaps = 41/334 (12%)
Query: 128 RRFIADSNIRVEMVSD-----TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
++ S I E +D +V L + +D +R V + + + +
Sbjct: 170 NAMVSGSRIDTESSADFWTELSVALR-TMVGQEDGRRVVIQPQAGVVVVRALPEELRTIE 228
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------------- 227
+ + + + QV L+ I EV Q G S +
Sbjct: 229 QYLGTIQGNLQRQVILEAKILEVELGDGYQAGINWSAVNGDVSMAQTRGDIFADNGLADI 288
Query: 228 -KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
S A S L+ +F+ + LE ++ L+ P + ++ Q A
Sbjct: 289 VGSDGAAVTSGLASGAFGGVFSAALNFKNFQAFIELLETQGDVQVLSSPRIATVNNQKAV 348
Query: 287 FTSGGQHLYKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
G + T SS ++T G+ L TP + G++ L I V
Sbjct: 349 IKVGSDEFFVTDVSSDTVTGTTTTTSPDITLTPFFSGIALDVTPQIDPKGKVTLHIHPTV 408
Query: 337 SEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
SE + VR++D+ V SG +V+ GL+KD +Q +PL
Sbjct: 409 SEVSDQTKDITVAGETQTLPLAFSTVRESDSIVAAESGQVVVIGGLMKDQLQNRDASVPL 468
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
L ++P +GALFR+++ ++E+ I P +V+
Sbjct: 469 LGRLPGVGALFRHTQSVSRKSELVILLRPMVVEA 502
>gi|291286288|ref|YP_003503104.1| type II and III secretion system protein [Denitrovibrio acetiphilus
DSM 12809]
gi|290883448|gb|ADD67148.1| type II and III secretion system protein [Denitrovibrio acetiphilus
DSM 12809]
Length = 509
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 19/243 (7%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV ++ + EV + G T S D G + G + G +
Sbjct: 267 KQVLIEAKLVEVTLNDTSAYGINWRGTADGKSIGLSLGTDGGAAVLP--GGLTAVGAISS 324
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY- 312
F + + + ++ P + ++GQSA TSG + + T +
Sbjct: 325 FDYSDWFAFMAAYGRVESVGNPRIRVMNGQSAMITSGQLKPFWEMERETDDDTDDVTVTY 384
Query: 313 -------GVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRKA 356
G++L TP V G I L I S+ GV P+ +++A
Sbjct: 385 TRVTVLDGIMLGVTPHVKEDGTITLNIVPVFSDVEETPEQQLDENGVVVASYPNINLKEA 444
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T + L SG T+V+ GL+ + + + +PLL +P LG LF++ ++ E+ I T
Sbjct: 445 GTVLNLESGSTVVMGGLISNVETEDETKVPLLGDVPFLGYLFKSKYKYTQKRELVIFLTA 504
Query: 417 FLV 419
++
Sbjct: 505 TII 507
>gi|317052313|ref|YP_004113429.1| type II and III secretion system protein [Desulfurispirillum
indicum S5]
gi|316947397|gb|ADU66873.1| type II and III secretion system protein [Desulfurispirillum
indicum S5]
Length = 683
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 82/454 (18%), Positives = 148/454 (32%), Gaps = 74/454 (16%)
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
P +Y G + + DG +++ + + +L + + +
Sbjct: 107 PEALYAVATAAG---LQITSRDGTLVISSNDFRTFTLDYLAQG--AVLPGQSFSPLNSAP 161
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSG------------------RNQYANSSSKKVM 185
V L + QR + LS N A + +
Sbjct: 162 -VYLTDSAH-ASERQRIWNVIRENLSSLASEDGRVIINDLTGTILVSDNASAMRRIEAYL 219
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
+++ + QV + V I ++ +G +S SG A + G G
Sbjct: 220 DMVRRLYDQQVEISVRILQISLSDSLTMGVDYSALFRVSGSDTPIAFNLHGTEGQAGASL 279
Query: 246 S-----------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
GVL+ F L L + TL+ PT+T ++ + + S +
Sbjct: 280 DGTAGERGVLDYTVGVLNPGKFAGFLQFLSLHGTVHTLSNPTITTLNNVTGNVYSIRTYP 339
Query: 295 YKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGV 343
Y+ ++ + T GV L TP +++ G I L + V
Sbjct: 340 YQVTTTESSANVREARTYFEDVKIGVSLTVTPNIVNNGDILLEVLPVVGEIYEENFNPAS 399
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+ P + T + + + + GL+ + + GIP+LS+IP+LG LFR+ R
Sbjct: 400 GEREKPQTVEQAIRTILRTRNNHSYFIGGLIYEKNVESTSGIPVLSRIPVLGRLFRSDRR 459
Query: 404 NREETEIFIAATPFLV---------------KPV--------AMRDLSRPDDHYSVE--- 437
+ E+ I TP ++ P+ A D ++
Sbjct: 460 VQSRQELVIVLTPKIIPSLDSHSAGPVDYHSTPLHYGLLEYQAGARAPLALDDHAPPLTN 519
Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
DD FF R G E + + A+GF
Sbjct: 520 DDLAYFFLQRGLDALGAGE-NLQALSMLQSALGF 552
>gi|298369928|ref|ZP_06981244.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281388|gb|EFI22877.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str.
F0314]
Length = 715
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 54/271 (19%), Positives = 103/271 (38%), Gaps = 30/271 (11%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------- 226
K+++ L++ QV ++ I E + +G + G+ S
Sbjct: 444 KLIDELDVPTR-QVMVEARIVEAEEGFSRNLGVKFGAAGAGSRNAWGSNWSNAQNNNNTN 502
Query: 227 -----------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ S + S ++ L + L A E +TL+ P
Sbjct: 503 ASFNRGEVGYRTWSLDPNVSLPTASATSSIALVRSLSSGALGLELSASEELGKSKTLSNP 562
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ + A SG + Y+ +SS GATSVT + L TP + G+I + ++
Sbjct: 563 RVLTQDRKEAIIESGTEIPYQEATSS-GATSVTFKKAVLGLTVTPNITPDGQIIMTVKIN 621
Query: 336 VSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
P + + +T + GGT+++ G+ +++ +PLL IP++
Sbjct: 622 KDSPIDCQTDGLRTKCISTKNLNTQAMVEDGGTLIVGGIYEEENSNAVNKVPLLGDIPVV 681
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR 425
G LF++ + E+ I TP ++ V
Sbjct: 682 GNLFKSRGRSERRRELLIFITPRIMDGVGSN 712
>gi|257459465|ref|ZP_05624574.1| type II and III secretion system protein [Campylobacter gracilis
RM3268]
gi|257442890|gb|EEV18024.1| type II and III secretion system protein [Campylobacter gracilis
RM3268]
Length = 502
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 53/307 (17%), Positives = 111/307 (36%), Gaps = 27/307 (8%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
+V+ +G + + + + + L + + + ++ + QV L V I
Sbjct: 180 SVLNNGTEKYVAVAPIINQNAG--LVTVTAMKSQIARVDRYLSGMQKRLSRQVLLDVNII 237
Query: 204 EVRRDILKQIGFQHSITGSSSGP---------SKSFAADFGGKFVSEGGDFSVKGVLDRF 254
V + G S S + S+ G F
Sbjct: 238 SVELNNEYTTGIDWSKFQLGFNTYVGGDPTKLSGYHIDNGNRGKASDTHGTWTIGANLNF 297
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------- 306
+ + +++ LE + ++ P +T ++ Q A + G Y S++TG
Sbjct: 298 NIDGLINFLETKGKTKIISSPKVTTMNNQPAIISVGDTINYVLKSTTTGDYQGGDTQSDD 357
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADT 358
+ G++L+ P + RI LRI +S + P +K +
Sbjct: 358 QYSIFVGILLNILPEISDDNRIMLRINPSLSSLKYAEDNVRKENGRRDIAPDTLQKKLSS 417
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V + G T++L GL+ + +P+L++IP++G LF+++ +E+ TP +
Sbjct: 418 VVWVDDGDTVILGGLIGATKSKNNTRVPVLAEIPLIGNLFKSTADILSTSELIFVVTPHI 477
Query: 419 VKPVAMR 425
+
Sbjct: 478 IDNTGAP 484
>gi|531740|emb|CAA56979.1| xcpQ [Pseudomonas putida]
Length = 591
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 56/266 (21%), Positives = 102/266 (38%), Gaps = 26/266 (9%)
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK- 237
++ + ++ L+I QV ++ IAEV +++G Q G G
Sbjct: 276 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 334
Query: 238 -------------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ G + F+F +++AL+ + L+ PTL
Sbjct: 335 ANIAGAAAGEDTEALGKLLSATAGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 394
Query: 279 AISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+ AS G + + T S + ++ + GV L P + + L I
Sbjct: 395 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQ 454
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
EVS A D+ R+ T V + G ++L GL+ D++ + +PLL IP L
Sbjct: 455 EVSSIADSSAASDV-ITNKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 513
Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
G LFR+ + + + P +++
Sbjct: 514 GRLFRSDASKNTKQNLMVFIRPRILR 539
>gi|21230145|ref|NP_636062.1| general secretion pathway protein D [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66769864|ref|YP_244626.1| general secretion pathway protein D [Xanthomonas campestris pv.
campestris str. 8004]
gi|129748|sp|P29041|GSPD_XANCP RecName: Full=General secretion pathway protein D; Flags: Precursor
gi|155391|gb|AAA27615.1| XpsD precursor [Xanthomonas campestris]
gi|21111677|gb|AAM39986.1| general secretion pathway protein D [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575196|gb|AAY50606.1| general secretion pathway protein D [Xanthomonas campestris pv.
campestris str. 8004]
Length = 759
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 77/312 (24%), Positives = 124/312 (39%), Gaps = 33/312 (10%)
Query: 149 GMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + ++ET + A S + V+ L++ QV ++ IAEV
Sbjct: 432 GSVTLEVEGDKVGVSAVAETNTLLVRTSAQAWKSIRDVIEKLDV-MPMQVHIEAQIAEVT 490
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFS 255
Q G + + PS + + + G V +
Sbjct: 491 LTGRLQYGVNWYFENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGSVTSNGVAWTFLGKN 550
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTT 309
++ AL++ T +R L P++ + A+ G + + S +TG +SV
Sbjct: 551 AAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQY 610
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKAD 357
D GV+L P V G + L I EVS P A + R+
Sbjct: 611 IDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAACNVDINTRRVK 670
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T + +G TI+LAGL+ D GIP LSK+P++GALF N + E+ + TP
Sbjct: 671 TEAAVQNGDTIMLAGLIDDSTTDGSNGIPFLSKLPVVGALFGRKTQNSDRREVIVLITPS 730
Query: 418 LVK-PVAMRDLS 428
+V+ P RDL+
Sbjct: 731 IVRNPQDARDLT 742
>gi|167625758|ref|YP_001676052.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis
HAW-EB4]
gi|167355780|gb|ABZ78393.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis
HAW-EB4]
Length = 557
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 96/249 (38%), Gaps = 23/249 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
QV L+ + EV Q G +G + +S+ + GV
Sbjct: 285 RQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDITFGTSPTTGLSDQISSVLGGVTSI 344
Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----------TVS 299
F T++ L+ + L+ P +TA + Q A G +
Sbjct: 345 KLEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTNVSSTTVASNTP 404
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMPSYR 352
+T +T G+ L TP + G + L I V + + ++P +
Sbjct: 405 ITTPDVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQTKIIKISGSTLELPLAQ 464
Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R++DT ++ SG +V+ GL+K + ++ +PLL IP LG F N + +TE+
Sbjct: 465 SEIRESDTVIKAASGDVVVIGGLMKSENTEIVSKVPLLGDIPFLGEAFTNRANSTVKTEL 524
Query: 411 FIAATPFLV 419
I P +V
Sbjct: 525 VILLKPIVV 533
>gi|167571805|ref|ZP_02364679.1| general secretion pathway protein D [Burkholderia oklahomensis
C6786]
Length = 743
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 53/289 (18%), Positives = 100/289 (34%), Gaps = 30/289 (10%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ + E+ +G Q +
Sbjct: 365 IQADAATNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 423
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--------------------LDRFSFETV 259
++ + G S + +
Sbjct: 424 ANNALYAGTNLTTGGVGGGNSITNLTAGATNPLNVVGALTPGLNIGWLRNMFGIQGLGGL 483
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHD 311
L + L+ P L + + A G T +++ + D
Sbjct: 484 LQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRD 543
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVL 370
G+ LH P + G + L++ TE S V G + P++ R +TV +G IVL
Sbjct: 544 VGLTLHVKPQITDGGILKLQLYTEDSSVVNGTLTSQTGPTFNKRSIQSTVLADNGEIIVL 603
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GL++D+ Q +PLL IP +G LFR+ R +T + + P ++
Sbjct: 604 GGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRTKTNLMVFLRPVII 652
>gi|127511323|ref|YP_001092520.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4]
gi|126636618|gb|ABO22261.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4]
Length = 563
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 24/250 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAADFGGKFVSEGGDFSVK 248
QV L+ + EV Q G SG S A D G ++
Sbjct: 288 RQVILEAKVLEVTLSDGYQQGIHWESVLGQSGNNSIEFGTSPAPDGLGDVITSAIGGITS 347
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------- 300
+ F T+++ L+ + L+ P +TA + Q A G + T S
Sbjct: 348 LQIKGKDFSTMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGRDEYFVTDVSSTTVAGTT 407
Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGDMPSY 351
+T +T G+ L TP + G + L I V + + + ++P
Sbjct: 408 PVTTPEVELTPFFSGIALDVTPQIDEEGSVLLHIHPSVIDIKEQNKSIKVSDSTLELPLA 467
Query: 352 R--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ +R++DT ++ +G +V+ GL+K + +L +PLL IP LG F N + +TE
Sbjct: 468 QSEIRESDTVIKANTGDVVVIGGLMKSENIELISKVPLLGDIPFLGEAFTNRSNSLRKTE 527
Query: 410 IFIAATPFLV 419
+ I P +V
Sbjct: 528 LVILLKPTVV 537
>gi|167560915|ref|ZP_02353831.1| general secretion pathway protein D [Burkholderia oklahomensis
EO147]
Length = 743
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 53/289 (18%), Positives = 100/289 (34%), Gaps = 30/289 (10%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ + E+ +G Q +
Sbjct: 365 IQADAATNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 423
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--------------------LDRFSFETV 259
++ + G S + +
Sbjct: 424 ANNALYAGTNLTTGGVGGGNSITSLTAGATNPLNVVGALTPGLNIGWLRNMFGIQGLGGL 483
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHD 311
L + L+ P L + + A G T +++ + D
Sbjct: 484 LQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRD 543
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVL 370
G+ LH P + G + L++ TE S V G + P++ R +TV +G IVL
Sbjct: 544 VGLTLHVKPQITDGGILKLQLYTEDSSVVNGTLTSQTGPTFNKRSIQSTVLADNGEIIVL 603
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GL++D+ Q +PLL IP +G LFR+ R +T + + P ++
Sbjct: 604 GGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRTKTNLMVFLRPVII 652
>gi|163781745|ref|ZP_02176745.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
gi|159882965|gb|EDP76469.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
Length = 663
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 57/278 (20%), Positives = 106/278 (38%), Gaps = 25/278 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+++ L++ QV + TI E L IG + I G G S +
Sbjct: 364 SLISGLDVR-RKQVLIAATIVEASTKSLLDIGVRWQILGKRGGASFRGTSLSNIYSSFAS 422
Query: 243 GDFSVKGVLD-------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G+F + D + LE + ++ P + + Q A
Sbjct: 423 GNFLMGVFSDVGRTVTVGDATFFFPDLVLLFSLLETGSGFNIISNPRVLTLDNQPAIIKV 482
Query: 290 GGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGR-----IGLRIQTEVSEPV 340
G Y + + + G+ L+ TP + + L +
Sbjct: 483 GQVVPYAEGVKFDINGQPIITYDYKEVGLELNVTPRISGDNLRLTIGLNLEEIIDFVTNE 542
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
IG + +P R+ ++ V + +G T++L GL+ + EG+P L +IPILG LFR
Sbjct: 543 IGATSYTVPVTSNREVNSDVVIENGQTVILGGLVSTKTLKTMEGVPGLWRIPILGRLFRR 602
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
+++T +FI TP++V + +L++ + +
Sbjct: 603 DVKQKDKTTLFIFITPYVV--SSPEELTKITEEHRKLS 638
>gi|104783254|ref|YP_609752.1| type II secretion system protein D [Pseudomonas entomophila L48]
gi|95112241|emb|CAK16968.1| putative type II secretion system protein D [Pseudomonas
entomophila L48]
Length = 651
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 57/266 (21%), Positives = 98/266 (36%), Gaps = 26/266 (9%)
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
++ + ++ L+I QV ++ IAEV +++G Q G G
Sbjct: 339 AAYRSIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 397
Query: 239 VSEGGDFSVKGVLDRFSF--------------------ETVLHALERATAIRTLAEPTLT 278
S G S +++AL+ + L+ PTL
Sbjct: 398 ASIAGAASSGDNAKLGKLLSATTGATAGFGHFGGGFNFAMLVNALKGNSGFNLLSTPTLL 457
Query: 279 AISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+ AS G + + T S + ++ + GV L P V + L I
Sbjct: 458 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQVNVDNSVRLDIVQ 517
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
EVS A D+ R+ T V + G ++L GL+ D+ + +PLL IP L
Sbjct: 518 EVSSIAESRAASDV-ITNKREIKTKVMVEDNGLVILGGLISDERSTSNQRVPLLGDIPGL 576
Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
G LFR+ + + + P +++
Sbjct: 577 GRLFRSDASKGTKQNLMVFIRPRILR 602
>gi|302383551|ref|YP_003819374.1| general secretion pathway protein D [Brevundimonas subvibrioides
ATCC 15264]
gi|302194179|gb|ADL01751.1| general secretion pathway protein D [Brevundimonas subvibrioides
ATCC 15264]
Length = 688
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 64/291 (21%), Positives = 104/291 (35%), Gaps = 31/291 (10%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-- 249
QV ++V I E+ ++ +QIG Q + G+ F G S G
Sbjct: 393 RRAQVKIEVAIVEITGELGEQIGVQLGLGGAVPDDGVIGGTSFSNGGSDLGTVLSALGYP 452
Query: 250 ------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
F +L AL +A L+ P++T + Q A G +
Sbjct: 453 AGRLLGQGLSLAAGSEGEFGLLLQALGTNSAANLLSSPSVTVLDNQPAEIVVGQNVPFRT 512
Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPS 350
+S+ T+++ D G+ L P V + L + EVS V +
Sbjct: 513 GSFATDGNSTNPFTTISREDVGLTLRVIPRVHEGDVVKLDVSQEVSSLVTTNITGAADLI 572
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
R T+V G TIVL GL+ DD +P LS +P++G FR+ R ++ +
Sbjct: 573 TNRRSIQTSVLANDGETIVLGGLVTDDRMSNNSRVPGLSSLPVVGNAFRSRRDSQTRRTL 632
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
FI P +++ D ++F R N+
Sbjct: 633 FIFLKPTILR----------TDDDVAASARESFDRLRANEPVRIDPTRPPP 673
>gi|226226499|ref|YP_002760605.1| putative general secretion pathway protein D precursor
[Gemmatimonas aurantiaca T-27]
gi|226089690|dbj|BAH38135.1| putative general secretion pathway protein D precursor
[Gemmatimonas aurantiaca T-27]
Length = 621
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 67/299 (22%), Positives = 113/299 (37%), Gaps = 22/299 (7%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL--------------LNIAGE 193
G + + A + + L ++ V+ L+I
Sbjct: 295 SGAATPVTGATVARDSAAGLLVGRTTVVANTPTNSLVIRTAPPNFPMLRETIEALDIR-P 353
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV +VTIAE+ + G + G ++ + LD
Sbjct: 354 AQVLFEVTIAEIALGRGFEFGIDWAAVNRG-GDVQAQFGNPEIPDTGSTSALLRVVRLDG 412
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATSVTT 309
+L + + ++ LA P + A + + AS G + + + + + +V
Sbjct: 413 TGVRALLRTIASKSEVQVLATPEIMAANNREASILVGSKVPFISSTRLGNDISIDRAVQY 472
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGT 367
D G L PT+ G I +++ EVS A P R+A T L G T
Sbjct: 473 QDVGTKLAIIPTINDEGYISVQLLQEVSSLTPQTVAAALSAPVISTREASTRAVLRDGQT 532
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
V+AGL+ + +G+P+L IP LGALF+ R+ TE+ I TP++V+ A D
Sbjct: 533 AVIAGLIGETRTTQDQGLPILKDIPWLGALFKRQSSTRQRTELAIFVTPYVVRSDADAD 591
>gi|85711535|ref|ZP_01042593.1| Type II secretory pathway, component PulJ [Idiomarina baltica
OS145]
gi|85694687|gb|EAQ32627.1| Type II secretory pathway, component PulJ [Idiomarina baltica
OS145]
Length = 404
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 60/285 (21%), Positives = 117/285 (41%), Gaps = 11/285 (3%)
Query: 144 TVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
+L + + Q AV + + T + S K+++ L+I + QV ++ +
Sbjct: 118 AALLSQSEQRLLSDQGAVSIDARTNTLILKETPHNVSGIKQLITQLDIPVK-QVMIEARM 176
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSK------SFAADFGGKFVSEGGDFSVKGVLDRFSF 256
++ + ++Q G + + + + +V + +
Sbjct: 177 VTMKSNAIEQFGVRWGDLTPRNDDQVIADVIDGMRVELPAVPAAGRLKANVGKLSEGLLL 236
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
+ L A+E+ +A P + + Q A G + Y ++S GAT+V + L
Sbjct: 237 DLELSAMEQDNEAEIIARPKIFTSNQQPAYIEQGTEFPYVESAAS-GATAVKFKKAVMGL 295
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLL 374
TP + S + L + + V+ P+ ++ T V + SG TIVL G+
Sbjct: 296 RVTPQITSNDYVMLDLTITQNTRGDTVSTPTGPAVAIDTQEMATRVLVKSGETIVLGGIF 355
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ + G+P+LS +P +G LF+N R E+ E+ I TP L+
Sbjct: 356 QQYELKDDTGVPILSSLPFVGNLFKNQREQSEKRELVIFVTPTLL 400
>gi|289667997|ref|ZP_06489072.1| fimbrial assembly protein [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 631
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 44/267 (16%), Positives = 97/267 (36%), Gaps = 33/267 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------------SS 224
DQV ++ I + +G + I G +
Sbjct: 363 RPVDQVLIESRIVIATDTFARDLGARFGIAGRQQYGGNTGVISGSTTNNVSILNSGIHNV 422
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+F G + G + + F+ + L A++ ++ P + + +
Sbjct: 423 PGGLNFNLPAGTFTTNTAGAIAYTLLGRNFALDMELSAMQEEGRGEVVSNPRIVTSNQRE 482
Query: 285 ASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
G + + + +V + + L TPT+ + R+ L + + E
Sbjct: 483 GVIKQGREIGYVTISGGGAGGQSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 542
Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
++ G +P R+ +T V + G T+V+ G+ + ++ +P L IP LG L
Sbjct: 543 RFIDLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESIAKVPFLGDIPFLGNL 602
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAM 424
F+ ++E+ E+ + TP +++ +
Sbjct: 603 FKKRGRSKEKAELLVFVTPKVLRVASA 629
>gi|3978519|gb|AAD04923.1| PilQ [Myxococcus xanthus DK 1622]
Length = 901
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 49/287 (17%), Positives = 97/287 (33%), Gaps = 35/287 (12%)
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
T + + ++ ++ L+ QV ++ I E + +G Q +
Sbjct: 609 RTNVLIVKDVRSNTERARSLVRSLDTQTP-QVLIESRIVEANTSFSRSLGVQWGGQARAG 667
Query: 225 GPSKSFAA-------------------------------DFGGKFVSEGGDFSVKGVLDR 253
+ + G+ V F+
Sbjct: 668 QATGNSTGLIFPNNLAVTGGVTGTGAGLPDNPNFAVNLPTGTGQGVGGAMGFTFGSAGGA 727
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
L A E +++T++ P +T + +A +S + T +
Sbjct: 728 LQLNLRLSAAENEGSVKTISAPKVTTLDNNTARI--NQGVSIPFSQTSAQGVNTTFVEAR 785
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAG 372
+ L TP + G + + I ++P PS + ++A+T V + G T V+ G
Sbjct: 786 LSLEVTPHITQDGSVLMSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGG 845
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +P LS+IP+LG LF+N+ E+ I TP ++
Sbjct: 846 IYVRRGATQVNSVPFLSRIPVLGLLFKNNSETDTRQELLIFITPRIL 892
>gi|291286428|ref|YP_003503244.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM
12809]
gi|290883588|gb|ADD67288.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM
12809]
Length = 616
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 52/258 (20%), Positives = 100/258 (38%), Gaps = 28/258 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------A 232
+QV ++ I E + G + + + + +
Sbjct: 327 RPREQVYVEALIIETSIENGSDFGVEWQVGAGNDSQAGTIGYLGSDGALTSFQSSVLDGD 386
Query: 233 DFGGKFVSEGGDFSVKG------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
+S G + + G + + + + ++ A+ I L+ P + + + A
Sbjct: 387 SPNFGALSSGFNLGILGDIVTYEGVSFPTLGILANFVKTASGINILSNPQILTLDNEEAE 446
Query: 287 FTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
G + K S++ S D GV L+ P + S I L+I+ EV +
Sbjct: 447 IFVGENRPFLTSTKYDSNNNPVQSYDYRDVGVKLNIVPQISSNDTITLKIEQEVKKVSGA 506
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
P R T V+L G +V++GLLKDD + +P LS IP++G LF+N
Sbjct: 507 TADVVAPVTLTRSTKTKVKLKDGAIMVISGLLKDDSETYNSSVPWLSSIPVIGWLFKNKN 566
Query: 403 FNREETEIFIAATPFLVK 420
+ E+T + + + +++
Sbjct: 567 SSSEKTNMMVFISTSIIR 584
>gi|254251012|ref|ZP_04944330.1| Type II secretory pathway component PulD [Burkholderia dolosa
AUO158]
gi|124893621|gb|EAY67501.1| Type II secretory pathway component PulD [Burkholderia dolosa
AUO158]
Length = 780
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 54/274 (19%), Positives = 97/274 (35%), Gaps = 39/274 (14%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK-----F 238
V++ L+ QV ++ I E+ +G Q + + G
Sbjct: 399 VIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPTSGLGNSIINL 457
Query: 239 VSEGGDFSVKGVLDRF------------------------SFETVLHALERATAIRTLAE 274
+ G S GV +L + L+
Sbjct: 458 TAGGTTTSAGGVTGGGLAANLGTLTQGLNVGWLHNMFGVQGLGALLQYFSGVSDANVLST 517
Query: 275 PTLTAISGQSASFTSGGQ--------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
P L + + A G + ++S + D G+ LH P + G
Sbjct: 518 PNLITLDNEEAKIVVGQNVLIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGG 577
Query: 327 RIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+ L++ TE S V ++ P++ R +T+ +G IVL GL++D+ Q +
Sbjct: 578 ILKLQLYTEDSAVVPSTTSSQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKV 637
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
PLL IP +G LFR+ R++T + + P ++
Sbjct: 638 PLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 671
>gi|319791917|ref|YP_004153557.1| type IV pilus secretin pilq [Variovorax paradoxus EPS]
gi|315594380|gb|ADU35446.1| type IV pilus secretin PilQ [Variovorax paradoxus EPS]
Length = 713
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 58/280 (20%), Positives = 104/280 (37%), Gaps = 41/280 (14%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------------- 219
+++ L+I QV ++ I E K +G +
Sbjct: 437 ELIQKLDIPVR-QVLIEARIVEASDTFGKSLGVRLGGGISRERVASANGNPAYGTLGVMP 495
Query: 220 ------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALER 265
++ + A G + G F++ S + ALE
Sbjct: 496 ATTNGGGVGGAAATWTNSNFINLPAGDAGGTGNTPGAFAISLFNSSLSRMLNLEISALEA 555
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+ ++ P + A G + Y+ +SS GATS++ + L TP +
Sbjct: 556 DGKGKLVSSPRVITADQTKALIEQGEEIPYQQATSS-GATSISFRKAVLKLEVTPQITPE 614
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
G I L +VS+ GVN P+ + T V + +GGT+V+ G+ + + +
Sbjct: 615 GNIIL--TLDVSKDARGVNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRV 672
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
P+L +IP +GALFR +TE+ + TP ++
Sbjct: 673 PVLGEIPYMGALFRKRERVANKTEMLVFITPKMITDRNAA 712
>gi|295678175|ref|YP_003606699.1| general secretion pathway protein D [Burkholderia sp. CCGE1002]
gi|295438018|gb|ADG17188.1| general secretion pathway protein D [Burkholderia sp. CCGE1002]
Length = 811
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 59/288 (20%), Positives = 102/288 (35%), Gaps = 41/288 (14%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ + + V++ L+ QV ++ I E+ + +G Q + +S +
Sbjct: 389 TAPEATYRNLRAVIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQVANNSLFAGTNLQ 447
Query: 232 ADFGGKFVS----------------------------EGGDFSVKGVLDRFSFETVLHAL 263
++ + + +L AL
Sbjct: 448 TGSSNSIINLTAAAAAAGATGATGGAALVSGLSGLQQGLNVGWIHNIFGVQGLGALLQAL 507
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVV 315
+ L+ P L + + A G +T S S + T D G+
Sbjct: 508 SQTADANVLSTPNLITLDNEEAKIIVGTNVPIQTGSYSNLTSGTTSAAFNTFDRVDVGLT 567
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLA 371
LH P + G + L + TE S V G N P + R +TV +G IVL
Sbjct: 568 LHVKPQITDGGILKLLLYTEDSAIVNGTNNAATNPAGPEFTKRSIQSTVLCDNGEIIVLG 627
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GL++D+ Q +PLL IP LG LFR+ + R +T + + P ++
Sbjct: 628 GLMQDNYQVSNSKVPLLGDIPWLGQLFRSEQKTRNKTNLMVFLRPVIL 675
>gi|254498863|ref|ZP_05111570.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella
drancourtii LLAP12]
gi|254351917|gb|EET10745.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella
drancourtii LLAP12]
Length = 578
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 58/262 (22%), Positives = 112/262 (42%), Gaps = 25/262 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
++ ++++ + + QV L+ I EV + Q+G + G+S +F +
Sbjct: 265 ERYLDMVQNSMDRQVILEAKILEVNLNNQFQMGINWKLFGASLNALSNFPEVDIAQADFP 324
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
F V + F +V+ ALE ++ L+ P ++A++ QSA+ G + T S
Sbjct: 325 -SAFDVDVHWNPKDFTSVIQALETQGNVQVLSSPRVSAMNNQSAAIKVGFDEFFVTNVSQ 383
Query: 302 TGA-------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EP 339
++T G+ L TP + + G++ L + VS +
Sbjct: 384 NQNIVTSSLVTQPILNVNLTPFFSGITLDVTPQIDANGQVTLHVHPTVSLVKDQRKVIDL 443
Query: 340 VIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
++P +R++DT V +G +V+ GL++D + +P IP LG L
Sbjct: 444 GTQGGILNLPLANSTIRESDTIVHAKTGQVVVIGGLMQDTTSEGIGQVPWFGNIPFLGTL 503
Query: 398 FRNSRFNREETEIFIAATPFLV 419
R ++ +++E+ I P LV
Sbjct: 504 VRATKQTSQKSELVILLRPTLV 525
>gi|121603587|ref|YP_980916.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2]
gi|120592556|gb|ABM35995.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2]
Length = 712
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 60/344 (17%), Positives = 121/344 (35%), Gaps = 35/344 (10%)
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
D +++ + + + + S I V++ + G S R +
Sbjct: 369 KDKQELEARVAIQNLEAVRTQSFQINYAKASEIAVQISAGG---TGATTARILSNRGSVI 425
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
+E + S ++V N + QV ++ I E + +G +
Sbjct: 426 AEP-RTNQLFVTDIPSRLEQVQNFIAKLDIAVRQVLIEARIVEASDTFGRSLGVRLGGGT 484
Query: 222 SSS-------GPSKSFAADFGGKFVSEGGDF-------------------SVKGVLDRFS 255
+ + S ++G G+F S+
Sbjct: 485 IGAAGALTRGNTNVSLGTNYGATVADTSGNFVSFPASTLGVANAASSFAVSIFNASANRF 544
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
L ALE + ++ P + A G + Y+ ++S+GATS+ +
Sbjct: 545 LNLELSALEADGKGKIVSSPRVVTADQTKALIEQGTEFPYQ-TATSSGATSLAFRKANLK 603
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
L TP + G I L + +V++ G + + T V + +GGT+V+ G+
Sbjct: 604 LEVTPQITPEGNIILDL--DVNKDSRGETTAAGIAIDTKHIQTQVLVENGGTVVIGGIFT 661
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ + +PLL +P LG LF++ + E+ + TP ++
Sbjct: 662 LEETNNEVKVPLLGDVPYLGNLFKSRERTSRKQEMLVFITPKMI 705
>gi|116751076|ref|YP_847763.1| general secretion pathway protein D [Syntrophobacter fumaroxidans
MPOB]
gi|116700140|gb|ABK19328.1| general secretion pathway protein D [Syntrophobacter fumaroxidans
MPOB]
Length = 793
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 21/248 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------EG 242
V ++V IAEV + G + + + G + G VS
Sbjct: 520 PRAVLIEVIIAEVALTKDFEYGLKWYFSHAEVGAGVGQGSLNGLGGVSDIALNLAGISSA 579
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
G ++ V + VL L T ++ L+ PTL A + A+ GG+ + S +
Sbjct: 580 GGMALAWVSNAKDMAGVLSWLSSKTKVKILSTPTLLATDNKEAAIQVGGRTPVPSGSYTG 639
Query: 303 G--------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSY 351
G +++ + G +L TP + + G + L ++ + G P++
Sbjct: 640 GTSTTLDTVFSTIEYEETGTILTVTPHINAGGLVRLEVEQTIRRVGANATVGVNNTAPTF 699
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R TT+ G T+V+ G++ + + G P+L +PI+G LF +RE TE+
Sbjct: 700 TERNLKTTLLAQDGSTVVIGGIIDEIDRDTTTGAPMLVDVPIIGPLFGQKGKSRERTELL 759
Query: 412 IAATPFLV 419
IA TP +V
Sbjct: 760 IAITPRVV 767
>gi|261414659|ref|YP_003248342.1| type II and III secretion system protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261371115|gb|ACX73860.1| type II and III secretion system protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326330|gb|ADL25531.1| bacterial type II and III secretion system protein [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 487
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 22/245 (8%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------------KSFAADFGGK 237
Q+ + + V ++ +++G + SS + F
Sbjct: 192 QIMITAKLVVVNSELARELGVDWTAALGSSTLTPGTAAAATGATAGSSRISGVIQSFPNG 251
Query: 238 FVSEGG--DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
G + ++ L + + + L + LA P ++ + A G +
Sbjct: 252 TSPAVGKANTAITASLLDNNLQIAISNLMGDASTEVLASPQVSTLDNTEAQVFM-GDKVS 310
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
V +G +S + G+ L TP V RI L + E G + ++
Sbjct: 311 IRVIDDSGESSTKMVETGIKLTVTPHVSGDNRILLDLHPE--NNSYGYDEKGEVVISTQE 368
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
A T V + G T+V+ GL +++ + + GIP L IP+LG LF+ SR + + ++ I T
Sbjct: 369 AKTKVVVADGETVVIGGLTRNENTESESGIPFLKDIPLLGNLFKYSRKSITKKDLVIFVT 428
Query: 416 PFLVK 420
P +++
Sbjct: 429 PRIIR 433
>gi|302036706|ref|YP_003797028.1| putative type IV pili biogenesis protein PilQ [Candidatus
Nitrospira defluvii]
gi|300604770|emb|CBK41102.1| putative Type IV pili biogenesis protein PilQ [Candidatus
Nitrospira defluvii]
Length = 664
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 65/342 (19%), Positives = 123/342 (35%), Gaps = 56/342 (16%)
Query: 109 MLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
+ + + + ++ +LR+ + + V S+ +++ ++ ++ ++ +
Sbjct: 350 VTRVFYIRNLNATEVQTSLRQNLSPRGTMTVSAASNALIISDTESKLEVLRQLLDGVDLE 409
Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
+ QV ++ I + + +G Q I + S
Sbjct: 410 VP-------------------------QVQIEARIVQADTTYTRSLGVQWGIQNVNQLGS 444
Query: 228 KSFAADF---------------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
S + F S G G D + L A E
Sbjct: 445 SSGTSAFKTGTTGAFGAQVSDFLINLPANPGLPSVPGAGFSIGKTDGAMLDVRLSAGELL 504
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+ +A P +T + + A G ++T S T T D + L+ TP + S
Sbjct: 505 GLTKVIAAPKITTLDKRDAKIAQGESIPFQTTSLQG--TQTTFVDANLELNVTPQITSRD 562
Query: 327 ------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+I ++++ + N PS R+A T V + G T+V+ G+ D
Sbjct: 563 PKEIGKQILMKVRATRNAVGARSNPAG-PSIDRREATTQVLVRDGETMVIGGVFVDTQSN 621
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
GIP LS+IP+LG LF+N N + E+ I TP +V+
Sbjct: 622 NVAGIPYLSRIPVLGWLFKNKTENVSKQELLIFLTPTIVRST 663
>gi|167582884|ref|ZP_02375758.1| general secretion pathway protein D [Burkholderia thailandensis
TXDOH]
Length = 744
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 53/297 (17%), Positives = 102/297 (34%), Gaps = 31/297 (10%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ + E+ +G Q +
Sbjct: 365 IQADAATNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 423
Query: 220 TGSSSGPSKSFAADFGGKFVS------------------EGGDFSVK---GVLDRFSFET 258
++ + G S ++ +
Sbjct: 424 ANNALYAGTNLPTGGVGGGNSIVDLTTRAATSAVGAISTLTPGLNIGWLHNMFGIQGLGG 483
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTH 310
+L + L+ P L + + A G T +++ +
Sbjct: 484 LLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRR 543
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIV 369
D G+ LH P + G + L++ TE S V N P++ R +TV +G IV
Sbjct: 544 DVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGEIIV 603
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
L GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 604 LGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIITDRETAQ 660
>gi|56476683|ref|YP_158272.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum
EbN1]
gi|56312726|emb|CAI07371.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum
EbN1]
Length = 721
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 54/267 (20%), Positives = 96/267 (35%), Gaps = 41/267 (15%)
Query: 193 EDQVTLKVTIAEVRRDILKQ----------------------------IGFQHSITGSSS 224
QV ++ I E +D + +G TG ++
Sbjct: 449 PRQVMIEARIVEANKDFARDLGVRLGVGGVGGRTVGFDANGRPIRRATVGGGLENTGFNA 508
Query: 225 GPS------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
G + + S + L ALE R +
Sbjct: 509 GQTVAATDAQVATVPGGLNVNLPAPGGSGVLSAVLWNNTATRFLNLELSALESDGRGRIV 568
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ P + + A G + Y +S+GA S+ + L P + GR+ L +
Sbjct: 569 SSPRVLTANQVEAVIEQGTKIPYP-EKTSSGAASIKFEKAVLSLKVKPQITPEGRVQLFV 627
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
P + P+ + T V + +GGT+V+ G+ +++ IPLL ++P
Sbjct: 628 LVNKDRPDFARSVEGTPTVVTKNIQTEVLVENGGTVVIGGIYEEEETDSVTRIPLLGEVP 687
Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
++GALFRN+ N + +E+ I TP +V
Sbjct: 688 LVGALFRNTIKNSKRSELLIFITPRIV 714
>gi|226943724|ref|YP_002798797.1| general secretion pathway protein D [Azotobacter vinelandii DJ]
gi|226718651|gb|ACO77822.1| general secretion pathway protein D [Azotobacter vinelandii DJ]
Length = 752
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 11/239 (4%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
V + V +AEV + + +G S G + G ++ +
Sbjct: 472 VIIDVLLAEVNLNDREGLGVDWQNITGSLGSKQLIFGTANGI---GSSGLNISALNSAGQ 528
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------VT 308
+ L+A + P L SG+ A+ G + T ++ + T V
Sbjct: 529 TKATLNAFYDNNQAVIRSSPKLMVRSGEEATIEVGNEIPVVTGTTQSTDTDNAPITQTVQ 588
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGT 367
GV+L+ PTV + G + L+I E+SE G P R+ +T + L GG+
Sbjct: 589 YRKTGVLLNIKPTVQASGVVDLKISQELSESTDTGTGDTLTPIINNRRVETALTLRDGGS 648
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
++LAGL+ + G+PLL +P +G LF++ + TE+ + P++V+
Sbjct: 649 VMLAGLISSSKGKGDNGVPLLGDLPWIGNLFKSQSNSETRTELIVMIIPYVVRDFDEAQ 707
>gi|283781400|ref|YP_003372155.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
gi|283439853|gb|ADB18295.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
Length = 854
Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats.
Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 4/248 (1%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV ++ I VR +G + + + + +K
Sbjct: 339 PRQVLIEAMILSVRLSDNMTMGVNFEALRDKNNVRLVSGSPLTDLANIDLSEGGLKLGFL 398
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVTTH 310
S + ALE +A P L ++ Q A G Q ++ TV+ ++ SV
Sbjct: 399 DASLAVFIDALETVGDTNVIASPRLMCLNKQRAEIQIGEQLGYVSTTVTENSATQSVNFL 458
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIV 369
D G +L P + + G I L + E+S + + +P+ V + T V G T++
Sbjct: 459 DVGTLLRLRPNIANDGLIRLEVHPELSTGTVSIEQGLTIPNKTVTQVTTNVMCADGCTVI 518
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLS 428
L GL++ D+ IP L +P++G FR +E TEI + TP +V +P+ +
Sbjct: 519 LGGLIRQDLTNNTSQIPFLGSLPLVGPAFRQKTETQERTEIIVLLTPRIVSEPMLGEEGR 578
Query: 429 RPDDHYSV 436
+ + ++
Sbjct: 579 KYGNSFTE 586
>gi|160901009|ref|YP_001566591.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1]
gi|160366593|gb|ABX38206.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1]
Length = 716
Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats.
Identities = 58/324 (17%), Positives = 116/324 (35%), Gaps = 43/324 (13%)
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS-GRNQYANSSSKKVMNLLNIAGED 194
+++ + + V + S+R +SE +Q + A + K + L
Sbjct: 390 LQITANNSGGGVGNSVSSRFLSERGSAISEPRTNQLFVTDTPAKLEAVKALLLTLDVPVR 449
Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-------------------------------ITGSS 223
QV ++ I E R + +G + + S
Sbjct: 450 QVLIEARIVEARDTFGRALGVRLGGGDLRAQRGGDGGYGIGGDNRLVFGTGYENAVASSG 509
Query: 224 SGPSKSFAADF--------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
SG + + + +F G + S+ L A+E + ++ P
Sbjct: 510 SGGTVNTSGNFVNLPAAKLTGVSGTGSFALSIFNSAANRFLALELSAMEADGQGKIISSP 569
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
L A G ++ Y + GAT++ + L TP + G I L +
Sbjct: 570 RLVTADQTKALIEQGTEYPYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGDIILD--LD 626
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
V++ G + + T V + +GGT+V+ G+ + + + IP L +P+LG
Sbjct: 627 VNKDSRGETTTQGVAIDTKHIKTQVLVQNGGTVVIGGIFEMEETNQESKIPFLGDVPVLG 686
Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
LF++ ++ E+ + TP ++
Sbjct: 687 HLFKSRVRESQKREMLVFITPKMI 710
>gi|312143767|ref|YP_003995213.1| type II and III secretion system protein [Halanaerobium sp.
'sapolanicus']
gi|311904418|gb|ADQ14859.1| type II and III secretion system protein [Halanaerobium sp.
'sapolanicus']
Length = 629
Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats.
Identities = 64/320 (20%), Positives = 122/320 (38%), Gaps = 36/320 (11%)
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
+ + D ++ + F D + V + +V++G
Sbjct: 244 YDKSLEPGTRHVRVDYVDTEQIKEVIENFYPDIRLHVNNKTKRIVING------------ 291
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
+ S ++++ LN+ QV ++ + EV L+++G + ++
Sbjct: 292 ------------PENRLDSVEQLVKQLNVP-RQQVVIETRVEEVSEGRLRELGIEGDLSQ 338
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ S+ + AL+ + +TLA P L ++
Sbjct: 339 LRIIKDDHITDRRADSREPQPDKLSLT-------WPEFFRALDETSDSKTLANPRLMTLN 391
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
G++A+ + Y+ V + + + GV + FTP + I L I+ VS
Sbjct: 392 GETANMAILDEVPYRVVEINDDGSRTETFEYAEAGVDIEFTPWITENKEIELSIKPRVSS 451
Query: 339 PV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ AG P+ R R+ +T + L G T+ + GL++ D + IPLL IPI+G L
Sbjct: 452 FTQVTTAAGAPPALRSREVETMLRLNDGETLAIGGLIQTDQDGVITKIPLLGDIPIIGEL 511
Query: 398 FRNSRFNREETEIFIAATPF 417
F++ R E+ I TP
Sbjct: 512 FKSRRNEGSHNELIIFVTPR 531
>gi|149189158|ref|ZP_01867445.1| fimbrial assembly protein [Vibrio shilonii AK1]
gi|148836912|gb|EDL53862.1| fimbrial assembly protein [Vibrio shilonii AK1]
Length = 550
Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats.
Identities = 60/313 (19%), Positives = 116/313 (37%), Gaps = 30/313 (9%)
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKVMNLLNIA 191
NI +D + G + ++ T K+++ L+I
Sbjct: 238 NINYAKAADVAAMIGGDSDVSMLSERGSVAIDERTNALLVRELPENLRVIKEIIASLDIP 297
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------- 244
+ QV ++ + ++ ++++G + T + + + GG
Sbjct: 298 VK-QVQIEARVVTIKEGNIEELGIRWGYTSINGDTTIGSTIEGNLASSGIGGGEVDIDDF 356
Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
F V + + L AL+ + ++ P L + +SA
Sbjct: 357 LNVNLGALSDNAASIAFQVASLGSNTLLDLELSALQSESKAEIISSPRLITTNKKSAYIE 416
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAG 346
G + Y +SS GAT+V + L TP + R+ L + V+ G
Sbjct: 417 QGTEIPYLKSTSS-GATAVEFKKAVLSLTVTPQITPDNRLILDLDVTQDRVGEVLKTLEG 475
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + ++ T V + G T+VL G+ + + + +P+L IP LGALFR + N
Sbjct: 476 ETVAIDTQRIGTQVLVNDGETVVLGGIFQHAMTSKVDKVPVLGDIPGLGALFRRTYENIG 535
Query: 407 ETEIFIAATPFLV 419
+ E+ I TP ++
Sbjct: 536 KNELLIFVTPKII 548
>gi|242277876|ref|YP_002990005.1| type II and III secretion system protein [Desulfovibrio salexigens
DSM 2638]
gi|242120770|gb|ACS78466.1| type II and III secretion system protein [Desulfovibrio salexigens
DSM 2638]
Length = 534
Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats.
Identities = 72/430 (16%), Positives = 157/430 (36%), Gaps = 18/430 (4%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISI---GLNKVIILQVPVDVQDVLV 71
L + + I + + +++ + ++ V + L
Sbjct: 87 ALRLLYSVLDMKGYTLVQQSGYYKIVSKSMAVHEGLNVDSITVGGDQMV-TEVIMLKYLK 145
Query: 72 SDPTKADV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
+ AD + SP GK+ + ++ L I+ +
Sbjct: 146 AADVIADFRQILSPEGSIFSGKSNNYIVFTDTAANVNKIKELISHIDMPGSLPVSKTYSL 205
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
V + + + + Q + + + + ET + + +++ L++
Sbjct: 206 QYIEAKTVAPMLTKLYTEKVGKVTQSTVQILSMDETNSLIVLAPESVHDDITSIISKLDV 265
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
QV++K + EV ++GF+ + ++ G A DFG F G +
Sbjct: 266 RT-MQVSIKAYLVEVTLTDETKLGFEWMFSTNADGTDLKGALDFGHIFDPTGIANTAQEA 324
Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVS 299
+++ +F+ +++ + R ++ P + A+ Q AS G + S
Sbjct: 325 LKFSIINSDNFKMMMNFFASDDSSRVVSAPHIVALDNQKASIAVGTEIPILKLTQTSVTS 384
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ +G+ L+ TPT+ + L+I +S + D R A TT
Sbjct: 385 QQNVIKTYDHRKFGMQLNITPTIAENRDVTLKIDQTLSSLLADDTDPDKWQSTDRAASTT 444
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V + T+V+ GL+ + K+G P L +P+LG LF + + ++E+ + TP+++
Sbjct: 445 VLVKDAQTLVIGGLMTVNSALDKKGAPYLRNMPVLGPLFGSQDDSMTKSELLLFLTPYVI 504
Query: 420 -KPVAMRDLS 428
P +S
Sbjct: 505 ATPDEADAMS 514
>gi|88704159|ref|ZP_01101873.1| General secretion (type II) pathway protein D precursor
[Congregibacter litoralis KT71]
gi|88701210|gb|EAQ98315.1| General secretion (type II) pathway protein D precursor
[Congregibacter litoralis KT71]
Length = 745
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 54/284 (19%), Positives = 110/284 (38%), Gaps = 7/284 (2%)
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
V+ G + + D + + L + + L +A QV +
Sbjct: 426 TSVNMGTTGAGQISPLADVRVVADEENNALMIYADGKQYGIVKDALKQLDVVAT--QVII 483
Query: 199 KVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
+ +I EV+ + G + + + G + FS
Sbjct: 484 EASIMEVQLIDELRYGLEWTFKNGLGNNYDGLGTLAAGAAGPAAAAGFSYTVTNSLGDIS 543
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYG 313
VL+AL + I ++ P++ + +A + G Q + ++T D G
Sbjct: 544 AVLNALSEESLINVISSPSVMVLDNHTAFISVGDQVPVLQGQTITNGGNSVQNITYRDTG 603
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
V L P+V + G + + I+ V + +A ++ R ++ V + S ++VL GL
Sbjct: 604 VQLSVRPSVNAGGLVTMDIEQSVIDVGSIDSATGQRAFLDRTINSRVAVRSSESVVLGGL 663
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
++++ G+P+L +IP+ G+LF + + TE+ + TP
Sbjct: 664 IRENSSLGDSGVPILREIPLFGSLFGTTTTDSRRTELLVIITPR 707
>gi|188993080|ref|YP_001905090.1| Type II secretory pathway component [Xanthomonas campestris pv.
campestris str. B100]
gi|167734840|emb|CAP53051.1| Type II secretory pathway component [Xanthomonas campestris pv.
campestris]
Length = 759
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 31/299 (10%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ET + A S + V+ L++ QV ++ IAEV Q G
Sbjct: 445 VSAVAETNTLLVRTSAQAWKSIRDVIEKLDV-MPMQVHIEAQIAEVTLTGRLQYGVNWYF 503
Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268
+ + PS + + + G V + ++ AL++ T
Sbjct: 504 ENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGSVTSNGVAWTFLGKNAAAIISALDQVTN 563
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322
+R L P++ + A+ G + + S +TG +SV D GV+L P V
Sbjct: 564 LRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRV 623
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370
G + L I EVS P A + R+ T + +G TI+L
Sbjct: 624 TKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAACNVDINTRRVKTEAAVQNGDTIML 683
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
AGL+ D GIP LSK+P++GALF N + E+ + TP +V+ P RDL+
Sbjct: 684 AGLIDDSTTDGSNGIPFLSKLPVVGALFGRKTQNSDRREVIVLITPSIVRNPQDARDLT 742
>gi|319944755|ref|ZP_08019019.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599]
gi|319742004|gb|EFV94427.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599]
Length = 747
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 3/202 (1%)
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ SF A S+ G L ALE + ++ P + S +
Sbjct: 548 NTNFFSFPAGGINGTNPASLAISLFGSSLSRFINLELSALEADQRGKVVSSPRVLTSSQR 607
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
A G + Y++ +SS GATSV+ + L TP + G + L +VS +G
Sbjct: 608 PAVIEQGTELPYQSATSS-GATSVSFRKANLRLEVTPQITPEGNVILD--VDVSRDAVGQ 664
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+ R T V + GGT+V+ G+ + + + +PLL IP+LG LFR++
Sbjct: 665 LTNAGYAIDTRHVKTQVLVEDGGTVVIGGIYEQFERNRTDKVPLLGDIPVLGYLFRSTTR 724
Query: 404 NREETEIFIAATPFLVKPVAMR 425
+ TE+ + TP +V +
Sbjct: 725 TNDRTELLVFLTPRIVTDTLAQ 746
>gi|238019550|ref|ZP_04599976.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748]
gi|237864249|gb|EEP65539.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748]
Length = 421
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 65/275 (23%), Positives = 118/275 (42%), Gaps = 9/275 (3%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L ++ T+ + + LSE + ++N ++ QV L+ TI +
Sbjct: 154 LSNIMGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLINAVD-KEPKQVQLEATIIAME 212
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ K+ GF+ S D + + + G +F + L +E +
Sbjct: 213 QSYAKEQGFRWS-----WLSLTGHGEDKTNSYGAVTFGKTPGGEAYKFFVKPELSLMESS 267
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324
+A+P++ A++G++A G + S G + G+ L++TP + +
Sbjct: 268 GKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 327
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
G + +I EVS P I V+ R+A T V L G +V+ GL+ + Q +
Sbjct: 328 DGGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 386
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP+L IP+LG LFR+SR ++ E+ I +V
Sbjct: 387 IPILGDIPLLGKLFRHSRKTKDSIEMLILVRANVV 421
>gi|153802182|ref|ZP_01956768.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
gi|124122256|gb|EAY40999.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
Length = 404
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 55/320 (17%), Positives = 111/320 (34%), Gaps = 49/320 (15%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
G + + V ++ + S +V+ L+I QV ++ I E
Sbjct: 24 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 82
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237
+ +G Q S S G
Sbjct: 83 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRN 142
Query: 238 ------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ + + +++A+ ++ L+ P++T + A
Sbjct: 143 ETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEA 202
Query: 286 SFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
SF G + T ++ +V + G+ L P + + L I+ EVS +
Sbjct: 203 SFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVL 262
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR+
Sbjct: 263 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRS 321
Query: 401 SRFNREETEIFIAATPFLVK 420
+ E+ + + P +++
Sbjct: 322 TSSQVEKKNLMVFIKPTIIR 341
>gi|119476023|ref|ZP_01616375.1| type II and III secretion system protein [marine gamma
proteobacterium HTCC2143]
gi|119450650|gb|EAW31884.1| type II and III secretion system protein [marine gamma
proteobacterium HTCC2143]
Length = 617
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 79/435 (18%), Positives = 149/435 (34%), Gaps = 37/435 (8%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L PS + ++N+ +I + + + ++ + D+ V +
Sbjct: 144 VLKPLLPSSGYIAAYPQSNSLIIADEAENVKRLVALVRKIDASGSI-------DIEVINL 196
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIG-HDGKQMLNLDILIERDIAHLEMTLRRFI-A 132
AD S + L G+ I +++ D R + L L + I
Sbjct: 197 LHADAENVSGLVLSLLSDTTGETFSIAPDIRSNSLLMSGDAATTRRVRQLVKQLDQPISD 256
Query: 133 DSNIRV------EMVSDTVVLHGM-------VRTIQDSQRAVELSETFLSQSGRNQYAN- 178
+ N RV E +L GM R DS + + +
Sbjct: 257 NGNTRVVYLHYLEAKEVLPILKGMGAAMQENNRNAGDSSDISIEASESSNALVMTAPPSM 316
Query: 179 -SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
+V+ ++I + ++ I EV +D + IG + + + S++ +++
Sbjct: 317 LDVMSRVIEQIDIRRAS-ILVEAIIVEVSKDFSQTIGVEWNTSLSANDGAEALTNFGLRN 375
Query: 238 FVSEGGDFSVKGVLD-----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
G + L+ S + A+ L+ P + + + A G
Sbjct: 376 IDESGAVSLLGAGLNLGFYRNGSLRVLAQAIANENDANILSSPRIMTMDNEEAEILVGSN 435
Query: 293 HLYK-------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
+ + S+ T++ HD G+ L TP + I L I EV
Sbjct: 436 VPFITGQSTGSSSSTGDPFTTIERHDIGLTLKITPQINEGDSITLDILQEVETISEATTV 495
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+ R T V + +VL GL+ DD Q+L +P L +P+LG LFR +
Sbjct: 496 ANDIVTNKRSIKTKVIVEDDAILVLGGLVSDDTQELVSKVPFLGDLPLLGGLFRTTTDTV 555
Query: 406 EETEIFIAATPFLVK 420
+ + + P +V
Sbjct: 556 VKKNLMVFIHPVIVD 570
>gi|307826274|ref|ZP_07656482.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96]
gi|307732679|gb|EFO03548.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96]
Length = 785
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 57/299 (19%), Positives = 101/299 (33%), Gaps = 33/299 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
AV + T KK++ L++ QV ++ + + +G +
Sbjct: 488 AVVDARTNTLIVRETTKRLDEVKKLIRKLDVPVR-QVMIEARVVIADDSFTENLGVKFGA 546
Query: 220 -TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------------------- 255
+S G KSFA G + G + +
Sbjct: 547 AKAASLGSGKSFAVGGSGTKGNGNLQPDANGNIGTLNDTLVDLGVAGLTATPPGALGMTL 606
Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
L AL+ ++ P + + +A G Q T ++ + T
Sbjct: 607 ARGADYVLNLELQALQIEGKGEIVSNPRVMTMDRCTAVMMQGVQIPVTTPGTANTPPTTT 666
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGT 367
D + L+ TP + G + + + N P R+ T+V + G T
Sbjct: 667 YIDAVLKLNATPQITPSGSVIMNLLITKDNANTTSNPVSGNPGIDKREIKTSVLVEDGET 726
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+VL G+ + K IP + +P +G LF NS N+ + E+ I TP ++K D
Sbjct: 727 VVLGGVYEGAESYGKNKIPFFADLPGIGFLFTNSTTNKTKKELLIFVTPKIMKDNVASD 785
>gi|83720377|ref|YP_440567.1| general secretion pathway protein D [Burkholderia thailandensis
E264]
gi|167621024|ref|ZP_02389655.1| general secretion pathway protein D [Burkholderia thailandensis
Bt4]
gi|83654202|gb|ABC38265.1| general secretion pathway protein D [Burkholderia thailandensis
E264]
Length = 744
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 52/273 (19%), Positives = 97/273 (35%), Gaps = 31/273 (11%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--- 240
V++ L+ QV ++ + E+ +G Q + ++ + G S
Sbjct: 389 VIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLPTGGVGGGNSIVD 447
Query: 241 ---------------EGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
++ + +L + L+ P L +
Sbjct: 448 LTTRAATSAVGAISTLTPGLNIGWLHNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTLDN 507
Query: 283 QSASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+ A G T +++ + D G+ LH P + G + L++ T
Sbjct: 508 EEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYT 567
Query: 335 EVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
E S V N P++ R +TV +G IVL GL++D+ Q +PLL IP
Sbjct: 568 EDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPW 627
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+G LFR+ R++T + + P ++
Sbjct: 628 IGQLFRSEGKTRQKTNLMVFLRPVIITDRETAQ 660
>gi|34499269|ref|NP_903484.1| type II secretion system protein [Chromobacterium violaceum ATCC
12472]
gi|34105120|gb|AAQ61476.1| probable type II secretion system protein [Chromobacterium
violaceum ATCC 12472]
Length = 708
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 58/322 (18%), Positives = 107/322 (33%), Gaps = 38/322 (11%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------AD 233
V++LL+ QV ++ + EV +IG Q + +G +
Sbjct: 371 NVIDLLDKR-RAQVYVEALVMEVTASRATKIGVQWAANVHGNGLIGNSLPSPSKPLVPGG 429
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVL------------------HALERATAIRTLAEP 275
G S+ L + ALE+ +A P
Sbjct: 430 SGASDTPGTALGSLVSSLTGGGLTAAIINTITVGGQQIPTLGLLAQALEQEAQGNLVASP 489
Query: 276 TLTAISGQSASFTSGGQHLYK--------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
L + + A G + +S+ ++ G L TP + G
Sbjct: 490 QLVTMDNEKAKIVIGQEIGVPTATYPAGTNGTSNAPYSTYDRKTVGFGLEITPQISEGGT 549
Query: 328 IGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I ++I +A P++ R DT V + GG + L GL ++ ++ +P
Sbjct: 550 IRMKISQAADSIDQTTLSAAAGPTFNRRTLDTVVTVGDGGLVALGGLTQETTSNAEDKVP 609
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
LL IP++G LF+ R++T + I P +++ + + Y + A
Sbjct: 610 LLGDIPVIGNLFKYQGKERKKTNLMIFIRPTIIRDEIGNR-AVAGERYGYVMEDAARNVG 668
Query: 447 RVNKIYGPKEASEVEGQNYKGA 468
R + + + GA
Sbjct: 669 RKLPLGLNDQLKTPAAGSIHGA 690
>gi|167717371|ref|ZP_02400607.1| general secretion pathway protein D [Burkholderia pseudomallei
DM98]
Length = 730
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 31/290 (10%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + + + V++ L+ QV ++ + E+ +G Q +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 423
Query: 220 TGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVK-GVLDRFSFET 258
++ + G +S G + +
Sbjct: 424 ANNALYAGTNLTTGGVGGGNSIVDLTTRAATSAVGAISTISPGLNIGWLHNMFGIQGLGG 483
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTH 310
+L + L+ P L + + A G T +++ +
Sbjct: 484 LLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRR 543
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIV 369
D G+ LH P + G + L++ TE S V N P++ R +TV +G IV
Sbjct: 544 DVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTINNQSGPTFNKRSIQSTVLADNGEIIV 603
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 604 LGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 653
>gi|257454588|ref|ZP_05619844.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60]
gi|257447898|gb|EEV22885.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60]
Length = 813
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 31/269 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ +N L+ DQV ++ I E+ + +Q+G Q ++ ++SG + G V
Sbjct: 397 ENAINELDTR-RDQVLIQAAIMEISGNDTQQLGVQWAMGNANSGVGVINFNNIGASAVGL 455
Query: 242 G----------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
G +R + +L A+ + L+ P++
Sbjct: 456 ASEILSKTPGTAAASVAGALLGIGTSKTDSNGNREFYGAILQAINKTNNANLLSMPSILT 515
Query: 280 ISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ + A+ G + T S S+T +V+ D G+ L+ P + G + L I
Sbjct: 516 LDNEKANILVGQNVPFVTGSYTTASNSSTTPFQTVSRQDVGINLNVIPHIGDNGSVRLEI 575
Query: 333 QTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
EVS V G N TT+ T+ L GL++D+ ++ +P L
Sbjct: 576 SQEVSSIVDGTLNNVSGVVTNKNLIKTTILADDQQTVALGGLMRDNSTYGQQKVPGLGDA 635
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
PILG LFR+ N ++T + + P +++
Sbjct: 636 PILGNLFRSKSKNSDKTNLIVFLQPTILR 664
>gi|330815003|ref|YP_004358708.1| General secretory pathway protein D [Burkholderia gladioli BSR3]
gi|327367396|gb|AEA58752.1| General secretory pathway protein D [Burkholderia gladioli BSR3]
Length = 787
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 59/331 (17%), Positives = 108/331 (32%), Gaps = 46/331 (13%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------- 236
V++ L+ QV ++ I E+ +G Q + ++ S + G
Sbjct: 393 VIDQLDER-RAQVYIEALIVELNSSTSANLGIQWQVANNALYAGSSLGSGINGVGNTITN 451
Query: 237 ----------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+K + +L A + L+
Sbjct: 452 LTATAATTSLPNGVNSAAAAAATLSPGLNIGWLKNMFGITGLGALLQAFSGSNDANILST 511
Query: 275 PTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
P L + + A G + S+S + D G+ LH P + G
Sbjct: 512 PNLVTLDNEEARIVVGQNVPIATGSYANLTSGSNSNAFNTFDRQDVGLTLHVKPQITEGG 571
Query: 327 RIGLRIQTEVSEPVIGVNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
+ L+I TE S V + +P++ R +TV +G IVL GL++D+ Q
Sbjct: 572 ILKLQIYTEDSSVVPSATSSGSSSSQVGVPTFNKRSIQSTVLCDNGEIIVLGGLMQDNYQ 631
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVED 438
+PLL IP +G LFR+ R +T + + P ++ + ++ Y
Sbjct: 632 VGNNKVPLLGDIPWIGQLFRSEAKQRSKTNLMVFLRPVILSDEATTQAVTANRYDYIQGV 691
Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
N + + + +G
Sbjct: 692 QGAYKSDNNLIRDKDDPVTPPMPLGPSQGGA 722
>gi|118592650|ref|ZP_01550040.1| general secretion proteinD [Stappia aggregata IAM 12614]
gi|118434701|gb|EAV41352.1| general secretion proteinD [Stappia aggregata IAM 12614]
Length = 789
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 62/282 (21%), Positives = 120/282 (42%), Gaps = 9/282 (3%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L R+ +++ V + V+ L++ QV ++ TI EV
Sbjct: 452 LADTRRSSEEAVSIVPDVRNNALLVHSKFRQFKRIRDVVRTLDVPL-AQVVIEATIVEVA 510
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ + G Q ++G S D +D + VL AL+
Sbjct: 511 LNDRLKYGVQAFLSGEGVEIRSSRLPDPADTGEPGAVALFDVDSVDGTTATFVLEALQTV 570
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFT 319
T ++ ++ P LT + G++A + G Q + ++ + D GV+L T
Sbjct: 571 TELKVISSPYLTVLDGKAARLSVGDQIPFLVQQTNASETGTTTTTNQIEVRDVGVILQVT 630
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
P++ + L +Q EVS + ++ P R ++ V + SG +L GL++
Sbjct: 631 PSIRPDNSVLLNVQQEVSSAKSSGSGENLTPVISQRTINSDVVIESGKMALLGGLIQSRS 690
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+++ +PL+SK+PI+G LF+ + ++ TE+ + TP +V+
Sbjct: 691 EEVTTKVPLMSKMPIVGNLFKQTDAVKDRTELLVMITPRVVR 732
>gi|297537339|ref|YP_003673108.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
gi|297256686|gb|ADI28531.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
Length = 608
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 58/299 (19%), Positives = 114/299 (38%), Gaps = 41/299 (13%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---------AADFG 235
++ + + + QV ++ TI EV + + G S GS F A +
Sbjct: 306 IDKVMGSAKKQVLIEATIVEVTLNDGYKAGIDWSRLGSLGSAGFVFKQALGPQLGAVNSA 365
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ + LE+ + L+ P L ++ Q+A +Y
Sbjct: 366 ANVTLSSSGIIAGYTNGNRGILSSVQLLEQFGNTKVLSSPKLMVLNNQTAVLKVVDNLVY 425
Query: 296 KTVSSS--------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---- 337
TV S + T+ T GVV+ TP + G + + ++ ++
Sbjct: 426 FTVQSQISQSASGVAGTNLQSVTTTPNTVPVGVVMSVTPQINDTGNVNINVRPTITSLIR 485
Query: 338 -------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ + +P R R+ ++ +++ SG VL GL++D+I+ E +P LSK
Sbjct: 486 YVPDPNPQIQKSPDFQGIPEIRTREMESLLQISSGNIAVLGGLMQDEIKNSTEAVPGLSK 545
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV-------KPVAMRDLSRPDDHYSVEDDAKA 442
+P +G +F+ + ++TE+ I P ++ +A P +A+A
Sbjct: 546 VPGVGKVFQGKNDSNQKTELVIFLRPTVIPNASLESDELAHYKQYLPTQALERASEAEA 604
>gi|196233728|ref|ZP_03132568.1| type II and III secretion system protein [Chthoniobacter flavus
Ellin428]
gi|196222242|gb|EDY16772.1| type II and III secretion system protein [Chthoniobacter flavus
Ellin428]
Length = 621
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/336 (15%), Positives = 98/336 (29%), Gaps = 59/336 (17%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV ++ + EV + + G T SS ++F+ S+ +
Sbjct: 259 TQQVMIEARLVEVTANPKQSYGINWGGTVGSSSTPQTFSYGAPTVPGSQSVNLQTNPTTG 318
Query: 253 R------------------------------------------------FSFETVLHALE 264
+ S L L
Sbjct: 319 QVTPVIVNSQLPQLVTTNGKLTPGDFLMNGETRGGFGDLLASQFAILTVPSMSATLRLLN 378
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTHDYGVVLHFT 319
+ LA P + + Q A+ ++ + ++G L T
Sbjct: 379 EDSDAEFLAHPRVVTANNQKATIKIVRNQPIPQLNFNEQTAQAVFSGFQDKEFGNTLIVT 438
Query: 320 PTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
P++ I + +Q E+S P R D+ V + SG T+ + GL
Sbjct: 439 PSINKDDFISMSVQPEISNKVADATFTFSGATVTSPVIDKRTLDSNVVIKSGDTLAIGGL 498
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
L+D++ + + +P++ IPILG F+ R + + I TP ++K L
Sbjct: 499 LQDEVTKGRTKVPVIGDIPILGYAFQERLNVRTKRNLLIFVTPTIIKQGYGTGLEDQVTG 558
Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
+ A N G + +
Sbjct: 559 LHHSGEEYADPNGWRNNARGAVRLAPTAERQLAADY 594
>gi|329848228|ref|ZP_08263256.1| general secretion pathway protein D [Asticcacaulis biprosthecum
C19]
gi|328843291|gb|EGF92860.1| general secretion pathway protein D [Asticcacaulis biprosthecum
C19]
Length = 617
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 63/334 (18%), Positives = 124/334 (37%), Gaps = 15/334 (4%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
+ + + + +++ + M+ + A S + G +
Sbjct: 257 TTIRVWVYHPQGASAENLVKTLNAVVGTMSDVQVPAGS---ATSTGEAAAPAGTSSAPES 313
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIG 214
+ + V + + + ++ ++ +L+ QV ++ +I EV G
Sbjct: 314 NSQGVRIVADKATNTVIINAPEATRVRLQEVLSEIDREPAQVFIEASIVEVTLTKDLSYG 373
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
S+ S S + F FS+ + + + AL + +R ++
Sbjct: 374 VDWEAIASNGDLSVSHFSTRSTGFGQIAPGFSINYLGN--DISAAVTALSSQSKVRIVSA 431
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGR 327
P + + A G Q T ++ + SV D GV+L TP + R
Sbjct: 432 PKVATVENMPAVLQVGDQVPVVTQTAQSVVNGDAPVVNSVDYRDTGVMLKVTPRITGTNR 491
Query: 328 IGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L + EVS + D P+ RK D+++ +P G + L GL+ Q GIP
Sbjct: 492 ILLEVSQEVSSVARTQTSGIDSPTINQRKLDSSLIVPEGTVVALGGLISSSDSQSDSGIP 551
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L IP++G +F+ NR TE+ + +++
Sbjct: 552 GLKDIPLIGGVFKGQSHNRNRTELIVLLKARILR 585
>gi|161523243|ref|YP_001578255.1| general secretion pathway protein D [Burkholderia multivorans ATCC
17616]
gi|160340672|gb|ABX13758.1| general secretion pathway protein D [Burkholderia multivorans ATCC
17616]
Length = 775
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 56/300 (18%), Positives = 102/300 (34%), Gaps = 41/300 (13%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ I E+ Q+G Q +
Sbjct: 374 IQADAATNSLIITASDPVYRNLRAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQV 432
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255
+ + AA G + + + V
Sbjct: 433 ASGALLAGTNLAATAGSVAGNSIINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLH 492
Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SS 300
+L + L+ P L + + A G T ++
Sbjct: 493 NMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTT 552
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTT 359
S + D G+ LH P + G + L++ TE S N+ PS+ R +T
Sbjct: 553 SNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNSQTGPSFTKRSIQST 612
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G IVL GL++D +PLL IP +G LFR+ R++T + + P ++
Sbjct: 613 ILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII 672
>gi|254184073|ref|ZP_04890664.1| general secretion pathway protein D [Burkholderia pseudomallei
1655]
gi|184214605|gb|EDU11648.1| general secretion pathway protein D [Burkholderia pseudomallei
1655]
Length = 751
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 31/290 (10%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + + + V++ L+ QV ++ + E+ +G Q +
Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 430
Query: 220 TGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVK-GVLDRFSFET 258
++ + G +S G + +
Sbjct: 431 ANNALYAGTNLTTGGVGGGNSIVDLTTRAATSAVGAISTISPGLNIGWLHNMFGIQGLGG 490
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTH 310
+L + L+ P L + + A G T +++ +
Sbjct: 491 LLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRR 550
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIV 369
D G+ LH P + G + L++ TE S V N P++ R +TV +G IV
Sbjct: 551 DVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTINNQSGPTFNKRSIQSTVLADNGEIIV 610
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 611 LGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 660
>gi|307293364|ref|ZP_07573210.1| general secretion pathway protein D [Sphingobium chlorophenolicum
L-1]
gi|306881430|gb|EFN12646.1| general secretion pathway protein D [Sphingobium chlorophenolicum
L-1]
Length = 716
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 59/293 (20%), Positives = 111/293 (37%), Gaps = 57/293 (19%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+QV ++ I E+ K++G Q I + +G + + ++ ++ G + + +
Sbjct: 348 TRREQVLVEAIIVEISDAAAKKLGVQFLIGSTKTGFAATNYSNAQPNLLTIAGAVAAREL 407
Query: 251 LDRFS---------------------------------------------------FETV 259
D + F +
Sbjct: 408 GDSTTVEVNNGTTTTTTRSRNSSDLESTLQEAAFNSLTGASGIIGGLGTQIGRNGIFGAI 467
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGV 314
++A++ T L+ P++ + Q AS G Q T + +V D G+
Sbjct: 468 INAVKSDTDSNILSTPSVMTLDNQKASILVGQQVPITTGEALSQNFDNQFRTVQRQDVGI 527
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
L P + + G I L ++ EVS V N+ R+ +TTV + G + L GL
Sbjct: 528 KLEVKPQINTGGAIKLFLKQEVSSVAGPVSNSNTDLIINKREIETTVTVDDGEILALGGL 587
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
L D+ ++ E IPLLS IP +G LF++ +R +T + + P +++
Sbjct: 588 LDDNERKTIERIPLLSDIPGIGELFKSRSKSRTKTNLMVFIRPTILRSKEDAQ 640
>gi|189348900|ref|YP_001944528.1| general secretion pathway protein D [Burkholderia multivorans ATCC
17616]
gi|189332922|dbj|BAG41992.1| general secretion pathway protein D [Burkholderia multivorans ATCC
17616]
Length = 768
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 56/300 (18%), Positives = 102/300 (34%), Gaps = 41/300 (13%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ I E+ Q+G Q +
Sbjct: 367 IQADAATNSLIITASDPVYRNLRAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQV 425
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255
+ + AA G + + + V
Sbjct: 426 ASGALLAGTNLAATAGSVAGNSIINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLH 485
Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SS 300
+L + L+ P L + + A G T ++
Sbjct: 486 NMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTT 545
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTT 359
S + D G+ LH P + G + L++ TE S N+ PS+ R +T
Sbjct: 546 SNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNSQTGPSFTKRSIQST 605
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G IVL GL++D +PLL IP +G LFR+ R++T + + P ++
Sbjct: 606 ILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII 665
>gi|108759429|ref|YP_633909.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622]
gi|108463309|gb|ABF88494.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622]
Length = 901
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 49/287 (17%), Positives = 97/287 (33%), Gaps = 35/287 (12%)
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
T + + ++ ++ L+ QV ++ I E + +G Q +
Sbjct: 609 RTNVLIVKDVRSNTERARSLVRSLDTQTP-QVLIESRIVEANTSFSRSLGVQWGGQARAG 667
Query: 225 GPSKSFAA-------------------------------DFGGKFVSEGGDFSVKGVLDR 253
+ + G+ V F+
Sbjct: 668 QATGNSTGLIFPNNLAVTGGVTGTGAGLPDNPNFAVNLPTGTGQGVGGAMGFTFGSAGGA 727
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
L A E +++T++ P +T + +A +S + T +
Sbjct: 728 LQLNLRLSAAENEGSVKTISAPKVTTLDNNTARI--SQGVSIPFSQTSAQGVNTTFVEAR 785
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAG 372
+ L TP + G + + I ++P PS + ++A+T V + G T V+ G
Sbjct: 786 LSLEVTPHITQDGSVLMSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGG 845
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +P LS+IP+LG LF+N+ E+ I TP ++
Sbjct: 846 IYVRRGATQVNSVPFLSRIPVLGLLFKNNSETDTRQELLIFITPRIL 892
>gi|325926645|ref|ZP_08187959.1| general secretion pathway protein D [Xanthomonas perforans 91-118]
gi|325542997|gb|EGD14446.1| general secretion pathway protein D [Xanthomonas perforans 91-118]
Length = 763
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 70/306 (22%), Positives = 116/306 (37%), Gaps = 34/306 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ET A SS + V+ L++ QV ++ +AEV G
Sbjct: 444 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGALSYGVNWYF 502
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--------------SFETVLHALER 265
+ + S S FGG + ++ G + + ++ AL++
Sbjct: 503 ENAVNAASDSTTYGFGGAGLPSAAGRNIWGDIAGKVTGTEGLAWSFLGKNAAAIITALDK 562
Query: 266 ATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
T +R L P++ + A+ + + + T +SV D GV+L
Sbjct: 563 VTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGIGTDTSYSSVQYIDTGVILKVR 622
Query: 320 PTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
P V G + L I EVS P A R+ T + SG TI
Sbjct: 623 PRVTKDGMVFLDIVQEVSSPGDRPAACTSATATINAAACNVDINTRRVKTEAAVQSGDTI 682
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
+LAGL+ D +G+P LSK+P++GALF E+ + TP +V+ ++
Sbjct: 683 MLAGLIDDTTSDTSDGVPFLSKLPVVGALFGTKGKTSNRREVIVLITPSIVR--NPQEAR 740
Query: 429 RPDDHY 434
D Y
Sbjct: 741 NLTDEY 746
>gi|149925604|ref|ZP_01913868.1| type II and III secretion system protein [Limnobacter sp. MED105]
gi|149825721|gb|EDM84929.1| type II and III secretion system protein [Limnobacter sp. MED105]
Length = 807
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/276 (19%), Positives = 94/276 (34%), Gaps = 34/276 (12%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
++ L++ QV ++ I EV D + G Q G
Sbjct: 424 SIIEKLDVR-RAQVFVESLIVEVSTDKAAEFGIQFQGLSGVGADGVRVIGGTNFNDPGSG 482
Query: 243 GDF-----------------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
+ ++ G+ + + ALE L+ P +
Sbjct: 483 SNILGAATNLGSVGRGLNIGVIDGQVNIPGIGTISNLGFLARALESKANANILSTPNILT 542
Query: 280 ISGQSASFTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + A G + T + ++ D G+ L P V G + L
Sbjct: 543 LDNEEAKIVIGQNVPFITGQFTNSGGNGATVNPFQTIERQDVGLTLRVKPQVSEGGIVKL 602
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
I EVS V N + R ++ V + +G IVL GL++D + +E +P L
Sbjct: 603 GIFQEVSSVVDSTNVSGI-ITNKRSIESNVLVETGNIIVLGGLVEDRVTGNEEKVPGLGD 661
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+P+LG FR R++T + + P +V+
Sbjct: 662 VPVLGQFFRYDNRRRQKTNLMVFLRPVVVRNEDQAQ 697
>gi|91787225|ref|YP_548177.1| type II and III secretion system protein [Polaromonas sp. JS666]
gi|91696450|gb|ABE43279.1| type II and III secretion system protein [Polaromonas sp. JS666]
Length = 747
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 79/370 (21%), Positives = 128/370 (34%), Gaps = 50/370 (13%)
Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
+ L D L TLR +A + + V+ G S A + L+ S
Sbjct: 313 VVYLKNADATKLATTLRAAMAANTLGAIAAGP--VVTGAPLPGPGSVAAAGAATATLTSS 370
Query: 172 GRNQYANSSSKKVMNLLNIAGED------------------QVTLKVTIAEVRRDILKQI 213
+ + N L I + QV ++ IAEV D +
Sbjct: 371 QPSTGGQIQADPSTNSLIITAPEPLYRQLRAVIDKLDARRAQVFVESLIAEVNADKAAEF 430
Query: 214 GFQHSI------------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
G Q G ++ + + A G S G + V + +
Sbjct: 431 GIQFQGALGKKGDNNIGLLGTNFNIGGTNIITLATQAAAGVIAPSTGANLGVAHLTNGVY 490
Query: 256 FETVL-HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------- 305
L LE A L+ P L + + A G + T + T
Sbjct: 491 VLGFLARFLEANGAGNILSTPNLLTLDNEEARIVIGQNVPFITGQYTNANTSAGSVNPFQ 550
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
++ D G+ L P + G + ++I EVS +N+ R ++ V +
Sbjct: 551 TIERKDVGLTLRVKPQISENGTVKMQIFQEVSSVQPSSINSATGLITNKRSIESNVLVDD 610
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G +VL GLL+D+ E +P L IPILG LF+ +R++T + + P +V+ A
Sbjct: 611 GAIVVLGGLLQDEYSGNVEKVPGLGDIPILGHLFKGETRSRKKTNLMVFLRPVVVRD-AP 669
Query: 425 RDLSRPDDHY 434
S D Y
Sbjct: 670 SSESLSMDRY 679
>gi|311697132|gb|ADQ00004.1| type II and III secretion system protein [marine bacterium HP15]
Length = 373
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 83/331 (25%), Positives = 133/331 (40%), Gaps = 18/331 (5%)
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+ L + + D V + S +
Sbjct: 19 PGEQHVLAFSAPLTKVSASN-PDVVSVTASAENEVLVTAEGPGSAAVRVWLQGQTSPQMT 77
Query: 181 SKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
V LL QV + I EV R L +G +S + + + + G F
Sbjct: 78 EFNVSRLLGGRRSISSQVQTDIRIVEVNRSELNTLGVYYSKLFNGGSQTIALSPPGAGGF 137
Query: 239 VSEGGDFSVKGVLD--------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
G G+ S ++++ALE TLAEP+L ++SGQ+A+F SG
Sbjct: 138 RGFGPSAGATGITTEGFNLFSFGSSSLSIINALESGGFAYTLAEPSLVSLSGQTATFLSG 197
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAG 346
G+ VSS G + ++GV L TPTV+S I L++ EVSE +
Sbjct: 198 GEFPIP-VSSDNGEVEIEFKEFGVSLALTPTVVSDDEIILKVAPEVSELDFTSGVSTGGV 256
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+P R+R+ TTV + G + +++GL+ + IP L +P++GA FR+ R E
Sbjct: 257 AVPGLRIRRTQTTVTMAPGESFIISGLVSRATTNRSDRIPGLGNLPVIGAFFRSDRVASE 316
Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ E+ + TP V A + LSR ++
Sbjct: 317 DKELIMVVTPKFV--SAQKQLSREARNFGKA 345
>gi|791156|gb|AAA65694.1| mannose-sensitive hemagglutinin D [Vibrio cholerae]
Length = 559
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 57/263 (21%), Positives = 94/263 (35%), Gaps = 34/263 (12%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235
QV + I EV Q G S SS+G + + G
Sbjct: 273 RMHRQVISEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPG 332
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392
Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
T SS + ++T G+ L TP + G + L + V E
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452
Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ +R++D+ + G +V+ GL+K + +P L +P LG
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFRN+ ++TE+ I P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535
>gi|260654164|ref|ZP_05859654.1| putative bacterial type II/III secretion system short domain
protein [Jonquetella anthropi E3_33 E1]
gi|260631149|gb|EEX49343.1| putative bacterial type II/III secretion system short domain
protein [Jonquetella anthropi E3_33 E1]
Length = 531
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 72/403 (17%), Positives = 130/403 (32%), Gaps = 52/403 (12%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISI---GLNKVIILQVPVDVQDVLVSDPTK 76
A + +S E+ + + GL II+ P V +S
Sbjct: 133 GAPSAGCAKPAGQKEKRLTMSLTEVKVADALRLAAEGLKCSIIVDEPETSPTVTLS---L 189
Query: 77 ADVVVHSPRTMYL----FG-KNVGQA------NVILIGHDGKQMLNLDILIERD--IAHL 123
DV + +G +G +V+ + + D+ L
Sbjct: 190 RDVTAQEALELITASAGYGWAKIGSTILVGPRSVLAARLGKNGLKSYDVFWADPGKTGAL 249
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
++ + D + V+ + + + G ++ EL +
Sbjct: 250 VKSIVGLVGDDAVSVDERRNRIYVKGT---PAQQEQVRELLAQLDEPA------------ 294
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
DQV +K I EV D ++ S S G F S
Sbjct: 295 ----------DQVMIKARIIEVNDDATSEMESVLQAVYHQWWLSFSSGVASLGFFDSSSP 344
Query: 244 DFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G + + L R LA+PT+ + G A+ + Y +
Sbjct: 345 LAPSSGTAQGAGTVARMLDARIAGLVEKGKARVLADPTVVVLDGHKATIKLVDRVKYVSW 404
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRK 355
G + + G L TP V S G + + + E+ + G D+P R+
Sbjct: 405 RDDAGNPGYSDEEVGPRLEVTPRVGSEGGMTISMALKTGEIVQWKRGGLGEDVPQISERE 464
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
++V + G V+ GL K+ + + + IP+L +P+LG+LF
Sbjct: 465 VSSSVRVLDGQPFVVGGLFKESVSKTTQRIPVLGDLPLLGSLF 507
>gi|269792653|ref|YP_003317557.1| type II and III secretion system protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100288|gb|ACZ19275.1| type II and III secretion system protein [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 589
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 61/346 (17%), Positives = 131/346 (37%), Gaps = 28/346 (8%)
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMV--SDTVVLHGMVRTIQDSQRAVELSETFL 168
++ + +L + + + + D + V+T+ + R + + E
Sbjct: 243 TYAVMGRTILVGKADSLAKSLGQEKTKAFEISYGDVKQISAQVQTLFEITRPIAVDERLR 302
Query: 169 SQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
+ ++ ++ +N + G+ QV L+ I EV+ D ++++ + S
Sbjct: 303 VMYVTGRPEQLAAVERFLNAADHPGK-QVMLQARIVEVKDDGVRELESVVNTVYRYWWLS 361
Query: 228 KSFAADFGG-----------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
S G ++ + + ALE A +
Sbjct: 362 FSSKGGVLGYSRINQESVYKNDTNRVTKPGATDISAIAESGGLSLLDAGIKALENADKGK 421
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
TLA P++ + G+ A + Y + G + + G + F PTV G + +
Sbjct: 422 TLASPSVVVVDGKEAKISLTENIKYISARDQAGNPTYSEEKVGPTMEFLPTVGRDGFVTI 481
Query: 331 RIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
++ EV++ + G ++P R+ + V + G V+ GL +D + IP+
Sbjct: 482 KMTLKTGEVTKYIKGGLGEEVPQTSTREVTSYVRVRDGEPFVVGGLFRDSNTFSEYRIPV 541
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK----PVAMRDLSR 429
LS IP++G LF++ +E E+ + P ++ PV ++
Sbjct: 542 LSDIPLIGELFKSRTKKKERGEVAMIVIPHILDVPGSPVKTSEVHL 587
>gi|88797633|ref|ZP_01113222.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297]
gi|88779805|gb|EAR10991.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297]
Length = 709
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 55/254 (21%), Positives = 96/254 (37%), Gaps = 37/254 (14%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS------------------------ITGSSSGPSKS 229
+QV ++ I R + Q+G + I G S P +
Sbjct: 460 EQVLIEARIVSARTSVGDQLGVRWGGAIFPSQNVFATGTVESSASIESDIYGGSPNPDLT 519
Query: 230 FAADFGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
F F + G S L + + + ALE +++P + GQ+AS
Sbjct: 520 FPDAFAVNLPATGNASSFAVGLIADNLLDLDLEISALESLGEAEVVSQPKIVTSDGQAAS 579
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
SG + T + G+ L+ TP V ++ L + G
Sbjct: 580 IFSGQNVAFPAEDGGT-----QFIEAGLNLNVTPQVTPDDKVILTLTVNQDSLAAGGG-- 632
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ T V + +G T+VL G+ + + QL E P+L +P++G LF+ + + E
Sbjct: 633 ---AIDTNTVSTQVLVENGVTLVLGGVYRTEKTQLVEKAPILGDLPVVGNLFKRTTTSDE 689
Query: 407 ETEIFIAATPFLVK 420
+E+ I TP L++
Sbjct: 690 RSELLIFITPKLIQ 703
>gi|42522439|ref|NP_967819.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100]
gi|39574971|emb|CAE78812.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100]
Length = 726
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 55/328 (16%), Positives = 121/328 (36%), Gaps = 22/328 (6%)
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
LE R S +V+ + + + D R V T + +
Sbjct: 405 LEPLKVRMFPVSYAKVDELEKKIK-----DFLGDRGRVVGDVRTNALVVTDIEENLERAA 459
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSF 230
+++ L+ QV+++ I E + + IG S TG+ + PS +
Sbjct: 460 RLIASLD-TQPAQVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSFNV 518
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
G + + +V + + L E ++ ++ P + +S + A
Sbjct: 519 NQSAAGSSGALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQT 578
Query: 291 GQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTE--VSEPVIGVNAG 346
+ + V+ + AT + L TP V + G + +++ +
Sbjct: 579 TEVPVRQVTQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQ 638
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ R+A+T V + +G T V+ G+ + D + G+P ++P + LF+ ++E
Sbjct: 639 GAFAVNSREANTRVLVKNGQTAVIGGIYQSDATDGEVGVPWFRELPFVSYLFKTKNISKE 698
Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHY 434
++E+ I TP ++ + + +
Sbjct: 699 KSELLIFLTPRIMGQIDNNAGNPTTTDF 726
>gi|11559475|dbj|BAB18788.1| GspD [Burkholderia cepacia]
Length = 783
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/277 (19%), Positives = 98/277 (35%), Gaps = 41/277 (14%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
V++ L+ QV ++ I E+ +G Q + + A G +
Sbjct: 400 SVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLAPTAGNGLGNSI 458
Query: 243 GDFSVKGVLDRFS-------------------------------FETVLHALERATAIRT 271
+ + G+ + +L +
Sbjct: 459 INLTAGGLTNAAGGITGGGLASNLGQLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANV 518
Query: 272 LAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVL 323
L+ P L + + A G + ++S + D G+ LH P +
Sbjct: 519 LSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQIT 578
Query: 324 SPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
G + L++ TE S V N+ P++ R +T+ +G IVL GL++D+ Q
Sbjct: 579 DGGILKLQLYTEDSAVVNGTTNSQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSN 638
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+PLL IP +G LFR+ R +T + + P ++
Sbjct: 639 SKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII 675
>gi|260220229|emb|CBA27559.1| Fimbrial assembly protein pilQ [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 696
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 66/369 (17%), Positives = 134/369 (36%), Gaps = 39/369 (10%)
Query: 87 MYLFGKNVG--QANVILIGHDGKQMLN---LDILIERDIAHLEMTLRRFIADSNIRVEMV 141
+ L K +G + +L ++ LD+ + +LE + + + +
Sbjct: 324 IILQAKGLGMRKTGNVLWVAPKDEIAAKEKLDLETVVAVQNLEPLRTQAFQINYGKAADI 383
Query: 142 SDTVVLHGMVRTI-QDSQRAVELSETFLSQSGRN----QYANSSSKKVMNLLNIA--GED 194
+ ++ G + R + + + ++ N S ++V L+
Sbjct: 384 AAGLIAAGSGPGQGVTASRILSSRGSVIFETRTNQLFVTDIPSKLEQVQQLIAKIDIAVR 443
Query: 195 QVTLKVTIAEVRRDILKQIGFQHS--------------------ITGSSSGPSKSF---- 230
QV ++ I E K +G + + GS++ S +F
Sbjct: 444 QVLIEARIVEASDSFGKSLGVKLGGGGTAAASGDKPGIALGSSYVVGSAATTSGNFVNLP 503
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ G S+ G + ALE + ++ P + A G
Sbjct: 504 STGALGSSTPGQFAVSIFGAGADRFLNLEISALEAEGKGKVVSSPRVVTADQIKALIEQG 563
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
+ Y+ V+SS+GATS+ + L P + G I L +V++ +G + +
Sbjct: 564 TELPYQ-VASSSGATSIAFRKANLKLEVLPQITPEGNIIL--TLDVTKDTVGQSTPAGFA 620
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ T V + +GGT+V+ G+ + + +P +P LG LFRN + E+
Sbjct: 621 IDTKHVQTQVLVENGGTVVIGGIFTESSTDSETKVPFFGDLPGLGVLFRNRAKEITKREM 680
Query: 411 FIAATPFLV 419
+ TP ++
Sbjct: 681 LVFITPKVI 689
>gi|255595286|ref|XP_002536270.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus
communis]
gi|223520239|gb|EEF26113.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus
communis]
Length = 536
Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats.
Identities = 65/359 (18%), Positives = 133/359 (37%), Gaps = 42/359 (11%)
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
G V + D E I + + + I+ + +D L +
Sbjct: 177 GNTLVFAPKEEIAARRKQDQEQENQIDETKPLVTQSF---QIKYQKAADIKTLISDPKQP 233
Query: 155 QDSQRAVELSETFLSQS--GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
S+R + + + + + ++++N ++I QV ++ I + K
Sbjct: 234 LLSKRGTAVVDPSTNTMFVKDIDTSMTKIQEILNKIDIPSR-QVLIESRIVQANDTFGKS 292
Query: 213 IGFQHSITGSSSGPSKSFAAD---------------------------------FGGKFV 239
+G + + +++ +K
Sbjct: 293 LGARFGVVKNNALTAKGLNPGNDVLTSGSLSSTYATGQAKQTTTPDDLNVNLPASATAGT 352
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
++ + F L A E + I+T++ P + + Q+A+F +G + Y+ +
Sbjct: 353 VSSAALTLLRLPAGFLLNMELSAAESDSKIKTISSPRVITANQQTATFDAGTEIPYQQAT 412
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
SS GATSV+ + ++ TP + +I L EV++ +G +PS K T
Sbjct: 413 SS-GATSVSFKKATLGVNVTPQITPDDKINLD--IEVTKDDVGQIFNGVPSIDTNKVKTK 469
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V + +G T VL G L + + +P S IP++G LF+++ + E+ TP +
Sbjct: 470 VLVDNGETAVLGGFLIESKNDSNQRVPFFSSIPVVGNLFKSTLNTHSKKELLFFITPKI 528
>gi|221202224|ref|ZP_03575259.1| general secretion pathway protein D [Burkholderia multivorans
CGD2M]
gi|221208715|ref|ZP_03581714.1| general secretion pathway protein D [Burkholderia multivorans CGD2]
gi|221214336|ref|ZP_03587308.1| general secretion pathway protein D [Burkholderia multivorans CGD1]
gi|221165991|gb|EED98465.1| general secretion pathway protein D [Burkholderia multivorans CGD1]
gi|221171347|gb|EEE03795.1| general secretion pathway protein D [Burkholderia multivorans CGD2]
gi|221178018|gb|EEE10430.1| general secretion pathway protein D [Burkholderia multivorans
CGD2M]
Length = 768
Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats.
Identities = 57/300 (19%), Positives = 102/300 (34%), Gaps = 41/300 (13%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ I E+ Q+G Q +
Sbjct: 367 IQADAATNSLIITASDPVYRNLRAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQV 425
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255
+ + AA G + + + V
Sbjct: 426 ASGALLAGTNLAATAGSVAGNSIINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLH 485
Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SS 300
+L + L+ P L + + A G T ++
Sbjct: 486 NMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTT 545
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTT 359
S + D G+ LH P + G + L++ TE S NA PS+ R +T
Sbjct: 546 SNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNAQTGPSFTKRSIQST 605
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G IVL GL++D +PLL IP +G LFR+ R++T + + P ++
Sbjct: 606 ILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII 665
>gi|223938688|ref|ZP_03630578.1| type II and III secretion system protein [bacterium Ellin514]
gi|223892676|gb|EEF59147.1| type II and III secretion system protein [bacterium Ellin514]
Length = 785
Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats.
Identities = 53/265 (20%), Positives = 96/265 (36%), Gaps = 23/265 (8%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQH---------------SITGSSSGPSKSFAADFGGKFV 239
QV ++ I EV D + +G + +I +FA+
Sbjct: 493 QVLIEAIIMEVTLDDTRDLGVSYLQTSPSGNNYFQGIGAIKNGPFASFSNFASTATNAAN 552
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
S FS + F + A I L+ P + +A+ G Y T +
Sbjct: 553 SLPSGFSYLAQFNN-DFSATITAAATDNRINVLSRPRIQTSHAVTANLQIGDTVPYVTGT 611
Query: 300 -----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYR 352
+ ++ G+ L TP + G + + I +V + + +P+
Sbjct: 612 YFGGLNGQASSQYQQTFVGINLQVTPLINPDGLVVMDITQDVQQLGTPTIIDNNPVPTTT 671
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R A V + TI+L G + + K G+PLL IP+LG LFR++ + + TE+ +
Sbjct: 672 KRTAQAKVSVKDRDTIILGGFISSTKSRSKSGVPLLMNIPVLGYLFRSTSDSNKRTELIV 731
Query: 413 AATPFLVKPVAMRDLSRPDDHYSVE 437
P ++ L + +
Sbjct: 732 LIRPTVLPTPEAAALVATRERDRLP 756
>gi|107021570|ref|YP_619897.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054]
gi|116688086|ref|YP_833709.1| general secretion pathway protein D [Burkholderia cenocepacia
HI2424]
gi|105891759|gb|ABF74924.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054]
gi|116646175|gb|ABK06816.1| general secretion pathway protein D [Burkholderia cenocepacia
HI2424]
Length = 774
Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats.
Identities = 52/269 (19%), Positives = 94/269 (34%), Gaps = 33/269 (12%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
V++ L+ QV ++ I E+ + +G Q + + G
Sbjct: 399 SVIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQVASGQFLGGTNLNPTGGLGNSIIN 457
Query: 236 ----------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
+ + +L + L+ P L
Sbjct: 458 LTTGGTAATAGLAANLANLNQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLIT 517
Query: 280 ISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+ + A G + ++S + D G+ LH P + G + L+
Sbjct: 518 LDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQ 577
Query: 332 IQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ TE S V NA P++ R +T+ +G IVL GL++D+ Q +PLL
Sbjct: 578 LYTEDSAVVAGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGD 637
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
IP +G LFR+ R +T + + P ++
Sbjct: 638 IPWIGQLFRSETKQRAKTNLMVFLRPVII 666
>gi|262193577|ref|YP_003264786.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365]
gi|262076924|gb|ACY12893.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365]
Length = 1269
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 51/260 (19%), Positives = 86/260 (33%), Gaps = 34/260 (13%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---FGGKFVSEGGDFSV 247
Q+ ++ I E R ++ G Q + + F + GG S+ V
Sbjct: 1003 TQTPQIQIEARIVEARSTFAREFGVQWGGSLLDANTGLVFPGNYGVVGGNTDSQTVGTGV 1062
Query: 248 K---------------------------GVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
V + L ALE +R ++ P +T +
Sbjct: 1063 AAASPDFAVNLPAATGTGAGGALGFAFGSVGGGLNLTLRLSALEDTGTVRIISAPKITVL 1122
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
+ A S + L TP V I + +Q + +E
Sbjct: 1123 NNVEA--EISQGVSIPISVISANGVQTQFVQADLSLEVTPHVSQRDCSIAMDLQIQKNEA 1180
Query: 340 VIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
P+ ++A TTV + T V+ G+ + +P L +P+LG LF
Sbjct: 1181 DFVNTGARGDPTILRKEASTTVLVADNETTVIGGIYTRNSGLSYSKVPFLGDLPLLGWLF 1240
Query: 399 RNSRFNREETEIFIAATPFL 418
+N R N E TE+ + TP +
Sbjct: 1241 KNRRENDERTEVLVFITPRI 1260
>gi|83648789|ref|YP_437224.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC
2396]
gi|83636832|gb|ABC32799.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC
2396]
Length = 561
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 54/277 (19%), Positives = 103/277 (37%), Gaps = 29/277 (10%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------SSS 224
++ ++ ++ + + QV L+V I EV + + G S S
Sbjct: 259 ATPSELTAVEEYLDKAQLVMQRQVILEVKILEVVLNKGFEQGVNWSYFDEFTSKVDASGD 318
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ G + L F T+L L ++ L+ P ++ I+ Q
Sbjct: 319 PTKSLTLGQTSRSVTNPGLEGVFSAALRINDFTTLLQLLGEQGTVQVLSSPRISTINNQK 378
Query: 285 ASFTSGGQHLYKTVSSSTGAT------------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332
A G + T + AT +T G+ L TP + G + L +
Sbjct: 379 AVIKVGDDEFFVTGIETNDATTTSGTSNLISEVEITPFFSGIALDVTPQIGENGDVTLHV 438
Query: 333 QTEVSEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
VS+ + + VR+ D+ ++ +G +V+ GL+++ ++ +
Sbjct: 439 HPTVSDVEDQTKTISLGANDLVLPLAFSSVRETDSVIKARNGQVVVIGGLIRNLTEKTQA 498
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+PLL IP+LG FR R ++E+ I P +
Sbjct: 499 KVPLLGDIPLLGHAFRQKRDTELKSELVILIRPIIAD 535
>gi|91786687|ref|YP_547639.1| type II and III secretion system protein [Polaromonas sp. JS666]
gi|91695912|gb|ABE42741.1| type II and III secretion system protein [Polaromonas sp. JS666]
Length = 717
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 36/257 (14%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------------------------T 220
QV ++ I E K +G +
Sbjct: 455 RQVLIEARIVEASDTFGKSLGVRLGGRPFTLNGNRNAMFGATYIAPDITATSGAVRGQNF 514
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G+++G + + S+ + A E + ++ P +
Sbjct: 515 GTTAGDFVQLPGVGQNGYPASTFAISLFNSSVTRLLNLEISAAEADGKGKIVSSPRIVTA 574
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
A G + Y+ +SS GATS+ + L TP + G I L +V++
Sbjct: 575 DQVKALIEQGTELPYQQATSS-GATSIAFRKANLKLEVTPQITPEGNIIL--NVDVNKDS 631
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+G + + + T V + +GGT+V+ G+ + + ++ + +PLL +P +G LF+
Sbjct: 632 VGRATANGFAIDTKHIQTQVLVENGGTVVIGGIFEQNDREDETKVPLLGDLPAIGNLFKT 691
Query: 401 SRFNREETEIFIAATPF 417
++E+ + TP
Sbjct: 692 KTRTASKSELLVFITPK 708
>gi|284097759|ref|ZP_06385757.1| Type II secretory pathway, component PulD [Candidatus Poribacteria
sp. WGA-A3]
gi|283830734|gb|EFC34846.1| Type II secretory pathway, component PulD [Candidatus Poribacteria
sp. WGA-A3]
Length = 406
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 47/273 (17%), Positives = 100/273 (36%), Gaps = 15/273 (5%)
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + L+N+ QV ++ I E+ +G S
Sbjct: 132 VVNRLSGTIQVTDLHRRVEEVATFLVNVRNSLYRQVEIQARIYEIALRDEYSLGVDWSRI 191
Query: 221 GSSSGPSKSFAADFGGKFVSE--GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ A+ + + FE V+ AL+ ++ +++P +
Sbjct: 192 ALRTPKGSFKLANIITAPAGGFLSRAATAAFSFNDGDFEGVIQALQEQGDVQVVSQPRIL 251
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGL 330
++ Q A G + T +++ G V T G+VL TP + G I +
Sbjct: 252 TLNNQPALIKVGTDQSFFTSTTTQGTAGAGNIVTEQVRTVTSGLVLSVTPQISRDGWIMM 311
Query: 331 RIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ ++ V N P V+++ V + G +++ GL+++ + + +P
Sbjct: 312 DVSPIITRLTDTVESRNGSTAPVLEVKQSGGLVRIRDGQLVMIGGLIQEQLTNTERAVPF 371
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L +P+LG+ F + TE+ I P +++
Sbjct: 372 LGDLPVLGSFFSGTYQAERNTELVIFLMPRILR 404
>gi|91775689|ref|YP_545445.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
gi|91709676|gb|ABE49604.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
Length = 653
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 72/396 (18%), Positives = 142/396 (35%), Gaps = 46/396 (11%)
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V + T+ ++ + + + L D L ++ + +I ++
Sbjct: 256 KVLNDNTLLIYP-------LSRSQEYQETFVRSFYLSNTDAKKLMAMIKTVVKTKDIYID 308
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+T+V+ A+ +E + E +V L+
Sbjct: 309 EKLNTLVMRDTP-------EAIRTAEKLIMSQDM------------------AEPEVMLE 343
Query: 200 VTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
V + E+ R L+ IG ++ + G + + S GV
Sbjct: 344 VEVLEINRRSLENIGIRYPTNVSLDVQGRDTVNGTTTLTPGKLTINELKNFNSNLGVFSI 403
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTH 310
L+ L++ T LA P + + + A G + T +++ + +V
Sbjct: 404 SDPVLALNLLQQDTDTNLLANPHIRVKNREKAKIHVGDRIPVLTSVANSTGFISQTVNYI 463
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSGGT 367
+ GV L PT+L + ++I EVS + + R A T + L G T
Sbjct: 464 EVGVKLDVEPTILLRDEVSIKIGLEVSNQTDRMETSSGTVTYTIGTRNASTILRLKDGET 523
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+LAGL+++D Q++ G+P LSK+P++G LF N+ + + EI + TP ++ + +
Sbjct: 524 QILAGLMRNDEQKITNGVPGLSKLPLIGKLFNNNNNDLSKKEIALFITPRIISNLTPENA 583
Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
+ D A R + +
Sbjct: 584 IYTT--FPAGIDRSASRPGRAAEPGTVTAQAAPATP 617
>gi|21241466|ref|NP_641048.1| type II secretion system protein D [Xanthomonas axonopodis pv.
citri str. 306]
gi|21106808|gb|AAM35584.1| type II secretion system protein D [Xanthomonas axonopodis pv.
citri str. 306]
Length = 692
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 75/397 (18%), Positives = 143/397 (36%), Gaps = 43/397 (10%)
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
DP VV + + + G +V+ L +Q+L + + E + +
Sbjct: 234 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQVGQD 293
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ I V S + V + + + V+ L++
Sbjct: 294 TRLATIDVAAASGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 353
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246
+QV ++ + E+ K++G Q + G + ++ A G ++ +
Sbjct: 354 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLVATQYSGASPGIVPLAAAAAGT 412
Query: 247 VKGVLDRFS-------------------------------FETVLHALERATAIRTLAEP 275
G D S F ++ A++ T L+ P
Sbjct: 413 RSGNADDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 472
Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
++ + + A G + T + ++ D GV L P + + G I L
Sbjct: 473 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 532
Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
I+ EVS V+A + R+ +T V + +G + L GLL + +Q E +PLL
Sbjct: 533 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 592
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+P LGALFR+ NR++T + + P +++ A
Sbjct: 593 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQ 629
>gi|124268293|ref|YP_001022297.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1]
gi|124261068|gb|ABM96062.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1]
Length = 721
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 51/281 (18%), Positives = 97/281 (34%), Gaps = 41/281 (14%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG------------FQHSITGSSSGPSKSF 230
+++ ++I QV ++ I E + +G I G+ G +
Sbjct: 444 QIIARIDIPVR-QVLIEARIVEATDTFGRSLGAKLGATVAPSSKVNAGIGGNYLGIGAAT 502
Query: 231 AADFG-------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ + S+ + ALE
Sbjct: 503 GQAPPINSSGLTTGTPSTNSYFVNLPAVGQNGYDAATFAVSIFNSAMNRFLNLEISALEA 562
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+ ++ P + A G + Y+ ++S+GAT++ + L P +
Sbjct: 563 DGKGKIVSSPRVVTADQVKALIEQGTEIPYQ-TATSSGATAIQFRKATLKLEVIPQITPE 621
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
G I L +V++ G + T V + +GGT+V+ G+ + Q +
Sbjct: 622 GNIILD--VDVNKDSPGATTAAGILINTKHVKTQVLVDNGGTVVIGGIYEQTEQIDNTKV 679
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
PLL +P+LGALFR+ +TE+ + TP +V
Sbjct: 680 PLLGDVPVLGALFRSQTRTSNKTELLVFLTPKVVTDRTAAA 720
>gi|58580784|ref|YP_199800.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|58425378|gb|AAW74415.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 673
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 47/281 (16%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223
DQV ++ I + +G + I G++
Sbjct: 391 RPVDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNTSAKRASEIA 450
Query: 224 ------------SGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIR 270
+ GG F + G + + F+ + L A+++
Sbjct: 451 NGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELSAMQQEGRGE 510
Query: 271 TLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
++ P + + + G + + + + +V + + L TPT+ +
Sbjct: 511 VVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELKVTPTITNDN 570
Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
R+ L + + E ++ G +P R+ +T V + G T+V+ G+ + ++
Sbjct: 571 RVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVYEFTDRESVS 630
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
+P L IP LG LF+ ++E+ E+ + TP +++ +
Sbjct: 631 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 671
>gi|241762850|ref|ZP_04760913.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN]
gi|241368025|gb|EER62230.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN]
Length = 712
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 43/266 (16%), Positives = 88/266 (33%), Gaps = 41/266 (15%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------------------- 225
QV ++ I E R + +G + T +
Sbjct: 443 AVRQVLIEARIVEARDSFGRSLGVRLGGTDLRANRGGDGGYGIGGDNRVAFGTSYNNAVA 502
Query: 226 ------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
+ A S+ L A+E R ++
Sbjct: 503 SSGAGGTTTTTGNFVNLPASLSNVNSVGSFALSIFNSAANRFLTLELSAMEADGKGRIVS 562
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
P + A G ++ Y + GAT++ + L TP + G I L
Sbjct: 563 SPRIITADQTKALIEQGTEYPYSITAP-NGATTLAFKKAVLKLEVTPQITPEGNIILD-- 619
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
++++ G + + T + + +GGT+V+ G+ + + + IP+L +P+
Sbjct: 620 LDINKDSRGETTTQGVAIDTKHIKTQILIENGGTVVIGGIFEMEDTNQENKIPVLGDVPV 679
Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
+G LF++ + E+ + TP ++
Sbjct: 680 VGNLFKSRTKESTKREMLVFITPKVI 705
>gi|197117672|ref|YP_002138099.1| type II secretion system secretin lipoprotein PulQ [Geobacter
bemidjiensis Bem]
gi|197087032|gb|ACH38303.1| type II secretion system secretin lipoprotein PulQ [Geobacter
bemidjiensis Bem]
Length = 868
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 75/420 (17%), Positives = 150/420 (35%), Gaps = 72/420 (17%)
Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
D + + T+ ++ K + + + L L + D +R + I
Sbjct: 241 LDKKILNESTIIIYPKTPDK-----VKQYEELFLQTFYLNKLDAKKAVNLVRTMLQVKKI 295
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
V ++ +V+ I+ +++ +E AN +V
Sbjct: 296 YVNEEANALVIRDTPEVIEVARKILE--------------ANDVPD-----------AEV 330
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV----------------S 240
L+V + E+ + + G S +S G + + S
Sbjct: 331 LLEVEVFELSKQNAETFGLLLSRYATSLGVTAPGSTGTNPFLADTLGAVTTTTTTGTTTS 390
Query: 241 EGGDFSVKGVLDRFSFE-------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
G ++ V + + + + + TL+ P + + + A F G +
Sbjct: 391 SAGPSNLLNVFNLRGYNGYLTVPNATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRV 450
Query: 294 LYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNA 345
T SS + +V D GV ++ PT+ + +++ EVS + A
Sbjct: 451 PITTTSSPSGGGVSVNVQYVDVGVKVNAEPTIQLNNEVAIKLGLEVSSILNEKTIGTDQA 510
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+ + R DT + L G T ++ GL++ K + LL IPILG LF N+ +
Sbjct: 511 TTVVTIGTRNLDTVLSLKDGETSIIGGLIQKTQTDSKSKVFLLGDIPILGPLFSNTSDKK 570
Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
++TE+ +A TP +V+ V ++D AF+ R ++ + S ++
Sbjct: 571 DKTELLLAITPRIVRGV-----------TVPDNDVAAFWSGREDEPSSHQPYSSFMEPDF 619
>gi|330820184|ref|YP_004349046.1| type II and III secretion system protein [Burkholderia gladioli
BSR3]
gi|327372179|gb|AEA63534.1| type II and III secretion system protein [Burkholderia gladioli
BSR3]
Length = 697
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 83/446 (18%), Positives = 157/446 (35%), Gaps = 46/446 (10%)
Query: 2 RYLQRTFF--TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII 59
R L+ T S + P + I I + ++ + +
Sbjct: 151 RRLRDALLRDTKASRAARPQLADALRKPVSLNFRSQPIGRIFEAISRVSGVNFVFDSEVQ 210
Query: 60 LQVPVD-VQDVLVSDPTK--------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
+P ++ + V T+ ++ +A + +
Sbjct: 211 ADMPASLFARRTTAENAIELLLRTSQLEKRVLDRHTLLVYPARPEKA-----RDYREFAI 265
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
L + + LR+ + +I V+ + +VL TIQ +
Sbjct: 266 RTFFLSHAEAKSVMAALRQMVKPKDIYVDERVNAIVLRDTPETIQVA------------- 312
Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
++V+ L+I + VTL V + EV + +G Q+ S
Sbjct: 313 -----------ERVVIGLDIPQSE-VTLDVQVLEVNVNDSVDLGLQYPGKIQFSALGAGE 360
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ + + + + L++ RTLA P + + + A+ G
Sbjct: 361 EVGLTLGDLLRLNRDRIGVASESGALSMAIDMLQKQGKTRTLANPKIRVRNLEKANIRIG 420
Query: 291 GQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNA 345
+ T ++ G SV+ D G++L P V + +++ EVS +
Sbjct: 421 ERVPIVTTTNGNGVVTESVSYQDVGLMLKVQPRVSLDDEVSVKVSLEVSNILSEQRTRSG 480
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
S R ADT + +G T VLAGL+K + + G+P LS +P+LG LF + R
Sbjct: 481 LVAYSLGTRNADTLMTARNGQTQVLAGLIKRSEIESRAGLPWLSSLPVLGRLFGSERTRN 540
Query: 406 EETEIFIAATPFLVKPVAMRDLSRPD 431
EETEI + TP + + + + + +
Sbjct: 541 EETEIVLLITPHIERRLDLPEAAVTT 566
>gi|162146314|ref|YP_001600773.1| general secretion pathway protein D [Gluconacetobacter
diazotrophicus PAl 5]
gi|209543683|ref|YP_002275912.1| general secretion pathway protein D [Gluconacetobacter
diazotrophicus PAl 5]
gi|161784889|emb|CAP54432.1| putative general secretion pathway protein D [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531360|gb|ACI51297.1| general secretion pathway protein D [Gluconacetobacter
diazotrophicus PAl 5]
Length = 772
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 70/323 (21%), Positives = 114/323 (35%), Gaps = 17/323 (5%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDI 209
+ + +A+ + + + S V +L QV + IAEV+ +
Sbjct: 438 ASAEGRPQAMRIISNSQHNAILVYGTDQESDTVEQMLRRIDVMPLQVRIDAVIAEVQLND 497
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------VKGVLDRFSFETVLHAL 263
Q G Q S + FS + G + AL
Sbjct: 498 ALQYGTQFFFKSGGINGVLSTNSQTITTGTLATAAFSHTLPGFIIGGASGGGAPFAIDAL 557
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-----ATSVTTHDYGVVLHF 318
+ T + L+ P L ++A G + S S+ T GV++
Sbjct: 558 QNVTTVHVLSSPQLMVQDNRAARLQVGQLVPVQIGSQSSTIGTSIYNQFTYQPTGVIMQV 617
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLL 374
TP V G + L + EVS + P++ R + V + G T+ LAGL+
Sbjct: 618 TPHVSEGGLVTLDVSQEVSSVSPTAASTANAASNPTFNDRSVSSRVVVQDGQTVGLAGLI 677
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
D ++ GIP L IP+LG L N NR+ TE+ I TP ++ D
Sbjct: 678 TDSSSRINSGIPWLKNIPVLGVLAGNQNNNRQRTELLILMTPHVIHDQRDAVDLMEDLRD 737
Query: 435 SVEDDAKAFFFNRVNKIYGPKEA 457
+ + A RV ++ G +
Sbjct: 738 THPNAANVPDELRVMRMTGSADP 760
>gi|59712900|ref|YP_205676.1| pili ecretion protein PilQ [Vibrio fischeri ES114]
gi|59481001|gb|AAW86788.1| pili ecretion protein PilQ [Vibrio fischeri ES114]
Length = 582
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 84/454 (18%), Positives = 157/454 (34%), Gaps = 57/454 (12%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
PS+ + + IS K K ISI + + V + D + AD
Sbjct: 130 GPSLQVVVSQLPESEKKSPISSNNEDKSKPISINFQDIPVRHVLQLIADYNDFNLVVAD- 188
Query: 80 VVHSPRTMYLFG------------------KNVGQANVILIGHDGKQMLNLDILIERDIA 121
V T+ L G + G +I + + + +
Sbjct: 189 SVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVEGNVVLIAPKTELDAQEQQVLEQAQMAS 248
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
L ++ + +++ +V G + + T +
Sbjct: 249 ELAALSSEILSIKYAKASDIAELLVGEGEITMLSSRGSITVDERTNSLLLRDLPENITVI 308
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
K +++ L+I + QV ++ I V L ++G + IT ++ + + + V
Sbjct: 309 KDIIDTLDIPIK-QVQIEARIVTVNEGNLDELGVRWGITNTNGSTTVGGSIESNLAAVGL 367
Query: 241 --EGGDFSVKGVLDRFSFETVLHA-------------------------------LERAT 267
GG K + + L+ L+ +
Sbjct: 368 YDGGGSDDKKSGNNSLPVDDFLNVNLGLANPAASSIAFQVAKLGSDLLLDLELSALQAES 427
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
++ P L + + A G + Y SS+GATSV+ + L TP + R
Sbjct: 428 KAEIISSPRLITTNKKPAYIEQGTEIPYLEA-SSSGATSVSFKKAVLSLMVTPQITPDNR 486
Query: 328 IGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+ L + P V+ G+ + ++ T V + +G T+VL G+ + + E +
Sbjct: 487 LVLDLTVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVDNGETVVLGGIYQHSLSNSVEKV 546
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P+L +P+LGALFR S N + E+ I TP +V
Sbjct: 547 PVLGDLPLLGALFRRSSENIGKKELLIFVTPKVV 580
>gi|46398274|gb|AAS91828.1| AscC [Aeromonas hydrophila]
Length = 618
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 53/315 (16%), Positives = 102/315 (32%), Gaps = 20/315 (6%)
Query: 116 IERDIAHLEMTLRRFIADSNIR-VEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQS 171
+ + L L R ++D+ ++ V V G D + +
Sbjct: 212 TDVEAPGLATILARLLSDAGVQMVNGEGNKKGAAVTSGQAIVQADPSLNAVIVRDTPERM 271
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
++ K + +A I ++ + L Q+G + + +
Sbjct: 272 AMYGKLIAALDKPAARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVII 323
Query: 232 ADFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G S+ ++ LE + ++ PTL A
Sbjct: 324 KTTGDRKGIEGAAALGSLVDSKGLDYLLARVNLLENEGNAQVISRPTLLTQENTQAVIDH 383
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT---VLSPGRIGLRIQTEV-SEPVIGVNA 345
+ K S + YG +L TP + I L + E S+ G A
Sbjct: 384 SETYYVKI--SGERVAELQGITYGTMLRMTPRVVQMWDKPEISLSLHIEDGSQKPNGTGA 441
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P+ + DT + G ++++ G+ +D++ + +P L IP LGALFR+
Sbjct: 442 DGLPTIQRTVVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRSKDTQT 501
Query: 406 EETEIFIAATPFLVK 420
+ P L+
Sbjct: 502 RRSVRLFIIEPRLID 516
>gi|39995438|ref|NP_951389.1| general secretion pathway protein D [Geobacter sulfurreducens PCA]
gi|39982201|gb|AAR33662.1| general secretion pathway protein D, putative [Geobacter
sulfurreducens PCA]
Length = 632
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/249 (24%), Positives = 96/249 (38%), Gaps = 12/249 (4%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSE 241
+V+ L+ QV ++ IAEV D LK +G Q + G + A F+S
Sbjct: 349 QVIQKLDKR-RRQVFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLDPFNFLSA 407
Query: 242 GGDFSVKG------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ S + AL AI L+ P + + A G +
Sbjct: 408 TSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPF 467
Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
+ S+ D G+ L TP + + L I E+S +
Sbjct: 468 LSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVT 527
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R A T V + T+V+ GL++D + IPLL IP+LG LF+ RE+T +
Sbjct: 528 TKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKSTRREKTNLM 587
Query: 412 IAATPFLVK 420
I TP +++
Sbjct: 588 IVLTPRIIR 596
>gi|307634685|gb|ADI83160.2| type II secretion system lipoprotein GspD, putative [Geobacter
sulfurreducens KN400]
Length = 632
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/249 (24%), Positives = 96/249 (38%), Gaps = 12/249 (4%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSE 241
+V+ L+ QV ++ IAEV D LK +G Q + G + A F+S
Sbjct: 349 QVIQKLDKR-RRQVFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLDPFNFLSA 407
Query: 242 GGDFSVKG------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ S + AL AI L+ P + + A G +
Sbjct: 408 TSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPF 467
Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
+ S+ D G+ L TP + + L I E+S +
Sbjct: 468 LSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVT 527
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R A T V + T+V+ GL++D + IPLL IP+LG LF+ RE+T +
Sbjct: 528 TKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKSTRREKTNLM 587
Query: 412 IAATPFLVK 420
I TP +++
Sbjct: 588 IVLTPRIIR 596
>gi|288817748|ref|YP_003432095.1| general secretion pathway protein D [Hydrogenobacter thermophilus
TK-6]
gi|288787147|dbj|BAI68894.1| general secretion pathway protein D [Hydrogenobacter thermophilus
TK-6]
gi|308751347|gb|ADO44830.1| type II and III secretion system protein [Hydrogenobacter
thermophilus TK-6]
Length = 700
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 66/351 (18%), Positives = 137/351 (39%), Gaps = 19/351 (5%)
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
T+ +F + +G ++ +I + + + ++ ++ + E +
Sbjct: 326 NTLGIFEEGIGISSQQ-QAQTEAPRSTQEITKIQALPPTDQKPKQTTPETQ-KKEEMPPA 383
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------KKVMNLLNIAGEDQVTL 198
V+ ++ ++ V++ +S ++ + ++ L++ QV +
Sbjct: 384 VIEEKAKSEAKEEKKIVKVGNIVADKSTNTLIIKATPIEFEVIRSLLRELDV-VPKQVLI 442
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-RFSFE 257
++ IAEV Q G + + G S + FG ++ + +
Sbjct: 443 EMVIAEVSLGKGLQYGVEGLLKGFLDSSSFTIGTSFGLAPQADTLQGFKTIIFNKNNDIR 502
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTS-------GGQHLYKTVSSSTGATSVTTH 310
+L+ L T+++ L+ P + + A Q + T + V
Sbjct: 503 GILNFLASKTSLKVLSAPHILVKDNEEAKIEVGAEVPILTQQIVPVTGGTLNVQNMVQYR 562
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
GV+L PTV + + L+I EVS+ V P R A TT+ L +
Sbjct: 563 TTGVILKVRPTVSADNSVTLKITQEVSDAVKNTVQPELTSPLITKRSASTTLILRNDQVG 622
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+L G++++ +Q+ K G+PLLS IP LG LF N + TE+ + ++
Sbjct: 623 LLGGIIQNRLQRQKSGVPLLSDIPGLGILFSNESVSSSNTELILLIKASVI 673
>gi|330815292|ref|YP_004358997.1| Type II/III secretion system protein [Burkholderia gladioli BSR3]
gi|327367685|gb|AEA59041.1| Type II/III secretion system protein [Burkholderia gladioli BSR3]
Length = 658
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 70/455 (15%), Positives = 150/455 (32%), Gaps = 89/455 (19%)
Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
+ ++IS+ L + + V + +++ L G+ G
Sbjct: 162 PVVVPRAAADRRRISLDLRQAPLAAVFDAFAR-------------FTGQSVVLSGRVQGS 208
Query: 97 ANVI------------LIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
A + L+ +G + D++ A L R +++ R+ +
Sbjct: 209 ATLRIHDVPWRDAFDALLDANGLAMAMRGDVIWVAPAAELTARERARF-EAHARMADLEP 267
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------- 190
++R + + A L+ +Q ++ + + NLL +
Sbjct: 268 LASRTFLLRYPRANDVARLLTGAVANQRVLSRRGSVLADARTNLLFVTDLDGRLAQIAAL 327
Query: 191 -----AGEDQVTLKVTIAEVRRDILKQIGFQH---------------------------- 217
QV ++ + E R +++G +
Sbjct: 328 VAQLDRPSRQVLIEARVVEGERGFSRELGARIALRTTRSLARGEGAGSGGAPGPAQPAAG 387
Query: 218 -------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
+ G G AA G F + ++ + L ALE
Sbjct: 388 EGAPAGSGKPPATGLVGGPEGRLADLAARPIGGFEAATAGLTLFVAGASRLLDLELSALE 447
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ ++ P + A G + Y+ G + V + L P +
Sbjct: 448 SQGRGQIVSRPRVVTADRAPALIEQGTELPYQ-AKVGRGVSGVQFRRATLKLEVEPQITP 506
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
G + L + ++++ +G P+ + T VE+ +GGT+ + G+ + +
Sbjct: 507 DGHVVLDL--DIAKDSVGEQTDAGPAIHTKHVRTRVEVENGGTVSIGGIYERNEWDDVTR 564
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P+L KIP+LGALFR+ + +E+ + TP ++
Sbjct: 565 VPVLGKIPVLGALFRHKARREQSSELVVYITPRVL 599
>gi|300023665|ref|YP_003756276.1| general secretion pathway protein D [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525486|gb|ADJ23955.1| general secretion pathway protein D [Hyphomicrobium denitrificans
ATCC 51888]
Length = 773
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 62/289 (21%), Positives = 117/289 (40%), Gaps = 16/289 (5%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205
G + S V ++ + + + + KK++ +L+ QV + T+AEV
Sbjct: 440 EGPQSSAATSSDQVRVTPDERNNKLLIKASERNYKKILQILHRVDQPPLQVLINATLAEV 499
Query: 206 RRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
+ Q G Q + F+ ++ +L AL
Sbjct: 500 TLNKNLQYGVQFFLQKNHGKSGGIGFSTSDALAIAPVMPGLNLIAGNIGSDPRVILDALA 559
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSSTGATSVTTHDYGVVLH 317
+ TA+R ++ P++ + Q A G Q S + + GV+L+
Sbjct: 560 KETAVRIVSSPSVVVLHNQQAILEVGDQVPIITREAQSVINPDSPTVNEIEFKNTGVILN 619
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAG 372
TP + S G + + +Q EVS D P+ R+ +T+ + SG +VL G
Sbjct: 620 VTPRINSNGLVTMEVQQEVSAVQNTSGQSDAATSLTPTISQRRVTSTIAVQSGQMVVLGG 679
Query: 373 LLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVK 420
L+++++ + K IP+++KIP LG L + R TE+ + P +++
Sbjct: 680 LIREEVSRSKSSIPVINKIPYLGDVLGGETDNGRTRTELVVFIRPIVIR 728
>gi|108757430|ref|YP_630733.1| general secretion pathway protein D [Myxococcus xanthus DK 1622]
gi|108461310|gb|ABF86495.1| general secretion pathway protein D [Myxococcus xanthus DK 1622]
Length = 863
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 114/359 (31%), Gaps = 63/359 (17%)
Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-TIQDSQRAVELSETFLSQSGR 173
+ + + + G V+ + ++ + +
Sbjct: 361 QGTGNAPRGRTPVPARPPGAPGGPTTTQAAELFSGEVKISADKGSNSLVIVASSADYKNI 420
Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
+V+ L+ QV ++ I EV D ++G S S +
Sbjct: 421 V--------QVIQQLD-KPRRQVFVEAVIMEVNLDRNARLGMNLHSGFSLSTSNGDQVPG 471
Query: 234 FGGKFVSE-----------------------GGDFSVKGVLDRFSFETVLHALERATAIR 270
G S G L +F VLHA+++++ +
Sbjct: 472 LIGTNTSGQGLPPSLSLTSLASYGGFLAGIQGPVIPALEKLGIPAFGVVLHAMQQSSDVN 531
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------------------------- 303
L+ P + + A T G +++ + T
Sbjct: 532 VLSTPHILTSDNEEAEITVGQNVPFQSGFNPTSLGSLGAGVGGGAGALGGGLLGGLGGLG 591
Query: 304 --ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+T + + L P + I L I + E P+ R A TTV
Sbjct: 592 SLYAPITRQNVELKLTVKPQINESDYIRLVINQQTEEIASTDPVLG-PTTSRRSAKTTVI 650
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
T+V+ G+++D + +PLL IP+LG LFR++ + +T + + TP++++
Sbjct: 651 ARDQETLVIGGIMQDRTLESVSKVPLLGDIPLLGHLFRDTTRRKTKTNLLLFLTPYIIR 709
>gi|121603667|ref|YP_980996.1| general secretion pathway protein D [Polaromonas naphthalenivorans
CJ2]
gi|120592636|gb|ABM36075.1| general secretion pathway protein D [Polaromonas naphthalenivorans
CJ2]
Length = 738
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/276 (22%), Positives = 102/276 (36%), Gaps = 33/276 (11%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGGK----------- 237
A QV ++ IAEV D + G Q G S +FG
Sbjct: 406 ARRAQVYVESLIAEVNMDKAAEFGIQWQGPIGGKGDSLIGLLGTNFGSSGKNIIQSAIGA 465
Query: 238 ------FVSEGGDFSVKGVLDRFSFETVL-HALERATAIRTLAEPTLTAISGQSASFTSG 290
G + V + F L + L+ + A L+ P L + + A G
Sbjct: 466 ASGTPLAPGTGLNLGVAARSNGVYFLGFLANFLQTSGAGNILSTPNLLTLDNEEAKIIIG 525
Query: 291 GQHLYKTVSSST-----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
+ T + ++ D G+ L P + G + + I EVS
Sbjct: 526 QNVPFVTGQFTNTGSGGSNGSVNPFQTIERKDVGLTLRVKPQISENGTVKMAIFQEVSSV 585
Query: 340 VIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G VN+ R ++ V + G IV+ GLL+D+ +E +P L +P+ G LF
Sbjct: 586 QPGSVNSVTGLITNKRSIESHVLVEDGSIIVIGGLLQDEFAGNQEKVPGLGDVPVFGNLF 645
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
++ +R++T + + P +V+ A + D Y
Sbjct: 646 KSESRSRKKTNLMVFLRPVVVRDGAATS-ALSMDRY 680
>gi|170699037|ref|ZP_02890094.1| general secretion pathway protein D [Burkholderia ambifaria
IOP40-10]
gi|170136073|gb|EDT04344.1| general secretion pathway protein D [Burkholderia ambifaria
IOP40-10]
Length = 770
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 54/294 (18%), Positives = 103/294 (35%), Gaps = 35/294 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ I E+ +G Q +
Sbjct: 370 IQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQV 428
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS-------------------------VKGVLDRF 254
+ AA G + + + + +
Sbjct: 429 ASGQFLGGTNLAAAAGNVAGNSIINLTTGGTAATTGIAANLANLNQGLNIGWLHNMFGVQ 488
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATS 306
+L + L+ P L + + A G + ++S +
Sbjct: 489 GLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNT 548
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365
D G+ LH P + G + L++ TE S NA P++ R +T+ +G
Sbjct: 549 YDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNG 608
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 609 EIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 662
>gi|325521649|gb|EGD00419.1| general secretion pathway protein D [Burkholderia sp. TJI49]
Length = 699
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 57/307 (18%), Positives = 102/307 (33%), Gaps = 41/307 (13%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + + V++ L+ QV ++ I E+ Q+G Q +
Sbjct: 368 IQADAATNSLIITASDPVYRNLRAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQV 426
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255
+ + AA G + + + V
Sbjct: 427 ASGALLAGTNLAATAGSVAGNSIINLTAGTVNSSTGTLTGVGLPANLSNLNQGLNIGWLH 486
Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SS 300
+L + L+ P L + + A G T ++
Sbjct: 487 NMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTT 546
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTT 359
S + D G+ LH P + G + L++ TE S NA PS+ R +T
Sbjct: 547 SNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVDTATTNAQTGPSFTKRSIQST 606
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G IVL GL++D +PLL IP +G LFR+ R++T + + P ++
Sbjct: 607 ILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII 666
Query: 420 KPVAMRD 426
Sbjct: 667 SDRDTAQ 673
>gi|312882785|ref|ZP_07742519.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369569|gb|EFP97087.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 409
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 94/239 (39%), Gaps = 11/239 (4%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------FGGKFVSEG 242
QV ++ I ++ L+ +G + I + PS +
Sbjct: 172 RPIKQVQIEAYIVTIQEGNLEDLGIRWGIQTQPNQPSMISQVNEAMLDVDLSMVAPSPSN 231
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F + + + L AL++ + ++ P L + + A G + Y +SS
Sbjct: 232 TAFRMARLSQNILLDMELSALQKESKAEVISNPKLLTTNKRPAYIEQGSEIPYLEAASSG 291
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTV 360
A+ + L TP + S + L +Q P +N G + ++ T V
Sbjct: 292 AASI-AFKKAVLSLKVTPKITSKNDLLLDLQVTQDRPGNPINTGSGQAVAIDTQRIGTQV 350
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ G TIVL G+ + + + IPLL +P+LGALFR + +E+ I TP ++
Sbjct: 351 LVKDGETIVLGGIFQHSLSNAVDKIPLLGDVPLLGALFRRNYLQENRSELLIFVTPKVL 409
>gi|197335785|ref|YP_002155116.1| general secretion pathway protein D [Vibrio fischeri MJ11]
gi|197317275|gb|ACH66722.1| general secretion pathway protein D [Vibrio fischeri MJ11]
Length = 548
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/285 (21%), Positives = 103/285 (36%), Gaps = 30/285 (10%)
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + + K+ + + + QV L+ + EV Q G S +S
Sbjct: 241 QASVVTITASPDELRKVKQFLGTSHKRLQRQVILEAKLLEVTLSDGYQQGINWSNLTASL 300
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVL---------DRFSFETVLHALERATAIRTLAEP 275
G + G G L +F+ VL ++ + L+ P
Sbjct: 301 GGTDVVFGQTPGLVQGALPGMDTIGTLLGGQTNITVSDGNFQAVLSFMDTQGDLNVLSSP 360
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSP 325
+TA + Q A G Y T SS + ++T G+ L TP +
Sbjct: 361 RVTAANNQKAVIKVGRDEYYVTEVSSVTGSGDNSNASPEVTLTPFFSGISLDVTPQIDDK 420
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSY-----------RVRKADTTVELPSGGTIVLAGLL 374
G + L + V + V D+ +R++D+ + SG +V+ GL+
Sbjct: 421 GNVMLHVHPSVIDVENEVKEIDLGDVGGVLKLPLAKSSIRESDSVIRAKSGDVVVIGGLM 480
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
K +PLL +P LG LFRN ++TE+ I P +V
Sbjct: 481 KSQTVDQVSKVPLLGDVPALGHLFRNVSQLTQKTELVILLKPTVV 525
>gi|212633381|ref|YP_002309906.1| type II and III secretion system protein:secretin [Shewanella
piezotolerans WP3]
gi|212554865|gb|ACJ27319.1| Type II and III secretion system protein:Secretin [Shewanella
piezotolerans WP3]
Length = 558
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 57/249 (22%), Positives = 95/249 (38%), Gaps = 23/249 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
QV L+ + EV Q G +G + +S+ + GV
Sbjct: 286 RQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDITFGTSPTTGLSDQITSVLGGVTSI 345
Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------- 300
F T++ L+ + L+ P +TA + Q A G + T S
Sbjct: 346 QLKGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTP 405
Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------- 352
+T +T G+ L TP + + G + L I V + +
Sbjct: 406 VTTPEVELTPFFSGIALDVTPQIDAEGNVLLHIHPSVIDIKEQTKTIKISDSTLELPLAQ 465
Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R++DT ++ SG +V+ GL+K + +L +PLL IP LG F N + +TE+
Sbjct: 466 SEIRESDTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPYLGEAFTNRANSTVKTEL 525
Query: 411 FIAATPFLV 419
I P +V
Sbjct: 526 VILLKPVVV 534
>gi|59710966|ref|YP_203742.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114]
gi|59479067|gb|AAW84854.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114]
Length = 546
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/285 (21%), Positives = 103/285 (36%), Gaps = 30/285 (10%)
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + + K+ + + + QV L+ + EV Q G S +S
Sbjct: 239 QASVVTITASPDELRKVKQFLGTSHKRLQRQVILEAKLLEVTLSDGYQQGINWSNLTASL 298
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVL---------DRFSFETVLHALERATAIRTLAEP 275
G + G G L +F+ VL ++ + L+ P
Sbjct: 299 GGTDVVFGQTSGLVQGALPGMDTIGTLLGGQTNITVSDGNFQAVLSFMDTQGDLNVLSSP 358
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSP 325
+TA + Q A G Y T SS + ++T G+ L TP +
Sbjct: 359 RVTAANNQKAVIKVGRDEYYVTEVSSVTGSGDNSNASPEVTLTPFFSGISLDVTPQIDDK 418
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSY-----------RVRKADTTVELPSGGTIVLAGLL 374
G + L + V + V D+ +R++D+ + SG +V+ GL+
Sbjct: 419 GNVMLHVHPSVIDVENEVKEIDLGDVGGVLKLPLAKSSIRESDSVIRAKSGDVVVIGGLM 478
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
K +PLL +P LG LFRN ++TE+ I P +V
Sbjct: 479 KSQTVDQVSKVPLLGDVPALGHLFRNVSQLTQKTELVILLKPTVV 523
>gi|223935099|ref|ZP_03627017.1| type II and III secretion system protein [bacterium Ellin514]
gi|223895983|gb|EEF62426.1| type II and III secretion system protein [bacterium Ellin514]
Length = 612
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 65/370 (17%), Positives = 124/370 (33%), Gaps = 54/370 (14%)
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRT 153
G N+ ++ ++ + + L + I+++ + +VL+
Sbjct: 197 GNYNLTIVDDPRTKIARITVKDPAAPEPLVTRV--------IQLKYANVTNIVLNVTGVL 248
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
R T ++ +++ L+ QV ++ + E ++
Sbjct: 249 QDKRSRVAADVRTSQLVVLATDRELTAVDELVAKLD-TATKQVLIEARLVETSKNPTTAK 307
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFV---------------------------------- 239
G + T ++ + F
Sbjct: 308 GVDWTGTAAAQNVRFGNNSILAAPFTRGTPPTPANPFGTPDQQAVPSTILDPTQPMIAAN 367
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ G L+ VL L + L+ P + ++A+ + +
Sbjct: 368 THNGFLPNTFFLNADGASAVLSFLNTDNDAQVLSTPRAVTLDNETATLSVTRAQPIFKTT 427
Query: 300 SST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV------NAGDMP 349
+ T G + VT + G +L TP + + I LR+ EVS +
Sbjct: 428 AGTQGSPGGSEVTYTNVGTILKVTPRISANKMISLRVIPEVSSVAGTDRKIVSGQINEAD 487
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ VR DT V +PSG T+V+ GL+ DD + +PLL IP LGA FR+ + +
Sbjct: 488 IFDVRHIDTQVLIPSGNTLVMGGLVSDDRTKSYIKVPLLGDIPYLGAAFRHESKTQNKKN 547
Query: 410 IFIAATPFLV 419
+ I TP +V
Sbjct: 548 LIIFVTPTIV 557
>gi|221133689|ref|ZP_03559994.1| type IV pilus secretin PilQ [Glaciecola sp. HTCC2999]
Length = 473
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 79/421 (18%), Positives = 146/421 (34%), Gaps = 60/421 (14%)
Query: 51 SIGLNKVIILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
S+ K I L V V+ VL D + + T+ G + L Q
Sbjct: 59 SVYTGKPISLDFKDVPVRQVLQIIAQLNDYNLVTTDTV------TGNVTINLQDVPWDQA 112
Query: 110 LNLDILIERDIAHLEMTL------RRFIADSNIRVEMVSDTVVLHGMVR-----TIQDSQ 158
L + I +E + +A N ++ T L +V ++
Sbjct: 113 LATILNIRGLDQRIEGNIIIIAPHDELLARENALIQSQQQTQDLAPLVSRNHRVNYAKAE 172
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------------------QVTLKV 200
+ ++ ++ N+ A + ++ N + + QV ++
Sbjct: 173 QIAQIIQSTNGGILSNRGAVAVDER-TNTILLRDTQTSIDTAIQMIKELDIPVRQVLIES 231
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--------------------VS 240
+ VR +I QIG + ITG + S +A +
Sbjct: 232 RMITVRDNIDDQIGIRWGITGQKGHLAVSGSAAAANDIKAGIIPDISDRLNVNLPIVNSA 291
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+ ++D + L ALE +A P +T + Q A G + Y +
Sbjct: 292 GRLGVQIASLMDGTILDLELSALETENKGEIIASPRITVANQQEAYIEQGTEIPYVQS-T 350
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADT 358
+ G+TSV + L P + RI L + V+ P+ ++ T
Sbjct: 351 ANGSTSVAFKKAVLSLKVIPQITPDDRIILDLVITQDTRGETVSTATGPAVAIDTQEIKT 410
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V + +G TIVL G+ + +P+L +P++G LF+N ++ E+ I TP +
Sbjct: 411 QVLVENGETIVLGGIFQKISTNDIAKVPILGNVPLVGGLFKNKVSIEQKRELLIFVTPKI 470
Query: 419 V 419
+
Sbjct: 471 I 471
>gi|84622715|ref|YP_450087.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84366655|dbj|BAE67813.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 649
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 47/281 (16%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223
DQV ++ I + +G + I G++
Sbjct: 367 RPVDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNTSAKRASEIA 426
Query: 224 ------------SGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIR 270
+ GG F + G + + F+ + L A+++
Sbjct: 427 NGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELSAMQQEGRGE 486
Query: 271 TLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
++ P + + + G + + + + +V + + L TPT+ +
Sbjct: 487 VVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELKVTPTITNDN 546
Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
R+ L + + E ++ G +P R+ +T V + G T+V+ G+ + ++
Sbjct: 547 RVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVYEFTDRESVS 606
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
+P L IP LG LF+ ++E+ E+ + TP +++ +
Sbjct: 607 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 647
>gi|50086334|ref|YP_047844.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1]
gi|12642803|gb|AAK00351.1|AF329876_7 putative outer membrane protein ComQ [Acinetobacter sp. BD413]
gi|49532310|emb|CAG70022.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1]
Length = 723
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 51/318 (16%), Positives = 112/318 (35%), Gaps = 38/318 (11%)
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
+ + VE + D+V G + + + + + T + + K+++LL+I
Sbjct: 405 NGSATVEPLGDSV---GTLLSPRGTISLDPRTNTLIINDTSQKIDQIR--KMIDLLDIPV 459
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------- 233
+ QV ++ I K++G + I + +
Sbjct: 460 K-QVMIEARIVRATTSFSKEMGVKWGILSQGINQNSNLLVGGSETTLWNLRNPDSNGTYT 518
Query: 234 ----------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G L F + L AL+ ++ P + + Q
Sbjct: 519 IERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDLELSALQADGYGEVISTPKVMSADKQ 578
Query: 284 SASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
A +G + Y++ ++S + + + + L TP + G+I + + ++ +
Sbjct: 579 KAKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIA-NDSIN 637
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+T V + +G T+VL G+ + +P L +P +G LF+ +
Sbjct: 638 SYAQNGEAILNKNTINTNVLVNNGETVVLGGVFEQTTNNAVTKVPFLGDLPYVGRLFKKT 697
Query: 402 RFNREETEIFIAATPFLV 419
+ + E+ I TP +V
Sbjct: 698 AKSEAKNELLIFVTPRIV 715
>gi|78046312|ref|YP_362487.1| type II secretory pathway protein D [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78034742|emb|CAJ22387.1| type II secretory pathway protein D [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 689
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 80/441 (18%), Positives = 155/441 (35%), Gaps = 49/441 (11%)
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
DP VV + + + G +V+ L +Q+L + + E +
Sbjct: 231 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQD 290
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ + V S + V + + + V+ L++
Sbjct: 291 TRSTAMDVAAASGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 350
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246
+QV ++ + E+ K++G Q + G + ++ A G ++ +
Sbjct: 351 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGT 409
Query: 247 VKGVLDRFS-------------------------------FETVLHALERATAIRTLAEP 275
G D S F ++ A++ T L+ P
Sbjct: 410 RSGNADDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 469
Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
++ + + A G + T + ++ D GV L P + + G I L
Sbjct: 470 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 529
Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
I+ EVS V+A + R+ +T V + +G + L GLL + +Q E +PLL
Sbjct: 530 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 589
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVE-----DDAKAF 443
+P LGALFR+ NR++T + + P +++ + ++ P +Y E D +A
Sbjct: 590 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNYLRERQLADGDPEAA 649
Query: 444 FFNRVNKIYGPKEASEVEGQN 464
V + G +
Sbjct: 650 LDALVRDYLRAQPPQLPAGPS 670
>gi|188578246|ref|YP_001915175.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188522698|gb|ACD60643.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 655
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 47/281 (16%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223
DQV ++ I + +G + I G++
Sbjct: 373 RPVDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNTSAKRASEIA 432
Query: 224 ------------SGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIR 270
+ GG F + G + + F+ + L A+++
Sbjct: 433 NGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELSAMQQEGRGE 492
Query: 271 TLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
++ P + + + G + + + + +V + + L TPT+ +
Sbjct: 493 VVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELKVTPTITNDN 552
Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
R+ L + + E ++ G +P R+ +T V + G T+V+ G+ + ++
Sbjct: 553 RVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVYEFTDRESVS 612
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
+P L IP LG LF+ ++E+ E+ + TP +++ +
Sbjct: 613 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 653
>gi|149923951|ref|ZP_01912337.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1]
gi|149815183|gb|EDM74732.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1]
Length = 1125
Score = 160 bits (404), Expect = 6e-37, Method: Composition-based stats.
Identities = 50/279 (17%), Positives = 95/279 (34%), Gaps = 43/279 (15%)
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------ 234
++ ++ L+ QV ++ I E R + L+Q+G Q +S + +
Sbjct: 842 AESLVRQLDSQTP-QVLIEARIVEARTNWLRQLGIQWGFDFVASPGTGNPTGLLFPNAIG 900
Query: 235 ---------------------------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261
G FS + + L
Sbjct: 901 IGGGSGSNQSPVNGLILPGAAANPNYAVDLPAVVGTGSGGALGFSFGSLSGNLNTNLRLS 960
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
A E +R ++ P + + A G Q VS+ T + + L TP
Sbjct: 961 AAENEGDVRIISAPKIVTLDNTEAQIEQGVQIPIAQVSAQGVNTR--YVNATLGLRVTPQ 1018
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
V + G + L ++ + +E P+ + A + + + G T V+ G+ +
Sbjct: 1019 VTNEGAVLLEVEVQKNEADFVNTGARGDPTILTKSARSQLLITDGDTAVIGGIYTRNQAI 1078
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P + IPI+G F+N + +E+ I TP +V
Sbjct: 1079 NHSKVPWFADIPIIGWFFKNRTERDDRSEMLIFLTPRIV 1117
>gi|188026465|ref|ZP_02962178.2| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827]
gi|188019786|gb|EDU57826.1| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827]
Length = 348
Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats.
Identities = 52/240 (21%), Positives = 109/240 (45%), Gaps = 9/240 (3%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
++ + L++ + QV + I R L+++G + + S S+ + ++ S
Sbjct: 114 EEWLKQLDVP-KQQVQITAHIISSSRTALQELGLEWGMLSGSPNNSRYQRYN---RYDSS 169
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G F++ + + + +ALE+ + +A P L A AS G + V+S+
Sbjct: 170 SGQFNLLRLGEGLLELKL-NALEKENLLSIIASPRLMASHKHPASIQQGSEIP--YVTST 226
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTT 359
T V D + + TPT+ + L ++ + P + D + ++ T+
Sbjct: 227 EKKTHVQFKDAVLGMEVTPTLSRGDHVELLLKISHNSPDKAITTSDEHYLAINKQEIATS 286
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V + + T++L G+ + ++ + G+P LS IP+LG LF N+ + + + + TP L+
Sbjct: 287 VTIRNNETLILGGIFQQKQEKTETGLPFLSNIPLLGKLFTNTGEHIDRRVLVVFITPKLI 346
>gi|83859119|ref|ZP_00952640.1| general secretion pathway protein D [Oceanicaulis alexandrii
HTCC2633]
gi|83852566|gb|EAP90419.1| general secretion pathway protein D [Oceanicaulis alexandrii
HTCC2633]
Length = 661
Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats.
Identities = 62/289 (21%), Positives = 110/289 (38%), Gaps = 48/289 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---- 237
++V++ L++ QV ++ + E+ + +G Q + G + +G
Sbjct: 321 EQVISRLDVRRP-QVQVEAIVVEISDQTARDLGVQFLLAGDGDDATPFAYTRYGSTRQPD 379
Query: 238 -----------FVSEGGDFSVKGV--------------------------LDRFSFETVL 260
+S G + D F ++
Sbjct: 380 LLALTGALLTGGLSSGDGETTSSTDVNLRNLALSSLVNSRGGSFGFGGELNDGSLFGVIV 439
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVV 315
+AL+ T L++P L + + A+ G + T ++S + GV
Sbjct: 440 NALDSDTDSNVLSKPQLMVLDNEEANLMVGQEIPITTGETLGSNNSNPFRQIERESVGVQ 499
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLL 374
L+ P + I L+I+ EVS V+A + RK +TTV G IVL GL+
Sbjct: 500 LYVRPQINDGDAIRLQIRQEVSSVAGPVSADFVELITNQRKIETTVLADDGEIIVLGGLI 559
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
+ D Q+ + G+P LS+IP G LFRN + + + P +V+ A
Sbjct: 560 ETDEQEAESGVPGLSRIPGAGRLFRNDSRSTTRRNLMVFIRPTIVRDAA 608
>gi|190572747|ref|YP_001970592.1| putative general secretion pathway protein D [Stenotrophomonas
maltophilia K279a]
gi|190010669|emb|CAQ44278.1| putative general secretion pathway protein D precursor
[Stenotrophomonas maltophilia K279a]
Length = 733
Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats.
Identities = 67/276 (24%), Positives = 111/276 (40%), Gaps = 25/276 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----------A 231
+V+ L++ QV ++ +AEV D + G + +G + +
Sbjct: 446 EVIEKLDV-MPLQVHIEAQVAEVSLDGDLKYGVNWFFDNAVAGRALTGALGGVTLPAAAG 504
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
+ + G + + V+ AL++ T +R L P++ + A+ G
Sbjct: 505 GSWSSFAGAATGGEGLGWAFTGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGD 564
Query: 292 QHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----- 341
+ T + +TG +SV D GV+L P V G + L I EVS
Sbjct: 565 KVPINTTTVNTGIGTGTYSSVQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASNVPDNC 624
Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
P +K T + SG TI+LAGL+ D GIP LS+IP++GALF
Sbjct: 625 NPTERNCNPRISTKKLSTEAAVQSGDTIMLAGLITDSATDGSSGIPGLSRIPVVGALFGQ 684
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
+E+ + TP +V+ ++ D YS
Sbjct: 685 KSRTSRRSEVIVLLTPSIVR--NGQEARNLTDEYSQ 718
>gi|220936186|ref|YP_002515085.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7]
gi|219997496|gb|ACL74098.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7]
Length = 711
Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats.
Identities = 53/264 (20%), Positives = 103/264 (39%), Gaps = 26/264 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240
++++ L+I QV ++ I D + +G + +TG +
Sbjct: 448 RLIDRLDIP-VQQVLIETRIVIASDDFARDLGARFGVTGVGQTGRTQTFTTGNLSGTTEM 506
Query: 241 ---------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
G ++ + + + AL+ ++ P +
Sbjct: 507 IRGDELSLLNRLNTNLPVISPSAGSIALSILRPDVLLDLEISALQVEGRGEIISSPRVIT 566
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
+GQ+A G + Y+ +SS GAT+V + + TP + G I L I+ P
Sbjct: 567 ANGQTARIQQGERIPYQEATSS-GATAVQFIEAVLATEVTPQITPNGNIILNIRVNKDNP 625
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ PS R+ +T V + +G T+VL G+ + D + E +P +P + LFR
Sbjct: 626 -GTLVVQGTPSIETREVETQVFVRNGETVVLGGVYEIDSLETLEKVPFFGDLPGIRHLFR 684
Query: 400 NSRFNREETEIFIAATPFLVKPVA 423
+ + + E+ I TP +++ A
Sbjct: 685 RTGKSTRKAELLIFVTPKVIEETA 708
>gi|319944026|ref|ZP_08018306.1| type II and III secretion system protein [Lautropia mirabilis ATCC
51599]
gi|319742787|gb|EFV95194.1| type II and III secretion system protein [Lautropia mirabilis ATCC
51599]
Length = 837
Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats.
Identities = 57/271 (21%), Positives = 95/271 (35%), Gaps = 30/271 (11%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
V++ L+ QV ++ I EV+ D + ++G Q S G + S
Sbjct: 408 GVIDQLDSR-RAQVYIESLIVEVKADTVSEMGIQWQFGTSRPGQNSVVGGTNFSSGGSNI 466
Query: 243 G---------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ + + ALE T A P L +
Sbjct: 467 LSVTQNPAALAAAGGLNVGVVRNGVSLFGQTFLNLGLLARALEAETNSNIRATPNLLTLD 526
Query: 282 GQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+ A G + T +T ++ D G +L P V G + + I
Sbjct: 527 NEEARIIIGQNVPFVTGQYATTNNTLSSPFQTIERKDVGTMLRVRPQVSEGGTVKMEIAQ 586
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
E+S V + + R D+ V + G +VL GL++D ++ +PLL IP L
Sbjct: 587 EISAVVDTTQSAGI-ITNRRAIDSNVLVDDGQIVVLGGLIEDTVEGGISKVPLLGDIPGL 645
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR 425
G LFR R +T + I P +++
Sbjct: 646 GRLFRYDNRKRVKTNLLIFLRPVVLRSADQA 676
>gi|307720197|ref|YP_003891337.1| type II and III secretion system protein [Sulfurimonas autotrophica
DSM 16294]
gi|306978290|gb|ADN08325.1| type II and III secretion system protein [Sulfurimonas autotrophica
DSM 16294]
Length = 709
Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats.
Identities = 54/239 (22%), Positives = 109/239 (45%), Gaps = 18/239 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
Q ++VT+A+V +GF+++IT ++G K+ GG + V
Sbjct: 454 PLQTLVEVTVADVDMTDTFSLGFEYAITNQNAGLVKNILNITGG-------GSGLGVVFK 506
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------T 302
E+ ++A + +++P L ++ ++ + G Q T S +
Sbjct: 507 GNHLESTINAYAEKKLLDIISKPKLLILNNKTGNINVGTQVPIITSQVSAADLGSSSQPS 566
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVE 361
+++ + G++L+ TPT+ S G + + I +S+ + + P R TT
Sbjct: 567 INQNISYKNTGIILNITPTINSNGVLTMNISITLSDAQLNDTSTINSPLIINRSLQTTAV 626
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ SG +I+L GL+ + + K G+PLL IP +G +F ++ ++E+ I P ++K
Sbjct: 627 VQSGDSILLGGLISQNKSKSKGGVPLLKDIPWIGNMFASNSIKTTKSELIILIRPVIIK 685
>gi|212709415|ref|ZP_03317543.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM
30120]
gi|212687930|gb|EEB47458.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM
30120]
Length = 344
Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats.
Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 6/228 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV + I R L+ +G + + S + + + G L
Sbjct: 119 QQVQITAHIISSSRTALQALGLEWGVHNDS--ATDGHHSRYNRYSSQSGQMALNVLRLGE 176
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
E L+ALE+ + +A P L A AS G + V++S + V D
Sbjct: 177 GLLEMKLNALEKENLLSIIASPRLVASHKNPASIQQGSEIP--YVTTSEKKSHVQFKDAV 234
Query: 314 VVLHFTPTVLSPGRIGL--RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
+ + TPT+ + + +I + + N + ++ T+V + + T++L
Sbjct: 235 LGMEVTPTISRNDNVEMVLKISHNSPDTALTTNPNQHLAINKQEIATSVTIKNNNTLILG 294
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G+ + ++ G+P LS+IP+LG LF N + ++ + + TP L+
Sbjct: 295 GIFQQKQEKTDSGVPFLSQIPLLGNLFINKTQHVDKRVLVVFITPKLI 342
>gi|254246658|ref|ZP_04939979.1| GspD [Burkholderia cenocepacia PC184]
gi|124871434|gb|EAY63150.1| GspD [Burkholderia cenocepacia PC184]
Length = 775
Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats.
Identities = 55/275 (20%), Positives = 95/275 (34%), Gaps = 39/275 (14%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
V++ L+ QV ++ I E+ +G Q + + G
Sbjct: 399 SVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSIIN 457
Query: 236 ---------------GKFVSEGGDFSVKGVLDRF-------SFETVLHALERATAIRTLA 273
G S G S + +L + L+
Sbjct: 458 LTAGGVANAAGGITGGGLASNLGQLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLS 517
Query: 274 EPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
P L + + A G + ++S + D G+ LH P +
Sbjct: 518 TPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDG 577
Query: 326 GRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
G + L++ TE S NA P++ R +T+ +G IVL GL++D+ Q
Sbjct: 578 GILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSK 637
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+PLL IP +G LFR+ R +T + + P ++
Sbjct: 638 VPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII 672
>gi|94496443|ref|ZP_01303020.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
gi|94424189|gb|EAT09213.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
Length = 726
Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats.
Identities = 58/293 (19%), Positives = 107/293 (36%), Gaps = 57/293 (19%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
+QV ++ I E+ K++G Q I + +G + + ++ ++ G +
Sbjct: 351 TRREQVLVEAIIVEISDAAAKKLGVQFLIGSTKTGFAATNYSNASPNLLTLAGAYGANQL 410
Query: 248 ------------------------------------------------KGVLDRFSFETV 259
+ F +
Sbjct: 411 GTTTTTVVAPDGTRTTTEVRENSDLASTLQQAAINSLQSATGAIAGLGGSIGSNGIFGAI 470
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGV 314
++A++ T L+ P++ + Q AS G Q T + +V D G+
Sbjct: 471 INAVKSDTESNLLSTPSVMTLDNQKASILVGQQVPVTTGEALSQNFDNQFRTVQRQDVGI 530
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
L P + + G I L ++ EVS V N R+ +TTV + G + L GL
Sbjct: 531 KLEVKPQINTGGAIKLFLRQEVSSVAGPVSNDNSDLIINKREIETTVTVDDGEILALGGL 590
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
L D+ ++ E IPLLS IP +G LF++ +R +T + + P +++
Sbjct: 591 LDDNERKTIERIPLLSDIPGIGELFKSRSRSRTKTNLMVFIRPTILRSKEDAQ 643
>gi|289668624|ref|ZP_06489699.1| general secretion pathway protein D [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 760
Score = 159 bits (403), Expect = 8e-37, Method: Composition-based stats.
Identities = 72/304 (23%), Positives = 117/304 (38%), Gaps = 32/304 (10%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ET A SS + V+ L++ QV ++ IAEV G
Sbjct: 443 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQIAEVNLTGELSYGVNWYF 501
Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268
+ + P + + + G V + V++AL+R T
Sbjct: 502 ENAVTTPFNADGSGGPALPSAAGRNIWGDIAGSVTGNGVGWTFLGKNAAAVINALDRVTN 561
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322
+R L P++ + A+ G + + S +TG +SV D GV+L P V
Sbjct: 562 VRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRV 621
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370
G + L I EVS P A + R+ T + SG T++L
Sbjct: 622 TKDGMVFLDIVQEVSTPGARPAACTAATTTTVNSAACNVDINTRRVKTEAAVQSGDTMML 681
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGL+ D G+P LSK+P++GALF + E+ + TP +V+ ++
Sbjct: 682 AGLIDDSTSDGSAGVPFLSKLPVVGALFGQKTRDNTRREVIVLITPSIVR--NPQEARNL 739
Query: 431 DDHY 434
D Y
Sbjct: 740 TDEY 743
>gi|238751132|ref|ZP_04612627.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380]
gi|238710610|gb|EEQ02833.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380]
Length = 376
Score = 159 bits (403), Expect = 8e-37, Method: Composition-based stats.
Identities = 68/291 (23%), Positives = 117/291 (40%), Gaps = 10/291 (3%)
Query: 137 RVEMVSDTVVL-HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
E V+D++ L G V + S + + T L + A S V L + Q
Sbjct: 90 DAEQVADSLDLAEGGVLSPLGSVVVDKRTNTLLIRDTPASLALLQSWLVEMDLPL---QQ 146
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLD 252
V L I + R+ L+++G + + + S F + F+V +
Sbjct: 147 VQLAAHIVTISRENLQELGVRWGMGEAKQNSSLRMNDFNVNLPLPNRVISAGFNVARIGG 206
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
R + ALE+ I +A P L A Q+AS G Y G ++V +
Sbjct: 207 RLLELEL-SALEQENQIDIIASPHLVASHQQTASIKQGSDIPYTVSKGKKGISTVEFKEA 265
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVL 370
+ + TP +L G+I L ++ + P + + + ++ T + + G TIVL
Sbjct: 266 VLGMEVTPKILRNGKITLDLKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETIVL 325
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
G+ + Q +P+L+ IP LG LF+ + E+ I TP L+
Sbjct: 326 GGIFQQKSTQGVHKVPVLADIPWLGVLFKQDAQQQSRRELVIFITPKLINA 376
>gi|87309468|ref|ZP_01091603.1| Type IV pilin multimeric outer membrane protein [Blastopirellula
marina DSM 3645]
gi|87287776|gb|EAQ79675.1| Type IV pilin multimeric outer membrane protein [Blastopirellula
marina DSM 3645]
Length = 719
Score = 159 bits (403), Expect = 8e-37, Method: Composition-based stats.
Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 7/245 (2%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
QV ++ TI V+ D +G + + D +K
Sbjct: 337 RRPLQVAIEATILSVKLDDSLNLGVNFEALIDKNKVRLVSGFPLSALDQIKLTDGGLKFG 396
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVT 308
S + ALE +A P L ++ Q A G Q ++ TV+ + SV
Sbjct: 397 FLDSSLGVFIDALESFGDTSVIASPQLLVLNKQRAEILIGEQKGYISTTVTETASTQSVE 456
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGT 367
+ G L P + G + L + E+S+ + V +P+ V + T V P G T
Sbjct: 457 FLEIGTQLRLRPFITDDGMVRLEVHPEISDGDVKVEGQFTLPNKIVTQVTTNVICPDGRT 516
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----PVA 423
I++ GL+K D+++ IP L IPILG FR + E+ + TP +V P
Sbjct: 517 IIIGGLIKSDLRKKGSQIPYLGSIPILGPAFRQKQETTVRDELIVLLTPRIVDAAHIPSD 576
Query: 424 MRDLS 428
+L
Sbjct: 577 GEELR 581
>gi|269964603|ref|ZP_06178842.1| General secretion pathway protein D [Vibrio alginolyticus 40B]
gi|269830730|gb|EEZ84950.1| General secretion pathway protein D [Vibrio alginolyticus 40B]
Length = 286
Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats.
Identities = 42/208 (20%), Positives = 90/208 (43%), Gaps = 6/208 (2%)
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
+ G + + + D+ + G + + ++ A+ + L+ P++
Sbjct: 18 NSNGERTPYDVTESGDYSTLASALSGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSI 77
Query: 278 TAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
T + ASF G + T ++ +V + G+ L P + + L I
Sbjct: 78 TVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNI 137
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP
Sbjct: 138 EQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIP 196
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
+LG LF+++ E+ + + P +++
Sbjct: 197 VLGHLFKSTSTQTEKRNLMVFIKPTIIR 224
>gi|261344685|ref|ZP_05972329.1| protein transport protein HofQ [Providencia rustigianii DSM 4541]
gi|282567605|gb|EFB73140.1| protein transport protein HofQ [Providencia rustigianii DSM 4541]
Length = 346
Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats.
Identities = 50/228 (21%), Positives = 97/228 (42%), Gaps = 6/228 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV + I R L+ +G + + G + + + G L
Sbjct: 121 QQVQITAHIVSSTRTALQALGLEWGMLGEM--ATNPHHSRYNRYNTEPGKVALNILKLGD 178
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
E L ALE+A + +A P L A + AS G + V+++ + V D
Sbjct: 179 GLLEMKLSALEKANLLSIIASPRLVASHQKPASIQQGTEIP--YVTNTDKKSHVQFKDAV 236
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371
+ + TPT+ ++ + ++ + P + S ++ T+V + + T++L
Sbjct: 237 LGMEVTPTISRDNKVEMVLKISHNSPDTAITTSQNHHLSINKQEIATSVTIKNNDTLILG 296
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G+ + ++ + GIP LS++P+LG LF NS + + + + TP L+
Sbjct: 297 GIFQQKQEKTEAGIPFLSQLPLLGNLFTNSFQHIDRRVLIVFITPKLI 344
>gi|71066434|ref|YP_265161.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4]
gi|71039419|gb|AAZ19727.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4]
Length = 756
Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats.
Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 8/240 (3%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFV 239
K++ ++I QV ++ I K++G + I S +
Sbjct: 514 KLIGKIDIPVR-QVMIEARIVSASDSFSKELGVRWGILFDGKPDDNRLTSSGLNVDLGIS 572
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ + + L A++ ++ P + Q+A +SG Q Y+
Sbjct: 573 NPASVAFGILKVSDVMLDLELLAMQADNRGEVISTPKILTSDKQTAKISSGTQIPYQEA- 631
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
S++GAT+ + + + L TP + G+IGL++ P I N + T
Sbjct: 632 SASGATTTSFKEAALSLEATPNITPDGKIGLQLLITNGTPTIINNQV---AIAEDSISTN 688
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V + G TIVL G+ K+ + +P L +P +G FR + + E+ I TP L+
Sbjct: 689 VIVEDGQTIVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLI 748
>gi|254517138|ref|ZP_05129196.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
gi|219674643|gb|EED31011.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
Length = 770
Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats.
Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 6/275 (2%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G R V E + K+ + L++ QV ++ +I EV+
Sbjct: 459 SGTGTNELVDVRVVADEENNALMVYADGKQYGIVKEALKQLDVVAT-QVIIEASIMEVQL 517
Query: 208 DILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ G + + S G + FS VL+AL
Sbjct: 518 IDELRYGLEWTFKNGLGSNYDGLGTLAAGAAGPAAVAGFSYTVSNSVGDISAVLNALSEE 577
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTV 322
+ I ++ P++ + A + G Q + ++T D GV L P+V
Sbjct: 578 SLINVISTPSVMVLDNHVAFISVGDQVPVLQGQTITNGGNSVQNITYRDTGVQLSVRPSV 637
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ G + + I+ V + +A ++ R ++ V + S ++VL GL++++
Sbjct: 638 NAGGLVTMDIEQSVIDVGAIDSATGQRAFLDRTINSRVAVRSSESVVLGGLIRENSSLGD 697
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
G+P+L +IP+ G+LF + + TE+ + TP
Sbjct: 698 SGVPILREIPLFGSLFGTTTTDSRRTELLVIITPR 732
>gi|294667368|ref|ZP_06732586.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292602809|gb|EFF46242.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 648
Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats.
Identities = 48/276 (17%), Positives = 102/276 (36%), Gaps = 46/276 (16%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------------------------- 222
DQV ++ I + +G + ITG+
Sbjct: 367 RPVDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNTAAQRANEIA 426
Query: 223 SSGPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
++G S + A+ G S + + F+ + L A++
Sbjct: 427 NTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSAMQEEGRGEV 486
Query: 272 LAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
++ P + + + G + + + +V + + L TPT+ + R
Sbjct: 487 VSNPRIVTANQREGVIKQGREIGYVTISGGGTGGQSQANVQFKEVLLELKVTPTITNDNR 546
Query: 328 IGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ L + + E +N G +P R+ +T V + G T+V+ G+ + + ++
Sbjct: 547 VFLNMNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFNDRESVAK 606
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+P L IP LG LF+ ++E+ E+ + TP +++
Sbjct: 607 VPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642
>gi|170731436|ref|YP_001763383.1| general secretion pathway protein D [Burkholderia cenocepacia
MC0-3]
gi|169814678|gb|ACA89261.1| general secretion pathway protein D [Burkholderia cenocepacia
MC0-3]
Length = 780
Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats.
Identities = 55/275 (20%), Positives = 95/275 (34%), Gaps = 39/275 (14%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
V++ L+ QV ++ I E+ +G Q + + G
Sbjct: 399 SVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSIIN 457
Query: 236 ---------------GKFVSEGGDFSVKGVLDRF-------SFETVLHALERATAIRTLA 273
G S G S + +L + L+
Sbjct: 458 LTAGGVANAAGGITGGGLASNLGQLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLS 517
Query: 274 EPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
P L + + A G + ++S + D G+ LH P +
Sbjct: 518 TPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDG 577
Query: 326 GRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
G + L++ TE S NA P++ R +T+ +G IVL GL++D+ Q
Sbjct: 578 GILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSK 637
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+PLL IP +G LFR+ R +T + + P ++
Sbjct: 638 VPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII 672
>gi|94269217|ref|ZP_01291402.1| type II and III secretion system protein:Secretin/TonB, short-like
[delta proteobacterium MLMS-1]
gi|93451297|gb|EAT02179.1| type II and III secretion system protein:Secretin/TonB, short-like
[delta proteobacterium MLMS-1]
Length = 557
Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats.
Identities = 70/325 (21%), Positives = 126/325 (38%), Gaps = 51/325 (15%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTI 202
++ G R +D +A ++ S + ++V ++ L QV L+ I
Sbjct: 206 MIVGTDRGREDGSQARQVIVNSKSGLVMVRALPGELREVETFLDALLENALRQVMLEAKI 265
Query: 203 AEVRRDILKQIGFQHSITGSS-----------------------SGPSKSFAADF----- 234
EV D Q G +S +G + + +AD
Sbjct: 266 IEVELDEAFQSGINWGKLATSGRDTLKLGQIGGGTVLDDGVSAIAGNTGNLSADNYNPID 325
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
G + GG F++ LD SF + L+ + L+ P + + Q A G
Sbjct: 326 GTTTSAFGGVFTLATSLDHSSFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEY 385
Query: 295 YKTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
+ T S + T +T G+ L TPT+ + L I+ VS+
Sbjct: 386 FVTDVSFSTRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQT 445
Query: 344 NAGDMPSYRV---------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
+ + R++D+ V SG I++ GL++D ++ + G+P L +P++
Sbjct: 446 KSFTVAGQTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLV 505
Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
G LFR R+++ +TE+ I P +V
Sbjct: 506 GNLFRQQRWSQRKTELVILLRPVVV 530
>gi|46199319|ref|YP_004986.1| competence protein pilQ [Thermus thermophilus HB27]
gi|17226359|gb|AAL37751.1|AF436067_5 putative secretin PilQ [Thermus thermophilus HB27]
gi|46196944|gb|AAS81359.1| competence protein pilQ [Thermus thermophilus HB27]
Length = 757
Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats.
Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 10/234 (4%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV L+V I EV+ ++ + +G + + + + + F S L
Sbjct: 532 PQVNLRVRIQEVQSNLTRSLGLKWNSIAGGNVAASILDSGLSLIFDS-------TRSLAA 584
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+ L AL++ R L + T ++ Q+A SG + V + D G
Sbjct: 585 LNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVNDQVERV--PFDVG 642
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAG 372
+++ TP + + G+I L I+ EVS V GD+ + + TT+ + G T+VL G
Sbjct: 643 LIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGG 702
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
L + Q ++G+PLL IP++G LF+ + E+ + T ++K A +
Sbjct: 703 LTSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKEAASAN 756
>gi|294627095|ref|ZP_06705683.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292598528|gb|EFF42677.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 649
Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 47/282 (16%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------------------------- 222
DQV ++ I + +G + ITG+
Sbjct: 367 RPVDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNTSAQRANEIA 426
Query: 223 SSGPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
++G S + A+ G S + + F+ + L A++
Sbjct: 427 NTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSAMQEEGRGEV 486
Query: 272 LAEPTLTAISGQSASFTSGGQH-----LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
++ P + + + G + + S +V + + L TPT+ +
Sbjct: 487 VSNPRIVTANQREGVIKQGREIGYVTISGGGAAGSAAQANVQFKEVLLELKVTPTITNDN 546
Query: 327 RIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
R+ L + EV+ +I G +P R+ +T V + G T+V+ G+ + ++
Sbjct: 547 RVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESVS 606
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+P L IP LG LF+ ++E+ E+ + TP +++ +
Sbjct: 607 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASAN 648
>gi|325924171|ref|ZP_08185732.1| General secretion pathway protein D [Xanthomonas gardneri ATCC
19865]
gi|325545346|gb|EGD16639.1| General secretion pathway protein D [Xanthomonas gardneri ATCC
19865]
Length = 758
Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats.
Identities = 74/299 (24%), Positives = 123/299 (41%), Gaps = 31/299 (10%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ET + A SS + V+ L++ QV ++ IAEV + G
Sbjct: 445 VSAVAETNTLLVRASAQAWSSIRDVIEKLDV-MPMQVHIEAQIAEVTLTGQLEYGVNWYF 503
Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268
+ + P + + G + G + + + ++ AL+R T
Sbjct: 504 ENAVNAPINADGSGGAGLAPAVGRGIWGDVSGSVTNNGLAWTFLGKNAAAIISALDRVTN 563
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322
+R L P++ + A+ G + + S +TG +SV D GV+L P V
Sbjct: 564 LRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRV 623
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370
G + L I EVS P A + R+ T + +G TI+L
Sbjct: 624 TKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAACNVDINTRRVKTEAAVQNGDTIML 683
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
AGL+ D +G+P LSK+P++G+LF NR E+ + TP +V+ P RDL+
Sbjct: 684 AGLIDDTTSDGSDGLPFLSKLPVVGSLFGRKTQNRNRREVIVLITPSIVRNPQDARDLT 742
>gi|78049053|ref|YP_365228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78037483|emb|CAJ25228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 649
Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 47/282 (16%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------------------------- 222
DQV ++ I + +G + ITG+
Sbjct: 367 RPVDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNTSAQRANEIA 426
Query: 223 SSGPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
++G S + A+ G S + + F+ + L A++
Sbjct: 427 NTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSAMQEEGRGEV 486
Query: 272 LAEPTLTAISGQSASFTSGGQH-----LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
++ P + + + G + + S +V + + L TPT+ +
Sbjct: 487 VSNPRIVTANQREGVIKQGREIGYVTISGGGAAGSAAQANVQFKEVLLELKVTPTITNDN 546
Query: 327 RIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
R+ L + EV+ +I G +P R+ +T V + G T+V+ G+ + ++
Sbjct: 547 RVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESVS 606
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+P L IP LG LF+ ++E+ E+ + TP +++ +
Sbjct: 607 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASAN 648
>gi|153870600|ref|ZP_01999967.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS]
gi|152072935|gb|EDN70034.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS]
Length = 494
Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 99/241 (41%), Gaps = 22/241 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV ++ TIAEV+ + Q G +++ G +S
Sbjct: 250 RQVLIEATIAEVQLNDQYQAGIDWQRIDGDFNYTQALTGGNLGNAPFYSFGYSNVASRLG 309
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------TG 303
+ + LE+ +++ L+ P + A++ Q+A +Y T T
Sbjct: 310 -NISATVRLLEQFGSVKVLSSPKIMALNNQTAILKVVDNIIYFTTEVEITETDTRTRETF 368
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYR 352
T + T G+V+ TP + + L I+ +S +P +
Sbjct: 369 ETEINTVPVGLVMSVTPQISENNVVMLNIRPTISRIINFKVDPNPALAAAGTVNQIPEIQ 428
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
VR+ +T +++ G V+ GL++D Q+K+G+P+LS++P++G F E+TE+ I
Sbjct: 429 VREIETILKINHGDIGVIGGLMQDTTNQIKKGVPVLSQLPLVGDFFSYRDDQYEKTELVI 488
Query: 413 A 413
Sbjct: 489 F 489
>gi|294666157|ref|ZP_06731413.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292604073|gb|EFF47468.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 763
Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats.
Identities = 72/308 (23%), Positives = 121/308 (39%), Gaps = 34/308 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ET A SS + V+ L++ QV ++ +AEV G
Sbjct: 448 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGALSYGVNWYF 506
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERA 266
+ + S S FGG + ++ G + + ++ AL+
Sbjct: 507 ENAVNAASDSTTYGFGGAGLPSAAGRNIWGDIAGRVTDGGVAWTFLGKNAAAIISALDTV 566
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTP 320
+ +R L P++ + A+ G + + S +TG +SV D GV+L P
Sbjct: 567 SNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSYSSVQYIDTGVILKVRP 626
Query: 321 TVLSPGRIGLRIQTEVSEPVIG------------VNAGDMPSYRVRKADTTVELPSGGTI 368
V G + L I E+S P +A R+ T + SG T+
Sbjct: 627 RVTKDGMVFLDIVQEISTPGARPAACTAETTTTVNSAACNVDINTRRVKTEAAVQSGDTM 686
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
+LAGL+ D G+P LSK+PI+GALF N + E+ + TP +V+ ++
Sbjct: 687 MLAGLIDDSTTDGSVGVPFLSKLPIVGALFGRKTQNTDRREVIVLITPSIVR--NPKESR 744
Query: 429 RPDDHYSV 436
D Y+
Sbjct: 745 DLTDEYAR 752
>gi|157163858|ref|YP_001466818.1| PP family ATPase [Campylobacter concisus 13826]
gi|157101371|gb|EAT98651.2| type II and III secretion system protein [Campylobacter concisus
13826]
Length = 508
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 57/288 (19%), Positives = 112/288 (38%), Gaps = 31/288 (10%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSS 224
+K + + + QV + V+I V + + G S +
Sbjct: 207 TATPSQLKRVEKYIAEMQRRLKKQVIIDVSIIAVDLNNEYKQGVDWSKFELGFNSYIGNP 266
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLD---RFSFETVLHALERATAIRTLAEPTLTAIS 281
G S S A + K S F + FS + +++ LE + ++ P +T ++
Sbjct: 267 GSSTSSYASWTNKGNSLSDGFGRTLNIAANLNFSLDGMINFLETNGKTKVVSSPKVTTLN 326
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVT------------THDYGVVLHFTPTVLSPGRIG 329
Q A + G Y+ + + ++ + G++L+ P V +I
Sbjct: 327 NQQALISVGDNINYRVMEETDNGSNNNNNNRLTTTYKQYSVFIGILLNLLPEVSDNNKIM 386
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKA---------DTTVELPSGGTIVLAGLLKDDIQQ 380
LRI +S + + +R+ T V++ SG TI+L GL+ +
Sbjct: 387 LRINPSLSSFKYAEDDTRSQNTAIREIAPDTVQKKLSTVVQVNSGDTIILGGLIGQTKDK 446
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
+PLL+ IP++G++F+++R TE+ TP +V + +
Sbjct: 447 QNTAVPLLADIPLIGSVFKSTRDGVRTTELIFVITPRVVDLEDAKPVQ 494
>gi|330813196|ref|YP_004357435.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486291|gb|AEA80696.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp.
IMCC9063]
Length = 518
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 49/295 (16%), Positives = 100/295 (33%), Gaps = 32/295 (10%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+ + E T + KV+ +++ + QV ++ I E +
Sbjct: 229 DSSYSPIQITEEITTRSIIVRGKEKDLDVVDKVIKEIDVRTK-QVLIEAFIVEADSTFEQ 287
Query: 212 QIGFQHSITGS----------------------SSGPSKSFAADFGGKFV-----SEGGD 244
+G + S GPS +
Sbjct: 288 ALGTRLGGAYSAKKDYKIGGIGASSMASVTPPAGPGPSAAAIGGVTDALTDFAAVGATSG 347
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ + + ALE +T++ P + + Q A+ T G + Y+ S
Sbjct: 348 IGILRQTGSAVLKAEITALEVLGKGKTISNPKVFTLDNQIATITQGEEISYQATGSEGAD 407
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
T + + + L TP+++ G + L I V+ + PS + T + +
Sbjct: 408 T--SFKEAALKLTVTPSIIGDGNVLLEIM--VNNNTVNRANAGEPSINKMEISTKLLVAD 463
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G +V+ G+ K+ + K P + +P+LG LF+ + + E+ I P ++
Sbjct: 464 GDIVVIGGIKKNKVFSSKSQTPGVGNLPVLGNLFKGKSKSDKLDELLIFIAPRIL 518
>gi|87200666|ref|YP_497923.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
gi|87136347|gb|ABD27089.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 748
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 53/286 (18%), Positives = 104/286 (36%), Gaps = 53/286 (18%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------- 245
+QV ++ I E+ D+ K++G Q G + + + ++ + G
Sbjct: 387 EQVLVEAIIVEISNDVAKELGVQMLFGGKNMPFAVTNYSNSSPNIIDIAGGLLADNLNQT 446
Query: 246 --------------------------------------SVKGVLDRFSFETVLHALERAT 267
+ + +++A++
Sbjct: 447 TTVVNGDTVTTTTNSTAGDLLRENAASKLLSARGAYTGFLTELSKDTYLGAIINAVQTDK 506
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVTTHDYGVVLHFTPT 321
L+ P +T + AS G + T + S ++ + G+ L TP
Sbjct: 507 NSNILSTPHITTNNNVPASILFGQEIPVSTGEALSGGNFSDTFRTIQRQNVGIELDVTPQ 566
Query: 322 VLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + I L ++ EVS V+ + R+ TTV + + L GLL D+ Q+
Sbjct: 567 INASNMIRLDLRQEVSSIAGTVSKTSNELIVNKREIKTTVTVGDREIVALGGLLDDNEQR 626
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+ +PLL IPILG F++ +R +T + + P +++ A R
Sbjct: 627 TLQKVPLLGDIPILGEAFKSRARSRVKTNLMVFIRPTILRNAADRQ 672
>gi|103485810|ref|YP_615371.1| type II and III secretion system protein [Sphingopyxis alaskensis
RB2256]
gi|98975887|gb|ABF52038.1| type II and III secretion system protein [Sphingopyxis alaskensis
RB2256]
Length = 732
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 74/524 (14%), Positives = 157/524 (29%), Gaps = 100/524 (19%)
Query: 3 YLQRTFFTMMSI-FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK----V 57
R + ++ L + L + AN+ V+ I + + ++ +++
Sbjct: 125 IRLRHIDAVAAVETLRPLVSAQGSLTANRNANSLVVADFADNIRRIRSLAASIDRDSSTS 184
Query: 58 IILQVPVDVQD--------------------VLVSDPTKADVVVHSPRTMYLF------- 90
I+ + V + ++ + +
Sbjct: 185 QIVTLKNAGAREIAAALQALVPAAGEGARAPVAIVPIDSSNAIALRGDQALVTRFVAMAN 244
Query: 91 ---GKNVGQANVIL-IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
K G + + L L + + R + ++
Sbjct: 245 ELDAKAAGGTELRVYWLEHANAETLLPTLQQLIGGGSDPVQRAGLPPASSSSSGGDGNAA 304
Query: 147 LHGMVRTIQDSQRAV---------ELSETFLSQSGRNQYANSSSKKVMNLLNI---AGED 194
+ + + + ANS ++++ L A
Sbjct: 305 PAAAAPASSSTGAGGSGSISTRGPAIVTRYEGANAIIVAANSEVQRMLGELIRQLDARRQ 364
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD---------- 244
QV ++ + E+ D K++G Q + G + + ++ ++ GG
Sbjct: 365 QVLVEAIVVEIGDDAAKRLGVQFLLGGKNIPFVATSYSNASPNILTLGGAYASTRISEET 424
Query: 245 ------------------------------------FSVKGVLDRFSFETVLHALERATA 268
+ F +++A++ T
Sbjct: 425 TTTDGTTVVTQTTSALGDALQEAAAAQLLSATGGFAGFAGDIGKNTIFGAIINAVKSDTT 484
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVL 323
LA P + + Q A F G T +V + G+ L TP V
Sbjct: 485 SNLLATPHIVTLDNQPAKFLVGQDVPITTGEQLGDNFENAFRTVQREEVGIKLEVTPQVN 544
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
G + + ++ EVS V++ + R +T + + G + + GLL DD ++
Sbjct: 545 GAGEVKMFLRQEVSSVAGPVSSRNSDLILNKRAFETVLTVDDGEILAIGGLLNDDERRTI 604
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
E IPLLS IP++G LF++ R +T + + P ++K
Sbjct: 605 ERIPLLSDIPLIGELFKSRSRTRAKTNLMVFIRPTILKSREDNA 648
>gi|77163786|ref|YP_342311.1| fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC
19707]
gi|254435512|ref|ZP_05049019.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus
oceani AFC27]
gi|76882100|gb|ABA56781.1| Fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC
19707]
gi|207088623|gb|EDZ65895.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus
oceani AFC27]
Length = 699
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 56/273 (20%), Positives = 102/273 (37%), Gaps = 31/273 (11%)
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
++ +K++ L+I QV ++ + D + +G + ++G A G
Sbjct: 430 AALRKLVASLDIPVR-QVLIESRVVIASSDFSRDLGVRFGLSGRGDTSGTFDQATTSGSL 488
Query: 239 VSEGGDFS--------------VKGVLDRFSFETVLHAL-------------ERATAIRT 271
+ D L L +
Sbjct: 489 NGTTQIINRETLELQDRLNVNFPVTKKDAAKIALALTNLPLGALLELELSALQAEGRGEV 548
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
++ P + + + A G + Y+ SS+GATSV+ + L TP + RI +
Sbjct: 549 ISNPRVITSNQKEAIIEQGTEIPYQRA-SSSGATSVSFKKAVLSLTVTPQITPDDRIIMD 607
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ V++ +G +PS RK T V + +G T+VL G+ + + + IP L +
Sbjct: 608 LG--VTKDSVGKVFNGVPSINTRKVATQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDL 665
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
P G LFR+ + E+ I TP ++K A
Sbjct: 666 PYAGILFRDKSEFNNKRELLIFVTPKIIKEGAR 698
>gi|325925811|ref|ZP_08187183.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118]
gi|325543797|gb|EGD15208.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118]
Length = 692
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 80/441 (18%), Positives = 155/441 (35%), Gaps = 49/441 (11%)
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
DP VV + + + G +V+ L +Q+L + + E +
Sbjct: 234 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQD 293
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ + V S + V + + + V+ L++
Sbjct: 294 TRSTAMDVAAASGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 353
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246
+QV ++ + E+ K++G Q + G + ++ A G ++ +
Sbjct: 354 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGT 412
Query: 247 VKGVLDRFS-------------------------------FETVLHALERATAIRTLAEP 275
G D S F ++ A++ T L+ P
Sbjct: 413 RSGNADDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 472
Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
++ + + A G + T + ++ D GV L P + + G I L
Sbjct: 473 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 532
Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
I+ EVS V+A + R+ +T V + +G + L GLL + +Q E +PLL
Sbjct: 533 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 592
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVE-----DDAKAF 443
+P LGALFR+ NR++T + + P +++ + ++ P +Y E D +A
Sbjct: 593 DVPGLGALFRHKSRNRDKTNLMVFIRPTVIRDAADAQRMTAPRYNYLRERQLADGDPEAA 652
Query: 444 FFNRVNKIYGPKEASEVEGQN 464
V + G +
Sbjct: 653 LDALVRDYLRAQPPQLPAGPS 673
>gi|301165498|emb|CBW25069.1| putative pilus assembly protein [Bacteriovorax marinus SJ]
Length = 609
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 65/359 (18%), Positives = 127/359 (35%), Gaps = 34/359 (9%)
Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
L K G +I + I ++ + + + + ++
Sbjct: 246 LVAKKNGVILMITTFEKAAEEQKKAIEQKKLTEKEVPLVTKVFP-----ISYATTKELIE 300
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
+ I + E T KK++++L+ QV ++ I EV +
Sbjct: 301 VLNNYITERGTLNEDVRTNSLIVKDTADTIERIKKIVDVLDTQTP-QVLIESKIVEVNEN 359
Query: 209 ILKQIGFQHSIT-----------------------GSSSGPSKSFAADFGGKFVSEGG-D 244
K+IG Q+ + G+++GP SF++ +
Sbjct: 360 YRKEIGLQNGVNFGYDPIGQIGSANPTVVGSDVLPGTNAGPGFSFSSAPSSGDGARSLFG 419
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+V + L LE + + +A P + + + A ++ + S+ G
Sbjct: 420 LTVTRFNRLLNLSFTLQLLETESKGKIVASPKVITQNKKKAVISTKETTSFSKSLSTNGQ 479
Query: 305 TS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + L TP V + G I L + + +A P + R+ T V
Sbjct: 480 AQEITFEEAEASLSLEVTPQVTNEGSISLELDLLKQQFGTRPSAAAPPDKQERRVTTNVL 539
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN-SRFNREETEIFIAATPFLV 419
+ +G TIV+ G+ + ++ G+P L IP++G LFR + E+ I TP +V
Sbjct: 540 VDNGSTIVIGGVYNYEKRESHSGVPFLKDIPLVGWLFRTPYAPEVIKQELLIFLTPRIV 598
>gi|296105083|ref|YP_003615229.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295059542|gb|ADF64280.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 213
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 3/200 (1%)
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
G + +D + F++ G ++ + L ALE+ + +A P L A
Sbjct: 12 GKVGQMTTLGSDLSVASATSHVGFNI-GRINGRLLDLELSALEQKQQVDIIASPRLLASH 70
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-- 339
Q AS G + Y+ S +GATSV + + + TP VL GR+ L++ + P
Sbjct: 71 MQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPVVLPGGRVRLKLHISENMPGQ 130
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
V+ G+ + ++ +T VE+ SG T+ L G+ + + +P L KIP LG LFR
Sbjct: 131 VLQQADGETLAIDKQEIETQVEVKSGETLALGGIFSQKNKTGSDSVPGLGKIPWLGQLFR 190
Query: 400 NSRFNREETEIFIAATPFLV 419
+ + E E+ + TP LV
Sbjct: 191 HDGKDNERRELVVFITPRLV 210
>gi|146339226|ref|YP_001204274.1| putative general secretion pathway protein D signal peptide
[Bradyrhizobium sp. ORS278]
gi|146192032|emb|CAL76037.1| Putative general secretion pathway protein D; putative signal
peptide [Bradyrhizobium sp. ORS278]
Length = 778
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 22/252 (8%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDFSVK 248
+ QV ++ TIAEV Q G Q I G P D ++ G+ +
Sbjct: 493 RPQRQVAIEATIAEVTLTDDLQFGVQSYIMSRDLGLKPDTGSFGDAASTALATAGNVVLN 552
Query: 249 GVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+ F+F +L AL T ++ L+ P+L I Q A+ G + +T ++
Sbjct: 553 RAIPGFNFLVGSATTPRLILSALHAVTDVKVLSNPSLVVIDNQVATLQVGNEIPIQTGTA 612
Query: 301 S------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------ 348
+ T A++ G++L P + + G + L ++ E+S + G N G+
Sbjct: 613 TVLTGNNTVASTTDYRSTGIILRVVPRINANGNVRLDVEQEISNALNGTNGGNGATNSLT 672
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P+ RK ++V + SG T++LAGL+ D + + GIP + +IP +G LF S N + T
Sbjct: 673 PTVATRKLRSSVAVASGQTVLLAGLISDTQNRTRNGIPGIDQIPGIGDLFSQSGNNVQRT 732
Query: 409 EIFIAATPFLVK 420
E+ I P +++
Sbjct: 733 ELIIFIRPQIIR 744
>gi|78064721|ref|YP_367490.1| type II and III secretion system protein [Burkholderia sp. 383]
gi|77965466|gb|ABB06846.1| type II and III secretion system protein [Burkholderia sp. 383]
Length = 781
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 55/306 (17%), Positives = 104/306 (33%), Gaps = 39/306 (12%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
Q + T + + + V++ L+ QV ++ I E+ +
Sbjct: 369 DDNQQGGMIQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELASNTQG 427
Query: 212 QIGFQHSITGSSSGPSKSFAADFG----------GKFVSEGGDFSVKGV----------- 250
+G Q + + G G + G + G+
Sbjct: 428 NLGIQWQVASGQFLGGTNLNPTAGLGNSIINLTAGGVTNAAGGITGGGLAANLGSLTQGL 487
Query: 251 --------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------- 295
+L + L+ P L + + A G
Sbjct: 488 NIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIATGSYSN 547
Query: 296 -KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRV 353
+ +++ + D G+ LH P + G + L++ TE S V +A P++
Sbjct: 548 LTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVAGTTSAQTGPTFTK 607
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R +T+ +G IVL GL++D+ Q +PLL IP +G LFR+ R +T + +
Sbjct: 608 RSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKIRAKTNLMVF 667
Query: 414 ATPFLV 419
P ++
Sbjct: 668 LRPVII 673
>gi|332529515|ref|ZP_08405473.1| type II and III secretion system protein [Hylemonella gracilis ATCC
19624]
gi|332041035|gb|EGI77403.1| type II and III secretion system protein [Hylemonella gracilis ATCC
19624]
Length = 509
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 96/248 (38%), Gaps = 27/248 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQI------------------------GFQHSITGSSSGPSKS 229
QV ++ I E + + + + G+ G +
Sbjct: 255 RQVLIEARIVEASDTFSRSLGARLGGAGGRSPSGGAGAGAGFGGSYSATAAGAGGGSFVN 314
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ G + S+ G + ALE + ++ P + A
Sbjct: 315 LPSPGLGGQPAGVFAVSIFGESAARFLNLEISALEADGKGKVVSSPRVVTADKVKALIEQ 374
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
G + Y+ VS+S+GATS++ ++L TP + G + L +VS+ +G +
Sbjct: 375 GTELPYQ-VSTSSGATSISFRKANLMLEVTPQITPEGNVILE--VDVSKDSVGQDTQAGF 431
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ + T V + +GGT+V+ G+ + ++ IP L +P LGALFR E+ E
Sbjct: 432 AIDTKHVKTQVLVENGGTVVIGGIYTQEERETVTKIPFLGDLPGLGALFRAKETRSEKRE 491
Query: 410 IFIAATPF 417
+ + TP
Sbjct: 492 MLVFITPK 499
>gi|327538204|gb|EGF24886.1| general secretion pathway protein D (outD) [Rhodopirellula baltica
WH47]
Length = 822
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 79/419 (18%), Positives = 160/419 (38%), Gaps = 53/419 (12%)
Query: 27 PPIKEANAAVINISDVEIGKGKKIS-IGLNKVIILQVPVDVQDV---LVSDPTKADVVVH 82
+ ++ I + + + +I IG ++++ ++ V L++ +A V
Sbjct: 211 AADEAEMSSTIAAAQLLLSDRGRIQPIGRGAILVVDSKDNIDRVQQMLIAMLPEATVQST 270
Query: 83 SPRTMYLFGKNVG---QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI-RV 138
S + G + G A+ + +++ L + + + +L + + I V
Sbjct: 271 SNPS---DGTSPGFQRPASPNVYDAMATEIIYLTPQFT-EASEMRESLEGALGEGTIVSV 326
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ +++ G ++ + +A + L++ QV +
Sbjct: 327 YEAENRILIKGNRAQLELASQAFK------------------------QLDVP-RAQVRI 361
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----------FVSEGGDFSVK 248
I +V + L+++G +S AD G F ++
Sbjct: 362 TALIYDVSLEELEELGVNWGRGFRLDTTDESALADLAGNVEKAVTFGTLGSGGASSFGIR 421
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGA 304
+ D F +L AL+ + + LA+P++TAI + AS Q S+
Sbjct: 422 TLTDTFDTSVLLRALDSSDEAKLLADPSITAIDRREASIKIVQQIPIVAASPAEGSNVVF 481
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
V D G++L TP + + I L++Q E S V + + P R A+TTV + +
Sbjct: 482 AQVEFKDAGIILKVTPRISNDNTIELQVQPEYSVKVGEIE--NNPVIDSRTAETTVRVAN 539
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
G L GL + I + G+P L + +G LFR+ E+E+ + P ++ P
Sbjct: 540 GHMFTLGGLRQKRIIEGTSGVPYLRDLKYVGKLFRSHSTEVRESELIVFLKPEIISPYD 598
>gi|153868094|ref|ZP_01998196.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
SS]
gi|152144586|gb|EDN71804.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
SS]
Length = 219
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 3/208 (1%)
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTL 272
GF T + G ++F + G + + + L A++ + +
Sbjct: 12 GFTSDNTLTGEGQGENFIVSLPAIVEGTPASLGLAIGKIGSYLLQLELSAMQSEGSGEII 71
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ P + + Q A T G + Y + V + L TP + RI + +
Sbjct: 72 SSPRIITGNQQEAIITQGSEIPYVESAGVGAVAQVQFKQAVLELKVTPQITPDDRINMEL 131
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ +N S R+ T V + +G T+VL G+ + +P LS +P
Sbjct: 132 SIKKDSVGARINGN--ISIDKREVKTNVLVDNGDTVVLGGVYERSSSNNITRVPFLSDLP 189
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
++G LF+ +++E+ I TP ++K
Sbjct: 190 LIGNLFKRRSSQDDKSELLIFVTPRIIK 217
>gi|55981352|ref|YP_144649.1| general secretion pathway protein PilQ [Thermus thermophilus HB8]
gi|55772765|dbj|BAD71206.1| general secretion pathway protein (PilQ) [Thermus thermophilus HB8]
Length = 757
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 73/353 (20%), Positives = 144/353 (40%), Gaps = 35/353 (9%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRF--IADSNIRVEMVSDTVVLHGMVRTIQD 156
+++ G+ +L++ E+ +A +E L + + V + + V Q
Sbjct: 414 IVVQTVPGQPVLSVR-GTEKQLAEVESLLAQIDRAPEQGPPVFQRAYQLSNAKAVELAQV 472
Query: 157 SQRAVEL----SETFLSQSGRNQYANSSSKKVMNLLNIAGED------------------ 194
Q A++ ++ +Q+ + A + N L + G
Sbjct: 473 LQEALKARQAQNQGQQNQALPTREATVVADPRTNTLIVTGTQEDLALVEGLIPKLDQPVP 532
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
QV+L+V I EV+ ++ + +G + + + + + F S L
Sbjct: 533 QVSLRVRIQEVQSNLTRSLGLKWNSIAGGNVAASILDSGLSLIFDS-------TRSLAAL 585
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
+ L AL++ R L + T ++ Q+A SG + V + D G+
Sbjct: 586 NIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVNDQVERV--PFDVGL 643
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGL 373
++ TP + + G+I L I+ E+S V GD+ + + TT+ + G T+VL GL
Sbjct: 644 IVEVTPQITADGQILLNIKAEISGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGGL 703
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+ Q ++G+PLL IP++G LF+ + E+ + T ++K A +
Sbjct: 704 TSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKETASAN 756
>gi|32477970|ref|NP_870964.1| general secretion pathway protein D (outD) [Rhodopirellula baltica
SH 1]
gi|32448527|emb|CAD78042.1| general secretion pathway protein D (outD) [Rhodopirellula baltica
SH 1]
Length = 822
Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats.
Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 16/245 (6%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----------FVSEG 242
QV + I +V + L+++G +S AD G
Sbjct: 356 RAQVRITALIYDVSLEELEELGVNWGRGFRLDTTDESALADLAGNVEKAVTFGTLGSGGA 415
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTV 298
F ++ + D F +L AL+ + + LA+P++TAI + AS Q
Sbjct: 416 SSFGIRTLTDTFDTSVLLRALDSSDEAKLLADPSITAIDRREASIKIVQQIPIVAASPAE 475
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
S+ V D G++L TP + + I L++Q E S V + + P R A+T
Sbjct: 476 GSNVVFAQVEFKDAGIILKVTPRISNDNTIELQVQPEYSVKVGEIE--NNPVIDSRTAET 533
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
TV + +G L GL + I + G+P L + +G LFR+ E+E+ + P +
Sbjct: 534 TVRVANGHMFTLGGLRQKRIIEGTSGVPYLRDLKYVGKLFRSHSTEVRESELIVFLKPEI 593
Query: 419 VKPVA 423
+ P
Sbjct: 594 ISPYD 598
>gi|162417759|ref|YP_001604484.1| type III secretion outer membrane pore YscC [Yersinia pestis
Angola]
gi|294496845|ref|YP_003560542.1| type III secretion outer membrane pore YscC [Yersinia pestis
Z176003]
gi|162354779|gb|ABX88726.1| type III secretion outer membrane pore YscC [Yersinia pestis
Angola]
gi|294352433|gb|ADE66490.1| type III secretion outer membrane pore YscC [Yersinia pestis
Z176003]
Length = 612
Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
E + L+R ++D+ I+ V + + Q + RA ++ S
Sbjct: 210 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 262
Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S +++ L++ + ++V +I ++ D L ++G + + +
Sbjct: 263 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 322
Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G S G S+ ++ LE + + ++ PTL A
Sbjct: 323 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 382
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345
+ K + YG +L TP VL+ G I L + E ++
Sbjct: 383 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 440
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P+ DT + G ++++ G+ +D++ +PLL IP LGALFR
Sbjct: 441 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 500
Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
T P ++ L+
Sbjct: 501 RRTVRLFIIEPRIIDEGIAHHLAL 524
>gi|289549028|ref|YP_003474016.1| general secretion pathway protein D [Thermocrinis albus DSM 14484]
gi|289182645|gb|ADC89889.1| general secretion pathway protein D [Thermocrinis albus DSM 14484]
Length = 637
Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats.
Identities = 62/315 (19%), Positives = 122/315 (38%), Gaps = 28/315 (8%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAEVR 206
V ++ + + + S + K++ L++ QV + ++ E+
Sbjct: 317 TVPPAIQTREGLRIGYDRGTNSLLVYATPKELENLQKLIKKLDVR-RKQVLIAASVVEMS 375
Query: 207 RDILKQIGFQHSITGSSSG-----------PSKSFAADFGGKFVSEGGDFSVKGVLDRF- 254
+G + I G+ G S + +F +S G G + F
Sbjct: 376 TTKALDLGVRWQILGTQGGGAFGGSTLQDLSSALLSGNFVLGLLSSSGRSITVGGTNLFF 435
Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVTT 309
+ LE+ T L+ P L + Q A G + + + +
Sbjct: 436 PDLVLLFSLLEKGTGFNLLSNPKLLTLDNQPAEIKVGQVVPFASGVKFDINGQPVITYDY 495
Query: 310 HDYGVVLHFTPTVLSPG---RIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPS 364
+ G+ L TP+V I L++Q + P IG + +P R+ ++ V + +
Sbjct: 496 KEVGLDLRITPSVSEKNLRLSISLQVQEIIDFLRPQIGTLSYAVPVTSNRQVNSEVVVEN 555
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G TI++ GL+ + EG+P L +P+LG LF+ ++ +FI TP++++ +
Sbjct: 556 GQTIIIGGLINTRALRSTEGVPGLQDVPVLGWLFKRKTTQEDKVSLFIFITPYVIE--SP 613
Query: 425 RDLSRPDDHYSVEDD 439
+LSR + D
Sbjct: 614 EELSRITQEHQKLAD 628
>gi|94267441|ref|ZP_01290880.1| type II and III secretion system protein:Secretin/TonB, short-like
[delta proteobacterium MLMS-1]
gi|93452009|gb|EAT02711.1| type II and III secretion system protein:Secretin/TonB, short-like
[delta proteobacterium MLMS-1]
Length = 555
Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats.
Identities = 65/323 (20%), Positives = 118/323 (36%), Gaps = 49/323 (15%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTI 202
++ G R +D +A ++ S + ++V ++ L QV L+ I
Sbjct: 206 MIVGTDRGREDGSQARQVIVNSKSGLVMVRALPGELREVETFLDALLENALRQVMLEAKI 265
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------- 252
EV D Q G +S F GG + +G +
Sbjct: 266 IEVELDEAFQSGINWGQLATSGSGEWQFGQIGGGTVLDDGVSAIAGNTGNIGVDNFDPID 325
Query: 253 ----------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
R +F + L+ + L+ P + + Q A G +
Sbjct: 326 GTATSAFGGVFTMAADRSNFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEYFV 385
Query: 297 TVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
T S + T +T G+ L TPT+ + L I+ VS+ +
Sbjct: 386 TDVSFSTRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQTKS 445
Query: 346 GDMPSYRV---------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ R++D+ V SG I++ GL++D ++ + G+P L +P++G
Sbjct: 446 FTVAGQTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLVGN 505
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
LFR R+++ +TE+ I P +V
Sbjct: 506 LFRQQRWSQRKTELVILLRPVVV 528
>gi|225850524|ref|YP_002730758.1| putative pilus [Persephonella marina EX-H1]
gi|225645353|gb|ACO03539.1| putative pilus [Persephonella marina EX-H1]
Length = 524
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 22/255 (8%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+K + + + QV ++ I EV Q G S + + S
Sbjct: 269 EKFLKKILSEVKKQVLIESKIVEVTLSDGMQYGINWSALLRNVAGASISLRQTLALPSSY 328
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G + V+ F V++AL I TL+ P + ++GQ+A +SG Y +
Sbjct: 329 G-----EVVVAGLDFNAVINALSSVGRIETLSNPRIRVLNGQTALISSGVVVPYWEKQIT 383
Query: 302 TGATSVTTHDY---------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------A 345
T T+ T GV+L TP + I + I ++
Sbjct: 384 TLGTTTVTQSVMYIRRSVLSGVLLGVTP-YIEGDHIMINIVPVSTKIEGTKQLVENNEVV 442
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+ P +++A T +++ G I++ G++ + + + IPLLS IP+ G LF+N + R
Sbjct: 443 AEAPVLNIKEAGTIIKVKDGDLIIIGGMINTEKRVEENKIPLLSNIPVFGNLFKNKKVYR 502
Query: 406 EETEIFIAATPFLVK 420
E+ E+ I P ++K
Sbjct: 503 EKKELIIFLKPRIIK 517
>gi|166713254|ref|ZP_02244461.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 648
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 47/281 (16%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223
DQV ++ I + +G + I G++
Sbjct: 366 RPVDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYQNTSAQRASEIA 425
Query: 224 ------------SGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIR 270
+ GG F + G + + F+ + L A+++
Sbjct: 426 NGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELSAMQQEGRGE 485
Query: 271 TLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
++ P + + + G + + + + +V + + L TPT+ +
Sbjct: 486 VVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELKVTPTITNDN 545
Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
R+ L + + E ++ G +P R+ +T V + G T+V+ G+ + ++
Sbjct: 546 RVFLSMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVYEFTDRESVA 605
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
+P L IP LG LF+ ++E+ E+ + TP +++ +
Sbjct: 606 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 646
>gi|21232657|ref|NP_638574.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767269|ref|YP_242031.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
str. 8004]
gi|21114464|gb|AAM42498.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66572601|gb|AAY48011.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
str. 8004]
Length = 648
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 45/282 (15%), Positives = 97/282 (34%), Gaps = 47/282 (16%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223
DQV ++ I + +G + +TG++
Sbjct: 366 RPVDQVLIESRIVIATDTFARDLGARFGVTGATGRGILSGSLESNVNYLNTSAQSRLEQA 425
Query: 224 ------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
+ GG S + + F+ + L A++
Sbjct: 426 NGGQVTTLPAHLFPSGLNVDLGAGGFTNSGAAGLAYTLLGSHFNLDIELSAMQEEGRGEV 485
Query: 272 LAEPTLTAISGQSASFTSGGQH-----LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
++ P + + + G + V+ +V + + L TPT+ +
Sbjct: 486 VSNPRIVTANQREGVIKQGREIGYVTISGAGVAGGGSQANVQFKEVLLELKVTPTITNDN 545
Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
R+ L + + E + G +P R+ +T V + G T+V+ G+ + ++
Sbjct: 546 RVFLNMNVKKDEVARFITLPQYGTVPEINRREVNTAVLVADGETVVIGGVYEFTDRESVA 605
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+P L IP LG LF+ ++E+ E+ + TP +++ +
Sbjct: 606 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASAA 647
>gi|16082740|ref|NP_395186.1| outer membrane secretin precursor [Yersinia pestis CO92]
gi|31795269|ref|NP_857730.1| outer membrane secretin precursor [Yersinia pestis KIM]
gi|31795473|ref|NP_857925.1| outer membrane secretin precursor [Yersinia pestis KIM]
gi|45478532|ref|NP_995359.1| putative type III secretion protein YscC [Yersinia pestis biovar
Microtus str. 91001]
gi|108793654|ref|YP_636804.1| type III secretion protein [Yersinia pestis Antiqua]
gi|145597132|ref|YP_001154596.1| type III secretion protein [Yersinia pestis Pestoides F]
gi|149192687|ref|YP_001293919.1| Type III secretion outer membrane pore protein [Yersinia pestis
CA88-4125]
gi|165927821|ref|ZP_02223653.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165940102|ref|ZP_02228636.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011759|ref|ZP_02232657.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214450|ref|ZP_02240485.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401969|ref|ZP_02307455.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422893|ref|ZP_02314646.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426864|ref|ZP_02318617.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229896868|ref|ZP_04512028.1| Type III secretion outer membrane pore protein [Yersinia pestis
Pestoides A]
gi|229900223|ref|ZP_04515359.1| Type III secretion outer membrane pore protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|270491097|ref|ZP_06208169.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis KIM D27]
gi|322836578|ref|YP_004210074.1| type III secretion outer membrane pore YscC [Yersinia pestis Java
9]
gi|155446|gb|AAA27638.1| KIM5 [Yersinia pestis]
gi|2996229|gb|AAC62552.1| Yop proteins translocation protein C homolog [Yersinia pestis KIM
10]
gi|3822061|gb|AAC69781.1| type III secretion protein [Yersinia pestis KIM 10]
gi|5832472|emb|CAB54929.1| putative type III secretion protein [Yersinia pestis CO92]
gi|45357154|gb|AAS58550.1| putative type III secretion protein YscC [Yersinia pestis biovar
Microtus str. 91001]
gi|108782201|gb|ABG16256.1| type III secretion protein [Yersinia pestis Antiqua]
gi|145212900|gb|ABP42306.1| type III secretion protein [Yersinia pestis Pestoides F]
gi|148872345|gb|ABR14835.1| Type III secretion outer membrane pore protein [Yersinia pestis
CA88-4125]
gi|165912012|gb|EDR30655.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920257|gb|EDR37558.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989366|gb|EDR41667.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204343|gb|EDR48823.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166958183|gb|EDR55204.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048697|gb|EDR60105.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054163|gb|EDR63990.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229686743|gb|EEO78823.1| Type III secretion outer membrane pore protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|229700139|gb|EEO88178.1| Type III secretion outer membrane pore protein [Yersinia pestis
Pestoides A]
gi|262364013|gb|ACY64350.1| outer membrane secretin precursor [Yersinia pestis D182038]
gi|270334840|gb|EFA45619.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis KIM D27]
gi|317374471|gb|ADV16646.1| type III secretion outermembrane pore forming protein [Yersinia
pestis]
gi|321161352|gb|ADW67058.1| type III secretion outer membrane pore YscC [Yersinia pestis Java
9]
Length = 607
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
E + L+R ++D+ I+ V + + Q + RA ++ S
Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 257
Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S +++ L++ + ++V +I ++ D L ++G + + +
Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317
Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G S G S+ ++ LE + + ++ PTL A
Sbjct: 318 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345
+ K + YG +L TP VL+ G I L + E ++
Sbjct: 378 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P+ DT + G ++++ G+ +D++ +PLL IP LGALFR
Sbjct: 436 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495
Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
T P ++ L+
Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519
>gi|115376293|ref|ZP_01463533.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella
aurantiaca DW4/3-1]
gi|310823667|ref|YP_003956025.1| type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1]
gi|115366718|gb|EAU65713.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella
aurantiaca DW4/3-1]
gi|309396739|gb|ADO74198.1| Type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1]
Length = 906
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 49/289 (16%), Positives = 94/289 (32%), Gaps = 36/289 (12%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
T + + ++ ++ L+ QV ++ I E + IG Q G +
Sbjct: 612 VRTNVLIVKDVRANIEKARALVRNLDTQTP-QVLIESRIVEATTAFSRSIGVQWGGRGQA 670
Query: 224 SGPSKSFAA--------------------------------DFGGKFVSEGGDFSVKGVL 251
+ + + F+
Sbjct: 671 NAATGNATGLIFPNTIGGFGSAGGGTPAGFSGDPGFAVNLPAPTTLGQGGALGFTFGSAG 730
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
L A E ++T++ P +T + +A +S + T +
Sbjct: 731 GALGLNLRLSAAENDGYVKTISAPKVTTLDNNTARI--SQGVSIPFSQTSANGANTTFIE 788
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVL 370
+ L TP + G I + I + ++P P+ + ++A+T V + G T V+
Sbjct: 789 ARLSLEVTPHITQDGSILMNIIAQNNQPDAANTGANGQPAIQRKEANTQVLVKDGDTTVI 848
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G+ IP SKIP+LG FR + + E+ I TP ++
Sbjct: 849 GGIYVRRGSTNHASIPFFSKIPVLGFFFRQTTERDDRQELLIFITPRIL 897
>gi|188990167|ref|YP_001902177.1| exported type II protein secretion system protein D [Xanthomonas
campestris pv. campestris str. B100]
gi|167731927|emb|CAP50113.1| exported type II protein secretion system protein D [Xanthomonas
campestris pv. campestris]
Length = 690
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 69/397 (17%), Positives = 134/397 (33%), Gaps = 43/397 (10%)
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
DP VV + + + G +V+ L +Q+L + + E +
Sbjct: 234 GDPALVQRVVRTALDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAEPGQE 293
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ + V + + V + + + V+ L++
Sbjct: 294 TRPTAVDVAASAGAAQAQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 353
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+QV ++ + E+ K++G Q + G + G + G
Sbjct: 354 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLLATQYSGAAPGIVPLAAAAAGT 412
Query: 251 LDRFS-----------------------------------FETVLHALERATAIRTLAEP 275
F ++ A++ T L+ P
Sbjct: 413 RSNNGEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 472
Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
++ + + A G + T + ++ D GV L P + + G I L
Sbjct: 473 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 532
Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
I+ EVS V+ + R+ +T V + +G + L GLL + +Q E +PLL
Sbjct: 533 AIKQEVSAIAGPVSTQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 592
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+P LGALFR+ NR++T + + P +++ A
Sbjct: 593 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQ 629
>gi|21232854|ref|NP_638771.1| type II secretion system protein D [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66767075|ref|YP_241837.1| type II secretion system protein D [Xanthomonas campestris pv.
campestris str. 8004]
gi|21114682|gb|AAM42695.1| type II secretion system protein D [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66572407|gb|AAY47817.1| type II secretion system protein D [Xanthomonas campestris pv.
campestris str. 8004]
Length = 690
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 69/397 (17%), Positives = 134/397 (33%), Gaps = 43/397 (10%)
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
DP VV + + + G +V+ L +Q+L + + E +
Sbjct: 234 GDPALVQRVVRTALDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAEPGQE 293
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ + V + + V + + + V+ L++
Sbjct: 294 TRPTAVDVAASAGAAQAQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 353
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+QV ++ + E+ K++G Q + G + G + G
Sbjct: 354 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLLATQYSGAAPGIVPLAAAAAGT 412
Query: 251 LDRFS-----------------------------------FETVLHALERATAIRTLAEP 275
F ++ A++ T L+ P
Sbjct: 413 RSNNGEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 472
Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
++ + + A G + T + ++ D GV L P + + G I L
Sbjct: 473 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 532
Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
I+ EVS V+ + R+ +T V + +G + L GLL + +Q E +PLL
Sbjct: 533 AIKQEVSAIAGPVSTQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 592
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+P LGALFR+ NR++T + + P +++ A
Sbjct: 593 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQ 629
>gi|312143742|ref|YP_003995188.1| type II and III secretion system protein [Halanaerobium sp.
'sapolanicus']
gi|311904393|gb|ADQ14834.1| type II and III secretion system protein [Halanaerobium sp.
'sapolanicus']
Length = 431
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 69/339 (20%), Positives = 134/339 (39%), Gaps = 51/339 (15%)
Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
+ T+Y+ + N+ K + +L + L++ +D N + + S
Sbjct: 95 TENTIYVSSRE----NIEAQDK--KLIKKNYLLENINSERAIEHLQKIFSDLNF-INLES 147
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
D ++L + ++ Q+ +L + QV +K I
Sbjct: 148 DGILLE---ASEKEHQQIEKLIAGLD----------------------RPQKQVLIKARI 182
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
E+ R+ +K++G F+ + K ++ L
Sbjct: 183 EEISRNKVKELGINPDQLSE-------------LSFIKDDSGSIEKIRVNWPD---TLKI 226
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTP 320
LE A LA P+L + Q A G Q K V +S++ + G+VL F P
Sbjct: 227 LEEEGASNILANPSLMTLDRQKAKLVIGDQIPVKLERVEGDNIVSSLSYIEAGIVLEFLP 286
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+++ +I L I+ V+ V + +P+ R A+TTV L + + + GL+K+D +
Sbjct: 287 KIINDNQILLEIKPSVNSI-GQVVSDGLPAVNSRSAETTVILENEQVLAIGGLIKEDEIK 345
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP S++P+ G LF++ + +E+ I +P ++
Sbjct: 346 SLSKIPFFSELPLFGNLFKSEKSTVMNSELMIFISPEII 384
>gi|320451127|ref|YP_004203223.1| general secretion pathway protein [Thermus scotoductus SA-01]
gi|320151296|gb|ADW22674.1| general secretion pathway protein [Thermus scotoductus SA-01]
Length = 754
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 67/298 (22%), Positives = 124/298 (41%), Gaps = 29/298 (9%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------------ 194
L +++ +++A ++ ++ + A + + N L + G
Sbjct: 467 LAKVLQEALQARQA-QVPQSQAQPQAPTRQATVVADERTNTLIVTGTQEDLALVEGLIPK 525
Query: 195 ------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
QV L+V I EV+ + + +G + + + + + F S
Sbjct: 526 LDQAVPQVNLRVRIQEVQSNFTRNLGIKWNTIAGGNVAASILDSGLSLIFDS-------T 578
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
L + L AL+R R L + T ++ Q+A SG L + V
Sbjct: 579 RSLAALNILATLEALQRQGLSRALRDVNQTVLNNQTARLQSGETFLIRRVV--NDRVERV 636
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGT 367
D G+++ TP + + G+I L I+ EVS V GD+ + + TT+ + G T
Sbjct: 637 PFDIGIIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVRDGQT 696
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+VL GL + Q+++G+PLL IP++G LF+ + E+ + T ++K A R
Sbjct: 697 VVLGGLTSQENTQVQQGVPLLMDIPLIGELFKQRSQETTDRELLVVITADILKETASR 754
>gi|315500691|ref|YP_004089492.1| type II and III secretion system protein [Asticcacaulis excentricus
CB 48]
gi|315418703|gb|ADU15341.1| type II and III secretion system protein [Asticcacaulis excentricus
CB 48]
Length = 626
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 13/274 (4%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R V ET + + V+N ++ QVT++ +I EV + G
Sbjct: 334 RIVADKETNTVIVSAPEAERVRIQSVLNEVD-REPAQVTIEASIVEVTLNNEFSFGVDWQ 392
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ S + G + R + L+AL + +R ++ P +T
Sbjct: 393 TINGALSLSNYTTDSTSLAPQAPGFSVNYL----RSDIKAALNALSSKSKVRIVSAPKMT 448
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
A +AS G Q +S + +++ D GV L TP VL+ R+ +
Sbjct: 449 ARENATASLQIGDQVPIVKQNSQSTNGGNAPIVSTIDYRDTGVTLKVTPRVLNDNRVAMD 508
Query: 332 IQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ EVS + D P+ + RK ++++ +P G + L GL+ + G PLL
Sbjct: 509 VTQEVSSVARTQTSGIDSPTIKQRKLESSLIIPEGTVVALGGLISSSESDSEGGAPLLKD 568
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
IP LG LF+ N++ TE+ + +++ A
Sbjct: 569 IPGLGNLFKQRARNKDRTELIVLIQVTILRDPAA 602
>gi|459551|gb|AAA16704.1| fimbrial assembly protein [Pseudomonas aeruginosa PAO1]
Length = 727
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 35/269 (13%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228
++++ L+I QV ++ I E K +G + S
Sbjct: 451 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKDGNIGIKDEDG 509
Query: 229 --------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI----- 269
+ + FV G + G+ F + ++ L+
Sbjct: 510 MNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSGIGIGFITDNIILDLQPVGDGKDRQR 569
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
R +++P + ++A G + Y+ SSS ++ + + + L TP + RI
Sbjct: 570 RVVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 628
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ ++ P +P + + + + G TIV+ G+ ++ + E +P L
Sbjct: 629 VEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLG 688
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
++P LG LFR + E+ + TP +
Sbjct: 689 ELPYLGRLFRRDTVTDRKNELLVFLTPRI 717
>gi|88811950|ref|ZP_01127203.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis
Nb-231]
gi|88790834|gb|EAR21948.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis
Nb-231]
Length = 686
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 64/363 (17%), Positives = 131/363 (36%), Gaps = 37/363 (10%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ G ++ + L++ ++ I L FI + + + ++ ++ G
Sbjct: 322 RQTGNVMLVAPAAEIAAREKLELQAKQQIQQLAPLHSEFIQVNYAKAQDLAQLILGGGQK 381
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDI 209
S R + + + ++++ L+I QV ++ + D
Sbjct: 382 GRSLLSDRGTVNVDERTNTLITRDTEQNLDDIRRLVSKLDIPVR-QVLIESRVVIANDDF 440
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKF------------------------------- 238
++G + + + S S G
Sbjct: 441 TNELGVRFGYSRNQSNFGTSNHGAVIGGTQPGNVNFGQSTGFEVPAGSGNEGLLVDLPVT 500
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ G G + + + L A+E ++ P + + + A G Q ++
Sbjct: 501 AAAGSVGLAVGKIGSYLLQLELSAMENENRGNLISTPRVITTNQKEAYIKQGVQIPFQQA 560
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
+SS GATSV + + L TP + RI L + +V++ G P+ + T
Sbjct: 561 TSS-GATSVQFKEAVLGLTVTPQITPDDRILLDL--QVTKDSRGEQTNAGPAINTQSLGT 617
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V + +G TIVL G+ + + + +P ++P+LG LFRN+ E+ I TP +
Sbjct: 618 QVLVDNGETIVLGGVYERNKNRTINRVPFFGELPLLGWLFRNTVRVDNNKELLIFVTPKI 677
Query: 419 VKP 421
+K
Sbjct: 678 LKA 680
>gi|186897497|ref|YP_001874608.1| YscC/HrcC family type III secretion outer membrane protein
[Yersinia pseudotuberculosis PB1/+]
gi|186700523|gb|ACC91151.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pseudotuberculosis PB1/+]
Length = 607
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
E + L+R ++D+ I+ V + + Q + RA ++ S
Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 257
Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S +++ L++ + ++V +I ++ D L ++G + + +
Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317
Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G S G S+ ++ LE + + ++ PTL A
Sbjct: 318 KTTGDKSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345
+ K + YG +L TP VL+ G I L + E ++
Sbjct: 378 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P+ DT + G ++++ G+ +D++ +PLL IP LGALFR
Sbjct: 436 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495
Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
T P ++ L+
Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519
>gi|296113651|ref|YP_003627589.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4]
gi|295921345|gb|ADG61696.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4]
gi|326566933|gb|EGE17071.1| type IV pilus secretin PilQ [Moraxella catarrhalis 12P80B1]
gi|326568865|gb|EGE18935.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC8]
Length = 473
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 29/296 (9%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
+ G + + + + + + T + Q AN + ++ ++I +QV ++ I
Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241
Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGG----------------DFS 246
+ +++G G + G S+ + V+ GG
Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAMGRI 301
Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
G+L+ + L A++ ++ P + Q+A +SG Q Y+ + S +
Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
T + ++L TP + G+IGL++ + PV + + +T V +
Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+
Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473
>gi|326560015|gb|EGE10410.1| type IV pilus secretin PilQ [Moraxella catarrhalis 46P47B1]
Length = 473
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 29/296 (9%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
+ G + + + + + + T + Q AN + ++ ++I +QV ++ I
Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241
Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGG----------------DFS 246
+ +++G G + G S+ + V+ GG
Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAMGRI 301
Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
G+L+ + L A++ ++ P + Q+A +SG Q Y+ + S +
Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
T + ++L TP + G+IGL++ + PV + + +T V +
Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+
Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473
>gi|294791632|ref|ZP_06756780.1| putative type II and III secretion system protein [Veillonella sp.
6_1_27]
gi|294456862|gb|EFG25224.1| putative type II and III secretion system protein [Veillonella sp.
6_1_27]
Length = 432
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 9/275 (3%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L +V T+ + + LSE + ++ ++ QV L+ TI +
Sbjct: 165 LKNVVGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLVRAID-KEPKQVQLEATIIAME 223
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ K+ GF+ S D + + + G +F + L +E +
Sbjct: 224 QSYAKEQGFRWS-----WLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPELSLMESS 278
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324
+A+P++ A++G++A G + S G + G+ L++TP + +
Sbjct: 279 GKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 338
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
G + +I EVS P I V+ R+A T V L G +V+ GL+ + Q +
Sbjct: 339 DGGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 397
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP+L IP+LG LFR+SR ++ E+ + +V
Sbjct: 398 IPILGDIPLLGKLFRHSRKTKDSIEMLMLVRATVV 432
>gi|325914232|ref|ZP_08176582.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC
35937]
gi|325539487|gb|EGD11133.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC
35937]
Length = 778
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/307 (23%), Positives = 120/307 (39%), Gaps = 39/307 (12%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ET + +S + V+ L++ QV ++ IAEV + G
Sbjct: 454 VSAVAETNTLLVRSTPQSWNSIRDVIEKLDV-MPMQVHIEAQIAEVNLTGELRYGVNWYF 512
Query: 220 TG--------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD------------RFSFETV 259
+ +G + G + G + + +
Sbjct: 513 ENAVNAPGAATDNGVTNGTGIGLGAGLANAAGRNIWGDIAGKVGSGGLAWSFLGKNAAAI 572
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYG 313
+ AL+ T +R L P++ + A+ G + + S +TG +SV D G
Sbjct: 573 ISALDTVTNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTG 632
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVEL 362
V+L P V G + L I EVS P A R+ T +
Sbjct: 633 VILKVRPRVTKDGMVFLDIVQEVSSPGDRPTACASATATVNQAACNVDINTRRIKTEAAI 692
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-P 421
SG TI+LAGL++D G+P LSK+P+LG+LF N+ +E+ + TP +V+ P
Sbjct: 693 QSGDTIMLAGLIQDSTSDGSAGVPFLSKLPVLGSLFGQKTQNKRRSEVIVLLTPSIVRNP 752
Query: 422 VAMRDLS 428
+ R+L+
Sbjct: 753 MEARNLT 759
>gi|284432091|gb|ADB84853.1| PilQ [Bdellovibrio bacteriovorus]
Length = 726
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 54/328 (16%), Positives = 121/328 (36%), Gaps = 22/328 (6%)
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
LE R S +V+ + + + D R V T + +
Sbjct: 405 LEPLKVRMFPVSYAKVDELEKKIK-----DFLGDRGRVVGDVRTNALVVTDIEENLERAA 459
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSF 230
+++ L+ QV+++ I E + + IG S TG+ + PS +
Sbjct: 460 RLIASLD-TQPAQVSIEGXIVEAKESFTRNIGVNWSATGAPIKLGSTXRGPVNMNPSFNV 518
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
G + + +V + + L E ++ ++ P + +S + A
Sbjct: 519 NQSAAGSSGALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQT 578
Query: 291 GQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTE--VSEPVIGVNAG 346
+ + V+ + AT + L TP V + G + +++ +
Sbjct: 579 TEVPVRQVTQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQ 638
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ R+A+T V + +G T V+ G+ + + + G+P ++P + LF+ ++E
Sbjct: 639 GAFAVNSREANTRVLVKNGQTAVIGGIYQSEATDGEVGVPWFRQLPFVSYLFKTKNISKE 698
Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHY 434
++E+ I TP ++ + + +
Sbjct: 699 KSELLILLTPRIMGQIDNNAGNPTTTDF 726
>gi|307720370|ref|YP_003891510.1| type II and III secretion system protein [Sulfurimonas autotrophica
DSM 16294]
gi|306978463|gb|ADN08498.1| type II and III secretion system protein [Sulfurimonas autotrophica
DSM 16294]
Length = 504
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 54/270 (20%), Positives = 98/270 (36%), Gaps = 20/270 (7%)
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
L ++ + ++LL QV ++V + E+ D G S S
Sbjct: 209 ASLLTVNADKKDLQKIQNFLDLLMKRMHKQVLIEVKLIELVYDDSHSSGIDWSQLNVSLN 268
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ GG + + F L ++ ++ P + ++ Q A
Sbjct: 269 GTLGGTQGTGGNTFNNSYSIAYNFSTSNF-----FKYLNTFGDVKVMSNPKILTMNNQPA 323
Query: 286 SFTSGGQHLYKTVSSSTGATSVTT----------HDYGVVLHFTPTVLSPGRIGLRIQTE 335
G Q YK + S T T G+ L+ P + I + I
Sbjct: 324 VVNVGQQLSYKYQTGSVTTTGGTAAGTNTFSLGSTFIGITLYVIPEITDSNEILMSINPV 383
Query: 336 VSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
VS P ++++ + V++ +G +++ GL+ + + IP+L
Sbjct: 384 VSSLSADNTPTTSIREIPPDTKIKQMTSVVKVKNGQKVLIGGLISATKGKDSKKIPILGD 443
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
IPIL +FR + + TE+FI TP +VK
Sbjct: 444 IPILSTIFRYTNNKKSRTEMFILITPKIVK 473
>gi|51593921|ref|YP_068488.1| yscC; putative type III secretion protein [Yersinia
pseudotuberculosis IP 32953]
gi|51591618|emb|CAF25422.1| yscC; putative type III secretion protein [Yersinia
pseudotuberculosis IP 32953]
Length = 607
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
E + L+R ++D+ I+ V + + Q + RA ++ S
Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 257
Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S +++ L++ + ++V +I ++ D L ++G + + +
Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317
Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G S G S+ ++ LE + + ++ PTL A
Sbjct: 318 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345
+ K + YG +L TP VL+ G I L + E ++
Sbjct: 378 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P+ DT + G ++++ G+ +D++ +PLL IP LGALFR
Sbjct: 436 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495
Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
T P ++ L+
Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519
>gi|218458719|ref|ZP_03498810.1| pilus assembly secretion protein [Rhizobium etli Kim 5]
Length = 258
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 95/233 (40%), Positives = 142/233 (60%), Gaps = 21/233 (9%)
Query: 12 MSIFLFSSNPS----VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I + P+ + + + + +I I+ +++ +GLNK +++ +P D
Sbjct: 18 LAISVTGMAPASFGPLLTVDEARADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE L
Sbjct: 78 DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182
RRFI DS I VE+VSD +VL G VRT QD+ +A +L++ FL ++S
Sbjct: 138 RRFIPDSAINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 197
Query: 183 ------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + ++ SS
Sbjct: 198 AVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSS 250
>gi|78049214|ref|YP_365389.1| type II secretory pathway component [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78037644|emb|CAJ25389.1| type II secretory pathway component [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 759
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 74/317 (23%), Positives = 126/317 (39%), Gaps = 34/317 (10%)
Query: 149 GMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + ++ET + A SS + V+ L++ QV ++ IAEV
Sbjct: 432 GSVTLEVEGDKVGVSAVAETNTLLVRSSAQAWSSIRDVIERLDV-MPMQVHIEAQIAEVT 490
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFS 255
+ G + + P + G + G + + +
Sbjct: 491 LTGQLEYGVNWYFENAVNAPVNADGTGGAGLPSAAGRGIWGDVSGSVTNNGLAWTFLGKN 550
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTT 309
++ AL+R T +R L P++ + A+ G + + S +TG +SV
Sbjct: 551 AAAIISALDRVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQY 610
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGDMPSYRVRKAD 357
D GV+L P V G + L I EVS P +A R+
Sbjct: 611 IDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTSASTTTVNSAACNVDINTRRVK 670
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T + +G TI+LAGL+ D G+P+LSK+P++GALF N++ E+ + TP
Sbjct: 671 TEAAVQNGDTIMLAGLIDDSTSDGSAGLPILSKLPVVGALFGRKTQNKDRREVIVLITPS 730
Query: 418 LVKPVAMRDLSRPDDHY 434
+V+ ++ D Y
Sbjct: 731 IVR--NPQEARNLTDEY 745
>gi|300113065|ref|YP_003759640.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113]
gi|299539002|gb|ADJ27319.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113]
Length = 699
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 58/328 (17%), Positives = 108/328 (32%), Gaps = 46/328 (14%)
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
L I + T+ A L+ + +K
Sbjct: 390 ASNLAALIQSEENSLLSARGHATFDERTNTLLVMDTADRLA---------------ALRK 434
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
++ L+I QV ++ + D +++G + ++ G
Sbjct: 435 LVASLDIPVR-QVLIESRVVIASSDFSRELGVRFGLSKQDKVGGAFDQVTTSGSLNGTTQ 493
Query: 244 DFSV--------------KGVLDRFSFETVLHAL-------------ERATAIRTLAEPT 276
+ D L L + ++ P
Sbjct: 494 IINQETLELQDRLNVNFPVTKKDAAKIALALTNLPLGALLELELSALQAEGRGEVISNPR 553
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
+ + + A G + Y+ SS+GATSV+ + L TP + RI + + V
Sbjct: 554 VITSNQKEAIIEQGTEIPYQRA-SSSGATSVSFKKAVLSLKVTPQITPDDRIIMDLG--V 610
Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
++ +G +PS R+ T V + +G T+VL G+ + + + IP L +P G
Sbjct: 611 TKDSVGKVFAGVPSINTREVSTQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDLPYAGI 670
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAM 424
LFR+ + E+ I TP ++K A
Sbjct: 671 LFRDKTEFNNKRELLIFVTPKIIKEGAR 698
>gi|282856386|ref|ZP_06265665.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter
piscolens W5455]
gi|282585757|gb|EFB91046.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter
piscolens W5455]
Length = 566
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 57/331 (17%), Positives = 108/331 (32%), Gaps = 51/331 (15%)
Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
++ L+ + + V+ + +V+ G + +R + L +
Sbjct: 252 EAQKTAPLLKELAELHSPANRVLVDERQNLIVVTGTAFQQEKVRRTLRLLDA-------- 303
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
QV LK I EV D Q+ + S A
Sbjct: 304 -----------------PGRQVMLKARIIEVNDDASDQLETALNAVYDWWWGSYQNGALS 346
Query: 235 GGKFVSE-----------------------GGDFSVKGVLDRFSFETVLHALERATAIRT 271
G S G + L L R
Sbjct: 347 AGFAQSGRKPGTAEGALGNLDTSANLPGEIGSGIVQLAGTATRMLDFRLRTLVEQKKARV 406
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
LA+PT+T + G+ A+ + Y + + + G L TP + G I +
Sbjct: 407 LADPTVTVLDGEKATVKLVEKLKYVSRRDDAQNPTYDDEEVGPKLEVTPRIGRSGMITVS 466
Query: 332 IQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ EV + + G +P R +T + + G V+ GL K+ + + +P+L
Sbjct: 467 VSLATGEVIQWIRGGQGEQIPQTNSRTVETKIRVRDGEPFVIGGLFKESRSRTRASVPIL 526
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
S IP++G LF+ + +++ + P+++
Sbjct: 527 SSIPLIGELFKAKLDKKTRSQVVMILIPYIL 557
>gi|171319027|ref|ZP_02908154.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria MEX-5]
gi|171095782|gb|EDT40735.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria MEX-5]
Length = 633
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 60/297 (20%), Positives = 115/297 (38%), Gaps = 14/297 (4%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------GPSKSFAADF 234
+ V+ L++ + V ++ I +V+ LK+IGF ++ GS G
Sbjct: 317 EDVVRDLDV-EPELVQIEAAIIDVQDGALKEIGFDWALQGSQFRIASTTSGAGIGRDLGN 375
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
+ G +FS+ G SF + +HAL+ L+ P L ++G A T+
Sbjct: 376 ADRVRGNGPNFSIFGGSSALSFLSRIHALQTEGKASVLSRPKLATLNGIEAVLTNQQVFY 435
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTP--TVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSY 351
+ S+ + D G+ + P S G+ +R+Q + + +G +P
Sbjct: 436 PRV--SNERVAQLYQVDVGLQMRVVPAVVRRSDGKADIRLQVFIEDGSLGSQRVDGLPVT 493
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
T + +G ++++ G ++D + + +PLL IP+LGALFR + E
Sbjct: 494 SKSAITTQALVRNGESLLIGGYVRDVNDRGEAKVPLLGDIPLLGALFRFRSTQTDRQERL 553
Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
TP L+ D + + R+ + + +A +
Sbjct: 554 FLITPKLL-ATHDTDDTDDTPQAIGASHRERKVIERLTEHFASMDAGAPASGTTQEP 609
>gi|54306408|gb|AAV33391.1| type IV pilus biogenesis secretin PilQ [Moraxella catarrhalis 7169]
gi|326559645|gb|EGE10059.1| type IV pilus secretin PilQ [Moraxella catarrhalis 7169]
gi|326567677|gb|EGE17783.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC1]
gi|326568688|gb|EGE18759.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC7]
Length = 473
Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats.
Identities = 55/296 (18%), Positives = 119/296 (40%), Gaps = 29/296 (9%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
+ G + + + + + + T + Q AN + ++ ++I +QV ++ I
Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241
Query: 207 RDILKQIGFQHSITGSS---------------------SGPSKSFAADFGGKFVSEGGDF 245
+ +++G G + +G ++ + + G
Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMWQEGVAAGGHQNSHLNVDLGVDNAMGRI 301
Query: 246 SVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ + L + L A++ ++ P + Q+A +SG Q Y+ + S +
Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
T + ++L TP + G+IGL++ + PV + + +T V +
Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+
Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473
>gi|224437102|ref|ZP_03658083.1| hypothetical protein HcinC1_04000 [Helicobacter cinaedi CCUG 18818]
Length = 602
Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats.
Identities = 48/295 (16%), Positives = 106/295 (35%), Gaps = 18/295 (6%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+++ + + L + + LN + QV + V I ++
Sbjct: 215 TTSELKNKKDIIINKAAGLLTITATPKQIKRVESYLATLNNKIQKQVLIDVYIFNIQHSN 274
Query: 210 LKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ G + G+ + GDF++ S ++ L+
Sbjct: 275 NQTYGIDWNEFYKLGNLLTLPPNAEGSNNALTGVNNGDFAISIFSQGVSINRIVEFLQTY 334
Query: 267 TAIRTLAEPTLTAISGQSASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVL 316
+++++ P + ++ Q A + G Q + S + + + G++L
Sbjct: 335 GKVQSVSNPKVLTLNNQPAIISVGSVLRYFQNTTYQTTTQGTSIQNLSQTFPSVFAGILL 394
Query: 317 HFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
TP+V + I + ++S P+ ++ + V++ G IVL
Sbjct: 395 DVTPSVKNDKIILKINPSITKTKDISIENQTTALESPPNLSTKQLSSLVQVKDGEKIVLG 454
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
GL+ Q+ +P+L IP++ LF + +E E+ I +P +V+ A
Sbjct: 455 GLIDKTEGQILRKLPILGDIPLIKYLFSYKKNIKETQEMVIIISPHIVRLDAREQ 509
>gi|171321858|ref|ZP_02910757.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
gi|171092856|gb|EDT38111.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
Length = 895
Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats.
Identities = 72/399 (18%), Positives = 144/399 (36%), Gaps = 51/399 (12%)
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V T+ ++ +A + + + L D + LR+ I ++ V+
Sbjct: 250 KVLDRHTLLVYPSQPEKA-----RNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVD 304
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+ +V+ TIQ + ++V+ L+I + VTL
Sbjct: 305 ERVNAIVMRDTPETIQVA------------------------ERVVMGLDIPQSE-VTLD 339
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
V + EV + +G Q+ S + A + + +
Sbjct: 340 VQVLEVNMNDSLDLGVQYPGKVQFSALGGAEGAALTLGDLLRMNRDRIGVSSESGGLALA 399
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLH 317
+ L++ +TLA P + + + AS G + T +++ G SV+ D G++L
Sbjct: 400 IDMLQKRGKTKTLANPKIRVRNLEKASIKIGERVPIVTTTNANGVVTESVSYQDVGLMLK 459
Query: 318 FTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
P + + +++ EVS S R A+T + +G T +LAGL+
Sbjct: 460 VEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAYSLGTRNAETLMTAKNGETQILAGLV 519
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
K + G+P +S +P+LG LF ++ + E +EI + TP + + +
Sbjct: 520 KRNESDSIAGLPGISGLPVLGRLFGSNSRSNERSEIVLLITPHIERNLD----------- 568
Query: 435 SVEDDAKAFFFNRVNKIYG-----PKEASEVEGQNYKGA 468
F +++ + G++ G
Sbjct: 569 LPLSAVTTFLSGTESRVTTEALTLESAQAVPAGRSSDGP 607
>gi|313143572|ref|ZP_07805765.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313128603|gb|EFR46220.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 605
Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats.
Identities = 48/295 (16%), Positives = 106/295 (35%), Gaps = 18/295 (6%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+++ + + L + + LN + QV + V I ++
Sbjct: 218 TTSELKNKKDIIINKAAGLLTITATPKQIKRVESYLATLNNKIQKQVLIDVYIFNIQHSN 277
Query: 210 LKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ G + G+ + GDF++ S ++ L+
Sbjct: 278 NQTYGIDWNEFYKLGNLLTLPPNAEGSNNALTGVNNGDFAISIFSQGVSINRIVEFLQTY 337
Query: 267 TAIRTLAEPTLTAISGQSASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVL 316
+++++ P + ++ Q A + G Q + S + + + G++L
Sbjct: 338 GKVQSVSNPKVLTLNNQPAIISVGSVLRYFQNTTYQTTTQGTSIQNLSQTFPSVFAGILL 397
Query: 317 HFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
TP+V + I + ++S P+ ++ + V++ G IVL
Sbjct: 398 DVTPSVKNDKIILKINPSITKTKDISIENQTTALESPPNLSTKQLSSLVQVKDGEKIVLG 457
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
GL+ Q+ +P+L IP++ LF + +E E+ I +P +V+ A
Sbjct: 458 GLIDKTEGQILRKLPILGDIPLIKYLFSYKKNIKETQEMVIIISPHIVRLDAREQ 512
>gi|32471402|ref|NP_864395.1| protein transporter [Rhodopirellula baltica SH 1]
gi|32443243|emb|CAD72074.1| conserved hypothetical protein-putative protein transporter
[Rhodopirellula baltica SH 1]
Length = 521
Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 88/241 (36%), Gaps = 12/241 (4%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV L+ I V D Q G G + + G E + +
Sbjct: 272 PQVVLEAIICVVSPDSGFQFGLDWQHAVEMDGVKELSLSASGLALNGELSQAGLDAIFSD 331
Query: 254 F-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-------AT 305
F + + L + A P + A G+ A+ + + +
Sbjct: 332 FGNTSAFVRLLSEKGYLTIRATPHVMAKDGEQANIAINRETFFSVQPPGSTGNNSVFFQQ 391
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVE 361
++ D G++L TP + + EVSE ++ P R TTV
Sbjct: 392 NIQKVDAGIMLDITPHIRGDEVTIDIEKAEVSEDVRNATPALSINQYPIINRRSVSTTVS 451
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G TIV+ GL++ + IP LS++P +G LF+ ++ + E+ I +P +V+
Sbjct: 452 VKDGKTIVIGGLVQRETVDRVNRIPGLSRLPGVGYLFQTTQRQTRDAEVVIFISPRIVRS 511
Query: 422 V 422
Sbjct: 512 T 512
>gi|285019414|ref|YP_003377125.1| general secretion pathway protein d [Xanthomonas albilineans GPE
PC73]
gi|283474632|emb|CBA17131.1| probable general secretion pathway protein d [Xanthomonas
albilineans]
Length = 772
Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats.
Identities = 75/323 (23%), Positives = 120/323 (37%), Gaps = 40/323 (12%)
Query: 149 GMVRTIQDSQRAVELS--ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + ET A S + V+ L++ QV ++ +AEV
Sbjct: 437 GSVTLEVQGDKVGVAAVEETNTLLVRSTPQAWRSIRDVVEKLDV-MPMQVHIEAQVAEVS 495
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKG 249
Q G S + + AA+ G G G V
Sbjct: 496 LTGDLQYGVNWFFENSVNASTDGSAANGTGIGRGAGLPSAAGRKIWGDIAGKIGSDGVGW 555
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ 303
+ V+ AL++ T ++ L P++ + A+ G + + S +TG
Sbjct: 556 TFLGRNAAAVITALDKVTNLKLLQTPSVFVRNNAEATLNVGTRIPINSTSINTGIGIDSS 615
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------------IGVNAGDMPSY 351
+SV D GV+L P V G + L I EVS P + +
Sbjct: 616 YSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPSARPAACTAGTTNVVNTSACNVDI 675
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R+ T + SG TI+LAGL+ D G+P LSK+P++GALF + E+
Sbjct: 676 NTRRVKTEAAVQSGDTIMLAGLINDSTVDSSLGVPFLSKMPVIGALFGQKGQQKNRNEVI 735
Query: 412 IAATPFLVKPVAMRDLSRPDDHY 434
+ TP +V+ ++ D Y
Sbjct: 736 VLLTPTIVR--DPQEARNLTDEY 756
>gi|226939985|ref|YP_002795058.1| type II and III secretion system protein [Laribacter hongkongensis
HLHK9]
gi|226714911|gb|ACO74049.1| type II and III secretion system protein [Laribacter hongkongensis
HLHK9]
Length = 616
Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats.
Identities = 75/363 (20%), Positives = 128/363 (35%), Gaps = 72/363 (19%)
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
N+ V + +V+ G QR + +++L+Q
Sbjct: 266 PVRNVMVNPETGVLVVRGT-------QRQQKQVQSYLAQVRNASL--------------- 303
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
QV ++ TIAEV Q G S G + G + G G +
Sbjct: 304 --RQVMIEATIAEVELTRDYQAGVDWSRIGDGKNWQFASNFSGNGLSQNAGNPAQYFGTV 361
Query: 252 D----------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
S + LE R L+ P L A++ QSA Y
Sbjct: 362 GQVLQGSTTPAFTGLYRSGSLSAAIRLLEGFGRTRVLSSPKLMALNNQSAILKVVDNVPY 421
Query: 296 ------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
++T + + + G+V++ TP + GR+ L ++ ++
Sbjct: 422 FTLKIKYEPGTTTNPPTTTYESELHSVPVGIVMNITPQIAPDGRVSLNVRPTITNITGFQ 481
Query: 344 -----------------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
G +P +VR+ ++T+ L SG VL GL++D I + GIP
Sbjct: 482 RDPAVQLVLADKGASDPGLGLVPQLQVRELESTLRLQSGEIGVLGGLIQDKIDKDSNGIP 541
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
LLS++P++GALF + + +TE+ + P LV + L+ F
Sbjct: 542 LLSQLPVVGALFGLRKESARKTELVVFLKPTLV---SQPSLTTDLSALRNALPDSRFLDG 598
Query: 447 RVN 449
R +
Sbjct: 599 RQD 601
>gi|326575064|gb|EGE24993.1| type IV pilus secretin PilQ [Moraxella catarrhalis O35E]
Length = 473
Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats.
Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 29/296 (9%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
+ G + + + + + + T + Q AN + ++ ++I +QV ++ I
Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241
Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGG----------------DFS 246
+ +++G G + G S+ + V+ GG
Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAMGRI 301
Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
G+L+ + L A++ ++ P + Q+A +SG Q Y+ + S +
Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
T + ++L TP + G+IGL++ + PV + + +T V +
Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+
Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473
>gi|254522160|ref|ZP_05134215.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
gi|219719751|gb|EED38276.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
Length = 733
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 23/260 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----------A 231
+V+ L++ QV ++ +AEV + G + G +
Sbjct: 446 EVIEKLDV-MPLQVHIEAQVAEVALTGDLKYGVNWFFDNAVLGQKLTGALGGVTLPAAAG 504
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
+ + G + + V+ AL++ T +R L P++ + A+ G
Sbjct: 505 GSWSSFAGAVTGADGLGWAFTGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGD 564
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------ 340
+ T ++ +SV D GV+L P V G + L I EVS
Sbjct: 565 KVPINTTTVNTGVGTSSYSSVQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASDVPETC 624
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
P +K T + SG TI+LAGL+ D GIP LSKIP++GALF
Sbjct: 625 NPTERNCNPRISTKKLSTEAAVQSGDTIMLAGLITDSATDGSSGIPGLSKIPVVGALFGQ 684
Query: 401 SRFNREETEIFIAATPFLVK 420
+E+ + TP +V+
Sbjct: 685 KTRTSRRSEVIVLLTPTIVR 704
>gi|294666182|ref|ZP_06731437.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292604047|gb|EFF47443.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 668
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 73/413 (17%), Positives = 145/413 (35%), Gaps = 44/413 (10%)
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
DP VV + + + G +V+ L +Q+L + + E +
Sbjct: 212 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQD 271
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ + V + + V + + + V+ L++
Sbjct: 272 TRTNAVDVAAATGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 331
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246
+QV ++ + E+ K++G Q + G + ++ A G ++ +
Sbjct: 332 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGT 390
Query: 247 VKGV-------------------------------LDRFSFETVLHALERATAIRTLAEP 275
G + F ++ A++ T L+ P
Sbjct: 391 RSGNAEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 450
Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
++ + + A G + T + ++ D GV L P + + G I L
Sbjct: 451 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 510
Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
I+ EVS V+A + R+ +T V + +G + L GLL + +Q E +PLL
Sbjct: 511 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 570
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
+P LGALFR+ NR++T + + P +++ A Y+ D +
Sbjct: 571 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRD-AADAQRMTAPRYNDLRDRQL 622
>gi|317407766|gb|EFV87693.1| hypothetical protein HMPREF0005_03214 [Achromobacter xylosoxidans
C54]
Length = 675
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 50/293 (17%), Positives = 90/293 (30%), Gaps = 31/293 (10%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF----SVKGVL 251
V ++ I +V + + ++G + S A + G+
Sbjct: 308 VEIEAMIVDVNSEAISELGVNWGVNVGRSSIGYGDLALKPSGGLPVDSAAKLSPGTLGLS 367
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
S + AL+ A L++P++ A +VT
Sbjct: 368 LGTSLAARVRALQSRGAANILSQPSILTADNLGAMIDLSETFYI--SLRGERVATVTPVT 425
Query: 312 YGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
G L TP + G++ L + E V +P+ R T + T+
Sbjct: 426 VGTSLRVTPRYIAAAQGGQVELTVDIEDGSVQSEVEIDGLPTVRKSNISTLAVVGDQQTL 485
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-------- 420
++ G + + +PLL IP+LG LF + + E P LV
Sbjct: 486 LIGGYNSSQNTEQVDKVPLLGDIPLLGTLFSSKSKTVQRRERLFLIRPRLVSINGVSVAA 545
Query: 421 ---------PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
P ++ P D A+ + +I G V+G+
Sbjct: 546 PANIVTASNPSFGVAVAAPWDEKPAASAAQF-----LERIQGGSGLRAVDGRR 593
>gi|9885640|gb|AAG01463.1|AF282857_12 hrcC gene product [Pantoea stewartii subsp. stewartii]
Length = 677
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 71/468 (15%), Positives = 139/468 (29%), Gaps = 31/468 (6%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73
L + + + V+ + G + +S+ Q D + V+
Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPRYLSLVKRFSEQRQKKEDRRKVMTFPL 183
Query: 74 --PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRR 129
+ AD +H + G A ++ L+ ++ + +
Sbjct: 184 KYASVADRTIHYRDQTLVI---PGVATMLNELMNGKRAAPVSASGAEGTIGGADNAAMMQ 240
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
R+ ++ G + +S + + + + ++ L+N
Sbjct: 241 NTQSLLARLSNHANNTNRPGDRDNNSVDDLSGRISADVRNNALLIRDDDKRREEYAQLIN 300
Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
Q V + I ++ R L ++ T S + G FVS
Sbjct: 301 KIDIPQNLVEIDAVIIDIDRTALNRLEANWQATLGGVTGGTSLMSGSGTLFVS------- 353
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
D F + ALE +A P++ + Q A +
Sbjct: 354 ----DFKRFFADIKALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 407
Query: 308 TTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365
G L TP + +++ ++ + + N + R T +
Sbjct: 408 QPVTAGTSLQVTPRAVGHQDHASIQLVIDIEDGHVETNNDGQATGVKRGTVSTQALISEN 467
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+VL G ++ + IPLL IP LG LF ++R + E TP L+
Sbjct: 468 RALVLGGFHVEESGERDRRIPLLGDIPWLGRLFTSTRHEISQRERLFILTPRLIGDQTDP 527
Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIY--GPKEASEVEGQNYKGAIGF 471
D+ DA A R + + E + + + GF
Sbjct: 528 TRYVSADNRQQLSDAMARVERRHSNVNLQDMVENALRDLAERQTPAGF 575
>gi|294625731|ref|ZP_06704351.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292599967|gb|EFF44084.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 763
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 70/301 (23%), Positives = 117/301 (38%), Gaps = 29/301 (9%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ET A SS + V+ L++ QV ++ +AEV Q G
Sbjct: 449 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGELQYGVNWYF 507
Query: 220 TGSSSGPSKSFAADFG--------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
+ + + + A G + V + V+ AL+ T +R
Sbjct: 508 ENAVNAATAAGGAGLPSAAGRSIWGDISGTVTNGGVGWTFLGKNAAAVISALDTVTNLRL 567
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSP 325
L P++ + A+ G + + S +TG +SV D GV+L P V
Sbjct: 568 LQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKD 627
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVLAGL 373
G + L I E+S P A + R+ T + SG T++LAGL
Sbjct: 628 GMVFLDIVQEISTPGARPQACTAAATTTVNSAACNVDINTRRVKTEAAVQSGDTMMLAGL 687
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
+ D + G+P LSK+P++GALF + E+ + TP +V+ ++ D
Sbjct: 688 IDDSTTDISAGVPFLSKLPVVGALFGQKNKDTNRREVIVLITPTIVR--NPQEARNLTDE 745
Query: 434 Y 434
Y
Sbjct: 746 Y 746
>gi|262273424|ref|ZP_06051238.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP
101886]
gi|262222402|gb|EEY73713.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP
101886]
Length = 578
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 70/424 (16%), Positives = 142/424 (33%), Gaps = 45/424 (10%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV--LVSDPTKADVVVHSPRT--- 86
+ + + ++ ++ + + + + DV + T +V R
Sbjct: 160 FQDIPVRSVLQMVAEHNGFNLVVSDTVQGSLTLRLDDVPWQKALDTILNVKGLDKRQTGN 219
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
+ L I + + +L + ++ A++ EM+ +
Sbjct: 220 ILLVAPK------IELDEQERLVLEKRRQARELASLRSEVIQIKYANAVDLKEMLGGSDA 273
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G + + + T K +++ L+I DQV ++ I V
Sbjct: 274 EEGGISLLSERGSIAVDPRTNSLVIKDLSDNIEVVKSLIDSLDIP-VDQVEIEARIVTVD 332
Query: 207 RDILKQIGFQHSITGSSSGPSKS-----------------------------FAADFGGK 237
L +IG + + + + + G
Sbjct: 333 EGTLDEIGVRWGLNSQNGNFTMGGSIEGNWQHSDRIDVGADNEPDELMLDDLLNVNLGAI 392
Query: 238 FVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ FSV + + L AL+ + ++ P L + + A G + Y
Sbjct: 393 SPNATSIAFSVANLGKDLLLDLELSALQAESRAEIISSPRLLTTNKRPAYIEQGTELPYL 452
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVR 354
SSS A + + L TP + ++ L +Q +P V G+ + +
Sbjct: 453 EASSSGAAAV-SFKKAVLSLSVTPQITPDNKLVLDLQVTQDKPAGTVKAGTGEAMAINTQ 511
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ T V + G T+VL G+ + ++ + + IPLL IP LG LFR + + E+ I
Sbjct: 512 RIGTQVLVNDGETVVLGGIYQHEMMEGVDKIPLLGDIPGLGQLFRRNYETTGKRELLIFV 571
Query: 415 TPFL 418
TP +
Sbjct: 572 TPRV 575
>gi|269797724|ref|YP_003311624.1| type II and III secretion system protein [Veillonella parvula DSM
2008]
gi|269094353|gb|ACZ24344.1| type II and III secretion system protein [Veillonella parvula DSM
2008]
Length = 432
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 9/275 (3%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L +V T+ + + LSE + ++ ++ QV L+ TI +
Sbjct: 165 LKNVVGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLVCAID-KEPKQVQLEATIIAME 223
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ K+ GF+ S D + + + G +F + L +E +
Sbjct: 224 QSYAKEQGFRWS-----WLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPELSLMESS 278
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324
+A+P++ A++G++A G + S G + G+ L++TP + +
Sbjct: 279 GKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 338
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
G + +I EVS P I V+ R+A T V L G +V+ GL+ + Q +
Sbjct: 339 DGGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 397
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP+L IP+LG LFR+SR ++ E+ + +V
Sbjct: 398 IPILGDIPLLGKLFRHSRKTKDSIEMLMLVRATVV 432
>gi|307719942|ref|YP_003891082.1| type II and III secretion system protein [Sulfurimonas autotrophica
DSM 16294]
gi|306978035|gb|ADN08070.1| type II and III secretion system protein [Sulfurimonas autotrophica
DSM 16294]
Length = 502
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 23/272 (8%)
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
S + + NL+ + QV ++ I EV + Q+G + G S
Sbjct: 232 SGVLSVYDKKQNIDAISNLIKDVKKQFNKQVLIEAKILEVTLNKSHQLGINWDVVGKSVF 291
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
++ +V + +F +++A+++ I T++ P + ++GQSA
Sbjct: 292 SPGDTLNIQQSLGLTGAVAGTVNYSAN--NFNALINAIDQNGNIDTISNPRIKVLNGQSA 349
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDY----------GVVLHFTPTVLSPGRIGLRIQTE 335
+SG Y T + T + GV + TPTV+ GRI L +
Sbjct: 350 IISSGKLVPYWEKQVDTSQGTSTNNILVTYNRRDVLDGVTMGVTPTVMENGRIMLNVTPI 409
Query: 336 VSEP--------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
S GV+ P +++A T + + +++ GL+ I++ K+ +P
Sbjct: 410 SSSIESEKVYHDDQGVSVATAPIINIKEAGTIIYAKNNDLVLIGGLMSTSIKKNKQEVPF 469
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
LS +P++G+LF +E+ E+ I ++
Sbjct: 470 LSNLPLVGSLFTQVNNTKEKKELVILLRLKVI 501
>gi|313892802|ref|ZP_07826383.1| bacterial type II and III secretion system protein [Veillonella sp.
oral taxon 158 str. F0412]
gi|313442733|gb|EFR61144.1| bacterial type II and III secretion system protein [Veillonella sp.
oral taxon 158 str. F0412]
Length = 429
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 62/275 (22%), Positives = 117/275 (42%), Gaps = 9/275 (3%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L ++ T+ + + LSE + ++ ++ QV L+ TI +
Sbjct: 162 LKAVMGTVVKNDKMAVLSEQNEVIMHLTNGEKRRVENLVRAID-KEPKQVQLEATIIAME 220
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ K+ GF+ S D + + + G +F + L +E +
Sbjct: 221 QSYAKEQGFRWS-----WLSLTGHGDDKTNSYGAVTFGKTPSGEAYKFFVKPELSLMESS 275
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324
+A+P++ A++G++A G + S G + G+ L++TP + +
Sbjct: 276 GKAVLIAKPSIMALNGETAHILIGERIPVVEESEVNGERKRSTRYEEVGIKLNYTPIITA 335
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
G + +I EVS P I V+ R+A T V L G +V+ GL+ + Q +
Sbjct: 336 DGGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQQGEVLVIGGLMDNRDQHQIQK 394
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P+L IP+LG LFR+SR ++ E+ + +V
Sbjct: 395 VPILGDIPLLGKLFRHSRKTKDSIEMLVLVRATVV 429
>gi|294793490|ref|ZP_06758627.1| bacterial type II and III secretion system protein [Veillonella sp.
3_1_44]
gi|294455060|gb|EFG23432.1| bacterial type II and III secretion system protein [Veillonella sp.
3_1_44]
Length = 412
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 63/275 (22%), Positives = 116/275 (42%), Gaps = 9/275 (3%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L +V T+ + + LSE + ++ ++ QV L+ TI +
Sbjct: 145 LKNVVGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLVRAID-KEPKQVQLEATIIAME 203
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ K+ GF+ S D + + + G +F + L +E +
Sbjct: 204 QSYAKEQGFRWS-----WLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPELSLMESS 258
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324
+A+P++ A++G++A G + S G + G+ L++TP + +
Sbjct: 259 GKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 318
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ +I EVS P I V+ R+A T V L G +V+ GL+ + Q +
Sbjct: 319 DDGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 377
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP+L IP+LG LFR+SR ++ E+ + +V
Sbjct: 378 IPILGDIPLLGKLFRHSRKTKDSIEMLMLVRATVV 412
>gi|294638088|ref|ZP_06716347.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685]
gi|291088796|gb|EFE21357.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685]
Length = 400
Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats.
Identities = 80/420 (19%), Positives = 151/420 (35%), Gaps = 34/420 (8%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK-----VIILQVP 63
+ ++ + L + + + P + A + + + +++ L+ + V
Sbjct: 3 WRLLVLLLLACSARARETPLTVWFDHAPLRTVLQAVAEFAGLNLILSDELNIAATVHIVQ 62
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG--KQMLNLDILIERDIA 121
+L + D+ V + + L +L D
Sbjct: 63 TPWPQLLDALAEMYDLSVVTRDGILLVQSRERAQRRAPPAARPAAHLRSQRLVLHHADAL 122
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
+E +LR+ D + + G V V T +S
Sbjct: 123 TVEKSLRQR-----------RDLLGVGGSV---------VADVRTNALLLRTETTRLASV 162
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L++ Q+ L I + ++ L+++G + +S G + + F +
Sbjct: 163 AEWVTQLDVPLP-QIQLAAHIVSMSQEGLRELGIRWRNGTASEGEHEVRRREDEAYFSAG 221
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ + L ALER + +A P L A GQ AS G + Y +
Sbjct: 222 ----IQVAHIGGQALAMTLAALERQDKVAIIASPQLMAAHGQMASIKQGSELPYAVSNGE 277
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTT 359
G +++ + + + TP VL+ RI L +Q + P + + + ++ T
Sbjct: 278 RGVSTMEFKEAVLGMSVTPRVLADERIELALQITQNMPGRLVRQGDSEALAIDKQEISTQ 337
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V LP+G T VL G+ + Q EG P L+ IP+LG L R E E+ I TP L+
Sbjct: 338 VTLPNGDTAVLGGIFQYQRQDGYEGFPWLASIPLLGHLLRRDSQRSERRELVIFITPTLL 397
>gi|289663703|ref|ZP_06485284.1| general secretion pathway protein D [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 768
Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats.
Identities = 69/308 (22%), Positives = 112/308 (36%), Gaps = 36/308 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ET A SS + V+ L++ QV ++ +AEV G
Sbjct: 447 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGDLSYGVNWYF 505
Query: 220 TGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVLD------------RFSFETVLHAL 263
S + + G S G + + +++AL
Sbjct: 506 ENSVNAAADSATNGTGIGVGAGLASAAGRNIWGDIAGKVGEGGLAWSFLGKNAAAIINAL 565
Query: 264 ERATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVVLH 317
++ T +R L P++ + A+ + + S + +SV D GV+L
Sbjct: 566 DKVTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVILK 625
Query: 318 FTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSGG 366
P V G + L I EVS P A R+ T + SG
Sbjct: 626 VRPRVTKDGMVFLDIVQEVSSPGDRPTACQSATATINAAACNVDINTRRVKTEAAVQSGD 685
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
TI+LAGL+ D G+P LSK+P++GALF N E+ + TP +V+ ++
Sbjct: 686 TIMLAGLINDSTTDGSNGVPFLSKLPVVGALFGTKSRNSSRREVIVLITPSIVR--NPQE 743
Query: 427 LSRPDDHY 434
D Y
Sbjct: 744 ARNLTDEY 751
>gi|15805800|ref|NP_294498.1| general secretion pathway protein D [Deinococcus radiodurans R1]
gi|6458483|gb|AAF10350.1|AE001932_2 general secretion pathway protein D, putative [Deinococcus
radiodurans R1]
Length = 740
Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats.
Identities = 76/427 (17%), Positives = 154/427 (36%), Gaps = 41/427 (9%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L ++ ++ P+ + V+N + ++ + +++ + VQ V
Sbjct: 334 ALLAAQYPTLRVTPVGQTGQLVLNGAQAQLDTALALLEQVDRPAPVAESRTVQRVF---- 389
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
+ + + G L +L + D + + ++
Sbjct: 390 -----QLVNASAEEVKATLEGTLARDLTADSNNDVLPNVPVTATDANGNTTVVS--VPNA 442
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS---GRNQYANSSSKKVMNLLNIA 191
+ +T ++Q+A +++ + G + ++ V L +
Sbjct: 443 LGKTANQGTANAQAQTAQTPANTQQATLIADKRTNSLIVRGTPEQVAQVAELVPQLDQV- 501
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
Q+ ++V I EV L+ +G T + S F
Sbjct: 502 -VPQINVQVRIQEVNERALQSLGLNWRATFGGFNVAVSGGTGLAATFNPTQSFL------ 554
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQS--------------ASFTSGGQHLYKT 297
F+ L ALE R + + +T SGQ A+ + +
Sbjct: 555 -GFNIFPTLTALETQGLTRRVYDGNVTMQSGQRSLSATGGAQNASSGAAASVKSGGRLEI 613
Query: 298 VSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRV 353
S V DYG+ L F +P V G I LRI+ +V++P + A +P+ +
Sbjct: 614 NIPSAAGNIVRQIDYGLNLDFFSPQVAPDGTITLRIRGQVNQPATAITADSLPNLIDFTN 673
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
+A +T+ +G TI+++GLL + G+P LS +P +GA F R + ++++ +
Sbjct: 674 SEAQSTITFKNGQTILMSGLLGSTETTNRSGVPFLSSLPGVGAAFGEKRTEKTQSQLLVI 733
Query: 414 ATPFLVK 420
T +VK
Sbjct: 734 ITGTVVK 740
>gi|21244259|ref|NP_643841.1| general secretion pathway protein D [Xanthomonas axonopodis pv.
citri str. 306]
gi|21109904|gb|AAM38377.1| general secretion pathway protein D [Xanthomonas axonopodis pv.
citri str. 306]
Length = 763
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 70/305 (22%), Positives = 118/305 (38%), Gaps = 32/305 (10%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ET A SS + V+ L++ QV ++ +AEV G
Sbjct: 448 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGALSYGVNWYF 506
Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268
+ + P + + + G D V + ++ AL+ +
Sbjct: 507 ENAVTTPFNADGSGGPALPSAAGRNIWGDIAGRVTDGGVAWTFLGKNAAAIISALDTVSN 566
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322
+R L P++ + A+ G + + S +TG +SV D GV+L P V
Sbjct: 567 VRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSYSSVQYIDTGVILKVRPRV 626
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370
G + L I E+S P A + R+ T + SG T++L
Sbjct: 627 TKDGMVFLDIVQEISTPGARPAACTAATTTTVNSAACNVDINTRRVKTEAAVQSGDTMML 686
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGL+ D G+P LSK+PI+GALF N + E+ + TP +V+ ++
Sbjct: 687 AGLIDDSTTNGSVGVPFLSKLPIVGALFGRKTQNTDRREVIVLITPSIVR--NPKESRDL 744
Query: 431 DDHYS 435
D Y+
Sbjct: 745 TDEYA 749
>gi|9625382|ref|NP_039614.1| gene IV product [Enterobacteria phage I2-2]
gi|138048|sp|P15420|G4P_BPI22 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
Short=G4P; Flags: Precursor
gi|14922|emb|CAA32520.1| gene IV product [Enterobacteria phage I2-2]
Length = 428
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 81/450 (18%), Positives = 157/450 (34%), Gaps = 54/450 (12%)
Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
+TFF + LF+ A P+ N+ V + K K +I+ P
Sbjct: 1 MKTFFAKFIVALFAFTYFSAFAEPVTLNNSPVRSFVQWYSSKT-------GKSVIVN-PD 52
Query: 65 DVQDVLVSDPTKADV-------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
++ V + + V + + + N + L + E
Sbjct: 53 VKGNITVFNADVNNANIDDFFKSVLNANGLVVVAGNPAVVSTPLTKLASQPSNEETYDDE 112
Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
D E + + + + V T S + L++ F+ N
Sbjct: 113 SDGVAYEAVPQSAAPAVPADLTVRNFNV-------TRVRSSDVLPLAKIFVDS---NGGG 162
Query: 178 NSSSKKVMNLLNIAGEDQVT------------------LKVTIAEVRRDILKQIGFQHSI 219
N N L ++G QV ++ + E + F ++
Sbjct: 163 NVVDYPGNNSLVVSGSAQVMPALSDFITSIDVAREQVLIQSLMFETSVSNGVDLSFALAL 222
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
+ G + GG F G+ + L A++ + + ++ P +
Sbjct: 223 ASGGKVAGGFNTSALGTALSTAGGSF---GIFNGNILALSLQAVQSDSNSKVISTPRILT 279
Query: 280 ISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
SGQS + G + T + ++ D GV L TP V+ G++ L I
Sbjct: 280 QSGQSGYISVGQNVPFVTGKVTGEAASVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTI 339
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
T+ A D+ R+ TTV++ G T++L GL+ + +P +SKIP
Sbjct: 340 DTKADSLSNQAIASDI-ITNQRQIQTTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIP 398
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPV 422
++G LFR+ ++++ +F+ T +++ +
Sbjct: 399 LIGWLFRSHSDSKDDRTMFVLLTAHVIRAL 428
>gi|326562497|gb|EGE12814.1| type IV pilus secretin PilQ [Moraxella catarrhalis 103P14B1]
gi|326572679|gb|EGE22668.1| type IV pilus secretin PilQ [Moraxella catarrhalis CO72]
gi|326574278|gb|EGE24226.1| type IV pilus secretin PilQ [Moraxella catarrhalis 101P30B1]
Length = 473
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 29/296 (9%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
+ G + + + + + + T + Q AN + ++ ++I +QV ++ I
Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241
Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGG----------------DFS 246
+ +++G G + G S+ + V+ GG
Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWAMRQEGVAAGGHQNSHLNVDLGVDNAMGRI 301
Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
G+L+ + L A++ ++ P + Q+A +SG Q Y+ + S +
Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
T + ++L TP + G+IGL++ + PV + + +T V +
Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+
Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473
>gi|32266614|ref|NP_860646.1| hypothetical protein HH1115 [Helicobacter hepaticus ATCC 51449]
gi|32262665|gb|AAP77712.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 533
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 52/268 (19%), Positives = 104/268 (38%), Gaps = 20/268 (7%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKF 238
++ + LN + QV + V I V+ + G + G+ G
Sbjct: 241 ERYIAQLNDKIQKQVLIDVHILNVQHTDNQTYGIDWNEFYKLGNIMTLPAEHQNTSSGSI 300
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
S GG F++ + ++ L+ +++++ P + ++ Q A + G Y
Sbjct: 301 DSSGGRFAINIFSQGVNINRIVEFLQTYGKVQSISNPKVLTLNNQPAIISVGSVLRYSQN 360
Query: 299 SS----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT------EVSEPVIG 342
++ + + + G++L TP+ + G+I L+I ++S
Sbjct: 361 TTYQTTTQGTSVQNNSQAFPSVFAGILLDVTPS-IKDGKIILKINPSITKTKDISIENQT 419
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ P+ ++ + V+L G IVL GL+ Q IP+L IP + F +
Sbjct: 420 IALNAPPNLSTKQLSSLVQLKDGEQIVLGGLIDKTEGQTTRKIPILGDIPFVKYFFSYKQ 479
Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430
+E E+ I P +V+ A + P
Sbjct: 480 NIKETQEMVIIIAPHIVRLDANETAASP 507
>gi|310923243|emb|CBW54709.1| YscC, T3SS outer membrane ring component, local similarity to
E.coli GspD (T2SS) and to iron transporters,PMID 9427408
[Yersinia enterocolitica (type O:8)]
Length = 607
Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 113/324 (34%), Gaps = 20/324 (6%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
E + L+R ++D+ I+ V + + Q + RA + S
Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQARVEADPSLNAII 257
Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S +++ L++ + ++V +I ++ D L ++G + + +
Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317
Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G S G S+ ++ LE + + ++ PTL A
Sbjct: 318 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAG 346
+ K + YG +L TP VL+ G I L + E +
Sbjct: 378 SETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435
Query: 347 -DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P+ DT + G ++++ G+ +D++ +PLL IP LGALFR
Sbjct: 436 EGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495
Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
T P ++ L+
Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519
>gi|222099578|ref|YP_002534146.1| ComE protein [Thermotoga neapolitana DSM 4359]
gi|221571968|gb|ACM22780.1| ComE protein [Thermotoga neapolitana DSM 4359]
Length = 1282
Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats.
Identities = 67/346 (19%), Positives = 131/346 (37%), Gaps = 37/346 (10%)
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFIADSNIR 137
+ + S YLF G V ++ + + I + ++ + +
Sbjct: 971 LDLVSQNYGYLFDLKNG---VYVVSRPKQDLAKRYFYDIPHNFDQIKALIE--FYGGTVY 1025
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
V+ +++ +V+ G+ TI +++ L QV
Sbjct: 1026 VDSLNNFMVVTGISETI-----------------------KKELDRIVENLK-KPTKQVE 1061
Query: 198 LKVTIAEVRRDI--LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ I + K++G Q S TG S + + ++ + +
Sbjct: 1062 ISAKIVDKSLIDMVTKEMGLQLSGTGVDLSSSGASISFSVTDYLDFEKVIN---EILNSP 1118
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
+ T LA P + SG+ A G + Y T ++ G V + G+
Sbjct: 1119 LSLQFSDQKSNTLDDILASPRIVTTSGKEAKILIGDRIPYVTDTNGDGTPEVQFLETGIE 1178
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
L TP V S I L + + SEP +N ++P R R+A T + + + TIV+ GL++
Sbjct: 1179 LSITPFVRSDDTIELDLFVKASEPGNYIN--EVPGERTREATTHLIVKNNSTIVIGGLIR 1236
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ + +P +P++G FR ++E+ ++ I T +V+P
Sbjct: 1237 EVTNMSESKLPFFGDLPVIGQFFRTKSESKEKRDLMIFVTVRVVEP 1282
>gi|240141999|ref|YP_002966509.1| putative General secretion protein D [Methylobacterium extorquens
AM1]
gi|240011943|gb|ACS43168.1| putative General secretion protein D [Methylobacterium extorquens
AM1]
Length = 693
Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats.
Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 13/239 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-----EGGDFSV 247
QV ++ TIAEVR + + G + G S + FG S G+ ++
Sbjct: 424 PTQVLIEATIAEVRLNEALRHGVRWYFQAGGLGQGASMGSGFGTSGRSVTGQGSAGEIAL 483
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305
L + + + ALE T + ++ P LT + Q+A+ G Q T S+ +
Sbjct: 484 TYSLGLANAKLAISALESVTDVEIVSSPALTVLDNQTATLKVGEQVPIATRSARSVVNAD 543
Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTT 359
+ D GV+L TP V + G + L I+ E S+ V + D P+ R+R+ +T
Sbjct: 544 APLVNDIEMKDTGVILQVTPRVNAGGLVMLDIKQEASDVVPTTTSNLDSPTIRLRQITST 603
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ + SG IVL G+++ + G+P L IP+LG N ++ TE+ I P +
Sbjct: 604 IAVKSGAEIVLGGIIQRGRHRGAGGVPFLRDIPLLGTALNNIDSGQDRTELVIIIRPTV 662
>gi|297538460|ref|YP_003674229.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
gi|297257807|gb|ADI29652.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
Length = 589
Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats.
Identities = 67/388 (17%), Positives = 116/388 (29%), Gaps = 56/388 (14%)
Query: 88 YLFGKNVGQ--ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD-- 143
Y+ G+ G V R + S+I +D
Sbjct: 164 YIVGQRKGSSDTRVTSGSVSDGSSSGQSTGSTTTTNSSGSANRASMISSSIATTTNNDFW 223
Query: 144 ---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
T L+G+V R V ++ + + + + L+ + E QV L+
Sbjct: 224 KDLTDSLNGIVGNENGH-RVVVNVQSGVIMVRAMPAEVRNVEAFLRLMQVTIERQVILEA 282
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSK--------------------------SFAADF 234
I V+ + Q G S+ G S + S
Sbjct: 283 KIMNVQLNDQSQSGVNWSVFGKSGSNTGIVGNLNAKTTLGRAGNGDVTSGDLSASSGNVI 342
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
+ G L +F +L LE ++ L+ P + I+ Q A G
Sbjct: 343 ANTATTALGGPLFAVALQGANFAALLSFLETQGDVQVLSSPRIATINNQKAVLKVGTDEF 402
Query: 295 YKTVSSST-----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
+ T SS ++ G+ L TP + I L + +S+
Sbjct: 403 FVTGISSNTTASTGATTTSPEVTLQPFFSGIALDVTPQIDKDDNIILHMHPSISQVTTVN 462
Query: 344 NAGDMPSY-----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
++ V + D+ V G I + GL+ + K +P L I
Sbjct: 463 KQLNLGGVSGNINLPLASSNVSETDSIVRTHDGRVIAIGGLMTESSISNKSKVPGLGDIK 522
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
+G FR +TE+ I +V+
Sbjct: 523 GVGNAFRQKGSTSSKTELVILLKATVVQ 550
>gi|282848997|ref|ZP_06258386.1| bacterial type II and III secretion system protein [Veillonella
parvula ATCC 17745]
gi|282581272|gb|EFB86666.1| bacterial type II and III secretion system protein [Veillonella
parvula ATCC 17745]
Length = 440
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 64/275 (23%), Positives = 116/275 (42%), Gaps = 9/275 (3%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L +V T+ + + LSE + ++ ++ QV L+ TI +
Sbjct: 173 LKNVVGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLVRAID-KEPKQVQLEATIIAME 231
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ K+ GF+ S D + + + G +F + L +E +
Sbjct: 232 QSYAKEQGFRWS-----WLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPELSLMESS 286
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324
+A+P++ AI+G++A G + S G + G+ L++TP + +
Sbjct: 287 GKAVLIAKPSIMAINGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 346
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ +I EVS P I V+ R+A T V L G +V+ GL+ + Q +
Sbjct: 347 DDGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 405
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
IP+L IP+LG LFR+SR ++ E+ + +V
Sbjct: 406 IPILGDIPLLGKLFRHSRKTKDSIEMLMLVRATVV 440
>gi|218294935|ref|ZP_03495789.1| type II and III secretion system protein [Thermus aquaticus
Y51MC23]
gi|218244843|gb|EED11367.1| type II and III secretion system protein [Thermus aquaticus
Y51MC23]
Length = 751
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 11/278 (3%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G + V T + + ++ L+ A QV L+V I EV+ +
Sbjct: 483 GQSGNPTPTATVVADERTNTLIVTGTAEDLALVEGLIPRLDQAVP-QVNLRVRIQEVQSN 541
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
+ + +G + + + + + F S L + L AL+R
Sbjct: 542 LTRSLGLKWNTIAGGNVVASILDSGLSLIFDS-------TRSLAALNIVATLDALQRQGL 594
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
R L + T +S Q+A SG L + V + D G+++ TP + + G+I
Sbjct: 595 SRALRDVNQTVLSNQTARLQSGETFLIRRVVENRVERV--PFDIGIIVEVTPQITADGQI 652
Query: 329 GLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
L I+ EVS V GD+ + + TT+ + G T+VL GL + Q +G+P+
Sbjct: 653 LLNIRAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVRDGQTVVLGGLTSQENTQTVQGVPI 712
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
L IP++G LF+ + E+ + T ++K A R
Sbjct: 713 LMDIPLIGELFKQRTGETTDRELLVVITADILKETAER 750
>gi|294627648|ref|ZP_06706230.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292598000|gb|EFF42155.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 668
Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats.
Identities = 73/413 (17%), Positives = 145/413 (35%), Gaps = 44/413 (10%)
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
DP VV + + + G +V+ L +Q+L + + E +
Sbjct: 212 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQD 271
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ + V + + V + + + V+ L++
Sbjct: 272 TRTNAVDVAAATGAAQAQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 331
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246
+QV ++ + E+ K++G Q + G + ++ A G ++ +
Sbjct: 332 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGT 390
Query: 247 VKGV-------------------------------LDRFSFETVLHALERATAIRTLAEP 275
G + F ++ A++ T L+ P
Sbjct: 391 RSGNAEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 450
Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
++ + + A G + T + ++ D GV L P + + G I L
Sbjct: 451 SIMTLDNEQARILVGQEVPITTGEVLGAANDNLFRTIQRQDVGVELEVRPQINTAGGITL 510
Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
I+ EVS V+A + R+ +T V + +G + L GLL + +Q E +PLL
Sbjct: 511 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 570
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
+P LGALFR+ NR++T + + P +++ A Y+ D +
Sbjct: 571 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRD-AADAQRMTAPRYNDLRDRQL 622
>gi|10955572|ref|NP_052413.1| secretin YscC [Yersinia enterocolitica]
gi|332163594|ref|YP_004424936.1| putative type III secretion protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|267564|sp|Q01244|YSCC_YEREN RecName: Full=Yop proteins translocation protein C; Flags:
Precursor
gi|155552|gb|AAC37020.1| yscC [Yersinia enterocolitica]
gi|4324359|gb|AAD16836.1| secretin YscC [Yersinia enterocolitica W22703]
gi|318608189|emb|CBY78163.1| type III secretion outermembrane pore forming protein
(YscC,MxiD,HrcC, InvG) [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667824|gb|ADZ44467.1| putative type III secretion protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 607
Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats.
Identities = 58/324 (17%), Positives = 113/324 (34%), Gaps = 20/324 (6%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
E + L+R ++D+ I+ V + + Q + RA + S
Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQARVEADPSLNAII 257
Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S +++ L++ + ++V +I ++ D L ++G + + +
Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317
Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G S G S+ ++ LE + + ++ PTL A
Sbjct: 318 KTTGDQSNIASNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAG 346
+ K + YG +L TP VL+ G I L + E +
Sbjct: 378 SETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435
Query: 347 -DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P+ DT + G ++++ G+ +D++ +PLL IP +GALFR
Sbjct: 436 EGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELT 495
Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
T P ++ L+
Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519
>gi|166713403|ref|ZP_02244610.1| general secretion pathway protein D [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 766
Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats.
Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 32/304 (10%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ET + +S + V+ L++ QV ++ +AEV Q G
Sbjct: 449 VSAVAETNTLLVRSTPQSWASIRDVIEKLDV-MPMQVHIEAQVAEVNLTGQLQYGVNWYF 507
Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268
+ + P + + G + V + ++ AL++ T
Sbjct: 508 ENAVTTPFDANDNGGPALPSAAGRNIWGDIAGSVTNTGVGWTFLGKNAAAIISALDQVTN 567
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322
+R L P++ + A+ G + + S +TG +SV D GV+L P V
Sbjct: 568 LRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRV 627
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370
G + L I E+S P +A + R+ T + SG TI+L
Sbjct: 628 TKDGMVFLDIVQEISTPGARPDACTAATTTTVNSAACNVDINTRRVKTEAAVQSGDTIML 687
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGL+ D G+P+LSK+P++GALF + E+ + TP +V+ ++
Sbjct: 688 AGLIDDSTTDGSSGVPMLSKLPVVGALFGRKTRDTRRREVIVLITPSIVR--NPQEARNL 745
Query: 431 DDHY 434
D Y
Sbjct: 746 TDEY 749
>gi|148259896|ref|YP_001234023.1| general secretion pathway protein D [Acidiphilium cryptum JF-5]
gi|146401577|gb|ABQ30104.1| general secretion pathway protein D [Acidiphilium cryptum JF-5]
Length = 756
Score = 156 bits (395), Expect = 7e-36, Method: Composition-based stats.
Identities = 69/305 (22%), Positives = 122/305 (40%), Gaps = 21/305 (6%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ N+S + ++ L+I +V + TIAEV + + G Q S
Sbjct: 456 ADASENASVEAMLRKLDI-EPLEVEIDATIAEVDLNGALKYGTQFFFKSGGINAVLSTGT 514
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
G + G + AL+ T ++ L+ P L +G++A+ G
Sbjct: 515 TAALNQSFPGFVLAGHGADGAP---LAISALQSVTQVQVLSSPQLLVQNGRTANLLVGNL 571
Query: 293 HLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV 343
Y + +S + T+ V + GV+L TP + S G + L + +VS P +
Sbjct: 572 VPYLSQTSQSTLTTGAPVINSVNYQETGVILQITPHISSDGLVALTVSQQVSNVAPSVTT 631
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+ P++ R ++V + G TI LAGL+ D++Q+ G+P L +P+LG LF
Sbjct: 632 QGLNSPTFSERAVSSSVVVHDGQTIGLAGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDN 691
Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
+R E+ + TP +V D ++ D + N N
Sbjct: 692 SRARQELLVLITPHVVHDA--------TDAAALTSDLEQALPNAANVPAELNGLPMDGSA 743
Query: 464 NYKGA 468
+ + A
Sbjct: 744 DPQAA 748
>gi|194364334|ref|YP_002026944.1| general secretion pathway protein D [Stenotrophomonas maltophilia
R551-3]
gi|194347138|gb|ACF50261.1| general secretion pathway protein D [Stenotrophomonas maltophilia
R551-3]
Length = 733
Score = 156 bits (395), Expect = 7e-36, Method: Composition-based stats.
Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 23/260 (8%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----------A 231
+V+ L++ QV ++ +AEV + + G + +G + +
Sbjct: 446 EVIEKLDV-MPLQVHIEAQVAEVALEGDLKYGVNWFFDNAVAGRALTGALAGVTLPAAAG 504
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
+ + G + + V+ AL++ T +R L P++ + A+ G
Sbjct: 505 GSWSSLAGAATGGEGLGWAFTGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGD 564
Query: 292 QHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----- 341
+ T + +TG +SV D GV+L P V G + L I EVS
Sbjct: 565 KVPINTTTVNTGIGTSSYSSVQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASNVPENC 624
Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
P +K T + SG TI+LAGL+ D GIP LS+IP++GALF
Sbjct: 625 NPQERNCNPRISTKKLSTEAAVQSGDTIMLAGLITDTGTDGSSGIPGLSRIPVVGALFGQ 684
Query: 401 SRFNREETEIFIAATPFLVK 420
+E+ + TP +V+
Sbjct: 685 KSRTSRRSEVIVLLTPSIVR 704
>gi|90020782|ref|YP_526609.1| MSHA biogenesis protein MshL [Saccharophagus degradans 2-40]
gi|89950382|gb|ABD80397.1| type II and III secretion system protein [Saccharophagus degradans
2-40]
Length = 543
Score = 156 bits (395), Expect = 7e-36, Method: Composition-based stats.
Identities = 62/299 (20%), Positives = 113/299 (37%), Gaps = 23/299 (7%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
+ L +V + + V + L S+ ++ ++ ++ QV L+ I
Sbjct: 219 KLTLSAIVGGEANGRNVVVNPQAGLVVVRALPSEISAVREFLDRSELSVRRQVILETKIV 278
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKS---FAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
EV+ + Q G + +K+ F SE + +L
Sbjct: 279 EVKLNDGFQAGVNWNEIRGQMLLTKNVETFDVPVDIVSASENVGEIFSSIFRIGDISQLL 338
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----------SSSTGATSVTT 309
LE ++ L+ P ++ ++ Q A G + T ++S +T+
Sbjct: 339 SLLETQGNVQVLSSPRVSTVNNQKAVIRVGSDEFFVTGISSQTTSTAASTTSAPNIELTS 398
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTV 360
G+ L TP + G + L + VSE + + + VR++D+ V
Sbjct: 399 FFSGISLDVTPQIADNGDVILHVHPIVSEVTDQNKDITLGNEKFSLPLALREVRESDSIV 458
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
SG IVL GL+K+ + + P L +P+L LFR E+TE+ I P +V
Sbjct: 459 RAQSGQIIVLGGLMKEKLNDVYSKRPGLGDVPVLNTLFRKRSKVSEKTELVILLRPIVV 517
>gi|308095101|ref|ZP_05903504.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
parahaemolyticus Peru-466]
gi|308085930|gb|EFO35625.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
parahaemolyticus Peru-466]
Length = 624
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%)
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
V V + V+T + E ++ + + A ++ +N + +
Sbjct: 219 VGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 278
Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236
Q ++V +I ++ + L+Q+G G++ D
Sbjct: 279 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDIKTTGDVDN 338
Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
V+ G S K +LD + + LE + + ++ PTL A +
Sbjct: 339 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 398
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348
K V T A + YG +L P ++ I L + E + D+
Sbjct: 399 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 456
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
PS R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T
Sbjct: 457 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 516
Query: 409 EIFIAATPFLV 419
P +V
Sbjct: 517 VRMFIIEPRIV 527
>gi|329890282|ref|ZP_08268625.1| general secretion pathway protein D [Brevundimonas diminuta ATCC
11568]
gi|328845583|gb|EGF95147.1| general secretion pathway protein D [Brevundimonas diminuta ATCC
11568]
Length = 698
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 53/314 (16%), Positives = 102/314 (32%), Gaps = 39/314 (12%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
V + +V+ L++ QV ++ + E+
Sbjct: 319 TVTATGQRATIARFPGANALVISGPADLQRTLTEVIRQLDVR-RQQVLIEAIVVELSDKA 377
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV------------------- 250
++ +G Q + G + +D V G + +
Sbjct: 378 VRDLGVQW-LMAGEQGVGLTNYSDRAAPLVPIAGGAAAGQLDKDDPLRERLQNLALNSLL 436
Query: 251 ------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
F +++A + L P++ + + A+F G + T
Sbjct: 437 GANGFVGGAGGKWGDGLFGFIINAAKTDAGSNLLQTPSIMTLDNEEATFLVGQEVPITTG 496
Query: 299 S-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYR 352
+S T+ D GV L P + + G I L ++ EVS + +
Sbjct: 497 QTILDGNSNPFTTTERKDIGVRLTVRPQINAGGSITLTLRQEVSSINGLLTSGANDLILD 556
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R+ +TT+ + G V GLL + +P L IP +G LFR++ R T + +
Sbjct: 557 KRELETTLVVDDGDIAVAGGLLDQNDGLETSKVPGLGDIPGVGVLFRSTSRERGRTNLMV 616
Query: 413 AATPFLVKPVAMRD 426
P +++ A
Sbjct: 617 FLRPTILRTTADAQ 630
>gi|313199856|ref|YP_004038514.1| pilus (msha type) biogenesis protein mshl [Methylovorus sp. MP688]
gi|312439172|gb|ADQ83278.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. MP688]
Length = 603
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 61/292 (20%), Positives = 116/292 (39%), Gaps = 28/292 (9%)
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
+ + ET + + ++ ++ + + QV ++ +I EV + Q G
Sbjct: 282 AATVIASPETGVISVRATSRQHEKVQEFLDKVMASARRQVLIEASIVEVTLNDTYQAGID 341
Query: 217 HSITGSSSGPSKSFAAD----FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
+ G + S G + G L L++ + L
Sbjct: 342 WTRLGGGFNINGSLGTTGIVSPSGVAAAAGSVSPFVVGYSSNDISLGLRLLQQFGNTKVL 401
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSS-------------STGATSVTTHDYGVVLHFT 319
+ P L ++ Q+A +Y T+ S + T+ T GVV+ T
Sbjct: 402 SSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTTPNTVPVGVVMSVT 461
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPSGGTI 368
P + G++ + ++ +S V VN + +P +VR+ ++ + + SG T
Sbjct: 462 PQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRELESVLRVNSGNTA 521
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
VL GL++D+IQQ + +P +SKIP G LF +TE+ I P +++
Sbjct: 522 VLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLRPIVIQ 573
>gi|308094808|ref|ZP_05891872.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
parahaemolyticus AN-5034]
gi|308093421|gb|EFO43116.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
parahaemolyticus AN-5034]
Length = 628
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%)
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
V V + V+T + E ++ + + A ++ +N + +
Sbjct: 223 VGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 282
Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236
Q ++V +I ++ + L+Q+G G++ D
Sbjct: 283 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDIKTTGDVDN 342
Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
V+ G S K +LD + + LE + + ++ PTL A +
Sbjct: 343 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 402
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348
K V T A + YG +L P ++ I L + E + D+
Sbjct: 403 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 460
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
PS R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T
Sbjct: 461 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 520
Query: 409 EIFIAATPFLV 419
P +V
Sbjct: 521 VRMFIIEPRIV 531
>gi|146338379|ref|YP_001203427.1| putative general secretion pathway protein D [Bradyrhizobium sp.
ORS278]
gi|146191185|emb|CAL75190.1| Putative general secretion pathway protein D [Bradyrhizobium sp.
ORS278]
Length = 780
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 70/353 (19%), Positives = 124/353 (35%), Gaps = 36/353 (10%)
Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMV 151
G G N+ ++ R + + S R ++ G+
Sbjct: 404 AAGTTASTGF--SGASQANIGVVANRGFNGTPPPTQVGLDGGSEARASSAGGKPLMDGVR 461
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
T + + + + QV + TIAEV +
Sbjct: 462 ITPDVVNNTLLIYADRENYRIIEATLRQCD---------RPQLQVAIDATIAEVTLNDNL 512
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--------------- 256
G Q +T + G + S + +F
Sbjct: 513 TYGVQAYLTSKNLGLRPDQGSLLNTTSTSAPATVASAAGTITNAFLSRAFPGFNFLIGSE 572
Query: 257 ---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSV 307
+L AL T ++ L+ P+L I Q+A+ G Q T S++ T ++
Sbjct: 573 SQPSAILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVVNTI 632
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ G++L P V G + L I+ E+S P+ RK ++V + SG T
Sbjct: 633 DYRNTGIILRVAPRVNENGNVRLEIEQEISNVSPQTANSLTPTVAQRKVKSSVAVASGQT 692
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++LAGL+ + Q + G+P + +IP G LF N+ +R TE+ I P +++
Sbjct: 693 VLLAGLISETHQGTRTGLPGVDQIPGFGDLFSNNDRSRGRTELIIFIRPQIIR 745
>gi|218886129|ref|YP_002435450.1| type II and III secretion system protein [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|218757083|gb|ACL07982.1| type II and III secretion system protein [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 552
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 56/267 (20%), Positives = 100/267 (37%), Gaps = 42/267 (15%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITG------------------------------- 221
Q+ LK I E ++ +++G Q
Sbjct: 253 RAQIQLKAHIVEATKETARELGIQWGGVNRVGNMAGSNDLWVTPGGTGGTAGTSPYNGSY 312
Query: 222 ---------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
S G +F D GK + G + E L AL+ ++ I L
Sbjct: 313 TPIFGAPGISGQGNGINFPIDTTGKSGAGSLGLMF-GTIGGNMLEMQLSALQESSKINIL 371
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ P+++ + Q A +G + Y + ++ G V D + L TP V+ + L++
Sbjct: 372 SSPSISTLDNQMAYTENGEKVPYVST-NAQGDREVKFEDAVLRLEITPHVIDDKNLKLKV 430
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ E + P ++ +TT+ + G TIV++GL KD + G+P L +
Sbjct: 431 LVKKDEVDLTRTVEGNPFIIKKQTETTLIVQDGETIVISGLTKDRKSTGRSGVPGLHDVE 490
Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
LG LF + + E+ I TP ++
Sbjct: 491 GLGWLFGSDSKASKLEEVLIFITPAVL 517
>gi|326403170|ref|YP_004283251.1| type II secretory pathway protein D [Acidiphilium multivorum
AIU301]
gi|325050031|dbj|BAJ80369.1| type II secretory pathway protein D [Acidiphilium multivorum
AIU301]
Length = 758
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 69/305 (22%), Positives = 122/305 (40%), Gaps = 21/305 (6%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ N+S + ++ L+I +V + TIAEV + + G Q S
Sbjct: 458 ADASENASVEAMLRKLDI-EPLEVEIDATIAEVDLNGALKYGTQFFFKSGGINAVLSTGT 516
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
G + G + AL+ T ++ L+ P L +G++A+ G
Sbjct: 517 TAALNQSFPGFVLAGHGSDGAP---LAISALQSVTQVQVLSSPQLLVQNGRTANLLVGNL 573
Query: 293 HLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV 343
Y + +S + T+ V + GV+L TP + S G + L + +VS P +
Sbjct: 574 VPYLSQTSQSTLTTGAPVINSVNYQETGVILQITPHISSDGLVALTVSQQVSNVAPSVTT 633
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+ P++ R ++V + G TI LAGL+ D++Q+ G+P L +P+LG LF
Sbjct: 634 QGLNSPTFSERAVSSSVVVHDGQTIGLAGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDN 693
Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
+R E+ + TP +V D ++ D + N N
Sbjct: 694 SRARQELLVLITPHVVHDA--------TDAAALTSDLEQALPNAANVPAELNGLPMDGSA 745
Query: 464 NYKGA 468
+ + A
Sbjct: 746 DPQAA 750
>gi|28373014|ref|NP_783687.1| hypothetical protein pYVa12790_p34 [Yersinia enterocolitica]
gi|32470300|ref|NP_863535.1| hypothetical protein pYVe8081_p30 [Yersinia enterocolitica]
gi|122815824|ref|YP_001004090.1| putative type III secretion protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|14579358|gb|AAK69235.1|AF336309_30 YscC [Yersinia enterocolitica]
gi|23630586|gb|AAN37542.1| YscC [Yersinia enterocolitica]
gi|121663698|emb|CAL10060.1| putative type III secretion protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 607
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 113/324 (34%), Gaps = 20/324 (6%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
E + L+R ++D+ I+ V + + Q + RA + S
Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQVATRASAQARVEADPSLNAII 257
Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S +++ L++ + ++V +I ++ D L ++G + + +
Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317
Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G S G S+ ++ LE + + ++ PTL A
Sbjct: 318 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAG 346
+ K + YG +L TP VL+ G I L + E +
Sbjct: 378 SETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435
Query: 347 -DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P+ DT + G ++++ G+ +D++ +PLL IP LGALFR
Sbjct: 436 EGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495
Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
T P ++ L+
Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519
>gi|253997792|ref|YP_003049855.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4]
gi|253984471|gb|ACT49328.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4]
Length = 604
Score = 156 bits (394), Expect = 8e-36, Method: Composition-based stats.
Identities = 61/292 (20%), Positives = 116/292 (39%), Gaps = 28/292 (9%)
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
+ + ET + + ++ ++ + + QV ++ +I EV + Q G
Sbjct: 283 AATVIASPETGVISVRATSRQHEKVQEFLDKVMASARRQVLIEASIVEVTLNDTYQAGID 342
Query: 217 HSITGSSSGPSKSFAAD----FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
+ G + S G + G L L++ + L
Sbjct: 343 WTRLGGGFNINGSLGTTGIVSPSGVAAAAGSVSPFVVGYSSNDISLGLRLLQQFGNTKVL 402
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSS-------------STGATSVTTHDYGVVLHFT 319
+ P L ++ Q+A +Y T+ S + T+ T GVV+ T
Sbjct: 403 SSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTTPNTVPVGVVMSVT 462
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPSGGTI 368
P + G++ + ++ +S V VN + +P +VR+ ++ + + SG T
Sbjct: 463 PQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRELESVLRVNSGNTA 522
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
VL GL++D+IQQ + +P +SKIP G LF +TE+ I P +++
Sbjct: 523 VLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLRPIVIQ 574
>gi|194367008|ref|YP_002029618.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3]
gi|194349812|gb|ACF52935.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3]
Length = 657
Score = 156 bits (394), Expect = 8e-36, Method: Composition-based stats.
Identities = 51/315 (16%), Positives = 112/315 (35%), Gaps = 56/315 (17%)
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + ++ L+N+ DQV ++ I +++G + I
Sbjct: 338 RIVADERTNTLMISDIPKKIARMRELINVIDRPVDQVLIESRIVIATDTFARELGAKFGI 397
Query: 220 TGSSSG-----------------------------------------------PSKSFAA 232
+GS ++
Sbjct: 398 SGSRDNVYFSGNLEANRLTRESQVKTAQDNAKAERDWIAGGRVGPPPVATGSTITRGLNW 457
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
S G ++ + + + L A++ + ++ P + + + A+ G +
Sbjct: 458 SLPVATASNPGSLALSILNAGYLLDVELSAMQEESRGEVISNPRVVTTNQREATIKQGKE 517
Query: 293 HLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNA 345
Y T+S +V + + L TPT+ + R+ L +Q EV + +
Sbjct: 518 IGYVTISGGGTGGVATPNVQFKEVVLELKVTPTITNDNRVFLNMQVKKDEVDQLIQLDGY 577
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
G +PS R+ +T V + G T+V+ G+ + + +P L +P LG LF+ N+
Sbjct: 578 GTVPSINRREVNTAVLVEDGQTVVIGGVYEFTDRSSISKVPFLGDVPFLGNLFKKRGRNK 637
Query: 406 EETEIFIAATPFLVK 420
++ E+ + TP +++
Sbjct: 638 DKAELLVFVTPKVLR 652
>gi|91776807|ref|YP_546563.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
gi|91710794|gb|ABE50722.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
Length = 723
Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 3/200 (1%)
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
G S ++ + FS+ + F L ALE + ++ P +T
Sbjct: 521 GVSPDGAQDLNVNLPVANAFGNFAFSLFRLPAGFLLNLELSALETDQRGKIVSSPRVTTA 580
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
+ Q A G Q ++ +SS GAT+V + + L TP + +I + + EV +
Sbjct: 581 NQQKAIIEQGTQIPFQQATSS-GATAVQFKNASLSLEVTPQITPDEKIIMDL--EVKKDK 637
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+GV ++PS ++ T V + +G T VL G+ + + + +P +P LG +F+
Sbjct: 638 VGVVFNNVPSIDTQRVQTQVLVANGETAVLGGIYEQTERNDVDKVPFFGDLPFLGNVFKR 697
Query: 401 SRFNREETEIFIAATPFLVK 420
++TE+ I TP ++
Sbjct: 698 RVKQSDKTELLIFITPKVMD 717
>gi|28898470|ref|NP_798075.1| putative type III secretion protein YscC [Vibrio parahaemolyticus
RIMD 2210633]
gi|28806688|dbj|BAC59959.1| putative type III secretion protein YscC [Vibrio parahaemolyticus
RIMD 2210633]
Length = 632
Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%)
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
V V + V+T + E ++ + + A ++ +N + +
Sbjct: 227 VGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 286
Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236
Q ++V +I ++ + L+Q+G G++ D
Sbjct: 287 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDIKTTGDVDN 346
Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
V+ G S K +LD + + LE + + ++ PTL A +
Sbjct: 347 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 406
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348
K V T A + YG +L P ++ I L + E + D+
Sbjct: 407 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 464
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
PS R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T
Sbjct: 465 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 524
Query: 409 EIFIAATPFLV 419
P +V
Sbjct: 525 VRMFIIEPRIV 535
>gi|325915066|ref|ZP_08177395.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC
35937]
gi|325538764|gb|EGD10431.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC
35937]
Length = 680
Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 62/317 (19%), Positives = 117/317 (36%), Gaps = 42/317 (13%)
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
V + + + V+ L++ +QV ++ + E+
Sbjct: 305 APAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV-HREQVLVEAIVVEISDTAA 363
Query: 211 KQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255
K++G Q + G + ++ A G ++ + G D S
Sbjct: 364 KRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAASGTRSGNDDDDSVLEQARNVAAQ 423
Query: 256 --------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
F ++ A++ T L+ P++ + + A G +
Sbjct: 424 SLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVGQEVPI 483
Query: 296 KTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMP 349
T + ++ D GV L P + + G I L I+ EVS V+A
Sbjct: 484 TTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSEL 543
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ R+ +T V + +G + L GLL + +Q E +PLL +P LGALFR+ NR++T
Sbjct: 544 VFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTN 603
Query: 410 IFIAATPFLVKPVAMRD 426
+ + P +++ A
Sbjct: 604 LMVFIRPTIIRDAADAQ 620
>gi|268679665|ref|YP_003304096.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum
deleyianum DSM 6946]
gi|268617696|gb|ACZ12061.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum
deleyianum DSM 6946]
Length = 506
Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 66/320 (20%), Positives = 115/320 (35%), Gaps = 34/320 (10%)
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRR 207
V T + +A + +V + LL QV + V+I V
Sbjct: 183 VNTGAEGYKAQAPIINANAGIITVTGTKKQLDRVSEYIELLKERLHKQVLIDVSIISVAL 242
Query: 208 DILKQIGFQHSITGSSSGPSKSF-----------AADFGGKFVSEGGDFSVKGVLDRFSF 256
D + G S + F + + +S + V++ F
Sbjct: 243 DSSNKTGIDWSKFQLGFNSTSMFNNNNDNANMYHTSPYSEVGLSGTPILNNLTVVNDAVF 302
Query: 257 ET--VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------V 307
++ L + + ++ P + ++ Q A T G Y+ + AT+ V
Sbjct: 303 SVSGLIDFLGSSGDAKVVSSPKVLTMNNQQALITVGDNINYRIPEETDAATTSGTATLSV 362
Query: 308 TTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKA 356
T +Y GV+L+ TP + I LRI VS + P + +K
Sbjct: 363 TYMNYSIFIGVLLNITPEISEDNEIILRINPSVSSFKYTDDDQKTTEPREIAPDTQEKKL 422
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T V++ G TI+L GL+ + +PLLS IP+LG F++S + E+ TP
Sbjct: 423 STVVKVKDGSTIILGGLIASEKGHENSSVPLLSSIPLLGEAFKHSEETLKTKELVFVITP 482
Query: 417 FLVKPVAMRDLSRPDDHYSV 436
++ + D +S
Sbjct: 483 RIIGAKGTDKATLKDLGFSQ 502
>gi|153836207|ref|ZP_01988874.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
parahaemolyticus AQ3810]
gi|308126333|ref|ZP_05909374.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
parahaemolyticus AQ4037]
gi|149750482|gb|EDM61227.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
parahaemolyticus AQ3810]
gi|308110700|gb|EFO48240.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
parahaemolyticus AQ4037]
Length = 624
Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%)
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
V V + V+T + E ++ + + A ++ +N + +
Sbjct: 219 VGGVQTQITDSASVQTSPVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 278
Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236
Q ++V +I ++ + L+Q+G G++ D
Sbjct: 279 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIIDIKTTGDVDN 338
Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
V+ G S K +LD + + LE + + ++ PTL A +
Sbjct: 339 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 398
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348
K V T A + YG +L P ++ I L + E + D+
Sbjct: 399 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 456
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
PS R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T
Sbjct: 457 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 516
Query: 409 EIFIAATPFLV 419
P +V
Sbjct: 517 VRMFIIEPRIV 527
>gi|190575670|ref|YP_001973515.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia
K279a]
gi|190013592|emb|CAQ47227.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia
K279a]
Length = 655
Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 50/314 (15%), Positives = 112/314 (35%), Gaps = 55/314 (17%)
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + ++ L+N+ DQV ++ I +++G + I
Sbjct: 337 RIVADERTNTLMISDIPKKIARMRELINVIDRPVDQVLIESRIVIATDTFARELGARFGI 396
Query: 220 TGSSSGP-----------------------------------------------SKSFAA 232
+GS ++
Sbjct: 397 SGSRDNAYFSGNLEANEATRKSQVEANATNAKAYRDWLAGGSTGPAPVPVGSAITRGLNW 456
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ G ++ + + + L A++ + ++ P + + + A G +
Sbjct: 457 AMPAASTNPAGSLALSILNAGYLLDVELSAMQEESRGEVISNPRVVTTNQREALIKQGKE 516
Query: 293 HLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAG 346
Y T+S+ G +V + + L TPT+ + R+ L +Q EV + G
Sbjct: 517 IGYVTISAGAGGVATPNVQFKEVVLELKVTPTITNDNRVFLNMQVKKDEVDRLIQLEGYG 576
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+PS R+ +T V + G T+V+ G+ + + +P L +P LG LF+ +++
Sbjct: 577 TVPSINRREVNTAVLVEDGQTVVIGGVYEFTDRNSISKVPFLGDVPFLGNLFKKRGRSKD 636
Query: 407 ETEIFIAATPFLVK 420
+ E+ + TP +++
Sbjct: 637 KAELLVFVTPKVLR 650
>gi|289547821|ref|YP_003472809.1| type II and III secretion system protein [Thermocrinis albus DSM
14484]
gi|289181438|gb|ADC88682.1| type II and III secretion system protein [Thermocrinis albus DSM
14484]
Length = 575
Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 29/251 (11%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHS----------ITGSSSGPSKSFAADF----------- 234
V+++ I E+R + L+++G + G + +
Sbjct: 325 VSIEARIVEIREEALRELGINWNMLLSSARLPEAWSGGVGSNIGIGSPPTPGNLFLTPPY 384
Query: 235 --GGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + GG ++ + + ALER ++LA+PT+ AI+GQ A+ G
Sbjct: 385 LQPGLSPNPGGILTLTYQKGIINALNLRISALERVNLAKSLAKPTIVAINGQKATIKQGV 444
Query: 292 QHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
Q Y + T ++ D + L TP V GRI L + ++ +GV
Sbjct: 445 QVPYLTAAVGAGGTAVPNIQFKDVVLQLDVTPIVSPDGRILLDLS--LTRDTLGVQTPQG 502
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P+ ++ T V + +G T+V+ G++ + EGIP ++P+L LF R N+ +T
Sbjct: 503 PAINKKEVRTKVIVENGQTLVIGGVIDNQSYTTNEGIPGFVRVPLLKYLFGQERLNKSDT 562
Query: 409 EIFIAATPFLV 419
E+ I TP ++
Sbjct: 563 ELLIFITPTVL 573
>gi|302326451|gb|ADL25652.1| putative bacterial type II/III secretion system protein
[Fibrobacter succinogenes subsp. succinogenes S85]
Length = 585
Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats.
Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 36/332 (10%)
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEM--TLRRFIADSNIRVEMV--SDTVVLHGMV 151
+++ + K + ++ + + ++ + L +F+ S + V + +VL G
Sbjct: 260 SSSLWVSEEGAKALADVRVFSLKHVSPEKAMAQLSKFMKGSELNVSEYREQNALVLGGSP 319
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
R I ++ +++ + V + QVTL I E R+
Sbjct: 320 RAIARAEELLKMVD------------------VPQM-------QVTLACVIVEFRKGRSF 354
Query: 212 QIGFQHSITG--SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
IG + T DF GK +S+ G F G+L FE L ++E
Sbjct: 355 AIGVRSGATRNVGERDIQARGFFDFLGKDISKSGAFGKIGIL-PDRFELELSSMEENNEA 413
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPG 326
+ LA P +T ++G A Y S +T + G+ L TPT+ G
Sbjct: 414 KVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDYRSFNDGISLELTPTMTQDG 473
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L + E+ + R TTV L G T+ L GL++ + +++ +P
Sbjct: 474 LITLSVSPEI-KTAGRSTGDGPRDISSRNMKTTVVLRDGETLCLGGLIRKNKTEVRSAVP 532
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L IPILG LF + +E+E+ I TP +
Sbjct: 533 FLGSIPILGRLFSYTSEEEDESELAIFITPSV 564
>gi|328468919|gb|EGF39879.1| putative type III secretion protein YscC [Vibrio parahaemolyticus
10329]
Length = 628
Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats.
Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%)
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
V V + V+T + E ++ + + A ++ +N + +
Sbjct: 223 VGGVQTQITDSASVQTSPVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 282
Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236
Q ++V +I ++ + L+Q+G G++ D
Sbjct: 283 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRTGVSVGNNRIVDIKTTGDVDN 342
Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
V+ G S K +LD + + LE + + ++ PTL A +
Sbjct: 343 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 402
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348
K V T A + YG +L P ++ I L + E + D+
Sbjct: 403 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGTKIPDGGVDDL 460
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
PS R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T
Sbjct: 461 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 520
Query: 409 EIFIAATPFLV 419
P +V
Sbjct: 521 VRMFIIEPRIV 531
>gi|255322161|ref|ZP_05363307.1| type II and III secretion system protein [Campylobacter showae
RM3277]
gi|255300534|gb|EET79805.1| type II and III secretion system protein [Campylobacter showae
RM3277]
Length = 481
Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/331 (19%), Positives = 114/331 (34%), Gaps = 55/331 (16%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
+L+ +I + + L + + + + QV + V+I
Sbjct: 129 KAILNNTTESIVAPDPIIN-ANAGLVTVTGTAAQLRRVSEYIKDIQERLKKQVVIDVSII 187
Query: 204 EVRRDILKQIGFQHSITGSSS-----------------------GPSKSFAADFG----- 235
V G S P+ + + +G
Sbjct: 188 SVELANSYTKGVDWSKFNIGFKTGLYNRTVVTGVTETVGQDAAGNPTTTLSRTYGLIPAN 247
Query: 236 -------GKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
G + G S+ + F+ + VL+ LE + ++ P +T ++ Q A
Sbjct: 248 DLFWSNRGNGLGGGFSQSMNLIAGFNFNLDGVLNFLETNGRTKVVSSPKITTLNNQQALI 307
Query: 288 TSGGQHLYKTVSSS------TGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVS 337
+ G Y+ S G T++T Y G++L+ P V +I LRI +S
Sbjct: 308 SVGDNVNYRVQEESQNNNALNGKTTITYKQYSVFIGILLNILPEVSDDNKIMLRINPSLS 367
Query: 338 EP--------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
P +K T V++ SG TIVL GL+ + +P L
Sbjct: 368 SFKYNEDDVRQSTTIREIAPDTIQKKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLG 427
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+LG F++++ N TE+ TP +V
Sbjct: 428 DIPVLGHAFKSTKDNLRTTELVFIITPRIVD 458
>gi|53802350|ref|YP_112861.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath]
gi|53756111|gb|AAU90402.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath]
Length = 729
Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats.
Identities = 40/244 (16%), Positives = 87/244 (35%), Gaps = 15/244 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------GKFVSEGG 243
QV ++ + D L+++G + + ++ +S G
Sbjct: 484 RQVMIESRVVIANVDFLRELGAKLDFRPKNLTAAERLNPTGSMADLGVDLAKLTTLSPYG 543
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ + + L A ++ +A P + A G + Y+ TG
Sbjct: 544 TAQYVVSMGDYLLDLELSAAQKEGRGEIVANPRVLTADQSKAKIMQGVELPYQITQQGTG 603
Query: 304 ----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+V + L TP + I + + + + + + R+ DT
Sbjct: 604 GGIPVQNVAFKPAVLELDVTPHITPDDHILMDLMVKKDD-KGELAPNGNFAIEKREIDTV 662
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
++ +G T+VL G+ + + + +P +P +G +FR + + E+ I TP +V
Sbjct: 663 AQVANGETVVLGGVYEGTRRNNTDKVPFFGDLPGIGFMFRRNAVEDRKKELLIFITPKIV 722
Query: 420 KPVA 423
K +
Sbjct: 723 KQTS 726
>gi|307721768|ref|YP_003892908.1| type II and III secretion system protein [Sulfurimonas autotrophica
DSM 16294]
gi|306979861|gb|ADN09896.1| type II and III secretion system protein [Sulfurimonas autotrophica
DSM 16294]
Length = 565
Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats.
Identities = 71/432 (16%), Positives = 159/432 (36%), Gaps = 36/432 (8%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-----RTMYLFGKNVGQANVIL 101
I + N+ +L + ++ +++ + +V + + +FGK G ++++
Sbjct: 16 ANDILVFNNEYQVLPLQKKIKRLIIGNKETINVSLLDAVSAKGTLLKIFGKKTGNTSILV 75
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
I D + N + + ++ +++ + + + ++ +D+ V+ G+ + D +R
Sbjct: 76 IYTDNS-IQNYHVYVNENLGYIQKMINIIEPNLRLS-KVGNDSTVIAGVFKDPHDKKRIY 133
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
E+ + + + + + +N + + K+ + V K +G ++
Sbjct: 134 EILQK--GGINTEKLMDLTKTQKVNKM-------IRTKLYLIAVDNQKAKDLGGVTGLSF 184
Query: 222 SSSGPSKSFAADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ + + A G + S L+ L+ L + L
Sbjct: 185 FNKYVNATANAAAANSATFSGFLLDNLGNFTTSTGNSVLATLNFLQTKGITNILDDTVLI 244
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
++A+F GG+ T + T V +YG+ L T + + I
Sbjct: 245 TTEDKNATFRVGGELYIPTGITQNVGTAPTIQVEAKEYGLKLTLTSKFMQTNG-YMHINV 303
Query: 335 EVSEPVIGVN---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
++ + I N +PS+ + T V + S I L G L + + +E +
Sbjct: 304 DIQDSAIDANIAHNVSLGDGISIPSFVSKNIKTNVVVKSEQVIALGGRLHSENSKSEEKV 363
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
PL IPILG LF++ N T++ P +V D D Y ++
Sbjct: 364 PLFGDIPILGELFKHKIENLGTTDLIFLLVPEIVDANEDIDD---TDFYRNFKNSSNILH 420
Query: 446 NRVNKIYGPKEA 457
+V + + A
Sbjct: 421 AKVTDVPKEEAA 432
>gi|152991627|ref|YP_001357348.1| type II secretion system protein D [Sulfurovum sp. NBC37-1]
gi|151423488|dbj|BAF70991.1| type II secretion system protein D [Sulfurovum sp. NBC37-1]
Length = 678
Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats.
Identities = 57/305 (18%), Positives = 108/305 (35%), Gaps = 39/305 (12%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
V E + ++ + ++I + QV +K I E+ +++ +Q+
Sbjct: 297 PPSKAMVVSDIERNALIVLATGEQMRNIRETVRKIDIP-KVQVYVKAKIVEIDKNMAEQV 355
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVS------------------------------EGG 243
G ++ + G + S F +
Sbjct: 356 GMKYGMNGGTITSSGLFTLAGNMGASALQMSPALLGFLNTNNTKTYTDPVTGSVIQENNP 415
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG------QHLYKT 297
F F+ L LE+ A L+EP++ + + A G Q T
Sbjct: 416 AFKFDSTDKAFALGAALDLLEKNGAAHLLSEPSVLCTNNKEAEIYVGQTRSILTQAQQST 475
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKA 356
+ S + + D G+ L P + S ++ L ++T + + D P+ R
Sbjct: 476 TAISNVINNYSREDIGLTLKVKPRLSSNNQVTLEVETVLEDIDPSSEQVEDRPTTTKRTV 535
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAAT 415
T + +G I+L GL+K + +P L IP+LG LF ++ E + I T
Sbjct: 536 KTNAIVRNGEMIILGGLIKRAGGKNISKVPFLGDIPVLGEMLFTHTGDVEREQNVVIYLT 595
Query: 416 PFLVK 420
P++V+
Sbjct: 596 PYIVR 600
>gi|191174167|ref|ZP_03035680.1| bacterial type II and III secretion system protein [Escherichia
coli F11]
gi|191174561|ref|ZP_03036057.1| bacterial type II and III secretion system protein [Escherichia
coli F11]
gi|300972444|ref|ZP_07171951.1| bacterial type II/III secretion system short domain protein
[Escherichia coli MS 200-1]
gi|190905169|gb|EDV64812.1| bacterial type II and III secretion system protein [Escherichia
coli F11]
gi|190905585|gb|EDV65211.1| bacterial type II and III secretion system protein [Escherichia
coli F11]
gi|300309168|gb|EFJ63688.1| bacterial type II/III secretion system short domain protein
[Escherichia coli MS 200-1]
Length = 421
Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats.
Identities = 55/245 (22%), Positives = 105/245 (42%), Gaps = 12/245 (4%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
+N +++A DQV ++ + E + F + G + GG
Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301
F G+ D L A++ + + ++ P + SGQ+ + G + T +
Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGES 297
Query: 302 ----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
++ HD GV L TP V+ G++ L I T A D+ R+
Sbjct: 298 AGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDI-ITNQRQIQ 356
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TTV++ G T++L GL+ + +P++SKIP++G +F + + E+ ++I T
Sbjct: 357 TTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNEQRIMYILLTAH 416
Query: 418 LVKPV 422
+++P+
Sbjct: 417 IIRPL 421
>gi|289662170|ref|ZP_06483751.1| fimbrial assembly protein [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 652
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 45/287 (15%), Positives = 99/287 (34%), Gaps = 53/287 (18%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223
DQV ++ I + +G + ++G++
Sbjct: 364 RPVDQVLIESRIVIATDTFARDLGARFGVSGATGRGILSGSLESNVNYQNTSAQRANELA 423
Query: 224 ------------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ GG S + + F+ + L A++
Sbjct: 424 STATATSPGTSNTIPQFLFPSGLNIDLGAGGFTTSGAAGLAYTLLGSHFNLDIELSAMQE 483
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTP 320
++ P + + + G + Y T+ + +V + + L TP
Sbjct: 484 EGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGAGAAGGGSQANVQFKEVLLELKVTP 543
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
T+ + R+ L + + E + G +P R+ +T V + G T+V+ G+ +
Sbjct: 544 TITNDNRVFLNMNVKKDEVARFITLPQYGTVPEINRREVNTAVLVADGETVVIGGVYEFT 603
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
++ +P L IP LG LF+ ++E+ E+ + TP +++ +
Sbjct: 604 DRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 650
>gi|302879515|ref|YP_003848079.1| type II and III secretion system protein [Gallionella
capsiferriformans ES-2]
gi|302582304|gb|ADL56315.1| type II and III secretion system protein [Gallionella
capsiferriformans ES-2]
Length = 599
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 49/295 (16%), Positives = 110/295 (37%), Gaps = 33/295 (11%)
Query: 157 SQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+ A ++ + + ++ ++ + QV L+ TI EV Q G
Sbjct: 274 REAAYVIANPETGIISVRATSRQHATIREFIDKVMNNARRQVLLEATIVEVTLSDQYQQG 333
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
S+ + G S + + G ++ G FS + LE + L+
Sbjct: 334 IDWSLL-RTLGLSLTQVSPVGALTAMGTISYTNPGKPGSFSLSGSIKLLETFGKLHVLSS 392
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA--------------TSVTTHDYGVVLHFTP 320
P L+ ++ Q+ + +Y T+ + G +++ T G +++ TP
Sbjct: 393 PKLSVLNNQTGLVKVVDESVYFTIEVTQGTYGANNTVLTLPTYTSTIHTVPVGFMMYVTP 452
Query: 321 TVLSPGRIGLRIQTEV---------------SEPVIGVNAGD-MPSYRVRKADTTVELPS 364
+ + L ++ + + ++ + +P + R+ ++ + + +
Sbjct: 453 QIGGDTEVTLNLRPTITRILSYAKDPNPALINTITPALSVTNLIPQIQTREMESIMRVRN 512
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G VL GL++D IP L +P LG LF+ ++E+ + P ++
Sbjct: 513 GDIAVLGGLMQDTRAGDTNQIPGLGSVPGLGQLFKARTDKNTKSELVVFLRPVIL 567
>gi|254455430|ref|ZP_05068859.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211]
gi|207082432|gb|EDZ59858.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211]
Length = 516
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 55/292 (18%), Positives = 110/292 (37%), Gaps = 30/292 (10%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+ E + T + + KV+N ++I +QV ++ + + + KQ
Sbjct: 231 NAYSPIKITEETATRSIIVRGKERDLDTVDKVLNEIDIKT-EQVLIEAFVVKATSEFEKQ 289
Query: 213 IGFQHSIT--------GSSSGPSKSFAAD---------------FGGKFVSEGGDFSVKG 249
+G + G G + S +
Sbjct: 290 LGTRLGGYYKRNDEQIGGIVGSTSSAGTLDDTSAALAQVAKDQITNFAATGATSGIGILK 349
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
+ + ALE+ + T++ P + I+ Q AS T G + Y+T S T +TS
Sbjct: 350 KTGSAVLKAEITALEKMGMVETISNPKVFTINNQPASVTQGKEIPYETTSEGTTSTS--F 407
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ + L TP+++ G + L IQ + + D P + T + + G +V
Sbjct: 408 KEAALKLQVTPSIIGDGNVLLDIQVNNDD---ADTSQDEPPITKMEIITKLLVADGDIVV 464
Query: 370 LAGLLKDDIQQLKEGIP-LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G+ ++I + KE +P L +P++G L + + + E+ I P ++
Sbjct: 465 IGGIKSNNISKAKEQVPGGLGNVPVIGNLLKYKKKEDKLEELLIFIAPRVLD 516
>gi|149376650|ref|ZP_01894409.1| Type II secretory pathway, component PulD [Marinobacter algicola
DG893]
gi|149359023|gb|EDM47488.1| Type II secretory pathway, component PulD [Marinobacter algicola
DG893]
Length = 578
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 57/321 (17%), Positives = 110/321 (34%), Gaps = 36/321 (11%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA- 231
+ + + ++ + + + QV L+ I E+ + Q G + S+S + S
Sbjct: 264 SDGKSLAQVEEYLRRTQLIMQRQVVLEAKILEIGLNEGYQQGINWADIQSASSVTASDGL 323
Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
A G + + F ++ L ++ L+ P ++ ++ Q
Sbjct: 324 PEDFTAQALAGQVITTSDIGGLFSASVRAGDFTGLIELLGEQGNVQILSSPRISTVNNQK 383
Query: 285 ASFTSGGQHLY-------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
A G + ++ + +T G+ L TP + G I L
Sbjct: 384 AVIKVGTDEFFVTDIDFDDNNSAVTATDRTSTSVELTPFFSGISLDVTPQISEDGAITLH 443
Query: 332 IQTEVSEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ VSE + VR+ D+ + SG +V+ GL+++ +
Sbjct: 444 VHPSVSEVNDQKKVITVGDRDVTLPLALSTVRETDSVIRAESGQIVVIGGLIQNTSEDNN 503
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
+P S+IP+LG LF+ RF ++E+ I +PV D S D
Sbjct: 504 SAVPFFSEIPLLGELFKQRRFQSRKSELVILL-----RPVVAGSQQMNAD-VSASRDRMR 557
Query: 443 FFFNRVNKIYGPKEASEVEGQ 463
+ K E +
Sbjct: 558 VLRELLESSESVKPQPEKARR 578
>gi|145301440|ref|YP_001144279.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449]
gi|66947980|emb|CAE83117.1| AscC protein [Aeromonas salmonicida subsp. salmonicida]
gi|88698168|gb|ABD48952.1| AscC [Aeromonas salmonicida subsp. salmonicida A449]
gi|142856322|gb|ABO92531.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449]
Length = 617
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/314 (15%), Positives = 101/314 (32%), Gaps = 19/314 (6%)
Query: 116 IERDIAHLEMTLRRFIADSNIR-VEMVSDTVVL--HGMVRTIQDSQRAVELSETFLSQSG 172
+ + L + ++D+ ++ V + G D + +
Sbjct: 212 TDVAAPGVATILAKLLSDAGVQMVNGEGNKAATATSGQAIVQADPSLNAVIVRDAPERMA 271
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
++ K + +A I ++ + L Q+G + + +
Sbjct: 272 MYGKLIAALDKPAARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVIIK 323
Query: 233 DFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
G S+ ++ LE + ++ PTL A
Sbjct: 324 TTGDRKGIEGGAALGSLVDSKGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHS 383
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAG 346
+ K S + YG +L TP V+ G I L + E ++ A
Sbjct: 384 ETYYVKI--SGERVAELQGITYGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPNSAGAD 441
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+P+ DT + G ++++ G+ +D++ + +P L IP LGALFR+
Sbjct: 442 GIPTISRTVVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRSKDTQTR 501
Query: 407 ETEIFIAATPFLVK 420
+ P L+
Sbjct: 502 RSVRLFIIEPRLID 515
>gi|261414950|ref|YP_003248633.1| type II and III secretion system protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261371406|gb|ACX74151.1| type II and III secretion system protein [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 603
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 36/332 (10%)
Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEM--TLRRFIADSNIRVEMV--SDTVVLHGMV 151
+++ + K + ++ + + ++ + L +F+ S + V + +VL G
Sbjct: 278 SSSLWVSEEGAKALADVRVFSLKHVSPEKAMAQLSKFMKGSELNVSEYREQNALVLGGSP 337
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
R I ++ +++ + V + QVTL I E R+
Sbjct: 338 RAIARAEELLKMVD------------------VPQM-------QVTLACVIVEFRKGRSF 372
Query: 212 QIGFQHSITG--SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
IG + T DF GK +S+ G F G+L FE L ++E
Sbjct: 373 AIGVRSGATRNVGERDIQARGFFDFLGKDISKSGAFGKIGIL-PDRFELELSSMEENNEA 431
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPG 326
+ LA P +T ++G A Y S +T + G+ L TPT+ G
Sbjct: 432 KVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDYRSFNDGISLELTPTMTQDG 491
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L + E+ + R TTV L G T+ L GL++ + +++ +P
Sbjct: 492 LITLSVSPEI-KTAGRSTGDGPRDISSRNMKTTVVLRDGETLCLGGLIRKNKTEVRSAVP 550
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L IPILG LF + +E+E+ I TP +
Sbjct: 551 FLGSIPILGRLFSYTSEEEDESELAIFITPSV 582
>gi|260775643|ref|ZP_05884539.1| type III secretion system outer membrane pore YscC [Vibrio
coralliilyticus ATCC BAA-450]
gi|260608059|gb|EEX34228.1| type III secretion system outer membrane pore YscC [Vibrio
coralliilyticus ATCC BAA-450]
Length = 686
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 60/358 (16%), Positives = 118/358 (32%), Gaps = 20/358 (5%)
Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
+ D V + G ++I L+ D LN ++ ++ E LR+
Sbjct: 193 ASVTDREVRYRNEHIVI---PGVTSLIKELLSQDRNPALN-EVEHLYNLNQ-ERILRQTQ 247
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
+ +S ++ + + S ++++ L+
Sbjct: 248 SIEGGDQMDISPYIMGGSRAPETNSVNNVSADVRSNSVLIYDDLAKRSMYQRLIEKLD-K 306
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
V + I ++ R L QIG + G G + +
Sbjct: 307 PSRMVEIDAIILDIERKQLSQIGVNWGYQKNDF--------SLGSMMPQGGVQTATLFIQ 358
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
D+ F L ALE LA P++ ++ Q A S +T V
Sbjct: 359 DKGRFYAELQALEMKGKATVLANPSVLTMANQPAVIDSSETAFIQT--EGERVVDVREVT 416
Query: 312 YGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIV 369
G L P +L G+ +++ ++ + I + PS T + ++V
Sbjct: 417 AGTGLQVVPRILTGGGKTTIQLNVDIEDGNIFEEEDKETPSVNRSTISTQALVTPEQSLV 476
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
G + + +P+L IP+LG+LF+ + R + TP ++ +D+
Sbjct: 477 FGGFNVSENTRSTSKVPVLGDIPLLGSLFQVQKEARTKRVRLFILTPRILDSSMTQDV 534
>gi|322418671|ref|YP_004197894.1| type II and III secretion system protein [Geobacter sp. M18]
gi|320125058|gb|ADW12618.1| type II and III secretion system protein [Geobacter sp. M18]
Length = 862
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 72/407 (17%), Positives = 146/407 (35%), Gaps = 68/407 (16%)
Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
D V + T+ ++ K + + + L + D +R + I
Sbjct: 241 LDKKVLNESTIIIYPKTPDKIK-----QYEELFVQTFYLNKLDAKKAVNLVRTMLQVKKI 295
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
V ++ +V+ ++ +++ +E AN +V
Sbjct: 296 YVNEEANALVIRDTPEVVEVARKILE--------------ANDVPD-----------AEV 330
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------------GK 237
L+V + E+ + + G S +S G +
Sbjct: 331 LLEVEVFELSKAGTETFGLLLSSYAASMGVTGPQGKFLSDALSTTTTTSTTSGTTTTVAD 390
Query: 238 FVSEGGDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-- 294
+ FSV+G + + + + TL+ P + + + A F G +
Sbjct: 391 VSNLLNVFSVRGYNGYLTVPSATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRVPIT 450
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMP 349
+ +S+ + +V D GV ++ PT+ + +++ EVS V A +
Sbjct: 451 TTSSTSTGTSVNVQYVDVGVKVNAEPTIQLNNEVVIKLGLEVSSILGREKVGTDQATTVV 510
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ R DT + L G T ++ GL++ K+ + LL IP+LG LF N+ + +++E
Sbjct: 511 TIGTRNLDTVLSLKDGETSIIGGLMQKSETDSKKKVFLLGDIPVLGNLFSNTGKSNDKSE 570
Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
+ +A TP +V+ V E+D AF+ R ++
Sbjct: 571 LLLAITPRIVRGV-----------TVPENDVAAFWSGREDEPSTTAP 606
>gi|239618224|ref|YP_002941546.1| type II and III secretion system protein [Kosmotoga olearia TBF
19.5.1]
gi|239507055|gb|ACR80542.1| type II and III secretion system protein [Kosmotoga olearia TBF
19.5.1]
Length = 2628
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 76/404 (18%), Positives = 140/404 (34%), Gaps = 49/404 (12%)
Query: 32 ANAAVINISDVEIGKGKKISI----GLNKVIILQVPVDVQDVLVSDPTKAD---VVVHSP 84
A A + I K IS+ L++ L + D V+ + V V
Sbjct: 2260 AENANLIAVMKRIAKSLGISLMVPEELDETFTLTLEGVTWDTFVA--AIQECEPVKVEKV 2317
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
+Y+ K + G+Q+ + +I L+ + + + V+
Sbjct: 2318 NDIYIVRKKEIVSEAPTDDATGEQIYRV----YHNIEELKTLIE--FYGGTVYADSVNGI 2371
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
+V+ G+ ++ R +EL E + QV ++ I +
Sbjct: 2372 LVVKGLPKS-----RVLELMEQVSGTFTSP------------------KKQVKIETRIVD 2408
Query: 205 VR--RDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
DI KQ + S S F + + + L
Sbjct: 2409 KSLLDDITKQFSTSLGFEQPNILFSSGSLNLSFSILDSVDFAKLLKNLITGSATITAQLE 2468
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLH 317
+ ++ P++ A+SG+ A G ++ + + GV +
Sbjct: 2469 --KSNVDGSIISNPSIVALSGEEARIHIGDTIPILLKKIDPATGNIVEELQYLETGVEMT 2526
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
TPTV G I L + +VSEP N D+ + R+A T + + G T+ + GL+ +
Sbjct: 2527 ITPTVKDDGTILLDLYIKVSEPQPYAN--DLYGEKTREAKTKLVISDGNTLTIGGLVSER 2584
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+P +P +G LFR + +E+ E+ I T +V P
Sbjct: 2585 ENVSVTKLPFFGDLPFIGKLFRAEKTTKEQREMVIFITAKVVAP 2628
>gi|325922191|ref|ZP_08183978.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC
19865]
gi|325547310|gb|EGD18377.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC
19865]
Length = 674
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 121/359 (33%), Gaps = 48/359 (13%)
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
V + + + V+ L++ +QV ++ + E+
Sbjct: 292 APAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV-HREQVLVEAIVVEISDTAA 350
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--------------- 255
K++G Q + G + G + G
Sbjct: 351 KRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGTRSNNGEEDSVLEQARNVAAQ 410
Query: 256 --------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
F ++ A++ T L+ P++ + + A G +
Sbjct: 411 SLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVGQEVPI 470
Query: 296 KTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMP 349
T + ++ D GV L P + + G I L I+ EVS V+A
Sbjct: 471 TTGEVLGTANVNPFRTIQRQDVGVQLEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSEL 530
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ R+ +T V + +G + L GLL + +Q E +PLL +P LGALFR+ NR++T
Sbjct: 531 VFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTN 590
Query: 410 IFIAATPFLVK-PVAMRDLSRP-----DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
+ + P +++ + ++ P D + D +A V + G
Sbjct: 591 LMVFIRPTIIRDAADAQRMTAPRYNYLRDRQLADGDPEAALDALVRDYLRAQPPQLPAG 649
>gi|91774432|ref|YP_544188.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
gi|91708419|gb|ABE48347.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
Length = 539
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/326 (19%), Positives = 125/326 (38%), Gaps = 36/326 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
A + + + + N +KV ++ + + QV ++ +I EV + Q G
Sbjct: 214 AATVIASPETGIISVRATNRQHEKVQEFLDKVMDSARRQVLIEASIVEVTLNDTFQAGID 273
Query: 217 HSITGSSS------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
S G+ G S FSV + L L + +
Sbjct: 274 WSRLGNGFNMRSELGLSSVLTPAGIAGTAGTSVPFSVGYSSTNSDIDFSLRLLRQFGDTK 333
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-------------THDYGVVLH 317
L+ P L ++ Q+A +Y T+ S +V T GVV+
Sbjct: 334 VLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGTVQGSANLQAVTTTPNTVPVGVVMS 393
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------------MPSYRVRKADTTVELPS 364
TP + G + + ++ +S + V+ + +P +VR+ ++ +++ S
Sbjct: 394 VTPQINDSGLVNINVRPTISRVLGYVDDPNPQLAAVTPPIVSRIPQIQVRELESMLQINS 453
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G T VL GL++D+IQQ + +P ++K+P++G LF +TE+ I P +++ ++
Sbjct: 454 GNTAVLGGLMQDNIQQATDKVPGIAKVPLVGKLFTARSNFNVKTELVIFLRPIVIRNASL 513
Query: 425 RDLSRPD-DHYSVEDDAKAFFFNRVN 449
Y + VN
Sbjct: 514 ESDELASYKQYLPAQQLQRLIDESVN 539
>gi|154246049|ref|YP_001417007.1| general secretion pathway protein D [Xanthobacter autotrophicus
Py2]
gi|154160134|gb|ABS67350.1| general secretion pathway protein D [Xanthobacter autotrophicus
Py2]
Length = 767
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/291 (22%), Positives = 125/291 (42%), Gaps = 32/291 (10%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
QV ++ T+AEV + G Q +T G ++ + S+ D ++ VL F
Sbjct: 486 QVAIEATVAEVTLNDTLAYGVQFYLTSKDLGLGRNNGSVLNT-LSSDITDQAINRVLPGF 544
Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------S 300
+ +L AL T ++ L+ P++ + Q A+ G + T S S
Sbjct: 545 NLLVGRENQPRAILDALHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATVLSSS 604
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSY 351
+T ++ + G++LH P V G++ L I+ E+S P+
Sbjct: 605 NTVVNTIEYKNTGIILHVVPRVNVNGQVRLEIEQEISNVTQSDPTTSGTSSNSTGLTPTV 664
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
RK + + + SG T++LAGL+ + +++G+P+L +IP +G F ++ + TE+
Sbjct: 665 SQRKVKSVIAVASGQTVLLAGLISERHNGVRQGVPILDQIPGVGDAFAHTNGTVKRTELI 724
Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
I P +++ D ++V ++ +A V + G +A
Sbjct: 725 IFIRPQIIRDNV--------DAHTVAEELRAKLRGTVTTLPGGPQAPLGAR 767
>gi|254228227|ref|ZP_04921656.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
sp. Ex25]
gi|151939300|gb|EDN58129.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
sp. Ex25]
Length = 624
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 61/332 (18%), Positives = 118/332 (35%), Gaps = 43/332 (12%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
+ + L+R ++ +V S+ V T S + + +
Sbjct: 210 TITVPGIASVLKRVVSGVQTQVTSASNKEVTS--SDTPVKSNKTASV----------HGG 257
Query: 177 ANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQHS 218
A ++ +N + + Q ++V +I ++ + L Q+G
Sbjct: 258 ATVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWR 317
Query: 219 I---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272
G++ D V+ G + K +LD + + LE + + +
Sbjct: 318 AGVSVGNNRIVDIKTTGDVSSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESQGSAQVV 377
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----R 327
+ PTL A + K V T A + YG +L P ++ +
Sbjct: 378 SRPTLLTQENVEAVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPK 435
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I L + E + D+PS R + T + G ++++ G+ +D++ +PL
Sbjct: 436 INLSLHLEDGAKITDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPL 495
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L IP LGALFR++ + T P +V
Sbjct: 496 LGDIPYLGALFRSNTNTKRRTVRMFILEPRIV 527
>gi|74316224|ref|YP_313964.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans
ATCC 25259]
gi|74055719|gb|AAZ96159.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans
ATCC 25259]
Length = 745
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 42/265 (15%), Positives = 94/265 (35%), Gaps = 28/265 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADF 234
++ L++ QV ++ + +++G + G + + +A
Sbjct: 476 GLLARLDVPAR-QVMIEARVVIADSLWSRELGVRLGTRLFKATGRDNIGVGGTLNESASI 534
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALER---------------ATAIRTLAEPTLTA 279
G + + + + L + L+ P +
Sbjct: 535 AAGGTPTVTPQVELGTVGAAAGQIAMSLLNASNGNLLSLELSALEADNRGKILSNPRVMT 594
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
+ + A +G Q + T ++ +VT D + L P +L+ + + I+ +
Sbjct: 595 SNQKPAVILNGTQIPFITPGTANSPATVTFKDAFLCLLVDPQILNNDALIMTIEVQKDAI 654
Query: 340 VIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
A P+ R+ T V + +G T+VL G+ + +P L +P LG
Sbjct: 655 DTANAAVGADIIAPAIATRRIKTQVRVNNGETLVLGGIFDQTEFNNVDKVPFLGDVPGLG 714
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
LF+ + ++TE+ + TP ++
Sbjct: 715 NLFKRTNKQDQKTEMIVFITPRILD 739
>gi|308125809|ref|ZP_05777658.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
parahaemolyticus K5030]
gi|308111516|gb|EFO49056.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
parahaemolyticus K5030]
Length = 604
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%)
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
V V + V+T + E ++ + + A ++ +N + +
Sbjct: 199 VGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 258
Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236
Q ++V +I ++ + L+Q+G G++ D
Sbjct: 259 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDIKTTGDVDN 318
Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
V+ G S K +LD + + LE + + ++ PTL A +
Sbjct: 319 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 378
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348
K V T A + YG +L P ++ I L + E + D+
Sbjct: 379 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 436
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
PS R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T
Sbjct: 437 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 496
Query: 409 EIFIAATPFLV 419
P +V
Sbjct: 497 VRMFIIEPRIV 507
>gi|9630755|ref|NP_047359.1| maturation protein [Enterobacteria phage If1]
gi|6136220|sp|O80300|G4P_BPIF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
Short=G4P; Flags: Precursor
gi|3676288|gb|AAC62158.1| maturation protein [Enterobacteria phage If1]
Length = 429
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 11/234 (4%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV ++ I E F S S GG F G+ +
Sbjct: 197 RTQVLVESVIFETTASDGFDFSFAAGDPSGSPVAGGINTDRLTSVLSSTGGSF---GIFN 253
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGAT 305
L ALE ++ L+ P + +SGQ +FT+G + T +
Sbjct: 254 GNILGLSLKALETSSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGRVTGEAANVNNPFQ 313
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
++ HD G+ L P V G + + + T A D+ R TTV+L SG
Sbjct: 314 TIERHDVGISLKVVPVVTPGGLLIMDVSTNADSISDSQTASDI-ITNTRSISTTVQLKSG 372
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
T++L G++ + +P +SKIP++GALF + N + ++I +V
Sbjct: 373 QTVLLGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTLYILIRARVV 426
>gi|242281104|ref|YP_002993233.1| general secretion pathway protein D [Desulfovibrio salexigens DSM
2638]
gi|242123998|gb|ACS81694.1| general secretion pathway protein D [Desulfovibrio salexigens DSM
2638]
Length = 671
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 60/341 (17%), Positives = 125/341 (36%), Gaps = 44/341 (12%)
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS---SKK 183
+ +A ++ + + G + A + S + + S + + + +
Sbjct: 284 IEAVVAGEVLKSLISGGGIPSEGNSKNSVAGDSAAKSSSSRDTSSASSNDSGGVQVSADE 343
Query: 184 VMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
N L + DQV ++ + E D K+ G + G
Sbjct: 344 ATNTLIVMAPTDQLSQIDNFVEQLDQAQDQVYIEALVLETTLDHAKEFGVEWQGGIDLGG 403
Query: 226 PSKSFA---------ADFGGKFVSEGGDFSVKGVLDR--------FSFETVLHALERATA 268
+ + + + G +S+ + D + +++ + AT
Sbjct: 404 SVATLGYTKAKDSNLSAYASNPSNVPGGYSMGVLGDTISYAGRSFPTIGALVNFTKSATD 463
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVL- 323
++ P + + A G YKT SST +V D G+ L TP +
Sbjct: 464 FNLISAPQIMTLDNAEAEIFVGQNRPYKTGQSSTSGDAVVSTYEYKDVGIKLKITPRINR 523
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
G + L++ + + ++P RK DTTV L G T+V+ GL++ D + +
Sbjct: 524 EDGLVKLKVYQTYNTVSEA-STTELPITNDRKTDTTVLLADGSTMVIGGLIRADHTRTEA 582
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G+P LS +P+LG LF+ + + + + + + +++
Sbjct: 583 GVPYLSDLPLLGWLFKTTSNSGNKNTLMVFLSARIIQTTEG 623
>gi|317487416|ref|ZP_07946204.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6]
gi|316921348|gb|EFV42646.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6]
Length = 541
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/363 (19%), Positives = 133/363 (36%), Gaps = 70/363 (19%)
Query: 101 LIGHDGKQMLNLDI-LIERDIAHLEMTLRRFIADSN--------IRVEMVSDTVVLHGMV 151
LI + + + + A L+ +L +F+ +N I V+ S+ +++
Sbjct: 170 LISRQNSPLTVSVVSVRYAEAAALQQSLTKFLTAANGQGGQAAVIEVDEHSNALIIQ--- 226
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
T QD QR + L + QV LK I E ++ +
Sbjct: 227 ATEQDQQRIIRLVDNLD----------------------RPRPQVHLKAYIVEATKETAR 264
Query: 212 QIGFQHS--------------ITGSSSGPSKSFAADFGGKFVSEGGDFS----------- 246
++G Q GS + ++ GG + G
Sbjct: 265 ELGVQWGGVWRSGSFNNGNHAWIGSGASGTQGQDPVTGGLTGTHGSGLGGAPFGLDYSGI 324
Query: 247 ----------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ G + E L+ +E+ I L+ P++T + + A +G + Y
Sbjct: 325 ASNDMGSLGFLFGKVGGSMLEVQLNLMEKDGNINILSSPSITTLDNKMAYTENGEKVPYV 384
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
+ S+ G V D + L TP V+ + L++ + E + P ++
Sbjct: 385 ST-SNMGDREVKFEDAVLRLEMTPNVIDGDNLKLKVLVKKDEVDTSRSVDGNPFIIKKQT 443
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+TT+ + +G T+V++GL K+ + G+P L IP +F + + E+ I TP
Sbjct: 444 ETTLIMRNGETVVISGLTKEKGTDINAGVPGLKDIPGGKYVFGHESKGKTMEEVLIFITP 503
Query: 417 FLV 419
++
Sbjct: 504 EIL 506
>gi|256829756|ref|YP_003158484.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028]
gi|256578932|gb|ACU90068.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028]
Length = 693
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 92/241 (38%), Gaps = 19/241 (7%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------SFAADFGGKFVSEGG 243
E QV ++ + + + +G + + ++ + A G ++
Sbjct: 458 RAERQVMIEARLVYATDEFQRSLGVKWGTSYATETAANLPSEQWRGTFASTGLNAINTVN 517
Query: 244 DFSVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
++ G + +F + + L E ++T++ P + ++ A G L
Sbjct: 518 GITLGGTIGKFLGEDLFALDAALQLGEANNLVKTISSPRILTLNNNRAEIQ-QGTKLATA 576
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
S +G T+ + + + P + ++ L + E+S+ + D ++
Sbjct: 577 TESESGGTTTEYEEAVLKISVLPQITPDNKLILDL--EISDDSPKSDGRD---IDTKQTK 631
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T + + TIV+ G+ K IP L +P LG LF+N+ + + E+ I P
Sbjct: 632 TKMMVSDRETIVIGGVQKTTETSNTNQIPGLGDVPGLGWLFKNTYDAKSKAELLIFIQPR 691
Query: 418 L 418
+
Sbjct: 692 I 692
>gi|262394108|ref|YP_003285962.1| type III secretion system outer membrane pore YscC [Vibrio sp.
Ex25]
gi|262337702|gb|ACY51497.1| type III secretion system outer membrane pore YscC [Vibrio sp.
Ex25]
Length = 604
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 60/320 (18%), Positives = 115/320 (35%), Gaps = 19/320 (5%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV---ELSETFLSQSGR 173
+ + L+R ++ +V S+ V + +V E +
Sbjct: 190 TITVPGIASVLKRVVSGVQTQVTSASNKEVTSSDTPVKSNKTASVHGGATVEAEPGLNAI 249
Query: 174 NQYANSSSKKVMNLLNIAGED-QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPS 227
+ + L + Q ++V +I ++ + L Q+G G++
Sbjct: 250 IVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVD 309
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284
D V+ G + K +LD + + LE + + ++ PTL
Sbjct: 310 IKTTGDVSSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVE 369
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339
A + K V T A + YG +L P ++ +I L + E
Sbjct: 370 AVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPKINLSLHLEDGAK 427
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ D+PS R + T + G ++++ G+ +D++ +PLL IP LGALFR
Sbjct: 428 ITDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 487
Query: 400 NSRFNREETEIFIAATPFLV 419
++ + T P +V
Sbjct: 488 SNTNTKRRTVRMFILEPRIV 507
>gi|312880051|ref|ZP_07739851.1| type II and III secretion system protein [Aminomonas paucivorans
DSM 12260]
gi|310783342|gb|EFQ23740.1| type II and III secretion system protein [Aminomonas paucivorans
DSM 12260]
Length = 576
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 60/249 (24%), Positives = 99/249 (39%), Gaps = 22/249 (8%)
Query: 194 DQVTLKVTIAEVRRDILKQIGF-------QHSITGSSSGPSKSFA-----------ADFG 235
QV L+ I E+ D +++ ++G + A+
Sbjct: 313 QQVMLQARIVEIGDDGKEELESLISRVYKNWWFAFDNNGGMIGYTRINKPDLYDDDANDN 372
Query: 236 GKFVSEGGDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
G D SV +F + L ALE A R LA P++ G+ A
Sbjct: 373 RIVKPGGLDLSVVAQNPDLNFLDAGLRALETANKGRMLASPSVVVHDGKKAKIALTENVK 432
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSY 351
Y + G + + G + FTPTV I + + EV++ + G +P
Sbjct: 433 YISARDQAGNPTYSEERVGPTIEFTPTVGRDRVITMEMTLKTGEVTKYIRGGMGEQVPQT 492
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R+ ++TV + +G V+ GL +D + IP+L IP+LG LFRN + TE+
Sbjct: 493 STREVNSTVRIRNGEPFVVGGLFRDGQTHSENKIPILGDIPLLGELFRNRTTQKIHTEVA 552
Query: 412 IAATPFLVK 420
+ P+L+
Sbjct: 553 MIVIPYLLD 561
>gi|307626976|gb|ADN71280.1| general secretion pathway protein D [Escherichia coli UM146]
Length = 421
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 55/245 (22%), Positives = 105/245 (42%), Gaps = 12/245 (4%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
+N +++A DQV ++ + E + F + G + GG
Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301
F G+ D L A++ + + ++ P + SGQ+ + G + T +
Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGES 297
Query: 302 ----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
++ HD GV L TP V+ G++ L I T A D+ R+
Sbjct: 298 AGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDI-ITNQRQIQ 356
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TTV++ G T++L GL+ + +P++SKIP++G +F + + E+ ++I T
Sbjct: 357 TTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKAXSNEQRIMYILLTAH 416
Query: 418 LVKPV 422
+++P+
Sbjct: 417 IIRPL 421
>gi|145284361|gb|ABP51942.1| AscC [Aeromonas veronii bv. sobria]
Length = 617
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 49/314 (15%), Positives = 101/314 (32%), Gaps = 19/314 (6%)
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVL---HGMVRTIQDSQRAVELSETFLSQSG 172
+ + L + ++D+ +++ + G D + +
Sbjct: 212 TDVAAPGVATILAKLLSDAGVQMVNGEGSKAATATSGQAIVQADPSLNAVIVRDAPERMA 271
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
++ K + +A I ++ + L Q+G + + +
Sbjct: 272 MYGKLIAALDKPAARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVIIK 323
Query: 233 DFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
G S+ ++ LE + ++ PTL A
Sbjct: 324 TTGDRKGIEGGAALGSLVDSKGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHS 383
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAG 346
+ K S + YG +L TP V+ G I L + E ++ A
Sbjct: 384 ETYYVKI--SGERVAELQGITYGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPNSAGAD 441
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+P+ DT + G ++++ G+ +D++ + +P L IP LGALFR+
Sbjct: 442 GIPTISRTVVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRSKDTQTR 501
Query: 407 ETEIFIAATPFLVK 420
+ P L+
Sbjct: 502 RSVRLFIIEPRLID 515
>gi|121999034|ref|YP_001003821.1| type II and III secretion system protein [Halorhodospira halophila
SL1]
gi|121590439|gb|ABM63019.1| type II and III secretion system protein [Halorhodospira halophila
SL1]
Length = 372
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 60/315 (19%), Positives = 121/315 (38%), Gaps = 20/315 (6%)
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
+ E +L + +S A T +++++ L+ Q
Sbjct: 49 VHAEAAQLAELLRDETGVLSESGHASVDERTNTLILQDTPARLEEAEQLVRELD-RANRQ 107
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV-------- 247
V ++ I + +++G + ++ +F + G + G
Sbjct: 108 VMIEARIVLASGEYSRELGSRLGLSSERGDGHFAFDSLPGSNDAAVGDGLLAELPPVGEG 167
Query: 248 ------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G + + L A+E R ++ P + Q+A G Q Y+ + S
Sbjct: 168 ARLSVSVGEVGERLLQLELSAMEAEGHGRVVSSPRVLTTERQAARIEQGVQIPYQETAES 227
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
GAT+V D + L TP V + L ++ V++ +G +PS + T +
Sbjct: 228 -GATAVAFQDAALSLTATPQVTEDDAVSLALR--VTKDAVGQIYEGVPSIDTQAVTTHLR 284
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ +G TIVL G+ + + ++ ++ +P L ++P++G LFR + E+ + TP LV+
Sbjct: 285 VQAGETIVLGGVREHEQRKQRQRVPWLGELPLIGWLFRQRMSEQSHHELLVFVTPRLVE- 343
Query: 422 VAMRDLSRPDDHYSV 436
S D +
Sbjct: 344 -DGPSSSTAVDDAAP 357
>gi|312794853|ref|YP_004027775.1| general secretion pathway protein D [Burkholderia rhizoxinica HKI
454]
gi|312166628|emb|CBW73631.1| General secretion pathway protein D [Burkholderia rhizoxinica HKI
454]
Length = 847
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 60/296 (20%), Positives = 103/296 (34%), Gaps = 46/296 (15%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPS 227
V++ L+ QV ++ I ++ +G Q +++G
Sbjct: 401 NVIDQLDQR-RAQVYIEAVIVDMNATSGANLGIQWQGALLSNNGNNGVYGGSNFNANGSQ 459
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDR------------------FSFETVLHALERATAI 269
G V++ + + F +L AL ++
Sbjct: 460 SIVGLSATGAIVAQDPATAAAQIGPNNLLNNGLNIGLLHRFGKVFGLGGLLQALATSSDT 519
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----------HDYGVVLHFT 319
L+ P L + + A G T S +T + TT D G+ LH
Sbjct: 520 NILSTPNLITLDNEEARIVVGQNVPVVTGSYATPTANTTTSVSAFNTFDRQDVGITLHIK 579
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
P + G + L+I E S G + S R +TV G IVL GL++D+
Sbjct: 580 PQISEGGVLKLQIYQEDSAVQQGTQSNPGGVSITKRSIQSTVLADDGEIIVLGGLIQDNY 639
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
+P L IP+LG+LFR+ R ++ + + P +V+ + D Y
Sbjct: 640 ANGNSKVPWLGNIPVLGSLFRSESKTRTKSNLMVFLRPVIVRDQSTSS-QLALDRY 694
>gi|330719673|gb|EGG98224.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC2047]
Length = 419
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 45/273 (16%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI--------------------------TGSSSGP 226
QV L+ I EV Q G S TG ++
Sbjct: 125 RRQVILEAKILEVELSDGFQAGVNWSALAEVGQDKNVIFGTGLTNSVRTINPVTGDTTLT 184
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ S+ L+ F ++ L +++ L+ P ++ ++ Q A
Sbjct: 185 NTILGTPTATTATSDSVGGVFSAALNLKDFNALIDLLSTQGSVQVLSSPRISTVNNQKAV 244
Query: 287 FTSGGQHLYKTV----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
G + T S+++ +T G+ L TP + G + L I V
Sbjct: 245 IKVGTDEFFVTEISSETTTNTSSTTSTDVELTPFFSGIALDVTPQISEEGEVVLHIHPTV 304
Query: 337 SEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
SE P+ +R+ D+ V +G +V+ GL+++ P
Sbjct: 305 SEVTDQTKTVVGPNGDLVLPLALSSIRETDSIVRARNGQVVVIGGLMQNSSTDNNAKTPF 364
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L +P+LG FR R + ++E+ I P +
Sbjct: 365 LGDLPLLGNAFRQKRQSSVKSELVILLKPIIAD 397
>gi|258593213|emb|CBE69552.1| exported protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length = 726
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 77/440 (17%), Positives = 139/440 (31%), Gaps = 45/440 (10%)
Query: 56 KVIILQVPVD-VQDVLV---SDPTKADV----VVHSPRTMYLFGKNVGQANVILIGHDGK 107
K + + D +Q + V + AD+ R + G G G
Sbjct: 304 KALDVPTKRDNIQRIFVYFVENAKAADLANTLNTLYGRRDLVRGAAPGT----RPGQTPA 359
Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
+ E VV G V + D + +T
Sbjct: 360 RPGVSGPSTTTAPPPPAPGPPPAAPVPPTGAEAAPGEVV--GEVTIVTDEATNALIIKTS 417
Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
+ V QV +++ +A++ + + + S
Sbjct: 418 PRNYEIVEATIKQLDIV--------PKQVLIELMLAQITLSDAFDFSLEQVLRSGTIMLS 469
Query: 228 KSFAADF--------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
V+ F+ +D+ F VL+ L T + LA P L
Sbjct: 470 SVHGGPAAAAIAAFKNPSGVAPPSGFTFTTFVDKEQFRLVLNNLASVTKVEVLANPHLLT 529
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSV-------TTHDYGVVLHFTPTVLSPGRIGLRI 332
+ + A+ G + T + S G + V D G++L P V + L I
Sbjct: 530 ANNKEANIQIGQEVPIPTGTQSVGTSDVANVFSTFQRKDIGIILKIKPHVNEKRLVTLDI 589
Query: 333 QTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+TE + V S+ T + + ++V+ G+++ D + GIP LS
Sbjct: 590 ETENTSVAGEVPDALQGGASFNKTTTKTALVVQDSQSLVIGGIIRTDKSKGYSGIPFLST 649
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
IP+LG LFRN+ + TE+ I TP ++ + + + + R+ +
Sbjct: 650 IPLLGYLFRNTSEDLIRTELVILITPHVI--ASPEEGQALTKRFRERVET----LERLMQ 703
Query: 451 IYGPKEASEVEGQNYKGAIG 470
+ + KG G
Sbjct: 704 SSPTSPSGLAPKLDDKGKDG 723
>gi|217977094|ref|YP_002361241.1| general secretion pathway protein D [Methylocella silvestris BL2]
gi|217502470|gb|ACK49879.1| general secretion pathway protein D [Methylocella silvestris BL2]
Length = 805
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 76/327 (23%), Positives = 137/327 (41%), Gaps = 29/327 (8%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R + + NQ + +K + L+ + QV + +TIAEV + G Q
Sbjct: 488 RIMADAANNSVVIYANQESYRIIEKALEQLD-RPKLQVAIDLTIAEVTLNDTLNYGVQFF 546
Query: 219 ITGSSSGPSKSFA----ADFGGKFVSEGGDFSVKGVLDRFSFE--------TVLHALERA 266
+ S+ G + G GG S G L F+ +++AL +
Sbjct: 547 LGSSNLGLGANNGFVTNTAAGVPLAQTGGVASAAGTLPGFNLTIGNALSPRAIINALHQY 606
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTP 320
T ++ L+ P+L + Q A+ G + +T S++ ++ + G++L P
Sbjct: 607 TDVKVLSNPSLVVVDNQVATLQVGDEIPIQTGSATVLSANNAVVNTIDYKNTGIILRVQP 666
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
V G + L ++ E+S G P++ RK +++ + SG T++LAGL+ D +
Sbjct: 667 RVNFNGNVSLDVEQEISNQAGTSALG--PTFSQRKVKSSILVASGQTVLLAGLISDGVNG 724
Query: 381 LKEGIPLLSKIPILGALFRNSRFN-REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
K GIP+ +IP+LG LF NS TE+ I P +++ D + E+
Sbjct: 725 TKAGIPVADQIPVLGNLFNNSSNRLVSRTELIIFIRPQIIRDGV-------DASFVAEEL 777
Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYK 466
N+V IY + + + +
Sbjct: 778 RSKLRGNKVGDIYPTGAVTPIPLRALQ 804
>gi|253997512|ref|YP_003049576.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8]
gi|253984191|gb|ACT49049.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8]
Length = 719
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/215 (20%), Positives = 86/215 (40%), Gaps = 3/215 (1%)
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ Q + +SS ++ + +S+ V L A+E
Sbjct: 502 THNGAVQTTLTNGGVFTSSDGQPDLMSNLAVANAAGSIAYSIYNVAAGLLLNLELTAMET 561
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+ ++ P + + A +G + Y SS+GAT+V + L TP +
Sbjct: 562 DQRGKIVSSPRVITANQHKAKIAAGTEIPYLQA-SSSGATNVAFKPAVLSLEVTPQITPD 620
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+I + + ++ + +G +PS + +T V + +G T VL G+ + + +
Sbjct: 621 EKIIMEL--DIKKDKVGQIFNGVPSIDTQNINTQVLVGNGETAVLGGIFEQIERDDVSKV 678
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
P +P+ G LF+ ++TE+ I TP +V
Sbjct: 679 PFFGDLPLFGNLFKKKTRQNDKTELLIFITPKIVD 713
>gi|91224449|ref|ZP_01259711.1| putative type III secretion protein YscC [Vibrio alginolyticus
12G01]
gi|91190791|gb|EAS77058.1| putative type III secretion protein YscC [Vibrio alginolyticus
12G01]
Length = 624
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/332 (17%), Positives = 116/332 (34%), Gaps = 43/332 (12%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
+ + L+R ++ +V S V + ++ + +
Sbjct: 210 TITVPGIASVLKRVVSGVQTQVASAS-----SKEVTSPDKPVKSNKTASVH-------GG 257
Query: 177 ANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQHS 218
A ++ +N + + Q ++V +I ++ + L Q+G
Sbjct: 258 ATVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWR 317
Query: 219 I---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272
G++ D V+ G + K +LD + + LE + + +
Sbjct: 318 AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVV 377
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----R 327
+ PTL A + K V T A + YG +L P ++
Sbjct: 378 SRPTLLTQENVEAVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPE 435
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I L + E + D+PS R + T + G ++++ G+ +D++ +PL
Sbjct: 436 INLSLHLEDGAKIADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPL 495
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L IP LGALFR++ + T P +V
Sbjct: 496 LGDIPYLGALFRSNTNTKRRTVRMFILEPRIV 527
>gi|269967259|ref|ZP_06181323.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B]
gi|269828115|gb|EEZ82385.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B]
Length = 624
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/332 (17%), Positives = 116/332 (34%), Gaps = 43/332 (12%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
+ + L+R ++ +V S V + ++ + +
Sbjct: 210 TITVPGIASVLKRVVSGVQTQVASAS-----SKEVTSPDKPVKSNKTASVH-------GG 257
Query: 177 ANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQHS 218
A ++ +N + + Q ++V +I ++ + L Q+G
Sbjct: 258 ATVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWR 317
Query: 219 I---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272
G++ D V+ G + K +LD + + LE + + +
Sbjct: 318 AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVV 377
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----R 327
+ PTL A + K V T A + YG +L P ++
Sbjct: 378 SRPTLLTQENVEAVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPE 435
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I L + E + D+PS R + T + G ++++ G+ +D++ +PL
Sbjct: 436 INLSLHLEDGAKIADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPL 495
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L IP LGALFR++ + T P +V
Sbjct: 496 LGDIPYLGALFRSNTNTKRRTVRMFILEPRIV 527
>gi|171911307|ref|ZP_02926777.1| putative general secretion pathway protein [Verrucomicrobium
spinosum DSM 4136]
Length = 821
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 65/359 (18%), Positives = 116/359 (32%), Gaps = 97/359 (27%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217
A ++ T Q + + L A Q+ + EV + ++GF
Sbjct: 426 ATFVAATSQLIVRNTQPNLDQVEAFVEGLTKAVPQQIYITTKFVEVSQKNTDELGFDWLL 485
Query: 218 ---SITGSSSGPSKSFAADFGGKFVSEG-------------------------------- 242
I G + + A F +G
Sbjct: 486 GQFDIGGRTFASGGTAATSSNYSFTQDGTAIGGYSVTSGNRSGSSAIAADSIDGLISGQS 545
Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
G F++ GV F+ + AL + + ++ P++T SGQ A+ + +Y
Sbjct: 546 QASSVAPGVFTLAGVFTDPQFQVTIRALSQKKGVDLMSAPSVTTRSGQRATVEVIREFIY 605
Query: 296 KTVSSS----------------------------TGATSVTTHDYGVVLHFTPTVLSPG- 326
T T T+ GV L P + G
Sbjct: 606 PTEFDPPQIPQNFGATSSTSTTGTSSTSSFPVTPTTPTAFEMRPVGVRLEVDPVIGPDGY 665
Query: 327 RIGLRIQTEVSE------------------------PVIGVNAGDMPSYRVRKADTTVEL 362
I L + EV+E + N + P + RK T V +
Sbjct: 666 TIDLNLAPEVTEFEGFINYGSPINTASTDALGNPTTVTLTENKIEQPVFSTRKVTTAVTV 725
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
G T+ + GL+++D+Q +++ +P+L +P LG LF++ + + + I T L+ P
Sbjct: 726 WDGQTVAMGGLIREDVQDVEDKVPILGDLPFLGRLFQSKAEDHFKRNLMIFVTAKLIDP 784
>gi|332186824|ref|ZP_08388566.1| general secretion pathway protein D [Sphingomonas sp. S17]
gi|332013157|gb|EGI55220.1| general secretion pathway protein D [Sphingomonas sp. S17]
Length = 739
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 72/460 (15%), Positives = 147/460 (31%), Gaps = 70/460 (15%)
Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
+ + I +N+ + + + +I++ L+ + +++ V + + AD
Sbjct: 216 STGVSVVAIDSSNSIALRGDPSSVARFAQIALDLDNKA--KSGTEIRVVFLQN---ADAE 270
Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
P + + VGQ + + + A +R + + +
Sbjct: 271 QLLP----VLQQLVGQTPDPVQETTLSRGSFTQTNNQAGSAAGTSIAQRVQPVAQPQAQN 326
Query: 141 VSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
+G I + +V+ L++ +Q
Sbjct: 327 APGAGGQNGQQPAISTQGGRTAAVVTRFVGANAIVIAGPADIQRQIGEVIRQLDVR-REQ 385
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK------------------ 237
V ++ +AEV +++G Q + S G +
Sbjct: 386 VLIEAIVAEVSDQTARRLGAQFLLGSLSGGAFAASTYGNTAPNILQIAGAVGAQTLGGTR 445
Query: 238 -------------------------------FVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ GG G + F +++A++
Sbjct: 446 TIVTAPDGTRTETNVPNPAFSQLTQSAVQSILGTTGGFAGWGGQVGDTVFGAIINAVKSD 505
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPT 321
T L P + + Q A G + T + +V + G+ L P
Sbjct: 506 TTSNLLQVPHIITLDNQQAHSLVGQEIPVTTGQALSNNFDNAFRTVQRQNVGIQLDVKPQ 565
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
V + G + L ++ EVS V++ + R + G V+ GLL D+ ++
Sbjct: 566 VNAGGSLKLYVRLEVSSIAGPVSSNNSELILNKRAFENVFTPDDGQITVIGGLLDDNERR 625
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
E IPLL IP LGALFR+ +R +T + + P +++
Sbjct: 626 TIEKIPLLGDIPGLGALFRSKARSRSKTNLMVFIRPTILR 665
>gi|313680282|ref|YP_004058021.1| type II and III secretion system protein [Oceanithermus profundus
DSM 14977]
gi|313152997|gb|ADR36848.1| type II and III secretion system protein [Oceanithermus profundus
DSM 14977]
Length = 518
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 70/305 (22%), Positives = 130/305 (42%), Gaps = 12/305 (3%)
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
L ++ A S I+VE + + + + L +G + +
Sbjct: 220 LAEAMQARQAQSQIKVEAGAGEQQVQATIPEKSTISIVADTRTNTLIVTGTAKQLELVEE 279
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+ L QV ++V I EV + +++ +G + + + S F +
Sbjct: 280 LIKKLDF--PVQQVNVQVRIQEVTQTLVRNLGLKWNTISGGNIVSSIVDNGLSLIFDA-- 335
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
L + L ALE+ RT+ + +T ++ Q+ SG K V
Sbjct: 336 -----TRSLASLNIVATLEALEKQGLSRTVNDSNITVLNNQTGFIQSGFTIFVKRVVGDK 390
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVE 361
+D GV++ TP + + G+I L++++EVS+ GD+ +K++TT+
Sbjct: 391 VEKV--PYDIGVIVRVTPQITADGQIVLKVESEVSDIKERNPVDGDVDVLSKQKSETTLR 448
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
L +G T+VL GL+K + +G+P+L IP+LG+LF+ + N E+ E+ I T +V
Sbjct: 449 LDNGQTVVLGGLIKTKRDKTTQGVPVLMHIPVLGSLFKQTTVNNEDNELLIVITANIVND 508
Query: 422 VAMRD 426
Sbjct: 509 ATAAA 513
>gi|167589893|ref|ZP_02382281.1| type II and III secretion system protein [Burkholderia ubonensis
Bu]
Length = 773
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 68/349 (19%), Positives = 134/349 (38%), Gaps = 35/349 (10%)
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V T+ ++ +A + + + L D + LR+ I ++ V+
Sbjct: 234 KVLDRHTLLIYPSQPDKA-----RNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVD 288
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+ VV+ TIQ + ++V+ L+I + VTL
Sbjct: 289 ERVNAVVMRDTPETIQVA------------------------ERVVMGLDIPQSE-VTLD 323
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
V + EV + +G Q+ S + V +
Sbjct: 324 VQVLEVNMNDSLDLGVQYPGKVQFSALGGVEGGALTLGDLLRLNRDRVGVASESGGLALA 383
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLH 317
+ L++ +TLA P + + + A+ G + T +++ G SV+ D G++L
Sbjct: 384 IDMLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVTTTNANGVVTESVSYQDVGLMLK 443
Query: 318 FTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
P + + +++ EVS + R A+T + +G T +LAGL+
Sbjct: 444 VEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAYALGTRNAETLMTAKNGETQILAGLV 503
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
K + + G+P +S +P++G LF ++ + E TEI + TP + + +
Sbjct: 504 KRNESENIAGLPGMSGLPVIGRLFGSNGRSNERTEIVLLITPHIERNLD 552
>gi|54124974|gb|AAV30242.1| YscC [Aeromonas hydrophila]
Length = 614
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 53/311 (17%), Positives = 99/311 (31%), Gaps = 19/311 (6%)
Query: 119 DIAHLEMTLRRFIADSNIR-VEMVSDTVVL--HGMVRTIQDSQRAVELSETFLSQSGRNQ 175
D + L R ++D+ ++ V V G D L +
Sbjct: 215 DAPGVATILSRLLSDAGVQMVNGEGAKGVGTNSGQAIVQADPSLNAVLVRDAPERMAMYG 274
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
++ K + +A I ++ + L Q+G + + + G
Sbjct: 275 KLIAALDKPAARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVIIKTTG 326
Query: 236 G--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
S+ ++ LE + ++ PTL A +
Sbjct: 327 DRKGIEGGAALGSLVDSRGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHSETY 386
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMP 349
K S + YG +L TP V+ G + L + E S+ +P
Sbjct: 387 YVKI--SGERVAELKGITYGTMLRMTPRVIQLGDRPEVSLSLHIEDGSQKPNSSGLDGIP 444
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ DT + G ++++ G+ +D++ + +P L IP LGALFR+
Sbjct: 445 TISRTVVDTIARVGHGQSLLIGGIYRDELSESLSKVPFLGDIPYLGALFRSKESQTRRQV 504
Query: 410 IFIAATPFLVK 420
P L+
Sbjct: 505 RLFIIEPRLID 515
>gi|192358819|ref|YP_001982858.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107]
gi|190684984|gb|ACE82662.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107]
Length = 578
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 61/281 (21%), Positives = 102/281 (36%), Gaps = 43/281 (15%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--- 241
+ ++ + QV L+ I EVR + G G S S
Sbjct: 275 LERSELSAKRQVILETKILEVRLSEGFEAGVNWGAISGQLGYSYGSGRGTISASDSLEMN 334
Query: 242 --------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
GG G++ +L LE A++ L+ P ++ ++
Sbjct: 335 YGPGFQMTDATRTITESSEYGGKDLFAGLVQVADITKLLSLLETQGAVQVLSSPRVSTVN 394
Query: 282 GQSASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGL 330
Q A G + T SS T+ ++ G+ L TP + G + L
Sbjct: 395 NQKAVIRVGYDEYFVTGISSNTTTNAAAITNTPNIELSPFFSGISLDVTPQISEAGEVIL 454
Query: 331 RIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLKDDIQQL 381
I VSE + + +R++D+ V+ +G IVL GL+ + +Q
Sbjct: 455 HIHPIVSEVTDQLKVFTVGDENFSLPLALRGIRESDSIVKAANGQVIVLGGLMTESNRQT 514
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
PLL IPI+ +LFR ++ +TE+ I P +V
Sbjct: 515 DGKRPLLGDIPIVNSLFRTKNKSKSKTELVILLRPIVVDDT 555
>gi|82703698|ref|YP_413264.1| type II and III secretion system protein [Nitrosospira multiformis
ATCC 25196]
gi|82411763|gb|ABB75872.1| type II and III secretion system protein [Nitrosospira multiformis
ATCC 25196]
Length = 749
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 78/456 (17%), Positives = 168/456 (36%), Gaps = 64/456 (14%)
Query: 2 RYLQRTFFTMMSIFLFSSNP-----SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56
R +R + + + ++ + K P E + + + I++ +K
Sbjct: 152 RDARRLIQRITEMEVQAAQAGPILKTAFKKPITLEFRDTGLKSVFEILARTGGINVVFDK 211
Query: 57 VIILQVPVDVQDVLVSDPTKADV------------VVHSPRTMYLFGKNVGQANVILIGH 104
+ + V + DV V + ++ ++ +
Sbjct: 212 DVKQDSK---TTIFVRETNIEDVFKLLLVTNQLAHKVLNENSVLIYPNTPAK-----QKE 263
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
+ M+ + D+ + ++ I ++ V+ + V+ A+ L+
Sbjct: 264 YQELMVRSFFVTNTDVKQMVAMVKGLIKTKDMHVDEKLNLFVMKDTP-------EAIRLA 316
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SIT 220
E ++ + + +V L+V + E+ R+ L +G Q+ ++
Sbjct: 317 ERLVTLNDL------------------ADPEVMLEVEVLEIGRNKLLNLGLQYPEKINVN 358
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET----VLHALERATAIRTLAEPT 276
++ + A + G + + + + F +++ ++ I LA P
Sbjct: 359 YLTAASAAGAAPFPPFQISRAGVNGNGSNLDNLIGFVANPALIVNLKQQDGLINVLANPR 418
Query: 277 LTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
+ + + A G + T +++ A+SV+ D G+ L T+ + +++
Sbjct: 419 IRVKNREKAKVLIGDKVPVVTTTAAANVGVASSVSYLDVGLKLDVESTISLQDEVSMKVS 478
Query: 334 TEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
EVS V G R A TT+ L G T VLAGL+ DD + +P L++
Sbjct: 479 LEVSNIVKEVPVTGGGLAYQVGTRTAATTLALKDGETQVLAGLISDDERTTLSKVPGLAE 538
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+P +G LF N R +TEI + TP +V+ +A
Sbjct: 539 LPWIGKLFINKNVVRNKTEIALLITPRIVRNIARPA 574
>gi|254522174|ref|ZP_05134229.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14]
gi|219719765|gb|EED38290.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14]
Length = 638
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 46/284 (16%), Positives = 100/284 (35%), Gaps = 54/284 (19%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------------- 225
DQV ++ I +++G + I+GS
Sbjct: 350 RPVDQVLIESRIVIATDTFARELGAKFGISGSRDNVYFSGDLESNRKTRQSQADTSAANA 409
Query: 226 ----------------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
++ + + G ++ + + + L A+
Sbjct: 410 KAYRDWEAGGSVGPAPVPLLPAITRGLNFNLPAASTATPGSLALSILNAGYLLDVELSAM 469
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFT 319
+ ++ P + + + A G + Y T+S +V + + L T
Sbjct: 470 QEEARGEVISNPRVVTTNQREALIKQGKEIGYVTISGGGTGGVATPNVQFKEVVLELKVT 529
Query: 320 PTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
PT+ + R+ L +Q EV + G +P R+ +T V + G T+V+ G+ +
Sbjct: 530 PTITNDNRVFLNMQLKKDEVERLIQLQGYGTVPEINRREVNTAVLVDDGQTVVIGGVYEF 589
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ +P L +P LG LF+ ++++ E+ + TP +++
Sbjct: 590 TDRSSVSKVPFLGDVPFLGNLFKKRGRSKDKAELLVFVTPKVLR 633
>gi|312883863|ref|ZP_07743580.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368321|gb|EFP95856.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 619
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 54/274 (19%), Positives = 101/274 (36%), Gaps = 31/274 (11%)
Query: 175 QYANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQ 216
A+ ++ +N + + Q ++V +I ++ + L Q+G
Sbjct: 251 SAASVEAEPGLNAIIVRDTQARLPLYRQLVAQLDQPQSRIEVALSIVDISANNLSQLGVD 310
Query: 217 HSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIR 270
G++ + D V G + +LD + ++ LE + +
Sbjct: 311 WRAGVSVGNNKIVDINTTGDVTNGDVLLGSGQTFNSLLDATNLNFLLAQINLLESQGSAQ 370
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---- 326
++ PTL A ++ K V T A + YG +L P ++
Sbjct: 371 VVSRPTLLTQENVEAVLSNSTTFYVKLVGRETAA--LDEVTYGTLLRIVPRIVGDRFAER 428
Query: 327 -RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
I L + E + +PS R + T + G ++++ G+ +D+I Q +
Sbjct: 429 PEINLSLNLEDGAQIPDNVIDGVPSIRKTEISTLATVKQGQSLLIGGVYRDEISQQLRKV 488
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
PLL IP LGALFR++ T P +V
Sbjct: 489 PLLGDIPYLGALFRSTNDITRRTVRMFIIEPRIV 522
>gi|258406319|ref|YP_003199061.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692]
gi|257798546|gb|ACV69483.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692]
Length = 719
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/276 (18%), Positives = 99/276 (35%), Gaps = 18/276 (6%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+ R + + T + + V++ L+ E QV ++ I + + +G
Sbjct: 450 SERGRIGQDARTNTLIVSDTRDNIRKVRSVIDRLD-RPEPQVLIEARIVYAKDAFKRSLG 508
Query: 215 FQHSITG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
+ S V+ G +D F + L
Sbjct: 509 VSLAGEYYDDVGAVGQYEKSLSAGVLQGFTPEVSTVNMQGALDKISGIDLFELDAQLKLG 568
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
E +T++ P L ++ Q A S G + S +G T + + + L P +
Sbjct: 569 ELKGVTKTISSPRLVTLNNQQAEI-SQGIKIANESESESGGTDIEYTEATLKLAVQPQIT 627
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
++ L + ++++ N D R A T + + + T+VL G+ + K
Sbjct: 628 PDDKVILDL--DIADDSPTENGED---IETRTARTKLLVENQETVVLGGVYQVIENNEKN 682
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P L +P+LG LF+ N E E+ I P ++
Sbjct: 683 QVPGLGDVPLLGWLFKTDNVNNENRELLIFIRPTIL 718
>gi|330863522|emb|CBX73638.1| general secretion pathway protein D [Yersinia enterocolitica
W22703]
Length = 577
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 12/247 (4%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----S 227
+ +V+ L+I QV ++ I E + +G Q + +
Sbjct: 330 TADPKVMKELDQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKT 388
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
S + + + +++ + AL + LA P++ + A F
Sbjct: 389 NSIQTNNNSGNPIPMMMAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEF 448
Query: 288 TSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
G + T + +T S++ GV+L P + + L I+ EVS
Sbjct: 449 NVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSS 508
Query: 344 NAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ + R + V + SG T+V+ GLL I ++ +PLL IP +G LFR
Sbjct: 509 DVNANNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQ 568
Query: 401 SRFNREE 407
S+ ++
Sbjct: 569 SKERLKK 575
>gi|291333680|gb|ADD93369.1| type II and III secretion system protein [uncultured marine
bacterium MedDCM-OCT-S01-C143]
Length = 437
Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats.
Identities = 58/305 (19%), Positives = 107/305 (35%), Gaps = 58/305 (19%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSK 228
+ S ++++ L++ QV ++ I EV Q G ++ S G
Sbjct: 21 ASGEDYRSMRRLIEKLDVP-RTQVYVEAAILEVTVTDKGQRGLDWHSPFGVSDSGIGGVD 79
Query: 229 SFAADFGGKFVSEGGDFSVKGVLDR----------------------------------F 254
S + G S V L
Sbjct: 80 SGSVGNLGFIQSATSSGGVSPTLGALAAPESLLTVAGGSLGGIVGEGVSIPIGDSTLTLP 139
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------------- 300
+F +L LE ++ L+ P + + AS G + ++ +S
Sbjct: 140 AFGVILKWLETSSTANILSTPHILTTDNEEASIEVGQKIPFRRGTSIPAAAGALGGLGGG 199
Query: 301 -----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
+ +S D + L TP V ++ L I ++ + A P R
Sbjct: 200 SLGGLGSLFSSTDRIDVSLKLTLTPHVNERNKVRLDIDQQIEDVAGIDEATGQPITAKRS 259
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
A T V + TIVL GL++D + + + IP+L +P++G +FR + E+ + + T
Sbjct: 260 AKTVVVVDDQQTIVLGGLIRDRVSEGESKIPVLGDLPLIGWMFRQHTKDVEKVNLLLVLT 319
Query: 416 PFLVK 420
P++V+
Sbjct: 320 PYVVR 324
>gi|307720788|ref|YP_003891928.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas
autotrophica DSM 16294]
gi|306978881|gb|ADN08916.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas
autotrophica DSM 16294]
Length = 542
Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats.
Identities = 54/290 (18%), Positives = 102/290 (35%), Gaps = 33/290 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------SITGSSSGPS 227
+ + L + QV + V + V K G + ++ G +
Sbjct: 226 ESYLKKLQDKVKLQVLIDVQLLSVTMSKGKSTGIDWKQLYALQNIKLSASTANYNNIGTT 285
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
G + + V+ L+ + +++ P + ++ Q A
Sbjct: 286 IPADGIITDTAAVGAGASQLLSMSASGQLTEVIKFLKTQGDVNSISNPKVLTLNNQPALI 345
Query: 288 TSGGQHLYKTVSSSTGA------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
T+G ++ YK +SS+ +V + GV+L TP + I L+I
Sbjct: 346 TAGTEYFYKIISSTNQQGTGGGVAATTQNDTVNSVFAGVLLTITPEISDDKTITLKINPS 405
Query: 336 VSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+SE ++ P R+ + V + G I+L GL+ +P+L
Sbjct: 406 LSETTTDISQTSNSGRDMPPDLNRRQLSSVVTVKDGNRIILGGLINSKNTSDTNQVPILG 465
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
IP+LG LF++ + E+ I P ++ +S D Y D
Sbjct: 466 SIPVLGYLFKHEEIVKTVEELVIIIEPHIIH-KEKDSISLSDLGYEGLSD 514
>gi|77917753|ref|YP_355568.1| putative type II secretion system protein [Pelobacter carbinolicus
DSM 2380]
gi|77543836|gb|ABA87398.1| putative type II secretion system protein [Pelobacter carbinolicus
DSM 2380]
Length = 779
Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats.
Identities = 65/362 (17%), Positives = 131/362 (36%), Gaps = 39/362 (10%)
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
+ +++ ++ + + + L H LR + +N+ V
Sbjct: 243 AKPLNDKSVLIYPNSTDKT-----RQYDDYKIKTYYLSHISAKHAVNLLRTMLKINNLFV 297
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ +V + ++L+E L + + +V
Sbjct: 298 HEERNALVFR-------ERPEVIQLAEQILDAND------------------RADSEVLF 332
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF-- 256
++ + EV + G + S G +K G + V+ S
Sbjct: 333 ELELIEVSHSDNWKFGPSLNPNSVSLGLAKGGNIVASGLSAGDATTNLVQSFSSLESVYT 392
Query: 257 --ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDY 312
V + LA P + + + A+ G + TV+++ + ++ D
Sbjct: 393 LPTVVFDLQKTLVDSEILATPRIRVKNREKANVHVGNREPVITVTTTGETSTDNIQYVDV 452
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIV 369
GV L P + + + EVS N S KA TT+ L +G V
Sbjct: 453 GVKLDIEPKIQLDDTVVTNLSLEVSGVTEKNTTANGSLALSISTTKAQTTLTLKNGERTV 512
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
+ GL++DD + ++ IPLL +P++G LF N ++++ EI ++ TP +++ V + D +
Sbjct: 513 IGGLIRDDSTKTRKIIPLLGDLPLIGRLFTNHNKDKKKREILLSITPHILQNVDLPDRTL 572
Query: 430 PD 431
D
Sbjct: 573 TD 574
>gi|171910644|ref|ZP_02926114.1| type II/III secretion system protein [Verrucomicrobium spinosum DSM
4136]
Length = 816
Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats.
Identities = 67/367 (18%), Positives = 117/367 (31%), Gaps = 105/367 (28%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217
AV ++ T Q + + L Q+ + EV + ++GF
Sbjct: 415 AVFVAATSQLIVRNTQPNLDQVEAFVEGLTKQVPQQIYITTKFVEVSQKNTDELGFDWLI 474
Query: 218 ---SITGSSSGPSKSFAADFGGKFVSEG-------------------------------- 242
I G + G + G S
Sbjct: 475 GGFDIGGRAFGSGGTTGNSSNGPVSSSNYPFSQSGVPIGQNPVTAGLRSGTSAIAADSID 534
Query: 243 --------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
G F++ GV F+ V+ AL + + ++ P++T SGQ A+
Sbjct: 535 GLISGQSLVSSAAPGVFALAGVFTDPQFQVVIRALSQKKGVDLMSAPSVTTRSGQRATVE 594
Query: 289 SGGQHLYKTVSSS-----------------------------TGATSVTTHDYGVVLHFT 319
+ +Y T T T+ GV +
Sbjct: 595 VIREFIYPTEFDPPQIPQSVGATTTTGGVGLGSSTAAFPVTPTTPTAFEMRPVGVRMEVD 654
Query: 320 PTVLSPG-RIGLRIQTEVSE------------------------PVIGVNAGDMPSYRVR 354
P + G I L + EV+E + N + P + R
Sbjct: 655 PVIGPDGYTIDLNLAPEVTEFEGFINYGSPINTASTDALGNPTTVTLTENRIEQPVFSTR 714
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
K T V + G T+ + GL+++D+Q +++ +P+L IPILG LF++ + + + I
Sbjct: 715 KVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDIPILGRLFQSKAEDHFKRNLMIFV 774
Query: 415 TPFLVKP 421
T L+ P
Sbjct: 775 TAKLIDP 781
>gi|162457505|ref|YP_001619872.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce
56']
gi|161168087|emb|CAN99392.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce
56']
Length = 864
Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats.
Identities = 52/285 (18%), Positives = 94/285 (32%), Gaps = 54/285 (18%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG---------------- 236
QV ++ I +V G + +G + + +GG
Sbjct: 448 RRQVFIEAVIMDVNVSRSLDFGIGYHAGAPFNGLNPDDSVVYGGNNIRQSVIGLPAQLGA 507
Query: 237 ------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
G + + + +F VLHAL + LA P + A +A + G
Sbjct: 508 LALGIKGPAITGSNNILGTGISIPAFGVVLHALAQDGDSNVLATPHILATDNVAAEISIG 567
Query: 291 GQHLYKTVSSSTGATS-------------------------------VTTHDYGVVLHFT 319
+T G D G +
Sbjct: 568 QNIPLQTNVGGGGLNQLASLAGGAGAAAGGLGGLAGLLGGLGGVGGTAARQDVGTKIKVV 627
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
P V ++ L + E+S+ + R A TT+ + T+V+ GL++D +
Sbjct: 628 PHVNDSDQVRLELSEEISDAGAPLEGALGAIPINKRTASTTLVVRDQQTVVIGGLMRDGM 687
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
+ IP+L IP+LG LFR + +T + + TP++++
Sbjct: 688 TTSETKIPVLGDIPVLGFLFRQRVKTKTKTNLLLVLTPYVIRDQD 732
>gi|311693304|gb|ADP96177.1| LOW QUALITY PROTEIN: pilus (MSHA type) biogenesis protein MshL
[marine bacterium HP15]
Length = 570
Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats.
Identities = 53/267 (19%), Positives = 102/267 (38%), Gaps = 30/267 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA--------AD 233
++ + + + QV L+ I E+ + Q G S S+S + S A
Sbjct: 265 EEYLRRTELIMQRQVILEAKILEIALNEGYQQGINWSDIQSASSITASDGLPEDFTAQAL 324
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
G + + F ++ L + ++ L+ P ++ ++ Q A G
Sbjct: 325 AGQVIQTSDIGGLFSASVRAGDFTGLIELLGKQGNVQILSSPRISTVNNQKAVIKVGTDE 384
Query: 294 LYKT-------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
+ S++ + +T G+ L TP + G I L + VSE
Sbjct: 385 FFCHRYDFDDNNSAVTATDSTSTSVELTPFFSGISLDVTPQISESGVITLHVHPSVSEVT 444
Query: 341 IGVNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ S VR+ D+ + SG +V+ GL+++ + +P S+I
Sbjct: 445 DQEKVITIGERDVTLPLASSTVRETDSVIRAESGQIVVIGGLIQNSSEDNNSAVPFFSEI 504
Query: 392 PILGALFRNSRFNREETEIFIAATPFL 418
P++G LF+ RF ++E+ I P +
Sbjct: 505 PLVGELFKQRRFQSRKSELVILLRPVV 531
>gi|51594667|ref|YP_068858.1| type III secretion protein EscC/SpiA, outer membrane pore [Yersinia
pseudotuberculosis IP 32953]
gi|51587949|emb|CAH19552.1| possible type III secretion protein EscC/SpiA, outer membrane pore
[Yersinia pseudotuberculosis IP 32953]
Length = 523
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%)
Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
+ V L G+V +++ + + L+ + S+ N + I
Sbjct: 221 QYRDQNVRLPGLVSVLRELNQGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQAN 280
Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
Q+ + VTI +V + Q+G S + S G SF + F
Sbjct: 281 MPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNST----F 336
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ + D +F L+AL++ + R L++P++ ++ A K
Sbjct: 337 AKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKL- 395
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354
+ + G +L TP ++ G + + + + + +P R
Sbjct: 396 -QGEKVAKLESVTSGSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNS 454
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T L G +++L G ++D + + IPLL IP+LG LFR++
Sbjct: 455 DISTQATLQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 514
Query: 415 T 415
Sbjct: 515 K 515
>gi|22124429|ref|NP_667852.1| secretin [Yersinia pestis KIM 10]
gi|45440265|ref|NP_991804.1| type III secretion protein [Yersinia pestis biovar Microtus str.
91001]
gi|150260696|ref|ZP_01917424.1| possible type III secretion protein [Yersinia pestis CA88-4125]
gi|165926705|ref|ZP_02222537.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Orientalis str. F1991016]
gi|167402490|ref|ZP_02307945.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|218927462|ref|YP_002345337.1| putative type III secretion protein [Yersinia pestis CO92]
gi|229836509|ref|ZP_04456675.1| possible type III secretion protein [Yersinia pestis Pestoides A]
gi|229840118|ref|ZP_04460277.1| possible type III secretion protein [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842199|ref|ZP_04462354.1| possible type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229904060|ref|ZP_04519173.1| possible type III secretion protein [Yersinia pestis Nepal516]
gi|294502332|ref|YP_003566394.1| possible type III secretion protein [Yersinia pestis Z176003]
gi|21957215|gb|AAM84103.1|AE013653_3 putative secretin [Yersinia pestis KIM 10]
gi|45435121|gb|AAS60681.1| possible type III secretion protein [Yersinia pestis biovar
Microtus str. 91001]
gi|115346073|emb|CAL18941.1| possible type III secretion protein [Yersinia pestis CO92]
gi|149290104|gb|EDM40181.1| possible type III secretion protein [Yersinia pestis CA88-4125]
gi|165921328|gb|EDR38552.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Orientalis str. F1991016]
gi|167048140|gb|EDR59548.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|229679830|gb|EEO75933.1| possible type III secretion protein [Yersinia pestis Nepal516]
gi|229690509|gb|EEO82563.1| possible type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696484|gb|EEO86531.1| possible type III secretion protein [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229706193|gb|EEO92201.1| possible type III secretion protein [Yersinia pestis Pestoides A]
gi|262360412|gb|ACY57133.1| possible type III secretion protein [Yersinia pestis D106004]
gi|262364362|gb|ACY60919.1| possible type III secretion protein [Yersinia pestis D182038]
gi|294352791|gb|ADE63132.1| possible type III secretion protein [Yersinia pestis Z176003]
gi|320013878|gb|ADV97449.1| putative type III secretion protein [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 523
Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%)
Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
+ V L G+V +++ + + L+ + S+ N + I
Sbjct: 221 QYRDQNVRLPGLVSVLRELNQGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQAN 280
Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
Q+ + VTI +V + Q+G S + S G SF + F
Sbjct: 281 MPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNST----F 336
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ + D +F L+AL++ + R L++P++ ++ A K
Sbjct: 337 AKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKL- 395
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354
+ + G +L TP ++ G + + + + + +P R
Sbjct: 396 -QGEKVAKLESVTSGSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNS 454
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T L G +++L G ++D + + IPLL IP+LG LFR++
Sbjct: 455 DISTQATLQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 514
Query: 415 T 415
Sbjct: 515 K 515
>gi|320355296|ref|YP_004196635.1| type II and III secretion system protein [Desulfobulbus propionicus
DSM 2032]
gi|320123798|gb|ADW19344.1| type II and III secretion system protein [Desulfobulbus propionicus
DSM 2032]
Length = 586
Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats.
Identities = 56/315 (17%), Positives = 106/315 (33%), Gaps = 35/315 (11%)
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVT 197
D V ++ +A + + + + +N L + QV
Sbjct: 272 AKGDAVGSEEKTMSMGAKDKASFVIDRNVGLITVTAKPSLLKVVDDYINNLKKSLYKQVN 331
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--------VSEGGDFSVKG 249
++ I EV +IG S S + G+ F +
Sbjct: 332 IEAKIIEVYLQDNSKIGLDWSSVLKDFQISATTFFGNNGQVHPRTTADPDDFSNTFVSRV 391
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
+ +F+ L+ALE LA P LT ++GQ A + G Y + +
Sbjct: 392 EIPSLTFDVFLNALEEQGDTHVLANPKLTVLNGQPAIISVGKDVAYIKSVTREKDSDTED 451
Query: 310 HDY---------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-------------- 346
Y G+ L ++L ++ L + ++ + G
Sbjct: 452 ITYSAEVGNVVQGIALGVMASILDENKVILHLTPITTDLANATSDGEVPITTIGEGETAM 511
Query: 347 --DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+P +VR+ T VE+ +G +++ GL+ + P L IP++ LF
Sbjct: 512 SLGLPQVKVREMSTMVEVENGEMLIIGGLIDSIEGKTGAFAPGLGSIPVVKYLFGVEEKT 571
Query: 405 REETEIFIAATPFLV 419
++ E+ I TP ++
Sbjct: 572 LQKRELVILLTPRII 586
>gi|332295419|ref|YP_004437342.1| type II and III secretion system protein [Thermodesulfobium
narugense DSM 14796]
gi|332178522|gb|AEE14211.1| type II and III secretion system protein [Thermodesulfobium
narugense DSM 14796]
Length = 630
Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats.
Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 13/254 (5%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ +++++ L+ + Q+ ++V + E+ +KQ+G Q +
Sbjct: 382 APEDKQKIAEELLQNLDKPLK-QIEVQVMVIELDNQGIKQLGIQW------PNNIQFSGN 434
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
G + S + L+A + L++P + A+ GQ + +G +
Sbjct: 435 ATGTRTYGTSKSKSSVYTGTISNITASLYAQLNNNNAKILSDPRILALDGQDSYVFAGDK 494
Query: 293 HLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAG 346
VSS+TG T + GV+L TP + G I + + VS V +
Sbjct: 495 LYIPQVSSATGGNVTYTTNEYDVGVLLKITPFIGENGEITIHVTPSVSAFNGDVTQLQIN 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ +R+AD T + G T + GL+ D+ ++ +P L +P+LG +FR +
Sbjct: 555 QPFTTTIREADVTARVKDGQTFYIGGLISDEQRKQTISVPGLGNMPLLGPMFRYDYNMKS 614
Query: 407 ETEIFIAATPFLVK 420
TE+ TP +VK
Sbjct: 615 RTEVIFLLTPHIVK 628
>gi|87311311|ref|ZP_01093433.1| general secretion pathway protein D (precursor) [Blastopirellula
marina DSM 3645]
gi|87286051|gb|EAQ77963.1| general secretion pathway protein D (precursor) [Blastopirellula
marina DSM 3645]
Length = 1199
Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/323 (21%), Positives = 125/323 (38%), Gaps = 53/323 (16%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
Q ++ + + ETF + + K++ L+ V+++V IA+VR
Sbjct: 742 TSSFQQVAREVIVVPETFSNSLIITATPRYFKQIVKIVEELDAR-PPMVSIQVLIADVRL 800
Query: 208 DILKQIGFQHSITGS------------------------------------SSGPSKSFA 231
++++GF+ + S S+ S+ +
Sbjct: 801 GKIEELGFEFGLQDSLLFDRSTVSSGQLDPGYNFNNAALGNSSSAASLATASAVGSQGLS 860
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G+ G S ++ AL++ + LA P + + Q A G
Sbjct: 861 DLGLGRTNPALGYGGFVFSAASESVNVLIRALQQDNRMEVLARPHVMTMDNQPAFIQVGQ 920
Query: 292 QHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
+ Y V++ S+T + GV+L+ P + G + + +Q E SE + +
Sbjct: 921 RVPYITDTQVTNQGTVNSITLENTGVILNVIPRISPDGMVVMYVQAERSEVGNEADGIPI 980
Query: 349 -----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
P + A TTV SG TIVL GL++ + +PLL IP++G+L
Sbjct: 981 SINQNGDVIRAPRINTQTATTTVSARSGQTIVLGGLIQKRTTVVSRRVPLLGDIPVVGSL 1040
Query: 398 FRNSRFNREETEIFIAATPFLVK 420
FR F+ + +E+ I TP +V
Sbjct: 1041 FRYDSFDGDRSELMIILTPTVVD 1063
>gi|331004879|ref|ZP_08328296.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989]
gi|330421333|gb|EGG95582.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989]
Length = 553
Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats.
Identities = 60/275 (21%), Positives = 114/275 (41%), Gaps = 23/275 (8%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
++ ++ ++ + ++ + QV ++ I EV+ Q G +
Sbjct: 254 VAIVTAMPKELAAVRRFLENTRLSVKRQVIIEAKILEVQLSKNHQTGVNWNAINGQLLLG 313
Query: 228 KS---FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
K+ F +SEG ++ T+L LE ++ L+ P ++ ++ Q
Sbjct: 314 KNASDFDTGVTINEISEGVGEVFSSLIRISDTSTLLSLLETQGEMQVLSSPRVSTVNNQK 373
Query: 285 ASFTSGGQHLYKTVSS-----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
A G + T S S+ +++ G+ L TP + G + L I
Sbjct: 374 AVIRVGTDQFFVTGISNSTISNASSTTSSPDIELSSFFSGISLDVTPQISDEGDVILHIH 433
Query: 334 TEVS-------EPVIGVNAGDMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+S V+G +A +P +R++D+ V+ SG IVL GL+++ I +
Sbjct: 434 PVISTVTEEQKNIVVGDSAFSLPLALRDIRESDSIVKAKSGQVIVLGGLMQERINHVGGK 493
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P LS IP+ G LF ++ R ++E+ I P +V
Sbjct: 494 RPGLSDIPVAGGLFNSNTDIRSKSELIILLKPTVV 528
>gi|262284505|gb|ACY41042.1| VscC [Vibrio alginolyticus]
Length = 624
Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats.
Identities = 59/332 (17%), Positives = 116/332 (34%), Gaps = 43/332 (12%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
+ + L+R ++ +V S V + ++ + +
Sbjct: 210 TITVPGIASVLKRVVSGVQTQVTSAS-----SKEVTSSDKPVKSNKTASVH-------GG 257
Query: 177 ANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQHS 218
A ++ +N + + Q ++V +I ++ + L Q+G
Sbjct: 258 ATVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWR 317
Query: 219 I---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272
G++ D V+ G + K +LD + + LE + + +
Sbjct: 318 AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVV 377
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----R 327
+ PTL A + K V T A + YG +L P ++
Sbjct: 378 SRPTLLTQENVEAVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPE 435
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I L + E + D+PS R + T + G ++++ G+ +D++ +PL
Sbjct: 436 INLSLHLEDGAKIADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPL 495
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L IP LGALFR++ + T P +V
Sbjct: 496 LGDIPYLGALFRSNTNTKRRTVRMFILEPRIV 527
>gi|89902101|ref|YP_524572.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
gi|89346838|gb|ABD71041.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
Length = 614
Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats.
Identities = 65/384 (16%), Positives = 119/384 (30%), Gaps = 64/384 (16%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +V G R++ S +A ++ + R K + IA E QV
Sbjct: 238 ELTEAVKGLVGAGPGRSVVISPQAGIMAVHAMPDELRQV------DKFLKAAQIAVERQV 291
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------------- 240
L+ I EV Q G S + G + + G +
Sbjct: 292 MLEAKIVEVELRDGYQSGIDWSALKNGGGSTGAMGVIGGNTSATTSSNTLVRGVQSNLPG 351
Query: 241 ---------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
G F+ VL LE ++ L+ P + ++ Q A
Sbjct: 352 FSAGSALLADGISLPAAGAGLFGLAFATDGFQAVLGFLETQGDVQILSSPRIATLNNQKA 411
Query: 286 SFTSGGQHLYKTVSS---------------STGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
G + + T S + + ++T G+ L TP + +I L
Sbjct: 412 VLKVGAEDFFVTNVSGGTTSSVTTGSTATLTMPSITLTPFFSGISLDVTPQIDEGTKIML 471
Query: 331 RIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ V+ G + S + + DT V + G + + GL++ + +
Sbjct: 472 HVHPSVTTVSERAKQIDLGSAGNYVLPLASSSMNETDTLVRIQDGNIVAIGGLMQIESNR 531
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
G+P S +P+ LF N + E+ + P +++ +D D
Sbjct: 532 KSSGLPGTSDVPLFSTLFGNHANTGRKKEVVVLIKPTIIR--TAQDWEAQTRRTRAALDD 589
Query: 441 KAFFFNRVNKIYGPKEASEVEGQN 464
RV +I G +
Sbjct: 590 IDSVRARVIRIDGTVQEGAPRTPA 613
>gi|152993261|ref|YP_001358982.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1]
gi|151425122|dbj|BAF72625.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1]
Length = 536
Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats.
Identities = 55/310 (17%), Positives = 111/310 (35%), Gaps = 55/310 (17%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
GMV +++ ++ + +N+L+ + QV + V I V+
Sbjct: 227 AGMVTVTGTARQINRVA------------------RYINVLSRQIKTQVLIDVRILAVKF 268
Query: 208 DILKQIGFQHSITGSSSGPSK------------------SFAADFGGKFVSEGGDFSVKG 249
D + G S + + D ++ + S+
Sbjct: 269 DDSRTTGVDWSQLYGLQNFAVDSLIMAQKNVASYTFDKLNGIQDTAFGPDTQPRNGSLVQ 328
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----------TVS 299
+ + + V+ L ++ ++ P + ++ Q A + G + YK +
Sbjct: 329 LTGKANINEVVKFLATQGDVKAISSPRVMTLNNQPAMISVGKELFYKLKSTSALGTGNNA 388
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPS 350
++ SV + G++L TP + + G I L+I +SE + + P
Sbjct: 389 NTAQGESVDSVFAGILLDITPEIGNNGIITLKINPSISETIEDIQTQKNTVTGSRDMPPD 448
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
R+ + V++ G +L GL+ IPLL IP+L F++ E+
Sbjct: 449 LIRRQIASVVKVKDGEHAILGGLITSSTGTKVNKIPLLGDIPLLEYAFKHEEKINRVEEL 508
Query: 411 FIAATPFLVK 420
+ TP +VK
Sbjct: 509 VLIITPHIVK 518
>gi|332750364|gb|EGJ80775.1| transport protein hofQ domain protein [Shigella flexneri 4343-70]
Length = 170
Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats.
Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 2/166 (1%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
+ L ALE+ + +A P L A Q AS + Y+ S +GATSV + +
Sbjct: 2 LDLELSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQVSSGESGATSVEFKEAVLG 61
Query: 316 LHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ TPTVL GRI L+ I V V+ G++ + ++ +T VE+ SG T+ L G+
Sbjct: 62 MEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGI 121
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ ++ +PLL IP G LFR+ E E+ + TP LV
Sbjct: 122 FTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 167
>gi|167041767|gb|ABZ06510.1| putative bacterial type II and III secretion system protein
[uncultured marine microorganism HF4000_010L19]
Length = 536
Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats.
Identities = 63/389 (16%), Positives = 133/389 (34%), Gaps = 42/389 (10%)
Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
IL + D+ V++ VHSP + + ++L I +
Sbjct: 164 QTILDMRTLGADIDVANGII---RVHSPEKL---------TSQEEFKSARAEVLKKKIQL 211
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
E+ + + + R S + + + + + E +
Sbjct: 212 EQSVEPILAEIFRLYYVSPTQAKQTLEDLFVTQGAEGASTLSNIKITVEDTTRSIIVRGH 271
Query: 177 ANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSF 230
V+ ++I + QV ++ I E D K++G + + + S
Sbjct: 272 KPDLDVIDAVLREIDIKTK-QVLIEAFIVEATSDFQKRLGSRIAAMQKQVRGDDVVTISG 330
Query: 231 AADFGGKFVS--------------------EGGDFSVKGVLDRFSFETVLHALERATAIR 270
G S + L + + + AL+
Sbjct: 331 ITGGGNAATSAADVALGAAAGTLAANAITGGTSGIGILKQLGARALKLEIEALQSLGISN 390
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
++ P++ ++ Q A T G + ++ G T+ + + L TP+V+ G I L
Sbjct: 391 IISSPSVFTLNNQEAKITQGTE--IAYQVTADGTTTTEFKEAALSLVVTPSVIGDGNILL 448
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
IQ ++ V D P+ + + T + + G +V+ G+ + K P +SK
Sbjct: 449 DIQVN-NDSPTTVAGSDEPAIKTNEIKTKLLVSDGDIVVIGGIKINTATDTKTATPGMSK 507
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
+P++G LF+ + + E+ I P ++
Sbjct: 508 LPVVGNLFKGKAVSDKMDELLIFIAPRVI 536
>gi|154147986|ref|YP_001406614.1| type II and III secretion system protein [Campylobacter hominis
ATCC BAA-381]
gi|153803995|gb|ABS51002.1| type II and III secretion system protein [Campylobacter hominis
ATCC BAA-381]
Length = 541
Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats.
Identities = 58/350 (16%), Positives = 120/350 (34%), Gaps = 70/350 (20%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
+++ +G + + + + + L + + +N + E QV+L V+I
Sbjct: 176 SILNNGTEKYVAIAPIINQNAG--LVTVTGMKSQIARVDAYINKMKKRLERQVSLDVSIV 233
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------------------- 238
V G S + +
Sbjct: 234 AVELSNSYTTGIDWSKFQLGFNTYLNGDPSTPTSYSFGNRNKVGQVTSLPQIEDIKDKDG 293
Query: 239 ------------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
S+ G F+ + +++ LE + ++
Sbjct: 294 KILFSRPTSLGTWDYKEKSMGSVKASDSNGVWAIGANLNFNIDGMINFLETKGKTKIISS 353
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDY----GVVLHFTPTVL 323
P +T ++ Q A + G Y+ ++T G TSVT +Y G++L+ P +
Sbjct: 354 PKVTTMNNQPAIISVGDVINYRIQENTTSGGQTDAGTTSVTYTNYSTFIGILLNILPEIS 413
Query: 324 SPGRIGLRIQTEVSEP--------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
RI LR+ +S+ ++ P +K + V + G T++L GL+
Sbjct: 414 DDNRIMLRVNPSLSDFKYQADREATAQLDRVMAPDTIQKKISSVVWVDDGDTVILGGLIG 473
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+ + + +P LS IP++G LF+++ TE+ TP ++ +
Sbjct: 474 QNKGKDNKNVPFLSDIPLIGNLFKSTADRLTTTELVFVITPRIIDNTDTK 523
>gi|312879791|ref|ZP_07739591.1| general secretion pathway protein D [Aminomonas paucivorans DSM
12260]
gi|310783082|gb|EFQ23480.1| general secretion pathway protein D [Aminomonas paucivorans DSM
12260]
Length = 648
Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats.
Identities = 67/313 (21%), Positives = 118/313 (37%), Gaps = 36/313 (11%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
++ ++V+ L+I QV L+ +AEV L Q G + G FA
Sbjct: 333 SAPPEQYAAIERVLEQLDIQ-PKQVLLRGLVAEVNLTKLDQAGVDWAAWGGGLTGDGVFA 391
Query: 232 ADFGGKFVS----------------------EGGDFSVKGVLDRFSFETVLHALERATAI 269
S G + + + L R AI
Sbjct: 392 GQVQMGNSSIPPMFLEWFRDLTKHDTVTYDRFGNAITTTVYDSKALVYGYVKLLNRFDAI 451
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGVVLHFTPTVL 323
L+ P + +S G S D G++L TP +
Sbjct: 452 NVLSMPRIMCTDNLESSLQVGQVIPQLKGKLSEVNNPSAVQSSYEYKDTGLILKVTPHIR 511
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
S + L I+ + E V+ + D P+ R+ T V + +G TI+L G++K+ + +K
Sbjct: 512 SGNLVALEIEQRIEE-VLTASTVDTPTTTKREIKTNVLVENGQTIILGGIIKEAEKSMKS 570
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV----KPVAMRDLSRPDDHYSVEDD 439
+P LS IP+LG LF ++ RE+ ++ I TP+++ + V + D +
Sbjct: 571 RVPGLSYIPLLGNLFTSTVKQREKVDLMIFLTPYILENPRQAVDVSVQISSGDQVPSAAE 630
Query: 440 AKAFFFNRVNKIY 452
A+ R++K++
Sbjct: 631 AETTL--RLDKLF 641
>gi|187250988|ref|YP_001875470.1| type II secretion system [rpteom [Elusimicrobium minutum Pei191]
gi|186971148|gb|ACC98133.1| Putatively involved in type II secretion system [Elusimicrobium
minutum Pei191]
Length = 527
Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats.
Identities = 64/281 (22%), Positives = 99/281 (35%), Gaps = 44/281 (15%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ ++ L+I QV ++ I EV + +IG + T + A +V
Sbjct: 246 ENILAELDIK-PPQVLIEAQIIEVNKSSGLEIGLSYGGTDGTIFKFTGPARGVDIDYVKG 304
Query: 242 GGDFSVKGVL-----------------------------------DRFSFETVLHALERA 266
G + D SF VL +L
Sbjct: 305 NGVSGWGYIFPPAGTGTGGSSGGDSGGGSTDGSGGNSNSPKDAFLDFSSFSIVLKSLLTR 364
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQH---LYKTVSSSTGATSV-----TTHDYGVVLHF 318
+ L +P + I+ Q A S +S +TG+T+V G+ L
Sbjct: 365 GEAKYLGKPKVVTINNQPAVIESTRDAAVGFASNLSGNTGSTNVVSQTAERKTVGLTLKV 424
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
TP V G I L I+ S + R A T V + +G T+VL GLL
Sbjct: 425 TPQVNKEGYITLLIEPSYSSVANSAVSDGTKDTLNRSASTLVRVKNGQTVVLGGLLSSRE 484
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+PLL IP++G LF +E T++ I TP ++
Sbjct: 485 ILEDRKVPLLGDIPLIGWLFTQRSTTKETTDMVIFVTPTIL 525
>gi|102227325|gb|ABF70182.1| AscC [Aeromonas hydrophila]
Length = 614
Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats.
Identities = 50/314 (15%), Positives = 100/314 (31%), Gaps = 19/314 (6%)
Query: 116 IERDIAHLEMTLRRFIADSNIRV---EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
+ + + L R ++D+ +++ E + G D L +
Sbjct: 212 TDVEAPGVATILSRLLSDAGVQMVNGEGTKGSTSHSGQAIVQADPSLNAVLVRDAPERMA 271
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
++ K + +A I ++ + L Q+G + + +
Sbjct: 272 MYGKLIAALDKPSARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVIIK 323
Query: 233 DFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
G S+ ++ LE + ++ PTL A
Sbjct: 324 TTGDRKGIEGGAALGSLVDSKGLDYLLARVNLLENQGNAQVVSRPTLLTQENTQAVIDHS 383
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-G 346
+ K S + YG +L TP V+ G + L + E +
Sbjct: 384 ETYYVKI--SGERVAELKGITYGTMLRMTPRVIQLGDRPEVSLSLHIEDGNQKPNSSGLD 441
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+P+ DT + G ++++ G+ +D++ + +P L IP LGALFR+
Sbjct: 442 GIPTISRTVVDTIARVGHGQSLLIGGIYRDELSESLSKVPFLGDIPYLGALFRSKESQTR 501
Query: 407 ETEIFIAATPFLVK 420
P L+
Sbjct: 502 RQVRLFIIEPRLID 515
>gi|115351491|ref|YP_773330.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
gi|115281479|gb|ABI86996.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
Length = 812
Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/349 (19%), Positives = 133/349 (38%), Gaps = 35/349 (10%)
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V T+ ++ +A + + + L D + LR+ I ++ V+
Sbjct: 240 KVLDRHTLLVYPSQPEKA-----RNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVD 294
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+ VV+ TIQ + ++V+ L+I + VTL
Sbjct: 295 ERVNAVVMRDTPETIQVA------------------------ERVVMGLDIPQSE-VTLD 329
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
V + EV + +G Q+ + + V +
Sbjct: 330 VQVLEVNMNDSLDLGVQYPGKIQFNALGGVEGGALTLGDLLRLNRDRVGVSSESGGLALA 389
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLH 317
+ L++ +TLA P + + + A+ G + T +++ G SV+ D G++L
Sbjct: 390 IDLLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVTTTNANGVVTESVSYQDVGLMLK 449
Query: 318 FTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
P + + +++ EVS S R A+T + +G T +LAGL+
Sbjct: 450 VEPRISLNEEVSVKVNMEVSSILTKETTKTGLVAYSLGTRNAETLMTAKNGETQILAGLV 509
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
K + G+P +S +P+LG LF ++ + E +EI + TP + + +
Sbjct: 510 KRNESDSVAGLPGVSGLPVLGRLFGSNGRSNERSEIVLLITPHIERNLD 558
>gi|163883892|gb|ABY48121.1| RcpA [Yersinia ruckeri]
Length = 304
Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 62/295 (21%), Positives = 124/295 (42%), Gaps = 25/295 (8%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ + + + I+ V ++ + S AD + ++ ++ K G A L
Sbjct: 31 HAEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKK 90
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
K + + + +++ I+ + +R DS I + + + +L G +T + + ++
Sbjct: 91 NKPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVA 150
Query: 166 TFLSQ----SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
+ + Y S + N + I +QV +K+TIAEV +D IG S G
Sbjct: 151 NAIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIG 210
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ SG + G T++ A+ + R LAEP L+ +S
Sbjct: 211 NVSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLS 251
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
G++ASF GG+ + + +T +V+ ++G+ L+ V RI +++ EV
Sbjct: 252 GETASFLVGGELPIVSTTQNT--INVSYKEFGIKLNIGAKVSESKRIRVKLDEEV 304
>gi|262363857|gb|ACY60577.1| outer membrane secretin precursor [Yersinia pestis D106004]
Length = 470
Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
E + L+R ++D+ I+ V + + Q + RA ++ S
Sbjct: 68 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 120
Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S +++ L++ + ++V +I ++ D L ++G + + +
Sbjct: 121 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 180
Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G S G S+ ++ LE + + ++ PTL A
Sbjct: 181 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 240
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345
+ K + YG +L TP VL+ G I L + E ++
Sbjct: 241 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 298
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P+ DT + G ++++ G+ +D++ +PLL IP LGALFR
Sbjct: 299 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 358
Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
T P ++ L+
Sbjct: 359 RRTVRLFIIEPRIIDEGIAHHLAL 382
>gi|253996576|ref|YP_003048640.1| type II and III secretion system protein [Methylotenera mobilis
JLW8]
gi|253983255|gb|ACT48113.1| type II and III secretion system protein [Methylotenera mobilis
JLW8]
Length = 583
Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats.
Identities = 64/322 (19%), Positives = 112/322 (34%), Gaps = 49/322 (15%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L+G+V + V L + + + +NL+ ++ E QV L+ I V+
Sbjct: 234 LNGIVGNENGRRVIVNLQSGVIVVRAMPNEIRNV-ESFLNLMQVSIERQVILEAKILNVQ 292
Query: 207 RDILKQIGFQHSITGSSSGPSK--------------------------SFAADFGGKFVS 240
+ Q G S+ G S + S +
Sbjct: 293 LNDQSQSGVNWSVFGRSGSNTGIVGNINANTRLSSSGNGNLVSGDLTASTGTVLSNAATT 352
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G L +F T+L LE ++ L+ P +++I+ Q A G + T S
Sbjct: 353 ALGGPLFAIALQGANFSTLLSFLETQGDVQVLSSPRISSINNQKAVLKVGTDEFFVTGIS 412
Query: 301 STGATSV-----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341
S SV G+ L TP + I L + +S+
Sbjct: 413 SNTTASVGATTTVPEVILQPFFSGITLDVTPQIDKDDNIILHMHPSISQVSTVNKQVTLG 472
Query: 342 -GVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
++P S + + D+ V G IV+ GL+ + K +P L + +GA F
Sbjct: 473 GTAGQINLPLASSNISETDSIVRTRDGRVIVIGGLMTESASSTKSKVPGLGDVKGVGAAF 532
Query: 399 RNSRFNREETEIFIAATPFLVK 420
R ++ +TE+ I +V+
Sbjct: 533 RQQSASKTKTELVILLKASVVQ 554
>gi|74316782|ref|YP_314522.1| general secretion pathway protein D [Thiobacillus denitrificans
ATCC 25259]
gi|74056277|gb|AAZ96717.1| general secretion pathway protein D [Thiobacillus denitrificans
ATCC 25259]
Length = 554
Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats.
Identities = 54/289 (18%), Positives = 102/289 (35%), Gaps = 40/289 (13%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------- 217
++ + +A E QV L+ I EVR Q G
Sbjct: 240 KTPPRTMREVERFLKATALAVERQVMLEAKIIEVRLSDGFQTGINWAALHEGRHKYSSGA 299
Query: 218 -----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
++ ++ S G S SF +++ LE A+ L
Sbjct: 300 DAGNFNLVTGAASGSLGSVLGSGLPAASGTSGGIFGLAFQTKSFAALINFLETQGAVHVL 359
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSST-----------GATSVTTHDYGVVLHFTPT 321
+ P + A++ Q A G + T S+T + ++ G+ L TP
Sbjct: 360 SSPRIAALNNQKAVLKVGTDDFFVTNVSTTSNTGGAGTTTTPSVTLQPFFSGIALDVTPQ 419
Query: 322 VLSPGRIGLRIQTEVSEPV--------IGVNAGDMPSYR--VRKADTTVELPSGGTIVLA 371
+ GRI L ++ VS + +P V + D+ V++ G + +
Sbjct: 420 IDERGRITLHVRPSVSVVTEKIKNIDAGAAGSLTLPLASSAVSETDSVVQVEDGRIVAIG 479
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G++K +P + ++P+LG F N+ + ++E+ I P ++
Sbjct: 480 GMMKQSFDDSANRVPAIGRVPLLGYFFGNTARSASKSELVILIKPTVID 528
>gi|309389153|gb|ADO77033.1| type II and III secretion system protein [Halanaerobium praevalens
DSM 2228]
Length = 438
Score = 152 bits (385), Expect = 9e-35, Method: Composition-based stats.
Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 19/239 (7%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ +K + E+ R +K++G S + G +
Sbjct: 175 KQIMIKARVEEISRTEIKELGINPSQLTELK-----IIKNEAGDLEEL-----------K 218
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHD 311
++ L +L LA P+L + + A G Q K + T ++ +
Sbjct: 219 PNWPDTLRSLNERGLSNILANPSLMTLDRKKAKLIIGDQIPVKLERVESEKTVSTINYIE 278
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
G+VL F P +++ + L I+ V+ V A +P+ R A+TTV L + T+ +
Sbjct: 279 AGIVLEFLPKIINEKEVLLEIKPSVNSL-GQVLADGLPAVNSRSAETTVILENDQTLAIG 337
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
GL+K D + + +P+L+ +P+LG LF N ETE+ I TP +++ P
Sbjct: 338 GLIKKDELKSIKEVPILADLPLLGKLFSAEEKNDIETELIIFITPKIIESKTEIKTKTP 396
>gi|303248632|ref|ZP_07334887.1| type II and III secretion system protein [Desulfovibrio
fructosovorans JJ]
gi|302489982|gb|EFL49906.1| type II and III secretion system protein [Desulfovibrio
fructosovorans JJ]
Length = 629
Score = 152 bits (385), Expect = 9e-35, Method: Composition-based stats.
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 2/223 (0%)
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G + G + + G + G + G + E L AL ++ LA
Sbjct: 395 GSSGNGFGLNYPALTNSLTTASGLGAAGAGVNFLFGKIGENVLEAQLTALAEDNKVKILA 454
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
PT+T + Q+A +G Y + S + T+V + + L P V+ + ++I
Sbjct: 455 SPTITTMENQTAFVENGMDVPYTSTSQNG--TNVQFANATLRLEILPHVVDGTNLRMKIT 512
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
+ + P R+ + + + TIV++GL++D + G+P L IP
Sbjct: 513 VKDDQVDTSRTVDGNPYIYKRETQSNLVVEDRETIVISGLVRDTVSDGNSGVPFLRDIPG 572
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
LG F++ + E ++ I TP ++K + + D
Sbjct: 573 LGWAFKSKNSSVEREQMLIFITPIILKEKPIAPVPPVADRVDP 615
>gi|171059300|ref|YP_001791649.1| type II and III secretion system protein [Leptothrix cholodnii
SP-6]
gi|170776745|gb|ACB34884.1| type II and III secretion system protein [Leptothrix cholodnii
SP-6]
Length = 662
Score = 152 bits (385), Expect = 9e-35, Method: Composition-based stats.
Identities = 67/434 (15%), Positives = 152/434 (35%), Gaps = 63/434 (14%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
+ + K P + A + + + + I+I L++ + + + V + +
Sbjct: 180 AGLEAAFKRPVTLQFRDANVKMVFEALSRTANINIILDRDVRADLR---TTIYVQNASVE 236
Query: 78 DVV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
D + V + T++++ + + + L + A +
Sbjct: 237 DTLDLILLQNQLDRRVLNGNTIFVYPATPAK-----QREYNELKVRTFQLSNIEAAQMAT 291
Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
++ + ++ + S+++V+ +I +++ ++ +
Sbjct: 292 IIKTMLKTRDVVTDAKSNSLVMRDTAASIAVAEKL--IAANDVPDPEVVLEVQVLEV--- 346
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
D L IG + + PS + S+
Sbjct: 347 --------------------SSDRLSNIGLRFPDAFTVGTPSTATTVGDLRALTSDNLTA 386
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--------HLYKT 297
S + + T LA P + A + + A G + ++
Sbjct: 387 SSLSLGLNLL--------LQDTDTNILASPRIRARNKEKARILVGDKVPVITNLITPQQS 438
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRK 355
SS S+ D G+ L P V + G +G+++ EVS I ++G R
Sbjct: 439 GQSSVITGSIQYVDVGIKLEVEPQVYADGDVGIKVNLEVSNIAKTITTSSGVAYQIGTRN 498
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
A T + L G T ++AGL+ D + +P L ++P++G LF ++ + ++EI ++ T
Sbjct: 499 ATTALRLHDGETQMMAGLINDQDRSTASKLPGLGQLPVIGRLFTSTNASGGKSEIVLSIT 558
Query: 416 PFLVKPVAMRDLSR 429
P +V+P + +
Sbjct: 559 PRIVRPQSTPEARL 572
>gi|90416464|ref|ZP_01224395.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
proteobacterium HTCC2207]
gi|90331663|gb|EAS46891.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
proteobacterium HTCC2207]
Length = 754
Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 66/330 (20%), Positives = 120/330 (36%), Gaps = 60/330 (18%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQ--SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
G T S+R + + + + ++ K++++ +++ + QV ++ I
Sbjct: 422 EGNATTTILSERGSAIVDERTNTIILTDTEDKINAFKRLIDEIDVPIK-QVLIEARIVIA 480
Query: 206 RRDILKQI-------GFQHSITGSSSGPSKSFAADFGG---------------------- 236
D K++ G + G+ P F G
Sbjct: 481 NTDFKKELGVTWGLAGIEKLTGGTIGSPFGDKTLGFSGRRSGLTPGAGVKETFTYSADEI 540
Query: 237 --------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
+ G FS+ + D F + L ALE
Sbjct: 541 ETDDDGITTYTRNYDIGLGDSLAVDLGVDNPTGSFSLGYLTDNFLIDLELSALESDGFGE 600
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
+++P + Q A SG + Y+ +SS GATS+ + + L TP + RI +
Sbjct: 601 IVSQPKVLTGDKQQAVIKSGTEIAYQKATSS-GATSIEFKEAVLQLEVTPQITPDNRIIM 659
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ + V PS + + +T + +G T+VL G+ + + + +PLL
Sbjct: 660 DLLVS-QDSVGAFTPTGEPSIDITQIETQALVGNGQTLVLEGIFQTEEVNGTDKVPLLGD 718
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
+P LG LFRN N E+ EI TP ++
Sbjct: 719 LPFLGKLFRNDLRNIEKREILSFITPKIID 748
>gi|153947838|ref|YP_001402784.1| YscC/HrcC family type III secretion outer membrane protein
[Yersinia pseudotuberculosis IP 31758]
gi|170026130|ref|YP_001722635.1| YscC/HrcC family type III secretion outer membrane protein
[Yersinia pseudotuberculosis YPIII]
gi|186893670|ref|YP_001870782.1| YscC/HrcC family type III secretion outer membrane protein
[Yersinia pseudotuberculosis PB1/+]
gi|152959333|gb|ABS46794.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pseudotuberculosis IP 31758]
gi|169752664|gb|ACA70182.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pseudotuberculosis YPIII]
gi|186696696|gb|ACC87325.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pseudotuberculosis PB1/+]
Length = 505
Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%)
Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
+ V L G+V +++ + + L+ + S+ N + I
Sbjct: 203 QYRDQNVRLPGLVSVLRELNQGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQAN 262
Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
Q+ + VTI +V + Q+G S + S G SF + F
Sbjct: 263 MPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNST----F 318
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ + D +F L+AL++ + R L++P++ ++ A K
Sbjct: 319 AKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKL- 377
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354
+ + G +L TP ++ G + + + + + +P R
Sbjct: 378 -QGEKVAKLESVTSGSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNS 436
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T L G +++L G ++D + + IPLL IP+LG LFR++
Sbjct: 437 DISTQATLQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 496
Query: 415 T 415
Sbjct: 497 K 497
>gi|253987556|ref|YP_003038912.1| hypothetical protein PAU_00073 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253779006|emb|CAQ82166.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 344
Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 53/232 (22%), Positives = 89/232 (38%), Gaps = 7/232 (3%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---DFSVKGV 250
QV + I R+ L ++G I + + +
Sbjct: 114 QQVQITAHIVTSSREALHELGIYWGIPIGEQLNTSTGINRLNINQAANDNMHRFALNIAR 173
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ E L ALE+ + +A P LTA Q AS G VS ++V
Sbjct: 174 IHTSLLELELSALEQENLLDIIASPRLTASHQQLASIKQGSDIP--YVSQEKEKSTVQFK 231
Query: 311 DYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
+ + + TP +L +I L+I + I G+ + ++ T V + +G T+
Sbjct: 232 EAVLGMEVTPHILRKDKIRLSLKISQNMPGISISQGGGENLTIDKQEIMTQVTVKNGETL 291
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+L G+ + + + IP LS IP+LG+LF E+ I TP L+
Sbjct: 292 ILGGIFQQKKGEKTQKIPYLSDIPLLGSLFDQKGHKHSRRELIIFITPQLMD 343
>gi|120602835|ref|YP_967235.1| type II and III secretion system protein [Desulfovibrio vulgaris
DP4]
gi|120563064|gb|ABM28808.1| type II and III secretion system protein [Desulfovibrio vulgaris
DP4]
Length = 524
Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/365 (18%), Positives = 130/365 (35%), Gaps = 45/365 (12%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV---LHGMVRTIQ 155
V+ + ++ + +R L+ + S I V + L G + +
Sbjct: 152 VMTLADKKAEVERELLETQRMAQQLKGRKVGPLVTSVIEVRYAEAAELKKNLEGFLSKDE 211
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQI 213
++ + + S Q K++ L+N Q+ LK I E RD + +
Sbjct: 212 QNKPVGAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVEATRDTARDL 271
Query: 214 GFQHSITGSSSG-----------------------PSKSFAADFGGKFVSEGGDFSV--- 247
G Q G S G +G +
Sbjct: 272 GIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVPVIPPGGLSGQGFGMNFPVN 331
Query: 248 -------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
G + E L AL+ + L+ P+++ + Q A FT G+ +
Sbjct: 332 KAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMA-FTENGEKV 390
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
+++ G V D + L TP V+ + L++Q + E + P +
Sbjct: 391 PYVSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTVEGNPFIIKK 450
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +TT+ + G T+V++GL K+ ++G+P L + +GALF N + ++ I
Sbjct: 451 QTETTLIVQDGETVVISGLTKERSSSRRQGLPYLQDVEGIGALFGNDSKANKLEDVLIFI 510
Query: 415 TPFLV 419
TP ++
Sbjct: 511 TPAIL 515
>gi|83645990|ref|YP_434425.1| putative type III secretion protein YscC [Hahella chejuensis KCTC
2396]
gi|83634033|gb|ABC30000.1| putative type III secretion protein YscC [Hahella chejuensis KCTC
2396]
Length = 573
Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 49/238 (20%), Positives = 90/238 (37%), Gaps = 14/238 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------FVSEGGD 244
QV ++V+I +V D L ++GF+ I G + + + + V +G +
Sbjct: 309 RSQVEIEVSIIDVSTDRLNEMGFEWRINGRNGSFTNADFSQGALPRSPNELSFVVGDGAN 368
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
FS + F + + AL L++PT+ + A + V
Sbjct: 369 FSTLLTNTQDLFLSRIRALSEDGDASVLSQPTILTLDNIEAVLDHSTTFFVRLV--GDRE 426
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ G V+ TP ++ +I L I E G D+P+ T
Sbjct: 427 VDLFPVSVGSVVRVTPHIVKGDLSDKIHLNINIE-DGQQTGQAVDDIPAVSKSIITTEAL 485
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ G++++ G + + IP+L IP+LG LFR ++ +P +V
Sbjct: 486 VNDNGSLLVGGYYFNQDSTNRSKIPVLGDIPLLGRLFRTDGSQLQKRARLFLISPRIV 543
>gi|108810017|ref|YP_653933.1| type III secretion protein [Yersinia pestis Antiqua]
gi|108813572|ref|YP_649339.1| type III secretion protein [Yersinia pestis Nepal516]
gi|145600961|ref|YP_001165037.1| type III secretion protein [Yersinia pestis Pestoides F]
gi|165936434|ref|ZP_02225002.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Orientalis str. IP275]
gi|166010446|ref|ZP_02231344.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166213955|ref|ZP_02239990.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Antiqua str. B42003004]
gi|167419179|ref|ZP_02310932.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167426134|ref|ZP_02317887.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|167469427|ref|ZP_02334131.1| possible type III secretion protein [Yersinia pestis FV-1]
gi|270488950|ref|ZP_06206024.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis KIM D27]
gi|108777220|gb|ABG19739.1| type III secretion protein [Yersinia pestis Nepal516]
gi|108781930|gb|ABG15988.1| type III secretion protein [Yersinia pestis Antiqua]
gi|145212657|gb|ABP42064.1| type III secretion protein [Yersinia pestis Pestoides F]
gi|165915550|gb|EDR34159.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Orientalis str. IP275]
gi|165990536|gb|EDR42837.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166204930|gb|EDR49410.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Antiqua str. B42003004]
gi|166963173|gb|EDR59194.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167054845|gb|EDR64647.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|270337454|gb|EFA48231.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
pestis KIM D27]
Length = 505
Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%)
Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
+ V L G+V +++ + + L+ + S+ N + I
Sbjct: 203 QYRDQNVRLPGLVSVLRELNQGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQAN 262
Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
Q+ + VTI +V + Q+G S + S G SF + F
Sbjct: 263 MPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNST----F 318
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ + D +F L+AL++ + R L++P++ ++ A K
Sbjct: 319 AKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKL- 377
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354
+ + G +L TP ++ G + + + + + +P R
Sbjct: 378 -QGEKVAKLESVTSGSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNS 436
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T L G +++L G ++D + + IPLL IP+LG LFR++
Sbjct: 437 DISTQATLQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 496
Query: 415 T 415
Sbjct: 497 K 497
>gi|46579684|ref|YP_010492.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449099|gb|AAS95751.1| bacterial type II/III secretion system protein [Desulfovibrio
vulgaris str. Hildenborough]
gi|311233480|gb|ADP86334.1| type II and III secretion system protein [Desulfovibrio vulgaris
RCH1]
Length = 524
Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/365 (18%), Positives = 130/365 (35%), Gaps = 45/365 (12%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV---LHGMVRTIQ 155
V+ + ++ + +R L+ + S I V + L G + +
Sbjct: 152 VMTLADKKAEVERELLETQRMAQQLKGRKVGPLVTSVIEVRYAEAAELKKNLEGFLSKDE 211
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQI 213
++ + + S Q K++ L+N Q+ LK I E RD + +
Sbjct: 212 QNKPVGAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVEATRDTARDL 271
Query: 214 GFQHSITGSSSG-----------------------PSKSFAADFGGKFVSEGGDFSV--- 247
G Q G S G +G +
Sbjct: 272 GIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVPVIPPGGLSGQGFGMNFPVN 331
Query: 248 -------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
G + E L AL+ + L+ P+++ + Q A FT G+ +
Sbjct: 332 KAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMA-FTENGEKV 390
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
+++ G V D + L TP V+ + L++Q + E + P +
Sbjct: 391 PYVSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTVEGNPFIIKK 450
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ +TT+ + G T+V++GL K+ ++G+P L + +GALF N + ++ I
Sbjct: 451 QTETTLIVQDGETVVISGLTKERSSTRRQGLPYLQDVEGIGALFGNDSKANKLEDVLIFI 510
Query: 415 TPFLV 419
TP ++
Sbjct: 511 TPAIL 515
>gi|254445969|ref|ZP_05059445.1| Bacterial type II and III secretion system protein
[Verrucomicrobiae bacterium DG1235]
gi|198260277|gb|EDY84585.1| Bacterial type II and III secretion system protein
[Verrucomicrobiae bacterium DG1235]
Length = 736
Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 78/449 (17%), Positives = 154/449 (34%), Gaps = 33/449 (7%)
Query: 51 SIGLNKVIILQVP---VDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDG 106
++ + II ++ + V AD V S + ++ GK N
Sbjct: 291 NLEFFEGIIQKLDIKADPSTRIEVIPLKHADATEVASLLSQFVSGKTKNDTN----DRTN 346
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
A D+ +R + + G R Q S L++
Sbjct: 347 SPGNTNTRSGRSGGAGSPTFGGANQNDTPVRETLGAGAGSSVGEDRDSQFSTFMTILADE 406
Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---HSITG 221
+ + + ++N ++I QV ++V IAEV + + + S+T
Sbjct: 407 RSNSLVISGTRSDLDLMTVLVNKIDILLP-QVRIEVIIAEVSLNENEGLSRGMDAFSMTY 465
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------FETVLHALERATAIRT 271
+ + G + +F G+ F+ +L+ + ++
Sbjct: 466 AEQDDGSANITIPGPGDDAPAINFLGLGLDGSFNYNDGVISGLTLNGILNTARSNSNVQL 525
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPG 326
L+ PTL + A+ T S + T +V D G+ L TP +
Sbjct: 526 LSVPTLVTTHNKEATIVVAEARPIVTSSQTSSISDTFRQNVQYEDIGIELTVTPLIGPND 585
Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
I L I ++ + + ++ D P R+A + V + + +VL GL ++ + + +
Sbjct: 586 VIQLEIDQKIDDISGKVTIDGNDQPIIGRRQATSYVSVANHELVVLGGLQRNRVTKGRSK 645
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDDAKA 442
+ L +IP+LG LF +TE+ + P +++ +D S+ D +
Sbjct: 646 MSFLGEIPLLGGLFNRRSDESVKTELLVFIRPEVIRTTDDVNQDASKKIDELEAAAAIQR 705
Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
F I + E + GF
Sbjct: 706 FLETGELDISKIGDLDEEAPKAQPKGKGF 734
>gi|207724227|ref|YP_002254624.1| general secretion pathway gspd-related protein [Ralstonia
solanacearum MolK2]
gi|206589440|emb|CAQ36401.1| general secretion pathway gspd-related protein [Ralstonia
solanacearum MolK2]
Length = 761
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 66/460 (14%)
Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV--- 79
AK P + A + + + + I+ L+K + + V + D
Sbjct: 180 AAKQPINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDL 236
Query: 80 ---------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
+ + T+ ++ + ++ L + L+
Sbjct: 237 ILSTTQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNAEAKQTGAMLKTM 291
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ ++ ++ VV+ +S V L+E + RN +V+ + +
Sbjct: 292 LKIREPYIDERANMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS- 343
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
L Q+G Q+ + + + S + A
Sbjct: 344 -----------------TKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNS----DR 382
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSV 307
+ + VL+ LA P + A + + A G + T +S++ + SV
Sbjct: 383 IGVSTPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESV 442
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPS 364
D G+ L P++ + ++I EVS + + R A+T ++L
Sbjct: 443 QYIDVGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHD 502
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G T +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP
Sbjct: 503 GETQLLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP--- 559
Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
+ E + F+ + + +
Sbjct: 560 --------SHRPETNFMEFWSGTETNARARRTLPDSQAPA 591
>gi|254459101|ref|ZP_05072524.1| type II and III secretion system protein [Campylobacterales
bacterium GD 1]
gi|207084372|gb|EDZ61661.1| type II and III secretion system protein [Campylobacterales
bacterium GD 1]
Length = 551
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 57/326 (17%), Positives = 108/326 (33%), Gaps = 31/326 (9%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ I + + L + + + L + QV + V + V +
Sbjct: 194 TAQDIYQASAPIINKNAGLVTVTATLKQMNRLEGYLKKLQDKVQLQVLIDVQLLSVTMEE 253
Query: 210 LKQIGFQHS------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
K G S + + + S+ V + +
Sbjct: 254 GKTTGVDWQQLYALQKVTLSANYLSKNNVPTFTGTEITTAGAQAVNEASLVTVKAGGTLD 313
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------------T 305
V+ L+ + +++ P + ++ Q A T+G ++ YK S +
Sbjct: 314 EVIKFLQTQGDVVSISNPKVLTLNNQPALITAGTEYFYKIKSETNQQGTGGGVAATTQND 373
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKADTT 359
+V + GV+L TP + I L+I +SE ++ P R+ +
Sbjct: 374 TVQSVFAGVLLDITPEIADDKSITLKINPSLSETAQDISQESSANRVMPPDLNRRQLSSV 433
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V + G I+L GL+ +PLL IP L LF+ ++ E+ I P ++
Sbjct: 434 VTVKDGNRIILGGLINTKNVNKSNKVPLLGDIPGLSYLFKYEEMTKQIQELVIVIEPHII 493
Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFF 445
A +LS + Y D
Sbjct: 494 D-KANNNLSLAELGYKGITDHTVILN 518
>gi|253988518|ref|YP_003039874.1| type III secretion outer membrane protein pscc [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|211637900|emb|CAR66529.1| type iii secretion outer membrane protein pscc [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253779968|emb|CAQ83129.1| type iii secretion outer membrane protein pscc [Photorhabdus
asymbiotica]
Length = 618
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 53/363 (14%), Positives = 121/363 (33%), Gaps = 24/363 (6%)
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDIL---IERDIAHLEMTLRRFIADSNIRVEMV 141
+ L + G + + +++ I + + L R ++D+N+
Sbjct: 174 QQSLLRSEKTGALTIEIFPLKYASVVDRKIQYRDTNIEAPGIATVLSRLLSDANVTTVT- 232
Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
+ G + + +A + + + + + ++N L+ + + ++
Sbjct: 233 GEMSSSTGGNHSSRAVIQAEPSLNAIIVRDNPERMSMYTH--LINALDKPSAR-IEVALS 289
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----------GKFVSEGGDFSVKGV 250
I ++ D L ++G + ++ G+ + S+
Sbjct: 290 IVDINADNLSELGVDWQVGINTGPRHIIDITTSAREKEKEKNGGKGESIGSTALGSLVDR 349
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ LE + + ++ PTL A + K + +
Sbjct: 350 RGLDYLLAKITLLESKGSAQVVSRPTLLTQENTQAVIDHNETYYVKV--EGERVAELKSL 407
Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGG 366
YG +L TP V+ G I L + E + G +P+ DT + G
Sbjct: 408 TYGTMLRMTPRVIKIGDTPEISLNLHIEDGNQKPNSSGLGGIPTINRTIVDTVARVGHGQ 467
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
++++ G+ +D++ + +P L IP LG LFR + + P L+
Sbjct: 468 SLLIGGIYRDEMSETVRKVPFLGDIPYLGVLFRTTTEQVRRSVRLFIIEPRLIDSGVANY 527
Query: 427 LSR 429
L+
Sbjct: 528 LAL 530
>gi|124268320|ref|YP_001022324.1| general secretion pathway protein D [Methylibium petroleiphilum
PM1]
gi|124261095|gb|ABM96089.1| general secretion pathway protein D [Methylibium petroleiphilum
PM1]
Length = 736
Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/291 (17%), Positives = 97/291 (33%), Gaps = 41/291 (14%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
V++ L+ QV ++ + EV G Q G
Sbjct: 397 SVIDQLDAR-RAQVYVETMLVEVNATKAADAGIQWQGLIGKDGDKTGLIGGTNFGTGGDN 455
Query: 236 ----------------GKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLT 278
G S G + V ++ + LE L+ P L
Sbjct: 456 IINLSIAAAQGGTAVSGNLPSAGLNLGVIRRFAGVYTLGALARFLETNADGNILSTPNLV 515
Query: 279 AISGQSASFTSGGQHLYKTVS---------SSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+ + A G + T S ++ ++ D G+ L P + G +
Sbjct: 516 TLDNEEAKIVVGQNVPFVTGSFTSTGTGSGATNPFQTIERRDVGITLRVKPQIGENGTVR 575
Query: 330 LRIQTEVSEPVIGVNAGDMP------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
+ I E S V + + R ++TV + G +V+ GL++D Q
Sbjct: 576 MTIYQEASSVVNQNVSQGVADATAGLVTNKRSIESTVVVNDGDILVMGGLMQDQFQDNSS 635
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
+P L ++P +GALFR+ R ++ + + P +++ + + D Y
Sbjct: 636 RVPGLGRLPGIGALFRSDNRTRTKSNLMVFLRPQVMRSAESSN-ALSLDRY 685
>gi|297539729|ref|YP_003675498.1| type IV pilus secretin PilQ [Methylotenera sp. 301]
gi|297259076|gb|ADI30921.1| type IV pilus secretin PilQ [Methylotenera sp. 301]
Length = 728
Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 3/189 (1%)
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
++ + +S+ L A+E + ++ P +T + A +G
Sbjct: 537 SNLAVANATGSIAYSIFSKAAGLVLNMELTAMESDGHGKIVSSPRVTTANQHKAKIAAGT 596
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
+ Y SSS AT V+ + L TP + +I + + +V + +G +PS
Sbjct: 597 EIPYLEASSSGAAT-VSFKSAVLSLEVTPQITPDDKIIMEL--DVKKDRVGQVFSGVPSI 653
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+ +T V + +G T VL G+ + ++ E +P +PI+G LF+ ++ E+
Sbjct: 654 ETQNINTQVLVGNGETAVLGGIFEQTVRNDVEKVPFFGDLPIMGNLFKKRTTQNDKQELL 713
Query: 412 IAATPFLVK 420
I TP ++
Sbjct: 714 IFITPRIMD 722
>gi|33596848|ref|NP_884491.1| putative type III secretion protein [Bordetella parapertussis
12822]
gi|33573549|emb|CAE37540.1| putative type III secretion protein [Bordetella parapertussis]
Length = 600
Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/249 (17%), Positives = 81/249 (32%), Gaps = 11/249 (4%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-----SVKGV 250
+ ++ I +V D++ ++G ++ G + G G+
Sbjct: 300 IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPVDGAAAELAPGTLGI 359
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
L ALE L++P++ A +T+ +VT
Sbjct: 360 SVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIRTL--GERVATVTPV 417
Query: 311 DYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
G L TP + ++ L I E + +P R T + T
Sbjct: 418 TVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRKSSISTLAVVGDEQT 477
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+++ G ++ E +PLL IP LG LF + + E P +V + + +
Sbjct: 478 LLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFLIRPRVV-AIEGKPV 536
Query: 428 SRPDDHYSV 436
P S
Sbjct: 537 FSPVAGTSQ 545
>gi|157363362|ref|YP_001470129.1| type II and III secretion system protein [Thermotoga lettingae TMO]
gi|157313966|gb|ABV33065.1| type II and III secretion system protein [Thermotoga lettingae TMO]
Length = 1179
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 63/315 (20%), Positives = 126/315 (40%), Gaps = 39/315 (12%)
Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS--QRAVELSETFLS 169
+ ++ ++ + + ++ ++D +V+ G+ + ++D Q +++++
Sbjct: 895 FVYTLPHNLDRIKSLIE--FYGGKVYIDELNDLMVVTGLSKKMKDQLDQTILQIAQPL-- 950
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
Q+ ++ + V R ++ +I Q+S++ S G +
Sbjct: 951 ------------------------KQIEIEAKL--VDRSLIDEITRQNSLSISLPGQAPE 984
Query: 230 FAADFGGKFVSEGGDFSV-----KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+S L S V LA P + SG+
Sbjct: 985 ITVSSTSLSLSTSVINLFDYQKLFSYLSGASVTAVFELNNSNNLDNLLASPRIVTSSGKE 1044
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
A G + Y+ + G V D G+ L TP V + G I L I T+VS+P N
Sbjct: 1045 ARILIGDRVPYQ-TIDADGNVIVNFLDTGIELRITPYVRTDGTIELNIFTKVSKPTYYPN 1103
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
D+P R+ +T V L +G T+V+ GL+++ ++ +P L +P +G LFR+
Sbjct: 1104 -IDIPGESTRETETDVILKNGDTLVIGGLMRETKEETSAKMPFLGDLPFIGQLFRSKTEK 1162
Query: 405 REETEIFIAATPFLV 419
++ E+ I T ++
Sbjct: 1163 ADKRELLIFITARVI 1177
>gi|33600622|ref|NP_888182.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
gi|33568221|emb|CAE32134.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
Length = 600
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/249 (17%), Positives = 81/249 (32%), Gaps = 11/249 (4%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-----SVKGV 250
+ ++ I +V D++ ++G ++ G + G G+
Sbjct: 300 IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPVDGAAAELAPGTLGI 359
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
L ALE L++P++ A +T+ +VT
Sbjct: 360 SVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIRTL--GERVATVTPV 417
Query: 311 DYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
G L TP + ++ L I E + +P R T + T
Sbjct: 418 TVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRKSSISTLAVVGDEQT 477
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+++ G ++ E +PLL IP LG LF + + E P +V + + +
Sbjct: 478 LLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFLIRPRVV-AIEGKPV 536
Query: 428 SRPDDHYSV 436
P S
Sbjct: 537 FSPVAGTSQ 545
>gi|298527693|ref|ZP_07015097.1| type II and III secretion system protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511345|gb|EFI35247.1| type II and III secretion system protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 553
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/271 (18%), Positives = 98/271 (36%), Gaps = 31/271 (11%)
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
+ + L QV + I EV Q+G S + +++ + G +
Sbjct: 281 VANNFIKQLKSKLSQQVVIDAQILEVSLSDSFQLGVDWSYISQELASNFAYSVNLGWQSA 340
Query: 240 SEGGDFSVKGVLDRF---------------SFETVLHALERATAIRTLAEPTLTAISGQS 284
G + ++ F + ALE + ++ P + + Q
Sbjct: 341 QGFGTYGLESEDPVPIVIDSRTGDVDEVYRQFSATIQALETFGQVSVVSNPHVRSRHLQP 400
Query: 285 ASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
A TSG + + + + T GV+L P + G + L I
Sbjct: 401 ALVTSGTTRNFIQEITRSRRATDEDWVDYSVNTGTAFEGVMLGVVPFITDNGDVDLDIFP 460
Query: 335 EVSEPVIGVNA------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
S+ + A +P VR +T V + G T++L GL++ ++ + P
Sbjct: 461 ITSQVDLSETAKIGGDQITLPKVNVRNVNTKVRVNDGDTVILGGLIQKGSRERERATPGA 520
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
S+IP LG LF+ +++ +E+ + +V
Sbjct: 521 SRIPGLGWLFKQREDSQDLSELVVIMHVRVV 551
>gi|207739033|ref|YP_002257426.1| general secretion pathway gspd-related protein [Ralstonia
solanacearum IPO1609]
gi|206592404|emb|CAQ59310.1| general secretion pathway gspd-related protein [Ralstonia
solanacearum IPO1609]
Length = 761
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 66/460 (14%)
Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV--- 79
AK P + A + + + + I+ L+K + + V + D
Sbjct: 180 AAKQPINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDL 236
Query: 80 ---------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
+ + T+ ++ + ++ L + L+
Sbjct: 237 ILSTTQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNAEAKQTGAMLKTM 291
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ ++ ++ VV+ +S V L+E + RN +V+ + +
Sbjct: 292 LKIREPYIDERANMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS- 343
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
L Q+G Q+ + + + S + A
Sbjct: 344 -----------------TKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNS----DR 382
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSV 307
+ + VL+ LA P + A + + A G + T +S++ + SV
Sbjct: 383 IGVSTPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESV 442
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPS 364
D G+ L P++ + ++I EVS + + R A+T ++L
Sbjct: 443 QYIDVGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHD 502
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G T +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP
Sbjct: 503 GETQLLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP--- 559
Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
+ E + F+ + + +
Sbjct: 560 --------SHRPETNFMEFWSGTETNARARRTLPDGQAPA 591
>gi|37527640|ref|NP_930984.1| Type III secretion component protein SctC [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36787075|emb|CAE16150.1| Type III secretion component protein SctC [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 614
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/358 (14%), Positives = 120/358 (33%), Gaps = 33/358 (9%)
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDIL---IERDIAHLEMTLRRFIADSNIRVEMV 141
+ L + G V + +++ I + + L R ++D+N+
Sbjct: 171 QQSLLRSEKTGALTVEIFPLKYASVVDRKIQYRDTSIEAPGIATILSRLLSDTNVTA--- 227
Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK------VMNLLNIAGEDQ 195
+ G + + + S + ++ ++N L+
Sbjct: 228 -----VTGEASSPSMGESYSSRAVVQAEPSLNAIIVRDNPERMSMYAHLINALDKPSAR- 281
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDFS 246
+ + ++I ++ + L ++G + ++ G+ + S
Sbjct: 282 IEVALSIVDIDANNLSELGVDWQVGINTGPRHIIDITTSAREKTEIKEKGESIGSAALGS 341
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ + LE + + ++ PTL A + + K +
Sbjct: 342 LVDRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQAVIDNNETYYVKV--NGERVAE 399
Query: 307 VTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVEL 362
+ + YG +L P V+ G I L + E ++ +P+ DT +
Sbjct: 400 LKSLTYGTMLRMIPRVIQVGDSSEISLDLHIEDGNQKPNSSGQDGIPTISRTVVDTVARV 459
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G ++++ G+ +D++ Q+ +P L IP LG LFRN+ + P L+
Sbjct: 460 GHGQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNTSEQVRRSVRLFIIEPRLID 517
>gi|197121137|ref|YP_002133088.1| general secretion pathway protein D [Anaeromyxobacter sp. K]
gi|196170986|gb|ACG71959.1| general secretion pathway protein D [Anaeromyxobacter sp. K]
Length = 904
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 60/321 (18%), Positives = 109/321 (33%), Gaps = 57/321 (17%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V+ D + L + + Q QV ++ I EV
Sbjct: 451 SGEVKITADKTQNALLVQASGADFSAVQRLVEKLD--------RPRRQVFVEAVIMEVNL 502
Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247
++G S TG + S A GG G S
Sbjct: 503 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVNSLDMSSAIALGGFLTGYTGPISAEL 562
Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-- 303
G + S ++ AL+ + + L+ P L A + + T G +++ + +G
Sbjct: 563 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPSGLS 622
Query: 304 ------------------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
+ + + L P + G I L I+ E +E
Sbjct: 623 NLLSGSSATSTVGSALGTQGLSSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQTEE 681
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ + P+ R T + TIV+ GL++D + IP L +PILG LFR
Sbjct: 682 IAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFR 741
Query: 400 NSRFNREETEIFIAATPFLVK 420
++ +++ + + TP++++
Sbjct: 742 DTTTTKQKVNLLLFLTPYIIR 762
>gi|313683362|ref|YP_004061100.1| type ii and iii secretion system protein [Sulfuricurvum kujiense
DSM 16994]
gi|313156222|gb|ADR34900.1| type II and III secretion system protein [Sulfuricurvum kujiense
DSM 16994]
Length = 494
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 56/262 (21%), Positives = 102/262 (38%), Gaps = 29/262 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
++ + L QV ++ + E+ + IG S S + + + +
Sbjct: 223 EQYLAALKKRMHQQVMIEAHLIELTYNDYSSIGVNWS------NFSLALNGSYTNSYNNI 276
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G V F+ ++ L++ + L+ P + +S Q A G Q Y + S
Sbjct: 277 GTAHPVYSFGIDFNPTGLIDFLKQYGDVEVLSNPKVLTLSNQPAIINVGKQLSYLYQNGS 336
Query: 302 ---------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---- 348
T ++ + G+ L+ P V G I +RI SE +
Sbjct: 337 IIGTTSTPTTVTNTLGSVFVGLTLNIIPEVSEDGYIIMRINPVSSELLSDSELSSSSSQT 396
Query: 349 ----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
P RV++ + V++ +++ GL++ + + +PLL IP+ G LF
Sbjct: 397 SQTQTDRVMPPDTRVKQMSSIVKVKDSQKVLIGGLIEKKNYKNQTKVPLLGDIPLFGKLF 456
Query: 399 RNSRFNREETEIFIAATPFLVK 420
NS ++E+FI TP LVK
Sbjct: 457 HNSTDTIRKSELFILITPILVK 478
>gi|71899610|ref|ZP_00681765.1| type II and III secretion system protein:NolW-like [Xylella
fastidiosa Ann-1]
gi|71730652|gb|EAO32728.1| type II and III secretion system protein:NolW-like [Xylella
fastidiosa Ann-1]
Length = 775
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 112/291 (38%), Gaps = 41/291 (14%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235
V+ L++ QV ++ +AEV G S +G S G
Sbjct: 474 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 532
Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283
S G K + + +++AL++ T +R L P++ +
Sbjct: 533 AGLPSAAGRSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 592
Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
A+ G + + S +TG +SV D GV+L P V G + L I EVS
Sbjct: 593 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 652
Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
P + +A R+ T + SG TI+LAGL+ + + G+
Sbjct: 653 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 712
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
P LSK+PI+G LF N EI + TP +V+ ++ D YS
Sbjct: 713 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 761
>gi|222823425|ref|YP_002574999.1| type II protein secretion system D protein CtsD [Campylobacter lari
RM2100]
gi|222538647|gb|ACM63748.1| putative type II protein secretion system D protein CtsD
[Campylobacter lari RM2100]
Length = 463
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 24/275 (8%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+K + LN + QV + V+I V + G + F+
Sbjct: 196 EKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQDLAFKLNGDDN-------DFIIN 248
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G + + +L+ L+ L+ P L A++ Q A + G Y+ SS
Sbjct: 249 KGGVKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESS 308
Query: 302 TGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA------- 345
G + TT G++L+ P + +I LRI +S+ V+
Sbjct: 309 KGTENGTTISETYNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPR 368
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
P +K T VE+ G T++L GL+ + + LSKIP+ GALF+ +
Sbjct: 369 NIAPDTIQKKLSTVVEVDDGQTLILGGLISKNTISNHNEVSALSKIPLFGALFQGKQNLE 428
Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
+ +EI P L++ + LS + + EDD
Sbjct: 429 DISEIVFIIKPSLIRA-DKKVLSLKELGFEHEDDM 462
>gi|33593235|ref|NP_880879.1| putative type III secretion protein [Bordetella pertussis Tohama I]
gi|29603239|emb|CAC79584.1| bscC [Bordetella pertussis Tohama I]
gi|33563610|emb|CAE42511.1| putative type III secretion protein [Bordetella pertussis Tohama I]
gi|332382644|gb|AEE67491.1| putative type III secretion protein [Bordetella pertussis CS]
Length = 600
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/249 (17%), Positives = 81/249 (32%), Gaps = 11/249 (4%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-----SVKGV 250
+ ++ I +V D++ ++G ++ G + G G+
Sbjct: 300 IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPVDGAAADLAPGTLGI 359
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
L ALE L++P++ A +T+ +VT
Sbjct: 360 SVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIRTL--GERVATVTPV 417
Query: 311 DYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
G L TP + ++ L I E + +P R T + T
Sbjct: 418 TVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRKSSISTLAVVGDEQT 477
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+++ G ++ E +PLL IP LG LF + + E P +V + + +
Sbjct: 478 LLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFLIRPRVV-AIEGKPV 536
Query: 428 SRPDDHYSV 436
P S
Sbjct: 537 FSPVAGTSQ 545
>gi|71274709|ref|ZP_00650997.1| type II and III secretion system protein:NolW-like [Xylella
fastidiosa Dixon]
gi|170730050|ref|YP_001775483.1| general secretory pathway protein D [Xylella fastidiosa M12]
gi|71164441|gb|EAO14155.1| type II and III secretion system protein:NolW-like [Xylella
fastidiosa Dixon]
gi|167964843|gb|ACA11853.1| general secretory pathway protein D precursor [Xylella fastidiosa
M12]
Length = 775
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 112/291 (38%), Gaps = 41/291 (14%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235
V+ L++ QV ++ +AEV G S +G S G
Sbjct: 474 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 532
Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283
S G K + + +++AL++ T +R L P++ +
Sbjct: 533 AGLPSAAGRSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 592
Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
A+ G + + S +TG +SV D GV+L P V G + L I EVS
Sbjct: 593 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 652
Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
P + +A R+ T + SG TI+LAGL+ + + G+
Sbjct: 653 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 712
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
P LSK+PI+G LF N EI + TP +V+ ++ D YS
Sbjct: 713 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 761
>gi|124515780|gb|EAY57289.1| putative general secretion pathway protein D [Leptospirillum
rubarum]
gi|206602163|gb|EDZ38645.1| Putative general secretion pathway protein D [Leptospirillum sp.
Group II '5-way CG']
Length = 555
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 8/207 (3%)
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
++G ++S G G G ++ S T+L+AL+ + ++TL+ P + A
Sbjct: 292 GAAGAAQSLTGLTGLIAGVLTGGSFNYGGVNYPSIGTLLNALQTDSDVKTLSTPEILATD 351
Query: 282 GQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
Q A T G + T S T + + G+ L TP +L+ R+ L ++ ++
Sbjct: 352 SQKAKITVGEDVPFITGQSQTVGGNVMTMIQRQNVGITLDITPHILAHDRVRLNLKQTIT 411
Query: 338 EPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
P+ R T + + SG T+V+ GL+ + K IP L +IP+
Sbjct: 412 ALTNASQLIGTMAVGPTTTKRSTKTILTVRSGQTVVIGGLISSEKSLNKSTIPWLGEIPV 471
Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420
LG LF +++ ++ ++ I TP++++
Sbjct: 472 LGYLFSSTQNEKKRDDLLIFLTPYIIR 498
>gi|226944981|ref|YP_002800054.1| type II and III secretion system protein [Azotobacter vinelandii
DJ]
gi|226719908|gb|ACO79079.1| type II and III secretion system protein [Azotobacter vinelandii
DJ]
Length = 614
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 78/461 (16%), Positives = 157/461 (34%), Gaps = 64/461 (13%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P E A + + + + ++ ++ + + + V D+
Sbjct: 188 PVSLEFREANLKLVFEVLAQTAGMNFIFDQDVSPDLKATIYVRQVPIEEAVDLLLQQGQL 247
Query: 80 --VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
V + T+ ++ + + +L L D ++ + ++
Sbjct: 248 KHKVVNENTVLIYPNTP-----QKLKDYQELVLKTFYLTNIDANTALNMVKTLLKTRDVF 302
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
V+ +T+ + AV L+E + V
Sbjct: 303 VDERLNTLTMRDTP-------DAVHLAERLFLAQDQANPE------------------VV 337
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
L++ + EV R + +G Q T + A G+ + S
Sbjct: 338 LELEVMEVSRKRILDLGLQWPNTFGILAEDGTSAVSILGQLR----GIDSDRINFSPSPT 393
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHD 311
++A + + TLA P L + + A G + + +S+ ++T D
Sbjct: 394 LKINA--NDSDVNTLASPVLRVSNREQARIHIGERVPVVSATSTPSTQGPVITENITYLD 451
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMP-SYRVRKADTTVELPSGGTI 368
G+ L PT+ + +++ EVS AG +P R A TT+ L +G T
Sbjct: 452 VGLKLEVEPTIHLNDEVAIKVGLEVSNATQLTRTEAGTIPIQVDTRNAVTTLRLRNGETQ 511
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
VLAGL+++D + + IP L IP +G LF +++ ++E+ ++ TP +V+ +
Sbjct: 512 VLAGLMRNDQGKSGDRIPGLGDIPGIGRLFGSNKDTLSKSELVLSITPRIVRNLP----- 566
Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
Y D + + P G +G
Sbjct: 567 -----YQNPYDMEFESGTESSLRLRPAALPRKAGAALRGQA 602
>gi|254785258|ref|YP_003072686.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901]
gi|237687142|gb|ACR14406.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901]
Length = 570
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/260 (19%), Positives = 99/260 (38%), Gaps = 24/260 (9%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVS 240
+ ++ QV L+ I EV+ + + G + G S + G K
Sbjct: 284 LERSELSVRRQVVLETKIIEVQLNDGYEAGVNWGAITGALGVASDSSLVMTNNDGVKSKI 343
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS- 299
+ GVL+ E +L+ LE ++ L+ P ++ ++ Q A G + T
Sbjct: 344 RTTQNLLSGVLNVTRIEDLLNLLETQGNVQVLSSPRISTVNNQKAIIRVGTDEFFVTGIT 403
Query: 300 ----------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
++ + + G+ L TP + G + + + VS+ + +
Sbjct: 404 NNTTTTASNIQNSPEVLLDSFFSGIALDVTPQIAEDGDVIIHVHPLVSKVQDQLKDISIG 463
Query: 350 SYR---------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
VR++D+ V +G +VL GL+++ + P L IP + LF+
Sbjct: 464 DLDYSLPLALRDVRESDSIVRASNGQVVVLGGLMQETTSDVATKRPFLGDIPGVNVLFKG 523
Query: 401 SRFNREETEIFIAATPFLVK 420
+ +TE+ I P +V
Sbjct: 524 RAKRKVKTELVILMRPIVVD 543
>gi|307823412|ref|ZP_07653641.1| type II and III secretion system protein [Methylobacter
tundripaludum SV96]
gi|307735397|gb|EFO06245.1| type II and III secretion system protein [Methylobacter
tundripaludum SV96]
Length = 554
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 49/251 (19%), Positives = 87/251 (34%), Gaps = 17/251 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ ++ QV L+ I EV D Q G GG
Sbjct: 273 ESFLSATQTQISRQVILEAKILEVTLDDNHQDGVNWESIVKEGINKAPLLTGIGGVMDPN 332
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
F + +E L+ P ++ ++ QSA G + T +
Sbjct: 333 TFASVFTLGAHSGDFRAFVELMETQGKTNVLSSPRISTLNNQSAIIKVGQDEYFATGFNG 392
Query: 302 T-----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--- 347
+ G+ L TP + I L I +S+
Sbjct: 393 GTPGATGVAPTAPTVLIDVFFSGISLDVTPQIDDNEDITLHIHPSISQVKKDTKDFGLDI 452
Query: 348 ---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+ VR++D+ V+ +G IVL GL++++ + K+G+ L+ IP +G LFR +
Sbjct: 453 TLPLALTTVRESDSIVKAKNGQIIVLGGLMQENDNEKKQGVTGLAAIPYIGNLFRVNTGT 512
Query: 405 REETEIFIAAT 415
+++E+ I
Sbjct: 513 TQKSELIILLK 523
>gi|297181980|gb|ADI18156.1| type II secretory pathway, component puld [uncultured
Verrucomicrobiales bacterium HF0200_39L05]
Length = 800
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/314 (16%), Positives = 100/314 (31%), Gaps = 66/314 (21%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---------------------------------G 221
QV ++ I V ++G +
Sbjct: 437 QVLIEAIIVNVTLTDGMEMGVNAFMHEAAGPGDTRHIGGFMNGGPSTAGAAPSTPPTVNN 496
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--------FETVLHALERATAIRTLA 273
+ ++ + G + FS E + AL +++ + L
Sbjct: 497 GAEQGGGDNVSNVAAAAGNALGSLGAGALSGGFSYISRYDNSLEFAMSALANSSSAKVLQ 556
Query: 274 EPTLTAISGQSASFTSGGQHLYKTV----------------SSSTGATSVTTHDYGVVLH 317
P + A+F +G Q Y+ G + G+ L
Sbjct: 557 TPRVQTSHAVPATFFNGEQVPYQGSSGYGGYGGGYGGYGGYGGYGGGGYTQFLNVGITLD 616
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTI 368
TP + + + IQ +SE ++ G P R+A +TV + G TI
Sbjct: 617 VTPYITPDDLVVMEIQQTISELDGFIDMGGGQQGSSGMKAPQTTEREAASTVSVRDGDTI 676
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
+L G +++ + G+P L IP+LG LF+N + +E+ + P ++K L
Sbjct: 677 LLGGFIRNSKTGTESGVPFLKDIPLLGNLFKNESNTNKRSELLVLIRPTILKSPEDAALI 736
Query: 429 RPDDHYSVEDDAKA 442
+ + +A
Sbjct: 737 VSQERQRLPGIREA 750
>gi|220915838|ref|YP_002491142.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans
2CP-1]
gi|219953692|gb|ACL64076.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans
2CP-1]
Length = 902
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 60/323 (18%), Positives = 109/323 (33%), Gaps = 59/323 (18%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V+ D + L + + Q QV ++ I EV
Sbjct: 451 SGEVKITADKTQNALLVQASGADFSAVQRLVEKLD--------RPRRQVFVEAVIMEVNL 502
Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247
++G S TG + S A GG G S
Sbjct: 503 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVNSLDMSSAIALGGFLTGYTGPISAEL 562
Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-- 303
G + S ++ AL+ + + L+ P L A + + T G +++ + +G
Sbjct: 563 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPSGLS 622
Query: 304 --------------------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
+ + + L P + G I L I+ E +
Sbjct: 623 NLLSGSGTGASSTVGSALGTQGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQT 681
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
E + + P+ R T + TIV+ GL++D + IP L +PILG L
Sbjct: 682 EEIAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWL 741
Query: 398 FRNSRFNREETEIFIAATPFLVK 420
FR++ +++ + + TP++++
Sbjct: 742 FRDTTTTKQKVNLLLFLTPYIIR 764
>gi|15838128|ref|NP_298816.1| general secretory pathway protein D precursor [Xylella fastidiosa
9a5c]
gi|9106563|gb|AAF84336.1|AE003982_9 general secretory pathway protein D precursor [Xylella fastidiosa
9a5c]
Length = 775
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 112/291 (38%), Gaps = 41/291 (14%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235
V+ L++ QV ++ +AEV G S +G S G
Sbjct: 474 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 532
Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283
S G K + + +++AL++ T +R L P++ +
Sbjct: 533 AGLPSAAGRSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 592
Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
A+ G + + S +TG +SV D GV+L P V G + L I EVS
Sbjct: 593 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 652
Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
P + +A R+ T + SG TI+LAGL+ + + G+
Sbjct: 653 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 712
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
P LSK+PI+G LF N EI + TP +V+ ++ D YS
Sbjct: 713 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 761
>gi|15606504|ref|NP_213884.1| general secretion pathway protein D [Aquifex aeolicus VF5]
gi|2983708|gb|AAC07271.1| general secretion pathway protein D [Aquifex aeolicus VF5]
Length = 625
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/261 (20%), Positives = 103/261 (39%), Gaps = 26/261 (9%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
Q+ L TI E + + G + I G+ G + ++ + G+F + G
Sbjct: 331 KRRKQLLLTATIIEASAKSILEAGIRWQILGTHGGAAFKGSSLQDVYNAIKSGNFVIGGF 390
Query: 251 LDRF-------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ LE+ T ++ P + + Q A G + T
Sbjct: 391 SKSGTTVSIGGIDFFFPDLVFLFSLLEQGTGFNVVSNPKILTLDNQEALIKVGQVVPFPT 450
Query: 298 VS----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGD 347
+ + D G+ L TP + + L I+ ++ E +
Sbjct: 451 GIKYDVNGNPIITYDYKDVGLELKITPRITGE-TVRLVIELKLQEITGYLTNEVSGVNYT 509
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P R+ ++ V + +G T+V+ GL+ + E IP L IP++G LFR R +++
Sbjct: 510 VPITSNRELNSDVVVENGRTVVIGGLISRKSLKSTEKIPGLGDIPVMGRLFRYDRDEKDK 569
Query: 408 TEIFIAATPFLVKPVAMRDLS 428
T +FI TP+++ + ++L+
Sbjct: 570 TSLFIFLTPYVI--TSPQELA 588
>gi|323388142|gb|ADX60338.1| outer membrane type III secretion porin RscC [Pseudomonas
fluorescens]
Length = 713
Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats.
Identities = 50/288 (17%), Positives = 91/288 (31%), Gaps = 18/288 (6%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L R + +++++ L++A + V + I ++
Sbjct: 285 LTPRAPVSTSKIRVEADVRNNAILIYDLPERQAMYRELISQLDVARKL-VEIDAIILDIE 343
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
R L++ G + S + A + + R F + ALE+
Sbjct: 344 RTQLREFGIRWGFQNSRFRGGVNMAPGSSSQL----------SIEHRDRFNADIRALEQR 393
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL--- 323
++ P++ + Q A + + +T G P V+
Sbjct: 394 GLATMVSNPSVLTLENQPAVIDFNRTQYLTAGTETATILPIT---VGTSFQVVPRVITTR 450
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
+I L + E A P R K T + ++V+ G + +
Sbjct: 451 GNHQIHLVVDIEDGNFDESNPARTSPDVRRGKVSTQAVMAEKRSLVVGGFHVTESTDKQS 510
Query: 384 GIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
IPLL IP+LG ALF +S E TP ++ A P
Sbjct: 511 KIPLLGDIPLLGKALFSSSERQNNRRERLFILTPRVIGDQADPSRYLP 558
>gi|171060554|ref|YP_001792903.1| type II and III secretion system protein [Leptothrix cholodnii
SP-6]
gi|170777999|gb|ACB36138.1| type II and III secretion system protein [Leptothrix cholodnii
SP-6]
Length = 760
Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/429 (15%), Positives = 138/429 (32%), Gaps = 69/429 (16%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P E A + + + + I+ +++ + + + V D D
Sbjct: 182 PVTLEFRDAPLKLVLEALARSAGINFIMDREVRPDLK---ASIFVRDVRVEDALDLLIHN 238
Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
+ + T+ ++ + + ++ + D LR +
Sbjct: 239 HQLEKKILTDNTVLVYPNTP-----QKLREHQELVMRTFHIGNADPKQTLNLLRTMLKVR 293
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
++ ++ + + L I+ ++R ++ +
Sbjct: 294 DVFIDERVNLLFLRDTPDVIRAAERL--IAAQDKADPE---------------------- 329
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
V L++ I EV R ++ +G + + G S + + G +
Sbjct: 330 -VVLELEILEVSRTKVRDLGITYPSEFAGPGSSGAKLFEIG----------ELNRRTIGV 378
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------- 305
L L +TLA P + + + A G + + +
Sbjct: 379 DTGYKLKLLRTDGDTKTLANPRVRVRNREKARVHVGDRVPVISSTIVGTTNLGSNNTPVT 438
Query: 306 --SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360
+ D G+ + PT+ + + + I +VS R A T +
Sbjct: 439 TEQIQYLDVGIKIEAEPTIYADDSVAISINLDVSSLGNQTRTNAGTTAYEVGTRNASTVL 498
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L G T L GL++DD Q G+P L + P+L +F + R +R E+ + TP LV+
Sbjct: 499 RLRDGETQALMGLIRDDDVQTGAGLPYLGEFPVLDRIFGSKRTDRRSRELVLLITPQLVR 558
Query: 421 PVAMRDLSR 429
+ D +
Sbjct: 559 GIEPADATL 567
>gi|134095138|ref|YP_001100213.1| mannose-sensitive hemagglutinin L [Herminiimonas arsenicoxydans]
gi|133739041|emb|CAL62089.1| Putative general secretion pathway protein D [Herminiimonas
arsenicoxydans]
Length = 581
Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats.
Identities = 59/331 (17%), Positives = 108/331 (32%), Gaps = 58/331 (17%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L +V + +D + V ++ + S + ++ + QV L+ I EV
Sbjct: 223 LDAIVGSGKDGRSVVISPQSGVVVVKAMPDELRSVSAYLKATQLSVDRQVILEAKILEVE 282
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------------ 254
+ Q G S + S + G + G + +D
Sbjct: 283 LNDGFQTGVNWSAFRTGSSRISGGSISPGTVLQTGGSLATGASSIDATARTFSGGQLTAL 342
Query: 255 -----------------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
+F ++ LE + L+ P + ++ Q A G
Sbjct: 343 PGQDLLSGVSNLGSMFGLALQTKNFAALISFLETQGNVHVLSSPRIATLNNQKAVLKVGT 402
Query: 292 QHLYKTVSSST------------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
+ T SS ++ GVVL TP + G I L I VS+
Sbjct: 403 DEFFVTNVSSNITSSGTGGNTVTPNVTLQPFFSGVVLDVTPQIDEQGNIILHIHPSVSDV 462
Query: 340 VIGVNAGDMPS-----------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
++ + + D+ V G I L GL++ + +P
Sbjct: 463 QTSEKVINLGTGGGVLTLPLAKSNTSETDSVVRAQDGNIIALGGLMRQGTSSDRSQLPGA 522
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P+LG LFRN+ + ++ E+ I P ++
Sbjct: 523 GDVPVLGNLFRNTNQSTQKRELVILLKPTII 553
>gi|307579783|gb|ADN63752.1| general secretion pathway protein D [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 721
Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 111/291 (38%), Gaps = 41/291 (14%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235
V+ L++ QV ++ +AEV G S +G S G
Sbjct: 420 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 478
Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283
S K + + +++AL++ T +R L P++ +
Sbjct: 479 AGLPSAAARSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 538
Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
A+ G + + S +TG +SV D GV+L P V G + L I EVS
Sbjct: 539 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 598
Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
P + +A R+ T + SG TI+LAGL+ + + G+
Sbjct: 599 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 658
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
P LSK+PI+G LF N EI + TP +V+ ++ D YS
Sbjct: 659 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 707
>gi|86157114|ref|YP_463899.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85773625|gb|ABC80462.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 897
Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 61/323 (18%), Positives = 108/323 (33%), Gaps = 59/323 (18%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V+ D + L + + Q QV ++ I EV
Sbjct: 446 SGEVKITADKTQNALLVQASGADFSAVQRLVEKLD--------RPRRQVFVEAVIMEVNL 497
Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247
++G S TG S S A GG G S
Sbjct: 498 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVSSLDMSSAIALGGFLTGYTGPISAEL 557
Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-- 303
G + S ++ AL+ + + L+ P L A + + T G +++ + G
Sbjct: 558 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPQGLS 617
Query: 304 --------------------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
+ + + L P + G I L I+ E +
Sbjct: 618 NLLSGSGTGGSSTVGAALGTQGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQT 676
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
E + + P+ R T + TIV+ GL++D + IP L +PILG L
Sbjct: 677 EEIAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWL 736
Query: 398 FRNSRFNREETEIFIAATPFLVK 420
FR++ +++ + + TP++++
Sbjct: 737 FRDTTTTKQKVNLLLFLTPYIIR 759
>gi|239905312|ref|YP_002952051.1| hypothetical protein DMR_06740 [Desulfovibrio magneticus RS-1]
gi|239795176|dbj|BAH74165.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 707
Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 7/224 (3%)
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G G + S G + G + G + E L AL + ++ L+
Sbjct: 474 GTSGQGFGLNFPALSSALTSASGLGAAGAGVNFLFGNIAGNVLEAQLTALAESNKVKILS 533
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
PT+T + SA +G Y + S + T+V + L P V+ + ++I
Sbjct: 534 SPTITTMENHSAFVENGMDVPYVSTSQNG--TNVQFAHATLKLEMLPHVVDNSNLRMKIV 591
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
+ + P R+ + + + G TIV++GL +D + + G+P LS IP
Sbjct: 592 VKDDQVDTTNTVQGNPFIYKRETQSNLVVEDGDTIVISGLTRDTVGDNEAGVPYLSDIPG 651
Query: 394 LGALFRNSRFNREETEIFIAATPFL-----VKPVAMRDLSRPDD 432
LG F+ + + EI+I TP + + P + RP D
Sbjct: 652 LGWAFKTKASSIKREEIYIFVTPTILKEKPISPPPAVAMIRPSD 695
>gi|238793311|ref|ZP_04636937.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
[Yersinia intermedia ATCC 29909]
gi|238727280|gb|EEQ18808.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
[Yersinia intermedia ATCC 29909]
Length = 486
Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 109/301 (36%), Gaps = 30/301 (9%)
Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
+ V L G+V +++ + ++ L S+ N + I
Sbjct: 184 QYRDQQVKLPGLVSVLREMSQGNSLPLVAGKEPDDVNTSMPLFSADPRQNAVIIRDRQVN 243
Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
Q+ + VTI +V + Q+G S + S G SF ++ G
Sbjct: 244 MPIYRSLIAQLDQRPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSNSG--- 300
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
D + D +F L+AL++ + R L+ P++ ++ A K
Sbjct: 301 -KNSADGFSTVIGDTGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL- 358
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
+ + G +L TP ++ + L + + + +++ + +P +
Sbjct: 359 -QGDKVAKLESITSGSLLRVTPRMIDADGVKEVLLNLNIQDGQQQAAISSSEPLPEIQNS 417
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T L G +++L G ++D + + IPLL IP+LG LFR++
Sbjct: 418 DISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 477
Query: 415 T 415
Sbjct: 478 K 478
>gi|301064238|ref|ZP_07204681.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2]
gi|300441683|gb|EFK06005.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2]
Length = 756
Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 53/278 (19%), Positives = 100/278 (35%), Gaps = 30/278 (10%)
Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------ 224
+ + K+++ L++ E QV ++ I E D + +G Q S
Sbjct: 478 ANGVRAKVDKVKELVRKLDVP-EKQVMIETRIVEATTDFARDLGIQWQSLDGSRPGVQRK 536
Query: 225 -----------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G + A G + + G L + + L + + ++
Sbjct: 537 WYNSDGTERFDGSFSTNAPANWGANIGLAFGWITDGGLGSLALDASLALAQDDGKAKIIS 596
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
P + ++ A G + + T + L TPTV + + + ++
Sbjct: 597 APKVMTVNNGPAEVARGTVRYFPIRTLDT--IDYKEIPALLSLTVTPTVSADDQ-HVTMK 653
Query: 334 TEVSEP---------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
EV++ P +K + + + +G T+V+ G+ + G
Sbjct: 654 VEVTDNRELPASTEQTEEGTTDSPPGRTEKKITSNLIVKTGDTVVIGGIYQKSEISSDSG 713
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
IP L IP+LG LF+ R +TE+ I TP +VK V
Sbjct: 714 IPWLKDIPLLGYLFKAERTQESKTELLIFLTPTVVKSV 751
>gi|300697020|ref|YP_003747681.1| type II secretory pathway, gspD-related protein [Ralstonia
solanacearum CFBP2957]
gi|299073744|emb|CBJ53265.1| putative type II secretory pathway, gspD-related protein [Ralstonia
solanacearum CFBP2957]
Length = 761
Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 70/418 (16%), Positives = 135/418 (32%), Gaps = 55/418 (13%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P + A + + + + I+ L+K + + V + D
Sbjct: 184 PINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDLILST 240
Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
+ + T+ ++ + ++ L + L+ +
Sbjct: 241 TQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNAEAKQTGAMLKTMLKIR 295
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
++ ++ VV+ + + A L E + N L
Sbjct: 296 EPYIDERANMVVIR---ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSSNKLT----- 347
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
Q+G Q+ + + + S + A +
Sbjct: 348 -----------------QLGIQYPNSFTLTPLSATGATSLTLSDFKGLNS----DRIGVS 386
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311
+ VL+ LA P + A + + A G + T +S++ + SV D
Sbjct: 387 TPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 446
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
G+ L P++ + ++I EVS + + R A+T ++L G T
Sbjct: 447 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHDGETQ 506
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+LAGL+K IP L IP+LG LF + N EI ++ TP +VKP +
Sbjct: 507 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPE 564
>gi|28198648|ref|NP_778962.1| general secretory pathway protein D precursor [Xylella fastidiosa
Temecula1]
gi|182681332|ref|YP_001829492.1| general secretion pathway protein D [Xylella fastidiosa M23]
gi|28056739|gb|AAO28611.1| general secretory pathway protein D precursor [Xylella fastidiosa
Temecula1]
gi|182631442|gb|ACB92218.1| general secretion pathway protein D [Xylella fastidiosa M23]
Length = 775
Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 111/291 (38%), Gaps = 41/291 (14%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235
V+ L++ QV ++ +AEV G S +G S G
Sbjct: 474 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 532
Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283
S K + + +++AL++ T +R L P++ +
Sbjct: 533 AGLPSAAARSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 592
Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
A+ G + + S +TG +SV D GV+L P V G + L I EVS
Sbjct: 593 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 652
Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
P + +A R+ T + SG TI+LAGL+ + + G+
Sbjct: 653 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 712
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
P LSK+PI+G LF N EI + TP +V+ ++ D YS
Sbjct: 713 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 761
>gi|212702669|ref|ZP_03310797.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098]
gi|212673941|gb|EEB34424.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098]
Length = 651
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 69/378 (18%), Positives = 124/378 (32%), Gaps = 47/378 (12%)
Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA--DSNIRVEMVSDTVVLHG-----MVR 152
D K + +A + + S + V+ + L G M
Sbjct: 185 YAWAEDMKVNSMDSTVTIPGVASILQAMANGTPLTGSQVTVQPSAQG-GLRGKGLIAMNA 243
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GED 194
+ SQ A S+ QSG + + +N + + +
Sbjct: 244 STDTSQAAPAASQGGKDQSGTPSGPSIIADPRVNAVVVTDAEYRMSYYAKVIADLDKPVE 303
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAADFGGKFVSEGGD 244
V + I ++ D + G S TG+ + G S S G + G
Sbjct: 304 LVEIHAAIVDIDSDFSRDFGVNWSGTGAYGKHWTGGGSAGGTSTSGIFPSAGASSAGGLS 363
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+S F + ALE R L +P++ + AS + + S +
Sbjct: 364 YSTLYSHGSDYFLARVTALEEDGQARVLGKPSVLTMDNVQASLENTSSYYVPV--SGNES 421
Query: 305 TSVTTHDYGVVLHFTPTVLSP-----GRIGLRIQTEVSEPVIG----VNAGDMPSYRVRK 355
+ + D G VL TP ++ I L + + V+ ++ + K
Sbjct: 422 SDLFKIDSGTVLKVTPHIIPGLPGQADSIKLMVSVQDDRDDGSNLFSVDPNNLSPIKQTK 481
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+T + G ++++ G + + GIP L IPILG LF + + E I T
Sbjct: 482 INTQAIVGEGQSLLIGGHYYEIQSDAETGIPGLKNIPILGGLFGATGKKHQRMERLILIT 541
Query: 416 PFLVKPVAMRDLSRPDDH 433
P +V+ ++ D
Sbjct: 542 PRIVRMDTASNVPTRVDD 559
>gi|300690947|ref|YP_003751942.1| type II secretory pathway, gspd-related protein [Ralstonia
solanacearum PSI07]
gi|299078007|emb|CBJ50649.1| putative type II secretory pathway, gspd-related protein [Ralstonia
solanacearum PSI07]
Length = 759
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 75/418 (17%), Positives = 143/418 (34%), Gaps = 55/418 (13%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P + A + + + + I+ L+K + + V + D
Sbjct: 184 PINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDLILST 240
Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
+ + T+ ++ + ++ L D L+ +
Sbjct: 241 TQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNADAKQTGAMLKAMLKIR 295
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
+ ++ ++ VV+ +S V L+E + RN +V+ + +
Sbjct: 296 DPYIDERTNMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS----- 343
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
L Q+G Q+ + + + S + A +
Sbjct: 344 -------------TKLTQLGVQYPNSFTLTPLSATGATSLTLSDFKGLNS----DRIGVS 386
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311
+ VL+ LA P + A + + A G + T +S++ + SV D
Sbjct: 387 TPNVVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 446
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
G+ L P++ + ++I EVS + + R A+T ++L G T
Sbjct: 447 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRTANTVLKLHDGETQ 506
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+LAGL+K IP L IP+LG LF + N EI ++ TP +VKP D
Sbjct: 507 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPD 564
>gi|71905856|ref|YP_283443.1| type II and III secretion system secretin [Dechloromonas aromatica
RCB]
gi|71845477|gb|AAZ44973.1| type II and III secretion system protein:NolW-like:Secretin/TonB,
short N-terminal [Dechloromonas aromatica RCB]
Length = 715
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 95/256 (37%), Gaps = 27/256 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKF---- 238
G QV ++ + E + + +G + GS + + G
Sbjct: 453 TGARQVLIEARVVEAQDSFNRALGGKFGFLNKQAVQPAGSGINVAGGSSTTAGQSTSTPM 512
Query: 239 -------VSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
S GG ++ FS L ALE + ++ P + + A
Sbjct: 513 VGVNLPSPSTGGSLALSLFTASFSRILNLELAALESDGLGKIVSSPRVITANNVKAKIED 572
Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----V 343
G + Y T SS G T +V+ + L TP + G + + + + E +
Sbjct: 573 GTEIPYVTTQSSGGTTTATVSFKPAKLSLEVTPQITPEGTVRMNLVVKKEEADWTKAVVL 632
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
N P + +T V + +GGT+V+ G+ D Q E +PLL IP G LF+
Sbjct: 633 NGYANPPIKSSVVETNVVVENGGTVVIGGVFITDTQNSVEKVPLLGDIPFFGWLFKYKND 692
Query: 404 NREETEIFIAATPFLV 419
+ E+ + TP ++
Sbjct: 693 IGKRRELLVFITPRVI 708
>gi|254496546|ref|ZP_05109416.1| type II protein secretion LspD [Legionella drancourtii LLAP12]
gi|254354245|gb|EET12910.1| type II protein secretion LspD [Legionella drancourtii LLAP12]
Length = 482
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 58/368 (15%), Positives = 128/368 (34%), Gaps = 28/368 (7%)
Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149
G +G + ++ + T + S S G
Sbjct: 95 VGTTMGTITRPALDSTNPASNLVNSSSNSQNTNSSSTTASPLNSSGATANTSSANTQNEG 154
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + S + + T K+V+ L+I Q+ ++ +AE+ ++
Sbjct: 155 ---STKPSVQIIGEPNTNSIILNAPASVIRVLKRVIAQLDIK-PAQLLIEALVAEINQED 210
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
+G + + S G + F+ ++AL RA
Sbjct: 211 ANDLGIEWGSDQQTGKASGFR-----------NGFAIINSQTKGADFQAQIYALARAHKA 259
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVS----------SSTGATSVTTHDYGVVLHFT 319
L+ P++ + + A G Q + + SS+ T+ + + L+
Sbjct: 260 NILSTPSVVVLDNRQAKILVGKQVSVASSNYPNNANGTAASSSPYTTFDRVNVALHLYVR 319
Query: 320 PTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
P + I ++I +P + P++R+ T+V + SG +VL GL +D
Sbjct: 320 PQITRGNGIQMQIDQGNDTLDPPVAAETSTTPTFRISSIVTSVHVESGNVVVLGGLTQDS 379
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+ +P+L IP +G LF+ + R++ + + P +++ +++ D Y+
Sbjct: 380 LSNDNNRLPILGDIPGIGRLFKRNVNTRDKRVLMVFIKPIILRN-ERENMNLTHDKYNHT 438
Query: 438 DDAKAFFF 445
+ +
Sbjct: 439 RQYELDWL 446
>gi|83746420|ref|ZP_00943472.1| GspE-related protein [Ralstonia solanacearum UW551]
gi|83726961|gb|EAP74087.1| GspE-related protein [Ralstonia solanacearum UW551]
Length = 744
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 66/460 (14%)
Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV--- 79
AK P + A + + + + I+ L+K + + V + D
Sbjct: 163 AAKQPINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDL 219
Query: 80 ---------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
+ + T+ ++ + ++ L + L+
Sbjct: 220 ILSTTQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNAEAKQTGAMLKTM 274
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ ++ ++ VV+ +S V L+E + RN +V+ + +
Sbjct: 275 LKIREPYIDERANMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS- 326
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
L Q+G Q+ + + + S + A
Sbjct: 327 -----------------TKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNS----DR 365
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSV 307
+ + VL+ LA P + A + + A G + T +S++ + SV
Sbjct: 366 IGVSTPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESV 425
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPS 364
D G+ L P++ + ++I EVS + + R A+T ++L
Sbjct: 426 QYIDVGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHD 485
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G T +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP
Sbjct: 486 GETQLLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP--- 542
Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
+ E + F+ + + +
Sbjct: 543 --------SHRPETNFMEFWSGTETNARARRTLPDGQAPA 574
>gi|218887514|ref|YP_002436835.1| type III secretion outer membrane pore, YscC/HrcC family
[Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758468|gb|ACL09367.1| type III secretion outer membrane pore, YscC/HrcC family
[Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 666
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 51/287 (17%), Positives = 97/287 (33%), Gaps = 25/287 (8%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAAD--------FGGKFVSEGGD 244
V + I ++ D + +G + T G F+ GK + G
Sbjct: 319 VEIHAAIVDIDSDYKRDLGVTYQGTAGSGQRWAGGGDFSTGTDAFPTLPSPGKPLGNGLT 378
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
S + F + ALE+ R L P++ + A+ + + A
Sbjct: 379 LSTIYTMGSDYFLAQVTALEKNGEARMLGRPSVLTVDNVQATLENTSTYYI--EVQGYQA 436
Query: 305 TSVTTHDYGVVLHFTPT--VLSPGRIGLRIQTEVSEPVI-------GVNAGDMPSYRVRK 355
+ + G VL TP G +++ V + N+ +P + K
Sbjct: 437 VDLFKVEAGTVLRVTPHIIRNEDGGQSIKLVVSVQDDQNDNSSATSTSNSTAIPPVKQTK 496
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+T + G ++++ G + GIP+L IP+LG LF+ + + E I T
Sbjct: 497 INTQAIVGGGQSLLIGGYYYEQKSTTDTGIPILMDIPVLGHLFKTNSKTSKRMERLILIT 556
Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
P +V+ + +L + ++ N+ G
Sbjct: 557 PKVVR---LNELPATPERVDDPSFHRSATQGDYNEKVPAPAPRRSGG 600
>gi|74316567|ref|YP_314307.1| putative Type II secretory pathway component PulD [Thiobacillus
denitrificans ATCC 25259]
gi|74056062|gb|AAZ96502.1| putative Type II secretory pathway component PulD [Thiobacillus
denitrificans ATCC 25259]
Length = 581
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 24/271 (8%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ ++ ++ + + + QV ++ TI EV + G S +
Sbjct: 287 GTAKQQALVQQYLDRVMQSAQRQVLIEATIVEVTLKDQYRAGIDWSKALEGTTGWTINTL 346
Query: 233 DFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G ++ ++ F + LE + L+ P L A++ Q+A
Sbjct: 347 SGGSNALANTLTPFIQATYTNAGSNGFTAAIDLLESFGKAKVLSSPKLMALNNQTALLKV 406
Query: 290 GGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
+Y V + T AT + T G+V+ TP + G + L ++ +S
Sbjct: 407 VDNLVYFNVKADTTATANVGTTTTFTTTPQTVPVGIVMTMTPQINENGMVSLTVRPTISR 466
Query: 339 PVIGVNA----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
V V +P +VR+ ++ +++ SG T++L GL++DD ++GIP L
Sbjct: 467 NVGFVRDPNPSIPVAIPNQVPVIQVREMESLLQVRSGQTVILGGLIQDDSNNARDGIPGL 526
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
S+ +GA+F +TE+ I P +V
Sbjct: 527 SRPEGIGAVFGQHEQINSQTELVIFLRPIVV 557
>gi|115524675|ref|YP_781586.1| general secretion pathway protein D [Rhodopseudomonas palustris
BisA53]
gi|115518622|gb|ABJ06606.1| general secretion pathway protein D [Rhodopseudomonas palustris
BisA53]
Length = 789
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 9/266 (3%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R + + ++ + ++ QV ++VTIAE+ Q G Q
Sbjct: 496 RVTPDVTNNVLFVETTPQTYAVVERAIREMD-RFPTQVNIEVTIAEITLTSELQYGVQFF 554
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ + A+ + G + +LD + VL AL + T+++ L+ P+L
Sbjct: 555 LKSGNFSAGLGGASGIPLRTSYPGLNLVSGALLDP---QVVLDALAQFTSVKVLSSPSLV 611
Query: 279 AISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
+ Q A G Q + S+ ++V D G++L+ P V + G + L ++
Sbjct: 612 VLDRQPAVLQVGDQIPILTRQLTSAESTATVSNVDLKDTGIILNVLPRVNANGLVTLNVE 671
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
++S V P+ R+ + + + SG T++LAGL+ D + G+P++S+I +
Sbjct: 672 QQISNVVSTQPDTLTPTISQRRVKSVISVSSGQTVLLAGLITDGQNINRNGLPVVSQIKV 731
Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
L L + TE+ I P ++
Sbjct: 732 LSDLLSSHDRTASRTELIIFIRPKII 757
>gi|182413440|ref|YP_001818506.1| type II and III secretion system protein [Opitutus terrae PB90-1]
gi|177840654|gb|ACB74906.1| type II and III secretion system protein [Opitutus terrae PB90-1]
Length = 673
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 69/371 (18%), Positives = 124/371 (33%), Gaps = 46/371 (12%)
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI--------- 154
+ + L + L + ++ N + + T G VR
Sbjct: 276 AEPNTRNEVIYLKHASAKDVAPLLSQLVSGQNTAAQKAAGT---SGSVRAPVPQPNQPNQ 332
Query: 155 -QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------DQ 195
AV L+ + + + Y + N + ++G Q
Sbjct: 333 AATPDAAVALAGATVDTNEFSSYITILPDERSNSIVVSGTVDDIRLIRDLVEKVDILLAQ 392
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
V ++V IAEV D + G ++ S G +GV++ +
Sbjct: 393 VRIEVIIAEVTLDDSNKTGLSALNLTVATPQGSSQGTHITNFAGKVAGWDISQGVVNPLA 452
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------------- 302
F+ L + ++ L+ PT+ + A G T +T
Sbjct: 453 FQAALGDAGTRSNVKILSAPTIVTTHNKEAQILVGESLPIITGIYTTAVGSTTPTEPGFA 512
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTV 360
VT D + L TP + G I L+I +V + I +N D P R+A + +
Sbjct: 513 QNQQVTYKDIAIDLKVTPLIGDDGSIQLKIDQKVDDVVRTISINNSDQPVIGRRQATSFI 572
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G +VL GL + + + + L +IPIL LF + TE+ + P ++
Sbjct: 573 NVSDGQIVVLGGLQRTANTRGRNKLGFLVEIPILSHLFGARTNSVRRTELLLFIRPHVIA 632
Query: 421 PVAMRDLSRPD 431
P A +
Sbjct: 633 PDAGTADATNT 643
>gi|254186538|ref|ZP_04893055.1| general secretion pathway protein D [Burkholderia pseudomallei
Pasteur 52237]
gi|157934223|gb|EDO89893.1| general secretion pathway protein D [Burkholderia pseudomallei
Pasteur 52237]
Length = 316
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 14/222 (6%)
Query: 212 QIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
Q G +SI ++G + G G + + + +L ++
Sbjct: 4 QTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDA 63
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPT 321
L+ P L + + A G T S S + T D G+ LH P
Sbjct: 64 NVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQ 123
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDD 377
+ G + L++ TE S V G N P++ R +TV +G IVL GL++D+
Sbjct: 124 ITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDN 183
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
Q +PLL IP +G LFR+ R++T + + P ++
Sbjct: 184 YQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 225
>gi|312897631|ref|ZP_07757048.1| bacterial type II/III secretion system short domain protein
[Megasphaera micronuciformis F0359]
gi|310621264|gb|EFQ04807.1| bacterial type II/III secretion system short domain protein
[Megasphaera micronuciformis F0359]
Length = 372
Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats.
Identities = 69/393 (17%), Positives = 138/393 (35%), Gaps = 68/393 (17%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV------VHSPR 85
A+ + +G+ ++I +++ + + V + +V + V+ +
Sbjct: 31 AHDVPLRTILEGLGRSAGMNILIDESVKGNITVYLHNVS-AQEALQSVIHEAGLCLEEKN 89
Query: 86 TMYLF-GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
+ L G+ GQ K + L A + ++ S+
Sbjct: 90 GIILIEGEGEGQ----------KTVSEAFPLSYMKAADAAEVAGVALHQGSVMAVGGSNA 139
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
+V+ G + +++ V+ + QV ++ I
Sbjct: 140 IVMTGRHSDVTAAKQLVQAVD-------------------------RAPQQVDVEAEILS 174
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
+ ++ +K++G S + G K E LHA
Sbjct: 175 LNKEAVKELGIDWSWSEGGGGVGKPRL----------------------PYIEARLHAFV 212
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTV 322
LA+P + A +G A G + T + G + G++L +TP +
Sbjct: 213 SDGKASILAKPHIMATNGTEARIFIGDRIPVVTERVTGGERYATTEYKEAGILLQYTPYI 272
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ G + I EV PV V R+ DT V + +G IV+ GL+ + +
Sbjct: 273 HTDGTVTANIHGEVGMPVY-VRDLRAYRVATRQVDTQVHIKAGERIVIGGLIGKEETENL 331
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+P+L +P++G LFR+ +++ETE+ I
Sbjct: 332 RKVPILGDLPLIGKLFRSRYRSKKETEVIILIK 364
>gi|283852780|ref|ZP_06370044.1| type II and III secretion system protein [Desulfovibrio sp.
FW1012B]
gi|283571861|gb|EFC19857.1| type II and III secretion system protein [Desulfovibrio sp.
FW1012B]
Length = 634
Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats.
Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 6/216 (2%)
Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
G S G + + + G + G + G + E L AL I+ L
Sbjct: 401 FGGGTSGQGFAINNPANLTSAATGLGAAGTGLNFLFGKIGENVLEAQLTALAEENKIKIL 460
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ PT+T + SA +G Y + S + T+V + L P V+ + ++I
Sbjct: 461 SSPTITTMENLSAFVENGKDIPYVSTSQNG--TNVQFAHATLKLEMLPHVVDGSNLRMKI 518
Query: 333 QTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ + P R+ + + + G TIV++GL +D + G+P L
Sbjct: 519 VVKDDQVDPNQGNWVQGNPPIYKRETQSNLVVEDGDTIVISGLTRDTVTDANSGVPFLRD 578
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV--KPVAM 424
IP LG F+ + E+ I TP ++ KPVA
Sbjct: 579 IPGLGWAFKAKSSDIHREEMLIFITPVILQEKPVAP 614
>gi|120609177|ref|YP_968855.1| YscC/HrcC family type III secretion outer membrane protein
[Acidovorax citrulli AAC00-1]
gi|58700619|gb|AAW81010.1| HrcC [Acidovorax citrulli]
gi|120587641|gb|ABM31081.1| type III secretion outer membrane pore, YscC/HrcC family
[Acidovorax citrulli AAC00-1]
Length = 683
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 56/294 (19%), Positives = 109/294 (37%), Gaps = 16/294 (5%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN--IAGEDQ----VTLKVTIAEV 205
T + +A E F + G N M+ I DQ V L+ TI EV
Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEV 457
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
D + +G S+ +S S + S S + ++ALE
Sbjct: 458 NSDSVDALGVNWSLRAGTSSISTNL------PGPSTPAALSTIVLDAGRHLLANVNALEA 511
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS- 324
R L++P++ ++ ++A + + + ++ + G +L TP V
Sbjct: 512 QGKARILSKPSVLGVANRAAVM--REKRVATVRVAGNLEANLFQIEAGTLLQMTPQVTPV 569
Query: 325 PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
G+ +++ + + N +P + + T + G ++++ G+ +
Sbjct: 570 DGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQDN 629
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+P LSK+P++G +FRN+ TE TP ++ A +S
Sbjct: 630 AVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVIAQDAPTTVSSISPEVRKP 683
>gi|90417988|ref|ZP_01225900.1| putative general secretion pathway (GSP) protein D [Aurantimonas
manganoxydans SI85-9A1]
gi|90337660|gb|EAS51311.1| putative general secretion pathway (GSP) protein D [Aurantimonas
manganoxydans SI85-9A1]
Length = 700
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 63/285 (22%), Positives = 122/285 (42%), Gaps = 14/285 (4%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGED-QVTLKVTIAEVR 206
G + D ++ + + S + KV+ L +I QV + VT+AEVR
Sbjct: 392 GASGGMLDGATSLRIEPDLSNNSLVIYGDRAVRGKVLQALAHIDVPQMQVAVNVTMAEVR 451
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----FSVKGVLDRFSFETVLHA 262
+ + G Q+ I G + + + +++G V S + VL+A
Sbjct: 452 LNDQLRYGVQYFIKSGDIGLGRDKGSVGLFRTIADGIAREVPGFNFVVGSESSPDIVLNA 511
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVV 315
L+ T +R L+ P+L + + A F G Q T + ++ V D G++
Sbjct: 512 LDAVTDVRVLSSPSLVVMENEVAKFRVGDQIPIVTRTVNSVEDANAPISNEVEYRDTGII 571
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
++ P + G + + I+ E+S + P R +T+ + G T++L GL+
Sbjct: 572 MNVRPRIAENGVVTMVIEQEISSVTANAGSLT-PVISNRSVASTISVVDGQTVLLGGLIS 630
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ ++GIP L+++ ++G LF + TE+ I P +++
Sbjct: 631 EQSDVGRDGIPGLNRLKVVGNLFGSKSRADVRTELLILIRPSVIR 675
>gi|319955805|ref|YP_004167068.1| general secretion pathway protein d [Nitratifractor salsuginis DSM
16511]
gi|319418209|gb|ADV45319.1| general secretion pathway protein D [Nitratifractor salsuginis DSM
16511]
Length = 664
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 110/288 (38%), Gaps = 22/288 (7%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
V E + +V++ +++ QV +K + E+ + I
Sbjct: 300 APQKAMVVADVERNALIVLATGEQYQNIMQVIHRIDVEKP-QVFIKARVVEINSKKARAI 358
Query: 214 GFQHSITGSSSGPSK--SFAADFGGKFV------------SEGGDFSVKGVLDRFSFETV 259
G ++ ITG S + GG+ V S+ FS+ V F+
Sbjct: 359 GAKYGITGGWLTSHGLISVGGNMGGEAVNISQRLMSLVQQSDDNAFSLSDVKSLFALGIN 418
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYG 313
+ L++ A L+EP++ + + G T S++ + D G
Sbjct: 419 IDLLQQDGAAHVLSEPSILCTNNMESELFVGETRSILTSSTAGDNKNDLSRNNYEREDIG 478
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAG 372
+ L P + S ++ L++ + + P+ R T + +G T++L G
Sbjct: 479 LTLKVKPRLSSNNKVALKVDAIIEDVDDSSGYNSPTPTTTKRTITTNATVRNGQTVILGG 538
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L+K+ +P IPI+G LFR+ + + ++ I TP++V+
Sbjct: 539 LIKNLTGAAHNKVPFFGDIPIIGRLFRDEGTAQRKVDLVIYLTPYVVR 586
>gi|9626242|ref|NP_040579.1| G IV protein [Enterobacteria phage Ike]
gi|138049|sp|P03667|G4P_BPIKE RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
Short=G4P; Flags: Precursor
gi|14956|emb|CAA26076.1| unnamed protein product [Enterobacteria phage Ike]
Length = 437
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 49/238 (20%), Positives = 94/238 (39%), Gaps = 11/238 (4%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
DQV ++ + E + F + G + GG F G+
Sbjct: 204 ARDQVLIQSLMFETSLVNGVDLSFAAGSASGDKVAGGFNTSALGTALSTAGGSF---GIF 260
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGA 304
+ + A++ + + ++ P + SGQ+ + G + T +
Sbjct: 261 NGNVLALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTGEAANVNNPF 320
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
++ D GV L TP V+ G++ L I T+ + A D+ R TTV++
Sbjct: 321 QTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASDI-ITNQRHMQTTVQIKD 379
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
G T++L GL+ + +P +P++G LFR+ + E +F+ T ++K +
Sbjct: 380 GQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAHVIKAL 437
>gi|118594956|ref|ZP_01552303.1| general secretion pathway protein D [Methylophilales bacterium
HTCC2181]
gi|118440734|gb|EAV47361.1| general secretion pathway protein D [Methylophilales bacterium
HTCC2181]
Length = 1061
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 59/292 (20%), Positives = 110/292 (37%), Gaps = 30/292 (10%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L G V + + + +Q A K ++ L Q+ ++ + E+
Sbjct: 495 LAGQVSSQL-----------LVIYNPNDQKALLRVNKAISELIDRPAKQILIEGIVLEIA 543
Query: 207 RDILKQIGFQHSITGSSS-----GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
L ++G S T ++ G + G + + G SF L
Sbjct: 544 SSELSKLGVNWSTTRTNGSIISLGTLAEITSVAAGSAAASVAYTTAGGTGAGPSFAANLE 603
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHF 318
AL T + L++P+L + + AS G ++ S T G++L+
Sbjct: 604 ALITKTKSQVLSKPSLMTLDNRQASIKVGTNIPIAASVTTAVGASTAGFTYLPVGIMLNI 663
Query: 319 TPTVLSPGR-IGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGT 367
P + + I + I +S+ GV P+ +RK T + +
Sbjct: 664 RPRISDDNQEISMLIDATISQKVDDEDVIIYNSTGVAMASAPTTTLRKIQTYARVNNESP 723
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++AGL+ G+P+LS IP+LG LF + +TE+ + TP ++
Sbjct: 724 LIIAGLVSKQKTMTTTGVPVLSSIPLLGGLFSFESPSNVDTEVVLIITPTII 775
>gi|74317318|ref|YP_315058.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
25259]
gi|74056813|gb|AAZ97253.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
25259]
Length = 667
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 71/437 (16%), Positives = 142/437 (32%), Gaps = 60/437 (13%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P E A + I + I+ +K + + V + V +
Sbjct: 182 PITLEFRNADLKAIFEVISRSAGINFIFDKDVRQDL---VASIFVRNTRIESAIDFLLMS 238
Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
V + T+ ++ + L D ++ +
Sbjct: 239 NQLAKKVLNENTVLVYPNIPAKT-----RDYQDLRAKTFYLASMDAKQALNIVKTIVKTR 293
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
++ ++ +T+V+ A+ L+E L + +V+ +
Sbjct: 294 DVVIDEKLNTLVMRDTP-------DAIRLAEKLLGSQDLAESEVLLEVEVLEVS------ 340
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
R L IG + S A + G++
Sbjct: 341 ------------RSRLSDIGITPPTEATFRTLGPSGAPSTTLADLKGLNS----GLIGVS 384
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVT 308
S + A LA P + + + A G + T + ++ +V
Sbjct: 385 SLSASVRARMDNGDTNLLANPRIRVKNREKAKVHIGERVPIITTTVTSAGTTSFLPETVN 444
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSG 365
D G+ P + + +++ EVS + + ++ R A TT+ L G
Sbjct: 445 YLDVGIKFEVEPLISLNDEVTIKVALEVSSLGQKSVTKSGSEVYRVGTRNASTTLALRDG 504
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
T LAGL+ D+ ++ GIP +IP +G LF + + ++TEI + TP +V+ +
Sbjct: 505 ETQALAGLISDEERETVNGIPGFGRIPAIGRLFASKSNSTDKTEIVLLITPHIVRNLDRT 564
Query: 426 DLSRPDDHYSVEDDAKA 442
L+ D ++ D+ A
Sbjct: 565 ALTASD--FAAGTDSAA 579
>gi|251772573|gb|EES53138.1| putative general secretion pathway protein D [Leptospirillum
ferrodiazotrophum]
Length = 565
Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats.
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 8/195 (4%)
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
G G ++ + +L+ALE + +RTL+ P + A G A T G
Sbjct: 314 NGLVAGVLTGGTFKYNGVNYPNIGELLNALETYSDVRTLSTPEILATDGVKAKITIGEDV 373
Query: 294 LYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM- 348
+ T S T + + G+ L TP +LS R+ L ++ +S
Sbjct: 374 PFITGQSQTVGGNVMTMIQRQNVGITLELTPHILSHNRVRLDVKQTISALTNASQVIGTI 433
Query: 349 ---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
P+ R A T + + SG T+V+ GL+ + +GIP LS IPILG LF N+ +
Sbjct: 434 AVGPTTTKRSAKTNLTISSGQTVVIGGLISKETSINDQGIPFLSDIPILGYLFSNTNNEK 493
Query: 406 EETEIFIAATPFLVK 420
+ ++ I TP++++
Sbjct: 494 KRDDLLIFLTPYVIR 508
>gi|15596579|ref|NP_250073.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
gi|9947326|gb|AAG04771.1|AE004567_10 probable type II secretion system protein [Pseudomonas aeruginosa
PAO1]
Length = 759
Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 23/291 (7%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
+L G+ I S VE + ++ ++ QV ++VT+A V
Sbjct: 442 LLGGLAAGISGSGTIVEDENRNAILFRGAARTWQQMQGLLREMDKPAR-QVLIEVTVASV 500
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+++G + + S + S + + G + A+
Sbjct: 501 SLSDTQELGVEWEMLNGSFNSATSTGSKGSAGKGGFNYVINTAGGN-----TAAIQAMAD 555
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTGATSVTTHDYGVVL 316
+R LA P + SG+ A+ G T S+ + G +L
Sbjct: 556 NQRVRVLATPRILVKSGEQANINVGRDIPIPTAQVNDDSTTAGSTNLRNEIAYRSTGTIL 615
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTI 368
+ P V S R+ L + E+S+ G P +T++ L SGG++
Sbjct: 616 NVAPVVYSDSRVDLTVSQELSDSGGSSGGGGKASGGGISAPEISRTSLETSLTLKSGGSV 675
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
++ GL++D+I G+PLL IP +G LF + + E+ + P+++
Sbjct: 676 LMGGLIRDNITDSNAGVPLLKDIPGIGFLFGRQKAVKTREEVIMLIQPYVL 726
>gi|284006883|emb|CBA72151.1| type III secretion component protein SctC [Arsenophonus nasoniae]
Length = 598
Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats.
Identities = 57/335 (17%), Positives = 117/335 (34%), Gaps = 32/335 (9%)
Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
L + + + + ++ ++ D I+V ++ +L MV + SQ +
Sbjct: 180 LPLAIQVFSLKYASAVDRIIK--YRDEQIQVPGLAT--ILANMVSAAEISQINDD---KI 232
Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVT----------------LKV--TIAEVRRDI 209
+SQ A + +N + + + ++V +I +V D
Sbjct: 233 ISQKPNGHKAMIQPEPSINAIIVRDLPERMPMYQRLIHSLDKPTARIEVALSIIDVNADN 292
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L ++G + G +G + S+ + L+
Sbjct: 293 LSELGIDWGV-GLKAGQHHQINIASTLTQAASPVLGSLLDKQGLNYLVAKVSLLQSQGIA 351
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG--- 326
+ +++PTL A + K + + YG +L TP V+ G
Sbjct: 352 QVVSKPTLLTQENTQAIIDHNETYYIKV--NGERVAELKGITYGTLLQMTPRVIQIGDKP 409
Query: 327 RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
I L + E ++ +P+ DT + G ++V+ G+ +D++ + +
Sbjct: 410 EIHLVLHIEDGNQKPNSSGVDGIPTINRTIIDTVARVEQGQSLVIGGIFRDEVIKTSRKV 469
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
PLL IP+LGALFR+ P ++
Sbjct: 470 PLLGDIPLLGALFRSQSNQTRRVVRIFIVEPKIID 504
>gi|149197164|ref|ZP_01874216.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155]
gi|149139710|gb|EDM28111.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155]
Length = 738
Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 17/242 (7%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGD 244
QV ++VT EV + GF+++ T G G S + FG + G
Sbjct: 470 QVMIQVTAVEVELGEGLEFGFEYAATDKFGSGDNESGVGVGSSTADTPSFGPPGGLDPGI 529
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSS 300
+ + + A+ ++ L P + ++G+ A G + SS
Sbjct: 530 SLLLQSAGVDNEFAFVQAVAGDSSSELLFTPHILTLNGEEAEINIGQNVPVRAGTTSTSS 589
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKAD 357
+ + GV+L P V + + L + +S V D PS+ K
Sbjct: 590 NNDFEQIEYRSTGVLLRVLPQVSADKYVTLDTEIVISSIVEQSPEEVLIDSPSFNENKVT 649
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T + + + TI+L G+++ + G+P L IP +G LF+++ E E+ I
Sbjct: 650 TKLLIKNNETILLGGIIQKVASESTSGVPFLKDIPGIGFLFQSATTGSREKELVIFIKAT 709
Query: 418 LV 419
++
Sbjct: 710 VI 711
>gi|148652211|ref|YP_001279304.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1]
gi|148571295|gb|ABQ93354.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1]
Length = 642
Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats.
Identities = 46/296 (15%), Positives = 103/296 (34%), Gaps = 43/296 (14%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ T + S+ ++ ++I QV ++V + + K++G + +
Sbjct: 349 ARTNTLIIKDTADSLSNIHALIKQIDIPVR-QVMIEVRMVSATDNFSKEMGVKWGLLSKG 407
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVL-------------------------------- 251
+ + +++ FS
Sbjct: 408 VAHNDDLLVGASDQTLADLKSFSAPNTAYKGRNKSRAGYAITRPDNLNVDLGISNPAGRI 467
Query: 252 -------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ L A++ ++ P + + Q+A+ +SG + Y++ S G
Sbjct: 468 AFGLLSMSDLMIDLELSAMQAEGRGEVISTPKILTLDKQTATVSSGTKIPYQSESEGGGT 527
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
T + + L TP++ +I L++ E P + + T V +
Sbjct: 528 T-TQFEEALLSLQVTPSITPEDKISLQLNIENGRPNPV--GNGVILIDTDRLITRVTVGD 584
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G T+VL G+ ++ I + +P +P +G LF+ ++ E+ I TP L++
Sbjct: 585 GQTLVLGGIYRNQIFNNTQKVPFFGDLPYIGRLFKQDLRRNDQQELLIFVTPKLMQ 640
>gi|58091874|gb|AAW65366.1| gene IV protein [synthetic construct]
Length = 437
Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats.
Identities = 49/238 (20%), Positives = 94/238 (39%), Gaps = 11/238 (4%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
DQV ++ + E + F + G + GG F G+
Sbjct: 204 ARDQVLIQSLMFETSLVNGVDLSFAAGSASGDKVAGGFNTSALGTALSTAGGSF---GIF 260
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGA 304
+ + A++ + + ++ P + SGQ+ + G + T +
Sbjct: 261 NGNVLALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTGEAANVNNPF 320
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
++ D GV L TP V+ G++ L I T+ + A D+ R TTV++
Sbjct: 321 QTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASDI-ITNQRHMQTTVQIKD 379
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
G T++L GL+ + +P +P++G LFR+ + E +F+ T ++K +
Sbjct: 380 GQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAHVIKAL 437
>gi|253995615|ref|YP_003047679.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis
JLW8]
gi|253982294|gb|ACT47152.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis
JLW8]
Length = 610
Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats.
Identities = 70/368 (19%), Positives = 136/368 (36%), Gaps = 45/368 (12%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
++ + L+ + A + +A + + ++ V T
Sbjct: 211 TALLAESDKEIIIGRLEADKQSASADNQSAKAGSVALGDTQKTEANNVKVDAQKAFTEYK 270
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
+ A + + + N ++V ++ + + + QV ++ TI EVR Q
Sbjct: 271 TLFAANVISNREAGVISVRGTNKQHERVQEFLDKVLASAKRQVLIEATIVEVRLSDSFQA 330
Query: 214 GFQHSITGSSSGPSK-----------SFAADFGGKFVSEGGDFSVKGVLDR--------- 253
G S +S+ S + G F + F V
Sbjct: 331 GIDWSRLNNSASNSGFQFRQQLGAQTNGINATGNTFTTTANAFGVATNAGFVAGYLNPVS 390
Query: 254 --FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---- 307
+ ++ LE+ + + L+ P L ++ Q+A +Y TV S SV
Sbjct: 391 KIGNIAASINLLEQFGSTKVLSSPKLMVLNNQTAVLKVVDNLVYFTVQSQQSQGSVGGGI 450
Query: 308 --------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-------EPVIGVNAGD-MPSY 351
T GVV+ TP + + + I+ VS +P + +P
Sbjct: 451 LSTVTTTPNTVPVGVVMSVTPQINDLSNVNINIRPTVSRVLGFKKDPNPNLTVESLVPEI 510
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+VR+ ++ +++ SG T VL GL++DD+ + +P LSK+P +G +F +TE+
Sbjct: 511 QVREMESMLQILSGNTAVLGGLMQDDVLTNTDKVPGLSKVPGVGKVFTGQNDANRKTELV 570
Query: 412 IAATPFLV 419
I P ++
Sbjct: 571 IFLRPTVI 578
>gi|302877484|ref|YP_003846048.1| type II and III secretion system protein [Gallionella
capsiferriformans ES-2]
gi|302580273|gb|ADL54284.1| type II and III secretion system protein [Gallionella
capsiferriformans ES-2]
Length = 573
Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats.
Identities = 59/354 (16%), Positives = 107/354 (30%), Gaps = 63/354 (17%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL------NIAGEDQVT 197
++L G + R +S + ++ N+ I+ E QV
Sbjct: 222 RLILGGKDASDGKGARLPADRSLSVSPMSGVIVIRALPDEIRNVTAFLKASQISVERQVI 281
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------------------ 239
L+ I +V+ + Q G + S G +
Sbjct: 282 LEAKIIDVQLNDSFQSGVNWGAFKNGLNSFSSVGVGGAGSVLNPATAGVGATDISSAALS 341
Query: 240 ----------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ G SF +L+ LE + L+ P ++ ++ Q A
Sbjct: 342 ALPGASLLPNAAGTGSLFGLAFQTSSFALLLNFLESQGDVHVLSSPRISTLNNQKAVLKV 401
Query: 290 GGQHLYKTVSSSTGATSV-----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
G + T S +V G+VL TP + I L + +S
Sbjct: 402 GTDEFFVTEISGGSQATVNVAGTAPTIKTQPFFSGIVLDVTPKIDENNEIILHVHPSISS 461
Query: 339 PVI---------GVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+P S + + D+ V G + + GL++ D + G+P
Sbjct: 462 VTTVNKVLNLGATTGTYTLPMASSSISETDSIVRARDGQIVAIGGLMRQDSTNGESGLPG 521
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDD 439
LSK ++F + + E+ I P +V D++R D
Sbjct: 522 LSK-----SIFGQTSKVSSKRELVILLKPTVVDSDRDWSDDIARSRDRVENLSR 570
>gi|58580480|ref|YP_199496.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84622438|ref|YP_449810.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|58425074|gb|AAW74111.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84366378|dbj|BAE67536.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 770
Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats.
Identities = 73/309 (23%), Positives = 116/309 (37%), Gaps = 37/309 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ET A SS + V+ L++ QV ++ +AEV Q G
Sbjct: 448 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGKLQYGVNWYF 506
Query: 220 TGSSSGPSKSFAADF-----------------GGKFVSEGGDFSVKGVLDRFSFETVLHA 262
S + + S A G G+ + + +++HA
Sbjct: 507 ENSVNAAADSAANSTGIGAGAGLASAAGRNIWGDIAGKITGEKGAQWTFLGKNAASIIHA 566
Query: 263 LERATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVVL 316
L+ T +R L P++ + A+ + + S + +SV D GV+L
Sbjct: 567 LDEVTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVIL 626
Query: 317 HFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSG 365
P V G + L I EVS P A R+ T + SG
Sbjct: 627 KVRPRVTKDGMVFLDIVQEVSSPGDRPAACTSATATVNAAACNVDINTRRVKTEAAVQSG 686
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
TI+LAGL+ D GIP LSK+P++GALF + N E+ + TP +V+ +
Sbjct: 687 DTIMLAGLIDDTTSDGSNGIPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVR--NPQ 744
Query: 426 DLSRPDDHY 434
+ D Y
Sbjct: 745 EARNLTDEY 753
>gi|17548695|ref|NP_522035.1| putative general secretion pathway GSPD-related protein [Ralstonia
solanacearum GMI1000]
gi|17430943|emb|CAD17625.1| putative general secretion pathway gspd-related protein [Ralstonia
solanacearum GMI1000]
Length = 698
Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats.
Identities = 76/423 (17%), Positives = 147/423 (34%), Gaps = 55/423 (13%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-- 79
+ +K P + A + + + + I+ L+K + + V + D
Sbjct: 118 AASKQPINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALD 174
Query: 80 ----------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
+ + T+ ++ + ++ L D L+
Sbjct: 175 LILSTTQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNADAKQTGAMLKA 229
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
+ + ++ ++ VV+ +S V L+E + RN +V+ + +
Sbjct: 230 MLKIRDPYIDERTNMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS 282
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
L Q+G Q+ + + + S + A+
Sbjct: 283 ------------------TKLTQLGVQYPNSFTLTPLSATGASSLTLSDFKGLNS----D 320
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATS 306
+ + VL+ LA P + A + + A G + T +S++ + S
Sbjct: 321 RIGVSTPNVVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSES 380
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELP 363
V D G+ L P++ + ++I EVS + + R A+T ++L
Sbjct: 381 VQYIDVGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRTANTVLKLH 440
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
G T +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP
Sbjct: 441 DGETQLLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSH 500
Query: 424 MRD 426
D
Sbjct: 501 RPD 503
>gi|312171108|emb|CBX79367.1| Type III secretion system outer membrane pore HrcC [Erwinia
amylovora ATCC BAA-2158]
Length = 677
Score = 149 bits (377), Expect = 8e-34, Method: Composition-based stats.
Identities = 70/452 (15%), Positives = 132/452 (29%), Gaps = 54/452 (11%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSD---PTKADVVVHSPRTMYLFGKNVGQANVI 100
G + + + + D + V+ + AD +H M + G A ++
Sbjct: 154 TGPPQYLELVKRFSEQREKKEDRRKVMTFPLRYASVADRTIHYRDQMVVI---PGVATML 210
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
N + +R + + + + +L + + S RA
Sbjct: 211 ----------NELMNGKRSAPASASGIESTPGGPDTNSMIQNTQTLLSRLSSHNKTSNRA 260
Query: 161 V-----------ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVRR 207
+S + + + + + L+ Q V + I ++ R
Sbjct: 261 GGRDNEIEDVSGRISADVRNNALLIRDDDKRHDEYSQLIAKIDVPQNLVEIDAVILDIDR 320
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
L ++ T S + G FVS D F + ALE
Sbjct: 321 TALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-----------DFKRFFADIQALEGEG 369
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-G 326
+A P++ + Q A + G L TP + G
Sbjct: 370 TASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADIQPVTAGTSLQVTPRAVGNEG 427
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+++ ++ + + N + R T + +VL G ++ I
Sbjct: 428 HSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALISENRALVLGGFHVEESADRDRRI 487
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
PLL IP LG LF + R + + TP L+ D+ DA
Sbjct: 488 PLLGDIPWLGQLFSSKRHEISQRQRLFILTPRLIGDQTDPTRYVTADNRQQLSDA----M 543
Query: 446 NRVNKIYGP------KEASEVEGQNYKGAIGF 471
RV + + E + + + GF
Sbjct: 544 GRVERRHSSVNQHDVVENALRDLAEGQSPAGF 575
>gi|88799604|ref|ZP_01115180.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
gi|88777689|gb|EAR08888.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
Length = 519
Score = 149 bits (377), Expect = 8e-34, Method: Composition-based stats.
Identities = 52/251 (20%), Positives = 97/251 (38%), Gaps = 26/251 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKFVSEGGDFSVKGV 250
QV ++ I EV D + G S + G + A D + G
Sbjct: 251 KQVIIEAKIVEVTLDQEYRSGINWSFFNDNFGSGNNSAGIGLDGNAISGAGGVGGVFNLS 310
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---- 306
L +F ++L L+ ++ L+ P ++ I+ Q A G + T+ S T +
Sbjct: 311 LSLDNFTSMLQLLDHQGDVQVLSSPRVSTINNQKAVIKVGTDEFFATIQSITTEVNDDDS 370
Query: 307 ----------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------ 350
+ G+ L TP + + L ++ V+E V D+
Sbjct: 371 DSVTTVPAFELEQFFSGIALDVTPQIADDDSVTLHVRPTVTEVVEDTKTLDVGGRSYQLP 430
Query: 351 ---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+R++D+ + SG +V+ GLL+ G+P IP++ LF R ++++
Sbjct: 431 LAYSNIRESDSIIRAQSGQIVVIGGLLQQKQDLGTTGLPWFQTIPVIRGLFAQDRESQQK 490
Query: 408 TEIFIAATPFL 418
+E+ I P +
Sbjct: 491 SELVILLKPTV 501
>gi|188578583|ref|YP_001915512.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188523035|gb|ACD60980.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 766
Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats.
Identities = 73/309 (23%), Positives = 116/309 (37%), Gaps = 37/309 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
++ET A SS + V+ L++ QV ++ +AEV Q G
Sbjct: 444 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGKLQYGVNWYF 502
Query: 220 TGSSSGPSKSFAADF-----------------GGKFVSEGGDFSVKGVLDRFSFETVLHA 262
S + + S A G G+ + + +++HA
Sbjct: 503 ENSVNAAADSAANSTGIGAGAGLASAAGRNIWGDIAGKITGEKGAQWTFLGKNAASIIHA 562
Query: 263 LERATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVVL 316
L+ T +R L P++ + A+ + + S + +SV D GV+L
Sbjct: 563 LDEVTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVIL 622
Query: 317 HFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSG 365
P V G + L I EVS P A R+ T + SG
Sbjct: 623 KVRPRVTKDGMVFLDIVQEVSSPGDRPAACTSATATVNAAACNVDINTRRVKTEAAVQSG 682
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
TI+LAGL+ D GIP LSK+P++GALF + N E+ + TP +V+ +
Sbjct: 683 DTIMLAGLIDDTTSDGSNGIPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVR--NPQ 740
Query: 426 DLSRPDDHY 434
+ D Y
Sbjct: 741 EARNLTDEY 749
>gi|90424504|ref|YP_532874.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB18]
gi|90106518|gb|ABD88555.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB18]
Length = 774
Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats.
Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 26/252 (10%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVL 251
QV + TIAEV Q G Q +T G S +S D + +
Sbjct: 489 QVAIDATIAEVTLTDDLQFGVQTYLTSRDFGMPADRGSLGTASSSALISAASDVVLNRAI 548
Query: 252 DRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---- 299
F+F + +L+AL T ++ L+ P+L I Q A+ G + +T S
Sbjct: 549 PGFNFLVGSGSSPKAILNALHAITEVKVLSNPSLVVIDNQVATLQVGDEIPIQTGSATVL 608
Query: 300 --SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348
S+T A + G++L P + + G + L I+ E+S PV +
Sbjct: 609 SSSNTIANTTDYRRTGILLQVVPRINANGNVRLEIEQEISNPVASSSTSSSSSTSTNSLT 668
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P+ RK ++V + SG T++LAGL+ D + + GIP L ++P +G +F + + T
Sbjct: 669 PTVSTRKVKSSVAVASGQTVLLAGLISDTQNKTRSGIPGLDQLPGVGDVFSQTEKIMKRT 728
Query: 409 EIFIAATPFLVK 420
E+ I P +++
Sbjct: 729 ELIIFIRPQIIR 740
>gi|91762809|ref|ZP_01264774.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002]
gi|91718611|gb|EAS85261.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002]
Length = 518
Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/291 (16%), Positives = 94/291 (32%), Gaps = 38/291 (13%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ E + T + KV+ ++ + QV ++ I E + +G +
Sbjct: 236 QVTEEATTRSIIVRGKEKDLDIVDKVIREIDKRTK-QVLIEAFIVEATSTFEQSLGKRLG 294
Query: 219 I--------TGSSSGPSKSFAADFGGKFVS----------------------EGGDFSVK 248
G + G S AA G +S +
Sbjct: 295 AAYTRKSLRMGGTQGGSSVGAASGTGAALSDSTGAFTSGAGTDNLVNFGSAAATSGIGIL 354
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
+ L LE +T++ P L + Q AS G
Sbjct: 355 KKTGSAVLKLELDFLEAQGLSKTVSNPKLFTLDNQQASINQGETIYIDGGEGED-----K 409
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
D + L TP ++ G + L +V+ + +T + + G +
Sbjct: 410 PVDASLKLIVTPNIIGDGNVML--SIQVNNDTPNRANAASVGVNKMEINTKLLVADGDIV 467
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V+ G+ K+++ ++G+P SK+PILG + + E+ + P ++
Sbjct: 468 VIGGIKKNNVANNRQGVPGTSKVPILGKVLSGKSNSDTMNELLVFIAPRIL 518
>gi|15606033|ref|NP_213410.1| hypothetical protein aq_585 [Aquifex aeolicus VF5]
gi|2983222|gb|AAC06820.1| hypothetical protein aq_585 [Aquifex aeolicus VF5]
Length = 705
Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats.
Identities = 52/238 (21%), Positives = 98/238 (41%), Gaps = 14/238 (5%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
+ ++ + EV + +L+++G S A + G +
Sbjct: 465 IKIRAKLVEVEKSLLRELGISWRTVFSKAYIPEFWQGETAFRTVTPGQPQSGLLTFTFQR 524
Query: 252 DRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+R + E L A E+ + +AE + ++G+ A +SG + VS S G +V
Sbjct: 525 NRLNLLEFKLLAYEQEGRAKNVAESYVITVNGEPAVISSGLEFPVTEVSLSGGIANVEPK 584
Query: 311 D--YGVVLHFTPTVLSPGRIGLRIQT------EVSEPVIGVN-AGDMPSYRVRKADTTVE 361
+VL TP VL G I L + V E + +P + + D +
Sbjct: 585 YESIPIVLITTPVVLPDGNILLSVYLARRQINSVQEFPVTQTLTQKIPVFSTSRIDVKIP 644
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ +G T+V+ G ++ + G+P L ++P+LG LF+ + E+ I TP ++
Sbjct: 645 IKNGETVVIGGAVEKSDSITESGVPKLREVPLLGWLFKTQTKQLRDRELLIFITPEII 702
>gi|171060101|ref|YP_001792450.1| general secretion pathway protein D [Leptothrix cholodnii SP-6]
gi|170777546|gb|ACB35685.1| general secretion pathway protein D [Leptothrix cholodnii SP-6]
Length = 753
Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats.
Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 31/281 (11%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------TGSSS 224
V++ L+ QV ++ I ++ + GFQ TG ++
Sbjct: 398 GVIDQLDAR-RAQVYVESMIVKMDATQAAEFGFQWQGLLGQSGDRYGLVAGTNFGTGGNN 456
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ S A G G + + ++ ++ + LE T L+ P L A+ +
Sbjct: 457 IVNLSVGAATGAALPGAGLNVGLLKAINGVYTLGALARFLESNTGANVLSTPNLIALDNE 516
Query: 284 SASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
A G + T S + T ++ D G+ L P + G + + I
Sbjct: 517 EAKIVIGQNVPFVTGSFTNTGTSNGSANPFQTIERKDVGLTLRVKPQIGEGGTVRMVIYQ 576
Query: 335 EVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
E S V P+ +TTV + G +VL GLLKDD ++ +P L+ IP+
Sbjct: 577 ENSSVVANTTTNSAGPTTDKSAIETTVVVDDGSIMVLGGLLKDDYGSGEDRVPGLASIPL 636
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
+G LFR+ R ++ + + P +++ + D Y
Sbjct: 637 IGGLFRSENRKRTKSNLLVFLRPVVMR-SQQDANALTLDRY 676
>gi|193062144|ref|ZP_03043240.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli E22]
gi|194426396|ref|ZP_03058951.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli B171]
gi|260845704|ref|YP_003223482.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009]
gi|260858255|ref|YP_003232146.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368]
gi|13447709|gb|AAK26708.1|AF200363_16 EscC [Escherichia coli]
gi|18034513|gb|AAL57535.1|AF453441_19 EscC [Escherichia coli]
gi|17384643|emb|CAC81855.1| EscC protein [Escherichia coli]
gi|57434464|emb|CAI43881.1| EscC protein [Escherichia coli]
gi|192932364|gb|EDV84962.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli E22]
gi|194415704|gb|EDX31971.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli B171]
gi|195183205|dbj|BAG66750.1| T3SS structure protein EscC [Escherichia coli O111:H-]
gi|254692333|emb|CAR47974.1| EscC protein [Escherichia coli]
gi|254692401|emb|CAR48044.1| EscC protein [Escherichia coli]
gi|257756904|dbj|BAI28406.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368]
gi|257760851|dbj|BAI32348.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009]
gi|323163017|gb|EFZ48850.1| hypothetical protein ECE128010_0613 [Escherichia coli E128010]
Length = 512
Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 99/247 (40%), Gaps = 23/247 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ + V+I +V + L+Q+G S T ++ S +F + + + S + +
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSS------TAQANLSSSVISNA 327
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+F ++AL++ + + L++P++ ++ A K S S+ + G
Sbjct: 328 NNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385
Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
+L TP +L L ++ + +P + + T
Sbjct: 386 TLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSILPEVQNSEMTT 445
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G +++L G ++D K+GIPLLS IP++G LF ++ +
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKHSVVRLFLIKATP 505
Query: 419 VKPVAMR 425
+K +
Sbjct: 506 IKSASSE 512
>gi|83647801|ref|YP_436236.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC
2396]
gi|83635844|gb|ABC31811.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC
2396]
Length = 615
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 53/291 (18%), Positives = 96/291 (32%), Gaps = 26/291 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+QV + V+I V LK++G G D ++ + G
Sbjct: 285 SEQVEVNVSIISVSATNLKELGVSWQARDQKLGEFGYGGIDKQNPAPNKNQLAILGGADA 344
Query: 253 RFS---------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
FS F ++AL + ++ P++ A +
Sbjct: 345 TFSTVLDSGLDYFIAKVNALVEDGDAQVVSRPSVVTSEHLEAVLDDSTTFHVRV--QGNE 402
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ G VL TP + I L + E G +P + +T
Sbjct: 403 QVDLFPVTVGSVLRVTPHIQRGEEQKGINLEVTIE-DGQQTGEEVDRIPVIKTSSINTQT 461
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G ++++ G +D + G+PLL IP+LGALFR + NR++ TP ++
Sbjct: 462 VVGLGQSLLIGGFFQDYESESVGGVPLLKDIPLLGALFRTTNHNRKKMVKLFLMTPKIID 521
Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
P + + ++ + V + Y + GF
Sbjct: 522 --------VPTGGLA---SNGRKIYGYAFQVGSSNKDGAVAIREYFDSRGF 561
>gi|71082769|ref|YP_265488.1| type II secretion PilQ [Candidatus Pelagibacter ubique HTCC1062]
gi|71061882|gb|AAZ20885.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1062]
Length = 518
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/291 (16%), Positives = 94/291 (32%), Gaps = 38/291 (13%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ E + T + KV+ ++ + QV ++ I E + +G +
Sbjct: 236 QVTEEATTRSIIVRGKEKDLDIVDKVIREIDKRTK-QVLIEAFIVEATSTFEQSLGKRLG 294
Query: 219 I--------TGSSSGPSKSFAADFGGKFVS----------------------EGGDFSVK 248
G + G S AA G +S +
Sbjct: 295 AAYTRKSLRMGGTQGGSSVGAASGSGAALSDSTGAFTSGAGTDNLVNFGSAAATSGIGIL 354
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
+ L LE +T++ P L + Q AS G
Sbjct: 355 KKTGSAVLKLELDFLEAQGLSKTVSNPKLFTLDNQQASINQGETIYIDGGEGED-----K 409
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
D + L TP ++ G + L +V+ + +T + + G +
Sbjct: 410 PVDASLKLIVTPNIIGDGNVML--SIQVNNDTPNRANAASVGVNKMEINTKLLVADGDIV 467
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V+ G+ K+++ ++G+P SK+PILG + + E+ + P ++
Sbjct: 468 VIGGIKKNNVANNRQGVPGTSKVPILGKVLSGKSNSDTMNELLVFIAPRIL 518
>gi|312958833|ref|ZP_07773352.1| type III secretion system rscC [Pseudomonas fluorescens WH6]
gi|311286603|gb|EFQ65165.1| type III secretion system rscC [Pseudomonas fluorescens WH6]
Length = 713
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/307 (16%), Positives = 92/307 (29%), Gaps = 23/307 (7%)
Query: 139 EMVSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
V GM T + R + +++++ L++A +
Sbjct: 272 TNAGTAPVDTGMAITPRAQVNTSRIRVEADVRNNAVLIYDVPERQAMYRELISQLDVARK 331
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
V + I ++ R L + G + S + A + + R
Sbjct: 332 L-VEIDAIILDIERTQLHEFGIKWGFQNSRFRGGVNMAPGTSSQL----------SIEHR 380
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
F + ALE ++ P++ + Q A + +T G
Sbjct: 381 DRFYADVRALESRGLATMVSNPSVLTLENQPAVIDFNRTQYLTAGRENATILPIT---VG 437
Query: 314 VVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
P V+ +I L + E P R K T + ++V+
Sbjct: 438 TSFQVVPRVITSRGGHQIHLAVDIEDGNFDESNPDRLGPDVRRGKVSTQAVMAEKRSLVV 497
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
G + + +PLL IP+LG ALF ++ E TP ++ +
Sbjct: 498 GGFHVTESSDKQRKVPLLGDIPLLGKALFSSTERQNNRRERLFILTPRVIGDQSDPSRYL 557
Query: 430 PDDHYSV 436
P D
Sbjct: 558 PADDQVE 564
>gi|110835094|ref|YP_693953.1| fimbrial assembly protein pilQ [Alcanivorax borkumensis SK2]
gi|110648205|emb|CAL17681.1| Fimbrial assembly protein pilQ precursor [Alcanivorax borkumensis
SK2]
Length = 723
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 5/202 (2%)
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ D G S L E L ALE +A P +
Sbjct: 521 FQFQEAENDDDLIVDLGVDSASASRFAVGFTSLASGLIELELSALEAEGHGELVATPKVL 580
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
Q A + GQ + +++S+GATS+ + + L TP + G I + ++
Sbjct: 581 TADQQPA-VIASGQQVPFEIATSSGATSIDFVEAELRLEVTPHITPDGNIIMMLKVNNDS 639
Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
++ + + +T+V + G T+VL G+ + + P L +P +GALF
Sbjct: 640 F----SSDGSAAINTNRVETSVLVNDGETVVLGGIFQQEKINSVTKTPFLGDLPWIGALF 695
Query: 399 RNSRFNREETEIFIAATPFLVK 420
R + + E+ I TP L+K
Sbjct: 696 RKTVNRDNKQELLIFITPRLMK 717
>gi|293603728|ref|ZP_06686147.1| type II secretion system protein D [Achromobacter piechaudii ATCC
43553]
gi|292817902|gb|EFF76964.1| type II secretion system protein D [Achromobacter piechaudii ATCC
43553]
Length = 611
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 81/456 (17%), Positives = 159/456 (34%), Gaps = 50/456 (10%)
Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV-QDVLVSDPTK----- 76
+ P A I I + L+ + +P + ++
Sbjct: 176 ALRKPVSLNFKAQPIVQILDTISLAAGVDFVLDPDVQTSMPASIMARQTTAEDAINLLLR 235
Query: 77 ---ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD-ILIERDIAHLEMTLRRFIA 132
+ V T+ ++ + + ++++ L D H+ LR+ A
Sbjct: 236 TNQLEKKVLDAHTLLIYPSRPDK------DKEYRELMVRVFYLNHADATHVLAALRQISA 289
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
N+ ++ ++ V++ + ++V+ L+IA
Sbjct: 290 PKNVHLDERANAVLVRDT------------------------PEVMAVVERVVAALDIAQ 325
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ VT+ V + EV + ++G + S + + G + GV
Sbjct: 326 SE-VTMDVQVLEVNANDELEVGVDYPSDLRFSVLPQGENGRITVGDL-LGLNQGKIGVTS 383
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTH 310
R L+ L++ + LA P + + + AS G + T +++ G SV
Sbjct: 384 RNDLSAALNLLQKRGKTKVLANPKIRVRNMEKASIKIGEKVPVVTTTNANGVVTESVNYQ 443
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGT 367
D G++L P + + +++ EVS V G + R A+T + G T
Sbjct: 444 DVGLILQVEPRISLSNEVSVKVSMEVSNLKGEVKTAGGGVVYPMSTRNAETVMTARDGET 503
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
VLAGL+ + G+P LS + LG+LF + + TEI + TP + + +A L
Sbjct: 504 QVLAGLVNQQQTRSSSGVPGLSVMGWLGSLFGGQKKTDQNTEIVLLLTPHIERSMA---L 560
Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
D Y + + P +E +
Sbjct: 561 PSAADSYFPSGTESRVTVSPMTTQAPPAATTEADIP 596
>gi|323143301|ref|ZP_08077992.1| type III secretion outer membrane pore, YscC/HrcC family
[Succinatimonas hippei YIT 12066]
gi|322416918|gb|EFY07561.1| type III secretion outer membrane pore, YscC/HrcC family
[Succinatimonas hippei YIT 12066]
Length = 610
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/260 (18%), Positives = 95/260 (36%), Gaps = 24/260 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-----TGSSSGPSKSFAADFGG 236
+ V+ L++ V L I +V +G +G ++ G
Sbjct: 297 EDVIKELDVPVRL-VELHAAIVDVDVGAADSLGIDWQAARRTGNWQIAGGVGHQISNSGS 355
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ GG FS D+ +F ++ LE RTL P++ + A+ + K
Sbjct: 356 LNPNGGGIFSTVFSTDQSAFMMQVNMLEEDNKARTLGRPSVLTLDNVEATLEDTTTNYVK 415
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---------IGLRIQTEVSEPVIGVNAGD 347
++ + G +L TP ++ I L+ + + + D
Sbjct: 416 VA--GNESSDLFEVVSGTILRVTPHIIDSHDGSAPYIQMVISLQTNQDTDQSQSYTVSSD 473
Query: 348 -------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+P + +T + G +++L G ++ + GIP+L IP++G LF +
Sbjct: 474 AQGADERIPVIKKTTINTQALVQQGQSLLLGGYYMENHRNSDNGIPVLKDIPLIGGLFGS 533
Query: 401 SRFNREETEIFIAATPFLVK 420
S + E + TP ++
Sbjct: 534 SSDEATQRERLLLITPRILD 553
>gi|294056469|ref|YP_003550127.1| type II and III secretion system protein [Coraliomargarita
akajimensis DSM 45221]
gi|293615802|gb|ADE55957.1| type II and III secretion system protein [Coraliomargarita
akajimensis DSM 45221]
Length = 452
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/282 (23%), Positives = 111/282 (39%), Gaps = 26/282 (9%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
GMV +S + + + K ++ L+ Q+ ++ I E+
Sbjct: 102 GMVAASVESDQII---------VSDRSSNIALLKSIIQRLDKPVP-QILVEARIVELNIS 151
Query: 209 ILKQIGFQHSITGSSSGPSKSFAA---------DFGGKFVSEGGDFSVKGV---LDRFSF 256
+ ++ P A + GG + G + SF
Sbjct: 152 SDLEREVDLYYQNIATDPLTGQLAIVDEIGSKLNVGGATPNTGQGGILNSQVWDNGGESF 211
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YKTVSSSTGATSVTTHDYGV 314
+ LE + + L+ P L G+ S +G + +T SS TS G+
Sbjct: 212 NAFVRYLESSGKAKILSAPNLIIQRGKEGSIVTGEEVPILSQTTSSGGVTTSTEFKSVGI 271
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
L PT+++ R+ L + EVS + I P VR+A T +E+ G I +AG
Sbjct: 272 KLSVKPTMIAGTRVRLEVNPEVSTVIDYIEAGGVSNPIIAVRQARTELEVNDGQLISMAG 331
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
LL+ + + P+LS+IPILGALF++ R +T++ I
Sbjct: 332 LLQSTERDTERRTPILSQIPILGALFKSDREQSSQTQLIIFL 373
>gi|226326440|ref|ZP_03801958.1| hypothetical protein PROPEN_00288 [Proteus penneri ATCC 35198]
gi|225205223|gb|EEG87577.1| hypothetical protein PROPEN_00288 [Proteus penneri ATCC 35198]
Length = 601
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 39/237 (16%), Positives = 78/237 (32%), Gaps = 21/237 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV L + I ++ ++ +G SS S F
Sbjct: 120 KRQVELSLWIIDISKNKADSLGIDWQAGYSSGNHSFFFNTSSLSAA-------------S 166
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+F + AL + ++ P L A F + + ++ + +
Sbjct: 167 GLNFLGKIRALTEDGDAKMVSRPILLTQENTPAIFDNNTTFYTQI--KGERVATLESTTF 224
Query: 313 GVVLHFTPTVLSPGR-----IGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGG 366
G ++ P + + + I L E + +P T + GG
Sbjct: 225 GTMMSVLPRIGNSNKEIEMIINLEDGAEKKDDKAKDETVESLPVINRTNISTVARVSEGG 284
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
++++ G ++D + IP+LS IP++G LF N ++ P L+
Sbjct: 285 SLLIGGYTREDNINAETKIPVLSSIPLIGGLFSYKSDNNKKMVRIFMLQPRLLDNTE 341
>gi|292487037|ref|YP_003529907.1| type III secretion system outer membrane pore HrcC [Erwinia
amylovora CFBP1430]
gi|292900578|ref|YP_003539947.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|1336093|gb|AAB49179.1| HrcC [Erwinia amylovora]
gi|291200426|emb|CBJ47554.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552454|emb|CBA19499.1| Type III secretion system outer membrane pore HrcC [Erwinia
amylovora CFBP1430]
Length = 676
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 72/481 (14%), Positives = 138/481 (28%), Gaps = 58/481 (12%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73
L + + + V+ + G + + + + D + V+
Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELVKRFSEQREKKEDRRKVMTFPL 183
Query: 74 --PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
+ AD +H + G A ++ N + +R +
Sbjct: 184 RYASVADRTIHYRDQTVVI---PGVATML----------NELMNGKRAAPASASGIDSTP 230
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAV-----------ELSETFLSQSGRNQYANSS 180
+ M + +L + + S RA +S + + + +
Sbjct: 231 GGPDTNSMMQNTQTLLSRLSSRNKTSNRAGGRDNEIEDVSGRISADVRNNALLIRDDDKR 290
Query: 181 SKKVMNLLNIAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ L+ Q V + I ++ R L ++ T S + G F
Sbjct: 291 HDEYSQLIAKIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLF 350
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
VS D F + ALE +A P++ + Q A
Sbjct: 351 VS-----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT 399
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KA 356
+ G L TP + G +++ ++ + + N + R
Sbjct: 400 --GERVADIQPVTAGTSLQVTPRAVGNEGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTV 457
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T + +VL G ++ IPLL IP LG LF + R + + TP
Sbjct: 458 STQALISENRALVLGGFHVEESADRDRRIPLLGDIPWLGQLFSSKRHEISQRQRLFILTP 517
Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIG 470
L+ D+ DA RV + + E + + + G
Sbjct: 518 RLIGDQTDPTRYVTADNRQQLSDA----MGRVERRHSSVNQHDVVENALRDLAEGQSPAG 573
Query: 471 F 471
F
Sbjct: 574 F 574
>gi|257092259|ref|YP_003165900.1| type II and III secretion system protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257044783|gb|ACV33971.1| type II and III secretion system protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 624
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 54/353 (15%), Positives = 118/353 (33%), Gaps = 41/353 (11%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVR 206
V + A + + + +KV ++ + + QV ++ TI EV
Sbjct: 274 TVVKRMTYREAASVIANPEGGVITVRATSRQHEKVQEFLDRVMSSARRQVLIEATIVEVT 333
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
Q G Q + S + S + + ++ S + L
Sbjct: 334 LSDGYQQGIQWNRLTSGTEYSVTKPTLTTNVQNAVTPYVIKYSNINPASLLATVELLRLF 393
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------------------GAT 305
++ L+ P L ++ Q+A+ +Y +V T
Sbjct: 394 GTVKVLSSPKLAVLNNQTATLRVSEDFVYFSVKQDAASAVGVVVGGAAAASGPVSNPTTT 453
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---------------VIGVNAGDMPS 350
+ + G + T + G + L ++ +S +P
Sbjct: 454 TPQSVSIGFFMSLTAQISDSGTVTLNVRPSISFIADLKQDPNPGLVNPKTGNTIPNLVPQ 513
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
R R+ ++ + + SG VL GL++D I +P L IP +G +F N + ++E+
Sbjct: 514 IRTREIESMLRVESGDIAVLGGLMEDRIGNTVGRLPGLGDIPFVGEVFNNRGNSSSKSEL 573
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
+ P +++ ++ + + D F ++V + + + + Q
Sbjct: 574 VVLLRPTVIRDASIDGDFSSFREFLPKKD--FFRTDQVYRPFSLPDQTPEPLQ 624
>gi|162454464|ref|YP_001616831.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So
ce 56']
gi|161165046|emb|CAN96351.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So
ce 56']
Length = 774
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/296 (17%), Positives = 106/296 (35%), Gaps = 44/296 (14%)
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
T + + + ++++ L+ QV ++ + E ++ IG Q G+ S
Sbjct: 474 RTNVLIARDVAGNLNQIEELVRSLDTQTP-QVLIEARVVEATSRYVRDIGIQWGGDGTFS 532
Query: 225 GPSKSFAA----------------------------------------DFGGKFVSEGGD 244
+ + G
Sbjct: 533 AATGNPTGLVFPSAIGIAGGATDSNSPTGGLSPFSSQVSNPNFAVNLPAIVGAGQGGALG 592
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
F++ + + + L A E + +R ++ P + + + A + G + +S+
Sbjct: 593 FTLGSINNTVNLGVRLSAAEASGMLRVVSSPRILTLDNREARISQGTLIPFSQISAQGVQ 652
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELP 363
T T + + L P V S G + + ++ EP +A P+ R+A+T + +
Sbjct: 653 T--TFQEAKLQLLVKPHVTSDGSVAMHVKINRDEPDFNQTSARGDPTILKREAETDLLIM 710
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G T V+ G+ + + + +P IP+LG LF+ R + E+ I TP +V
Sbjct: 711 DGHTAVIGGIFTRNTGRNLDQVPFFGDIPVLGLLFQRRRASDTRNELVIFLTPRIV 766
>gi|237653194|ref|YP_002889508.1| general secretion pathway protein D [Thauera sp. MZ1T]
gi|237624441|gb|ACR01131.1| general secretion pathway protein D [Thauera sp. MZ1T]
Length = 728
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 59/358 (16%), Positives = 116/358 (32%), Gaps = 45/358 (12%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G + + + + + V++ L+ QV ++ IAE+
Sbjct: 362 AGGLSSATRGGMVQPDAVNNALIITAPDAVYRNLRAVIDQLD-RRRAQVYIEALIAEIST 420
Query: 208 DILKQIGFQH-------------------------SITGSSSGPSKSFAADFGGKFVSEG 242
+ + GFQ + S+ ++ + G V G
Sbjct: 421 ERAAEFGFQWVAGASAGEVGVLGAQLFNSGGGNLGQLIAGSADRTRLTLPNNGLNLVVGG 480
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
G +V G+ + S + LE + L+ P L + + A G + T +
Sbjct: 481 GKVNVPGIGEVLSLGVLARFLENEVSANILSTPNLITLDNEEARIVVGRNLPFVTGQYAN 540
Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSY 351
++ D G+ LH P + G I L+I E S V +
Sbjct: 541 TGGGTTPANPFQTIERRDVGLTLHVKPQISEGGAIRLQIYQEASAVVGSAESAAAGNSVT 600
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R ++ V + G + L GL++D +E +P+L +P G+LFR R +T +
Sbjct: 601 TKRSIESMVLVDDGAILALGGLVEDSYSGGEEKVPVLGDLPFAGSLFRYDTRKRAKTNLV 660
Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
+ P +++ + D + R +++ +
Sbjct: 661 VFLRPVILR--DRESYAALTDSRYD------YVIGRRDQLPSGANLLRDPPPGEPAPV 710
>gi|242310207|ref|ZP_04809362.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239523504|gb|EEQ63370.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 502
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 34/295 (11%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------- 219
L ++ + + L+ + QV + V I + G
Sbjct: 198 LVSVRGDKEGLERVEAYIQKLHQRLQQQVLIDVHILSITHTHSDTTGINWDGLYNIQNIM 257
Query: 220 -----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIR 270
G+S G G V + G +++ ++ S ++ L+ +
Sbjct: 258 IPTFSEGASFGGGGEVGNVSGINIVGQNGSNALQYGINIFSQGLSLNRIIEFLKTYGKVE 317
Query: 271 TLAEPTLTAISGQSASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+++ P + ++ Q A + G Q+ + + + GV+L TP
Sbjct: 318 SISNPKVLTLNNQPAMISVGDILRYQKSSIYQNTNAQTTLTNTDNEYPSIFAGVLLDITP 377
Query: 321 TVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
+ I L+I +++ P+ + + V + + IVL GL+
Sbjct: 378 VIFGD-EIMLKINPSITKTKENRTEIPATAFESPPNLTTNQLSSIVSVKNNQKIVLGGLI 436
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
+I ++ IP+L IP++ LF S+ EI P ++ +LS
Sbjct: 437 SKNISSIENKIPVLGSIPLIKPLFSYSQDIERTEEIVFIIEPKIISQEIQENLSL 491
>gi|171462916|ref|YP_001797029.1| type II and III secretion system protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171192454|gb|ACB43415.1| type II and III secretion system protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 209
Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 82/206 (39%), Gaps = 4/206 (1%)
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
S T + F ++ + L ALE + L+
Sbjct: 6 TMMSYTWQKLVGNLDLGGPGLSSFNPATVAATLVSRNASRILQAELSALESEGQGKILSN 65
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
P + A+ G + Y+T + + + + + L P + G+I +
Sbjct: 66 PRIMTGDQVKATIELGTELPYQTSNQNG--SKLQFRKANLRLEALPKIHPDGKISML--V 121
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
+++ +G+ + + + V + +GGT ++ G+L+ ++ + IPLL IP++
Sbjct: 122 GINKDTVGMKTEQGYAIDTKSLSSEVTVENGGTAIIGGILQTTEREDEVKIPLLGDIPLI 181
Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
G FR+ +++TE+ + TP ++
Sbjct: 182 GHFFRHKSKLQDKTELLVFLTPTVLD 207
>gi|254428336|ref|ZP_05042043.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp.
DG881]
gi|196194505|gb|EDX89464.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp.
DG881]
Length = 693
Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 5/195 (2%)
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
D G + L E L ALE +A P + Q A
Sbjct: 498 NDDDLIVDLGVDSANASRFAVGFTSLASGLIELELSALEAEGHGELVATPKVLTADQQPA 557
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
+ GQ + V++S+GATS+ + + L TP + G I + ++ ++
Sbjct: 558 -VIASGQQVPFEVATSSGATSIDFVEAELRLEVTPHITPDGNIIMTLKVNNDSF----SS 612
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+ + +T+V + G T+VL G+ + + P L +P +G LFR +
Sbjct: 613 DGSAAINTNRVETSVLVNDGETVVLGGIFQQEKINSVTKTPFLGDLPWIGNLFRKTVNRD 672
Query: 406 EETEIFIAATPFLVK 420
+ E+ I TP L+K
Sbjct: 673 NKQELLIFITPRLMK 687
Score = 38.2 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 54/169 (31%), Gaps = 3/169 (1%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ VG ++ + L++ ++ I L ++I + + + G
Sbjct: 308 RQVGNVLLVAPADEIAAREQLELESQKKIEALAPLRTQYININYANASELKGLIANAGGK 367
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDI 209
S R + + + + ++++ L++ QV ++ + D+
Sbjct: 368 GEALVSSRGSVVVDQRTNTLIVQDTQAKLEEIRELIDQLDVP-VQQVLIEARVVVATNDV 426
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
+ G + G ++ +G + + +D +F
Sbjct: 427 TDEFGVRWGGLGFNAESMLQDQRTYGVSGRLQSLRNLHQTNIDGAAFAA 475
>gi|301166568|emb|CBW26144.1| putative general secretion pathway protein D [Bacteriovorax marinus
SJ]
Length = 765
Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats.
Identities = 67/381 (17%), Positives = 121/381 (31%), Gaps = 59/381 (15%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS---NIRVEMVSDTV------VLHG 149
+I + + + + L L + +S I V ++ L
Sbjct: 284 LIAEPRTNSIIAMTNAEGAKQLNALIKKLDVKLVNSSSGQIHVYYLNHGTSETLAKTLSS 343
Query: 150 MVRTIQDSQ----RAVELSETFLSQSGRNQYANSSSKKVMNLLNI--------------- 190
+V + Q R ++ S S N ++ K N + +
Sbjct: 344 LVTSAQPKTSTRSRLSRVASNDDSTSLFNAEVKITADKENNAIVVTASPTDYLTIKEVIK 403
Query: 191 ---AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
DQV ++ I E K G S K+ G + +
Sbjct: 404 KLDRPRDQVFVEGMIMETSVTKDKGFGINIIGAYGSGATDKAGFVGNGTDLFNVMSNNIT 463
Query: 248 KGVLDRF--------------------SFETVLHALERATAIRTLAEPTLTAISGQSASF 287
S ++ A+ LA P + A+ + A F
Sbjct: 464 ALGGLFVGGGTGSSVTQTVSGQEVKIKSVSGLITAIASNAGTNVLATPQIMALDNEEAVF 523
Query: 288 TSGGQHLYK---TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGV 343
G ++ + + S+ + L TP V R I L+I ++ +
Sbjct: 524 EVGESIPTPERTNAANGSSSVSIKQQKVAMTLKITPQVNKVTRFIKLKIDQKIDDFSSRS 583
Query: 344 NAGDMPS----YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+ S R A T+V + TI + GL++D + +PLL IP+LG LF+
Sbjct: 584 LPSGVQSDGVATTTRSAVTSVVVRDRDTIAMGGLMRDKETDVTSKVPLLGDIPVLGWLFK 643
Query: 400 NSRFNREETEIFIAATPFLVK 420
N+R + E+ + TP ++
Sbjct: 644 NTRKSVEKLNLLFFLTPKIID 664
>gi|42524677|ref|NP_970057.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100]
gi|39576887|emb|CAE78116.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100]
Length = 433
Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats.
Identities = 78/414 (18%), Positives = 141/414 (34%), Gaps = 39/414 (9%)
Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
+ +GL + + + V + D R + L G+ G V +
Sbjct: 17 SQTALVLGLGEQKTVPLQGQ-DRVWIQDREILTAEGQGGR-LLLVGRREGFTTVKV---- 70
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G + ++ +L + + + +++ G + +QD +
Sbjct: 71 GAVLYSVQVLHPSKKDSFQDLTTYLKTRVGLHASLKEGDLLIEGQLYRLQDWIHLADHMR 130
Query: 166 T-----FLSQSGRNQYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVRRDILKQ------- 212
T + + + NL A Q + EVR Q
Sbjct: 131 TKNLNYQMRARMTASLQQLAQEHFSNLFYKAHLPPQTLIFEPALEVRVSGTDQTFRKYSR 190
Query: 213 ----IGFQHSITGSSSGPSKSFAADFGG--------------KFVSEGGDFSVKGVLDRF 254
G +S + + GV +R
Sbjct: 191 LLMPFGVSLLKDETSLDIAPTIKVQITVAEIKKDFSLKYGLRPPAGYSAKLMPDGVWERD 250
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
L ALE + LA P + SG+ A F +GG+ K ++ + YG+
Sbjct: 251 ELPFNLTALEAQGQGKILASPNILCRSGKEAEFLAGGEFPIKIMNY--KMQDIVWKRYGI 308
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
+L P + GR+ + I+TEVS D+P + + +L TI L+GLL
Sbjct: 309 LLRVKPKADAAGRMSISIETEVSTVDDSRKVDDVPGILTNRVSSHFDLTRPQTIALSGLL 368
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
K + + EG+PLLS++P++GALF + F +E+ I P +++ +
Sbjct: 369 KSEDGKSSEGLPLLSRLPVVGALFASKDFKENRSELVIFVRPSILREGEENPMP 422
>gi|319956469|ref|YP_004167732.1| pilus (msha type) biogenesis protein mshl [Nitratifractor
salsuginis DSM 16511]
gi|319418873|gb|ADV45983.1| pilus (MSHA type) biogenesis protein MshL [Nitratifractor
salsuginis DSM 16511]
Length = 511
Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats.
Identities = 58/379 (15%), Positives = 126/379 (33%), Gaps = 48/379 (12%)
Query: 88 YLFGKNVGQANVILIGHDGK-------------QMLNLDILIERDIAHLEMTLRRFI--- 131
Y+ G+ G +N + G + + + ++ + +
Sbjct: 119 YVTGQRKGTSNANVQVAGGNSNIDSNDKTPGGSTISIETNQEFQFWSTVKNEIHHILNTA 178
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLN 189
D ++ V D + G + + A + + L
Sbjct: 179 GDGSVHFTKVGDEWI--GPDGQKWEYNPLEPVVNPEAGMITVTGTARQVERVSRYLAALT 236
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
+ +V + V I +VR + G + ++S V+
Sbjct: 237 HQLKTEVMIDVRIIDVRINNNHSYGIDWNKIFNTSIRFTGDVTHGTTNSVTHNVSLKDGS 296
Query: 250 VLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ VL L+ + ++ P + ++ Q A + G + YK
Sbjct: 297 DIGDYLPGGGISFTFSGDLTEVLKFLKTQGDVTVVSSPRVMTLNNQPAMISVGQEIYYKL 356
Query: 298 VSS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
++ ++ V + G++L TP V G I L+I ++ +A ++
Sbjct: 357 TTTNKVGGSDTATSENEEVKSVFAGILLDITPEVDERGMITLKINPSITALANEEDAKNL 416
Query: 349 -------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
P + R+ + +++ G +L GL+ +EG+P+L IPILG F+
Sbjct: 417 QGVRTMPPDIKRRQIASVIKIKDGDHAILGGLITRGHGTKEEGLPVLENIPILGYAFKKE 476
Query: 402 RFNREETEIFIAATPFLVK 420
+ E+ + TP +++
Sbjct: 477 QKIDYTDELVLIITPHIIR 495
>gi|294141031|ref|YP_003557009.1| type III secretion system EscC protein [Shewanella violacea DSS12]
gi|293327500|dbj|BAJ02231.1| type III secretion system EscC protein, putative [Shewanella
violacea DSS12]
Length = 491
Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats.
Identities = 53/310 (17%), Positives = 117/310 (37%), Gaps = 34/310 (10%)
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--- 195
+ +V + G+V +++ + +++ ++ N + + G Q
Sbjct: 194 QYREQSVKIPGLVNVLKEMELGNQVANAVSGTVSNVSGPVFAADSRRNAIIVRGSSQDVT 253
Query: 196 ---------------VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
+ + V+I ++ KQ+G S + S SF +D + +S
Sbjct: 254 TYASLIKQLDNKPTMIEISVSILDIDASDFKQLGVDWSASAQLGNGSVSFNSDTSSENIS 313
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+ + +F L+ALE+ + + L+ P++ ++ A K
Sbjct: 314 -------TVIGNTGNFMVKLNALEKNSKAKVLSHPSVVTLNNVQAVLDKNVTFYTKL--E 364
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKA 356
+ + G +L TP ++ + L + + + V+ + +P + +
Sbjct: 365 GDKVAKLESVTTGTLLRVTPRLIEESGHTAVMLNLNIQDGQQSEAVSRSDPLPQVQNSEI 424
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T L SG ++++ G ++D + IPLL IP+LG LFR++ + +
Sbjct: 425 STQAILKSGESLLIGGFVQDRDETSDHKIPLLGDIPLLGGLFRSTEHHTQSVMRLFLIKA 484
Query: 417 FLVKPVAMRD 426
+PV D
Sbjct: 485 ---EPVNQGD 491
>gi|226327391|ref|ZP_03802909.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198]
gi|225203917|gb|EEG86271.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198]
Length = 367
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 58/344 (16%), Positives = 115/344 (33%), Gaps = 35/344 (10%)
Query: 105 DGKQMLNLDILIERDIAHLEMTLR-RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
+ +++ + I L + + E + + + TI + +
Sbjct: 30 NNEKISSTFIEERTSATEQSEELHHQLYPLNYADAERLGEQL----TNHTIPLLSQQGRV 85
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSIT- 220
+ S + + ++ + L + QV + I +D L ++G Q +
Sbjct: 86 IIDREANSLSIIDNSKTLSEIEDWLKLRDTPQQQVHITAHIVSSSQDALNELGTQWGLQA 145
Query: 221 --------GSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATA--- 268
++ + S + + S+ +
Sbjct: 146 LKTQTEATSTTVSNTISATSSLNSALSTPSLSALSLHQNTKNPLHYIAFNIARINGRLLE 205
Query: 269 -----------IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
+ +A P LT ++AS G + VS T V + + +
Sbjct: 206 LELSALEQEKQLSIIASPRLTTAHEKTASIKQGTEIP--YVSRDNEITQVQFKEAVLGME 263
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
TP + +I L ++ + P I + + S ++ T V + G TI+L G+ +
Sbjct: 264 VTPIIQRNKKIRLILKISQNTPGIALVQSGSEHLSIDKQEISTEVAIRDGETIMLGGIFQ 323
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
Q+ IP LS IP+LG LF + R E+ I TP L+
Sbjct: 324 QKQQEHTAKIPFLSSIPLLGVLFSHKRDQHSRHELVIFITPKLI 367
>gi|153003602|ref|YP_001377927.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5]
gi|152027175|gb|ABS24943.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5]
Length = 892
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/334 (16%), Positives = 114/334 (34%), Gaps = 54/334 (16%)
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
+ + G V+ D Q+ L + + + ++++ L+
Sbjct: 419 PSARPGGASDVTASLFSGDVKITADKQQNALLVQA-------SGADFQAIQRLVEKLD-R 470
Query: 192 GEDQVTLKVTIAEVRRDILKQIGF----------------------QHSITGSSSGPSKS 229
QV ++ I EV Q G ++ + S
Sbjct: 471 PRRQVFVEAVIMEVNLRDETQFGVGAHGIVPVDYRGDEGFIPISSQPGRVSSFDVTSAIS 530
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G G + S ++ AL+ + + L+ P + A + + T
Sbjct: 531 LGGFLTGLNGPPSGVVEDLLGIKVPSLGVIVQALQSSADVNVLSTPHILASDNEESEITV 590
Query: 290 GGQHLYKTVSS-----------------------STGATSVTTHDYGVVLHFTPTVLSPG 326
G ++ + S+ + + + L P + G
Sbjct: 591 GQNVPFQAGYAPAGLGNLLTGTTATTSTLGLGGLSSLVAPIQRQNVELRLKIKPQINEGG 650
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L I+ E +E ++ + P+ R A T + TIV+ GL+++ + IP
Sbjct: 651 NIRLTIE-EQTEEIVDRDPQLGPTTAKRTAKTQIVAKDQSTIVIGGLIQERNVRSVRKIP 709
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+L +PILG LFR+S ++ T + + TP++++
Sbjct: 710 VLGSLPILGWLFRDSTNTKQRTNLLLFLTPYIIR 743
>gi|116626816|ref|YP_828972.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116229978|gb|ABJ88687.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 752
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 53/257 (20%), Positives = 94/257 (36%), Gaps = 18/257 (7%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV- 250
QV + I EV + G + +GP F+ + G + +
Sbjct: 488 APRQVLIDAKIYEVDLNGAFAAGVSAYLDKKDTGP---FSRTLNAATGAGGLTLTTGALV 544
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----------KTVSS 300
L L A E A+ + ++ P++ A A+ G ++ S
Sbjct: 545 LRSHELLAALTASETASHSKVISAPSIIATDSVPATLNVGDDVPVLTSQAVAGGVQSSGS 604
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
S +V+ GV L V S G + L + VS P +A PS+ R T
Sbjct: 605 SVFTNTVSNRSTGVTLSIMARVNSSGIVTLIVNQNVSSPQPPPANSAIQSPSFSNRSFQT 664
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ + G T+ + G++ + Q G+P L ++P +GA F + + TE+ + TP +
Sbjct: 665 QLTVQDGDTVAIGGIILESNLQSSAGVPFLHRLPGIGAAFGAKSYTKSRTELVVFLTPRV 724
Query: 419 VKPVAMRDLSRPDDHYS 435
+ + D
Sbjct: 725 I--YDTNQMVDATDEIR 739
>gi|311235499|gb|ADP88352.1| type III secretion outer membrane pore, YscC/HrcC family
[Desulfovibrio vulgaris RCH1]
Length = 696
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 62/413 (15%), Positives = 125/413 (30%), Gaps = 55/413 (13%)
Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV-LHGM-------- 150
D + +A + + S RV + TV L G
Sbjct: 241 YAWAEDITVNSMDKTVTLPGVASILRAMVSGSPSSATRVTQETATVDKLSGTGLISQGRQ 300
Query: 151 ---VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----------------- 190
+QR + S+ + Q + + +N + +
Sbjct: 301 QKESGQSNQAQRGGQASQQDSGGAQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDL 360
Query: 191 -AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSFAADFGGKF 238
+ V + I ++ + + +G + T S+G K G
Sbjct: 361 DRPVELVEIHAAIVDIDTNFKRDLGVTYQATVGKDQRWAGGADVSTGTDKFTPLPVPGVP 420
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G S + F ++ALE+ R L P++ + A+ + + +
Sbjct: 421 QGSGLTLSTIYTMGSDYFLARINALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQV- 479
Query: 299 SSSTGATSVTTHDYGVVLHFTPT--VLSPGRIGLRIQTEVSEPVIGVNA-------GDMP 349
A + + G VL TP G +++ V + +P
Sbjct: 480 -QGYQAVDLFKVEAGTVLRVTPHIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIP 538
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ K +T + +G ++++ G + +G+P+L IP+LG LF+ + E
Sbjct: 539 PIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRME 598
Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
I TP +V+ + +L + + + S G
Sbjct: 599 RLILITPKVVR---LDNLPGTPPRVDDPAFHRTATQSDYAERTPTPPPSRRSG 648
>gi|225163988|ref|ZP_03726276.1| type II and III secretion system protein [Opitutaceae bacterium
TAV2]
gi|224801402|gb|EEG19710.1| type II and III secretion system protein [Opitutaceae bacterium
TAV2]
Length = 928
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 61/353 (17%), Positives = 115/353 (32%), Gaps = 81/353 (22%)
Query: 166 TFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITG 221
+ + ++ ++V N+L QV ++ +V+ L ++G S +G
Sbjct: 557 AYDGTAIYVTQTTANLERVRNILARYNDVRQVEIEAKFMDVQEGSLDELGISWMVNSFSG 616
Query: 222 SSSGPSKSFAADFGGKF-----------------------------------VSEGGDFS 246
+ + + G F + G S
Sbjct: 617 KFNAGTGTVVRSLSGAFGVTGASGGGGQIVTPFGTVDVPLSPPATPGTADTGSAVGNIAS 676
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---- 302
+ GV+ F + A+ + L+ P +T +SG A + Y T
Sbjct: 677 ITGVMGNFDVAAQIRAIAQKQGSDLLSAPKVTVLSGNPAFMVVAQELRYPQSYGETESEV 736
Query: 303 ------------------GATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGV 343
T + GV L TPTV I L + +V+E +
Sbjct: 737 GTSSGNGGGAAGVTITPGTPEEFVTRNVGVELRVTPTVEDDNYSITLDLNPKVTEFEGFI 796
Query: 344 NAGD------------------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
G P + R+ T V + G T+V+ GL +++++++ + +
Sbjct: 797 EYGGSSVAISGNTTVTLPSGYYQPIFSTREVTTKVTVWDGATLVMGGLTREEVKRVNDKV 856
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
P+L IP LG LF++ + ++ + + T LV P P
Sbjct: 857 PILGDIPFLGRLFKSKGESSQKRNLLVFVTANLVSPGGSPKKQ-PLQGVQPNS 908
>gi|78223066|ref|YP_384813.1| type II and III secretion system protein [Geobacter metallireducens
GS-15]
gi|78194321|gb|ABB32088.1| type II and III secretion system protein [Geobacter metallireducens
GS-15]
Length = 861
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 75/406 (18%), Positives = 136/406 (33%), Gaps = 70/406 (17%)
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V + T+ +F K ++ ++ L D LR + + V
Sbjct: 244 KVLNESTILIFPKTPEKSK-----QYEDLVVKTFFLNTLDAKKAVNLLRTMLQVRKVYVN 298
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+ +V+ + + + +E AN +V L
Sbjct: 299 EELNAIVVRDTSELVDVAGKILE--------------ANDVPD-----------AEVLLD 333
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
V + EV + ++ G S S F S + + +
Sbjct: 334 VEVIEVSKRNIENFGLALSKYAVSLNTQTPGGGFLNDTFSRASVSSSTGTTIQGTAGSEL 393
Query: 260 LHALERAT-------------------AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
L LA P + + + + FT G + T S+
Sbjct: 394 LQTFSWNGYSGFMTVPSASYSFGKSITNAEVLANPKIRVKNREKSKFTVGTRVPITTTST 453
Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPS 350
+ +V D GV L+ PT++ + +++ EVS +A + +
Sbjct: 454 TGTTGGFSVNVQYVDVGVKLNAEPTIMLNNEVSIKLGLEVSSIIDKQTVGGTDSATTVVT 513
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
R DT + L G T V+ GL++D+ Q+ K+ I LL IPI+G L N+ + ++ E+
Sbjct: 514 IGTRNLDTVLNLKDGETSVIGGLIEDNKQKGKQKIFLLGDIPIIGPLLSNNSNDNQKREL 573
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
+A TP LV+ V E D +F+ + + K
Sbjct: 574 ILAITPRLVRSV-----------TVPEPDLVSFWSGKEDDPSVVKP 608
>gi|34556961|ref|NP_906776.1| putative type II secretion system D [Wolinella succinogenes DSM
1740]
gi|34482676|emb|CAE09676.1| PUTATIVE TYPE II SECRETION SYSTEM D [Wolinella succinogenes]
Length = 731
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 59/347 (17%), Positives = 114/347 (32%), Gaps = 62/347 (17%)
Query: 143 DTVVLHGMVRTIQDSQR-------AVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGE 193
++ +L G + + Q Q + + + + + L+ +
Sbjct: 361 ESEILGGSLESSQAQQARTTKSESGAVIVNRGAGLVTVTGTSPQVDRVAQYIEELHARLQ 420
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS------------------------------- 222
QV + V+I VR + G + +
Sbjct: 421 SQVMIDVSILTVRHSKGQTTGVDWNQLYNLQNIAIHTKSTTTSNSSGSGSTSDTTSITTG 480
Query: 223 SSGPSKSFAADFGGKFVSEGG----DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
SG S G + G ++V S V+ L+ + +++ P +
Sbjct: 481 PSGTSIQQGTASGASVLGVGSHSQVGYAVNIFSQGVSLTRVIEFLQSYGDVTSVSNPKVL 540
Query: 279 AISGQSASFTSG-----------GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
++ Q A + G T +++ T + GV+L TP+V +
Sbjct: 541 TLNNQPAMISVGNIIRYRKSTVFQTSGSNTGTNTNTDTEYPSVFAGVLLDITPSVFND-E 599
Query: 328 IGLRIQTEVSEPVIG------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
I L+I +++ P+ + + V + G IVL GL+ Q+
Sbjct: 600 IMLKINPSITQTKSTDVENASTALETPPNLSTNQLSSLVRIKDGEKIVLGGLISKSNQKK 659
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
+ +PLL +P+LG LF + E+ I TP ++K L
Sbjct: 660 ENKVPLLGDVPVLGYLFSYNADVESTDEMVIVITPHIIKGSQGPSLQ 706
>gi|93006993|ref|YP_581430.1| type II and III secretion system protein [Psychrobacter
cryohalolentis K5]
gi|92394671|gb|ABE75946.1| type II and III secretion system protein [Psychrobacter
cryohalolentis K5]
Length = 792
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 44/276 (15%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV--- 239
K++ ++I QV ++ I K+IG + I + + +++ + +
Sbjct: 514 KLIGKIDIPVR-QVMIEARIVSATDSFSKEIGVRWGILSNGAANNRNLLVGGSNQTLWDL 572
Query: 240 ------------------------------------SEGGDFSVKGVLDRFSFETVLHAL 263
G + F + L A+
Sbjct: 573 KDFDVQTTTINGQTVSYPKYDITRPDNLNVDLGVDNPAGRIAFGLLGISDFMLDLELSAM 632
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
+ ++ P + Q+A +SG Q Y+ S++GAT+ + + + L TP +
Sbjct: 633 QADNRGEVISTPKILTSDKQTAKVSSGTQIPYQEA-SASGATTTSFKEAALSLEATPNIT 691
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
G+IGL++ P I N + T V + G TIVL G+ K+ +
Sbjct: 692 PDGKIGLQLLITNGTPTIINNQV---AIAEDSISTNVIVEDGQTIVLGGVFKNRTNNGVD 748
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P L +P +G FR + + E+ I TP L+
Sbjct: 749 KVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLI 784
>gi|281354921|ref|ZP_06241415.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
gi|281317801|gb|EFB01821.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
Length = 794
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 13/247 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GKFVSEGGDFSVK 248
QV ++ I E+ + G Q + G S +F SEG +
Sbjct: 496 PAQVLFQILIVEITLTDSNEFGLQFNNVSYGGGTGVSTGTNFNDIGMNDSSSEGFKLGIF 555
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSS 301
+ L AL I+ ++ P L S +A G ++
Sbjct: 556 DKDNPEENFGYLRALAGRDNIKVISSPQLLVTSNTTAKIQVGQDVPILTQDLTTSDSATG 615
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTT 359
S T + G++L P V S I ++I+ +VSE +A D P R +T
Sbjct: 616 NVTRSYTYEETGIILSLIPQVTSTDLISMQIEQKVSEAIKNTITSATDTPVISTRVLNTA 675
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ + +G T+V+ G++++ + +P+++ IP L F N+ + E TE+ + T ++V
Sbjct: 676 MTIANGKTMVIGGMIQEKNNDRLQSVPIIADIPFLRRFFGNTNQSVERTELLVLVTGYIV 735
Query: 420 KPVAMRD 426
+ +
Sbjct: 736 NGKSPVE 742
>gi|94987602|ref|YP_595535.1| putative type III secretion protein YscC [Lawsonia intracellularis
PHE/MN1-00]
gi|94731851|emb|CAJ55214.1| putative type III secretion protein YscC [Lawsonia intracellularis
PHE/MN1-00]
Length = 583
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/293 (15%), Positives = 98/293 (33%), Gaps = 24/293 (8%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------GKFVSEGGDF 245
V + I ++ + + +GF S + G G +
Sbjct: 289 VEIHAAIVDIDSEFKRDLGFTLQQGSSKKSMTMGGDFSTTQQSLPLEITKGTVEGGGLTY 348
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
S F + ALE R L +P++ + A+ + + + T
Sbjct: 349 STIYSKGVEFFLARVQALETEGEARVLGKPSVLTVDNIQATLENTSTYYIQVQGYQT--V 406
Query: 306 SVTTHDYGVVLHFTPTVLSPGR--------IGLRIQTEVSEPVIGVNAGDM-PSYRVRKA 356
+ + G VL TP ++ + + + V + + P + +
Sbjct: 407 DLFKVESGTVLRVTPHIIYNNDGTKSIKLVVAIEDNQNDNSTDPTVGSNVVLPPIKQTRI 466
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+T + +G ++++ G + +GIP+L IPI+G LF+ + ++ E I TP
Sbjct: 467 NTQGVVNTGQSLLIGGYYYEQQGVNDKGIPILKDIPIIGYLFKTNTKTSKKMERLILITP 526
Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
++ P ++ H ++ + + I + + +
Sbjct: 527 RIIMP---NTVTPIPAHVDDPSFHRSAVQDTYDDIKPKSSTGGGCSRKRRAPV 576
>gi|317486813|ref|ZP_07945629.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila
wadsworthia 3_1_6]
gi|316921976|gb|EFV43246.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila
wadsworthia 3_1_6]
Length = 614
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 58/313 (18%), Positives = 111/313 (35%), Gaps = 29/313 (9%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
G Q++ + +++ ++ N KV+ L+ + V + I ++
Sbjct: 250 GGQAAPQNATQVNIMADPRVNAVLVNDAEYRMPYYAKVIADLD-RPVELVEIHAAIVDID 308
Query: 207 RDILKQIGF----------QHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFS 255
D + +G S G SG F+ S G + S
Sbjct: 309 SDFKRDLGVTYQGANSRDKGWSTGGEFSGTGDKFSPLPTMGTPSGTGMNLSTIYTHGADF 368
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
F + ALE R L P++ + A+ + + + A + + G V
Sbjct: 369 FLARIQALEAEGEARMLGRPSVLTVDNVQATLENTSTYYIQV--EGYQAVDLFKVEAGTV 426
Query: 316 LHFTPTVLSPGR--------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
L TP ++ R + ++ S+ V+ +P + K +T + +G +
Sbjct: 427 LRVTPHIIRNERGQTSIKLAVSVQDDQNDSKDAP-VSDNSVPPIKQTKINTQAIVGAGQS 485
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----PVA 423
+++ G + GIP+L IP+LG LF+ + + E I TP ++ P
Sbjct: 486 LLIGGYYYEQKSTDASGIPILMHIPVLGNLFKTTSKGTKRMERLILITPKVIHLDEIPTT 545
Query: 424 MRDLSRPDDHYSV 436
+ P H S
Sbjct: 546 PPRVDEPTFHRSP 558
>gi|283786644|ref|YP_003366509.1| T3SS structural protein EscC [Citrobacter rodentium ICC168]
gi|15723915|gb|AAL06362.1|AF311901_14 EscC [Citrobacter rodentium]
gi|282950098|emb|CBG89732.1| T3SS structural protein EscC [Citrobacter rodentium ICC168]
Length = 512
Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 101/247 (40%), Gaps = 23/247 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ + V+I +V + L+Q+G S T ++ S +F + + + S + +
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQSSIAFNSS------AAQANISSSVISNA 327
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+F ++AL++ + + L++P++ ++ A K S S+ + G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385
Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
+L TP +L L V++ I +P + + T
Sbjct: 386 TLLRVTPRILDDTSNSLTGKRRERVRLLLDIQDGNQSVNQSNIQNAGSLLPEVQNSEMTT 445
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G +++L G ++D K+GIPLLS IP++G+LF ++ +
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505
Query: 419 VKPVAMR 425
++ +
Sbjct: 506 IRSASSE 512
>gi|325521797|gb|EGD00533.1| putative type IV pilus secretin [Burkholderia sp. TJI49]
Length = 215
Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 3/187 (1%)
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
G F + F++ + L ALE + ++ P + A G +
Sbjct: 1 TGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRAKAIVEQGAELP 60
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
Y+ G + V + L P + GR+ L + +V++ +G P+ +
Sbjct: 61 YQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTK 117
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T VE+ GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ +
Sbjct: 118 HVQTRVEVEDGGTVAIGGIYERLRRDDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFI 177
Query: 415 TPFLVKP 421
TP +V+
Sbjct: 178 TPTVVRA 184
>gi|237753431|ref|ZP_04583911.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229375698|gb|EEO25789.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 487
Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/285 (15%), Positives = 99/285 (34%), Gaps = 34/285 (11%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------- 217
L ++ + + + L+ + QV + V I VR + +K +G
Sbjct: 186 LISVKGDKKSLQKVESYIEALHKRLQKQVLIDVQILSVRHNNVKTMGINWDSLYNLQNLM 245
Query: 218 -------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
+ G + + G + + S ++ L+ ++
Sbjct: 246 IPPFSESATLGGNGEIGSTSGISITGGSKGSSVQYGLNIFSAGLSLNRIVEFLKGYGEVQ 305
Query: 271 TLAEPTLTAISGQSASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
+++ P + ++ Q A + G Q+ + + + GV+L TP
Sbjct: 306 SISNPKVLTLNNQPAMISVGDILRYKKSNIYQNTNAQTTLTNTNNEYPSIFAGVLLDITP 365
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLL 374
V I L++ +++ P+ + + V++ + ++L GL+
Sbjct: 366 LVFED-SIMLKVNPSITKTKDMQTKIAASAFDAPPNLTTNQLSSIVKVKNNQKVILGGLI 424
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ + IPLL IP++ LF + + EI TP ++
Sbjct: 425 AQNTAKESNKIPLLGDIPLIKPLFSYTHDSISTEEIVFIITPRII 469
>gi|323189406|gb|EFZ74687.1| hypothetical protein ECRN5871_2294 [Escherichia coli RN587/1]
Length = 512
Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + +
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+F ++AL++ + + L++P++ ++ A K S S+ + G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385
Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
+L TP +L L ++ + +P + + T
Sbjct: 386 TLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSSNQSNAQDASSTLPEVQNSEMTT 445
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G +++L G ++D K+GIPLLS IP++G+LF ++ +
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505
Query: 419 VKPVAMR 425
+K +
Sbjct: 506 IKSASSE 512
>gi|229588267|ref|YP_002870386.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
gi|229360133|emb|CAY46990.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
Length = 713
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 51/326 (15%), Positives = 98/326 (30%), Gaps = 20/326 (6%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
++ L L + +N + + + R
Sbjct: 253 TPNVPRLGNPLLGQMLGANGNAGQLDTGPTVTPRAPVSKSRIRVEADVRNNAVLIYDLPE 312
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
+ + ++ L++A + + + I ++ R L++ G S + A
Sbjct: 313 RQAMYRDLITQLDVARKL-IEIDAIILDIERTQLREFGVNWGFQNSRFRGGVNMAPGTSS 371
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ + +R F + ALE ++ P++ + Q A
Sbjct: 372 QV----------SIENRDRFYADIRALEAKGLATMVSNPSVLTLENQPAVIDFNRTQYIS 421
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN--AGDMPSY 351
VT G L P V + +I L + E + P
Sbjct: 422 PGRDYATILPVT---VGTSLQVVPRVTTGRGVHQIHLVVDIEDGNFDETNPERDPNHPDV 478
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEI 410
R K T + ++V+ G D ++ IPLL IP+LG LF ++ + E
Sbjct: 479 RRGKVSTQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKTLFSSTERHNNRRER 538
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSV 436
TP ++ P D +
Sbjct: 539 LFILTPRVIGDQDDPSRYLPQDDQAE 564
>gi|259909699|ref|YP_002650055.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcC protein [Erwinia pyrifoliae Ep1/96]
gi|224965321|emb|CAX56853.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcC protein [Erwinia pyrifoliae Ep1/96]
gi|283479785|emb|CAY75701.1| Type III secretion system outer membrane pore HrcC [Erwinia
pyrifoliae DSM 12163]
Length = 676
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 68/475 (14%), Positives = 138/475 (29%), Gaps = 40/475 (8%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73
L + + + V+ + G + + + + D + V+
Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELVKRFSEQREKKEDRRKVMTFPL 183
Query: 74 --PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRR 129
+ AD +H + G A ++ L+ + ++ +
Sbjct: 184 RYASVADRTIHYRDQTVVI---PGVATMLNELMNGKRAAPASASGSDSAPGGPDTTSMMQ 240
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
R+ + + G + D + +S + + + + + L+
Sbjct: 241 NTQTLLSRLSSRNKSANKAGGRDSDID-DVSGRISADVRNNALLIRDDDKRRDEYSQLIA 299
Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
Q V + I ++ R L ++ T S + G FVS
Sbjct: 300 KIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS------- 352
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
D F + ALE +A P++ + Q A +
Sbjct: 353 ----DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 406
Query: 308 TTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365
G L TP + G +++ ++ + + N + R T +
Sbjct: 407 QPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALISEN 466
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+VL G ++ IPLL IP +G LF + R + + TP L+
Sbjct: 467 RALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIGDQTDP 526
Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIGFIYK 474
D+ DA RV + + E + + + GF +
Sbjct: 527 TRYVTADNRQQLSDA----MGRVERRHSNVNQHDVVENALRDLAEGQSPAGFQVQ 577
>gi|312114563|ref|YP_004012159.1| type II and III secretion system protein [Rhodomicrobium vannielii
ATCC 17100]
gi|311219692|gb|ADP71060.1| type II and III secretion system protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 636
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 75/462 (16%), Positives = 158/462 (34%), Gaps = 55/462 (11%)
Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK-VIILQVPVDVQDVL----- 70
+ P A + + + ++ +K L V V ++V
Sbjct: 185 LVLAAFRSASPVAVNFRDAKLKDALKTLCDPYALNFVFDKNADNLDVSVSARNVSFEQAF 244
Query: 71 --VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
+ + A V +++++ + ++ ++ L+
Sbjct: 245 NMIMQSSNAAYKVLGTNSIFIYEDTP----------EKRKQYADRYFKTFHLSTLKAERM 294
Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
I +++ V+ V L G ++ I+D++ +E++E ++ +
Sbjct: 295 AEILKASMDVKTVFANNDL-GTIQ-IRDTRETLEVAERLIATND---------------- 336
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
++ L+V I E+ R +Q+G + + + P SF G ++ +
Sbjct: 337 --RKPAEIMLEVEILEIDRTKAEQLGLDYGSSITVQLPQVSFTDLANGAKLATNSVITFP 394
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGA 304
+ L+ RTL+ P + + GQ A G + ++ +
Sbjct: 395 --------TVTFNYLKTDVGARTLSNPRIRTVDGQPAKIHVGDRVPLQSSFVQDTTGQTR 446
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVEL 362
T HD G+ L P G I + ++ EVS + P+ R TT+ L
Sbjct: 447 TLFEYHDIGIQLDVIPKYHLDGSIFVDLKIEVSSLGSNLGTAAQPAYAIGSRNVHTTMIL 506
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPL-LSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
T +L GL+K++ Q G+P+ S + +L LF S +E+ + TP L++P
Sbjct: 507 RENETALLGGLIKEEEQHNMNGLPVERSGVSVLDRLFSTSSDKVGRSELLLTITPRLIRP 566
Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
+ R + + + E+
Sbjct: 567 QSFA--QRSATDFYSGTEGTYSIRAEHEYLKKAPESGLAPRY 606
>gi|39996877|ref|NP_952828.1| type II secretion system protein [Geobacter sulfurreducens PCA]
gi|39983765|gb|AAR35155.1| type II secretion system protein, putative [Geobacter
sulfurreducens PCA]
gi|298505890|gb|ADI84613.1| type II secretion system secretin lipoprotein PulQ [Geobacter
sulfurreducens KN400]
Length = 822
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 74/412 (17%), Positives = 138/412 (33%), Gaps = 79/412 (19%)
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V + T+ +F K +A M+ L D LR + I V
Sbjct: 244 KVLNESTILIFPKTPEKAK-----QYEDLMVKTFYLNSLDAKKAVNLLRTMLQVKKIYVN 298
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+ +V+ + A ++ E V L+
Sbjct: 299 EELNALVIR---DNPELIDVAGKILEANDVPDAE----------------------VLLE 333
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------------- 242
V + +V ++ + G S S + GG F S+
Sbjct: 334 VEVIQVSKNNSELFGLGLSRYAVSLN---ARTPGSGGDFFSDTFDPKVTTTSNDTTTVTT 390
Query: 243 -------GDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
F+ G + + ++ + L+ P + + + + FT G +
Sbjct: 391 TQVKNLLNLFNWNGYQGFLTVPSATYNFSKQLSNAEVLSNPKIRVKNREKSKFTVGTRVP 450
Query: 295 YKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
T SS+ +V D GV L+ P + + +++ EVS + G +
Sbjct: 451 ITTTSSTGSVGGVTVNVQYVDVGVKLNAEPVIQLNNEVTIKLGVEVSSIIGEKTVGSGDA 510
Query: 351 YR------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
R DT + L G T ++ GL++D + K+ I LL IP++G+L +
Sbjct: 511 ISSVVTIGTRNVDTVLNLKDGETSIIGGLIEDTKSKSKQKIWLLGDIPLIGSLLSSHNDR 570
Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
+++E+ +A TP +V+ V+ E D AF+ + + K
Sbjct: 571 YDKSELVLAITPRIVRAVS-----------VPEADVAAFWSGKEDDPTAVKP 611
>gi|266635497|gb|ABA39798.2| HrcC [Erwinia pyrifoliae]
Length = 676
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 68/475 (14%), Positives = 138/475 (29%), Gaps = 40/475 (8%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73
L + + + V+ + G + + + + D + V+
Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELVKRFSEQREKKEDRRKVMTFPL 183
Query: 74 --PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRR 129
+ AD +H + G A ++ L+ + ++ +
Sbjct: 184 RYASVADRTIHYRDQTVVI---PGVATMLNELMNGKRAAPASASGSDSAPGGPDTTSMMQ 240
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
R+ + + G + D + +S + + + + + L+
Sbjct: 241 NTQTLLSRLSSRNKSANKAGGRDSDID-DVSGRISADVRNNALLIRDDDKRRDEYSQLIA 299
Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
Q V + I ++ R L ++ T S + G FVS
Sbjct: 300 KIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS------- 352
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
D F + ALE +A P++ + Q A +
Sbjct: 353 ----DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 406
Query: 308 TTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365
G L TP + G +++ ++ + + N + R T +
Sbjct: 407 QPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALISEN 466
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+VL G ++ IPLL IP +G LF + R + + TP L+
Sbjct: 467 RALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIGDQTDP 526
Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIGFIYK 474
D+ DA RV + + E + + + GF +
Sbjct: 527 TRYVTADNRQQLSDA----MGRVERRHSNVNQHDVVENALRDLAEGQSPAGFQVQ 577
>gi|238752349|ref|ZP_04613827.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
[Yersinia rohdei ATCC 43380]
gi|238709390|gb|EEQ01630.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
[Yersinia rohdei ATCC 43380]
Length = 486
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 52/288 (18%), Positives = 101/288 (35%), Gaps = 12/288 (4%)
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVT 197
+ + L G S + + ++ +L++ Q+
Sbjct: 203 SAGNNLPLAGTEGQEDAHINMPLFSADPRQNAVIIRDRQANMPLYSSLISQLDQRPVQIE 262
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
+ VTI +V + Q+G S + S G SF D + D +F
Sbjct: 263 ISVTIIDVDAGDISQLGIDWSASTSIGGMGISFNRGL----AKGNSDGFSTVIGDTGNFM 318
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
L+AL++ + R L+ P++ ++ A K + + G +L
Sbjct: 319 VRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL--QGDKVAKLESVTSGSLLR 376
Query: 318 FTPTVLS-PGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGL 373
TP ++ G + + + + V+ + +P + T L G +++L G
Sbjct: 377 VTPRMIDADGVKEVLLNLNIQDGQQQVSLISSEPLPQIQNSDISTQATLRVGQSLLLGGF 436
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
++D + + IPLL IP+LG LFR++ V
Sbjct: 437 IQDKQIESQNKIPLLGDIPLLGGLFRSTEKQSHSVVRLFLIKAVPVDA 484
>gi|294055173|ref|YP_003548831.1| type II and III secretion system protein [Coraliomargarita
akajimensis DSM 45221]
gi|293614506|gb|ADE54661.1| type II and III secretion system protein [Coraliomargarita
akajimensis DSM 45221]
Length = 709
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 51/267 (19%), Positives = 105/267 (39%), Gaps = 21/267 (7%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
K++++ ++I QV ++V I EV + G + P + G V
Sbjct: 394 KELIDKIDIPLP-QVRIEVIITEVTLTENQASGLSSFAATFNDRPDITNLPVQGTGPVGL 452
Query: 242 GG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----Y 295
G +F++ + F+ VL E ++ L+ P++ +
Sbjct: 453 GLDNFNISSQIGDFAISAVLDLAEDDDNVKILSTPSIVVSHNEEGKINVSQSRPIETGTT 512
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-------------EPVIG 342
+S T + D G+ L TP + + G + + I+ V E
Sbjct: 513 TNTTSETVTNQIEYRDVGIQLTVTPLIGADGSVTMTIEQTVDTIFSESSTTNTGDEDGTT 572
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ P VR+A++T+ + I+L GL ++ + + P++ ++P++G L +
Sbjct: 573 SSVDTNPVIGVREANSTITVNDREVIILGGLQENQREVSRTYFPIIGRMPLIGDLLSGKQ 632
Query: 403 FNREETEIFIAATPFLVK-PVAMRDLS 428
TE+ I P +++ P A +L+
Sbjct: 633 IEYNRTELIIFVRPTILRNPQAATELT 659
>gi|83858602|ref|ZP_00952124.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633]
gi|83853425|gb|EAP91277.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633]
Length = 658
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 60/244 (24%), Positives = 101/244 (41%), Gaps = 12/244 (4%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV+++ I V + G S FA + G S FS +
Sbjct: 399 RAQVSIEAAIISVSLQDEFRFGVNWGA-APSEQIDVRFADNADGTAASVFPGFSATYL-- 455
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSSTGAT 305
E L+ L+ T I ++ P + A+ Q A G Q T +
Sbjct: 456 NTDIEATLNMLDAVTEIEVISRPNVMALHNQQAELQVGDQVPVITQSAVSVTNPDAPIVN 515
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPS 364
D GV+L TP V + G + + I EVS V + D P+ R R+ +T+ +PS
Sbjct: 516 QTAYRDTGVILSVTPHVRAGGIVEIDITQEVSSVVQTSSSGIDSPTIRQRRITSTLLVPS 575
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVA 423
G ++ L GL+ + G+P+L ++P++G +F + + + TE+ I P ++ P
Sbjct: 576 GQSVALGGLIATTRTTNERGVPVLRELPVVGRVFGSDSESVDRTELVILLKPTVITDPSQ 635
Query: 424 MRDL 427
D+
Sbjct: 636 PSDV 639
>gi|283781428|ref|YP_003372183.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
gi|283439881|gb|ADB18323.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
Length = 1314
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 59/275 (21%), Positives = 102/275 (37%), Gaps = 45/275 (16%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------ 244
V ++V IAEV ++Q+G + I S + F V+ G +
Sbjct: 811 RRPPMVIIQVMIAEVLLSDVEQLGVELGIQDSLLFDRGIGSVGFPFNNVALGNNSDATSL 870
Query: 245 -------------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
+ S ++ AL+++ ++ ++ P +
Sbjct: 871 ATRESVAGQGLSSFGVGRTDPTLGYGGLVLSASSESVSVLVRALQQSRRLQVISRPQVQT 930
Query: 280 ISGQSASFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
+ Q A G + T S + + + G++L TP G I + I E
Sbjct: 931 LDNQPAFVQVGARVPRITSSQLTVNGTINNTVLENVGIILGVTPRTAPDGMIVMEIDAEK 990
Query: 337 SEPVIGVNAGDM-----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
SE + P R+ A TTV SG T+++ GL+ + Q+ +
Sbjct: 991 SELGPEAEGIPISINSNGDVIRSPQIRIATAQTTVSARSGQTVIIGGLITKNQQESTRRV 1050
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
P L IP+LG LFR + E E+ I TPF+++
Sbjct: 1051 PYLGDIPVLGRLFRFDSVSDERRELLIILTPFIMQ 1085
>gi|329901079|ref|ZP_08272701.1| Type III secretion outermembrane pore forming protein
(YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium
IMCC9480]
gi|327549244|gb|EGF33826.1| Type III secretion outermembrane pore forming protein
(YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium
IMCC9480]
Length = 432
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/227 (19%), Positives = 89/227 (39%), Gaps = 4/227 (1%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
Q+ ++ I ++ R L Q+G + T S + + + K S S + +
Sbjct: 67 PQQIEIEALIVDIDRSQLNQLGAEWGFTAGSVSATFNGMST-DSKGASLPISGSTLLIKN 125
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+F L+A+E R LA+ T++ + +A V + +
Sbjct: 126 AANFYAKLNAMENKGDARILAKQTISTLENIAAVLDLSQSRYLPLV--GERVVDLANVNV 183
Query: 313 GVVLHFTPTVLSPGRIG-LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
G +L TP ++ G + +R+ + + +A + T + T+++
Sbjct: 184 GTMLKVTPRIVREGPLTRVRLDINIEDGAFSADAASSTNVTRSTITTQAIIEPQHTLLIG 243
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
G + Q ++ IP+L IP+ G LF+N+ + E TP +
Sbjct: 244 GYHSEAKTQSRQKIPVLGDIPVFGGLFQNNSDSVNNRERLFLITPRI 290
>gi|254443244|ref|ZP_05056720.1| Bacterial type II and III secretion system protein
[Verrucomicrobiae bacterium DG1235]
gi|198257552|gb|EDY81860.1| Bacterial type II and III secretion system protein
[Verrucomicrobiae bacterium DG1235]
Length = 582
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 74/498 (14%), Positives = 163/498 (32%), Gaps = 97/498 (19%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
A+ + ++ D + L+ ++ V +++ AD+
Sbjct: 66 PQAEEEVAQGEEQNGVSSLDDAFASPLGQEMTLDASDLISVDYPNEEIRTVLRNVADLYS 125
Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI--------------------------- 114
+ + + +G ++ L +Q+ ++ +
Sbjct: 126 LN---LVVPDTLIGTTSIKLRDVTWRQIYSVVLDPVGYTFIEEGSIIKIVSRDALNIEPP 182
Query: 115 ------LIERDIAHLEMTLRRFIADSN---IRVEMVSDTVVLHGMVRTIQDSQRAVE--- 162
+ + + TLR + S ++V+ S+ +++ ++D ++ VE
Sbjct: 183 ITEIFMVNYAEADSIASTLRNLVDSSKGGAVQVDTRSNALIVSERASKMEDIRQVVERLD 242
Query: 163 -------LSETFLSQSGRNQYANSSSKKVMNLLNI--------------AGEDQ------ 195
+ F+ + + + + + Q
Sbjct: 243 KPTQQVFIETRFIEVTNTDVKNIGVNWSTLRNYGVSVGNINKQWGDSFQRQRSQGSNEDK 302
Query: 196 ---VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--------------KF 238
++ E L+ +G ++ I ++ A G
Sbjct: 303 NASTNVEGVTFEGSDSSLEGVGVRNGILRNNLTGETIIDATSVGESTLISSAVKDLYSLV 362
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ G + S V F VL AL+ R ++ PT+ ++ Q A + G Q
Sbjct: 363 DTSGLNRSSSAVFTADQFGFVLSALKEQGGSRLVSNPTVVTLNNQEAMISVGEQFPIPNY 422
Query: 299 SSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----GVNAGDM 348
+ + D G++L TP+V G I +++ EVS G +
Sbjct: 423 QYNEETGGFEVSGFEFKDIGIILKVTPSVNHTGLITMKVVPEVSSRTGERSFGGAGNASI 482
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P R+ +T + L G T+ + GL++ + K +P+L K+P LG LF++ + +
Sbjct: 483 PIISTRRTETRIALKDGFTMGIGGLMESTGTEDKNHVPVLGKVPGLGRLFKHESKSETKR 542
Query: 409 EIFIAATPFLVKPVAMRD 426
+ I T ++ P D
Sbjct: 543 NLLIFITARIL-PSEEAD 559
>gi|212711709|ref|ZP_03319837.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM
30120]
gi|212685811|gb|EEB45339.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM
30120]
Length = 567
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 61/351 (17%), Positives = 111/351 (31%), Gaps = 31/351 (8%)
Query: 82 HSPRTMYLFGKN---VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFI--ADS 134
+ RT L G++ G VI L + G + + + + +
Sbjct: 197 VTDRTYSLRGQSVTVPGMLTVISDLFKNGGGSVEEALNVEPIKLNTSGDDIDALMDTPIG 256
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
+V G S A S + + + G V NL N
Sbjct: 257 GGSPVENRQLIVKRGNASNSAFSLVAHPDSNSLIVK-GSQSQIRYVRDLVKNLDN--RRR 313
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
QV L + I ++ R L +G + +G F+ + D
Sbjct: 314 QVELSLWIIDITRSELDNLGVNWEVGSFKAGGG--------------SISFNRSTLPDSS 359
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
F + AL + + ++ P L A F + K ++ YG
Sbjct: 360 KFLVQIDALSKNGNSQIVSRPVLLTQENVPALFDNNTSFYAKL--QGERIATLEQVTYGT 417
Query: 315 VLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
++ P + + + + E N +PS +T + +++
Sbjct: 418 MISVMPRISGGQSVEMEVNIEDGAESRDSSGKTSNVEGLPSVNRTSINTVARIAKDSSLL 477
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G +D + IPLL IP +G LFR+S N+++ P L+
Sbjct: 478 IGGYTRDQYIDNESKIPLLGDIPWIGGLFRHSSTNQQKMVRLFLIQPRLLD 528
>gi|160872504|ref|ZP_02062636.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli]
gi|159121303|gb|EDP46641.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli]
Length = 442
Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats.
Identities = 52/288 (18%), Positives = 111/288 (38%), Gaps = 29/288 (10%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIA 203
+L T+ +Q V L+ S + + ++++L+ + Q+ ++ +
Sbjct: 148 LLKDKANTLLSAQAIVN--ADNLTNSLWIKDSPVQMNRIIHLIKKLDKPIGQILIEARVV 205
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAAD----------------------FGGKFVSE 241
+ ++ K++G Q +++ +
Sbjct: 206 SIDQNKEKELGAQFNLSRMRPVNDLLKSTLRNEVSNQNTHLLQHLTMDLPLFSANSLGLA 265
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ + + L ALE+ A ++ P L Q A +G + Y+ +S
Sbjct: 266 SLGLRLLNLGKNSFLDLELSALEKEGAAEVISTPHLITADQQPAFIEAGDEIPYQEKASG 325
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
G + + + L TP ++ RI L + EV++ D P+ + R T +
Sbjct: 326 GGTSLI-FKKAVLSLKVTPQIMPQERIILDL--EVNQDQPNSVMVDAPTIKARGIKTQII 382
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ SG TIVL G+ + +L++ +P L +P++G LFR ++ +E
Sbjct: 383 VKSGETIVLGGVYEYSQGKLEQRVPFLGSLPLIGRLFRLTKVYNRRSE 430
>gi|310766437|gb|ADP11387.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcC protein [Erwinia sp. Ejp617]
Length = 676
Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats.
Identities = 68/475 (14%), Positives = 138/475 (29%), Gaps = 40/475 (8%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73
L + + + V+ + G + + + + D + V+
Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELVKRFSEQREKKEDRRKVMTFPL 183
Query: 74 --PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRR 129
+ AD +H + G A ++ L+ + ++ +
Sbjct: 184 RYASVADRTIHYRDQTVVI---PGVATMLNELMNGKRAAPASASGSDSAPGGPDTTSMMQ 240
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
R+ + + G + D + +S + + + + + L+
Sbjct: 241 NTQTLLSRLSSRNKSANKAGGRDSDID-DVSGRISADVRNNALLIRDDDKRRDEYSQLIA 299
Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
Q V + I ++ R L ++ T S + G FVS
Sbjct: 300 KIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS------- 352
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
D F + ALE +A P++ + Q A +
Sbjct: 353 ----DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 406
Query: 308 TTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365
G L TP + G +++ ++ + + N + R T +
Sbjct: 407 QPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALISEN 466
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+VL G ++ IPLL IP +G LF + R + + TP L+
Sbjct: 467 RALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIGDQTDP 526
Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIGFIYK 474
D+ DA RV + + E + + + GF +
Sbjct: 527 TRYVTADNRQQLSDA----MGRVERRHSNVNQHDVVENALRDLAEGQSPAGFQVQ 577
>gi|71906532|ref|YP_284119.1| type II and III secretion system secretin [Dechloromonas aromatica
RCB]
gi|71846153|gb|AAZ45649.1| type II and III secretion system protein:Secretin,
N-terminal:Secretin/TonB, short N-terminal
[Dechloromonas aromatica RCB]
Length = 585
Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats.
Identities = 50/292 (17%), Positives = 92/292 (31%), Gaps = 53/292 (18%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228
+ + + E QV L+ I EV + Q G S G +
Sbjct: 264 DEYLKATQLVVERQVMLEAKIIEVSLNDSYQTGINWSKFGGIANRFSLGIAAPSATLAGS 323
Query: 229 -----------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
+ G G +F +L LE ++
Sbjct: 324 GVISGSAAGVSGGTAVAAVPGSGGAMATGPTGRGFFGLTFQSNNFAALLSFLEGQGDVQV 383
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-------------GATSVTTHDYGVVLHF 318
L+ P + + Q A G + T S+ ++ G+ L
Sbjct: 384 LSSPRIATTNNQKAVLKVGTDDYFVTGISTNVTTGTGTGGNVVTPNITLQPFFSGISLDV 443
Query: 319 TPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
TP + G I L + VS +G + S + ++D+ V + G +
Sbjct: 444 TPQIDDEGNIILHVHPSVSVVEEKSKSVNLGDLGTYTLPLASSTINESDSIVRVQDGSIV 503
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ GL+ + + G+P +S +P LG LF + + E+ I +++
Sbjct: 504 AIGGLMSQEQNTNRYGLPGISGVPGLGLLFGQKSVSNRKRELVILMKSTVIR 555
>gi|146343151|ref|YP_001208199.1| general secretion pathway protein D [Bradyrhizobium sp. ORS278]
gi|146195957|emb|CAL79984.1| General secretion pathway protein D [Bradyrhizobium sp. ORS278]
Length = 768
Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 21/247 (8%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-------V 247
QV + TIAEV G Q ++ G + + S + +
Sbjct: 488 QVGIDATIAEVTLTNELSYGVQAYLSSKVLGLGTDRGSITNTQTTSVATATTAAATTALI 547
Query: 248 KGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
L F+F +L AL T+++ L+ P+L I+ Q+A+ G T S
Sbjct: 548 NRALPGFNFLIGHEASPNMILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGS 607
Query: 300 ------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
S+T ++ + G++L P + + G + L ++ E+S A P+
Sbjct: 608 ATVLSSSNTVVNTIDYRNTGIILRVVPRIAANGNVRLEVEQEISNVAAQTAASLTPTVSQ 667
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
RK + + + +G T++LAGL+ + + GIP +IPILG F + TE+ I
Sbjct: 668 RKVKSAISVANGQTVLLAGLISEQQTGNRNGIPGFDEIPILGDTFSHQDKKGTRTELIIF 727
Query: 414 ATPFLVK 420
P +++
Sbjct: 728 IRPQIIR 734
>gi|47420041|gb|AAT27370.1| pIV [VCSM13 interference-resistant helper phage]
Length = 426
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 38/355 (10%)
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152
N ++G + + + + I L + + V +D V +
Sbjct: 80 NFDMVGSNPSIIQKYNPNNQDYIDELPSSDNQEYDDNSAPSGGFFV-PQNDNVTQTFKIN 138
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194
++ + E F+ + S NLL ++ D
Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSAPKDILDNLPQFLSTVDLPTD 196
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
Q+ ++ I EV++ F + + S GG F G+ +
Sbjct: 197 QILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307
+ AL+ + + L+ P + +SGQ S + G + T + ++
Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTI 312
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ G+ + P ++ G I L I ++ A D+ R TTV L G T
Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
++L GL G+P LSKIP++G LF + + EE+ +++ +V+ +
Sbjct: 372 LLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426
>gi|153902280|dbj|BAF74221.1| protein IV [Enterobacteria phage f1]
Length = 426
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 38/355 (10%)
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152
N ++G + + + + I L + + V +D V +
Sbjct: 80 NFDMVGSNPSIIQKYNPNNQDYIDELPSSDNQAYDDNSAPSGGFFV-PQNDNVTQTFKIN 138
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194
++ + E F+ + S NLL ++ D
Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSAPKDILDNLPQFLSTVDLPTD 196
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
Q+ ++ I EV++ F + + S GG F G+ +
Sbjct: 197 QILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307
+ AL+ + + L+ P + +SGQ S + G + T + ++
Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTI 312
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ G+ + P ++ G I L I ++ A D+ R TTV L G T
Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
++L GL G+P LSKIP++G LF + + EE+ +++ +V+ +
Sbjct: 372 LLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426
>gi|94968501|ref|YP_590549.1| type II and III secretion system protein [Candidatus Koribacter
versatilis Ellin345]
gi|94550551|gb|ABF40475.1| type II and III secretion system protein [Candidatus Koribacter
versatilis Ellin345]
Length = 808
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 67/476 (14%), Positives = 147/476 (30%), Gaps = 71/476 (14%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ------- 67
+ S + I + + +++ +
Sbjct: 333 AVRSLEAASVMATTIAKDKVDNVLPPTASEAPAGAVNLAQEQQTQQHSAQPASGPRYTGE 392
Query: 68 --DVLVSDPTKAD----VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
V + D D + S + L G ++L Q L++ +
Sbjct: 393 PISVNLKDVDLKDFFRLIHEISGLNVVLDPSVKGTVTLVLDDVPWDQALDIVLRNNGLDR 452
Query: 122 HLEMTLRRFIADSNIRVEMVS------------DTVVLHGMVRTIQDSQRAVELSETFLS 169
L+ + R + +R E V+ D V + + + + L + +
Sbjct: 453 QLDGNVLRIASIETLRTEAVARRQQLEAQALAVDKVTVTRFLSYARSADLVPTLKKFLSA 512
Query: 170 QSGRNQYANSSS-------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
+ ++ ++++ L+ +V ++ + R ++++G Q
Sbjct: 513 RGDIIADGRMNALVISDIPGVIPSLDRLISQLD-RKTQEVEIEARVVAATRTFVRELGIQ 571
Query: 217 HSITGSSSGPSKSFAADFGGKFVS--------------------------------EGGD 244
+ S S + G +
Sbjct: 572 LGGGWGGASTSVSGNPNAGFGSTNFKNPAGQPITGAPFPISTTGAFPLFTNFQVLNPTAG 631
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ + + + L A E+ ++ L+ P + + +A G + T+S G
Sbjct: 632 LELINIGHSYGLDLYLSAAEQRGLLKILSRPRVVTQNNVTALVRQGFRLPVVTLSQLNGP 691
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+VT D + L TP + I L + E + P P ++ T V +
Sbjct: 692 PTVTYVDAFLRLTVTPQITVENTIFLAVDVENTTPDFTRTVLGNPILLTQQTTTQVLVTD 751
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
GGT+ + G+++ + +P+L IPIL LF + N + E+ TP +V+
Sbjct: 752 GGTVTIGGVVQTQNTLTSQEVPILGDIPILKYLFMHKTTNTQTQELIFFITPKIVQ 807
>gi|27550050|gb|AAO18033.1| LscC [Photorhabdus luminescens]
Length = 621
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 52/356 (14%), Positives = 116/356 (32%), Gaps = 30/356 (8%)
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDIL---IERDIAHLEMTLRRFIADSNIRVEMV 141
+ L + G V + +++ I + + L R ++D+N+
Sbjct: 179 QQSLLRSEKTGALTVEIFPLKYASVVDRKIQYRDTSIEAPGVATILSRLLSDTNVT---- 234
Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGR--NQYANSSSKKVMNLLNIAGEDQVTLK 199
+ G + + + +L+N+ + ++
Sbjct: 235 ----TVTGEASSSTGGSYSSRAVVQAEPSLNAIIVRDNPERMPMYAHLINVLDKPSARIE 290
Query: 200 V--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---------FVSEGGDFSVK 248
V +I ++ + L ++G + ++ G+ + S+
Sbjct: 291 VALSIVDIDANNLSELGVDWQVGINTGPRHIIDITTSAGEKKEGKEKGESIGSAALGSLV 350
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
+ LE + + ++ PTL A + + K + +
Sbjct: 351 DRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQAVIDNNETYYVKV--NGERVAELK 408
Query: 309 THDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPS 364
+ YG +L P V+ G I L + E + +P+ DT +
Sbjct: 409 SLTYGTMLRMIPRVIQVGDSPEISLDLHIEDGNQKPNSSGRDGIPTISRTVVDTVARVGH 468
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G ++++ G+ +D++ Q+ +P L IP LG LFRN+ + P L+
Sbjct: 469 GQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNTSEQVRRSVRLFIIEPRLID 524
>gi|138047|sp|P03664|G4P_BPFD RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
Short=G4P; Flags: Precursor
gi|8489183|gb|AAF75602.1|AF217317_5 morphogenetic protein IV [Filamentous phage cloning vector fd-tet]
gi|215404|gb|AAA32312.1| IV [Enterobacteria phage fd]
gi|8698959|gb|AAF78531.1| protein IV [Filamentous phage display vector fMCS1]
gi|21667075|gb|AAM73892.1| morphogenetic protein IV [Filamentous phage display vector f8-5]
gi|21667089|gb|AAM73904.1| morphogenetic protein IV [Filamentous phage display vector c8-4]
gi|223541|prf||0812197E DNA,phage
Length = 426
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 64/339 (18%), Positives = 120/339 (35%), Gaps = 33/339 (9%)
Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
+ D + E + ++ V +D V + ++ + E F+
Sbjct: 96 PNSQDYIDELPSSDIQEYDDNSAPSGGFFV-PQNDNVTQTFKINNVRAKDLI-RVVELFV 153
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDIL 210
+ S NLL ++ DQ+ ++ I EV++
Sbjct: 154 KSNTSKSSNVLSVDG-SNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA 212
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
F + + S GG F G+ + + AL+ + +
Sbjct: 213 LDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGDVLGLSVRALKTNSHSK 268
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVL 323
L+ P + +SGQ S + G + T + +V + G+ + P +
Sbjct: 269 ILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTVERQNVGISMSVFPVAM 328
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
+ G I L I ++ A D+ R TTV L G T++L GL
Sbjct: 329 AGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDS 387
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
G+P LSKIP++G LF + + EE+ +++ +V+ +
Sbjct: 388 GVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426
>gi|166211|gb|AAA32218.1| protein IV [Enterobacteria phage f1]
gi|58091841|gb|AAW65343.1| gene IV protein [synthetic construct]
gi|58091857|gb|AAW65354.1| gene IV protein [synthetic construct]
gi|153902269|dbj|BAF74211.1| protein IV [Enterobacteria phage f1]
gi|262064184|gb|ACY07165.1| IV [Enterobacteria phage f1]
Length = 426
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 38/355 (10%)
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152
N ++G + + + + I L + + V +D V +
Sbjct: 80 NFDMVGSNPSIIQKYNPNNQDYIDELPSSDNQEYDDNSAPSGGFFV-PQNDNVTQTFKIN 138
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194
++ + E F+ + S NLL ++ D
Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSAPKDILDNLPQFLSTVDLPTD 196
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
Q+ ++ I EV++ F + + S GG F G+ +
Sbjct: 197 QILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307
+ AL+ + + L+ P + +SGQ S + G + T + ++
Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTI 312
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ G+ + P ++ G I L I ++ A D+ R TTV L G T
Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
++L GL G+P LSKIP++G LF + + EE+ +++ +V+ +
Sbjct: 372 LLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426
>gi|297171846|gb|ADI22835.1| type II secretory pathway, component PulD [uncultured nuHF2 cluster
bacterium HF0500_31B05]
Length = 815
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 59/287 (20%), Positives = 115/287 (40%), Gaps = 27/287 (9%)
Query: 174 NQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
++ + +K++N+L+ + Q+ ++ + EV + L+ IG + + + + S
Sbjct: 254 DKNEPEALEKLINVLHTQIDVPAQQIFIEALVIEVNTNRLRDIGVELTGSKNHVQGSFER 313
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ FS + D S + L AL L+ P++ ++ + A G
Sbjct: 314 SEGNPLT----TLLFSRESFTDFLSLKGKLEALVEIGDAEILSSPSVLVLNDRQARVQVG 369
Query: 291 GQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA- 345
Q ++ T + G+VL+ P + ++ ++I+T +S
Sbjct: 370 RQIPIVRSTTPTAGTTVKGIEYFPIGIVLNLRPRINLDQSQVTIQIETIISSISTESATK 429
Query: 346 ---------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
P R +T V + G ++ GLL + + K G+P LS +P LG
Sbjct: 430 LEDGVSEDISFAPIVDNRLVETYVRVADGTPFIIGGLLSTERLESKVGVPFLSAVPFLGH 489
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
LF R + E+ + TP +V P+ R+ S Y + D+ F
Sbjct: 490 LFSRKRVENTQREVIVVITPHIV-PLETRNFS-----YLIPKDSDLF 530
>gi|89111142|dbj|BAE80232.1| HrcC [Acidovorax avenae subsp. avenae]
Length = 683
Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats.
Identities = 52/295 (17%), Positives = 112/295 (37%), Gaps = 18/295 (6%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQ-------YANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
T + +A E F + G N + + +++ L+ V L+ TI E
Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMAEYESLIHRLD-QKPQLVELEATIIE 456
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
V D + +G S+ +S + + S S + ++ALE
Sbjct: 457 VNSDSVDALGVNWSLRAGTSSIATNL------PGPSTPAALSTIVLDAGRHLLANVNALE 510
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
R L++P++ ++ ++A + + + ++ + G +L TP V +
Sbjct: 511 AQGKARILSKPSVLGVANRAAVM--REKRVATVRVAGNLEANLFQIEAGTLLQMTPQVTA 568
Query: 325 -PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
G+ +++ + + N +P + + T + G ++++ G+ +
Sbjct: 569 VEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQD 628
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+P LSK+P++G +FRN+ TE TP ++ A +S
Sbjct: 629 NAVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683
>gi|238764026|ref|ZP_04624981.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
[Yersinia kristensenii ATCC 33638]
gi|238697697|gb|EEP90459.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
[Yersinia kristensenii ATCC 33638]
Length = 481
Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats.
Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 10/228 (4%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
Q+ + VTI +V + Q+G S + S G SF + + +
Sbjct: 252 RPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSGE----PQNSANGFSTVIG 307
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
D +F L+AL++ + R L+ P++ ++ A K + +
Sbjct: 308 DSGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL--QGDKVAKLESIT 365
Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367
G +L TP ++ + L + + + +++ + +P + T L G +
Sbjct: 366 SGSLLRVTPRMIDADGVKEVLLNLNIQDGQQQASISSSEPLPEIQNSDISTQATLRVGQS 425
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
++L G ++D + + IPLL IP+LG LFRN+
Sbjct: 426 LLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRNTNKQSHSVVRLFLIK 473
>gi|170766764|ref|ZP_02901217.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia albertii TW07627]
gi|170124202|gb|EDS93133.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia albertii TW07627]
gi|315617521|gb|EFU98127.1| conserved hypothetical protein [Escherichia coli 3431]
Length = 512
Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 102/247 (41%), Gaps = 23/247 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + +
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------AAQANISSSVISNA 327
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+F ++AL++ + + L++P++ ++ A K S S+ + G
Sbjct: 328 NNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385
Query: 314 VVLHFTPTVLSP----------GRIGL-----RIQTEVSEPVIGVNAGDMPSYRVRKADT 358
+L TP +L R+ L S+ I +P + + T
Sbjct: 386 TLLRVTPRILDDTPNSLTGKRRERVRLLLDIQDGNQSTSQSNIQDTGSLLPEVQNSEMTT 445
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G +++L G ++D K+GIPLLS IP++G+LF ++ +
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505
Query: 419 VKPVAMR 425
+K +
Sbjct: 506 IKSASSE 512
>gi|27381133|ref|NP_772662.1| general secretion pathway protein D [Bradyrhizobium japonicum USDA
110]
gi|27354300|dbj|BAC51287.1| blr6022 [Bradyrhizobium japonicum USDA 110]
Length = 793
Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats.
Identities = 60/331 (18%), Positives = 123/331 (37%), Gaps = 34/331 (10%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R NQ + ++ + ++ + Q+ ++ TIAEV + G Q
Sbjct: 471 RITADVTNNAVLVYANQESQRIVEQTIRQID-RPQRQIAIEATIAEVTLNDQLNYGVQFF 529
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGG-------------------DFSVKGVLDRFSFETV 259
+ S + + + + S V
Sbjct: 530 LASQKGSISNTISGVSNSATIGSNTEPASNAVNAAAGALLGRALPGFNFLIGAENSPRVV 589
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYG 313
L AL T ++ L+ P+L + Q+A+ G Q + T +++ T ++ + G
Sbjct: 590 LDALHGITNVKVLSNPSLVVLDNQAATLQVGDQVPFSTGTATVLTANNTVVNTIDYKNTG 649
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
++L P + G + L I+ E+S G P+ R+ +++ + SG T++LAGL
Sbjct: 650 IILRVLPRANANGNVVLDIEQEISSVAAGSANSLTPTISQRRVKSSIAVTSGQTVLLAGL 709
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
+ + + ++G+P+L IP +G F + R TE+ + P ++K D
Sbjct: 710 ISETENRQRQGLPILDSIPGMGDAFSHQTTARARTELILFIRPTVIKDGV--------DA 761
Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
+ + ++ + R+ P
Sbjct: 762 HVIAEEMRTKMNGRLVGTSNPVVTVSPPKAA 792
>gi|89111175|dbj|BAE80264.1| HrcC [Acidovorax avenae subsp. avenae]
Length = 683
Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats.
Identities = 55/294 (18%), Positives = 110/294 (37%), Gaps = 16/294 (5%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN--IAGEDQ----VTLKVTIAEV 205
T + +A E F + G N M+ I DQ V L+ TI EV
Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEV 457
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
D + +G S+ +S + + S S + ++ALE
Sbjct: 458 NSDSVDALGVNWSLRAGTSSIATNL------PGPSTPAALSTIVLDAGRHLLANVNALEA 511
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS- 324
R L++P++ ++ ++A + + + ++ + G +L TP V +
Sbjct: 512 QGKARILSKPSVLGVANRAAVM--REKRVATVRVAGNLEANLFQIEAGTLLQMTPQVTAV 569
Query: 325 PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
G+ +++ + + N +P + + T + G ++++ G+ +
Sbjct: 570 EGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQDN 629
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+P LSK+P++G +FRN+ TE TP ++ A +S
Sbjct: 630 AVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683
>gi|332159936|ref|YP_004296513.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|318607512|emb|CBY29010.1| secretion system apparatus SsaC [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664166|gb|ADZ40810.1| Type III secretion outer membrane pore, YscC/HrcC family [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
Length = 493
Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats.
Identities = 53/301 (17%), Positives = 107/301 (35%), Gaps = 30/301 (9%)
Query: 139 EMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
+ V L G+V +++ + L+ S+ S+ N + I
Sbjct: 191 QYRDQQVQLPGLVSVLREMSAGNHLPLAGEKESEDAPVSAPLFSADPRQNAVIIRDRQAN 250
Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
Q+ + VTI +V + Q+G S + S G SF +
Sbjct: 251 MPLYSSLITQLDQRPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGVSFNSGE---- 306
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ D + + +F L+AL++ + R L+ P++ ++ A K
Sbjct: 307 AAPHSDGFSTVIGNTGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL- 365
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIG-LRIQTEVSEPVIG---VNAGDMPSYRVR 354
+ + G +L TP ++ + + + + + ++ +P +
Sbjct: 366 -QGDKVAKLESITSGSLLRVTPRMIDSDGVKEVLLNLNIQDGQQQAPLSSSEPLPEIQNS 424
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T L G +++L G ++D + + IPLL IP+LG LFR++
Sbjct: 425 DISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTNKQSHSVVRLFLI 484
Query: 415 T 415
Sbjct: 485 K 485
>gi|326315361|ref|YP_004233033.1| type III secretion outer membrane pore, YscC/HrcC family
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323372197|gb|ADX44466.1| type III secretion outer membrane pore, YscC/HrcC family
[Acidovorax avenae subsp. avenae ATCC 19860]
Length = 683
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 55/294 (18%), Positives = 110/294 (37%), Gaps = 16/294 (5%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN--IAGEDQ----VTLKVTIAEV 205
T + +A E F + G N M+ I DQ V L+ TI EV
Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEV 457
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
D + +G S+ +S + + S S + ++ALE
Sbjct: 458 NSDSVDALGVNWSLRAGTSSIATNL------PGPSTPAALSTIVLDAGRHLLANVNALEA 511
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS- 324
R L++P++ ++ ++A + + + ++ + G +L TP V +
Sbjct: 512 QGKARILSKPSVLGVANRAAVM--REKRVATVRVAGNLEANLFQIEAGTLLQMTPQVTAV 569
Query: 325 PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
G+ +++ + + N +P + + T + G ++++ G+ +
Sbjct: 570 EGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQDN 629
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
+P LSK+P++G +FRN+ TE TP ++ A +S
Sbjct: 630 AVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683
>gi|46562147|ref|YP_009152.1| type III secretion system protein YscC family [Desulfovibrio
vulgaris str. Hildenborough]
gi|46447684|gb|AAS94350.1| type III secretion system protein, YscC family [Desulfovibrio
vulgaris str. Hildenborough]
Length = 624
Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats.
Identities = 62/413 (15%), Positives = 125/413 (30%), Gaps = 55/413 (13%)
Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV-LHGM-------- 150
D + +A + + S RV + TV L G
Sbjct: 169 YAWAEDITVNSMDKTVTLPGVASILRAMVSGSPSSATRVTQETATVDKLSGTGLISQGRQ 228
Query: 151 ---VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----------------- 190
+QR + S+ + Q + + +N + +
Sbjct: 229 QKESGQSNQAQRGGQASQQDSGGAQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDL 288
Query: 191 -AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSFAADFGGKF 238
+ V + I ++ + + +G + T S+G K G
Sbjct: 289 DRPVELVEIHAAIVDIDTNFKRDLGVTYQATVGKDQRWAGGADVSTGTDKFTPLPVPGVP 348
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G S + F ++ALE+ R L P++ + A+ + + +
Sbjct: 349 QGSGLTLSTIYTMGSDYFLARINALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQV- 407
Query: 299 SSSTGATSVTTHDYGVVLHFTPT--VLSPGRIGLRIQTEVSEPVIGVNA-------GDMP 349
A + + G VL TP G +++ V + +P
Sbjct: 408 -QGYQAVDLFKVEAGTVLRVTPHIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIP 466
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ K +T + +G ++++ G + +G+P+L IP+LG LF+ + E
Sbjct: 467 PIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRME 526
Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
I TP +V+ + +L + + + S G
Sbjct: 527 RLILITPKVVR---LDNLPGTPPRVDDPAFHRTATQSDYAERTPTPPPSRRSG 576
>gi|17426227|ref|NP_510894.1| phage assembly protein [Enterobacteria phage M13]
gi|138050|sp|P03665|G4P_BPM13 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
Short=G4P; Flags: Precursor
gi|14969|emb|CAA23865.1| phage assembly protein [Enterobacteria phage M13]
Length = 426
Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats.
Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 12/237 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
DQ+ ++ I EV++ F + + S GG F G+ +
Sbjct: 195 TDQILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFN 250
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGAT 305
+ AL+ + + L+ P + +SGQ S + G + T +
Sbjct: 251 GDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQ 310
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
++ + G+ + P ++ G I L I ++ A D+ R TTV L G
Sbjct: 311 TIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDG 369
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
T++L GL G+P LSKIP++G LF + + EE+ +++ +V+ +
Sbjct: 370 QTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426
>gi|313891897|ref|ZP_07825499.1| bacterial type II/III secretion system short domain protein
[Dialister microaerophilus UPII 345-E]
gi|313119672|gb|EFR42862.1| bacterial type II/III secretion system short domain protein
[Dialister microaerophilus UPII 345-E]
Length = 405
Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats.
Identities = 62/254 (24%), Positives = 98/254 (38%), Gaps = 15/254 (5%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ T A S + ++ L+I E QV ++ + V R K +G
Sbjct: 133 QVASDVGTNSVIVNATPRAMSELEHIIKALDIP-EKQVKVEAEVLAVNRSYAKDLGIDWQ 191
Query: 219 IT-----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
S +K+ + S+ G F F+ L+AL
Sbjct: 192 FKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAGISYGKSITGNPYTFFFQAKLNALLSDG 251
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSP 325
+ LA+P + ++G++A G + + T TS+ D G+ L +TP V
Sbjct: 252 KAKILAKPNVVTLNGRTAEILIGSKIPVLVEHMENGTKTTSIEYKDAGIKLTYTPNVSKN 311
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
I I EVS P + V R+A TTV L SG + + GL+ + +
Sbjct: 312 SEITADIIAEVSTPYL-VPEMKAYRIVTRQAHTTVRLKSGDMLTIGGLIDKEEANNIRKV 370
Query: 386 PLLSKIPILGALFR 399
P+L IPILG LF+
Sbjct: 371 PVLGDIPILGKLFQ 384
>gi|120586851|ref|YP_961196.1| YscC/HrcC family type III secretion outer membrane protein
[Desulfovibrio vulgaris subsp. vulgaris DP4]
gi|120564265|gb|ABM30008.1| type III secretion outer membrane pore, YscC/HrcC family
[Desulfovibrio vulgaris DP4]
Length = 624
Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats.
Identities = 62/413 (15%), Positives = 125/413 (30%), Gaps = 55/413 (13%)
Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV-LHGM-------- 150
D + +A + + S RV + TV L G
Sbjct: 169 YAWAEDITVNSMDKTVTLPGVASILRAMVSGSPSSATRVTQETATVDKLSGTGLISQGRQ 228
Query: 151 ---VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----------------- 190
+QR + S+ + Q + + +N + +
Sbjct: 229 QKESGQSNQAQRGGQASQQDSGGAQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDL 288
Query: 191 -AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSFAADFGGKF 238
+ V + I ++ + + +G + T S+G K G
Sbjct: 289 DRPVELVEIHAAIVDIDTNFKRDLGVTYQGTVGKDQRWAGGADVSTGTDKFTPLPVPGVP 348
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
G S + F ++ALE+ R L P++ + A+ + + +
Sbjct: 349 QGSGLTLSTIYTMGSDYFLARINALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQV- 407
Query: 299 SSSTGATSVTTHDYGVVLHFTPT--VLSPGRIGLRIQTEVSEPVIGVNA-------GDMP 349
A + + G VL TP G +++ V + +P
Sbjct: 408 -QGYQAVDLFKVEAGTVLRVTPHIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIP 466
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ K +T + +G ++++ G + +G+P+L IP+LG LF+ + E
Sbjct: 467 PIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRME 526
Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
I TP +V+ + +L + + + S G
Sbjct: 527 RLILITPKVVR---LDNLPGTPPRVDDPAFHRTATQSDYAERTPTPPPSRRSG 576
>gi|261257910|ref|ZP_05950443.1| w0022 [Escherichia coli O157:H7 str. FRIK966]
Length = 275
Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats.
Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 7/189 (3%)
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ + + ++ +L AL ++ LA P++ + A+F G + +
Sbjct: 23 NALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSG 82
Query: 299 SSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSY 351
S +T +V G+ L P + + L I+ EVS + + ++
Sbjct: 83 SQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATF 142
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R + + +G T+V+ GLL I+ + +PLL IP+LG LFR + +
Sbjct: 143 NTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAKSEQTAKRNLM 202
Query: 412 IAATPFLVK 420
+ P +++
Sbjct: 203 LFIRPTIIR 211
>gi|78777581|ref|YP_393896.1| type II and III secretion system protein [Sulfurimonas
denitrificans DSM 1251]
gi|78498121|gb|ABB44661.1| type II and III secretion system protein [Sulfurimonas
denitrificans DSM 1251]
Length = 563
Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats.
Identities = 52/285 (18%), Positives = 92/285 (32%), Gaps = 60/285 (21%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------------- 231
QV + V + V K G S + + +F
Sbjct: 239 QVLIDVQLLSVTLSDGKTTGVDWSQLYNLQNMNLTFNKAKRTNVHGATWDSAYEGDTVEG 298
Query: 232 --------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
D G + + F+ ++ L+ + +
Sbjct: 299 LLLRDKRVEAAQSNIETYGLEDLAGVRTPVDATSKLLTISSNFTINNIIKFLKTQGDVSS 358
Query: 272 LAEPTLTAISGQSASFTSGGQHLY-----------KTVSSSTGATSVTTHDYGVVLHFTP 320
++ P + ++ Q A T+G ++ Y S +T + + GV+L TP
Sbjct: 359 ISNPKVLTLNNQPALITAGTEYFYKIISDSLSTAGTGGSVTTQNQDLQSVFAGVLLDITP 418
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLL 374
+ I L+I +SE ++ P R R+ + V L G I+L GL+
Sbjct: 419 EISDDNMITLKINPSLSETTTDISITPGVERTMPPDLRRRQLSSVVTLRDGERIILGGLI 478
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P+L IPIL LF+ + E+ I P +V
Sbjct: 479 NTSNSIDVNKVPILGDIPILNYLFKYENRLKTTQELVIVIEPHIV 523
>gi|163786002|ref|ZP_02180450.1| type II general secretion pathway (GSP) D protein [Flavobacteriales
bacterium ALC-1]
gi|159877862|gb|EDP71918.1| type II general secretion pathway (GSP) D protein [Flavobacteriales
bacterium ALC-1]
Length = 718
Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 83/242 (34%), Gaps = 18/242 (7%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF- 254
+ ++V I E + + G + + S ++ + + G
Sbjct: 476 ILIEVMIVEAQTSNTLEAGVTWGLGTEPATTEGSLFPTTDVTLGAQTINRIISGFSSTSV 535
Query: 255 --------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------- 299
+F + A+E ++ + P L ++G ASF++G Y V
Sbjct: 536 FNFGKVVPNFFATVKAMETNGDLKIKSTPKLATLNGHRASFSNGQTSYYAVVQRNTIGND 595
Query: 300 --SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
+T + D + L P V + L I S + P R
Sbjct: 596 NPQTTEIRNYFPVDAKLGLEIKPYVTGNKEVLLNINVVQSNFGQRIAEDAPPDINSRDFS 655
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
+ V + VL GL ++ G+P L++IP++ LF ++++ + P
Sbjct: 656 SVVRMKDQDIAVLGGLEENYSNNSGSGVPFLARIPLIKWLFSKRVREGRKSKLTVFIKPT 715
Query: 418 LV 419
++
Sbjct: 716 VI 717
>gi|281358092|ref|ZP_06244576.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
gi|281315465|gb|EFA99494.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
Length = 545
Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats.
Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 11/275 (4%)
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
+ L E + A + + +M +++ Q+ ++ I EV Q
Sbjct: 124 ATLVEPLDEQNVLVLSGPSDAVENYRSIMLAMDVPSS-QILIEAKIVEVMFSDGMQRNLS 182
Query: 217 HSITGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
S G + G + G + K + + + + L A + L+ P
Sbjct: 183 ISYAHKGRGSIGATTEVPGQSSQPTTGMGGNWKPIAGKDTLDIAFQWLLTAQDAKVLSSP 242
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQ 333
+ + + +G + + +S+ S++ GV L P++++ + LR+
Sbjct: 243 NILISRNEVSRIVTGEEIPIQEANSTGNTLSLSTKFKSVGVTLEVEPSMINRDNVTLRVY 302
Query: 334 TEVSEP-------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
+VS G + +P R +T + + +++ GL + ++ +P
Sbjct: 303 PKVSNVIRYENVSAGGDTSYPVPVISARSVETYLRMQDKQVVMMGGLYSRNDSLSQQRVP 362
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+LS +P++G LF +E T++ ++ P
Sbjct: 363 ILSDLPLIGELFTGKNLTKEVTQLIFFLKIHIISP 397
>gi|138046|sp|P03666|G4P_BPF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
Short=G4P; Flags: Precursor
gi|14983|emb|CAA23875.1| unnamed protein product [Enterobacteria phage f1]
Length = 426
Score = 146 bits (369), Expect = 7e-33, Method: Composition-based stats.
Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 12/237 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
DQ+ ++ I EV++ F + + S GG F G+ +
Sbjct: 195 TDQILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFN 250
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGAT 305
+ AL+ + + L+ P + +SGQ S + G + T +
Sbjct: 251 GDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQ 310
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
+V + G+ + P ++ G I L I ++ A D+ R TTV L G
Sbjct: 311 TVERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDG 369
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
T++L GL G+P LSKIP++G LF + + EE+ +++ +V+ +
Sbjct: 370 QTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426
>gi|225166011|ref|ZP_03727761.1| Type II secretory pathway component PulD-like protein [Opitutaceae
bacterium TAV2]
gi|224799746|gb|EEG18225.1| Type II secretory pathway component PulD-like protein [Opitutaceae
bacterium TAV2]
Length = 693
Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats.
Identities = 66/396 (16%), Positives = 129/396 (32%), Gaps = 78/396 (19%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + +E +++F S ++ + +V G
Sbjct: 318 NQTVEQFVRDGAPQETGIEQAIKKFFTGSTYMIDYERNIIVATGT--------------- 362
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
+ + + ++ + QV ++ + +Q+G ++
Sbjct: 363 ---------RDQLRTLENIIREFD-RPVQQVLIEARFITISEAAFQQLGLNWETNRPTTS 412
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQ 283
+ V G + + G+ S L A+E++ +TL+ P LT I+ +
Sbjct: 413 ARSATDYTSIATTVGFGLEKTFTGIFGSNSDSLTATLTAIEQSGESQTLSAPRLTVINNR 472
Query: 284 SASFTSGGQHLYKTVSSST-------------GATSVTTHDYGVVLHFTPTVLSPGR-IG 329
A+ G Y + + T GV L ++ GR I
Sbjct: 473 PATIRDGKTQYYYEEYQVSQTILENRSTSSLVPSGKPTKLSAGVSLDVLASIGGDGRSIM 532
Query: 330 LRIQTEVSEPVIGVNAGDM-----------------PSYRVRKADTTVELPSGGTIVLAG 372
L ++ VS+ V V + P R ++ T V + SG T+V+ G
Sbjct: 533 LALKPSVSQDVELVTFATVSDLDSSGRVVSTFDIKLPQSRDQEISTRVIVQSGETVVMGG 592
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
++++ E +P+L IP LGALFR + + I T L+
Sbjct: 593 VIENVQSTFTESVPVLGAIPYLGALFRTKTEVSKPRYLLIFVTATLL------------- 639
Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
+ F R N G +E + ++ +G
Sbjct: 640 -----SETGEFV--RYNNAPGTEETPRTQRRSRRGT 668
>gi|215488986|ref|YP_002331417.1| T3SS structure protein EscC [Escherichia coli O127:H6 str.
E2348/69]
gi|312967940|ref|ZP_07782152.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|54311608|emb|CAG17523.1| EscC protein [Escherichia coli]
gi|215267058|emb|CAS11503.1| T3SS structure protein EscC [Escherichia coli O127:H6 str.
E2348/69]
gi|221361489|emb|CAX18660.1| Type III secretion system, LEE associated [Escherichia coli]
gi|221361550|emb|CAX18740.1| Type III secretion system, LEE associated [Escherichia coli]
gi|312287501|gb|EFR15409.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|320193805|gb|EFW68438.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli WV_060327]
gi|320201526|gb|EFW76105.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli EC4100B]
Length = 512
Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + +
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+F ++AL++ + + L++P++ ++ A K S S+ + G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385
Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
+L TP +L L ++ + +P + + T
Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G +++L G ++D K+GIPLLS IP++G+LF ++ +
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505
Query: 419 VKPVAMR 425
+K +
Sbjct: 506 IKSASSE 512
>gi|15804236|ref|NP_290275.1| hypothetical protein Z5126 [Escherichia coli O157:H7 EDL933]
gi|15833829|ref|NP_312602.1| EscC [Escherichia coli O157:H7 str. Sakai]
gi|168748648|ref|ZP_02773670.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4113]
gi|168753525|ref|ZP_02778532.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4401]
gi|168759822|ref|ZP_02784829.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4501]
gi|168766122|ref|ZP_02791129.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4486]
gi|168772329|ref|ZP_02797336.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4196]
gi|168779857|ref|ZP_02804864.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4076]
gi|168785590|ref|ZP_02810597.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC869]
gi|168798671|ref|ZP_02823678.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC508]
gi|195936258|ref|ZP_03081640.1| EscC [Escherichia coli O157:H7 str. EC4024]
gi|208808738|ref|ZP_03251075.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4206]
gi|208812386|ref|ZP_03253715.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4045]
gi|208819063|ref|ZP_03259383.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4042]
gi|209395836|ref|YP_002273173.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4115]
gi|217325945|ref|ZP_03442029.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. TW14588]
gi|254795650|ref|YP_003080487.1| type III needle complex subunit [Escherichia coli O157:H7 str.
TW14359]
gi|261225794|ref|ZP_05940075.1| type III needle complex subunit [Escherichia coli O157:H7 str.
FRIK2000]
gi|261258839|ref|ZP_05951372.1| type III needle complex subunit [Escherichia coli O157:H7 str.
FRIK966]
gi|291285063|ref|YP_003501881.1| escC [Escherichia coli O55:H7 str. CB9615]
gi|12518466|gb|AAG58839.1|AE005596_9 escC [Escherichia coli O157:H7 str. EDL933]
gi|3414909|gb|AAC31520.1| L0041 [Escherichia coli]
gi|13364050|dbj|BAB37998.1| type III secretion system EscC protein [Escherichia coli O157:H7
str. Sakai]
gi|187771452|gb|EDU35296.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4196]
gi|188016923|gb|EDU55045.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4113]
gi|189002416|gb|EDU71402.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4076]
gi|189358814|gb|EDU77233.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4401]
gi|189364509|gb|EDU82928.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4486]
gi|189369868|gb|EDU88284.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4501]
gi|189374516|gb|EDU92932.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC869]
gi|189378854|gb|EDU97270.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC508]
gi|195957526|gb|ACG59637.1| type III secretion system protein EscC [Escherichia coli O157:H7]
gi|195957585|gb|ACG59695.1| type III secretion system protein EscC [Escherichia coli]
gi|195957642|gb|ACG59751.1| EscC [Escherichia coli]
gi|208728539|gb|EDZ78140.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4206]
gi|208733663|gb|EDZ82350.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4045]
gi|208739186|gb|EDZ86868.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4042]
gi|209157236|gb|ACI34669.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4115]
gi|217322166|gb|EEC30590.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. TW14588]
gi|254595050|gb|ACT74411.1| type III needle complex subunit [Escherichia coli O157:H7 str.
TW14359]
gi|255348323|gb|ACU09465.1| type III secretion outer membrane pore YscC/HrcC family
[Escherichia coli]
gi|290764936|gb|ADD58897.1| escC [Escherichia coli O55:H7 str. CB9615]
gi|320191251|gb|EFW65901.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC1212]
gi|320639365|gb|EFX08980.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. G5101]
gi|320644809|gb|EFX13845.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. 493-89]
gi|320650073|gb|EFX18569.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. H 2687]
gi|320655420|gb|EFX23355.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320661047|gb|EFX28483.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. USDA
5905]
gi|320666172|gb|EFX33178.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. LSU-61]
gi|326337301|gb|EGD61136.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. 1044]
gi|326341675|gb|EGD65464.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. 1125]
Length = 512
Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + +
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+F ++AL++ + + L++P++ ++ A K S S+ + G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385
Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
+L TP +L L ++ + +P + + T
Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G +++L G ++D K+GIPLLS IP++G+LF ++ +
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505
Query: 419 VKPVAMR 425
+K +
Sbjct: 506 IKSASSE 512
>gi|260869693|ref|YP_003236095.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128]
gi|221361432|emb|CAX18585.1| Type III secretion system, LEE associated [Escherichia coli]
gi|257766049|dbj|BAI37544.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128]
gi|323178902|gb|EFZ64478.1| hypothetical protein ECOK1180_2636 [Escherichia coli 1180]
Length = 512
Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + +
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+F ++AL++ + + L++P++ ++ A K S S+ + G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385
Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
+L TP +L L ++ + +P + + T
Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G +++L G ++D K+GIPLLS IP++G+LF ++ +
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505
Query: 419 VKPVAMR 425
+K +
Sbjct: 506 IKSASSE 512
>gi|89897873|ref|YP_514983.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56]
gi|89331245|dbj|BAE80838.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56]
Length = 755
Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats.
Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 5/255 (1%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ V ++V + E + +Q G G S A + + E G
Sbjct: 463 KKMVRIEVLLFERKLSSQRQAGLNLLRLGEEVCKKTSSAVSWTSSGILEFLFKGSTGSSL 522
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
S++ L +R A P++ ++ A + VS+ Y
Sbjct: 523 VPSYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSADKEKAQYNRAQY 581
Query: 313 GVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
G+++ P + G+ + ++T+++ G N + P R V +P G T++
Sbjct: 582 GIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNTNERPDVTRRNITNKVRIPDGETVI 641
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
+ GL ++GIP L +IP +G LF + + +TE+F+ TP ++ P ++
Sbjct: 642 IGGLRCKHASDSQDGIPFLGEIPGIGKLFGMNSTSDSQTEMFVFITPKILDNPAEKKERQ 701
Query: 429 RPDDHYSVEDDAKAF 443
S + F
Sbjct: 702 EEAILSSRPGENAEF 716
>gi|150021613|ref|YP_001306967.1| type II and III secretion system protein [Thermosipho melanesiensis
BI429]
gi|149794134|gb|ABR31582.1| type II and III secretion system protein [Thermosipho melanesiensis
BI429]
Length = 1302
Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats.
Identities = 52/326 (15%), Positives = 113/326 (34%), Gaps = 34/326 (10%)
Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
+L K + + +++ ++ + N V+ + V+ G+ + +
Sbjct: 1004 LLTSEGTKTINTFTFSVPKNVEKIQKLIE--FYGGNSFVDSAAGVVIATGI--DAKIAGE 1059
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA--EVRRDILKQIGFQH 217
E +L+ ++V + E + +G
Sbjct: 1060 IRNYIEKYLNSKLA-----------------------LIEVRVVDEEFTNSLDLTLGELT 1096
Query: 218 SITGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
S G+ S G G ++ + + + LA P
Sbjct: 1097 SNIGNLSKDGFDITLTLGEMSLEKIVEKLLSVGTVNELTLKLNGKINATDKDTKILASPN 1156
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
+ A SG+ AS G + ++ + + GV L TP V + I L + +V
Sbjct: 1157 VVAKSGEKASILIGDKIPIVLTTAENT-QEIKYIESGVTLEITPFVNADNTIDLELNIKV 1215
Query: 337 SEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
S V +P R R+ ++ + L T+++ GL +++ + + +P+L +PI
Sbjct: 1216 SSFDWDVKNVYGLTLPLERTREFNSKISLKENETLIIGGLTREENSKTESKVPILGDLPI 1275
Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
+G F+ + + + I I + +V
Sbjct: 1276 IGKFFKTEKNDLVKRNIIILISAKVV 1301
>gi|217076176|ref|YP_002333892.1| bacterial type II and III secretion system protein [Thermosipho
africanus TCF52B]
gi|217036029|gb|ACJ74551.1| bacterial type II and III secretion system protein [Thermosipho
africanus TCF52B]
Length = 1318
Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats.
Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 9/232 (3%)
Query: 197 TLKVTIA--EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-FSVKGVLDR 253
++V + E+ + +G S G+ S + + + G
Sbjct: 1088 LIEVKVVDEELSDNFEYNLGKITSDLGTLSNDDFNVKLSLSNLSIEGIINKLLSIGSDGN 1147
Query: 254 FSFETVLHALERATAIRT--LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
S + T T LA P + A SG++AS G + ++ + +
Sbjct: 1148 SSLNIEIGNGNNVTNKNTNVLASPNVVAKSGETASILIGDKIPIVLSTAENT-QEIKYIE 1206
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTI 368
GV L TP + + I L + +VS + +P R R+ + + L T+
Sbjct: 1207 SGVTLEITPYINADNTIDLELNIKVSSFDWDLKSQYSLSLPVERTREFSSKILLKENQTL 1266
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
V+ GL +++ + IP+L +PI+G F + + ++ + I I + +VK
Sbjct: 1267 VIGGLSREENSKTVSKIPILGDLPIIGKFFVSEKSDKVKRNIVIFISAKVVK 1318
>gi|148252838|ref|YP_001237423.1| general secretion pathway protein D [Bradyrhizobium sp. BTAi1]
gi|146405011|gb|ABQ33517.1| General secretion pathway protein D [Bradyrhizobium sp. BTAi1]
Length = 751
Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 21/247 (8%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-------V 247
QV + TIAEV G Q ++ G + + S + +
Sbjct: 471 QVGIDATIAEVTLTNELSYGVQAYLSSKVLGLGTDKGSITNTQTTSVATATTAAATSALI 530
Query: 248 KGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
L F+F +L AL T+++ L+ P+L I+ Q+A+ G T S
Sbjct: 531 NRALPGFNFLIGHEASPNMILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGS 590
Query: 300 ------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
S+T ++ + G++L P + + G + L ++ E+S A P+
Sbjct: 591 ATVLSSSNTVVNTIDYRNTGIILRVVPRIAANGNVRLEVEQEISNVAAQSAASLTPTVSQ 650
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
RK + + + +G T++LAGL+ + + GIP +IPILG F + TE+ I
Sbjct: 651 RKVKSAISVANGQTVLLAGLISEQQNGNRNGIPGFDEIPILGDTFSHQDKKGTRTELIIF 710
Query: 414 ATPFLVK 420
P +++
Sbjct: 711 IRPQIIR 717
>gi|262064173|gb|ACY07155.1| IV [Enterobacteria phage f1]
Length = 426
Score = 146 bits (368), Expect = 9e-33, Method: Composition-based stats.
Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 38/355 (10%)
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152
N ++G + + + + I L + + V +D V +
Sbjct: 80 NFDMVGSNPSIIQKYNPNNQDYIDELPSSDNQEYDDNSAPSGGFFV-PQNDNVTQTFKIN 138
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194
++ + E F+ + S NLL ++ D
Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSTPKDILDNLPQFLSTVDLPTD 196
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
Q+ ++ I EV++ F + + S GG F G+ +
Sbjct: 197 QILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307
+ AL+ + + L+ P + +SGQ S + G + T + ++
Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGRNVPFITGRVTGESANVNNPFQTI 312
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ G+ + P ++ G I L I ++ A D+ R TTV L G T
Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
++L GL G+P LSKIP++G LF + + EE+ +++ +V+ +
Sbjct: 372 LLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426
>gi|86130937|ref|ZP_01049536.1| general secretion pathway protein D [Dokdonia donghaensis MED134]
gi|85818348|gb|EAQ39508.1| general secretion pathway protein D [Dokdonia donghaensis MED134]
Length = 728
Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 87/243 (35%), Gaps = 19/243 (7%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--- 252
V ++V I EV ++ G + I S + + + + + +
Sbjct: 485 VIIEVMILEVSKNSTLDAGIEWGIGQEPSVTQGNIFPNTNLSLGASTINRILGRIDGSSF 544
Query: 253 ------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----- 301
+F + A E + P +T ++G A F++G Y+ +
Sbjct: 545 FNIGQVGPNFFATIRASETNGNFNIKSSPRITTLNGHRAYFSNGRTSYYEITQNQFVGVQ 604
Query: 302 ----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
+ + D + L P V G + + I+ S V P R+
Sbjct: 605 NPVVSESVDYVPIDAELSLEVLPFVSEDGEVTMDIKVIQSSFSGERVTENGPPEISSREF 664
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ ++ + +VL GL +D G+P L++IPI+ LF ++++ + P
Sbjct: 665 TSIIKSRTNDIVVLGGLEEDSKNNSGSGVPFLARIPIIKWLFSKRVRTASKSKLTVLIKP 724
Query: 417 FLV 419
++
Sbjct: 725 TVI 727
>gi|323153824|gb|EFZ40066.1| hypothetical protein ECEPECA14_4273 [Escherichia coli EPECa14]
Length = 436
Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 99/247 (40%), Gaps = 23/247 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ + V+I +V + L+Q+G S T ++ S +F + + + S + +
Sbjct: 198 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSS------TAQANLSSSVISNA 251
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+F ++AL++ + + L++P++ ++ A K S S+ + G
Sbjct: 252 NNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 309
Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
+L TP +L L ++ + +P + + T
Sbjct: 310 TLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSILPEVQNSEMTT 369
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G +++L G ++D K+GIPLLS IP++G LF ++ +
Sbjct: 370 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKHSVVRLFLIKATP 429
Query: 419 VKPVAMR 425
+K +
Sbjct: 430 IKSASSE 436
>gi|170700771|ref|ZP_02891764.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
gi|170134335|gb|EDT02670.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
Length = 244
Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 3/194 (1%)
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ AA G F + F++ + L ALE + ++ P + A
Sbjct: 21 NALDLAARPLGGFEAATAGFTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKA 80
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
G + Y+ G + V + L P + GR+ L + +V++ IG
Sbjct: 81 IVEQGSELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPT 137
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
P+ + T VE+ +GGT+ + G+ + + +PLL KIP+LGALFR+
Sbjct: 138 AAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRD 197
Query: 406 EETEIFIAATPFLV 419
+ +E+ + TP +V
Sbjct: 198 QRSELVVFITPTVV 211
>gi|329121951|ref|ZP_08250564.1| type II and III secretion system protein [Dialister micraerophilus
DSM 19965]
gi|327467397|gb|EGF12896.1| type II and III secretion system protein [Dialister micraerophilus
DSM 19965]
Length = 405
Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats.
Identities = 62/254 (24%), Positives = 98/254 (38%), Gaps = 15/254 (5%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ T A S + ++ L+I E QV ++ + V R K +G
Sbjct: 133 QVASDVGTNSVIVNATPRAMSELEHIIKALDIP-EKQVKVEAEVLAVNRSYAKDLGIDWQ 191
Query: 219 IT-----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
S +K+ + S+ G F F+ L+AL
Sbjct: 192 FKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAGISYGKSITGNPYTFFFQAKLNALLSDG 251
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSP 325
+ LA+P + ++G++A G + + T TS+ D G+ L +TP V
Sbjct: 252 KAKILAKPNVVTLNGRTAEILIGSKIPVLVEHMENGTKTTSIEYKDAGIKLTYTPNVSKN 311
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
I I EVS P + V R+A TTV L SG + + GL+ + +
Sbjct: 312 SEITADIIAEVSTPYL-VPEMKAYRIVTRQAHTTVRLKSGDMLTIGGLIDKEEANNIRKV 370
Query: 386 PLLSKIPILGALFR 399
P+L IPILG LF+
Sbjct: 371 PVLGDIPILGKLFQ 384
>gi|261344599|ref|ZP_05972243.1| type III secretion outer membrane pore, YscC/HrcC family
[Providencia rustigianii DSM 4541]
gi|282567513|gb|EFB73048.1| type III secretion outer membrane pore, YscC/HrcC family
[Providencia rustigianii DSM 4541]
Length = 567
Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats.
Identities = 57/381 (14%), Positives = 121/381 (31%), Gaps = 34/381 (8%)
Query: 82 HSPRTMYLFGKN---VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-N 135
+ R+ L G+ G +V+ L G + + + + + +
Sbjct: 197 VTDRSYSLRGQTVTVPGMLSVMSSLFKSGGSTVEETLDIEPARLNSSDDDIDALMDAPIG 256
Query: 136 IRVEMVSDTVVLH--GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
+ VV+ G ++ L G + + V NL N
Sbjct: 257 GSTNTNNRQVVIKRGGGAKSTFSL--VAHPDSNSLIVKGSPEQIRYVRELVKNLDN--RR 312
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV L + I ++ R L +G + +G F+ + D
Sbjct: 313 RQVELSLWIIDITRSELDNLGVNWEVGSFKAGGG--------------AISFNRSTLPDT 358
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
F + AL + + ++ P L A F + K ++ YG
Sbjct: 359 SKFLVQIDALSKNGNSQIVSRPVLLTQENVPALFDNNTSFYAKL--QGERIATLEQVTYG 416
Query: 314 VVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
++ P + + + + + E N +PS +T + ++
Sbjct: 417 TMISVMPRISAGQSVEMEVNIEDGAENRDSSGKTSNVEGLPSVNRTSINTVARIAKNSSL 476
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
++ G ++ + + IPLL IP +G LF ++ N+++ P L+ D
Sbjct: 477 LIGGYTREQYVENESKIPLLGDIPWVGRLFSHTSTNQQKMVRIFLIQPRLLDENEAWDGR 536
Query: 429 RPDDHYSVEDDAKAFFFNRVN 449
+ + + + + + V
Sbjct: 537 QFSESHRI-TEKDSQLHGTVQ 556
>gi|238785761|ref|ZP_04629734.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
[Yersinia bercovieri ATCC 43970]
gi|238713344|gb|EEQ05383.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
[Yersinia bercovieri ATCC 43970]
Length = 504
Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats.
Identities = 58/314 (18%), Positives = 111/314 (35%), Gaps = 30/314 (9%)
Query: 139 EMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
+ V L G+V +++ A + L + S+ N + +
Sbjct: 191 QYRDQQVKLPGLVSVLREMTMANNLPLVGGKGQTNSPISTPLFSADPRQNSIIVRDRQVN 250
Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
Q+ + VTI +V + Q+G S + S G SF + G
Sbjct: 251 MPIYRSLIAQLDQRPIQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSGSGSSG 310
Query: 239 VSEGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ V+ +F L+AL++ + R L++P++ ++ A K
Sbjct: 311 TGKNSADGFSTVIGDTSNFMVRLNALQKNSRARVLSQPSVVTLNNIQAVLDKNVTFYTKL 370
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIG---VNAGDMPSYRV 353
+ + G +L TP ++ G + + + + N+ +P +
Sbjct: 371 --QGDKVAKLESITSGSLLRVTPRMIDADGEKEVLLNLNIQDGQQQAPISNSEPLPEIQN 428
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
T L G +++L G ++D + + IPLL IP+LG LFR++
Sbjct: 429 SDISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFL 488
Query: 414 ATPFLVKPVAMRDL 427
PV +L
Sbjct: 489 IKAV---PVNTGEL 499
>gi|117926538|ref|YP_867155.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
gi|117610294|gb|ABK45749.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
Length = 830
Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats.
Identities = 60/328 (18%), Positives = 117/328 (35%), Gaps = 45/328 (13%)
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L V G+V +I + + T Y S +
Sbjct: 252 LPSAAPGGTASPAKAEPKVTSSGVV-SINQETGVISIFATAADHERIGSYLESLMEN--- 307
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---------SGPSKSFAADFGGK 237
QV ++ T+ EV Q G + S
Sbjct: 308 -----AHRQVLIESTVVEVTLSDDHQQGVDWASINDDGLSRLSAPFFANSIGVNGGSRPM 362
Query: 238 FVSEGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+S+ FS+ ++ + + AL + + L+ P + A++ Q+A ++
Sbjct: 363 ALSDLPVFSLPTSINSGFGKITSTVRALAKFGNTKVLSSPKIMALNNQTAVLKVVDNTVF 422
Query: 296 KTVSSSTG---------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
TV + G T V T G+V+ TP + + + L ++ +S
Sbjct: 423 FTVEAEAGSSANASGGTDTTALINTRVHTVPVGLVMSVTPQISADDVVTLNVRPTISSVS 482
Query: 341 IGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
V+ + +P +V++ ++ + + SG V+ GL++D I ++ G+PL+S+
Sbjct: 483 RWVSDPNPHLNAGVENLIPEIQVKEMESILRVHSGQITVMGGLMQDKISKVDTGLPLISQ 542
Query: 391 IPILGALFRNSRFNREETEIFIAATPFL 418
+P +G LF +TE+ I P +
Sbjct: 543 VPGIGGLFGYKEKTVSKTELVIFMRPVV 570
>gi|83859862|ref|ZP_00953382.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis
alexandrii HTCC2633]
gi|83852221|gb|EAP90075.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis
alexandrii HTCC2633]
Length = 622
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 70/353 (19%), Positives = 129/353 (36%), Gaps = 24/353 (6%)
Query: 85 RTMYLFGKNVGQA-NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
+ +F KN ++I ++ + + + + T +A+ V +
Sbjct: 232 NQILVFAKNEDSLGHLIATARRLEEAAEHEDVTRSYVYQVRNTDAEELANIIRTVLGETG 291
Query: 144 TVVLHGMVRTIQDSQRAV-----ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQV 196
G T ++ A L+ + + LL +V
Sbjct: 292 RSSSTGAETTAGETAGASSAVSSRLAVDTFGNRLIFTGNRNEYDNLARLLGQLDTPVSEV 351
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
++VTIAEV ++G + + + G + ++D
Sbjct: 352 LVEVTIAEVIFSDTTRLGVEFFL------NTLGGDVQVGTSDGLGLSSGGLSAIVDAGQL 405
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL---------YKTVSSSTGATSV 307
+ A + I L+ P + A SG+SA G + S+ SV
Sbjct: 406 DIEAAARSTNSNINVLSTPRIVARSGESAEVQVGTDVPIITSQRAANTQDSGSTDILQSV 465
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGG 366
+ GV+L P V S RI L I EVS A P R+ +++ L G
Sbjct: 466 SYRSTGVLLTVEPRVYSNNRIDLTIMQEVSSADDNPNQAIASPIISNRRMTSSITLQDGQ 525
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
T VL GL+ + + + G+PL+ IP+LG +F+ F+ ++ + + TP+++
Sbjct: 526 TAVLGGLMSETVNRGSTGVPLVQDIPVLGNIFKTETFSNDQRVLLVLVTPYIL 578
>gi|170721649|ref|YP_001749337.1| type II and III secretion system protein [Pseudomonas putida W619]
gi|169759652|gb|ACA72968.1| type II and III secretion system protein [Pseudomonas putida W619]
Length = 625
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 66/458 (14%), Positives = 145/458 (31%), Gaps = 71/458 (15%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P E A + + + + I+ +K + + + V + D
Sbjct: 187 PVTLEFRDAELKVIFEVLSQVAGINFIFDKDLRPDMK---ATIFVREVRIEDAIALLLEQ 243
Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
+ + T+ ++ + + + ++ L D ++ +
Sbjct: 244 NQLRQKIVNDNTLLVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
++ V+ +T+ + ++ +++ ++ + + +
Sbjct: 299 DVFVDERLNTLTMRDTPDAVRMAEKLLQSQDQSNPEVVLEVEVMEVA------------- 345
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
R + +G Q T + + + + + +
Sbjct: 346 ------------RSRILDLGLQWPNTFGVLSDEGNPVS-----VLDQLRGINSGRISISP 388
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308
+ + ++A + I TLA P + + + A G + + SVT
Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365
D G+ L PTV + +++ EVS R A T++ L G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEPTRQGTIPVQVDTRNAQTSLRLHDG 506
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
T VLAGL+++D IP L IP LG LF ++R + ++E+ +A TP +V+ +
Sbjct: 507 ETQVLAGLVRNDKTSSGNKIPGLGDIPGLGRLFGSNRDDMSKSELVLAITPRIVRNLP-- 564
Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
Y D + + G
Sbjct: 565 --------YQSPSDMEFATGTESSMQVRQLALPLPAGA 594
>gi|330969113|gb|EGH69179.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. aceris str. M302273PT]
Length = 700
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 51/288 (17%), Positives = 97/288 (33%), Gaps = 17/288 (5%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQ-RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
+V G R+ + R + +K++ L+++ +
Sbjct: 262 QVLHYGGGSKSAGKSRSGGRANIRVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNL 320
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ + I ++ R+ L ++ + + S GG + + G S + +
Sbjct: 321 IEIDAVILDIDRNELAELSSRWNFNAGSVN---------GGANMFDAGTSSTLFIQNAGK 371
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
F LHALE + + P++ + Q A S ++ G
Sbjct: 372 FAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTS 429
Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
L TP L ++ L + E + I PS R T + G++V+ G
Sbjct: 430 LQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGG 489
Query: 373 LLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
+ +PLL IP +G LF++ + E TP L+
Sbjct: 490 FHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSQRERLFILTPRLI 537
>gi|170698575|ref|ZP_02889644.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
gi|170136509|gb|EDT04768.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
Length = 783
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 85/426 (19%), Positives = 158/426 (37%), Gaps = 44/426 (10%)
Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
+ + + + P E I + + +S L+K I P V
Sbjct: 183 ATMVLPALNQSLQKPVTLELKDVDIRSVLSILTQTSGVSFVLDKDI---SPDLRATVYAR 239
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD--ILIERDIAH-----LEM 125
D + D + +T L K + +++ ++ D ++ + ++
Sbjct: 240 DTSVIDALNLILQTSQLERKVLNDTTMLIYPSTEEKKKRYDDLVVRSYYLNSADPQKVQD 299
Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
LR +A ++ V+ +V+ T V L +
Sbjct: 300 MLRTIVAPKSMYVDGRLKMLVVR---DTETVQDTIVRL---------------------L 335
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
NL +IA + V L V + EV L +G Q + S+ + A + +
Sbjct: 336 NLYDIASPE-VILDVEVLEVNSSDLLNLGIQFPDSVSARMVGPAGVAGSMTIGDLKHLNR 394
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
+ VL+ + + + RTLA P + ++ + AS G + T + + +
Sbjct: 395 DSFPLSFPDPL-AVLNLRQTSGSTRTLANPRIRVVNHEKASVLIGDKVPVITSTVNQTSN 453
Query: 306 SVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKAD 357
++T D G+ L P + + +++ EVS V R A+
Sbjct: 454 AITESVNYLDVGLKLEVEPEIHVDNDVTMKVALEVSNIVKEVRSSATGLLAYQIGTRNAN 513
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T + L G T LAGL+K+D Q+ +P L +IP+LG LF N+R +EI + TP
Sbjct: 514 TVLRLHEGETQALAGLIKNDTQESGTHVPGLGRIPVLGRLFSNNRDTATRSEIVLLITPH 573
Query: 418 LVKPVA 423
+ + +A
Sbjct: 574 IARSLA 579
>gi|6016255|sp|Q01723|HRPH_PSESY RecName: Full=Hypersensitivity response secretion protein hrpH;
Flags: Precursor
gi|2934881|gb|AAC05014.1| envelope protein [Pseudomonas syringae]
gi|148746178|gb|AAB05085.2| HrcC [Pseudomonas syringae pv. syringae]
Length = 701
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 16/265 (6%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R + +K++ L+++ + + + I ++ R+ L ++ + +
Sbjct: 286 RVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 344
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
S GG + + G S + + F LHALE + + P++
Sbjct: 345 FNAGSVN---------GGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSIL 395
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A S ++ G L TP L ++ L + E
Sbjct: 396 TLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIE 453
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ I PS R T + G++V+ G + +PLL IP +G
Sbjct: 454 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIG 513
Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
LF++ + E TP L+
Sbjct: 514 KLLFQSRSRELSQRERLFILTPRLI 538
>gi|225874165|ref|YP_002755624.1| transporter, outer bacterial membrane secretin (Secretin) family
[Acidobacterium capsulatum ATCC 51196]
gi|225794395|gb|ACO34485.1| transporter, outer bacterial membrane secretin (Secretin) family
[Acidobacterium capsulatum ATCC 51196]
Length = 583
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 76/488 (15%), Positives = 150/488 (30%), Gaps = 76/488 (15%)
Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK----VIILQVPVDVQD 68
+ S + P+ ++ + K I + + K ++
Sbjct: 137 ASTAPSGSAENMPESPVDLDIPVAGPVTLHMLADSKVIYLTIGKLLGINVLFDPSSSSNR 196
Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQ-----ANVILIGHDG-------------KQML 110
+ V + + GK G + + +
Sbjct: 197 IQVDLSNVTPYQALN-----IVGKVSGTFWQPVTHNTIFVAQNTPAKRKEYSNQALEVFY 251
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
++ D ++ LR + I +DT+V+ G + L++ ++
Sbjct: 252 VGNVSQASDFTGIQTALRNVFQSARIFGIESNDTIVMLGTPDE-------LRLAKMLIAS 304
Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
+ +V + VT+ EV RD +++IG S S +
Sbjct: 305 LDEP------------------KPEVLVDVTVMEVSRDKMREIGL-------SPPTSLTV 339
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ G + + + L + + L P L A++G+ AS G
Sbjct: 340 NSGSSQTLEQIGHTSAYSITIG----QAAADFLLTDSNTQILQNPRLRALNGEQASLKLG 395
Query: 291 GQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
+ T S + T D GV + TP + + L++ +VS
Sbjct: 396 ERLPVATGSYTYATGSTSAAAETQFQYLDVGVNIDMTPQIHLDHTVTLKLGVDVSSENGT 455
Query: 343 VN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ + P KA V L +G + +LAGLLK ++ Q G P +IP + LF
Sbjct: 456 EDLEGVEEPIISQEKAQQIVRLKNGESTILAGLLKKEVSQTVSGWPGFGEIPFMKYLFTT 515
Query: 401 SRFNREETEIFIAATPFLVKP--VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
+ E+ TP +++ V + D + + ++N K +
Sbjct: 516 QKHEVTSDELVFMITPHIIRSPQVDPLTMREIDTGTADMIQLRE-PPGQLNSSLAAKPKA 574
Query: 459 EVEGQNYK 466
Sbjct: 575 ASSQAASH 582
>gi|227114189|ref|ZP_03827845.1| type III secretion protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 689
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 62/435 (14%), Positives = 131/435 (30%), Gaps = 57/435 (13%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99
G I + N + + + V++ A V + + + + G A +
Sbjct: 169 TGPQAYIDLIRNFSQQREKQDERRKVMIFPLRYASVSDRTLQYRDQKVTI----PGVATI 224
Query: 100 I--LIGHDGKQML----NLDILIERDIAHLEMTLRRFI--------ADSNIRVEMVSDTV 145
+ L+ + + + + + + R + N V
Sbjct: 225 LNELMDGQRAAPAGASGPMPVQPDNGMEAMRESTRSLMTRLATRNNPGRNGEAS---GRV 281
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L G + ++ + +++++ +++ V + I +V
Sbjct: 282 TLSGKISAD---------VRNNALLIRDDEKRRAEYQQLVDHIDVPQNL-VNIDAIILDV 331
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
R L ++ + + FVS D F + ALE
Sbjct: 332 DRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADIQALEG 380
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+A P++ + Q A + G L TP V+
Sbjct: 381 EGTASIVANPSVLTLENQPAIVDFSRTAFITAT--GERVADIQPVTAGTSLQVTPRVIGE 438
Query: 326 G-RIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKE 383
G + +++ ++ + + S R T + +VL G ++
Sbjct: 439 GAQRSIQLVIDIEDGQVETGREGEASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDR 498
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
IP+L IP+LG LF ++R E TP LV D + P + S + +
Sbjct: 499 RIPILGDIPLLGQLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSANRQQ-- 551
Query: 444 FFNRVNKIYGPKEAS 458
+N++ +
Sbjct: 552 LNGAMNRVAQRNGKT 566
>gi|163757297|ref|ZP_02164392.1| type II general secretion pathway (GSP) D protein [Kordia algicida
OT-1]
gi|161322754|gb|EDP94108.1| type II general secretion pathway (GSP) D protein [Kordia algicida
OT-1]
Length = 721
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 90/242 (37%), Gaps = 18/242 (7%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
V ++V + +V + + + G I + S S + + + G S
Sbjct: 479 VLIEVMLIDVSKLSVVETGISWGIGDEPTQTSGSLFPTTNLTLGANTVNRVIGGFDGFGS 538
Query: 256 FE---------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---------KT 297
F + A+E+ I+ + P ++ ++G A+ ++G Y
Sbjct: 539 FNLGKVVPEFFANISAMEQDGDIKIRSTPKISTLNGHRATLSNGTTSYYAVTQRNIYGTN 598
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
++ T+ D + + P V G++ L I S ++ P R+
Sbjct: 599 NPQTSEITNYYPIDAELGISIKPIVSGDGQVTLDIFVIQSTFGSRISEDAPPDISSREFR 658
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
+ + + VL G+ + + G+P L++IP++ F + ++++ + P
Sbjct: 659 SIIRMRDQDIAVLGGIEEKQKRDEGNGVPFLARIPVIKWFFSKRKRQDSKSKLTVLIKPT 718
Query: 418 LV 419
++
Sbjct: 719 VI 720
>gi|9630770|ref|NP_047372.1| putative maturation protein [Vibrio phage fs2]
gi|3702216|dbj|BAA33484.1| unnamed protein product [Vibrio phage fs2]
Length = 500
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 76/397 (19%), Positives = 143/397 (36%), Gaps = 25/397 (6%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD-PTKADVVVHSPR 85
E++ I + I + L + ++ V D++ ++ P D V
Sbjct: 65 AAPFESSDTPIAEFASWYSQQTGIKVVLGQGVLGSVSFTAPDLVPAEYPAFFD-SVLRAH 123
Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
YL G A VI I + K+++ I+ ++ + + S ++
Sbjct: 124 GYYLV--KDGNAYVIKIAPEAKEVITPAIVKLYRFNYIRNSKLSDLVQSTLKATS----- 176
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
V+ Q +VE+ + V+ + Q+ ++ I E
Sbjct: 177 --SEFVKDKQVDNYSVEILPNTNALIVSGTAQQLEKLDVLLSAIDVPQRQIFIEAVITET 234
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
++G A F V+ + + F ++ A+
Sbjct: 235 ELGDNSELGVNLQAAFDK--------AGFVTNLVNASKLKDNLFIFESGDFNALVKAISG 286
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPT 321
++ R L+ P + + + T G + +S+T + D GV L TP
Sbjct: 287 SSDTRLLSRPNILIMDRERGYITVGQNVPFLVSNSTTDGGTSVQRIERKDVGVSLEVTPH 346
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
V+ I L I E S A D+ R TTV + SG TIVL GL+ D+ + +
Sbjct: 347 VMGDDVI-LVINQESSSVTDSTIAADI-ITNKRTLMTTVAVKSGQTIVLGGLISDEKRNV 404
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ G+P+L P++G LFR++ + E+ + +
Sbjct: 405 ESGVPVLKDTPLIGGLFRSTSTKNVQKELRVVIKSTV 441
>gi|30249573|ref|NP_841643.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas
europaea ATCC 19718]
gi|30138936|emb|CAD85515.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas
europaea ATCC 19718]
Length = 763
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 84/422 (19%), Positives = 145/422 (34%), Gaps = 59/422 (13%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P E + I + I+ ++ + + V D + DV
Sbjct: 186 PITMEFRDTSLKTMFELISRTAGINFVFDRNVQ---QEATASIFVRDNSIEDVLKLMLLT 242
Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
V + T+ ++ + + ++ + D+ + +R +
Sbjct: 243 NQLAYKVLNSNTLLIYPDTPAK-----QKDYQELVVRSFHVANTDVKQMVAMIRGLVKAR 297
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
+I V + V+ + + L E ++ +
Sbjct: 298 DIYVNEKLNLFVIRDTL-------EMIRLVERLVAINDFPDPE----------------- 333
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLDR 253
V L V + EV+RD +G + + S P A V + G
Sbjct: 334 -VMLDVVVLEVKRDSTLDLGPNMPTSVTFSAVPGIGTPAQAAADSVVKMSMIKNTGFEGL 392
Query: 254 FSFE----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306
SF + T LA P + S + A G + TV+++ A S
Sbjct: 393 RSFTISNQARIDFGRTLTNADVLANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAAS 452
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTV 360
T D G+ P V + + L+ EVS G NA R A+T +
Sbjct: 453 ATYIDVGLKFEVEPVVRTNNEVTLKALLEVSSNLGEKRSGSGENAATAIVIGTRTAETVL 512
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
EL G T VLAGL++DD+ +++ GI L+ IP+LG +F +TEI + TP +V+
Sbjct: 513 ELRDGETQVLAGLIQDDLSRVRSGIAGLTDIPVLGDIFSKQVRKHNKTEIILLITPHIVR 572
Query: 421 PV 422
V
Sbjct: 573 NV 574
>gi|66044451|ref|YP_234292.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. syringae B728a]
gi|63255158|gb|AAY36254.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. syringae B728a]
Length = 700
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 16/265 (6%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R + +K++ L+++ + + + I ++ R+ L ++ + +
Sbjct: 285 RVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 343
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
S GG + + G S + + F LHALE + + P++
Sbjct: 344 FNAGSVN---------GGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSIL 394
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A S ++ G L TP L ++ L + E
Sbjct: 395 TLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIE 452
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ I PS R T + G++V+ G + +PLL IP +G
Sbjct: 453 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIG 512
Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
LF++ + E TP L+
Sbjct: 513 KLLFQSRSRELSQRERLFILTPRLI 537
>gi|319786555|ref|YP_004146030.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis
11-1]
gi|317465067|gb|ADV26799.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis
11-1]
Length = 711
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 55/291 (18%), Positives = 105/291 (36%), Gaps = 44/291 (15%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + ++V+ L++ +QV ++ + E+ D +++G Q + G
Sbjct: 348 ADPDTQRTLQEVIRQLDVR-REQVLVEALVVEISDDAARKLGTQLLLAGKDGTVPAGMTQ 406
Query: 233 DFGGKFVSEGGDFSVKGVLDRFS------------------------------------- 255
V R
Sbjct: 407 FGNAGPGMAALAGGVLASRGRGGDDDDDGAADAIREAAAQSLLGLSGGLLGIGGQSKDRL 466
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTH 310
F +++A+ L+ P++ + + A G + T +++ ++
Sbjct: 467 FGIIINAVRSDARSNVLSTPSILTLDNEEAHILVGEEVPVTTGEVLSNNNNNPFRTIDRQ 526
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIV 369
D GV L P + S G I L I+ EVS V+ + D R+ +T V + G I
Sbjct: 527 DVGVRLTVRPQINSGGGITLAIRQEVSSVSGTVSRSSDELVLNKREIETNVVVDDGAMIA 586
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L GLL ++ +PLL IP+LGALFR++ + T + + P +++
Sbjct: 587 LGGLLDHTSSDRRDKVPLLGDIPVLGALFRSTSRSSTRTNLMVFLRPTVIR 637
>gi|323957549|gb|EGB53264.1| general secretion pathway protein D [Escherichia coli H263]
Length = 615
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 57/300 (19%), Positives = 104/300 (34%), Gaps = 44/300 (14%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + S + + D
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612
>gi|299139665|ref|ZP_07032838.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX8]
gi|298598289|gb|EFI54454.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX8]
Length = 838
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 71/415 (17%), Positives = 136/415 (32%), Gaps = 52/415 (12%)
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-LIERDIAHLEMTLRRFI-ADSNI 136
+P T+ + + + Q+ L + D + + LR + I
Sbjct: 263 YKPLTPNTILV--AQNSRTKRTDLDQLACQIFYLTSPDQQNDANEILIALRNMLDPAIKI 320
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ D +VL G + + K++N L+ + +V
Sbjct: 321 YLVSTQDAIVLRGTPDELMLA------------------------GKLINDLD-REKPEV 355
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKFVSEGGD 244
+ V + EV +D + +G + S ++ + + + F
Sbjct: 356 VIDVAVMEVDKDKTRTLGITLPQSFSLTPQASSSNNNNAANNNSNSGSQSSSSFTLNTLA 415
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG- 303
+ ++AL + T R L P L A GQ A+ G + + S S+
Sbjct: 416 NTNATNFAVTVTGGTVNALLQDTNTRILQNPRLRATDGQKATLKIGQRVPIASGSLSSPV 475
Query: 304 --------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRV 353
T T D G + TP V S G + L+++ EVS+ ++ P
Sbjct: 476 GGVSSLGVQTQFTYVDVGTNMDITPAVHSDGSVSLKMKVEVSQVDTYDTISGVQEPVIGQ 535
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
+ + T++L G +LAGL+ G P L ++P+L LF + EI
Sbjct: 536 KVLEQTIKLRDGEPSILAGLVTKQDSVAGSGTPGLGELPVLKYLFGTQTKTLQNDEIVFL 595
Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
P +++ ++ L+ + + + A G
Sbjct: 596 LVPHIIRETLLQKLNLRAIDTGTANVVELRRLSTGEDSSAFAPAVRKPADRDVGP 650
>gi|238787451|ref|ZP_04631249.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
[Yersinia frederiksenii ATCC 33641]
gi|238724238|gb|EEQ15880.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
[Yersinia frederiksenii ATCC 33641]
Length = 481
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 10/228 (4%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
Q+ + VTI +V + Q+G S + S G SF + D +
Sbjct: 252 RPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSGN----AKSNADGFSTVIG 307
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
D +F L+AL++ + R L+ P++ ++ A K + +
Sbjct: 308 DTGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL--QGDKVAKLESVT 365
Query: 312 YGVVLHFTPTVLSPGRIG-LRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGT 367
G +L TP +++ + + + + + ++ +P + T L G +
Sbjct: 366 SGSLLRVTPRMINSDGVKEVMLNLNIQDGQQQAPISSSEPLPEIQNSDISTQATLRVGQS 425
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
++L G ++D + + IPLL IP+LG LFR++
Sbjct: 426 LLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTEKQSHSVVRLFLIK 473
>gi|193070395|ref|ZP_03051337.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli E110019]
gi|192956334|gb|EDV86795.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli E110019]
Length = 512
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + +
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+F ++AL++ + + L++P++ ++ A K S S+ + G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385
Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
+L TP +L L ++ + +P + + T
Sbjct: 386 TLLRVTPRILDGSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G +++L G ++D K+GIPLLS IP++G+LF ++ +
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505
Query: 419 VKPVAMR 425
+K +
Sbjct: 506 IKSASSE 512
>gi|304415496|ref|ZP_07396135.1| type III outer membrane secretin precursor [Candidatus Regiella
insecticola LSR1]
gi|304282655|gb|EFL91179.1| type III outer membrane secretin precursor [Candidatus Regiella
insecticola LSR1]
Length = 493
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 56/305 (18%), Positives = 116/305 (38%), Gaps = 21/305 (6%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR--TIQDSQRAVELSETFLSQSGRN 174
E + L LR A + + V + + + + + Q AV + +
Sbjct: 196 EVQLPGLVTVLREMSAGNTLPVNTANGGKIENTSLPLFSADPRQNAVVVRDR-------- 247
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
Q K ++N L++ + + VTI +V + Q+G + + S +G SF +
Sbjct: 248 QANMPIYKSLINQLDLRPIG-IEISVTIIDVDAGNINQLGIDWTSSTSLAGNKVSFRSGL 306
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
+ D + D +F L AL++ + R L+ P++ ++ A
Sbjct: 307 ----IPGSNDSFSSVIGDTDNFMVRLKALQQNSRARVLSRPSVVTLNNIPAVLDKNITFY 362
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTV-LSPGRIGLRIQTEVSEPVIGVNAGD---MPS 350
K + + G +L TP + GR + + + + V + +P
Sbjct: 363 TKL--QGDKVAKLESITSGSLLRVTPRMINDNGRHEVLLNLNIKDGVQKSSNNATEPLPQ 420
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ + T L G +++L G ++D + ++ +P L IP++G LFR++ +
Sbjct: 421 VQDSQISTQATLKIGQSLLLGGFIQDRQSEAEKKVPFLGDIPVIGELFRSTDKHSHSVVR 480
Query: 411 FIAAT 415
Sbjct: 481 LFLIK 485
>gi|257454916|ref|ZP_05620164.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60]
gi|257447626|gb|EEV22621.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60]
Length = 776
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 55/293 (18%), Positives = 104/293 (35%), Gaps = 42/293 (14%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ T S+ + +++ ++IA + QV ++ I K++G + I
Sbjct: 482 ARTNTLIVKDTAETISNIRDLISKIDIAVK-QVMIEARIVSATDTFSKELGVKWGILSQG 540
Query: 224 SGPSKSFAADFG-------------------------------------GKFVSEGGDFS 246
+ +++ G + G
Sbjct: 541 AASNRNLLVGGNLSTIDSLKTYTTATNSDGTTYPVYSGITAANNLSVNLGATNAAGSIAF 600
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ + L A++ ++ P + Q+A SG Q Y+ S++GATS
Sbjct: 601 GLLSISDLLLDLELSAMQADNKGEVISSPKVLTADKQTARIMSGTQIPYQEA-SASGATS 659
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
+ + + L TP + GRIG+ + E P I + T V + G
Sbjct: 660 TSFVEAALSLEVTPNITPEGRIGMDLSIENGSPTI---VNGATAISKDSIKTNVVVDDGQ 716
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
T+VL G+ K+ + IP L +P + F+ + + + E+ I TP LV
Sbjct: 717 TVVLGGVFKNTLGNDVTKIPFLGDLPYVDRFFKRTSKSNNKQELLIFVTPKLV 769
>gi|330815113|ref|YP_004358818.1| secretion type II protein gspD [Burkholderia gladioli BSR3]
gi|327367506|gb|AEA58862.1| secretion type II protein gspD [Burkholderia gladioli BSR3]
Length = 847
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 66/391 (16%), Positives = 143/391 (36%), Gaps = 40/391 (10%)
Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
DV T++L + ++ +G LD + L+ + +
Sbjct: 228 DVKTDQRTTIFLKNSTIDATVRYVLATNGLAQQVLDENTVLIYPNTPAKLKDYQELAVRT 287
Query: 138 VEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ + + + ++TI + V + + A ++++++L ++ + V
Sbjct: 288 FFLSNTEAKTIANTLKTILKVRDVVADEKLNMVIVRDTPDAIRMAERLVSLEDVPEPE-V 346
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------- 246
L+V + EV+R+ +G + + + +
Sbjct: 347 MLEVEVLEVQRNNELNLGVAWPGSVNVTPLPLGSVIAPVTGQNTNTNTPYYPYGYGGGFG 406
Query: 247 ----------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ S + ++A + + ++ L P + + +
Sbjct: 407 GGFGGGSNGTSPALTMNDLLHQTVRTIGLSSLQATVNANVQDSTVKLLTNPRIRVRNHEK 466
Query: 285 ASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
A G + T ++++ + SV D G+ L+ PTV +G+++ EVS
Sbjct: 467 AKILIGERVPNFTSTATSTGFLSQSVNYLDIGLTLNVEPTVYLDDTVGIKLALEVSSLGN 526
Query: 342 GVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
+ R A T ++L +G T VLAGL+ ++ + +P L ++P+LG LF
Sbjct: 527 TITTTTGTAAYQIGTRTASTVLQLKNGETDVLAGLIDNEERTSGNKLPGLGQLPVLGRLF 586
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
+ + TEI +A TP LV+ + D
Sbjct: 587 GATDDQAKNTEIVLAITPHLVRNIRRPDADL 617
>gi|254000203|ref|YP_003052266.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4]
gi|253986882|gb|ACT51739.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4]
Length = 714
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 54/283 (19%), Positives = 103/283 (36%), Gaps = 48/283 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
++++N +I + QV ++ + K +G + +T S+ G +
Sbjct: 430 QQIINKTDIPVK-QVMIESRLVIADEKFGKSLGARFGMTQQSADGRNVIGGTLGNRITEV 488
Query: 242 GGDFSVKGVLDRFSFETVL---------------------HA------------------ 262
D ++ + +T +A
Sbjct: 489 SSDGTITQGTHNGTIQTATTGSTATSSDGEPDLMSNLPVSNAYGNLAFTLLRLPAGLLLN 548
Query: 263 -----LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
LE + ++ P +T + + A G + Y SS+GATSV D + L
Sbjct: 549 LELSALETDKRGKVVSSPRVTTANQKKAQIQQGTKIPYLRA-SSSGATSVQFVDATLSLE 607
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
TP V +I + + + + +G +PS + DT V + +G T VL G+ +
Sbjct: 608 VTPQVTPDDKIIMDLT--IKKDRVGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQT 665
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + +P IP LG F+ ++TE+ I TP ++
Sbjct: 666 ERNDVDKVPFFGDIPFLGNAFKRRVKQNDKTELLIFITPKIMD 708
>gi|156973989|ref|YP_001444896.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116]
gi|156525583|gb|ABU70669.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116]
Length = 623
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/308 (19%), Positives = 111/308 (36%), Gaps = 37/308 (12%)
Query: 146 VLHGMVRTIQDSQRAVE-----LSETFLSQSGRNQYANSSSKKVMNLLNIAGED------ 194
VL G V+T + + E + T + A+ ++ +N + +
Sbjct: 222 VLSG-VQTQIKATKESEETDINTAATTTKNVSVHGGASVEAEPGLNAIIVRDTQARLPLY 280
Query: 195 ----------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFV 239
Q ++V +I ++ + L Q+G S G G V
Sbjct: 281 RKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSILDIKTTGDVDGGDV 340
Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ G + K +LD + + LE + + ++ PTL A + K
Sbjct: 341 TLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYIK 400
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSY 351
+ T A + YG +L P ++ I L + E + D+PS
Sbjct: 401 LIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSI 458
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T
Sbjct: 459 RKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRM 518
Query: 412 IAATPFLV 419
P +V
Sbjct: 519 FIIEPRIV 526
>gi|188532685|ref|YP_001906482.1| HrcC protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
gi|188027727|emb|CAO95580.1| HrcC protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
Length = 676
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 71/472 (15%), Positives = 139/472 (29%), Gaps = 40/472 (8%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73
L + + + V+ + G + + + + D + V+
Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELIKRFSEQREKKEDRRKVMTFPL 183
Query: 74 --PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT--LRR 129
+ AD + + G A ++ +GK+ A T + +
Sbjct: 184 RYASVADRTIRYRDQTVVI---PGVATMLNELMNGKRPAPASASGSDGTAGAPDTGSMMQ 240
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
R+ + T G + D + +S + + + + + L+
Sbjct: 241 NTQSLLSRLSSRNKTPGRAGDRDSGID-DLSGRISADVRNNALLIRDDDKRRDEYSQLIG 299
Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
Q V + I ++ R L ++ T S + G FVS
Sbjct: 300 KIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS------- 352
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
D F + ALE +A P++ + Q A +
Sbjct: 353 ----DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 406
Query: 308 TTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365
G L TP + G +++ ++ + + N + R T +
Sbjct: 407 QPVTAGTSLQVTPRAVGYEGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALIGEN 466
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+VL G ++ IPLL IP +G LF ++R + + TP L+
Sbjct: 467 RALVLGGFHVEESGDRDRRIPLLGDIPWIGKLFTSTRHEISQRQRLFILTPRLIGDQTDP 526
Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIGF 471
D+ DA RV + + E + + + GF
Sbjct: 527 TRYVTADNRQQLSDA----MGRVERRHSNVNQHDVVENALRDLAEGQSPAGF 574
>gi|330975856|gb|EGH75922.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. aptata str. DSM 50252]
Length = 702
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 16/265 (6%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R + +K++ L+++ + + + I ++ R+ L ++ + +
Sbjct: 287 RVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 345
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
S + + G S + + F LHALE + + P++
Sbjct: 346 FNAGSVNGGANMF---------DAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSIL 396
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A S ++ G L TP L ++ L + E
Sbjct: 397 TLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIE 454
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ I PS R T + G++V+ G + +PLL IP +G
Sbjct: 455 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVG 514
Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
LF++ + E TP L+
Sbjct: 515 KLLFQSRSRELSQRERLFILTPRLI 539
>gi|153832481|ref|ZP_01985148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
harveyi HY01]
gi|148871276|gb|EDL70148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
harveyi HY01]
Length = 623
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/308 (19%), Positives = 112/308 (36%), Gaps = 37/308 (12%)
Query: 146 VLHGMVRTIQDSQRAVE-----LSETFLSQSGRNQYANSSSKKVMNLLNIAGED------ 194
VL G V+T + + E + T + A+ ++ +N + +
Sbjct: 222 VLSG-VQTQIKATKESEETDINAAATTTKNVSVHGGASVEAEPGLNAIIVRDTQARLPLY 280
Query: 195 ----------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFV 239
Q ++V +I ++ + L Q+G + S G G V
Sbjct: 281 RKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGIEVANNSILDIKTTGDVDGGDV 340
Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ G + K +LD + + LE + + ++ PTL A + K
Sbjct: 341 TLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVK 400
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSY 351
+ T A + YG +L P ++ I L + E + D+PS
Sbjct: 401 LIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSI 458
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T
Sbjct: 459 RKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRM 518
Query: 412 IAATPFLV 419
P +V
Sbjct: 519 FIIEPRIV 526
>gi|255349063|ref|ZP_05381070.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis 70]
gi|255503601|ref|ZP_05381991.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis 70s]
gi|255507281|ref|ZP_05382920.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis D(s)2923]
gi|296439006|gb|ADH21159.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis E/11023]
Length = 921
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q + G G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626
Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
+ +++ G G++
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686
Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
+ +L AL++ + P + A Q ASF G ++T
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + ++ D GV L T T+ + L+I+ +SE P A T
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 866 SSFEEGTALSNTEGYR 881
>gi|15605407|ref|NP_220193.1| Yop proteins translocation protein C/general secretion pathway
protein [Chlamydia trachomatis D/UW-3/CX]
gi|3329125|gb|AAC68269.1| probable Yop proteins translocation protein C/general secretion
pathway protein [Chlamydia trachomatis D/UW-3/CX]
gi|297748805|gb|ADI51351.1| General secretion pathway protein D [Chlamydia trachomatis D-EC]
gi|297749685|gb|ADI52363.1| General secretion pathway protein D [Chlamydia trachomatis D-LC]
Length = 921
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q + G G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626
Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
+ +++ G G++
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686
Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
+ +L AL++ + P + A Q ASF G ++T
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + ++ D GV L T T+ + L+I+ +SE P A T
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 866 SSFEEGTALSNTEGYR 881
>gi|255311500|ref|ZP_05354070.1| Yop proteins translocation protein C/general secretion pathway
protein [Chlamydia trachomatis 6276]
gi|255317802|ref|ZP_05359048.1| Yop proteins translocation protein C/general secretion pathway
protein [Chlamydia trachomatis 6276s]
Length = 921
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q + G G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626
Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
+ +++ G G++
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686
Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
+ +L AL++ + P + A Q ASF G ++T
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + ++ D GV L T T+ + L+I+ +SE P A T
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 866 SSFEEGTALSNTEGYR 881
>gi|149178109|ref|ZP_01856704.1| general secretion pathway protein D (Precursor) [Planctomyces maris
DSM 8797]
gi|148843029|gb|EDL57397.1| general secretion pathway protein D (Precursor) [Planctomyces maris
DSM 8797]
Length = 1307
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/390 (15%), Positives = 133/390 (34%), Gaps = 41/390 (10%)
Query: 57 VIILQVPVDVQDVLVS-DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
+ + +D Q L++ DP R + + + + + +++
Sbjct: 841 SVAINEFLDTQRALIAQDPDLISSFELLEREVIVVPEAI----------NNNLIISATPR 890
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
I++L L + I+ +++ + + + L ++ L
Sbjct: 891 YFEQISNLVKQLDKEAPQVIIQA------LIVEVELDNDDEFGVELGLQDSLLFNRSIID 944
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIA--EVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
+ + + N+ +Q TI E L +++ + + A
Sbjct: 945 NVLTVQQTITGQNNVTQTNQ-----TIVSQEATPGFLFNSINPLGTNNTNNVSNTAGQAL 999
Query: 234 FGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
D G++ S ++ AL + L+ P + + +A G
Sbjct: 1000 SNFSLQRGNSDLGFGGLVLSASSESVSILIRALAAKRNVHVLSRPQIRTVDNVTAQIQVG 1059
Query: 291 GQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------- 338
S + + + G++L TP + G I + Q E S+
Sbjct: 1060 QIVPVVNGVSVTAVGSANPVIQQSEAGIILTVTPRISPDGNIVMETQAEKSDFNGSSVPI 1119
Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
N + P + + TTV +P+G T+VL G++ + ++ +P L IP++G
Sbjct: 1120 FTDATTGNVVESPIKNITQVQTTVSVPNGQTVVLGGMITESDTTIERKVPWLGDIPLIGI 1179
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426
FR + E+ + TP +++ A +
Sbjct: 1180 PFRYDYSSTRRKELLVFLTPRIIRNDADSE 1209
>gi|289679098|ref|ZP_06499988.1| general secretion pathway protein D [Pseudomonas syringae pv.
syringae FF5]
Length = 221
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 11/208 (5%)
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--- 294
+ + + + L ALE + L+ P+L ++ Q A G
Sbjct: 1 GAALASTDAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQ 60
Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDM 348
++ T +SV GV+L P + G + + IQ +VS N A
Sbjct: 61 TSINTNTNAGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGN 120
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P R T V SG T++L GL+K D + +P L +IP L LF N+ ++ T
Sbjct: 121 PRISTRSVATQVAAQSGQTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRT 180
Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSV 436
E+ + TP ++ + + D Y
Sbjct: 181 ELIVLITPRVI--TSSSQARQVTDDYRQ 206
>gi|237805025|ref|YP_002889179.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis B/TZ1A828/OT]
gi|231273325|emb|CAX10240.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis B/TZ1A828/OT]
Length = 921
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q + G G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626
Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
+ +++ G G++
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686
Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
+ +L AL++ + P + A Q ASF G ++T
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + ++ D GV L T T+ + L+I+ +SE P A T
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 866 SSFEEGTALSNTEGYR 881
>gi|166154016|ref|YP_001654134.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis 434/Bu]
gi|301335216|ref|ZP_07223460.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis L2tet1]
gi|165930004|emb|CAP03487.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis 434/Bu]
Length = 921
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q + G G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626
Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
+ +++ G G++
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686
Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
+ +L AL++ + P + A Q ASF G ++T
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + ++ D GV L T T+ + L+I+ +SE P A T
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 866 SSFEEGTALSNTEGYR 881
>gi|166154891|ref|YP_001653146.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|165930879|emb|CAP06441.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis L2b/UCH-1/proctitis]
Length = 921
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q + G G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626
Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
+ +++ G G++
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686
Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
+ +L AL++ + P + A Q ASF G ++T
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + ++ D GV L T T+ + L+I+ +SE P A T
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 866 SSFEEGTALSNTEGYR 881
>gi|76789414|ref|YP_328500.1| general secretion pathway protein D [Chlamydia trachomatis
A/HAR-13]
gi|237803104|ref|YP_002888298.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis B/Jali20/OT]
gi|76167944|gb|AAX50952.1| general secretion pathway protein D [Chlamydia trachomatis
A/HAR-13]
gi|231274338|emb|CAX11133.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis B/Jali20/OT]
Length = 921
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q + G G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626
Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
+ +++ G G++
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686
Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
+ +L AL++ + P + A Q ASF G ++T
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + ++ D GV L T T+ + L+I+ +SE P A T
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 866 SSFEEGTALSNTEGYR 881
>gi|289525718|emb|CBJ15199.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis Sweden2]
gi|296435288|gb|ADH17466.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis E/150]
Length = 921
Score = 144 bits (364), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q + G G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626
Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
+ +++ G G++
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686
Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
+ +L AL++ + P + A Q ASF G ++T
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + ++ D GV L T T+ + L+I+ +SE P A T
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 866 SSFEEGTALSNTEGYR 881
>gi|270157060|ref|ZP_06185717.1| type II secretory pathway protein LspD [Legionella longbeachae
D-4968]
gi|289164527|ref|YP_003454665.1| type II protein secretion LspD [Legionella longbeachae NSW150]
gi|269989085|gb|EEZ95339.1| type II secretory pathway protein LspD [Legionella longbeachae
D-4968]
gi|288857700|emb|CBJ11543.1| type II protein secretion LspD [Legionella longbeachae NSW150]
Length = 786
Score = 144 bits (364), Expect = 3e-32, Method: Composition-based stats.
Identities = 49/275 (17%), Positives = 106/275 (38%), Gaps = 24/275 (8%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
K+V+ L+I Q+ ++ +AE+ +D + +G + + P
Sbjct: 489 KRVIGQLDIK-PAQLLIEALVAEINQDDVNDLGIEWGSNQQTGKPGGFR----------- 536
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G + F+ ++AL RA L+ P++ + + A G Q + +
Sbjct: 537 NGFAIINSKTQIADFQAQIYALARAHKANILSTPSVVVLDNRQAKILVGKQVSVASTNYP 596
Query: 302 T---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPS 350
T+ + + L+ P + I ++I +P A P+
Sbjct: 597 NNAGGTTPASPYTTFDRVNVALHLYVRPQITRGNGIQMQIDQGNDTLDPPATAEASVNPT 656
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R+ T+V + SG +VL GL +D + +P+L +P +G LF+ + RE+ +
Sbjct: 657 FRISSIVTSVHVESGDIVVLGGLTQDRLDNDNNRLPVLGDLPGVGRLFKRNINTREKRVL 716
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
+ P +++ + + Y+ + +
Sbjct: 717 MVFIKPIILRN-ERDTMHLSGEKYNNIRQYELDWL 750
>gi|296437143|gb|ADH19313.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia trachomatis G/11222]
Length = 921
Score = 144 bits (364), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q + G G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626
Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
+ +++ G G++
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686
Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
+ +L AL++ + P + A Q ASF G ++T
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + ++ D GV L T T+ + L+I+ +SE P A T
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 866 SSFEEGTALSNTEGYR 881
>gi|196230668|ref|ZP_03129529.1| type II and III secretion system protein [Chthoniobacter flavus
Ellin428]
gi|196225009|gb|EDY19518.1| type II and III secretion system protein [Chthoniobacter flavus
Ellin428]
Length = 864
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 69/379 (18%), Positives = 129/379 (34%), Gaps = 112/379 (29%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
A+ + ++ Q ++++ G QV ++ E+++ LK++GF +
Sbjct: 462 AIYIIKSSRLIVRNTQDQLDLVEQIVTSTGGQGPVQVEIESKFVEIQQTNLKELGFDWLL 521
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD----------------------------------- 244
+ + + A G + +
Sbjct: 522 GQFNLPSTYNAFAGGGTTGTAPALNPSDFPFVNGGVPVGQNSITAGNRSGNNGISANAID 581
Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+V GV F+ V+ AL + + L+ P +T SGQ A
Sbjct: 582 ALLFPINGSSQVAPAIAAVAGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRAVIE 641
Query: 289 SGGQHLYKTVSSS-------------------------------TGATSVTTHDYGVVLH 317
+ Y T + T T+ T + GV L
Sbjct: 642 IIREFRYPTEFTPPQIPQTFGNTGGGILGGGGGSSSTGSFPVTPTTPTAFETRNTGVTLE 701
Query: 318 FTPTVLSPG-RIGLRIQTEV-------------------------SEPVIGVNAGDMPSY 351
P + G I L + +V ++ VI N + P +
Sbjct: 702 VEPVIGPDGYTIDLNLVPQVVEFEGFINYGSPITSSVTNPITGTSTQAVITPNVINQPIF 761
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
RK T+V + G T+VL GL+++D+Q++++ +P++ +PI+G LFR+S + +
Sbjct: 762 STRKVTTSVSVYDGSTVVLGGLIREDVQKVEDKVPIIGDVPIIGRLFRSSIDQHIKRNLI 821
Query: 412 IAATPFLV----KPVAMRD 426
I T L+ +PV D
Sbjct: 822 IFVTARLINAAGEPVRAED 840
>gi|262064162|gb|ACY07145.1| IV [Enterobacteria phage f1]
Length = 426
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 63/355 (17%), Positives = 124/355 (34%), Gaps = 38/355 (10%)
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152
N ++G + + + + I L + + V +D V +
Sbjct: 80 NFDMVGSNPSIIQKYNPNNQDYIDELPSSNNQEYDDNSAPSGGFFV-PQNDNVTQTFKIN 138
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194
++ + E F+ + S NLL ++ D
Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSAPKDILDNLPQFLSTVDLPTD 196
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
Q+ ++ I E+++ F + + S GG F G+ +
Sbjct: 197 QILIEGLIFEIQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307
+ AL+ + + L+ P + +SGQ S + G + T + ++
Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTI 312
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ G+ + P ++ G I L I ++ A D+ R TTV L G T
Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
++L GL +P LSKIP++G LF + + EE+ +++ +V+ +
Sbjct: 372 LLLGGLTDYKNTSQDSDVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426
>gi|302038138|ref|YP_003798460.1| putative general secretion pathway protein D [Candidatus Nitrospira
defluvii]
gi|300606202|emb|CBK42535.1| putative General secretion pathway protein D [Candidatus Nitrospira
defluvii]
Length = 765
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 78/452 (17%), Positives = 150/452 (33%), Gaps = 71/452 (15%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
P + A + +GK ++ +K V D + + D + + +
Sbjct: 169 PVTLQFRNAGLKEVVEALGKAAHVNFVFDK----DVRNDPVTISLEDKPFDEALSLVLNS 224
Query: 87 MYLFGKNVGQANVIL-------IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
LF + G I+ M+ L + L+ + +I
Sbjct: 225 NSLFAQKAGPTLYIISPNTKQKQEQYQDLMIRTFYLSSAKAKDMVALLKSMLDVKHIHGN 284
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+T+V+ ++ +++ ++ N + +V
Sbjct: 285 EALNTIVIRDQPEKVELAEKIIQA-------------------------NDREDSEVLFD 319
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--- 256
V + EV R + + G + ++ F G + ++ +
Sbjct: 320 VEVLEVNRTVDQTYGLSYPKQIGAALIPPGFTGAIAGDIAQQFTYRNLASLGQDSYLFKL 379
Query: 257 --ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--------------TVSS 300
L ++ T +TLA P + ++ + A G + V +
Sbjct: 380 PTNVQLDFFKQVTDAKTLAAPKVRVLNNKKAEVNIGDKQPILLSTTNVLPGQAATGAVPT 439
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR-----VRK 355
++ TS+ D GV L P + + L+++ EV V P R
Sbjct: 440 TSTVTSIEFRDTGVKLTVEPNIHLANELALKMKIEVIRLGDVVLLQQSPPITQFKFGNRS 499
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
A+T + + G TIVL GLL+++ ++ K IP L IP LG L + + R TE+ + T
Sbjct: 500 AETMLNVRDGETIVLGGLLQEEDRRTKVTIPWLGDIPFLGNLLSSFKTQRVTTEVILTIT 559
Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
P +V L P +AF+
Sbjct: 560 PHIV-----NSLRLPGP------QGQAFWSGT 580
>gi|296162480|ref|ZP_06845271.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia sp. Ch1-1]
gi|295887293|gb|EFG67120.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia sp. Ch1-1]
Length = 709
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 84/239 (35%), Gaps = 15/239 (6%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------GGKFVSEGGDFS 246
V + + +V + +G + + V+ G + +
Sbjct: 354 VEIDAVVIDVSSSAARSLGVAWGGSNGRVSAASGTINSPLTFGAPALATAAGVASGLNLA 413
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+HALE A R L+ P + ++ A TS +
Sbjct: 414 TLVGNSAQYLFAQIHALEDAGQARVLSSPQVLTLNNMEAVLTSHSSVYVRVA--GNQDVD 471
Query: 307 VTTHDYGVVLHFTPTVLS----PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
+ D G+ L TP++ S I L IQ + ++ +P T +
Sbjct: 472 LYNIDTGLTLKVTPSIESAAEPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIV 531
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
G ++++ G + + +P+L +P +GALFR+++ RE E I TP L +
Sbjct: 532 RDGESLLVGGYQYERSESTTSKVPVLGDVPYVGALFRDTQTTRERLERLILITPRLKRA 590
>gi|331654572|ref|ZP_08355572.1| general secretion pathway protein D [Escherichia coli M718]
gi|331047954|gb|EGI20031.1| general secretion pathway protein D [Escherichia coli M718]
Length = 615
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 57/300 (19%), Positives = 105/300 (35%), Gaps = 44/300 (14%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
>gi|296436215|gb|ADH18389.1| Yop proteins translocation protein C/general secretion pathway
protein [Chlamydia trachomatis G/9768]
gi|296438075|gb|ADH20236.1| Yop proteins translocation protein C/general secretion pathway
protein [Chlamydia trachomatis G/11074]
gi|297140576|gb|ADH97334.1| Yop proteins translocation protein C/general secretion pathway
protein [Chlamydia trachomatis G/9301]
Length = 921
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q + G G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626
Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
+ +++ G G++
Sbjct: 627 KVAYASGLLSSTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686
Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
+ +L AL++ + P + A Q ASF G ++T
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + ++ D GV L T T+ + L+I+ +SE P A T
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 866 SSFEEGTALSNTEGYR 881
>gi|167030895|gb|ABZ05763.1| HrcC [Pectobacterium carotovorum subsp. carotovorum]
Length = 689
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 64/464 (13%), Positives = 136/464 (29%), Gaps = 61/464 (13%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L A+ + V+ + G I + N + + + V++
Sbjct: 144 ALSGIGLLDARFGWGELPEEGVVLV----TGPQAYIDLIRNFSQQREKQDERRKVMIFPL 199
Query: 75 TKADVVVHS----PRTMYLFGKNVGQANVI--LIGHDGKQML----NLDILIERDIAHLE 124
A V + + + + G A ++ L+ + + + + +
Sbjct: 200 RYASVSDRTLQYRDQKVTI----PGVATILNELMDGQRSAPAGASGPMPVQPDNGMEAMR 255
Query: 125 MTLRRFI--------ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
+ R + N V L G + ++
Sbjct: 256 DSTRSLMTRLATRNNPGRNGEAS---GRVTLSGKISAD---------VRNNALLIRDDEK 303
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
+ ++++ +++ V + I +V R + ++ + +
Sbjct: 304 RRAEYQQLVEHIDVPQNL-VNIDAIILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRST 362
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
FVS D F + ALE +A P++ + Q A
Sbjct: 363 LFVS-----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAIVDFSRTAFIT 411
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI-GLRIQTEVSEPVIGVNAGDMPSYRVR- 354
+ G L TP V+ G +++ ++ + + S R
Sbjct: 412 AT--GERVADIQPVTAGTSLQVTPRVIGEGTQRSIQLVIDIEDGQVETGREGEASGVKRG 469
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T + +VL G ++ IP+L IP+LG LF ++R E
Sbjct: 470 TVSTQALIGENRALVLGGFHVEESGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFIL 529
Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
TP LV D + P + S + + +N++ +
Sbjct: 530 TPHLV-----GDQTDPTRYVSSANRQQ--LNGAMNRVAQRNGKT 566
>gi|227328511|ref|ZP_03832535.1| type III secretion protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 689
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 64/464 (13%), Positives = 136/464 (29%), Gaps = 61/464 (13%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L A+ + V+ + G I + N + + + V++
Sbjct: 144 ALSGIGLLDARFGWGELPEEGVVLV----TGPQAYIDLIRNFSQQREKQDERRKVMIFPL 199
Query: 75 TKADVVVHS----PRTMYLFGKNVGQANVI--LIGHDGKQML----NLDILIERDIAHLE 124
A V + + + + G A ++ L+ + + + + +
Sbjct: 200 RYASVSDRTLQYRDQKVTI----PGVATILNELMDGQRAAPAGASGPMPVQPDNGMEAMR 255
Query: 125 MTLRRFI--------ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
+ R + N V L G + ++
Sbjct: 256 DSTRSLMTRLATRNNPGRNGEAS---GRVTLSGKISAD---------VRNNALLIRDDEK 303
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
+ ++++ +++ V + I +V R + ++ + +
Sbjct: 304 RRAEYQQLVEHIDVPQNL-VNIDAIILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRST 362
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
FVS D F + ALE +A P++ + Q A
Sbjct: 363 LFVS-----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAIVDFSRTAFIT 411
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI-GLRIQTEVSEPVIGVNAGDMPSYRVR- 354
+ G L TP V+ G +++ ++ + + S R
Sbjct: 412 AT--GERVADIQPVTAGTSLQVTPRVIGEGTQRSIQLVIDIEDGQVETGREGEASGVKRG 469
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T + +VL G ++ IP+L IP+LG LF ++R E
Sbjct: 470 TVSTQALIGENRALVLGGFHVEESGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFIL 529
Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
TP LV D + P + S + + +N++ +
Sbjct: 530 TPHLV-----GDQTDPTRYVSSANRQQ--LNGAMNRVAQRNGKT 566
>gi|300310140|ref|YP_003774232.1| type II/III HrcC transmembrane protein [Herbaspirillum seropedicae
SmR1]
gi|300072925|gb|ADJ62324.1| type II/III HrcC transmembrane protein [Herbaspirillum seropedicae
SmR1]
Length = 693
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 42/250 (16%), Positives = 88/250 (35%), Gaps = 19/250 (7%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
++N L++ QV ++ I ++ R L ++G + + +
Sbjct: 328 LINQLDVK-PQQVEIEALIVDIDRSRLAEMGVEWGARAGVVNTTVNGTTTQSSGTDLPLP 386
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
++ + D F L A+E R LA PT+ + +A +
Sbjct: 387 GATLL-ISDAARFYARLKAMESNGEARVLATPTVLTLDNVAAVLDLSQSAYVSLI--GER 443
Query: 304 ATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPV------------IGVNAGDM 348
++ G +L P ++ G R+ L + E +
Sbjct: 444 VADMSDITAGTMLRVIPRIIDDGGQTRVRLEVDIEDGSLNNGNNDSGSNSSRGTGASTIA 503
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
S +T + + T+++ G + + + K+ +PLL +P++G LFR+ +
Sbjct: 504 ASVTRSTINTQAIIDAQQTLMIGGYRAESLIRNKQKVPLLGDLPVVGGLFRSESRSNSTR 563
Query: 409 EIFIAATPFL 418
E TP +
Sbjct: 564 ERLFLITPRI 573
>gi|261854769|ref|YP_003262052.1| general secretion pathway protein D [Halothiobacillus neapolitanus
c2]
gi|261835238|gb|ACX95005.1| general secretion pathway protein D [Halothiobacillus neapolitanus
c2]
Length = 725
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 95/490 (19%), Positives = 163/490 (33%), Gaps = 75/490 (15%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
+L+ + L P A L ++N+ VI I + KKI +++ + V
Sbjct: 158 HLRYVPAAPLLTVLRQIMPQQAALSVYPDSNSLVITDRAGNIDRLKKILAKVDQPAVGDV 217
Query: 63 PVDVQDVLVSDPTKADVVVH---------------------------------SPRTMYL 89
+ +D + + ++ L
Sbjct: 218 EIIRLKRASADSVVSTLKALFGASGGGGAKGAPVPGGGAGGNFSSVPAFAADDRTNSVLL 277
Query: 90 FGKNVGQANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
G V +A + I++ D Q + + R L + S
Sbjct: 278 SGDAVSRAKMRAIILNLDMPQTNYGNTRVFRLKYANAEDLVDVLKGIVSTNGATSTGATA 337
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEV 205
T D+ + ++ L+ + + + V++ L+I QV ++ IAEV
Sbjct: 338 TKEATTNPDNNQLEIAADKSLNALVVTASPSRMQTVESVIDQLDIR-RKQVLVEAIIAEV 396
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-------------- 251
+ K++G Q + G SG + F G S + G
Sbjct: 397 SNGVTKKLGTQF-LVGGGSGTVPIGISTFNGLLSSVASSAAQAGTGSVGSAIGLGLAGAL 455
Query: 252 -------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
F ++ AL + L+ P+L + Q AS G T
Sbjct: 456 GDGGNIGVGRYGQGGADFALLVSALAGNSGNNILSTPSLLTLDNQEASIVVGQNIPIVTG 515
Query: 299 SS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
S + ++T D GV L TPT+ G + L+I+ EVS +
Sbjct: 516 SYAQTGSATSPTNPFQTITREDIGVKLKVTPTISPDGTVRLKIEQEVSSLDSAAQSSAGL 575
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
R TTV++ G +VL GL+ D ++ +P L IPILG LFR + +
Sbjct: 576 ITNKRNVTTTVQVDDGDVVVLGGLIDDSTNSNQQSVPGLGDIPILGNLFRYRSASTNKRN 635
Query: 410 IFIAATPFLV 419
+ I P +V
Sbjct: 636 LMIFIRPLIV 645
>gi|254447525|ref|ZP_05060991.1| type II and III secretion system protein [gamma proteobacterium
HTCC5015]
gi|198262868|gb|EDY87147.1| type II and III secretion system protein [gamma proteobacterium
HTCC5015]
Length = 506
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 48/260 (18%), Positives = 95/260 (36%), Gaps = 24/260 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
++ + G QV ++ T+ E+ Q G + + + S
Sbjct: 232 GFVDRVVERGRRQVLIEATVVEIDLSQSYQAGVDWQRVMNGGEWTLQQSMTKPSLAASPM 291
Query: 243 GDFSVKGVLDRFSFE-TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---- 297
+ R S + LE+ + + P + A++ Q + + +Y T
Sbjct: 292 TLLAQHEKQSRDSVTRAAVTLLEQFGDVNVHSRPRIVALNNQPSLLKVIDKRVYFTLDVQ 351
Query: 298 -------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------ 344
++ST T + T G + TP V + L ++ +S V+
Sbjct: 352 NTTASGGATTSTVETHINTLPVGFTMSVTPFVTQSD-VTLSVRPSLSRITRFVDDPSPAL 410
Query: 345 -----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+P VR+ +T + L T ++ GL+++ + +P+LS+IP LG LF+
Sbjct: 411 AAEGIVSRVPEVEVREMETLLRLDGEQTALIGGLMQERRSEEHYAVPVLSRIPWLGELFK 470
Query: 400 NSRFNREETEIFIAATPFLV 419
++E+ I V
Sbjct: 471 GREERWNKSELVILLRARRV 490
>gi|323941937|gb|EGB38116.1| general secretion pathway protein D [Escherichia coli E482]
Length = 615
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 57/300 (19%), Positives = 105/300 (35%), Gaps = 44/300 (14%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
>gi|2897962|gb|AAC38377.1| EscC [Escherichia coli]
Length = 512
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + +
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQVNISSSVISNA 327
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+F ++AL++ + + L++P++ ++ A K S S+ + G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLRSITSG 385
Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
+L TP +L L ++ + +P + + T
Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G +++L G ++D K+GIPLLS IP++G+LF ++ +
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505
Query: 419 VKPVAMR 425
+K +
Sbjct: 506 IKSASSE 512
>gi|319791845|ref|YP_004153485.1| general secretion pathway protein d [Variovorax paradoxus EPS]
gi|315594308|gb|ADU35374.1| general secretion pathway protein D [Variovorax paradoxus EPS]
Length = 770
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 28/264 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------- 240
QV ++ I EV + G Q ++ + ++ ++
Sbjct: 414 GRRAQVMIEALIVEVSANKAANFGVQWQSALGNNAVIGTNSSLNRNNILALTQALATRNP 473
Query: 241 --------EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + + G + + + L+ P L + + A G
Sbjct: 474 AGLASSIQPGLNLGIAGKIGGQYILGAIANFFNSDGDANVLSTPNLLTLDNEEAKIIIGQ 533
Query: 292 QHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IG 342
+ T S + T+V D G+ L PT+ G + + I E S
Sbjct: 534 NVPFPTGSYASTSGSVGVNPFTTVERKDVGLTLRVRPTINENGTVRMTIFQETSTVDQNS 593
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ + P+ R +++V + GG ++L GLL D E IPL IP+LG LF+N
Sbjct: 594 LANPNGPTTNKRSIESSVLVEDGGLVMLGGLLSDTYNNNIEKIPLAGDIPVLGNLFKNEN 653
Query: 403 FNREETEIFIAATPFLVKPVAMRD 426
R ++ + + P +++ A +
Sbjct: 654 RTRNKSNLMMFLRPAVMRDGASTE 677
>gi|323946657|gb|EGB42679.1| general secretion pathway protein D [Escherichia coli H120]
Length = 615
Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 57/300 (19%), Positives = 105/300 (35%), Gaps = 44/300 (14%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612
>gi|332526236|ref|ZP_08402367.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Rubrivivax benzoatilyticus JA2]
gi|332110072|gb|EGJ10700.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Rubrivivax benzoatilyticus JA2]
Length = 318
Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 40/262 (15%), Positives = 89/262 (33%), Gaps = 15/262 (5%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------- 242
+ ++ I ++ D L+++G ++ S +
Sbjct: 60 PQALEIEARIVDIDTDRLRELGINWRLSSGRSSLLFGNGTNSDTLLSGSQRPEDITPQGK 119
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
G F + ++AL+ A + ++ P + +S A F + +
Sbjct: 120 GGFLSAVLGGADELALRINALQDQGAAKVVSSPQVLTLSDVEAVFDTSRTFYVRVAGRED 179
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTV 360
+ + G L TP V + +++ + + +P +T
Sbjct: 180 --VDLFSVSAGTTLRVTPHVFRDEHGVRIKLLVAIEDGALSQQQVDQIPVVERASINTQA 237
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G ++++ GL ++ +P L IP+LG LF++S + TE +P LV
Sbjct: 238 LIFEGESLLVGGLTREASSNGVTKVPFLGDIPVLGNLFKSSVDSLRRTERLFLISPRLV- 296
Query: 421 PVAMRDLSRPDDHYSVEDDAKA 442
P + P+ + +
Sbjct: 297 PARRVAATAPEGAAPPATENRR 318
>gi|51103131|gb|AAT96274.1| hrcC [Pseudomonas viridiflava]
Length = 753
Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 45/274 (16%), Positives = 92/274 (33%), Gaps = 16/274 (5%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G ++ + + ++ + + + + V L + V + I ++ R
Sbjct: 336 SGESKSNSNRRVVADVRNNAVLIYDDPEKRETYQQLVQQLDQ--PSNLVEIDAVILDIDR 393
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
L + + S S S G S + D F + ALE
Sbjct: 394 SQLSSLESRWSARAGSVNFGSSLL----------TGGSSTLFINDFDRFFADIQALEGQG 443
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
+A P++ + Q A T +V G L P ++ +
Sbjct: 444 VASVIARPSVLTLENQPAVIDFSRTAYITTT--GERVANVQPVTAGTSLRVIPRTIAGEQ 501
Query: 328 IG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
++ ++ + + D P + T + ++V+ G D+ + ++ +
Sbjct: 502 PNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKV 561
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P+L +P++GALF + R E TP LV
Sbjct: 562 PILGSLPVIGALFTSKRHEVSRRERLFILTPRLV 595
>gi|34500885|gb|AAQ73913.1| HrcC [Pectobacterium carotovorum subsp. carotovorum]
Length = 689
Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 64/464 (13%), Positives = 137/464 (29%), Gaps = 61/464 (13%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L A+ + V+ + G I + N + + + V++
Sbjct: 144 ALSGIGLLDARFGWGELPEEGVVLV----TGPQAYIDLIRNFSQQREKQDERRKVMIFPL 199
Query: 75 TKADVVVHS----PRTMYLFGKNVGQANVI--LIGHDGKQML----NLDILIERDIAHLE 124
A V + + + + G A ++ L+ + + + + +
Sbjct: 200 RYASVSDRTLQYRDQKVTI----PGVATILNELMDGQRAAPAGASGPMPVQPDNGMEAMR 255
Query: 125 MTLRRFI--------ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
+ R + N V L G + ++
Sbjct: 256 DSTRSLMTRLATRNNPGRNGEAS---GRVTLSGKISAD---------VRNNALLIRDDEK 303
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
+ ++++ +++ V + I +V R + ++ + +
Sbjct: 304 RRAEYQQLVEHIDVPQNL-VNIDAIILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRST 362
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
FVS D F + ALE +A P++ + Q A
Sbjct: 363 LFVS-----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAIVDFSRTAFIT 411
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGDMPSYRVR- 354
+ G L TP V+ G + +++ ++ + + S R
Sbjct: 412 AT--GERVADIQPVTAGTSLQVTPRVIGEGAQRSIQLVIDIEDGQVETGREGEASGVKRG 469
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T + +VL G ++ IP+L IP+LG LF ++R E
Sbjct: 470 TVSTQALIGENRALVLGGFHVEESGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFIL 529
Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
TP LV D + P + S + + +N++ +
Sbjct: 530 TPHLV-----GDQTDPTRYVSSANRQQ--LNGAMNRVAQRNGKT 566
>gi|312972778|ref|ZP_07786951.1| general secretion pathway protein D [Escherichia coli 1827-70]
gi|310332720|gb|EFP99933.1| general secretion pathway protein D [Escherichia coli 1827-70]
Length = 613
Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 56/300 (18%), Positives = 105/300 (35%), Gaps = 44/300 (14%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ ++
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKK 612
>gi|323173796|gb|EFZ59425.1| general secretion pathway protein D [Escherichia coli LT-68]
Length = 613
Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 56/300 (18%), Positives = 105/300 (35%), Gaps = 44/300 (14%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + S + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
++S +V G++L TP + + + I+ EVS+ +
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ + RK TTV G IVL GL+ D + +PLL IP++G LF+++ ++
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKK 612
>gi|51103173|gb|AAT96315.1| HrcC [Pseudomonas viridiflava]
Length = 753
Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 45/274 (16%), Positives = 92/274 (33%), Gaps = 16/274 (5%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G ++ + + ++ + + + + V L + V + I ++ R
Sbjct: 336 SGESKSNSNRRVVADVRNNAVLIYDDPEKRETYQQLVQQLDQ--PSNLVEIDAVILDIDR 393
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
L + + S S S G S + D F + ALE
Sbjct: 394 SQLSSLESRWSARAGSVNFGSSLL----------TGGSSTLFINDFDRFFADIQALEGQG 443
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
+A P++ + Q A T +V G L P ++ +
Sbjct: 444 VASVIARPSVLTLENQPAVIDFSRTAYITTT--GERVANVQPVTAGTSLRVIPRTIAGEQ 501
Query: 328 IG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
++ ++ + + D P + T + ++V+ G D+ + ++ +
Sbjct: 502 PNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKV 561
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P+L +P++GALF + R E TP LV
Sbjct: 562 PILGSLPVIGALFTSKRHEVSRRERLFILTPRLV 595
>gi|182678562|ref|YP_001832708.1| general secretion pathway protein D [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634445|gb|ACB95219.1| general secretion pathway protein D [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 801
Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 9/239 (3%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--FSVK 248
QV ++VT+AEV G Q + S+ +A +
Sbjct: 540 RPPVQVEIEVTVAEVTLTDALNYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNL 599
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--- 305
+ + V++AL T ++ L+ P+L + Q A G Q + +++ T
Sbjct: 600 MIGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANP 659
Query: 306 ----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
SV D G++L+ P V + G + L I+ ++S P+ R+ +T+
Sbjct: 660 AIVNSVDYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIA 719
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+P+G T++LAGL+++ + G+P++SKI L L N + TE+ + P +++
Sbjct: 720 IPNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILR 778
>gi|34498087|ref|NP_902302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC
12472]
gi|34103942|gb|AAQ60302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC
12472]
Length = 561
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 62/415 (14%), Positives = 134/415 (32%), Gaps = 41/415 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + + +G K+ ++++ V D T + + +
Sbjct: 155 DLVVNAASMMDKQSDGLELGRQKIGVVRLGNT----FVGDRTY----DLRDQKIVI---- 202
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A VI L+ + K + L A + R + L +
Sbjct: 203 PGMATVIEKLLDGERKPVAGL----APPAAEKRDDIPAMPDFKEGRGLPYQAGLSLPEAL 258
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + + L++A V L + I ++++D
Sbjct: 259 KRDAAAGDIKVIAYPDTNSLLVKGTAEQVRFIENLARALDVAKRH-VELSLWIIDLQKDD 317
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L Q+G S + G +++ G S LD F + A+
Sbjct: 318 LDQLGVNWS--------GSVTVGNKLGVTLNQAGSLS---TLDGTRFLAAVMAMTSKKKA 366
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P + A F + K + + YG ++ P + G+I
Sbjct: 367 NVVSRPVVLTQENIPAIFDNNRTFYAKL--EGERSVDLQHVTYGTLISVLPRFAADGQIE 424
Query: 330 LRIQTEV------SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
+ + E + +P + T +P G ++++ G +D ++ +
Sbjct: 425 MSLSIEDGSQARAPDYSSDNKDAGLPEVGRTRISTVARVPQGKSLLIGGFTRDASERGEG 484
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRDLSRPDDHYSVE 437
+PLL +P++G LFR + T P + + D
Sbjct: 485 KVPLLGDLPLVGGLFRYQSAKQTNTVRVFLIQPREIDDALTPDASDLSADLVRRA 539
>gi|269963152|ref|ZP_06177487.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832116|gb|EEZ86240.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 623
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 61/308 (19%), Positives = 111/308 (36%), Gaps = 37/308 (12%)
Query: 146 VLHGMVRTIQDSQRAVE-----LSETFLSQSGRNQYANSSSKKVMNLLNIAGED------ 194
VL G V+T + + E + T + A+ ++ +N + +
Sbjct: 222 VLSG-VQTQIKATKESEETDINTAATTTKNVSVHAGASVEAEPGLNAIIVRDTQARLPLY 280
Query: 195 ----------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFV 239
Q ++V +I ++ + L Q+G S G G V
Sbjct: 281 RKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSILDIKTTGDVDGGDV 340
Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ G + K +LD + + LE + + ++ PTL A + K
Sbjct: 341 TLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVK 400
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSY 351
+ T A + YG +L P ++ I L + E + D+PS
Sbjct: 401 LIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSI 458
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T
Sbjct: 459 RKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRM 518
Query: 412 IAATPFLV 419
P +V
Sbjct: 519 FIIEPRIV 526
>gi|50508104|dbj|BAD30080.1| outer-membrane protein of Hrp(typeIII) secretion pathway
[Pseudomonas syringae pv. tabaci]
Length = 699
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 47/265 (17%), Positives = 88/265 (33%), Gaps = 16/265 (6%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R +K++ L+++ + + + I ++ R+ L ++ + +
Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
S G + + G S + + F LHALE + + P++
Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSIL 393
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A S ++ G L P L ++ L + E
Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLSVDIE 451
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ I PS R T + G++V+ G + IPLL IP +G
Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511
Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
LF++ + E TP L+
Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536
>gi|91782693|ref|YP_557899.1| putative type III secretion hypersensitivity response secretion
protein, HrcC/HrpA1- like [Burkholderia xenovorans
LB400]
gi|91686647|gb|ABE29847.1| Putative type III secretion hypersensitivity response secretion
protein, HrcC/HrpA1- like protein [Burkholderia
xenovorans LB400]
Length = 736
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 44/238 (18%), Positives = 82/238 (34%), Gaps = 15/238 (6%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------GGKFVSEGGDFS 246
V + + +V + +G + S ++ G + +
Sbjct: 354 VEIDAVVIDVSSSAARSLGVAWGGSNGRISGSSGTINSPLTFGAPALATAAGMASGLNLA 413
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+HALE A R L+ P + ++ A TS +
Sbjct: 414 TLVGNSAQYLFAQIHALEDAGQARVLSSPQVLTLNNMEAVLTSHSSVYVRVA--GNQDVD 471
Query: 307 VTTHDYGVVLHFTPTV----LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
+ D G+ L TP++ I L IQ + ++ +P T +
Sbjct: 472 LYNIDTGLTLKVTPSIESAADPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIV 531
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G ++++ G + + +P+L +P LG LFR+++ RE E I TP L +
Sbjct: 532 RDGESLLVGGYQYERSESTTSKVPVLGDVPYLGVLFRDTQTTRERLERLILITPRLKR 589
>gi|297538911|ref|YP_003674680.1| type II and III secretion system protein [Methylotenera sp. 301]
gi|297258258|gb|ADI30103.1| type II and III secretion system protein [Methylotenera sp. 301]
Length = 638
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 18/240 (7%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
V L++ + EV+R L+ +G + + K + G+ V +
Sbjct: 329 VMLELQVMEVKRSYLQNLGVN---PITGISVPVPSSGILTVKDLRVSGNSLVVNGIPGLV 385
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDY 312
F+ + + LA P + + +A G + T + ++ + +V D
Sbjct: 386 FDA------TSGDVNLLANPKIRVKNKDTARIHIGEKVPVFTANVASTGVTSQTVQYIDA 439
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGG 366
G+ L PT+ + + ++I V G + R A T + L G
Sbjct: 440 GLKLEVEPTISAADDVTIKINLNVGSIGDKVVASSGASQSIAFRVGTRLATTQLRLHDGE 499
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
T +LAGL+ D ++ GIP LSKIP+LG LF N ++ +TEI ++ TP +++ +
Sbjct: 500 TQILAGLIDDQDRKNVSGIPGLSKIPLLGKLFSNQTDDKVKTEIVLSITPHIIRQRTPQQ 559
>gi|330895850|gb|EGH28136.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. japonica str. M301072PT]
Length = 640
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 16/265 (6%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R + +K++ L+++ + + + I ++ R+ L ++ + +
Sbjct: 225 RVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 283
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
S GG + + G S + + F LHALE + + P++
Sbjct: 284 FNAGSVN---------GGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSIL 334
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A S ++ G L TP L ++ L + E
Sbjct: 335 TLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIE 392
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ I PS R T + G++V+ G + +PLL IP +G
Sbjct: 393 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVG 452
Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
LF++ + E TP L+
Sbjct: 453 KLLFQSRSRELSQRERLFILTPRLI 477
>gi|114330532|ref|YP_746754.1| type II and III secretion system protein [Nitrosomonas eutropha
C91]
gi|114307546|gb|ABI58789.1| type II and III secretion system protein [Nitrosomonas eutropha
C91]
Length = 767
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 85/422 (20%), Positives = 147/422 (34%), Gaps = 59/422 (13%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P E + I + I+ ++ + + V D + DV
Sbjct: 187 PITMEFRDTSLKAIFELISRTAGINFVFDRNVQ---QEATASMFVRDNSIEDVLKLLLLT 243
Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
V + T+ ++ + + ++ + D+ + +R +
Sbjct: 244 NQLAYKVLNSNTLLIYPDTPAK-----QKDYQELVVRSFHVANTDVKQMVAMIRGLVKAR 298
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
+I V + V+ + + L E ++ +
Sbjct: 299 DIYVNEKLNLFVIRDTL-------EMIRLVERLVAINDFPDPE----------------- 334
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLDR 253
V L V + EV+RD ++G + + S P A V + G
Sbjct: 335 -VMLDVVVLEVKRDNTLELGPNMPTSVTFSAIPGVGAPAQAAADSVVKMSMIKNAGFEGL 393
Query: 254 FSFE----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306
SF + T LA P + S + A G + TV+++ A S
Sbjct: 394 RSFTISNQAKIDFGRTLTNADVLANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAAS 453
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTV 360
T D G+ P V + + L+ EVS G NA R A+T +
Sbjct: 454 ATYIDVGLKFEVEPVVRTNNEVTLKALLEVSSNLGEKRSGGGDNAATAIVIGTRTAETVL 513
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
EL G T VLAGL++DD+ ++K GI L++IPILG +F +TEI + TP +++
Sbjct: 514 ELRDGETQVLAGLIQDDLSRVKSGIAGLTEIPILGDIFSKQVRKHNKTEIILLITPHIIR 573
Query: 421 PV 422
V
Sbjct: 574 NV 575
>gi|313142359|ref|ZP_07804552.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313131390|gb|EFR49007.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 505
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 45/280 (16%), Positives = 97/280 (34%), Gaps = 34/280 (12%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSK 228
+ + L+ + QV + V I + + G G+S G +
Sbjct: 217 ESYIQSLHQRLQKQVLIDVHILSITHNNTNTTGINWDELYNLQNLIIPAFGEGASFGGNG 276
Query: 229 SFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQS 284
G V + G ++ ++ S ++ LE + +++ P + ++ Q
Sbjct: 277 EVGNTSGINIVGQKGVSNLHYGINIFSQGLSLNRIIEFLESYGKVESISNPKVLTLNNQP 336
Query: 285 ASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
A + G Q+ + + + GV+L TP ++ I L+I
Sbjct: 337 AMISVGDILRYQKNTIYQNTNAQTTLTNTDNEYPSLFAGVLLDITP-LVFGEEIMLKINP 395
Query: 335 EVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+++ P+ + + V + + ++L GL+ + + IP+L
Sbjct: 396 SITKTKENRTEIPNTAFETPPNLTTNQLSSIVSVKNNQKVILGGLISKNFATKENKIPIL 455
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
IP++ LF S+ EI P +++ L
Sbjct: 456 GSIPLIKPLFSYSQEVENTEEIVFIIEPKIIQAQDSISLE 495
>gi|269105039|ref|ZP_06157734.1| type III secretion system outer membrane pore YscC [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268160674|gb|EEZ39172.1| type III secretion system outer membrane pore YscC [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 624
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 59/308 (19%), Positives = 111/308 (36%), Gaps = 37/308 (12%)
Query: 146 VLHGMVRTIQDSQRAVE-----LSETFLSQSGRNQYANSSSKKVMNLLNIAGED------ 194
VL G V+T + + E + T + A+ ++ +N + +
Sbjct: 222 VLSG-VQTQIKATKESEETDINTAATTTKNVSVHGGASVEAEPGLNAIIVRDTQARLPLY 280
Query: 195 ----------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFV 239
Q ++V +I ++ + L Q+G + S G G V
Sbjct: 281 RKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGIAVGNNSILDIKTTGDVDGGDV 340
Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ G + K +LD + + LE + + ++ PTL A + K
Sbjct: 341 TLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVK 400
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSY 351
+ ++ YG +L P ++ I L + E + ++PS
Sbjct: 401 LIGRE--IAALEKVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDNVPSI 458
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R + T + G ++++ G+ +D++ +PLL IP LGALFRN+ T
Sbjct: 459 RKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRNTTDTTRRTVRM 518
Query: 412 IAATPFLV 419
P +V
Sbjct: 519 FIIEPRIV 526
>gi|325917024|ref|ZP_08179263.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937]
gi|325536775|gb|EGD08532.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937]
Length = 606
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 52/336 (15%), Positives = 106/336 (31%), Gaps = 21/336 (6%)
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
G + + + + + V G D+
Sbjct: 276 WFGGGSPSDRVPVSPPLPGSGGTNAPASVWPEMSP-ARRDGPLAVDTGGGEPASDAPVIE 334
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT- 220
T ++ ++ L+ + + TI E+R ++ +G
Sbjct: 335 ADPRTNSILIRDRPERMAAYGTLIQQLDNR-PKLLQIDATIIEIRDGAMQDLGVDWRFHS 393
Query: 221 -----------GSSSGPSKSFAADFGGKFVSE-GGDFSVKGVLDRFSFETVLHALERATA 268
G G + + S GG + T + ALE+
Sbjct: 394 RRVDVQTGDGRGGQLGYDGTLSGAAAAGATSPLGGTLTAVLGDAGRYLMTRVSALEQTNK 453
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SP 325
+ ++ P + + A Q + ++ + GV L P+V+ S
Sbjct: 454 AKIVSTPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVSLRVLPSVVPGSSN 511
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
G++ L ++ E + +P + T + G ++++AG D Q +
Sbjct: 512 GQMRLDVRIEDGQL-GANTVDGIPVITSSEITTQAFVNEGQSLLIAGYASDTDQTDLNKV 570
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
P LSKIP++G LF++ + + + TP +V P
Sbjct: 571 PGLSKIPLIGNLFKHRQQSGSRLQRLFLLTPHIVSP 606
>gi|330957480|gb|EGH57740.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. maculicola str. ES4326]
Length = 703
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 59/405 (14%), Positives = 130/405 (32%), Gaps = 42/405 (10%)
Query: 45 GKGKKISIGLNKVIILQVPV--DVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQAN 98
G K + + + ++ P D QD++V A + + + + G +
Sbjct: 148 GPAKYVELVRDYSKKVETPEKGDKQDIIVFPLKYASAADRTIRYRDQELVVAGVASILQD 207
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLR--RFIADSNIRVEMVSDTVVLHGMVR---- 152
++ + G+ + D++ ++ + + ++ + G+ +
Sbjct: 208 LLDVRSRGQSIKGTDLIGRGGRGTGGLSGGDGQDTPSLPLNASGINTGALEQGLDQVLHY 267
Query: 153 --------------TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ + R + +K++ L+++ + + +
Sbjct: 268 GSGGGGKSSGKSRSGGRATIRVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEI 326
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
I ++ R+ L ++ + + S G + + G S + + F
Sbjct: 327 DAVILDIDRNELAELSSRWNFNAGSVGGGVNMF---------DAGTTSTMFIQNAGKFTA 377
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
LH LE + + P++ + Q A S ++ G L
Sbjct: 378 ELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQV 435
Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
TP L ++ L + E + I PS R T + G++V+ G
Sbjct: 436 TPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHG 495
Query: 376 DDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
+ IPLL IP +G LF++ E TP L+
Sbjct: 496 LEANDKVHKIPLLGDIPYIGKLLFQSRSRELSNRERLFILTPRLI 540
>gi|330984958|gb|EGH83061.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 703
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 58/405 (14%), Positives = 128/405 (31%), Gaps = 42/405 (10%)
Query: 45 GKGKKISIGLNKVIILQVPV--DVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQAN 98
G K + + + + P D QD++V A + + + + G +
Sbjct: 148 GPAKYVELVRDYSKKVDTPEKDDKQDIIVFPLKYASAADRTIRYRDQELVVAGVASILQD 207
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLR--RFIADSNIRVEMVSDTVVLHGMVR---- 152
++ + G+ + D++ ++ + + ++ + G+ +
Sbjct: 208 LLDVRSRGQSIKGTDLIGRGGRGTGGLSGGDGQDTPSLPLNASGINTGALEQGLDQVLHY 267
Query: 153 --------------TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ + R +K++ L+++ + + +
Sbjct: 268 GSGGGGKSSGKSRSGGRATIRVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEI 326
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
I ++ R+ L ++ + + S G + + G S + + F
Sbjct: 327 DAVILDIDRNELAELSSRWNFNAGSVGGGVNMF---------DAGTTSTMFIQNAGKFTA 377
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
LH LE + + P++ + Q A S ++ G L
Sbjct: 378 ELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQV 435
Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
TP L ++ L + E + I PS R T + G++V+ G
Sbjct: 436 TPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHG 495
Query: 376 DDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
+ +PLL IP +G LF++ E TP L+
Sbjct: 496 LEANDKVHKVPLLGDIPYIGKLLFQSRSRELSNRERLFILTPRLI 540
>gi|22127358|ref|NP_670781.1| hypothetical protein y3484 [Yersinia pestis KIM 10]
gi|108809090|ref|YP_653006.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua]
gi|108810716|ref|YP_646483.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516]
gi|145597787|ref|YP_001161863.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F]
gi|167466374|ref|ZP_02331078.1| hypothetical protein YpesF_00430 [Yersinia pestis FV-1]
gi|229837375|ref|ZP_04457538.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis Pestoides A]
gi|229840587|ref|ZP_04460746.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229842863|ref|ZP_04463015.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Orientalis str.
India 195]
gi|229900911|ref|ZP_04516035.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis Nepal516]
gi|294502759|ref|YP_003566821.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003]
gi|21960442|gb|AAM87032.1|AE013951_7 hypothetical [Yersinia pestis KIM 10]
gi|108774364|gb|ABG16883.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516]
gi|108781003|gb|ABG15061.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua]
gi|145209483|gb|ABP38890.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F]
gi|229682250|gb|EEO78342.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis Nepal516]
gi|229690130|gb|EEO82187.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Orientalis str.
India 195]
gi|229696953|gb|EEO87000.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229705498|gb|EEO91508.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis Pestoides A]
gi|262360791|gb|ACY57512.1| hypothetical protein YPD4_0603 [Yersinia pestis D106004]
gi|262364736|gb|ACY61293.1| hypothetical protein YPD8_0603 [Yersinia pestis D182038]
gi|294353218|gb|ADE63559.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003]
gi|320016744|gb|ADW00316.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 284
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 24/272 (8%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
K+I + + I++V ++ V VS AD + ++ ++ K G A
Sbjct: 26 FENSANAKQIYLPIGGSHIIKVQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 85
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
L + + + +L+ I +R DS I + + ++ +L G T +
Sbjct: 86 LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 145
Query: 161 VELSETFLSQS-----GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
+ + + +N + V+N + + +QV +K+TI E+ +D + IG
Sbjct: 146 ASIVGEATASKKEKERETSYQSNPEYQGVINKIKLPQANQVNVKLTIVEITKDFTENIGL 205
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ S++G + + S T++HA+ + LAEP
Sbjct: 206 DWNSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEP 246
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
L+ +SG+ ASF GG+ + + + + +
Sbjct: 247 NLSVLSGEYASFLVGGEIPIVSTNQNGISVEL 278
>gi|224418841|ref|ZP_03656847.1| putative type II secretion system D [Helicobacter canadensis MIT
98-5491]
gi|253828170|ref|ZP_04871055.1| secretion system protein [Helicobacter canadensis MIT 98-5491]
gi|253511576|gb|EES90235.1| secretion system protein [Helicobacter canadensis MIT 98-5491]
Length = 496
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 45/280 (16%), Positives = 97/280 (34%), Gaps = 34/280 (12%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSK 228
+ + L+ + QV + V I + + G G+S G +
Sbjct: 208 ESYIQSLHQRLQKQVLIDVHILSITHNNTNTTGINWDELYNLQNLIIPAFGEGASFGGNG 267
Query: 229 SFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQS 284
G V + G ++ ++ S ++ LE + +++ P + ++ Q
Sbjct: 268 EVGNTSGINIVGQKGVSNLHYGINIFSQGLSLNRIIEFLESYGKVESISNPKVLTLNNQP 327
Query: 285 ASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
A + G Q+ + + + GV+L TP ++ I L+I
Sbjct: 328 AMISVGDILRYQKNTIYQNTNAQTTLTNTDNEYPSLFAGVLLDITP-LVFGEEIMLKINP 386
Query: 335 EVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+++ P+ + + V + + ++L GL+ + + IP+L
Sbjct: 387 SITKTKENRTEIPNTAFETPPNLTTNQLSSIVSVKNNQKVILGGLISKNFATKENKIPIL 446
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
IP++ LF S+ EI P +++ L
Sbjct: 447 GSIPLIKPLFSYSQEVENTEEIVFIIEPKIIQAQDSISLE 486
>gi|77458214|ref|YP_347719.1| type II and III secretion system protein [Pseudomonas fluorescens
Pf0-1]
gi|77382217|gb|ABA73730.1| putative general secretion pathway protein D [Pseudomonas
fluorescens Pf0-1]
Length = 615
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 65/424 (15%), Positives = 146/424 (34%), Gaps = 54/424 (12%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
P E A + + + ++ +K + + + V D D V +
Sbjct: 183 PVTLEFRDANLKTIFEVLSQVAGLNFIFDKDLRPDMK---ATIFVRDVRIEDAVQLLLQQ 239
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLD--ILIERDIAHLEM-----TLRRFIADSNIRVE 139
L K V + +++ +++ + ++ + ++ ++ + ++ V+
Sbjct: 240 NQLHQKVVNENTLLIFPDSPQKLKDYQELVMRTFYLTSIDANTALNMIKTMLKTRDVFVD 299
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+T+ + ++ +++ ++ + + + + +
Sbjct: 300 ERLNTLTMRDTEDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATQRI-------------- 345
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
+G Q T S + + + + S +
Sbjct: 346 -----------LDLGLQWPNTFGVVNSDGSAVT-----ILDQLKGINSSRISISPSPQAK 389
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDYG 313
++A + I TLA P + + + A G + + SVT D G
Sbjct: 390 INA--QDNDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVG 447
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSGGTIVL 370
+ L PTV + ++I EVS R A T++ L G T +L
Sbjct: 448 LKLEVQPTVHLNNEVAIKIALEVSNATPLEPTRQGTIPVQVDTRNAQTSLRLHDGETQIL 507
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV---AMRDL 427
AGL+++D IP L IP LG LF +++ ++E+ ++ TP +V+ + + D+
Sbjct: 508 AGLMRNDHGATGNKIPGLGDIPGLGRLFGSNKDTIGKSELVLSITPRIVRNLPYQSPSDM 567
Query: 428 SRPD 431
P
Sbjct: 568 EFPT 571
>gi|253688577|ref|YP_003017767.1| type III secretion outer membrane pore, YscC/HrcC family
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251755155|gb|ACT13231.1| type III secretion outer membrane pore, YscC/HrcC family
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 689
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 63/452 (13%), Positives = 135/452 (29%), Gaps = 37/452 (8%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
L A+ + V+ + G I + N + + + V++
Sbjct: 144 ALSGIGLLDARFGWGELPEEGVVLV----TGPQAYIDLIRNFSQQREKQDERRKVMIFPL 199
Query: 75 TKADVVVHS----PRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLR 128
A V + + + + G A ++ L+ + +R
Sbjct: 200 RYASVSDRTLQYRDQKVTI----PGVATILNELMDGQRAAPAGASGPMPVQPDTGMEAMR 255
Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
R+ ++ + S + ++ + +++++ +
Sbjct: 256 DSTRSLMTRLATRNNPGRSGDASSRVTLSGKISADVRNNALLIRDDEKRRAEYQQLVDHI 315
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
++ V + I +V R L ++ + + FVS
Sbjct: 316 DVPQNL-VNIDAIILDVDRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-------- 366
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
D F + ALE +A P++ + Q A +
Sbjct: 367 ---DFKRFFADIQALEGEGTASIVANPSVLTLENQPAIVDFSRTAFITAT--GERVADIQ 421
Query: 309 THDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGG 366
G L TP V+ G + +++ ++ + + S R T +
Sbjct: 422 PVTAGTSLQVTPRVVGEGAQRSIQLVIDIEDGQVETGREGEASGVKRGTVSTQALIGENR 481
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+VL G ++ IP+L IP+LG LF ++R E TP LV D
Sbjct: 482 ALVLGGFHVEESGDRDRRIPILGDIPLLGKLFTSTRHEVSRRERLFILTPHLV-----GD 536
Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
+ P + S + + +N++ +
Sbjct: 537 QTDPTRYVSSANRQQ--LNGAMNRVAQRNGKT 566
>gi|257487241|ref|ZP_05641282.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|238577781|gb|ACR46692.1| HrcC [Pseudomonas syringae pv. tabaci]
gi|331009145|gb|EGH89201.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 699
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 47/265 (17%), Positives = 88/265 (33%), Gaps = 16/265 (6%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R +K++ L+++ + + + I ++ R+ L ++ + +
Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
S G + + G S + + F LHALE + + P++
Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSIL 393
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A S ++ G L P L ++ L + E
Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ I PS R T + G++V+ G + IPLL IP +G
Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511
Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
LF++ + E TP L+
Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536
>gi|313200626|ref|YP_004039284.1| type II and iii secretion system protein [Methylovorus sp. MP688]
gi|312439942|gb|ADQ84048.1| type II and III secretion system protein [Methylovorus sp. MP688]
Length = 645
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 59/353 (16%), Positives = 133/353 (37%), Gaps = 32/353 (9%)
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V + T+ ++ + + + L + ++ + ++ ++
Sbjct: 254 KVLNDNTLMIYP-------LSRSQEYQEMYVRSFYLGNTEAKKAMNMIKTVVKSKDVYID 306
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+T+V+ I+ +++ + + + +++ + + I V++
Sbjct: 307 EKLNTLVMRDTPEAIRTAEKLIMSQDMAEPEVVLEVEVLEINRRSLEAIGIRYPSAVSV- 365
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
+ G + + + S GV
Sbjct: 366 ------------------GVQGRDTVNGTTTLSPGELTVRELKNFNSDLGVFSISDPVLA 407
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVL 316
L+ L++ T LA P + + + A G + T +++ + SV+ + G+ L
Sbjct: 408 LNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLTSIANSTGFVSQSVSYIEVGIKL 467
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
PTVL + +++ EVS + + R A+T + L +G T VLAGL
Sbjct: 468 DVEPTVLLNDEVSIKVGLEVSNQTDKITSSSGTVTYTIGTRNANTMLRLKNGETQVLAGL 527
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
L+DD Q++ +P L+ +P++G LF + +R + EI + TP ++ + D
Sbjct: 528 LRDDEQKISNKVPGLANLPLIGKLFTDRNTDRTKKEIALLITPRIISNITPAD 580
>gi|312881261|ref|ZP_07741059.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309371153|gb|EFP98607.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 489
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 17/246 (6%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
++ L+++ + + + VTI +V Q+G S G S SF S
Sbjct: 252 SLIKQLDVS-PEMIEVSVTIIDVDTSDFNQLGIDWSAAAKIGGGSISFNQG------SMS 304
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
D + + +F L+ALE+ + + L+ P++ ++ A K
Sbjct: 305 SDNFSTVIGNTGNFMVRLNALEQNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKV--EGE 362
Query: 303 GATSVTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGV-----NAGDMPSYRVR 354
+ + G +L TP +++ R+ L + + + +P
Sbjct: 363 KVAKLESVTTGSLLRVTPRIVNEKHHQRVMLSLNIQDGQQTGQQKKAIGTNDALPQVENS 422
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ T L +G +++L G ++D + ++ IPLL IP+LG LFR++ + +
Sbjct: 423 EIATQATLKTGESLLLGGFVQDKNKTVENKIPLLGDIPLLGGLFRSTNHSTQSVMRLFLI 482
Query: 415 TPFLVK 420
VK
Sbjct: 483 KAEPVK 488
>gi|289623690|ref|ZP_06456644.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647636|ref|ZP_06478979.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298485943|ref|ZP_07004018.1| type III secretion system outer membrane pore protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|37931591|gb|AAP72286.1| HrcC [Pseudomonas savastanoi]
gi|298159529|gb|EFI00575.1| type III secretion system outer membrane pore protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|330871294|gb|EGH06003.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 699
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 47/265 (17%), Positives = 88/265 (33%), Gaps = 16/265 (6%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R +K++ L+++ + + + I ++ R+ L ++ + +
Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
S G + + G S + + F LHALE + + P++
Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSIL 393
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A S ++ G L P L ++ L + E
Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ I PS R T + G++V+ G + IPLL IP +G
Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511
Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
LF++ + E TP L+
Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536
>gi|33599773|ref|NP_887333.1| putative type II secretion system protein [Bordetella
bronchiseptica RB50]
gi|33567370|emb|CAE31283.1| putative type II secretion system protein [Bordetella
bronchiseptica RB50]
Length = 545
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 48/281 (17%), Positives = 97/281 (34%), Gaps = 41/281 (14%)
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------- 232
+ ++++ Q+ ++ + ++ + + G ++ + A
Sbjct: 265 AVEELIRRNQATIRRQIQVEAQLIDIELNDGFEFGVDWNLLTNHLSGRYGSGAITANTPA 324
Query: 233 -------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
+ + + SF L+AL +++ L+ PT+
Sbjct: 325 GTQPGSGLLPRSINIPAQVIGSAAGVGGGIGFANDSFSVALNALRSFGSVKVLSNPTVRV 384
Query: 280 ISGQSASFTSGGQHLYKTVSSST------------GATSVTTHDYGVVLHFTPTVLSPGR 327
+G A + G Y T S+T + GVV+ P + GR
Sbjct: 385 RNGVPAYLSVGANVRYVTEISTTFNNIGGGSSNSSSDVQTDSLFSGVVVGVAPFIHEDGR 444
Query: 328 IGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
+ L + ++ N+ +P + TT+ L +G T+VL GL+
Sbjct: 445 VELFVHPMQTQVQPQSLALVDVGNGNSVTLPIINTKSITTTLNLNNGDTVVLGGLIDQQF 504
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G+P LS IP G LF N + + E+ I ++
Sbjct: 505 TNANKGLPGLSDIPGAGVLFDNRSDSHKSRELVIILRVRVI 545
>gi|163802024|ref|ZP_02195920.1| putative type III secretion protein YscC [Vibrio sp. AND4]
gi|159174165|gb|EDP58973.1| putative type III secretion protein YscC [Vibrio sp. AND4]
Length = 623
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 61/307 (19%), Positives = 110/307 (35%), Gaps = 35/307 (11%)
Query: 146 VLHG---MVRTIQDSQRA-VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------- 194
VL G ++T A + T + A+ ++ +N + +
Sbjct: 222 VLSGVQTQIKTTNQGDEAGANTTATTSKNVSVHGGASVEAEPGLNAIIVRDTQARLPLYH 281
Query: 195 ---------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKS---FAADFGGKFVS 240
Q ++V +I ++ + L Q+G + S D G V+
Sbjct: 282 KLVAQLDQPQSRIEVALSIVDISANDLSQLGIDWRAGIGAGNNSVLDIKTTGDVAGGDVT 341
Query: 241 EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
G + K +LD + + LE + + ++ PTL A + K
Sbjct: 342 LGSGQTFKSLLDVTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKL 401
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYR 352
+ T A + YG +L P ++ I L + E + D+PS R
Sbjct: 402 IGKETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSIR 459
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
+ T + G ++++ G+ +D+I +PLL IP LGALFR++ T
Sbjct: 460 KTEISTLATVKQGQSLLIGGVYRDEISHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRMF 519
Query: 413 AATPFLV 419
P +V
Sbjct: 520 IIEPRIV 526
>gi|196232588|ref|ZP_03131440.1| type II and III secretion system protein [Chthoniobacter flavus
Ellin428]
gi|196223350|gb|EDY17868.1| type II and III secretion system protein [Chthoniobacter flavus
Ellin428]
Length = 880
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 68/377 (18%), Positives = 128/377 (33%), Gaps = 110/377 (29%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
A+ + ++ Q +++ G QV ++ E+++ LK++ F +
Sbjct: 480 AIYIVKSSRLIVRNTQDQLDLVDTIISSGGGQGPVQVEIESKFVEIQQTNLKELSFDWLL 539
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD----------------------------------- 244
++ +K+ G + +
Sbjct: 540 GQFNAPATKNVFLGGGTSGTAPALNPSDFPFVNGGVPVGNNPLTAGNRSGNLAISANAID 599
Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
++ GV F+ V+ AL + + L+ P +T SGQ A
Sbjct: 600 ALLFPISGSSQVAPAIGAISGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRAVIE 659
Query: 289 SGGQHLYKTVSSS-----------------------------TGATSVTTHDYGVVLHFT 319
+ Y T + T T+ T + GV L
Sbjct: 660 IIREFRYPTEFTPPQIPQTFGNTGAGILGGGAATTGSFPVTPTTPTAFETRNTGVTLEVE 719
Query: 320 PTVLSPG-RIGLRIQTEV-------------------------SEPVIGVNAGDMPSYRV 353
P + G I L + +V ++ VI N + P +
Sbjct: 720 PVIGPDGYTIDLNLVPQVVEFEGFINYGSPITSSVTNPITGVSTQAVITPNVINQPIFST 779
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
RK T+V + G T+VL GL+++D+Q++++ +P++ IPI+G LFR+S + + I
Sbjct: 780 RKVTTSVSVYDGSTVVLGGLIREDVQKVEDKVPIIGDIPIVGRLFRSSVDQHIKRNLIIF 839
Query: 414 ATPFLV----KPVAMRD 426
T L+ +PV D
Sbjct: 840 VTARLINAAGEPVRAED 856
>gi|238023720|ref|YP_002907952.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia glumae BGR1]
gi|237878385|gb|ACR30717.1| Type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia glumae BGR1]
Length = 605
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 49/276 (17%), Positives = 92/276 (33%), Gaps = 31/276 (11%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ ++ L++ V ++ I E+ + L+QIG GS
Sbjct: 332 DTPDRVGQYEDLIRQLDVR-PQIVEIQAHIIEIDDNTLQQIGVDWRAHGSHLDFQTGNGQ 390
Query: 233 DFGGKFVS------------------------EGGDFSVKGVLDRFSFETVLHALERATA 268
F + G S ++AL+ +
Sbjct: 391 AAQNSFSTGQLNPTFGSVQQAGPGSTIVNATPAGAAISAVVGGAGRYLLASVNALQSNSK 450
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-- 326
+ A P + + A+ + + + ++ + + GV L P ++
Sbjct: 451 AKIDATPLVATLDNVEATMDNTTKFYVRVQGYTSAD--LYSVSTGVSLRVLPLIVHDRDG 508
Query: 327 -RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
RI L + E ++P + +T + G ++++AG D G+
Sbjct: 509 TRIKLSVHIENGSLT-QQQVDNIPVITTSQINTQAFVGEGESLLIAGFTTDKTANGVTGV 567
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
P LSKIP+LGALFRN+ E TP ++
Sbjct: 568 PFLSKIPLLGALFRNNSDQHNHNETVFLLTPRIIDA 603
>gi|325983467|ref|YP_004295869.1| type II and III secretion system protein [Nitrosomonas sp. AL212]
gi|325532986|gb|ADZ27707.1| type II and III secretion system protein [Nitrosomonas sp. AL212]
Length = 756
Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats.
Identities = 79/430 (18%), Positives = 149/430 (34%), Gaps = 56/430 (13%)
Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD------------ 78
E A + + + I+ +K ++ + + V D T D
Sbjct: 194 EFKDADMRSVFEIMSRTAGINFVFDKD--IRQDGKIS-IFVRDNTIEDILKLILTTNQLA 250
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V + ++ ++ + L + + + I D+ + +R + +I V
Sbjct: 251 YKVLNSNSLLIYPNTPAK----LKDYQELVVRSFQIAHT-DVKQMVAMVRGIVKAKDIYV 305
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ ++ + I+ ++R V L N L E +V L
Sbjct: 306 NEQLNLFIMRDTLEAIRLTERIVSL----------------------NDL---AEPEVVL 340
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
V I E+ R +G + + +S+ +K + E
Sbjct: 341 DVAILEISRANTFLLGPNFP-QSLQFNYAGNAVGGAPAALISQFNMPGLKSF--GMTSEA 397
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-----TTHDYG 313
+ + + LA P + + + A G + + T + G S+ T D G
Sbjct: 398 KIDFMHNLSIGDVLANPRIRVANREKAKIHVGEKRPFFTANVQPGINSIVTSTPTFIDLG 457
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVL 370
V L P + S + ++I EVS V+ P R A+T + + G T VL
Sbjct: 458 VKLDVEPRIGSNNDVTMKITLEVSSSTQNVSGPGGATAPLVVTRNAETLLTVKDGETQVL 517
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
AGL++D +G+ L IP L LF N R + E+ + TP +V+ +
Sbjct: 518 AGLIQDSDTTNVKGLAGLLNIPGLDRLFSNQDVRRSKNEVVLLITPRIVRNLPNPTNQEN 577
Query: 431 DDHYSVEDDA 440
+ H+ +A
Sbjct: 578 EYHFGTASEA 587
>gi|182679972|ref|YP_001834118.1| general secretion pathway protein D [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182635855|gb|ACB96629.1| general secretion pathway protein D [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 803
Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats.
Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 9/239 (3%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--FSVK 248
QV ++VT+AEV G Q + S+ +A +
Sbjct: 542 RPPVQVEIEVTVAEVTLTDALNYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNL 601
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--- 305
+ + V++AL T ++ L+ P+L + Q A G Q + +++ T
Sbjct: 602 MIGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANP 661
Query: 306 ----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
SV D G++L+ P V + G + L I+ ++S P+ R+ +T+
Sbjct: 662 AIVNSVNYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIA 721
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+P+G T++LAGL+++ + G+P++SKI L L N + TE+ + P +++
Sbjct: 722 IPNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILR 780
>gi|197286852|ref|YP_002152724.1| hypothetical protein PMI3025 [Proteus mirabilis HI4320]
gi|227354961|ref|ZP_03839372.1| competence protein E [Proteus mirabilis ATCC 29906]
gi|194684339|emb|CAR45956.1| putative exported protein [Proteus mirabilis HI4320]
gi|227164748|gb|EEI49595.1| competence protein E [Proteus mirabilis ATCC 29906]
Length = 371
Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats.
Identities = 59/318 (18%), Positives = 106/318 (33%), Gaps = 32/318 (10%)
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
R V V+ + +G I ++ S S + ++ +
Sbjct: 60 HRIYPLQYADVTTVAQQLTNYG----ISLLSDHGRIAIDKDSNSLSIIDTEKAHTEISDW 115
Query: 188 LNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGK 237
L I QV + I +D L ++G Q + G+S+ +
Sbjct: 116 LKIKETPQQQVHITAHIISSSQDALNELGTQWGLLNMKSANLEGTSNNTTTPHNIASAPL 175
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIR--------------TLAEPTLTAISGQ 283
++ + + + +A P LTA +
Sbjct: 176 TAPSLAALALHQKTKNPLHYIAFNIARINSRLLELELSALEQEKQLAIIASPRLTAAHEK 235
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342
+AS G + VS V + + + TP + +I L ++ + P I
Sbjct: 236 TASIKQGTEIP--YVSRDNDTIRVEFKEAVLGMEVTPIIQRSNKIRLLLKISQNTPGIAL 293
Query: 343 -VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ S ++ T V + G T++L G+ + QQ IP LS +P+LG LF +
Sbjct: 294 VQGGSEHLSIDKQEIMTEVTIHDGETLMLGGIFQQKQQQHAAKIPFLSSLPLLGILFSHK 353
Query: 402 RFNREETEIFIAATPFLV 419
R E+ I TP L+
Sbjct: 354 RDQHSRHELVIFITPKLI 371
>gi|29840703|ref|NP_829809.1| general secretion pathway protein D [Chlamydophila caviae GPIC]
gi|29835053|gb|AAP05687.1| general secretion pathway protein D [Chlamydophila caviae GPIC]
Length = 753
Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats.
Identities = 46/238 (19%), Positives = 94/238 (39%), Gaps = 5/238 (2%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ V ++V + E + ++ G G S + + E G
Sbjct: 461 KKMVRIEVLLFERKLSNQRKAGLNLLRLGEEVCKKSSMGISWASSGILEFLFKGSTGASL 520
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
++ L +R A P++ ++ A + VS+ Y
Sbjct: 521 VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSADKEKAQYNRAQY 579
Query: 313 GVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
G+++ P + G+ + ++T+++ G NA + P R V +P G T++
Sbjct: 580 GIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVI 639
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRD 426
+ GL + ++GIP L +IP +G LF + + +TE+F+ TP ++ P ++
Sbjct: 640 IGGLRCKHVSDSQDGIPFLGEIPGVGKLFGMNSTSDSQTEMFVFITPKILDNPAEKKE 697
>gi|284007632|emb|CBA73278.1| type III secretion outer membrane protein YscC,HrcC,mxiD,InvG,SsaC
[Arsenophonus nasoniae]
Length = 488
Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats.
Identities = 44/228 (19%), Positives = 93/228 (40%), Gaps = 12/228 (5%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
+ + V+I +V Q+G S + G + SF + G D +
Sbjct: 261 APTMIEVSVSIIDVDASDFNQLGIDWSASAKIGGGTISFNQG------TSGSDNFSTVIG 314
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ +F L+ALE+ + + L+ P++ ++ A K + +
Sbjct: 315 NTGNFMVRLNALEKVSKAKILSRPSVVTLNNVQAVLDKNITFYTKL--QGDKVAKLESVT 372
Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367
G +L TP ++ ++ L + E + +N + +P + + T L +G +
Sbjct: 373 AGSLLRVTPRLIDSNGRKKVMLSLNIEDGQQTKAINDSEPLPQVQNSEIATQATLNTGES 432
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
++L G ++D Q ++ IPLL +P++G LFR+ +++
Sbjct: 433 LLLGGFVQDKDQTVQNKIPLLGDLPLIGGLFRSEDRSKQSVIRLFLIK 480
>gi|260221518|emb|CBA30162.1| hypothetical protein Csp_C22170 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 520
Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats.
Identities = 66/356 (18%), Positives = 119/356 (33%), Gaps = 53/356 (14%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
++V +G R++ S +A L+ + + R K + + E QV L+ +
Sbjct: 171 SLVGNGEGRSVVASPQAGILAVRAMPEELRQV------DKFLKATQASVERQVMLEAKVV 224
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------------GGD 244
EV Q G + + G + G
Sbjct: 225 EVELRDGYQSGVNWGAFNNDGSTQVAAGVIGSGVTSTNAFVQGTTTINGAVAFPSVATGG 284
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302
L F VL LE ++TL+ P + ++ Q A G + T S
Sbjct: 285 GLFGLALATSQFGAVLGFLETQGDVQTLSSPRVATLNNQKAVLKVGTDEFFVTNVSGGTN 344
Query: 303 --------------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNA 345
++T G+ L TP + + L + V+E ++
Sbjct: 345 SSSGTSSSTTTSTLPTVTLTPFFSGISLDVTPQIDDGVNVTLHVHPSLTTVTEKSKQIDL 404
Query: 346 GDMPSYR-------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G +++ V + DT V + G + + GL++ + + GIP + +P LGALF
Sbjct: 405 GSAGNFKLPLASSAVNETDTLVRIQDGSIVAIGGLMQLESSRNASGIPGTTSMPGLGALF 464
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
N + E+ + P +++ D D RV ++ GP
Sbjct: 465 GNRATQGRKKEVIVLIKPTIIR--TAADWEAQGRRARAAIDDMDATRARVIQLDGP 518
>gi|253998552|ref|YP_003050615.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
gi|253985231|gb|ACT50088.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
Length = 650
Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats.
Identities = 76/457 (16%), Positives = 165/457 (36%), Gaps = 40/457 (8%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-- 79
S K P E I I K I+ ++ + + + + D
Sbjct: 187 SAFKKPITLEFKDVPIKSVFEFISKAAGINFTYDQQM---SGEQRTSLFLRNTPIEDAIE 243
Query: 80 VVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAHLEM-----TLRRFIAD 133
V+ + + K V + +++ Q + + + E ++ +
Sbjct: 244 VILTSNQL---AKKVLNENTLMIYPLSRSQEYQEMYVRSFYLGNTEAKKAMNMIKTVVKT 300
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
++ ++ +T+V+ I+ +++ + + + +++ + + I
Sbjct: 301 KDVYIDEKLNTLVMRDTPEAIRTAEKLITSQDMAEPEVVLEVEVLEINRRSLEAIGIRYP 360
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
V++ + G + + S GV
Sbjct: 361 SAVSV-------------------GVQGRDTVNGTTTLTPGELTVRELKNFNSDLGVFSI 401
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTH 310
L+ L++ T LA P + + + A G + T +++ + SV+
Sbjct: 402 SDPVLALNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLTSIANSTGFVSQSVSYI 461
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGT 367
+ G+ L PT+L + +++ EVS + + R A+T + L +G T
Sbjct: 462 EVGIKLDVEPTILLNDDVSIKVGLEVSNQTDKITSSSGTVTYTIGTRNANTILRLKNGET 521
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
VLAGLL+DD Q++ +P L+K+P++G LF + +R + EI + TP +V + +
Sbjct: 522 QVLAGLLRDDEQKISNRVPGLAKLPLIGKLFTDRSTDRTKKEIALLITPRIVSNITPAEA 581
Query: 428 SRPDDHYSVEDDAKAFFFNR-VNKIYGPKEASEVEGQ 463
V+ + + R VN+ +A + Q
Sbjct: 582 LYTAFPAGVDRNTGSNRNGRQVNESPAIAQAPLIPQQ 618
>gi|260778653|ref|ZP_05887545.1| type III secretion system outer membrane pore YscC [Vibrio
coralliilyticus ATCC BAA-450]
gi|260604817|gb|EEX31112.1| type III secretion system outer membrane pore YscC [Vibrio
coralliilyticus ATCC BAA-450]
Length = 484
Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 12/228 (5%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
+ + VTI +V Q+G S G S +F S D +
Sbjct: 259 TPTMIEVSVTIIDVDTSDFNQLGIDWSAAAKFGGGSVTFNQG------SLSSDNFSTVIG 312
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ +F L+ALE+ + + L+ P++ ++ A K + +
Sbjct: 313 NTGNFMVRLNALEQNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKI--EGEKVAKLESVT 370
Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGT 367
G +L TP +++ ++ L + + + V++ +P + T L +G +
Sbjct: 371 TGSLLRVTPRLVNENNFKKVMLSLNIQDGQQAKPVSSKDPLPQVENSEIATQATLKTGES 430
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
++L G ++D ++ IPLL IP+LG LFR++ +++
Sbjct: 431 LLLGGFVQDKDHTVENKIPLLGDIPLLGGLFRSTDHSKQSVMRLFLIK 478
>gi|325109742|ref|YP_004270810.1| type II and III secretion system protein [Planctomyces brasiliensis
DSM 5305]
gi|324970010|gb|ADY60788.1| type II and III secretion system protein [Planctomyces brasiliensis
DSM 5305]
Length = 1315
Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats.
Identities = 56/314 (17%), Positives = 109/314 (34%), Gaps = 45/314 (14%)
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRD 208
V ++ R + + +S S ++++ L++ +V ++ + EV D
Sbjct: 863 VTNLEIMDREIIVVPETVSNSLLISATPRYFEEILTLVHRLDEKPPEVVIQALLVEVELD 922
Query: 209 ILKQIGFQHS----------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ G Q ++ + A+ DF++ + +
Sbjct: 923 NDDEFGVQLGLQDSVLFDRSIDNTPGYNFNNQPLGRDTTANPSAVGTQALSDFAMGRLNN 982
Query: 253 RFSF------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
F ++ AL ++ L+ PT+ + Q A G Q +
Sbjct: 983 SLGFGGLVLAASSESVSVLIRALSAKRNVQILSRPTIRTLDNQLAQILVGQQVPIVDGVT 1042
Query: 301 STGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----------IGVNA 345
TG + G++L TP + G I + S +
Sbjct: 1043 ITGTIGIATPQIVQQQVGIILAVTPRISPDGSIVMETVATKSSLSDEGVPIFTDIETGSV 1102
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+ P + A TV +P+G T+VL G++ D + +P + +PILG FR +
Sbjct: 1103 IESPIINLTTAQATVSVPNGQTVVLGGMITKDEVSFRRNVPWIGDLPILGIPFRYEGKST 1162
Query: 406 EETEIFIAATPFLV 419
TE+ I TP ++
Sbjct: 1163 RRTELLIFLTPRVI 1176
>gi|313667332|ref|YP_004049733.1| type II and III secretion system protein [Oceanithermus profundus
DSM 14977]
gi|313153963|gb|ADR37813.1| type II and III secretion system protein [Oceanithermus profundus
DSM 14977]
Length = 804
Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 114/359 (31%), Gaps = 20/359 (5%)
Query: 115 LIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
+ + L L + + + V G Q ++ +
Sbjct: 441 VAYHNADALARLLTQILGAQTAMPAQEVQQGQAAEGGPTPPQSVPSLKITADPQTNTLLV 500
Query: 174 NQYANSSSKKVMNLLNIAGE-DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ S + + DQV +V I EV R ++G S +
Sbjct: 501 YGPRKTVSSALEFAKKLDRPADQVVSRVWIQEVDRSAANELGINWQYATGKFAISVTEGV 560
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
GG ++ + LE+ R L + ++ + + SGG+
Sbjct: 561 LTGGYDSGASALSALAQS---------IRLLEKTGRSRRLLDANTLTLNAEPTTLLSGGK 611
Query: 293 HLYK--------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
L TG T +YG+ L TP G I L I T V
Sbjct: 612 LLLPKQGDTGNVDGQEGTGGTGYEEFNYGLNLELTPYTSPDGTITLDIATTVGSLPQSGP 671
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
A++ + + G ++L G++ ++ + G+P+L IP++GALFR +
Sbjct: 672 TPGSVLIPQSYAESRIRIKDGQAVILGGVISNEDRNDVSGVPILKDIPVIGALFRTTERV 731
Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
+ E + I ++K + ++ + + V + G E +
Sbjct: 732 QSERILLIIVQSHILKAESDGAGGVELPESALPS-GEYDRSSEVGEGAGMPEGALPTEP 789
>gi|328951048|ref|YP_004368383.1| type II and III secretion system protein [Marinithermus
hydrothermalis DSM 14884]
gi|328451372|gb|AEB12273.1| type II and III secretion system protein [Marinithermus
hydrothermalis DSM 14884]
Length = 523
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 69/426 (16%), Positives = 137/426 (32%), Gaps = 51/426 (11%)
Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-----T 75
P + + P+ + I + G +S+ + +++ + Q + V
Sbjct: 126 PVLRRFYPVPTGDPKQIADFLEQEISGLSVSVVPGQNVLVVRGAEAQQIEVQTLLNQLQK 185
Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
A+ RT L G+ +L G Q + + ++
Sbjct: 186 PAEAPPLLQRTFQLSYAKAGELAKVLTEALGAQDVIDRLAGLENVDVSLTPPEDGSPTKP 245
Query: 136 IRV--EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
I + + ++T+++ G + + E + + +
Sbjct: 246 INIVADERTNTLIVTGTA-------EQIAVVEALIPKLDKP------------------V 280
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV LKV + EV + +G + + + F + L
Sbjct: 281 QQVQLKVRVQEVDSQVFNNLGLKWDSLSGGNLIASVLDNGLNLIFDA-------TRSLAS 333
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----------T 302
+ L ALE+ R +++ L AS Q K
Sbjct: 334 LNIVATLDALEKQNLARRVSDANLIIEDNFGASDEDLRQTGAKGAELKAGAKLLLPIRIG 393
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
G V D G+ L P + + +I L + T+ + + + + +
Sbjct: 394 GEIEVREFDVGLTLRLRPQITADRQILLEVFTQ-TGGDPQSGPEGSILIPQKSTLSKLRI 452
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
G T+VL GL++ + + + +P L IPILG LFR + +TE+ + T +V
Sbjct: 453 KDGQTVVLGGLIERTVNKSENKVPFLGDIPILGMLFRQTSNEVRDTELLVVITANIVDNA 512
Query: 423 AMRDLS 428
+ S
Sbjct: 513 PSAEAS 518
>gi|330963696|gb|EGH63956.1| type III secretion component [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 174
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/187 (35%), Positives = 93/187 (49%), Gaps = 23/187 (12%)
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAG 346
G + V + + YGV L F+PT+L GRI L+++ EVS + VN
Sbjct: 6 GSEVAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTSTLDVNGY 65
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG LFR+ RF R
Sbjct: 66 QVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRSKRFQRN 125
Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
ETE+ I TP+LV+PV R ++ P D + G
Sbjct: 126 ETELVILITPYLVEPVKARVVATPLDKQRAAS-------------------TASAGPRSG 166
Query: 467 GAIGFIY 473
GA GF
Sbjct: 167 GAFGFYM 173
>gi|224584676|ref|YP_002638474.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224469203|gb|ACN47033.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
Length = 532
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 127 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRTY----NLRDQKIVI---- 174
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 175 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 228
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 229 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 287
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + S LD F ++ALE
Sbjct: 288 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 335
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 336 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 393
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 394 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 453
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 454 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 496
>gi|313202169|ref|YP_004040827.1| type IV pilus secretin pilq [Methylovorus sp. MP688]
gi|312441485|gb|ADQ85591.1| type IV pilus secretin PilQ [Methylovorus sp. MP688]
Length = 714
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 52/283 (18%), Positives = 103/283 (36%), Gaps = 48/283 (16%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
++++N +I + QV ++ + K +G + +T S+ G +
Sbjct: 430 QQIINKTDIPVK-QVMIESRLVIADEKFGKSLGARFGMTQQSADGRNVIGGTLGNRITEV 488
Query: 242 GGDFSVKGVLDRFSFETVL---------------------HA------------------ 262
D ++ + +T +A
Sbjct: 489 SSDGTITQGTHNGTIQTATTGSTATSSDGEPDLMSNLPVSNAYGNLAFTLLRLPAGLLLN 548
Query: 263 -----LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
LE + ++ P +T + + A G + Y SS+GATSV D + L
Sbjct: 549 LELSALETDKRGKVVSSPRVTTANQKKAQIQQGTKIPYLRA-SSSGATSVQFVDATLSLE 607
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
TP V +I + + + + +G +PS + DT V + +G T VL G+ +
Sbjct: 608 VTPQVTPDDKIIMDLT--IKKDRVGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQT 665
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + +P +P +G F+ ++TE+ I TP ++
Sbjct: 666 ERNDVDKVPFFGDLPFVGNAFKRRVRQNDKTELLIFITPKIMD 708
>gi|117924415|ref|YP_865032.1| type II and III secretion system protein [Magnetococcus sp. MC-1]
gi|117608171|gb|ABK43626.1| type II and III secretion system protein [Magnetococcus sp. MC-1]
Length = 802
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/333 (19%), Positives = 115/333 (34%), Gaps = 35/333 (10%)
Query: 141 VSDTVVLHGMVRTIQDS---QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
L+G + A +L + ++ +K++ QV
Sbjct: 199 SGSNTTLNGDRSSALHHLDQPNAGDLDRVLVFYHPDQRHEVDRLQKIIKDSIDHPAPQVY 258
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--- 254
++ + EV + LK++G S S S + GG+
Sbjct: 259 VEGMVLEVSDEGLKELGASLSSITRGGVNSLSLGVLSPVAVSAGGGNVFSFTRDGTNAAV 318
Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------- 305
+ ++AL + L+ P++ IS + A+ Y + +ST A
Sbjct: 319 NNALIKINALVSKGEAQILSRPSILTISNRQATIQVVDVVQYPVLQNSTDAVGNTILSSY 378
Query: 306 SVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNA----------GDMPSYRVR 354
S G+ L+ P V + G + L I V V + G P R
Sbjct: 379 SFEAVRPGITLNLRPRVTASGHEVNLEIDVTVESLVTANDGDVYNNSGTLLGTKPGSSSR 438
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIP----LLSKIPILGALFRNSRFNREETEI 410
+ T +P ++ GL+ D + IP LL+ IPILGAL ++ + E+
Sbjct: 439 RVQTFARIPDRMPFIIGGLVSTDREMTSNRIPVVGDLLADIPILGALVGSTLRQYTKREV 498
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
I TP ++ ++ +V D++ F
Sbjct: 499 IIVLTPHILHDDDESIVA-----TNVPKDSEFF 526
>gi|303251572|ref|ZP_07337746.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307252115|ref|ZP_07534014.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302649570|gb|EFL79752.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306860415|gb|EFM92429.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 221
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 5/199 (2%)
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
+++ + ++ AL+ + LAEP ++ +SG++A GG+ + G SV
Sbjct: 2 ALVNSNNLNVLISALDNQNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVL 60
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGG 366
++G+ L V RI L + VS + +P + R++ +T E+ +G
Sbjct: 61 YKEFGIKLAVGAKVQKSDRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGE 120
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+ +++GLL + + +P+L IPILGA FRN+ +RE E+ + AT LVKPV
Sbjct: 121 SFIISGLLNKQDIEGIKKVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQ 180
Query: 427 LSRPDDHYSVEDDAKAFFF 445
+ P + + FF
Sbjct: 181 VLYPT--FENTGTMERFFN 197
>gi|289524045|ref|ZP_06440899.1| putative bacterial type II/III secretion system short domain
protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289502701|gb|EFD23865.1| putative bacterial type II/III secretion system short domain
protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 589
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 70/412 (16%), Positives = 124/412 (30%), Gaps = 59/412 (14%)
Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP---TKA 77
P P E + + K I+I ++ + P + V D
Sbjct: 175 PMSLSTPVTLELRDTELKDVLRMLAKFMGINIIIDPSV----PPTTMTLSVKDAPLREVL 230
Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHD-----GKQMLNLDILIERDIAHLEMTLRRFIA 132
V+ Y +G + + G + + D + L+ I
Sbjct: 231 AYVMRMNNLKY---AMMGNTILFGTPENLGKSLGMEQTKSFKIAYADPKQVPAILQSLIG 287
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
+N+ V+ TV + G ++D ++ ++ ++ G
Sbjct: 288 ITNVAVDERLRTVYVTGRPDNLRDVEQ------------------------LLQRIDHPG 323
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG---------------- 236
QV L+ + EVR K++ S G
Sbjct: 324 R-QVMLQARLIEVRDTGRKELESIVDAVYKHWWFSYGAGGGSIGYVDSSEPENFDPDEDR 382
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+G D + + L + LA P++ + GQ AS Y
Sbjct: 383 PTSPQGVDLVDITRGTLRILDVGIRNLVESNKADILASPSVVTVDGQKASIALTTNIKYI 442
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRV 353
+ G + G L FTP V + + + EV E G ++P
Sbjct: 443 SERDDAGNPVYSEERVGPKLDFTPIVGRDDTVTINVAISTGEVVEWRPGGMGEEVPVTSS 502
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
R+ T V + +G V+ GL IP+L+ IP+LG +F+
Sbjct: 503 REVTTMVRVRNGEPFVIGGLFDRRKTDTVSKIPVLADIPLLGEIFKTRTKRD 554
>gi|288818586|ref|YP_003432934.1| general secretion pathway protein D [Hydrogenobacter thermophilus
TK-6]
gi|288787986|dbj|BAI69733.1| general secretion pathway protein D [Hydrogenobacter thermophilus
TK-6]
gi|308752177|gb|ADO45660.1| general secretion pathway protein D [Hydrogenobacter thermophilus
TK-6]
Length = 665
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/271 (21%), Positives = 112/271 (41%), Gaps = 24/271 (8%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------PSKS 229
K ++ +++ QV L T+ E+ IG + I G+ G +
Sbjct: 370 KSLIEKMDVR-RKQVLLAATVVEMSTSKALDIGVKWQIIGTQGGVSLGGGSLQDVYNAIL 428
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTAISGQSASFT 288
G + G ++ G F +L +L + + ++ P + + Q+A
Sbjct: 429 SGNFIMGVLSTAGRTVTIGGTQLFFPDLLLLFSLLESGSGFNIVSNPKVLTLDNQTAEIK 488
Query: 289 SGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVS--EP 339
G Y + + + + G+ L TPT+ +I L++Q V P
Sbjct: 489 VGQVVPYASGVKFDINGMPVITYDYKEVGLDLGVTPTISGKDLRLQINLKLQDIVDYIRP 548
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
IG + +P R+ ++ V + +G TI++ GL+ +G+P L IP LG +FR
Sbjct: 549 QIGTLSYAVPVTSNRQVNSDVVVENGQTIIIGGLVNTKTLTSTQGVPGLKDIPGLGRIFR 608
Query: 400 NSRFNREETEIFIAATPFLV-KPVAMRDLSR 429
++ +FI TP+++ KP + +++R
Sbjct: 609 RDTKTEDKVSLFIFLTPYVIEKPEELSEITR 639
>gi|195873613|ref|ZP_02697884.2| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|195633590|gb|EDX52004.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Newport
str. SL317]
Length = 514
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 63/403 (15%), Positives = 136/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + E + + L +
Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAENYAGGMSLQEAL 210
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + S LD F ++ALE
Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 317
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478
>gi|71909017|ref|YP_286604.1| type II and III secretion system protein [Dechloromonas aromatica
RCB]
gi|71848638|gb|AAZ48134.1| type II and III secretion system protein [Dechloromonas aromatica
RCB]
Length = 594
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 56/321 (17%), Positives = 124/321 (38%), Gaps = 37/321 (11%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
T +++ + +E+ + Q + ++ ++ + + QV ++ TI EV
Sbjct: 276 STFREAASVIMNAESGVITVRATQKQHERIQEFLDRVGNSARRQVLIEATIVEVTLKDGY 335
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
Q G + F + + + ++ L+ +
Sbjct: 336 QQGINWTQLAR--------GGTFSFIGDALTKNATNLTYTKGGDPNALVTMLDTFGTTKV 387
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-----------TTHDYGVVLHFTP 320
L+ P L+ ++ Q+A ++Y +V + T T+ + G+V+ TP
Sbjct: 388 LSSPRLSVMNNQTALLKVVENYVYFSVKADTTTTANVGTTTAYTTTPQSVSVGLVVSVTP 447
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPSGGTIV 369
+ + L ++ ++ V + +P R R+ ++ + + SG +
Sbjct: 448 QISDGDAVTLNVRPTITSVAREVQDPNPDLKKNSISNLVPVIRTREIESIMRVASGNIAI 507
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR---- 425
L GL++D I + +PLL +IPI G L N ++TE+ I P ++K ++
Sbjct: 508 LGGLMEDKIDYQTQRVPLLGQIPIAGELVNNRNNAAQKTELVIFLRPVVIKDASLEGDYA 567
Query: 426 --DLSRPDDH-YSVEDDAKAF 443
P+D ++ +A+ F
Sbjct: 568 NMRGFLPNDSFFAQPSEAQPF 588
>gi|284007665|emb|CBA73372.1| Type III secretion outermembrane pore forming protein
YscC,MxiD,HrcC,InvG [Arsenophonus nasoniae]
Length = 554
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 40/261 (15%), Positives = 82/261 (31%), Gaps = 24/261 (9%)
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
+ + +++N + + QV L + I ++ + ++G + S
Sbjct: 272 GSNSLLAKGSIQGIQLINEMIQRLDQPKRQVELSLWIIDIAKHEADRLGIDWQSSYHSKD 331
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ F + A+ + ++ P + A
Sbjct: 332 GNFLLNTSDISAAA-------------GIHFLAKIRAMSMEGSAHMVSRPIILTQENTPA 378
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-----IGLRIQTEVSEPV 340
F + + ++ + +G ++ P + G I L E
Sbjct: 379 IFDNSTTFYAQV--RGERIATLESATFGTMISVVPRLSPTGDEIEMVINLEDGAEKKTNS 436
Query: 341 IGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
D +P T + G ++++ G ++DI + IPLL IP +G LFR
Sbjct: 437 GETEKIDALPVINRTNISTVARVAQGDSLLIGGYTREDIDSSESKIPLLGDIPWIGGLFR 496
Query: 400 NSRFNREETEIFIAATPFLVK 420
S ++ P LVK
Sbjct: 497 FSSTTNKKMVRIFMLQPRLVK 517
>gi|104781918|ref|YP_608416.1| secretion type II protein [Pseudomonas entomophila L48]
gi|95110905|emb|CAK15621.1| Putative secretion type II protein related to gspD (secretin)
protein [Pseudomonas entomophila L48]
Length = 611
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/437 (14%), Positives = 140/437 (32%), Gaps = 71/437 (16%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV------ 80
P E A + + + I+ ++ + + + V + D V
Sbjct: 183 PVTLEFRDANLKTIFEVLAQVAGINFIFDRDLRPDMK---ATIFVREVRIEDAVALLLEQ 239
Query: 81 ------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
+ + T+ ++ + + + ++ L D L+ +
Sbjct: 240 NQLRQKIVNDNTLLVYPDSPQKTK-----DYQELVMRTFYLTSIDANTAMNMLKTMLKTR 294
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
++ V+ +T+ + ++ +++ ++ + + + +
Sbjct: 295 DVFVDERLNTLTMRDTPDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 345
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
+G Q T + + S+
Sbjct: 346 ----------------LDLGLQWPNTFGVLTSDGKSVSVLDQLRGIDSSRISI-----SP 384
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308
+ + ++A + I TLA P + + + A G + + SVT
Sbjct: 385 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 442
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365
D G+ L PTV + +++ EVS R A T++ L G
Sbjct: 443 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 502
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ +
Sbjct: 503 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 560
Query: 426 DLSRPDDHYSVEDDAKA 442
Y D +
Sbjct: 561 --------YQSPSDMEF 569
>gi|313498582|gb|ADR59948.1| Type II and III secretion system protein [Pseudomonas putida
BIRD-1]
Length = 621
Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/437 (14%), Positives = 141/437 (32%), Gaps = 71/437 (16%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P E A + + + I+ +K + + + V + D
Sbjct: 187 PVTLEFRDANLKTIFEVLSQVAGINFIFDKDLRPDLK---ATIFVREVRIEDAIALLLEQ 243
Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
+ + T+ ++ + + + ++ L D ++ +
Sbjct: 244 NQLRQKIVNDNTLMVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
++ V+ +T+ + ++ +++ ++ + + + +
Sbjct: 299 DVFVDERLNTLTMRDTPDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 349
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
+G Q T + + + + + +
Sbjct: 350 ----------------LDLGLQWPNTFGVLSDDGNPVS-----VLDQLKGINSSRISIAP 388
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308
+ + ++A + I TLA P + + + A G + + SVT
Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365
D G+ L PTV + +++ EVS R A T++ L G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ +
Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 564
Query: 426 DLSRPDDHYSVEDDAKA 442
Y D +
Sbjct: 565 --------YQSPSDMEF 573
>gi|270284835|ref|ZP_06194229.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia muridarum Nigg]
gi|270288864|ref|ZP_06195166.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia muridarum Weiss]
gi|301336215|ref|ZP_07224417.1| Type III secretion structural protein (outer membrane ring)
[Chlamydia muridarum MopnTet14]
Length = 918
Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q + G G
Sbjct: 564 INNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 623
Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
+ V + G G++
Sbjct: 624 KVAYASGLLSNTGVVDPLRNQTPPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 683
Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
+ +L AL++ + P + A Q ASF G ++T
Sbjct: 684 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 743
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + ++ D GV L T T+ + L+I+ +SE P A T
Sbjct: 744 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 802
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D + ++ G+PLLS +P++ LF + R++ I I P ++
Sbjct: 803 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVI 862
Query: 420 KPVAMRDLSRPDDHYS 435
+ + Y
Sbjct: 863 SSFEEGTVLSNSEGYR 878
>gi|71737444|ref|YP_273539.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71557997|gb|AAZ37208.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|170523102|gb|ACB20761.1| type III outer-membrane secretion protein HrcC [Pseudomonas
syringae pv. glycinea]
gi|320322961|gb|EFW79051.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329916|gb|EFW85904.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330874593|gb|EGH08742.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 699
Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats.
Identities = 47/265 (17%), Positives = 89/265 (33%), Gaps = 16/265 (6%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R +K++ L+++ + + + I ++ R+ L ++ + +
Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
S G + + G S + + F + LHALE + + P++
Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSIL 393
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A S ++ G L P L ++ L + E
Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ I PS R T + G++V+ G + IPLL IP +G
Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511
Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
LF++ + E TP L+
Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536
>gi|284008887|emb|CBA75707.1| protein transport protein HofQ [Arsenophonus nasoniae]
Length = 347
Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats.
Identities = 47/229 (20%), Positives = 85/229 (37%), Gaps = 5/229 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLD 252
QV + I R+ L ++G ++ + S + +
Sbjct: 119 QQVQITAYIINTSREALYELGIFWELSSDKINQVGISRLNIHQPAPSSIPHIAFNIAKIK 178
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
L ALE+ + +A P L A SAS G + + S + + +
Sbjct: 179 SHLLSLELSALEQENQLSIIASPRLMASHNHSASIKQGTEIP--YIIQSKNKSQIKFKEA 236
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVL 370
+ + TPT+L G++ L ++ + P N + ++ T V + G T++L
Sbjct: 237 ILGMEVTPTILRGGKVRLALKISQNTPNTSLLANTYQHIAINKQEISTQVTINHGETLIL 296
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G+ + ++ IP L+ IP G LF E+ I TP L+
Sbjct: 297 GGIFQQKKNNQQQKIPYLADIPFFGQLFTKDGKQTYHRELVIFITPQLI 345
>gi|170738269|ref|YP_001779529.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia cenocepacia MC0-3]
gi|169820457|gb|ACA95039.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia cenocepacia MC0-3]
Length = 588
Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/259 (17%), Positives = 93/259 (35%), Gaps = 26/259 (10%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------- 222
++ L++ + ++ I EV ++Q+G + S
Sbjct: 331 LIQRLDVK-PRLIEIEAHIFEVDTSSIRQLGVNWTAHNSHIDLQTGNGLGAQNTYGGTLT 389
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ + + A + + GG S + ALE + A P +T +
Sbjct: 390 QNFGNTTLAGNVTAAAMPVGGVLSAVIGNAGRYLMANVSALEEQNLAKIDASPKVTTLDN 449
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVI 341
A + Q + ++ + + GV L P V GR +++ + + +
Sbjct: 450 IEADMANQTQFFVRVSGYTSAD--LYSVSTGVSLRVLPMVVDEGGRTQIKLDVAIQDGQL 507
Query: 342 GV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
++P +T+ + G +++AG D G+P+LSKIP++G LF+
Sbjct: 508 TSRTVDNIPVISSTNINTSAFVNEGEALLIAGYKNDGRIDTTTGVPVLSKIPVIGNLFKY 567
Query: 401 SRFNREETEIFIAATPFLV 419
+ E TP ++
Sbjct: 568 TDRENTRMERLFLLTPRII 586
>gi|239814080|ref|YP_002942990.1| general secretion pathway protein D [Variovorax paradoxus S110]
gi|239800657|gb|ACS17724.1| general secretion pathway protein D [Variovorax paradoxus S110]
Length = 774
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 26/262 (9%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------ 238
QV ++ I EV G Q ++ + ++
Sbjct: 415 GRRAQVMIEALIVEVSAKKAANFGVQWQSALGNNAVIGTNSSLASANILALTQALATRDV 474
Query: 239 ----VSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
S G + + G + + + L+ P L + + A G
Sbjct: 475 ANVRPSSGLNLGIAGKIGGQYILGAIANFFNSDGDANVLSTPNLLTLDNEEAKIVIGQNV 534
Query: 294 LYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVN 344
+ T + T+V D G+ L PT+ G + + I E S +N
Sbjct: 535 PFVTGQYASTSGSVGINPFTTVERKDVGLTLRVRPTINENGTVKMTIFQETSTVDGNTIN 594
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+ P+ R +++V + GG ++L GLL DD E +P+ IP+LG LF+N
Sbjct: 595 NPNGPTTNKRSIESSVLVEDGGLVMLGGLLSDDYGNTIEKVPVAGDIPVLGNLFKNEIRT 654
Query: 405 REETEIFIAATPFLVKPVAMRD 426
R ++ + + P +++ A +
Sbjct: 655 RNKSNLMMFLRPAVMRDGASTE 676
>gi|257487974|ref|ZP_05642015.1| type III secretion component, putative [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 170
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 65/187 (34%), Positives = 92/187 (49%), Gaps = 23/187 (12%)
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAG 346
G + V + + YGV L F+PT+L GRI L+++ EVS + N
Sbjct: 2 GGEVAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGY 61
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG LFR+ RF R
Sbjct: 62 QVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRSKRFQRN 121
Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
ETE+ I TP+LV+PV R ++ P D + G
Sbjct: 122 ETELVILITPYLVEPVKDRVVATPLDKQRAAS-------------------TASAGPRSG 162
Query: 467 GAIGFIY 473
GA GF
Sbjct: 163 GAFGFYM 169
>gi|149926070|ref|ZP_01914333.1| putative type III secretion protein [Limnobacter sp. MED105]
gi|149825358|gb|EDM84569.1| putative type III secretion protein [Limnobacter sp. MED105]
Length = 530
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 54/306 (17%), Positives = 103/306 (33%), Gaps = 12/306 (3%)
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
+ I VS + + + V ++ + S + A S NL++
Sbjct: 200 LMMGERIGALPVSPSSGVKKKADDDPEKAEFVSVTADPRTNSILIRDAKSKYDYYKNLID 259
Query: 190 IAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
+ ++ + EV + L ++G + + + ++ G
Sbjct: 260 QLDRQVAMIEVEAMMVEVDQKGLNELGLEFGLLSDRFAYDFPGSGVGRPSLIAAGA---- 315
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
++D F L AL + LA PT+ SA + S V
Sbjct: 316 TSIVDPMRFMARLKALSADENAKVLARPTIVTQDNVSAYIDLSQTLYIQV--SGERVADV 373
Query: 308 TTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
G +L TP V+ RI LRI+ + +MP + T +
Sbjct: 374 IPITAGSLLQVTPRVVIDEQEERIFLRIEIQDGSLTENTQGINMPRVQNTSLSTQAVIQR 433
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVA 423
I++ G ++ + +PLL IP +G F ++ + TP L+ +P+
Sbjct: 434 EKAILIGGYNRESTEVNDYKVPLLGDIPYIGKAFTSTEKRTQTVARLFLITPRLIDRPIH 493
Query: 424 MRDLSR 429
+ +R
Sbjct: 494 DSESTR 499
>gi|16766204|ref|NP_461819.1| outer membrane secretin precursor [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|207858160|ref|YP_002244811.1| secretory protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|20141547|sp|P35672|INVG_SALTY RecName: Full=Protein invG; Flags: Precursor
gi|16421446|gb|AAL21778.1| outer membrane invasion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|206709963|emb|CAR34317.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|261248034|emb|CBG25867.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267995026|gb|ACY89911.1| outer membrane secretin precursor [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159457|emb|CBW18975.1| type III secretion system secretory apparatus [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312913916|dbj|BAJ37890.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Typhimurium
str. T000240]
gi|323131250|gb|ADX18680.1| outer membrane secretin precursor [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|326624629|gb|EGE30974.1| outer membrane secretin precursor [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|332989770|gb|AEF08753.1| outer membrane secretin precursor [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 562
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + S LD F ++ALE
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526
>gi|187251612|ref|YP_001876094.1| rcpA subunit [Elusimicrobium minutum Pei191]
gi|186971772|gb|ACC98757.1| RcpA subunit [Elusimicrobium minutum Pei191]
Length = 248
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 21/238 (8%)
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
L+ + V++ I E+ I IGF G +
Sbjct: 25 LHARKTNLVSVSADIVEISGSINSNIGFSWYNIFDF-------------AEKEIPGVLEI 71
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
+ + T L +E + L+ P + +G +A+ + GGQ + V +
Sbjct: 72 GSFERKTALTTRLRLMENEGKAQILSNPKIVTRTGTNANISVGGQIPFPEV--NNQGVGT 129
Query: 308 TTHDYGVVLHFTPTVLSP--GRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVE 361
+ DYGV+L+ PT++ I L++ EVS P + V + +PS R+ +T VE
Sbjct: 130 SMLDYGVILNVMPTIIPEQSNLINLQVNLEVSAPDYSRTVSVGSTTVPSINKRRVETQVE 189
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L SG T+V+ GL + IPLL ++P++G LFRN E+ +F+ T +V
Sbjct: 190 LHSGETLVIGGLKSSSRNVSVDRIPLLGRLPLIGLLFRNKDTLDEQRSLFLFVTVEIV 247
>gi|300771988|ref|ZP_07081859.1| type II general secretion pathway D protein [Sphingobacterium
spiritivorum ATCC 33861]
gi|300761374|gb|EFK58199.1| type II general secretion pathway D protein [Sphingobacterium
spiritivorum ATCC 33861]
Length = 624
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
V ++VT+ ++ + + G + + S S F + + + +
Sbjct: 380 PMVLIEVTLLDINKGNTVKTGIKMGVADSIPQTGGSLFPALDFTFGAGSINRFLSFLGKN 439
Query: 254 FSFET---------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301
+F L ALE + + P L+ ++G A + G + YKT + +
Sbjct: 440 NAFNLGRVTPNFYVTLSALEANKNVEMRSIPKLSTLNGHQAKLSIGSKRYYKTTTQNVIP 499
Query: 302 ------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
T + + + P + +I L+I ++S+ V V G P K
Sbjct: 500 SLQTTTVTTEQFTPVEANMNIDIKPVISGDDQITLKITVDISDFVGTVKDGQPPPTSTSK 559
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
++ + + IVL G+ + + G+PLLS+IP+L LF + + +
Sbjct: 560 FESIIRARNEDMIVLGGIERTENSSSGSGVPLLSRIPVLKWLFSSREKTTNKVVSVVFIK 619
Query: 416 PFLV 419
P ++
Sbjct: 620 PTII 623
>gi|56414850|ref|YP_151925.1| virulence secretory protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197363778|ref|YP_002143415.1| virulence secretory protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|56129107|gb|AAV78613.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197095255|emb|CAR60806.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
Length = 562
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + S LD F ++ALE
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526
>gi|197286525|ref|YP_002152397.1| type III secretion system protein [Proteus mirabilis HI4320]
gi|194684012|emb|CAR45306.1| type III secretion system protein [Proteus mirabilis HI4320]
Length = 571
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/254 (16%), Positives = 83/254 (32%), Gaps = 22/254 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV L + I ++ + +G + S + F
Sbjct: 318 KRQVELSLWIIDISKSKADSLGVNWQGSYGSGKNTFFFNTASLSAV-------------S 364
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
FSF + + AL + ++ P L A F + + S+ + +
Sbjct: 365 GFSFLSKIKALSEEGEAKMVSRPILLTQENTPAIFDNNTTFYTQI--KGERVASLESTTF 422
Query: 313 GVVLHFTPTVLSPGR-----IGLRIQTEV--SEPVIGVNAGDMPSYRVRKADTTVELPSG 365
G ++ P + + + I L E + +P T + G
Sbjct: 423 GTMISVLPRISNTNQEIEMIINLEDGAEKKSDDEDREEGIEKLPVINRTNISTVARVSEG 482
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
G++++ G ++D + + IP LS IP++G F N ++ P L+
Sbjct: 483 GSLLIGGYTREDNIKAENKIPFLSAIPLVGRAFSYQSDNNKKMVRIFMLQPRLLDKTDTH 542
Query: 426 DLSRPDDHYSVEDD 439
L +H + D
Sbjct: 543 GLDSLTEHPFLPMD 556
>gi|161615810|ref|YP_001589775.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161365174|gb|ABX68942.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 553
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 148 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 195
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 196 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 249
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 250 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 308
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + S LD F ++ALE
Sbjct: 309 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 356
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 357 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 414
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 415 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 474
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 475 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 517
>gi|220932103|ref|YP_002509011.1| type II and III secretion system protein [Halothermothrix orenii H
168]
gi|219993413|gb|ACL70016.1| type II and III secretion system protein [Halothermothrix orenii H
168]
Length = 385
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 56/254 (22%), Positives = 99/254 (38%), Gaps = 18/254 (7%)
Query: 169 SQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
+ +K++NL+ Q+ + V ++EV LK++G P
Sbjct: 145 GDMLSISAPPTKMEKIINLIKRIDKPRKQIKITVVVSEVSTKELKKLGTGFLEYREKDNP 204
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
S + D ++ + T L L+ + A+P++ + G+ A
Sbjct: 205 SLNLKYDGSSLVLNGNIF---------ENLLTRLEILQEEEKAKIHADPSIVVMDGEPAE 255
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
G+ ++ G+ L TP ++S + L +S V
Sbjct: 256 LFI-GEKQTLFITEDEEIEYFKDIKVGISLKVTPRLISKDEMILDFSPSISHFVNS---- 310
Query: 347 DMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+P VR+ DTTV + SG T V+AG+ D K+ +P L+KIP+L LF +
Sbjct: 311 KLPEIAVRENTLDTTVRVASGQTAVIAGMTLQDDYNYKKSVPGLNKIPLLRWLFTKKVND 370
Query: 405 REETEIFIAATPFL 418
+ E+ I TP +
Sbjct: 371 TGDRELLIFVTPTI 384
>gi|317061875|ref|ZP_07926360.1| general secretion pathway protein D [Fusobacterium sp. D12]
gi|313687551|gb|EFS24386.1| general secretion pathway protein D [Fusobacterium sp. D12]
Length = 419
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 20/252 (7%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGG 236
K++ ++I G+ QV + + ++ +D+ ++GF S + S G
Sbjct: 164 DKIIQEIDIEGK-QVKVYSQVLDISKDLFHELGFDWLYEKPSKQKNQFSVSVLGEESAGN 222
Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
G +++ + LE ++ + P + G + F + +
Sbjct: 223 SGPVLGSKWNLIRQFSNAAEVLGLSFKLLEAKQDLKITSSPAILIAHGNTGEFKITEEVI 282
Query: 295 YKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345
+ + G++L P + + L I E+S+
Sbjct: 283 VGEKKEKKKGEHTSVEPIFKEAGLILKVVPYIHQDSSVTLDISLELSDFKYRQTNQKKDW 342
Query: 346 ---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
S R T + + + T+ + GL + + + +P L IP +G LFR+
Sbjct: 343 NFNSQGGSKIGRSLSTRIHVKNKETVFIGGLSRFTNRNTENKVPFLGDIPGIGHLFRSES 402
Query: 403 FNREETEIFIAA 414
ETE++I
Sbjct: 403 KKESETEMYIKI 414
>gi|62181400|ref|YP_217817.1| invasion protein; outer membrane [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|62129033|gb|AAX66736.1| invasion protein; outer membrane [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322715884|gb|EFZ07455.1| invasion protein; outer membrane [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 562
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + S LD F ++ALE
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526
>gi|238909665|ref|ZP_04653502.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
Length = 562
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + S LD F ++ALE
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526
>gi|320087303|emb|CBY97068.1| Protein invG Flags: Precursor [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
Length = 562
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + S LD F ++ALE
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526
>gi|291615048|ref|YP_003525205.1| type II and III secretion system protein [Sideroxydans
lithotrophicus ES-1]
gi|291585160|gb|ADE12818.1| type II and III secretion system protein [Sideroxydans
lithotrophicus ES-1]
Length = 560
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/396 (14%), Positives = 119/396 (30%), Gaps = 73/396 (18%)
Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD---- 143
YL G+ G++++ + G + A R S + + +D
Sbjct: 154 YLTGQRDGRSSLRV--ASGSVADSAVTQGMPATAATGTNSNR--DSSKVTMTTSTDFWGE 209
Query: 144 -TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
+ L +V + + + + + + I+ + QV L+ I
Sbjct: 210 LSAALKAIVGDEKGRSVVISPMSGVIVIRAMPDELKNVAA-YLKASQISIDRQVILEAKI 268
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------- 246
EV+ + Q G + + + G +S GG +
Sbjct: 269 VEVQLNDSFQSGVNWGVFKNGPNSHVTAGIGSPGSTLSPGGAVASTLANTALTSTPGASL 328
Query: 247 -----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+F +L+ LE + L+ P + ++ Q A
Sbjct: 329 LPTATSLLPSSAVAGSLFGLAFQTSNFAALLNFLETQGNVHVLSSPRIATLNNQKAVLKV 388
Query: 290 GGQHLY-----------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
G + ++ ++ V G+ L TP + I L + VS
Sbjct: 389 GTDEFFVTEVTGGTQATTAIAGTSPTVKVQPFFSGIALDVTPVIDENNEIILHVHPSVST 448
Query: 339 PVIGVNAGDMPSYR--------------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
D+ + V + D+ V G + + GL++ G
Sbjct: 449 VTTVNKTVDLGTSNGVSNIFNLPLASSSVSETDSIVRARDGQIVAIGGLMRQAEVNDDSG 508
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+P L K ++F + + E+ E+ I P +V
Sbjct: 509 LPGLPK-----SIFGQTSKHTEKRELVILLKPTVVD 539
>gi|257464370|ref|ZP_05628747.1| general secretion pathway protein D [Fusobacterium sp. D12]
Length = 435
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 20/252 (7%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGG 236
K++ ++I G+ QV + + ++ +D+ ++GF S + S G
Sbjct: 180 DKIIQEIDIEGK-QVKVYSQVLDISKDLFHELGFDWLYEKPSKQKNQFSVSVLGEESAGN 238
Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
G +++ + LE ++ + P + G + F + +
Sbjct: 239 SGPVLGSKWNLIRQFSNAAEVLGLSFKLLEAKQDLKITSSPAILIAHGNTGEFKITEEVI 298
Query: 295 YKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345
+ + G++L P + + L I E+S+
Sbjct: 299 VGEKKEKKKGEHTSVEPIFKEAGLILKVVPYIHQDSSVTLDISLELSDFKYRQTNQKKDW 358
Query: 346 ---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
S R T + + + T+ + GL + + + +P L IP +G LFR+
Sbjct: 359 NFNSQGGSKIGRSLSTRIHVKNKETVFIGGLSRFTNRNTENKVPFLGDIPGIGHLFRSES 418
Query: 403 FNREETEIFIAA 414
ETE++I
Sbjct: 419 KKESETEMYIKI 430
>gi|26990190|ref|NP_745615.1| type II and III secretion system protein [Pseudomonas putida
KT2440]
gi|24985131|gb|AAN69079.1|AE016541_7 secretion protein, putative [Pseudomonas putida KT2440]
Length = 621
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/437 (14%), Positives = 141/437 (32%), Gaps = 71/437 (16%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P E A + + + I+ +K + + + V + D
Sbjct: 187 PVTLEFRDANLKTIFEVLSQVAGINFIFDKDLRPDMK---ATIFVREVRIEDAIALLLEQ 243
Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
+ + T+ ++ + + + ++ L D ++ +
Sbjct: 244 NQLRQKIVNDNTVMVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
++ V+ +T+ + ++ +++ ++ + + + +
Sbjct: 299 DVFVDERLNTLTMRDTSDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 349
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
+G Q T + + + + + +
Sbjct: 350 ----------------LDLGLQWPNTFGVLSDDGNPVS-----VLDQLKGINSSRISIAP 388
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308
+ + ++A + I TLA P + + + A G + + SVT
Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365
D G+ L PTV + +++ EVS R A T++ L G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ +
Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 564
Query: 426 DLSRPDDHYSVEDDAKA 442
Y D +
Sbjct: 565 --------YQSPSDMEF 573
>gi|50121028|ref|YP_050195.1| type III secretion system protein [Pectobacterium atrosepticum
SCRI1043]
gi|42560404|gb|AAS20364.1| HrcC [Pectobacterium atrosepticum]
gi|49611554|emb|CAG75002.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
Length = 689
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/428 (13%), Positives = 130/428 (30%), Gaps = 43/428 (10%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99
G I + N + + + V++ A V + + + + G A +
Sbjct: 169 TGPKAYIDLIRNFSQQREKQDERRKVMIFPLRYASVSDRTLQYRDQKITI----PGVATI 224
Query: 100 I--LIGHDGKQML----NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
+ L+ + + + + + + R + + + G +
Sbjct: 225 LNELMDGQRAAPAGASGPMPVQPDTGMEAMRDSTRSLM--TRLATRTSPGR---SGEASS 279
Query: 154 IQDSQ-RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+ ++ + ++++ +++ V + I +V R L +
Sbjct: 280 RVTLSGKISADVRNNALLIRDDEKRRAEYQQLVEHIDVPQNL-VNIDAIILDVDRTALSR 338
Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
+ + + FVS D F + ALE +
Sbjct: 339 LEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADIQALEGEGTASIV 387
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLR 331
A P++ + Q A + G L TP V+ G + ++
Sbjct: 388 ANPSVLTLENQPAIVDFSRTAFITAT--GERVADIQPVTAGTSLQVTPRVIGEGAQRSIQ 445
Query: 332 IQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ ++ + + S R T + +VL G ++ IP+L
Sbjct: 446 LVIDIEDGQVETGREGEASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDRRIPILGD 505
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
IP+LG LF ++R E TP LV D + P + S + + +N+
Sbjct: 506 IPLLGKLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSVNRQQ--LNGAMNR 558
Query: 451 IYGPKEAS 458
+ +
Sbjct: 559 VAQRNGKT 566
>gi|218988958|gb|ACL13621.1| invasion protein InvG [Salmonella enterica subsp. salamae serovar
Sofia]
Length = 562
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 56/336 (16%), Positives = 118/336 (35%), Gaps = 50/336 (14%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD--TVVLHGMVRTIQD 156
+ +G++ + L+ L++ A NI++ D ++++ G
Sbjct: 233 MPAFSANGEKGKTANYAGGM---SLQEALKQNAAAGNIKIVAYPDTNSLLVKGT------ 283
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
+++ + + ++ L++A V L + I ++ + L+++G
Sbjct: 284 AEQVHFI------------------EMLVKALDVAKRH-VELSLWIVDLNKSDLERLGTS 324
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
S + G + + S LD F ++ALE ++ P
Sbjct: 325 WS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPV 372
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE- 335
L A F + K + ++ YG ++ P + G+I + + E
Sbjct: 373 LLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIED 430
Query: 336 ----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ + +P T +P G ++++ G +D + IP L KI
Sbjct: 431 GNDKTPQTDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKI 490
Query: 392 PILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
P +G+LFR S N+ P +V P+
Sbjct: 491 PFIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526
>gi|194445131|ref|YP_002042139.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194470942|ref|ZP_03076926.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|197248412|ref|YP_002147795.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Agona str.
SL483]
gi|198243599|ref|YP_002216867.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|205356993|ref|ZP_02344010.2| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205358415|ref|ZP_02656026.2| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|194403794|gb|ACF64016.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194457306|gb|EDX46145.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|197212115|gb|ACH49512.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Agona str.
SL483]
gi|197938115|gb|ACH75448.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|205324767|gb|EDZ12606.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205334513|gb|EDZ21277.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|321223445|gb|EFX48511.1| Protein InvG precursor [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
Length = 514
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 210
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + S LD F ++ALE
Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 317
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478
>gi|474942|emb|CAA53049.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium]
Length = 562
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/403 (15%), Positives = 134/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S G + + S LD F ++ALE
Sbjct: 318 LERLGTSWS------------GTITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526
>gi|92116356|ref|YP_576085.1| type II and III secretion system protein [Nitrobacter hamburgensis
X14]
gi|91799250|gb|ABE61625.1| type II and III secretion system protein [Nitrobacter hamburgensis
X14]
Length = 773
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/360 (17%), Positives = 128/360 (35%), Gaps = 34/360 (9%)
Query: 95 GQAN-VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G N G G + + + + +
Sbjct: 381 GNTNSPSAAGGSGSRPPSGMGGAGGGFSKVSQQTTASGGAGAGTNTPTGGGALDSNSGGN 440
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN-IAGED-QVTLKVTIAEVRRDILK 211
Q + V ++ ++ + ++ K + L + QV + TIAEV
Sbjct: 441 GQPLMQGVRITPDVVNNTLLIYADQANYKIIQATLQQVDQPQLQVAIDATIAEVTLTNEL 500
Query: 212 QIGFQHSITGSSSGPSKSFAADFG-----------------GKFVSEGGDFSVKGVLDRF 254
G Q +T + G + + + + L F
Sbjct: 501 SYGVQSYLTSKNLGMKANQGSLLNTQSNAAPIPTSAGTTDLAGAAGSVANAFINRALPGF 560
Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+F +L AL T+++ L+ P+L I+ Q+A+ G T +++ +
Sbjct: 561 NFLIGSEAQPAVILDALHAVTSVKVLSNPSLVVINNQTATLQVGDTVPVSTGTATVLNGN 620
Query: 307 ------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ + G++L +P + G + L ++ E+S ++ P+ R+ +++
Sbjct: 621 NNVVNSIDYRNTGIILRVSPRINVNGNVRLEVEQEISSVQPTASSTLTPTVAERRVKSSI 680
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ SG T++LAGL+ + + GIPLL +I LG F + TE+ I P +++
Sbjct: 681 SVASGQTVLLAGLISEQQNGGRSGIPLLDEIRGLGDAFAHQGKRGTRTELIIFIRPQIIR 740
>gi|42562008|gb|AAS20450.1| HrcC [Pseudomonas syringae pv. phaseolicola]
Length = 699
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 47/265 (17%), Positives = 89/265 (33%), Gaps = 16/265 (6%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R +K++ L+++ + + + I ++ R+ L ++ + +
Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
S G + + G S + + F + LHALE + + P++
Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSIL 393
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A S ++ G L P L ++ L + E
Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ I PS R T + G++V+ G + IPLL IP +G
Sbjct: 452 DGKIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511
Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
LF++ + E TP L+
Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536
>gi|205357926|ref|ZP_02574228.2| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205328766|gb|EDZ15530.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
Length = 556
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 151 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 198
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 199 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 252
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 253 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 311
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + S LD F ++ALE
Sbjct: 312 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 359
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 360 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 417
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 418 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 477
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 478 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 520
>gi|197263182|ref|ZP_03163256.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|205360510|ref|ZP_02683952.2| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|197241437|gb|EDY24057.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|205349182|gb|EDZ35813.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
Length = 514
Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats.
Identities = 62/403 (15%), Positives = 136/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 210
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + S LD F ++ALE
Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 317
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375
Query: 330 LRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + + +P T +P G ++++ G +D +
Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478
>gi|205359783|ref|ZP_02832405.2| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
gi|205342787|gb|EDZ29551.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
Length = 556
Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats.
Identities = 62/403 (15%), Positives = 136/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 151 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 198
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 199 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 252
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 253 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 311
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + S LD F ++ALE
Sbjct: 312 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 359
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 360 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 417
Query: 330 LRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + + +P T +P G ++++ G +D +
Sbjct: 418 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 477
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 478 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 520
>gi|76574829|gb|ABA47303.1| HrcC [Pseudomonas cichorii]
Length = 672
Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats.
Identities = 45/272 (16%), Positives = 87/272 (31%), Gaps = 15/272 (5%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
V + I ++ R L + + S S S G + + D
Sbjct: 301 VEIDAIILDIDRTQLSALESRWSARAGSVNFGSSLL----------TGGSATLSINDFDR 350
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
F + ALE +A P++ + Q A +V + G
Sbjct: 351 FFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITAT--GERVANVQSVTAGTS 408
Query: 316 LHFTPTVLSPGRIG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGL 373
L P ++ + ++ ++ + + + G+ P + T + ++V+ G
Sbjct: 409 LQVIPRTIAGAQPSRFQLIIDIEDGQLDRSRDGETPDVKRGTVSTQAVISENRSLVIGGF 468
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
D+ Q + +PLL +P+LG+LF + R E TP L+ ++
Sbjct: 469 HVDETGQHHDKVPLLGDLPVLGSLFTSKRQEVSRRERLFILTPRLIGDQIDPARYIATEN 528
Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
+ D N K A +
Sbjct: 529 -RPQLDKALALSGSPNSRDRKKAAISNAFADL 559
>gi|205353841|ref|YP_002227642.1| virulence associated secretory protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205273622|emb|CAR38609.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|326628950|gb|EGE35293.1| Protein invG [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
Length = 562
Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats.
Identities = 62/403 (15%), Positives = 137/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + + ++ L++A V L + I ++ +
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVNFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + S LD F ++ALE
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423
Query: 330 LRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + + +P T +P G ++++ G +D +
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526
>gi|148547514|ref|YP_001267616.1| type II and III secretion system protein [Pseudomonas putida F1]
gi|148511572|gb|ABQ78432.1| type II and III secretion system protein [Pseudomonas putida F1]
Length = 621
Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats.
Identities = 64/437 (14%), Positives = 141/437 (32%), Gaps = 71/437 (16%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
P E A + + + I+ +K + + + V + D
Sbjct: 187 PVTLEFRDANLKTIFEVLSQVAGINFIFDKDLRPDMK---ATIFVREVRIEDAIALLLEQ 243
Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
+ + T+ ++ + + + ++ L D ++ +
Sbjct: 244 NQLRQKIVNDNTVMVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
++ V+ +T+ + ++ +++ ++ + + + +
Sbjct: 299 DVFVDERLNTLTMRDTSDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 349
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
+G Q T + + + + S +
Sbjct: 350 ----------------LDLGLQWPNTFGVLSDDGNPVS-----VLDQLKGISSSRISIAP 388
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308
+ + ++A + I TLA P + + + A G + + SVT
Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365
D G+ L PTV + +++ EVS R A T++ L G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ +
Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 564
Query: 426 DLSRPDDHYSVEDDAKA 442
Y D +
Sbjct: 565 --------YQSPSDMEF 573
>gi|322614284|gb|EFY11215.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322621652|gb|EFY18505.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322624513|gb|EFY21346.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322628844|gb|EFY25627.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322633429|gb|EFY30171.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635995|gb|EFY32703.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322639703|gb|EFY36388.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322650654|gb|EFY47059.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322654733|gb|EFY51052.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658954|gb|EFY55207.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322664479|gb|EFY60673.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322668272|gb|EFY64429.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322673748|gb|EFY69849.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322677809|gb|EFY73872.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322681361|gb|EFY77393.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322683763|gb|EFY79773.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323193848|gb|EFZ79051.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323200318|gb|EFZ85400.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323205574|gb|EFZ90539.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323210085|gb|EFZ94988.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323216388|gb|EGA01115.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323221135|gb|EGA05566.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323226957|gb|EGA11139.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230759|gb|EGA14877.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323234890|gb|EGA18976.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323238929|gb|EGA22979.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323241629|gb|EGA25660.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323248224|gb|EGA32160.1| type III secretion system outer membrane pore InvG [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323251192|gb|EGA35065.1| type III secretion system outer membrane pore InvG [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323256076|gb|EGA39814.1| type III secretion system outer membrane pore InvG [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323263211|gb|EGA46749.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264286|gb|EGA47792.1| type III secretion system outer membrane pore InvG [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323271112|gb|EGA54540.1| type III secretion system outer membrane pore InvG [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
Length = 562
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 61/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + + LD F ++ALE
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 365
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526
>gi|183600572|ref|ZP_02962065.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827]
gi|188019849|gb|EDU57889.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827]
Length = 562
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 21/235 (8%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
QV L + I ++ R L +G + ++G + F+ +
Sbjct: 305 TRRRQVELSLWIIDITRSELDNLGVNWEVGTINTGNT--------------AFSFNRSTL 350
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ F + AL ++ ++ P L A F + K ++
Sbjct: 351 SNSTDFLLRVDALSKSGNGHIVSRPVLLTQENIPALFDNNTSFYAKL--QGERIATLEQV 408
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
YG ++ P + S ++ + + E S+ N +PS +T +
Sbjct: 409 TYGTMVSVMPRISSGHQVEMEVNIEDGGEKQSKSGEVSNVEGLPSVNRTTINTVARIAQN 468
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++++ G ++ + + + IPLL IP++G LF ++ N+++ P L+
Sbjct: 469 SSLLIGGYTREQVVENESHIPLLGDIPLIGGLFSHTSVNKQKMVRLFLIQPRLLD 523
>gi|194448425|ref|YP_002046858.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|205359156|ref|ZP_02667567.2| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL486]
gi|194406729|gb|ACF66948.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|205338023|gb|EDZ24787.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL486]
Length = 556
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 61/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 151 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 198
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 199 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 252
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 253 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 311
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + + LD F ++ALE
Sbjct: 312 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 359
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 360 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 417
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 418 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 477
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 478 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 520
>gi|200387736|ref|ZP_03214348.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|204928222|ref|ZP_03219422.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|199604834|gb|EDZ03379.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|204322544|gb|EDZ07741.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
Length = 514
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 61/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 210
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + + LD F ++ALE
Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 317
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478
>gi|30524891|gb|AAP34336.1|AF499777_4 HrcC [Xanthomonas axonopodis pv. glycines]
Length = 607
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 84/241 (34%), Gaps = 19/241 (7%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-------------GGKFVSEGG 243
+ TI E+R ++ +G + + G GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGSQLGFNGALSGAATDGATTPAGG 429
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ T + ALE + ++ P + + A Q + ++
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489
Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ GV L P+V+ G++ L ++ E + +P + T
Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G ++++AG D + +P LSKIP+LG LF++ + + + TP +V
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606
Query: 421 P 421
P
Sbjct: 607 P 607
>gi|330894456|gb|EGH27117.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. mori
str. 301020]
Length = 703
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 57/405 (14%), Positives = 128/405 (31%), Gaps = 42/405 (10%)
Query: 45 GKGKKISIGLNKVIILQVPV--DVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQAN 98
G K + + + + P D QD++V A + + + + G +
Sbjct: 148 GPAKYVELVRDYSKKVDTPEKGDKQDIIVFPLKYASAADRTIRYRDQELVVAGVASILQD 207
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLR--RFIADSNIRVEMVSDTVVLHGMVR---- 152
++ + G+ + D++ ++ + + ++ + G+ +
Sbjct: 208 LLDVRSRGQSIKGTDLIGRGGRGTGGLSGGDGQDTPSLPLNASGINTGALEQGLDQVLHY 267
Query: 153 --------------TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ + R + +K++ L+++ + + +
Sbjct: 268 GSGGGGKSSGKSRSGGRATIRVPADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEI 326
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
I ++ R+ L ++ + + S G + + G S + + F
Sbjct: 327 DAVILDIDRNELAELSSRWNFNAGSVGGGVNMF---------DAGTTSTMFIQNAGKFTA 377
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
LH LE + + P++ + Q S ++ G L
Sbjct: 378 ELHTLEGNGSASVIGNPSILTLENQPGVIDFSRTEYLTAT--SERVANIEPITAGTSLQV 435
Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
TP L ++ L + E + I PS R T + G++V+ G
Sbjct: 436 TPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHG 495
Query: 376 DDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
+ +PLL IP +G LF++ E TP L+
Sbjct: 496 LEANDKVHKVPLLGDIPYIGKLLFQSRSRELSNRERLFILTPRLI 540
>gi|54294209|ref|YP_126624.1| type II protein secretion LspD [Legionella pneumophila str. Lens]
gi|53754041|emb|CAH15514.1| type II protein secretion LspD [Legionella pneumophila str. Lens]
Length = 791
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 66/430 (15%), Positives = 141/430 (32%), Gaps = 41/430 (9%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L + P + I A N V K +I + + +IL++ D + S+
Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371
Query: 76 KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
+ + G +G + + + +
Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
L T N + T + + + + + T + K
Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRTLK 490
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
V++ L+I Q+ ++ +AEV + +G + G
Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293
G + F+ ++AL R L+ P++ + + A G Q +
Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350
++++ T+ + + L+ P + I L+I + D +
Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATSTTDNTTTPT 658
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ +
Sbjct: 659 FNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718
Query: 411 FIAATPFLVK 420
+ P +++
Sbjct: 719 MVFIKPIILR 728
>gi|268592383|ref|ZP_06126604.1| type III secretion outer membrane pore, YscC/HrcC family
[Providencia rettgeri DSM 1131]
gi|291312169|gb|EFE52622.1| type III secretion outer membrane pore, YscC/HrcC family
[Providencia rettgeri DSM 1131]
Length = 567
Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats.
Identities = 37/243 (15%), Positives = 87/243 (35%), Gaps = 22/243 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+++N L++ QV L + I ++ R L +G + ++G +
Sbjct: 303 QLVNTLDMR-RRQVELSLWIIDITRSELDNLGVNWEVGTFNTG--------------TGS 347
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
F+ + + F + AL + ++ P L A F + K
Sbjct: 348 VSFNRSTLSNSQQFLLQIDALNKTGNGHIVSRPVLLTQENIPALFDNNTSFYAKL--QGE 405
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKAD 357
++ YG ++ P + + + + + E + +P+ +
Sbjct: 406 RIATLEQVTYGTMVSVMPRISAGNNVEMEVNIEDGAENRDSMGKTSSVEGLPAVNRTSIN 465
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T + ++++ G ++ + + IP L +P +G LF +S N+++ P
Sbjct: 466 TVARIAKDSSLLIGGYTREQYVENESKIPFLGDLPYVGGLFSHSSMNQQKMVRLFLIQPR 525
Query: 418 LVK 420
L+
Sbjct: 526 LLD 528
>gi|148358852|ref|YP_001250059.1| type II protein secretion LspD [Legionella pneumophila str. Corby]
gi|296106898|ref|YP_003618598.1| type II protein secretion LspD [Legionella pneumophila 2300/99
Alcoy]
gi|148280625|gb|ABQ54713.1| type II protein secretion LspD [Legionella pneumophila str. Corby]
gi|295648799|gb|ADG24646.1| type II protein secretion LspD [Legionella pneumophila 2300/99
Alcoy]
Length = 791
Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats.
Identities = 66/430 (15%), Positives = 141/430 (32%), Gaps = 41/430 (9%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L + P + I A N V K +I + + +IL++ D + S+
Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371
Query: 76 KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
+ + G +G + + + +
Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
L T N + T + + + + + T K
Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRILK 490
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
V++ L+I Q+ ++ +AEV + +G + G
Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293
G + F+ ++AL R L+ P++ + + A G Q +
Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350
++++ T+ + + L+ P + I L+I + + P+
Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 658
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ +
Sbjct: 659 FNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718
Query: 411 FIAATPFLVK 420
+ P +++
Sbjct: 719 MVFIKPIILR 728
>gi|161502058|ref|YP_001569170.1| hypothetical protein SARI_00075 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160863405|gb|ABX20028.1| hypothetical protein SARI_00075 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 563
Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats.
Identities = 55/336 (16%), Positives = 116/336 (34%), Gaps = 50/336 (14%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD--TVVLHGMVRTIQD 156
+ +G++ + L+ L++ A +I++ D ++++ G
Sbjct: 234 MPAFSANGEKSKTANYAGGM---SLQEALKQNAAAGDIKIVAYPDTNSLLVKGT------ 284
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
+++ + + ++ L++A V L + I ++ + L+++G
Sbjct: 285 AEQVHFI------------------EMLVKALDVAKRH-VELSLWIVDLNKSDLERLGAS 325
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
S + G + + S LD F ++ALE ++ P
Sbjct: 326 WS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPV 373
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
L A F + K + ++ YG ++ P + G+I + + E
Sbjct: 374 LLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIED 431
Query: 337 SEPVI-----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ +P T +P G ++++ G +D + IP L KI
Sbjct: 432 GNDTTPQTEITASVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKI 491
Query: 392 PILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
P +G LFR S N+ P +V P+
Sbjct: 492 PFIGGLFRYSSKNKSNVVRVFLIEPKEIVDPLTPDA 527
>gi|21241188|ref|NP_640770.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306]
gi|21106496|gb|AAM35306.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 607
Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 84/241 (34%), Gaps = 19/241 (7%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-------------FGGKFVSEGG 243
+ TI E+R ++ +G + + G GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGGQLGFNGALSGAATDGATTPAGG 429
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ T + ALE + ++ P + + A Q + ++
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489
Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ GV L P+V+ G++ L ++ E + +P + T
Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G ++++AG D + +P LSKIP+LG LF++ + + + TP +V
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606
Query: 421 P 421
P
Sbjct: 607 P 607
>gi|52841551|ref|YP_095350.1| type II protein secretion LspD [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52628662|gb|AAU27403.1| type II protein secretion LspD [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 791
Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats.
Identities = 66/430 (15%), Positives = 141/430 (32%), Gaps = 41/430 (9%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L + P + I A N V K +I + + +IL++ D + S+
Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371
Query: 76 KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
+ + G +G + + + +
Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
L T N + T + + + + + T K
Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRILK 490
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
V++ L+I Q+ ++ +AEV + +G + G
Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293
G + F+ ++AL R L+ P++ + + A G Q +
Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350
++++ T+ + + L+ P + I L+I + + P+
Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 658
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ +
Sbjct: 659 FNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718
Query: 411 FIAATPFLVK 420
+ P +++
Sbjct: 719 MVFIKPIILR 728
>gi|302129976|ref|ZP_07255966.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. tomato NCPPB 1108]
Length = 699
Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+K++ L++ + + + I ++ R+ L ++ + + S G GG + +
Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFD 356
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G S + + F LHALE + + P++ + Q A S
Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
A + G L P L ++ + + E + + PS R T
Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
+ G++V+ G + IPLL IP +G LF++ + E TP
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534
Query: 418 LV 419
L+
Sbjct: 535 LI 536
>gi|293416358|ref|ZP_06658997.1| YscC/HrcC family type III secretion outer membrane pore
[Escherichia coli B185]
gi|291431714|gb|EFF04697.1| YscC/HrcC family type III secretion outer membrane pore
[Escherichia coli B185]
Length = 566
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 20/248 (8%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
++ LL++A V L + I ++ ++ L+Q+G + +
Sbjct: 296 LVRLLDVAKRH-VELSLWIIDLNKNDLEQLGVAWG------------GSTSFSNKLDIAL 342
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ ++ LD F ++ALE+ R +++P L A F + K +
Sbjct: 343 NQTLVSTLDGVHFLASVYALEKKNQARIVSKPVLMTQENVPAIFDNNRTFYTKLIGERN- 401
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGDMPSYRVRKADTT 359
+S+ YG ++ P + G I + + E + V G +P T
Sbjct: 402 -SSLAHVTYGTMISVLPRFSADGEIEMSLNIEDGNEEKQSVSGNEDSVLPEVGRTHISTV 460
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF-L 418
+P G ++++ G +D + + IPLL IP++G LFR N+ P +
Sbjct: 461 ARVPQGKSLLIGGYTRDSRTKDVQKIPLLGDIPLIGGLFRYENQNQNNVVRVFLIQPKEI 520
Query: 419 VKPVAMRD 426
+ P+
Sbjct: 521 LDPLMPDA 528
>gi|194736395|ref|YP_002115850.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197300771|ref|ZP_02660996.2| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|194711897|gb|ACF91118.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197290685|gb|EDY30039.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
Length = 514
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 61/403 (15%), Positives = 136/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 210
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + + LD F ++ALE
Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 317
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375
Query: 330 LRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + + +P T +P G ++++ G +D +
Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478
>gi|162533078|ref|NP_791216.2| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213968270|ref|ZP_03396414.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv.
tomato T1]
gi|301383405|ref|ZP_07231823.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. tomato Max13]
gi|302061709|ref|ZP_07253250.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. tomato K40]
gi|119388972|gb|AAO54911.2| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213926908|gb|EEB60459.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv.
tomato T1]
Length = 699
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+K++ L++ + + + I ++ R+ L ++ + + S G GG + +
Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFD 356
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G S + + F LHALE + + P++ + Q A S
Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
A + G L P L ++ + + E + + PS R T
Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
+ G++V+ G + IPLL IP +G LF++ + E TP
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534
Query: 418 LV 419
L+
Sbjct: 535 LI 536
>gi|237799995|ref|ZP_04588456.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331022850|gb|EGI02907.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 700
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 46/269 (17%), Positives = 91/269 (33%), Gaps = 16/269 (5%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+ S R +K++ L++ + + + I ++ R+ L ++
Sbjct: 281 RASIRVSADVRNNSVLIYDLPERKGMYQKLVKELDVP-RNLIEIDAVILDIDRNELAELS 339
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ + + + GG + + G S + + F LHALE + +
Sbjct: 340 SRWNF---------NAGSVSGGANLFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGN 390
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
P++ + Q A S A + G L P L ++ +
Sbjct: 391 PSILTLENQPAVIDLSRTEYLTAT--SERAAEILPITAGTSLQVIPRSLDHDGKSQVQMI 448
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ E + + PS R T + G++V+ G + +PLL I
Sbjct: 449 VDIEDGQIDVSTINDTQPSVRRGNVSTQAMIAEHGSLVIGGFHGLEANDRIHKVPLLGDI 508
Query: 392 PILGA-LFRNSRFNREETEIFIAATPFLV 419
P +G LF++ + E TP L+
Sbjct: 509 PYIGKLLFQSRSRELSQRERLFILTPRLI 537
>gi|330872930|gb|EGH07079.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. morsprunorum str. M302280PT]
Length = 699
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+K++ L++ + + + I ++ R+ L ++ + + S G GG + +
Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFD 356
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G S + + F LHALE + + P++ + Q A S
Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
A + G L P L ++ + + E + + PS R T
Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
+ G++V+ G + IPLL IP +G LF++ + E TP
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534
Query: 418 LV 419
L+
Sbjct: 535 LI 536
>gi|213425700|ref|ZP_03358450.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
Length = 505
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 57/316 (18%), Positives = 110/316 (34%), Gaps = 53/316 (16%)
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
L+ L++ A NI++ DT L G V I+ +A+++++
Sbjct: 196 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 246
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
V L + I ++ + L+++G S + G
Sbjct: 247 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 275
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ + S LD F ++ALE ++ P L A F + K
Sbjct: 276 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 335
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
+ ++ YG ++ P + G+I + + E + +P
Sbjct: 336 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 393
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
T +P G ++++ G +D + IP+L K+P++G+LFR S N+
Sbjct: 394 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRV 453
Query: 412 IAATPF-LVKPVAMRD 426
P +V P+
Sbjct: 454 FMIEPKEIVDPLTPDA 469
>gi|15834670|ref|NP_296429.1| type III secretion protein SctC [Chlamydia muridarum Nigg]
gi|7190084|gb|AAF38934.1| type III secretion protein SctC [Chlamydia muridarum Nigg]
Length = 672
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q + G G
Sbjct: 318 INNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 377
Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
+ V + G G++
Sbjct: 378 KVAYASGLLSNTGVVDPLRNQTPPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 437
Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
+ +L AL++ + P + A Q ASF G ++T
Sbjct: 438 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 497
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + ++ D GV L T T+ + L+I+ +SE P A T
Sbjct: 498 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 556
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D + ++ G+PLLS +P++ LF + R++ I I P ++
Sbjct: 557 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVI 616
Query: 420 KPVAMRDLSRPDDHYS 435
+ + Y
Sbjct: 617 SSFEEGTVLSNSEGYR 632
>gi|54297230|ref|YP_123599.1| type II protein secretion LspD [Legionella pneumophila str. Paris]
gi|53751015|emb|CAH12426.1| type II protein secretion LspD [Legionella pneumophila str. Paris]
Length = 791
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 66/430 (15%), Positives = 141/430 (32%), Gaps = 41/430 (9%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L + P + I A N V K +I + + +IL++ D + S+
Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371
Query: 76 KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
+ + G +G + + + +
Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
L T N + T + + + + + T K
Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRILK 490
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
V++ L+I Q+ ++ +AEV + +G + G
Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293
G + F+ ++AL R L+ P++ + + A G Q +
Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350
++++ T+ + + L+ P + I L+I + + P+
Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 658
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ +
Sbjct: 659 FNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718
Query: 411 FIAATPFLVK 420
+ P +++
Sbjct: 719 MVFIKPIILR 728
>gi|329942358|ref|ZP_08291168.1| bacterial type II and III secretion system family protein
[Chlamydophila psittaci Cal10]
gi|332287000|ref|YP_004421901.1| bacterial type II/III secretion system protein [Chlamydophila
psittaci 6BC]
gi|325507136|gb|ADZ18774.1| bacterial type II/III secretion system protein [Chlamydophila
psittaci 6BC]
gi|328815268|gb|EGF85256.1| bacterial type II and III secretion system family protein
[Chlamydophila psittaci Cal10]
gi|328914230|gb|AEB55063.1| general secretion pathway protein D, putative [Chlamydophila
psittaci 6BC]
Length = 885
Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats.
Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q G G
Sbjct: 531 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 590
Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252
+ ++ F + + +
Sbjct: 591 KVAYASGLLSNTGLANPTKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 650
Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
S +L AL++ + P + A Q ASF G ++T
Sbjct: 651 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 710
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ T ++ D GV L TV + L+I+ +SE P A T
Sbjct: 711 TGTVTQNIEYEDIGVNLVVASTVAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 769
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++
Sbjct: 770 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 829
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 830 SSFEEGTKLTNKEGYR 845
>gi|317050393|ref|YP_004111509.1| type II and III secretion system protein [Desulfurispirillum
indicum S5]
gi|316945477|gb|ADU64953.1| type II and III secretion system protein [Desulfurispirillum
indicum S5]
Length = 506
Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 19/241 (7%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LD 252
QV ++ I EV + +G + S+ GG F GGD + V
Sbjct: 260 KQVLIEAQIFEVVLNDSHSLGIDWTNAFSAGSGVGIIGQATGGSFGLPGGDMATGVVQYT 319
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSV 307
R +F +L + A + L+ P + ++ Q+A +SG + +
Sbjct: 320 RNNFTGMLQVMRNAGNLEALSNPRIRVMNSQTAIISSGRITPFWTKRVDYSEVGGQINRI 379
Query: 308 TTHD-----YGVVLHFTPTVLSPGRIGLR--------IQTEVSEPVIGVNAGDMPSYRVR 354
T+D G+ + TP + G I L + + G P ++
Sbjct: 380 ETYDRRDVLSGISMGVTPVIAPDGSILLTVIPVSTNFEEIDQQTDSSGDLIVSAPVVNMK 439
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+A T + + +V+ GL+ ++ + + LS IP+LG LFR SR +E E+ I
Sbjct: 440 EAGTIIRVQDNDMVVIGGLISTSTRRETQEVSGLSAIPLLGHLFRGSRDVQERRELVIFL 499
Query: 415 T 415
Sbjct: 500 R 500
>gi|297565761|ref|YP_003684733.1| type II and III secretion system protein [Meiothermus silvanus DSM
9946]
gi|296850210|gb|ADH63225.1| type II and III secretion system protein [Meiothermus silvanus DSM
9946]
Length = 771
Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats.
Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 25/253 (9%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV L+V I V +++++G + + + F + L
Sbjct: 527 KQQVQLQVRIQAVNSSVIRELGLKWETISGGNLVASILEKGLSLIFDA-------TRSLA 579
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQ-----------------SASFTSGGQHLY 295
+ L+ALE R +++ L SG A
Sbjct: 580 SLNIRATLNALESQNLSRRISDANLLVESGYGNDTSDLRQANAAGAELKAGGKLLIVTTT 639
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
+ S G SV D G+ L P + G+I L + T+ E V A D V
Sbjct: 640 ASTSQGGGQQSVREFDVGLTLRLRPRITPDGQIILEVYTQTGE-QPQVLAPDRTFLPVNS 698
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
++ + G T+V+ GL++ + +PLL IPI+GALF+ + ++ E+ + T
Sbjct: 699 TLSSFRIKDGQTVVMGGLVQTTTTNTENKVPLLGDIPIIGALFKQTTAENKQEELIVIIT 758
Query: 416 PFLVKPVAMRDLS 428
+VK
Sbjct: 759 ANIVKEQQAATGQ 771
>gi|313847597|emb|CBY16585.1| putative general secretion protein [Chlamydophila psittaci RD1]
Length = 907
Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats.
Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q G G
Sbjct: 553 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 612
Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252
+ ++ F + + +
Sbjct: 613 KVAYASGLLSNTGLANPTKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 672
Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
S +L AL++ + P + A Q ASF G ++T
Sbjct: 673 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 732
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ T ++ D GV L TV + L+I+ +SE P A T
Sbjct: 733 TGTVTQNIEYEDIGVNLVVASTVAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 791
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++
Sbjct: 792 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 851
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 852 SSFEEGTKLTNKEGYR 867
>gi|7416860|dbj|BAA94087.1| hypersensitive response secretion protein [Xanthomonas oryzae pv.
oryzae]
Length = 605
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 50/289 (17%), Positives = 94/289 (32%), Gaps = 20/289 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G D+ T S ++ L+ + + TI E+R
Sbjct: 321 GGAELASDAPVIEADPRTNAILIRDRPERMQSYGTLIQQLDNR-PKLLQIDATIIEIRDG 379
Query: 209 ILKQIGFQHSIT-------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
++ +G G A G GG +
Sbjct: 380 AMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGAATDGATTPVGGTLTAVLGDAGRY 439
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
T + ALE + ++ P + + A Q + ++ + GV
Sbjct: 440 LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVS 497
Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
L P+V+ G++ L ++ E + +P + T + G ++++AG
Sbjct: 498 LRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEIKTQAFVNEGQSLLIAG 556
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
D + +P LSKIP+LG LF++ + + + TP +V P
Sbjct: 557 YAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVSP 605
>gi|331015110|gb|EGH95166.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 699
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+K++ L++ + + + I ++ R+ L ++ + + S G GG + +
Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNTGSVG---------GGANLFD 356
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G S + + F LHALE + + P++ + Q A S
Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
A + G L P L ++ + + E + + PS R T
Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
+ G++V+ G + IPLL IP +G LF++ + E TP
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534
Query: 418 LV 419
L+
Sbjct: 535 LI 536
>gi|150026329|ref|YP_001297155.1| general secretion pathway protein D precursor [Flavobacterium
psychrophilum JIP02/86]
gi|149772870|emb|CAL44354.1| Putative bacterial general secretion pathway protein D precursor
[Flavobacterium psychrophilum JIP02/86]
Length = 720
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 38/243 (15%), Positives = 86/243 (35%), Gaps = 19/243 (7%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF- 254
+ ++V + EV + + GF I + + ++ + +
Sbjct: 477 ILIEVMLLEVSKSATIETGFSAGIGDKPVTTKGTVFPNSDIVLGAQTINKIINSFDGFGS 536
Query: 255 --------SFETVLHALERATAIRTLAEPTLTAISGQSASFTS---------GGQHLYKT 297
+F L A+E ++ + P L+ ++G A +
Sbjct: 537 LNIGSVVPNFNLSLKAMESNGNLKIRSAPRLSTLNGHKAYLSIGETTYYVVTNQNFYGSQ 596
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
+ ++ + D + + P V G+I + I+ S V+ P R+
Sbjct: 597 IPQTSEVKNYQPIDAELSVTIMPLVSGDGQITMDIKVIQSSFNGQKVDKNAPPGINSREF 656
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ + + IVL GL + G+P+L++IPI+ LF + + ++ + P
Sbjct: 657 TSIIRVKDQDLIVLGGLEEKVKNDSGSGVPILARIPIIKWLFSSRKREDSNKKLTVLIKP 716
Query: 417 FLV 419
++
Sbjct: 717 TVI 719
>gi|89898772|ref|YP_515882.1| type III secretion general secretion pathway protein D
[Chlamydophila felis Fe/C-56]
gi|89332144|dbj|BAE81737.1| type III secretion general secretion pathway protein D
[Chlamydophila felis Fe/C-56]
Length = 908
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q G G
Sbjct: 554 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 613
Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252
+ +S F + + +
Sbjct: 614 KVAYASGLLSNTGISNPTKSTIPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 673
Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
S +L AL++ + P + A Q ASF G ++T
Sbjct: 674 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 733
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ T ++ D GV L T+ + L+I+ +SE P A T
Sbjct: 734 TGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 792
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++
Sbjct: 793 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 852
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 853 SSFEEGTTLTNKEGYR 868
>gi|77919277|ref|YP_357092.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus
DSM 2380]
gi|77545360|gb|ABA88922.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus
DSM 2380]
Length = 767
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 72/398 (18%), Positives = 134/398 (33%), Gaps = 73/398 (18%)
Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT-----LRRFIADSN 135
V + +T+ ++ + + ++ I+ ++H+E LR +
Sbjct: 249 VLNSQTILVYPRT----------KEKEKQYEDRIIQVFYLSHIEAKKAVNLLRTILQTRK 298
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
I V + +V+ D +EL+ L S + +
Sbjct: 299 IYVHDELNAIVMR-------DKPEVIELARQILEASD------------------RNDSE 333
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
V + + EV L IG + S S+G ++ G + D G
Sbjct: 334 VVFDLELVEVSHRDLLDIGPKLSSYSISAGMGRTILDTDGNVVTNLVSDTLAAGGTTDTL 393
Query: 256 F-------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ LA P + + + A G + T + ST
Sbjct: 394 VRSFSRLESFYTLPTATFDFAKTLIDSEILANPKIRVKNREKAKVHIGTKEPIVTTNIST 453
Query: 303 GA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVR 354
T+V D GV L P + I ++ EVS + G
Sbjct: 454 TTGDVTSTNVQYIDVGVKLDVEPNIQLDDTIVTKLTLEVSSILEKEEIAGGGSALRISTT 513
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
A +++ L G ++ GL+++D+ ++ +P + IPI+G LF + ++EI ++
Sbjct: 514 NAGSSLILKDGERTIIGGLIRNDLSDTRDTLPFIGSIPIIGHLFTGRSKEKNKSEILLSI 573
Query: 415 TPFLVKPVAMRDLSRPD---------DHYSVEDDAKAF 443
TP +V+ V D+ RPD D + F
Sbjct: 574 TPHIVRSV---DMPRPDVATIWSGGEDDLAPGARFARF 608
>gi|58579717|ref|YP_198733.1| hypothetical protein XOO0094 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84621739|ref|YP_449111.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|7350909|gb|AAC95122.2| HrpA [Xanthomonas oryzae pv. oryzae]
gi|9711580|dbj|BAB07849.1| HrpA [Xanthomonas oryzae pv. oryzae]
gi|24251284|gb|AAN46403.1| HrcC [Xanthomonas oryzae pv. oryzae]
gi|50428343|dbj|BAD29980.1| HrcC [Xanthomonas oryzae pv. oryzae]
gi|58424311|gb|AAW73348.1| HrcC protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84365679|dbj|BAE66837.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|118076671|gb|ABK60047.1| HrcC [Xanthomonas oryzae pv. oryzae]
Length = 605
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 50/289 (17%), Positives = 94/289 (32%), Gaps = 20/289 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G D+ T S ++ L+ + + TI E+R
Sbjct: 321 GGAELASDAPVIEADPRTNAILIRDRPERMQSYGTLIQQLDNR-PKLLQIDATIIEIRDG 379
Query: 209 ILKQIGFQHSIT-------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
++ +G G A G GG +
Sbjct: 380 AMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGAATDGATTPVGGTLTAVLGDAGRY 439
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
T + ALE + ++ P + + A Q + ++ + GV
Sbjct: 440 LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVS 497
Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
L P+V+ G++ L ++ E + +P + T + G ++++AG
Sbjct: 498 LRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEIKTQAFVNEGQSLLIAG 556
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
D + +P LSKIP+LG LF++ + + + TP +V P
Sbjct: 557 YAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVSP 605
>gi|315918572|ref|ZP_07914812.1| general secretion pathway protein D [Fusobacterium gonidiaformans
ATCC 25563]
gi|313692447|gb|EFS29282.1| general secretion pathway protein D [Fusobacterium gonidiaformans
ATCC 25563]
Length = 419
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 68/435 (15%), Positives = 141/435 (32%), Gaps = 62/435 (14%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV------IIL 60
F ++ +F +LP E + + + E+ I I +++ +
Sbjct: 14 ILFALICLFTLEEVCYAKELPKDIEMSDTTLREALDELEGCLGIKITVDESPKDPLNLFF 73
Query: 61 QVPVDVQDVLVSDPTKAD--VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
Q +++VL + V S L + +++ L
Sbjct: 74 QEGQSIEEVLDMLGEITNKKVKKISNHEFLLEEVQI----------QKEEISKEYHLHYL 123
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
+ L+ D I + + + ++E +
Sbjct: 124 RSKEIYDALKDLFPDIKI---------------ANLDSRNQVIVVAE---------EKKI 159
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
K+M ++I G+ QV + I ++ +D+ ++GF S +K A G +
Sbjct: 160 HEIDKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEES 218
Query: 239 VSEGG-------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
V G + + + L LE ++ + P++ G F
Sbjct: 219 VGNSGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITE 278
Query: 292 QHLYKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-- 345
+ + S + + G++L P + + L I E+S+
Sbjct: 279 EVIVGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQK 338
Query: 346 ------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
S R T + + + TI++ GL + + + +P LS IP LG LF+
Sbjct: 339 KDWNFNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFK 398
Query: 400 NSRFNREETEIFIAA 414
+ ET+++I
Sbjct: 399 SESKKDAETDMYIKI 413
>gi|257467448|ref|ZP_05631759.1| general secretion pathway protein D [Fusobacterium gonidiaformans
ATCC 25563]
Length = 435
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 68/435 (15%), Positives = 141/435 (32%), Gaps = 62/435 (14%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV------IIL 60
F ++ +F +LP E + + + E+ I I +++ +
Sbjct: 30 ILFALICLFTLEEVCYAKELPKDIEMSDTTLREALDELEGCLGIKITVDESPKDPLNLFF 89
Query: 61 QVPVDVQDVLVSDPTKAD--VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
Q +++VL + V S L + +++ L
Sbjct: 90 QEGQSIEEVLDMLGEITNKKVKKISNHEFLLEEVQI----------QKEEISKEYHLHYL 139
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
+ L+ D I + + + ++E +
Sbjct: 140 RSKEIYDALKDLFPDIKI---------------ANLDSRNQVIVVAE---------EKKI 175
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
K+M ++I G+ QV + I ++ +D+ ++GF S +K A G +
Sbjct: 176 HEIDKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEES 234
Query: 239 VSEGG-------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
V G + + + L LE ++ + P++ G F
Sbjct: 235 VGNSGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITE 294
Query: 292 QHLYKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-- 345
+ + S + + G++L P + + L I E+S+
Sbjct: 295 EVIVGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQK 354
Query: 346 ------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
S R T + + + TI++ GL + + + +P LS IP LG LF+
Sbjct: 355 KDWNFNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFK 414
Query: 400 NSRFNREETEIFIAA 414
+ ET+++I
Sbjct: 415 SESKKDAETDMYIKI 429
>gi|294625827|ref|ZP_06704443.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292599855|gb|EFF43976.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 607
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 19/241 (7%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GG 243
+ TI E+R ++ +G G G F G GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGG 429
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ T + ALE + ++ P + + A Q + ++
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489
Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ GV L P+V+ G++ L ++ E + +P + T
Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G ++++AG D + +P LSKIP+LG LF++ + + + TP +V
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606
Query: 421 P 421
P
Sbjct: 607 P 607
>gi|16761675|ref|NP_457292.1| virulence associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29143159|ref|NP_806501.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213052440|ref|ZP_03345318.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213612699|ref|ZP_03370525.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|25512784|pir||AF0852 secretory protein (associated with virulence) [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16503976|emb|CAD06005.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138792|gb|AAO70361.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 562
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 57/316 (18%), Positives = 111/316 (35%), Gaps = 53/316 (16%)
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
L+ L++ A NI++ DT L G V I+ +A+++++
Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 303
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
V L + I ++ + L+++G S + G
Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ + S LD F ++ALE ++ P L A F + K
Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSY 351
+ ++ YG ++ P + G+I + + E + + +P
Sbjct: 393 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
T +P G ++++ G +D + IP+L K+P++G+LFR S N+
Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRV 510
Query: 412 IAATPF-LVKPVAMRD 426
P +V P+
Sbjct: 511 FMIEPKEIVDPLTPDA 526
>gi|159024044|gb|ABW87272.1| HrcC [Xanthomonas fuscans subsp. fuscans]
Length = 607
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 19/241 (7%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GG 243
+ TI E+R ++ +G G G F G GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGG 429
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ T + ALE + ++ P + + A Q + ++
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489
Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ GV L P+V+ G++ L ++ E + +P + T
Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G ++++AG D + +P LSKIP+LG LF++ + + + TP +V
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606
Query: 421 P 421
P
Sbjct: 607 P 607
>gi|218961675|ref|YP_001741450.1| hypothetical protein; putative signal peptide [Candidatus
Cloacamonas acidaminovorans]
gi|167730332|emb|CAO81244.1| hypothetical protein; putative signal peptide [Candidatus
Cloacamonas acidaminovorans]
Length = 472
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 32/256 (12%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-----------SSSGPSKSFAADFGGKFVSEG 242
Q+ ++V + EV + KQIG S + G + ++ G
Sbjct: 191 QQIEIRVRLIEVHLNEAKQIGVDWSKLNHLTTILAEDPVNQYGTGLPYNYSDATGYLPHG 250
Query: 243 GDFSVKGVLDR-------------------FSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ D +F+ + L A + L + +TA++G+
Sbjct: 251 DPTDFGVIPDEQYFQRINGFHDIGHFSRQLTAFDVTIDWLLENNAAQLLTDTRVTALNGE 310
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
A+ G+ + V+ V + G++L+ TP V G I + I EVS V
Sbjct: 311 LATM-HIGEVVPFVVTDKENQLQVERSETGIILNVTPKVNKDGNITMNINPEVSSVTELV 369
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+P +VR+ + V +P+ I++ GLL +I Q IPLL +P++G +F++
Sbjct: 370 GGY-IPRTKVRRVSSAVTVPNEHKIIVGGLLNSNITQKINKIPLLGDLPLIGKIFQHRYE 428
Query: 404 NREETEIFIAATPFLV 419
E T++ I TP LV
Sbjct: 429 LVENTDLIIEITPRLV 444
>gi|171913118|ref|ZP_02928588.1| probable general secretion pathway protein D [Verrucomicrobium
spinosum DSM 4136]
Length = 888
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 67/292 (22%), Positives = 117/292 (40%), Gaps = 35/292 (11%)
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ L+ + + KV LL+ QV L I ++ Q+G +
Sbjct: 538 RIIADPLANAIIVIGPKENQDKVDLLLDKLDRKSPQVYLATVIGQLTLSDGMQMGVDYLQ 597
Query: 220 TGSSSGPSKSFAA--------------------DFGGKFVSEGGDFSVKGVLDRFSFETV 259
S+G + ++ + ++ F++ G L S +
Sbjct: 598 KFVSTGSNSGLSSAFIAGREEIITNNNVADMRDNLITTALANAKGFNIYGQLG-QSLDVF 656
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----------SSTGATSVTT 309
+ ALE + L+ P++ A++ + A TSG S + T++T
Sbjct: 657 VSALETTNNFKVLSRPSVFALNNKRAVITSGQSIPVPESSLANASSNNNGTGNVTTTITY 716
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGT 367
D + L P + G + LR+ V V ++P + TTV +P+G T
Sbjct: 717 KDVVLKLEVIPLINPDGDVTLRVAQVNDTVVGNQIVAQNNVPIIGTEQIATTVTVPTGNT 776
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+VL GL+ + ++ EGIP+LS+IP LG LFR ++E E+ I P +V
Sbjct: 777 VVLGGLITETDKKDTEGIPVLSRIPGLGRLFREDVTSKERKELVIFIQPMVV 828
>gi|254422445|ref|ZP_05036163.1| Bacterial type II and III secretion system protein [Synechococcus
sp. PCC 7335]
gi|196189934|gb|EDX84898.1| Bacterial type II and III secretion system protein [Synechococcus
sp. PCC 7335]
Length = 702
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 51/264 (19%), Positives = 97/264 (36%), Gaps = 20/264 (7%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
QV + + + +V + G Q S + ++S V+ G
Sbjct: 446 RRRQVAVNLRVIDVNLNDSDSFGSQFSFGLGDTAITQSGGIGLINFGVAGGALGI----- 500
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------ 305
F L A +++ + + +PTL GQ+A+ + + +
Sbjct: 501 -ARQFLAQLEASVQSSNAKIVTDPTLVIQEGQTAAVQLTQEVVTNITTDIETTEVGVLRT 559
Query: 306 -SVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY---RVRKADTTV 360
+ D G+ L + G + L + +S P N G + + +
Sbjct: 560 VTFEKEDAGLNLQVQIDRIDDNGFVTLAVAPSISAPTDTFNIGTEEAVLLANRQLTSGQI 619
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G T+VL+G++++ + +P+L IP+LGALFRNS E+ + TP +
Sbjct: 620 RVRDGQTLVLSGIIQESDRNTVTKVPILGDIPLLGALFRNSDRENIRRELIVLLTPQV-- 677
Query: 421 PVAMRDLSRPDDHYSVEDDAKAFF 444
+ D S Y +D +
Sbjct: 678 -MNDSDQSVYGYGYVPSEDVQQLL 700
>gi|116747987|ref|YP_844674.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB]
gi|116697051|gb|ABK16239.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB]
Length = 636
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 7/249 (2%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--FAADFGGKFVSE 241
++N L+ QV ++ I + ++ + +G G + S + F +
Sbjct: 387 LLNRLD-RPTSQVLIEARIITLTSEVKRSLGMNLGFGGDTPNHSATVPFTDFLINSPPAN 445
Query: 242 GGDFSVKGVLDRFSF--ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
++ ++ + + ALE A IR +A P + ++ A + G Q Y V
Sbjct: 446 LFALNLAQMVGTTLLKVDLTISALETADEIRIMAAPRVLTMNNVKAVISQGVQIPYLKVG 505
Query: 300 SS-TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKAD 357
+ + T D + L TP + ++ + I+ + EP V P RK
Sbjct: 506 DTASNITGTDFKDAVLELAVTPHITPDHKVRMTIEAKQDEPSSTVTGAQGQPGIDTRKIS 565
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T + + G IV+ G++++ + K P LS +PILG LF+++ + + EI I P
Sbjct: 566 TELLVDDGNIIVIGGIIRNRDEAKKTATPGLSDVPILGRLFKSNEVDAQRNEILIFICPK 625
Query: 418 LVKPVAMRD 426
+V D
Sbjct: 626 IVDVTKPSD 634
>gi|149200052|ref|ZP_01877077.1| ComE [Lentisphaera araneosa HTCC2155]
gi|149136810|gb|EDM25238.1| ComE [Lentisphaera araneosa HTCC2155]
Length = 813
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 50/304 (16%), Positives = 103/304 (33%), Gaps = 54/304 (17%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSF 230
K++++ L Q++++ +V + +++GF TG + + +
Sbjct: 493 TNTAANIQLIKRIIDELG-RPSAQISVETKFIDVDFNTTQELGFMWRWTGPRTPNHTLTG 551
Query: 231 AADFGGKFVSEGGD----------------------FSVKGVLDRFSFETVLHALERATA 268
F + V + ++ AL+++
Sbjct: 552 DRIFAQSNDGATAAERFDNNIRGINEIVTSQEGPVQLAADLVFGNQELQMMVRALDQSDT 611
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHF 318
L+ P SG + + T T D GV+L
Sbjct: 612 SEVLSSPNAVTQSGNTVVLRVVEERFLPEEWEEAQLDADAIIPTTPTFGEARDIGVILEV 671
Query: 319 TP-TVLSPGRIGLRIQTEV-----------SEPVIGVNAGDMPSY--------RVRKADT 358
TP I + + + S+ ++ P++ +R+ +T
Sbjct: 672 TPEVSADNNTISMDLNPQQVELLGYDTELNSDLTNFTDSITYPNFFNYAMPIVSIRQVET 731
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
++ G T+++ GL+K+ + + + IP +S IP LG F+N E+T + I T L
Sbjct: 732 RAQIWDGETLLIGGLVKETVYSVDDSIPYVSDIPYLGRFFQNKGERSEKTNLLIFVTGRL 791
Query: 419 VKPV 422
+ PV
Sbjct: 792 ISPV 795
>gi|294665979|ref|ZP_06731242.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292604227|gb|EFF47615.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 607
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 19/241 (7%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GG 243
+ TI E+R ++ +G G G F G GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGG 429
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ T + ALE + ++ P + + A Q + ++
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489
Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ GV L P+V+ G++ L ++ E + +P + T
Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G ++++AG D + +P LSKIP+LG LF++ + + + TP +V
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606
Query: 421 P 421
P
Sbjct: 607 P 607
>gi|254442891|ref|ZP_05056367.1| Bacterial type II and III secretion system protein
[Verrucomicrobiae bacterium DG1235]
gi|198257199|gb|EDY81507.1| Bacterial type II and III secretion system protein
[Verrucomicrobiae bacterium DG1235]
Length = 842
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 66/374 (17%), Positives = 114/374 (30%), Gaps = 94/374 (25%)
Query: 142 SDTVVLHGMVRTIQDSQRAVELSE-----------TFLSQSGRNQYANSSSKKVMNLLN- 189
D V G+ Q + ++ + + S + +++ N+LN
Sbjct: 435 GDRVRDQGVATDAQTIRNFLQQAGVDFVATEGSTLAYDGSSMIVTQTRRNIERIRNILNR 494
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------------------- 223
QV ++ E++ L ++GF I
Sbjct: 495 YTDVKQVEIEAKFLEIQEGSLDELGFDWVIDERGSPNDPQYETGEVYRSSMRTLAQAAAP 554
Query: 224 --------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
+V G ++ + + AL + +
Sbjct: 555 SSVSSSILVDGEVIDNIDAPDLPGSNLLGAGAVPFTNVIGNINSVNLNVAIRALSQQSGS 614
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----------------------GATS 306
L+ P +T +SG A + Y T S T
Sbjct: 615 DLLSAPKVTVLSGNEAKINVSQEFRYPTRYSDTESDVGSTSGSLTGGSAGVTITPGTPED 674
Query: 307 VTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGD------------------ 347
T + GV L TP V I L + V+E V G
Sbjct: 675 FVTRNVGVELAVTPIVEEDDYSITLDLNPRVTEFEGFVEYGGPSIAISGGRTVKTPSGFY 734
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P + VR+ +T V + G T+V+ G+ ++D+ + + IP L IP +G LFR+ + +
Sbjct: 735 QPIFAVREVETKVTIWDGATVVMGGMTREDVVTVNDKIPFLGDIPFVGRLFRSEGESSAK 794
Query: 408 TEIFIAATPFLVKP 421
+ I T LV P
Sbjct: 795 RNLLIFVTANLVSP 808
>gi|307610026|emb|CBW99559.1| type II protein secretion LspD [Legionella pneumophila 130b]
Length = 791
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 66/430 (15%), Positives = 142/430 (33%), Gaps = 41/430 (9%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L + P + I A N V K +I + + +IL++ D + S+
Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371
Query: 76 KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
+ + G +G + + + +
Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
L T N + T + + + + + T + K
Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRTLK 490
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
V++ L+I Q+ ++ +AEV + +G + G
Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293
G + F+ ++AL R L+ P++ + + A G Q +
Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350
++++ T+ + + L+ P + I L+I + + P+
Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 658
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ +
Sbjct: 659 FNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718
Query: 411 FIAATPFLVK 420
+ P +++
Sbjct: 719 MVFIKPIILR 728
>gi|289804655|ref|ZP_06535284.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 465
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 57/316 (18%), Positives = 111/316 (35%), Gaps = 53/316 (16%)
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
L+ L++ A NI++ DT L G V I+ +A+++++
Sbjct: 156 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 206
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
V L + I ++ + L+++G S + G
Sbjct: 207 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 235
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ + S LD F ++ALE ++ P L A F + K
Sbjct: 236 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 295
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSY 351
+ ++ YG ++ P + G+I + + E + + +P
Sbjct: 296 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 353
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
T +P G ++++ G +D + IP+L K+P++G+LFR S N+
Sbjct: 354 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRV 413
Query: 412 IAATPF-LVKPVAMRD 426
P +V P+
Sbjct: 414 FMIEPKEIVDPLTPDA 429
>gi|213865044|ref|ZP_03387163.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 501
Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats.
Identities = 57/316 (18%), Positives = 111/316 (35%), Gaps = 53/316 (16%)
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
L+ L++ A NI++ DT L G V I+ +A+++++
Sbjct: 192 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 242
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
V L + I ++ + L+++G S + G
Sbjct: 243 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 271
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ + S LD F ++ALE ++ P L A F + K
Sbjct: 272 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 331
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSY 351
+ ++ YG ++ P + G+I + + E + + +P
Sbjct: 332 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 389
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
T +P G ++++ G +D + IP+L K+P++G+LFR S N+
Sbjct: 390 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRV 449
Query: 412 IAATPF-LVKPVAMRD 426
P +V P+
Sbjct: 450 FMIEPKEIVDPLTPDA 465
>gi|188574359|ref|YP_001911288.1| HrpA type III secretion outer membrane pore, YscC/HrcC family
[Xanthomonas oryzae pv. oryzae PXO99A]
gi|188518811|gb|ACD56756.1| HrpA type III secretion outer membrane pore, YscC/HrcC family
[Xanthomonas oryzae pv. oryzae PXO99A]
Length = 591
Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 84/241 (34%), Gaps = 19/241 (7%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSIT-------------GSSSGPSKSFAADFGGKFVSEGG 243
+ TI E+R ++ +G G A G GG
Sbjct: 354 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGAATDGATTPVGG 413
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ T + ALE + ++ P + + A Q + ++
Sbjct: 414 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 473
Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ GV L P+V+ G++ L ++ E + +P + T
Sbjct: 474 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEIKTQA 530
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G ++++AG D + +P LSKIP+LG LF++ + + + TP +V
Sbjct: 531 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 590
Query: 421 P 421
P
Sbjct: 591 P 591
>gi|262066840|ref|ZP_06026452.1| general secretion pathway protein D [Fusobacterium periodonticum
ATCC 33693]
gi|291379452|gb|EFE86970.1| general secretion pathway protein D [Fusobacterium periodonticum
ATCC 33693]
Length = 514
Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats.
Identities = 56/310 (18%), Positives = 112/310 (36%), Gaps = 37/310 (11%)
Query: 126 TLRRFIADSNIRV--EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+L D ++V E + + V ++ + V +E + ++ + +
Sbjct: 212 SLFNVSPDEVLKVLHETFGENI----KVSSLSKVNKLVVSAERDILENAISIIEDID--- 264
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVS 240
QV + I ++ ++ +++GF S S +
Sbjct: 265 -------KNPKQVKISSQILDISNNLFEELGFDWVYKQNVASEERNSLTAIILGKAGLNG 317
Query: 241 EGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL---- 294
G ++ + S T L+ LE + + PTL SG+ F + +
Sbjct: 318 IGSTLNIVRQFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVK 377
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV- 353
+ + T + G+++ P + I L I E+S+ N ++
Sbjct: 378 TTRENKNDRHTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSG 437
Query: 354 -----------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
R T V + G TI++ GL K Q ++ IP+L IPI+ F+N+
Sbjct: 438 TYNSEGGSKVGRALTTKVRVKDGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTT 497
Query: 403 FNREETEIFI 412
RE ++++I
Sbjct: 498 KKRENSDMYI 507
>gi|167033463|ref|YP_001668694.1| type II and III secretion system protein [Pseudomonas putida GB-1]
gi|166859951|gb|ABY98358.1| type II and III secretion system protein [Pseudomonas putida GB-1]
Length = 621
Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats.
Identities = 65/437 (14%), Positives = 139/437 (31%), Gaps = 71/437 (16%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV------ 80
P E A + + + I+ +K + + + V + D V
Sbjct: 187 PVTLEFRDANLKTIFEVLSQVAGINFIFDKDLRPDMK---ATIFVREVRIEDAVALLLEQ 243
Query: 81 ------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
+ + T+ ++ + + + ++ L D ++ +
Sbjct: 244 NQLRQKIVNDNTVMVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
++ V+ +T+ + ++ +++ ++ + + + +
Sbjct: 299 DVFVDERLNTLTMRDTPDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 349
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
+G Q T + + S+
Sbjct: 350 ----------------LDLGLQWPNTFGVLSNDGKPVSVLDQLKGIDSSRISI-----SP 388
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308
+ + ++A I TLA P + + + A G + + SVT
Sbjct: 389 APQAKINA--SDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365
D G+ L PTV + +++ EVS R A T++ L G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ +
Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 564
Query: 426 DLSRPDDHYSVEDDAKA 442
Y D +
Sbjct: 565 --------YQSPSDMEF 573
>gi|330963059|gb|EGH63319.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 649
Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+K++ L++ + + + I ++ R+ L ++ + + S G GG + +
Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFD 356
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G S + + F LHALE + + P++ + Q A S
Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
A + G L P L ++ + + E + + PS R T
Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
+ G++V+ G + IPLL IP +G LF++ + E TP
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534
Query: 418 LV 419
L+
Sbjct: 535 LI 536
>gi|262195825|ref|YP_003267034.1| general secretion pathway protein D [Haliangium ochraceum DSM
14365]
gi|262079172|gb|ACY15141.1| general secretion pathway protein D [Haliangium ochraceum DSM
14365]
Length = 842
Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats.
Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 27/255 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-- 250
QV ++ I EV+ D +G S + S
Sbjct: 450 RRQVFIEAMILEVQTDSGLDLGASFHGGQLSDDGTLLLGGLQTSDLQSIVPGTLAASSGL 509
Query: 251 ----------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
+ SF + AL ++ + L+ P + + + A + G
Sbjct: 510 LGGVLGPLLNTQELLGVSIPSFGVLFQALATSSNVNVLSSPHIVTTNNEEAEISVGQNIP 569
Query: 295 YKTVSS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
Y++ S S SV D + L TP + + + L I E+S+ A
Sbjct: 570 YQSGLSGLPTAGTGVSFPVQSVQRQDVALTLKITPHINASDMVTLEIDQEISDIASPDFA 629
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
G PS+ R TTV + +IV+ GL+ D + + +PLL +P+LG F+ + +
Sbjct: 630 GLGPSWSKRTVKTTVVVRDQQSIVIGGLMSDRMTYNESKVPLLGDLPLLGYFFKFTERQK 689
Query: 406 EETEIFIAATPFLVK 420
+T + I TP+++K
Sbjct: 690 SKTNLLILLTPYVIK 704
>gi|260772068|ref|ZP_05880985.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP
69.14]
gi|260612935|gb|EEX38137.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP
69.14]
Length = 573
Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats.
Identities = 70/421 (16%), Positives = 142/421 (33%), Gaps = 45/421 (10%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
+ I + ++ ++ ++ + V Q VL V R
Sbjct: 163 FQDIPVRNVLQLIADYNQFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
G ++ + + R L I S + +++ +
Sbjct: 219 ------VEGNVILVAPKAELDLREKQQLEKARLAEELGELQSAIIKISFAKASDIAEMIG 272
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V + + T +++++ L+I + QV ++ I V
Sbjct: 273 GTGAVNMLSERGSISIDERTNALLIRELPENIHVIREIISALDIPVK-QVQIEARIVTVN 331
Query: 207 RDILKQIGFQHSITGSSSGPSKSFA--------------------------ADFGGKFVS 240
L ++G + ++ + + + +
Sbjct: 332 EGNLDELGIRWGVSSTRGNNTVGGSIEGNLTGIGLYQPEDGSEMINNFLNVNLGATAANA 391
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
F V + + L A++R + ++ P L + + A G + Y S
Sbjct: 392 SSIAFQVAKLGSGTLLDLELSAMQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLES-S 450
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADT 358
S+GAT+V + L TP + R+ L + P + G+ + ++ T
Sbjct: 451 SSGATTVAFKKAVLSLQVTPQITPDNRLVLDLSVTQDRPGDIVKTGTGEAVAIHTQRIGT 510
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V + +G T+VL G+ + I + +PLL +P+LGALFR S ++E+ I TP +
Sbjct: 511 QVLVNNGETVVLGGIFQHSITNTVDKVPLLGDLPLLGALFRRSYQQMGKSELLIFVTPKV 570
Query: 419 V 419
V
Sbjct: 571 V 571
>gi|62184688|ref|YP_219473.1| putative general secretion protein [Chlamydophila abortus S26/3]
gi|62147755|emb|CAH63499.1| putative general secretion protein [Chlamydophila abortus S26/3]
Length = 908
Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats.
Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q G G
Sbjct: 554 VNNSIVVIGNQTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 613
Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252
+ ++ F + + +
Sbjct: 614 KVAYASGLLSNTGLANPAKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 673
Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
S +L AL++ + P + A Q ASF G ++T
Sbjct: 674 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 733
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ T ++ D GV L T+ + L+I+ +SE P A T
Sbjct: 734 TGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 792
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D ++ G+PLL+ IP+L LF + R++ I + P ++
Sbjct: 793 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLLRGLFSRTIDQRQKRNIMMFIKPKVI 852
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 853 SSFEEGTKLTNKEGYR 868
>gi|15835475|ref|NP_297234.1| general secretion pathway protein D [Chlamydia muridarum Nigg]
gi|270285655|ref|ZP_06195049.1| general secretion pathway protein D [Chlamydia muridarum Nigg]
gi|270289664|ref|ZP_06195966.1| general secretion pathway protein D [Chlamydia muridarum Weiss]
gi|301337051|ref|ZP_07225253.1| general secretion pathway protein D [Chlamydia muridarum MopnTet14]
gi|7190887|gb|AAF39657.1| general secretion pathway protein D [Chlamydia muridarum Nigg]
Length = 759
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 51/269 (18%), Positives = 101/269 (37%), Gaps = 6/269 (2%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ V ++V + E + ++ G G + A + + F
Sbjct: 467 KKMVRIEVLLFERKLSSQRKSGLNLLRLGEEVCKQGTQAVSWANGGI-LEFLFKGGAKGI 525
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
S++ L +R A P++ ++ A + VSS Y
Sbjct: 526 VPSYDFAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSSEKDKAQYNRAQY 584
Query: 313 GVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
G+++ P + G+ + ++T+++ G N D P R V + G T++
Sbjct: 585 GIMIKILPVINIGEEDGKSFITLETDITFDSTGKNQADRPDVTRRNITNKVRIQDGETVI 644
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
+ GL + ++GIP L ++P +G LF + +TE+F+ TP ++ PV +
Sbjct: 645 IGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDATSDSQTEMFMFITPKILDNPVEEEEKL 704
Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
S + + F V+ K+A
Sbjct: 705 ECAFLASRPGENEDFLRAVVSGQQAAKQA 733
>gi|148263986|ref|YP_001230692.1| type II and III secretion system protein [Geobacter uraniireducens
Rf4]
gi|146397486|gb|ABQ26119.1| type II and III secretion system protein [Geobacter uraniireducens
Rf4]
Length = 796
Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats.
Identities = 72/386 (18%), Positives = 143/386 (37%), Gaps = 32/386 (8%)
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V + T+ ++ KN + + + L + + +R + I V
Sbjct: 244 KVLNENTIIIYTKNPEKTK-----QYEELFVQTFYLNKLEAKKAVNLIRTMLQVRKIYVN 298
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
+ +V+ I+ +Q+ +E ++ ++ SK +A
Sbjct: 299 EEMNALVIRDTPDVIEVAQKILEANDLPDAEVVLEVEVIEISKNNAESFGLALSRYAVST 358
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
AE L + ++ + + + + ++ F G + + F+F
Sbjct: 359 AAAAEGSSTFLSDV-LVPPVSTTPTNTTNTPTSNLLNYFRWRGFNGFLTVPNATFNFGKT 417
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVL 316
L TLA P + + + A F G + T SS TG + +V D GV L
Sbjct: 418 LS------NSETLANPKIRVKNREKAKFNVGQRVPITTTSSPTGGGVSVNVQYVDVGVKL 471
Query: 317 HFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
+ PT+ + +++ EVS + + + R DT + L G T ++
Sbjct: 472 NAEPTIQLNNEVSIKLSLEVSSILSKEKVGSTDSLTTVVTIGTRNLDTVLSLKDGETSII 531
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
GL++D + K+ I LL IP++G L + ++E+ +A TP +V+ +
Sbjct: 532 GGLMQDLKSKNKQKIVLLGDIPLIGPLLSQNDDTNNKSELVLAITPRIVRSI-------- 583
Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKE 456
E D AF+ + ++ K
Sbjct: 584 ---TIPEGDVAAFWSGKEDEPSTSKP 606
>gi|37520489|ref|NP_923866.1| hypothetical protein gll0920 [Gloeobacter violaceus PCC 7421]
gi|35211483|dbj|BAC88861.1| gll0920 [Gloeobacter violaceus PCC 7421]
Length = 632
Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats.
Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 15/249 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV +V I E+ +++ +I S+ + A G S F+ + R
Sbjct: 382 RQVVFEVKIVELSDAGSRELNALRTIQSGSAVSPGNTAPLSLGGLFSPPTSFATFNDIAR 441
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------GATSV 307
V++ L R + + L I+GQ AS + T++
Sbjct: 442 AI--VVINGLITENKARVVTDTKLNTITGQKASIDVQTDINLILNQLTNVSGATVNNTTL 499
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVEL 362
+T G V+ TPTV + G + + E S P P+ RK + +
Sbjct: 500 STLRAGTVVELTPTVQADGNVLAELSVESSVPQGTTTLTSSGTTVPPNIARRKVKNIILV 559
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL--VK 420
G T+ + GL++ +++ +P IP++G LF N+ + E++E+ + TP + V+
Sbjct: 560 KDGQTLEIGGLIQTTNREVITRVPFFGYIPLIGQLFSNTNVSLEQSELVVFITPRVRDVQ 619
Query: 421 PVAMRDLSR 429
P+ L
Sbjct: 620 PLPDTKLPL 628
>gi|94496757|ref|ZP_01303332.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58]
gi|94423770|gb|EAT08796.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58]
Length = 599
Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats.
Identities = 66/413 (15%), Positives = 132/413 (31%), Gaps = 33/413 (7%)
Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
+ I A + ++ + + + + + ++V V P A +V
Sbjct: 168 PPVAAIAPGRAQPLTPGGIDPYELRVFYLRYARADDTTLHTGDREVRV--PGVATIVARV 225
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
G G + ++ L+ + + + R N D
Sbjct: 226 MGDRLPIGTVGGS------YGAQQVRQSVPRLMGKGLDSVAPDASRSTPYDN----DEED 275
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-------YANSSSKKVMNLLNIAGEDQV 196
+ L G + +Q + N + + ++ L++A V
Sbjct: 276 YLGLPGQEPIVVQAQPVPQAGPRITVDPSLNAVIVRDRPENMPAYEGLVRSLDVA-PQIV 334
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGP---------SKSFAADFGGKFVSEGGDFSV 247
L+ TI ++ D L+++G G + + D G
Sbjct: 335 ELEATIIDINVDRLRELGINWRFRSGDWGALFGGDIVRRTGNPLTDSLNTGSVNRGLSLS 394
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
+ F + ALE A + ++ P L +S A F + +
Sbjct: 395 GIIGANNEFIARISALEEKGAAKVVSRPQLVTLSNVEAVFDRTRTFYVRVA--GDRQVDL 452
Query: 308 TTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSG 365
G VL P VL G+ +R+ V + + +P +T + G
Sbjct: 453 FNVTAGTVLRVNPHVLVDNGQPRIRMVVNVEDGALLDGTVDRIPVVERASVNTQALIAEG 512
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+++L GL + + IP+L +IP+LG LF++ R+ E +P +
Sbjct: 513 ESLLLGGLTVNSDMDAETAIPVLGQIPVLGELFKSRSKRRQHVERLFLISPRI 565
>gi|166714017|ref|ZP_02245224.1| HrcC [Xanthomonas oryzae pv. oryzicola BLS256]
gi|61219456|gb|AAX40633.1| HrcC [Xanthomonas oryzae pv. oryzicola]
Length = 607
Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 83/241 (34%), Gaps = 19/241 (7%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSIT-------------GSSSGPSKSFAADFGGKFVSEGG 243
+ TI E+R ++ +G G A G GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGAATDGATTPVGG 429
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ T + ALE + ++ P + + A Q + ++
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489
Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ GV L P+V+ ++ L ++ E + +P + T
Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNSQMRLDVRIEDGQL-GSNTVDGIPVITSSEIKTQA 546
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G ++++AG D + +P LSKIP+LG LF++ + N + TP +V
Sbjct: 547 FVNEGQSLLIAGYAYDADETNLNAVPGLSKIPLLGNLFKHRQKNGSRMQRLFLLTPHVVS 606
Query: 421 P 421
P
Sbjct: 607 P 607
>gi|295111311|emb|CBL28061.1| Type II secretory pathway, component PulD [Synergistetes bacterium
SGP1]
Length = 193
Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 3/178 (1%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
F+ ALE + LA P++ I G A + Y + G + +T G
Sbjct: 8 FDGAFRALEERGKGKALASPSVITIDGMEARVELTQDYPYISERDDAGNPTWSTQTVGPQ 67
Query: 316 LHFTPTVLSPGRIGL---RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
+ TP V G I L EV + + G MP R T V + G V+ G
Sbjct: 68 MTMTPRVGRDGVINLALDLETGEVIQMITGSTGEQMPRTSKRHVTTNVRVRDGEPFVIGG 127
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
L D+ + + IP+L ++P+LG LF + +T++ + P+++ P
Sbjct: 128 LFSDNKSRTRNRIPILGQLPLLGELFTYRQDEHRKTQVVMLVVPYVLDTPDAAIEQEP 185
>gi|86607978|ref|YP_476740.1| type IV pilus secretin PilQ [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556520|gb|ABD01477.1| type IV pilus secretin PilQ, putative [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 696
Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats.
Identities = 65/421 (15%), Positives = 147/421 (34%), Gaps = 71/421 (16%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
A +N+ ++ IS+ + + + + + + +T+++
Sbjct: 301 AGLNVVLNDVPPDLTISLDVQDSPLQETFNFILRL-----KQLQAQ-RRGQTVFVGQNLP 354
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
G +++ + Q + D+ + LE L + V+ ++++ + G +
Sbjct: 355 GVTGILVRNYRVNQAVATDL-----ASRLEEVLNAVAPGAQFVVDERTNSITVIG--NSR 407
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
Q A ++++ L++ QV + + ++R D + +
Sbjct: 408 QQDIAAAQIAQ----------------------LDVR-RRQVLISLRAVDIRLDKNESLS 444
Query: 215 FQHSITGSSSGPSKSFAADFGG------------KFVSEGGDFSVKGVLDRFS-----FE 257
+ A+FGG G S+ G+ + +
Sbjct: 445 VNLGGASGNFALGTLGDANFGGRPLNQPAGSSVSSIGPAGPSGSITGIFNTLNRLQQSLA 504
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVT 308
+ + + + L +P + G S+ + + + +
Sbjct: 505 LRVQSAIQNGTGKILTDPKVVVADGGSSRISIATSVPVNVETITIPQGENQPPVVTQRLQ 564
Query: 309 THDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGV-------NAGDMPSYRVRKAD-TT 359
D GV+L + + G + L IQ E+S PV + + R+ +
Sbjct: 565 REDAGVILDVSEVRIDDNGFVTLTIQPEISIPVPSQILGGGDFAGILLFNIDRRQLQASQ 624
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ L G T ++AGL++D + +P L +P+LGALFR+ N E E+ TP+++
Sbjct: 625 LRLRDGQTFIIAGLIQDRDIVDVQKVPFLGDLPLLGALFRSQSVNNERNEVVFMLTPYIM 684
Query: 420 K 420
Sbjct: 685 D 685
>gi|289663772|ref|ZP_06485353.1| HrcC protein [Xanthomonas campestris pv. vasculorum NCPPB702]
gi|289668194|ref|ZP_06489269.1| HrcC protein [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 593
Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 19/241 (7%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GG 243
+ TI EVR ++ +G G G F G GG
Sbjct: 356 QIDATIIEVRDGAMQDLGVDWRFHSQHTDVQTGDGRGGQLGFDGALSGAATQGTMTPVGG 415
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ T + ALE + ++ P + + A Q + ++
Sbjct: 416 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 475
Query: 304 ATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ GV L P+V+ S G++ L ++ E + +P + T
Sbjct: 476 D--LYNLSAGVSLRVLPSVVPGSSNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 532
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G ++++AG D + +P LSKIP++G LF++ + + + TP +V
Sbjct: 533 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLVGNLFKHRQKSGSRMQRLFLLTPHVVS 592
Query: 421 P 421
P
Sbjct: 593 P 593
>gi|192384691|dbj|BAG49616.1| HrcC [Pseudomonas viridiflava]
Length = 671
Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 15/274 (5%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G ++R V + + ++++ L+ + V + I ++ R
Sbjct: 253 RGGESKSNSNRRVVADVRNNAVLIYDDPEKRDTYQQLVQQLD-QPSNLVEIDAVILDIDR 311
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
L + + S S S G S + D F + ALE
Sbjct: 312 SQLSSLESRWSARAGSVNFGSSLL----------TGGSSTLFINDFDRFFADIQALEGQG 361
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
+A P++ + Q A T +V G L P ++ +
Sbjct: 362 VASVIARPSVLTLENQPAVIDFSRTAYITTT--GERVANVQPVTAGTSLRVIPRTIAGEQ 419
Query: 328 IG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
++ ++ + + D P + T + ++V+ G D+ + ++ +
Sbjct: 420 PNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKV 479
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P+L +P++GALF + R E TP LV
Sbjct: 480 PILGSLPVIGALFTSKRHEVSRRERLFILTPRLV 513
>gi|297623561|ref|YP_003704995.1| type II and III secretion system protein [Truepera radiovictrix DSM
17093]
gi|297164741|gb|ADI14452.1| type II and III secretion system protein [Truepera radiovictrix DSM
17093]
Length = 560
Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats.
Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 7/229 (3%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
E Q+ ++V I EV + +++G + F+ F +
Sbjct: 338 RPERQINVQVRIQEVSANASERLGLNLTAAMDR------FSTTLFSGEGGLSFVFDAQRA 391
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ F+ +L E R + + +T ++ A+ +GG + G T
Sbjct: 392 IAGFNLGAILDVYEEQGLSRRVDDSNVTVLNNGVATLQAGGTQYNYVRDEAGGVTRDE-I 450
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
YGV++ FTP V + + L + V P + G + + RKA++ + L G T+VL
Sbjct: 451 PYGVIVGFTPQVANNNSVILDLCARVDTPSLRDAEGRITEFLTRKANSRITLQPGQTVVL 510
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GLL++ + +P L IP++G LF + TE+ I T ++
Sbjct: 511 GGLLQNQVVASNRSVPGLGDIPVVGNLFSTNTATELNTELLIIVTANVL 559
>gi|85060069|ref|YP_455771.1| type III secretion apparatus InvG [Sodalis glossinidius str.
'morsitans']
gi|45504769|gb|AAS66859.1| InvG [Sodalis glossinidius]
gi|84780589|dbj|BAE75366.1| type III secretion apparatus InvG [Sodalis glossinidius str.
'morsitans']
Length = 546
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/438 (14%), Positives = 140/438 (31%), Gaps = 53/438 (12%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL- 70
+ L + P+ + +++A G+ + + + +++ + +L
Sbjct: 113 AVVALRTILPAALR-HFLQQAQLHDPRYPLRGDPGGRLLYLS-GPPMYVELVENAARLLD 170
Query: 71 -----VSDPTKADVVVHS-----PRTMYLFGKN---VGQANVILIGHDGKQMLNLDILIE 117
+ D +A+V+ S R L G+ G A VI + M
Sbjct: 171 KEPDGIHDREQAEVIPLSYTFVGDRYYALRGEKVTIPGIATVI-----ERLMRREGRSAV 225
Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
D+ + + +R E ++ +
Sbjct: 226 ADVPAPLTPAEALLPVAEVRAE----------QDVEPLPLWPVQVIANPSNNSLLVKGTG 275
Query: 178 NSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
+ ++ L+I V L + I ++ + L Q G + G
Sbjct: 276 RQVQFVRNLVRSLDIPKRH-VELSLWIIDLEKSDLDQFGINWQ--------GGARIGQRG 326
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
G +++G LD F + AL R ++ P + A F +
Sbjct: 327 GVTLNQGS----YSALDGTRFVASILALARKHRANIVSRPIILTQENVPAIFDNNRTFYT 382
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE----VSEPVIGVNAGDMPSY 351
+ + + + YG ++ P +I + + E VS + D+P
Sbjct: 383 RLL--GERSVELREVTYGTMISVLPRFSGDDQIEMVLTIEDGGEVSRRQSNPGSDDLPEV 440
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
T +P G ++++ G +D+++ + +P L IP++G LFR+ +
Sbjct: 441 GRTHISTVARVPRGKSLLIGGYTRDELRGNRARLPGLGSIPLIGGLFRHRIDKQANMVRV 500
Query: 412 IAATPF-LVKPVAMRDLS 428
P + +P+ +
Sbjct: 501 FLIQPREISEPLQQDAAA 518
>gi|12331294|emb|CAC24709.1| putative HrcS protein [Pseudomonas fluorescens]
Length = 674
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/269 (17%), Positives = 90/269 (33%), Gaps = 16/269 (5%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
+ S R + +K++ L++ + + + I ++ R+ L ++
Sbjct: 258 RASIRVSADVRNNAVLIYDLPERKALYEKLVKQLDVP-RNLIEIDAVILDIDRNELAELA 316
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ + + GG + + G S + + F L ALE + +
Sbjct: 317 SRWNFNSGNFS---------GGANLFDAGASSTLFLQNAGKFSAQLRALEGNGSASVIGN 367
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
P++ + Q A S A ++ G L P L +I +
Sbjct: 368 PSILTLENQPAVIDLSRTEYLTAT--SERAANILPITAGTSLQVIPRSLDHDGKPQIQMI 425
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ E + + PS R T + G++V+ G + IPLL I
Sbjct: 426 VDIEDGQIDVSTINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDI 485
Query: 392 PILGA-LFRNSRFNREETEIFIAATPFLV 419
P +G LF++ + TP L+
Sbjct: 486 PYIGKLLFQSHNRELSQRGRLFILTPRLI 514
>gi|51103213|gb|AAT96354.1| hrcC [Pseudomonas viridiflava]
Length = 671
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 15/274 (5%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G ++R V + + ++++ L+ + V + I ++ R
Sbjct: 253 RGGESKSNSNRRVVADVRNNAVLIYDDPEKRDTYQQLVQQLD-QPSNLVEIDAVILDIDR 311
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
L + + S S S G S + D F + ALE
Sbjct: 312 SQLSSLESRWSARAGSVNFGSSLL----------TGGSSTLFINDFDRFFADIQALEGQG 361
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
+A P++ + Q A T +V G L P ++ +
Sbjct: 362 VASVIARPSVLTLENQPAVIDFSRTAYITTT--GERVANVQPVTAGTSLRVIPRTIAGEQ 419
Query: 328 IG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
++ ++ + + D P + T + ++V+ G D+ + ++ +
Sbjct: 420 PNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKV 479
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P+L +P++GALF + R E TP LV
Sbjct: 480 PILGSLPVIGALFTSKRHEVSRRERLFILTPRLV 513
>gi|254229573|ref|ZP_04922986.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25]
gi|151937946|gb|EDN56791.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25]
Length = 458
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 14/233 (6%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+ QV ++ I E +++G + S A F + +
Sbjct: 236 RPQKQVFIEAVITETELGDSQEVGVNMDLALSE--------AGFVSQPTAIKKAVDNLLF 287
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATS 306
+ F ++ A+ + + L+ P + + + T G + T
Sbjct: 288 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 347
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
+ D GV L P V+ + + S+ V + R T V++
Sbjct: 348 IERKDVGVSLEVVPHVIGDHVVL--QIMQKSDSVTDSSIASDIITNTRTLQTVVKVKDRQ 405
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
TI L GL+ + + G+P+L +P+LGALFR+ + N + E+ + ++
Sbjct: 406 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 458
>gi|238757842|ref|ZP_04619024.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
[Yersinia aldovae ATCC 35236]
gi|238703827|gb|EEP96362.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
[Yersinia aldovae ATCC 35236]
Length = 484
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 55/283 (19%), Positives = 101/283 (35%), Gaps = 21/283 (7%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--------GEDQVTLK 199
G T S A + F + +N A + +N+ + +
Sbjct: 202 RGSAPTTNTSSPATQGLPMFSADPRQN--AVIVRDRSVNMAGYRKLISELDQRPQMIEIS 259
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
VTI +V + Q+G S S G + SF S G + + SF
Sbjct: 260 VTIIDVDAGDISQLGIDWSAAVSMGGGTLSF-----NGPDSNTGGGFSTVISNTPSFMAR 314
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
L ALE+ + L++P++ ++ A K + + G +L T
Sbjct: 315 LVALEKNSHAYILSQPSVVTLNNIQAVLDKNITFYTKL--EGDKVAKLESITTGSLLRVT 372
Query: 320 PTVLSP-GRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
P +L G+ + + + + + +P + + + L +G +++L G +
Sbjct: 373 PRLLEDKGKQNIMLSLNIQDGQQNAPISQSEPLPQVQNSEIASQATLQAGQSLLLGGFKQ 432
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
D Q++ IPLL IPI+G LFR+ +
Sbjct: 433 DKQVQVQNKIPLLGDIPIIGHLFRSDINQTNSVIRLFLIKATV 475
>gi|325927686|ref|ZP_08188914.1| HrcC protein [Xanthomonas perforans 91-118]
gi|325541887|gb|EGD13401.1| HrcC protein [Xanthomonas perforans 91-118]
Length = 607
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/289 (17%), Positives = 95/289 (32%), Gaps = 20/289 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G D+ T S ++ L+ + + TI E+R
Sbjct: 323 GGAELASDAPVIEADPRTNAILIRDRPERMQSYGTLIQQLDNR-PKLLQIDATIIEIRDG 381
Query: 209 ILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GGDFSVKGVLDRFS 255
++ +G G G F G GG +
Sbjct: 382 AMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGGTLTAVLGDAGRY 441
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
T + ALE + ++ P + + A Q + ++ + GV
Sbjct: 442 LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVS 499
Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
L P+V+ G++ L ++ E + +P + T + G ++++AG
Sbjct: 500 LRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQAFVNEGQSLLIAG 558
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
D + IP LSKIP++G LF++ + + + TP +V P
Sbjct: 559 YAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVVSP 607
>gi|78045991|ref|YP_362166.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|462304|sp|P80151|HRPA1_XANEU RecName: Full=Hypersensitivity response secretion protein hrpA1;
Flags: Precursor
gi|398109|gb|AAA27603.1| hrpA1 [Xanthomonas campestris]
gi|984886|gb|AAB08464.1| HrpA1 [Xanthomonas euvesicatoria]
gi|78034421|emb|CAJ22066.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 607
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/289 (17%), Positives = 95/289 (32%), Gaps = 20/289 (6%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G D+ T S ++ L+ + + TI E+R
Sbjct: 323 GGAELASDAPVIEADPRTNAILIRDRPERMQSYGTLIQQLDNR-PKLLQIDATIIEIRDG 381
Query: 209 ILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GGDFSVKGVLDRFS 255
++ +G G G F G GG +
Sbjct: 382 AMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGGTLTAVLGDAGRY 441
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
T + ALE + ++ P + + A Q + ++ + GV
Sbjct: 442 LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVS 499
Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
L P+V+ G++ L ++ E + +P + T + G ++++AG
Sbjct: 500 LRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQAFVNEGQSLLIAG 558
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
D + IP LSKIP++G LF++ + + + TP +V P
Sbjct: 559 YAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVVSP 607
>gi|238796118|ref|ZP_04639629.1| Possible type III secretion system protein [Yersinia mollaretii
ATCC 43969]
gi|238720063|gb|EEQ11868.1| Possible type III secretion system protein [Yersinia mollaretii
ATCC 43969]
Length = 556
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 39/262 (14%), Positives = 86/262 (32%), Gaps = 22/262 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L + I +V R + +G + G F+ + D
Sbjct: 301 RSQVELSLWIIDVVRSKVDDLGVRWEAGSIGVGGG--------------TVTFNRSTLTD 346
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
F + A+ ++ R ++ P + A F + + ++ Y
Sbjct: 347 SSMFLAQIDAISKSGNARIVSRPVILTQENVPAMFDNNTSFYTRV--EGERVATLEQVTY 404
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGT 367
G ++ P + + + + + E + +P +T + +
Sbjct: 405 GTMISVLPRLSAGNSVEMEVNIEDGGLSRDKSGKVADVEGLPQVNRTNINTVARVGRNNS 464
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+++ G +D ++ + IPLL IP++G LF+ N+++ P L+ D
Sbjct: 465 LLIGGYTRDQVEDSESQIPLLGDIPLVGNLFKYRAHNQQKMIRIFLIQPRLLDENEAWDG 524
Query: 428 SRPDDHYSVEDDAKAFFFNRVN 449
+ D+ + V
Sbjct: 525 RQFSDN-ERLTQHDSQLHGTVE 545
>gi|296123921|ref|YP_003631699.1| type II and III secretion system protein [Planctomyces limnophilus
DSM 3776]
gi|296016261|gb|ADG69500.1| type II and III secretion system protein [Planctomyces limnophilus
DSM 3776]
Length = 1469
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 60/393 (15%), Positives = 124/393 (31%), Gaps = 78/393 (19%)
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
++ N+ ++ A T +S +++ + ++ T++ +R V +
Sbjct: 928 RERKNVVFKLKNSPALAVSTAVTQFVNSQLQLSQQNPNLI-----STVEQLEREVVVVPE 982
Query: 167 FLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQI----------- 213
+ S ++ L+ QV ++ I EV D + +
Sbjct: 983 TGTNSLLISATPRYYDEITRLVMELDQAPRQVIIQALIVEVTLDNVDEFGVELGLQDSVL 1042
Query: 214 ------------------------------------GFQHSITGSSSGPSKSFAADFGGK 237
GF + + G + + G
Sbjct: 1043 FDRSVVDDLVTLTETTTSPNGTQTTTQRVVSQTAAPGFLFNNPNTPLGNNTTINPSSVGS 1102
Query: 238 ----------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
++ G + S ++ AL ++ L+ P + + Q A
Sbjct: 1103 QGLSSFSLGRVNNDLGYGGLVLSAGSESVNVLIRALASRRRLQVLSRPQIRTLDNQQAQI 1162
Query: 288 TSGGQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----- 338
G Q + G++L TP + G I + + E S+
Sbjct: 1163 QVGQQVPIVDGVQIGATGLANPQIRQDQAGIILTVTPRISPDGTIVMELIAEKSQFRGNG 1222
Query: 339 -----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
N + P + A T + +P+G T+V+ G++ + + +P + IPI
Sbjct: 1223 VPIFTDATNGNVIESPIKDISAARTAISVPNGQTVVMGGMITATDETSERKVPFIGDIPI 1282
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+G LFR + TE+ I TP ++ A +
Sbjct: 1283 VGHLFRYDSKSHVRTELLIFLTPRVISSDADSE 1315
>gi|170289478|ref|YP_001739716.1| type II and III secretion system protein [Thermotoga sp. RQ2]
gi|170176981|gb|ACB10033.1| type II and III secretion system protein [Thermotoga sp. RQ2]
Length = 387
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 95/237 (40%), Gaps = 7/237 (2%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+K + ++I QV + V + EV +D ++G SG + V+
Sbjct: 154 EKDLEKIDIPIP-QVKISVIVTEVSKDYSNELGLNSLDYSFGSGQEFNENWSATLGLVTG 212
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ L LE + A+P + SG+ AS G+ + +
Sbjct: 213 LINVQTDVFG---QILAQLKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLQAE 268
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + + D GV + P V+ + L + +VS + + + TT+
Sbjct: 269 GAVSRIESIDVGVSIDIQPRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLF 326
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G T+V++G +D Q G+P+L+KIP++ LF + + E++I +
Sbjct: 327 LKNGQTVVISGATIEDNAQTNSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKAEI 383
>gi|76817445|ref|YP_335577.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia pseudomallei 1710b]
gi|76581918|gb|ABA51392.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1710b]
Length = 630
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
++ L+I + ++ I E+ D+L++IG S
Sbjct: 369 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 427
Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + A + G + + AL+ + ++ A P + +
Sbjct: 428 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATL 487
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
A + + K ++ + + GV L P ++ G +++ V++
Sbjct: 488 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 545
Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G ++P + +T + G ++++AG D G+P LSKIP+LGALF
Sbjct: 546 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 605
Query: 399 RNSRFNREETEIFIAATPFLVKP 421
R ++ E +P ++ P
Sbjct: 606 RYHSDSQNHMERVFLLSPRIIDP 628
>gi|269968410|ref|ZP_06182426.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|269826958|gb|EEZ81276.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 450
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 14/233 (6%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+ QV ++ I E +++G + S A F + +
Sbjct: 228 RPQKQVFIEAVITETELGDSQEVGVNMDLALSE--------AGFVSQPTAIKKAVDNLLF 279
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATS 306
+ F ++ A+ + + L+ P + + + T G + T
Sbjct: 280 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 339
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
+ D GV L P V+ + + S+ V + R T V++
Sbjct: 340 IERKDVGVSLEVVPHVIGDHVVL--QIMQKSDSVTDSSIASDIITNTRTLQTVVKVKDRQ 397
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
TI L GL+ + + G+P+L +P+LGALFR+ + N + E+ + ++
Sbjct: 398 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 450
>gi|206889986|ref|YP_002248061.1| type II protein secretion protein-like protein [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741924|gb|ACI20981.1| type II protein secretion protein-like protein [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 538
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 53/257 (20%), Positives = 98/257 (38%), Gaps = 30/257 (11%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGD 244
QV ++ + EV + G S S G + S + G
Sbjct: 280 SRQVLIEAKVIEVALSKSLKYGIDWSFLREWTHGTHTWSIGGATSGFTNVIGSGDPYSKI 339
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
F +++ AL +RTL+ P ++ ++GQ++ FT G + + + + S
Sbjct: 340 QFSLTTTAIKEFSSLIKALGEFGDVRTLSNPRVSIMNGQTSLFTVGRNYSFISKAQSNVT 399
Query: 305 T------------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIG 342
T + G+++ P + G I L I VS
Sbjct: 400 TSGTGSPIITYTVETSNLLSGLIIGIVPYIDEKGEISLTITPIVSNLIEMRSATFGSSGA 459
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+P +R+ TTV++ G I++ G++K + + +PLL IP++G LF++
Sbjct: 460 ETTIQLPRVDLRELSTTVKVKDGEIIIIGGMIKKEESFSENKMPLLGDIPVVGELFKSKD 519
Query: 403 FNREETEIFIAATPFLV 419
TE+ I P ++
Sbjct: 520 KEETNTELVILLQPRII 536
>gi|31742526|gb|AAK35045.2|AF330136_1 type II protein secretion LspD [Legionella pneumophila 130b]
Length = 730
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 66/430 (15%), Positives = 142/430 (33%), Gaps = 41/430 (9%)
Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
L + P + I A N V K +I + + +IL++ D + S+
Sbjct: 254 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 310
Query: 76 KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
+ + G +G + + + +
Sbjct: 311 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 370
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
L T N + T + + + + + T + K
Sbjct: 371 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRTLK 429
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
V++ L+I Q+ ++ +AEV + +G + G
Sbjct: 430 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 477
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293
G + F+ ++AL R L+ P++ + + A G Q +
Sbjct: 478 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 537
Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350
++++ T+ + + L+ P + I L+I + + P+
Sbjct: 538 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 597
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ +
Sbjct: 598 FNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 657
Query: 411 FIAATPFLVK 420
+ P +++
Sbjct: 658 MVFIKPIILR 667
>gi|82795284|gb|ABB91653.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. tagetis]
Length = 699
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 16/265 (6%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R + +K++ L++ + + + I ++ R+ L ++ + +
Sbjct: 284 RVSADVRNNAVLIYDLPERKAMYEKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWN 342
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ GG + + G S + + F LHALE + + P++
Sbjct: 343 FNAGNVS---------GGASLFDAGTSSTMFIQNASKFSAELHALEGNGSASVIGNPSIL 393
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A S A + G L P L ++ + + E
Sbjct: 394 TLENQPAVIDLSRTEYLTAT--SERAAEILPITAGTSLQVIPRSLDHDGKPQVQMIVDIE 451
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ + PS R T + G++V+ G + IPLL IP +G
Sbjct: 452 DGQIDVSTINDTQPSVRRGNVSTQAVIAEHGSLVVGGFHGLEANDRIHKIPLLGDIPYIG 511
Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
LF++ + E TP L+
Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536
>gi|227357599|ref|ZP_03841952.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
gi|227162309|gb|EEI47313.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
Length = 571
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/254 (16%), Positives = 83/254 (32%), Gaps = 22/254 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV + + I ++ + +G + S + F
Sbjct: 318 KRQVEMSLWIIDISKSKADSLGVNWQGSYGSGKNTFFFNTASLSAV-------------S 364
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
FSF + + AL + ++ P L A F + + S+ + +
Sbjct: 365 GFSFLSKIKALSEEGEAKMVSRPILLTQENTPAIFDNNTTFYTQI--KGERVASLESTTF 422
Query: 313 GVVLHFTPTVLSPGR-----IGLRIQTEV--SEPVIGVNAGDMPSYRVRKADTTVELPSG 365
G ++ P + + + I L E + +P T + G
Sbjct: 423 GTMISVLPRISNTNQEIEMIINLEDGAEKKSDDEDREEGIEKLPVINRTNISTVARVSEG 482
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
G++++ G ++D + + IP LS IP++G F N ++ P L+
Sbjct: 483 GSLLIGGYTREDNIKAENRIPFLSAIPLVGRAFSYQSDNNKKMVRIFMLQPRLLDKTDTH 542
Query: 426 DLSRPDDHYSVEDD 439
L +H + D
Sbjct: 543 GLDSLTEHPFLPMD 556
>gi|281413054|ref|YP_003347133.1| type II and III secretion system protein [Thermotoga naphthophila
RKU-10]
gi|281374157|gb|ADA67719.1| type II and III secretion system protein [Thermotoga naphthophila
RKU-10]
Length = 387
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 95/237 (40%), Gaps = 7/237 (2%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
++ + ++I QV + V + EV +D ++G SG + V+
Sbjct: 154 EEDLKKIDIPIP-QVKISVIVTEVSKDYSNELGLNSLDYSFGSGQEFNENWSATLGLVTG 212
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ L LE + A+P + SG+ AS G+ + +
Sbjct: 213 LINVQTDVFG---QILAQLKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLQAE 268
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + + D GV + P V+ + L + +VS + + + TT+
Sbjct: 269 GAVSRIESIDVGVSIDIQPRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLF 326
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G T+V++G +D Q G+P+L+KIP++ LF + + E++I +
Sbjct: 327 LKNGQTVVISGATIEDNAQTNSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383
>gi|237803001|ref|YP_002888195.1| general secretion pathway protein D [Chlamydia trachomatis
B/Jali20/OT]
gi|231274235|emb|CAX11029.1| general secretion pathway protein D [Chlamydia trachomatis
B/Jali20/OT]
Length = 760
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174
+++A L + ++ DT V+ + + + + + +
Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432
Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217
+ + K L+ + + V ++V + E + ++ G
Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273
G + A + + GG S++ L +R A
Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330
P++ ++ A + VSS YG+++ P + G+ +
Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++T+++ G N D P R V + G T+++ GL + ++GIP L +
Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
+P +G LF + +TE+F+ TP ++ P + + + F V
Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726
Query: 450 KIYGPKEASEVEGQNYKG 467
K+A E + G
Sbjct: 727 GQQAAKQAIERKESTVWG 744
>gi|29839808|ref|NP_828914.1| type III secretion protein SctC [Chlamydophila caviae GPIC]
gi|29834155|gb|AAP04792.1| type III secretion protein SctC [Chlamydophila caviae GPIC]
Length = 909
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q G G
Sbjct: 555 VNNSIVVIGNQTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 614
Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252
+ ++ F + + +
Sbjct: 615 KVAYASGLLSNTGLANPAKATAPPLKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 674
Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
S +L AL++ + P + A Q ASF G ++T
Sbjct: 675 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 734
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ T ++ D GV L T+ + L+I+ +SE P A T
Sbjct: 735 TGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 793
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++
Sbjct: 794 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 853
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 854 SSFEEGTTLTNKEGYR 869
>gi|497225|gb|AAA74040.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium]
Length = 563
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/251 (19%), Positives = 95/251 (37%), Gaps = 21/251 (8%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ ++ L++A V L + I ++ + L+++G S G +
Sbjct: 292 EMLVKALDVAKRH-VELSLWIVDLNKSDLERLGTSWS------------GTVTIGDKLGV 338
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ S LD F ++ALE ++ P +T+ SA F + K +
Sbjct: 339 SLNQSSISTLDGSRFIAAVNALEEKKQATVVSAPGITSSGKCSAIFDNNRTFYTKLIGER 398
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKA 356
++ YG ++ P + G+I + + E + + +P
Sbjct: 399 N--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLI 456
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T +P G ++++ G +D + IP L K+P++G+LFR S N+ P
Sbjct: 457 STIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEP 516
Query: 417 F-LVKPVAMRD 426
+V P+
Sbjct: 517 KEIVDPLTPDA 527
>gi|255317692|ref|ZP_05358938.1| general secretion pathway protein D [Chlamydia trachomatis 6276s]
Length = 760
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 59/385 (15%), Positives = 128/385 (33%), Gaps = 33/385 (8%)
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETF 167
++ +++A L + ++ DT V+ + + + +
Sbjct: 366 YHIKHSDPQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSS 425
Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDIL 210
+ + + + K L+ + + V ++V + E +
Sbjct: 426 VKEGSAKYGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQ 485
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERA 266
++ G G + A + + GG S++ L
Sbjct: 486 RKSGLNLLRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQ 540
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL--- 323
+R A P++ ++ A + VSS YG+++ P +
Sbjct: 541 EDVRINASPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGE 599
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
G+ + ++T+++ G N D P R V + G T+++ GL + ++
Sbjct: 600 EDGKSFITLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRD 659
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKA 442
GIP L ++P +G LF + +TE+F+ TP ++ P + + +
Sbjct: 660 GIPFLGELPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDD 719
Query: 443 FFFNRVNKIYGPKEASEVEGQNYKG 467
F V K+A E + G
Sbjct: 720 FLRALVAGQQAAKQAIERKESTVWG 744
>gi|51103060|gb|AAT96206.1| HrcC [Pseudomonas viridiflava]
Length = 697
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/265 (16%), Positives = 85/265 (32%), Gaps = 20/265 (7%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R + +K++ L++ + + + I ++ R+ L ++ + +
Sbjct: 286 RVSADVRNNAVLIYDLPDRKAMYEKLIKELDVP-RNLIEIDAVILDIDRNELAELASRWN 344
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ G S + + F LHALE + + P++
Sbjct: 345 FKSGGVNMF-------------DAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSIL 391
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A S ++ G L P L ++ L + E
Sbjct: 392 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 449
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ + D PS R T + G++V+ G + IPLL IP +G
Sbjct: 450 DGQIDVSDINADQPSVRKGNVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIG 509
Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
LF++ E TP L+
Sbjct: 510 KLLFQSRSREINHRERLFILTPRLI 534
>gi|167947465|ref|ZP_02534539.1| general secretion pathway protein D [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 241
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/239 (24%), Positives = 91/239 (38%), Gaps = 30/239 (12%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVL---- 251
++ IAEV D K +G Q + GS SG + + G +S+ + GVL
Sbjct: 2 LVEAIIAEVSFDKTKDLGVQWIVDGSPSGNTAPVGIINLGTPKISDIAGAAAAGVLPSIP 61
Query: 252 ---------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
F ++ ALE ++ L+ P++ + Q A +
Sbjct: 62 SGTLIGLGKFFXPPGSGVDFAMLIRALESDSSSNILSTPSILTLDNQEAEIVVAKNVPFL 121
Query: 297 TVSSS---------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AG 346
T + ++ D G+ L TP + I L I+ EVS +
Sbjct: 122 TGQYASTGASSTSVNPFQTIQRQDVGLTLRVTPQINEGNAIQLSIEQEVSSIDPTTSAGT 181
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
R T V + TIVL GL+ + +QQ+ E +PLL IP +G LFR +
Sbjct: 182 TDIVTNKRTIKTVVMVEDSHTIVLGGLIDEQLQQVDERVPLLGDIPGVGVLFRARNNQQ 240
>gi|158334571|ref|YP_001515743.1| secretion system protein [Acaryochloris marina MBIC11017]
gi|158304812|gb|ABW26429.1| secretion system protein [Acaryochloris marina MBIC11017]
Length = 682
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 54/291 (18%), Positives = 96/291 (32%), Gaps = 26/291 (8%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
V + T ++ ++ +++ QV + V +V K
Sbjct: 374 EVVADARTNTITLIGTPRKVETATALLTRMDVRQR-QVAINVKFIDVNLLKGKLSNADLQ 432
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL------ERATAIRTL 272
+ S G ++ ++ F L + + L
Sbjct: 433 FRANDSLGIGFRPDANGRGGLTSIFGSGTVPIVGSGLFTLTETFLGNLFVSIQNNDAKIL 492
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS------------SSTGATSVTTHDYGVVLHFT- 319
PTL G SA Q V + + +T + GV+L+
Sbjct: 493 TNPTLLVQEGSSAQVNLTEQVFTGFVQRVSSSGSTAGATTDSTSTEPNIQNAGVILNVVV 552
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADT-TVELPSGGTIVLAGL 373
+ G + L + EVS + + R+ +T V L G TIVL G+
Sbjct: 553 DHIDDNGFVTLNLSPEVSSLSGRTFVDALSGDTAFLLQQRRVETGKVRLRDGQTIVLTGI 612
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
++D + +P+L IP+LG LFR R+ +E+ + TP +V
Sbjct: 613 IQDQDRVDVSKVPILGDIPLLGRLFRRENKTRQRSELVVLVTPQIVDDSDQ 663
>gi|76789309|ref|YP_328395.1| general secretion pathway protein D [Chlamydia trachomatis
A/HAR-13]
gi|76167839|gb|AAX50847.1| general secretion pathway protein D [Chlamydia trachomatis
A/HAR-13]
Length = 760
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174
+++A L + ++ DT V+ + + + + + +
Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432
Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217
+ + K L+ + + V ++V + E + ++ G
Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273
G + A + + GG S++ L +R A
Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330
P++ ++ A + VSS YG+++ P + G+ +
Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++T+++ G N D P R V + G T+++ GL + ++GIP L +
Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
+P +G LF + +TE+F+ TP ++ P + + + F V
Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726
Query: 450 KIYGPKEASEVEGQNYKG 467
K+A E + G
Sbjct: 727 GQQAAKQAIERKESTVWG 744
>gi|15605301|ref|NP_220087.1| general secretion pathway protein D [Chlamydia trachomatis
D/UW-3/CX]
gi|3329013|gb|AAC68174.1| Gen. Secretion Protein D [Chlamydia trachomatis D/UW-3/CX]
gi|297748702|gb|ADI51248.1| General secretion pathway protein D [Chlamydia trachomatis D-EC]
gi|297749582|gb|ADI52260.1| General secretion pathway protein D [Chlamydia trachomatis D-LC]
Length = 760
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174
+++A L + ++ DT V+ + + + + + +
Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432
Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217
+ + K L+ + + V ++V + E + ++ G
Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273
G + A + + GG S++ L +R A
Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330
P++ ++ A + VSS YG+++ P + G+ +
Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++T+++ G N D P R V + G T+++ GL + ++GIP L +
Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
+P +G LF + +TE+F+ TP ++ P + + + F V
Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726
Query: 450 KIYGPKEASEVEGQNYKG 467
K+A E + G
Sbjct: 727 GQQAAKQAIERKESTVWG 744
>gi|255311391|ref|ZP_05353961.1| general secretion pathway protein D [Chlamydia trachomatis 6276]
gi|296436106|gb|ADH18280.1| general secretion pathway protein D [Chlamydia trachomatis G/9768]
gi|296437034|gb|ADH19204.1| general secretion pathway protein D [Chlamydia trachomatis G/11222]
gi|296437966|gb|ADH20127.1| general secretion pathway protein D [Chlamydia trachomatis G/11074]
gi|297140467|gb|ADH97225.1| general secretion pathway protein D [Chlamydia trachomatis G/9301]
Length = 760
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174
+++A L + ++ DT V+ + + + + + +
Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432
Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217
+ + K L+ + + V ++V + E + ++ G
Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273
G + A + + GG S++ L +R A
Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330
P++ ++ A + VSS YG+++ P + G+ +
Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++T+++ G N D P R V + G T+++ GL + ++GIP L +
Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
+P +G LF + +TE+F+ TP ++ P + + + F V
Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726
Query: 450 KIYGPKEASEVEGQNYKG 467
K+A E + G
Sbjct: 727 GQQAAKQAIERKESTVWG 744
>gi|15836348|ref|NP_300872.1| general secretion protein D [Chlamydophila pneumoniae J138]
gi|8979189|dbj|BAA99023.1| general secretion protein D [Chlamydophila pneumoniae J138]
Length = 754
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 9/258 (3%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSEGGDFSVKG 249
+ V ++V + E + ++ G G G S S + G + S
Sbjct: 460 KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGS 519
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
+ ++ L +R A P++ ++ A + VSS
Sbjct: 520 SI-VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEM-SIAVSSDKDKAQYNR 577
Query: 310 HDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
YG+++ P + G+ + ++T+++ G N D P R V + G
Sbjct: 578 AQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGE 637
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425
T+++ GL + +GIP L IP +G LF S + TE+F+ TP +++ PV +
Sbjct: 638 TVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQ 697
Query: 426 DLSRPDDHYSVEDDAKAF 443
+ S + + +
Sbjct: 698 ERKEEALLSSRPGEREEY 715
>gi|167906931|ref|ZP_02494136.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei NCTC 13177]
Length = 588
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 97/263 (36%), Gaps = 27/263 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
++ L+I + ++ I E+ D+L++IG S
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385
Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + A + G + ++AL+ + ++ A P + +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVNALQSTSKVKIDASPLVATL 445
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
A + + K ++ + + GV L P ++ G +++ V++
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503
Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G ++P + +T + G ++++AG D G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563
Query: 399 RNSRFNREETEIFIAATPFLVKP 421
R ++ E +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586
>gi|126445154|ref|YP_001062980.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia pseudomallei 668]
gi|126224645|gb|ABN88150.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 668]
Length = 588
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
++ L+I + ++ I E+ D+L++IG S
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385
Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + A + G + + AL+ + ++ A P + +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
A + + K ++ + + GV L P ++ G +++ V++
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503
Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G ++P + +T + G ++++AG D G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563
Query: 399 RNSRFNREETEIFIAATPFLVKP 421
R ++ E +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586
>gi|218892331|ref|YP_002441198.1| Type III secretion outer membrane protein PscC precursor
[Pseudomonas aeruginosa LESB58]
gi|218772557|emb|CAW28340.1| Type III secretion outer membrane protein PscC precursor
[Pseudomonas aeruginosa LESB58]
Length = 600
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%)
Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250
++V +I ++ + L Q+G S G G G S+
Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ L+ + + PTL A + + +
Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391
Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
YG +L TP V++ G I L + E S+ +P+ DT + G
Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++++ G+ +D++ Q + +P L IP LGALFR + + P LV
Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLVD 505
>gi|53722417|ref|YP_111402.1| type III secretion system protein [Burkholderia pseudomallei
K96243]
gi|167820148|ref|ZP_02451828.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei 91]
gi|52212831|emb|CAH38865.1| putative type III secretion system protein [Burkholderia
pseudomallei K96243]
Length = 588
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
++ L+I + ++ I E+ D+L++IG S
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385
Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + A + G + + AL+ + ++ A P + +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
A + + K ++ + + GV L P ++ G +++ V++
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503
Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G ++P + +T + G ++++AG D G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563
Query: 399 RNSRFNREETEIFIAATPFLVKP 421
R ++ E +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586
>gi|77918480|ref|YP_356295.1| putative secretion pathway protein [Pelobacter carbinolicus DSM
2380]
gi|77544563|gb|ABA88125.1| putative secretion pathway protein [Pelobacter carbinolicus DSM
2380]
Length = 606
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 52/334 (15%), Positives = 107/334 (32%), Gaps = 44/334 (13%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTI 202
G Q+ A+ L+ + + A S + ++N + +QV L+V I
Sbjct: 278 GEQSRQQEDDEAL-LAVLTVFKRNNCIVARSLDEGLLNEMGRIIEALDTPTNQVLLEVRI 336
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
Q+ + G G ++ + D F +
Sbjct: 337 L--------QLNLNDGFESFFEFEYEGGDNTLGLLGTKALGATTLNYLFDNDRFRARIAL 388
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------------TSVTT 309
E+ + ++ P L A + F G + + +S +
Sbjct: 389 YEKEGRLEVVSTPFLMAANNSKVEFFVGEETPLRGEVTSETTTIKDTGTTLTTFTQEIEE 448
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------------MPSYRVRKA 356
+ G + T + + G + L E+S P + + + +
Sbjct: 449 EELGTDVEMTTFINADGTVTLDFDAEISSPQLAYSTVQAVNDITGEILEYPIDGTTKSEI 508
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ SG +I + G++++ I +P+L IP +G FR + +TE I TP
Sbjct: 509 KAILSARSGQSIAIGGIIRETIDDSIAKVPVLGDIPGVGFFFREVEKTKSKTETVILLTP 568
Query: 417 FLV-KPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
++ P +S+ + + + R N
Sbjct: 569 HVIMHPALAGQVSQ--EFLGRKSSHEQVTVGREN 600
>gi|282899176|ref|ZP_06307153.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis
raciborskii CS-505]
gi|281195931|gb|EFA70851.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis
raciborskii CS-505]
Length = 522
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/245 (20%), Positives = 100/245 (40%), Gaps = 19/245 (7%)
Query: 192 GEDQVTLKVTIAEVRR------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
QV + + I +V + G + + G + + S
Sbjct: 276 RRRQVKVNLKIIDVNLWGIQNYNSSFSFGIGDNFFSNDQGIATFNFGNQRPFTGSGSVPA 335
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------V 298
S+ G+ +R F L A + L +P+L GQ+A+ Q + +
Sbjct: 336 SLGGLPNR--FLAFLQAQVTNGNAKILTDPSLIVQEGQNANVKLTQQVIGQERITRIDTP 393
Query: 299 SSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRK 355
+S + + G+ ++ + G + L + V PV + G + R
Sbjct: 394 GNSREERIIEKEEVGLTVNVRVERIDDNGFVSLSVAPVVKSPVNSESPGAGKVTLIAERS 453
Query: 356 ADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
++ + L G T++L+G+++D + + +PLL IP+LGALFR++ +RE E+ +
Sbjct: 454 LNSGLIRLRDGQTLLLSGIIQDQDRTVVTKVPLLGDIPLLGALFRSTNKDRERREVIVLL 513
Query: 415 TPFLV 419
TP ++
Sbjct: 514 TPRII 518
>gi|15618724|ref|NP_225010.1| general secretion protein D [Chlamydophila pneumoniae CWL029]
gi|16752225|ref|NP_445593.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39]
gi|33242175|ref|NP_877116.1| general secretion pathway protein D precursor [Chlamydophila
pneumoniae TW-183]
gi|4377127|gb|AAD18953.1| General Secretion Protein D [Chlamydophila pneumoniae CWL029]
gi|7189969|gb|AAF38829.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39]
gi|33236686|gb|AAP98773.1| general secretion pathway protein D precursor [Chlamydophila
pneumoniae TW-183]
Length = 754
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 9/258 (3%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSEGGDFSVKG 249
+ V ++V + E + ++ G G G S S + G + S
Sbjct: 460 KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGS 519
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
+ ++ L +R A P++ ++ A + VSS
Sbjct: 520 SI-VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEM-SIAVSSDKDKAQYNR 577
Query: 310 HDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
YG+++ P + G+ + ++T+++ G N D P R V + G
Sbjct: 578 AQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGE 637
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425
T+++ GL + +GIP L IP +G LF S + TE+F+ TP +++ PV +
Sbjct: 638 TVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQ 697
Query: 426 DLSRPDDHYSVEDDAKAF 443
+ S + + +
Sbjct: 698 ERKEEALLSSRPGEREEY 715
>gi|291086622|ref|ZP_06356285.2| type III secretion outer membrane pore, YscC/HrcC family
[Citrobacter youngae ATCC 29220]
gi|291067473|gb|EFE05582.1| type III secretion outer membrane pore, YscC/HrcC family
[Citrobacter youngae ATCC 29220]
Length = 505
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/302 (15%), Positives = 110/302 (36%), Gaps = 23/302 (7%)
Query: 130 FIADSNIRVEMVSDTVVL-HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL- 187
I + ++++ + G T ++ + + + Q A + +N+
Sbjct: 205 VIPGVVSVLREMNNSQAVNSGATPTQLNAGQQTVDNNGPTFSADPRQNAVVVRDRDINMP 264
Query: 188 LNIAGEDQ-------VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
+ Q + + V+I +V + L +G + G + + +
Sbjct: 265 MYQRLISQLDHRQDAIEITVSIIDVNAEDLGALGIDWAANADIGGMNLQLNTNL-----A 319
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
GG ++ + + F + ALE+ + + L++P++ ++ A K V
Sbjct: 320 SGGGYATSVINNGSDFMVKVSALEQKSQAKILSQPSVVTLNNVQAVLDKNTTFYTKLV-- 377
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGR----IGLRIQTE---VSEPVIGVNAGDMPSYRV 353
+ + G ++ TP V+ + L + + + V A MP +
Sbjct: 378 GDKIAQLASITSGTLMQVTPRVVKDDEGTAEVLLLLSIQDGSQQQSSAVVAADAMPQVQN 437
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
+ DT L SG +++L G ++D + IP+L I +G F++ + +T
Sbjct: 438 SEIDTQATLKSGQSLLLGGFIQDQDIVTERKIPILGDIYWIGNFFKSKETTKIQTVRLFL 497
Query: 414 AT 415
Sbjct: 498 IK 499
>gi|254240060|ref|ZP_04933382.1| Type III secretion outer membrane protein PscC precursor
[Pseudomonas aeruginosa 2192]
gi|126193438|gb|EAZ57501.1| Type III secretion outer membrane protein PscC precursor
[Pseudomonas aeruginosa 2192]
Length = 600
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%)
Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250
++V +I ++ + L Q+G S G G G S+
Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ L+ + + PTL A + + +
Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391
Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
YG +L TP V++ G I L + E S+ +P+ DT + G
Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++++ G+ +D++ Q + +P L IP LGALFR + + P L+
Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 505
>gi|51103005|gb|AAT96152.1| HrcC [Pseudomonas viridiflava]
Length = 697
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/265 (16%), Positives = 85/265 (32%), Gaps = 20/265 (7%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R + +K++ L++ + + + I ++ R+ L ++ + +
Sbjct: 286 RVSADVRNNAVLIYDLPDRKAMYEKLIKELDVP-RNLIEIDAVILDIDRNELAELASRWN 344
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ G S + + F LHALE + + P++
Sbjct: 345 FKSGGVNMF-------------DAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSIL 391
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A S ++ G L P L ++ L + E
Sbjct: 392 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 449
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ + D PS R T + G++V+ G + IPLL IP +G
Sbjct: 450 DGQIDVSDINADQPSVRKGNVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIG 509
Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
LF++ E TP L+
Sbjct: 510 KLLFQSRSREINHRERLFILTPRLI 534
>gi|313110403|ref|ZP_07796289.1| Type III secretion outer membrane protein PscC precursor
[Pseudomonas aeruginosa 39016]
gi|310882791|gb|EFQ41385.1| Type III secretion outer membrane protein PscC precursor
[Pseudomonas aeruginosa 39016]
Length = 604
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%)
Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250
++V +I ++ + L Q+G S G G G S+
Sbjct: 278 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 337
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ L+ + + PTL A + + +
Sbjct: 338 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 395
Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
YG +L TP V++ G I L + E S+ +P+ DT + G
Sbjct: 396 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 455
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++++ G+ +D++ Q + +P L IP LGALFR + + P L+
Sbjct: 456 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 509
>gi|34498052|ref|NP_902267.1| type III secretion system EscC protein [Chromobacterium violaceum
ATCC 12472]
gi|34103907|gb|AAQ60267.1| type III secretion system EscC protein [Chromobacterium violaceum
ATCC 12472]
Length = 495
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+ + V I +V L +G S + S G SF +G D +
Sbjct: 267 RKPALIEVSVMIIDVNSQDLSALGIDWSASASIGGNGISF-----NSAGQQGSDNFSTVI 321
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ F L+AL++ + L+ P++ + A K + + + +
Sbjct: 322 SNTGGFMVKLNALQQKAKAQILSRPSVVTLDNTQAVLDRNITFYTKLL--AEKVAKLESI 379
Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGG 366
G +L TP ++ G + L + + V+ +P + T L +G
Sbjct: 380 STGSLLRVTPRLVDEGGQRNVMLTLVIQDGRQAGTVSQHEPLPQTLNAEVSTQTLLKAGQ 439
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+++L G ++D+ + + IPLL IP++G LFR+++ N T
Sbjct: 440 SLLLGGFVQDEHSEGESKIPLLGDIPLIGKLFRSTQKNSRSTVRLFLIK 488
>gi|237738589|ref|ZP_04569070.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31]
gi|229424072|gb|EEO39119.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31]
Length = 514
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 93/241 (38%), Gaps = 21/241 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFVSEGGDFSVKG 249
QV + I ++ ++ +++GF + + S + G ++
Sbjct: 267 PKQVKISSQILDISNNLFEELGFDWVYRQNVASEERNSLTAIILGKAGLNGVGSSLNIVR 326
Query: 250 VLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTG 303
+ S T L+ LE + + PTL SG+ F + + + +
Sbjct: 327 QFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENKNDR 386
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
T + G+++ P + I L I E+S+ N ++
Sbjct: 387 HTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSGTYNSEGGSK 446
Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R T V + +G TI++ GL K Q ++ IP+L IPI+ F+N+ RE ++++
Sbjct: 447 VGRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENSDMY 506
Query: 412 I 412
I
Sbjct: 507 I 507
>gi|171912205|ref|ZP_02927675.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM
4136]
Length = 759
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/258 (17%), Positives = 93/258 (36%), Gaps = 29/258 (11%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSGPSKSFAADFGGKFVSE 241
Q+ L I E + G ++ + + + +
Sbjct: 444 KRPPQIILSAIIGEFTTGKDFRFGLDWVRTLEQVNDNLVIGGINKTSTTETNAMTDLAAL 503
Query: 242 GGDFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
G L + L+ LE + L P +T ++ + A+ ++G Q
Sbjct: 504 GNVADFLPALQGLTVYGKIGKHLNVFLNTLEESDRFHVLQRPYVTTLNHKKATISTGQQL 563
Query: 294 LYKTVSSSTGA----------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--I 341
+ S+G ++ + L P + + L + +
Sbjct: 564 AIPGQTYSSGIGSDPDTNGFVSNTQYIPAELKLDIVPHIYDKNEVKLEFVQQNLDIASYT 623
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
++ +P+ + TV +P+G TI+L GL+ + + K G+P+LS+IP++ LF ++
Sbjct: 624 TISGNQVPNLSTQTLSNTVVVPNGATIILGGLITERDRNNKSGVPVLSRIPLVKHLFGST 683
Query: 402 RFNREETEIFIAATPFLV 419
+E E+ I P +V
Sbjct: 684 AKTKERRELMIFVQPIIV 701
>gi|41019214|gb|AAR98526.1| HrcC [Pseudomonas syringae pv. phaseolicola]
Length = 699
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/265 (18%), Positives = 90/265 (33%), Gaps = 16/265 (6%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R +K++ L+++ + + + I ++ R+ L ++ + +
Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELFNRWN 342
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
SS G + + G S + + F + LHALE + + P++
Sbjct: 343 FNASSVGGGVNLF---------DAGTSSTMFIQNAGKFXSELHALEGNGSASVIGNPSIL 393
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A S ++ G L P L ++ L + E
Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ I PS R T + G++V+ G + IPLL IP +G
Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511
Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
LF++ + E TP L+
Sbjct: 512 KLLFQSRSRELGQRERLFILTPRLI 536
>gi|107101148|ref|ZP_01365066.1| hypothetical protein PaerPA_01002180 [Pseudomonas aeruginosa PACS2]
gi|254234815|ref|ZP_04928138.1| Type III secretion outer membrane protein PscC precursor
[Pseudomonas aeruginosa C3719]
gi|296389899|ref|ZP_06879374.1| Type III secretion outer membrane protein PscC precursor
[Pseudomonas aeruginosa PAb1]
gi|1781385|gb|AAC44774.1| PscC [Pseudomonas aeruginosa]
gi|126166746|gb|EAZ52257.1| Type III secretion outer membrane protein PscC precursor
[Pseudomonas aeruginosa C3719]
Length = 600
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%)
Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250
++V +I ++ + L Q+G S G G G S+
Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ L+ + + PTL A + + +
Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391
Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
YG +L TP V++ G I L + E S+ +P+ DT + G
Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++++ G+ +D++ Q + +P L IP LGALFR + + P L+
Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 505
>gi|312597809|gb|ADQ89924.1| RscC [Pseudomonas fluorescens]
Length = 716
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 18/303 (5%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R ++ +++ + V + I ++ R L ++ +
Sbjct: 300 RVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKL-VEIDAIILDIDRTQLAELASNWN 358
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ GG + G S + D F L ALE +A P++
Sbjct: 359 VESGDL---------IGGASMIRPGASSTVFIQDYGDFSAQLRALEGRGLASVVANPSVL 409
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A + +V G L P + G +I + ++ E
Sbjct: 410 TLENQPAVIDFSRTEYISAI--GERVATVEPITAGTSLQVVPHAIETGGRNQIQMSLEIE 467
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
PS R T + ++V+ G ++ E +P L +IP++G
Sbjct: 468 DGRIEPSEVGQQTPSVRRGVVSTQAVMGESRSLVVGGFHTEETGDNLERVPWLGRIPLIG 527
Query: 396 A-LFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
LF ++ E TP L+ V D V+ R N
Sbjct: 528 PLLFSSTTRETSRRERVFILTPRLIGDQVDPARYISALDREQVDSAMAR-LEERRNGTRP 586
Query: 454 PKE 456
Sbjct: 587 VGR 589
>gi|15596913|ref|NP_250407.1| Type III secretion outer membrane protein PscC precursor
[Pseudomonas aeruginosa PAO1]
gi|9947691|gb|AAG05105.1|AE004598_4 Type III secretion outer membrane protein PscC precursor
[Pseudomonas aeruginosa PAO1]
Length = 600
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%)
Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250
++V +I ++ + L Q+G S G G G S+
Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ L+ + + PTL A + + +
Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391
Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
YG +L TP V++ G I L + E S+ +P+ DT + G
Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++++ G+ +D++ Q + +P L IP LGALFR + + P L+
Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 505
>gi|330819413|ref|YP_004348275.1| Type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia gladioli BSR3]
gi|327371408|gb|AEA62763.1| Type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia gladioli BSR3]
Length = 596
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 49/276 (17%), Positives = 89/276 (32%), Gaps = 31/276 (11%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA- 231
+++ L++ V ++ I E+ D L+QIG S A
Sbjct: 323 DTPDRVGQYGELIRQLDVR-PQIVEIQAHIIEIDDDTLQQIGVDWRAHNSHVDFQTGNAQ 381
Query: 232 -----------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
+ G S + AL+
Sbjct: 382 QAQNSFDGGQLNPLFGTVQQAGPGNTIVNATPGGAALSAVVGGAGRYLMARVSALQSTNK 441
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-- 326
+ A P + + A+ + + K ++ + + GV L P ++
Sbjct: 442 TKIDASPLVATLDNVEATMDNTTRFFVKVAGYTSAD--LYSVSTGVSLRVLPLIVRDQDK 499
Query: 327 -RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
RI L + E + D+P + +T + G ++++AG D G+
Sbjct: 500 TRIKLNVHIEDGQLT-QQKVDDIPVITTSQINTQAFVGLGESLLIAGFTTDTQTNGVTGV 558
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
P LS+IP+LGALFR + E TP ++
Sbjct: 559 PFLSRIPLLGALFRYHSDDHSHGERVFLLTPRIIDA 594
>gi|269302606|gb|ACZ32706.1| putative general secretion pathway protein D [Chlamydophila
pneumoniae LPCoLN]
Length = 754
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 9/258 (3%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSEGGDFSVKG 249
+ V ++V + E + ++ G G G S S + G + S
Sbjct: 460 KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGS 519
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
+ ++ L +R A P++ ++ A + VSS
Sbjct: 520 SI-VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEM-SIAVSSDKDKAQYNR 577
Query: 310 HDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
YG+++ P + G+ + ++T+++ G N D P R V + G
Sbjct: 578 AQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGE 637
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425
T+++ GL + +GIP L IP +G LF S + TE+F+ TP +++ PV +
Sbjct: 638 TVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQ 697
Query: 426 DLSRPDDHYSVEDDAKAF 443
+ S + + +
Sbjct: 698 ERKEEALLSSRPGEREEY 715
>gi|148979183|ref|ZP_01815362.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3]
gi|145961941|gb|EDK27231.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3]
Length = 564
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 61/312 (19%), Positives = 119/312 (38%), Gaps = 31/312 (9%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ ++D + G V + D T + + + ++ L+I + QV
Sbjct: 253 KATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVK-QV 311
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
++ I V ++G + ++ ++ + +
Sbjct: 312 QIEARIVTVTEGNFDELGVRWGVSSTNGSFTVGGSIEGNHPSAITPYDDDGGSSVIDDYL 371
Query: 232 --ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ F V + + L AL++ + ++ P L + + A
Sbjct: 372 NVNLAATSPNASSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQ 431
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
G + Y SS+GATSV + L TP + R+ L + P V+ G+
Sbjct: 432 GTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVVKTGTGE 490
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ ++ T V + +G T+VL G+ + + + +PLL +P+LGALFR S N +
Sbjct: 491 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPLLGALFRRSYENVGK 550
Query: 408 TEIFIAATPFLV 419
+E+ I TP +V
Sbjct: 551 SELLIFVTPKVV 562
>gi|15643874|ref|NP_228923.1| general secretion pathway protein D, putative [Thermotoga maritima
MSB8]
gi|4981663|gb|AAD36193.1|AE001770_5 general secretion pathway protein D, putative [Thermotoga maritima
MSB8]
Length = 387
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/339 (17%), Positives = 115/339 (33%), Gaps = 36/339 (10%)
Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
+ + ++ + + V D L G + R + +++T+
Sbjct: 53 TVTGFITMELNEVPLEQALKMILMPGG--YVFKKMDGFYLVGSPDPANPAFRYLAVTKTY 110
Query: 168 LSQSGRNQYANSSSKKV----------MNLLNIAGED------------------QVTLK 199
+ A V N++ I + QV +
Sbjct: 111 KLKYITTADAQELLPAVYKSYVKFNEKNNMVTITAPEEIIQEFEEDLKKIDIPIPQVKIS 170
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
V + EV +D ++G SG + V+ D
Sbjct: 171 VIVTEVSKDYSNELGLNSLDYSFGSGQEFNENWSATLGLVTGIIDVQTDVFG---QILAQ 227
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
L LE + A+P + SG+ AS G+ + + + + + D GV +
Sbjct: 228 LKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLQAEGAVSRIESIDVGVSIDIQ 286
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
P V+ + L + +VS + + + TT+ L +G T+V++G +D
Sbjct: 287 PRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLFLKNGQTVVISGATIEDSA 344
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
Q G+P+L+KIP++ LF + + E++I +
Sbjct: 345 QTSSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383
>gi|116049666|ref|YP_791529.1| Type III secretion outer membrane protein PscC precursor
[Pseudomonas aeruginosa UCBPP-PA14]
gi|115584887|gb|ABJ10902.1| Type III secretion outer membrane protein PscC precursor
[Pseudomonas aeruginosa UCBPP-PA14]
Length = 600
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%)
Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250
++V +I ++ + L Q+G S G G G S+
Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ L+ + + PTL A + + +
Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391
Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
YG +L TP V++ G I L + E S+ +P+ DT + G
Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++++ G+ +D++ Q + +P L IP LGALFR + + P L+
Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 505
>gi|322646886|gb|EFY43389.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. NC_MB110209-0054]
gi|323203179|gb|EFZ88208.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 609460]
Length = 456
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 61/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + + I +G K+ ++++ V D T + + +
Sbjct: 51 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 98
Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
G A I L+ + + + N+ + + + + L +
Sbjct: 99 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 152
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ + ++ + A + ++ L++A V L + I ++ +
Sbjct: 153 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 211
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+++G S + G + + + LD F ++ALE
Sbjct: 212 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 259
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
++ P L A F + K + ++ YG ++ P + G+I
Sbjct: 260 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 317
Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ + E + +P T +P G ++++ G +D +
Sbjct: 318 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 377
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
IP L K+P++G+LFR S N+ P +V P+
Sbjct: 378 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 420
>gi|330812422|ref|YP_004356884.1| type III secretion protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380530|gb|AEA71880.1| putative type III secretion protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 716
Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 18/303 (5%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R ++ +++ + V + I ++ R L ++ +
Sbjct: 300 RVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKL-VEIDAIILDIDRTQLAELASNWN 358
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ GG + G S + D F L ALE +A P++
Sbjct: 359 VESGDL---------IGGASMIRPGASSTVFIQDYGDFSAQLRALEGRGLASVVANPSVL 409
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A + +V G L P + G +I + ++ E
Sbjct: 410 TLENQPAVIDFSRTEYISAI--GERVATVEPITAGTSLQVVPHAIETGGRNQIQMSLEIE 467
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
PS R T + ++V+ G ++ E +P L +IP++G
Sbjct: 468 DGRIEPSEVGQQTPSVRRGVVSTQAVMGESRSLVVGGFHTEETGDNLERVPWLGRIPLIG 527
Query: 396 A-LFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
LF ++ E TP L+ V D V+ R N
Sbjct: 528 PLLFSSTTRETSRRERVFILTPRLIGDQVDPARYISALDREQVDSAMAR-LEERRNGTRP 586
Query: 454 PKE 456
Sbjct: 587 VGR 589
>gi|325921916|ref|ZP_08183727.1| HrcC protein [Xanthomonas gardneri ATCC 19865]
gi|325547618|gb|EGD18661.1| HrcC protein [Xanthomonas gardneri ATCC 19865]
Length = 606
Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 82/241 (34%), Gaps = 19/241 (7%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------------- 243
+ TI E+R ++ +G +
Sbjct: 369 QIDATIIEIRDGAMQDLGVDWRFHSRRVDVQTGDGRGGQLGYDGSLSGAAAAGATAPLGG 428
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ T + ALE+ + ++ P + + A Q + S
Sbjct: 429 TLTAVLGDAGRYLMTRVSALEQTDKAKIVSTPQVATLDNVEAVMDHKQQAFVRV--SGYA 486
Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
A + GV L P+V+ G++ L ++ E + +P + T
Sbjct: 487 AADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GANTVDGIPVITSSEITTQA 545
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G ++++AG +D Q +P LSKIP++G LF++ + + + TP +V
Sbjct: 546 FVNEGQSLLIAGYAQDTDQTDLNKVPGLSKIPLVGNLFKHRQKSGSRLQRLFLLTPHIVS 605
Query: 421 P 421
P
Sbjct: 606 P 606
>gi|307297353|ref|ZP_07577159.1| type II and III secretion system protein [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306916613|gb|EFN46995.1| type II and III secretion system protein [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 3898
Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 55/327 (16%), Positives = 122/327 (37%), Gaps = 32/327 (9%)
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
G++ +++++ E+T + + V+ +V+ G+ ++ +
Sbjct: 3595 KAGEEPTDVELVYRVYHNVEELTRLIEFYGGEVLSDPVNGYIVVRGLAKS--RVDNIFDE 3652
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR--RDILKQIGFQHSITG 221
+ LSQ + QV ++ + + +I ++I I
Sbjct: 3653 IGSALSQP---------------------KKQVRIETRLVDESLIDEIQREIKTSIGINA 3691
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
G + +++ + + +R ++ P++ ++S
Sbjct: 3692 PEILIENGSVDLDFGIIDYLDITQLIDDLVNTGTVKIEADLSDRDNDSDLISSPSIVSMS 3751
Query: 282 GQSASFTSGGQHLY------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
G+ A G Y + ++ + GV L TPTV G+I L + +
Sbjct: 3752 GEEAKIHIGDTIPYLVRTIEYVEGNPVEIETIEYLNTGVELRITPTVNDDGKILLDLFIK 3811
Query: 336 VSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
VSEP V+ + + R+A++ + + G T+ + GL+ + +P LS +P +
Sbjct: 3812 VSEPEKYVDGTRTLYGEKTREANSRLIISDGNTLTIGGLVANKDTVTVNKMPFLSDLPFI 3871
Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421
G LF ++ E+ I T +V+P
Sbjct: 3872 GKLFTTENKTSDKRELVIFITAEVVEP 3898
>gi|255348953|ref|ZP_05380960.1| general secretion pathway protein D [Chlamydia trachomatis 70]
gi|255503492|ref|ZP_05381882.1| general secretion pathway protein D [Chlamydia trachomatis 70s]
Length = 760
Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174
+++A L + ++ DT V+ + + + + + +
Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432
Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217
+ + K L+ + + V ++V + E + ++ G
Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273
G + A + + GG S++ L +R A
Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330
P++ ++ A + VSS YG+++ P + G+ +
Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPIINIGEEDGKSFI 606
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++T+++ G N D P R V + G T+++ GL + ++GIP L +
Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
+P +G LF + +TE+F+ TP ++ P + + + F V
Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726
Query: 450 KIYGPKEASEVEGQNYKG 467
K+A E + G
Sbjct: 727 GQQAAKQAIERKESTVWG 744
>gi|312602771|ref|YP_004022616.1| type III secretion outer membrane pore SctC [Burkholderia
rhizoxinica HKI 454]
gi|306431574|emb|CBK52126.1| type III secretion outer membrane pore SctC [Burkholderia
rhizoxinica HKI 454]
gi|312170085|emb|CBW77097.1| type III secretion outer membrane pore SctC [Burkholderia
rhizoxinica HKI 454]
Length = 645
Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 52/261 (19%), Positives = 96/261 (36%), Gaps = 26/261 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------------------SS 223
+ +++ L++ V ++ I EV D LKQIG +
Sbjct: 386 QSLIDALDVK-PRLVEIEAHIIEVDDDALKQIGVDWRAHNSHVDLQTGNGLHSPSSYDGT 444
Query: 224 SGPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
P+ + + G +S G + + AL+ A R A P + +
Sbjct: 445 LNPTFTSNSSDGTTVISTAPLGASLTAVLGNAGRYLLARVDALQSANLARIDASPKVATL 504
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEP 339
S A + + ++ + + GV L P V GR ++++ + +
Sbjct: 505 SNAEAVMDHKTRFFVRVAGYTSAD--LYSVSTGVSLRVRPLVVEEDGRTRIKLEVHIEDG 562
Query: 340 VIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
+ +P +T + ++++AG D L+ GIPLLSKIP++G LF
Sbjct: 563 QVTNQLVDHIPVITTSTINTEAFVGQNESLLIAGYRTDSSSNLETGIPLLSKIPLIGGLF 622
Query: 399 RNSRFNREETEIFIAATPFLV 419
R R E +P ++
Sbjct: 623 RYRSDQRSHMERIFLLSPRII 643
>gi|166154787|ref|YP_001654905.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu]
gi|166155662|ref|YP_001653917.1| general secretion pathway protein D [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301336062|ref|ZP_07224306.1| general secretion pathway protein D [Chlamydia trachomatis L2tet1]
gi|165930775|emb|CAP04272.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu]
gi|165931650|emb|CAP07226.1| general secretion pathway protein D [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 760
Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 52/283 (18%), Positives = 102/283 (36%), Gaps = 14/283 (4%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ V ++V + E + ++ G G + A + + GG
Sbjct: 468 KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSW-----ASGGILEFLFKGG 522
Query: 253 R----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
S++ L +R A P++ ++ A + VSS
Sbjct: 523 AKGIVPSYDFAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYN 581
Query: 309 THDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
YG+++ P + G+ + ++T+++ G N D P R V + G
Sbjct: 582 RAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTRRNITNKVRIQDG 641
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAM 424
T+++ GL + ++GIP L ++P +G LF + +TE+F+ TP ++ P
Sbjct: 642 ETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMFITPKILDNPSET 701
Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
+ + + F V K+A E + G
Sbjct: 702 EEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWG 744
>gi|126456443|ref|YP_001075927.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia pseudomallei 1106a]
gi|134282510|ref|ZP_01769214.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 305]
gi|167742975|ref|ZP_02415749.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei 14]
gi|167849982|ref|ZP_02475490.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei B7210]
gi|167898588|ref|ZP_02485989.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei 7894]
gi|167915290|ref|ZP_02502381.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei 112]
gi|167923124|ref|ZP_02510215.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei BCC215]
gi|242313713|ref|ZP_04812730.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1106b]
gi|254186704|ref|ZP_04893220.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei Pasteur 52237]
gi|254194157|ref|ZP_04900589.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei S13]
gi|254301616|ref|ZP_04969060.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 406e]
gi|126230211|gb|ABN93624.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1106a]
gi|134246067|gb|EBA46157.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 305]
gi|157811506|gb|EDO88676.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 406e]
gi|157934388|gb|EDO90058.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei Pasteur 52237]
gi|169650908|gb|EDS83601.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei S13]
gi|242136952|gb|EES23355.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1106b]
Length = 588
Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
++ L+I + ++ I E+ D+L++IG S
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385
Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + A + G + + AL+ + ++ A P + +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
A + + K ++ + + GV L P ++ G +++ V++
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503
Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G ++P + +T + G ++++AG D G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563
Query: 399 RNSRFNREETEIFIAATPFLVKP 421
R ++ E +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586
>gi|14719865|gb|AAK73229.1| SctC [Burkholderia pseudomallei]
Length = 588
Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
++ L+I + ++ I E+ D+L++IG S
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385
Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + A + G + + AL+ + ++ A P + +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
A + + K ++ + + GV L P ++ G +++ V++
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503
Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G ++P + +T + G ++++AG D G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563
Query: 399 RNSRFNREETEIFIAATPFLVKP 421
R ++ E +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586
>gi|167724007|ref|ZP_02407243.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei DM98]
gi|254183789|ref|ZP_04890381.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1655]
gi|184214322|gb|EDU11365.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1655]
Length = 588
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
++ L+I + ++ I E+ D+L++IG S
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385
Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + A + G + + AL+ + ++ A P + +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
A + + K ++ + + GV L P ++ G +++ V++
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503
Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G ++P + +T + G ++++AG D G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563
Query: 399 RNSRFNREETEIFIAATPFLVKP 421
R ++ E +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586
>gi|289525617|emb|CBJ15095.1| general secretion pathway protein D [Chlamydia trachomatis Sweden2]
Length = 760
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 52/283 (18%), Positives = 102/283 (36%), Gaps = 14/283 (4%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ V ++V + E + ++ G G + A + + GG
Sbjct: 468 KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSW-----ASGGILEFLFKGG 522
Query: 253 R----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
S++ L +R A P++ ++ A + VSS
Sbjct: 523 AKGIVPSYDFAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYN 581
Query: 309 THDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
YG+++ P + G+ + ++T+++ G N D P R V + G
Sbjct: 582 RAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTRRNITNKVRIQDG 641
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAM 424
T+++ GL + ++GIP L ++P +G LF + +TE+F+ TP ++ P
Sbjct: 642 ETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMFITPKILDNPSET 701
Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
+ + + F V K+A E + G
Sbjct: 702 EEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWG 744
>gi|254264333|ref|ZP_04955198.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1710a]
gi|254215335|gb|EET04720.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1710a]
Length = 588
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
++ L+I + ++ I E+ D+L++IG S
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385
Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + A + G + + AL+ + ++ A P + +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATL 445
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
A + + K ++ + + GV L P ++ G +++ V++
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503
Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G ++P + +T + G ++++AG D G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563
Query: 399 RNSRFNREETEIFIAATPFLVKP 421
R ++ E +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586
>gi|319795612|ref|YP_004157252.1| type III secretion outer membrane pore, yscc/hrcc family
[Variovorax paradoxus EPS]
gi|315598075|gb|ADU39141.1| type III secretion outer membrane pore, YscC/HrcC family
[Variovorax paradoxus EPS]
Length = 613
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 59/381 (15%), Positives = 121/381 (31%), Gaps = 35/381 (9%)
Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
P A+V+ R++Y G++ G + G+ + + L
Sbjct: 226 PGVANVL----RSLY--GRHNGATGSAV-SGGGRVNGSSLSIGPNRQIKLRSGESINAPK 278
Query: 134 SNIR-VEMVSDT-VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
+ V + D L G+ + + + + ++++ +++
Sbjct: 279 MELSGVGSMGDGGATLGGVSGIGGELPQFQADTRMNAVLVRDTPARMAQYERLIASMDVR 338
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---------------------GPSKSF 230
+ ++VTI ++ D L +G + G G
Sbjct: 339 -PRLIEIEVTIMDISSDTLSSLGVDWRLHGRHYDFQTGRGDRGPLTWDGSGNEAGQIGGV 397
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
++ + G R + AL +A P + + A +
Sbjct: 398 NSNGNPVTPLGAMFTAAIGNSARNYLLARVTALASNGEANFVARPKVMTLDNTEAVLENM 457
Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--GRIGLRIQTEVSEPVIGVNAGDM 348
+ + + + G + TP ++ GR + V V +
Sbjct: 458 SEFYVRVDGFQDAG--LFSVTAGTAVRVTPLIIDEKTGRGVMMSIDIVDGDVSTQAVDRI 515
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P R R +T + G ++++AG ++ G+PLL +P +G LF+ S +
Sbjct: 516 PIVRRRSVNTQALVDEGASLLIAGYSSEERANAVTGVPLLKDLPGVGNLFKYSDKKQVNM 575
Query: 409 EIFIAATPFLVKPVAMRDLSR 429
E F TP LV P + L
Sbjct: 576 ERFYLLTPRLVSPGSSTALPT 596
>gi|310779606|ref|YP_003967939.1| type II and III secretion system protein [Ilyobacter polytropus DSM
2926]
gi|309748929|gb|ADO83591.1| type II and III secretion system protein [Ilyobacter polytropus DSM
2926]
Length = 594
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 58/351 (16%), Positives = 128/351 (36%), Gaps = 52/351 (14%)
Query: 103 GHDGKQMLNLDILIERDIAH-LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
G +++ + + + ++ + + + + + ++L G I +
Sbjct: 225 DDSGSELMTTRVTLRHALPDDVKTVVESAMREVEVSSFPKLNMIILKGTSSNILPA---- 280
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
KK++ L++ + QV + + +V+ ++ + +GF +
Sbjct: 281 --------------------KKLIEDLDLPQK-QVRITAQVLDVKDNLFETLGFDWAYDS 319
Query: 222 SS-----SGPSKSFAADFG----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
+ G S +F G S +F+ ++ L+ +
Sbjct: 320 NGTSTYTDGTSGTFLGTSTDVGIGTGYSSAIEFAQSFNGGDDVLGVSINMLQSDQDMIIS 379
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----THDYGVVLHFTPTV----LS 324
A P++ ++G+ A F++ + + + T + G+V + P +
Sbjct: 380 AVPSVVVLNGEEAEFSTTEEVIVGYEEEEDDDGNTTTTPMFEEAGLVFNVKPIIRTGADG 439
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLK 375
I L + TEVS + + D + R DTTV + SG ++ + G+ +
Sbjct: 440 GDTILLTLSTEVSNFNLVSTSADSDATTYNEDGGSKASRNIDTTVSVKSGESLFIGGMKR 499
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
D+ + IPLL +P +G LFRN E +I+I ++ D
Sbjct: 500 ADVSNVTSKIPLLGDLPFVGFLFRNEAVESELRDIYIKIRAEIITDENRED 550
>gi|237507548|ref|ZP_04520263.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei MSHR346]
gi|234999753|gb|EEP49177.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei MSHR346]
Length = 588
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
++ L+I + ++ I E+ D+L++IG S
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385
Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + A + G + + AL+ + ++ A P + +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
A + + K ++ + + GV L P ++ G +++ V++
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503
Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G ++P + +T + G ++++AG D G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563
Query: 399 RNSRFNREETEIFIAATPFLVKP 421
R ++ E +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586
>gi|255507170|ref|ZP_05382809.1| general secretion pathway protein D [Chlamydia trachomatis
D(s)2923]
gi|296435178|gb|ADH17356.1| general secretion pathway protein D [Chlamydia trachomatis E/150]
gi|296438898|gb|ADH21051.1| general secretion pathway protein D [Chlamydia trachomatis E/11023]
Length = 760
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 52/283 (18%), Positives = 102/283 (36%), Gaps = 14/283 (4%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ V ++V + E + ++ G G + A + + GG
Sbjct: 468 KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSW-----ASGGILEFLFKGG 522
Query: 253 R----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
S++ L +R A P++ ++ A + VSS
Sbjct: 523 AKGIVPSYDFAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYN 581
Query: 309 THDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
YG+++ P + G+ + ++T+++ G N D P R V + G
Sbjct: 582 RAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTRRNITNKVRIQDG 641
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAM 424
T+++ GL + ++GIP L ++P +G LF + +TE+F+ TP ++ P
Sbjct: 642 ETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMFITPKILDNPSET 701
Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
+ + + F V K+A E + G
Sbjct: 702 EEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWG 744
>gi|330444063|ref|YP_004377049.1| type III secretion protein SctC [Chlamydophila pecorum E58]
gi|328807173|gb|AEB41346.1| type III secretion protein SctC [Chlamydophila pecorum E58]
Length = 908
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 60/344 (17%), Positives = 118/344 (34%), Gaps = 52/344 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ +V++LLN QV ++V I + + G Q G+
Sbjct: 554 VNNSIVVVGNQANVDRVVSLLNGLDLPPKQVYIEVLILDTSLEKSWDFGVQWVALGNEQS 613
Query: 226 PSKSFAADFGGKFVSEG---------------------------------GDFSVKGVLD 252
+ +S F + + +
Sbjct: 614 KVAYASGLLSNSVISNTAKATVPPGVPTPGSLSLPTPAQMTGFSDMMSSSSAFGLGIIGN 673
Query: 253 --------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
+ +L AL++ + P + A Q ASF G Y+T
Sbjct: 674 VISHKGKSFLTLGGLLSALDQDGDTIIVLNPRIMAQDTQQASFFVGQNIPYQTTSTIIQE 733
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ + ++ D GV L T TV + L+I+ +SE P A T
Sbjct: 734 TGSVTQNIEYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 792
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++
Sbjct: 793 MQVPDGCFLVMSGHIRDKTTKIVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 852
Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
+ Y +A+A + P + +
Sbjct: 853 SSFEEGSDLTNKEGYRYNWEAEA---GSMQVAPRPAPECQRPPR 893
>gi|22299887|ref|NP_683134.1| putative general secretion pathway protein D [Thermosynechococcus
elongatus BP-1]
gi|22296072|dbj|BAC09896.1| tlr2344 [Thermosynechococcus elongatus BP-1]
Length = 719
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 67/374 (17%), Positives = 117/374 (31%), Gaps = 40/374 (10%)
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIAD--SNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
+G L L+E A+L T + ++V + VV T+ V
Sbjct: 334 REGDLQLGAVQLLEMYGANLPDTGQAQAPAGCEQLQVPPAAGGVVSQICRSTLLKGLEVV 393
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK--------QI 213
T + +++ +I + QV + V +V +
Sbjct: 394 GDPRTNTITLIGTPRKVEIATQLIQQFDIR-KRQVMVNVKFIDVNLSRTRTANADLITNF 452
Query: 214 GFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---SFETVLHALERATAI 269
G SS G S ++ G +F +
Sbjct: 453 GSGLWGAIFSSEGLSVIRGTTPNVGSLTPQPLPPFPGTPVGSLLSNFFAQIQLAIDTGNA 512
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS------------STGATSVTTHDYGVVLH 317
L PTL G +A + S+ ++ + GV+ +
Sbjct: 513 TILTNPTLVIQEGSAAQVNLTQEIFSGIQSTVSSQATGSGAAITSQQITPIIRPAGVIFN 572
Query: 318 FT-PTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRV-----RKADTTVELPSGGT 367
T + G I L++ EVS P + D PS R + L G T
Sbjct: 573 VTVDQIDDNGFITLQLSPEVSAPTDTYDVVFPGVDNPSIGTLLAQRRMESGRIRLRDGQT 632
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD- 426
++LAG+++D + +P+L IP+LG LFR +R+ E+ + TP ++
Sbjct: 633 LMLAGIIQDQDRSTVTKVPILGDIPLLGRLFRRESNSRQRNELVVMVTPKIIDDTQNAGF 692
Query: 427 --LSRPDDHYSVED 438
P +
Sbjct: 693 GYQYSPTPGSMPPN 706
>gi|222055737|ref|YP_002538099.1| type II and III secretion system protein [Geobacter sp. FRC-32]
gi|221565026|gb|ACM20998.1| type II and III secretion system protein [Geobacter sp. FRC-32]
Length = 805
Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats.
Identities = 69/394 (17%), Positives = 145/394 (36%), Gaps = 46/394 (11%)
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V + T+ ++ K+ + + ++ L + D +R + I V
Sbjct: 244 KVLNENTIIVYTKSPEKTK-----QYEELIVQTFYLNKLDAKKAVNLIRTMLQVKKIYVN 298
Query: 140 MVSDTVVLHGMVRTIQDSQRAVEL-------SETFLSQSGRNQYANSSSKKVMNLLNIAG 192
+ +V+ I+ +Q+ ++ + + S ++ ++
Sbjct: 299 EEMNALVIRDTPEVIEVAQKILDANDVPDAEVVLEVEVLEFTKSNAESFGLALSRYAVST 358
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ L + Q + T S++ + + + + F G + +
Sbjct: 359 AA-----AKVG--ASTFLSDVLVQPTSTSSTTTSTTTSSDNLLSLFRWRGFNGFLTVPNA 411
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVT 308
F+F L TLA P + + + A F G + T S++ +V
Sbjct: 412 TFNFGKTLS------NSETLANPKIRVKNREKAKFNVGTRVPITTTSTNGTSIGVNVNVQ 465
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVEL 362
D GV ++ PT+ + +++ EVS + + + + R DT + L
Sbjct: 466 YVDVGVKVNAEPTIQLNNEVSIKLSLEVSTILSKDKIGDASSLTTVVTIGTRNLDTVLSL 525
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
G T ++ GL++DD + K+ + +L IPI+G L N+ ++E+ +A TP +V+ V
Sbjct: 526 KDGETSIIGGLIQDDKSKSKQKVMVLGDIPIIGPLLSNNDNTNRKSELVLAITPRVVRSV 585
Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
E DA F+ R ++ K
Sbjct: 586 -----------TVPEGDAAGFWSGREDEPSLSKP 608
>gi|196233070|ref|ZP_03131918.1| type II and III secretion system protein [Chthoniobacter flavus
Ellin428]
gi|196222877|gb|EDY17399.1| type II and III secretion system protein [Chthoniobacter flavus
Ellin428]
Length = 874
Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats.
Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 14/218 (6%)
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
S + + D GG V S ++ AL R +
Sbjct: 578 VDVSSGHGILNFNNLLSQDTIRSVAGVGGSGVTGFVTAGNSLTAIVTALMNTNRFRVVTR 637
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSST------------GATSVTTHDYGVVLHFTPTV 322
P++ + + A SG + T S +SV + L P +
Sbjct: 638 PSVFTRNNKKAIIASGQEIPVPTSIQSALNAGTTVNTGLVTQSSVQFKRVALQLEVVPLI 697
Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + L + ++ + + D+P+ R T+V +P+ GT+VL GL++ + +
Sbjct: 698 NADREVSLDVLQKIDQVSGSTRIDNNDIPNIATRYVKTSVTVPNEGTVVLGGLIQQSMNK 757
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
++ GIPLLS IP LG LF ++ + TE+ I P +
Sbjct: 758 VRSGIPLLSSIPGLGYLFSSTTKEKIRTELVILIRPEV 795
>gi|284007407|emb|CBA72822.1| type III secretion outer membrane pore, YscC,HrcC,InvG
[Arsenophonus nasoniae]
Length = 539
Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats.
Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 18/245 (7%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
K++ L+I + L V I ++ + L Q+G + S G+ G + + G
Sbjct: 285 KIVEQLDITKRH-IELSVWIIDIEKKALDQLGIKWSG-GAKIGQKLGVSLNAGTS----- 337
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+D SF T + AL R ++ P + A F + K +
Sbjct: 338 -------TIDGASFMTAIFALTRNDKANIVSRPMVLTQENIPAIFDNNRTFYTKLI--GE 388
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
AT + YG + P +I + I E + +P T +
Sbjct: 389 RATDLKNVTYGTAISVLPRFTINNQIEMMITVEDGSRAGQIT-DHLPEIGRTNISTIARV 447
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKP 421
P ++++ G +D+ + ++E IPLL IP LG+LFR + ++ P ++ P
Sbjct: 448 PQNKSLLIGGYTRDEHRNIEEKIPLLGDIPYLGSLFRYNIEKKDSLVRVFLIQPREIINP 507
Query: 422 VAMRD 426
++
Sbjct: 508 LSTSA 512
>gi|182440996|dbj|BAG24121.1| HrcC [Pseudomonas cichorii]
Length = 672
Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats.
Identities = 48/273 (17%), Positives = 82/273 (30%), Gaps = 17/273 (6%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
V + I ++ R L + + S S S G + + D
Sbjct: 301 VEIDAIILDIDRTQLSALESRWSARAGSVNFGSSLL----------TGGSATLSISDFDR 350
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
F + ALE +A P++ + Q A +V + G
Sbjct: 351 FFADIQALEGQGGASVIARPSVLTLENQPAVIDFSRTAYITAT--GERVANVQSVTAGTS 408
Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
L P ++ R L I E + + P + T + ++V+ G
Sbjct: 409 LQVIPRTIAGAQANRFQLIIDIEDGQLDRSRDGET-PDVKRGTVSTQAVISENRSLVIGG 467
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
D+ Q + +PLL +P+LG LF + R E TP L+ +
Sbjct: 468 FHVDETGQHHDKVPLLGDLPVLGPLFTSKRQEVSRRERLFILTPRLIGDQIDPARYIASE 527
Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
+ + D N K A +
Sbjct: 528 N-RPQLDKALALSGSPNSRERKKIAISKAFADL 559
>gi|260770882|ref|ZP_05879811.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972]
gi|260614119|gb|EEX39309.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972]
Length = 574
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 66/369 (17%), Positives = 128/369 (34%), Gaps = 44/369 (11%)
Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
+ + K + +Q L + E ++ A ++ +M+
Sbjct: 217 VDGNVILVAPKEE-------LDRREQQQLEKARMAEELGDLQSEIIKINFAKASDIAQMI 269
Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
G V + + T + ++ L+I + QV ++
Sbjct: 270 GG----DGAVNMLSERGSISIDERTNALLLRELPDNIHVIRDIVASLDIPVK-QVQIEAR 324
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------------------A 232
I V L ++G + + ++ + +
Sbjct: 325 IVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGLYDGSSDSGDGAAIDDFLNVN 384
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ F V + + L A++R + ++ P L + Q A G +
Sbjct: 385 LAATSANASSIAFQVAKLGADTLLDLELSAMQRESKAEIISSPRLITTNKQPAYIEQGTE 444
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350
Y SS+GATSV + L TP + R+ L + P V+ G+ +
Sbjct: 445 IPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEVVKTGTGEAVA 503
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++ T V + +G T+VL G+ + + + +PLL +P+LGALFR S ++E+
Sbjct: 504 INTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGDLPLLGALFRRSYEQMGKSEL 563
Query: 411 FIAATPFLV 419
I TP +V
Sbjct: 564 LIFVTPKVV 572
>gi|182412463|ref|YP_001817529.1| type II and III secretion system protein [Opitutus terrae PB90-1]
gi|177839677|gb|ACB73929.1| type II and III secretion system protein [Opitutus terrae PB90-1]
Length = 596
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 14/227 (6%)
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF--SVKGVLDRFSFETVLHA 262
V IG + T +S + + ++ ++ V F V+ A
Sbjct: 312 VTATSGTTIGSSLTNTTNSGNSTTANETLNLLNSLTGTTTNERALNAVFTADQFGLVISA 371
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLH 317
L T + ++ PT+ ++ A G ++ + + S G++L
Sbjct: 372 LNELTTAKVVSNPTVVTLNNTEAFINIGKEYPIPNYTYNEQRGSFEVAGFTYKPIGIILK 431
Query: 318 FTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
TP V + G I L I+ EVS G +P + +KA T + L G T+ +
Sbjct: 432 VTPQVNARGFIKLMIEPEVSSFNDADSVNFGGATGARIPVIQTKKARTQISLKDGFTMGI 491
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
GL+ + +P+L IP+LG LF + + + I T
Sbjct: 492 GGLIDSQVSNGSTKVPVLGSIPVLGRLFSSKTQSTATRNLLIFLTAK 538
Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/244 (13%), Positives = 75/244 (30%), Gaps = 24/244 (9%)
Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII------LQVPVDVQDVLVSDP 74
PS ++A + S S + + P + ++ +
Sbjct: 33 PSEPAAAVTSPTDSASGDPSVAIKDADATGSATKGRSATGQDTLSVDFPDEDIRNILRN- 91
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
AD+ + + + G+A++ L +Q+ + + E + ++++
Sbjct: 92 -VADLFELN---LVIPETLQGKASIKLRDVTWRQIFQVILTPVGYTYIEEGNIITIVSNA 147
Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------------K 182
+++ E V+ V + R L +T ++S +
Sbjct: 148 SMQQEPVTTEVFIVNYARAADIMPTINSLIDTAAGGKIVVDARSNSLVITERPSRMNRIR 207
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
++ L+ DQV ++ EV ++ IG S S + GG S
Sbjct: 208 PIIEQLD-RATDQVMIESKFVEVTDGDIRNIGVNWSSLKSYKVGVGPDPENEGGVVGSFN 266
Query: 243 GDFS 246
Sbjct: 267 RTAG 270
>gi|217425412|ref|ZP_03456906.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 576]
gi|217391663|gb|EEC31691.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 576]
Length = 588
Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
++ L+I + ++ I E+ D+L++IG S
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385
Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + A + G + + AL+ + ++ A P + +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
A + + K ++ + + GV L P ++ G +++ V++
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503
Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G ++P + +T + G ++++AG D G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563
Query: 399 RNSRFNREETEIFIAATPFLVKP 421
R ++ E +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586
>gi|254254350|ref|ZP_04947667.1| Type II secretory pathway component PulD [Burkholderia dolosa
AUO158]
gi|124898995|gb|EAY70838.1| Type II secretory pathway component PulD [Burkholderia dolosa
AUO158]
Length = 702
Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats.
Identities = 75/489 (15%), Positives = 150/489 (30%), Gaps = 69/489 (14%)
Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
++ + + + + ++V V P A ++ LFGK G
Sbjct: 186 PAANGQHADIRAFRLKYGWASDFTINRSGKEVTV--PGVATILRR------LFGKGGGTT 237
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-TIQD 156
+ G+ + + IA + DT G +
Sbjct: 238 AMPSSTPLGQAARQVKLGSGLTIAVPRLDFPDISGGPR-SGGYSGDTAAGGGFSPFSNAG 296
Query: 157 SQRAVELSETFLSQSGRNQYANSSS---KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
++ + + + + ++N L+ V + VTI ++ D L +
Sbjct: 297 GDTLPQIVADPAINAVIVRDLPENMYRYQSLINQLDER-PRIVEINVTIIDINEDSLDSL 355
Query: 214 GFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--------- 254
G + G + + G ++ G S G F
Sbjct: 356 GIDWRLHTTHGDVQIGNGQNPLSGNTQYNGSGNPPLTFGIGTSETGQTGAFMPTGIALTA 415
Query: 255 --------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
T ++AL + + ++P + A+ A + Q + +S
Sbjct: 416 SIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLTQFYVQVQGYQD--SS 473
Query: 307 VTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
+ + G + TP ++ + + I + V G ++P + R
Sbjct: 474 LYSVTTGTSIKVTPMIVDDAARNAAAAAGGPQSVMMSIDIQDGNIVPGQAVSNVPVIQQR 533
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T + G ++++AG D+++ K G+P LS IP++G LF+ + + E F
Sbjct: 534 NIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLL 593
Query: 415 TPFLVK----------PVAMRDLSRPDDH----YSVEDDAKAFFFNRVNKIYGPKEASEV 460
TP +V PV + D + Y D+ A A+
Sbjct: 594 TPRVVTNASMYAPDGSPVNPGADAPADPNALSMYRPPDNDIAVPLTPKPLPGTKFRAARA 653
Query: 461 EGQNYKGAI 469
G G
Sbjct: 654 AGTGRCGRA 662
>gi|257453318|ref|ZP_05618617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R]
gi|317059850|ref|ZP_07924335.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R]
gi|313685526|gb|EFS22361.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R]
Length = 435
Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats.
Identities = 67/435 (15%), Positives = 139/435 (31%), Gaps = 62/435 (14%)
Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV------IIL 60
F ++ +F +LP E + + E+ I I +++ +
Sbjct: 30 ILFALICLFTLEEVCYAKELPKDIEMSDTTLREVLDELEGCLGIKITVDESPKDPLNLFF 89
Query: 61 QVPVDVQDVLVSDPTKAD--VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
Q +++VL + V S L + +++ L
Sbjct: 90 QEGQSIEEVLDMLGEITNKKVKKISNHEFLLEEVQI----------QKEEISKEYHLHYL 139
Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
+ L+ D I + + + ++E +
Sbjct: 140 RSKEIYDALKDLFPDIKI---------------ANLDSRNQVIVVAE---------EKKI 175
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
K+M ++I G+ QV + I ++ +D+ ++GF S +K A G +
Sbjct: 176 HEIDKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEES 234
Query: 239 VSEGG-------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
V G + + + L LE ++ + P++ G F
Sbjct: 235 VGNSGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITE 294
Query: 292 QHLYKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-- 345
+ + S + + G++L P + + L I E+S+
Sbjct: 295 EVIVGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNHK 354
Query: 346 ------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
S R T + + + I++ GL + + + +P LS IP LG LF+
Sbjct: 355 KDWNFNSQGGSKIGRSLSTRIHVKNKEMILIGGLSRFTRRNTENKVPFLSDIPGLGYLFK 414
Query: 400 NSRFNREETEIFIAA 414
+ ET+++I
Sbjct: 415 SESKKDAETDMYIKI 429
>gi|238897391|ref|YP_002923068.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465146|gb|ACQ66920.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 496
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 56/308 (18%), Positives = 99/308 (32%), Gaps = 34/308 (11%)
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKVMNLLNIA---- 191
+ V L G+V ++D ++ + S+ N L +
Sbjct: 193 QYRDQKVTLPGLVSVLRDMNSQNTIAIGENKTSGKDQSLGLPLFSADPRQNALIVRDRVV 252
Query: 192 --------------GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
++ + V I +V + Q+G + S G SF F
Sbjct: 253 NMPIYASLVKQLDVRPIEIEISVAIIDVDASDINQLGINWEASASLGGGKVSFNKGFISS 312
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
+ F ++ALE+ + R L+ P++ ++ A K
Sbjct: 313 DDGG------FSTVVGNDFMVRINALEQHSKARVLSRPSIVTLNNIQAVLDKNVTFYTKL 366
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYR 352
+ + G ++ TP ++ + L IQ P I +P
Sbjct: 367 --QGDKVAKLDSRTTGTLMQVTPRMIKDKGKEDVLLNLDIQDGQQRPSINNTTEILPQID 424
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
+ T L G ++L G ++D + K IPLL IP++G LFR+S
Sbjct: 425 NSQITTQAVLKPGQNLLLGGFIQDSQKASKHKIPLLGDIPLIGGLFRSSSKQSSSVVRLF 484
Query: 413 AATPFLVK 420
VK
Sbjct: 485 LIKAVPVK 492
>gi|117924235|ref|YP_864852.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
gi|117607991|gb|ABK43446.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
Length = 574
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 52/272 (19%), Positives = 100/272 (36%), Gaps = 39/272 (14%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADFGGKF 238
K+++ QV ++ + E+ + + G S G S ++ G
Sbjct: 299 KLVDQFKEVIGRQVLIETRVMEITLNETYRTGVDWWAFKGSIAAMMGQSGTYTGRIGSTN 358
Query: 239 VSEGGDFSVK---------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
F + V+ + ++ L++ ++ L+ PT+ A GQ
Sbjct: 359 ALSSNTFGLADISYPTTTTAATGLGLVISGANGAAIVDLLKQFGDVQVLSNPTIRARHGQ 418
Query: 284 SASFTSGGQHLYKTVSS-----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ + G + Y + S + V T G+++ TP + GR+ + +
Sbjct: 419 PSMISVGTSNTYVSESEITTTGTGTTATTQADVVVNTVFDGLMIGVTPFIKEDGRVVMTV 478
Query: 333 QTEVSEPV---------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
S+ G N +P +++ T +E SG + L GL+ + K
Sbjct: 479 HPIKSDVTASSLDLVSVGGTNQVALPEVELKEMSTILETHSGDLVFLGGLIDKEKSATKT 538
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
G+PLL IP+LG LF + + E+ I
Sbjct: 539 GMPLLGDIPLLGRLFSTDSSSDKTREMIIMLR 570
>gi|237804923|ref|YP_002889077.1| general secretion pathway protein D [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273223|emb|CAX10136.1| general secretion pathway protein D [Chlamydia trachomatis
B/TZ1A828/OT]
Length = 760
Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats.
Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174
+++A L + ++ DT V+ + + + + + +
Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432
Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217
+ + K L+ + + V ++V + E + ++ G
Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273
G + A + + GG S++ L +R A
Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330
P++ ++ A + VSS YG+++ P + G+ +
Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
++T+++ G N D P R V + G T+++ GL + ++GIP L +
Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
+P +G LF + +TE+F+ TP ++ P + + + F V
Sbjct: 667 LPGIGKLFGMGSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726
Query: 450 KIYGPKEASEVEGQNYKG 467
K+A E + G
Sbjct: 727 GQQAAKQAIERKESTVWG 744
>gi|222100424|ref|YP_002534992.1| General secretion pathway protein D [Thermotoga neapolitana DSM
4359]
gi|221572814|gb|ACM23626.1| General secretion pathway protein D [Thermotoga neapolitana DSM
4359]
Length = 387
Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 95/237 (40%), Gaps = 7/237 (2%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
++ + ++I QV + V + EV +D ++G SG + V+
Sbjct: 154 EEDLKKIDIPIP-QVKISVIVTEVSKDYSNELGLNSLDYSFGSGQEFNENWSATLGLVTG 212
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ L LE + A+P + SG+ AS G+ + +
Sbjct: 213 LINVQTDVFG---QILAQLKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLQAE 268
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + + D GV + P V+ + L + +VS + + + TT+
Sbjct: 269 GAVSRIESIDVGVSIDIQPRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLF 326
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G T+V++G +D Q G+P+L+KIP++ LF + + E++I +
Sbjct: 327 LKNGQTVVISGATIEDNAQTSSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKAEI 383
>gi|308125791|ref|ZP_05777362.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030]
gi|308114494|gb|EFO52034.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030]
Length = 559
Score = 136 bits (343), Expect = 7e-30, Method: Composition-based stats.
Identities = 60/317 (18%), Positives = 119/317 (37%), Gaps = 36/317 (11%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + + T + ++++ L+I + QV
Sbjct: 243 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 301
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
++ I + + ++G + T + + +
Sbjct: 302 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGVG 361
Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ F V + + L AL++ + ++ P L + +
Sbjct: 362 IDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKP 421
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIG 342
A G + Y SS+GATSVT + L TP + R+ L + P V+
Sbjct: 422 AYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKVVK 480
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S
Sbjct: 481 TGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSY 540
Query: 403 FNREETEIFIAATPFLV 419
N ++E+ I TP +V
Sbjct: 541 ENVGKSELLIFVTPKVV 557
>gi|171320148|ref|ZP_02909212.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria MEX-5]
gi|171094623|gb|EDT39673.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria MEX-5]
Length = 615
Score = 136 bits (343), Expect = 7e-30, Method: Composition-based stats.
Identities = 51/256 (19%), Positives = 96/256 (37%), Gaps = 30/256 (11%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----------------------PSKSF 230
+ ++ I ++ LKQ+G S S +
Sbjct: 363 PRLIEIEARIIQIDEGALKQLGVDWRAHNSHIDLQTGTGLTSQNSYANGSLNPTFGSITL 422
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+ + S+ VL ++ALE + RT A P +T + A
Sbjct: 423 PGNDSVGLPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMD 482
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA 345
+ Q + ++ + + GV L P V+ G +I L ++ V +
Sbjct: 483 NKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVEEGGRTQIKLDVRI-VDGELSQQTV 539
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
++P + +T + G +++AG D + GIP+LSK+P++GALFR++
Sbjct: 540 DNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGIPVLSKLPLVGALFRSTDRQD 599
Query: 406 EETEIFIAATPFLVKP 421
+E TP +++P
Sbjct: 600 GHSERLFLVTPRVIEP 615
>gi|62185517|ref|YP_220302.1| general secretion pathway protein D [Chlamydophila abortus S26/3]
gi|62148584|emb|CAH64356.1| probable general secretion pathway protein D [Chlamydophila abortus
S26/3]
Length = 753
Score = 136 bits (343), Expect = 7e-30, Method: Composition-based stats.
Identities = 57/297 (19%), Positives = 114/297 (38%), Gaps = 10/297 (3%)
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
S I ++ S V G V+ + S+T + A K ++ L++ +
Sbjct: 407 STISIDTASVGSVKEGSVKY----GNFIADSKTGTLIMVVEKEALPRIKMLLKKLDVP-K 461
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
V ++V + E + ++ G G S + + E G
Sbjct: 462 KMVRIEVLLFERKLSNQRKAGLNLLRLGEEVCKKTSSTISWTSSGILEFLFKGNTGSSVV 521
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
++ L +R A P++ ++ A + VS+ YG
Sbjct: 522 PGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSADKEKAQYNRAQYG 580
Query: 314 VVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
+++ P + G+ + ++T+++ G NA + P R V +P G T+++
Sbjct: 581 IMIKMLPVINVGDEDGKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVII 640
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRD 426
GL ++GIP L +IP +G LF + +TE+F+ TP ++ P+ ++
Sbjct: 641 GGLRCKHASDSQDGIPFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILDNPIEKKE 697
>gi|294781789|ref|ZP_06747122.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA]
gi|294481899|gb|EFG29667.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA]
Length = 514
Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 92/241 (38%), Gaps = 21/241 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
QV + I ++ ++ +++GF S + + G ++
Sbjct: 267 PKQVKISSQILDISNNLFEELGFDWVYRQNIASEERNTLTAIILGKAGLNGVGSTLNIVR 326
Query: 250 VLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTG 303
+ S T L+ LE + + PTL SG+ F + + + +
Sbjct: 327 QFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENKNDR 386
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
T + G+++ P + I L I E+S+ N ++
Sbjct: 387 HTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDVNSGTYNSEGGSK 446
Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R T V + +G TI++ GL K Q ++ IP+L IPI+ F+N+ RE ++++
Sbjct: 447 VGRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENSDMY 506
Query: 412 I 412
I
Sbjct: 507 I 507
>gi|315178926|gb|ADT85840.1| fimbrial assembly protein [Vibrio furnissii NCTC 11218]
Length = 557
Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats.
Identities = 66/369 (17%), Positives = 128/369 (34%), Gaps = 44/369 (11%)
Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
+ + K + +Q L + E ++ A ++ +M+
Sbjct: 200 VDGNVILVAPKEE-------LDRREQQQLEKARMAEELGDLQSEIIKINFAKASDIAQMI 252
Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
G V + + T + ++ L+I + QV ++
Sbjct: 253 GG----DGAVNMLSERGSISIDERTNALLLRELPDNIHVIRDIVASLDIPVK-QVQIEAR 307
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------------------A 232
I V L ++G + + ++ + +
Sbjct: 308 IVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGLYDGSSDSGDGAAIDDFLNVN 367
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ F V + + L A++R + ++ P L + Q A G +
Sbjct: 368 LAATSANASSIAFQVAKLGADTLLDLELSAMQRESKAEIISSPRLITTNKQPAYIEQGTE 427
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350
Y SS+GATSV + L TP + R+ L + P V+ G+ +
Sbjct: 428 IPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEVVKTGTGEAVA 486
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++ T V + +G T+VL G+ + + + +PLL +P+LGALFR S ++E+
Sbjct: 487 INTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGDLPLLGALFRRSYEQMGKSEL 546
Query: 411 FIAATPFLV 419
I TP +V
Sbjct: 547 LIFVTPKVV 555
>gi|282896843|ref|ZP_06304849.1| pilQ(type II and III secretion system protein) [Raphidiopsis
brookii D9]
gi|281198252|gb|EFA73142.1| pilQ(type II and III secretion system protein) [Raphidiopsis
brookii D9]
Length = 522
Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 19/245 (7%)
Query: 192 GEDQVTLKVTIAEVRR------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
QV + + I +V + G + + G + + S
Sbjct: 276 RRRQVKVNLKIIDVNLWGIENYNSSFSFGIGDNFLSNDQGIATFNFGNQRPFTGSGSVPT 335
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------V 298
S+ G+ +R F L A + L +P+L GQ+A+ Q + +
Sbjct: 336 SLVGLPNR--FLAFLQAQVTNGNAKILTDPSLIVQEGQNANVKLTQQVIGQEKITRIDTP 393
Query: 299 SSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRK 355
+S + + G+ ++ + G I L + V PV + G + R
Sbjct: 394 GNSREERIIEKEEVGLTVNVRVERIDDNGFISLSVAPVVKSPVNSESTGAGKVTLIAERS 453
Query: 356 ADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
++ + L G T++L+G+++D + + +PLLS IP+LGALFR+++ +RE E+ +
Sbjct: 454 LNSGLIRLRDGQTLLLSGIIQDQDRSVVTKVPLLSDIPLLGALFRSTKKDRERREVIVLL 513
Query: 415 TPFLV 419
TP ++
Sbjct: 514 TPRII 518
>gi|281356804|ref|ZP_06243295.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
gi|281316931|gb|EFB00954.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
Length = 836
Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats.
Identities = 58/314 (18%), Positives = 104/314 (33%), Gaps = 74/314 (23%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------- 226
V++ L E V + E+ +D LK++ F + +T +
Sbjct: 501 DTVIHELLDQQEPMVQILCKFIEISQDDLKELAFNYQLTVNGGAEANVMENGKYPRDVKF 560
Query: 227 --------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
+ S G V D + L AL +A ++ L
Sbjct: 561 GPNSNELLRYYRDETNSSGDSSTGNPTYNSTFSYVWQNADGTAIVANLFALNQADSMDVL 620
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS------------SSTGATSVTTHDYGVVLHFTP 320
P +T + GQ A + + S G+ T++ G+ P
Sbjct: 621 GAPRVTTLPGQPAHIEMVTERYFPEDWEIVDLPNNNTGGSGDGSNEGTSYWRGISADPQP 680
Query: 321 TVLSPGR---IGLRIQTEV------------------------------SEPVIGVNAGD 347
S I IQ E+ S+
Sbjct: 681 NFESEPTKLGIVFDIQPEIDKERRTITAHVLLPVQTLSGWMIFDARTYDSDGNTDGEYYQ 740
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
MP + R +T + + G T+VL G+ +D ++ + + IP+L +PI+G LF++ + ++
Sbjct: 741 MPIFDKRSIETDITVYDGETVVLGGVAQDKVEIVNDKIPVLGDLPIVGRLFQSKYTDSQK 800
Query: 408 TEIFIAATPFLVKP 421
+ + T LVKP
Sbjct: 801 RNLLVFLTCRLVKP 814
>gi|171316796|ref|ZP_02906007.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria MEX-5]
gi|171098054|gb|EDT42870.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria MEX-5]
Length = 598
Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats.
Identities = 47/272 (17%), Positives = 95/272 (34%), Gaps = 8/272 (2%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
M T + T +++ L++ + ++ + EV
Sbjct: 331 MAPTEERLPVIQADPGTNSVLVRDVPQRIDQYASLVSQLDVR-RQLIEIEAHVIEVDETA 389
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L+QIG G A FG S G + ++ L+
Sbjct: 390 LRQIGVNWGARSKHVGLQTGGGAPFGA---STGNTLTAVVGDSGRYLMGRINLLQLENKA 446
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-TVLSPGRI 328
R A P + + A + + + ++G + + G+ L P + GR
Sbjct: 447 RLDASPKVATLDNVEAIMDNRSRFFVRVSGHTSGQ--LYSVSTGISLRVLPMVMNENGRQ 504
Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+++ + + I ++P T + ++++AG + + G+P
Sbjct: 505 YIKLAVNIDDGQITNRTVDNIPIVNSSSIRTQAVIGKDESLLIAGYRVEGRSEGTFGVPG 564
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
LSKIP++GALFR S + + + TP ++
Sbjct: 565 LSKIPVVGALFRQSESSARKMDRIFLLTPRII 596
>gi|28899520|ref|NP_799125.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633]
gi|28807756|dbj|BAC61009.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633]
Length = 578
Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats.
Identities = 60/317 (18%), Positives = 119/317 (37%), Gaps = 36/317 (11%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + + T + ++++ L+I + QV
Sbjct: 262 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 320
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
++ I + + ++G + T + + +
Sbjct: 321 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGVG 380
Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ F V + + L AL++ + ++ P L + +
Sbjct: 381 IDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKP 440
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIG 342
A G + Y SS+GATSVT + L TP + R+ L + P V+
Sbjct: 441 AYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKVVK 499
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S
Sbjct: 500 TGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSY 559
Query: 403 FNREETEIFIAATPFLV 419
N ++E+ I TP +V
Sbjct: 560 ENVGKSELLIFVTPKVV 576
>gi|171909907|ref|ZP_02925377.1| Type II secretory pathway component, protein D [Verrucomicrobium
spinosum DSM 4136]
Length = 665
Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats.
Identities = 58/277 (20%), Positives = 96/277 (34%), Gaps = 41/277 (14%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------------SKSFAADFGGKFVSEG 242
Q+ ++V E RD K+ G S T SG + + +EG
Sbjct: 272 QIAIEVKFFETSRDPAKEFGVDWSGTFGQSGLFRQVDSVTSDPETGQQTVNTTNIAQTEG 331
Query: 243 G--------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G VL L A+ + RT++ P + +
Sbjct: 332 GYRADLSNLLSLGNLNEAKAFLAPSTAVLSAQDVNIKLRAMLKDQETRTVSYPRMVTTNN 391
Query: 283 QSASFTSGGQHL-------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
+ S + ST +S++ G V++ P + +I L +
Sbjct: 392 REVVIRSVVNQPVLGGSASTSLGTGSTTTSSISYLPIGTVINILPKRMMDDKINLNLAIT 451
Query: 336 VSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
VS + + P R VEL +G T+ + GL + Q+ ++GIP+L KIPI
Sbjct: 452 VSSIIGTEVIQGNPYPVASSRVYSAPVELNNGYTVAVGGLDEAREQEGEQGIPVLGKIPI 511
Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
LG F+ + + I TP L+ +P
Sbjct: 512 LGYAFKTKGKAKNHKNLMIFITPSLIDVRDGGLPEKP 548
>gi|205352890|ref|YP_002226691.1| outer membrane secretory protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205272671|emb|CAR37581.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|309243418|gb|ADO51994.1| SsaC [Salmonella enterica subsp. enterica serovar Gallinarum]
gi|326627962|gb|EGE34305.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 497
Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 45/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + S + + + + + + V I +V + Q+
Sbjct: 235 AADPRQNAVIVRDYASNMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ + + + +P + + + L +G +++L G + + IPLL
Sbjct: 401 DLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFRN +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490
>gi|148270748|ref|YP_001245208.1| type II and III secretion system protein [Thermotoga petrophila
RKU-1]
gi|147736292|gb|ABQ47632.1| type II and III secretion system protein [Thermotoga petrophila
RKU-1]
Length = 387
Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 50/237 (21%), Positives = 100/237 (42%), Gaps = 7/237 (2%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
++ + ++I QV + V + E+ RD ++G S G + F ++
Sbjct: 154 EEDLKKIDIPIP-QVKISVIVTEISRDYSNELGLN--SLDYSFGSGQEFNENWTATLGLV 210
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
G +V+ + L LE + A+P + SG+ AS G+ + +
Sbjct: 211 TGILNVQTDV-FGQILAKLKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLEAE 268
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + + D GV + P V+ + L + +VS + + + TT+
Sbjct: 269 GAVSRIESIDVGVSIEIQPRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLF 326
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G T+V++G +D Q G+P+L+KIP++ LF + + E++I +
Sbjct: 327 LKNGQTVVISGATIEDSAQTGSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383
>gi|269138220|ref|YP_003294920.1| Type II secretory pathway, component PulD like protein
[Edwardsiella tarda EIB202]
gi|55981981|gb|AAV69411.1| EsaC [Edwardsiella tarda]
gi|61743031|gb|AAX55251.1| EsaC [Edwardsiella tarda]
gi|267983880|gb|ACY83709.1| Type II secretory pathway, component PulD like protein
[Edwardsiella tarda EIB202]
gi|304558263|gb|ADM40927.1| EsaC [Edwardsiella tarda FL6-60]
Length = 494
Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/362 (17%), Positives = 129/362 (35%), Gaps = 36/362 (9%)
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
V S + + G + V + Q+ D+ +E++ + + ++ S+
Sbjct: 137 QVASANALQVNGVPACLSQVTTLAK---QLDEQDLNLEQNRETVAVFPLKYANASDTSYA 193
Query: 140 MVSDTVVLHGMVRTIQDSQRAVEL----SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
+ +VV+ G+V +++ + + S++ S + S+ N + I Q
Sbjct: 194 YRNQSVVVPGLVSVLREMAQGHAMPLPDSKSGTPPSNSSGLPTFSADLRQNAVLIRDRKQ 253
Query: 196 ------------------VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
+ + VTI +V + ++G S + G SF G
Sbjct: 254 NMALYRQLIQQLDKRPTLIEISVTIIDVDAGDINELGIDWSASARIGGGQVSFNNSGGLN 313
Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
S + + SF L ALE+ + + ++ P++ + A K
Sbjct: 314 ADSFSSLIA-----NSGSFMVRLSALEQQSKAKIVSRPSVVTLDNVQAVLDRSITFYTKL 368
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEV-SEPVIGVNAGDMPSYRV 353
S + G ++ TP ++ +I L + E + A +P +
Sbjct: 369 RSEKNPK--LEAITAGALMRVTPRLIRERGGNKILLILNIEDGRQGAPLSQAESLPQVQN 426
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
+ T L G ++L G ++++ Q IPLL IP++G LFR++
Sbjct: 427 AEIATQATLNLGQALLLGGFVQNENTQGVRKIPLLGDIPLIGGLFRSTDSKVHSVVRLFL 486
Query: 414 AT 415
Sbjct: 487 IK 488
>gi|207857100|ref|YP_002243751.1| outer membrane secretory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|206708903|emb|CAR33233.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
Length = 497
Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ + + + +P + + + L +G +++L G + + IPLL
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFRN +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490
>gi|167842291|ref|ZP_02468975.1| type III secretion system EscC protein [Burkholderia thailandensis
MSMB43]
Length = 508
Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 11/229 (4%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
V + V I +V L +G S + G S SF + S S
Sbjct: 280 RKPKLVEISVAIIDVNAQDLSMLGVDWSASARIGGGSVSFNSGGEPDSGSFSTVVS---- 335
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ F L ALE+ + L+ P++ + A K S+ + +
Sbjct: 336 -NTGQFMVRLSALEQNAKAQILSRPSVVTLDNMQAVLDRNITFYTKV--SAERVAKLESI 392
Query: 311 DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGG 366
G +L TP V+ G+ + + V + +P + T L G
Sbjct: 393 STGSLLRVTPRVIGDPGKQEIMLTLMVQDGRQTGALSKQEPLPQTLNSEIATHALLKEGQ 452
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
++L G ++D++ + + IPLL IP+LG LF+ N+ T
Sbjct: 453 ALLLGGFVQDELSEGERKIPLLGDIPLLGNLFKMRHKNQRHTVRLFLIK 501
>gi|302877407|ref|YP_003845971.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2]
gi|302580196|gb|ADL54207.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2]
Length = 705
Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 47/272 (17%), Positives = 94/272 (34%), Gaps = 14/272 (5%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
A+ T +K++ +++ QV ++ + +G +
Sbjct: 431 AMADVRTNTLFVKDTPSRLEEVRKLLKQIDVPVR-QVMIEARFVSAGDSFARSLGGKLGY 489
Query: 220 TG-----SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------FETVLHALERATA 268
+ + + +L F+ L+A E
Sbjct: 490 ASPANAANGGAATTGAINGVNVNLPNSLAGTGGGLLLSLFNPAATKVLTLELNASETDGI 549
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
+ +A P + AS SG + Y + + + L TP + I
Sbjct: 550 TKNIASPRVVTADKTKASIKSGVEIPYTIAGTVGSPPTTAFKTAALSLDVTPRITPDNNI 609
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ + S+ +G +PS + T V + +GGT+V+ G+ D+ +PLL
Sbjct: 610 NMTLVA--SQDTVGALYSGVPSINSKMVTTEVLIENGGTVVVGGVFTQDVADTVNKVPLL 667
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+LG +F+N + E+ I TP +++
Sbjct: 668 GDIPVLGWMFKNKVKTDAKNELLIFITPKIMQ 699
>gi|83591449|ref|YP_425201.1| type II and III secretion system protein [Rhodospirillum rubrum
ATCC 11170]
gi|83574363|gb|ABC20914.1| type II and III secretion system protein [Rhodospirillum rubrum
ATCC 11170]
Length = 547
Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 100/266 (37%), Gaps = 31/266 (11%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
QV ++ I EV + G P + + +
Sbjct: 271 QVLIEAKIVEVTLKDQYRGGIDWKVLTDGGEFLLDIPGAAGVVAPPLTDAAATLSLGTRA 330
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------- 299
L ++ ++ A+RTL+ P LT ++ Q+A +Y V
Sbjct: 331 TLGPVELSALVQFIKTFGAVRTLSSPRLTVMNNQTAVLKVAENEVYFVVDVDTVTSDGVT 390
Query: 300 SSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGVNAGD----------- 347
+T ++ + T G+V+ P GR+ L ++ +S V
Sbjct: 391 QTTYSSEINTVPIGLVMTVQPSVEPGGGRVTLGLRPTISRIADRVADPAVSLQNLSVQSL 450
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P VR+ D+ V + +G +V+ GL+++ + + +EG+P L +P++G FR+ + +
Sbjct: 451 IPVVEVRELDSVVTIDNGAVVVMGGLMQERMGRDEEGVPGLGDVPLIGRAFRHDSADTDV 510
Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDH 433
E+ + ++ S P D
Sbjct: 511 VELVVLLRATVI----GGAHSHPADR 532
>gi|329943286|ref|ZP_08292060.1| bacterial type II and III secretion system family protein
[Chlamydophila psittaci Cal10]
gi|332287864|ref|YP_004422765.1| putative general secretion pathway protein D [Chlamydophila
psittaci 6BC]
gi|313848436|emb|CBY17440.1| probable general secretion pathway protein D [Chlamydophila
psittaci RD1]
gi|325507393|gb|ADZ19031.1| putative general secretion pathway protein D [Chlamydophila
psittaci 6BC]
gi|328814833|gb|EGF84823.1| bacterial type II and III secretion system family protein
[Chlamydophila psittaci Cal10]
gi|328915126|gb|AEB55959.1| general secretion pathway protein D [Chlamydophila psittaci 6BC]
Length = 753
Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 47/238 (19%), Positives = 94/238 (39%), Gaps = 5/238 (2%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ V ++V + E + ++ G G S A + + E G
Sbjct: 461 KKMVRIEVLLFERKLSSQRKAGLNLLRLGEEVCKKSSSAISWTSSGILEFLFKGNTGASL 520
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
++ L +R A P++ ++ A + VS+ Y
Sbjct: 521 VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSADKEKAQYNRAQY 579
Query: 313 GVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
G+++ P + G+ + ++T+++ G NA + P R V +P G T++
Sbjct: 580 GIMIKMLPVINVGDEDGKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVI 639
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRD 426
+ GL ++GIP L +IP +G LF + +TE+F+ TP ++ P+ ++
Sbjct: 640 IGGLRCKHASDSQDGIPFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILDNPIEKKE 697
>gi|167551637|ref|ZP_02345391.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|168263775|ref|ZP_02685748.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|168463196|ref|ZP_02697127.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|194442462|ref|YP_002040647.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|198244927|ref|YP_002215736.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|194401125|gb|ACF61347.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|195633943|gb|EDX52295.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|197939443|gb|ACH76776.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|205323577|gb|EDZ11416.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205347635|gb|EDZ34266.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|326623484|gb|EGE29829.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Dublin str.
3246]
Length = 497
Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ + + + +P + + + L +G +++L G + + IPLL
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFRN +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490
>gi|197247911|ref|YP_002146647.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Agona str.
SL483]
gi|197211614|gb|ACH49011.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Agona str.
SL483]
Length = 497
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ + + + +P + + + L +G +++L G + + IPLL
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFRN +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490
>gi|16764744|ref|NP_460359.1| outer membrane secretin precursor [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|1498307|gb|AAC44301.1| SpiA [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|16419915|gb|AAL20318.1| secretion system apparatus protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|261246600|emb|CBG24410.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267993282|gb|ACY88167.1| outer membrane secretin precursor [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157929|emb|CBW17424.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312912379|dbj|BAJ36353.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Typhimurium
str. T000240]
gi|321224019|gb|EFX49082.1| Secretion system apparatus SsaC [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323129666|gb|ADX17096.1| outer membrane secretin precursor [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332988281|gb|AEF07264.1| outer membrane secretin precursor [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 497
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ + + + +P + + + L +G +++L G + + IPLL
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFRN +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490
>gi|161614190|ref|YP_001588155.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161363554|gb|ABX67322.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 497
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ + + + +P + + + L +G +++L G + + IPLL
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFRN +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490
>gi|56413635|ref|YP_150710.1| outer membrane secretory protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197362559|ref|YP_002142196.1| outer membrane secretory protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56127892|gb|AAV77398.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197094036|emb|CAR59532.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
Length = 497
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ + + + +P + + + L +G +++L G + + IPLL
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFRN +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490
>gi|213024547|ref|ZP_03338994.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 284
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 47/251 (18%), Positives = 93/251 (37%), Gaps = 21/251 (8%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ ++ L++A V L + I ++ + L+++G S + G +
Sbjct: 13 EMLVKALDVAKRH-VELSLWIVDLNKSDLERLGTSWS------------GSITIGDKLGV 59
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ S LD F ++ALE ++ P L A F + K +
Sbjct: 60 SLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGER 119
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKA 356
++ YG ++ P + G+I + + E + +P
Sbjct: 120 N--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLI 177
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T +P G ++++ G +D + IP+L K+P++G+LFR S N+ P
Sbjct: 178 STIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRVFMIEP 237
Query: 417 F-LVKPVAMRD 426
+V P+
Sbjct: 238 KEIVDPLTPDA 248
>gi|168233588|ref|ZP_02658646.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|168239278|ref|ZP_02664336.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|194471885|ref|ZP_03077869.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194734057|ref|YP_002114408.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|204927561|ref|ZP_03218762.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|194458249|gb|EDX47088.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194709559|gb|ACF88780.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197288005|gb|EDY27392.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|204322903|gb|EDZ08099.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|205332374|gb|EDZ19138.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
Length = 497
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ + + + +P + + + L +G +++L G + + IPLL
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFRN +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490
>gi|300693821|ref|YP_003749794.1| type III secretion protein [Ralstonia solanacearum PSI07]
gi|299075858|emb|CBJ35167.1| Type III secretion protein [Ralstonia solanacearum PSI07]
Length = 590
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 23/245 (9%)
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241
+ +I E+ L+Q+G + S +A+
Sbjct: 348 ISASIIEISETALEQLGVDWRLHNSRFDLQTGNSANTMLNNPGSLDSVATTAGAAAAIAA 407
Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
GG S + AL++ R A P + + A +
Sbjct: 408 TPAGGVLSAVIGGSSRYLMARISALQQTNQARITANPKVATLDNTEAVMDNRQNFYVPVA 467
Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
+ + GV L P V+ G + +R+ + + I G++P +
Sbjct: 468 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPVTSQSEI 525
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
DT + G ++++AG D + + +P LSKIP++GALFR + + + TP
Sbjct: 526 DTQALINEGESLLIAGYSVDQQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVTP 585
Query: 417 FLVKP 421
++ P
Sbjct: 586 RVITP 590
>gi|322615120|gb|EFY12043.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 315996572]
gi|322619963|gb|EFY16836.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-1]
gi|322622274|gb|EFY19119.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-3]
gi|322627796|gb|EFY24586.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-4]
gi|322632859|gb|EFY29603.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-1]
gi|322636650|gb|EFY33353.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-2]
gi|322641157|gb|EFY37799.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 531954]
gi|322644908|gb|EFY41441.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. NC_MB110209-0054]
gi|322650255|gb|EFY46669.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. OH_2009072675]
gi|322655829|gb|EFY52131.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. CASC_09SCPH15965]
gi|322660154|gb|EFY56393.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 19N]
gi|322665279|gb|EFY61467.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 81038-01]
gi|322669536|gb|EFY65684.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. MD_MDA09249507]
gi|322673462|gb|EFY69564.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 414877]
gi|322677390|gb|EFY73454.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 366867]
gi|322679947|gb|EFY75986.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 413180]
gi|322687419|gb|EFY83391.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 446600]
gi|323193477|gb|EFZ78684.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 609458-1]
gi|323198609|gb|EFZ83710.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 556150-1]
gi|323208655|gb|EFZ93593.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 507440-20]
gi|323211192|gb|EFZ96039.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 556152]
gi|323217632|gb|EGA02347.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB101509-0077]
gi|323218980|gb|EGA03490.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB102109-0047]
gi|323223665|gb|EGA07975.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB110209-0055]
gi|323229434|gb|EGA13557.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB111609-0052]
gi|323232657|gb|EGA16753.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 2009083312]
gi|323240305|gb|EGA24349.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 2009085258]
gi|323242706|gb|EGA26727.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 315731156]
gi|323245918|gb|EGA29906.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323252482|gb|EGA36329.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323255189|gb|EGA38968.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323260064|gb|EGA43689.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008284]
gi|323267172|gb|EGA50657.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323271505|gb|EGA54926.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 497
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ + + + +P + + + L +G +++L G + + IPLL
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFRN +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490
>gi|90410268|ref|ZP_01218284.1| general secretion pathway protein D precursor [Photobacterium
profundum 3TCK]
gi|90328509|gb|EAS44793.1| general secretion pathway protein D precursor [Photobacterium
profundum 3TCK]
Length = 406
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 50/280 (17%), Positives = 109/280 (38%), Gaps = 12/280 (4%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIA 203
VL + + Q A + + + S ++ NL+ QV + +
Sbjct: 133 VLTAYSKNTGEMQTAYSVITLPNINAMIVTGSPSQLTQIDNLIKRVDVRRKQVLIDAVVM 192
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
+ R + IG + +G K +GG+ + D+ ++ A+
Sbjct: 193 DTRLGDSESIGVSLDVLLEGAGFRLISNPVSSIKESFKGGNI----IYDKGDVSALVTAI 248
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFT 319
+ + L++P L + + S G + + ++ + + G+ L
Sbjct: 249 TQNQNTKLLSKPYLLVMDREKGSINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLSVV 308
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
P +++ + L I S A D+ R+ +T V++ G +I+L GL+ D+ +
Sbjct: 309 PHIVND-SVVLGINQTSSSVSDSDIASDI-ITNNREINTVVQVLDGQSIILGGLVSDESR 366
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ + G+PLL IP +G LFR + +++ + ++
Sbjct: 367 KSESGVPLLKDIPWIGGLFRTTSDKSVSSQMSVLIKVTVI 406
>gi|308126655|ref|ZP_05911606.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037]
gi|308108444|gb|EFO45984.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037]
Length = 582
Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/319 (18%), Positives = 119/319 (37%), Gaps = 38/319 (11%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + + T + ++++ L+I + QV
Sbjct: 264 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 322
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
++ I + + ++G + T + + +
Sbjct: 323 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGDG 382
Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ F V + + L AL++ + ++ P L +
Sbjct: 383 VGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 442
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
+ A G + Y SS+GATSVT + L TP + R+ L + P V
Sbjct: 443 KPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKV 501
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR
Sbjct: 502 VKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 561
Query: 401 SRFNREETEIFIAATPFLV 419
S N ++E+ I TP +V
Sbjct: 562 SYENVGKSELLIFVTPKVV 580
>gi|328472347|gb|EGF43217.1| fimbrial assembly protein [Vibrio parahaemolyticus 10329]
Length = 570
Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/319 (18%), Positives = 119/319 (37%), Gaps = 38/319 (11%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + + T + ++++ L+I + QV
Sbjct: 252 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 310
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
++ I + + ++G + T + + +
Sbjct: 311 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGDG 370
Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ F V + + L AL++ + ++ P L +
Sbjct: 371 VGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 430
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
+ A G + Y SS+GATSVT + L TP + R+ L + P V
Sbjct: 431 KPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKV 489
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR
Sbjct: 490 VKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 549
Query: 401 SRFNREETEIFIAATPFLV 419
S N ++E+ I TP +V
Sbjct: 550 SYENVGKSELLIFVTPKVV 568
>gi|16760517|ref|NP_456134.1| outer membrane secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141723|ref|NP_805065.1| outer membrane secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|168822263|ref|ZP_02834263.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
gi|213051564|ref|ZP_03344442.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213428550|ref|ZP_03361300.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213647233|ref|ZP_03377286.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213854968|ref|ZP_03383208.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|238913201|ref|ZP_04657038.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|25511812|pir||AB0700 probable outer membrane secretory protein spiA [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16502813|emb|CAD01971.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29137351|gb|AAO68914.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|205341330|gb|EDZ28094.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
gi|320086125|emb|CBY95899.1| Yop proteins translocation protein C Flags: Precursor [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 497
Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ + + + +P + + + L +G +++L G + + IPLL
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFRN +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490
>gi|197264837|ref|ZP_03164911.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|197243092|gb|EDY25712.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
Length = 497
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ + + + +P + + + L +G +++L G + + IPLL
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFRN +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490
>gi|161503511|ref|YP_001570623.1| hypothetical protein SARI_01587 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864858|gb|ABX21481.1| hypothetical protein SARI_01587 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 484
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 43/230 (18%), Positives = 86/230 (37%), Gaps = 10/230 (4%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
+ + V I +V + Q+G S G +F + + + D
Sbjct: 254 QMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNSGPNEGDT----NGFSTVISDT 309
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+F L+ALE+++ L++P++ ++ A K + + G
Sbjct: 310 SNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTG 367
Query: 314 VVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIV 369
+L TP +L+ +I L + + + + +P + + + L +G +++
Sbjct: 368 SLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETNPLPEVQNSEIASQATLLAGQSLL 427
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G + + + IPLL IP+LG LFRN +V
Sbjct: 428 LGGFKQGKQIRSQNKIPLLGDIPVLGHLFRNDTTQVHSVIRLFLIKASVV 477
>gi|62179985|ref|YP_216402.1| secretion system apparatus SsaC [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|168240906|ref|ZP_02665838.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL486]
gi|194448307|ref|YP_002045398.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|200390529|ref|ZP_03217140.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|224584095|ref|YP_002637893.1| outer membrane secretory protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|62127618|gb|AAX65321.1| Secretion system apparatus SsaC [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|194406611|gb|ACF66830.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|199602974|gb|EDZ01520.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|205339640|gb|EDZ26404.1| type III secretion outer membrane pore, YscC/HrcC family
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL486]
gi|224468622|gb|ACN46452.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|322714452|gb|EFZ06023.1| secretion system apparatus SsaC [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 497
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ + + + +P + + + L +G +++L G + + IPLL
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFRN +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490
>gi|269302489|gb|ACZ32589.1| type II/III secretion system protein [Chlamydophila pneumoniae
LPCoLN]
Length = 919
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 61/316 (19%), Positives = 115/316 (36%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITG---- 221
++ S + +V++LLN QV ++V I + + G Q G
Sbjct: 565 VNNSIVIIGNQGNVDRVVSLLNGLDLPPKQVYIEVLILDTSLEKSWDFGVQWVALGDEQS 624
Query: 222 ---------SSSGPSKSFAADFGGKFVSEGG--------------------DFSVKGVLD 252
+++G + A + G F + + +
Sbjct: 625 KVAYASGLLNNTGIATPTKATVPPGTPNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGN 684
Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---- 300
S +L AL++ + P + A Q ASF G Y+T ++
Sbjct: 685 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQE 744
Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
T ++ D GV L T TV + L+I+ +SE + P A T
Sbjct: 745 TGTVTQNIDYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSASGSLT-PVTDKTYAATR 803
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++
Sbjct: 804 LQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 863
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 864 SSFEEGTRVTNKEGYR 879
>gi|84785906|gb|ABC62092.1| secretion and cellular translocation protein C [Chlamydophila
psittaci]
Length = 672
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 58/316 (18%), Positives = 108/316 (34%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ S ++ KV++LLN QV ++V I E + G Q G G
Sbjct: 318 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 377
Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252
+ ++ F + + +
Sbjct: 378 KVAYASGLLSNTGLANPAKSTVPPAKPSTGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 437
Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
S +L AL++ + P + A Q ASF G ++T
Sbjct: 438 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 497
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ T ++ D GV L TV + L+I+ +SE P A T
Sbjct: 498 TGTVTQNIEYEDIGVNLVVASTVAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 556
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ + P ++
Sbjct: 557 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNTMMFIKPKVI 616
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 617 SSFEEGTKLTNKEGYR 632
>gi|330443957|ref|YP_004376943.1| type II and III secretion system protein [Chlamydophila pecorum
E58]
gi|328807067|gb|AEB41240.1| Bacterial type II and III secretion system protein [Chlamydophila
pecorum E58]
Length = 751
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 50/258 (19%), Positives = 99/258 (38%), Gaps = 9/258 (3%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ V ++V + E + ++ G G KS + +F +KG
Sbjct: 457 KKMVRIEVLLFERKLSHDRKSGLNLLRLGEEI-SKKSLTPTVSWGSGAGILEFLLKGATG 515
Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
++ L +R A P++ ++ A + VS+
Sbjct: 516 CSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVDEM-SIAVSAENDKALYNR 574
Query: 310 HDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
YG+++ P + G+ + ++T+++ G N D P R V + G
Sbjct: 575 AQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNMDDRPEVTRRNITNKVRIADGE 634
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425
++++ GL + +EGIP L +IP LG LF + + TE+F+ TP ++ P+ +
Sbjct: 635 SVIIGGLRCKHMSDSQEGIPFLGEIPGLGKLFSMNAVSDSLTEMFVFITPKILDNPMEKQ 694
Query: 426 DLSRPDDHYSVEDDAKAF 443
+ S + + F
Sbjct: 695 ERYEEALLASRPGEDEEF 712
>gi|149200051|ref|ZP_01877076.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155]
gi|149136809|gb|EDM25237.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155]
Length = 825
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/333 (16%), Positives = 110/333 (33%), Gaps = 65/333 (19%)
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
++ N + ++N LN G QV ++ + ++ + ++++GF TG
Sbjct: 490 VASVNRLVVTNTVNNNQLIQDIINNLN-TGAAQVNVEAKVVDITWNAMQELGFLWRWTGP 548
Query: 223 SSGPSKSFAADFGGKFVSEGGD-----------------------FSVKGVLDRFSFETV 259
+ + + + + + +
Sbjct: 549 RTPNHTLTGDRIFAQSNTPASGGERFDNNIRGINEVVTSQEGPVQLAADLIFGNQELQMM 608
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----------GATSVT 308
+ AL+++ L P + SG++A + T
Sbjct: 609 IRALDQSDTNEILMAPNVLTKSGETAVIRVVTSQQFVEEWEEGEFSNSTEIVPSTPTFGE 668
Query: 309 THDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGD-------------------- 347
D G VL TP V I + + E E + +
Sbjct: 669 EKDIGFVLSVTPEVDPNNTVITMEVNPEFIEFLGYDTDLNTSTELQLFDINGSPFTYQAE 728
Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
MP + VR +T V+L G T L GL+++++ + + IP +S IP +G LF+N
Sbjct: 729 FIYSMPIFEVRSIETRVKLWDGQTFTLGGLIRENVWTVDDSIPYISAIPFVGRLFQNKGE 788
Query: 404 NREETEIFIAATPFLVK----PVAMRDLS-RPD 431
E+ + + T L+ P+ + + PD
Sbjct: 789 ASEKRSLLMFITARLITESGLPLRINQVPGLPD 821
>gi|238918877|ref|YP_002932391.1| type III secretion outer membrane pore, YscC/HrcC family,
[Edwardsiella ictaluri 93-146]
gi|84663086|gb|ABC60068.1| EsaC [Edwardsiella ictaluri 93-146]
gi|238868445|gb|ACR68156.1| type III secretion outer membrane pore, YscC/HrcC family, putative
[Edwardsiella ictaluri 93-146]
Length = 494
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/335 (17%), Positives = 119/335 (35%), Gaps = 33/335 (9%)
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL--- 163
KQ+ D+ E++ +E+ ++ S+ + +VV+ G+V +++ + +
Sbjct: 161 KQLDEQDLNQEQNRETVEVFPLKYANASDTSYTYRNQSVVVPGLVSVLREMAQGHAMPLP 220
Query: 164 -SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ------------------VTLKVTIAE 204
S++ S + S+ N + I Q + + VTI +
Sbjct: 221 DSKSSTPPSNSSGLPTFSADLRQNAVLIRDRKQNMALYRQLIQRLDKRPTLIEISVTIID 280
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
V + Q+G S + G SF S S + SF L ALE
Sbjct: 281 VDAGDINQLGIDWSASARIGGGQVSFNNGGRLNSDSFSSLIS-----NSGSFMVRLSALE 335
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT--- 321
+ + + ++ P++ + A K S + G ++ TP
Sbjct: 336 QQSKAKIVSRPSVVTLDNVQAVLDRSITFYTKLSSEKNPK--LEAITSGALMRVTPRLIR 393
Query: 322 VLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
++ L + E + +P + + T L G ++L G ++++ Q
Sbjct: 394 ENGGNKVLLILNIEDGRQGAPLSQTESLPQVQNAEIATQATLNLGQALLLGGFVQNENTQ 453
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
IPLL +P++G LFR++ N
Sbjct: 454 GVRKIPLLGDLPLIGGLFRSTDRNTLSVVRLFLIK 488
>gi|15618612|ref|NP_224898.1| Yop proteins translocation protein C/general secretion pathway
protein [Chlamydophila pneumoniae CWL029]
gi|15836234|ref|NP_300758.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138]
gi|16752338|ref|NP_444596.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39]
gi|33242060|ref|NP_877001.1| outer membrane secretion protein Q [Chlamydophila pneumoniae
TW-183]
gi|4377005|gb|AAD18841.1| probable Yop proteins translocation protein C/general secretion
pathway protein [Chlamydophila pneumoniae CWL029]
gi|6672030|dbj|BAA88652.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae]
gi|7188983|gb|AAF37937.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39]
gi|8979074|dbj|BAA98909.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138]
gi|33236570|gb|AAP98658.1| outer membrane secretion protein Q [Chlamydophila pneumoniae
TW-183]
Length = 919
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 61/316 (19%), Positives = 114/316 (36%), Gaps = 49/316 (15%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITG---- 221
++ S + +V+ LLN QV ++V I + + G Q G
Sbjct: 565 VNNSIVIIGNQGNVDRVIGLLNGLDLPPKQVYIEVLILDTSLEKSWDFGVQWVALGDEQS 624
Query: 222 ---------SSSGPSKSFAADFGGKFVSEGG--------------------DFSVKGVLD 252
+++G + A + G F + + +
Sbjct: 625 KVAYASGLLNNTGIATPTKATVPPGTPNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGN 684
Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---- 300
S +L AL++ + P + A Q ASF G Y+T ++
Sbjct: 685 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQE 744
Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
T ++ D GV L T TV + L+I+ +SE + P A T
Sbjct: 745 TGTVTQNIDYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSASGSLT-PVTDKTYAATR 803
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++
Sbjct: 804 LQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 863
Query: 420 KPVAMRDLSRPDDHYS 435
+ Y
Sbjct: 864 SSFEEGTRVTNKEGYR 879
>gi|86605695|ref|YP_474458.1| type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab]
gi|86554237|gb|ABC99195.1| putative type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab]
Length = 723
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 51/256 (19%), Positives = 89/256 (34%), Gaps = 28/256 (10%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--------KFVSEGG 243
QV + E+ D +G + FGG V G
Sbjct: 466 RSRQVLISARFIEINLDNNSSLGVALGSASGNFALGSGDNTVFGGTPLDQPAGSSVPNVG 525
Query: 244 DFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
F G F + A + + LA+P + + A+ G +
Sbjct: 526 SFPAAGTGGSLVFNTLNRLQQSLAARIDAAIASGTAKILADPKVVVANNTGAAIVVGQEV 585
Query: 294 LYKTVSSSTGATSVTTH-----DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGD 347
+ + AT ++T + GV L + G I L + ++S + D
Sbjct: 586 ITNRRLQTDPATGISTVVFEKGNAGVNLLIQNVRIDDNGYITLNLLPQISSIGSQITLSD 645
Query: 348 MPSY---RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
R T L T+ L GL++++ + + +PLLS+IP+LG+LFR
Sbjct: 646 GTVISLLNQRSVGTLQTRLKDRETLFLGGLIQEEDRVSVDKVPLLSEIPLLGSLFRRQNT 705
Query: 404 NREETEIFIAATPFLV 419
+E+ + TP ++
Sbjct: 706 TNTRSEVVVLITPVIL 721
>gi|238759396|ref|ZP_04620561.1| Possible type III secretion system protein [Yersinia aldovae ATCC
35236]
gi|238702423|gb|EEP94975.1| Possible type III secretion system protein [Yersinia aldovae ATCC
35236]
Length = 557
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/262 (15%), Positives = 85/262 (32%), Gaps = 22/262 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L + I +V + + +G + F+ + D
Sbjct: 302 RSQVELSLWIIDVTQSKVDDLGVRWEA--------------GNIGVAGGSVTFNRSTLSD 347
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+F + A+ + R ++ P + A F + + ++ Y
Sbjct: 348 SKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARV--EGDRVATLEQVTY 405
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGT 367
G ++ P + + + + E G +P +T + +
Sbjct: 406 GTMISVLPRLSGGSGVEMEVNIEDGGLNRDNTGKVADIGGLPEVNRTNINTVARIGRDKS 465
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
+++ G +D +++ + IPLLS IP+LG LF+ N+++ P L+ D
Sbjct: 466 LLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLLDENEAWDG 525
Query: 428 SRPDDHYSVEDDAKAFFFNRVN 449
+ D+ V
Sbjct: 526 RQFSDN-ERLTRHDGQLRGTVE 546
>gi|167587171|ref|ZP_02379559.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia ubonensis Bu]
Length = 341
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/256 (17%), Positives = 93/256 (36%), Gaps = 30/256 (11%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ ++ + E+ LKQ+G S + + + + +
Sbjct: 89 PRLIEIEARMIEIDEGALKQLGIDWRAHNSHFDLQTGTGLTSQNSYANGSLNPTFGSISL 148
Query: 253 RFS------------------------FETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+ ++ALE A RT A P +T + A
Sbjct: 149 SGNDSVSVPASPLGLSLTAVLGDAGRYLLARINALESANQARTDASPKVTTLDNVEAVMD 208
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA 345
+ Q + ++ + + GV L P V+ G +I L ++ V +
Sbjct: 209 NKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVEEGGRTQIKLDVRI-VDGELSRQTV 265
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
++P + +T + G +++AG D + G+P+LSK+P++G LFR++
Sbjct: 266 DNIPVIVSTEINTQAFIEQGQALLIAGYKMDARSSTQSGVPVLSKLPLIGGLFRSTDKED 325
Query: 406 EETEIFIAATPFLVKP 421
+E TP +++P
Sbjct: 326 SHSERLFLVTPRVIEP 341
>gi|323978511|gb|EGB73593.1| YscC/HrcC family protein type III secretion outer membrane pore
[Escherichia coli TW10509]
Length = 567
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 67/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G A V+ + + + + +I+ L+ D + + +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258
Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
+ T ++ ++ + + +K++ L+I + L + I ++
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ L+Q+G S G + + LD F + AL +
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P + A F + K V T + YG ++ P S
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFASRN 424
Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L + E N D+P T +P G ++++ G +D
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520
>gi|320662066|gb|EFX29467.1| type III secretion system outer membrane pore InvG [Escherichia
coli O55:H7 str. USDA 5905]
Length = 567
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G A V+ + + + + +I+ L+ D + + +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258
Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
+ T ++ ++ + + +K++ L+I + L + I ++
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ L+Q+G S G + + LD F + AL +
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P + A F + K V T + YG ++ P +
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424
Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L + E N D+P T +P G ++++ G +D
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520
>gi|269964448|ref|ZP_06178689.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B]
gi|269830786|gb|EEZ85004.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B]
Length = 581
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/318 (18%), Positives = 118/318 (37%), Gaps = 37/318 (11%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + + T ++++ L+I + QV
Sbjct: 264 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 322
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
++ I + + ++G + T + + +
Sbjct: 323 QIEARIVTINEGNMDELGIRWGFTSINGSNTVGGSIENNLATIGLYNGEGGDDGGDGDGV 382
Query: 232 --------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ F V + + L AL++ + ++ P L + +
Sbjct: 383 GIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKK 442
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VI 341
A G + Y SS+GAT+VT + L TP + R+ L + P V+
Sbjct: 443 PAYIEQGTEIPYLES-SSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVV 501
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S
Sbjct: 502 KTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRS 561
Query: 402 RFNREETEIFIAATPFLV 419
N ++E+ I TP +V
Sbjct: 562 YENVGKSELLIFVTPKVV 579
>gi|323202935|gb|EFZ87970.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 609460]
Length = 429
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 167 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 218
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 219 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 274
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 275 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 332
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ + + + +P + + + L +G +++L G + + IPLL
Sbjct: 333 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 392
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
IP++G LFRN +V
Sbjct: 393 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 422
>gi|163803103|ref|ZP_02196987.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4]
gi|159173095|gb|EDP57927.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4]
Length = 559
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 34/269 (12%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFV- 239
+++ L+I + QV ++ I + + ++G + ++ + +G S ++ +
Sbjct: 291 EIIQSLDIPVK-QVQIEARIVMINEGSMDELGVRWGLSSADAGYRLGGSIESNLATIGLY 349
Query: 240 ---------------------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
+ F V + + L AL++ + +
Sbjct: 350 DGGDGDDSSSVDIDDLLNVNLAVTRPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIV 409
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ P L + + A G + Y SS+GATSV + L TP + R+ L +
Sbjct: 410 SSPRLITTNKKPAYIEQGTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDL 468
Query: 333 QTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
P V+ G+ + ++ T V + +G T+VL G+ + I + +PLL
Sbjct: 469 SVTQDRPGQVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSITNSVDKVPLLGD 528
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
+P+LGALFR + N ++E+ I TP +V
Sbjct: 529 LPLLGALFRRTYENVGKSELLIFVTPKVV 557
>gi|90412668|ref|ZP_01220670.1| putative type II secretory pathway, component EpsD [Photobacterium
profundum 3TCK]
gi|90326476|gb|EAS42888.1| putative type II secretory pathway, component EpsD [Photobacterium
profundum 3TCK]
Length = 406
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 50/280 (17%), Positives = 109/280 (38%), Gaps = 12/280 (4%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIA 203
VL + + Q A + S + S ++ NL+ QV + +
Sbjct: 133 VLTAYSKNTGEMQTAYSVITLPNINSMIVTGSPSQLTQIDNLIKRVDVRRKQVLIDAVVM 192
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
+ R + IG + +G K +GG+ + D+ ++ A+
Sbjct: 193 DTRLGDSESIGVSLDVLLEGAGFRLISNPVASIKESFKGGNI----IYDKGDVSALVTAI 248
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFT 319
+ + L++P L + + + G + + ++ + + G+ L
Sbjct: 249 TQNQNTKLLSKPYLLVMDREKGAINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLSVV 308
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
P +++ + L I S A D+ R+ +T V++ G +I+L GL+ D+ +
Sbjct: 309 PHIVND-SVVLAINQTSSSVSDSDIASDI-ITNNREINTVVQVLDGQSIILGGLVSDESR 366
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ + G+PLL IP +G LFR + +++ + ++
Sbjct: 367 KSESGVPLLKDIPWIGGLFRTTSDKSVSSQMSVLIKVTVI 406
>gi|323966662|gb|EGB62094.1| YscC/HrcC family protein type III secretion outer membrane pore
[Escherichia coli M863]
Length = 567
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 67/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G A V+ + + + + +I+ L+ D + + +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258
Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
+ T ++ ++ + + +K++ L+I + L + I ++
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ L+Q+G S G + + LD F + AL +
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P + A F + K V T + YG ++ P S
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFASRN 424
Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L + E N D+P T +P G ++++ G +D
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520
>gi|218706369|ref|YP_002413888.1| protein invG [Escherichia coli UMN026]
gi|293406360|ref|ZP_06650286.1| invG [Escherichia coli FVEC1412]
gi|293412219|ref|ZP_06654942.1| YscC/HrcC family type III secretion outer membrane pore
[Escherichia coli B354]
gi|298382096|ref|ZP_06991693.1| type III secretion protein SctC [Escherichia coli FVEC1302]
gi|300896248|ref|ZP_07114795.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli MS 198-1]
gi|331674348|ref|ZP_08375108.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli TA280]
gi|62085071|gb|AAX62936.1| putative type III secretion apparatus protein [Escherichia coli]
gi|218433466|emb|CAR14368.1| Protein invG precursor [Escherichia coli UMN026]
gi|284922811|emb|CBG35899.1| type III secretion system protein [Escherichia coli 042]
gi|291426366|gb|EFE99398.1| invG [Escherichia coli FVEC1412]
gi|291468990|gb|EFF11481.1| YscC/HrcC family type III secretion outer membrane pore
[Escherichia coli B354]
gi|298277236|gb|EFI18752.1| type III secretion protein SctC [Escherichia coli FVEC1302]
gi|300359869|gb|EFJ75739.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli MS 198-1]
gi|331068442|gb|EGI39837.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli TA280]
Length = 567
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 67/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G A V+ + + + + +I+ L+ D + + +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258
Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
+ T ++ ++ + + +K++ L+I + L + I ++
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ L+Q+G S G + + LD F + AL +
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P + A F + K V T + YG ++ P S
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFASRN 424
Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L + E N D+P T +P G ++++ G +D
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520
>gi|291284183|ref|YP_003501001.1| putative type III secretion apparatus protein [Escherichia coli
O55:H7 str. CB9615]
gi|290764056|gb|ADD58017.1| Putative type III secretion apparatus protein [Escherichia coli
O55:H7 str. CB9615]
Length = 567
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G A V+ + + + + +I+ L+ D + + +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258
Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
+ T ++ ++ + + +K++ L+I + L + I ++
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ L+Q+G S G + + LD F + AL +
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P + A F + K V T + YG ++ P +
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424
Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L + E N D+P T +P G ++++ G +D
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520
>gi|167828524|ref|ZP_02459995.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei 9]
gi|226199138|ref|ZP_03794700.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei Pakistan 9]
gi|225928913|gb|EEH24938.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei Pakistan 9]
Length = 588
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 27/262 (10%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
++ L+I + ++ I E+ D+L++IG S
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385
Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
+ + A + G + + AL+ + ++ A P + +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
A + + K ++ + + GV L P ++ G +++ V++
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503
Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
G ++P + +T + G ++++AG D G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563
Query: 399 RNSRFNREETEIFIAATPFLVK 420
R ++ E +P ++
Sbjct: 564 RYHSDSQNHMERVFLLSPRIID 585
>gi|320107862|ref|YP_004183452.1| type II and III secretion system protein [Terriglobus saanensis
SP1PR4]
gi|319926383|gb|ADV83458.1| type II and III secretion system protein [Terriglobus saanensis
SP1PR4]
Length = 810
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/402 (17%), Positives = 128/402 (31%), Gaps = 50/402 (12%)
Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS-PRTMYLFGKNVGQ-----ANVIL 101
+ IS +I + + + V D+ S + + GK G +
Sbjct: 205 QGISKLAGLNVIFDPDYNSRRISV------DLSNVSLTNALRIVGKLAGTFWSPLTENTI 258
Query: 102 IGHDGKQMLNLD-------------ILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVL 147
+ + D + + D + LR + + + + + +V+
Sbjct: 259 FVAQNNRAKHTDNDSLAVETFYLTNMSQQNDANEVVTALRNLLDPSTKVFLLASQNAIVI 318
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
+ ++ ++ + + + S+ + L I
Sbjct: 319 RATPAELVLVEKLIDDFDRIRPEVVVDVAVLEVSRDLERNLGITLP-------------- 364
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ Q S SSS S S + ++AL +
Sbjct: 365 -TSFSLSAQASNANSSSSSSSSTTSSSTSGLTLNTLANLNGTNFAVTLSSASVNALLSDS 423
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSSTGATSVTTHDYGVVLHFTP 320
R L P + A GQ A+ G + S++T T T D GV + TP
Sbjct: 424 DTRVLQNPRVRASDGQQATLKIGSKIPVATGSTTSTLTSTATATTQFTYVDVGVNIDMTP 483
Query: 321 TVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
TV G++ L+++ EVS + P R ++L G +LAGLL+
Sbjct: 484 TVHLDGQVSLKMKIEVSSQTGTTTISGVSEPIISQRVVQQVIQLKDGEPSILAGLLQQSD 543
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G P L +IP L F + + EI P +V+
Sbjct: 544 TKSVSGTPGLGEIPFLKYFFSSQDKKQSSDEIVFLLIPHIVR 585
>gi|15803397|ref|NP_289430.1| type III secretion apparatus protein [Escherichia coli O157:H7
EDL933]
gi|15832987|ref|NP_311760.1| EivG [Escherichia coli O157:H7 str. Sakai]
gi|168747661|ref|ZP_02772683.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4113]
gi|168753799|ref|ZP_02778806.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4401]
gi|168759989|ref|ZP_02784996.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4501]
gi|168766854|ref|ZP_02791861.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4486]
gi|168775738|ref|ZP_02800745.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4196]
gi|168778875|ref|ZP_02803882.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4076]
gi|168785707|ref|ZP_02810714.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC869]
gi|168799994|ref|ZP_02825001.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC508]
gi|195936479|ref|ZP_03081861.1| EivG [Escherichia coli O157:H7 str. EC4024]
gi|208807740|ref|ZP_03250077.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4206]
gi|208812874|ref|ZP_03254203.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4045]
gi|208821461|ref|ZP_03261781.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4042]
gi|209395847|ref|YP_002272337.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4115]
gi|217327396|ref|ZP_03443479.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. TW14588]
gi|254794814|ref|YP_003079651.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
TW14359]
gi|261226174|ref|ZP_05940455.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256572|ref|ZP_05949105.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
FRIK966]
gi|12517375|gb|AAG57989.1|AE005515_11 type III secretion apparatus protein [Escherichia coli O157:H7 str.
EDL933]
gi|13363205|dbj|BAB37156.1| type III secretion protein EivG [Escherichia coli O157:H7 str.
Sakai]
gi|187768795|gb|EDU32639.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4196]
gi|188017811|gb|EDU55933.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4113]
gi|189003611|gb|EDU72597.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4076]
gi|189358709|gb|EDU77128.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4401]
gi|189363622|gb|EDU82041.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4486]
gi|189369391|gb|EDU87807.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4501]
gi|189373912|gb|EDU92328.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC869]
gi|189377689|gb|EDU96105.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC508]
gi|208727541|gb|EDZ77142.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4206]
gi|208734151|gb|EDZ82838.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4045]
gi|208741584|gb|EDZ89266.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4042]
gi|209157247|gb|ACI34680.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. EC4115]
gi|217319763|gb|EEC28188.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli O157:H7 str. TW14588]
gi|254594214|gb|ACT73575.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
TW14359]
gi|320640504|gb|EFX10043.1| type III secretion system outer membrane pore InvG [Escherichia
coli O157:H7 str. G5101]
gi|320645751|gb|EFX14736.1| type III secretion system outer membrane pore InvG [Escherichia
coli O157:H- str. 493-89]
gi|320651051|gb|EFX19491.1| type III secretion system outer membrane pore InvG [Escherichia
coli O157:H- str. H 2687]
Length = 567
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G A V+ + + + + +I+ L+ D + + +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258
Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
+ T ++ ++ + + +K++ L+I + L + I ++
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ L+Q+G S G + + LD F + AL +
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P + A F + K V T + YG ++ P +
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424
Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L + E N D+P T +P G ++++ G +D
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520
>gi|293416115|ref|ZP_06658755.1| YscC/HrcC family type III secretion outer membrane pore
[Escherichia coli B185]
gi|291432304|gb|EFF05286.1| YscC/HrcC family type III secretion outer membrane pore
[Escherichia coli B185]
Length = 567
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G A V+ + + + + +I+ L+ D + + +
Sbjct: 200 IIIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258
Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
+ T ++ ++ + + +K++ L+I + L + I ++
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ L+Q+G S G + + LD F + AL +
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P + A F + K V T + YG ++ P +
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424
Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L + E N D+P T +P G ++++ G +D
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520
>gi|213024121|ref|ZP_03338568.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 148
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQT 334
+ A Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I
Sbjct: 1 MLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQ 60
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
V V+ G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP L
Sbjct: 61 NVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWL 120
Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
G LFR+ E E+ + TP LV
Sbjct: 121 GQLFRHDGKEDERRELVVFITPRLV 145
>gi|11991134|gb|AAG42220.1| unknown [Shewanella putrefaciens 200]
Length = 258
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 7/172 (4%)
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVT 308
F ++ A+ T LA P +T + Q ASF G + + ++S +V
Sbjct: 8 GDFGALIQAVSSDTNSNVLATPXITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVE 67
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
+ GV L P + + L I+ EVS S+ R+ TTV SG +
Sbjct: 68 RKEVGVKLKVVPQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIV 125
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
VL GL+ + +Q+ + + L IP+LG L + + + I P +++
Sbjct: 126 VLGGLINEXVQESVQKVLSLGDIPVLGHLSNLPPVXKTKKNLMIFIKPTIIR 177
>gi|225165932|ref|ZP_03727695.1| type II and III secretion system protein [Opitutaceae bacterium
TAV2]
gi|224799824|gb|EEG18290.1| type II and III secretion system protein [Opitutaceae bacterium
TAV2]
Length = 809
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 49/264 (18%), Positives = 92/264 (34%), Gaps = 14/264 (5%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
QV ++V IAEV G +G FAA G ++ + +
Sbjct: 440 QVRIEVVIAEVSLSDEATSGIDTLGLRIENGVLTGFAASGPGGKIAGIDNGTFFQTAKEN 499
Query: 255 SFETVLHALER--ATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSV 307
+ V+ L+ PT+ Q A G + T S + ++ +
Sbjct: 500 ALAGVISLSTTPRKNNTNILSVPTIVTSHNQEAEVFIGEKRPIITGTTTTSDSLSTSSQI 559
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSG 365
T G+ L TP + G + ++++ +V + + ++ + P R A + + SG
Sbjct: 560 TQQQIGITLTVTPLIGPNGSVQMQLEQKVEDISGFVTIDGNEQPITTDRNAKSFLSARSG 619
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+VL G+ + L IP +G LF + TEI P ++ +
Sbjct: 620 DIVVLGGMQRTKKGNTTSR---LGPIPWIGDLFGKRSKTDQRTEILFFIRPTVLTNTQLD 676
Query: 426 DLSR--PDDHYSVEDDAKAFFFNR 447
++ D + + R
Sbjct: 677 NVEAYQQVDRAPHAAEIRKVLDTR 700
>gi|269961466|ref|ZP_06175830.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3]
gi|269833843|gb|EEZ87938.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3]
Length = 563
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 63/319 (19%), Positives = 119/319 (37%), Gaps = 38/319 (11%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + + T ++++ L+I + QV
Sbjct: 245 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 303
Query: 197 TLKVTIAEVRRDILKQIGFQHSITG---------------------------------SS 223
++ I + + ++G + T SS
Sbjct: 304 QIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGLYDGGGDGEGDDGGSS 363
Query: 224 SGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G + + F V + + L AL++ + ++ P L +
Sbjct: 364 VGIDDFLNVNLAATSPNATSLAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 423
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
+ A G + Y SS+GATSVT + L TP + R+ L + P V
Sbjct: 424 KPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQV 482
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR
Sbjct: 483 VKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 542
Query: 401 SRFNREETEIFIAATPFLV 419
S N ++E+ I TP +V
Sbjct: 543 SYENVGKSELLIFVTPKVV 561
>gi|331654358|ref|ZP_08355358.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli M718]
gi|331047740|gb|EGI19817.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli M718]
Length = 567
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G A V+ + + + + +I+ L+ D + + +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258
Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
+ T ++ ++ + + +K++ L+I + L + I ++
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ L+Q+G S G + + LD F + AL +
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P + A F + K V T + YG ++ P +
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424
Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L + E N D+P T +P G ++++ G +D
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520
>gi|123443735|ref|YP_001007706.1| type III secretion system protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090696|emb|CAL13572.1| possible type III secretion system protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 563
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 81/233 (34%), Gaps = 21/233 (9%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L + I +V + + +G + G F+ + D
Sbjct: 308 RSQVELSLWIIDVTQSKVDDLGVRWEA--------------GGIGVAGGSVTFNRSTLSD 353
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+F + A+ + R ++ P + A F + + S+ Y
Sbjct: 354 SKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARV--EGERVASLQQVTY 411
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGT 367
G ++ P + + + + E + +P +T + +
Sbjct: 412 GTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINTVARIGRDKS 471
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+++ G +D +++ + IPLLS IP+LG LF+ N+++ P L+
Sbjct: 472 LLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLLD 524
>gi|301027449|ref|ZP_07190786.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli MS 69-1]
gi|300394957|gb|EFJ78495.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli MS 69-1]
Length = 567
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G A V+ + + + + +I+ L+ D + + +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258
Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
+ T ++ ++ + + +K++ L+I + L + I ++
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ L+Q+G S G + + LD F + AL +
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P + A F + K V T + YG ++ P +
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424
Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L + E N D+P T +P G ++++ G +D
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520
>gi|91227284|ref|ZP_01261709.1| fimbrial assembly protein [Vibrio alginolyticus 12G01]
gi|91188678|gb|EAS74967.1| fimbrial assembly protein [Vibrio alginolyticus 12G01]
Length = 560
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 59/318 (18%), Positives = 118/318 (37%), Gaps = 37/318 (11%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + + T ++++ L+I + QV
Sbjct: 243 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 301
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
++ I + + ++G + T + + +
Sbjct: 302 QIEARIVTINEGNMDELGIRWGFTSINGSNTVGGSIENNLATIGLYNGEGGDDGGDGDGV 361
Query: 232 --------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ F V + + L AL++ + ++ P L + +
Sbjct: 362 GIDDFLNVNLAATSPNATSLAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKK 421
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VI 341
A G + Y SS+GAT+VT + L TP + R+ L + P V+
Sbjct: 422 PAYIEQGTEIPYLES-SSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVV 480
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S
Sbjct: 481 KTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRS 540
Query: 402 RFNREETEIFIAATPFLV 419
N ++E+ I TP +V
Sbjct: 541 YENVGKSELLIFVTPKVV 558
>gi|307546346|ref|YP_003898825.1| type IV pilus assembly protein PilQ [Halomonas elongata DSM 2581]
gi|307218370|emb|CBV43640.1| K02666 type IV pilus assembly protein PilQ [Halomonas elongata DSM
2581]
Length = 445
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 57/286 (19%), Positives = 112/286 (39%), Gaps = 31/286 (10%)
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
+ R + T ++ ++++ L++A QV ++ I R + +++G
Sbjct: 164 ERGRVAVDARTNTLLVQDTAERVAAIRRMLERLDVAVR-QVRIEARIVIARDSVARELGV 222
Query: 216 QHSITGSSSGPSKSFAADFG---------------------GKFVSEGGDFSVKGVLDRF 254
G S + + G S F +
Sbjct: 223 SW-------GLSANEGSTPSGLNAAGASSGVAETGGLAVDLGSARSPATTFGFGYLSGDV 275
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
+ L ALE R +++P + + ++A G + Y+ +SS GAT+V + +
Sbjct: 276 LLDLELRALESEGKSRIISQPRVITANQRTALIKQGTEIPYQEATSS-GATNVEFKEAVL 334
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
L TP + RI + + ++ V G P+ + T V + G T+VL G+L
Sbjct: 335 SLEVTPQITPDDRIIMELVIN-NDTVAQETFGGAPAIDTNQIATQVLVDDGDTVVLGGIL 393
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + PLL +P+LG LFR + + ++ E+ + TP ++
Sbjct: 394 TTEQVRQLFKTPLLGDLPLLGHLFRYTENSSDQVELLVFITPRILD 439
>gi|300697476|ref|YP_003748137.1| type III secretion protein [Ralstonia solanacearum CFBP2957]
gi|299074200|emb|CBJ53745.1| Type III secretion protein [Ralstonia solanacearum CFBP2957]
Length = 589
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 85/245 (34%), Gaps = 23/245 (9%)
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241
+ +I ++ L+Q+G + S A+
Sbjct: 347 ISASIIDITETALEQLGVDWRLHNSRFDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 406
Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
GG S + AL++ R A P + + A +
Sbjct: 407 TPAGGVLSAVIGGGSRYLMARISALQQTNQARITASPKVATLDNTEAVMDNRQNFYVPVA 466
Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
+ + GV L P V+ G + +R+ + + I G++P +
Sbjct: 467 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPVTSQSEI 524
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
DT + G ++++AG D + + +P LSKIP++GALFR + + + TP
Sbjct: 525 DTQALINEGESLLIAGYSVDQQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVTP 584
Query: 417 FLVKP 421
++ P
Sbjct: 585 RVITP 589
>gi|327251623|gb|EGE63309.1| hypothetical protein ECSTEC7V_3473 [Escherichia coli STEC_7v]
Length = 505
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 67/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 93 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 137
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G A V+ + + + + +I+ L+ D + + +
Sbjct: 138 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 196
Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
+ T ++ ++ + + +K++ L+I + L + I ++
Sbjct: 197 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 255
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ L+Q+G S G + + LD F + AL +
Sbjct: 256 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 304
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P + A F + K V T + YG ++ P S
Sbjct: 305 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFASRN 362
Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L + E N D+P T +P G ++++ G +D
Sbjct: 363 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 422
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 423 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 458
>gi|254229802|ref|ZP_04923209.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25]
gi|262393099|ref|YP_003284953.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25]
gi|151937701|gb|EDN56552.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25]
gi|262336693|gb|ACY50488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25]
Length = 582
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 59/319 (18%), Positives = 118/319 (36%), Gaps = 38/319 (11%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + + T ++++ L+I + QV
Sbjct: 264 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 322
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
++ I + + ++G + T + + +
Sbjct: 323 QIEARIVTINEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYNGGGEGEDGGDGDG 382
Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ F V + + L AL++ + ++ P L +
Sbjct: 383 VGIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 442
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
+ A G + Y SS+GAT+VT + L TP + R+ L + P V
Sbjct: 443 KPAYIEQGTEIPYLES-SSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQV 501
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR
Sbjct: 502 VKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 561
Query: 401 SRFNREETEIFIAATPFLV 419
S N ++E+ I TP +V
Sbjct: 562 SYENVGKSELLIFVTPKVV 580
>gi|167567127|ref|ZP_02360043.1| type III secretion system EscC protein [Burkholderia oklahomensis
EO147]
Length = 482
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 11/229 (4%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
V + V I ++ + L +G S + G S SF + S +
Sbjct: 254 RKPKLVEISVAIIDINAEDLGALGVDWSASARIGGGSVSFNSGGQPDAGSFSTVIA---- 309
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ SF L AL++ + R L+ P++ + A K S+ + +
Sbjct: 310 -NTGSFMVQLSALQQNSKARILSRPSIVTLDNMQAVLDRNITFYTKV--SAERVAKLESI 366
Query: 311 DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGG 366
G +L TP ++ GR + + V + +P + T L G
Sbjct: 367 STGSLLRVTPRIIGDAGRQEVMLTLVVQDGRQTSPLSQQEPLPQTLSSEIATHSLLKEGE 426
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
++L G ++D++ + + IPLL IP LG LF+ +R ++ T
Sbjct: 427 ALLLGGFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLIK 475
>gi|320667142|gb|EFX34105.1| type III secretion system outer membrane pore InvG [Escherichia
coli O157:H7 str. LSU-61]
Length = 505
Score = 134 bits (336), Expect = 5e-29, Method: Composition-based stats.
Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 93 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 137
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G A V+ + + + + +I+ L+ D + + +
Sbjct: 138 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 196
Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
+ T ++ ++ + + +K++ L+I + L + I ++
Sbjct: 197 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 255
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ L+Q+G S G + + LD F + AL +
Sbjct: 256 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 304
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P + A F + K V T + YG ++ P +
Sbjct: 305 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 362
Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L + E N D+P T +P G ++++ G +D
Sbjct: 363 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 422
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 423 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 458
>gi|187919918|ref|YP_001888949.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia phytofirmans PsJN]
gi|187718356|gb|ACD19579.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia phytofirmans PsJN]
Length = 637
Score = 134 bits (336), Expect = 5e-29, Method: Composition-based stats.
Identities = 69/435 (15%), Positives = 136/435 (31%), Gaps = 32/435 (7%)
Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ--VPVDVQDVL 70
+ L S + ++LP AV++ + + + V V V
Sbjct: 141 AGLLSSLGLADSRLPVRYSDTTAVVSGPSGFVDAVSSAVAEAQRQTTITPSVDETVIRVF 200
Query: 71 VSDPTKA-DVVVHSPRTMYLFGKNVGQANVI----------LIGHDGKQMLNLDILIERD 119
+A D+ S + G A+++ + + ER
Sbjct: 201 PLQYAQAQDITYTSGNQRQVV---PGVASLLRKLMADVPVSVPDRENATRSRNQARAERG 257
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+LR + + ++ E D ++ V + + + S S
Sbjct: 258 GPPPLPSLR-GLGLAGLQQEPELDPLLPVAEVMRPAAAPIQRNIVADARTNSVVIYDVPS 316
Query: 180 SSKKVMNLLNIAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
+ + + Q V + + ++ D +G +
Sbjct: 317 MMPSYARTIAMLDKQQDLVEITAVVIDITSDAASDLGIHWGGATRGGAGGYAVMNSSPTV 376
Query: 238 FVS------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
S G + + +H LE++ R L+ P + ++ A +S
Sbjct: 377 LASSLIPALAGLNLATMIGSSANYLFAKIHLLEQSGKARILSRPQVLTLNNSEAILSSRN 436
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG----RIGLRIQTEVSEPVIGVNAGD 347
+ + D G+ L TPTV S I L +Q + ++
Sbjct: 437 SLYVRVA--GNQDVDLYNVDTGLTLKVTPTVESGSDSARNILLSVQIDDGAFDSSLSVDG 494
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P T + G +++L G + Q + +L +P +GALFR+++ E
Sbjct: 495 IPKVNNHSIVTQAVVADGESLLLGGYEYERSQTASSQVHVLGHLPYVGALFRDTQTQVER 554
Query: 408 TEIFIAATPFLVKPV 422
E I TP VKP+
Sbjct: 555 LERLILITPR-VKPM 568
>gi|167574392|ref|ZP_02367266.1| type III secretion system EscC protein [Burkholderia oklahomensis
C6786]
Length = 487
Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats.
Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 11/229 (4%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
V + V I ++ + L +G S + G S SF + S +
Sbjct: 259 RKPKLVEISVAIIDINAEDLGALGVDWSASARIGGGSVSFNSGGQPDAGSFSTVIA---- 314
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
+ SF L AL++ + R L+ P++ + A K S+ + +
Sbjct: 315 -NTGSFMVQLSALQQNSKARILSRPSIVTLDNMQAVLDRNITFYTKV--SAERVAKLESI 371
Query: 311 DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGG 366
G +L TP ++ GR + + V + +P + T L G
Sbjct: 372 STGSLLRVTPRIIGDAGRQEVMLTLVVQDGRQTSPLSQQEPLPQTLSSEIATHSLLKEGE 431
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
++L G ++D++ + + IPLL IP LG LF+ +R ++ T
Sbjct: 432 ALLLGGFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLIK 480
>gi|299069241|emb|CBJ40501.1| Type III secretion protein [Ralstonia solanacearum CMR15]
Length = 590
Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 23/245 (9%)
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241
+ +I ++ + L+Q+G + S +
Sbjct: 348 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 407
Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
GG S + AL++ R A P + + A +
Sbjct: 408 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 467
Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
+ + GV L P V+ G + +R+ + + I G++P +
Sbjct: 468 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPITSQSEI 525
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
DT + G ++++AG + + + +P LSKIP++GALFR + + + TP
Sbjct: 526 DTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTP 585
Query: 417 FLVKP 421
++ P
Sbjct: 586 RVITP 590
>gi|186976189|gb|ACD01071.1| EivG [Escherichia coli O157:H7 str. EC10]
Length = 567
Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats.
Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G A V+ + + + + +I+ L+ D + + +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258
Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
+ T ++ ++ + + +K++ L+I + L + I ++
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ L+Q+G S G + + LD F + AL +
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+A P + A F + K V T + YG ++ P +
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424
Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L + E N D+P T +P G ++++ G +D
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTFISTIARVPQGKSLLIGGYTRDTNTYESRK 484
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520
>gi|3228547|gb|AAC34756.1| HrcC [Pseudomonas syringae pv. tomato]
Length = 700
Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 15/242 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+K++ L++ + + + I ++ + L ++ + AA G + +
Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDPNELAELSSRLEFQ--------CPAASEVGANLFD 357
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
GG S + + F LHALE + +A P++ + Q A S
Sbjct: 358 GGTSSTLFLQNASKFSAELHALEGNGSASVIANPSILTLENQPAVIDLSRTEYLTPT--S 415
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
A + G L P L ++ + + E + + PS R T
Sbjct: 416 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 475
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
+ G++V+ G + IPLL IP +G LF++ + E TP
Sbjct: 476 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 535
Query: 418 LV 419
L+
Sbjct: 536 LI 537
>gi|156972409|ref|YP_001443316.1| type IV pilus secretin PilQ [Vibrio harveyi ATCC BAA-1116]
gi|156524003|gb|ABU69089.1| hypothetical protein VIBHAR_00029 [Vibrio harveyi ATCC BAA-1116]
Length = 583
Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats.
Identities = 61/319 (19%), Positives = 118/319 (36%), Gaps = 38/319 (11%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + D T ++++ L+I + QV
Sbjct: 265 KASDIAEMINGEGNISMLSDRGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 323
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
++ I + + ++G + T + + +
Sbjct: 324 QIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGLYDGGGDGEGDDGGSS 383
Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ F V + + L AL++ + ++ P L +
Sbjct: 384 VGIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 443
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
+ A G + Y SS+GATSVT + L TP + R+ L + P V
Sbjct: 444 KPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQV 502
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR
Sbjct: 503 VKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 562
Query: 401 SRFNREETEIFIAATPFLV 419
S N ++E+ I TP +V
Sbjct: 563 SYENVGKSELLIFVTPKVV 581
>gi|331664433|ref|ZP_08365339.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli TA143]
gi|331058364|gb|EGI30345.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli TA143]
Length = 567
Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats.
Identities = 64/399 (16%), Positives = 125/399 (31%), Gaps = 45/399 (11%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF-----IADSNIRVEMVSDTV 145
G A V+ + + + + +I+ L+ + ++ + +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIA 203
+ ++ ++ + + +K++ L+I + L + I
Sbjct: 259 IATAGAP---ETDNIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWII 314
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
++ + L+Q+G S G + + LD F + AL
Sbjct: 315 DIDKTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQAL 363
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
+ +A P + A F + K V T + YG ++ P
Sbjct: 364 AQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFA 421
Query: 324 SPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ +I L + E N D+P T +P G ++++ G +D
Sbjct: 422 ARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYE 481
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 482 SRKIPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520
>gi|262394223|ref|YP_003286077.1| putative maturation protein [Vibrio sp. Ex25]
gi|262337817|gb|ACY51612.1| putative maturation protein [Vibrio sp. Ex25]
Length = 353
Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 14/233 (6%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+ QV ++ I E +++G + S A F + +
Sbjct: 131 RPQKQVFIEAVITETELGDSQEVGVNMDLALSE--------AGFVSQPTAIKKAVDNLLF 182
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATS 306
+ F ++ A+ + + L+ P + + + T G + T
Sbjct: 183 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 242
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
+ D GV L P V+ + + S+ V + R T V++
Sbjct: 243 IERKDVGVSLEVVPHVIGDHVVL--QIMQKSDSVTDSSIASDIITNTRTLQTVVKVKDRQ 300
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
TI L GL+ + + G+P+L +P+LGALFR+ + N + E+ + ++
Sbjct: 301 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 353
>gi|299138919|ref|ZP_07032096.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX8]
gi|298599073|gb|EFI55234.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX8]
Length = 901
Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats.
Identities = 71/409 (17%), Positives = 145/409 (35%), Gaps = 39/409 (9%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQV-PVDVQDVLVSDP-TKADV------VVHSPRTMYLF 90
IGK +++ + + + PVD+ V + D + T+++
Sbjct: 277 AIYQAIGKAAGLNVIFDPDYVSKSIPVDLTSVSLYDALRIVGTLSGTFWKPVTSNTIFV- 335
Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHG 149
+N L + ++ + D + + LR + I + + ++L
Sbjct: 336 AQNNRTKRTDLDDLAVQTFYLTNVSQQNDANEILVALRNLLDPALKIYLVASQNALILRA 395
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
+ +++ + + ++ + S++ L I +
Sbjct: 396 TPSELILAEKLINDLDRTRAEVVVDVAVLEVSRQKERDLGITLPT-----------SFGL 444
Query: 210 LKQI-GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL-----HAL 263
Q + SS+G + + + S + G L+ +F L +AL
Sbjct: 445 TPQFSNQNVTNNNSSTGTNTNTGSGAPTTTTSSSLTLNSLGNLNATNFAVSLSGGTVNAL 504
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----------ATSVTTHDYG 313
R L P + A GQ ++ G + T S ++G T T D G
Sbjct: 505 LSDLDTRILQNPRIRATDGQHSTLKIGEKIPVATGSYNSGVSTGLANIGVQTQFTYLDVG 564
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
V + TPTV + L+++ E+S + ++ P R A+ ++L G +LA
Sbjct: 565 VNIDITPTVHYDHEVSLKMKVEISASNGNVTISGVTEPIITQRVAEQVIQLKDGEPSILA 624
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
GLL+ + + G P L ++P F + ++ EI P +V+
Sbjct: 625 GLLQQEDTKTINGTPGLGELPFFKYFFSSQDKVQQSDEIVFLIIPHIVR 673
>gi|219566964|dbj|BAH04995.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
Length = 568
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 23/245 (9%)
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241
+ +I ++ + L+Q+G + S +
Sbjct: 326 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 385
Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
GG S + AL++ R A P + + A +
Sbjct: 386 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 445
Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
+ + GV L P V+ G + +R+ + + I G++P +
Sbjct: 446 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPITSQSEI 503
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
DT + G ++++AG + + + +P LSKIP++GALFR + + + TP
Sbjct: 504 DTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTP 563
Query: 417 FLVKP 421
++ P
Sbjct: 564 RVITP 568
>gi|17549095|ref|NP_522435.1| Hrp conserved HRCC transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|2833448|sp|Q52498|HRPA_RALSO RecName: Full=Hypersensitivity response secretion protein hrpA;
Flags: Precursor
gi|6066715|emb|CAB58261.1| HrpA [Ralstonia solanacearum]
gi|17431346|emb|CAD18025.1| hrp conserved hrcc transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|1097294|prf||2113360W hrpA gene
Length = 568
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 23/245 (9%)
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241
+ +I ++ + L+Q+G + S +
Sbjct: 326 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 385
Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
GG S + AL++ R A P + + A +
Sbjct: 386 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 445
Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
+ + GV L P V+ G + +R+ + + I G++P +
Sbjct: 446 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPITSQSEI 503
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
DT + G ++++AG + + + +P LSKIP++GALFR + + + TP
Sbjct: 504 DTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTP 563
Query: 417 FLVKP 421
++ P
Sbjct: 564 RVITP 568
>gi|194292010|ref|YP_002007917.1| sctc: non flagellar t3S system conserved protein. gsp d family
[Cupriavidus taiwanensis LMG 19424]
gi|193225914|emb|CAQ71861.1| SctC: non flagellar T3S system conserved protein. GSP D family
[Cupriavidus taiwanensis LMG 19424]
Length = 580
Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats.
Identities = 47/256 (18%), Positives = 91/256 (35%), Gaps = 20/256 (7%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKSF 230
+++ L++ V ++VTI ++ + L +G + G++ +
Sbjct: 325 RLIESLDVK-PRLVEIEVTIMDISQADLDSLGVDWRLHTPHVDLQLGGGNGNAGLSFGNL 383
Query: 231 AADFGGKFVSEGGDFSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASF 287
A + G + G G + T + AL +A P + + A+
Sbjct: 384 ANEAGTTAATIGSGLQFTGAIGSDVTRYLLTRVKALAERGQANFVARPKVLTLDNTEAAL 443
Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--GRIGLRIQTEVSEPVIGVNA 345
+ + + + G + TP V+ R + + G
Sbjct: 444 ENLQEFYVRVDGFQDAG--LFNVTAGTAVRVTPLVVDEQQNRAVMLTIDIADGNLSGETV 501
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+P R R T + G ++++AG ++ G+PLL +PI+G LF+ +
Sbjct: 502 DRIPVVRRRSITTQAMVEEGKSLLIAGYTTEEKINASSGVPLLQDVPIIGNLFKYQEKRQ 561
Query: 406 EETEIFIAATPFLVKP 421
E F TP LV P
Sbjct: 562 NNMERFYLLTPRLVIP 577
>gi|171319944|ref|ZP_02909020.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria MEX-5]
gi|171094800|gb|EDT39838.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria MEX-5]
Length = 679
Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats.
Identities = 61/348 (17%), Positives = 114/348 (32%), Gaps = 62/348 (17%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231
+ ++N L+ V + VTI ++ D L +G + G + +
Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS-----------------FETVLHALERATAIRTLAE 274
G ++ G S G F T ++AL + + ++
Sbjct: 385 NGAGNPPLTFGIGTSETGQTGAFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--------- 325
P + A+ A + Q + +S+ + G + TP ++
Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVS 502
Query: 326 ---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ + I + V G ++P + R T + G ++++AG D+++ K
Sbjct: 503 GNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNK 562
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----------PVAMRDLSRPDD 432
G+P LS IP++G LF+ + + E F TP +V PV R D
Sbjct: 563 SGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTASMYAPDGSPVNPGADGRADP 622
Query: 433 H----YSVEDDAKAF------FFNRVNKIYGPKEASEVEGQNYKGAIG 470
+ Y D+ A SE + G
Sbjct: 623 NGASMYRPPDNDIAVPLTPAPLPGTKFGPPALPPPSESASRPVATTAG 670
>gi|21230696|ref|NP_636613.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769309|ref|YP_244071.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004]
gi|188992461|ref|YP_001904471.1| HrcC protein [Xanthomonas campestris pv. campestris str. B100]
gi|21112285|gb|AAM40537.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66574641|gb|AAY50051.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004]
gi|167734221|emb|CAP52429.1| HrcC protein [Xanthomonas campestris pv. campestris]
Length = 605
Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 19/241 (7%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------------- 243
+ TI E+R L+ +G +
Sbjct: 368 QIDATIIEIRDGALQDLGVDWRFHSRRVDVQTGDGRGGQLGYDGSLSGAAAAGAAAPLGG 427
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ T + ALE+ + ++ P + + A Q + ++
Sbjct: 428 TLTAVLGDAGRYLMTRVSALEQTNKAKIVSTPQVATLDNVEAVMDHKQQAFVRVSGYASA 487
Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ GV L P+V+ G++ L ++ E + +P + T
Sbjct: 488 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GANTVDGIPVITSSEITTQA 544
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G ++++AG D Q +P LS+IP++G LF++ + + + TP +V
Sbjct: 545 FVNEGQSLLIAGYASDTDQTDLNNVPGLSRIPLVGNLFKHRQQSGSRLQRLFLLTPHIVS 604
Query: 421 P 421
P
Sbjct: 605 P 605
>gi|291280567|ref|YP_003497401.1| hypothetical protein DEFDS_P017 [Deferribacter desulfuricans SSM1]
gi|290755269|dbj|BAI81645.1| hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 531
Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 105/269 (39%), Gaps = 31/269 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFG 235
L +V L V + EV D K+ G + G+ G +F +
Sbjct: 260 DNYFKKLKERLSKEVFLDVKVLEVTYDSNKEQGIDWNALALGKYNGNKLGIRTNFVSGSP 319
Query: 236 GKFVSEGGDFS------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
F ++ FS + + + ++ + ++P ++GQ A
Sbjct: 320 DVFDTQPPGFSSLSLPVLTVSDADDVIKFIAGFVKGKGKLTVKSQPRQLVLNGQPAVIPV 379
Query: 290 GGQHLYKTVSSS-------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
G Y + SS + + T GVVL F P V I L + +
Sbjct: 380 GQIIKYISNISSDSGSDSSLTGGDLSYSVETGTLQTGVVLQFLPKVTDDNNIVLNLGVTI 439
Query: 337 S------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ E + +P VR +TV++ SG TIV+ G+L D+ +++ +PL+
Sbjct: 440 NRLDKMDEKSLNGIILQLPQTSVRAVSSTVKMKSGQTIVIGGILSDNTNEIENKVPLVGD 499
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
IPILG LF+ + + +TE+ + T +V
Sbjct: 500 IPILGNLFKYKKKEKTKTEMIVIITAHVV 528
>gi|223936189|ref|ZP_03628102.1| type II and III secretion system protein [bacterium Ellin514]
gi|223895051|gb|EEF61499.1| type II and III secretion system protein [bacterium Ellin514]
Length = 906
Score = 133 bits (334), Expect = 8e-29, Method: Composition-based stats.
Identities = 64/336 (19%), Positives = 113/336 (33%), Gaps = 97/336 (28%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------- 221
+K + LN+A Q+ +K E+ ++ K +GF +
Sbjct: 546 EKAIQTLNVA-PPQINIKAKFIEITQNDSKALGFDWFLGNFLLGGGKLGAQGGTAPSFAG 604
Query: 222 --SSSGPSKSFAADF-------------------------------GGKFVSEGGDFSVK 248
S++ PS F + +V
Sbjct: 605 APSTANPSGVFPGSPATIDPVTGLGSLPTTIPPSTSDQLITGGLRNTAGTATVPTIATVT 664
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------- 300
G+L F + ALE+ + L P +T SG+ A + T
Sbjct: 665 GLLTDPQFRVAIRALEQRDGVDLLTAPDVTTESGRQAQIQAIDIQTIVTGQQFGQGANGA 724
Query: 301 ---------------STGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP----- 339
+T + T +G VL P V + + + I V+E
Sbjct: 725 NAASGVGSTVIQNTATTSQYTTQTLPFGPVLDVIPYVSADEFSVQMTIIPTVTEFVQYDP 784
Query: 340 --------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
V A +P +R+R+ T+V + T+VL GL+ D + ++K+ +
Sbjct: 785 PGPFVPQASAIAGGTSVVGALPLPHFRMRQVTTSVTVWDSQTVVLGGLITDSVTKIKDQV 844
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
PLL +P +G LFR+ + + + I TP ++ P
Sbjct: 845 PLLGDMPFVGRLFRSESSQKTKKNLVIFVTPTIINP 880
>gi|255619353|ref|XP_002540016.1| General secretion pathway protein D precursor, putative [Ricinus
communis]
gi|223500090|gb|EEF22367.1| General secretion pathway protein D precursor, putative [Ricinus
communis]
Length = 304
Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 54/277 (19%), Positives = 88/277 (31%), Gaps = 40/277 (14%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ T + + V++ L++ QV ++ + EV + G Q
Sbjct: 28 IQADASTNSLIITAPDAVYRNLRAVIDQLDVR-RAQVYIEALVVEVTSTDASEFGVQWVG 86
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD--------------------------------FSV 247
++ S +
Sbjct: 87 LTGNNNSSYRVGGLQSFSLGGSNNNIVNLALAAATGISGSGSTTTGSSIPSPTGLSIGIF 146
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---- 303
K V + HALE L+ P + + + A+ G T S +TG
Sbjct: 147 KQVNGELGLGAIAHALESTGHANILSTPNMITLDNELATIKVGQNIPIITGSFTTGASGA 206
Query: 304 ---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+V D G++L P + G I L I E S V++ VR ++ V
Sbjct: 207 SNPFQTVDRKDVGLLLKVRPQISEGGTIKLAIYHENSGIDNSVSSASGIVTTVRAIESNV 266
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+G +VL GL+ DD + E + L IPILG L
Sbjct: 267 LADNGQIVVLGGLISDDESENNEKVRGLGDIPILGNL 303
>gi|312963506|ref|ZP_07777988.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
gi|311282312|gb|EFQ60911.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
Length = 641
Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 64/360 (17%), Positives = 137/360 (38%), Gaps = 47/360 (13%)
Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI----ERDIAHLEMTLRRFIA 132
D + + T+ ++ + ++ L + D + +++ +
Sbjct: 240 LDKKILNANTILVYPRRP---------DKEREYRELAVRTFYLSHSDPKVVGAEIKQVLK 290
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
+ V+ + V++ S+ +K++ ++IA
Sbjct: 291 PKEVLVDERLNAVIVR------------------------DGLDTLSAVEKLVEAIDIAQ 326
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGV 250
+ VT+ + + EV + +G Q+ G S G + A G +S G +
Sbjct: 327 SE-VTIDIQVLEVSLNDELNLGIQYPESVGLSVGNLANVPAGLAGIPLSALRGINGDNIL 385
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--TSVT 308
LD S ++ L+R+ TLA P + + + A+ G + T +++ +SVT
Sbjct: 386 LDAGSTSARINMLQRSGNTVTLANPRVRVRNREEAAVNIGDKVPMVTTTTANDITTSSVT 445
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPS 364
D G+ + P + + L + E+S N R T + +
Sbjct: 446 YQDVGLQITVKPNISLSDEVNLELNVEMSHITKRIPASENVQATFELGSRSTKTLLTARN 505
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVA 423
T +++GL++ G+P LS+IP +G LF ++ +++TEI + TP + + +
Sbjct: 506 NETQIVSGLIRTADVDEGAGLPWLSQIPWIGKKLFGTNQSTQQKTEIILLLTPRIERNLD 565
>gi|146298381|ref|YP_001192972.1| type II and III secretion system protein [Flavobacterium johnsoniae
UW101]
gi|146152799|gb|ABQ03653.1| GspD-like type II secretion system secretin protein [Flavobacterium
johnsoniae UW101]
Length = 634
Score = 132 bits (333), Expect = 9e-29, Method: Composition-based stats.
Identities = 57/306 (18%), Positives = 111/306 (36%), Gaps = 21/306 (6%)
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
I++E S +VL + + + E E + ++ K + ++
Sbjct: 329 EVIQLENRSIELVLPSLPKVFSEKLEIKEFVELNGLVASGSKSILEELKLYIKQIDKIVP 388
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
V ++V IA+ + Q G + + + + V+ S+ +
Sbjct: 389 -MVQIEVIIAQYNKSHDVQTGMKAGLDKINKQVTGGTVFPTTDMTVNSTSVNSLIDAFNG 447
Query: 254 FS----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F F L LE + ++ + P + ISG A + G Y S+
Sbjct: 448 FGIFKLGKVTEAFYLNLKLLENNSIVKVESTPKIATISGHEAKLSIGETSYYFEQSNRLI 507
Query: 304 ATSV----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
+++ + D + L P V + L I E S + P
Sbjct: 508 NSNIGNDILNSGTWKSTDANLSLSIKPYVSIDENVTLTIVVEKSSFLGRAGETAPPGKAT 567
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
+K ++ V + +G I+L GL + + G PLLS+IPI+ F + + + +++ I
Sbjct: 568 QKFESLVRVKNGEMILLGGLDELKKEDSGSGTPLLSRIPIIKWFFSSRKKGKNNSKLHIF 627
Query: 414 ATPFLV 419
P +V
Sbjct: 628 IKPTVV 633
>gi|322435311|ref|YP_004217523.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX9]
gi|321163038|gb|ADW68743.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX9]
Length = 819
Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats.
Identities = 56/313 (17%), Positives = 107/313 (34%), Gaps = 18/313 (5%)
Query: 121 AHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+ LR + + + + +V+ G + +Q+ + + + +
Sbjct: 278 NEILTGLRLLLDPTVKLYLVPSQNAIVMRGTTDELLLAQKLINDFDRARPEVVVDVAVLE 337
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
S+ + L I + L ++ S T +SS + S ++
Sbjct: 338 VSRDKVRTLGITLPQSIGLTPQLSNANSTSTTSSTTTTSTTTTSSTTTSSTSSLTLNNLA 397
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ L+AL R L P + A GQ A+ G + T S
Sbjct: 398 HLNATNFAVSITGGT-----LNALLTDGDTRILQNPRIRATDGQRATLKIGSKIPIATGS 452
Query: 300 SSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347
+ G T T D GV + TPTV + ++++ EVS V +
Sbjct: 453 YNAGVSTGVASIGVQTQFTYIDVGVNIDITPTVHYDREVSMKMKIEVSSQSNTVVISGVS 512
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P R ++ +++ G +LAG+L + G P L ++P F ++
Sbjct: 513 EPIISQRISEQVIQVQDGEPSILAGILTHQDSKTVSGTPFLGELPFFKYFFSTQSKETQQ 572
Query: 408 TEIFIAATPFLVK 420
E+ P +V+
Sbjct: 573 DELVFLIIPHVVR 585
>gi|15088592|gb|AAK84103.1|AF369954_1 YsaC [Yersinia enterocolitica]
Length = 526
Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats.
Identities = 61/421 (14%), Positives = 135/421 (32%), Gaps = 64/421 (15%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISI----GLNKVIILQVPVDVQDVL 70
LF S P + A I ++ G ++++ LN+ I+ Q +
Sbjct: 153 LLFVSGPPLYVELISAAAAYLDERIKQEDLASGGEVAVIPVKTLNQSPIVLYNQRGQSIT 212
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQA--NVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
+ P + + G N G + + +G+ + + + L+
Sbjct: 213 I--PG-----MLTALNALFQGNN-GTTESTLTIQPKEGEPTIEAGFPAPPSVNGGDSALK 264
Query: 129 RFIADSN-----IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ S+++V+ G + + + +L T +
Sbjct: 265 LAAGAKTSSPFSLVAYPDSNSLVVKG---SAEQIRYVRQLVHTLDNS------------- 308
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
QV L + I +V + + +G + A G
Sbjct: 309 ---------RSQVELSLWIIDVTQSKVDDLGVRWE-------------AGGIGVAGGSSV 346
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F+ + D +F + A+ + R ++ P + A F + +
Sbjct: 347 TFNRSTLSDSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARV--EGER 404
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADT 358
S+ YG ++ P + + + + E + +P +T
Sbjct: 405 VASLQQVTYGTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINT 464
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ ++++ G +D +++ + IPLLS IP+LG LF+ N+++ P L
Sbjct: 465 VARIGRDKSLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRL 524
Query: 419 V 419
+
Sbjct: 525 L 525
>gi|225874512|ref|YP_002755971.1| type II/III secretion system protein [Acidobacterium capsulatum
ATCC 51196]
gi|225792554|gb|ACO32644.1| type II/III secretion system protein [Acidobacterium capsulatum
ATCC 51196]
Length = 786
Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats.
Identities = 76/397 (19%), Positives = 137/397 (34%), Gaps = 55/397 (13%)
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V +P T+++ + + L + ++ + D ++ LR ++I
Sbjct: 218 YRVITPNTIFV-AADTRAKRMQLEDQAVQTFYLHNVTQQSDFTDIQTALRNVFQTAHIFG 276
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ +V+ + L+ + Q + + +V +
Sbjct: 277 VASQNAIVMRATPDELL-------LARQLIGQLDQP------------------KPEVLV 311
Query: 199 KVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
V + EV R+ ++IG Q S + SSS S S ++ S +
Sbjct: 312 DVAVLEVSRNFERKIGLQLPQTATVNLQASTSSSSSSSSSSSSSSSSSSSTSSSLTLNNL 371
Query: 249 GVLDRFSFETVL-----HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
L+ +F + L T + + EP + A GQ A G + T S TG
Sbjct: 372 AHLNSNNFAVTIGQAEADLLLTNTDTQIIQEPRIRASDGQDAQLKIGEKLPVATGSYQTG 431
Query: 304 ----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSY 351
T D GV + PTVLS + ++++ +VS N D P
Sbjct: 432 AATAIVSSLVNTQFQYLDVGVNIDVKPTVLSDRDVSMKVKIDVSSTNGTENLGGVDEPII 491
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R AD T+ L +G ++ G+ + G P LS++P+L +F + ++
Sbjct: 492 TQRVADETIRLKNGEANLIGGIRQVQTSNSLSGTPGLSELPLLKYIFGVHDHTVSKDDLV 551
Query: 412 IAATPFLVKP--VAMRDLSRPDDHYSVEDDAKAFFFN 446
I P +V DL D S +
Sbjct: 552 ILLIPHVVSAPTTNPNDLQPIDTGTSDAFQVRTVSQG 588
>gi|300936194|ref|ZP_07151130.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli MS 21-1]
gi|300458651|gb|EFK22144.1| type III secretion outer membrane pore, YscC/HrcC family
[Escherichia coli MS 21-1]
Length = 567
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 65/399 (16%), Positives = 126/399 (31%), Gaps = 45/399 (11%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
V+N + + I IG NKV I+ + + RT L G+
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199
Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF-----IADSNIRVEMVSDTV 145
G A V+ + + + + +I+ L+ + ++ + +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIA 203
+ V ++ ++ + + +K++ L+I + L + I
Sbjct: 259 ISTAGVP---ETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWII 314
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
++ + L+Q+G S G + + LD F + AL
Sbjct: 315 DIDKTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQAL 363
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
+ +A P + A F + K V T + YG ++ P
Sbjct: 364 AQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFA 421
Query: 324 SPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ +I L + E N D+P T +P G ++++ G +D
Sbjct: 422 ARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYE 481
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP+L IP +G LF N P +
Sbjct: 482 SRKIPILGSIPFIGILFGYEGTNANNIVRVFLIEPREID 520
>gi|149200050|ref|ZP_01877075.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa
HTCC2155]
gi|149136808|gb|EDM25236.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa
HTCC2155]
Length = 864
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 66/371 (17%), Positives = 116/371 (31%), Gaps = 112/371 (30%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--- 228
+ +++ L E+Q+ ++ E+ +D + ++ F+ SI G
Sbjct: 491 KNTPAEHGKIDRIIKELA-PAENQIIIESKFYEINQDDIDELAFEWSIARIEDGSGFTDP 549
Query: 229 -----------------------------SFAADFGGKFVSEGG---------------- 243
F+ D G S GG
Sbjct: 550 NAGYIGRDPSYVGGVNGDPNGSLNDFLSDGFSLDKSGDLTSAGGDGLESAVRSLGSVLGA 609
Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
F +L +F T++ A+++ + L P +T +G +A + +
Sbjct: 610 PGLSQGTFKFASILGDTTFNTLVSAIQQRSGEDVLNAPKVTTQNGHTAKIRVVQERYFPE 669
Query: 298 VSSS-------------------TGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVS 337
+ D G VL TP + R I L+++ EV
Sbjct: 670 EWEEPEVEQNSQGDGGSASTVTPSKPVFGEPRDIGAVLTVTPQIDPDQRVIELQLKPEVI 729
Query: 338 EPVIGVNAGDM--------------------------------PSYRVRKADTTVELPSG 365
E V N ++ P + R DTTV + G
Sbjct: 730 EFVEYDNTFNVDMLVGQEVTFIPIIGNPFTVTVYTAFEQKFSMPIFESRTVDTTVRVWDG 789
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----P 421
T+ L G++ ++ ++ IP L IP LG F ++ + + I T L+ P
Sbjct: 790 ETLALGGMISENKTTYEDKIPYLGDIPFLGRFFTSNGERSVKQNLIIFVTARLIDPSGLP 849
Query: 422 VAMRDLS-RPD 431
V+ LS PD
Sbjct: 850 VSPGTLSGLPD 860
>gi|53722566|ref|YP_111551.1| Type III secretion system protein [Burkholderia pseudomallei
K96243]
gi|52212980|emb|CAH39018.1| Type III secretion system protein [Burkholderia pseudomallei
K96243]
Length = 620
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 318 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 376
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 377 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 425
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 426 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 483
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 484 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 543
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 544 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 603
>gi|254264759|ref|ZP_04955624.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1710a]
gi|254215761|gb|EET05146.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1710a]
Length = 620
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 318 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 376
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 377 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 425
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 426 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 483
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 484 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 543
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 544 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 603
>gi|134282090|ref|ZP_01768796.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 305]
gi|134246619|gb|EBA46707.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 305]
Length = 625
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608
>gi|126457615|ref|YP_001076120.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia pseudomallei 1106a]
gi|226195991|ref|ZP_03791577.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei Pakistan 9]
gi|242310941|ref|ZP_04809958.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1106b]
gi|254186863|ref|ZP_04893379.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei Pasteur 52237]
gi|126231383|gb|ABN94796.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1106a]
gi|157934547|gb|EDO90217.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei Pasteur 52237]
gi|225931884|gb|EEH27885.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei Pakistan 9]
gi|242134180|gb|EES20583.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1106b]
Length = 625
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608
>gi|217425200|ref|ZP_03456695.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 576]
gi|217391805|gb|EEC31832.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 576]
Length = 624
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 322 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 380
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 381 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 429
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 430 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 487
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 488 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 547
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 548 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 607
>gi|282892150|ref|ZP_06300624.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497951|gb|EFB40296.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 852
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 57/321 (17%), Positives = 112/321 (34%), Gaps = 44/321 (13%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF------- 245
+ V ++V + E R + Q G TG+++ + + + + F
Sbjct: 529 KKMVQIEVLLFEKRLNRDNQFGLNLLRTGNAATNTHTTSVQWNNIFPVGASVVHPENAGV 588
Query: 246 ------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----- 294
K +++ L I+ A P++ AI+ A+ +
Sbjct: 589 FEYLVSRTKTASGIPAYDFAYRFLLSQDDIQINASPSVVAINQTPATIEIAEEISVSTGI 648
Query: 295 --YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG--------LRIQTEVSEPVIGVN 344
T + T S YG+ + PT+ + + ++T++ I +
Sbjct: 649 FEIPTEGNVTLKDSFARARYGIKIEIIPTIHVREDMNDPEDPVDYVTLETDILFETINPS 708
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
P R V +P T+++ GL + ++ KE IP L +IP +G LF ++
Sbjct: 709 VDSRPDVTRRHITNQVRIPDQQTVIIGGLRRKNLSDSKESIPYLGEIPGIGKLFSITQLT 768
Query: 405 REETEIFIAATPFLVKPVA--------MRDLSRPDD------HYSVEDDAK--AFFFNRV 448
TE+FI TP ++ A RP D ++A+ F +
Sbjct: 769 DSATEMFIFITPKIITEAAEDFDRIRCEEMQRRPGDIPGFLCRLQRAEEAEKNRIFQGYL 828
Query: 449 NKIYGPKEASEVEGQNYKGAI 469
++G ++ +G
Sbjct: 829 TMLFGRPPERCIQDCIPRGEY 849
>gi|237508896|ref|ZP_04521611.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei MSHR346]
gi|254185160|ref|ZP_04891749.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1655]
gi|184215752|gb|EDU12733.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1655]
gi|235001101|gb|EEP50525.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei MSHR346]
Length = 625
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608
>gi|67639412|ref|ZP_00438272.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia mallei GB8 horse 4]
gi|124382842|ref|YP_001025856.1| type III secretion system protein BsaO [Burkholderia mallei NCTC
10229]
gi|126445673|ref|YP_001077941.1| type III secretion system protein BsaO [Burkholderia mallei NCTC
10247]
gi|254175971|ref|ZP_04882629.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
10399]
gi|254359082|ref|ZP_04975354.1| type III secretion system protein BsaO [Burkholderia mallei
2002721280]
gi|126238527|gb|ABO01639.1| type III secretion system protein BsaO [Burkholderia mallei NCTC
10247]
gi|148028269|gb|EDK86229.1| type III secretion system protein BsaO [Burkholderia mallei
2002721280]
gi|160697013|gb|EDP86983.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
10399]
gi|238519949|gb|EEP83414.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia mallei GB8 horse 4]
Length = 625
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608
>gi|46447532|ref|YP_008897.1| putative protein of the general secretion pathway [Candidatus
Protochlamydia amoebophila UWE25]
gi|46401173|emb|CAF24622.1| putative protein of the general secretion pathway [Candidatus
Protochlamydia amoebophila UWE25]
Length = 829
Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats.
Identities = 45/258 (17%), Positives = 79/258 (30%), Gaps = 31/258 (12%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--------VSEGGD 244
+ V ++ + E G G + + + G
Sbjct: 497 KKMVQIETLLFEKILTRENTFGLNLLKIGEHIAKNTNLTGATFNNIFPVKGEFTPANAGV 556
Query: 245 FSVK-----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298
F +F+ L ++ + P++ ++ A+ T
Sbjct: 557 FDFLLSRKQTSSGIPAFDLAYRFLLSQDDVQINSNPSILTMNQTPATIAVNEDISINTGI 616
Query: 299 ------SSSTGATSVTTHDYGVVLHFTPTV----------LSPGRIGLRIQTEVSEPVIG 342
+T + T YG+ + PT+ + L G
Sbjct: 617 FEVETAKGTTLKDAFTRAQYGITISVKPTIHLNQHDTEDEWDFDYVTLETDITFDTIHAG 676
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
P R V++P G TI+L GL + K+ IP L ++P LG LF +
Sbjct: 677 -GDRSRPDVTRRHITNQVQVPDGDTIILGGLRRKTTNDNKDSIPFLGELPGLGKLFSTNS 735
Query: 403 FNREETEIFIAATPFLVK 420
+E+FI TP +VK
Sbjct: 736 LKDSSSEMFIFITPHIVK 753
>gi|254301448|ref|ZP_04968892.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 406e]
gi|157811001|gb|EDO88171.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 406e]
Length = 625
Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608
>gi|83747847|ref|ZP_00944880.1| HrcC [Ralstonia solanacearum UW551]
gi|207739230|ref|YP_002257623.1| hrp protein hrcc [Ralstonia solanacearum IPO1609]
gi|83725494|gb|EAP72639.1| HrcC [Ralstonia solanacearum UW551]
gi|206592603|emb|CAQ59509.1| hrp conserved protein hrcc [Ralstonia solanacearum IPO1609]
Length = 567
Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats.
Identities = 48/245 (19%), Positives = 89/245 (36%), Gaps = 23/245 (9%)
Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240
+ +I ++ L+Q+G + S +G + + G S
Sbjct: 325 ISASIIDITETALEQLGVDWRLHNSRLDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 384
Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
GG S + AL++ R A P + + A +
Sbjct: 385 TPAGGVLSAVIGGGSRYLMARISALQQTNQARVTASPKVATLDNTEAVMDNRQNFYVPVA 444
Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
+ + GV L P V+ G + +R+ + + I G++P +
Sbjct: 445 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPVTSQSEI 502
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
DT + G ++++AG D + + IP LSKIP++GALFR + + + TP
Sbjct: 503 DTQALINEGESLLIAGYSVDQQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVTP 562
Query: 417 FLVKP 421
++ P
Sbjct: 563 RVITP 567
>gi|126442335|ref|YP_001063169.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia pseudomallei 668]
gi|126221826|gb|ABN85331.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 668]
Length = 617
Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 315 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 373
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 374 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 422
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 423 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 480
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 481 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 540
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 541 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 600
>gi|171060459|ref|YP_001792808.1| type II and III secretion system protein [Leptothrix cholodnii
SP-6]
gi|170777904|gb|ACB36043.1| type II and III secretion system protein [Leptothrix cholodnii
SP-6]
Length = 596
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/450 (15%), Positives = 144/450 (32%), Gaps = 95/450 (21%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV-------- 80
+ + ++ + + + ++ + + ++D + +
Sbjct: 71 TLQLRDVPLGLALDSLAGSTGLRLIRDRDVRTDAR---STLFLTDARVGEALEVLLLSQQ 127
Query: 81 ----VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
RT ++ + G+ + +L + A + L+ + +I
Sbjct: 128 LAMRALDGRTALIYPNTPAK-----QRTYGELQVRTFVLRHTEAATMATLLKSLVKSQSI 182
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ S+T+VL ++L+E ++ + R V
Sbjct: 183 VTDPRSNTLVLRDTP-------EVLQLAEQLIAINDRPSGD------------------V 217
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
++V + EV R L ++G P+ A
Sbjct: 218 VIEVQLIEVNRQRLSRLGLSW--------PTSLSIATPASATTLGALRALGGDAWLASPL 269
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---------- 306
L+ + +A P++ A + A G + T ++ S
Sbjct: 270 ALGLNLQLQDIGATVIANPSVRARHKEKARLLIGDKVPVMTTQLASMGGSGASAAAPATT 329
Query: 307 ------------------------------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
V D G L P V + G + L I E+
Sbjct: 330 APVTAAEGQAGQAEQAGQAGDGGTVMFSGSVQYIDVGFKLEVEPQVHADGDVDLDIDIEL 389
Query: 337 SEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
S+ ++ +Y+ VR+A T++ L G T L GL++ + G+P LS++P++
Sbjct: 390 SQITQTLDTDSGVAYQLGVRQAQTSMRLRDGETQWLGGLIRRQERAAMSGLPGLSQLPVI 449
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
G LF + +TE+ +A TP + +PV
Sbjct: 450 GRLFGLESQDTADTELVLAVTPRIARPVPP 479
>gi|8996028|gb|AAF82327.1|AF005744_3 YsaC [Yersinia enterocolitica]
Length = 525
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/421 (14%), Positives = 134/421 (31%), Gaps = 65/421 (15%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISI----GLNKVIILQVPVDVQDVL 70
LF S P + A I ++ G ++++ LN+ I+ Q +
Sbjct: 153 LLFVSGPPLYVELISAAAAYLDERIKQEDLASGGEVAVIPVKTLNQSPIVLYNQRGQSIT 212
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQA--NVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
+ P + + G N G + + +G+ + + + L+
Sbjct: 213 I--PG-----MLTALNALFQGNN-GTTESTLTIQPKEGEPTIEAGFPAPPSVNGGDSALK 264
Query: 129 RFIADSN-----IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ S+++V+ G + + + +L T +
Sbjct: 265 LAAGAKTSSPFSLVAYPDSNSLVVKG---SAEQIRYVRQLVHTLDNS------------- 308
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
QV L + I +V + + +G + G
Sbjct: 309 ---------RSQVELSLWIIDVTQSKVDDLGVRWEA--------------GGIGVAGGSV 345
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F+ + D +F + A+ + R ++ P + A F + +
Sbjct: 346 TFNRSTLSDSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARV--EGER 403
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADT 358
S+ YG ++ P + + + + E + +P +T
Sbjct: 404 VASLQQVTYGTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINT 463
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ ++++ G +D +++ + IPLLS IP+LG LF+ N+++ P L
Sbjct: 464 VARIGRDKSLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRL 523
Query: 419 V 419
+
Sbjct: 524 L 524
>gi|221200554|ref|ZP_03573596.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia multivorans CGD2M]
gi|221206234|ref|ZP_03579248.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia multivorans CGD2]
gi|221174246|gb|EEE06679.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia multivorans CGD2]
gi|221179895|gb|EEE12300.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia multivorans CGD2M]
Length = 678
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 43/314 (13%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSE 241
V + VTI ++ D L +G + G++ + G ++
Sbjct: 333 RPRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTF 392
Query: 242 GGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQS 284
G S G F T ++AL + + ++P + A+
Sbjct: 393 GIGASESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTE 452
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRI 332
A + Q + +S+ + G + TP ++ + + I
Sbjct: 453 AILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGRPESVMMSI 510
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ V G ++P + R T + G ++++AG D+++ K G+P LS IP
Sbjct: 511 DIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIP 570
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNK 450
++G LF+ + + E F TP +V + D S + D R
Sbjct: 571 LIGNLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPD 630
Query: 451 IYGPKEASEVEGQN 464
+
Sbjct: 631 NDIAVPLTPRPLPG 644
>gi|221209590|ref|ZP_03582571.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia multivorans CGD1]
gi|221170278|gb|EEE02744.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia multivorans CGD1]
Length = 678
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 43/314 (13%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSE 241
V + VTI ++ D L +G + G++ + G ++
Sbjct: 333 RPRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTF 392
Query: 242 GGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQS 284
G S G F T ++AL + + ++P + A+
Sbjct: 393 GIGASESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTE 452
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRI 332
A + Q + +S+ + G + TP ++ + + I
Sbjct: 453 AILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGRPESVMMSI 510
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ V G ++P + R T + G ++++AG D+++ K G+P LS IP
Sbjct: 511 DIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIP 570
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNK 450
++G LF+ + + E F TP +V + D S + D R
Sbjct: 571 LIGNLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPD 630
Query: 451 IYGPKEASEVEGQN 464
+
Sbjct: 631 NDIAVPLTPRPLPG 644
>gi|161520290|ref|YP_001583717.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia multivorans ATCC 17616]
gi|189353532|ref|YP_001949159.1| putative type II secretory pathway [Burkholderia multivorans ATCC
17616]
gi|160344340|gb|ABX17425.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia multivorans ATCC 17616]
gi|189337554|dbj|BAG46623.1| putative type II secretory pathway [Burkholderia multivorans ATCC
17616]
Length = 678
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 43/314 (13%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSE 241
V + VTI ++ D L +G + G++ + G ++
Sbjct: 333 RPRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTF 392
Query: 242 GGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQS 284
G S G F T ++AL + + ++P + A+
Sbjct: 393 GIGASESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTE 452
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRI 332
A + Q + +S+ + G + TP ++ + + I
Sbjct: 453 AILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGRPESVMMSI 510
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ V G ++P + R T + G ++++AG D+++ K G+P LS IP
Sbjct: 511 DIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIP 570
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNK 450
++G LF+ + + E F TP +V + D S + D R
Sbjct: 571 LIGNLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPD 630
Query: 451 IYGPKEASEVEGQN 464
+
Sbjct: 631 NDIAVPLTPRPLPG 644
>gi|304311658|ref|YP_003811256.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
gi|301797391|emb|CBL45611.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
Length = 598
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 18/281 (6%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
+ + R V + + ++ L++ + ++ TI +V D L++
Sbjct: 298 SEEGISRIVADPQRNAIIIRDKPELMPLYENLVKNLDVPSPV-IEIEATIIDVNTDKLRE 356
Query: 213 IGFQHSITGSSSGPSKS-----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
G + + A D G + + +R F L+
Sbjct: 357 QGVDWGWSNGRTSAMTGEVDAKNNFLEVLAGDAISGLAQNAGMQAGTIIGNRNRFVARLN 416
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
LER ++ + P + ++ A S + G VL TP
Sbjct: 417 LLEREGVVKVASRPKVVTLNDLEAVLESSRSVYVPV--QGAYDVDLFKVFSGTVLRVTPH 474
Query: 322 VLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
V++ +I L I E + + + PS T + +++L GL + +
Sbjct: 475 VINDVGTKKIRLIISAE-DGVIDEHSTNNAPSVTRNAVSTQAVIEGETSLLLGGLSRTES 533
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+PLL IP+LGALFR+ + +E TP L+
Sbjct: 534 ITQVRKVPLLGSIPLLGALFRSEAKVVQNSERLFLITPRLL 574
>gi|53716325|ref|YP_106133.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
23344]
gi|52422295|gb|AAU45865.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
23344]
Length = 606
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 304 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 362
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 363 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 411
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 412 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 469
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 470 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 529
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 530 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 589
>gi|269118877|ref|YP_003307054.1| type II and III secretion system protein [Sebaldella termitidis
ATCC 33386]
gi|268612755|gb|ACZ07123.1| type II and III secretion system protein [Sebaldella termitidis
ATCC 33386]
Length = 368
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 11/231 (4%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+ Q+ +K TI + ++ +++G S ++ A+DF F+ S
Sbjct: 135 RPKKQIQIKATIIDTSDNLFERLGVDFSAGKNNDNK----ASDFLSSFIDGNLSLSGLLK 190
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSV 307
+ AL+ I+ A P L + G + + S+ T
Sbjct: 191 TGGNFLGINIDALKENGDIKIEAMPVLLILEGSEGELRVTEEVIVGEKKSTIKDTEYIEP 250
Query: 308 TTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELP 363
+ GVV P + G I L I +E+S + N D + + K ++ V
Sbjct: 251 VFAEAGVVFKIKPEIRGFGDSQEIILYIDSEISNFKLSSNFNADQGAKQKNKINSIVSFK 310
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+G ++ + GL ++ + ++ +P+LSKIPILG+LFR R N+E +I+I
Sbjct: 311 NGTSVFIGGLKQNVQKDSEKRVPVLSKIPILGSLFRYKRKNKEIRDIYIEI 361
>gi|313681848|ref|YP_004059586.1| pilus (msha type) biogenesis protein mshl [Sulfuricurvum kujiense
DSM 16994]
gi|313154708|gb|ADR33386.1| pilus (MSHA type) biogenesis protein MshL [Sulfuricurvum kujiense
DSM 16994]
Length = 533
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/269 (21%), Positives = 99/269 (36%), Gaps = 34/269 (12%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------------- 218
++ L + QV + V + V G S
Sbjct: 222 TATNSQMKRLDTYLDDLQKKMQTQVLIDVKMYSVIFSDASSTGIDWSQLYALQNIDLTFD 281
Query: 219 -ITGSSSGPSKSFAADFGGKFVSEGG------DFSVKGVLDRFSFETVLHALERATAIRT 271
+ G S + G F G SV + + S V+ L+ + +
Sbjct: 282 YVNSKDVGKFTSTNLNTGTSFDEYGTDSVGRTGASVFRLGAKGSLNEVIKFLKTQGDVYS 341
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---------ATSVTTHDYGVVLHFTPTV 322
++ P + ++ Q A T+G + YKT SS++ V++ GV+L TP +
Sbjct: 342 ISNPKILTLNNQPALITAGTELFYKTKSSTSTTAASTTTSENEIVSSVFSGVLLDITPEI 401
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDD 377
G I LRI +SE +N+ + P R+ + + + G ++L GL+
Sbjct: 402 SKDGSITLRINPSISETASVINSSNEQRSMPPDLSRRQMSSVISVQDGSRVILGGLINTK 461
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+PLL IP+LG LF+ N++
Sbjct: 462 NVNDTNKVPLLGDIPVLGYLFKKEGLNKK 490
>gi|172063770|ref|YP_001811421.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia ambifaria MC40-6]
gi|171996287|gb|ACB67205.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria MC40-6]
Length = 680
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 72/449 (16%), Positives = 140/449 (31%), Gaps = 85/449 (18%)
Query: 72 SDPTKADVVVH-------SPRTMYLFGKN---VGQANVI--LIGHDGKQMLNLDILIERD 119
++ AD+ S T+ GK G A ++ L G G
Sbjct: 188 ANGAHADIRAFRLRYGWASDFTINRSGKEVTVPGVATILRRLFGKGGGT------NEPPS 241
Query: 120 IAHLEMTLRRFIADSNIRVE-MVSDTVVLHGMVR--TIQDSQRAVELSETFLSQSGRNQY 176
L R+ S + + D + G R + + A F + G +
Sbjct: 242 STPLGQAARQVKLGSGLTIAVPRLDFPDISGGARQGSYGGADSAAGGFSPFSNAGGGDTL 301
Query: 177 ANSSSKKVMNLLNIA------------------GEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ +N + + V + VTI ++ D L +G
Sbjct: 302 PQIVADPAINAVIVRDLPENMYRYQSLINQLDERPRIVEINVTIIDINEDSLDSLGIDWR 361
Query: 219 IT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
+ G + + G ++ G S G F
Sbjct: 362 LHTTHGDVQIGNGQNPLNGNTQYNGAGNPPLTFGIGTSETGQTGAFLPTGIALTASIGGS 421
Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
T ++AL + + ++P + A+ A + Q + +S+ +
Sbjct: 422 LRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLTQFYVQVQGYQD--SSLYSVT 479
Query: 312 YGVVLHFTPTVLSP------------GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
G + TP ++ + + I + V G ++P + R T
Sbjct: 480 TGTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTK 539
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ G ++++AG D+++ K G+P LS IP++G LF+ + + E F TP +V
Sbjct: 540 TMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVV 599
Query: 420 K-----PVAMRDLSRPDDHYSVEDDAKAF 443
++ D + A +
Sbjct: 600 TTASMYAPDGSPVNPGADGPADPSGASMY 628
>gi|238755999|ref|ZP_04617324.1| Possible type III secretion system protein [Yersinia ruckeri ATCC
29473]
gi|238705788|gb|EEP98180.1| Possible type III secretion system protein [Yersinia ruckeri ATCC
29473]
Length = 558
Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 21/232 (9%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L + I ++ + L ++G + SI +G G F+ + +
Sbjct: 299 RRQVELSLWIIDISKKKLDEVGVRWSIGDLKAGGG--------------GIAFNQSTLSN 344
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
F + A+ R + ++ P + A F + + + Y
Sbjct: 345 SAKFLARVDAISRTGDAQIVSRPIVLTQENIPALFDNNSSFYARL--EGERVAKLEQVTY 402
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGT 367
G ++ P + ++ + + E P + G +P T + +
Sbjct: 403 GTMVSVLPRISQGDQVEMDVNIEDGSPGRAGSNDVDQIGGLPIVNRTNISTVARIAKDSS 462
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+++ G +D +++ E IPLL IP LG LF N+++ P L+
Sbjct: 463 LLIGGYTRDQLEESDEKIPLLGSIPYLGRLFSYRSSNQQKMIRVFLIQPRLL 514
>gi|256846641|ref|ZP_05552097.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2]
gi|256717861|gb|EEU31418.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2]
Length = 515
Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 21/241 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
QV + I ++ ++ +++GF + ++ G V +
Sbjct: 267 PKQVKITSQILDISNNLFEELGFNWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 326
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
+ ++ LE + + PTL SG+ F + + +
Sbjct: 327 QFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
+ + G+++ P + I L I E+S+ N ++
Sbjct: 387 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 446
Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++
Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506
Query: 412 I 412
I
Sbjct: 507 I 507
>gi|260888944|ref|ZP_05900207.1| hypothetical protein GCWU000323_00103 [Leptotrichia hofstadii
F0254]
gi|260861391|gb|EEX75891.1| putative general secretion pathway protein D [Leptotrichia
hofstadii F0254]
Length = 399
Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats.
Identities = 65/311 (20%), Positives = 124/311 (39%), Gaps = 40/311 (12%)
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
R++ + L F V + + V+ G +++ +R ++ +
Sbjct: 117 EYRNVKDITEALNGFF---GFEVIGIDNKVIFSGDESKVEEMKRIIKSLD---------- 163
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADF 234
++Q+ +K TI + ++ +++G SI ++S + + A F
Sbjct: 164 ---------------KEKEQIIIKGTIIDTSSNLFERLGIDWSINSNNSNATKDNLVAKF 208
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
VS FS G F + L+ IR A PTL + + + L
Sbjct: 209 LNGEVSIASIFSKGGRFLGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVL 264
Query: 295 YKTVSSSTGATSVT---THDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVNAG-D 347
++ T + G+V P + +I L+I TE+S + +
Sbjct: 265 VGEKKTTKKDTEYVEPIFSEAGIVFRINPEIRKINGIKKILLKIDTEISNFKLTSSYNAS 324
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ + + TT+ L +GG+ + GL +D ++ +P+LSKIPI+G LF+ R NRE
Sbjct: 325 SGAKQKNQTKTTITLNNGGSTFIGGLKQDVSKETIRRVPVLSKIPIIGPLFKYRRTNREM 384
Query: 408 TEIFIAATPFL 418
+I+I +
Sbjct: 385 RDIYIEIEAVI 395
>gi|119897096|ref|YP_932309.1| general secretion pathway protein D [Azoarcus sp. BH72]
gi|119669509|emb|CAL93422.1| general secretion pathway protein D [Azoarcus sp. BH72]
Length = 580
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 66/306 (21%), Positives = 117/306 (38%), Gaps = 34/306 (11%)
Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
D+ V E+ + +S + ++ + A QV ++ TI EV Q G
Sbjct: 260 DADAVVSNRESGVLVVRATARQHSRIAEFIDAVQRAARRQVMIEATIVEVALGDEYQQGI 319
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
G+ + + + S + L LE + + L+ P
Sbjct: 320 DWRRLGNPNWRVAARGSGDANALTPTLSYLS-------DRLDVRLDLLETFGSAKILSSP 372
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA------------TSVTTHDYGVVLHFTPTVL 323
L+ ++ Q+A + +Y V +ST T+ + G+V+ T V
Sbjct: 373 RLSVLNNQTAMLKVVEEVVYFLVDASTTQYDDADREKTTATTTPQSVSVGMVMALTAQVS 432
Query: 324 SPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
+ G I L ++ +S P +G +P R R+ ++ + L SG T VL GL+
Sbjct: 433 AGGEIILNVRPTISSISGFKDDPNPSLGSIPNRVPQIRTREIESVLRLRSGETAVLGGLI 492
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLS----- 428
+D + IPLL +P+LG +F + +E+ I P +V P D +
Sbjct: 493 EDKVDYDTGRIPLLGSLPLLGEVFSHRDNAVRRSELVIFLRPVVVEDPALGGDYAELRQH 552
Query: 429 RPDDHY 434
PD +
Sbjct: 553 LPDAGF 558
>gi|304321270|ref|YP_003854913.1| general secretion pathway protein D [Parvularcula bermudensis
HTCC2503]
gi|303300172|gb|ADM09771.1| general secretion pathway protein D [Parvularcula bermudensis
HTCC2503]
Length = 736
Score = 131 bits (328), Expect = 4e-28, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 5/176 (2%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTH 310
+ +L AL+ + L P++ + + + G + T + G +
Sbjct: 484 YGVLLSALQSDSQSNVLQVPSIVLLDNEEGTIQVGQEVPVVTGEAVGSDFQGGFRQIERK 543
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
+ G +L P + + + L++ EVS P D TV G T+VL
Sbjct: 544 NIGNILQVKPQITAGNTVQLKLNLEVSSLGAFAPDAQGPITNESILDLTVSAEDGQTLVL 603
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
GL+ D +Q + +P+L IP+LG LF+ + +E+ + I P +++ D
Sbjct: 604 GGLVDKDRRQTESKVPVLGDIPLLGNLFKGQAQSDQESTLMIFIRPTILRDAQAAD 659
Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 49/381 (12%), Positives = 114/381 (29%), Gaps = 37/381 (9%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI--SIGLNKVIILQVP---VDV 66
+ L + + + PI E+N+ +I + + + + I ++K ++ +P
Sbjct: 149 AAANLRALAGENSLVTPIVESNSLIIVDTPNNVSRLLSVVDRIDVDKSVVRSIPLDNAAA 208
Query: 67 QDVLVSDPTKAD--------------VVVHSPRTMYLFGKNVGQANVI-----LIGHDGK 107
+V + + V V + ++ L G+ + ++ L
Sbjct: 209 SEVAATLSEIVNRPGGQGSRQSSVSIVAVDASNSVVLRGEPEEISRLVPIIRELDSPSRS 268
Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD------TVVLHGMVRTIQDSQRAV 161
Q+ I + + L + + + I V + + T G + +
Sbjct: 269 QVALDTIYLNHANGAQIVPLIQALLNEPITVAVSGEDDEGRVTTTQSGRQNSGPRASSIA 328
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
+ T + +++ L+I QV ++ I E+ +++G Q+ G
Sbjct: 329 FHAPTNSLVIKAPPETQRLIRGIVSRLDIRRP-QVLIEAVIVEIADTTARELGVQYVSGG 387
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL---- 277
+ S + + VS G D T + + +
Sbjct: 388 AGLPLSAASFSSTRPNVVSAAGAALFLNEQDDNDNVTTITTTSANGDVTVTEGQSYDAND 447
Query: 278 --TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
AI+GQ + G + YGV+L + + +
Sbjct: 448 PDLAIAGQLVEAAVQELLNFNGFLFGAGGETGDGGVYGVLLSALQSDSQSNVLQVPSIVL 507
Query: 336 VSEPVIGVNAGDMPSYRVRKA 356
+ + G +A
Sbjct: 508 LDNEEGTIQVGQEVPVVTGEA 528
>gi|91203965|emb|CAJ71618.1| hypothetical protein kustc0873 [Candidatus Kuenenia
stuttgartiensis]
Length = 844
Score = 131 bits (328), Expect = 4e-28, Method: Composition-based stats.
Identities = 56/267 (20%), Positives = 96/267 (35%), Gaps = 31/267 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ V+ L + QV ++ V + L+ IG + S + + AAD G S
Sbjct: 553 EDVLASLRTSQNLQVNIEARFITVTDEFLEDIGTDITRFFSDNTSVSTGAADIAGDLGS- 611
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT---AISGQSASFTSGGQHLYKTV 298
G + + + L A++ + L P +T G A + TV
Sbjct: 612 -GIDLNFAIFGNSALKGFLKAVQESKGSEVLTSPRITLSNTQRGNIAVLQTRNYIQSTTV 670
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEV-----------SEPVIGVNAG 346
+ T G P V + + + L + V S GV+ G
Sbjct: 671 EDGIVTPVIGTVPEGTTFDVRPIVSADRKFVYLEVTPSVFAIEEIESFTFSGLSEGVSVG 730
Query: 347 D--------------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+P V + TV +P GT+++ GL + G+P+LSKIP
Sbjct: 731 GGDGTTYIPPEQTIQLPKLNVSQVSVTVYVPDKGTLMIGGLGSLSNKDETSGVPVLSKIP 790
Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
I+ LF + R ++ + I P ++
Sbjct: 791 IIKRLFTRDQKTRNKSNLIILLKPTII 817
>gi|76663415|emb|CAE47791.1| pilus assembling protein [Bdellovibrio bacteriovorus]
Length = 510
Score = 131 bits (328), Expect = 4e-28, Method: Composition-based stats.
Identities = 75/419 (17%), Positives = 156/419 (37%), Gaps = 35/419 (8%)
Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
+ + P E A + + I + K + +V ++ L+ D ++ +
Sbjct: 88 IMRFTPKSEGFATLTIHDKRNGKIVAEFRIDVKKSKLDKVVREM-RALLGDIEGINIKIV 146
Query: 83 SPRTMY----LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
+ R + L K++ + ++ G Q +L L + + R I + I V
Sbjct: 147 NNRVVVDGQILLPKDLARIYNVVQ-QFGDQASSLVTLSPLAQKKIAEFIARDINNPEIEV 205
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ--------SGRNQYANSSSKKVMNLLNI 190
V++ ++L G + ++S+RA +++T+L G + ++ V+NL+ I
Sbjct: 206 RAVNEKIILQGWANSDEESKRAEIIAKTYLPDIVIEAAEEKGVIKKRKPANDGVINLIQI 265
Query: 191 A------GEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGG 243
+ L V E+ +D K FQ + G +S + D G +S
Sbjct: 266 KAAPPAAPAKMIQLVVHYVELNKDYSKAFKFQFTPELGDNSTMTFQTGGDSPGGVISSIT 325
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ L+ ++ R L +L G+ Y V G
Sbjct: 326 GTV-------SNLLPKLNWAKQHGHARVLESTSLIVEDGKKGEIKQVTNQPYP-VIGKDG 377
Query: 304 ATSVTTHDYGVVLHFTPTVLSP--GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ G+V TP +L G + + + +VS +G P + + V
Sbjct: 378 TQGTAFAEVGIVTSITPQLLGEKSGSVRMDMAFKVSSL-LGNTPSGAPITSANEMSSAVT 436
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + + GL+++ P K PI+ +L+ + F +++++ + TP +VK
Sbjct: 437 VRDRQSAAVGGLIRNSTSTGYNR-PAGQKNPII-SLYASKDFIKQQSQFVVFVTP-IVK 492
>gi|226356752|ref|YP_002786492.1| secretin [Deinococcus deserti VCD115]
gi|226318742|gb|ACO46738.1| putative Secretin precursor (GSP D family protein) [Deinococcus
deserti VCD115]
Length = 690
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 69/433 (15%), Positives = 145/433 (33%), Gaps = 44/433 (10%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV---IILQVPVDVQDVLV 71
L ++ K+ + + VI ++ + +++ +++ VQ V
Sbjct: 275 ALLAAQYPGLKVTAVGQTGQLVITGPQNQLDAALTLLGQVDRPTPPVVVVKDQTVQRVF- 333
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVIL-IGHDGKQMLNLDILIERDIAHLEMTLRRF 130
+ + + G + L + N ++
Sbjct: 334 --------TLVNSSAEEVKATLEGTLSRDLSTNTGSNLVPNATLINPLTGQPYTTGPLAN 385
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ S + + + AV + + + + +V L+
Sbjct: 386 VPVSAAAAAPGAAPATTGAAAPSTPAAATAVSIIADKRTNTLIVRGTAEQVAQVAELIPQ 445
Query: 191 --AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
+ Q+ ++V I E+ + +G S F
Sbjct: 446 LDSRVPQINVQVRIQEITESAARSLGVNLKAGFGGFNVSTGAGG--------LSAAFDPT 497
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------------- 294
L F+ L+ L+ +++ + T+T SGQ A ++
Sbjct: 498 QSLVGFNLGATLNTLQNQGLSKSIYDGTITMQSGQRALGSTTDAQNASSTAAASIKSGGR 557
Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP- 349
++ DYGV L F +P V G I LR++ +V++ +NA +P
Sbjct: 558 LEINIPSQAANVPAIQRQIDYGVNLDFFSPQVAPDGTITLRVRGQVNDLQTAINASTIPN 617
Query: 350 --SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ +A TT+ +G T++L+GLL G+P LS IP++GALF ++
Sbjct: 618 LLQFTNSEAQTTLTFKNGETLLLSGLLATKESSTNSGVPFLSSIPVVGALFGQQTTRSQK 677
Query: 408 TEIFIAATPFLVK 420
T++ + T +++
Sbjct: 678 TQLLVVITGNVLR 690
>gi|330937041|gb|EGH41129.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. pisi str. 1704B]
Length = 364
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 6/198 (3%)
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ + + GG + + G S + + F LHALE + + P++ + Q A
Sbjct: 6 WNFNAGSVNGGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPA 65
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIG 342
S ++ G L TP L ++ L + E + I
Sbjct: 66 VIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDIS 123
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNS 401
PS R T + G++V+ G + +PLL IP +G LF++
Sbjct: 124 DINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGKLLFQSR 183
Query: 402 RFNREETEIFIAATPFLV 419
+ E TP L+
Sbjct: 184 SRELSQRERLFILTPRLI 201
>gi|238763779|ref|ZP_04624738.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638]
gi|238698081|gb|EEP90839.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638]
Length = 425
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 6/207 (2%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
QV L I + R+ L+++G + + + F + + F+V +
Sbjct: 217 QQVQLAAHIVTISRENLQELGVRWGMGEPQPTSALRMSDFNVNLPLPTSAVSAGFNVARI 276
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
R + ALE+ + +A P L Q+AS G Y G T++
Sbjct: 277 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGTTTIEFK 335
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
+ + + TP +L G+I L ++ + P + + + ++ T + + G TI
Sbjct: 336 EAVLGMEVTPKILRNGKITLNLKISHNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETI 395
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILG 395
VL G+ + Q +P+L+ IP LG
Sbjct: 396 VLGGIFQQKNSQGVNKVPMLADIPWLG 422
>gi|42521752|ref|NP_967132.1| putative pilus assembly transmembrane protein [Bdellovibrio
bacteriovorus HD100]
gi|39574282|emb|CAE77786.1| putative pilus assembly transmembrane protein [Bdellovibrio
bacteriovorus HD100]
gi|51468906|emb|CAE47779.1| pilus assembling protein [Bdellovibrio bacteriovorus]
Length = 509
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 71/393 (18%), Positives = 150/393 (38%), Gaps = 35/393 (8%)
Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY----LFGKNVGQANVILIGH 104
+ I + K + +V ++ L+ D ++ + + R + L K++ + ++
Sbjct: 113 EFRIDVKKSKLDKVVREM-RALLGDIEGINIKIVNNRVVVDGQILLPKDLARIYNVVQ-Q 170
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
G+Q +L L + + R I + I V V++ ++L G + ++++RA ++
Sbjct: 171 FGEQASSLVTLSPLAQKKIAEFIARDINNPEIEVRAVNEKIILQGWANSDEEAKRAEIIA 230
Query: 165 ETFLSQSGRNQYANS--------SSKKVMNLLNI------AGEDQVTLKVTIAEVRRDIL 210
+T+L ++ V+NL+ I + L V E+ +D
Sbjct: 231 KTYLPDIVIEAAEEKGVIKKRRPANDGVINLIQIKEAPAKPPSKMIQLVVHYVELNKDYS 290
Query: 211 KQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
K FQ + G +S + D G +S + L+ ++
Sbjct: 291 KAFKFQFTPELGDNSQMTFQTGGDSPGGVISSITGTV-------SNLLPKLNWAKQHGHA 343
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--GR 327
R L +L G+ Y V G + G+V TP +L G
Sbjct: 344 RVLESTSLIVEDGKKGEIKQVTNQPYP-VIGKDGTQGTAFAEVGIVTAITPVLLGEKSGS 402
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ + + +VS +G P + +TV + + + GL+++ P
Sbjct: 403 VHMEMAFKVSSL-LGNTPSGAPITSANEMTSTVTVRDRQSAAVGGLIRNSTSTGYNR-PA 460
Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
K PI+ +L+ + F +++++ + TP +VK
Sbjct: 461 GQKNPII-SLYASKDFIKQQSQFVVFVTP-IVK 491
>gi|254302334|ref|ZP_04969692.1| possible outer bacterial membrane secretin family protein
[Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
gi|148322526|gb|EDK87776.1| possible outer bacterial membrane secretin family protein
[Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
Length = 515
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 92/241 (38%), Gaps = 21/241 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV + I ++ ++ +++GF + ++ G S ++
Sbjct: 267 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAIILGKAGLNGVGSTVNIVR 326
Query: 253 RFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---- 303
+F+ T ++ LE + + PTL SG+ F + + S
Sbjct: 327 QFNNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKSHRDDKKDR 386
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
+ + G+++ P + I L I E+S+ N ++
Sbjct: 387 YSEPVFKEAGLIMKVKPIIKDNDYIILEISLELSDFKFKRNVLNLKDINSGTYNSEGGSK 446
Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++
Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506
Query: 412 I 412
I
Sbjct: 507 I 507
>gi|170698153|ref|ZP_02889232.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria IOP40-10]
gi|170136918|gb|EDT05167.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria IOP40-10]
Length = 619
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 51/274 (18%), Positives = 106/274 (38%), Gaps = 17/274 (6%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G+ + + RAV +T +++ L+I+ + Q+ L + I ++++
Sbjct: 324 TGIAVSAETDVRAVAYPDTNSIVLTGPLDKVQDMTSLIHSLDIS-KRQIQLSLWIIDIKK 382
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
L Q+G S+ S SF LD F + AL++
Sbjct: 383 SCLDQLGVNWQGVFGSNRISGSFNGADNST------------TLDGPKFLVSVMALQQKG 430
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
++ P L A F + K + A S+ YG +++ P + G
Sbjct: 431 DATIVSRPVLLTQENMPAVFDNNQTFYAKLI--GERAVSLEHVTYGTMINVLPRLTDNGS 488
Query: 327 RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+ +++ E +A +P + DT +P ++++ G +DD ++ + I
Sbjct: 489 EVEMQVDVEDGNATDTNDAASPLPLVDRTEIDTVARVPREKSLLIGGNTRDDARRHRYRI 548
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P L+ +P++G LFR + ++ P ++
Sbjct: 549 PGLASLPLIGGLFRWRTESHDQVVRVFLIQPKVL 582
>gi|170699432|ref|ZP_02890477.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria IOP40-10]
gi|170135688|gb|EDT03971.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria IOP40-10]
Length = 680
Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 114/344 (33%), Gaps = 59/344 (17%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231
+ ++N L+ V + VTI ++ D L +G + G + +
Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS-----------------FETVLHALERATAIRTLAE 274
G ++ G S G F T ++AL + + ++
Sbjct: 385 NGAGNPPLTFGIGTSETGQTGTFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--------- 325
P + A+ A + Q + +S+ + G + TP ++
Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVS 502
Query: 326 ---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ + I + V G ++P + R T + G ++++AG D+++ K
Sbjct: 503 GNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNK 562
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----------PVAMRDLSRPDD 432
G+P LS IP++G LF+ + + E F TP +V PV D
Sbjct: 563 SGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTAAMYAPDGSPVNPGAGGPADP 622
Query: 433 H----YSVEDDAKAFFFNRVNKI---YGPKEASEVEGQNYKGAI 469
+ Y D+ A +GP + +
Sbjct: 623 NGASMYRPPDNDIAVPLTPAPLPGTKFGPPALPPPSSDSASRPV 666
>gi|189424531|ref|YP_001951708.1| type II and III secretion system protein [Geobacter lovleyi SZ]
gi|189420790|gb|ACD95188.1| type II and III secretion system protein [Geobacter lovleyi SZ]
Length = 792
Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats.
Identities = 69/454 (15%), Positives = 140/454 (30%), Gaps = 88/454 (19%)
Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD----VLVSDPTK---- 76
L + + A + D+++ K +++ N + ++ + V DP
Sbjct: 165 ALQRVAGSPATSLAGRDLQLTSVKPLTLKANGTRLKELFSTITRHSGINFVFDPDFKDQP 224
Query: 77 ----------------------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114
D V + T+ ++ ++ + L
Sbjct: 225 ATLTLENSGFRQALDLLAALHRIDYAVINESTVLIYPQSAEKTK-----QYQDMQLRTFH 279
Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
L D +R + + + ++ +V+ ++ +E +
Sbjct: 280 LNHLDAKKAANLIRTMLQVRRLYINEDANALVVRDTSDVTDVIEKILEAHDL-------- 331
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
E +V L V + E+ +G S G
Sbjct: 332 -----------------PEAEVVLDVEVIEISDKNAHNVGLLLSNYDVQLGAFSPSNELL 374
Query: 235 GGKFVSEGG-----------------DFSVKGVLDRFSF-ETVLHALERATAIRTLAEPT 276
FS+ + + + L+ P
Sbjct: 375 ATTLKDTTSTTSTTVTTDATIKNLVKAFSINSFGGYVTVPNAQYNFGKTLANGEVLSNPK 434
Query: 277 LTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ + + A F G + + +T +V D GV ++ PT+ + +++
Sbjct: 435 IRVKNKEKAKFNVGTRVPITTTTMATTGTTSQVNVQYVDVGVKVNAEPTIQLNNEVSIKL 494
Query: 333 QTEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
EVS + G + + R DT + L G T V+ GL+ K+ I
Sbjct: 495 GLEVSSIISRETVGGKDSATTVVTIGTRNLDTVLSLKDGETSVIGGLISHSNSDSKQKIF 554
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
LL IP++G L NS+ + ++TE+ +A TP LV+
Sbjct: 555 LLGDIPLIGPLLSNSKTDNDKTELILAITPRLVR 588
>gi|320656547|gb|EFX24443.1| type III secretion system outer membrane pore InvG [Escherichia
coli O55:H7 str. 3256-97 TW 07815]
Length = 567
Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats.
Identities = 46/271 (16%), Positives = 86/271 (31%), Gaps = 18/271 (6%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
++ ++ + + +K++ L+I + L + I ++ + L+
Sbjct: 264 APETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDIDKTDLE 322
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
Q+G S G + + LD F + AL +
Sbjct: 323 QLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQKRRAAV 371
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+A P + A F + K V T + YG ++ P + +I L
Sbjct: 372 VARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARNQIELL 429
Query: 332 IQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ E N D+P T +P G ++++ G +D IP+L
Sbjct: 430 LNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKIPILG 489
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP +G LF N P +
Sbjct: 490 SIPFIGKLFGYEGTNANNIVRVFLIEPREID 520
>gi|296328369|ref|ZP_06870896.1| general secretion pathway protein D [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154548|gb|EFG95338.1| general secretion pathway protein D [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 515
Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
QV + I ++ ++ +++GF + ++ G V +
Sbjct: 267 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 326
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
+ T ++ LE + + PTL SG+ F + + +
Sbjct: 327 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
+ + G+++ P + I L I E+S+ N ++
Sbjct: 387 YSEPVFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 446
Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++
Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506
Query: 412 I 412
I
Sbjct: 507 I 507
>gi|134294019|ref|YP_001117755.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia vietnamiensis G4]
gi|134137176|gb|ABO58290.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia vietnamiensis G4]
Length = 679
Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats.
Identities = 58/354 (16%), Positives = 114/354 (32%), Gaps = 73/354 (20%)
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVTL 198
+ A F + G + + +N + + V +
Sbjct: 282 ADSAAGGISPFSAGGGGDALPQIVADPAINAVIVRDLPENMYRYQSLIDQLDERPRIVEI 341
Query: 199 KVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVK 248
VTI ++ D L +G + G + + G ++ G S
Sbjct: 342 NVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQYNGAGNPPLTFGIGASET 401
Query: 249 GVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G F T ++AL + + ++P + A+ A +
Sbjct: 402 GQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLT 461
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEP 339
Q + +S+ + G + TP ++ + + I +
Sbjct: 462 QFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDEAIRHAAAVSGTPQSVMMSIDIQDGNI 519
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
V G ++P + R T + G ++++AG D+++ K G+P LS IP++G LF+
Sbjct: 520 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 579
Query: 400 NSRFNREETEIFIAATPFLVK----------PVAMRDLSRPDDH----YSVEDD 439
+ + E F TP +V PV + D + Y D+
Sbjct: 580 YTDKSGNHMERFYLLTPRVVTNASMYAPDGSPVNPGADAPADPNAMSMYRPPDN 633
>gi|115358977|ref|YP_776115.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia ambifaria AMMD]
gi|115284265|gb|ABI89781.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria AMMD]
Length = 681
Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats.
Identities = 58/354 (16%), Positives = 114/354 (32%), Gaps = 73/354 (20%)
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVTL 198
+ A F + G + + +N + + V +
Sbjct: 282 ADSAAGGFSPFSNAGGGDTLPQIVADPAINAVIVRDLPENMYRYQSLINQLDERPRIVEI 341
Query: 199 KVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVK 248
VTI ++ D L +G + G + + G ++ G S
Sbjct: 342 NVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQYNGAGNPPLTFGIGTSET 401
Query: 249 GVLDRFS-----------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G F T ++AL + + ++P + A+ A +
Sbjct: 402 GQTGAFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLT 461
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEP 339
Q + +S+ + G + TP ++ + + I +
Sbjct: 462 QFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQDGNI 519
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
V G ++P + R T + G ++++AG D+++ K G+P LS IP++G LF+
Sbjct: 520 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 579
Query: 400 NSRFNREETEIFIAATPFLVK----------PVAMRDLSRPDDH----YSVEDD 439
+ + E F TP +V PV + D + Y D+
Sbjct: 580 YTDKSGNHMERFYLLTPRVVTTAAMYAPDGSPVNPGAGAPADPNGASMYRPPDN 633
>gi|237743199|ref|ZP_04573680.1| general secretion pathway protein D [Fusobacterium sp. 7_1]
gi|229433495|gb|EEO43707.1| general secretion pathway protein D [Fusobacterium sp. 7_1]
Length = 423
Score = 130 bits (326), Expect = 7e-28, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 21/241 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
QV + I ++ ++ +++GF + ++ G V +
Sbjct: 175 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 234
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
+ ++ LE + + PTL SG+ F + + +
Sbjct: 235 QFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 294
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
+ + G+++ P + I L I E+S+ N ++
Sbjct: 295 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 354
Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++
Sbjct: 355 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 414
Query: 412 I 412
I
Sbjct: 415 I 415
>gi|237741044|ref|ZP_04571525.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13]
gi|229431088|gb|EEO41300.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13]
Length = 423
Score = 130 bits (326), Expect = 7e-28, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 21/241 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
QV + I ++ ++ +++GF + ++ G V +
Sbjct: 175 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 234
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
+ ++ LE + + PTL SG+ F + + +
Sbjct: 235 QFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 294
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
+ + G+++ P + I L I E+S+ N ++
Sbjct: 295 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 354
Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++
Sbjct: 355 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 414
Query: 412 I 412
I
Sbjct: 415 I 415
>gi|38639336|gb|AAR25802.1| BcscC [Burkholderia multivorans E243]
Length = 504
Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats.
Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 43/314 (13%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSE 241
V + VTI ++ D L +G + G++ + G ++
Sbjct: 159 RPRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTF 218
Query: 242 GGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQS 284
G S G F T ++AL + + ++P + A+
Sbjct: 219 GIGASESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTE 278
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRI 332
A + Q + +S+ + G + TP ++ + + I
Sbjct: 279 AILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGRPESVMMSI 336
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ V G ++P + R T + G ++++AG D+++ K G+P LS IP
Sbjct: 337 DIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIP 396
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNK 450
++G LF+ + + E F TP +V + D S + D R
Sbjct: 397 LIGNLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPD 456
Query: 451 IYGPKEASEVEGQN 464
+
Sbjct: 457 NDIAVPLTPRPLPG 470
>gi|260495319|ref|ZP_05815446.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33]
gi|260197097|gb|EEW94617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33]
Length = 515
Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
QV + I ++ ++ +++GF + ++ G V +
Sbjct: 267 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIVR 326
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
+ T ++ LE + + PTL SG+ F + + +
Sbjct: 327 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
+ + G+++ P + I L I E+S+ N ++
Sbjct: 387 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 446
Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++
Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506
Query: 412 I 412
I
Sbjct: 507 I 507
>gi|291297113|ref|YP_003508511.1| type II and III secretion system protein [Meiothermus ruber DSM
1279]
gi|290472072|gb|ADD29491.1| type II and III secretion system protein [Meiothermus ruber DSM
1279]
Length = 509
Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats.
Identities = 59/341 (17%), Positives = 116/341 (34%), Gaps = 40/341 (11%)
Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
I + R +++ A S+ R ++D + G T Q + Q+
Sbjct: 180 IDVPRATTATIPVVQKSFALSHARATELADVL---GKAITAQAQGQTTPAQGQGQGQAQP 236
Query: 174 NQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGF 215
++ N L + G QV L++ + V ++++ +G
Sbjct: 237 APQVTVVAEPRTNTLIVTGTAEQIALAERLIPNLDRPVQQVQLQIRVQAVSGEVIRNLGI 296
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ + + + F + L + VL ALE+ R L++
Sbjct: 297 KWETVSGGNLIASFLSTGLNLIFDA-------TRSLASLNIRAVLDALEKQQLSRRLSDA 349
Query: 276 TLTAISGQSASF-----------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ A + +V DYG+++ P + +
Sbjct: 350 NVLVEDNYGADTSDLRATGAKGAEIKVGGRLLIPITIGDQITVREFDYGLLVRVRPQIST 409
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
G I L + T+ + + + + + G T+VL GL++ +
Sbjct: 410 DGNILLEVFTQ-TGGDPADGPAGSIRIPQQSTLSKLRIRDGQTVVLGGLIQKVTDTSETK 468
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
IPLL IP+LG LF+ + ++ E+ + T +VK A R
Sbjct: 469 IPLLGDIPLLGELFKQRTSSIKDDELIVIITGNIVKDSAQR 509
>gi|256027610|ref|ZP_05441444.1| general secretion pathway protein D [Fusobacterium sp. D11]
Length = 515
Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
QV + I ++ ++ +++GF + ++ G V +
Sbjct: 267 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIVR 326
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
+ T ++ LE + + PTL SG+ F + + +
Sbjct: 327 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
+ + G+++ P + I L I E+S+ N ++
Sbjct: 387 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 446
Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++
Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506
Query: 412 I 412
I
Sbjct: 507 I 507
>gi|167743212|ref|ZP_02415986.1| Type III secretion system protein [Burkholderia pseudomallei 14]
Length = 309
Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 7 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 66 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 114
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 172
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 233 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 292
>gi|324014333|gb|EGB83552.1| bacterial type II and III secretion system protein [Escherichia
coli MS 60-1]
Length = 193
Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats.
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 8/194 (4%)
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ G+ D L A++ + + ++ P + SGQ+ + G +
Sbjct: 1 ALGSALSTAGGSFGIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPF 60
Query: 296 KTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
T + ++ HD GV L TP V+ G++ L I T A D+
Sbjct: 61 ITGKVTGESAGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDI 120
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
R+ TTV++ G T++L GL+ + +P++SKIP++G +F + + E+
Sbjct: 121 -ITNQRQIQTTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNEQR 179
Query: 409 EIFIAATPFLVKPV 422
++I T +++P+
Sbjct: 180 IMYILLTAHIIRPL 193
>gi|171915470|ref|ZP_02930940.1| type II and III secretion system protein:NolW-like
[Verrucomicrobium spinosum DSM 4136]
Length = 896
Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats.
Identities = 50/253 (19%), Positives = 94/253 (37%), Gaps = 24/253 (9%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
Q+ L I E G T S G A V G+
Sbjct: 516 KRPRQILLTAVIGEFTLGNDFSFGVDWLHTLESVGKDGLIAGALNTSGVEPVDFTKFGGI 575
Query: 251 LD-------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ----- 292
D L LE+ L +PT+TA++ + A+ G
Sbjct: 576 EDFAAPQGLAVYGHIGKHLNVFLRTLEQNKRFHVLQKPTVTALNHEEANIFIGQDLAIAG 635
Query: 293 ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAG 346
TV+ ++ A++ + L TP + + + L + ++ ++
Sbjct: 636 QTLTTGGTTVNGASVASTTDYVKVRLELRITPHIFANDEVRLDFEQTNNDVSGFTEISGN 695
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+P+ V+ T+ +P+ T++L GL+ + + K G+P L ++P+L LF N+ ++E
Sbjct: 696 RVPNLSVQGMRNTIIVPNRSTVLLGGLITERDSKNKNGLPFLVRVPVLKHLFGNTSNSKE 755
Query: 407 ETEIFIAATPFLV 419
E+ I P ++
Sbjct: 756 RRELMIFVQPQIL 768
>gi|157364734|ref|YP_001471501.1| type II and III secretion system protein [Thermotoga lettingae TMO]
gi|157315338|gb|ABV34437.1| type II and III secretion system protein [Thermotoga lettingae TMO]
Length = 385
Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats.
Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 5/227 (2%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV + V ++EV +D L +IG G + G ++ + D+ G SV+ +
Sbjct: 164 PRQVKISVVVSEVSKDNLGEIGLD--QIGYTFGANQQYNEDWTAVLGLISGVLSVQTDVF 221
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
L ALE+ + A+P + + A G + + T+ T
Sbjct: 222 GT-IVARLRALEQDQKAKIKADPWIIVQENKPARLFVGQREIIILQPEEGTTTTETVDVG 280
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
V + T V+ + + + +S + S + + TT+ + SG T+V++G
Sbjct: 281 -VGIDITARVVGKNELEINVAPNISHFTTAQTTSSL-STKRSELSTTLRIQSGQTVVISG 338
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L ++ GIPLL IP+L LF ++ + E+ I + ++
Sbjct: 339 LTVENSSDGYTGIPLLGNIPLLRYLFGVKSDSQSQREVIIFLSAEIL 385
>gi|167840181|ref|ZP_02466865.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia thailandensis MSMB43]
Length = 579
Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats.
Identities = 56/284 (19%), Positives = 107/284 (37%), Gaps = 21/284 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 276 GVAVPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 334
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F GG + LD F + AL +
Sbjct: 335 RLDQLGIDWQGALNAPGIGVGFNNRGGGNVTT----------LDGTKFLASVAALSQTGD 384
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
++ P + A+F S K + A + YG +++ P + +
Sbjct: 385 ATVISRPIVLTQENVPATFDSNQTFYAKLI--GERAVQLDHVTYGTLVNVLPRLTRDASQ 442
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I V+ MP + +T +P ++++ G +DD+ +
Sbjct: 443 VEMIVDIEDGNTDGATSDGQIVVDNNAMPLVNRTEINTVARVPREMSLLIGGNTRDDVTR 502
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
IP L+ IP++G LFR E+ P L++ A
Sbjct: 503 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 546
>gi|83717183|ref|YP_439025.1| type III secretion system protein BsaO [Burkholderia thailandensis
E264]
gi|83651008|gb|ABC35072.1| type III secretion system protein BsaO [Burkholderia thailandensis
E264]
Length = 619
Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats.
Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 317 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 375
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 376 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 424
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
++ P + A+F S K + T + YG +++ P + +
Sbjct: 425 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 482
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 483 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 542
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ +P++G LFR E+ P L++ A +P + D+A
Sbjct: 543 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 602
>gi|34762860|ref|ZP_00143844.1| General secretion pathway protein D [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887468|gb|EAA24554.1| General secretion pathway protein D [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 423
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 21/241 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
QV + I ++ ++ +++GF + ++ G V +
Sbjct: 175 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGLNGVGSTVNIVR 234
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
+ ++ LE + + PTL SG+ F + + +
Sbjct: 235 QFHNKSDVLSVGINLLEATNDLVVSSVPTLLIASGEEGEFKVTEEVVVGIKTHREDKKDR 294
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
+ + G+++ P + I L I E+S+ N ++
Sbjct: 295 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 354
Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++
Sbjct: 355 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 414
Query: 412 I 412
I
Sbjct: 415 I 415
>gi|167923347|ref|ZP_02510438.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei BCC215]
Length = 353
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 51 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 109
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 110 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 158
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 159 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 216
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 217 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 276
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 277 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 336
>gi|46447109|ref|YP_008474.1| putative component D of type II secretion pathway [Candidatus
Protochlamydia amoebophila UWE25]
gi|46400750|emb|CAF24199.1| putative component D of type II secretion pathway [Candidatus
Protochlamydia amoebophila UWE25]
Length = 953
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/268 (17%), Positives = 83/268 (30%), Gaps = 41/268 (15%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK----- 248
QV +++ I + G + G + ++
Sbjct: 634 RQVFIEMLILDTTITDSLTYGVDWGSRFGGGNTAGGQNFLGTGSGLVGSLTNAITNNPIV 693
Query: 249 --------------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
G L + ++ A+ T I + P + +A
Sbjct: 694 DTVLSGDGYTAGIIGRHLTHGGLHFSTIGALVKAIHSDTKINIIMNPKIVTEDNNTAEVF 753
Query: 289 SGGQHLYKTVSSSTGATSV-----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
G YKT S + SV D G L TP + + G I L I EV+
Sbjct: 754 VGSTDRYKTQSIANDIGSVITNNFQFIDVGTTLRVTPLIGNNGIITLDIIQEVTNDGGNA 813
Query: 344 N-----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
N +P + T V +P G ++L+G+++ + IP L +P
Sbjct: 814 NPNVGNNPSVVDVNLVPVLSKSRTVTKVHVPDGFFVILSGMIQSTESRSVNRIPCLGGLP 873
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
++G + + + + I P +V
Sbjct: 874 LIGGISKQKSNRDSKRNLMIFIRPLIVD 901
>gi|307247528|ref|ZP_07529573.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306856031|gb|EFM88189.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
Length = 204
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 5/180 (2%)
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
+ LAEP ++ +SG++A GG+ + G SV ++G+ L V R
Sbjct: 4 NGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKSDR 62
Query: 328 IGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
I L + VS + +P + R++ +T E+ +G + +++GLL + + +
Sbjct: 63 IRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKV 122
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + FF
Sbjct: 123 PVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFFN 180
>gi|167820388|ref|ZP_02452068.1| Type III secretion system protein [Burkholderia pseudomallei 91]
Length = 324
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 22 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 80
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 81 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 129
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 130 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 187
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 188 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 247
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 248 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 307
>gi|76817430|ref|YP_335745.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia pseudomallei 1710b]
gi|76581903|gb|ABA51377.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1710b]
Length = 339
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 37 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 95
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 96 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 144
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 145 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 202
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 203 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 262
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 263 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 322
>gi|19705376|ref|NP_602871.1| general secretion pathway protein D [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19713363|gb|AAL94170.1| General secretion pathway protein D [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 402
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
QV + I ++ ++ +++GF + ++ G V +
Sbjct: 154 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 213
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
+ T ++ LE + + PTL SG+ F + + +
Sbjct: 214 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 273
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
+ + G+++ P + I L I E+S+ N ++
Sbjct: 274 YSEPVFKEAGLIMKVKPIIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 333
Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++
Sbjct: 334 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 393
Query: 412 I 412
I
Sbjct: 394 I 394
>gi|167915501|ref|ZP_02502592.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei 112]
Length = 348
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 46 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 104
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 105 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 153
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 154 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 211
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 212 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 271
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 272 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 331
>gi|167908440|ref|ZP_02495645.1| Type III secretion system protein [Burkholderia pseudomallei NCTC
13177]
Length = 360
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 58 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 116
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 117 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 165
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 166 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 223
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 224 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 283
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 284 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 343
>gi|167898820|ref|ZP_02486221.1| Type III secretion system protein [Burkholderia pseudomallei 7894]
Length = 325
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 23 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 81
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 82 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 130
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 131 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 188
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 189 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 248
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 249 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 308
>gi|37522007|ref|NP_925384.1| hypothetical protein glr2438 [Gloeobacter violaceus PCC 7421]
gi|35213006|dbj|BAC90379.1| glr2438 [Gloeobacter violaceus PCC 7421]
Length = 493
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 123/366 (33%), Gaps = 61/366 (16%)
Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149
G VG N+ G + L L + V+ ++++V G
Sbjct: 162 LGAQVGSTNL---GSTQPGAATTNPDPAATSGPLRGELF-------VTVDARTNSLVAVG 211
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
RA+++++ L+ L++ QV + V + +V +
Sbjct: 212 SP-------RALQIAQVQLA-----------------QLDVRQR-QVMIDVKLVDVNLNN 246
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV---------- 259
+ +GF+ + + A G + G + F T+
Sbjct: 247 VSDLGFRLGGSAGNFQLGTVGGAADLGASYPAAVGLTGGGPGNTLIFNTLGALASAMALR 306
Query: 260 LHALERATAIRTLAEPTLTAISG-----------QSASFTSGGQHLYKTVSSSTGATSVT 308
L + + R LA P L SG + G + + T++
Sbjct: 307 LDTAIQEGSARVLASPQLLVASGAGFSKPTAARVEITDDVVVGATITTDRETGQSTTTIK 366
Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKAD-TTVELP 363
GV L V G + + ++ +VS + + R D + L
Sbjct: 367 VDKVGVSLEIAVYQVDDNGFVDVSLKPQVSSINDIQRDAAGNLVTLLTRRNLDIQRLRLR 426
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
G T V+ G++++ +QL + +PLL +P+LGALFR E E+ + TP ++K
Sbjct: 427 DGETFVIGGVIREIDRQLVQKMPLLGDLPVLGALFRFQSNQHERREVALMVTPHILKESV 486
Query: 424 MRDLSR 429
Sbjct: 487 HEAAPL 492
>gi|182414666|ref|YP_001819732.1| type II and III secretion system protein [Opitutus terrae PB90-1]
gi|177841880|gb|ACB76132.1| type II and III secretion system protein [Opitutus terrae PB90-1]
Length = 895
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 46/260 (17%)
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
QIG I ++ G ++ ++ GV+ F V+ AL +
Sbjct: 627 TSSAQIGIDLPIVNNAPRIPGGADLALGAGPLA-----TISGVIGEFDVNAVVRALSQQQ 681
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------------------GAT 305
L+ P +T +SG A+ T + Y T
Sbjct: 682 GTDLLSAPKVTVLSGNPATITVAQEMRYPQSFGQTQSQVGTGNASGGGSAGVAITAGTPQ 741
Query: 306 SVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGD----------------- 347
T + GV L TPTV I L + +V+E V G
Sbjct: 742 EFTKRNIGVELRVTPTVEEDDYSISLDLNPKVTEFDGFVEYGGPSIAISGSTTVTVPSGF 801
Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
P + VR T V + G T+V+ GL +++++++ + +P+L +P++G FR+ + +
Sbjct: 802 YQPIFSVRDIATKVTIWDGATLVMGGLTREEVKKVNDKVPILGDLPLIGRAFRSKGESAQ 861
Query: 407 ETEIFIAATPFLVKPVAMRD 426
+ + I T LV P
Sbjct: 862 KRNLLIFVTANLVNPGGAPK 881
>gi|167828759|ref|ZP_02460230.1| Type III secretion system protein [Burkholderia pseudomallei 9]
Length = 326
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 24 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 82
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 83 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 131
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 132 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 189
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 190 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 249
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 250 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 309
>gi|167724236|ref|ZP_02407472.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei DM98]
Length = 351
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 49 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 107
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 108 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 156
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 157 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 214
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 215 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 274
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 275 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 334
>gi|167850214|ref|ZP_02475722.1| Type III secretion system protein [Burkholderia pseudomallei B7210]
Length = 333
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 31 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 89
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 90 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 138
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 139 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 196
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 197 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 256
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 257 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 316
>gi|289765568|ref|ZP_06524946.1| general secretion pathway protein D [Fusobacterium sp. D11]
gi|289717123|gb|EFD81135.1| general secretion pathway protein D [Fusobacterium sp. D11]
Length = 423
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
QV + I ++ ++ +++GF + ++ G V +
Sbjct: 175 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIVR 234
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
+ T ++ LE + + PTL SG+ F + + +
Sbjct: 235 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 294
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
+ + G+++ P + I L I E+S+ N ++
Sbjct: 295 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 354
Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++
Sbjct: 355 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 414
Query: 412 I 412
I
Sbjct: 415 I 415
>gi|257487975|ref|ZP_05642016.1| type III secretion component, putative [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 243
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 13/231 (5%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I +
Sbjct: 23 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 82
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
+G++ L + + A + L+ S R+ V+ G V+ + ++ L
Sbjct: 83 EGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + +N AG QV ++V AEV R L + G + ++
Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192
Query: 225 GPSKSFAA---DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
S S + + +L AL+ + L
Sbjct: 193 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVL 243
>gi|254250197|ref|ZP_04943517.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia
PC184]
gi|124876698|gb|EAY66688.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia
PC184]
Length = 463
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 51/277 (18%), Positives = 102/277 (36%), Gaps = 42/277 (15%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231
+ ++N L+ V + VTI ++ D L +G + G ++ +
Sbjct: 78 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQY 136
Query: 232 ADFGGKFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAE 274
G ++ G S G F T ++AL + + ++
Sbjct: 137 NGVGNPPLTFGIGTSETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 196
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--------- 325
P + A+ A + Q + +S+ + G + TP ++
Sbjct: 197 PKVLALDNTEAILENLTQFYVQVPGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVS 254
Query: 326 ---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ + I + V G ++P + R T + G ++++AG D+++ K
Sbjct: 255 GNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNK 314
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G+P LS IP++G LF+ + + E F TP +V
Sbjct: 315 SGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVV 351
>gi|257142133|ref|ZP_05590395.1| type III secretion system protein BsaO [Burkholderia thailandensis
E264]
Length = 600
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 298 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 356
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 357 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 405
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
++ P + A+F S K + T + YG +++ P + +
Sbjct: 406 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 463
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 464 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 523
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ +P++G LFR E+ P L++ A +P + D+A
Sbjct: 524 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 583
>gi|207724596|ref|YP_002254993.1| hrcc (hrpa) protein (partial sequence c terminus) [Ralstonia
solanacearum MolK2]
gi|206589818|emb|CAQ36779.1| probable hrcc (hrpa) protein (partial sequence c terminus)
[Ralstonia solanacearum MolK2]
Length = 303
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 85/245 (34%), Gaps = 23/245 (9%)
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241
+ +I ++ L+Q+G + S A+
Sbjct: 61 ISASIIDITETALEQLGVDWRLHNSRFDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 120
Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
GG S + AL++ R A P + + A +
Sbjct: 121 TPAGGVLSAVIGGGSRYLMARISALQQTNQARITASPKVATLDNTEAVMDNRQNFYVPVA 180
Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
+ + GV L P V+ G + +R+ + + I G++P +
Sbjct: 181 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPVTSQSEI 238
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
DT + G ++++AG D + + IP LSKIP++GALFR + + + TP
Sbjct: 239 DTQALINEGESLLIAGYSVDQQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVTP 298
Query: 417 FLVKP 421
++ P
Sbjct: 299 RVITP 303
>gi|149917610|ref|ZP_01906107.1| type II and III secretion system protein [Plesiocystis pacifica
SIR-1]
gi|149821673|gb|EDM81071.1| type II and III secretion system protein [Plesiocystis pacifica
SIR-1]
Length = 777
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/306 (17%), Positives = 105/306 (34%), Gaps = 43/306 (14%)
Query: 148 HGMVR-TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G V+ T ++ R++ + + + +++ L+ QV L++ + E
Sbjct: 375 SGDVKITADEATRSLVIIASAADYKSL--------EPIIDELD-RDRKQVYLEIYLLEAS 425
Query: 207 --RDILKQIGFQHSITGSS-------------------SGPSKSFAADFGGKFVSE---G 242
R + G + S + + G + G
Sbjct: 426 VGRSLTTGAGAHFAGQFGQGEQQSVGLISSSPSPDVSSILLSPAALSGLAGGLIGPQLIG 485
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----- 297
+ D +F V+ AL+ + +AEP + + A G +
Sbjct: 486 TGAQLGLERDIPAFGVVIQALQSNDDVNIVAEPHIYTADNKEAQIEVGRKVPTPGALQFG 545
Query: 298 ----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
+S T S+ D + + TP V + L I+ E + V + + +
Sbjct: 546 GAGGGTSLTPLQSINREDVTLDIKVTPHVKDETSLTLDIELEDRDVVDQDPVLGVTTTKR 605
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
R V +VL GL+++ + + +P L IPILG LF+ +E+ + I
Sbjct: 606 RIKLENVLARDDLPVVLGGLMRERELENTQQVPGLGSIPILGWLFKRRVKQKEKINLLIV 665
Query: 414 ATPFLV 419
P +V
Sbjct: 666 LIPHVV 671
>gi|206563896|ref|YP_002234659.1| type III secretion system protein [Burkholderia cenocepacia J2315]
gi|18092668|gb|AAL59397.1| BcscC [Burkholderia cenocepacia]
gi|28394249|gb|AAO31724.1| BcscC [Burkholderia cenocepacia]
gi|198039936|emb|CAR55914.1| type III secretion system protein [Burkholderia cenocepacia J2315]
Length = 681
Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats.
Identities = 52/314 (16%), Positives = 106/314 (33%), Gaps = 59/314 (18%)
Query: 167 FLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVTLKVTIAEVRRD 208
F + G + + +N + + V + VTI ++ D
Sbjct: 293 FSNNGGGDTLPQIVADPAINAVIVRDLPENMYRYQSLIGQLDERPRIVEINVTIIDINED 352
Query: 209 ILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---- 254
L +G + G ++ + G ++ G S G F
Sbjct: 353 SLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQYNGAGNPPLTFGIGTSETGQTGAFMPTG 412
Query: 255 -------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
T ++AL + + ++P + A+ A + Q +
Sbjct: 413 IALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLTQFYVQVPGYQ 472
Query: 302 TGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEPVIGVNAGDMP 349
+S+ + G + TP ++ + + I + V G ++P
Sbjct: 473 D--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQDGNIVPGQAVSNVP 530
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ R T + G ++++AG D+++ K G+P LS IP++G LF+ + + E
Sbjct: 531 VIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFKYTDKSGNHME 590
Query: 410 IFIAATPFLVKPVA 423
F TP +V +
Sbjct: 591 RFYLLTPRVVTSAS 604
>gi|107025868|ref|YP_623379.1| Type III secretion system outer membrane pore YscC/HrcC
[Burkholderia cenocepacia AU 1054]
gi|116692948|ref|YP_838481.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia cenocepacia HI2424]
gi|105895242|gb|ABF78406.1| Type III secretion system outer membrane pore YscC/HrcC
[Burkholderia cenocepacia AU 1054]
gi|116650948|gb|ABK11588.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia cenocepacia HI2424]
Length = 681
Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats.
Identities = 51/277 (18%), Positives = 102/277 (36%), Gaps = 42/277 (15%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231
+ ++N L+ V + VTI ++ D L +G + G ++ +
Sbjct: 327 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQY 385
Query: 232 ADFGGKFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAE 274
G ++ G S G F T ++AL + + ++
Sbjct: 386 NGVGNPPLTFGIGTSETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 445
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--------- 325
P + A+ A + Q + +S+ + G + TP ++
Sbjct: 446 PKVLALDNTEAILENLTQFYVQVPGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVS 503
Query: 326 ---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ + I + V G ++P + R T + G ++++AG D+++ K
Sbjct: 504 GNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNK 563
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G+P LS IP++G LF+ + + E F TP +V
Sbjct: 564 SGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVV 600
>gi|297622120|ref|YP_003710257.1| putative general secretion pathway protein D [Waddlia chondrophila
WSU 86-1044]
gi|297377421|gb|ADI39251.1| putative general secretion pathway protein D [Waddlia chondrophila
WSU 86-1044]
Length = 865
Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats.
Identities = 48/271 (17%), Positives = 95/271 (35%), Gaps = 34/271 (12%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--- 238
K+++ L++ + V ++V + E G GS++ + + G
Sbjct: 530 KEIIAKLDVP-KKMVQIEVLLFERILQRDISYGLNLLKIGSAASQKHRTSTVWAGGLDQC 588
Query: 239 --VSEGGDFSVKGVL-------------DRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+++ + G +F+ L + A P++ AI+
Sbjct: 589 EAIADASTIATCGRGVIDFFISRKKTDSGIPAFDLAYKFLMSQDNVYLTASPSVVAINQT 648
Query: 284 SASFTSGGQHLYKTVSSSTGATSV------TTHDYGVVLHFTP---------TVLSPGRI 328
A + + ++ T + +V T YG+ + TP I
Sbjct: 649 EAVISIQDERSILVGTNITDSAAVPAQNAFTRAQYGITIRVTPIIHYSEDTDFGDPENYI 708
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
L + P R+ V +P G +++ GL + + + IP L
Sbjct: 709 TLNSEITFDTIPPSQQNSSQPQVNRRQIINQVNIPDGQAVIIGGLQRKQGSDMCDKIPFL 768
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
++P LG LF ++ EETE+ I TP ++
Sbjct: 769 GELPGLGKLFSTTQLTDEETELVIFMTPKII 799
>gi|170737787|ref|YP_001779047.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia cenocepacia MC0-3]
gi|169819975|gb|ACA94557.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia cenocepacia MC0-3]
Length = 681
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 52/310 (16%), Positives = 105/310 (33%), Gaps = 59/310 (19%)
Query: 167 FLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVTLKVTIAEVRRD 208
F + G + + +N + + V + VTI ++ D
Sbjct: 293 FANNGGGDTLPQIVADPAINAVIVRDLPENMYRYQSLISQLDERPRIVEINVTIIDINED 352
Query: 209 ILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---- 254
L +G + G ++ + G ++ G S G F
Sbjct: 353 SLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQYNGVGNPPLTFGIGTSETGQTGTFMPTG 412
Query: 255 -------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
T ++AL + + ++P + A+ A + Q +
Sbjct: 413 IALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLTQFYVQVPGYQ 472
Query: 302 TGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEPVIGVNAGDMP 349
+S+ + G + TP ++ + + I + V G ++P
Sbjct: 473 D--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQDGNIVPGQAVSNVP 530
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ R T + G ++++AG D+++ K G+P LS IP++G LF+ + + E
Sbjct: 531 VIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNKSGVPWLSDIPLIGNLFKYTDKSGNHME 590
Query: 410 IFIAATPFLV 419
F TP +V
Sbjct: 591 RFYLLTPRVV 600
>gi|282890888|ref|ZP_06299405.1| putative type III secretion protein SctC [Parachlamydia
acanthamoebae str. Hall's coccus]
gi|281499242|gb|EFB41544.1| putative type III secretion protein SctC [Parachlamydia
acanthamoebae str. Hall's coccus]
Length = 955
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/274 (18%), Positives = 96/274 (35%), Gaps = 47/274 (17%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSS----------------------------SG 225
QV +++ I + D G +G
Sbjct: 623 RQVFIEMLILDSSLDDSLNYGVNWGTRFGGGDTAGSQAFLSSASTLPGALDTTGIANTNG 682
Query: 226 PSKSFAADFGGKFVSEGGDFSVK--------GVLDRFSFETVLHALERATAIRTLAEPTL 277
S ++ +++ G L SF ++ A+ T+ + P +
Sbjct: 683 ISTGQILTPNANTLARTPGYNLGIVGQTVSVGNLTFQSFGALVKAIHDKTSTNIVMNPKI 742
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
A +A G Y+T S S T+ + G L TP + + + L I
Sbjct: 743 LAEDNVTAEIFVGENTQYQTQSISNDQGSVITTNFEYRNIGTTLKITPFLGNNDIVTLEI 802
Query: 333 QTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
+ EVS NA + P+ R+ + T V +P +V++G+++D + + +P
Sbjct: 803 RQEVSSVASTTNAQALNNITPGPTTRLSRTTTRVHVPDKYFLVISGMVQDQETRRRVSVP 862
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L +P++GA F + E+ + I P ++
Sbjct: 863 CLGGLPVIGAAFSDKNVTDEKRNLMIFIRPEIID 896
>gi|262039342|ref|ZP_06012655.1| general secretion pathway protein D [Leptotrichia goodfellowii
F0264]
gi|261746604|gb|EEY34130.1| general secretion pathway protein D [Leptotrichia goodfellowii
F0264]
Length = 385
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 103/236 (43%), Gaps = 12/236 (5%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADFGGKFVSEGGDFSVKG 249
+DQ+ +K TI + ++ +++G +I ++ P+ + A F ++ G F+ G
Sbjct: 149 RPKDQIIIKGTIIDTSSNLFEKLGVDWNINSNNPEPAKSNLVAKFLNGEITIGSIFASGG 208
Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT- 308
F + L I+ A PTL + + + L ++ T T
Sbjct: 209 KFLGIDF----NLLRENGDIKIEAMPTLLIMEDEEGELKVTEEVLVGEKKTTKNNTDYTE 264
Query: 309 --THDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362
+ G+V P + +I L+I TE+S + N + + + + T + L
Sbjct: 265 PIFSEAGIVFKILPEIRKINGEKKILLKIDTEISNFKLTSNYSSGSGAKQKNQTKTIITL 324
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+GG+ + GL ++ ++ + +P S IPI+G LF+ R N+E +I+I +
Sbjct: 325 NNGGSTFIGGLKQNVTKETIKKVPFFSSIPIIGPLFKYKRNNKEVRDIYIEIEAVI 380
>gi|167573168|ref|ZP_02366042.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia oklahomensis C6786]
Length = 577
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 41/269 (15%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---------------------------- 223
+ ++ I E+ D+L+QIG S
Sbjct: 309 RPRLIEIQAHIMEIDDDLLRQIGVDWRAHNSHGDIQTGMGAVTQNSYGSTSTGIGATAQN 368
Query: 224 ---------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ + + G + ++AL+ + ++ A
Sbjct: 369 SYANGQINPFFGTTTLPGNAIANAPPAGAAITAVVGDAAHYLMARVNALQSTSKVKIDAS 428
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQ 333
P + + A + + + ++ + + GV L P ++ G +++
Sbjct: 429 PLVATLDNSEAVMDNMTRFFVRVSGYTSAD--LYSIATGVSLRVLPLIVQDGSETRIKLN 486
Query: 334 TEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
V++ + + +P + +T + G ++++AG D G+P LSKIP
Sbjct: 487 VHVTDGQLTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYSTDKRSNGVTGVPWLSKIP 546
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421
++GALFR + E +P ++ P
Sbjct: 547 LIGALFRYNSDEHSHMERVFLLSPRIIDP 575
>gi|257125412|ref|YP_003163526.1| type II and III secretion system protein [Leptotrichia buccalis
C-1013-b]
gi|257049351|gb|ACV38535.1| type II and III secretion system protein [Leptotrichia buccalis
C-1013-b]
Length = 400
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/311 (21%), Positives = 124/311 (39%), Gaps = 40/311 (12%)
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
R++ + L F V + + ++ +G I++ +R ++ +
Sbjct: 118 EYRNVKDITEKLNGFF---GFEVIGIDNKIIFNGDESKIEEMRRIIKSLD---------- 164
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADF 234
++QV +K TI + ++ +++G SI ++ + + A F
Sbjct: 165 ---------------KEKEQVIIKGTIIDTSSNLFERLGIDWSINSDNANATKDNLVAKF 209
Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
VS FS G F + L+ IR A PTL + + + L
Sbjct: 210 LNGEVSIASIFSKGGRFLGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVL 265
Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVNAG-D 347
KT T + G+V P + +I L+I TE+S + +
Sbjct: 266 VGEKKTTKKDTEYVEPIFSEAGIVFKINPEIRKINGIKKILLKIDTEISNFKLTSSYNAS 325
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ + + TT+ L +GG+ + GL +D ++ +P+LSKIPI+G LF+ R NRE
Sbjct: 326 SGAKQKNQTKTTITLNNGGSTFIGGLKQDVSKETIRRVPVLSKIPIVGPLFKYRRTNREL 385
Query: 408 TEIFIAATPFL 418
+I+I +
Sbjct: 386 RDIYIEIEAVI 396
>gi|189424524|ref|YP_001951701.1| type II and III secretion system protein [Geobacter lovleyi SZ]
gi|189420783|gb|ACD95181.1| type II and III secretion system protein [Geobacter lovleyi SZ]
Length = 769
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 62/405 (15%), Positives = 124/405 (30%), Gaps = 69/405 (17%)
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
+ + T+ ++ ++ + L L D +R + + +
Sbjct: 245 KILNETTVLIYPQSAEKTK-----QYQDMQLRTFHLNHLDAKKAANLIRTMLQVRRLYIN 299
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
++ +V+ ++ +E + E +V L
Sbjct: 300 EDANALVVRDTSDVTDVIEKILEAHDL-------------------------PEAEVVLD 334
Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---------------- 243
V + E+ +G S G
Sbjct: 335 VEVIEISDKNAHNVGLLLSNYDVQLGAFSPSNELLATTLKDTTSTTSTTVTTDATIKNLV 394
Query: 244 -DFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKT 297
FS+ + + + T L+ P + + + A F G +
Sbjct: 395 KAFSINSFGGYVTVPNAQYNFGKTLTNGEVLSNPKIRVKNKEKAKFNVGTRVPITTTTMA 454
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------MPSY 351
+ +T +V D GV ++ PT+ + +++ EVS + G + +
Sbjct: 455 TTGTTSQVNVQYVDVGVKVNAEPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTI 514
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R DT + L G T V+ GL+ K+ I LL IP++G L NS+ + ++TE+
Sbjct: 515 GTRNLDTVLSLKDGETSVIGGLISHSNSDSKQKIFLLGDIPLIGPLLSNSKTDNDKTELI 574
Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
+A TP LV+ V +F + +
Sbjct: 575 LAITPRLVRGV-----------TVQPRKVTSFISGKEDDPSVTPP 608
>gi|289804850|ref|ZP_06535479.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 230
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 10/229 (4%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
+ + V I +V + Q+G S G +F G + D
Sbjct: 1 MIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTS 56
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
+F L+ALE+++ L++P++ ++ A K + + G
Sbjct: 57 NFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGS 114
Query: 315 VLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVL 370
+L TP +L+ +I L + + + + +P + + + L +G +++L
Sbjct: 115 LLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLL 174
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G + + IPLL IP++G LFRN +V
Sbjct: 175 GGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVV 223
>gi|167840250|ref|ZP_02466934.1| type II/III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 303
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 53/294 (18%), Positives = 109/294 (37%), Gaps = 17/294 (5%)
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
I+ + ++++++ + + + L + + L +
Sbjct: 19 IQADPRTNSILVRDVPEHMAQYPDLIALLDVKPRLIEIEARIIEIDDGALRQLGVDWR-- 76
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLD 252
+ V + Q+S S P+ + G + S+ VL
Sbjct: 77 ----AHNSHVDLQTGTGLTSQNSYANGSLNPTFGSISLSGNDSVGVPASPLGLSLTAVLG 132
Query: 253 RFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
++ALE + RT A P +T + A + Q + ++ + +
Sbjct: 133 DAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSI 190
Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
GV L P V+ G +I L ++ V + ++P + +T + G
Sbjct: 191 STGVSLRVLPMVVEEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQA 249
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+++AG D + G+P+LSK+P+LGALFR++ +E TP +++P
Sbjct: 250 LLIAGYKVDARSNTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 303
>gi|294055468|ref|YP_003549126.1| type II and III secretion system protein [Coraliomargarita
akajimensis DSM 45221]
gi|293614801|gb|ADE54956.1| type II and III secretion system protein [Coraliomargarita
akajimensis DSM 45221]
Length = 906
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/323 (17%), Positives = 106/323 (32%), Gaps = 95/323 (29%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS--------------------------ITGSSSGPS 227
QV ++ EV ++ L+++GF + + S
Sbjct: 544 KQVEIEAKFLEVAQNDLEELGFDWTVGEGAQTIVDEFGAPVLDQFGNPTVAYQRNVSTQG 603
Query: 228 KSFAADFGGKFVSEGGDFS----------------------------VKGVLDRFSFETV 259
++ A F S + + + F
Sbjct: 604 RTLADAFSADTASSAINITDVFGNESSVSTQPPANPSTIDLAANAASLFTATGWSMFGAD 663
Query: 260 LH----ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------------- 301
++ A+ R + ++ P +T +SG+ A+ T + Y
Sbjct: 664 VNLAIRAIARQSGSDLMSAPKVTVLSGKRANITVAQELRYPESYGDIESTVSSNNNGGAA 723
Query: 302 -----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------- 347
+ GV L TP V + I L ++ V+E V G
Sbjct: 724 ISITAGTPEDFVVRNVGVELAVTPNVENDDTISLILEPRVTEFEGFVEYGGPSVALASGT 783
Query: 348 ---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
P + R+ T V + G TIV+ GL +D+++ +++ +P+L IP LG LF
Sbjct: 784 TVTVPAGFYQPVFSTREISTEVTIFDGATIVMGGLTRDEVKYIEDKVPVLGDIPALGRLF 843
Query: 399 RNSRFNREETEIFIAATPFLVKP 421
R+ R++ + I T +V P
Sbjct: 844 RSEGETRQKRNLLIFVTANMVSP 866
>gi|167567958|ref|ZP_02360874.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia oklahomensis EO147]
Length = 577
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 41/269 (15%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---------------------------- 223
+ ++ I E+ D+L+QIG S
Sbjct: 309 RPRLIEIQAHIMEIDDDLLRQIGVDWRAHNSHGDIQTGMGAVTQNSYGSTSTGIGATAQN 368
Query: 224 ---------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ + + G + ++AL+ + ++ A
Sbjct: 369 SYANGQINPFFGTTTLPGNAIANAPPAGAAITAVVGDAARYLMARVNALQSTSKVKIDAS 428
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQ 333
P + + A + + + ++ + + GV L P ++ G +++
Sbjct: 429 PLVATLDNSEAVMDNMTRFFVRVSGYTSAD--LYSIATGVSLRVLPLIVQDGSETRIKLN 486
Query: 334 TEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
V++ + + +P + +T + G ++++AG D G+P LSKIP
Sbjct: 487 VHVTDGQLTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYSTDKRSNGVTGVPWLSKIP 546
Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421
++GALFR + E +P ++ P
Sbjct: 547 LIGALFRYNSDEHSHMERVFLLSPRIIDP 575
>gi|257092071|ref|YP_003165712.1| type II and III secretion system protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257044595|gb|ACV33783.1| type II and III secretion system protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 770
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 38/274 (13%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-GGDFSVKGVL 251
QV L++ I EVR D + F G+S + + G+
Sbjct: 335 PRQVLLEMKILEVRLDNGFRSVFDIGFAGTSKSTGPLPVGVLPTTVPDQYARNAGTTGMF 394
Query: 252 D------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
D S L + ++ L+ P L A + A G + + +
Sbjct: 395 DIEQDATMLWQYMSKSLSLRFQLLAQENKLKVLSSPMLVAANNHPARLFIGDERVLTVGA 454
Query: 300 SSTGAT------------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PV 340
SS T D G L P + + L I + S
Sbjct: 455 SSQSITGTTGATNTQITVETERRDVGQTLSILPRINGDRSVTLTIDQDSSTVRLRDGTIP 514
Query: 341 IGVNAGDMPSYRVRKADT-----TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
I G + + + T T G T+ + G+++D +++ +E +P+L IP+LG
Sbjct: 515 IATGTGGVVYFPIDTVSTANLQVTAHAQDGMTVAIGGMIRDSLERDEEKVPVLGDIPVLG 574
Query: 396 ALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
LF+ ++I + TP +++ P+ ++
Sbjct: 575 YLFKRDVRASIRSQIVLLITPRVLESPLEANSVA 608
>gi|171915747|ref|ZP_02931217.1| putative type III secretion protein YscC [Verrucomicrobium spinosum
DSM 4136]
Length = 650
Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats.
Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 27/263 (10%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------------SITG 221
+++ +L++ + + I +V K G + S
Sbjct: 306 DELIQMLDVPTNA-IEITAAIVDVDTTNGKDFGMEFLGNYTAKDGNKYRFGFEADRSQFD 364
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV--LHALERATAIRTLAEPTLTA 279
P ++ + G + GG +V ++ F+ + L ALE ++ P++
Sbjct: 365 GGEAPPETTPSFVDGTNLVRGGGLNVAALIGGEGFDLLTRLRALETKGGADIVSSPSVLT 424
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSE 338
+ A + + + + GV TP V+ G+ R+ ++++
Sbjct: 425 MENVEA--VVRTEETFYVRVAGDQEVDLFDVTAGVQFRVTPNLVVENGKRSFRLHLDITD 482
Query: 339 PV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ D+P R T +P T+++ G + + IP+L IP++G
Sbjct: 483 GNFEDTSVDDIPGTRESAITTQAIVPESKTLLVGGYFIERKTKNTRQIPILGDIPVVGYA 542
Query: 398 FRNSRFNREETEIFIAATPFLVK 420
F+ E + F TP +V
Sbjct: 543 FKRKEVLNERKQRFFFITPKVVD 565
>gi|32307038|gb|AAP79008.1| MxiD [Shigella flexneri]
Length = 566
Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats.
Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
G + +L + NI ++ D+ V + ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268
Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
ET N + ++ L++A + L + I ++ + L +G
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ SF FG F + LD F + AL + ++ P +
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
A F + V +S+ YG +++ P S G+I + + E
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSQGQIEMSLTIEDGTGNSQ 436
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ N +P K T +P G ++++ G + IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
+F+ N P +K
Sbjct: 497 NVFKYKTRNISNIVRVFLIQPREIK 521
>gi|261884996|ref|ZP_06009035.1| type II and III secretion system protein [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 203
Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats.
Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 17/187 (9%)
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT---------- 308
VL+ LE + ++ P + ++ +A T G Y+ +T + T
Sbjct: 4 VLNFLETKGRTKVVSSPKIMTMNNHNALITVGDNINYRVQEDTTNTNTQTAVSNTTYTQY 63
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-------GDMPSYRVRKADTTVE 361
+ G++L+ P V GRI LRI +S G + P +K T V+
Sbjct: 64 SIFIGILLNLLPEVSDDGRIMLRINPSLSSFKYGDDNRRQANIREIAPDTLQKKLSTVVQ 123
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ SG TI+L GL+ + + +P+L IP+ G LF++++ + TE+ TP ++
Sbjct: 124 VNSGDTIILGGLIGETKGKDNTSVPVLGDIPLFGNLFKSTKDSVSTTELIFIITPKVINN 183
Query: 422 VAMRDLS 428
+ +
Sbjct: 184 ETPKQIR 190
>gi|167573316|ref|ZP_02366190.1| Type III secretion system protein [Burkholderia oklahomensis C6786]
Length = 302
Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats.
Identities = 51/270 (18%), Positives = 103/270 (38%), Gaps = 22/270 (8%)
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ ++ L++ + Q+ L + I ++R+ L Q+G ++ G F G
Sbjct: 30 QDMEALIRSLDV-EKRQIELSLWIIDIRKSRLDQLGIDWQGALNAPGIGVGFNNRGGNVT 88
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
LD F + AL + ++ P + A+F S K +
Sbjct: 89 -----------TLDGTKFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLI 137
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTE-------VSEPVIGVNAGDMPS 350
A + YG +++ P + ++ + + E S+ I ++ MP
Sbjct: 138 --GERAVQLEHVTYGTLVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGRIVIDNNTMPL 195
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ +T +P ++++ G +DD+ + IP L+ IP++G LFR E+
Sbjct: 196 VNRTEINTVARVPHEMSLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFRGHSDRHEQVVR 255
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
P L++ A +P + D+A
Sbjct: 256 VFLIQPKLLRAGAAWPDGQPWESGDPADNA 285
>gi|238898588|ref|YP_002924269.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229466347|gb|ACQ68121.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 553
Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats.
Identities = 39/249 (15%), Positives = 74/249 (29%), Gaps = 19/249 (7%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ L V I ++ ++ L Q+G +F G + + +
Sbjct: 306 IELSVWIIDLDKNTLDQMGVDWK-------GGMNFKNQLGVRLNAGTSTL------EGGQ 352
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
F + AL R ++ P + A F + + + + YG +
Sbjct: 353 FIASVMALSRQKKANVVSRPMVLTQENIPAVFDNNRTFYSELLGEKN--VKLENVTYGTL 410
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAG 372
+ P +I + I E V +P T +P G ++++ G
Sbjct: 411 VSVLPRFTENNQIEMMINIEDGNEVSQSDHETKTSLPKVGRTNISTIARVPKGKSLLVGG 470
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRDLSRPD 431
+D IP L +P++G LF + P + P+
Sbjct: 471 YTRDANTSENTKIPGLGSLPLIGKLFSYENKSISSIVRVFLIQPREINAPLNRDASDLAS 530
Query: 432 DHYSVEDDA 440
D D
Sbjct: 531 DIIKSSSDI 539
>gi|166363715|ref|YP_001655988.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843]
gi|166086088|dbj|BAG00796.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843]
Length = 701
Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 15/187 (8%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310
F L A + + L +P+L GQ A+ + L + + V T
Sbjct: 490 FLMTLQASIQTGNAKILTDPSLVVQEGQQATVKLTQKVLESVQTEVDPLSGVRTITPVLA 549
Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV--------NAGDMPSYRVRKADT-TV 360
D G+ L V G I L + V+ P + + + R+ + V
Sbjct: 550 DAGLTLAVNVDQVDDNGFISLSVSPTVASPGTPIEFNSGGINSGNTLTPLIRRELTSGLV 609
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L G +++L+G++++ Q + +P+L IPILGALFR+ +E+ I TP +++
Sbjct: 610 RLRDGQSLILSGIIQETQQSSETKVPILGDIPILGALFRSRTNQNNRSEVIILLTPKIIE 669
Query: 421 PVAMRDL 427
A L
Sbjct: 670 DTATSTL 676
>gi|223938170|ref|ZP_03630067.1| peptidase M56 BlaR1 [bacterium Ellin514]
gi|223893214|gb|EEF59678.1| peptidase M56 BlaR1 [bacterium Ellin514]
Length = 1633
Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats.
Identities = 70/366 (19%), Positives = 145/366 (39%), Gaps = 16/366 (4%)
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
RT+ + G N +++ G +L + + + I V ++
Sbjct: 281 ARTLAALEELRGSQNQLVMAAAGAPLLQRIRRLLGQAERNPS--HQAWPLAGIIVLLLVA 338
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVT 201
+ + Q +S+T +GR AN+ V + ++ G Q+ ++
Sbjct: 339 ALTIGLRSSRAVADQTQETISKTNKLVTGRMLPANARKTFVQSDKSLTGAQLPQIVVQSK 398
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
EV F +I + + A + VS + G+L ++ +
Sbjct: 399 FFEVDEKD-----FPKAIFNLPAVSNAVCAIATPWQPVSAPKEQCFTGMLTGPQYQAAVK 453
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
LE A+ I L P++ SG+ A + L + +++++ + + +G VL PT
Sbjct: 454 QLEMASCIDMLTAPSVITQSGRQAQIQAVD--LIEILTNASPSAAKMQLPFGPVLDVLPT 511
Query: 322 VLSPGR-IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
V + L V+ + + +P + + T + L G T+V+ GL+ + I
Sbjct: 512 VTPDKLGVQLTGIATVTMLLDAPSVV-LPRIQFTQLSTEMTLKDGQTLVMGGLMPETITI 570
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM---RDLSRPDDHYSVE 437
+K+ +P+L+ IP+ G LFR+ ++ + + TP L+ P D ++P + +
Sbjct: 571 VKDRVPVLADIPLAGRLFRSGSTSKSRKYLIVFVTPTLINPDGSRYHADDTKPTEATVLP 630
Query: 438 DDAKAF 443
+ F
Sbjct: 631 PETLLF 636
Score = 97.9 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/348 (16%), Positives = 111/348 (31%), Gaps = 62/348 (17%)
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
DG Q + ++ + L+ +R F +NI + V + ++ V
Sbjct: 1300 YPKDGTQPVTNLVVHD---RGLQTAIRSFFEKANIDFSPTNPVNVGKSVFYNELNATLMV 1356
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ--IGFQHSI 219
++ L + L Q+ +K E+ Q +G
Sbjct: 1357 RTTQEEL-------------DLIQKELARITPPQINIKARFVEMDETAGSQITLGESMRG 1403
Query: 220 TGSSSGPSKS------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
S + S + ++ V+ GVL ++ + LERA + L
Sbjct: 1404 IDSKTNSSMTQVTTPKVSSSGSFPPVTNALALQFTGVLTPEQYKEAITRLERADGVDLLT 1463
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPG 326
P +T SG+ A + T ++ T S +G VL P V +
Sbjct: 1464 APDVTTESGRRAQIQAVDIKTIITGLTTVYTNGTATNMLSTQNLPFGPVLDVIPKVSADD 1523
Query: 327 -RIGLRIQTEVSEPVI------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
I + + V+E V +P +R+R+ ++ + G TI+L G+
Sbjct: 1524 SSIEMNLVASVTEFVGYDDPKKLAGQKRTDVQIPLPHFRLRQLTSSASVADGHTIILGGV 1583
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
++ + R + + + TP L+ P
Sbjct: 1584 EQNTPGK------------------RGKEKPGKRKTLLVFVTPTLINP 1613
>gi|85059260|ref|YP_454962.1| type III secretion apparatus [Sodalis glossinidius str.
'morsitans']
gi|84779780|dbj|BAE74557.1| type III secretion apparatus [Sodalis glossinidius str.
'morsitans']
Length = 494
Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats.
Identities = 43/268 (16%), Positives = 94/268 (35%), Gaps = 20/268 (7%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
D ++ + + + + ++ + + + V I +V + ++G
Sbjct: 235 ADPRQNAVIVRDYAANMAGYRQLIAALDQ--------RPQMIEIAVMIIDVDVGDINKLG 286
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
S S G SF +D + + + F L+ LE+ L++
Sbjct: 287 IDWSGAMSLGGSGFSFNSD------GDIRGGFSSVISNTNDFMVRLNVLEQRAHAYILSQ 340
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQ 333
P++ ++ A K + + G +L TP ++ G+ + +
Sbjct: 341 PSVVTLNNIQAVLDKNVTFYTKL--QGDKFAKLESVTTGSLLRVTPRLMEDQGKQNIMLS 398
Query: 334 TEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ + +P + + + L G +++L G +D +Q ++ IPLL
Sbjct: 399 LNIQDGQQTSPLSATDPLPQVQNSEIASQATLRPGQSLLLGGFQQDKQKQGQKKIPLLGD 458
Query: 391 IPILGALFRNSRFNREETEIFIAATPFL 418
IP+LG LFR+S +
Sbjct: 459 IPLLGHLFRSSIDETHSVMRLFLIKATV 486
>gi|45751679|emb|CAF21323.1| InvG protein [Burkholderia mallei]
Length = 278
Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats.
Identities = 55/284 (19%), Positives = 106/284 (37%), Gaps = 22/284 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 7 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 66 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 114
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 172
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
IP L+ IP++G LFR E+ P L++ A
Sbjct: 233 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 276
>gi|167566206|ref|ZP_02359122.1| Type III secretion system protein [Burkholderia oklahomensis EO147]
Length = 315
Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/300 (19%), Positives = 110/300 (36%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 13 GFALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 71
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 72 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 120
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
++ P + A+F S K + A + YG +++ P + +
Sbjct: 121 ATVISRPIVLTQENVPATFDSNQTFYAKLI--GERAVQLERVTYGTLVNVLPRLTRDASQ 178
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 179 VEMIVDIEDGNTDGATSDGRIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 238
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ IP++G LFR E+ P L++ A +P + D+A
Sbjct: 239 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 298
>gi|254255049|ref|ZP_04948366.1| Type II secretory pathway component PulD [Burkholderia dolosa
AUO158]
gi|124899694|gb|EAY71537.1| Type II secretory pathway component PulD [Burkholderia dolosa
AUO158]
Length = 552
Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats.
Identities = 66/327 (20%), Positives = 108/327 (33%), Gaps = 41/327 (12%)
Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ---RAVELSETFLSQSGRNQY 176
I + ++R I + N VE + A++ +
Sbjct: 203 IPGIATLVQRAIGEENAIVETKRLDASASKEAVNPAAADGTMPALDAAIGPPPTRPSGAV 262
Query: 177 ANSSSKKV-------MNLLNIAG-EDQV-----------------TLKVTIAEVRRDILK 211
SSS V N L + G +QV L + I ++ R+ L
Sbjct: 263 QTSSSHGVRIVAYPETNSLMVKGTPEQVKFVRQLVQALDEEKRHIELALWIIDLEREALD 322
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
Q+G T S G S S + + GG F + AL R +
Sbjct: 323 QLGVNWRGTVSLGGMSASLNMNNNTSLSTVGG----------TEFIASVTALARDRRAQI 372
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
++ P + A F S K V A + YG +++ P + I L
Sbjct: 373 VSRPVVLTQENTPAVFDSSQTFYAKLV--GERAVDLKEVTYGTMVNVVPRFNAKDDIELA 430
Query: 332 IQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ E S V+ MP+ K T +P G ++++ G + + + E IP L
Sbjct: 431 LNIEDGSAKSSNVDQDPMPTVNRTKISTVARVPKGKSLLVGGYTRGETGDVVEKIPGLGS 490
Query: 391 IPILGALFRNSRFNREETEIFIAATPF 417
+P +G LFR +T +P
Sbjct: 491 LPFIGGLFRFKTEVNRDTVRVFLISPR 517
>gi|167573369|ref|ZP_02366243.1| type II/III secretion system protein [Burkholderia oklahomensis
C6786]
Length = 607
Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats.
Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 12/226 (5%)
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK------FVSEGGDFSVKGVLDRFSFET 258
+ + Q+S S P+ + G G +
Sbjct: 385 IDLQTGTGLTAQNSYANGSLNPTFGSISLSGNGDSVGVPASPLGLSLTAVLGDAGRYLLA 444
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
++ALE + RT A P +T + A + Q + ++ + + GV L
Sbjct: 445 RINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRV 502
Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
P V+ G +I L ++ V + ++P + +T + G +++AG
Sbjct: 503 LPMVVEEGGHTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 561
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
D G+P+LSK+P++GALFR++ TE TP +++P
Sbjct: 562 DSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIEP 607
>gi|146305065|ref|YP_001185530.1| YscC/HrcC family type III secretion outer membrane protein
[Pseudomonas mendocina ymp]
gi|145573266|gb|ABP82798.1| type III secretion outer membrane pore, YscC/HrcC family
[Pseudomonas mendocina ymp]
Length = 696
Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats.
Identities = 54/321 (16%), Positives = 104/321 (32%), Gaps = 20/321 (6%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
R + + ++ L++ + + + I ++ R+ L ++ + +
Sbjct: 282 RVSADVRNNAVLIYDLPERKAIYQGLIQQLDVP-RNLIEIDAVILDIDRNELAELSSRWA 340
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ + GG + E G S + D F L ALE A + P++
Sbjct: 341 F---------NSGSVSGGANLFEPGTTSTLFIQDAGRFAAELRALEGTGAASIMGNPSIL 391
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
+ Q A + + ++ G L P L+ G ++ L + E
Sbjct: 392 TLENQPAVIDFSRTEYLTAL--AERVANIQPITAGTSLQVIPRSLNQGSRSQVQLIVDIE 449
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ + + + PS R T + G++V+ G + IPLL IP++G
Sbjct: 450 DGQIIESNISEEQPSVRRGNVSTQAVIAEHGSLVIGGFHSLEANDRINKIPLLGDIPVIG 509
Query: 396 A-LFRNSRFNREETEIFIAATPFL----VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
LF++ E TP L V P P + +
Sbjct: 510 KLLFQSRNREFNRRERLFILTPRLIGDQVNPARYVQHGNPHNLDRQLREIDERRRGTERP 569
Query: 451 IYGPKEASEVEGQNYKGAIGF 471
G E + + + GF
Sbjct: 570 SRGDIEHAFTQLLDGIHPSGF 590
>gi|167577430|ref|ZP_02370304.1| type III secretion system protein BsaO [Burkholderia thailandensis
TXDOH]
Length = 339
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/302 (18%), Positives = 112/302 (37%), Gaps = 22/302 (7%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
+ G+ D RAV +T + ++ L++ + Q+ L + I ++R
Sbjct: 35 VGGVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIR 93
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ L Q+G ++ G F G LD F + AL +
Sbjct: 94 KSRLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQT 142
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP- 325
++ P + A+F S K + T + YG +++ P +
Sbjct: 143 GDATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDA 200
Query: 326 GRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
++ + + E S+ I ++ MP + +T +P ++++ G +DD+
Sbjct: 201 SQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDV 260
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
+ IP L+ IP++G LFR E+ P L++ A +P + D
Sbjct: 261 TRRTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPAD 320
Query: 439 DA 440
+A
Sbjct: 321 NA 322
>gi|282890886|ref|ZP_06299403.1| putative type III secretion protein SctC [Parachlamydia
acanthamoebae str. Hall's coccus]
gi|281499240|gb|EFB41542.1| putative type III secretion protein SctC [Parachlamydia
acanthamoebae str. Hall's coccus]
Length = 956
Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats.
Identities = 61/368 (16%), Positives = 119/368 (32%), Gaps = 73/368 (19%)
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQR 159
L G + LI + L + +A N ++ S++++ G V +I+ +
Sbjct: 555 LQYRKGADIQQALSLIGASLNRLGQSNDDLVATINTVQWLESSNSLIFTGTVESIRKLEE 614
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ +T L QV +++ I ++ D Q G
Sbjct: 615 LIAELDTPL-------------------------RQVFIEMLILDISLDDSLQYGVNWGT 649
Query: 220 TGSSSGPSKSFAADFGGKFVSEG------------------------------------G 243
+ S A + G
Sbjct: 650 RFGGGNVAGSQAFLSDASTLPAALDTTGIVNNRGITTGQTLLPNASGLARLPGYNLGVLG 709
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
G L S ++ A+ T + P + +A G ++T S S
Sbjct: 710 QNVSLGNLTFDSIGALVKAIHDKTNTNIIMNPKILTEDNVTAEIFVGFNTPFQTQSISNI 769
Query: 304 -----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYR 352
A + + G TP + + + L I+ EVS + + P+ R
Sbjct: 770 GGTPIANNFEFRNVGTTFKVTPFLGNNDIVTLEIREEVSSVASTTTSDVLNTALPGPTTR 829
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
+ + T V +P +VL+G+++D+ + + +P L +PI+GA F + + + I I
Sbjct: 830 LSRTTTRVHVPDKYFLVLSGMMQDEDTRRRVNVPCLGGLPIIGAAFSDKTVSDAKRNIMI 889
Query: 413 AATPFLVK 420
P ++
Sbjct: 890 FIRPEIID 897
>gi|15042148|gb|AAK81929.1|AF292566_13 RscC [Pseudomonas fluorescens]
Length = 713
Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats.
Identities = 46/326 (14%), Positives = 92/326 (28%), Gaps = 20/326 (6%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
++ L L + +N + + + R
Sbjct: 253 TPNVPRLGNPLLGQMLGANGNAGQLDTGPTVTPRAPVSKSRIRVEADVRNNAVLIYDLPE 312
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
+ + ++ L++A + + + I ++ R L++ G S + A
Sbjct: 313 RQAMYRDLITQLDVARKL-IEIDAIILDIERTQLREFGVNWGFQNSRFRGGVNMAPGTSS 371
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ + D + ++ P++ + Q A
Sbjct: 372 QVSIDHRDRFYADMPSTGG----------QGPATMVSNPSVLTLENQPAVIDFNRTQYIS 421
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
VT G L P V + +I L + E D V
Sbjct: 422 PGRDYATILPVT---VGTSLQVVPRVTTGRGVHQIHLVVDIEDGNLDETNPERDPNHLDV 478
Query: 354 RK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEI 410
R+ T + ++V+ G D ++ IPLL IP+LG L ++ + E
Sbjct: 479 RRGKVSTQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKTLVSSTERHNNRRER 538
Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSV 436
TP ++ P D +
Sbjct: 539 LFILTPRVIGDQDDPSRYLPQDDQAE 564
>gi|53716218|ref|YP_106182.1| type II/III secretion system protein [Burkholderia mallei ATCC
23344]
gi|124381659|ref|YP_001025783.1| type II/III secretion system protein [Burkholderia mallei NCTC
10229]
gi|126446314|ref|YP_001077867.1| type II/III secretion system protein [Burkholderia mallei NCTC
10247]
gi|254201058|ref|ZP_04907423.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia mallei FMH]
gi|254205023|ref|ZP_04911376.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia mallei JHU]
gi|254359145|ref|ZP_04975417.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia mallei 2002721280]
gi|52422188|gb|AAU45758.1| type II/III secretion system protein [Burkholderia mallei ATCC
23344]
gi|126239168|gb|ABO02280.1| type II/III secretion system protein [Burkholderia mallei NCTC
10247]
gi|147748670|gb|EDK55745.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia mallei FMH]
gi|147754609|gb|EDK61673.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia mallei JHU]
gi|148028332|gb|EDK86292.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia mallei 2002721280]
gi|261826429|gb|ABM99750.2| type II/III secretion system protein [Burkholderia mallei NCTC
10229]
Length = 599
Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ALE + RT A P +T + A + Q + ++
Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGCTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599
>gi|254175910|ref|ZP_04882568.1| type II/III secretion system protein [Burkholderia mallei ATCC
10399]
gi|160696952|gb|EDP86922.1| type II/III secretion system protein [Burkholderia mallei ATCC
10399]
Length = 599
Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ALE + RT A P +T + A + Q + ++
Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGCTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599
>gi|187734437|ref|YP_001883208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC
3083-94]
gi|187426933|gb|ACD06208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC
3083-94]
Length = 566
Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats.
Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
G + +L + NI ++ D+ V + ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268
Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
ET N + ++ L++A + L + I ++ + L +G
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ SF FG F + LD F + AL + ++ P +
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
A F + V +S+ YG +++ P S G+I + + E
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ N +P K T +P G ++++ G + IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
+F+ N P +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521
>gi|242316560|ref|ZP_04815576.1| general secretion pathway protein D [Burkholderia pseudomallei
1106b]
gi|242139799|gb|EES26201.1| general secretion pathway protein D [Burkholderia pseudomallei
1106b]
Length = 235
Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 4/144 (2%)
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
+ GQ+ +G + +++ + D G+ LH P + G + L++ TE S
Sbjct: 1 MVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAV 60
Query: 340 VIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
V G N P++ R +TV +G IVL GL++D+ Q +PLL IP +G
Sbjct: 61 VPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIG 120
Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
LFR+ R++T + + P ++
Sbjct: 121 QLFRSEGKTRQKTNLMVFLRPVII 144
>gi|94969024|ref|YP_591072.1| type II and III secretion system protein [Candidatus Koribacter
versatilis Ellin345]
gi|94551074|gb|ABF40998.1| type II and III secretion system protein [Candidatus Koribacter
versatilis Ellin345]
Length = 764
Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats.
Identities = 56/331 (16%), Positives = 121/331 (36%), Gaps = 23/331 (6%)
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
+ ++ ++ L T+R + + ++ +V+ G + Q+ ++ +
Sbjct: 244 RTFYLSNLSQPTELQDLVNTIRTIVEVNRVQQLPTQGAIVVRGTPDQVALVQKLIDDIDK 303
Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
+ SK M L I ++ V++A L ++ +++G
Sbjct: 304 ARPEVVVEVAVMQVSKTKMRNLGIQPPS--SISVSMA----SNLSSNNNNNNNNNNNNGN 357
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAIS 281
G + G + L+ +F + L + + P++ A+
Sbjct: 358 GNGNGTGTGTDNSNGGISLNDLAHLNATNFILTVPTATANFLFSDADTKLIQNPSIRAVD 417
Query: 282 GQSASFTSGGQHLYKTVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
GQ A+ G + T S G T D GV + TP + + + ++
Sbjct: 418 GQKATLKIGDRIPVATGSFQPGIGGVGINPLVNTQFNYIDVGVNIDITPRIHANNEVSMK 477
Query: 332 IQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ +VS + P+ RK + + L G +L G+L+ + + G+P LS
Sbjct: 478 LVLDVSSVTGYQNIGGIQQPTIGQRKIEHEIRLKDGEINLLGGILQSEDDKTIAGLPYLS 537
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
+IP+L F + ++E+ P +V+
Sbjct: 538 QIPLLRYFFSTDNKTKSDSEVVFVVIPHIVR 568
>gi|194435190|ref|ZP_03067420.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella
dysenteriae 1012]
gi|194416569|gb|EDX32708.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella
dysenteriae 1012]
Length = 566
Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats.
Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
G + +L + NI ++ D+ V + ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268
Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
ET N + ++ L++A + L + I ++ + L +G
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ SF FG F + LD F + AL + ++ P +
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
A F + V +S+ YG +++ P S G+I + + E
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ N +P K T +P G ++++ G + IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
+F+ N P +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521
>gi|53722615|ref|YP_111600.1| type III secretion system protein [Burkholderia pseudomallei
K96243]
gi|52213029|emb|CAH39067.1| putative type III secretion system protein [Burkholderia
pseudomallei K96243]
Length = 601
Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ALE + RT A P +T + A + Q + ++
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601
>gi|76819172|ref|YP_335807.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia pseudomallei 1710b]
gi|226198470|ref|ZP_03794038.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei Pakistan 9]
gi|254264542|ref|ZP_04955407.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1710a]
gi|254301393|ref|ZP_04968837.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 406e]
gi|76583645|gb|ABA53119.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1710b]
gi|157811287|gb|EDO88457.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 406e]
gi|225929527|gb|EEH25546.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei Pakistan 9]
gi|254215544|gb|EET04929.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1710a]
Length = 601
Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ALE + RT A P +T + A + Q + ++
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601
>gi|126457187|ref|YP_001076198.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia pseudomallei 1106a]
gi|242313849|ref|ZP_04812866.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1106b]
gi|126230955|gb|ABN94368.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1106a]
gi|242137088|gb|EES23491.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1106b]
Length = 599
Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ALE + RT A P +T + A + Q + ++
Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599
>gi|217425129|ref|ZP_03456624.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 576]
gi|217391734|gb|EEC31761.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 576]
Length = 601
Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ALE + RT A P +T + A + Q + ++
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601
>gi|237508433|ref|ZP_04521148.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei MSHR346]
gi|235000638|gb|EEP50062.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei MSHR346]
Length = 601
Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ALE + RT A P +T + A + Q + ++
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601
>gi|82524589|ref|YP_406184.1| MxiD [Shigella dysenteriae Sd197]
gi|81243987|gb|ABB64696.1| MxiD [Shigella dysenteriae Sd197]
Length = 566
Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats.
Identities = 55/325 (16%), Positives = 103/325 (31%), Gaps = 22/325 (6%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
G + +L + NI ++ D V + ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAKNDLMPPFNITQKVSEDGNDFSFSSVTNNSILEDVSLIA 268
Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
ET N + ++ L++A + L + I ++ + L +G
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ SF FG F + LD F + AL + ++ P +
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
A F + V +S+ YG +++ P S G+I + + E
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSL 436
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ N +P K T +P G ++++ G + IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
+F+ N P +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521
>gi|126445193|ref|YP_001063243.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia pseudomallei 668]
gi|126224684|gb|ABN88189.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 668]
Length = 601
Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ALE + RT A P +T + A + Q + ++
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601
>gi|254185101|ref|ZP_04891690.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1655]
gi|184215693|gb|EDU12674.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 1655]
Length = 601
Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ALE + RT A P +T + A + Q + ++
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601
>gi|134281959|ref|ZP_01768665.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 305]
gi|134246488|gb|EBA46576.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei 305]
Length = 601
Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ALE + RT A P +T + A + Q + ++
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601
>gi|94985829|ref|YP_605193.1| type II and III secretion system protein [Deinococcus geothermalis
DSM 11300]
gi|94556110|gb|ABF46024.1| type IV pilus assembly protein PilQ [Deinococcus geothermalis DSM
11300]
Length = 673
Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats.
Identities = 77/427 (18%), Positives = 147/427 (34%), Gaps = 40/427 (9%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV--PVDVQDVLVS 72
L S+ K+ P+ + VI ++ + +++ P VQ V
Sbjct: 266 ALLSAQYPELKVTPVGQTGQLVITGPQNQLDAALALLAQVDRPAPAPQAGPQTVQRVF-- 323
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-LIERDIAHLEMTLRRFI 131
+ + + G L +G ++ + D +T+
Sbjct: 324 -------QLVNASAEEVKATLEGTLARDLTPANGNAQTLANVPVNATDANGNPITVTVPT 376
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
S+ S+ + + L G + ++ V L +
Sbjct: 377 TGSSAGQTANSNAQQPQQAAPNSNGATIIADKRTNTLIVRGTPEQVTQIAELVPQLDQV- 435
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
Q+ ++V I E+ + +G + S G F L
Sbjct: 436 -VPQINVQVRIQEITETAARTLGLDWKVNFGGFNVSVGSGG--------LGATFDPTQSL 486
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQ----SASFTSGGQHLYKTVSSSTGATSV 307
F+ L ALE + + + +T SGQ SA+ T S G +
Sbjct: 487 VGFNIFPTLQALENQGLTKRVYDGNITMQSGQRSLGSATNTQNASANAAASIKSGGRLEI 546
Query: 308 T----------THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRV 353
DYG+ L F P V G + LR++ +V+ + +P+ +
Sbjct: 547 NIPSSSGNIEKQIDYGLNLDFFDPQVAPDGTVTLRVRGQVNNIAGTLPTTSVPNLLNFTN 606
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
+A +T+ SG T++++GLL + +G+P LS +P++GA F RE++++ +
Sbjct: 607 SEAQSTITFKSGQTVLMSGLLGTTESRTNDGVPFLSSLPVIGAAFGKQTTRREQSQLLVI 666
Query: 414 ATPFLVK 420
T +VK
Sbjct: 667 ITGSVVK 673
>gi|45751739|emb|CAF25120.1| InvG protein [Burkholderia pseudomallei]
Length = 270
Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats.
Identities = 55/284 (19%), Positives = 106/284 (37%), Gaps = 22/284 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 1 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 59
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 60 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 108
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 109 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 166
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 167 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 226
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
IP L+ IP++G LFR E+ P L++ A
Sbjct: 227 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 270
>gi|254194240|ref|ZP_04900672.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei S13]
gi|169650991|gb|EDS83684.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei S13]
Length = 601
Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ALE + RT A P +T + A + Q + ++
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601
>gi|254186924|ref|ZP_04893440.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei Pasteur 52237]
gi|157934608|gb|EDO90278.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia pseudomallei Pasteur 52237]
Length = 599
Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ALE + RT A P +T + A + Q + ++
Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599
>gi|332297951|ref|YP_004439873.1| type II and III secretion system protein [Treponema brennaborense
DSM 12168]
gi|332181054|gb|AEE16742.1| type II and III secretion system protein [Treponema brennaborense
DSM 12168]
Length = 667
Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats.
Identities = 50/252 (19%), Positives = 93/252 (36%), Gaps = 15/252 (5%)
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
I + ++ G S++ S G + G +V G L F ++
Sbjct: 414 ILQYQKSSNLSWGITSSMSPLSPGNKTLVTGELGNLLNLSFDAITVFGYL----FAARIN 469
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVV 315
A + TL +SGQ +F + ++ G+V
Sbjct: 470 AALSKNEANVFTDTTLYGVSGQKITFKNTNTFRYRDSNIDPQTGKPLYTGITREIISGLV 529
Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
L + G + + + VS+ + G+ P + T V+ SG +VL+GL
Sbjct: 530 LEIDGWISGDGMVTMDVTASVSKRGVDVSTKTGNPPPTSEKIVTTQVKARSGEPVVLSGL 589
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
++D +++G+P +S+IP+LG LF++ E+ E+ I P + + SR D
Sbjct: 590 TQNDKTFVEQGVPFISRIPVLGNLFKSRDETEEKNEMVIYLVPHI---EETQTDSRGTDT 646
Query: 434 YSVEDDAKAFFF 445
+
Sbjct: 647 RKRAAYEELVLN 658
>gi|45751675|emb|CAF21321.1| InvG protein [Burkholderia mallei NCTC 10247]
Length = 272
Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats.
Identities = 55/285 (19%), Positives = 106/285 (37%), Gaps = 22/285 (7%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 2 AGVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRK 60
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
L Q+G ++ G F G LD F + AL +
Sbjct: 61 SRLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTG 109
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
++ P + A+F S K + T + YG +++ P + G
Sbjct: 110 DATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGS 167
Query: 327 RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
++ + + E S+ I ++ MP + +T +P ++++ G +DD+
Sbjct: 168 QVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVT 227
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
+ IP L+ IP++G LFR E+ P L++ A
Sbjct: 228 RRTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 272
>gi|167615580|ref|ZP_02384215.1| type III secretion system protein BsaO [Burkholderia thailandensis
Bt4]
Length = 351
Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 22/300 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 49 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 107
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 108 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 156
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
++ P + A+F S K + T + YG +++ P + +
Sbjct: 157 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 214
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 215 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 274
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
IP L+ +P++G LFR E+ P L++ A +P + D+A
Sbjct: 275 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 334
>gi|254412671|ref|ZP_05026444.1| Bacterial type II and III secretion system protein [Microcoleus
chthonoplastes PCC 7420]
gi|196180406|gb|EDX75397.1| Bacterial type II and III secretion system protein [Microcoleus
chthonoplastes PCC 7420]
Length = 979
Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats.
Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 18/208 (8%)
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH---- 310
F L A + + L +PT+ GQ+A+ + + S + A +TT
Sbjct: 767 DFLAQLQAQITSGNAKILTDPTIVVQEGQTATVNLTQEVVGNIRSETESADGLTTRTVTA 826
Query: 311 ---DYGVVLH-FTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADT-T 359
+ G++L + G + L + EV+ IG + + R+ +
Sbjct: 827 EIREAGLILELIVDRIDDNGFVTLAVNPEVTSIGSVQNLSIGDDTNQIALLNTRELTSGQ 886
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ L G T++L+G++++ + +P+L +PILGALFR++ + E+ + TP ++
Sbjct: 887 IRLRDGQTLILSGIIQESDRTTVRKVPILGDLPILGALFRSTERQNQRQEVIVLLTPQIL 946
Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
+Y+ +A+ R
Sbjct: 947 DDSERGAFGY---NYTPGREAQEVLQRR 971
>gi|320334143|ref|YP_004170854.1| type II and III secretion system protein [Deinococcus maricopensis
DSM 21211]
gi|319755432|gb|ADV67189.1| type II and III secretion system protein [Deinococcus maricopensis
DSM 21211]
Length = 676
Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats.
Identities = 79/428 (18%), Positives = 157/428 (36%), Gaps = 55/428 (12%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV-PVDVQDVL-VS 72
L + ++ P+ VI +I + +++ ++ Q P VQ V +
Sbjct: 282 ALLGAQYPNLRVTPVGSTGQLVITGPQNQIEAALGLLAQVDRPVVAQSGPQVVQRVFQLV 341
Query: 73 DPTKADVVVHSPRTMY--LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
+ +V T+ L G A G T
Sbjct: 342 NAGADEVKATLEGTLQRDLTGDPASSAATTTSNTAGSTTSGAATTSPAQTGASATTAATT 401
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
+ I + ++++++ G + +++ + + L +
Sbjct: 402 GNGATIISDKRTNSLIVRGT------QAQVTQIA-----------------ELIPQLDQV 438
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
Q+ ++V I E+ + +G + G A G + + F
Sbjct: 439 --VPQINVQVRIQEINETAARTLGVDWNA---GFGNFVVRIAQTGLQAL-----FDPTRA 488
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQS--------------ASFTSGGQHLYK 296
L + L+ALE + + + ++T SGQ AS T +
Sbjct: 489 LAGINLGATLNALETQNMTKRVYDGSVTMQSGQRSVGTAGGAQNASSGASATIKSGGRLE 548
Query: 297 TVSSSTGATSVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YR 352
S V DYGV L F P V G I LR++ +V++P + G +P+ +
Sbjct: 549 VTIPSESGNIVRQIDYGVNLDFIDPQVAPDGTITLRVRGQVNQPASPITGGTLPNLLNFT 608
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
+A TT+ SG T++L+GLL + + + G+P LS +P++G LF + ++ ++++ +
Sbjct: 609 NSEAQTTITFKSGQTVLLSGLLGTNESRNRTGVPFLSSLPVIGGLFGTEQTSKTQSQLLV 668
Query: 413 AATPFLVK 420
T +V+
Sbjct: 669 VITGTVVR 676
>gi|256259410|gb|ACU65047.1| HrcC [Pseudomonas syringae pv. syringae]
Length = 701
Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats.
Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 17/230 (7%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ + I +V R + ++ ++ + GG ++E G S V D+
Sbjct: 317 IEIDAIIVDVDRSQMDELSSNWGLSAGNFS---------GGANIAENGRSSTMFVQDQDK 367
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
F L ALE + + P++ + Q A + + V + G
Sbjct: 368 FFAGLRALEGNGSATVIGNPSVLTLENQPAVIDFSQTEILEAV--GERVANFQPLTAGTS 425
Query: 316 LHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
L P + I L + E + + PS R T + ++V+
Sbjct: 426 LQVIPRSITASGAKNQMIQLVVDIEDGQIEESNIRAEQPSVRRGNVSTQAVIAEKASLVV 485
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
G + + + +P LS IPILG LF + E TP LV
Sbjct: 486 GGFHVYENNERTKKVPYLSAIPILGKLLFTARERGQSNRERLFILTPRLV 535
>gi|13449092|ref|NP_085308.1| Type III secretion protein [Shigella flexneri 5a]
gi|547951|sp|Q04641|MXID_SHIFL RecName: Full=Outer membrane protein mxiD; Flags: Precursor
gi|13310640|gb|AAK18464.1|AF348706_153 Type III secretion protein [Shigella flexneri 5a]
gi|47042|emb|CAA47644.1| MXID [Shigella flexneri]
gi|12329089|emb|CAC05820.1| MxiD, outermembrane protein of the secretin family, component of
the Mxi-Spa secretion machinery [Shigella flexneri]
Length = 566
Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
G + +L + NI ++ D+ V + ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268
Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
ET N + ++ L++A + L + I ++ + L +G
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ SF FG F + LD F + AL + ++ P +
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
A F + V +S+ YG +++ P S G+I + + E
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ N +P K T +P G ++++ G + IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIISIPFLSSIPVIG 496
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
+F+ N P +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521
>gi|167003376|ref|ZP_02269162.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia mallei PRL-20]
gi|243061081|gb|EES43267.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia mallei PRL-20]
Length = 599
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 89/240 (37%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ALE + RT A P +T + A + Q + ++
Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGCTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P++GALFR++ +E F TP +++P
Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERFFLVTPRVIEP 599
>gi|74314944|ref|YP_313362.1| MxiD [Shigella sonnei Ss046]
gi|73858421|gb|AAZ91127.1| MxiD [Shigella sonnei Ss046]
Length = 566
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
G + +L + NI ++ D+ V + ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268
Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
ET N + ++ L++A + L + I ++ + L +G
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ SF FG F + LD F + AL + ++ P +
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
A F + V +S+ YG +++ P S G+I + + E
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ N +P K T +P G ++++ G + IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
+F+ N P +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521
>gi|2495097|sp|Q55293|MXID_SHISO RecName: Full=Outer membrane protein mxiD; Flags: Precursor
gi|829072|dbj|BAA09154.1| ORF14 [Shigella sonnei]
Length = 566
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
G + +L + NI ++ D+ V + ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268
Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
ET N + ++ L++A + L + I ++ + L +G
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ SF FG F + LD F + AL + ++ P +
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
A F + V +S+ YG +++ P S G+I + + E
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ N +P K T +P G ++++ G + IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
+F+ N P +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521
>gi|333011815|gb|EGK31216.1| hypothetical protein SFK227_5449 [Shigella flexneri K-227]
gi|333011862|gb|EGK31255.1| hypothetical protein SFK227_5390 [Shigella flexneri K-227]
Length = 566
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/300 (17%), Positives = 100/300 (33%), Gaps = 22/300 (7%)
Query: 131 IADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS--ETFLSQSGRNQYANSSSKKVMNL 187
+ NI ++ D+ V + ++ ET N + ++
Sbjct: 234 MPPFNITQKVSEDSNDFSFSSVTNSSVLEDVSLIAYPETNSILVKGNDQQIQIIRDIITQ 293
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
L++A + L + I ++ + L +G + SF FG F +
Sbjct: 294 LDVAKRH-IELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
LD F + AL + ++ P + A F + V +S+
Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360
YG +++ P S G+I + + E + N +P K T
Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+P G ++++ G + IP LS IP++G +F+ N P +K
Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISNIVRVFLIQPREIK 521
>gi|83717709|ref|YP_438974.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|83651534|gb|ABC35598.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
Length = 605
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 11/225 (4%)
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLDRFS--FETV 259
V + Q+S + P+ + G + S+ VL
Sbjct: 384 VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 443
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
+ ALE + RT A P +T + A + Q + ++ + + GV L
Sbjct: 444 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVL 501
Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
P V+ G +I L ++ V + ++P + +T + G +++AG D
Sbjct: 502 PMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 560
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G+P+LSK+P+LGALFR++ +E TP +++P
Sbjct: 561 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 605
>gi|332711134|ref|ZP_08431068.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L]
gi|332350116|gb|EGJ29722.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L]
Length = 810
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 16/227 (7%)
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLA 273
F G ++ P + D + +FS+ + + F L A ++ + L
Sbjct: 557 FARPGFGRNNNPFQPGVTDVQRQDDGNEFEFSLPSLFEYPDKFLLTLQAQITSSNAKILT 616
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-------DYGVVLHF-TPTVLSP 325
+PTL GQ AS + L + V T + G+ L +
Sbjct: 617 DPTLVIQEGQEASVKLVQEVLTSVTTDIDLDGGVATRTITPVIEEAGLTLTVNVDRIDDN 676
Query: 326 GRIGLRIQTEVSEPVIG------VNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDI 378
G I L ++ P ++ R+ + V L G T++L+G+++D
Sbjct: 677 GFITLSTSPVITAPSGTQEFNSDNAQNEITFLSRRELSSGLVRLRDGQTLILSGIIQDTD 736
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
+ +P+L IP+LGALFR++ + +E+ I TP ++
Sbjct: 737 RTTVSKVPILGDIPLLGALFRSTNKQNQRSEVIILVTPQIMDDTDRN 783
>gi|257142080|ref|ZP_05590342.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
Length = 598
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 11/225 (4%)
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLDRFS--FETV 259
V + Q+S + P+ + G + S+ VL
Sbjct: 377 VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 436
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
+ ALE + RT A P +T + A + Q + ++ + + GV L
Sbjct: 437 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVL 494
Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
P V+ G +I L ++ V + ++P + +T + G +++AG D
Sbjct: 495 PMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 553
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G+P+LSK+P+LGALFR++ +E TP +++P
Sbjct: 554 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 598
>gi|45751671|emb|CAF21319.1| InvG protein [Burkholderia thailandensis]
Length = 285
Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 22/284 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 6 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 64
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 65 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 113
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
++ P + A+F S K + T + YG +++ P + +
Sbjct: 114 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 171
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 172 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 231
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
IP L+ +P++G LFR E+ P L++ A
Sbjct: 232 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 275
>gi|31983567|ref|NP_858278.1| outermembrane protein MxiD [Shigella flexneri 2a str. 301]
gi|18462559|gb|AAL72331.1| MxiD, outermembrane protein of the secretin family, component of
the Mxi-Spa secretion machinery [Shigella flexneri 2a
str. 301]
gi|281603900|gb|ADA76883.1| MxiD, outermembrane protein of the secretin family, component of
the Mxi-Spa secretion machinery [Shigella flexneri
2002017]
gi|333003155|gb|EGK22704.1| hypothetical protein SFK218_2878 [Shigella flexneri K-218]
gi|333020387|gb|EGK39651.1| hypothetical protein SFK304_1148 [Shigella flexneri K-304]
Length = 566
Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats.
Identities = 56/325 (17%), Positives = 104/325 (32%), Gaps = 22/325 (6%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
G + +L + NI ++ D+ V + ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268
Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
ET N + ++ L+IA + L + I ++ + L +G
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDIAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ SF FG F + LD F + AL + ++ P +
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
A F + V +S+ YG +++ P S G+I + + E
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ N +P K T +P G ++++ G + IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIISIPFLSSIPVIG 496
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
+F+ N P +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521
>gi|302185350|ref|ZP_07262023.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
syringae 642]
Length = 690
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 17/230 (7%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ + I +V R + ++ ++ + GG ++E G S V D+
Sbjct: 306 IEIDAIIVDVDRSQMDELSSNWGLSAGNFS---------GGANIAENGRSSTMFVQDQDK 356
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
F L ALE + + P++ + Q A + + V + G
Sbjct: 357 FFAGLRALEGNGSATVIGNPSVLTLENQPAVIDFSQTEILEAV--GERVANFQPLTAGTS 414
Query: 316 LHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
L P + I L + E + + PS R T + ++V+
Sbjct: 415 LQVIPRSITASGAKNQMIQLVVDIEDGQIEESNIRAEQPSVRRGNVSTQAVIAEKASLVV 474
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
G + + + +P LS IPILG LF + E TP LV
Sbjct: 475 GGFHVYENNERTKKVPYLSAIPILGKLLFTARERGQSNRERLFILTPRLV 524
>gi|78779577|ref|YP_397689.1| Type II secretory pathway component PulD-like [Prochlorococcus
marinus str. MIT 9312]
gi|78713076|gb|ABB50253.1| Type II secretory pathway component PulD-like protein
[Prochlorococcus marinus str. MIT 9312]
Length = 556
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/250 (18%), Positives = 79/250 (31%), Gaps = 28/250 (11%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+ QV L V + +V + S P S +
Sbjct: 288 KRQKQVALNVKVLDVNLSDKDSFSQSWFLPFGSGSPYIIT--------QSPNLKAGIGPD 339
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISG---------------QSASFTSGGQHLY 295
+ L A + + LA PTL G Q
Sbjct: 340 RLGKFVSSELTASIQKGTTKVLASPTLILNESGGSAGDGSSIGRRLANEGFVEVGDQVPV 399
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIG---VNAGDMPSY 351
+ T G+ L + R + + V+ N G++
Sbjct: 400 NATFVEGSGCNFTYDLVGIKLGAKVLGIDRNRFVTFAMTPIVTGISGTQTITNCGEVNLL 459
Query: 352 RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
R+ DT V + +G T+VL G+++D + P+L +PI+G LFR++ + E+
Sbjct: 460 NTRRLDTGAVRIKNGETLVLTGVIQDSDIETLVKFPILGDLPIMGPLFRSTSKEVGKREL 519
Query: 411 FIAATPFLVK 420
+ TP ++
Sbjct: 520 IVLVTPRIID 529
>gi|45751693|emb|CAF21330.1| InvG protein [Burkholderia thailandensis ATCC 700388]
Length = 282
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 22/284 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 6 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 64
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 65 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 113
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
++ P + A+F S K + T + YG +++ P + +
Sbjct: 114 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 171
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 172 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 231
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
IP L+ +P++G LFR E+ P L++ A
Sbjct: 232 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 275
>gi|167566263|ref|ZP_02359179.1| type II/III secretion system protein [Burkholderia oklahomensis
EO147]
Length = 311
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 12/226 (5%)
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK------FVSEGGDFSVKGVLDRFSFET 258
+ + Q+S S P+ + G G +
Sbjct: 89 IDLQTGTGLTAQNSYANGSLNPTFGSISLSGNGDSVGVPASPLGLSLTAVLGDAGRYLLA 148
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
++ALE + RT A P +T + A + Q + ++ + + GV L
Sbjct: 149 RINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRV 206
Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
P V+ G +I L ++ V + ++P + +T + G +++AG
Sbjct: 207 LPMVVEEGGHTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 265
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
D G+P+LSK+P++GALFR++ TE TP +++P
Sbjct: 266 DSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIEP 311
>gi|167577363|ref|ZP_02370237.1| type II/III secretion system protein [Burkholderia thailandensis
TXDOH]
Length = 605
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 87/240 (36%), Gaps = 30/240 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
LKQ+G S + + + + + +
Sbjct: 369 ALKQLGVDWRAHNSHFDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLS 428
Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ ALE + RT A P +T + A + Q + ++
Sbjct: 429 LTAVLGDAGRYLLARIDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 488
Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ G +I L ++ V + ++P + +T
Sbjct: 489 --LYSISTGVSLRVLPMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAF 545
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G +++AG D + G+P+LSK+P+LGALFR++ +E TP +++P
Sbjct: 546 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 605
>gi|255531011|ref|YP_003091383.1| type II and III secretion system protein [Pedobacter heparinus DSM
2366]
gi|255343995|gb|ACU03321.1| type II and III secretion system protein [Pedobacter heparinus DSM
2366]
Length = 655
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 94/244 (38%), Gaps = 18/244 (7%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
V ++VT+ ++R+ + G + + S + + + + + +
Sbjct: 410 PMVLIEVTLLDIRKGHTTKTGIEAGLADSVVRTRGTVLSGVDMTLGAGSINNLLGKIGSN 469
Query: 254 F---------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---- 300
+F L+ALE I P L ++G +A+ + G Y T +
Sbjct: 470 SVFNIGKVTPNFYVKLNALEANNNIEIRQVPKLATLNGHTANLSIGTTRYYVTKTQNVFS 529
Query: 301 -----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
+ D + + +P V ++ L+I+ E+S+ + A P K
Sbjct: 530 SVNTQTVFTEQFNKVDANLAIGISPVVSGDDQVTLKIKVEISDFIGTPPANAPPPTSTSK 589
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
++ + + IVL G+ + + G+PLLS+IP+L +F + + + +
Sbjct: 590 FESIIRAHNEDMIVLGGMERSEKSDSGSGVPLLSRIPVLKWIFSSREQTKSKVVTLVFIK 649
Query: 416 PFLV 419
P ++
Sbjct: 650 PTII 653
>gi|254491741|ref|ZP_05104920.1| Bacterial type II and III secretion system protein [Methylophaga
thiooxidans DMS010]
gi|224463219|gb|EEF79489.1| Bacterial type II and III secretion system protein [Methylophaga
thiooxydans DMS010]
Length = 743
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/279 (19%), Positives = 105/279 (37%), Gaps = 31/279 (11%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
++++ ++I QV L++ I V F + S S+ A ++ G
Sbjct: 307 QLIHSMDIPVP-QVMLEMRILSVILGEDFNSIFNFELQPSGGNQSQQPALLGNNALLNSG 365
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-- 300
+ L LE +R L+ P + A + + A G + L
Sbjct: 366 ---TFVYEFLNSRLRANLEFLEENNRVRVLSNPMIVASNHRQAELFIGAETLLTDGFEFF 422
Query: 301 ------------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------------V 336
S V D G+ L TP + + L I+ E +
Sbjct: 423 PAIIDNGVVIQPSYVQAIVNREDIGITLRITPRINGDETVELLIEQENSTVNPGGGSVPI 482
Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
++ V + + + TV G T+ + GL++ + + +P+LS+IP+LG
Sbjct: 483 TDGNGTVQNLPVDTVDTARLTGTVMAKDGLTVAVGGLIRTSKNKNERKVPVLSEIPVLGR 542
Query: 397 LFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434
+FR++ + +ETE + TP ++ P L + D+ +
Sbjct: 543 IFRSTTESEQETETVLLITPRVMNVPEESEKLRQTDNRF 581
>gi|886477|emb|CAA90274.1| SepC [Escherichia coli]
Length = 512
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 96/247 (38%), Gaps = 23/247 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + +
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQVNISSSVISNA 327
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
+F ++AL++ + + L++P++ ++ A K S S+ + G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLRSITSG 385
Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
+L TP +L L ++ + +P + + T
Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G LA L K K+GIPLLS IP++G+LF ++ +
Sbjct: 446 EATLSAGKVYYLADLSKIKKVPSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505
Query: 419 VKPVAMR 425
+K +
Sbjct: 506 IKSASSE 512
>gi|257470110|ref|ZP_05634202.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC
49185]
Length = 563
Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats.
Identities = 58/303 (19%), Positives = 114/303 (37%), Gaps = 30/303 (9%)
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
+ + + +L + +S R + + + + + S+ +++ L+ Q
Sbjct: 228 VNISADEVSAILK---NSFGESIRVSSIPKMNIIIIVGKKDSTVSAVRLVKELD-KEIQQ 283
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFG--GKFVSEGGDFSVK 248
V + I +V ++ + +GF + S + G S G VS G ++
Sbjct: 284 VRITSQILDVTDNLFENLGFDWLYSNSGSIEKNKGLDISLIGKAAVEGAGVSFGSGINLI 343
Query: 249 GVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ + ++ L+ + A P++ G+ F + + T
Sbjct: 344 RQFNDGNDILGLGINLLQATQDLVISAMPSILVADGEEGEFKITEEVIVGEEKKENDNTE 403
Query: 307 VT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGDMP 349
T + G++L P + G I L++ EVS G +
Sbjct: 404 KTTYTPLFREAGIILKVKPLIKENGIIFLKVMIEVSNFRLKKSEQENISSDGGTYNSEGG 463
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
S R +TTV++ G TI + GL + +Q L IP L +P++ F+N RE T+
Sbjct: 464 SKIGRSIETTVKMKDGETIFIGGLKRAVVQNLDSRIPFLGTLPVINIFFKNQSVKREITD 523
Query: 410 IFI 412
I+I
Sbjct: 524 IYI 526
>gi|325280193|ref|YP_004252735.1| type II and III secretion system protein [Odoribacter splanchnicus
DSM 20712]
gi|324312002|gb|ADY32555.1| type II and III secretion system protein [Odoribacter splanchnicus
DSM 20712]
Length = 628
Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats.
Identities = 61/353 (17%), Positives = 124/353 (35%), Gaps = 50/353 (14%)
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
+YLFG + + + E+ AD I ++
Sbjct: 307 NGVYLFGAQE-------QQKILRTTAVIPLRYRTVENVPELIPEALKADMQIGAFAEQNS 359
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
+++ G R I ++ V + + +T++V I +
Sbjct: 360 LIVSGTSRQIASLRQFVGAIDRTVPL-------------------------ITIEVLIVD 394
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------RFS 255
++ L++ G + + + + + + +
Sbjct: 395 SKKSSLREAGITAGLGEKPVKTAGRLSPGVDFTLSAASVNRLIHSFNGFGSVNLGKVTPN 454
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--------- 306
F L ALE A + + P L+ ++G AS SG YK V ++ T
Sbjct: 455 FYLTLKALEEAGTLELRSTPKLSTLNGHEASLKSGETRYYKEVQNNIMGTQNPIQSESYT 514
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
+ + + L P V S G+I L I+ E SE P R + + + +
Sbjct: 515 WKSTEADLSLKIVPYVSSDGKITLTIEIEQSEFTAREEKDAPPGTATRSFKSRIRVDNED 574
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
++L G+ ++ ++ G+PL+++IP+L LF S N+ + ++ I P ++
Sbjct: 575 MVLLGGIDRNTREKGSSGLPLIARIPVLKWLFGVSTDNKVDEKLSIFIKPTVI 627
>gi|167948310|ref|ZP_02535384.1| General secretion pathway protein D [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 251
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 58/214 (27%), Positives = 89/214 (41%), Gaps = 11/214 (5%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADFGGKFVS 240
+ + L++ QV ++ TIAEV G + + G+ G +
Sbjct: 39 EATIRKLDVP-PMQVLIEATIAEVSLTNNLSYGVRWFLQGNMGGSDKWQGGLNLPLPSGV 97
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G FS+ + + + L ++++ L+ P + + QSASF G Q T SS
Sbjct: 98 SGSGFSLGILNSMDELKLFFNLLNAQSSVKFLSAPQIMVVDNQSASFRVGDQIPIITRSS 157
Query: 301 STGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSY 351
+ T V D G +L TP V G + L I EVS+P V G
Sbjct: 158 QSTTNPDAPIVTEVQFRDTGTLLTVTPRVNVGGMVTLEISQEVSKPGSAPAVGGGGNVPI 217
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
R D+TV + SG TI+L GL+ + K+GI
Sbjct: 218 AQRTVDSTVVVNSGQTIILGGLISETSNDTKDGI 251
>gi|45751689|emb|CAF21328.1| InvG protein [Burkholderia thailandensis]
Length = 277
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 22/284 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 7 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 66 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 114
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
++ P + A+F S K + T + YG +++ P + +
Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 172
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
IP L+ +P++G LFR E+ P L++ A
Sbjct: 233 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 276
>gi|167724326|ref|ZP_02407562.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei DM98]
Length = 308
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)
Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ Q G+ + + G + S G G + ++ALE +
Sbjct: 95 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 154
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
RT A P +T + A + Q + ++ + + GV L P V+ G
Sbjct: 155 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 212
Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L ++ V + ++P + +T + G +++AG D + G
Sbjct: 213 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 271
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 272 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 308
>gi|67639552|ref|ZP_00438400.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia mallei GB8 horse 4]
gi|238520110|gb|EEP83573.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia mallei GB8 horse 4]
Length = 380
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)
Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ Q G+ + + G + S G G + ++ALE +
Sbjct: 167 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 226
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
RT A P +T + A + Q + ++ + + GV L P V+ G
Sbjct: 227 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 284
Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L ++ V + ++P + +T + G +++AG D + G
Sbjct: 285 CTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 343
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 344 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 380
>gi|167915591|ref|ZP_02502682.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei 112]
Length = 322
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)
Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ Q G+ + + G + S G G + ++ALE +
Sbjct: 109 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 168
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
RT A P +T + A + Q + ++ + + GV L P V+ G
Sbjct: 169 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 226
Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L ++ V + ++P + +T + G +++AG D + G
Sbjct: 227 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 285
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 286 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 322
>gi|167907227|ref|ZP_02494432.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei NCTC 13177]
Length = 327
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)
Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ Q G+ + + G + S G G + ++ALE +
Sbjct: 114 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 173
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
RT A P +T + A + Q + ++ + + GV L P V+ G
Sbjct: 174 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 231
Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L ++ V + ++P + +T + G +++AG D + G
Sbjct: 232 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 290
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 291 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 327
>gi|323166425|gb|EFZ52190.1| hypothetical protein SS53G_3269 [Shigella sonnei 53G]
Length = 476
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
G + +L + NI ++ D+ V + ++
Sbjct: 119 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 178
Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
ET N + ++ L++A + L + I ++ + L +G
Sbjct: 179 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 233
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ SF FG F + LD F + AL + ++ P +
Sbjct: 234 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 288
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
A F + V +S+ YG +++ P S G+I + + E
Sbjct: 289 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 346
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ N +P K T +P G ++++ G + IP LS IP++G
Sbjct: 347 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 406
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
+F+ N P +K
Sbjct: 407 NVFKYKTSNISNIVRVFLIQPREIK 431
>gi|167820470|ref|ZP_02452150.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei 91]
gi|167828842|ref|ZP_02460313.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei 9]
Length = 315
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)
Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ Q G+ + + G + S G G + ++ALE +
Sbjct: 102 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 161
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
RT A P +T + A + Q + ++ + + GV L P V+ G
Sbjct: 162 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 219
Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L ++ V + ++P + +T + G +++AG D + G
Sbjct: 220 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 278
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 279 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 315
>gi|197335747|ref|YP_002157088.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11]
gi|197317237|gb|ACH66684.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11]
Length = 562
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 75/429 (17%), Positives = 144/429 (33%), Gaps = 53/429 (12%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
+ I ++ + + + V Q VL V R
Sbjct: 144 FQDIPVRHVLQLIADYNDFNLVVADSVTGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 199
Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
G +I + + + + L ++ + +++ +V
Sbjct: 200 ------VEGNVVLIAPKTELDAQEQQVLEQAQMASELAALSSEILSIKYAKASDIAELLV 253
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
G + + T + K +++ L+I + QV ++ I V
Sbjct: 254 GEGEITMLSSRGSITVDERTNSLLLRDLPENITVIKDIIDTLDIPIK-QVQIEARIVTVN 312
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRFSFETVLHA- 262
L ++G + IT ++ + + + V GG K + + L+
Sbjct: 313 EGNLDELGVRWGITNTNGSTTVGGSIESNLAAVGLYDGGGSDDKKSGNNSLPVDDFLNVN 372
Query: 263 ------------------------------LERATAIRTLAEPTLTAISGQSASFTSGGQ 292
L+ + ++ P L + + A G +
Sbjct: 373 LGLANPAASSIAFQVAKLGSDLLLDLELSALQAESKAEIISSPRLITTNKKPAYIEQGTE 432
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350
Y SS+GATSV+ + L TP + R+ L + P V+ G+ +
Sbjct: 433 IPYLEA-SSSGATSVSFKKAVLSLMVTPQITPDNRLVLDLTVTQDRPGQVVKTGTGEAVA 491
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
++ T V + +G T+VL G+ + + E +PLL +P+LGALFR S N + E+
Sbjct: 492 IDTQRIGTQVLVDNGETVVLGGIYQHSLSNSVEKVPLLGDLPLLGALFRRSSENIGKKEL 551
Query: 411 FIAATPFLV 419
I TP +V
Sbjct: 552 LIFVTPKVV 560
>gi|167743291|ref|ZP_02416065.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei 14]
gi|167850302|ref|ZP_02475810.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei B7210]
gi|167898903|ref|ZP_02486304.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei 7894]
Length = 318
Score = 124 bits (310), Expect = 5e-26, Method: Composition-based stats.
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)
Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ Q G+ + + G + S G G + ++ALE +
Sbjct: 105 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 164
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
RT A P +T + A + Q + ++ + + GV L P V+ G
Sbjct: 165 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 222
Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L ++ V + ++P + +T + G +++AG D + G
Sbjct: 223 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 281
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 282 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 318
>gi|312171371|emb|CBX79630.1| Type III secretory protein InvG [Erwinia amylovora ATCC BAA-2158]
Length = 589
Score = 124 bits (310), Expect = 5e-26, Method: Composition-based stats.
Identities = 50/342 (14%), Positives = 116/342 (33%), Gaps = 33/342 (9%)
Query: 94 VGQANVILIGHDGKQMLNLDILIERDI---AHLEMTLRRFIADSNIRVEM----VSDTVV 146
G A V+ + KQ + I + L+ A+ + + +
Sbjct: 223 PGVATVLNQLLNNKQANSGRNTTAAQITVDNSTQQALQAASANQDGNFRPLPIFAATSQA 282
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS----KKVMNLLNIAGEDQVTLKVTI 202
G I +++ + + ++ + +++ ++I + Q+ L + I
Sbjct: 283 ESGGNNDIAATEQNSVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIP-KQQIQLSLWI 341
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
+V +D + ++G + + +F + + F + A
Sbjct: 342 IDVSKDDINELGVRWQGSAKVGNGGITFNTSSLTQA-------------NSIHFLADVSA 388
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
L + ++ P + A F + K + T +S+ YG ++ P +
Sbjct: 389 LAQKGNAHVVSRPEILTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRL 446
Query: 323 LS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
I + + + ++ +P + T +P G ++++ G ++
Sbjct: 447 DQYQHEIEMILNIQDGGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRN 506
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+Q GIPLL IP +G LF S + ++ P L
Sbjct: 507 QDEQHSLGIPLLRDIPYMGRLFDYSYVSHKKMVRLFLIQPRL 548
>gi|292487263|ref|YP_003530135.1| type III secretory protein InvG [Erwinia amylovora CFBP1430]
gi|291552682|emb|CBA19727.1| Type III secretory protein InvG [Erwinia amylovora CFBP1430]
Length = 589
Score = 124 bits (310), Expect = 5e-26, Method: Composition-based stats.
Identities = 50/342 (14%), Positives = 115/342 (33%), Gaps = 33/342 (9%)
Query: 94 VGQANVILIGHDGKQMLNLDILIERDI---AHLEMTLRRFIADSNIRVEM----VSDTVV 146
G A V+ + KQ + I + L+ A+ + + +
Sbjct: 223 PGVATVLNQLLNNKQANSGRNTTAAQITVDNSTQQALQAASANQDGNFRPLPIFAATSQA 282
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS----KKVMNLLNIAGEDQVTLKVTI 202
G I ++ + + ++ + +++ ++I + Q+ L + I
Sbjct: 283 ESGGNNDIAAIEQNSVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIP-KQQIQLSLWI 341
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
+V +D + ++G + + +F + + F + A
Sbjct: 342 IDVSKDDINELGVRWQGSAKVGNGGITFNTSSLTQA-------------NSIHFLADVSA 388
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
L + ++ P + A F + K + T +S+ YG ++ P +
Sbjct: 389 LAQKGNAHVVSRPEILTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRL 446
Query: 323 LS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
I + + + ++ +P + T +P G ++++ G ++
Sbjct: 447 DQYQHEIEMILNIQDGGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRN 506
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+Q GIPLL IP +G LF S + ++ P L
Sbjct: 507 QDEQHSLGIPLLRDIPYMGRLFDYSYVSHKKMVRLFLIQPRL 548
>gi|218440223|ref|YP_002378552.1| type II and III secretion system protein [Cyanothece sp. PCC 7424]
gi|218172951|gb|ACK71684.1| type II and III secretion system protein [Cyanothece sp. PCC 7424]
Length = 734
Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----H 310
F L A + + L +PTL GQ A+ + + + + V T
Sbjct: 525 FLLTLEAQITSGNAKILTDPTLVVQEGQQATVKLTQKVVESVNTQVDPLSGVRTTTPVLQ 584
Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEV------SEPVIGVNAGDMPSYRVRKADTT--VE 361
D G+ L + G + L + + E G + + R+ T+ +
Sbjct: 585 DAGLTLTVEVDRIDDNGFVSLFVSPTIAAPGASQEFESGDGTTNQLTLLTRRELTSGLIR 644
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G T++L+G++ + Q +P+L IPILGALFR + + +E+ + TP ++
Sbjct: 645 MRDGQTLILSGIISESEQTTVSKVPILGDIPILGALFRRTDNSGSRSEVIVLLTPKIID 703
>gi|167923433|ref|ZP_02510524.1| type III secretion outer membrane pore, YscC/HrcC family protein
[Burkholderia pseudomallei BCC215]
Length = 319
Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats.
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)
Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ Q G+ + + G + S G G + ++ALE +
Sbjct: 106 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 165
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
RT A P +T + A + Q + ++ + + GV L P V+ G
Sbjct: 166 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 223
Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+I L ++ V + ++P + +T + G +++AG D + G
Sbjct: 224 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 282
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+P+LSK+P++GALFR++ +E TP +++P
Sbjct: 283 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 319
>gi|292900365|ref|YP_003539734.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291200213|emb|CBJ47341.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
Length = 584
Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats.
Identities = 50/342 (14%), Positives = 115/342 (33%), Gaps = 33/342 (9%)
Query: 94 VGQANVILIGHDGKQMLNLDILIERDI---AHLEMTLRRFIADSNIRVEM----VSDTVV 146
G A V+ + KQ + I + L+ A+ + + +
Sbjct: 218 PGVATVLNQLLNNKQANSGRNTTAAQITVDNSTQQALQAASANQDGNFRPLPIFAATSQA 277
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS----KKVMNLLNIAGEDQVTLKVTI 202
G I ++ + + ++ + +++ ++I + Q+ L + I
Sbjct: 278 ESGGNNDIAAIEQNSVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIP-KQQIQLSLWI 336
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
+V +D + ++G + + +F + + F + A
Sbjct: 337 IDVSKDDINELGVRWQGSAKVGNGGITFNTSSLTQA-------------NSIHFLADVSA 383
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
L + ++ P + A F + K + T +S+ YG ++ P +
Sbjct: 384 LAQKGNAHVVSRPEILTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRL 441
Query: 323 LS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
I + + + ++ +P + T +P G ++++ G ++
Sbjct: 442 DQYQHEIEMILNIQDGGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRN 501
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+Q GIPLL IP +G LF S + ++ P L
Sbjct: 502 QDEQHSLGIPLLRDIPYMGRLFDYSYVSHKKMVRLFLIQPRL 543
>gi|188534044|ref|YP_001907841.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
gi|188029086|emb|CAO96954.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
Length = 592
Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats.
Identities = 46/283 (16%), Positives = 109/283 (38%), Gaps = 26/283 (9%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIA 203
V + D + ++ T + + + ++ ++++ + Q+ L + I
Sbjct: 283 VFSSERPSAADIEAVRIVAYTDTNSLLVMGSERQVNFVEDLVKAIDVS-KRQIQLSLWII 341
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
++ + + ++G + S G + +F + F + AL
Sbjct: 342 DISKKEINELGVKWSGAGKVNNTGVTFNTSSLTPE-------------NSIHFLADVSAL 388
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
++ + + ++ P + A F + K + T +S+ YG ++ P L
Sbjct: 389 VKSGSAQVISRPEILTQENVPALFDNNSSFYAKLIGERT--SSLEKITYGTMISVLPR-L 445
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
+ G+ + + + + + +NA MP+ + T +P G ++++ G +D
Sbjct: 446 ATGQQEIEMILNIHDGTVPLNAQGEPDKFDSMPTTSNTQISTEARVPLGHSLLVGGYSRD 505
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+Q G+PLL IP LG +F S ++ + P L+
Sbjct: 506 QDEQHNIGVPLLRDIPYLGRIFNYSYKSQTKMVRIFLIHPELL 548
>gi|253581772|ref|ZP_04858996.1| general secretion pathway protein D [Fusobacterium varium ATCC
27725]
gi|251836121|gb|EES64658.1| general secretion pathway protein D [Fusobacterium varium ATCC
27725]
Length = 563
Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats.
Identities = 51/245 (20%), Positives = 90/245 (36%), Gaps = 26/245 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFAADFGGKFVSEGGDFS 246
QV + I +V ++ + +GF S S A VS G +
Sbjct: 282 QQVRITSQILDVTDNLFETLGFDWLYNNVGSVEKNSGLDISLIGKAALDSAGVSFGSGIN 341
Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ + + ++ L+ + A P++ G+ F + +
Sbjct: 342 LVRQFNNGNDVLGLGINLLQATQDLVISAMPSILVADGEEGEFKITEEVIVGEEKKENDN 401
Query: 305 TSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGD 347
T T + G++L P + G I L++ EVS G +
Sbjct: 402 TEKTTYTPLFREAGIILKVKPLIKENGTIFLKVMIEVSNFRLKKNEKENMISEGGTYNSE 461
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
S R +TTV++ G TI + GL + IQ L +P L +P++ F+N +E
Sbjct: 462 GGSKIGRSIETTVKMRDGETIFIGGLKRAVIQNLDSQVPFLGTLPVINIFFKNQSVKKEI 521
Query: 408 TEIFI 412
T+I+I
Sbjct: 522 TDIYI 526
>gi|308095376|ref|ZP_05905407.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466]
gi|308086743|gb|EFO36438.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466]
Length = 525
Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats.
Identities = 45/285 (15%), Positives = 98/285 (34%), Gaps = 36/285 (12%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + + T + ++++ L+I + QV
Sbjct: 243 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 301
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
++ I + + ++G + T + + +
Sbjct: 302 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGVG 361
Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ F V + + L AL++ + ++ P L + +
Sbjct: 362 IDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKP 421
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIG 342
A G + Y SS+GATSVT + L TP + R+ L + P V+
Sbjct: 422 AYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKVVK 480
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
G+ + ++ T V + +G T+VL G+ + I + +PL
Sbjct: 481 TGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPL 525
>gi|167615514|ref|ZP_02384149.1| type II/III secretion system protein [Burkholderia thailandensis
Bt4]
Length = 309
Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats.
Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 11/225 (4%)
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLDRFS--FETV 259
V + Q+S + P+ + G + S+ VL
Sbjct: 88 VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 147
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
+ ALE + RT A P +T + A + Q + ++ + + GV L
Sbjct: 148 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVL 205
Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
P V+ G +I L ++ V + ++P + +T + G +++AG D
Sbjct: 206 PMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 264
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G+P+LSK+P+LGALFR++ +E TP +++P
Sbjct: 265 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 309
>gi|172036496|ref|YP_001802997.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142]
gi|171697950|gb|ACB50931.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142]
Length = 778
Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats.
Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 15/221 (6%)
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G + + + ++ F + ++ + L
Sbjct: 527 GEPDTFERTFDPETGIVTTTVTPGSIATATGALPSFFQFPRRFLAQIETNIQSGNAKILT 586
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHF-TPTVLSPGR 327
+PTL GQ A+ + + + + V T D G+ L + G
Sbjct: 587 DPTLVVQEGQEATVKLTQKVIENITTQVDPLSGVRTTTPVLQDAGLTLAINVDKIDDNGY 646
Query: 328 IGLRIQTEVS--------EPVIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDI 378
I L + ++ + ++ R+ + + L G T++L+G++ +
Sbjct: 647 INLTVSPTIAAVGDVQQFDSGSDGGTNNLFLLNRRELSSGLIRLRDGQTLILSGIISESD 706
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
Q +PLL IP+LGALFR+ + TE+ + TP ++
Sbjct: 707 QSTTSKVPLLGDIPLLGALFRSQTDTSQRTEVIVLLTPQIL 747
>gi|120555550|ref|YP_959901.1| type II and III secretion system protein [Marinobacter aquaeolei
VT8]
gi|120325399|gb|ABM19714.1| type II and III secretion system protein [Marinobacter aquaeolei
VT8]
Length = 733
Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats.
Identities = 64/335 (19%), Positives = 116/335 (34%), Gaps = 32/335 (9%)
Query: 115 LIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
+ L L + + G + + +S S
Sbjct: 371 VQNTSAEELASLLSQLYGGNELAGSRSARSGESNTGTSNASDQETSTTRRAGSTVSVSTE 430
Query: 174 NQYANSSSKKVMNLLNIAGE---------------DQ---VTLKVTIAEVRRDILKQIGF 215
K N+L G Q V ++V +AEV + + +G
Sbjct: 431 VAGGRLVVDKNRNVLIFRGSGADWLKLREIAVELDKQVPSVLMEVVLAEVTLNDNQGMGV 490
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ S S + G G +++ VL+A + + P
Sbjct: 491 EWLARNSVGDLSGTLETLGGLGIGGRGFSYTLN---SAGQTRAVLNAFYDSNQAVIRSSP 547
Query: 276 TLTAISGQSASFTSGGQHL---------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+ SG++A+ G + +T + GV L P V + G
Sbjct: 548 KIMVKSGETATIEVGNEIPVLTSTRQSDTQTDGDTDVLQQFQYRKTGVDLTVEPIVQASG 607
Query: 327 RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+ +RI+ +SE +P+ R +T++ L GG++VL GL+ Q ++G+
Sbjct: 608 LVDIRIRQSLSETQDTSGGDSFLPTILNRAVETSLTLRDGGSVVLGGLISKTNSQGEQGV 667
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
P L K+P+LG LFR + TE+ + P++V+
Sbjct: 668 PWLGKLPLLGPLFRTDSDSTSTTELMVMVVPYVVR 702
>gi|317064333|ref|ZP_07928818.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC
49185]
gi|313690009|gb|EFS26844.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC
49185]
Length = 451
Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats.
Identities = 58/303 (19%), Positives = 114/303 (37%), Gaps = 30/303 (9%)
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
+ + + +L + +S R + + + + + S+ +++ L+ Q
Sbjct: 116 VNISADEVSAILK---NSFGESIRVSSIPKMNIIIIVGKKDSTVSAVRLVKELD-KEIQQ 171
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFG--GKFVSEGGDFSVK 248
V + I +V ++ + +GF + S + G S G VS G ++
Sbjct: 172 VRITSQILDVTDNLFENLGFDWLYSNSGSIEKNKGLDISLIGKAAVEGAGVSFGSGINLI 231
Query: 249 GVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ + ++ L+ + A P++ G+ F + + T
Sbjct: 232 RQFNDGNDILGLGINLLQATQDLVISAMPSILVADGEEGEFKITEEVIVGEEKKENDNTE 291
Query: 307 VT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGDMP 349
T + G++L P + G I L++ EVS G +
Sbjct: 292 KTTYTPLFREAGIILKVKPLIKENGIIFLKVMIEVSNFRLKKSEQENISSDGGTYNSEGG 351
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
S R +TTV++ G TI + GL + +Q L IP L +P++ F+N RE T+
Sbjct: 352 SKIGRSIETTVKMKDGETIFIGGLKRAVVQNLDSRIPFLGTLPVINIFFKNQSVKREITD 411
Query: 410 IFI 412
I+I
Sbjct: 412 IYI 414
>gi|323530312|ref|YP_004232464.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia sp. CCGE1001]
gi|323387314|gb|ADX59404.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia sp. CCGE1001]
Length = 610
Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 26/238 (10%)
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------------GG 243
+ LKQIG S + GG
Sbjct: 373 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLSDGTTVINTTPVGG 432
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ ++AL+++ + A P + ++ A + + ++
Sbjct: 433 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 492
Query: 304 ATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVE 361
+ + GV L P V GR +++ + + I ++P +T
Sbjct: 493 D--LYSVSTGVSLRVLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESF 550
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ G ++++AG D + G+P LSKIP++GALFR R E +P ++
Sbjct: 551 VGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRII 608
>gi|254253701|ref|ZP_04947018.1| type II and III secretion system protein [Burkholderia dolosa
AUO158]
gi|124898346|gb|EAY70189.1| type II and III secretion system protein [Burkholderia dolosa
AUO158]
Length = 620
Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 25/239 (10%)
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------DFGGKFVSEGGD 244
D L Q+G + S + G
Sbjct: 384 DDDALHQLGVDWTAHNSHIDVQTGTGTLAQSTYNGTLSQNFGQTALPGNVLAAATPVGAS 443
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ + AL++ A + A P + ++ A + Q ++G
Sbjct: 444 VAAVLGDAGRYLMARISALQQTKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGD 503
Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVEL 362
+ + G+ L P V+ GR +++ + + + ++P + +T +
Sbjct: 504 --LYSVSTGISLRVLPMVVEEDGRTRIKLDVAIQDGQLTDQTVSNLPVIQNSTINTQAFI 561
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
G +++AG D G+P LSKIP++GALFR + E +P ++ P
Sbjct: 562 EEGQALLIAGYRADSATMGVTGVPGLSKIPLIGALFRTDNRQKSHMERLFLLSPRVISP 620
>gi|172064938|ref|YP_001815650.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia ambifaria MC40-6]
gi|171997180|gb|ACB68097.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria MC40-6]
Length = 589
Score = 123 bits (308), Expect = 8e-26, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 25/239 (10%)
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------DFGGKFVSEGGD 244
D L+Q+G + S + G
Sbjct: 353 DDDALRQLGVDWTAHNSHIDVQTGTGTLGQNTYNGTLSQNFGQTALAGNVLAAATPVGAS 412
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ + AL+ A + A P + ++ A + Q ++G
Sbjct: 413 VAAVLGDAGRYLMARISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGD 472
Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVEL 362
+ + G+ L P V+ GR +++ + + + ++P + +T +
Sbjct: 473 --LYSVSTGISLRVLPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFI 530
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
G +++AG D G+P LSKIP++GALFR + E +P ++ P
Sbjct: 531 EEGQALLIAGYRADTATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589
>gi|307725648|ref|YP_003908861.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia sp. CCGE1003]
gi|307586173|gb|ADN59570.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia sp. CCGE1003]
Length = 610
Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 26/238 (10%)
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------------GG 243
+ LKQIG S + GG
Sbjct: 373 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLADGTTVINTTPVGG 432
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ ++AL+++ + A P + ++ A + + ++
Sbjct: 433 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 492
Query: 304 ATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVE 361
+ + GV L P V GR +++ + + I ++P +T
Sbjct: 493 D--LYSVSTGVSLRVLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESF 550
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ G ++++AG D + G+P LSKIP++GALFR R E +P ++
Sbjct: 551 VGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRII 608
>gi|159028225|emb|CAO88035.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 518
Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats.
Identities = 44/205 (21%), Positives = 78/205 (38%), Gaps = 19/205 (9%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-------SGGQHLYKTVSSSTGATSVT 308
F L A + + L +P+L GQ A S + + + T+
Sbjct: 306 FLMTLQASIQTGNAKILTDPSLVVQEGQQAVVKLTEKVLVSVETTIDTNSNGNVRTTTPV 365
Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYRVRKADTT 359
D G+ L + G I L + +++P + P
Sbjct: 366 FGDAGLTLTVDVNQIDDNGYISLNVAPTIAQPGPQIPFNSGGATINQLTPLITRELLSGL 425
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ L G +++L+G++++ Q + +P+L IPILGALFR+ +E+ I TP ++
Sbjct: 426 IRLRDGQSLILSGIIQERQQSSETKVPILGDIPILGALFRSRTNQNSRSEVIILLTPKII 485
Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFF 444
+ A L +Y DA
Sbjct: 486 EDSATSTLGI---NYQPGQDAAEVL 507
>gi|45751673|emb|CAF21320.1| InvG protein [Burkholderia thailandensis]
Length = 270
Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats.
Identities = 52/280 (18%), Positives = 104/280 (37%), Gaps = 22/280 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 5 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 63
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 64 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 112
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
++ P + A+F S K + T + YG +++ P + +
Sbjct: 113 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 170
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+ + + E S+ I ++ MP + +T +P ++++ G +DD+ +
Sbjct: 171 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 230
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
IP L+ +P++G LFR E+ P L++
Sbjct: 231 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLR 270
>gi|170698370|ref|ZP_02889444.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria IOP40-10]
gi|170136709|gb|EDT04963.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria IOP40-10]
Length = 589
Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 25/239 (10%)
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------DFGGKFVSEGGD 244
D L+Q+G + S + G
Sbjct: 353 DDDALRQLGVDWTAHNSHIDVQTGTGTLGQSTYNGTLSQNFGQTALAGNVLAAATPVGAS 412
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ + AL+ A + A P + ++ A + Q ++G
Sbjct: 413 VAAVLGDAGRYLMARISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGD 472
Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVEL 362
+ + G+ L P V+ GR +++ + + + ++P + +T +
Sbjct: 473 --LYSVSTGISLRVLPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFI 530
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
G +++AG D G+P LSKIP++GALFR + E +P ++ P
Sbjct: 531 EEGQALLIAGYRADSATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589
>gi|115360614|ref|YP_777751.1| YscC/HrcC family type III secretion outer membrane protein
[Burkholderia ambifaria AMMD]
gi|115285942|gb|ABI91417.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia ambifaria AMMD]
Length = 561
Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 25/239 (10%)
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------DFGGKFVSEGGD 244
D L+Q+G + S + G
Sbjct: 325 DDDALRQLGVDWTAHNSHIDVQTGTGTLGQNTYNGTLSQNFGQTALAGNVLAAATPVGAS 384
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ + AL+ A + A P + ++ A + Q ++G
Sbjct: 385 VAAVLGDAGRYLMARISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGD 444
Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVEL 362
+ + G+ L P V+ GR +++ + + + ++P + +T +
Sbjct: 445 --LYSVSTGISLRVLPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFI 502
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
G +++AG D G+P LSKIP++GALFR + E +P ++ P
Sbjct: 503 EEGQALLIAGYRADSATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 561
>gi|323186572|gb|EFZ71915.1| hypothetical protein ECOK1357_0057 [Escherichia coli 1357]
Length = 367
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
G + +L + NI ++ D+ V + ++
Sbjct: 10 GVATVVERLLNNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 69
Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
ET N + ++ L++A + L + I ++ + L +G
Sbjct: 70 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 124
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ SF FG F + LD F + AL + ++ P +
Sbjct: 125 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 179
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
A F + V +S+ YG +++ P S G+I + + E
Sbjct: 180 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 237
Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ N +P K T +P G ++++ G + IP LS IP++G
Sbjct: 238 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 297
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
+F+ N P +K
Sbjct: 298 NVFKYKTSNISNIVRVFLIQPREIK 322
>gi|307149984|ref|YP_003885368.1| type II and III secretion system protein [Cyanothece sp. PCC 7822]
gi|306980212|gb|ADN12093.1| type II and III secretion system protein [Cyanothece sp. PCC 7822]
Length = 728
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 19/225 (8%)
Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAI 269
++ + + + + G + L F L A +
Sbjct: 473 IPYARPSFGTFNNPFQPGVSAATYDAATGQRTFTYQLPNLFQFPQKFLATLQASITSGNA 532
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHF-TPTVL 323
+ L +PTL GQ A+ + + + + V T D G+ L +
Sbjct: 533 KILTDPTLVVQEGQQATVKLTQKVVESVNTQVDPLSGVRTTTPVLQDAGLTLTVEVDRID 592
Query: 324 SPGRIGLRIQTEV------SEPVIGVNAGDMPSYRVRKADTT--VELPSGGTIVLAGLLK 375
G + L + + G + + + R+ T+ + + G T++L+G++
Sbjct: 593 DNGFVSLFVSPTIAAPGATQTFDSGNGSNNTLTLLSRREMTSGLIRMRDGQTLILSGIIS 652
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ + +P+L IPILGALFR + N +E+ + TP ++
Sbjct: 653 ETERTTVTKVPILGDIPILGALFRRTDNNGNRSEVIVLLTPKIID 697
>gi|292488059|ref|YP_003530936.1| type III secretory protein InvG [Erwinia amylovora CFBP1430]
gi|292899270|ref|YP_003538639.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291199118|emb|CBJ46232.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291553483|emb|CBA20528.1| Type III secretory protein InvG [Erwinia amylovora CFBP1430]
Length = 588
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/292 (16%), Positives = 105/292 (35%), Gaps = 25/292 (8%)
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQ 195
+ + V+ + + S +V + + S V +L+ + Q
Sbjct: 273 INDLPGEEVVADNSESARVSSDSVNIVAYSDTNSLLVMGTERQVSFVEDLIRAIDIAKRQ 332
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ L + I ++ ++ + ++G Q S + S F S +
Sbjct: 333 IQLSLWIIDISKEDINELGVQWSGSTKISSTGVIFGTSSLTPESS-------------IN 379
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
F + AL ++ + + ++ P + A F + + V +S+ YG +
Sbjct: 380 FLANVSALVKSGSAQVISRPEILTQENVPALFDNNSSFYARLVGERN--SSLEKITYGTM 437
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTVELPSGGTI 368
+ P L+ + + + ++ + +A +P + T +P G ++
Sbjct: 438 ISVLPR-LAERQHEIEMILDIHDGTAPRDASGDSAHIDSLPVISNTQISTEARVPLGYSL 496
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++ G ++ + GIPLL IP LG LF S ++ + P L+
Sbjct: 497 LVGGYSRNQDEYHDIGIPLLRDIPYLGKLFDYSYKSQTKMVRLFLIHPRLLD 548
>gi|171915159|ref|ZP_02930629.1| putative outer membrane protein (ComQ) [Verrucomicrobium spinosum
DSM 4136]
Length = 809
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 64/332 (19%), Positives = 115/332 (34%), Gaps = 92/332 (27%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------------ITGSSSGPSKS 229
+ ++ A QV ++V + E+ LK++GF G + +
Sbjct: 463 DEYVDQAVNATPKQVEIQVRMIEINETRLKELGFDWLLGQFNVPGSDRVFAGGAGTADPN 522
Query: 230 FAADFGGKFVSEG------------------------------GDFSVKGVLDRFSFETV 259
A F G+ V+ G G F+V GV F+ V
Sbjct: 523 DPAPFPGQSVTSGLRSSGAILGVPSIDGLIGRATVPSANSKSPGFFAVSGVFTDPQFQVV 582
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------------------ 301
L L+++ + LA PT+ SGQ A+ T + Y T
Sbjct: 583 LRGLKQSKGVDILAAPTVITKSGQRANVTVAKEFRYPTEFDPPQIPQNLSANVNGVQYVA 642
Query: 302 -------TGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTE--------------VSEP 339
+ T+ D G+ L P V S R + L + +
Sbjct: 643 NFAPITPSTPTAFEKRDVGITLEVEPVVGSGNRTVDLNLVPSSVEFEGFIDYGTDIQNSA 702
Query: 340 VIGVNAGDM----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+G+ D+ P +R K T+V + G T+VL G+ + ++ + +P++
Sbjct: 703 PVGIGGADVFFNVPNDILQPIFRTNKITTSVSVWDGNTVVLGGVTFEKRHKIDDKVPVVG 762
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+P++G F++ N E + T ++ P
Sbjct: 763 DLPLVGRAFQSKVSNVERKNVLFFVTVRVIDP 794
>gi|298489848|ref|YP_003720025.1| type II and III secretion system protein ['Nostoc azollae' 0708]
gi|298231766|gb|ADI62902.1| type II and III secretion system protein ['Nostoc azollae' 0708]
Length = 818
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 43/251 (17%), Positives = 86/251 (34%), Gaps = 12/251 (4%)
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----ETVL 260
+ + + S+ + AD + + + F L
Sbjct: 564 ISSASSNPLQPGFTSITQSTNNIITINADGTTSVTQGTAGTATASLPSLYKFPKRFLASL 623
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-T 319
A + + L +PTL GQ A + + T + + G+ L
Sbjct: 624 QAQVQTGNAKILTDPTLIVQEGQDAVVKLTSEVYGGIRITDTLREPI-IKEAGLTLAVKV 682
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADT-TVELPSGGTIVLAGLLKD 376
+ G + L + VS + G++ R + + L G T++L+G+++D
Sbjct: 683 ERIDDNGFVSLSVAPTVSAFANSASTPDGNIALLAARSLQSGILRLRDGQTLILSGIIQD 742
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
+ +P+L IP+LG+LFR + E E+ + TP ++ +Y+
Sbjct: 743 QDRTTISKLPILGDIPLLGSLFRKTNRQNERREVIVLLTPQVMDDSERSAYGY---NYNP 799
Query: 437 EDDAKAFFFNR 447
+ R
Sbjct: 800 SSQVRQILERR 810
>gi|91070466|gb|ABE11376.1| putative general (type II) secretion pathway protein D precursor
[uncultured Prochlorococcus marinus clone HOT0M-10G7]
Length = 640
Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/280 (17%), Positives = 94/280 (33%), Gaps = 41/280 (14%)
Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ-------IGFQHSITGSSSGPSKSFAAD 233
++ + L++ + QV L V I +V + I +S +
Sbjct: 360 AETFIKSLDVRHK-QVALTVKIIDVSLTKSDIKENVFELLTGDTRIISNSGLGILTSNLG 418
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT--------------- 278
S ++ G + + F L A + LA PTL
Sbjct: 419 AINPGDSARVSNALTGGVGQGGFMNWLEAKIDNNNAKILASPTLILGEDGNALSSGAAAV 478
Query: 279 ------AISGQSASFT-------SGGQHLYKTVSSSTGATSVTTHDYGVVLHFT-PTVLS 324
A G+ + ++ + + G+ +
Sbjct: 479 DDTLSQATIGRPYKNEGFIKVGETVITSFEQSSNEGVTTCTAQEGTAGITFGAKLEKIDD 538
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADT-TVELPSGGTIVLAGLLKDDIQQ 380
G + + +S V RK DT ++ + +G T++L G+L+D
Sbjct: 539 NGYVTFALSPAISSVTSTVEIAGCGIQNTLSVRKLDTGSIRVQNGETLILTGVLQDSDTV 598
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+P+L IPI G++FR+S +++ E+ I TP ++K
Sbjct: 599 TTSKVPILGDIPIFGSIFRSSATQKKKNELIILVTPKILK 638
>gi|170690596|ref|ZP_02881763.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia graminis C4D1M]
gi|170145031|gb|EDT13192.1| type III secretion outer membrane pore, YscC/HrcC family
[Burkholderia graminis C4D1M]
Length = 609
Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats.
Identities = 41/238 (17%), Positives = 80/238 (33%), Gaps = 26/238 (10%)
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------------GG 243
+ LKQIG S + GG
Sbjct: 372 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLSDGTTVINTTPLGG 431
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ ++AL+++ + A P + ++ A + + ++
Sbjct: 432 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 491
Query: 304 ATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVE 361
+ + GV L P V+ GR +++ + + I ++P +T
Sbjct: 492 D--LYSVSTGVSLRVLPLVVEESGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESF 549
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ G ++++AG D + G+P LSKIP++G LFR R E +P ++
Sbjct: 550 VGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGGLFRYRDDQRSHMERLFLLSPRII 607
>gi|110639568|ref|YP_679778.1| type II general secretion pathway (GSP) D protein [Cytophaga
hutchinsonii ATCC 33406]
gi|110282249|gb|ABG60435.1| type II general secretion pathway (GSP) D protein [Cytophaga
hutchinsonii ATCC 33406]
Length = 656
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 21/246 (8%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------GKFVSEGG 243
V ++V I EV ++ + + G + + S + S G F++ G
Sbjct: 411 PMVMIEVIIMEVLKNRMVKTGIKAGLNDSLATTQTSGTFLPGLDVKLSTSTINDFINGLG 470
Query: 244 DFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
S+ + SF L ALE + + P L+ ++G A+ + G Y+ + +T
Sbjct: 471 IGSITNLGSVTPSFYMTLSALETNNNVEIKSMPKLSTLNGHDANMSIGQTVYYEVQTQNT 530
Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
+ L P V ++ L I+ + NA P+
Sbjct: 531 LGSLTTNTITTVQYQSVQANQTLSIKPLVSGDDQVTLTIEVNQTSFAKS-NAAGPPNTTT 589
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
+ + + + + IVL GL K EG P+LS+IP++ LF + ++ ++ + +
Sbjct: 590 SQFKSIIRVRNEEMIVLGGLEKISKSIDTEGTPILSRIPVIKLLFSSKTKSKSKSILVLF 649
Query: 414 ATPFLV 419
P ++
Sbjct: 650 IKPIII 655
>gi|285018275|ref|YP_003375986.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
GPE PC73]
gi|283473493|emb|CBA15996.1| probable xanthomonas secretion apparatus protein [Xanthomonas
albilineans]
Length = 626
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 59/377 (15%), Positives = 124/377 (32%), Gaps = 44/377 (11%)
Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
+ L+ ++ ++D +V P ADV+ ++ G ++ G + +
Sbjct: 227 VPLHNTFVVNRRYKIRDEMVKVPGVADVI----HELF------GSSS----GAHPQSTPS 272
Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
+++ L + S + L G R + AV +
Sbjct: 273 GSSVLDMQQDVPADVLNLPLPKS-----SDAKAEDLSGRDRMVAMKGEAVWDVRMVPNPD 327
Query: 172 G------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
++ ++ +++A + Q+ L + I +V R L +G +
Sbjct: 328 DNSILLYGPSAHVELMERAIHAVDVA-KRQIELSLWIIDVDRQKLNALGIDWQSSARYGS 386
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ S + L+ F + AL + ++ P + A
Sbjct: 387 FTMSANSPQMAS-------------LNGIKFLATVSALSKRGLANIVSRPIVLTEENVPA 433
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIG 342
F + Y+ V A S+ YG ++ P + G + + + +
Sbjct: 434 IFDNSHTQYYQLV--GERAVSLEHFTYGTMVSVLPRLTQDGEVEMIVTVRDGQSQNSSTA 491
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
N +P + T +P +++L G D + IP LSK+P++G LFR +
Sbjct: 492 KNTTVIPEVSDTQISTVARVPKFKSLLLGGSTIDRHENDTSYIPGLSKLPVVGRLFRLDK 551
Query: 403 FNREETEIFIAATPFLV 419
E P ++
Sbjct: 552 TITEHMVRLFLIQPRVL 568
>gi|226227920|ref|YP_002762026.1| hypothetical protein GAU_2514 [Gemmatimonas aurantiaca T-27]
gi|226091111|dbj|BAH39556.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 735
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/307 (16%), Positives = 107/307 (34%), Gaps = 73/307 (23%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------------- 224
+ L++ QV +K I V R ++ IG + + +
Sbjct: 423 LQQLDVRTP-QVAIKAKIIFVNRTGIQDIGLAYDLGTGNKQFFQQLVPRTDPNTLTPVDT 481
Query: 225 ------------------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
G + + A+ + L R+ L
Sbjct: 482 DGDGVPDAMGGGSPYQGPARINLGGNAIAGIANANNAIKPNALNLIYSTALGRYQLTAFL 541
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------------------ 302
+AL+ ++ +EP++T ++ +SA G + + + +S
Sbjct: 542 NALQTSSLADVQSEPSITILNNRSAEIFVGQEIPIRVIDASAGGQGGGGGGGGGGGGGAA 601
Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
+V+ + G+ L TP + + + L I+ E S I + +
Sbjct: 602 GQPNAAAFFPRATVSKEEAGIKLSVTPQITNNKMVMLNIKAENSSAEIASTDVGV-IFNR 660
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
++A++ V + G V+ GL + + + GIP+L +P +G +F + N + ++ I
Sbjct: 661 QRAESQVLVADGEAAVIGGLTVTETTRFRSGIPVLMNLPFVGRIFSQNTKNETKRDLLIL 720
Query: 414 ATPFLVK 420
TP ++
Sbjct: 721 VTPHILD 727
>gi|312172187|emb|CBX80444.1| Type III secretory protein InvG [Erwinia amylovora ATCC BAA-2158]
Length = 517
Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats.
Identities = 47/291 (16%), Positives = 101/291 (34%), Gaps = 23/291 (7%)
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQ 195
+ + V+ + + S +V + + S V +L+ + Q
Sbjct: 202 ITDLPGEEVVADNSESARVSSDSVNIVAYSDTNSLLVMGTERQVSFVEDLIRAIDIAKRQ 261
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ L + I ++ ++ + ++G Q S + S F S +
Sbjct: 262 IQLSLWIIDISKEDINELGVQWSGSTKISSTGVIFGTSSLTPESS-------------IN 308
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
F + AL ++ + + ++ P + A F + + V +S+ YG +
Sbjct: 309 FLANVSALVKSGSAQIISRPEILTQENVPALFDNNSSFYARLVGERN--SSLEKITYGTM 366
Query: 316 LHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIV 369
+ P + I + + + G +P + T +P G +++
Sbjct: 367 ISVLPRLAERQHEIEMILDIHDGTAPRDASGGSAHIDSLPVISNTQISTEARVPLGYSLL 426
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G ++ + GIPLL IP LG LF S ++ + P L+
Sbjct: 427 VGGYSRNQDEYHDIGIPLLRDIPYLGKLFDYSYKSQTKMVRLFLIHPRLLD 477
>gi|254575124|gb|ACT68025.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
DC283]
Length = 602
Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/358 (15%), Positives = 122/358 (34%), Gaps = 34/358 (9%)
Query: 67 QDVLVSDPTKADV--VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
+DV +S P A V + + + G++ G + + A
Sbjct: 227 RDVPISVPGVATVLNQLLNNTSCREGGRSA---------PAGAIITVDNDTRSALEAASA 277
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
F + + + + + Q V S+T ++ S + +
Sbjct: 278 TQKGNFPPLPSFNAAPAARGRAVDRDIPSQQTIN-IVGYSDTNSLLIQGSERQVSFVEDL 336
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
+N ++I + Q+ L + I ++ +D + ++G + +F S
Sbjct: 337 VNAIDIP-KQQIQLSLWIIDISKDDINELGIRWQGAAKMGNTGVTFNTSSLTPESS---- 391
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
F + AL + + + ++ P + A F + K + T
Sbjct: 392 ---------LHFLADVSALAKKGSAQVVSRPEILTQENVPALFDNNSSFYAKLIGERT-- 440
Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADT 358
+S+ YG ++ P + I + + + ++ N +P + T
Sbjct: 441 SSLEKITYGTMISVLPRLAQRQQEIEMILNIQDGGLLLNADGSTENIDSLPMVNNTQIST 500
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+P G ++++ G +D + + GIPLL IP +G LF S + ++ P
Sbjct: 501 EARVPVGYSLLVGGYSRDQDEHHRLGIPLLRDIPFVGKLFDYSYTSHKKMVRLFLIQP 558
>gi|326423830|ref|NP_760303.2| type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6]
gi|319999200|gb|AAO09830.2| Type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6]
Length = 594
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 46/372 (12%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ G +I + + ER L I + + +++ + V
Sbjct: 223 RVEGNVVLIAPQDELDLREKQQLEKERLAEELGSLKSEIIKVNFAKASDIAEMINGKESV 282
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+ + T ++++N L+I + QV ++ I V L
Sbjct: 283 SMLSERGSVAIDERTNSLLLRELPENIEVIREIINSLDIPVK-QVQIEARIVTVNEGNLD 341
Query: 212 QIGFQHSITGSSSGPSKSFA---------------------------------------- 231
++G + T + + +
Sbjct: 342 ELGVRWGFTSINGSTTVGGSIENNLATIGLYNAGSGSGSGDSGSGGSGSEGGSASIDDFL 401
Query: 232 --ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ F V + + L AL+R + ++ P L + + A
Sbjct: 402 NVNLAATSANASSIAFQVAKLGSDLLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQ 461
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGD 347
G + Y SS+GAT+V+ + L TP + R+ L + P + G+
Sbjct: 462 GTEIPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEIVKTGTGE 520
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S N +
Sbjct: 521 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNTTDKVPLLGDLPLLGALFRRSYENVGK 580
Query: 408 TEIFIAATPFLV 419
E+ I TP ++
Sbjct: 581 RELLIFVTPKVI 592
>gi|37681174|ref|NP_935783.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016]
gi|37199925|dbj|BAC95754.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016]
Length = 594
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 46/372 (12%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ G +I + + ER L I + + +++ + V
Sbjct: 223 RVEGNVVLIAPQDELDLREKQQLEKERLAEELGSLKSEIIKVNFAKASDIAEMINGKESV 282
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+ + T ++++N L+I + QV ++ I V L
Sbjct: 283 SMLSERGSVAIDERTNSLLLRELPENIEVIREIINSLDIPVK-QVQIEARIVTVNEGNLD 341
Query: 212 QIGFQHSITGSSSGPSKSFA---------------------------------------- 231
++G + T + + +
Sbjct: 342 ELGVRWGFTSINGSTTVGGSIENNLATIGLYNAGSGSGSGDSGSGGSGGEGGSASIDDFL 401
Query: 232 --ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ F V + + L AL+R + ++ P L + + A
Sbjct: 402 NVNLAATSANASSIAFQVAKLGSDLLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQ 461
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGD 347
G + Y SS+GAT+V+ + L TP + R+ L + P + G+
Sbjct: 462 GTEIPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEIVKTGTGE 520
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S N +
Sbjct: 521 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNTTDKVPLLGDLPLLGALFRRSYENVGK 580
Query: 408 TEIFIAATPFLV 419
E+ I TP ++
Sbjct: 581 RELLIFVTPKVI 592
>gi|332535460|ref|ZP_08411243.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Pseudoalteromonas haloplanktis ANT/505]
gi|332035105|gb|EGI71619.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Pseudoalteromonas haloplanktis ANT/505]
Length = 639
Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats.
Identities = 59/278 (21%), Positives = 109/278 (39%), Gaps = 35/278 (12%)
Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--------------HSITGSS 223
+ + KV++ + + QV + V + EV + LKQ G +
Sbjct: 335 SVAGGKVLSSIEVEDLPQVRVSVQLYEVNQRRLKQWRPDISVLSNGYEKEAGLFGRDGMT 394
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
S S + + + +++ +F+ + + LE+ RTL+ PT+T ++G+
Sbjct: 395 ERESGSATIENALQLIGGQLTNNLQLSTSQFAIDMLFSLLEQEGISRTLSRPTITVLAGE 454
Query: 284 SASFTSGGQHLYKTVSSSTGATS------------VTTHDYGVVLHFTPTVLSPGRIGLR 331
SA F GG+ T S +G TS +GV L+ V RI L
Sbjct: 455 SAVFKVGGEVPVPTSYSPSGITSGQQGSSGSVFSGTEFKSFGVELNVRAMVDDKDRITLD 514
Query: 332 IQTEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ +S P ++ + ++ R T+ L G +++ GL+ D
Sbjct: 515 LNPVISLPDTTLTAEIAQSTGSSLNSSAFNTRSMQTSTRLKDGQPLIIGGLISTDNNASH 574
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ +P + +LG L + + E+ I TP LV+
Sbjct: 575 DFVPDGNGNSMLGKLSETTSKSENNRELIIVVTPNLVR 612
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 1/133 (0%)
Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
D+ + + T DV V + R + + K +G+ ++++ D + + D +
Sbjct: 49 FTRDISRIALGHETTLDVNVVNGRELLILAKKLGRTSMMVWYDDKSS-ETFLLGVTEDYS 107
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
LE L D + + VVL G V TI A E ++ +L S +
Sbjct: 108 VLENALNDIHPDVQLTIAPDRHAVVLRGEVPTINYRHAAYEAAKNYLYASSSQASQPVIT 167
Query: 182 KKVMNLLNIAGED 194
+ +
Sbjct: 168 SNPNQGMFNSLAQ 180
>gi|195952904|ref|YP_002121194.1| type II and III secretion system protein [Hydrogenobaculum sp.
Y04AAS1]
gi|195932516|gb|ACG57216.1| type II and III secretion system protein [Hydrogenobaculum sp.
Y04AAS1]
Length = 653
Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats.
Identities = 50/247 (20%), Positives = 96/247 (38%), Gaps = 24/247 (9%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--------KFVSEGGDFSV 247
+ + V E+ +D KQ+G + G + ++F F
Sbjct: 406 IQIDVKAVEISKDYQKQLGLGIGGAYAGRGITILNTSNFNPISPLANAFSFTPGSSPIVT 465
Query: 248 KGVLDRFS--------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
++ + + ALE +++ + TL A++ Q S T G ++
Sbjct: 466 ATPINAPNGLMSGIYSEGKFHVLGFEIQALESINKAKSVFKSTLLAMNDQPTSLTQGIEY 525
Query: 294 LYKTVSS-STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
+ T+S+ +VT + + TP VL G+I L I + + + + A P+
Sbjct: 526 PFTTISTPGQAVPTVTLQNVLNSIKVTPQVLPNGKILLNINIQ-NMSLGPLAANGQPTIN 584
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
++ L G T+ + G+ + +GIP L K+PI+G + ++ T +FI
Sbjct: 585 QNSNSLSIVLSDGATLAIGGVGLKNESNGLQGIPGLDKVPIIGNVGMTKNESKNNTNLFI 644
Query: 413 AATPFLV 419
T V
Sbjct: 645 FITAKRV 651
>gi|320155169|ref|YP_004187548.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O]
gi|319930481|gb|ADV85345.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O]
Length = 594
Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats.
Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 46/372 (12%)
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ G +I + + ER L I + + +++ + V
Sbjct: 223 RVEGNVVLIAPQDELDLREKQQLEKERLAEELGSLKSEIIKVNFAKASDIAEMINGKESV 282
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+ + T ++++N L+I + QV ++ I V L
Sbjct: 283 SMLSERGSVAIDERTNSLLLRELPENIEVIREIINSLDIPVK-QVQIEARIVTVNEGNLD 341
Query: 212 QIGFQHSITGSSSGPSKSFA---------------------------------------- 231
++G + T + + +
Sbjct: 342 ELGVRWGFTSINGSTTVGGSIENNLATIGLYNAGSGSGSGDSGSGGSGSEGGSASIDDFL 401
Query: 232 --ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ F V + + L AL+R + ++ P L + + A
Sbjct: 402 NVNLAATSANASSIAFQVAKLGSDLLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQ 461
Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGD 347
G + Y SS+GAT+V+ + L TP + R+ L + P + G+
Sbjct: 462 GTEIPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEIVKTGTGE 520
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S N +
Sbjct: 521 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNTTDKVPLLGDLPLLGALFRRSYENVGK 580
Query: 408 TEIFIAATPFLV 419
E+ I TP ++
Sbjct: 581 RELLIFVTPKVI 592
>gi|126659012|ref|ZP_01730153.1| general secretion pathway protein D [Cyanothece sp. CCY0110]
gi|126619669|gb|EAZ90397.1| general secretion pathway protein D [Cyanothece sp. CCY0110]
Length = 743
Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 17/221 (7%)
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G + + + G +E G S F + ++ + L
Sbjct: 494 GEPDTFERTVEDGIITTTVTPGSIATAEAGLPSFFQF--PRRFLAQIETNIQSGNAKILT 551
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHF-TPTVLSPGR 327
+PTL GQ A+ + + + + V T D G+ L + G
Sbjct: 552 DPTLVVQEGQEATVKLTQKVIENITTQVDPLSGVRTTTPVLQDAGLTLAINVDKIDDNGY 611
Query: 328 IGLRIQTEVS--------EPVIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDI 378
I L + ++ + ++ R+ + + L G T++L+G++ +
Sbjct: 612 INLTVSPTIAAVGDVQAFDAGADGGTNNLFLLNRRELSSGLIRLRDGQTLILSGIISESD 671
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
Q +PLL IP+LGALFR+ + TE+ + TP ++
Sbjct: 672 QSTTSKVPLLGDIPLLGALFRSQTDTSQRTEVIVLLTPQIL 712
>gi|22127359|ref|NP_670782.1| hypothetical protein y3485 [Yersinia pestis KIM 10]
gi|108810715|ref|YP_646482.1| outer membrane secretin family protein [Yersinia pestis Nepal516]
gi|229840586|ref|ZP_04460745.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229842864|ref|ZP_04463016.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Orientalis str.
India 195]
gi|229900910|ref|ZP_04516034.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis Nepal516]
gi|270487710|ref|ZP_06204784.1| conserved hypothetical protein [Yersinia pestis KIM D27]
gi|294502758|ref|YP_003566820.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003]
gi|21960443|gb|AAM87033.1|AE013951_8 hypothetical [Yersinia pestis KIM 10]
gi|108774363|gb|ABG16882.1| outer membrane secretin family protein [Yersinia pestis Nepal516]
gi|229682249|gb|EEO78341.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis Nepal516]
gi|229690131|gb|EEO82188.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Orientalis str.
India 195]
gi|229696952|gb|EEO86999.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|262360790|gb|ACY57511.1| hypothetical protein YPD4_0602 [Yersinia pestis D106004]
gi|262364735|gb|ACY61292.1| hypothetical protein YPD8_0602 [Yersinia pestis D182038]
gi|270336214|gb|EFA46991.1| conserved hypothetical protein [Yersinia pestis KIM D27]
gi|294353217|gb|ADE63558.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003]
gi|320016745|gb|ADW00317.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 149
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 9/154 (5%)
Query: 322 VLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
+ RI + + EVS N PS R+RKA+TTVEL G + +L GL+
Sbjct: 1 MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTE 60
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
++ + IP + IP+LGALFRN++ R ++E+ + AT LVKPV+ R + PD +
Sbjct: 61 RESLKKIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTS 118
Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
+ FF N + + + GFI
Sbjct: 119 TVERFF----NLTNIKDAKRRKQAKEFLQKGGFI 148
>gi|284052867|ref|ZP_06383077.1| type II and III secretion system protein [Arthrospira platensis
str. Paraca]
Length = 785
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 12/206 (5%)
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
D + F + L A + + L +PTL G++AS
Sbjct: 561 TDGSLTALGSTTAAVFPFFQYPRRFLSTLQAQIVSGRAKILTDPTLVVQEGETASVQLVQ 620
Query: 292 QHLYKTVSSSTGAT-------SVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV 343
+ L ++ T G+ L + G + + I EVS P V
Sbjct: 621 EVLQSRTTTFTDTPSGTRETIQPQLVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQV 680
Query: 344 NAGD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
G + R + + L G T++++G+++D + IPLL +PILG+LFR
Sbjct: 681 GTGGDDFVLQIFRRNLQSGRIRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFR 740
Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
S + E E+ + TP ++
Sbjct: 741 RSSTSSERAEVIVLVTPNILDDSDRS 766
>gi|108809091|ref|YP_653007.1| putative outer membrane secretin family protein [Yersinia pestis
Antiqua]
gi|108781004|gb|ABG15062.1| putative outer membrane secretin family protein [Yersinia pestis
Antiqua]
Length = 149
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 9/154 (5%)
Query: 322 VLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
+ RI + + EVS N PS R+RKA+TTVEL G + +L GL+
Sbjct: 1 MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTE 60
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
Q+ + IP + IP+LGALFRN++ R ++E+ + AT LVKPV+ R + PD +
Sbjct: 61 QESLKKIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTS 118
Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
+ FF N + + + GFI
Sbjct: 119 TVERFF----NLTNIKDAKRRKQAKEFLQKGGFI 148
>gi|116620187|ref|YP_822343.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116223349|gb|ABJ82058.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 872
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 67/323 (20%), Positives = 111/323 (34%), Gaps = 54/323 (16%)
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
VR+I D QR + + + + ++K+++ L+ + +V + + + E
Sbjct: 289 VRSIADIQRFFPYNSQNAIIAKGSADQVALAEKILHDLD-KPKSEVVVDIIVMEASSVYT 347
Query: 211 KQIGFQHSITGSSSGPSKSFAADF------------------------------------ 234
+Q+ + G + G + + +
Sbjct: 348 RQLTAAIAAQGLNVGVNFTPRSGLQVVNNPTTTGGTTTSGTGTGTATGTGTGTGTGTGTG 407
Query: 235 GGKFVSEGGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTS 289
S G L F L + + L P L A+ A+
Sbjct: 408 TSSVSGSAIPLSNLGHLSSADFSTTIPAATLQLVLSDGNTKVLQSPQLRAVDNVKATLKI 467
Query: 290 GGQHLYKTVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
G + T S G T T D GV + TP V G + + I ++S
Sbjct: 468 GDRQPTATGSFQPGIGGVGINPLVNTQFTYIDVGVNVELTPRVHDNGDVSMHIDLDISSV 527
Query: 340 VIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
VN D P RK + + G +LAGL K + K GIP L+ +PI+G L
Sbjct: 528 TGHVNLGGIDQPIIGQRKVSHDIRMHEGSVQLLAGLTKWQDTKTKTGIPGLANVPIIGRL 587
Query: 398 FRNSRFNREETEIFIAATPFLVK 420
F +RE E+ IA P +V+
Sbjct: 588 FSGESVDRERQELMIALIPHIVR 610
>gi|116620720|ref|YP_822876.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116223882|gb|ABJ82591.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 527
Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats.
Identities = 57/328 (17%), Positives = 118/328 (35%), Gaps = 44/328 (13%)
Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
D +D + +++ A + + +++V+L V + ++ E
Sbjct: 217 DTTNPQDFNSVITAVQQAFAIEKVAFDTQNNSVILRDRVSKVIPARMMFE---------- 266
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ +V +++ EV + G + T S +F
Sbjct: 267 ---------------ELMGPRAEVEIELRFLEVSLNDAVTYGVDLANTFSVIPLQNAFNF 311
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
K ++ F + + + A ++ + L + ++ Q A+ G +
Sbjct: 312 AQLAKSLTSSSLFGINI------LSSAIVATMSNSSGKLLLSSEVRSVDNQPATLHVGDR 365
Query: 293 HL------------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
+ ++ T S T D G+ L TP V + L I +E + +
Sbjct: 366 YPVLTSGYYGPQSFTNGANAYTPPPSFTFEDLGLTLKITPAVHGTESVTLDIDSEF-KVL 424
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
G + +P R + +L G +AGL+ D + GI +S++P+LG L
Sbjct: 425 AGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVLGQLTST 484
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLS 428
N++E+++ I P L+ P + LS
Sbjct: 485 HTRNKDESQVLILMRPRLLTPPPGQALS 512
>gi|116071978|ref|ZP_01469246.1| possible general (type II) secretion pathway protein D precursor
[Synechococcus sp. BL107]
gi|116065601|gb|EAU71359.1| possible general (type II) secretion pathway protein D precursor
[Synechococcus sp. BL107]
Length = 744
Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 11/201 (5%)
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD-- 311
SF + + A+ +++ +TLA+PTL GQ A +G + ++ T S
Sbjct: 545 NSFYSYVEAVIESSSAKTLAQPTLLVQEGQEAEVQTGTSVITSVSTTDTSNGSTQFEYSR 604
Query: 312 --YGVVLHF-TPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADT-TVELPSG 365
G+ L + G + L I E+S EP N + + R + ++ L
Sbjct: 605 ENAGLSLKVKVSKIDDNGFVSLNIDPEISVPEPAGESNGVAIFNIVGRSLSSGSIRLRDR 664
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
T++L G+++D +++ P+L +P++G LFR++ R + E+ I TP +V
Sbjct: 665 QTLILTGVIQDQDKEIARKWPILGDLPVIGQLFRSTDSQRSKNELVILVTPMIVDDEMGG 724
Query: 426 DLSRPDDHYSVEDDAKAFFFN 446
Y
Sbjct: 725 SYGY---GYRPSTREARQLMG 742
>gi|237737584|ref|ZP_04568065.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC
9817]
gi|229419464|gb|EEO34511.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC
9817]
Length = 551
Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats.
Identities = 46/250 (18%), Positives = 98/250 (39%), Gaps = 24/250 (9%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVSEGGDFSVK--- 248
+Q+ + I +V ++ + +GF +G++ G + + G +S G
Sbjct: 277 EQIRIDAQILDVTDNLFETLGFNWIYDNSGNTEGNNSWSMSLLGNSSISGIGSIYSSSIA 336
Query: 249 ----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ LE + + P++ + G+ SF + +
Sbjct: 337 ISKQFNSGNDILNLGINLLESTQDLVVSSRPSILVLDGEEGSFKVAEEVIVGEQREEDED 396
Query: 305 TS-----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------ 353
T+ + G++L TPT+ G + L++ E+S + VN +
Sbjct: 397 TNKVITTPIFREAGIILKATPTIRKDGWVILKVLIEISNFKLKVNKDESEESGTYNSEGG 456
Query: 354 ----RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
R +TT+++ +G TI + GL K + L IP +P++ F+N + E ++
Sbjct: 457 SKVGRSIETTIKIKNGETIFIGGLKKATVHNLDSKIPYFGTLPMINFFFKNQNISHEISD 516
Query: 410 IFIAATPFLV 419
I++ +V
Sbjct: 517 IYVKMKVNIV 526
>gi|116074048|ref|ZP_01471310.1| possible general (type II) secretion pathway protein D precursor
[Synechococcus sp. RS9916]
gi|116069353|gb|EAU75105.1| possible general (type II) secretion pathway protein D precursor
[Synechococcus sp. RS9916]
Length = 670
Score = 119 bits (299), Expect = 9e-25, Method: Composition-based stats.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 11/201 (5%)
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309
SF L A ++T+ +TLA PTL G+SA +G + ++ + T
Sbjct: 471 NSFYGYLEAAIQSTSAKTLASPTLLVQEGESAKVETGTSVITGVKATETANGSTQFENTR 530
Query: 310 HDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SYRVRKADT-TVELPSG 365
+ G+ L + G + L++ VS P +P + R + V L
Sbjct: 531 ENAGLTLGVDIEKIDDNGFVTLKVFPSVSIPQEAGFQEGVPIYNITGRSLSSGRVRLRDR 590
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
T+VL G++++ ++ P+L +P+LG +FR + RE+ E+ I TP +V A
Sbjct: 591 QTLVLTGVIRESDIEVVRKWPILGDLPVLGQMFRKTESEREKQELVILVTPSIVDDEAGG 650
Query: 426 DLSRPDDHYSVEDDAKAFFFN 446
+
Sbjct: 651 AYGY---GFRPSTKEARQLMG 668
>gi|33866866|ref|NP_898425.1| general (type II) secretion pathway protein D precursor
[Synechococcus sp. WH 8102]
gi|33639467|emb|CAE08851.1| possible general (type II) secretion pathway protein D precursor
[Synechococcus sp. WH 8102]
Length = 344
Score = 119 bits (299), Expect = 9e-25, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 8/176 (4%)
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD- 311
SF + + A+ ++++ +TLA+PTL G++A +G + ++ T S +
Sbjct: 143 DDSFYSYVEAMIQSSSAKTLAQPTLLVQEGETAMVETGQSVITGVSATETANGSTQFQNT 202
Query: 312 ---YGVVLHF-TPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADT-TVELPS 364
G+ + + G I L ++ E+S P + + + RK ++ ++ L
Sbjct: 203 RENAGLTVDLSVSKIDDNGFISLELKPEISVPIPAGTQEGVGIFNIQARKLESGSIRLRD 262
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G +++L G++ D +Q P+L +P++G LFR S +RE+ E+ I TP ++
Sbjct: 263 GQSLILTGVITDSDRQQVRKWPILGDMPLIGQLFRQSSSSREKNELVIIVTPTILD 318
>gi|62287139|sp|Q9ZHF3|PILQ_NEIME RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
Flags: Precursor
gi|4027986|gb|AAC96097.1| secretin precursor [Neisseria meningitidis H44/76]
Length = 766
Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats.
Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 21/231 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
K+++ L++ QV ++ I E + +G + TG +++ A +G G
Sbjct: 511 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 569
Query: 243 GDF-----------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
GD + L A E + +TLA P + + + A
Sbjct: 570 GDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKPKTLANPRVLTQNRKEA 629
Query: 286 SFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
SG + + S S G +T+ + L TP + G+I + ++ P
Sbjct: 630 KIESGYEIPFTVTSRSGGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPRQCA 689
Query: 344 NAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
+ + + +T + +GGT+++ G+ ++D +PLL+ P+
Sbjct: 690 SGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLATSPL 740
>gi|309586|gb|AAA25456.1| outer membrane protein [Neisseria gonorrhoeae]
Length = 711
Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 89/231 (38%), Gaps = 21/231 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
K+++ L++ QV ++ I E + +G + TG +++ A +G G
Sbjct: 456 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 514
Query: 243 GDF-----------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
GD + L A E + +TLA P + + + A
Sbjct: 515 GDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKTKTLANPRVLTQNRKEA 574
Query: 286 SFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
SG + + + S G +T+ + L T + G+I + ++ P
Sbjct: 575 KIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLTVTANITPDGQIIMTVKINKDSPRQCA 634
Query: 344 NAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
+ + + + +T + +GGT+++ G+ +++ +PLL+ P+
Sbjct: 635 SGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLATSPL 685
>gi|297621836|ref|YP_003709973.1| putative type III secretion protein SctC [Waddlia chondrophila WSU
86-1044]
gi|297377137|gb|ADI38967.1| putative type III secretion protein SctC [Waddlia chondrophila WSU
86-1044]
Length = 1115
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/269 (14%), Positives = 84/269 (31%), Gaps = 39/269 (14%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
QV +++ I E + G + + A G + + + G
Sbjct: 799 RPLRQVFIEMLILETTLEDSLDYGVAWGSHSGGGSTATAQAYIGGASPLVGALNRDLSGT 858
Query: 251 LDR---------------------------FSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ ++ A + + P + +
Sbjct: 859 NTPDASNLITDVGYTLGIIGRRLTHNGTQFATLGALVTAQHNRQNSKVILNPKIITEDNK 918
Query: 284 SASFTSG-----GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
+A G + S T+ D G + TP + + + L I+ EVS
Sbjct: 919 TAELFVGINTRFQTNSISNDEGSVITTNFEYRDVGTTIRVTPLIGNGDIVTLEIEEEVSR 978
Query: 339 PVIG-------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
+ + P+ + + TTV +P ++++GL++D+ + P L I
Sbjct: 979 VAPQAVQGGSDIQDPNAPTTSISRTSTTVHVPDRHFVIISGLIQDEKIHSRNQFPCLGGI 1038
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
PI+GA F + + + P ++
Sbjct: 1039 PIIGAAFSAKINDDVKRTQMLFIRPQIID 1067
>gi|281356803|ref|ZP_06243294.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
gi|281316930|gb|EFB00953.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
Length = 850
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/336 (15%), Positives = 101/336 (30%), Gaps = 86/336 (25%)
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------- 219
+++ L+ + + +++ EV + L+++GF S+
Sbjct: 495 SVKNTPENLRRLDELIRQLDAIEKPLIMVEIKGIEVSEEDLQELGFDWSMSAIGSVKTDA 554
Query: 220 ----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF------------------- 256
++ + V EG ++D ++F
Sbjct: 555 SGNMVSGWLFGQGGGQSNPATRTVREGITGVNTALIDGWNFFPSLFGNVHPFGSDVPLNI 614
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVT-- 308
++AL R T TLA P + + + AS + + G ++T
Sbjct: 615 SLTINALSRNTRTETLAAPKVMTSNDRMASVRMVKSYQFPEDWDAYEIEDDDGNYTITAP 674
Query: 309 ------THDYGVVLHFTPTVLSPG-RIGLRIQTEVS-----------------------E 338
D G++ TP V + I L + V+ +
Sbjct: 675 VPSFGDETDIGIIFDVTPKVNADNYTITLEVNPTVTNYIGRDEYNIQVKGILTEYVRATD 734
Query: 339 PVIGVNAGDM---------------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
P G G P R V + G TI+L G++ +
Sbjct: 735 PSTGAFTGGTTLKQTKTTDRFNVWKPIISRRNVKVNVNVYDGETIILGGMIDATTTTRTD 794
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P+L +P++G F++ N + + T LV
Sbjct: 795 KWPILGDLPLVGRFFQSQSENITRNNLLLFVTTRLV 830
>gi|187735593|ref|YP_001877705.1| type II and III secretion system protein [Akkermansia muciniphila
ATCC BAA-835]
gi|187425645|gb|ACD04924.1| type II and III secretion system protein [Akkermansia muciniphila
ATCC BAA-835]
Length = 907
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/388 (14%), Positives = 108/388 (27%), Gaps = 138/388 (35%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH-------------------------------SI 219
QV + EV ++ +++GF
Sbjct: 515 GESQQVRIMTKFVEVTQENTEELGFDWIVTPFSVSNDRSTFLGGGTNYGTGSTSDSFTQS 574
Query: 220 TGSSSGPSKSFAADFGGKFVSEG--------------------------------GDFSV 247
G +G + +D V+ G G S+
Sbjct: 575 PGGVTGWPVNSGSDTINGLVTGGNRTGDYAITKNSVDNLLNSTNRSEASQKNAAPGIMSL 634
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------ 301
G+ D SF+ ++ L + L P++TA SG++A + Y T
Sbjct: 635 TGIYDEGSFQMLMRGLSQKKGSDVLTAPSVTAKSGETAKIEIIREFWYPTEYEPPELPNS 694
Query: 302 --------------------------------------TGATSVTTHDYGVVLHFTPTVL 323
GV L PT+
Sbjct: 695 VGNSGYNNGYGYGNNGNIVDGLLGNQIQPQISSFPVTPATPGVFEMKPVGVTLEVVPTIG 754
Query: 324 SPGRIG-LRIQTEVSEP------------------------VIGVNAGDMPSYRVRKADT 358
I L + + E + N + P + R +T
Sbjct: 755 DNKYIIDLNFKPSIVEFEGFVNYGSPIQSTGVGSDGKPMSLTLTENRIEQPIFSKRSVET 814
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
++ + G T+ + GL+ +++Q +++ +P+ +P++G FR++ N + + I T +
Sbjct: 815 SLFIYDGHTVAIGGLITENVQTVEDKVPIFGDLPLIGRFFRSNSDNHIKKNLMIFVTGQI 874
Query: 419 VK----PVAMRDLSRPD--DHYSVEDDA 440
+ PV L + +
Sbjct: 875 IDATGQPVRGNALPTAAAPESALPASEG 902
>gi|303252187|ref|ZP_07338355.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302648970|gb|EFL79158.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
Length = 190
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 5/168 (2%)
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
+SG++A GG+ + G SV ++G+ L V RI L + VS
Sbjct: 2 LSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKSDRIRLVLSQSVSTI 60
Query: 340 VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ +P + R++ +T E+ +G + +++GLL + + +P+L IPILGA
Sbjct: 61 AGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKVPVLGDIPILGAF 120
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
FRN+ +RE E+ + AT LVKPV + P + + FF
Sbjct: 121 FRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFFN 166
>gi|320539812|ref|ZP_08039471.1| putative predicted fimbrial transporter [Serratia symbiotica str.
Tucson]
gi|320029998|gb|EFW12018.1| putative predicted fimbrial transporter [Serratia symbiotica str.
Tucson]
Length = 403
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 90/248 (36%), Gaps = 25/248 (10%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGR--NQYANSSSKKVMNLLNIAGED------------- 194
V + A E++E+ +Q G + + + K N L I
Sbjct: 118 SVTLALKNADAAEIAESLNAQRGALLGERGSVVADKRTNALLIRDTAPVLALLKKRVAEM 177
Query: 195 -----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK- 248
QV L I + + L ++G + + +F + S
Sbjct: 178 DIPLAQVQLASYIVTINSENLHELGVRWGLAADERPAQPLRLDNFNVGLTQQKSTLSAGF 237
Query: 249 --GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
L L ALE+ + +A P L Q+AS G + Y+ S ++GATS
Sbjct: 238 HLARLSGRLLNLELTALEQENRVEIIANPRLLTAHMQTASIKQGTEIPYEVSSGASGATS 297
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPS 364
V + + + TP VL GRI L + + P + G+ + ++ T + +
Sbjct: 298 VEFKEAVLGMEVTPRVLPDGRITLTLYISQNMPGRSVSRGEGEALTIDKQEIKTQITVKD 357
Query: 365 GGTIVLAG 372
G TIVL G
Sbjct: 358 GETIVLGG 365
>gi|145597786|ref|YP_001161862.1| outer membrane secretin family protein [Yersinia pestis Pestoides
F]
gi|229837374|ref|ZP_04457537.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis Pestoides A]
gi|145209482|gb|ABP38889.1| outer membrane secretin family protein [Yersinia pestis Pestoides
F]
gi|229705497|gb|EEO91507.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis Pestoides A]
Length = 149
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 9/154 (5%)
Query: 322 VLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
+ RI + + EVS N PS R+RKA+TTVEL G + +L GL+
Sbjct: 1 MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTE 60
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
++ + IP + +P+LGALFRN++ R ++E+ + AT LVKPV+ R + PD +
Sbjct: 61 RESLKKIPFIGDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTS 118
Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
+ FF N + + + GFI
Sbjct: 119 TVERFF----NLTNIKDAKRRKQAKEFLQKGGFI 148
>gi|62297323|sp|P35819|PILQ_NEIGO RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
AltName: Full=Outer membrane protein omc; Flags:
Precursor
gi|1173875|gb|AAC43603.1| PilQ [Neisseria gonorrhoeae]
gi|1589217|prf||2210365A pilQ gene
Length = 720
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 89/231 (38%), Gaps = 21/231 (9%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
K+++ L++ QV ++ I E + +G + TG +++ A +G G
Sbjct: 465 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 523
Query: 243 GDF-----------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
GD + L A E + +TLA P + + + A
Sbjct: 524 GDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKTKTLANPRVLTQNRKEA 583
Query: 286 SFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
SG + + + S G +T+ + L T + G+I + ++ P
Sbjct: 584 KIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLTVTANITPDGQIIMTVKINKDSPRQCA 643
Query: 344 NAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
+ + + + +T + +GGT+++ G+ +++ +PLL+ P+
Sbjct: 644 SGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLATSPL 694
>gi|32471479|ref|NP_864472.1| general secretion pathway protein D [precursor] [Rhodopirellula
baltica SH 1]
gi|32443320|emb|CAD72153.1| general secretion pathway protein D [Precursor] [Rhodopirellula
baltica SH 1]
Length = 1265
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 58/323 (17%), Positives = 100/323 (30%), Gaps = 64/323 (19%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
AV ++T + +++++ L+ V +K IAEV+ D +IG + +
Sbjct: 730 AVAEAQTNSVLLSVSPRIYEEVRQLIDRLD-RRPPMVLIKTLIAEVQLDDGFEIGGEFGL 788
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---------------------------- 251
S + F+ G
Sbjct: 789 QDSLLFDRGKATGAIATGNPASDPGFNFGGTSVNLPNANSFGQENLASKGITSFGAGASQ 848
Query: 252 ----------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
S L L A ++ L+ P + G
Sbjct: 849 LTQLSGLNSGGFVFSAASESVNLFLRTLRVANRLQILSRPEIMTADNTEGFVQVGQSFPR 908
Query: 296 KTVSSSTGATS---------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-- 344
T S TG T + + G++L TP V + G I + I S+
Sbjct: 909 PTELSFTGGTGGTASQPIIGIEDEEIGIILRVTPRVGADGMIFMAIDASRSDINNNEGQI 968
Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+P+ +A T+ G T+V GL++ Q +P LS IP++G
Sbjct: 969 IGAFQDDVPIFVPAIDRTQAQATITAFDGQTVVFGGLIQKVRQNRTRRVPYLSNIPVVGT 1028
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
F+ + +E+ + TP LV
Sbjct: 1029 FFKFDSEIEQRSELLVVMTPILV 1051
>gi|291569731|dbj|BAI92003.1| bifunctional pilus assembly protein PilQ/type II secretion pathway
protein D [Arthrospira platensis NIES-39]
Length = 785
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 12/206 (5%)
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
D + F + L A + + L +PTL G++AS
Sbjct: 561 TDGTLSALGSTTVSVFPFFQYPRRFLSTLQAQIVSGRAKILTDPTLVVQEGETASVQLVQ 620
Query: 292 QHLYKTVSSSTGAT-------SVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV 343
+ L ++ T G+ L + G + + I EVS P V
Sbjct: 621 EVLQSRTTTFTDTPSGTRETIQPQLVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQV 680
Query: 344 NAGD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
G + R + + L G T++++G+++D + IPLL +PILG+LFR
Sbjct: 681 GTGGDDFVLQIFRRNLQSGRIRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFR 740
Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
S + E E+ + TP ++
Sbjct: 741 RSSTSSERAEVIVLVTPSILDDSDRS 766
>gi|171909982|ref|ZP_02925452.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM
4136]
Length = 632
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 25/228 (10%)
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G + ++ S+ F + V D + ++HALE+ + +
Sbjct: 306 GVPGTSNYDNASTSEGFKTTASSSEHNSLYQDGPGLVFDAMQVQAIVHALEQNGIVSQES 365
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----------------------THD 311
PT+ + + + T + S T + +
Sbjct: 366 CPTIITEDNEQGIISIVDRFPIVTTNVSQTDAGQTITDEVRYKVDKDDPDAMEEPDKSRE 425
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
GV L TPT+L G + ++++ V+ E V G N P AD +P+G ++
Sbjct: 426 IGVTLTVTPTMLPDGTVRMKLRPRVAKIVELVQGNNGNVYPRVSESTADAISRIPAGQSL 485
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+L G K +P+L +P+L LFR E+ + TP
Sbjct: 486 ILGGFYDYSSSNNKNKVPVLGNVPVLKHLFRYKEKTMEKVSLVFIITP 533
>gi|171915532|ref|ZP_02931002.1| fimbrial assembly protein [Verrucomicrobium spinosum DSM 4136]
Length = 634
Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 59/321 (18%), Positives = 104/321 (32%), Gaps = 81/321 (25%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+++ A QV +++ + EV +K++G + + S+ A GG+ V
Sbjct: 300 DSLVDQAVNATAKQVEIQIRMVEVSDARVKELGIDWLLGQFNVPGSEKIFASGGGQSVPG 359
Query: 242 ------------------------------------------GGDFSVKGVLDRFSFETV 259
G F+V GVL F+ V
Sbjct: 360 EVLPFAGRTVTDGLRSATEVLGLRSSGTRIGRALVPGADAKSPGAFAVSGVLTDPQFQGV 419
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------------TGA 304
L L ++ I +A PTL SGQ A+ + Y + +
Sbjct: 420 LRGLNQSKGIDVMATPTLFTKSGQRAALKMVKEFRYPKEYDAPETPTRTTGGGLGKPSSP 479
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----------------- 347
S D G+V P + I L + E ++ G
Sbjct: 480 RSFEKRDVGIVFEVEPVIGQNKVIELSLSPSFLEFEGFIDYGQDFQNSTTDRLTGQPVYF 539
Query: 348 -------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
P +R + T V + G T+VL G + + + +P++ +P++G F++
Sbjct: 540 TVENQILQPIFRANRISTAVSIWDGCTVVLGGAAFEKRFRADDKVPVVGDLPLIGRTFQS 599
Query: 401 SRFNREETEIFIAATPFLVKP 421
E T + T +V P
Sbjct: 600 KVKQVERTNVLFFVTARIVDP 620
>gi|310767456|gb|ADP12406.1| Type III secretion apparatus [Erwinia sp. Ejp617]
Length = 588
Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/299 (18%), Positives = 107/299 (35%), Gaps = 28/299 (9%)
Query: 128 RRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
+ F+ D SN VE + G DS V S+T + S + ++
Sbjct: 270 KSFMPDFSNEEVEADNH-----GSDTASNDSVNIVAYSDTNSLLVMGTERQVSFVEDIIQ 324
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
++IA + Q+ L + I ++ ++ + ++G Q S + F S
Sbjct: 325 AIDIA-KRQIQLSLWIIDISKEDINELGVQWSGSAKIGSTGVIFGTSSLTPESS------ 377
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+F + AL + + + ++ P + A F + K V +S
Sbjct: 378 -------INFLADVSALVESGSAQVISRPEILTQENVPALFDNNSSFYAKLVGERN--SS 428
Query: 307 VTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTV 360
+ YG ++ P + I + + + +P + T
Sbjct: 429 LEKITYGTMISVLPRLAEHQQEIEMILNIHDGNVPRDASGASAHVDSLPVISNTQISTEA 488
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P G ++++ G ++ + GIPLL IP LG +F S ++ + P L+
Sbjct: 489 RVPLGYSLLVGGYSRNQDEYHNIGIPLLRDIPYLGKIFDYSYTSQTKMVRLFLIHPELL 547
>gi|186685099|ref|YP_001868295.1| type II and III secretion system protein [Nostoc punctiforme PCC
73102]
gi|186467551|gb|ACC83352.1| type II and III secretion system protein [Nostoc punctiforme PCC
73102]
Length = 792
Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 19/215 (8%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATSVT 308
L A + + L +PTL GQ+A+ + + +T S
Sbjct: 581 LLASLQAQVQNGNAKILTDPTLIVQEGQTANVNLTQEVVGNIKREIVRDSNLATETISAE 640
Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADT-T 359
G+ L + G + L + V P V G + + R ++ +
Sbjct: 641 KDRVGLTLAVKVERIDDNGFVSLSVAPVVKAPQAPATINVGGGGSQQIFLVSERSLNSGS 700
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ L G T++L+G+++D + IP+L +P++G+LFR++ + + E+ + TP ++
Sbjct: 701 IRLRDGQTLILSGIIQDSDRTTVSKIPILGDLPLIGSLFRSTNRSNQRNEVIVLLTPQIM 760
Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
+Y+ + + R K+ G
Sbjct: 761 DDTENSSYGY---NYTPSPEVRQILERRGLKVPGR 792
>gi|118579256|ref|YP_900506.1| type II and III secretion system protein [Pelobacter propionicus
DSM 2379]
gi|118501966|gb|ABK98448.1| type II and III secretion system protein [Pelobacter propionicus
DSM 2379]
Length = 767
Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/308 (16%), Positives = 99/308 (32%), Gaps = 57/308 (18%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+V L++ + EV+ + + F S S + S
Sbjct: 311 RQVPEVLLEMKVLEVQLNDKFESAFTISTISGGSQTGPDDGQVANPLNTAASAVGSTLLG 370
Query: 251 LDRFSFE----TVLHALERATAI-----------RTLAEPTLTAISGQSASFTSGGQHL- 294
+ F+ L + T+A P L A + A G + +
Sbjct: 371 MGNFALNSESTLTYQFLSSDLRLRLQLLQQNNNLTTIATPMLMAANNHPARLFIGEETVL 430
Query: 295 ---------------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
V+++ T G L P++ + + +RI E S
Sbjct: 431 TTGFTTMTSTSTTTSGVVVNNTLPVPVTETKSVGNTLTILPSINADRSVVMRIVHENSSV 490
Query: 340 VIGVNAGDMP-----------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
+ +P + K + TV G T+ + G+++ +I + +PLL
Sbjct: 491 KTNGASIPLPVGTTVQTVSIDTVNTSKLEGTVLAQDGMTVAVGGMMRTNITDYESKVPLL 550
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
IP LG F+ + + +TE+ + TP++++ + +A R+
Sbjct: 551 GDIPYLGFFFKQKQKIKTKTELVLLITPYILQA---------------PNLGEAVTRRRL 595
Query: 449 NKIYGPKE 456
N + G
Sbjct: 596 NDLSGNTG 603
>gi|259908646|ref|YP_002649002.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
gi|224964268|emb|CAX55775.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
gi|283478618|emb|CAY74534.1| Type III secretory protein InvG [Erwinia pyrifoliae DSM 12163]
Length = 588
Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 54/299 (18%), Positives = 107/299 (35%), Gaps = 28/299 (9%)
Query: 128 RRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
+ F+ D SN VE + G DS V S+T + S + ++
Sbjct: 270 KSFMPDFSNEEVEADNH-----GSDTASNDSVNIVAYSDTNSLLVMGTERQVSFVEDIIQ 324
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
++IA + Q+ L + I ++ ++ + ++G Q S + F S
Sbjct: 325 AIDIA-KRQIQLSLWIIDISKEDINELGVQWSGSAKIGSTGVIFGTSSLTPESS------ 377
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+F + AL + + + ++ P + A F + K V +S
Sbjct: 378 -------INFLADVSALVESGSAQVISRPEILTQENVPALFDNNSSFYAKLVGERN--SS 428
Query: 307 VTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTV 360
+ YG ++ P + I + + + +P + T
Sbjct: 429 LEKITYGTMISVLPRLAEHQQEIEMILNIHDGNVPRDASGASAHVDSLPVISNTQISTEA 488
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P G ++++ G ++ + GIPLL IP LG +F S ++ + P L+
Sbjct: 489 RVPLGYSLLVGGYSRNQDEYHNIGIPLLRDIPYLGKIFDYSYTSQTKMVRLFLIHPELL 547
>gi|320174026|gb|EFW49196.1| General secretion pathway protein D [Shigella dysenteriae CDC
74-1112]
Length = 164
Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
+L TP + + + I+ EVS+ + + + RK TTV G IVL GL+
Sbjct: 1 MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
D + +PLL IP++G LF+++ +E+ + + P +++ D
Sbjct: 59 DDQAGESVAKVPLLGDIPLIGKLFKSTADKKEKRNLMVFIRPTILRDGMAAD 110
>gi|262277342|ref|ZP_06055135.1| putative outer membrane protein [alpha proteobacterium HIMB114]
gi|262224445|gb|EEY74904.1| putative outer membrane protein [alpha proteobacterium HIMB114]
Length = 544
Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 56/275 (20%), Positives = 105/275 (38%), Gaps = 30/275 (10%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI----------------GF 215
+ ++K+++ ++I + V ++ I K+ G
Sbjct: 273 TGTKQQLDQTEKLLDKIDIERKS-VMIEAFIVNAEDGFAKKFDANLEMISSTAAGDFRGG 331
Query: 216 QHSITGSSSG-----------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
S G+ G + S +AD + G + G + R + A
Sbjct: 332 NQSGIGTIIGATNPQGNQLEVGTPSPSADTSLTAPTLQGGTLIIGSIGRALLSATIAASV 391
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
T T++ P + AI GQ A+ + G Q + +S A T D+ + TPT++
Sbjct: 392 SDTNSETISNPKIFAIDGQQATISQGTQQVRSVPASGGDAGGFETLDFTLNFGVTPTIVG 451
Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
++ L+I G + P +TV L +G +L G+ K+ Q
Sbjct: 452 D-KVRLQISLANDSLGQGGTDANTPK-NTENVTSTVVLNNGDVAILGGVYKNTKQDDIIF 509
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+PLL +IP+LG F+ + ++++ I T +V
Sbjct: 510 VPLLHRIPVLGEFFKKKTKSDTKSQLLIFVTANIV 544
>gi|149925789|ref|ZP_01914053.1| putative Type II secretory pathway component PulD [Limnobacter sp.
MED105]
gi|149825906|gb|EDM85114.1| putative Type II secretory pathway component PulD [Limnobacter sp.
MED105]
Length = 646
Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats.
Identities = 48/305 (15%), Positives = 100/305 (32%), Gaps = 36/305 (11%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V T +S +++ + + + + + Q+ ++ I E+
Sbjct: 263 SGRVITNPESGTVSVIAKPSQHRRVA---------QWLTQIQRRVDRQIVIEAVITEISL 313
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ + G ++ + A G + F+ L LE
Sbjct: 314 NDRYERGIDWNVL--RQNGITAGLAVQGLNLGNPALTFNALRNTGNTDTSVALRLLEEFG 371
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------------SSTGATSVTTHDYGVV 315
L+ P + ++ Q+A +Y T ST T V T G +
Sbjct: 372 KTEVLSSPRVVTMNQQAAVLKVIDNRVYFTTDVQTSAPTQNSPAFSTFTTQVQTVPVGFL 431
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPS 364
+ TP + I LR++ +S V V + +P + R+ ++ + L S
Sbjct: 432 MTVTPQIADNNAIQLRVRPTLSRIVGFVQDPNPALQQLNIISRVPEVQTRELESILRLKS 491
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G +L GL + + L GIP + + + ++ E+ + +++
Sbjct: 492 GEMALLGGLRQKENSSLSRGIPGAPE--SVDLITQSKNRGESHIELVVLLKATVLESATA 549
Query: 425 RDLSR 429
L
Sbjct: 550 NQLQT 554
>gi|16330870|ref|NP_441598.1| general secretion pathway protein D [Synechocystis sp. PCC 6803]
gi|1653364|dbj|BAA18278.1| general secretion pathway protein D [Synechocystis sp. PCC 6803]
Length = 785
Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 19/208 (9%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-------SGGQHLYKTVSSSTGATSVT 308
F+ + A R+ + L +PTL G++A S + ++ +
Sbjct: 573 FQAQIDAQIRSGNAKILTDPTLIVQEGEAAQVKLTESVIASVDTQVDTQGDTAVRTITPV 632
Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMPSYRVRKADT-T 359
D G+ L+ + G I LR+ V+ P ++ R+ +
Sbjct: 633 LEDVGLTLNVIVDRIDDNGFITLRVNPIVASPAGTQVFDSGAGAINEITLINKRELTSGV 692
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V L T +L+G++ + + +P+L +P++GALFR S + +E+ I TP ++
Sbjct: 693 VRLRDDQTFILSGIISELQRSTTSKVPILGDLPVIGALFRQSTDTTDRSEVIILMTPKII 752
Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
Y+ + F +
Sbjct: 753 HDSTEAQF---GFRYNPDAATAEFLRQK 777
>gi|330963695|gb|EGH63955.1| type III secretion component [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 195
Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 10/190 (5%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I +
Sbjct: 16 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 75
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
+G++ L + + A + L+ S R+ V+ G V+ + ++ L
Sbjct: 76 EGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 134
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + +N AG QV ++V AEV R L + G + ++
Sbjct: 135 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 185
Query: 225 GPSKSFAADF 234
S
Sbjct: 186 TFSFGLLTGG 195
>gi|320184380|gb|EFW59192.1| General secretion pathway protein D [Shigella flexneri CDC 796-83]
Length = 164
Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
+L TP + + + I+ EVS+ + + + RK TTV G IVL GL+
Sbjct: 1 MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
D + +PLL IP++G LF+++ +E+ + + P ++ D
Sbjct: 59 DDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILHDGMAAD 110
>gi|160875361|ref|YP_001554677.1| YscC/HrcC family type III secretion outer membrane protein
[Shewanella baltica OS195]
gi|160860883|gb|ABX49417.1| type III secretion outer membrane pore, YscC/HrcC family
[Shewanella baltica OS195]
gi|315267560|gb|ADT94413.1| type III secretion outer membrane pore, YscC/HrcC family
[Shewanella baltica OS678]
Length = 491
Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 31/263 (11%)
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192
V + G+V +++ + +++ ++ N + + G
Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259
Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
+ + V+I +V KQ+G S + G S SF + + D
Sbjct: 260 RQLDTKPSMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ + +F L+ALE+ + + L+ P++ ++ A K
Sbjct: 313 STVIGNTGNFMMRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKL--EGDKVAK 370
Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362
+ + G +L TP ++ + L + + + V+ + +P + + T L
Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430
Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385
SG +++L G ++D + + I
Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453
>gi|113475300|ref|YP_721361.1| type II and III secretion system protein [Trichodesmium erythraeum
IMS101]
gi|110166348|gb|ABG50888.1| type II and III secretion system protein [Trichodesmium erythraeum
IMS101]
Length = 801
Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 15/215 (6%)
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ +L F + L A + + L +PTL G+ AS
Sbjct: 564 GVNPTNGLLDVTPGNADFGLFPQILYPKRFLSQLRATIVSGNAKILTDPTLVVQEGEVAS 623
Query: 287 FTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSE 338
+ S+ T +V D G+ L + G + + + EVS
Sbjct: 624 LKLVNNIVRSIDSNFTDDGGTSRETRTVQFEDVGLNLVIQVERIDDNGFVTVTVNPEVSF 683
Query: 339 PVIGVNAGDMPS------YRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
V S RK + + L G T++++G++++ + +PLL +
Sbjct: 684 ISDRVRTDANNSSEFGTEIASRKVQSGRIRLRDGQTLIISGIIQEQERTAVTKVPLLGDL 743
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
PI+GALFR+S+ E E + TP ++
Sbjct: 744 PIIGALFRSSQNQNERAETIVLLTPQILDDGDRSS 778
>gi|167466375|ref|ZP_02331079.1| putative outer membrane secretin family protein [Yersinia pestis
FV-1]
Length = 140
Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 9/141 (6%)
Query: 335 EVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
EVS N PS R+RKA+TTVEL G + +L GL+ ++ + IP + I
Sbjct: 5 EVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDI 64
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
P+LGALFRN++ R ++E+ + AT LVKPV+ R + PD + + FF N
Sbjct: 65 PLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFF----NLT 118
Query: 452 YGPKEASEVEGQNYKGAIGFI 472
+ + + GFI
Sbjct: 119 NIKDAKRRKQAKEFLQKGGFI 139
>gi|304408552|ref|ZP_07390173.1| type III secretion outer membrane pore, YscC/HrcC family
[Shewanella baltica OS183]
gi|307305380|ref|ZP_07585128.1| type III secretion outer membrane pore, YscC/HrcC family
[Shewanella baltica BA175]
gi|304352373|gb|EFM16770.1| type III secretion outer membrane pore, YscC/HrcC family
[Shewanella baltica OS183]
gi|306911683|gb|EFN42108.1| type III secretion outer membrane pore, YscC/HrcC family
[Shewanella baltica BA175]
Length = 491
Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 31/263 (11%)
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192
V + G+V +++ + +++ ++ N + + G
Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259
Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
+ + V+I +V KQ+G S + G S SF + + D
Sbjct: 260 RQLDTKPTMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ + +F L+ALE+ + + L+ P++ ++ A K
Sbjct: 313 STVIGNTGNFMLRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKL--EGDKVAK 370
Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362
+ + G +L TP ++ + L + + + V+ + +P + + T L
Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430
Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385
SG +++L G ++D + + I
Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453
>gi|297567918|ref|YP_003686888.1| type II and III secretion system protein [Meiothermus silvanus DSM
9946]
gi|296852367|gb|ADH65380.1| type II and III secretion system protein [Meiothermus silvanus DSM
9946]
Length = 670
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 66/330 (20%), Positives = 122/330 (36%), Gaps = 24/330 (7%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
G+ + + E + R + + V + L G +
Sbjct: 310 GQLLATRPPEPKPVEKPQEKPVERSLPLGYAKATTV---IDLVGKLLPESKEVALAADER 366
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
T Q A ++ ++++ L+ QV L+V + ++ +IG
Sbjct: 367 TNTVLLRGPQAAVAAIERLVGDLDRPIP-QVDLQVRVEQLSSSNGDEIGAALEA------ 419
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ + + G G L AL+ A R+L + T SG+S
Sbjct: 420 -ALGPLSLKADPGSGQYGLGLEVGKTGLLKLNAALKALQSAGKGRSLIDSRFTVSSGESV 478
Query: 286 SFTSGGQHLYK-------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
+ SGG L S T T + ++G+ L TPTV+ +I L + +
Sbjct: 479 NLLSGGSLLIPLTSTGTGGSSGGTSTTGLQNVEFGLELKLTPTVIPGDKIQLGVNINLGS 538
Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
V + ++ + V L SG + VL G++ + ++ + GIP+L +P++G LF
Sbjct: 539 -APTVGPNNSTLVPKQQLTSNVLLSSGNSAVLGGVISVEEKESRSGIPVLMDLPLIGGLF 597
Query: 399 RNSRFNREETEIFIAAT-----PFLVKPVA 423
+ + +T + I T P VKP +
Sbjct: 598 SQTVKSSSQTHLLIVVTAVSRLPEAVKPAS 627
>gi|78186891|ref|YP_374934.1| Type II secretory pathway component PulD-like [Chlorobium luteolum
DSM 273]
gi|78166793|gb|ABB23891.1| Type II secretory pathway component PulD-like protein [Chlorobium
luteolum DSM 273]
Length = 588
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/273 (17%), Positives = 101/273 (36%), Gaps = 20/273 (7%)
Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA----EVRRDILKQI--GFQHSI 219
++ + + + N+ D V + I E+ + G
Sbjct: 230 EYIRSNPDSMSEGQNPGAASMEENLPMPDMVIIDAVILRNEDEITHSKGVNLLNGLSLQF 289
Query: 220 TGSS---------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER-ATAI 269
SS S + D +++ ++ G++ + ++ ++ I
Sbjct: 290 GNSSNPAISFNRAYSSSWTHNPDGTDDTIAKSITNTITGIISVPALTYSMNIFNMGSSKI 349
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+A PTLT + + F SG Q S+ + + GV +H P ++ ++
Sbjct: 350 DVIARPTLTGMLNIDSEFFSGNQIDAAVAGSADSSPISINKEIGVTMHVRPNEITRNKVK 409
Query: 330 LRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
L ++ S + M + K T V++ G T++L+GL + + ++G+
Sbjct: 410 LHVEVSRSFLDTTDKDKITYQYMVTTSNTKVTTDVDIAFGETMILSGLYEREAVDTRDGV 469
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
P+L IP+L LF + + I TP++
Sbjct: 470 PILQDIPLLQYLFSKKTERLFQRSVIILLTPYI 502
>gi|126174170|ref|YP_001050319.1| YscC/HrcC family type III secretion outer membrane protein
[Shewanella baltica OS155]
gi|125997375|gb|ABN61450.1| type III secretion outer membrane pore, YscC/HrcC family
[Shewanella baltica OS155]
Length = 491
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 31/263 (11%)
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192
V + G+V +++ + +++ ++ N + + G
Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259
Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
+ + V+I +V KQ+G S + G S SF + + D
Sbjct: 260 RQLDTKPTMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ + +F L+ALE+ + + L+ P++ ++ A K
Sbjct: 313 STVIGNTGNFMLRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKL--EGDKVAK 370
Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362
+ + G +L TP ++ + L + + + V+ + +P + + T L
Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430
Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385
SG +++L G ++D + + I
Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453
>gi|327538876|gb|EGF25517.1| general secretion pathway protein D [Rhodopirellula baltica WH47]
Length = 1261
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 62/320 (19%), Positives = 103/320 (32%), Gaps = 61/320 (19%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
AV ++T + +++++ L+ V +K IAEVR D +IG + +
Sbjct: 730 AVAEAQTNSVLLSVSPRIYEEVRQLIDRLD-RRPPMVLIKTLIAEVRLDDGFEIGGEFGL 788
Query: 220 TGS-------------SSGPSKSFAADFGGKFVSEGGDFS-------------------- 246
S + P+ +FGG + F
Sbjct: 789 QDSLLFDRGKATGAIATDNPASDPGFNFGGTNLPNSNSFGQESLASQGLTNFGATATQLT 848
Query: 247 ---------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
S L L A ++ L+ P + G T
Sbjct: 849 RVGGLNSGGFVFSAASESVNLFLRTLRVANRLQILSRPEIMTADNTEGYVQVGQNFPRPT 908
Query: 298 --------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347
+S+ + D G++L TP V + G I + I S V
Sbjct: 909 ELTFTSTGGNSTQPIIGIEDVDIGIILRVTPRVGADGMIFMAIDATRSAINNDVGQTIGS 968
Query: 348 --------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
+P+ A TV G T+V GL++ Q +P L+ IP+LG F+
Sbjct: 969 FDNGDPIFVPAIDTTTAQATVTAFDGQTVVFGGLIQKYRQNRTSRVPYLADIPLLGTFFK 1028
Query: 400 NSRFNREETEIFIAATPFLV 419
+ +E+ + TP LV
Sbjct: 1029 YDSEIEQRSELLVVMTPILV 1048
>gi|257061946|ref|YP_003139834.1| type II and III secretion system protein [Cyanothece sp. PCC 8802]
gi|256592112|gb|ACV02999.1| type II and III secretion system protein [Cyanothece sp. PCC 8802]
Length = 899
Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats.
Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 15/179 (8%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310
F + + A +++ + L +PTL GQ A+ + + + + V T
Sbjct: 690 FLSQIEATIQSSNGKVLTDPTLVVQEGQQATVKLTQKVIENITTQVDPLSGVRTTTPVLS 749
Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVS--------EPVIGVNAGDMPSYRVRKADT-TV 360
D G+ L + G I L + ++ + + R+ + +
Sbjct: 750 DAGLTLTIDIDKIDDNGFISLTVSPTIAAIGDVQPFDSGADGGFNQLFLLARRELTSGLI 809
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G T++L+G++ + Q + +P+L IP+LGALFR+ + +E+ + TP ++
Sbjct: 810 RLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTPQIL 868
>gi|75909894|ref|YP_324190.1| type II and III secretion system protein [Anabaena variabilis ATCC
29413]
gi|75703619|gb|ABA23295.1| type II and III secretion system protein [Anabaena variabilis ATCC
29413]
Length = 811
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 16/210 (7%)
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ G + + L A + + L +PTL GQ A
Sbjct: 572 NADGTTTITQGTLGTATTSLPTIYQFPKRLL-ASLQAQVQNGNAKVLTDPTLIVQEGQQA 630
Query: 286 SFTSGGQHLYKTVSSSTGATSVTT-----------HDYGVVLHF-TPTVLSPGRIGLRIQ 333
+ S +++ + + G+ L+ + G + L +
Sbjct: 631 VVKLTTEVFGGFEESGQSSSTGSNTQSSSTKKPIIKEAGLSLNVKVERIDDNGFVSLSVA 690
Query: 334 TEVSEP--VIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
VS P + G + R + + L G T++L+G++++ + +P+L
Sbjct: 691 PTVSAPGGSTQTSDGQITLLSARSLQSGLIRLRDGQTLILSGIIQESDRSTVSKLPILGD 750
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
+P++G+LFR + E E+ + TP ++
Sbjct: 751 LPLIGSLFRKTNRTNERREVIVLLTPQVMD 780
>gi|17228526|ref|NP_485074.1| general secretion pathway protein D [Nostoc sp. PCC 7120]
gi|17130377|dbj|BAB72988.1| general secretion pathway protein D [Nostoc sp. PCC 7120]
Length = 823
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 15/180 (8%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVT 308
L A + L +PTL GQ+A+ + + S +T +
Sbjct: 613 LLANLQAQVTNGNAKILTDPTLIVQEGQTANVKLTQEVVGNITSETTRGDGASTQTVTAE 672
Query: 309 THDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADT-TV 360
D G+ L + G + L + V P + N+ + R ++ +
Sbjct: 673 KTDVGLTLAVKIDRIDDNGFVSLSVAPVVKAPQSSAVINVSGNSQTIFLVSERSLNSGMI 732
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L G T++L+G+++D + IP+L IP++G+LFR + E E+ + TP ++
Sbjct: 733 RLRDGQTLILSGIIQDQDRTSVSKIPILGDIPLIGSLFRKTNRTNERREVIVLLTPQVMD 792
>gi|218248885|ref|YP_002374256.1| type II and III secretion system protein [Cyanothece sp. PCC 8801]
gi|218169363|gb|ACK68100.1| type II and III secretion system protein [Cyanothece sp. PCC 8801]
Length = 743
Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats.
Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 15/179 (8%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310
F + + A +++ + L +PTL GQ A+ + + + + V T
Sbjct: 534 FLSQIEATIQSSNGKVLTDPTLVVQEGQQATVKLTQKVIENITTQVDPLSGVRTTTPVLS 593
Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVS--------EPVIGVNAGDMPSYRVRKADT-TV 360
D G+ L + G I L + ++ + + R+ + +
Sbjct: 594 DAGLTLTIDIDKIDDNGFISLTVSPTIAAIGDVQPFDSGADGGFNQLFLLARRELTSGLI 653
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G T++L+G++ + Q + +P+L IP+LGALFR+ + +E+ + TP ++
Sbjct: 654 RLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTPQIL 712
>gi|330882763|gb|EGH16912.1| type III secretion component [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 215
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 10/203 (4%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
G + + + + +L V V+V++P AD+ V SP +Y+FG+ GQ ++I +
Sbjct: 23 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGQAAGQTSLIALDS 82
Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
DG++ L + + A + L+ S R+ V+ G V+ + ++ L
Sbjct: 83 DGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141
Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + +N AG QV ++V AEV R L + G + ++
Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192
Query: 225 GPSKSFAADFGGKFVSEGGDFSV 247
S + GG +V
Sbjct: 193 TFSFGLLTGGALAADAAGGASNV 215
>gi|325275757|ref|ZP_08141634.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51]
gi|324099108|gb|EGB97077.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51]
Length = 310
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 64/318 (20%), Positives = 108/318 (33%), Gaps = 79/318 (24%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
I I L++PV ++ V V +P ADV R + + G ++++
Sbjct: 39 IEIDQGLQQELRLPVAIERVAVGEPKVADVQASGERGVVITAVGQGNTSLMMW------- 91
Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
T + V + +
Sbjct: 92 ----------------------------------------TACTPSPHKAMVFVRGRASA 111
Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
++ + S ++ QV + EVRR K+ G + GS++ S
Sbjct: 112 DMAQDSFLPSQDTQL--------PSQVQADIRFVEVRRSKYKEAGARLFFKGSNNSLIGS 163
Query: 230 FAADFGG------------------------KFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ F++ F +++ALE
Sbjct: 164 PGTVPNTVVRPDYVPGAQTGENPIAYADVRPGIPLDNSVFNIVWGGGSSRFLAMINALEN 223
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+ TLA P+LT +SGQ+ASF +GG+ S+ + S+ ++GV L TPTV+S
Sbjct: 224 SGFAYTLARPSLTVLSGQTASFLAGGEIPIPVPSAGSDNVSIEYKEFGVRLALTPTVISQ 283
Query: 326 GRIGLRIQTEVSEPVIGV 343
GRI L++ EVSE
Sbjct: 284 GRITLKVAPEVSELDYSN 301
>gi|254448224|ref|ZP_05061686.1| Bacterial type II and III secretion system protein [gamma
proteobacterium HTCC5015]
gi|198262091|gb|EDY86374.1| Bacterial type II and III secretion system protein [gamma
proteobacterium HTCC5015]
Length = 629
Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 86/235 (36%), Gaps = 12/235 (5%)
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
++ F + SV V + L+A + LA PTL A +G
Sbjct: 351 NTANGDIFDPRLNTNQETITNFISVPAVNYNLNI---LNA--KDGVNEILARPTLVARAG 405
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
Q++ F SG + VS G + + GV L TP G I L+++ E +
Sbjct: 406 QTSEFFSGVEVSAAAVSGGAGDSISVEKEIGVKLAVTPEFGPDGSIILQVEAERTFLTTP 465
Query: 343 VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
++ + V + G T++L GL + + + +G+P+L IP++ F
Sbjct: 466 SSSVLFEFRLDTTKTTVNANVAMNYGQTLILGGLNERETENDSDGVPILRDIPLINLFFS 525
Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
+ + I TP A + P++ + + ++ Y
Sbjct: 526 RKTQRDFKKSVMILLTPR----PASYMYTDPEESRASIEARSEAIRGQLQDRYQT 576
>gi|56751665|ref|YP_172366.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC
6301]
gi|56686624|dbj|BAD79846.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC
6301]
Length = 725
Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats.
Identities = 65/466 (13%), Positives = 146/466 (31%), Gaps = 57/466 (12%)
Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD-----VVVHSP 84
++ + + I + + + V + A +
Sbjct: 263 AQSAFNYVLQIAGLQASRRDNVILVGRNLPPSAGGLVSRTFRLNQAVAQNVAGYLTTLGA 322
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
++ F K V + + + I L T + + ++
Sbjct: 323 NSVVSFTKKVCVST-GVQDTTATGGGAGTGAGQGQIQTLSQTSAQCFDEPEVK------E 375
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS--SKKVMNLLNIAGEDQVTLKVTI 202
+ + G + ++ + + + ++ L++ + Q ++ V +
Sbjct: 376 LKVPGTPAGPLPLKNISITADIRTNSLSIVGDPQAINFATGLIQQLDLR-KRQASVNVKV 434
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKS----------------------FAADFGGKFVS 240
++ + L I S ++ S S F ++
Sbjct: 435 IDLDLNDLNAIATSFSFGIGNTLFSGSGGLRTTVIDNAGSVIQPPNDSVFNPSNLPAGIN 494
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+F L A + L +PTL G+ + Q + K S
Sbjct: 495 PANPLLALPNQLTNNFLGALSASIINNKTKLLTDPTLIIQEGERSEVKLTSQVVQKIESE 554
Query: 301 STGA--------TSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVN 344
+T ++ D G+ L + G I L + +S P N
Sbjct: 555 TTTNGSGPPTVSRTIDLADVGLQLTINIERIDDNGFITLTVLPAISSPQDVVTFGDPNTN 614
Query: 345 AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+ R+ + + L T++L+G+++D+ ++ IPLL +P++G+LFR S
Sbjct: 615 GVLTTLIKKREVSSGKIRLRDSQTLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYT 674
Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
+R+ E+ + TP + +A D + Y A++ N +
Sbjct: 675 DRQRREVVVVITPKI---LADTDATVFGYGYQPSPPAQSVLNNTLQ 717
>gi|85058539|ref|YP_454241.1| type III secretion apparatus InvG [Sodalis glossinidius str.
'morsitans']
gi|84779059|dbj|BAE73836.1| type III secretion apparatus InvG [Sodalis glossinidius str.
'morsitans']
Length = 586
Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 81/235 (34%), Gaps = 23/235 (9%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
+ Q+ L + I ++ ++ + Q+G + + S F + S
Sbjct: 328 AKQQIQLSLWILDIDKEEVNQLGVDWAARANIGSGSIEF-------------NSSSLSAS 374
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ F + AL + +A P + A F + + T +
Sbjct: 375 TSYQFLAKVSALASRKDAQVVAHPEILTQENIPALFDNNSSFYVQVKGERTAT--LEKIT 432
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTVELPS 364
YG ++ P + S + + + ++ + + + +P + T +P
Sbjct: 433 YGTLISVLPRLSSGSK-EIEMILDIQDGGLMTGDDNAVMQVAELPLVNTTQISTEARVPK 491
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G ++++ G +D GIP+L IP LG LF ++ P L+
Sbjct: 492 GSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLFDYRYKQTKQFVRMFLIQPKLL 546
>gi|209528276|ref|ZP_03276739.1| type II and III secretion system protein [Arthrospira maxima
CS-328]
gi|209491296|gb|EDZ91688.1| type II and III secretion system protein [Arthrospira maxima
CS-328]
Length = 737
Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 12/205 (5%)
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
D + F + L A + + L +PTL G+SAS Q
Sbjct: 514 DGSITALGSTTFSVFPFFQYPRRFLSTLQAQIVSGRAKILTDPTLVVKEGESASVQLVQQ 573
Query: 293 HLYKTVS-------SSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVN 344
L + S + G+ L + G + + I EVS P V
Sbjct: 574 VLQSRTTIITDTPSGSRETIQPDPTNVGLTLGVNVERIDDNGFVTMSINPEVSSPGARVA 633
Query: 345 AGDMPSY---RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
G+ + R + + L G T++++G+++D + IPLL +PI+G+LFR
Sbjct: 634 TGNDDFFLQVFRRSLSSGRIRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPIVGSLFRR 693
Query: 401 SRFNREETEIFIAATPFLVKPVAMR 425
S + E E+ + TP ++
Sbjct: 694 STTSSERAEVIVLVTPNILDDSDRS 718
>gi|218660088|ref|ZP_03516018.1| pilus assembly secretion protein [Rhizobium etli IE4771]
Length = 157
Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats.
Identities = 83/160 (51%), Positives = 106/160 (66%), Gaps = 4/160 (2%)
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
S G K + ++ T L+ALE+A +RTLAEPTLTAISGQ+A+F SGGQ LY T
Sbjct: 2 SGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATFNSGGQQLYSTT- 60
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ G +V +YG+ L F P VLS GRI L I+T VSEPV G Y+ R A+T+
Sbjct: 61 DNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNAT---YQRRSAETS 117
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR
Sbjct: 118 VELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFR 157
>gi|81301259|ref|YP_401467.1| general secretion pathway protein D [Synechococcus elongatus PCC
7942]
gi|81170140|gb|ABB58480.1| general secretion pathway protein D [Synechococcus elongatus PCC
7942]
Length = 771
Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats.
Identities = 65/466 (13%), Positives = 146/466 (31%), Gaps = 57/466 (12%)
Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD-----VVVHSP 84
++ + + I + + + V + A +
Sbjct: 309 AQSAFNYVLQIAGLQASRRDNVILVGRNLPPSAGGLVSRTFRLNQAVAQNVAGYLTTLGA 368
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
++ F K V + + + I L T + + ++
Sbjct: 369 NSVVSFTKKVCVST-GVQDTTATGGGAGTGAGQGQIQTLSQTSAQCFDEPEVK------E 421
Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS--SKKVMNLLNIAGEDQVTLKVTI 202
+ + G + ++ + + + ++ L++ + Q ++ V +
Sbjct: 422 LKVPGTPAGPLPLKNISITADIRTNSLSIVGDPQAINFATGLIQQLDLR-KRQASVNVKV 480
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKS----------------------FAADFGGKFVS 240
++ + L I S ++ S S F ++
Sbjct: 481 IDLDLNDLNAIATSFSFGIGNTLFSGSGGLRTTVIDNAGSVIQPPNDSVFNPSNLPAGIN 540
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+F L A + L +PTL G+ + Q + K S
Sbjct: 541 PANPLLALPNQLTNNFLGALSASIINNKTKLLTDPTLIIQEGERSEVKLTSQVVQKIESE 600
Query: 301 STGA--------TSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVN 344
+T ++ D G+ L + G I L + +S P N
Sbjct: 601 TTTNGSGPPTVSRTIDLADVGLQLTINIERIDDNGFITLTVLPAISSPQDVVTFGDPNTN 660
Query: 345 AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+ R+ + + L T++L+G+++D+ ++ IPLL +P++G+LFR S
Sbjct: 661 GVLTTLIKKREVSSGKIRLRDSQTLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYT 720
Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
+R+ E+ + TP + +A D + Y A++ N +
Sbjct: 721 DRQRREVVVVITPKI---LADTDATVFGYGYQPSPPAQSVLNNTLQ 763
>gi|318607000|emb|CBY28498.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 531
Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 12/216 (5%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----S 227
+ +V+ L+I QV ++ I E + +G Q + +
Sbjct: 317 TADPKVMKELDQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKT 375
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
S + + + +++ + AL + LA P++ + A F
Sbjct: 376 NSIQTNNNSGNPIPMMMAGLTAGFYKGNWDGLFIALATNSNNNILATPSIVTLDNMEAEF 435
Query: 288 TSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
G + T + +T S++ GV+L P + + L I+ EVS
Sbjct: 436 NVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSS 495
Query: 344 NAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKD 376
+ + R + V + SG T+V+ GLL
Sbjct: 496 DVNANNLGSVFNKRVVNNAVLVKSGETVVVGGLLDK 531
>gi|42527064|ref|NP_972162.1| hypothetical protein TDE1556 [Treponema denticola ATCC 35405]
gi|41817488|gb|AAS12073.1| conserved domain protein [Treponema denticola ATCC 35405]
Length = 400
Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/265 (18%), Positives = 101/265 (38%), Gaps = 7/265 (2%)
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ T + +N +K + + + + + ++ + V+ + + + +
Sbjct: 112 ESIVVTGNPNLIFFRGSNIKREKFLKEMELIDKPKAQIRYQLLVVQYEKSEN--INWAKS 169
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
++F G + + F L+ R LA+ TL I
Sbjct: 170 LEVKKAKGKPMSEFSGIMSNIFNINFDIVSKFGYQFIAKLNFELAENKARVLADTTLNGI 229
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
+G+ F + Y + + + G++L+ V G I + + +V
Sbjct: 230 TGEEVRFQNTNTFRYIDKTLDSNGKPLYGSMREITSGLLLNIKGNVSGDGMITMEVNAQV 289
Query: 337 S-EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
S + GV +G +P + T V PSG I++ GLL+ + ++ IP L IPI G
Sbjct: 290 SKQGSGGVTSGVLPPTSEKIVKTKVRTPSGKPIIIGGLLQVEQNSSEKKIPGLGDIPIAG 349
Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
F++ + TE+ I P++ +
Sbjct: 350 LAFKDINGSETVTEMVIYIVPYIHR 374
>gi|45504747|gb|AAS66838.1| YsaC [Sodalis glossinidius]
Length = 500
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 81/235 (34%), Gaps = 23/235 (9%)
Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
+ Q+ L + I ++ ++ + Q+G + + S F + S
Sbjct: 242 AKQQIQLSLWILDIDKEEVNQLGVDWAARANIGSGSIEF-------------NSSSLSAS 288
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ F + AL + +A P + A F + + T +
Sbjct: 289 TSYQFLAKVSALASRKDAQVVAHPEILTQENIPALFDNNSSFYVQVKGERTAT--LEKIT 346
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTVELPS 364
YG ++ P + S + + + ++ + + + +P + T +P
Sbjct: 347 YGTLISVLPRLSSGSK-EIEMILDIQDGGLMTGDDNAVMQVAELPLVNTTQISTEARVPK 405
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G ++++ G +D GIP+L IP LG LF ++ P L+
Sbjct: 406 GSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLFDYRYKQTKQFVRMFLIQPKLL 460
>gi|289675697|ref|ZP_06496587.1| type II and III secretion system protein [Pseudomonas syringae pv.
syringae FF5]
Length = 137
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
A P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L++
Sbjct: 1 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 60
Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
EVSE I + +P+ +R+ DT++ L G + V++GL+ + P L
Sbjct: 61 APEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGL 120
Query: 389 SKIPILGALFRNSRFNR 405
IPILGA FR+S+ R
Sbjct: 121 GDIPILGAFFRSSQIQR 137
>gi|159903356|ref|YP_001550700.1| Type II secretory pathway, component PulD [Prochlorococcus marinus
str. MIT 9211]
gi|159888532|gb|ABX08746.1| Type II secretory pathway, component PulD [Prochlorococcus marinus
str. MIT 9211]
Length = 575
Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/288 (17%), Positives = 92/288 (31%), Gaps = 41/288 (14%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ Y S ++K + L++ QV L V + +V + + + S +
Sbjct: 270 GDPYLVSIAEKYLKQLDLRQR-QVALSVKVIDVLLNNTTDMKNAFEYGIGDNYIINSESK 328
Query: 233 DF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS--- 284
F + L F + + LA PTL Q
Sbjct: 329 GLMYMFGNKSFSPTDFSVTDSFSLASRKFMGWFRSKVLTNNAKILANPTLILGESQEEIL 388
Query: 285 ---------------------------ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
+ + + + T G+
Sbjct: 389 GGSEVSGSLGLGDSTIGRPWANEGFVKVGTSVVTNYTISSAEDGSTLCEPQTDIAGITFG 448
Query: 318 FTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADT-TVELPSGGTIVLAG 372
+ G + + +S + GD + R+ DT + + G T+VL G
Sbjct: 449 AKVHKIDDNGYVTFSLSPNISAVSETQSIGDCGNISTLSIRRLDTGNIRVRDGDTLVLTG 508
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
++K+D + P+L IP+ G LFR + R+++E+ I TP ++K
Sbjct: 509 VIKEDDTKAITKTPVLGDIPLFGRLFRTNSTVRKKSELIIMVTPKVIK 556
>gi|153848715|ref|ZP_01993991.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
gi|149744675|gb|EDM56143.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
Length = 132
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 66/131 (50%)
Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
++ G+ +S+ ++ L + + V + DP D+VV ++L GK +G
Sbjct: 2 SVHAATAQSGRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGTT 61
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
NV + G+ + ++ + D+ L+ L +F+ D +I V + VVL G+V + Q+
Sbjct: 62 NVSVWDSRGRLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQNM 121
Query: 158 QRAVELSETFL 168
AV+++ETF
Sbjct: 122 DIAVKIAETFA 132
>gi|197106378|ref|YP_002131755.1| hypothetical protein PHZ_c2917 [Phenylobacterium zucineum HLK1]
gi|196479798|gb|ACG79326.1| hypothetical protein PHZ_c2917 [Phenylobacterium zucineum HLK1]
Length = 612
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/238 (19%), Positives = 70/238 (29%), Gaps = 9/238 (3%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGGKFVSEGGDF 245
+ I G + G+ ++S++ S
Sbjct: 291 PLPRMAMVDAVILRTDDTRSATNGVNLLKNLSAYVGNGITVTRSWSTGQPATKTSVVTQN 350
Query: 246 SVKGVLDRFSFETVLH-ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
G L+ A LA+PTL A+ Q A F SG
Sbjct: 351 LGLGSSVGGVLSYSLNIANATEQRAEILAQPTLLALDRQPAQFFSGSNVTIALNGGPGSY 410
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVE 361
SV GV L TPT + + + ++ S E V
Sbjct: 411 GSVQNQPVGVSLSVTPTFVDDDSMLVSVKAVRSFFEETADSATFVQSVQTSRNMVTANVL 470
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L T+VL+GL + ++ + PLL IP + LF + I TP V
Sbjct: 471 LRFDQTLVLSGLSEREVTSIDSRTPLLGDIPGVQHLFATKEDRDYTRSVVIMLTPRRV 528
>gi|222100907|ref|YP_002535475.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga
neapolitana DSM 4359]
gi|221573297|gb|ACM24109.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga
neapolitana DSM 4359]
Length = 380
Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats.
Identities = 41/206 (19%), Positives = 74/206 (35%), Gaps = 12/206 (5%)
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
L++ G + S G + + + +S + + +
Sbjct: 179 LRKWGISWQYSNQSEGENFTINLLE--------KALDIVFNTLDYSVLSHIELSIGDGSA 230
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
+ LA P L SG S F++ Q Y T V + + G + P +L +
Sbjct: 231 KLLANPRLRLQSGSSGKFSAKTQRNYITT--ENDKKVVKSVELGTEVEIKPFLLRDNTVS 288
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
L ++ S + +P + + TV L G T+ + G+ D + + +PLL
Sbjct: 289 LTVKITSSNALDKNEG--LPDTTSQSIEGTVRLKLGETVAIGGIGFDTYTTVTDKVPLLG 346
Query: 390 KIPILGALFRNSRFNREETEIFIAAT 415
IP+ G LF+ + EI I
Sbjct: 347 DIPVFGYLFKKETERKIHKEILILVK 372
>gi|300867368|ref|ZP_07112024.1| type II and III secretion system protein [Oscillatoria sp. PCC
6506]
gi|300334619|emb|CBN57192.1| type II and III secretion system protein [Oscillatoria sp. PCC
6506]
Length = 810
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 11/184 (5%)
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--- 310
F + L A + + L +PTL G++A Q + + +T T +T
Sbjct: 603 TRFLSQLQAQIQTNNAKILTDPTLIVQEGETAGVNLTEQVITNITTQTTAGTGLTQQTVT 662
Query: 311 ----DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADT-TVEL 362
+ G+ L+ + G I +RI V + + R + + L
Sbjct: 663 AEKGNAGLTLNVEVTRIDDNGFISMRINPTVRAIARTSPLGNNLISLLQERSLSSGLIRL 722
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
G T++++G++ D + IP+L +PI+GALFR++ + + E+ + TP ++
Sbjct: 723 RDGQTLIVSGIINDTERVTASKIPILGDLPIIGALFRSTSKSNQRAEVIVLVTPQILDDS 782
Query: 423 AMRD 426
Sbjct: 783 DRSS 786
>gi|257458871|ref|ZP_05623994.1| bacterial type II and III secretion system protein [Campylobacter
gracilis RM3268]
gi|257443859|gb|EEV18979.1| bacterial type II and III secretion system protein [Campylobacter
gracilis RM3268]
Length = 389
Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats.
Identities = 53/228 (23%), Positives = 83/228 (36%), Gaps = 11/228 (4%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
+QV K+TI E + K IG + G ++S F + +
Sbjct: 163 EQVNFKLTILETNTNDYKDIGSHLNSLGDVV--TRSDLNYFINLITMPYSAETNVVTTKK 220
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSV 307
F VL L++ P L A SG F+S Y T + + S
Sbjct: 221 RGFYGVLSLLQQNGVTTIKQSPFLVAKSGAEVYFSSVENVPYLTNTSTYTQNGTATQNSY 280
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
D G+ + P VL + + V + + N P ++ + L G
Sbjct: 281 EYKDVGLKIKIRPVVLQNSNVDFSLDLVVEDLLDTQNTLT-PRTSKKELKSNYSLKRGEL 339
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+VL+G+ KD + G+PLL IPIL LF + + + I T
Sbjct: 340 LVLSGINKDVAYSKRNGVPLLKDIPILKYLFSIEQNYKSTS--IITLT 385
>gi|270488174|ref|ZP_06205248.1| type IV pilus secretin PilQ [Yersinia pestis KIM D27]
gi|270336678|gb|EFA47455.1| type IV pilus secretin PilQ [Yersinia pestis KIM D27]
Length = 422
Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats.
Identities = 63/364 (17%), Positives = 130/364 (35%), Gaps = 19/364 (5%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
P E A +++ + +++++ + + + + +V P +A ++
Sbjct: 63 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 118
Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
L + G ++ + ++ A +TL A++ + +
Sbjct: 119 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 174
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
L G + + S A + + T L + A + + L + QV L I +
Sbjct: 175 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 230
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
+ L+++G + G G + DF SV + E L A
Sbjct: 231 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 289
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
LE+ + +A P L Q+AS G Y A ++ + + + TP +
Sbjct: 290 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 349
Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
L G+I L ++ + P I + +M ++ T V + G TIVL G+ + +
Sbjct: 350 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKNAR 409
Query: 381 LKEG 384
+
Sbjct: 410 VLIK 413
>gi|304415540|ref|ZP_07396167.1| type III secretion apparatus protein [Candidatus Regiella
insecticola LSR1]
gi|304282604|gb|EFL91140.1| type III secretion apparatus protein [Candidatus Regiella
insecticola LSR1]
Length = 360
Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 72/235 (30%), Gaps = 19/235 (8%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ L V I ++ + + G + + + GKF + LD
Sbjct: 92 IELSVWIIDLEKTA---LXXXXXXXXXXLGVNFNVRININGKFGASFNGGG-ASTLDGSR 147
Query: 256 FETVLHALERATAIRTLAEPT-LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
F + AL + ++ P + A F + ++ + YG
Sbjct: 148 FIASIMALSQQNKANIVSRPDCVLTQENIPAIFDNNRAFYS--EVKGDRVATLESVTYGT 205
Query: 315 VLHF---------TPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVEL 362
+ P +I + + E + + +P K T +
Sbjct: 206 SVSVLXXXXXXXXXPRFAEQSQIEMMLNIEDGNEIAQNDNEIKTSLPKVGRTKISTVARV 265
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
P G ++++ G +D + IP L +P +G LFR + T P
Sbjct: 266 PKGKSLLIGGYTRDSSNNTEAKIPGLGSLPWVGGLFRYRQSASANTVRVFLIQPR 320
>gi|37525675|ref|NP_929019.1| hypothetical protein plu1738 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36785103|emb|CAE14031.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 534
Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 79/241 (32%), Gaps = 19/241 (7%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
QV L V I + D Q G S+ S+ S +
Sbjct: 298 QVVLNVKILNLTFDRADQYGVDWSLAYKSARIGLSNESGNSVIDDGGVSTNIHILKGPFS 357
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------- 307
++ AL + + +P++T ++ Q+ Q Y S+T V
Sbjct: 358 DSTLLIKALSAQGKVSIVTQPSVTTLNLQAVPMQVATQTGYVASISNTSTPQVGTSVGIE 417
Query: 308 -TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADTT 359
T G + P ++ +I L+ +S+ +P+ +R
Sbjct: 418 PATVTTGFNMLMLPYAMADKQILLQYNISLSDLKRLEKFGKEETGQVQLPTIDLRAFSQK 477
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V L SG T+VL+G + + G L P L + + R I + TP +V
Sbjct: 478 VRLHSGETLVLSGFEQQSDTSDRSG---LGS-PDNQLLGGSRQGKRNHNVIVVMITPIVV 533
Query: 420 K 420
Sbjct: 534 D 534
>gi|294507285|ref|YP_003571343.1| general secretion pathway protein D [Precursor] [Salinibacter ruber
M8]
gi|294343613|emb|CBH24391.1| Probable general secretion pathway protein D [Precursor]
[Salinibacter ruber M8]
Length = 473
Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats.
Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 19/206 (9%)
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
F S + F L+ +E+ RT+A P +T SG+ G
Sbjct: 221 NLFESVDNILQAPDQISLSQFRRFLNLVEQDNVGRTVANPQVTVQSGEQGEIQIGQDVPI 280
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-----------GRIGLRIQTEVSEPVIGVN 344
+T + G T G+++ TPT+LS I L + E S +
Sbjct: 281 QTTDFA-GNTVTEFFSTGIIIDVTPTLLSQPVADTSGAPVLDFIHLNVDVEDSNSQPSGS 339
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP----ILGALFRN 400
P +A T + L + GL+ + G+P+L +P L +F +
Sbjct: 340 G---PIINRNQASTQILLLDNEATAIGGLISTQKTTRRSGVPILKDLPGWVFGLRYIFGS 396
Query: 401 SRFNREETEIFIAATPFLVKPVAMRD 426
N + E+ I +V P+ R
Sbjct: 397 ETTNVTKQELLIVLRAEIVDPLRARA 422
>gi|83816469|ref|YP_445404.1| general (Type II) secretion pathway (GSP) D protein, putative
[Salinibacter ruber DSM 13855]
gi|83757863|gb|ABC45976.1| general (Type II) secretion pathway (GSP) D protein, putative
[Salinibacter ruber DSM 13855]
Length = 426
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 19/206 (9%)
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
F S + F L+ +E+ RT+A P +T SG+ G
Sbjct: 174 NLFESVDNILQAPDQISLSQFRRFLNLVEQDNVGRTVANPQVTVQSGEQGEIQIGQDVPI 233
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-----------GRIGLRIQTEVSEPVIGVN 344
+T + G T G+++ TPT+LS I L + E S +
Sbjct: 234 QTTDFA-GNTVTEFFSTGIIIDVTPTLLSQPVADTSGAPVLDFIHLNVDVEDSNSQPSGS 292
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP----ILGALFRN 400
P +A T + L + GL+ + G+P+L +P L +F +
Sbjct: 293 G---PIINRNQASTQILLLDNEATAIGGLISTQKTTRRSGVPILKDLPGWVFGLRYIFGS 349
Query: 401 SRFNREETEIFIAATPFLVKPVAMRD 426
N + E+ I +V P+ R
Sbjct: 350 ETTNVTKQELLIVLRAEIVDPLRARA 375
>gi|301165542|emb|CBW25113.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
Length = 493
Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/428 (13%), Positives = 135/428 (31%), Gaps = 76/428 (17%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVII-----LQVPVDVQDVLV---SDPTKADVV 80
+ V+ +G + + IG+ + + VP D+ V+V P +V
Sbjct: 98 TATDQSKVVQELKEFLGDVEGLEIGIKGNKVYVGGEIVVPSDIGRVIVVLGGYPDVVQLV 157
Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
SP+T + + + + + D + V +
Sbjct: 158 ELSPQTQRVIAR----------------------------NMQKEIQKSNMPD--VTVRV 187
Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK------VMNLLNI---- 190
+ +L G+V + D RA +++ ++ +N + + K + N +++
Sbjct: 188 ANGLFMLEGVVSSDVDKTRAEQIAAVYVPDMIQNLARRTEAVKAAEKDIIQNFISVNAKK 247
Query: 191 ---AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
+ + E+ +D K GF+ G + + G S
Sbjct: 248 KPAPIPKMIKISAQFVELTKDYNKIFGFKWEPVLGGGGGTINIGKGADGGVTSSSSGTLA 307
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
+ + L + + A R + + ++ + + +
Sbjct: 308 GTI---SNLFPKLASAKSAGYARVIQSGVIITKDKIASKIVKRSEKPF--AIGTGEFVRT 362
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
G L TPT+L ++ L + VS N GD P T + + S +
Sbjct: 363 EKATAGFDLSITPTILPQEKVDLSMGLTVS-----ANVGDPPETTSNTIQTALVVKSKES 417
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPI----------LGALFRNSRFNREETEIFIAATPF 417
V+ G++ + + P P L + ++ + +++ + TP
Sbjct: 418 AVVGGVVVNKSSTDFDRNP-----PGGVDEVEDGSKLFSFVKSKAYLTNKSQFVVFVTPE 472
Query: 418 LVKPVAMR 425
+++ +
Sbjct: 473 IIESASTG 480
Score = 44.3 bits (103), Expect = 0.040, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 6/164 (3%)
Query: 46 KGKKISIGLNKVIILQVP-VDVQDVLVSDPTKAD-VVVHSPRTMYLFGKNVGQANVILIG 103
KK+ + L + ++ V V + T + V++ R + G GQ +V++
Sbjct: 25 PEKKVEVVLGIDHVEKLDFAPSTKVQVGNDTILNHVIIPQKREITFKGLKPGQTSVMVRN 84
Query: 104 HDGKQMLNLDI-LIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
G + + D + + L+ F+ D + + + + V + G + D R +
Sbjct: 85 TVGDIKAKFLVNITATDQSKVVQELKEFLGDVEGLEIGIKGNKVYVGGEIVVPSDIGRVI 144
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLN--IAGEDQVTLKVTIA 203
+ + + + + + + + I + + V +A
Sbjct: 145 VVLGGYPDVVQLVELSPQTQRVIARNMQKEIQKSNMPDVTVRVA 188
>gi|157163911|ref|YP_001467431.1| type II and III secretion system protein [Campylobacter concisus
13826]
gi|112801005|gb|EAT98349.1| bacterial type II and III secretion system protein [Campylobacter
concisus 13826]
Length = 380
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 10/227 (4%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
+QVT K+TI E +K +G G + A + S S +
Sbjct: 155 EQVTFKLTITETNLKDIKDLGTNLQ--GLLKPLNHGDLAYYINLITSPYITNSNVIKNND 212
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSV 307
+F +L+ L+ + ++ P LTA + F+S Y + S
Sbjct: 213 SAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTDSY 272
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
D G+ ++ P +LS I + + + + ++ P ++ ++ L G
Sbjct: 273 EYKDIGLKINLKPIILSD-HIDFDLHLILEDILSQSSSFT-PIVSKKELKSSYSLKRGDV 330
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+VL+G+ K + + G+P+L I +L LF + + + + +
Sbjct: 331 LVLSGINKKTNAKQRNGVPVLKDIWLLKYLFSVEQDSEINSVLTLTI 377
>gi|331646883|ref|ZP_08347982.1| outer membrane lipoprotein BfpB (Bundle-forming pilus B)
[Escherichia coli M605]
gi|331044200|gb|EGI16331.1| outer membrane lipoprotein BfpB (Bundle-forming pilus B)
[Escherichia coli M605]
Length = 563
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/256 (18%), Positives = 89/256 (34%), Gaps = 21/256 (8%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + +N E QVT+ V + V + S G +
Sbjct: 304 ENYIKKINNELEQQVTINVAVYSVEVTDTSNLALSLSGVLKQRGHELGALSSSTFAVGGL 363
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ + E +L AL++A + + ++T +SGQ GG Y + +
Sbjct: 364 PTLTAYFNGDGSENNEALLSALDKAGKVSIVTSASVTTMSGQPTPLQVGGNRTYVSQIGT 423
Query: 302 -------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--------- 345
+ S ++ G ++ P VL G++ L+ +S N
Sbjct: 424 IMSSVSTQSSVSTSSISTGFSMNILPRVLDNGQVMLQYGINISSLAGTHNGFDEVTAAGT 483
Query: 346 -GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+P+ + R + L +G T+VLAG + + GI P L +
Sbjct: 484 TIQLPNIQQRSFIQSSLLQNGNTLVLAGYEQQRNETSDSGI---GD-PSFKLLGGARAGS 539
Query: 405 REETEIFIAATPFLVK 420
+T I I TP +++
Sbjct: 540 HAKTLIVICITPRVLQ 555
>gi|270637582|ref|ZP_06222100.1| competence protein E [Haemophilus influenzae HK1212]
gi|270317386|gb|EFA28906.1| competence protein E [Haemophilus influenzae HK1212]
Length = 90
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+ ++ +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+
Sbjct: 3 FLKQEINTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKREL 62
Query: 411 FIAATPFLVKP 421
I TP ++K
Sbjct: 63 VIFVTPHILKA 73
>gi|119510022|ref|ZP_01629163.1| general secretion pathway protein D [Nodularia spumigena CCY9414]
gi|119465346|gb|EAW46242.1| general secretion pathway protein D [Nodularia spumigena CCY9414]
Length = 826
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 67/188 (35%), Gaps = 16/188 (8%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT------ 309
L A + + L +PTL GQ+A + + + T ++
Sbjct: 615 LLASLQAQIQNGNAKILTDPTLIVQEGQTADVRLTQEVVGNIIREITRGDGTSSESVTAD 674
Query: 310 -HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADT-T 359
+ G+ L + + G + + R + T
Sbjct: 675 KVNVGLTLAVKVDRIDDNGFVSLSVSPSVSSPQAPAEINLGGSGSQRIFLVSTRSLTSGT 734
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ L G T++L+G++++ + +P+L +P++G+LFR + + E+ + TP ++
Sbjct: 735 IRLRDGQTLILSGIIQESDRTSVSKLPILGDLPLIGSLFRRTNRQNQRQEVIVLLTPQIM 794
Query: 420 KPVAMRDL 427
Sbjct: 795 DDSENSAY 802
>gi|241765871|ref|ZP_04763805.1| pilus (MSHA type) biogenesis protein MshL [Acidovorax delafieldii
2AN]
gi|241364195|gb|EER59385.1| pilus (MSHA type) biogenesis protein MshL [Acidovorax delafieldii
2AN]
Length = 599
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 43/283 (15%)
Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----ADFG 235
+ +K++ ++ QV ++ + +V+ + G + S +
Sbjct: 317 AVEKMLAQVHKVLGKQVYVEAQLIDVQLSDNFEFGVDWTTLRSRLAAGFGSSPMQLGGST 376
Query: 236 GKFVSEGGDF------------------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
+ GG + ++ ++ V++AL ++ L+ P +
Sbjct: 377 ATLPNAGGGYPGRAISIPAALIGSVAGPALGVSYQGSNYGIVINALRSFGNLKVLSNPNV 436
Query: 278 TAISGQSASFTS------------GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
+G A + S+++ + T GV++ P V
Sbjct: 437 QVRNGTPALLSVGTSSRYVSQSASTQTVPGGGASTTSSSVQTDTVFSGVMVGVLPMVRDD 496
Query: 326 GRIGLRIQTEVSEPVI---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
GRI L + S+ G N +P + TT+ + G +V+ GL+
Sbjct: 497 GRIELLLNPMQSDVDPASLQLVAVGGDNLVSLPKVSYKGLTTTLNVGDGDVVVVGGLIDQ 556
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G P +S +P+LG LF N E+ I ++
Sbjct: 557 RTSNNDRGAPGVSDVPLLGKLFGNENKVHGSRELVIVLRARVL 599
>gi|157163960|ref|YP_001466804.1| type II and III secretion system protein [Campylobacter concisus
13826]
gi|112801256|gb|EAT98600.1| bacterial type II and III secretion system protein [Campylobacter
concisus 13826]
Length = 380
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/227 (19%), Positives = 88/227 (38%), Gaps = 10/227 (4%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
+QVT K+TI E +K +G G + A + S S D
Sbjct: 155 EQVTFKLTITETNLKDIKDLGTNLQ--GLLKPLNHGDLAYYINLITSPYITNSNVIKNDD 212
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSV 307
+F +L+ L+ + ++ P LTA + F+S Y + S
Sbjct: 213 SAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTDSY 272
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
D G+ ++ P +LS I + + + + ++ P ++ ++ L G
Sbjct: 273 EYKDIGLKINLKPIILSD-HIDFDLHLILEDILSQSSSLT-PIVSKKELKSSYSLKRGDV 330
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+VL+G+ K + + G+P+L I +L LF + + + + +
Sbjct: 331 LVLSGINKKTTAKQRNGVPVLKDIWLLKYLFSVEQDSEINSVLTLTI 377
>gi|268316135|ref|YP_003289854.1| type II and III secretion system protein [Rhodothermus marinus DSM
4252]
gi|262333669|gb|ACY47466.1| type II and III secretion system protein [Rhodothermus marinus DSM
4252]
Length = 453
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/328 (14%), Positives = 94/328 (28%), Gaps = 42/328 (12%)
Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
++A E +E + A + + + + + + + V + IG
Sbjct: 119 EKAPEKTEVVIGPRRATGEAGAVQAGAVLPATVDTRE-IQINAILFSVNLTKARDIGINW 177
Query: 218 SITGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVKGVLDRFSFE 257
+ + + G F +
Sbjct: 178 DQFFGLTTGTGTGTGGTTGGGTSGTGGQNNVEFYLKTEDLFDPLAPLIEAPNRISFRQLT 237
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
L LE T+A P +T SG+ G + G T G+++
Sbjct: 238 NFLRFLETEGIGETVASPQITVQSGEQGRIQIGSDVPIQ-TRDFAGNTITQFVSTGIIID 296
Query: 318 FTPTVLSP-----------GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
TPT+L + L + E S ADT V L G
Sbjct: 297 VTPTLLVEPAADTAGAPLIEFVHLDVMVENSSATPSAAGL---IIDRNTADTQVLLLDGE 353
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPI----LGALFRNSRFNREETEIFIAATPFLVKPV 422
++ GL ++GIP L +P L +F ++ ++E+ I ++ P+
Sbjct: 354 QTIIGGLYSTRESISRKGIPFLKDLPWWFFGLRYIFGRTQRTITQSELLIVLQVKVLDPL 413
Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
R + + + R+ +
Sbjct: 414 TARASRPLERNLLERSRRE--LMERLER 439
>gi|170738260|ref|YP_001779520.1| type IVB pilus formation outer membrane protein [Burkholderia
cenocepacia MC0-3]
gi|169820448|gb|ACA95030.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia cenocepacia MC0-3]
Length = 559
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/273 (19%), Positives = 84/273 (30%), Gaps = 23/273 (8%)
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + S +V + QV + VT+ V G
Sbjct: 285 VVSSPATGSITVTDTPDVLDRVGQFMEAQNRSLSKQVLIDVTVLSVDLSDDDSYGINWRA 344
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE--TVLHALERATAIRTLAEPTL 277
+ G S S A F + + + + ++ AL R +R ++
Sbjct: 345 VYQALGTSFSLANTFSTTATNPVSFTAQVITPNSRASGTLAMISALSRQGKVRRKTSASI 404
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIG 329
T ++ Q Q Y S+T +V + G + P VL G +
Sbjct: 405 TTLNDQPVPVQVATQQGYLASVSTTNTANVGSQTALTPGTVTTGFNMTLLPHVLDNGTVL 464
Query: 330 LRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
L+ T +S G P R V + SG T+VL+G + K
Sbjct: 465 LQFYTNISALLELKTIESGGQKIQTPQIDTRNFLQRVSMKSGQTLVLSGYEASNDNLTKS 524
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
GI P A R+ EI I TP
Sbjct: 525 GI----GTPNNYAFGGGYDGARDRQEIVILITP 553
>gi|78045321|ref|YP_361571.1| putative PilN-like type II and III secretion system protein
[Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78033825|emb|CAJ19824.1| putative PilN-like Bacterial type II and III secretion system
protein [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 578
Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats.
Identities = 45/277 (16%), Positives = 92/277 (33%), Gaps = 22/277 (7%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLL---NIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
++ + + + ++ ++L N QVTL + + + ++G
Sbjct: 298 IGRVALSPSTGAVTVTDTPDVLDRIGSMLERENTTLTKQVTLHAKVLSLTLNDANEVGVN 357
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
+ S F F + SV ++ AL + T+ P+
Sbjct: 358 WDVVYRSLSRQFEFTTPFQPASSAGTLGASVINTGKFAGTNVIVSALSTLGTVNTITSPS 417
Query: 277 LTAISGQSASFTSGG--------QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
L ++ + A Q + + G + G + P +L+
Sbjct: 418 LKTLNLRPAPIQIARQIGYIQSAQISQTEGAGTLGGLTPGFVTVGFNMTVVPRLLAQNEE 477
Query: 328 ------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
I + E+ G +MP R ++ V L +G T++L G +++
Sbjct: 478 MILQYSINISALNELRSEEAGGTKIEMPDIDTRNFNSEVRLHAGETLILHGFEQENHSSN 537
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ G+ P L ++R R+ T I I TP +
Sbjct: 538 RRGM---GS-PFAWMLGGSARGQRQRTAIVILITPEV 570
>gi|254468950|ref|ZP_05082356.1| Bacterial type II and III secretion system protein [beta
proteobacterium KB13]
gi|207087760|gb|EDZ65043.1| Bacterial type II and III secretion system protein [beta
proteobacterium KB13]
Length = 719
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/298 (12%), Positives = 99/298 (33%), Gaps = 32/298 (10%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRD 208
+ A+ + G + +++ + + Q ++ I EV D
Sbjct: 410 ANDLQADSALGCVDFVADDFGIVASGSILDIQLVEKFLVDQDQPVKQAMIETFILEVNSD 469
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGG------------KFVSEGGDFSVKGVLDRFSF 256
++ + + S+ S++ G +EGG + + R
Sbjct: 470 WKNELESRFTSNTMSTNSSEAAGDGGSGLYSFTAGLLDFASATAEGGITASTRLGSRNQI 529
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTT 309
+++ +E + + ++ P + G+ + +++T + +
Sbjct: 530 SALVNMIETNSLGKKISNPVILVRDGEEGVVDKTRTFRAQRSTTTTNSATTNTSNNQIDE 589
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+D + L TP + + V E + + T +++ G ++
Sbjct: 590 YDAPLKLTVTPNINKHNDVIDLDFNFVEETYDSASPTA--ASTSNNITTKLKIEPGEVVM 647
Query: 370 LAGLLKDDIQQLKEGIPLLSKI-------PILGALFRNSRFNREE-TEIFIAATPFLV 419
+AGL + +G+P +SK+ P++ L + TE+ + P ++
Sbjct: 648 MAGLFQQTQNNTTQGLPFVSKLGFSKLLSPLVALLGGGEVRRTDTGTELLVFINPTVI 705
>gi|218711163|ref|YP_002418783.1| putative type IV pilus outer membrane secretin lipoprotein
[Escherichia coli ED1a]
gi|218349946|emb|CAQ87357.1| putative type IV pilus outer membrane secretin lipoprotein
[Escherichia coli ED1a]
Length = 539
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 19/242 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV L V I +R+ +Q G + S S + F G
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTGAASDAITGGVSIVDGK 361
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
+ L AL + + + + + Q Y ++ +V
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421
Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
T G + P +L + + L + + G + +P+ ++ +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TV+L SG T++++G + + K+G+ P L ++T + + TP
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537
Query: 418 LV 419
++
Sbjct: 538 II 539
>gi|330951304|gb|EGH51564.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae Cit 7]
Length = 106
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 44/96 (45%)
Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
RI + ++ EP +P + + + V + G TIV+ G+ + ++
Sbjct: 1 TPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVV 60
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ +P L +P LG LFR + ++E+ + TP +
Sbjct: 61 DKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 96
>gi|320106632|ref|YP_004182222.1| type II and III secretion system protein [Terriglobus saanensis
SP1PR4]
gi|319925153|gb|ADV82228.1| type II and III secretion system protein [Terriglobus saanensis
SP1PR4]
Length = 819
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/190 (25%), Positives = 75/190 (39%), Gaps = 16/190 (8%)
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ + + L + R L P L + GQ A G + T S ++
Sbjct: 410 NGTNFAVSIGSAALAATL----SDSDTRVLQNPRLRSTDGQRAQLKIGQRIPVATGSYNS 465
Query: 303 G----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350
G T D GV + TPTV I L+++ EVS ++ P
Sbjct: 466 GVSTGVASVGVQTQFQYIDIGVQIDLTPTVHQNHEISLKMKIEVSTHANDETISGVVEPV 525
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
R ++ ++L G +L+G+L G P LS+IP+LG +F N +R TEI
Sbjct: 526 IGQRISEQVIQLKEGEPSILSGILTKTESDSLGGTPGLSQIPLLGRIFSNKTRDRASTEI 585
Query: 411 FIAATPFLVK 420
P +V+
Sbjct: 586 VFVLVPHIVR 595
>gi|73853185|ref|YP_308681.1| pillus assembly protein [Escherichia coli]
gi|33414103|gb|AAL18829.2| Pillus assembly protein [Escherichia coli]
Length = 539
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 19/242 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV L V I +R+ +Q G + S S + F
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDAITGGVSIVDGK 361
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
+ L AL + + + + + Q Y ++ +V
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421
Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
T G + P +L + + L + + G + +P+ ++ +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TV+L SG T++++G + + K+G+ P L ++T + + TP
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537
Query: 418 LV 419
++
Sbjct: 538 II 539
>gi|331680850|ref|ZP_08381490.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli H299]
gi|331081838|gb|EGI52996.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli H299]
Length = 539
Score = 107 bits (267), Expect = 5e-21, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 19/242 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV L V I +R+ +Q G + S S + F
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDAITGGVSIVDGK 361
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
+ L AL + + + + + Q Y ++ +V
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421
Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
T G + P +L + + L + + G + +P+ ++ +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TV+L SG T++++G + + K+G+ P L ++T + + TP
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537
Query: 418 LV 419
++
Sbjct: 538 II 539
>gi|124024476|ref|YP_001018783.1| general (type II) secretion pathway protein D precursor
[Prochlorococcus marinus str. MIT 9303]
gi|123964762|gb|ABM79518.1| possible general (type II) secretion pathway protein D precursor
[Prochlorococcus marinus str. MIT 9303]
Length = 849
Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 47/268 (17%), Positives = 92/268 (34%), Gaps = 29/268 (10%)
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFET 258
+ Q S G + + + + + G ++ + +F
Sbjct: 578 LDATSSSDSQNQTSTSNNGQNQTSASNNSQNQTSTSTQNRGTYNRRRNPGLGYPNQAFYD 637
Query: 259 VLHALERATAIRTLAEPTLT------AISGQ-------SASFTSGGQHLYKTVSSSTGAT 305
L A +T + LA PTL I+G+ A G + + ++
Sbjct: 638 FLRAQIESTNTKVLASPTLILSESNETIAGEIGRKNANEAYVRLGDKVVTAFEITTDQNG 697
Query: 306 SV----TTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKAD 357
+V T G+ L + G + ++ +S V + G+ R +
Sbjct: 698 NVYCEPTFETAGLSLGAKVSKIDDNGFVTFSLEPNLSAKVGEQDQGECGLISTVNERLLE 757
Query: 358 T-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
T V + G T++L G++ D Q+ P+L IP++G FR++ + ++E+ I TP
Sbjct: 758 TGAVRVRDGQTLILTGVISDRDIQVVTKWPILGDIPVIGQFFRSTNGTKSKSELVIMVTP 817
Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
++ Y A
Sbjct: 818 RIIDDEQGGTYGY---GYRPSTRAARNL 842
>gi|254430712|ref|ZP_05044415.1| general secretion pathway protein D [Cyanobium sp. PCC 7001]
gi|197625165|gb|EDY37724.1| general secretion pathway protein D [Cyanobium sp. PCC 7001]
Length = 849
Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 44/288 (15%), Positives = 82/288 (28%), Gaps = 52/288 (18%)
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
V R + + +G G+ S S F + + +F + A
Sbjct: 566 VERTVQRILGRN----GTVSRTRSSNNGGFSNRLDVASTPGNPGNNYAEDTFYDFVRAQI 621
Query: 265 RATAIRTLAEPTLTAISG--------------------------------------QSAS 286
+ + + LA PTL + +
Sbjct: 622 TSGSTKLLASPTLILQENAAELRGAGITGSTDSPGGLDEYSPDSPIGRRRANEGVVRVGT 681
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN- 344
+ G+VL + G + + VS
Sbjct: 682 NVVTNYQVTTPEGGGNIVCDPEVSTAGLVLGARIEKIDDNGFVTFALSPSVSAITGQEQA 741
Query: 345 ----AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
++ VR+ DT V + G T++L G++ D + + P+L IP++G FR
Sbjct: 742 PEGCGSNLNILSVRRLDTGAVRVRDGQTLILTGVISDFDRSVVSKWPILGDIPLIGQFFR 801
Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
++ +E+ E+ I TP ++ Y F
Sbjct: 802 STSNQKEKRELVIMVTPRIINDEQGGAFGY---GYQPGTRQVRDFLGT 846
>gi|319774909|ref|YP_004134178.1| hypothetical protein Theam_1790 [Thermovibrio ammonificans HB-1]
gi|317115257|gb|ADU97746.1| hypothetical protein Theam_1790 [Thermovibrio ammonificans HB-1]
Length = 570
Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 83/259 (32%), Gaps = 20/259 (7%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
+ +KV+N L A QV +V I EV Q G S S +
Sbjct: 313 TDTPENIAKVEKVINSLIKAVSQQVQFRVAIYEVTYSDEFQSGVDWSAVFGSQNLQITTG 372
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G F G F ++ L R ++T+ + + +SG++ + G
Sbjct: 373 QSTGYVFDLSG----YFKAGKSNPFNYLVKLLSRYGKVKTIYDNYVRTLSGETVAIVPGE 428
Query: 292 QHLYKTVSSSTGATSVTTHD---------YGVVLHFTPTVLSPGR------IGLRIQTEV 336
+ + + G+ L+ TP G + R +
Sbjct: 429 TYRFLESIETQSQADTKLVTQVPVFKELSLGIQLYITPLKRDDGTTQYELDVTNRFIKSL 488
Query: 337 SEPVIGVNAGDMPSYRVRK-ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
N +P R T +P V+ G+ + + + G+P L IP+ G
Sbjct: 489 KTYTFDNNTYTVPELIGRTDISLTTVIPKHHFEVITGIKQYKLDSSQSGVPGLMDIPVAG 548
Query: 396 ALFRNSRFNREETEIFIAA 414
LF+ +E +A
Sbjct: 549 ELFKGRSRKATLSEYIVAI 567
>gi|170077129|ref|YP_001733767.1| general secretion pathway protein D [Synechococcus sp. PCC 7002]
gi|169884798|gb|ACA98511.1| general secretion pathway protein D [Synechococcus sp. PCC 7002]
Length = 788
Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 48/220 (21%), Positives = 79/220 (35%), Gaps = 24/220 (10%)
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA-LERATAIRTLAEPTLTAISGQ 283
G + EG V +F L A L R T + +A+PTL +
Sbjct: 540 GVGPNNTPILDLVPFEEGIGTIVPSTTSGTNFIGSLVAGLLRNTTSKIVADPTLIIQENE 599
Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP----------------TVLSPGR 327
+ Q + S S + + ++ P + G
Sbjct: 600 TGELRVTEQIINSVQIVSGSVNSDSDNGTNNAVNVLPEPVLAEVGLFVPITVENIDDNGF 659
Query: 328 IGLRIQTEVSEPVIGV-----NAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDDIQQ 380
I L I EVS P V + ++ + + + +V L T++LAG + +
Sbjct: 660 ITLNITPEVSAPSEEVVFEAGTSRNVLTLKRQSILNSGSVRLRDDQTLILAGAIDERDIT 719
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+P+L IPILG+LFR+S E E+ TP ++
Sbjct: 720 TTSKVPILGDIPILGSLFRSSSRTNERRELLFIITPQVID 759
>gi|304412101|ref|ZP_07393711.1| type II and III secretion system protein [Shewanella baltica OS183]
gi|307305996|ref|ZP_07585742.1| type II and III secretion system protein [Shewanella baltica BA175]
gi|304349651|gb|EFM14059.1| type II and III secretion system protein [Shewanella baltica OS183]
gi|306911489|gb|EFN41915.1| type II and III secretion system protein [Shewanella baltica BA175]
Length = 487
Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 52/286 (18%), Positives = 101/286 (35%), Gaps = 10/286 (3%)
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---N 186
+ + + + + + +RA +L + + +S +V+ N
Sbjct: 192 IFPGAQSLISSAIEKIGQFENISDGEMVKRAYKLKLNQNDKQQLEEDEFTSKVQVLPGSN 251
Query: 187 LLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-D 244
L + G +++ L IA + +Q+ F + S +++ + S G D
Sbjct: 252 ALLVRGTPEEIQLAKRIATLIDVKRQQLLFFLRVYDVSVERTEALGVNSSWLNGSRGLYD 311
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
V D F AL R + E L + Q F V S
Sbjct: 312 IIVPPFTDTVDFFKNFQALYTNNMARGVYETNLLVLENQQGHFGKKET--ATVVLISDKQ 369
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVE 361
S + L+ T +L G++ + +S+ A P + + V
Sbjct: 370 VSTQKIEAENSLYVTGRLLPSGKVQAKFSYIEESLSDDKAEGGATQAPRVNSQSLTSEVY 429
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ G T++L G ++ G+P+LS IP LG LF++ + + +
Sbjct: 430 IEPGQTVILGGFDNTVTDSVESGVPILSSIPWLGELFKSKKETKRK 475
>gi|330950830|gb|EGH51090.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae Cit 7]
Length = 314
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 6/153 (3%)
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---R 327
+ P++ + Q A S ++ G L TP L +
Sbjct: 1 MIGNPSILTLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQ 58
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
+ L + E + I PS R T + G++V+ G + +PL
Sbjct: 59 VQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPL 118
Query: 388 LSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
L IP +G LF++ + E TP L+
Sbjct: 119 LGDIPYIGKLLFQSRSRELSQRERLFILTPRLI 151
>gi|229515151|ref|ZP_04404611.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21]
gi|71480608|gb|AAZ32230.1| VcsC2 [Vibrio cholerae non-O1/non-O139]
gi|229347856|gb|EEO12815.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21]
Length = 485
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 54/341 (15%), Positives = 112/341 (32%), Gaps = 47/341 (13%)
Query: 69 VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
+ V D A D V+ P L + N+ + + L + +
Sbjct: 177 ISVMDRNIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L + ++ S+ +++ G ++ + A ++
Sbjct: 235 LEEDEKSTKVQALPGSNALLVRGT---QEEVKLAKRIAA--------------------- 270
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
L+++ Q+ + + ++ + + +G S G F
Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDIVVPPFT----------- 318
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ F AL R++ E L A+ Q F + S
Sbjct: 319 -----ETTDFLKNFQALYTNGIARSVYETNLLALENQQGQFGKKQTATLTLI--SDKEVK 371
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
+ L+ T +L G++ RIQ ++ P + ++ V + G
Sbjct: 372 TEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDEEGDSNRPPRVSSQSLNSEVYIQPGQ 431
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
T++L G QQ + G+P+LS IP+LG LF+ + ++ +
Sbjct: 432 TVILGGFDNTVTQQQESGVPVLSSIPLLGELFKYTSESKHK 472
>gi|237750361|ref|ZP_04580841.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
gi|229373891|gb|EEO24282.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
Length = 756
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 40/244 (16%), Positives = 85/244 (34%), Gaps = 20/244 (8%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ + L QV + V I + +G S P++S
Sbjct: 508 SQFLQDLEQKMNMQVAIDVEILSLIHFQTNNVGIDWQQIFSILNPTQSSL-----NIAFG 562
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA----------SFTSGG 291
GG + + +++ + L +R+L+ P + A++ Q A +
Sbjct: 563 GGGAMLTLGNNNADLQSIFNLLRTYGDLRSLSNPKIMALNNQPALISVGSVLRYTQNLVY 622
Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI-GLRIQTEVSEPVIGVNAGDM-- 348
Q + +T + G++L TP++ I + ++ NA +
Sbjct: 623 QSNNTNTTIQNTSTQYPSVFAGILLDITPSISHDSVILRINPSITKTKDPDMENAAEALK 682
Query: 349 --PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
P+ + + V+L G +++ GLL + +Q + IP + + L +F
Sbjct: 683 APPNLSTNQLSSIVKLKDGERVIIGGLLNNVVQNTSQAIPKIGENKWLKNIFGKQSRTNR 742
Query: 407 ETEI 410
E+
Sbjct: 743 SEEL 746
>gi|253990257|ref|YP_003041613.1| piln (lipoprotein) [Photorhabdus asymbiotica subsp. asymbiotica
ATCC 43949]
gi|253781707|emb|CAQ84870.1| piln (lipoprotein) [Photorhabdus asymbiotica]
Length = 533
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 20/241 (8%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
QV L V I + D Q G S+ S+ + +
Sbjct: 298 QVVLNVKILNLMFDRADQYGVDWSLAYKSAHIGVGGEGSSAVDGSGISTNIHIL-KGPFS 356
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------- 307
++ AL + + +P++T ++ Q+ Q Y S+T V
Sbjct: 357 DSTLLIKALSAQGKVSIVTQPSVTTLNLQAVPMQVATQTGYVASISNTSTPQVGTSVGIE 416
Query: 308 -TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGDMPSYRVRKADTT 359
T G + P ++ +I L+ +S+ +P+ +R
Sbjct: 417 PATVTTGFNMLMLPYAMADKQILLQYNISLSDLKRLEKFGKEETGQVQLPTVDLRAFSQK 476
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
V L SG T+VL+G + + G L P L + R I + TP +V
Sbjct: 477 VRLHSGETLVLSGFEQQSDASDRSG---LGS-PDNQFLGGSREGKRNHNVIVVMITPIVV 532
Query: 420 K 420
Sbjct: 533 D 533
>gi|1314252|gb|AAC44041.1| BfpB [Escherichia coli]
Length = 552
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 89/266 (33%), Gaps = 22/266 (8%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + +N LN E QVT+ V I V + + +G +
Sbjct: 285 TSSANMKKINEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEAFVNDNGGVLGSVS 344
Query: 233 DFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
S F S + +L+ L + + ++T +SGQ G
Sbjct: 345 TSNFAATSGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGN 404
Query: 292 QHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
Y + ++ S +T G +++ P V G I L+ +SE V N
Sbjct: 405 DRTYVSEIGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNN 464
Query: 345 A----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
+P+ + L +G T+VLAG K + + +G+ + +L
Sbjct: 465 GFDQATVNGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGV-GTTSFKLL 523
Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
G + T I TP ++
Sbjct: 524 GGAL---NGSASRTVTVICITPRIID 546
>gi|88809802|ref|ZP_01125308.1| possible general (type II) secretion pathway protein D precursor
[Synechococcus sp. WH 7805]
gi|88786186|gb|EAR17347.1| possible general (type II) secretion pathway protein D precursor
[Synechococcus sp. WH 7805]
Length = 765
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/207 (20%), Positives = 73/207 (35%), Gaps = 32/207 (15%)
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
F L A ++++ + LA PTL G S S + + ++
Sbjct: 541 ANQFFDFLRAQIQSSSTKVLASPTLIIQEGDDESLGSDDRSISSDGKVGRSRSNEALVSV 600
Query: 313 GVVLHF----------------------------TPTVLSPGRIGLRIQTEVSEPV---I 341
G L + G + + EVS +
Sbjct: 601 GTRLVTSYRVRQDDNANIFCEPVFKNAGLTFGARVDRIDDNGFVTFSLSPEVSAETGIRV 660
Query: 342 GVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
N G++ R+ DT + + G T+VL G+++D Q P+L IP +G FR+
Sbjct: 661 IENCGNISLINSRELDTGKIRVRDGQTLVLTGVIQDSDVQAVTKWPILGDIPFIGQFFRS 720
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDL 427
S +R + E+ I TP ++ +
Sbjct: 721 SGGSRTKRELVILVTPRIIDDTQGGNY 747
>gi|218509314|ref|ZP_03507192.1| pilus assembly secretion protein [Rhizobium etli Brasil 5]
Length = 177
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/130 (40%), Positives = 82/130 (63%), Gaps = 4/130 (3%)
Query: 12 MSIFLFSSNPS-VAKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
++I + P+ L + EA+A +I I+ +++ +GLNK +++ +P D
Sbjct: 18 LAISVTGMAPASFGPLLAVDEAHADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE L
Sbjct: 78 DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137
Query: 128 RRFIADSNIR 137
RRFI DSN +
Sbjct: 138 RRFIPDSNYQ 147
>gi|253771851|ref|YP_003034682.1| type II and III secretion system protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|242378852|emb|CAQ33644.1| gspD [Escherichia coli BL21(DE3)]
gi|253322895|gb|ACT27497.1| type II and III secretion system protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253979310|gb|ACT44980.1| general secretory pathway component, cryptic [Escherichia coli
BL21(DE3)]
Length = 338
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
P++ R V + +G T+VL GLL D ++ +PLL IP++G LFR + R +
Sbjct: 212 PTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKR 271
Query: 409 EIFIAATPFLVK 420
+ + P +++
Sbjct: 272 NLMVFIRPTIIR 283
>gi|153951393|ref|YP_001397557.1| type II and III secretion system protein [Campylobacter jejuni
subsp. doylei 269.97]
gi|152938839|gb|ABS43580.1| bacterial type II and III secretion system protein [Campylobacter
jejuni subsp. doylei 269.97]
Length = 391
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/223 (21%), Positives = 84/223 (37%), Gaps = 11/223 (4%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q+ K+TI E D LK+ G + S + + V D+
Sbjct: 167 PQLKFKITILETNLDFLKEKGSKLSSLFQGNPIKDFHLFVNLITIPYNSQNNIVSS--DK 224
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----- 308
F + L+ LE R ++ P L A S F+S + S+S T V+
Sbjct: 225 KGFYSTLNFLENQRITRIVSNPFLLARSNTEVFFSSVQNIPFLKNSTSVSDTRVSQNTSY 284
Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
D G+ + P ++ ++ + V + + N+ P ++ ++ L G
Sbjct: 285 DYRDVGLQVTLKPVIIGD-KVDFSLHLIVEDLLS--NSNLTPVTSKKELKSSYTLKKGEL 341
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+VL+G+ K GIP L I LG LF+ R + +
Sbjct: 342 LVLSGINKVTNTNYTSGIPYLKDIWFLGNLFKIQRKETNNSVL 384
>gi|194437943|ref|ZP_03070037.1| outer membrane lipoprotein BfpB [Escherichia coli 101-1]
gi|194423164|gb|EDX39157.1| outer membrane lipoprotein BfpB [Escherichia coli 101-1]
Length = 545
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 21/270 (7%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + + LN E QVT+ V + V + + + +G
Sbjct: 280 TSAQNMKRVSEYIQKLNKQLERQVTIDVAVYSVSTSDVSNLSMSLQALLTRNGGVLGSIT 339
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ + +L+ L + + + +T +SGQ G
Sbjct: 340 SNFPAASGTPTITGFLNGNGNSNNQVLLNLLATSGKVSVVTSAAVTTMSGQPVPLKVGND 399
Query: 293 HLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
Y + + T + S ++ G +++ P+V G I L+ +S V +
Sbjct: 400 RTYVSQIGTVMGQTSTTSSASTSSVTTGFLMNLLPSVGEDGNILLQYGITISSLVGSNDG 459
Query: 346 ----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+P+ + L +G T++LAG + + G L K P
Sbjct: 460 FDQATVNGTIIQLPNVDSTTFVQSSLLKNGNTLILAGYEQKRNEISDSG---LGK-PGFK 515
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425
L + I+ TP ++ A +
Sbjct: 516 LLGGSRNGKDSREIKIISITPRIIDVKAGQ 545
>gi|191166277|ref|ZP_03028110.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli B7A]
gi|317054603|ref|YP_004119670.1| PilN [Escherichia coli]
gi|51038809|gb|AAT94189.1| PilN [Escherichia coli]
gi|190903704|gb|EDV63420.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli B7A]
gi|284433134|gb|ADB84873.1| PilN [Escherichia coli]
gi|323974480|gb|EGB69607.1| R64 PilN family protein type IVB pilus formation outer membrane
protein [Escherichia coli TW10509]
Length = 539
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV L V I +R+ +Q G + S S + F
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 361
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
+ L AL + + + + Q Y ++ +V
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421
Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
T G + P +L + + L + + G + +P+ ++ +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TV+L SG T++++G + + K+G+ P L ++T + + TP
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537
Query: 418 LV 419
++
Sbjct: 538 II 539
>gi|305667882|ref|YP_003864356.1| type IV pilus formation outer membrane protein [Escherichia coli]
gi|304655631|emb|CBM42300.1| type IV pilus formation outer membrane protein [Escherichia coli]
gi|333011616|gb|EGK31029.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Shigella flexneri K-227]
gi|333011730|gb|EGK31139.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Shigella flexneri K-227]
Length = 539
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV L V I +R+ +Q G + S S + F
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 361
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
+ L AL + + + + Q Y ++ +V
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421
Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
T G + P +L + + L + + G + +P+ ++ +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TV+L SG T++++G + + K+G+ P L ++T + + TP
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537
Query: 418 LV 419
++
Sbjct: 538 II 539
>gi|170765827|ref|ZP_02900638.1| outer membrane lipoprotein BfpB [Escherichia albertii TW07627]
gi|170124973|gb|EDS93904.1| outer membrane lipoprotein BfpB [Escherichia albertii TW07627]
Length = 545
Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 21/270 (7%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + + LN E QVT+ V + V + + + +G
Sbjct: 280 TSAQNMKRVSEYIQKLNKQLERQVTIDVAVYSVSTSDVSNLSMSLQALLTRNGGVLGSIT 339
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ + +L+ L + + + +T +SGQ G
Sbjct: 340 SNFPAASGTPTITGFLNGNGNSNNQVLLNLLATSGKVSVVTSAAVTTMSGQPVPLKVGND 399
Query: 293 HLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
Y + + T + S ++ G +++ P+V G I L+ +S V +
Sbjct: 400 RTYVSQIGTVMGQTSTTSSASTSSVTTGFLMNLLPSVGEDGNILLQYGITISSLVGSNDG 459
Query: 346 ----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+P+ + L +G T++LAG + + G L K P
Sbjct: 460 FDQATVNGTIIQLPNVDSTTFVQSSLLKNGNTLILAGYEQKRNEVSDSG---LGK-PGFK 515
Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425
L + I+ TP ++ A +
Sbjct: 516 LLGGSRNGKDSREIKIISITPRIIDVKAGQ 545
>gi|168770541|ref|ZP_02795548.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli O157:H7 str. EC4486]
gi|226201055|ref|YP_002756667.1| type IVB pilus formation outer membrane protein [Escherichia coli]
gi|309783663|ref|ZP_07678313.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Shigella dysenteriae 1617]
gi|189360515|gb|EDU78934.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli O157:H7 str. EC4486]
gi|219881684|gb|ACL52054.1| type IVB pilus formation outer membrane protein [Escherichia coli]
gi|308928559|gb|EFP74016.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Shigella dysenteriae 1617]
gi|324010812|gb|EGB80031.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 60-1]
Length = 539
Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV L V I +R+ +Q G + S S + F
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 361
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
+ L AL + + + + Q Y ++ +V
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421
Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
T G + P +L + + L + + G + +P+ ++ +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TV+L SG T++++G + + K+G+ P L ++T + + TP
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537
Query: 418 LV 419
++
Sbjct: 538 II 539
>gi|300993702|ref|ZP_07180511.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 200-1]
gi|300305068|gb|EFJ59588.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 200-1]
Length = 539
Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV L V I +R+ +Q G + S S + F
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 361
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
+ L AL + + + + Q Y ++ +V
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421
Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
T G + P +L + + L + + G + +P+ ++ +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TV+L SG T++++G + + K+G+ P L ++T + + TP
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537
Query: 418 LV 419
++
Sbjct: 538 II 539
>gi|10955355|ref|NP_053067.1| BfpB [Escherichia coli]
gi|190014869|ref|YP_001965381.1| Lipoprotein [Escherichia coli]
gi|194429634|ref|ZP_03062153.1| outer membrane lipoprotein BfpB [Escherichia coli B171]
gi|215276196|ref|YP_002332159.1| lipoprotein [Escherichia coli O127:H6 str. E2348/69]
gi|22653674|sp|Q9S142|BFPB_ECO11 RecName: Full=Outer membrane lipoprotein BfpB; AltName:
Full=Bundle-forming pilus B; Flags: Precursor
gi|229462858|sp|Q47068|BFPB_ECO27 RecName: Full=Outer membrane lipoprotein BfpB; AltName:
Full=Bundle-forming pilus B; Flags: Precursor
gi|6009381|dbj|BAA84840.1| BfpB [Escherichia coli]
gi|109389590|gb|ABG29509.1| Lipoprotein [Escherichia coli]
gi|194412358|gb|EDX28661.1| outer membrane lipoprotein BfpB [Escherichia coli B171]
gi|215267792|emb|CAS07441.1| lipoprotein [Escherichia coli O127:H6 str. E2348/69]
gi|323159042|gb|EFZ45043.1| outer membrane lipoprotein bfpB [Escherichia coli E128010]
Length = 552
Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 22/266 (8%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + +N LN E QVT+ V I V + +G +
Sbjct: 285 TSSANMKKINEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGVLGSVS 344
Query: 233 DFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
S F S + +L+ L + + ++T +SGQ G
Sbjct: 345 TSNFAATSGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGN 404
Query: 292 QHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
Y + ++ S +T G +++ P V G I L+ +SE V N
Sbjct: 405 DRTYVSEIGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNN 464
Query: 345 A----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
+P+ + L +G T+VLAG K + + +G+ + +L
Sbjct: 465 GFDQATVNGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGV-GTTSFKLL 523
Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
G + T I TP ++
Sbjct: 524 GGAL---NGSASRTVTVICITPRIID 546
>gi|323191604|gb|EFZ76862.1| outer membrane lipoprotein bfpB [Escherichia coli RN587/1]
Length = 552
Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 22/266 (8%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + +N LN E QVT+ V I V + +G +
Sbjct: 285 TSSANMKKINEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGVLGSVS 344
Query: 233 DFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
S F S + +L+ L + + ++T +SGQ G
Sbjct: 345 TSNFAATSGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGN 404
Query: 292 QHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
Y + ++ S +T G +++ P V G I L+ +SE V N
Sbjct: 405 DRTYVSEIGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNN 464
Query: 345 A----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
+P+ + L +G T+VLAG K + + +G+ + +L
Sbjct: 465 GFDQATVNGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGV-GTTSFKLL 523
Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
G + T I TP ++
Sbjct: 524 GGAL---NGSASRTVTVICITPRIID 546
>gi|325282922|ref|YP_004255463.1| type II and III secretion system protein [Deinococcus proteolyticus
MRP]
gi|324314731|gb|ADY25846.1| type II and III secretion system protein [Deinococcus proteolyticus
MRP]
Length = 655
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 64/312 (20%), Positives = 115/312 (36%), Gaps = 39/312 (12%)
Query: 139 EMVSDTVVLHGMVRTIQDSQR-AVELSETFLSQSGRNQYANSSSKKVMNLLNI-----AG 192
+ G + D+ R A + + + + +V + +
Sbjct: 351 SSAGTNSTVSGTNTALGDATRLASQEATIIADPRTNSLIVRGTPTQVAQIAELIPTLDRK 410
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
Q+ L+V I E+ + K +G +T + F+ +
Sbjct: 411 VPQINLQVRIQEINEEATKTLGVNWRVTAGGFNVGILPSG--------LTASFNPLQTVT 462
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQ---------------SASFTSGGQHLYKT 297
F+ L+ALE + + + T++ SGQ +A+ G L
Sbjct: 463 GFNIFPALNALESQRVAKRVYDGTVSMQSGQGSLNAGTGSQDASSTAAASIRSGGRLELN 522
Query: 298 VSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVI---------GVNAGD 347
+ + G+ T YGVVL F P+V G I LR++ +++E A
Sbjct: 523 IIGAEGSNIEKTIPYGVVLDFFEPSVAPDGTITLRVRGQINELRNREALNAALASGGAPS 582
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ + A T + SG T++LAGL+ ++ K G+P LS+IP LGAL
Sbjct: 583 LLDFLNSDAQTKISFKSGETVLLAGLMAENNSTTKSGLPFLSQIPGLGALAGEQSTTNNG 642
Query: 408 TEIFIAATPFLV 419
T++ T ++
Sbjct: 643 TQMLFVITGDII 654
>gi|119489367|ref|ZP_01622147.1| general secretion pathway protein D [Lyngbya sp. PCC 8106]
gi|119454640|gb|EAW35786.1| general secretion pathway protein D [Lyngbya sp. PCC 8106]
Length = 800
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 15/185 (8%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-------T 308
F L + + L +PTL G+ A + + + + V
Sbjct: 596 FLQTLQFEIQNRNAKILTDPTLLVQEGEIARVELVENIVKRFNTDTIDNNGVQRTERQPE 655
Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------YRVRKADT-TV 360
D G+ + V G + + + V+ +N G + R+ + +
Sbjct: 656 FEDVGLEVSINVERVDDNGFVTINVNPVVTAITNRINIGGVTGEDFVTETSRREYQSGRI 715
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L G T++++G++++ + IP L +PILGALFR+S E+ + TP ++
Sbjct: 716 RLRDGQTLIVSGIIQEQDRVTASKIPFLGDLPILGALFRSSTRETGRAEVVVLVTPMIMD 775
Query: 421 PVAMR 425
Sbjct: 776 ESDRA 780
>gi|153212013|ref|ZP_01947830.1| VcsC2 [Vibrio cholerae 1587]
gi|124116809|gb|EAY35629.1| VcsC2 [Vibrio cholerae 1587]
Length = 461
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 57/288 (19%), Positives = 100/288 (34%), Gaps = 10/288 (3%)
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184
+ + + + + + RA ++ + + N +
Sbjct: 163 QATFPGAQSLIASAITNIGQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 222
Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
N L + G D+V L IA + +Q+ F + S+ + F D S G
Sbjct: 223 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGI 282
Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
D V + F AL R + E L + Q F S
Sbjct: 283 YDLVVPPFTETTDFLRNFQALTSNGIARGVYETNLLVLENQQGHFGKKQT--ATIALISN 340
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ L+ T +L G + RI + + + N+ P + ++
Sbjct: 341 RQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSLNSE 400
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
V + G TI+L G QQ+K GIP+LS IP+LG LF+++ + +
Sbjct: 401 VYIKPGQTIILGGFDNTVTQQMKSGIPVLSSIPLLGELFKSTSEVKSK 448
>gi|284009077|emb|CBA76056.1| general secretion pathway protein D [Arsenophonus nasoniae]
Length = 221
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 5/194 (2%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV ++ + E F S+ G S GG F G+
Sbjct: 33 RTQVLIESIMFETTDGSNFNFSFGVGKKSGSTVVGGVNTTTLGDILSSSGGSF---GIFS 89
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
L A++ + L+ P + +SGQ+ G+ + + V ++ D
Sbjct: 90 GNVLGLALTAVQGDKHSKLLSVPRILTLSGQNVPI-VTGKIIGQGVDVKNPFQTIERRDV 148
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
G+ L TP VL+ + L ++++ NA D+ + R DTTV+L +G T+++ G
Sbjct: 149 GISLDVTPVVLNGDSVMLTVKSKADSVSNISNATDI-VFNQRSIDTTVQLKNGDTLLIGG 207
Query: 373 LLKDDIQQLKEGIP 386
L++ + +P
Sbjct: 208 LIQHNAVNSTSSVP 221
>gi|1122402|emb|CAA92328.1| BfpB [Escherichia coli]
Length = 553
Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 22/266 (8%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ + +N LN E QVT+ V I V + +G +
Sbjct: 286 TSSANMKKINEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGVLGSVS 345
Query: 233 DFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
S F S + +L+ L + + ++T +SGQ G
Sbjct: 346 TSNFAATSGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGN 405
Query: 292 QHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
Y + ++ S +T G +++ P V G I L+ +SE V N
Sbjct: 406 DRTYVSEIGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNN 465
Query: 345 A----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
+P+ + L +G T+VLAG K + + +G+ + +L
Sbjct: 466 GFDQATVNGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGV-GTTSFKLL 524
Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
G + T I TP ++
Sbjct: 525 GGAL---NGSASRTVTVICITPRIID 547
>gi|87123518|ref|ZP_01079369.1| possible general (type II) secretion pathway protein D precursor
[Synechococcus sp. RS9917]
gi|86169238|gb|EAQ70494.1| possible general (type II) secretion pathway protein D precursor
[Synechococcus sp. RS9917]
Length = 771
Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/207 (20%), Positives = 71/207 (34%), Gaps = 32/207 (15%)
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISG-----------------------QSASFTS 289
F L A +++ + LA PTL G A
Sbjct: 547 TNQFFDFLRAKIESSSTKVLASPTLVLQEGGEKSMGTDKGKISEDGKIGREYSNEAYVRV 606
Query: 290 GGQHLYKTVSSS--TGATSVTTHDYGVVLHF---TPTVLSPGRIGLRIQTEVSEPVIGVN 344
G Q + G L F + G I + E+S PV
Sbjct: 607 GTQFVTSYEVKQDINGNNFCQPVFANAGLTFGARVDKIDDNGFITFALSPEISAPVGSEQ 666
Query: 345 AGD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
G+ + R DT + + G T++L G++ D +++ P+L +P +G FR+
Sbjct: 667 VGNCGAITIINDRSLDTGKIRVRDGQTLILTGVINDTDREVVSKWPILGDLPFVGQFFRS 726
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDL 427
S R ++E+ I TP ++ +
Sbjct: 727 SGGQRSKSELVILVTPRIIDDRSGGSY 753
>gi|153829308|ref|ZP_01981975.1| msha biogenesis protein mshl [Vibrio cholerae 623-39]
gi|148875208|gb|EDL73343.1| msha biogenesis protein mshl [Vibrio cholerae 623-39]
Length = 137
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMP--SYRVRKADTTVELPSGG 366
+ TP + G + L + V E ++P +R++D+ + G
Sbjct: 1 MDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGD 60
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+V+ GL+K + +P L +P LG LFRN+ ++TE+ I P +V
Sbjct: 61 VVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 113
>gi|254508151|ref|ZP_05120276.1| fimbrial assembly protein [Vibrio parahaemolyticus 16]
gi|219548873|gb|EED25873.1| fimbrial assembly protein [Vibrio parahaemolyticus 16]
Length = 553
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/333 (15%), Positives = 104/333 (31%), Gaps = 76/333 (22%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + T + + +++ L+I + QV
Sbjct: 245 KASEIAEMIGGQGAASMLSERGSLTVDERTNALLIRDLKENIDVIRDIIDTLDIPVK-QV 303
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232
++ I V L ++G + T ++ + +
Sbjct: 304 QIEARIVSVNEGNLDELGVRWGFTSTNGNNTVGGSIESNLFQAGLLEGDNLPVDDFLNVN 363
Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ F V + + L AL+R + ++ P L + + A G +
Sbjct: 364 LGATSATASSIAFQVAKLGSDLLLDLELSALQRESKAEVISSPRLITTNKKPAYIEQGTE 423
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350
Y SS+GAT+VT + L TP + R+ L + P V+ G+ +
Sbjct: 424 IPYLES-SSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLNVTQDRPGDVVKTGTGEAVA 482
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF------------ 398
++ T V + +G T+VL G+ F
Sbjct: 483 INTQRIGTQVLVENGETVVLGGI------------------------FQHSVTDTVDKVP 518
Query: 399 ------------RNSRFNREETEIFIAATPFLV 419
R S ++E+ I TP +V
Sbjct: 519 LLGDLPLLGALFRRSYQQMGKSELLIFVTPKVV 551
>gi|300940175|ref|ZP_07154781.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 21-1]
gi|300455011|gb|EFK18504.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 21-1]
Length = 410
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV L V I +R+ +Q G + S S + F
Sbjct: 173 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 232
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
+ L AL + + + + Q Y ++ +V
Sbjct: 233 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 292
Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
T G + P +L + + L + + G + +P+ ++ +
Sbjct: 293 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 352
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TV+L SG T++++G + + K+G+ P L ++T + + TP
Sbjct: 353 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 408
Query: 418 LV 419
++
Sbjct: 409 II 410
>gi|318040699|ref|ZP_07972655.1| general secretory pathway protein D [Synechococcus sp. CB0101]
Length = 167
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 5/146 (3%)
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNA 345
+ K + + G+ + G + + E+S V
Sbjct: 3 TQYVTAYAVKQDINGNNFCEPKFGNAGLTFGARVDKIDDNGFVTFSLSPEISAAVGTQQI 62
Query: 346 GD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+ R DT V + G T++L G++ D+ + + P+L +P++G FR S
Sbjct: 63 DRCGIIYQINDRLLDTGKVRVRDGQTLILTGVISDEDRSVVTKWPILGDLPLVGQFFRRS 122
Query: 402 RFNREETEIFIAATPFLVKPVAMRDL 427
+R ++E+ I TP +VK D
Sbjct: 123 SGDRRKSELVIMVTPRIVKDDQGGDY 148
>gi|301030047|ref|ZP_07193001.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 196-1]
gi|299877181|gb|EFI85392.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 196-1]
Length = 403
Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV L V I +R+ +Q G + S S + F
Sbjct: 166 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 225
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
+ L AL + + + + Q Y ++ +V
Sbjct: 226 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 285
Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
T G + P +L + + L + + G + +P+ ++ +
Sbjct: 286 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 345
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TV+L SG T++++G + + K+G+ P L ++T + + TP
Sbjct: 346 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 401
Query: 418 LV 419
++
Sbjct: 402 II 403
>gi|149925492|ref|ZP_01913756.1| Type II secretory pathway component PulD-like protein [Limnobacter
sp. MED105]
gi|149825609|gb|EDM84817.1| Type II secretory pathway component PulD-like protein [Limnobacter
sp. MED105]
Length = 633
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 82/242 (33%), Gaps = 15/242 (6%)
Query: 191 AGEDQVTLKVTIAEVRR--------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
G + + V + + ++L + Q +
Sbjct: 310 GGPRMLLIDVILLSTQELISTSKGVNLLNALTLQLGNVAGNVAAYSRVNNSTVTNGGPAD 369
Query: 243 GDFSVKGVLDRFSFETVLH-ALERATAIRTLAEPTLTAISGQSASFTSGGQ---HLYKTV 298
++ + + L+ A ++ LA PTL AI G + F SG T
Sbjct: 370 VSTAITRAVTIPALSYSLNIANANSSLNEVLARPTLAAIEGLPSEFFSGTNLSAGFVSTS 429
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRK 355
G+ L TP L GRI L+++ + + +
Sbjct: 430 VQGGTTVVPLEKRIGIKLAVTPVFLPQGRIQLKVEAQRTNLNATTENPRVAYQIEIGETT 489
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
A+ V + G T+VL+GL + ++G+P L +P L LF N R N + + I T
Sbjct: 490 ANANVVMNLGDTLVLSGLSEKSSASNRDGVPGLQDVPGLQYLFSNKRTNDLQRSVLILVT 549
Query: 416 PF 417
P
Sbjct: 550 PR 551
>gi|153827975|ref|ZP_01980642.1| VcsC2 [Vibrio cholerae 623-39]
gi|148876556|gb|EDL74691.1| VcsC2 [Vibrio cholerae 623-39]
Length = 467
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 58/288 (20%), Positives = 101/288 (35%), Gaps = 10/288 (3%)
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184
+ + + + + + RA ++ + + N +
Sbjct: 169 QATFPGAQSLIASAITNIGQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 228
Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
N L + G D+V L IA + +Q+ F + S+ + F D S G
Sbjct: 229 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGI 288
Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
D V + F HAL R + E L + Q F S
Sbjct: 289 YDLVVPPFTETTDFLRNFHALTSNGIARGVYETNLLVLENQQGHFGKKQT--ATIALISN 346
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTT 359
+ L+ T +L G + RI + + + N+ P + ++
Sbjct: 347 RQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSLNSE 406
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
V + G TI+L G QQ+K GIP+LS IP+LG LF+++ + +
Sbjct: 407 VYIKPGQTIILGGFDNTVTQQMKSGIPVLSSIPLLGELFKSTSEVKSK 454
>gi|325284394|ref|YP_004256934.1| type II and III secretion system protein [Deinococcus proteolyticus
MRP]
gi|324316458|gb|ADY27571.1| type II and III secretion system protein [Deinococcus proteolyticus
MRP]
Length = 784
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 55/257 (21%), Positives = 101/257 (39%), Gaps = 16/257 (6%)
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEVRRDILKQIGFQHSITG 221
L++ + + V + I Q V + + + +V++ K +G +
Sbjct: 442 LADDRTNSLLIVGPRGVVEEMVTAVQTIDVPVQAVRVNLKVLQVKQSDAKALGLDWKLGL 501
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ + G S S E L+A RTL + TA+S
Sbjct: 502 GGVTFGQQNGSLSLGYTPSLTPA----------SIEAKLNATLSNGNGRTLIDSQFTALS 551
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
GQ F +GG+ +++ SS+ G +V T + YG+ + P + G + L + T +
Sbjct: 552 GQETKFQNGGELVFRPQSSTVGDNTVQTPAQTYSYGLDITMRPRIAPDGTVVLVLDTTLG 611
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
P + D + TTV++ G T+VL G++ + GIP L +P++G L
Sbjct: 612 NPPVR-GVLDSIQQTRQALKTTVQIRPGETVVLGGVVTSSVSNSSSGIPGLRDLPVIGPL 670
Query: 398 FRNSRFNREETEIFIAA 414
F +R + +
Sbjct: 671 FGQQSTDRNDDALLFVL 687
>gi|85713096|ref|ZP_01044131.1| type IV pilus protein, PilN [Idiomarina baltica OS145]
gi|85693082|gb|EAQ31045.1| type IV pilus protein, PilN [Idiomarina baltica OS145]
Length = 489
Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats.
Identities = 44/274 (16%), Positives = 86/274 (31%), Gaps = 26/274 (9%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ + +N LN + QV L V + EVR D +Q S +
Sbjct: 219 ANASALLVKDTPSVIKQVDRYINQLNKSLTRQVALDVQVIEVRFDDSEQFTVDWSSVRRT 278
Query: 224 SGPSKSFAADFGGK--FVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAI 280
S + + G G F + + + + ++ AL+ ++ P + +
Sbjct: 279 SQGTPWLTSQSGSDNWLQQAAGRFILSPLSGPRNSIDILVQALQEQGQVKVSHHPRILTL 338
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHD--------YGVVLHFTPTVLSPGRI---- 328
+ Q A + Y S + V G + P +L +
Sbjct: 339 NHQVAQLLVEEEQAYLAESEVSTTPYVGQQQRLKPGKLTTGFRMFVLPNILKRDVLLHLS 398
Query: 329 -GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ--QLKEGI 385
+ ++ G N P + + T++L G +Q + + G+
Sbjct: 399 SQMSALQGMNVVQSGDNMIQTPHTSRKHFFLKALVGHEETLLLTGFRNQTVQAGRTRSGV 458
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L L + +RE +E + TP +V
Sbjct: 459 SWL--------LGGGQQKSRENSETLLLITPRIV 484
>gi|289628765|ref|ZP_06461719.1| type II and III secretion system protein [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
Length = 578
Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
+T +L + ++ +LS S + N N A QV
Sbjct: 280 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 339
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
V + E Q+ + +S + +S G++D +
Sbjct: 340 LFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPGISSSAISGSVGIVDTANS 399
Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
++ A+ I + P++T ++ Q A G Y + SV +
Sbjct: 400 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 459
Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
G + P ++ I + + ++ +P+Y +
Sbjct: 460 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 519
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
V+L SG T++L+G +++ + I P L + ++ + + TP
Sbjct: 520 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSILVVLITPI 575
Query: 418 L 418
+
Sbjct: 576 V 576
>gi|217077653|ref|YP_002335371.1| general secretion pathway protein D, putative [Thermosipho
africanus TCF52B]
gi|217037508|gb|ACJ76030.1| general secretion pathway protein D, putative [Thermosipho
africanus TCF52B]
Length = 368
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/221 (17%), Positives = 72/221 (32%), Gaps = 21/221 (9%)
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
++V I E+ K+ G + G+ + +F
Sbjct: 164 IQVKIIEIDESDFKKFGVSWNNEE-------------NNTTSYNNGNLQLSLNPLNVNFN 210
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
++ L + + LAE TL S ++ T + +T + H
Sbjct: 211 IIMDTLISSGNAKVLAEGTLKLKSNSTSQITGYTTVGFTIGKDNTYVEKKINTQIIISGH 270
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
L +++ V + + +T +++ +AGL D
Sbjct: 271 V-----FTDHANLTLKSIVESFIQNSSTFTPVGAS---VETNLDIKYEQPYYIAGLSFDS 322
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ + GIP L IPI+G LF+NS + + I I L
Sbjct: 323 VTKQDGGIPGLKDIPIIGNLFKNSTYTSRKKNIVIFIKARL 363
>gi|68637854|emb|CAI36059.1| type IV pilus protein [Pseudomonas syringae pv. phaseolicola]
Length = 578
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
+T +L + ++ +LS S + N N A QV
Sbjct: 280 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 339
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
V + E Q+ + +S + +S G++D +
Sbjct: 340 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 399
Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
++ A+ I + P++T ++ Q A G Y + SV +
Sbjct: 400 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 459
Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
G + P ++ I + + ++ +P+Y +
Sbjct: 460 AITPGTITSGFNMTLQPRLIDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 519
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
V+L SG T++L+G +++ + I P L + ++ + + TP
Sbjct: 520 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 575
Query: 418 L 418
+
Sbjct: 576 V 576
>gi|330870423|gb|EGH05132.1| type II and III secretion system protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 578
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
+T +L + ++ +LS S + N N A QV
Sbjct: 280 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 339
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
V + E Q+ + +S + +S G++D +
Sbjct: 340 LFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPGISSSAISGSVGIVDTANS 399
Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
++ A+ I + P++T ++ Q A G Y + SV +
Sbjct: 400 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 459
Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
G + P ++ I + + ++ +P+Y +
Sbjct: 460 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 519
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
V+L SG T++L+G +++ + I P L + ++ + + TP
Sbjct: 520 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSILVVLITPI 575
Query: 418 L 418
+
Sbjct: 576 V 576
>gi|76819723|ref|YP_335816.1| hypothetical protein BURPS1710b_A0657 [Burkholderia pseudomallei
1710b]
gi|76584196|gb|ABA53670.1| unknown [Burkholderia pseudomallei 1710b]
Length = 888
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S ++V + QV L VT+ V G ++
Sbjct: 608 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 667
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
+ F ++ D S + F ++ AL + +R ++
Sbjct: 668 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 727
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
T ++ Q Q Y S+T +V + G + P VL G +
Sbjct: 728 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 787
Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
L+ T +S E + P +R V + SG T+V++G +
Sbjct: 788 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 847
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ G+ P + AL R I I TP
Sbjct: 848 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 881
>gi|213026060|ref|ZP_03340507.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 173
Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 6/168 (3%)
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
F L+ALE+++ L++P++ ++ A K + + G +
Sbjct: 1 FMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSL 58
Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLA 371
L TP +L+ +I L + + + + +P + + + L +G +++L
Sbjct: 59 LRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLG 118
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G + + IPLL IP++G LFRN +V
Sbjct: 119 GFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVV 166
>gi|94969549|ref|YP_591597.1| TPR repeat-containing protein [Candidatus Koribacter versatilis
Ellin345]
gi|94551599|gb|ABF41523.1| TPR repeat protein [Candidatus Koribacter versatilis Ellin345]
Length = 619
Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats.
Identities = 47/292 (16%), Positives = 91/292 (31%), Gaps = 58/292 (19%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
A QV L V++ V + Q+G Q ++ A S G
Sbjct: 319 ASRPQVALDVSVYRVSGTLTHQLGVQPPNQFTTFNLGSVLAGLGATNLQSLINQIISSGA 378
Query: 251 LD---RFSFETVL-HALERATAIRTLAEPTLT---------------------------- 278
++ ++ AL P +T
Sbjct: 379 INQANGTDISALITQALGNTQLATLFQTPFVTYGGGLTLMALTVPGTTLNLNFSKANFQN 438
Query: 279 -------AISGQSASFTSGGQHLY------------------KTVSSSTGATSVTTHDYG 313
A +A+ G ++ +T + S D G
Sbjct: 439 LAHMQLRASQNNAATMRIGERYPILNATFAPIYNTPQISALLRTGTYVAPFPSFNYEDLG 498
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ + TP++ + L ++ ++ G + MP ++ T+ L G V+
Sbjct: 499 LTVKATPSIQGNRDVRLNLEMQMRSLGAGTS-NGMPIINNQEYKGTISLKDGEPGVVVSY 557
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
L + + GIP L +IP LG+ ++ E+E+ + TP ++K + +
Sbjct: 558 LTESESRSISGIPGLGQIPGLGSAVASTDREGVESELLVIITPHVLKVIEPK 609
>gi|221271462|dbj|BAH15014.1| putative type III secretion system apparatus protein VscC2 [Vibrio
parahaemolyticus]
Length = 488
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 55/289 (19%), Positives = 98/289 (33%), Gaps = 11/289 (3%)
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184
+ + + + + + RA ++ + + N +
Sbjct: 189 QATFPGAQSLIAAAITNIGQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 248
Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
N L + G D+V L IA + +Q+ F + S+ ++F D S G
Sbjct: 249 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKENFGVDSSWVNGSRGV 308
Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
D V + F AL R + E L + Q F S
Sbjct: 309 YDLVVPPFTETIDFLRNFQALASNGIARGVYETNLLVLENQQGHFGKKQT--ATIALISN 366
Query: 303 GATSVTTHDYGVVLHFT----PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
+ L+ T P+ RI ++ + N+ P + ++
Sbjct: 367 RQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDEEDSDNSNRPPRVSSQSLNS 426
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
V + G TI+L G QQ + GIP+LS IP+LG LF+++ + +
Sbjct: 427 EVYIKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475
>gi|209922067|ref|YP_002296140.1| lipoprotein PilN [Escherichia coli SE11]
gi|209915245|dbj|BAG80318.1| lipoprotein PilN [Escherichia coli SE11]
Length = 560
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ + + + ++ N QV L V + V +Q G ++ S
Sbjct: 281 ASSSTLTVTDTPAVQEAVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKS 340
Query: 224 SGPSKSFAADFGGKFVSEGGDF------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
+ + + G F + ++ AL + +
Sbjct: 341 LHSAGATLNNASGDFTGATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQES 400
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
T + Q +Y S++T T V G + P + G +
Sbjct: 401 TVTNLTPVPIQMADQTVYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQ 460
Query: 330 LRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
L++ +S+P G + +MP ++R V L G ++V+ G +++
Sbjct: 461 LQMNFNLSDPPTIRSFTSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTS 520
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
K G P+ G + E + + I TP
Sbjct: 521 KAGT-FTPANPLFG---GSQTGKNERSTLVIIITPT 552
>gi|148241667|ref|YP_001226824.1| Type II secretory pathway, component PulD [Synechococcus sp.
RCC307]
gi|147849977|emb|CAK27471.1| Type II secretory pathway, component PulD [Synechococcus sp.
RCC307]
Length = 760
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 38/186 (20%), Positives = 81/186 (43%), Gaps = 13/186 (6%)
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTH 310
F + AL R+++ + +A+PTL +S+S G T ++ T +
Sbjct: 557 QFFDFVKALIRSSSAKVVADPTLLVQESESSSVGVGTTVFVNCSSSTSANGTRNFTPKKE 616
Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPV-----IGVNAGDMPS--YRVRKADT-TVE 361
G+ + + G + L + + P + D+P+ VR+ +
Sbjct: 617 TAGLQVDVSVSRIDDNGFVSLALNPVLKAPSGLPVPVNCGGIDLPTRDLAVRELRSGEFR 676
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
+ G T++L G++++++ + + PLL +P++G FR S R++ E+ I TP ++
Sbjct: 677 VRDGQTLILTGVIQEEVLESVDKWPLLGDVPLIGQFFRKSSNTRQKRELVIVVTPRILDD 736
Query: 422 VAMRDL 427
+
Sbjct: 737 NQGGNY 742
>gi|171911301|ref|ZP_02926771.1| type II and III secretion system protein [Verrucomicrobium spinosum
DSM 4136]
Length = 173
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ + N + P + RK T V + G T+ + GL+++D+Q +++ +P+L +P LG
Sbjct: 50 TTVTLTENKIEQPVFSTRKVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDLPFLGR 109
Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
LF++ + + + I T L+ P + + +P +
Sbjct: 110 LFQSKAEDHFKRNLMILVTAKLIDP-SGEPVRKPAPAPTAP 149
>gi|261226370|ref|ZP_05940651.1| type IV pilus outer membrane secretin lipoprotein PilN [Escherichia
coli O157:H7 str. FRIK2000]
Length = 547
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 21/289 (7%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L V ++ T S ++++N N QV L V I ++
Sbjct: 252 LKSEVSSMLTPGTGRMYLSTGSLTVTDTPDVLDSVQEIVNKRNNEMSRQVVLNVEILSIK 311
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ +Q G + + S FG + + L AL
Sbjct: 312 KSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAENVITSGVSIVDGKLAGSKAFLKALSSQ 371
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318
++ + + + + Q + ++ +V T G +
Sbjct: 372 GSVSVVTQNSAVTKNLTPVPMQIANQQGFIESVTTDSTANVGSSTSLNAATITTGFNMTL 431
Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
P + + + L + G + P+ ++ + T++L SG T++L+
Sbjct: 432 LPYIQPDSQNLQLLFSMSLSDKPTFEVFESGGSKAQTPNVDLKTINQTIDLKSGQTVILS 491
Query: 372 GLLKDDIQQLKEGIPLLSKI-PILGALFRNSRFNREETEIFIAATPFLV 419
G + + + K+G+ I P L +T + + TP ++
Sbjct: 492 GFQQSNRKTSKQGV-----ITPSFFGLGGGINSEDGDTILVVLITPNVL 535
>gi|320198845|gb|EFW73444.1| IncI1 plasmid conjugative transfer lipoprotein PilN [Escherichia
coli EC4100B]
Length = 547
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 21/289 (7%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L V ++ T S ++++N N QV L V I ++
Sbjct: 252 LKSEVSSMLTPGTGRMYLSTGSLTVTDTPDVLDSVQEIVNKRNNEMSRQVVLNVEILSIK 311
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ +Q G + + S FG + + L AL
Sbjct: 312 KSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAENVITSGVSIVDGKLAGSKAFLKALSSQ 371
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318
++ + + + + Q + ++ +V T G +
Sbjct: 372 GSVSVVTQNSAVTKNLTPVPMQIANQQGFIESVTTDSTANVGSSTSLNAATITTGFNMTL 431
Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
P + + + L + G + P+ ++ + T++L SG T++L+
Sbjct: 432 LPYIQPDSQNLQLLFSMSLSDKPTFEVFESGGSKAQTPNVDLKTINQTIDLKSGQTVILS 491
Query: 372 GLLKDDIQQLKEGIPLLSKI-PILGALFRNSRFNREETEIFIAATPFLV 419
G + + + K+G+ I P L +T + + TP ++
Sbjct: 492 GFQQSNRKTSKQGV-----ITPSFFGLGGGINSEDGDTILVVLITPNVL 535
>gi|83404883|ref|YP_424898.1| PilN [Escherichia coli]
gi|299836184|ref|YP_003717753.1| putative lipoprotein [Escherichia coli ETEC 1392/75]
gi|46949078|gb|AAT07432.1| PilN [Escherichia coli]
gi|83308609|emb|CAI79602.1| lipoprotein (PilN protein) [Escherichia coli]
gi|297374533|emb|CBL93616.1| putative lipoprotein [Escherichia coli ETEC 1392/75]
Length = 560
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ + + + ++ N QV L V + V +Q G ++ S
Sbjct: 281 ASSSTLTVTDTPAVQEAVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKS 340
Query: 224 SGPSKSFAADFGGKFVSEGGDF------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
+ + + G F + ++ AL + +
Sbjct: 341 LHSAGATLNNASGDFTGATSAGVSILDSATGNAAKFSGSSLLIKALSEQGDVSVVTSQES 400
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
T + Q +Y S++T T V G + P + G +
Sbjct: 401 TVTNLTPVPIQMADQTVYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQ 460
Query: 330 LRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
L++ +S+P G + +MP ++R V L G ++V+ G +++
Sbjct: 461 LQMNFNLSDPPTIRSFTSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTS 520
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
K G P+ G + E + + I TP
Sbjct: 521 KAGT-FTPANPLFG---GSQTGKNERSTLVIIITPT 552
>gi|289647482|ref|ZP_06478825.1| type II and III secretion system protein [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 542
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
+T +L + ++ +LS S + N N A QV
Sbjct: 244 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 303
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
V + E Q+ + +S + +S G++D +
Sbjct: 304 LFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPGISSSAISGSVGIVDTANS 363
Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
++ A+ I + P++T ++ Q A G Y + SV +
Sbjct: 364 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 423
Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
G + P ++ I + + ++ +P+Y +
Sbjct: 424 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 483
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
V+L SG T++L+G +++ + I P L + ++ + + TP
Sbjct: 484 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSILVVLITPI 539
Query: 418 L 418
+
Sbjct: 540 V 540
>gi|66044764|ref|YP_234605.1| type II and III secretion system protein [Pseudomonas syringae pv.
syringae B728a]
gi|63255471|gb|AAY36567.1| type II and III secretion system protein [Pseudomonas syringae pv.
syringae B728a]
Length = 578
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
+T +L + ++ +LS S + N N A QV
Sbjct: 280 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 339
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
V + E Q+ + +S + +S G++D +
Sbjct: 340 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 399
Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
++ A+ I + P++T ++ Q A G Y + SV +
Sbjct: 400 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 459
Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
G + P ++ I + + ++ +P+Y +
Sbjct: 460 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 519
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
V+L SG T++L+G +++ + I P L + ++ + + TP
Sbjct: 520 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 575
Query: 418 L 418
+
Sbjct: 576 V 576
>gi|301646351|ref|ZP_07246238.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 146-1]
gi|301075418|gb|EFK90224.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 146-1]
Length = 547
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 21/289 (7%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L V ++ T S ++++N N QV L V I ++
Sbjct: 252 LKSEVSSMLTPGTGRMYLSTGSLTVTDTPDVLDSVQEIVNKRNNEMSRQVVLNVEILSIK 311
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ +Q G + + S FG + + L AL
Sbjct: 312 KSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAENVITSGVSIVDGKLAGSKAFLKALSSQ 371
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318
++ + + + + Q + ++ +V T G +
Sbjct: 372 GSVSVVTQNSAVTKNLTPVPMQIANQQGFIESVTTDSTANVGSSTSLNAATITTGFNMTL 431
Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
P + + + L + G + P+ ++ + T++L SG T++L+
Sbjct: 432 LPYIQPDSQNLQLLFSMSLSDKPTFEVFESGGSKAQTPNVDLKTINQTIDLKSGQTVILS 491
Query: 372 GLLKDDIQQLKEGIPLLSKI-PILGALFRNSRFNREETEIFIAATPFLV 419
G + + + K+G+ I P L +T + + TP ++
Sbjct: 492 GFQQSNRKTSKQGV-----ITPSFFGLGGGINSEDGDTILVVLITPNVL 535
>gi|9507539|ref|NP_052546.1| lipoprotein [Plasmid ColIb-P9]
gi|32470260|ref|NP_863484.1| lipoprotein [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|168758374|ref|ZP_02783381.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli O157:H7 str. EC4401]
gi|168770673|ref|ZP_02795680.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli O157:H7 str. EC4486]
gi|194447046|ref|YP_002039161.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194447207|ref|YP_002043952.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|195940171|ref|ZP_03085553.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli O157:H7 str. EC4024]
gi|256367618|ref|YP_003108177.1| lipoprotein [Escherichia coli]
gi|307313385|ref|ZP_07593008.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli W]
gi|4512536|dbj|BAA75185.1| lipoprotein [Plasmid ColIb-P9]
gi|4903089|dbj|BAA77974.1| lipoprotein [Plasmid R64]
gi|20521628|dbj|BAB91692.1| PilN type IV pilus secretin [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|70610254|gb|AAZ05401.1| lipoprotein [Salmonella enterica]
gi|85813727|emb|CAJ65888.1| lipoprotein [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|189354781|gb|EDU73200.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli O157:H7 str. EC4401]
gi|189360460|gb|EDU78879.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli O157:H7 str. EC4486]
gi|194358490|gb|ACF56934.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194405511|gb|ACF65732.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|228480873|gb|ACQ42199.1| lipoprotein [Escherichia coli]
gi|306906807|gb|EFN37317.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli W]
gi|315063763|gb|ADT78089.1| Type IVB thin prepilin secretin [Escherichia coli W]
gi|321271467|gb|ADW79557.1| IncI1 conjugal transfer protein PilN [Escherichia coli]
gi|321271565|gb|ADW79654.1| IncI1 conjugal transfer protein PilN [Escherichia coli]
gi|321271661|gb|ADW79749.1| IncI1 conjugal transfer secretin protein PilN [Salmonella enterica
subsp. enterica serovar Kentucky]
gi|323133139|gb|ADX20567.1| lipoprotein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|323381016|gb|ADX53283.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli KO11]
gi|323959238|gb|EGB54902.1| R64 PilN family protein type IVB pilus formation outer membrane
protein [Escherichia coli H489]
gi|330907922|gb|EGH36445.1| incI1 plasmid conjugative transfer lipoprotein PilN [Escherichia
coli AA86]
gi|332346621|gb|AEE59953.1| IncI1 conjugal transfer secretin protein PilN [Escherichia coli
UMNK88]
Length = 560
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ + + + ++ N QV L V + V +Q G ++ S
Sbjct: 281 ASSSTLTVTDTPAVQEAVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKS 340
Query: 224 SGPSKSFAADFGGKFVSEGGDF------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
+ + + G F + ++ AL + +
Sbjct: 341 LHSAGATLNNASGDFTGATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQES 400
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
T + Q +Y S++T T V G + P + G +
Sbjct: 401 TVTNLTPVPIQMADQTVYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQ 460
Query: 330 LRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
L++ +S+P G + +MP ++R V L G ++V+ G +++
Sbjct: 461 LQMNFNLSDPPTIRSFTSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTS 520
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
K G P+ G + E + + I TP
Sbjct: 521 KAGT-FTPANPLFG---GSQTGKNERSTLVIIITPT 552
>gi|330900252|gb|EGH31671.1| type II and III secretion system protein [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 552
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
+T +L + ++ +LS S + N N A QV
Sbjct: 254 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 313
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
V + E Q+ + +S + +S G++D +
Sbjct: 314 LFNVKVFEATLTDTDQLALNWAAVYNSLSTRWGLSLSNTVPGISSSAISGSVGIVDTANS 373
Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
++ A+ I + P++T ++ Q A G Y + SV +
Sbjct: 374 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 433
Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
G + P ++ I + + ++ +P+Y +
Sbjct: 434 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 493
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
V+L SG T++L+G +++ + I P L + ++ + + TP
Sbjct: 494 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 549
Query: 418 L 418
+
Sbjct: 550 V 550
>gi|229529211|ref|ZP_04418601.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)]
gi|229332985|gb|EEN98471.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)]
Length = 489
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 53/345 (15%), Positives = 114/345 (33%), Gaps = 51/345 (14%)
Query: 69 VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
+ V D + A D V+ P L + N+ + + L + +
Sbjct: 177 ISVMDRSIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L + ++ S+ +++ G ++ + A ++
Sbjct: 235 LEEDEKSTKVQALPGSNALLVRGT---QEEVKLAKRIAA--------------------- 270
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
L+++ Q+ + + ++ + + +G S G F
Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDIVVPPFT----------- 318
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ F AL R++ E L A+ Q F + S
Sbjct: 319 -----ETTDFLKNFQALYTNGIARSVYETNLLALENQQGQFGKKQTATLTLI--SNREVK 371
Query: 307 VTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVEL 362
+ L+ T +L G++ ++ E + + G P + ++ V +
Sbjct: 372 TEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDDEGENSDGSQRPPRVSSQSLNSEVYI 431
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
G T++L G QQ + G+P+LS IP+LG LF+ + ++ +
Sbjct: 432 QPGQTVILGGFDNTVTQQQESGVPVLSSIPLLGELFKYTSESKHK 476
>gi|255595192|ref|XP_002536247.1| conserved hypothetical protein [Ricinus communis]
gi|223520311|gb|EEF26137.1| conserved hypothetical protein [Ricinus communis]
Length = 316
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 325 PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
++ +++ EVS V + R A+TT++L + T +LAGL +DD Q+
Sbjct: 2 QDQVSIKVGMEVSNITDQVTTSSGVLAYTIGSRNANTTLQLRNNETQILAGLFRDDEQKT 61
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+ +P L +P++G LF ++ ++ + EI + TP ++ ++
Sbjct: 62 RRKVPGLGNLPLIGKLFSSNNEDKRKNEIVLLITPRIMHNLSPAS 106
>gi|148240700|ref|YP_001226087.1| general secretory pathway protein D [Synechococcus sp. WH 7803]
gi|147849239|emb|CAK24790.1| General secretory pathway protein D [Synechococcus sp. WH 7803]
Length = 773
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/207 (19%), Positives = 70/207 (33%), Gaps = 33/207 (15%)
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
F L A ++++ + LA PTL G ++ S + T+ G
Sbjct: 549 NQFFDFLAAQIQSSSTKILASPTLIIQEGSESTQGSDASKISADGKVGRERTNEALVSVG 608
Query: 314 VVLHF----------------------------TPTVLSPGRIGLRIQTEVSE----PVI 341
L + G + + E+S P
Sbjct: 609 TKLVTSFEVKQDENGNNFCQPVFSNAGLTFGARVEKIDDNGFVTFSLSPEISAAVGVPET 668
Query: 342 GVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
N G++ R DT + + G T++L G++ D Q P+L IP +G FR+
Sbjct: 669 IGNCGNINIINSRTLDTGKIRVRDGQTLILTGVISDTDVQAVTKWPILGDIPFIGQFFRS 728
Query: 401 SRFNREETEIFIAATPFLVKPVAMRDL 427
S +R + E+ I TP ++
Sbjct: 729 SSGDRTKNELVILVTPRIIDDTQGGSY 755
>gi|315186870|gb|EFU20628.1| type II and III secretion system protein [Spirochaeta thermophila
DSM 6578]
Length = 696
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 90/238 (37%), Gaps = 9/238 (3%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+ Q+ + + + ++ ++ + + + + G V
Sbjct: 438 RPQPQIRYDILVVQYQKSEGSDWSRNLDVSLTDTSVEQEPFSLVGSMGNLVSLGIDVVSE 497
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQ------SASFTSGGQHLYKTVSSSTGA 304
++F + L+ + A TLTA+SG+ +++F +
Sbjct: 498 FG-YTFASQLNLKLEESRANIYAHTTLTALSGKDVSFQNTSTFRYRDLEVDPDTGELLST 556
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVEL 362
+ G +L+ V G I + I +SE + +P R T +
Sbjct: 557 GVIRELTSGFILNLGGWVSGDGMITMNISATLSERSSESSDSTSAIPPTTERVVSTFLRT 616
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
SG + ++GL++ ++ +P+L IP+LG LFRNS+ E+ E+ I P ++
Sbjct: 617 DSGKPVSISGLVQKKKTKIVNKVPVLGDIPLLGFLFRNSQEKEEDMEMVIYVVPRVMD 674
>gi|300819642|ref|ZP_07099834.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 107-1]
gi|300907596|ref|ZP_07125231.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 84-1]
gi|301306610|ref|ZP_07212671.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 124-1]
gi|300400664|gb|EFJ84202.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 84-1]
gi|300527809|gb|EFK48871.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 107-1]
gi|300838171|gb|EFK65931.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 124-1]
gi|315252987|gb|EFU32955.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 85-1]
gi|315295843|gb|EFU55160.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 16-3]
gi|324020971|gb|EGB90190.1| type IVB pilus formation outer membrane protein, R64 PilN family
protein [Escherichia coli MS 117-3]
Length = 552
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ + + + ++ N QV L V + V +Q G ++ S
Sbjct: 273 ASSSTLTVTDTPAVQEAVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKS 332
Query: 224 SGPSKSFAADFGGKFVSEGGDF------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
+ + + G F + ++ AL + +
Sbjct: 333 LHSAGATLNNASGDFTGATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQES 392
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
T + Q +Y S++T T V G + P + G +
Sbjct: 393 TVTNLTPVPIQMADQTVYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQ 452
Query: 330 LRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
L++ +S+P G + +MP ++R V L G ++V+ G +++
Sbjct: 453 LQMNFNLSDPPTIRSFTSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTS 512
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
K G P+ G + E + + I TP
Sbjct: 513 KAGT-FTPANPLFG---GSQTGKNERSTLVIIITPT 544
>gi|330952555|gb|EGH52815.1| type II and III secretion system protein [Pseudomonas syringae Cit
7]
Length = 547
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/301 (14%), Positives = 93/301 (30%), Gaps = 29/301 (9%)
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
+T +L + +Q +LS S + N N + QV
Sbjct: 249 NTSILTDIQSNVQAMLSTSPPGRMYLSPSTGTLTVTDRPDVLANVETYLAKTNHSITQQV 308
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
V + E Q+ + +S + +S G++D +
Sbjct: 309 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 368
Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
++ A+ I + P++T ++ Q A G Y + SV +
Sbjct: 369 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 428
Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
G + P ++ I + + ++ +P+Y +
Sbjct: 429 AITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPFTSNGSSVQIPNYDAKSLS 488
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
V+L SG T++L+G D++ + I P L ++ + + TP
Sbjct: 489 PKVKLRSGQTLILSGF--DELNDNTDKI-GTGS-PGFFGLGGGRTRTSSQSFLVVLITPI 544
Query: 418 L 418
+
Sbjct: 545 V 545
>gi|89885888|ref|YP_516086.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
gi|89347886|gb|ABD72088.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
Length = 622
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 81/249 (32%), Gaps = 25/249 (10%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSVKGVL 251
+ I EV Q G + + + GP S A S G FS
Sbjct: 192 IVFDTYIYEVNLTDGAQTGIKWNKLAMAIGPGGSLGALGAVGGSTVADSGGMGFSAIYKG 251
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
RF + L+ ++T+A+P + +SG F +G Y + + +T++
Sbjct: 252 SRFDLDAFFSFLQTQGNVKTIAQPKIAIMSGSKGGFKAGSTTKYVSQVGTNSSTTINQTT 311
Query: 312 Y-------GVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
G+ L T V RI L + + +P R+ T
Sbjct: 312 VSTDTAVSGLDLSLTGDVSDGTVYARIRISLSELIRFNSFEALGTSLQLPQTTSRELTTA 371
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSK---IPILGALFRNSRFNREETEIFIAATP 416
+ G ++L G+ G+P +P +S TE+ + P
Sbjct: 372 IRARPGDVVLLGGVNNSSESSDYSGLPGEKGQMLVP------TSSNKKVARTELVMVMKP 425
Query: 417 FLVKPVAMR 425
+V+ +
Sbjct: 426 KIVRFSNPQ 434
>gi|153930668|ref|YP_001393312.1| PilN family type IV pilus biogenesis protein [Yersinia
pseudotuberculosis IP 31758]
gi|152958209|gb|ABS45671.1| type IV pilus biogenesis protein, PilN family [Yersinia
pseudotuberculosis IP 31758]
Length = 564
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/254 (19%), Positives = 83/254 (32%), Gaps = 23/254 (9%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSEGG 243
+ NI QV L V I V L +G ++ S + +
Sbjct: 315 IASENIKITQQVLLNVKILSVSLKDLDDLGLDWNVIYKSMSGKWGINLKNAFSDLATNAT 374
Query: 244 DFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
S+ + F+ ++ AL + + P++T ++ Q A Q Y S
Sbjct: 375 SGSISILDPNSQFDGTTMLIKALSEQGKVSVVTSPSITTLNLQPAPVQVSRQTSYLASRS 434
Query: 301 STGATS--------VTTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNA 345
+T T+ T G + P ++ R I L ++ + N
Sbjct: 435 TTSTTNAGTETSLTPGTVTTGFNMSLLPAIIPDTRDLLLQYNINLSSLIQIRKIGTENNQ 494
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
+MP R V+L SG T+V++G + K G+ G N
Sbjct: 495 IEMPDTDSRIFSQQVKLRSGETLVISGFEQTADNANKSGV---GDAEFWG-FGGARSRNS 550
Query: 406 EETEIFIAATPFLV 419
I + TP L+
Sbjct: 551 TRDIIVVIITPVLL 564
>gi|83716256|ref|YP_438966.1| type IV pilus biogenesis protein PilN [Burkholderia thailandensis
E264]
gi|83650081|gb|ABC34145.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
thailandensis E264]
Length = 878
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 87/278 (31%), Gaps = 29/278 (10%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S ++V + QV L VT+ V G S+
Sbjct: 598 VSSPATGSISVTDTPDVLERVAAFMTQQNRSLSRQVLLNVTVLSVSLKAGDAYGIDWSLV 657
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
+ + F +++ D S + F ++ AL + +R ++
Sbjct: 658 YKTMSAGFNITNPFNPVSLTKPADLSATVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 717
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
T ++ Q Q Y S+T +V + G + P VL G +
Sbjct: 718 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 777
Query: 330 LRIQTEVSEPVI-----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
L+ T +S + P +R V + SG T+V++G +
Sbjct: 778 LQFSTNISSLLQLKEVSSSTGGRSAARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 837
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ G+ P + AL R I I TP
Sbjct: 838 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 871
>gi|28901194|ref|NP_800849.1| putative type III secretion system EscC protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|260362753|ref|ZP_05775622.1| protein VcsC2 [Vibrio parahaemolyticus K5030]
gi|260880041|ref|ZP_05892396.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034]
gi|260895158|ref|ZP_05903654.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466]
gi|28809707|dbj|BAC62682.1| putative type III secretion system EscC protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|308085690|gb|EFO35385.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466]
gi|308092233|gb|EFO41928.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034]
gi|308112426|gb|EFO49966.1| protein VcsC2 [Vibrio parahaemolyticus K5030]
Length = 487
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/343 (14%), Positives = 113/343 (32%), Gaps = 49/343 (14%)
Query: 69 VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
V V D A D V+ P L + N+ + + L + +
Sbjct: 177 VSVMDRNIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L + ++ ++ +++ G ++ + A ++
Sbjct: 235 LEEDEKSTKVQALPGTNALLIRGT---QEEVKLAKRIAA--------------------- 270
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
L+++ Q+ + + ++ + + +G + G F
Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGNRGIYDIVVPPFT----------- 318
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ F AL R++ E L A+ Q + F + S
Sbjct: 319 -----ETKDFVKNFQALYSNGIARSVYETNLVALENQQSQFGKKQTATLTLI--SDKQVK 371
Query: 307 VTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ L+ T +L G++ ++ E + ++ P + ++ V +
Sbjct: 372 TEKIEADNSLYVTGRLLPSGQVQARIQYVEESLDEDDNEDSNRPPRVSSQSLNSEVYIQP 431
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
T++L G QQ + G+P++S IP+LG LF+ + ++ +
Sbjct: 432 NQTVILGGFDNTVTQQQESGVPIISSIPLLGELFKYTSESKHK 474
>gi|330966660|gb|EGH66920.1| type II and III secretion system protein [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 578
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/245 (15%), Positives = 77/245 (31%), Gaps = 23/245 (9%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV V + E Q+ S S + +S G++D
Sbjct: 336 TQQVLFNVKVFEATLTDTDQLALNWSAVYKSLSTKWGLSLSNSVPGISSSAISGSVGIVD 395
Query: 253 RFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
+ ++ A+ I + P++T ++ Q A G Y + SV
Sbjct: 396 TANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASV 455
Query: 308 TTHDY--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRV 353
+ G + P ++ I + + ++ +P+Y
Sbjct: 456 GSSTAITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPFTSNGSSVQIPNYDA 515
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
+ V+L SG T++L+G D++ + I P L ++ + +
Sbjct: 516 KSLSPKVKLRSGQTLILSGF--DELSDNTDKI-GTGS-PGFFGLGGGRTRTSSQSFLVVL 571
Query: 414 ATPFL 418
TP +
Sbjct: 572 ITPIV 576
>gi|32471490|ref|NP_864483.1| general secretory pathway protein D [Rhodopirellula baltica SH 1]
gi|32443331|emb|CAD72164.1| similar to general secretory pathway protein D [Rhodopirellula
baltica SH 1]
Length = 1161
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 56/326 (17%), Positives = 95/326 (29%), Gaps = 81/326 (24%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQ---VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-- 227
+ ++++LL Q +T++V + +QIG + + P
Sbjct: 818 VVSTTSDVHDQIVDLLESLRRLQNLQITIEVRFITLSDTFFEQIGIDFDLQFDDNAPGLP 877
Query: 228 ----------------------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
S A G + +L
Sbjct: 878 GDDSGPEITIGLDGDGTPTADLDIRLDQNSGATVPFGAPDAGAISTLGFAILSDIEAYFF 937
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDY 312
L A + + + P +T GQ AS + T + + D
Sbjct: 938 LQAAQGDSRTNVMQAPKVTLFDGQIASIQDQTSRPFVTSIVPVVGDFAVAQQPVIVVLDE 997
Query: 313 GVVLHFTPTVLSPGR-IGLRIQTEVSEP-------------------------------- 339
G L+ V R + L + S+
Sbjct: 998 GTRLNVQGVVSEDKRFVRLTLIPTFSQIGEVNEFTFQGNSTTRNTSNRNVDTNGDGVIDE 1057
Query: 340 --------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
V P++ +TTV +P GGTI+L G+ + + + G+P LSKI
Sbjct: 1058 EDEQEEESVTQGTTVQQPTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKI 1117
Query: 392 PILGALFRNSRFNREETEIFIAATPF 417
P + LFRN+ RE + + TP
Sbjct: 1118 PYVSRLFRNTAVGRESRSLMMMVTPR 1143
>gi|330959534|gb|EGH59794.1| putative type II and type III secretion system pilus protein
[Pseudomonas syringae pv. maculicola str. ES4326]
Length = 550
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/294 (14%), Positives = 97/294 (32%), Gaps = 19/294 (6%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
++ G+ + + + + +G + + V ++V +V
Sbjct: 254 MIGGLGNSEEAPAYIEGIRSVGIVTAGGKPSKMKVLDRYLKRAIEESTKVVNVQVEAYDV 313
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF---SVKGVLDRFSFETVLHA 262
KQ G ++ +S+ +F + F + + ++
Sbjct: 314 LLTDGKQKGIDWNLLVNSTVSGNPLGLNFFNTSPTSDDPFWNVKGTYSSSKVTASALVKF 373
Query: 263 LERATAIRTLAEPTLTAISGQSA--------SFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
LE+ + +P +T +G A ++ + + T + GV
Sbjct: 374 LEQYGRVELKDQPNITVRNGVPAQIYAGEELTYIVDVEQSQDESGNVTVTPKLGRLKVGV 433
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVELPSGGTI 368
L T VL ++ + + +S + P +++ T + SG ++
Sbjct: 434 TLSVTVRVLDNDQLLVDVWPVISNLNDPDTINIGDYSFNTPRVNLKEFSTQLITSSGQSV 493
Query: 369 VLAGLLKDDIQQLKEGIPL--LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L GL+ + + +P L IL L + + E E+ + TP LV+
Sbjct: 494 HLGGLITKRMNEAMRQLPWQNLVTKAILNPLTQGINNSLERRELVLVVTPTLVQ 547
>gi|10955502|ref|NP_065354.1| type IV pilus outer membrane secretin lipoprotein PilN [Escherichia
coli]
gi|9971696|dbj|BAB12647.1| pilN [Escherichia coli]
gi|326344460|gb|EGD68213.1| IncI1 plasmid conjugative transfer lipoprotein PilN [Escherichia
coli O157:H7 str. 1125]
Length = 547
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 21/289 (7%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L V ++ T S ++++N N QV L V I ++
Sbjct: 252 LKSEVSSMLTPGTGRMYLSTGSLTVTDTPDVLDSVQEIVNKRNNEMSRQVVLNVEILSIK 311
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ +Q G + + S FG + + L AL
Sbjct: 312 KSSQEQAGIDWNAVFNDGHLGLSLGGSFGDAAENVITSGVSIVDGKLAGSKAFLKALSSQ 371
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318
++ + + + + Q + ++ +V T G +
Sbjct: 372 GSVSVVTQNSAVTKNLTPVPMQIANQQGFIESVTTDSTANVGSSTSLNAATITTGFNMTL 431
Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
P + + + L + G + P+ ++ + T++L SG T++L+
Sbjct: 432 LPYIQPDSQNLQLLFSMSLSDKPTFEVFESGGSKAQTPNVDLKTINQTIDLKSGQTVILS 491
Query: 372 GLLKDDIQQLKEGIPLLSKI-PILGALFRNSRFNREETEIFIAATPFLV 419
G + + + K+G+ I P L +T + + TP ++
Sbjct: 492 GFQQSNRKTSKQGV-----ITPSFFGLGGGVNSEDGDTILVVLITPNVL 535
>gi|167621192|ref|ZP_02389823.1| Type II secretory pathway, component PulD [Burkholderia
thailandensis Bt4]
Length = 400
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 74/231 (32%), Gaps = 18/231 (7%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQ--IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
+V ++ + EV + S+ G G + G
Sbjct: 176 REAGEVVVRGWVYEVSNINSRNSAFSIAASLFGGIPGWGGKLSLSNGATDADPTA----- 230
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-----KTVSSSTG 303
+ + AL+ + R +++P + +SG+ G Q S T
Sbjct: 231 LRFSSSMLDVAISALDADSRFRQISDPHVRVVSGERVRLNVGAQVPTLGSISYQGQSGTP 290
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
SV D G++ P V+ + S + P+ R+ T V +
Sbjct: 291 VQSVEYQDAGLIFDVQPVVMGDVVQVRLAEQLSSFVTTTTGVNNSPTKNTREMSTVVNMK 350
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
G +VL GL++D + I L P + F ++ TE+ +
Sbjct: 351 DGEVVVLGGLVQDQDTSSRNSIGWL---P---SFFDGKSGSKGRTEVLLVL 395
>gi|328469624|gb|EGF40560.1| putative type III secretion system EscC protein [Vibrio
parahaemolyticus 10329]
Length = 488
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 56/289 (19%), Positives = 98/289 (33%), Gaps = 11/289 (3%)
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184
+ + + + + + RA ++ + + N +
Sbjct: 189 QATFPGAQSLIAAAITNIGQFKNISDGELVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 248
Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
N L + G D+V L IA + +Q+ F + S+ + F D S G
Sbjct: 249 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGV 308
Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
D V + F AL R + E L A+ Q F S
Sbjct: 309 YDLVVPPFSETIDFLRNFQALASNGIARGVYETNLLALENQQGHFGKKQT--ATIALISN 366
Query: 303 GATSVTTHDYGVVLHFT----PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
+ L+ T P+ RI ++ + N+ P + ++
Sbjct: 367 KQVETQKIEADNSLYVTGRLLPSGDVQARIQYVEESLDDDEEDSDNSNRPPRVSSQSLNS 426
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
V + G TI+L G QQ + GIP+LS IP+LG LF+++ + +
Sbjct: 427 EVYIKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475
>gi|318605712|emb|CBY27210.1| putative phage-related secreted protein [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 420
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/287 (16%), Positives = 93/287 (32%), Gaps = 21/287 (7%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205
G + S K++ LL + ++V + + EV
Sbjct: 141 SGQISPEVAVAGTASDFMNRTGDVLVYYGRKSEIKRLQTLLPLIDTASEEVIVAAYVFEV 200
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ GS + + + G F ++ S + +
Sbjct: 201 QTSERN---------GSGLALAAKLLSGKLNIQIGASGGFDNFIRVNTGSLDALYELFRT 251
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTV 322
+ ++ P L G SA+F+ G + + + + S+ GV+L P +
Sbjct: 252 DSRFHVVSSPRLRVKDGASATFSVGNEVPVLGQVSYADNRPIQSIEYRSSGVILDVKPQI 311
Query: 323 LSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
+ I L I+ ++S + P+ R+ +T V G I+L GL + +
Sbjct: 312 RTDN-IDLVIKQQLSSFAKTDTGVNNSPTLIKREVNTEVSAADGDIILLGGLAESKVTNA 370
Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
G L K G L +S + +T+I + V+ +
Sbjct: 371 DTGFSFLPK----GWL-TSSSDEKNKTDILVVLQAKKVRRASAAHAP 412
>gi|153836074|ref|ZP_01988741.1| VcsC2 [Vibrio parahaemolyticus AQ3810]
gi|149750828|gb|EDM61573.1| VcsC2 [Vibrio parahaemolyticus AQ3810]
Length = 487
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/343 (14%), Positives = 113/343 (32%), Gaps = 49/343 (14%)
Query: 69 VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
V V D A D V+ P L + N+ + + L + +
Sbjct: 177 VSVMDRNIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L + ++ ++ +++ G ++ + A ++
Sbjct: 235 LEEDEKSTKVQALPGTNALLIRGT---QEEVKLAKRIAA--------------------- 270
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
L+++ Q+ + + ++ + + +G + G F
Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGNRGIYDIVVPPFT----------- 318
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ F AL R++ E L A+ Q + F + S
Sbjct: 319 -----ETKDFVKNFQALYSNGIARSVYETNLVALENQQSQFGKKQTATLTLI--SDKQVK 371
Query: 307 VTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ L+ T +L G++ ++ E + ++ P + ++ V +
Sbjct: 372 TEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDEDDNEDSNRPPRVSSQSLNSEVYIQP 431
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
T++L G QQ + G+P++S IP+LG LF+ + ++ +
Sbjct: 432 NQTVILGGFDNTVTQQQESGVPIISSIPLLGELFKYTSESKHK 474
>gi|148826860|ref|YP_001291613.1| putative phage-like secreted protein [Haemophilus influenzae
PittGG]
gi|148718102|gb|ABQ99229.1| putative phage-related secreted protein [Haemophilus influenzae
PittGG]
Length = 377
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 53/311 (17%), Positives = 108/311 (34%), Gaps = 25/311 (8%)
Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
+ + +AH+E ++ + +S + + DT L ++ + + A +
Sbjct: 82 IKVYEKKGVVYLAHIESQPKKVMKNSFVYSPIYRDTEYLSQFLKDEEGAVSASGDKLVYY 141
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
++ S K V ++ + V + + EV+ + + G
Sbjct: 142 GKTEDIARVKSVLKGV----DVPSRE-VVVTGYVFEVQTEEKEGSGINLLAK-------- 188
Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
+ G + ++ ++ + + ++ + ++ PTL SG +F+
Sbjct: 189 -LLSGKLGINIGVKQNYENFITVNTGNLDAMIELFRTDSRFHVVSSPTLRVKSGSKGNFS 247
Query: 289 SGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
G S+ GV+ PT + I L+I ++S V
Sbjct: 248 VGSDVPVLGAVTYDRDGRAVQSIEYRSSGVIFDIQPT-IKNNAIDLKINQQLSNFVKTDT 306
Query: 345 A-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
P+ R T V L SG +VL GL ++ I + + G L K G L
Sbjct: 307 GVNQSPTLIKRDIVTDVTLKSGDIVVLGGLAENKITEGETGFSFLPK----GIL-SGRSK 361
Query: 404 NREETEIFIAA 414
+ +T+I I
Sbjct: 362 SNSKTDIVILL 372
>gi|330944277|gb|EGH46345.1| type II and III secretion system protein [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 492
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
+T +L + ++ +LS S + N N A QV
Sbjct: 194 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLANVETYLAKTNHAITQQV 253
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
V + E Q+ + +S + +S G++D +
Sbjct: 254 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 313
Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
++ A+ I + P++T ++ Q A G Y + SV +
Sbjct: 314 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 373
Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
G + P ++ I + + ++ +P+Y +
Sbjct: 374 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 433
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
V+L SG T++L+G +++ + I P L + ++ + + TP
Sbjct: 434 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 489
Query: 418 L 418
+
Sbjct: 490 V 490
>gi|33864362|ref|NP_895922.1| general (type II) secretion pathway protein D precursor
[Prochlorococcus marinus str. MIT 9313]
gi|33641142|emb|CAE22272.1| possible general (type II) secretion pathway protein D precursor
[Prochlorococcus marinus str. MIT 9313]
Length = 774
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 24/230 (10%)
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G + G A+ + + +F L A ++ + +A
Sbjct: 519 GSVATNGGRGPIVYDVTTAESSTTSAAATRTPNPALNYPDQAFYDFLRAQIISSNTKVMA 578
Query: 274 EPTLT------AISGQSASFTSGGQHLYKTVSSSTGATSVT-----------THDYGVVL 316
PTL +ISG+ + + T V + G+ L
Sbjct: 579 SPTLILSESPESISGEIGRSKANEAQVSIGDKIITSYKIVQDANGNAYCEAGFDNAGLTL 638
Query: 317 H-FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT------VELPSGGTIV 369
+ G + ++ ++S V + VR ++ V + G T++
Sbjct: 639 GAMVSKIDDNGFVTFTLEPDLSAVVGQPISTGGKCGDVRTVNSRRLETGAVRVRDGQTLI 698
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G++ D ++ P+L IP++G FR+S +R++ E+ I TP ++
Sbjct: 699 LTGVISDSDTEVVTKWPILGDIPLIGQFFRSSSGSRKKNELVIMVTPRII 748
>gi|146343920|ref|YP_001201776.1| putative type II and type III secretion system pilus protein
[Pseudomonas fluorescens SBW25]
gi|146187732|emb|CAM96060.1| putative type II and type III secretion system pilus protein
[Pseudomonas fluorescens SBW25]
Length = 550
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/294 (14%), Positives = 96/294 (32%), Gaps = 19/294 (6%)
Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
++ G+ + + + + +G + + V ++V +V
Sbjct: 254 MIGGLGDSEEAPAYIEGIRSVGIVTAGGKPSKMKVLDRYLKRAIEESTKVVNVQVEAYDV 313
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF---SVKGVLDRFSFETVLHA 262
KQ G ++ +S+ +F F + + ++
Sbjct: 314 LLTDGKQKGIDWNLLVNSTVSGNPLGLNFFNTSPKSDDPFWNVQGTYTSSKVTASALVKF 373
Query: 263 LERATAIRTLAEPTLTAISGQSA--------SFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
LE+ + +P +T +G A ++ + + T + GV
Sbjct: 374 LEQYGRVELKDQPNITVRNGVPAQIYAGEELTYIVDVEQSQDESGNVTVTPKLGRLKVGV 433
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVELPSGGTI 368
L T VL ++ + + +S + P +++ T + SG ++
Sbjct: 434 TLSVTVRVLDNDQLLVDVWPVISNLNDPDTINIGDYSFNTPRVNLKEFSTQLITSSGQSV 493
Query: 369 VLAGLLKDDIQQLKEGIPL--LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
L GL+ + + +P L IL L + + E E+ + TP LV+
Sbjct: 494 HLGGLITKRMNEAMRQLPWQNLVTKAILNPLTQGINNSLERRELVLVVTPTLVQ 547
>gi|213972108|ref|ZP_03400200.1| type II and III secretion system protein [Pseudomonas syringae pv.
tomato T1]
gi|302061568|ref|ZP_07253109.1| type II and III secretion system protein [Pseudomonas syringae pv.
tomato K40]
gi|302131100|ref|ZP_07257090.1| type II and III secretion system protein [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213923146|gb|EEB56749.1| type II and III secretion system protein [Pseudomonas syringae pv.
tomato T1]
Length = 578
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 38/245 (15%), Positives = 77/245 (31%), Gaps = 23/245 (9%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV V + E Q+ S S + +S G++D
Sbjct: 336 TQQVLFNVKVFEATLTDTDQLALNWSAVYKSLSTKWGLSLSNSVPGISSSAISGSVGIVD 395
Query: 253 RFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
+ ++ A+ I + P++T ++ Q A G Y + SV
Sbjct: 396 TANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASV 455
Query: 308 TTHDY--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRV 353
+ G + P ++ I + + ++ +P+Y
Sbjct: 456 GSSTAITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPFTSNGSSVQIPNYDA 515
Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
+ V+L SG T++L+G D++ + I P L ++ + +
Sbjct: 516 KSLSPKVKLRSGQTLILSGF--DELSDNTDKI-GTGS-PGFFGLGGGRTRMSSQSFLVVL 571
Query: 414 ATPFL 418
TP +
Sbjct: 572 ITPIV 576
>gi|167947039|ref|ZP_02534113.1| Type II secretory pathway component PulD-like protein [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 290
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 46/227 (20%), Positives = 85/227 (37%), Gaps = 25/227 (11%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
+ET + + ++ + + + QV ++VTIAEV Q G S+ GS
Sbjct: 65 AETGMIAVRTTAKKHQEIERFLTQVLDSARRQVLIEVTIAEVVLSDHFQAGVDWSLIGSD 124
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G + + + ++ G ++ L ALE ++ L+ P + ++ Q
Sbjct: 125 IGINSAMIGQ--NLLQAPLASLTLSGNINGDPLNLTLKALENFGKVKVLSSPKIMTLNNQ 182
Query: 284 SASFTSGGQHLY------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
A Q +Y + T T+V T G+VL TP V + L
Sbjct: 183 PAVLRVTDQRVYMITDVEVEEDQETKTKTRTFETTVNTVPEGLVLTVTPYVDQFDTVMLN 242
Query: 332 IQTEVS-----------EPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
I+ +S E +P ++R+ +T + + SG +
Sbjct: 243 IRPTISRILGFVEMRNQELDEANVINRVPQIQLREMETVLRVSSGDS 289
>gi|253990944|ref|YP_003042300.1| type III secretion system EscC protein [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253782394|emb|CAQ85558.1| Putative type III secretion system EscC protein [Photorhabdus
asymbiotica]
Length = 491
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 92/267 (34%), Gaps = 12/267 (4%)
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---NLLNIAG-EDQVTLKVTIAEVR 206
V + +RA ++ + + +S +V+ N L + G ++TL IA +
Sbjct: 214 VNDGEMLERAYKVKLNEGDKQKLEEAEKTSKVQVIPGTNALLVRGTPGEITLAKRIASMI 273
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALER 265
KQ+ F + ++ ++ F AD S G D F A+
Sbjct: 274 DVKGKQLMFSLKVYDVAADRTEHFGADSSMLNGSTGIYDILTLPYSATKDFLNNFQAMYS 333
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
R++ L + F V S + L+ T VL
Sbjct: 334 NGLARSVYSTNLLILENHQGHFGKKDTITVNLV--SNKEVESLKIEADNSLYVTGRVLPS 391
Query: 326 GRIG-----LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
G + + + + P + + + TI+L G +
Sbjct: 392 GGVQAKLEYIEEHFDDDKSSNQNGVSQPPKISSQSLSSEAFIKPNETIILGGFDNIETLS 451
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREE 407
+ G+P+LS IP+LG +F+N++ + +
Sbjct: 452 SESGVPVLSSIPLLGEIFKNTKLTKRK 478
>gi|237801977|ref|ZP_04590438.1| type II and III secretion system protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331024835|gb|EGI04891.1| type II and III secretion system protein [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 300
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
+T +L + ++ +LS S + N N A QV
Sbjct: 2 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLANVETYLAKTNHAITQQV 61
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
V + E Q+ + +S + +S G++D +
Sbjct: 62 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 121
Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
++ A+ I + P++T ++ Q A G Y + SV +
Sbjct: 122 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 181
Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
G + P ++ I + + ++ +P+Y +
Sbjct: 182 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 241
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
V+L SG T++L+G +++ + I P L + ++ + + TP
Sbjct: 242 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 297
Query: 418 L 418
+
Sbjct: 298 V 298
>gi|91775810|ref|YP_545566.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
gi|91709797|gb|ABE49725.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
Length = 395
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 45/274 (16%), Positives = 103/274 (37%), Gaps = 27/274 (9%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTIAEV 205
R ++ ++ + + + + + ++L ++V +K I EV
Sbjct: 133 RDQKEIGDLLKFAGAEVQAITDDVVFYRADESKQDMLKTILADLDRPANEVVVKAYIYEV 192
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
+ ++ + S G + G S + L + + ++ A +
Sbjct: 193 TNTVRD---------LNAISAAVSLLNSRLGITIENGATQSNQLKLSLPNIDVLISAFDS 243
Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPT 321
+ ++ P+L +G+++ F+ G + ++ S+ GV+L TP
Sbjct: 244 DNRFKQVSAPSLRVKNGKNSRFSVGTETPTIASTTQTNNGNPVQSIIYRPSGVILEITPK 303
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
+L+ I L I ++S P+ R+ T V G I+L GL + + +
Sbjct: 304 ILAE-TIELDITQQISSFQPTTTGVNQSPTLLKREIKTVVNTRDGELILLGGLNESRLSK 362
Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
++G+ L P LF + + E+++I +
Sbjct: 363 QRQGLSFL---P---RLFNANTDSDEKSDILLVM 390
>gi|325529582|gb|EGD06465.1| Type II secretory pathway, component PulD [Burkholderia sp. TJI49]
Length = 397
Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats.
Identities = 65/310 (20%), Positives = 113/310 (36%), Gaps = 36/310 (11%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
RD+A+L TL+ V+ V + G + S + S
Sbjct: 107 YRDVAYLSETLQPLFEGR----FAVNRQVSVPGATPSPLSSPQGSAASLVSRDSDHLVFV 162
Query: 177 ANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
+ + + + LL + +V ++ + EV+ TG S+G + S AA
Sbjct: 163 GSKAEIEKVKLLLPQIDIAMGEVMVRGVVYEVQ-------------TGDSNGSAFSLAAS 209
Query: 234 FG---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
G F + L F VL AL R +++P+L SG A+F+ G
Sbjct: 210 LLKGKLNITLAGNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPSLRVRSGAEATFSVG 269
Query: 291 GQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
+ S SV D GV+ + P + + L + ++S V
Sbjct: 270 AEVPVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQ-VRESTVDLVVDQQLSNFVQTTTG 328
Query: 346 -GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+ P+ R+ T+V++ I+L GL ++ G+ L K LFR++
Sbjct: 329 VNNSPTLTKRQLTTSVQMRDREVILLGGLTEEKTSDNSTGLSFLPK------LFRSNTSE 382
Query: 405 REETEIFIAA 414
+EI +
Sbjct: 383 ASNSEILLVI 392
>gi|294086090|ref|YP_003552850.1| type II secretion PilQ [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292665665|gb|ADE40766.1| Type II Secretion PilQ [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 822
Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats.
Identities = 45/249 (18%), Positives = 84/249 (33%), Gaps = 20/249 (8%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV +++ + V +D +QI + +G + S++ FG F++
Sbjct: 563 QVLIEIFMITVAKDFSRQINSAFRVLPSGGGNDVSEALLYGFGTGIAEARNSFNLNLTSP 622
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+ LE R ++ PT+ G++A + + + S G +
Sbjct: 623 NRELTNFFNFLETNNLARVVSSPTILVADGETAEISRVQKARVSRIEQSAGDNGTVLTNT 682
Query: 313 GVVLHFTPTVLS---------PGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVEL 362
+ P L + L ++ E + + + T
Sbjct: 683 VIDEFLAPFQLRISEVKINRINKTVQLEVELEDTRFAAALSSVTNETDETTDTITTKFWS 742
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPL----LSKI-PILGALFRNSRFNREETEIFIAATPF 417
G +VLAGL ++ G+P L I PI+G N N +E I P
Sbjct: 743 APGDVVVLAGLTRNSETATTAGVPGTTGALGAISPIIG---GNDGINNNMSETIIFMAPT 799
Query: 418 LVKPVAMRD 426
++ P A +
Sbjct: 800 VIDPSADKQ 808
>gi|260899863|ref|ZP_05908258.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037]
gi|308107338|gb|EFO44878.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037]
Length = 488
Score = 99.8 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 54/289 (18%), Positives = 97/289 (33%), Gaps = 11/289 (3%)
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184
+ + + + + + RA ++ + + N +
Sbjct: 189 QATFPGAQSLIAAAITNIGQFKNISDGELVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 248
Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
N L + G D+V L IA + +Q+ F + S+ ++F D S G
Sbjct: 249 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKENFGVDSSWVNGSRGV 308
Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
D V + F L R + E L + Q F S
Sbjct: 309 YDLVVPPFTETIDFLRNFQVLASNGIARGVYETNLLVLENQQGHFGKKQT--ATIALISN 366
Query: 303 GATSVTTHDYGVVLHFT----PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
+ L+ T P+ RI ++ + N+ P + ++
Sbjct: 367 RQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDEEDSDNSNRPPRVSSQSLNS 426
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
V + G TI+L G QQ + GIP+LS IP+LG LF+++ + +
Sbjct: 427 EVYIKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475
>gi|327538107|gb|EGF24796.1| protein containing Type II and III secretion system domain
[Rhodopirellula baltica WH47]
Length = 1062
Score = 99.8 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 56/326 (17%), Positives = 95/326 (29%), Gaps = 81/326 (24%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQ---VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-- 227
+ ++++LL Q +T++V + +QIG + + P
Sbjct: 719 VVSTTSDVHDQIVDLLESLRRLQNLQITIEVRFITLSDTFFEQIGIDFDLQFDDNAPGLP 778
Query: 228 ----------------------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
S A G + +L
Sbjct: 779 GDDSGPEITIGLDGDGTPTADLDIRLDQNSGATVPFGAPDAGAISTLGFAILSDIEAYFF 838
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDY 312
L A + + + P +T GQ AS + T + + D
Sbjct: 839 LQAAQGDSRTNVMQAPKVTLFDGQIASIQDQTSRPFVTSIVPVVGDFAVAQQPVIVVLDE 898
Query: 313 GVVLHFTPTVLSPGR-IGLRIQTEVSEP-------------------------------- 339
G L+ V R + L + S+
Sbjct: 899 GTRLNVQGVVSEDKRFVRLTLIPTFSQIGEVNEFTFQGNSTTRNTSNRNVDTNGDGVIDE 958
Query: 340 --------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
V P++ +TTV +P GGTI+L G+ + + + G+P LSKI
Sbjct: 959 EDEQEEESVTQGTTVQQPTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKI 1018
Query: 392 PILGALFRNSRFNREETEIFIAATPF 417
P + LFRN+ RE + + TP
Sbjct: 1019 PYVSRLFRNTAVGRESRSLMMMVTPR 1044
>gi|134093313|ref|YP_001098388.1| putative secretion pathway protein [Herminiimonas arsenicoxydans]
gi|133737216|emb|CAL60259.1| putative bacterial secretion pathway protein [Herminiimonas
arsenicoxydans]
Length = 656
Score = 99.8 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 50/275 (18%), Positives = 95/275 (34%), Gaps = 20/275 (7%)
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR--------D 208
+ +E + ++ N G + + V + + +
Sbjct: 306 ADNQASTAEPLAVPAAAVPVLTPAADATGN-----GPRMLLIDVVLLSTQELMATSKGIN 360
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
+L + Q +++ + G + + S+ + A ++
Sbjct: 361 LLSALTLQLGSGSTAAYSRIVTSNSLNGAKPDVSTAITRAVSIPALSYSLNI-ANANSSV 419
Query: 269 IRTLAEPTLTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
LA PTL AI G + F SG L T +G+ L TPT L
Sbjct: 420 NEVLARPTLAAIEGLPSEFFSGTNLSAGLVSTSQQGGTTIVPLDKRFGIKLSVTPTFLPQ 479
Query: 326 GRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
GR+ L+I+ + + + A+ V + G T++L+GL + +
Sbjct: 480 GRVQLKIEAQRTALNASSETSRVAYQIEIGELTANANVVMNLGETLLLSGLSEKTRTSTR 539
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
+G+P L +P++ LF N + N + I TP
Sbjct: 540 DGVPGLQDVPVVQYLFSNKKTNDLQRSALILITPR 574
>gi|145589562|ref|YP_001156159.1| type II and III secretion system protein [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145047968|gb|ABP34595.1| type II and III secretion system protein [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 759
Score = 99.4 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 16/244 (6%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
++ + + G + S+SF + S G +
Sbjct: 423 PKMASIDAVLIRTIDNQSSSYGINLLTGLTMFAGSQSFRSTGSVGGSSVSGVVQNSVIGI 482
Query: 253 RFSFETVLH------------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+ ++ A ++ + +A PTLTA+ ++F SG
Sbjct: 483 GTATSATINSVSGLVSYSLNIANSTSSNSQVIARPTLTALDRIPSTFYSGAVITAGLNGG 542
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK----A 356
+T GV L TPT + + L ++ S + V +
Sbjct: 543 GVSGAQITNIPTGVSLSVTPTFVDEESMMLAVKVSRSYVTSQNAGYGGFNASVSQDQHAV 602
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
V++ G T++L GL + L++G+P+L IPI+ F + + + + TP
Sbjct: 603 TANVKIKYGETLILDGLSSRAVSGLQDGVPVLQDIPIIQYFFNQKQQQQYSENVVVLVTP 662
Query: 417 FLVK 420
V+
Sbjct: 663 RKVQ 666
>gi|218534703|ref|YP_002424465.1| PilN protein [Yersinia pseudotuberculosis]
gi|218473172|emb|CAQ76600.1| PilN protein [Yersinia pseudotuberculosis]
Length = 543
Score = 99.4 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/251 (17%), Positives = 93/251 (37%), Gaps = 19/251 (7%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
+N N QV L V + V + Q+G + +S S + F S
Sbjct: 297 INDRNTELNRQVVLNVKVYSVEKRRQDQLGIDWNAVFTSGSIGGSLTSAFTEASTSAMTG 356
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
+ + ++AL + + + T + + G Q Y + ++
Sbjct: 357 GLSILDGKFANSKAFVNALAEQANVSLVTQQASTTTNMSAVPVQVGTQQDYASQVNTDST 416
Query: 305 TSV--------TTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEP------VIGVNAGDMP 349
+V +T G + P ++ +I L+ +S+ G ++ ++
Sbjct: 417 ANVGTSTSITKSTITTGFNMTMLPYIMPKSSQIQLQFSINMSDDPTSRTFTSGESSIELM 476
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
R++ + V L SG T+VL+G + + K+G+ G L + +++T
Sbjct: 477 KTRLKTFNQRVILSSGQTLVLSGFQQVNNTGSKQGV---GSASFFG-LGGGANGQKDDTM 532
Query: 410 IFIAATPFLVK 420
+ I TP L++
Sbjct: 533 LVILITPTLLR 543
>gi|167589098|ref|ZP_02381486.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
ubonensis Bu]
Length = 419
Score = 99.4 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 25/245 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V + G S+ + F ++ D S +
Sbjct: 172 SRQVLLNVTVLSVSLNAGDAYGIDWSLVYKTMSAGFGVTNPFTPVALTSPADLSATVLSP 231
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307
F ++ AL + +R ++T ++ Q Q Y S+T +V
Sbjct: 232 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVAKQTGYLASVSTTNTANVGS 291
Query: 308 ------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSY 351
T G + P VL G + L+ T +S G P
Sbjct: 292 STALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKDVTSSEAKGATKIQTPDV 351
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+R + + SG T+V++G + + G+ P + AL R I
Sbjct: 352 DMRNFLQRIAMKSGETLVISGYEGTNDSLDERGV----GTPKMIALGGGYEAQRTREVIV 407
Query: 412 IAATP 416
I TP
Sbjct: 408 ILITP 412
>gi|317968183|ref|ZP_07969573.1| general (type II) secretion pathway protein D precursor
[Synechococcus sp. CB0205]
Length = 729
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 16/206 (7%)
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
S + + + ++ G +V G AL A+ R A + + Q
Sbjct: 516 ASPTLIINENSEPIASGAAVTVGGSGTA--------ALNTASIGRPFANESFVTVGAQEI 567
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-- 343
+ +S +G + + G + + E+S +
Sbjct: 568 VSYTVQAGQNGAPNSCQPEFGTAGLTFGARVS---RIDDNGFVTFSMSPEISAVIATDVR 624
Query: 344 --NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
G + + R+ DT V + G T++L G++ D Q + P+L IP +G FR+
Sbjct: 625 IEGCGTVNTLTTRRLDTGEVRVRDGQTLILTGVISDYDQAVVRKWPVLGDIPFVGQFFRD 684
Query: 401 SRFNREETEIFIAATPFLVKPVAMRD 426
S RE+ E+ I +P +++ +
Sbjct: 685 SINRREKRELVILVSPRIIRDDNGGN 710
>gi|289678006|ref|ZP_06498896.1| outer-membrane type III secretion protein HrcC [Pseudomonas
syringae pv. syringae FF5]
Length = 305
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 48/144 (33%), Gaps = 6/144 (4%)
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV 336
+ Q A S ++ G L TP L ++ L + E
Sbjct: 1 LENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIED 58
Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
+ I PS R T + G++V+ G + +PLL IP +G
Sbjct: 59 GQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGK 118
Query: 397 -LFRNSRFNREETEIFIAATPFLV 419
LF++ + E TP L+
Sbjct: 119 LLFQSRSRELSQRERLFILTPRLI 142
>gi|172064947|ref|YP_001815659.1| type IVB pilus formation outer membrane protein [Burkholderia
ambifaria MC40-6]
gi|171997189|gb|ACB68106.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia ambifaria MC40-6]
Length = 577
Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 75/245 (30%), Gaps = 19/245 (7%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQ 216
A + + + S ++V ++ QV + VT+ V G
Sbjct: 301 AGSVITSPATGSIAVTDTPDVLERVGEFMDQQNRVLARQVLINVTVLSVTLSAADSYGIN 360
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ G F + + S V+ AL +
Sbjct: 361 WHAVYQALGTQFGITTAFTSMIQNPSELSASVITPSSRASSTTAVIDALSTQGTVHRKTS 420
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPG 326
++T ++ Q Q Y S+T ++ T G L P +L G
Sbjct: 421 ASITTLNDQPVPVQVAEQQGYLAQISTTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDG 480
Query: 327 RIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
I ++ + +S V +P+ R + + SG T+V++G Q
Sbjct: 481 TIMMQFYSNISSLVNLAPFGPANQQIQLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQD 540
Query: 381 LKEGI 385
++G+
Sbjct: 541 NRQGV 545
>gi|258545349|ref|ZP_05705583.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826]
gi|258519452|gb|EEV88311.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826]
Length = 111
Score = 98.3 bits (243), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+ + + E V+ S+ T V + +G TIVL G+ K E +
Sbjct: 2 VDMELNINNDELGNNVSVAGQTSFTKNTSGVKTNVLVDNGETIVLGGVYKQRQTAKTEKV 61
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
PLL IP++G F+ + E+ E+ I TP +V
Sbjct: 62 PLLGDIPVIGNAFKKNTRAFEKNEMLIFVTPRIVD 96
>gi|187736127|ref|YP_001878239.1| type II and III secretion system protein [Akkermansia muciniphila
ATCC BAA-835]
gi|187426179|gb|ACD05458.1| type II and III secretion system protein [Akkermansia muciniphila
ATCC BAA-835]
Length = 833
Score = 97.9 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 56/382 (14%), Positives = 105/382 (27%), Gaps = 122/382 (31%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFA 231
++++ QV + T EV + L+++GF G + +
Sbjct: 446 EELVAARTAEQPLQVVVSATFLEVNQTDLEELGFNWIVNLNLDPTKWFMGGAGTDKNDYN 505
Query: 232 ADFGGKFVSEGGDFSVKGVLDRF------------------------------------- 254
+ G + GV+
Sbjct: 506 NSVLDSAANVAGAVAPAGVVGGLRSGNQVFTEDSIDSMIERGTSARSSDATYVPGGAPSI 565
Query: 255 ----------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
++ L + + P++ G+ A+F SG + +Y T
Sbjct: 566 VTLRGMWSHADITMIMRGLSQKKGTDIMQHPSVIVRPGEKATFFSGRELIYPTEYDPPEV 625
Query: 305 TS------------------------------VTTHDYGVVLHFTPTVLSPGR--IGLRI 332
+ T G + + T +S + + + +
Sbjct: 626 PNSTGNNNDWGDNDNNGGGIPVMPMTPAHPSAFETRQLGTIFNVEVTGISDDKSIVEMTV 685
Query: 333 QTEVSEPVIGVNAGD----------------------------MPSYRVRKADTTVELPS 364
E+ + +N G P + R+ V + +
Sbjct: 686 VPEIVDFDGFINYGTSLFVPMVSQEKDAKEEVVMVKTSDNFILQPVFSTRRLTAPVRIAT 745
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP--- 421
G T+V+ L K ++ IP+L IP +G LFR+ + I I +V P
Sbjct: 746 GNTLVIGALKKSTSITYEDKIPVLGDIPWVGRLFRSKGSKEQRKAIIIMVKAEVVDPGGK 805
Query: 422 -VAMRDLSRPDDHYSVEDDAKA 442
+ D S PDD DA
Sbjct: 806 KLYTPDTSIPDDEV-PAGDASL 826
>gi|170698379|ref|ZP_02889453.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia ambifaria IOP40-10]
gi|170136718|gb|EDT04972.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia ambifaria IOP40-10]
Length = 577
Score = 97.9 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 74/245 (30%), Gaps = 19/245 (7%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQ 216
A + + + S ++V + QV + VT+ V G
Sbjct: 301 AGSVITSPATGSIAVTDTPDVLERVGEFMEQQNRVLARQVLINVTVLSVTLSAADSYGIN 360
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ G F + + S V+ AL +
Sbjct: 361 WHAVYQALGTQFGITTAFTSMIQNPSELSASVITPSSRASSTTAVIDALSTQGTVHRKTS 420
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPG 326
++T ++ Q Q Y S+T ++ T G L P +L G
Sbjct: 421 ASITTLNDQPVPVQVAEQQGYLAQISTTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDG 480
Query: 327 RIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
I ++ + +S V +P+ R + + SG T+V++G Q
Sbjct: 481 TIMMQFYSNISSLVNLVPFGPANQQIQLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQD 540
Query: 381 LKEGI 385
++G+
Sbjct: 541 NRQGV 545
>gi|167840260|ref|ZP_02466944.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
thailandensis MSMB43]
Length = 423
Score = 97.9 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V G S+ + + F ++ D S +
Sbjct: 175 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTNPADLSATVLSP 234
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307
F ++ AL + +R ++T ++ Q Q Y S+T +V
Sbjct: 235 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 294
Query: 308 ------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPS 350
T G + P VL G + L+ T +S G P
Sbjct: 295 STALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVSSSTGGSGAARIQTPD 354
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R V + SG T+V++G + + G+ P + AL R I
Sbjct: 355 VDMRNFLQRVAMKSGETLVISGYEGTNDSLDERGV----GTPKMIALGGGYEAQRAREVI 410
Query: 411 FIAATP 416
I TP
Sbjct: 411 VILITP 416
>gi|15667831|gb|AAL05518.1|AF399919_5 PilN [Escherichia coli]
Length = 539
Score = 97.9 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 19/242 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV L V I +R+ +Q G + S S + F
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDAITGGVSIVDGK 361
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
+ L AL + + + + + Q Y ++ +V
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421
Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
T G + P +L + + L + + G + +P+ ++ +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
TV+L SG T++++G + + K+G+ P L S + TP
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGSTVKTATPFSVVLITPN 537
Query: 418 LV 419
++
Sbjct: 538 II 539
>gi|167838357|ref|ZP_02465216.1| putative bacteriophage-related lipoprotein [Burkholderia
thailandensis MSMB43]
Length = 420
Score = 97.9 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 22/230 (9%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+V ++ + EV S+ + + + +
Sbjct: 202 TAPGEVVVRGWVYEVANTDSAN---------SAWSIAVRLLSGQLRLSSGDTSSDASAMR 252
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGAT 305
+ + AL + + ++ P + +SG+ G Q + SS T
Sbjct: 253 FTGPGVDAAISALNADSRFKVVSSPHVRIVSGEHVRLNVGQQVPTQSSVSYQGSSGTPVQ 312
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
S+T D G++ PTV+ I L+++ E+S+ V P+ R+ T L
Sbjct: 313 SITYQDAGLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLRD 371
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
G +VL GL++D + G L P + F +++ TE+ +
Sbjct: 372 GELVVLGGLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 415
>gi|115360623|ref|YP_777760.1| type IVB pilus formation outer membrane protein [Burkholderia
ambifaria AMMD]
gi|115285951|gb|ABI91426.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia ambifaria AMMD]
Length = 577
Score = 97.5 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 74/245 (30%), Gaps = 19/245 (7%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQ 216
A + + + S ++V + QV + VT+ V G
Sbjct: 301 AGSVITSPATGSIAVTDTPDVLERVGEFMEQQNRVLARQVLINVTVLSVTLSAADSYGIN 360
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ G F + + S V+ AL +
Sbjct: 361 WHAVYQALGTQFGITTAFTSMIQNPSELSASVITPSSRASSTTAVIDALSTQGTVHRKTS 420
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPG 326
++T ++ Q Q Y S+T ++ T G L P +L G
Sbjct: 421 ASITTLNDQPVPVQVAEQQGYLAQISTTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDG 480
Query: 327 RIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
I ++ + +S V +P+ R + + SG T+V++G Q
Sbjct: 481 TIMMQFYSNISSLVNLVPFGPANQQIQLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQD 540
Query: 381 LKEGI 385
++G+
Sbjct: 541 NRQGV 545
>gi|329847987|ref|ZP_08263015.1| bacterial type II and III secretion system family protein
[Asticcacaulis biprosthecum C19]
gi|328843050|gb|EGF92619.1| bacterial type II and III secretion system family protein
[Asticcacaulis biprosthecum C19]
Length = 545
Score = 97.5 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 51/274 (18%), Positives = 94/274 (34%), Gaps = 6/274 (2%)
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
E + + ++ V + + DQ+++ V I + IG
Sbjct: 213 EAAAPMHVRISDLVRTEDAATPVSDGPEVPVAPDQISVDVAIILSQTSQRDSIGINLLDG 272
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTA 279
++ +S G + +V + ++ R + +A P LTA
Sbjct: 273 LTAQYGLQSQRTTTGDAQGNRNMQRTVTEAISIPQLTYNMNLFNRFGQYYQVVARPMLTA 332
Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
G+ A F G K + + + T D G + TP ++ LRI+ S
Sbjct: 333 YRGEPADFFVGRS--AKVAVTGVNFSQLETIDIGTQIKVTPVEITATGTRLRIEVTRSFL 390
Query: 340 VIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
S + TTVE+ G T++L+GL + PL+ +P++G+
Sbjct: 391 SGEPAGNFNESLNTWRQTVSTTVEVAFGTTLILSGLSESVRDSSTTKTPLVGDVPVVGSA 450
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
F + + + TP A +RP
Sbjct: 451 FNRRITTDKRDAVLVLVTPSPSMAFAGPQWARPA 484
>gi|254262815|ref|ZP_04953680.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei 1710a]
gi|254213817|gb|EET03202.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei 1710a]
Length = 589
Score = 97.5 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S ++V + QV L VT+ V G ++
Sbjct: 309 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 368
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
+ F ++ D S + F ++ AL + +R ++
Sbjct: 369 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 428
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
T ++ Q Q Y S+T +V + G + P VL G +
Sbjct: 429 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 488
Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
L+ T +S E + P +R V + SG T+V++G +
Sbjct: 489 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 548
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ G+ P + AL R I I TP
Sbjct: 549 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 582
>gi|269469298|gb|EEZ80806.1| Type II secretory component HofQ [uncultured SUP05 cluster
bacterium]
Length = 85
Score = 97.5 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 31/75 (41%)
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+ P+ R+ TT+ + +V+ G+ +P +P++G LF + +
Sbjct: 11 SNTAPAINKREITTTLLVKDNTIVVIGGVFTQTTVDATNKVPFFGDLPLIGGLFSYKKDS 70
Query: 405 REETEIFIAATPFLV 419
E+ I P ++
Sbjct: 71 DVRKELLIFLAPRII 85
>gi|281355619|ref|ZP_06242113.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
gi|281318499|gb|EFB02519.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
Length = 540
Score = 97.5 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 74/464 (15%), Positives = 144/464 (31%), Gaps = 89/464 (19%)
Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
+ + V + P+ A + ++ R + + A DG ++ D L
Sbjct: 101 NAKRVDQNQPSVAALKFNNGRKLLIV-----SAEACRFEDDGYGESIDKLVERLDQPGLT 155
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
+ R I ++ L MV E+ + + N
Sbjct: 156 ASSGRP---KFIYFPKINSAATLKKMVS---------EVGASAIDVEFDNGVDKLIVDGG 203
Query: 185 MNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
+N L +A ++ + + E+ + +IG ++ G
Sbjct: 204 LNALFVAAPFWSWKHISNMLAQYDRPIPEIRFRYKVVEIFAENDDKIGLDFQSWKNNDGA 263
Query: 227 SK---------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
++A+ FG + G + + + L R L L
Sbjct: 264 DFFSAGGRFRSNWASTFGAGVNNSGSSKTEFFNFNPKWNSKYIDFLTSRGKARVLTSGVL 323
Query: 278 TAISGQSASFTSGGQHLYKTVSSS----------------------------TGATSVTT 309
A + + S G Y VS G +T
Sbjct: 324 NAKNRTTTSINVGSGLFYDDVSQKIEPGNTGRLPAPFAGEPDVPDAGKLEIRKGQQQITK 383
Query: 310 HDYGV--VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSGG 366
G L +++ L++ E S +IG ++ P + +T V++ SG
Sbjct: 384 VGEGFRFSLDLVEPIVTANSTTLKLHAE-SVSLIGWDSSGEPRLNKSEIETEVQIGNSGK 442
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
V+ GL K DI + G+PLL +P+LG LF + ++++I I A +
Sbjct: 443 NFVIGGLRKFDIVRGVAGVPLLKDLPLLGWLFSTESESTKKSQIVIL---------ASAE 493
Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
S P D + +A ++ + + + ++ G
Sbjct: 494 YSTPFDPV--PTEIQANV-GKIVEDVRAGVRNPLNNLGFE-QYG 533
>gi|190570911|ref|YP_001975269.1| type II secretion system protein, putative [Wolbachia endosymbiont
of Culex quinquefasciatus Pel]
gi|190357183|emb|CAQ54599.1| type II secretion system protein, putative [Wolbachia endosymbiont
of Culex quinquefasciatus Pel]
Length = 488
Score = 97.5 bits (241), Expect = 5e-18, Method: Composition-based stats.
Identities = 56/430 (13%), Positives = 127/430 (29%), Gaps = 100/430 (23%)
Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
I + V V+D+L+ ++ S + + K G + L + +++
Sbjct: 76 SINVDEKVPVKDLLI------EIGKLSDINLDIDPKISGNITLKLKDKNINEVIQNIANS 129
Query: 117 ---ERDIAHLEMTLRRFIADSN------IRV-EMVSDTVVLHGMVRTIQDSQRAVEL--- 163
+ + + + + + + I + V+ G V + + +
Sbjct: 130 AKLRYSMNNGVIRIEQDLPYAQNYYVDFINIQHSAQSNFVVSGNVTSSDADRNVRKSQYS 189
Query: 164 -----------------------------SETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
E + + + + ++ +N +
Sbjct: 190 SDLWSSLEKGLNAIMDVNGVDDGEFLSSNREAGVIILNARKDIHKAVEEYINKVKKLASS 249
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
QV ++ I EV D G + + + + + S+ ++
Sbjct: 250 QVMIEAKIVEVVLDDKYLSGINLNDLHNKTKSITNQDS-------------SITSLVMNS 296
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TS 306
E ++ L++ ++ P + AI+ Q A + H+Y T T
Sbjct: 297 DLENLVKTLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSDIQKDTGNSNHALITK 356
Query: 307 VTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---------------GDMPS 350
+ + GVVL P++ I + I +S D+P
Sbjct: 357 MNSTPIGVVLIIHPSINIDTNEIFMDIHPTLSRINNYTKDPNIEYVAQQNKMKLNSDIPI 416
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET-E 409
R+ +T+++ SG +V+ GL++ L +T E
Sbjct: 417 IETREMHSTLKIKSGEVMVIGGLIEHRKDNQ--------------NLLHQKSKKLAKTVE 462
Query: 410 IFIAATPFLV 419
I +V
Sbjct: 463 TVIFLKATIV 472
>gi|270487709|ref|ZP_06204783.1| conserved domain protein [Yersinia pestis KIM D27]
gi|270336213|gb|EFA46990.1| conserved domain protein [Yersinia pestis KIM D27]
Length = 171
Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 49/136 (36%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
K+I + + I++V ++ V VS AD + ++ ++ K G A
Sbjct: 10 FENSANAKQIYLPIGGSHIIKVQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 69
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
L + + + +L+ I +R DS I + + ++ +L G T +
Sbjct: 70 LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 129
Query: 161 VELSETFLSQSGRNQY 176
+ + +
Sbjct: 130 ASIVGEATASKKEKRE 145
>gi|226198442|ref|ZP_03794010.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei Pakistan 9]
gi|225929499|gb|EEH25518.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei Pakistan 9]
Length = 590
Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S ++V + QV L VT+ V G ++
Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
+ F ++ D S + F ++ AL + +R ++
Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
T ++ Q Q Y S+T +V + G + P VL G +
Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489
Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
L+ T +S E + P +R V + SG T+V++G +
Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ G+ P + AL R I I TP
Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583
>gi|254194313|ref|ZP_04900745.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei S13]
gi|254301386|ref|ZP_04968830.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei 406e]
gi|157811498|gb|EDO88668.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei 406e]
gi|169651064|gb|EDS83757.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei S13]
Length = 590
Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S ++V + QV L VT+ V G ++
Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
+ F ++ D S + F ++ AL + +R ++
Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
T ++ Q Q Y S+T +V + G + P VL G +
Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489
Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
L+ T +S E + P +R V + SG T+V++G +
Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ G+ P + AL R I I TP
Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583
>gi|254186932|ref|ZP_04893448.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei Pasteur 52237]
gi|157934616|gb|EDO90286.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei Pasteur 52237]
Length = 590
Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S ++V + QV L VT+ V G ++
Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
+ F ++ D S + F ++ AL + +R ++
Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
T ++ Q Q Y S+T +V + G + P VL G +
Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489
Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
L+ T +S E + P +R V + SG T+V++G +
Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ G+ P + AL R I I TP
Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583
>gi|53722623|ref|YP_111608.1| type IV pilus biosynthesis protein [Burkholderia pseudomallei
K96243]
gi|52213037|emb|CAH39075.1| putative type IV pilus biosynthesis protein [Burkholderia
pseudomallei K96243]
Length = 589
Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S ++V + QV L VT+ V G ++
Sbjct: 309 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 368
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
+ F ++ D S + F ++ AL + +R ++
Sbjct: 369 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 428
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
T ++ Q Q Y S+T +V + G + P VL G +
Sbjct: 429 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 488
Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
L+ T +S E + P +R V + SG T+V++G +
Sbjct: 489 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 548
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ G+ P + AL R I I TP
Sbjct: 549 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 582
>gi|53716205|ref|YP_106188.1| putative type IV pilus biogenesis protein PilN [Burkholderia mallei
ATCC 23344]
gi|124381791|ref|YP_001025775.1| type IVB pilus formation outer membrane protein [Burkholderia
mallei NCTC 10229]
gi|126447055|ref|YP_001077859.1| type IVB pilus formation outer membrane protein [Burkholderia
mallei NCTC 10247]
gi|126457943|ref|YP_001076206.1| type IVB pilus formation outer membrane protein [Burkholderia
pseudomallei 1106a]
gi|167003979|ref|ZP_02269757.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia mallei PRL-20]
gi|237509279|ref|ZP_04521994.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei MSHR346]
gi|242311526|ref|ZP_04810543.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei 1106b]
gi|254205031|ref|ZP_04911384.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia mallei JHU]
gi|254359153|ref|ZP_04975425.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia mallei 2002721280]
gi|52422175|gb|AAU45745.1| putative type IV pilus biogenesis protein PilN [Burkholderia mallei
ATCC 23344]
gi|126231711|gb|ABN95124.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei 1106a]
gi|126239909|gb|ABO03021.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia mallei NCTC 10247]
gi|147754617|gb|EDK61681.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia mallei JHU]
gi|148028340|gb|EDK86300.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia mallei 2002721280]
gi|235001484|gb|EEP50908.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei MSHR346]
gi|242134765|gb|EES21168.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei 1106b]
gi|243060570|gb|EES42756.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia mallei PRL-20]
gi|261826504|gb|ABM99280.2| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia mallei NCTC 10229]
Length = 590
Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S ++V + QV L VT+ V G ++
Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
+ F ++ D S + F ++ AL + +R ++
Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
T ++ Q Q Y S+T +V + G + P VL G +
Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489
Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
L+ T +S E + P +R V + SG T+V++G +
Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ G+ P + AL R I I TP
Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583
>gi|134282150|ref|ZP_01768856.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei 305]
gi|134246679|gb|EBA46767.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei 305]
Length = 589
Score = 97.1 bits (240), Expect = 6e-18, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S ++V + QV L VT+ V G ++
Sbjct: 309 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 368
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
+ F ++ D S + F ++ AL + +R ++
Sbjct: 369 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 428
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
T ++ Q Q Y S+T +V + G + P VL G +
Sbjct: 429 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 488
Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
L+ T +S E + P +R V + SG T+V++G +
Sbjct: 489 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 548
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ G+ P + AL R I I TP
Sbjct: 549 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 582
>gi|126443441|ref|YP_001063251.1| type IVB pilus formation outer membrane protein [Burkholderia
pseudomallei 668]
gi|126222932|gb|ABN86437.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei 668]
Length = 590
Score = 97.1 bits (240), Expect = 6e-18, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S ++V + QV L VT+ V G ++
Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
+ F ++ D S + F ++ AL + +R ++
Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
T ++ Q Q Y S+T +V + G + P VL G +
Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489
Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
L+ T +S E + P +R V + SG T+V++G +
Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ G+ P + AL R I I TP
Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583
>gi|53720957|ref|YP_109943.1| putative bacteriophage-related lipoprotein [Burkholderia
pseudomallei K96243]
gi|52211371|emb|CAH37360.1| putative bacteriophage-related lipoprotein [Burkholderia
pseudomallei K96243]
Length = 458
Score = 97.1 bits (240), Expect = 6e-18, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 22/230 (9%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+V ++ + EV S+ + + + +
Sbjct: 240 TAPGEVVVRGWVYEVANTDSAN---------SAWSIAVRLLSGQLRLSSGDTSSDASAMR 290
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGAT 305
+ + AL + + ++ P + +SG+ G Q + SS T
Sbjct: 291 FTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQ 350
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
S+T D G++ PTV+ I L+++ E+S+ V P+ R+ T L
Sbjct: 351 SITYQDAGLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKD 409
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
G +VL GL++D + G L P + F +++ TE+ +
Sbjct: 410 GELVVLGGLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 453
>gi|254253693|ref|ZP_04947010.1| Type II secretory pathway component PulD [Burkholderia dolosa
AUO158]
gi|124898338|gb|EAY70181.1| Type II secretory pathway component PulD [Burkholderia dolosa
AUO158]
Length = 578
Score = 96.7 bits (239), Expect = 7e-18, Method: Composition-based stats.
Identities = 36/245 (14%), Positives = 72/245 (29%), Gaps = 19/245 (7%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQ 216
+ + + S ++V + QV + VT+ V G
Sbjct: 302 VGSVVTSPATGSISVTDTPDVLERVGEFMEQQNRVLARQVLINVTVLSVTLSAQDSYGIN 361
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
+ G F + + S ++ AL +
Sbjct: 362 WHAVYQALGTQFGITTAFTSMIQNPSELSATVITPSSRASSTTAIIDALSTQGTVHRKTS 421
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPG 326
++T ++ Q Q Y S+T ++ T G L P +L G
Sbjct: 422 ASITTLNDQPVPVQVAEQQGYLAQISTTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDG 481
Query: 327 RIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
I ++ + +S V +P+ R + + SG T+V++G
Sbjct: 482 TIMMQFYSNISSLVNLVPFGPANQQIQLPTVDTRNFLQRIAVKSGQTLVISGYEGITDLD 541
Query: 381 LKEGI 385
++G+
Sbjct: 542 NRQGV 546
>gi|167573379|ref|ZP_02366253.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
oklahomensis C6786]
Length = 411
Score = 96.7 bits (239), Expect = 7e-18, Method: Composition-based stats.
Identities = 50/277 (18%), Positives = 86/277 (31%), Gaps = 28/277 (10%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLL---NIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S ++V + N A QV L VT+ V G S+
Sbjct: 132 VASPATGSISVTDTPDVLERVAAFMAQQNRALSRQVLLNVTVLSVSLSAGDAYGIDWSLV 191
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
+ F ++ + S + F ++ AL + +R ++
Sbjct: 192 YHTLSAKFGIVNAFKPVSLTPTAELSATVLSPTSRFNGTSLLIRALSQQGQVRRKTSASV 251
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
++ Q Q Y S+T +V + G + P VL G +
Sbjct: 252 MTLNNQPVPVQVATQVGYLASVSTTNTANVGSSTALTPGSVTTGFNMTLLPHVLDDGTVM 311
Query: 330 LRIQTEVSEP----------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
L+ T +S G P +R V + SG T+V++G +
Sbjct: 312 LQFSTNISSLLALKNVASSTGGGAMQIQTPDIDMRNFLQRVAMKSGETLVISGYEGTNDS 371
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ G+ P + AL R I I TP
Sbjct: 372 LDERGV----GAPKMIALGGGYEAQRAREVIVILITP 404
>gi|134283528|ref|ZP_01770228.1| putative bacteriophage-related lipoprotein [Burkholderia
pseudomallei 305]
gi|134245277|gb|EBA45371.1| putative bacteriophage-related lipoprotein [Burkholderia
pseudomallei 305]
Length = 447
Score = 96.7 bits (239), Expect = 7e-18, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 22/230 (9%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+V ++ + EV S+ + + + +
Sbjct: 229 TAPGEVVVRGWVYEVANTDSAN---------SAWSIAVRLLSGQLRLSSGDTSSDASAMR 279
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGAT 305
+ + AL + + ++ P + +SG+ G Q + SS T
Sbjct: 280 FTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQ 339
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
S+T D G++ PTV+ I L+++ E+S+ V P+ R+ T L
Sbjct: 340 SITYQDAGLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKD 398
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
G +VL GL++D + G L P + F +++ TE+ +
Sbjct: 399 GELVVLGGLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 442
>gi|157159048|ref|YP_001462784.1| type II/III secretion system protein [Escherichia coli E24377A]
gi|157081078|gb|ABV20786.1| type II/III secretion system protein [Escherichia coli E24377A]
Length = 406
Score = 96.7 bits (239), Expect = 7e-18, Method: Composition-based stats.
Identities = 61/319 (19%), Positives = 108/319 (33%), Gaps = 19/319 (5%)
Query: 112 LDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
+D + A E L+ + R VE + + G + Q + +T+ +
Sbjct: 96 VDYIYSHTPAAPEEPLKSLVYTPRYRTVEYLHQALSGLGQLPAAQQPVQGANGEQTWQAV 155
Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQV-----TLKVTIAEVRRDILKQIGFQHS-ITGSSS 224
S ++ ++S + + V + V EV Q S GS
Sbjct: 156 SSGTRFISASGDVFVFRGTAREVELVRQLLPQIDVRAQEVSV-AGYVFEVQTSERNGSGL 214
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ + +S L S + + + + ++ P L ISG+
Sbjct: 215 ALAAELLSGRFSITMSSASGLDNFIRLSTGSVDAMYELFRTDSRFQVVSSPRLRVISGKE 274
Query: 285 ASFTSGGQHLYKTVSSST---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
A F+ G + S SV G + PTV IGL I ++S
Sbjct: 275 AVFSVGSDVPVLSSVSWQDKVPVQSVEYRSSGAIFRVKPTVTQD-VIGLDIVQQLSNFAK 333
Query: 342 GVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
+ P+ R+ T+V L G IVL GL ++ + + G+ L + F +
Sbjct: 334 TDTGVNNTPTLIKREVSTSVSLNDGDIIVLGGLAENKTSKARTGLSFLPDV------FGS 387
Query: 401 SRFNREETEIFIAATPFLV 419
R +T+I + V
Sbjct: 388 DSDERAKTDIIVVLQARRV 406
>gi|257142072|ref|ZP_05590334.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
thailandensis E264]
Length = 586
Score = 96.7 bits (239), Expect = 8e-18, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 26/246 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V G S+ + + F +++ D S +
Sbjct: 338 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTKPADLSATVLSP 397
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
F ++ AL + +R ++T ++ Q Q Y S+T +V +
Sbjct: 398 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 457
Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----------GVNAGDMPS 350
G + P VL G + L+ T +S + P
Sbjct: 458 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSSTGGRSAARIQTPD 517
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R V + SG T+V++G + + G+ P + AL R I
Sbjct: 518 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 573
Query: 411 FIAATP 416
I TP
Sbjct: 574 VILITP 579
>gi|113955379|ref|YP_731905.1| general secretion pathway protein D [Synechococcus sp. CC9311]
gi|113882730|gb|ABI47688.1| possible general (type II) secretion pathway protein D precursor
[Synechococcus sp. CC9311]
Length = 732
Score = 96.7 bits (239), Expect = 8e-18, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 7/163 (4%)
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
AL+ AT R+ A + + Q S +S +G +
Sbjct: 545 SALQTATIGRSKANESFVTVGTQETVNYSVSAGQNGAPNSCQPILGTAGLTFGARVS--- 601
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADT-TVELPSGGTIVLAGLLKD 376
+ G + + ++ N VR+ DT ++ + G T++L G++ D
Sbjct: 602 KIDDNGFVSFSLSPTIAAVTGTQNVEGCGPRSILSVRRLDTGSLRVRDGQTLILTGVISD 661
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
Q P+L +P++G FR S +R + E+ + TP ++
Sbjct: 662 RDAQQVRKWPILGDLPLIGQFFRESTRDRAKRELVVLVTPKII 704
>gi|167817938|ref|ZP_02449618.1| putative bacteriophage-related lipoprotein [Burkholderia
pseudomallei 91]
Length = 403
Score = 96.3 bits (238), Expect = 9e-18, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 22/230 (9%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
+V ++ + EV S+ + + + +
Sbjct: 185 TAPGEVVVRGWVYEVANTDSAN---------SAWSIAVRLLSGQLRLSSGDTSSDASAMR 235
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGAT 305
+ + AL + + ++ P + +SG+ G Q + SS T
Sbjct: 236 FTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQ 295
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
S+T D G++ PTV+ I L+++ E+S+ V P+ R+ T L
Sbjct: 296 SITYQDAGLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKD 354
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
G +VL GL++D + G L P + F +++ TE+ +
Sbjct: 355 GELVVLGGLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 398
>gi|167566274|ref|ZP_02359190.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
oklahomensis EO147]
Length = 409
Score = 96.3 bits (238), Expect = 9e-18, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 77/245 (31%), Gaps = 25/245 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V G S+ + F ++ + S +
Sbjct: 162 SRQVLLNVTVLSVSLSAGDAYGIDWSLVYHTLSAKFGIVNAFKPVSLTPTAELSATVLSP 221
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
F ++ AL + +R ++ ++ Q Q Y S+T +V +
Sbjct: 222 TSRFNGTSLLIRALSQQGQVRRKTSASVMTLNNQPVPVQVATQVGYLASVSTTNTANVGS 281
Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSY 351
G + P VL G + L+ T +S G P
Sbjct: 282 STALTPGSVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLALKNVASSTGGGAMQIQTPDI 341
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+R V + SG T+V++G + + G+ P + AL R I
Sbjct: 342 DMRNFLQRVAMKSGETLVISGYEGTNDSLDERGV----GAPKMIALGGGYEAQRAREVIV 397
Query: 412 IAATP 416
I TP
Sbjct: 398 ILITP 402
>gi|313681304|ref|YP_004059042.1| type ii and iii secretion system protein [Sulfuricurvum kujiense
DSM 16994]
gi|313154164|gb|ADR32842.1| type II and III secretion system protein [Sulfuricurvum kujiense
DSM 16994]
Length = 481
Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 94/240 (39%), Gaps = 19/240 (7%)
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDR 253
+++I +V +G S+ S + SF A G S G F + D
Sbjct: 239 EISIYDVELKDNYALGIDWSLVPSLAKDGLSFVASATGSLGSAGASAVPLTFGMIMKNDT 298
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------AT 305
++ + +++ALE + ++ P L ++G + T G + Y + +T +T
Sbjct: 299 YNGKALVNALENFGKVESVQRPKLLGLAGTNVKLTDGVEAPYISGIQNTSVGNGTAQVST 358
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIG-----LRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
+ T G+ ++ +L I + + + N P + + T+
Sbjct: 359 TSATALSGLEINLKSNMLDGTVITDIGLKINDIVGYTSFEVNGNKFSQPQTVTKAINNTM 418
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G IV++GL ++ + G+P L G + + ++E+ I TP ++K
Sbjct: 419 RVQPGVPIVISGLFRNKSDKGWNGLPGLGDS-AAGVVGGARHTSNTKSEMVIVVTPRVIK 477
>gi|167575154|ref|ZP_02368028.1| putative bacteriophage-related lipoprotein [Burkholderia
oklahomensis C6786]
Length = 446
Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/271 (16%), Positives = 91/271 (33%), Gaps = 22/271 (8%)
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
I + AV + + + + + +V ++ + EV
Sbjct: 187 TASDIAAAPVAVGVQARGNELVIVGSHDEVAMLRKLVPELDTAPGEVVVRGWVYEVANT- 245
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
S+ + + + + + + AL +
Sbjct: 246 --------GSANSAWSIAVRLLSGQLRLSSGDTASDTSAMRFTGPGVDAAISALNADSRF 297
Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ ++ P + +SG+ G Q + S+ T S+T D G++ PTV+
Sbjct: 298 KVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQDAGLIFDVEPTVMR 357
Query: 325 PGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
I L+++ E+S+ V P+ R+ T L G +VL GL++D +
Sbjct: 358 D-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARS 416
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAA 414
G L P + F +++ TE+ +
Sbjct: 417 GYSWL---P---SFFDGRSSSKQRTEVLLVL 441
>gi|254244616|ref|ZP_04937938.1| PilN [Pseudomonas aeruginosa 2192]
gi|126197994|gb|EAZ62057.1| PilN [Pseudomonas aeruginosa 2192]
Length = 569
Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
++++N N + QV L V + V Q+G ++ S
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
+S + ++ AL + + T+ P++T ++ QSA
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435
Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
Q ST + G + P V+ G I + + G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ PSY ++ D V L SG T+VL+G D + + G
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 550
Query: 403 FNREETE-IFIAATPFLV 419
+ E I + TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568
>gi|126441103|ref|YP_001059995.1| Type II secretory pathway, component PulD [Burkholderia
pseudomallei 668]
gi|126220596|gb|ABN84102.1| type II secretory pathway, component PulD [Burkholderia
pseudomallei 668]
Length = 394
Score = 95.6 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 51/226 (22%), Positives = 81/226 (35%), Gaps = 20/226 (8%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
QV ++ + EV + FQ ++ S + G + L
Sbjct: 178 QVAVRAWVYEVSKQEDNNSAFQLALRLLGGRVGASIGSGTIGDDSNA-------IRLRAG 230
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTT 309
FE + AL + R + P L SGQ A G +S SV
Sbjct: 231 GFEAAIAALNSDSRFRVVTSPNLRVRSGQLARLNVGQSVPVVGSVSYPSASGAPVQSVQY 290
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTI 368
D GV+ PTV + I L + E+S+ V + P+ RK +++ + G +
Sbjct: 291 QDAGVIFQVQPTVKAS-AIDLNVIEEISDFVRTTTGVNNSPTKNTRKLESSFSVEDGDAV 349
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
++ GL +D L G+ L P + R N TEI +
Sbjct: 350 LIGGLTQDKESHLDSGLSFL---P---SWMRGRASNSSRTEILLLL 389
>gi|281356848|ref|ZP_06243338.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
gi|281316406|gb|EFB00430.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
Length = 574
Score = 95.6 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/298 (15%), Positives = 79/298 (26%), Gaps = 68/298 (22%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------- 233
K++ ++ QV L + + EV + ++G ++ G
Sbjct: 256 KMLAQYDVPIP-QVRLNIKVYEVYSENNDKMGIDFQSWKNNEGADFFSVGGRYRNNWAAA 314
Query: 234 -FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ--------- 283
GG S G + + + L L + + L +
Sbjct: 315 YSGGMARSFGSERTSFYNFNPKWNTRYLDFLASKGRAKVVHTGELCVRNNTSAQLSRTTQ 374
Query: 284 ---------------SASFTSGGQHLYKTV------------------------------ 298
+ + +
Sbjct: 375 IFYIDTSKPVNNAIIPGTTLDPSGNPFPDTGVGPYELLSGLAGKLFDKSIDKPGKDSADL 434
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKAD 357
S G +TT G T S R ++ IG + P A
Sbjct: 435 SYGKGNQQITTAFTGFGFTMTVNNASVNLEETRFNVTLNNTSLIGFASNGTPRISKGNAV 494
Query: 358 TT-VELPSG-GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
T V LP G + V+ GL K + + + G+P L IP LG LF + E+ +
Sbjct: 495 TQDVSLPHGKDSFVIGGLRKQETVKSRTGVPWLMDIPYLGYLFSTESNSVRHAELIVV 552
>gi|224827067|ref|ZP_03700164.1| type II and III secretion system protein [Lutiella nitroferrum
2002]
gi|224600733|gb|EEG06919.1| type II and III secretion system protein [Lutiella nitroferrum
2002]
Length = 427
Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 57/309 (18%), Positives = 99/309 (32%), Gaps = 32/309 (10%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
RD+A+L LR + + V + + + + Q
Sbjct: 133 YRDLAYLTELLRPLFKNGSFTV-----NRTVRAAPGNASSTPAPSGTAAALIDQKSDVMV 187
Query: 177 ANSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
++ ++ L + +V +K + EV + GFQ ++ S
Sbjct: 188 FQGTAAEIDMLKRVLPQVDTAMGEVLVKGVVYEVSTGQNEASGFQLAL---------SLL 238
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
G + L + + + AL + + ++ P L SG+SAS T G
Sbjct: 239 GGKLGVTIGTPPKGDNAITLKTGAIDAAIGALAGDSRFKVVSTPYLRVKSGRSASLTVGQ 298
Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA- 345
T S+ GV+ + P + I L + +VS V
Sbjct: 299 DVPVLGSVSYPQGGGTPVRSIEYKSSGVIFNIAPQ-VRDRTIDLEVSQQVSNFVKTETGV 357
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
D P+ R+ T V G IVL GL + + G+ L R +
Sbjct: 358 DDSPTLIKRELRTHVSALDGELIVLGGLRDEKDNASRTGLSFLPD------FLRARSSSS 411
Query: 406 EETEIFIAA 414
+TEI +
Sbjct: 412 NQTEILLML 420
>gi|330882527|gb|EGH16676.1| general secretion pathway protein D [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 635
Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/214 (18%), Positives = 68/214 (31%), Gaps = 15/214 (7%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G +++ S R + + + L+ QV ++ I EV
Sbjct: 417 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 475
Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
+G Q S T + + G + + + + L
Sbjct: 476 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 535
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT------VSSSTGATSVTTHDYGV 314
ALE + L+ P+L ++ Q A G S++T +SV GV
Sbjct: 536 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 595
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
+L P + G + + IQ +VS N D
Sbjct: 596 ILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDA 629
>gi|91210748|ref|YP_540734.1| putative phage-related secreted protein [Escherichia coli UTI89]
gi|149365806|ref|ZP_01887841.1| putative phage-related secreted protein [Yersinia pestis CA88-4125]
gi|165927175|ref|ZP_02223007.1| putative phage-related secreted protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938242|ref|ZP_02226801.1| putative phage-related secreted protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|165938650|ref|ZP_02227206.1| putative phage-related secreted protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|167422164|ref|ZP_02313917.1| putative phage-related secreted protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167466986|ref|ZP_02331690.1| putative phage-related secreted protein [Yersinia pestis FV-1]
gi|191174647|ref|ZP_03036128.1| type II/III secretion system protein [Escherichia coli F11]
gi|218929372|ref|YP_002347247.1| putative phage-related secreted protein [Yersinia pestis CO92]
gi|229837795|ref|ZP_04457954.1| General secretion pathway protein D [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229898356|ref|ZP_04513503.1| General secretion pathway protein D [Yersinia pestis biovar
Orientalis str. India 195]
gi|91072322|gb|ABE07203.1| putative phage-related secreted protein [Escherichia coli UTI89]
gi|115347983|emb|CAL20908.1| putative phage-related secreted protein [Yersinia pestis CO92]
gi|149292219|gb|EDM42293.1| putative phage-related secreted protein [Yersinia pestis CA88-4125]
gi|165913524|gb|EDR32145.1| putative phage-related secreted protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|165913903|gb|EDR32521.1| putative phage-related secreted protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920843|gb|EDR38091.1| putative phage-related secreted protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|166958976|gb|EDR55997.1| putative phage-related secreted protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|190905074|gb|EDV64732.1| type II/III secretion system protein [Escherichia coli F11]
gi|229688646|gb|EEO80715.1| General secretion pathway protein D [Yersinia pestis biovar
Orientalis str. India 195]
gi|229694161|gb|EEO84208.1| General secretion pathway protein D [Yersinia pestis biovar
Orientalis str. PEXU2]
Length = 414
Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/338 (17%), Positives = 111/338 (32%), Gaps = 33/338 (9%)
Query: 95 GQANVILIGHDG----KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G N+ + G + + R R S+I VS + G
Sbjct: 77 GNMNIRIWTKKGVDFIAPYTPKEPVKPRYTWTYTPQYRSVAYLSDILGGYVSGSFNNSGA 136
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG----EDQVTLKVTIAEVR 206
V + + + S Y + + + D+V + + EV+
Sbjct: 137 VISDDSLKGSSGASNYINRTGDILVYYGTKEDIAILKTLVTSLDTMSDEVVVSGYVFEVQ 196
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
G + S + S A F++ + S + + + L+
Sbjct: 197 TSQSDGSGILLAAKILSDKFNISVGAAGLDNFIN----------IRTGSIDAIFNLLKTD 246
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
+ ++ P L + SASF+ G TV+++T SV GV+ + TP+ +
Sbjct: 247 SRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVLFNVTPS-I 305
Query: 324 SPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ L+IQ ++S V + P+ R T V L G I+L GL + +
Sbjct: 306 KSRTMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQKDSKAS 365
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G + F + +T+I + V
Sbjct: 366 SGW----------SFFGSRTSESNKTDIMVMLQVRKVD 393
>gi|149190975|ref|ZP_01869237.1| hypothetical protein VSAK1_26575 [Vibrio shilonii AK1]
gi|148835218|gb|EDL52193.1| hypothetical protein VSAK1_26575 [Vibrio shilonii AK1]
Length = 479
Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 52/311 (16%), Positives = 91/311 (29%), Gaps = 26/311 (8%)
Query: 125 MTLRRFIADSNIRVEMVSD-TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
L D +I E+ +D VL G S + + +
Sbjct: 180 QFLNIGYQDVDIISEIANDVRNVLGG---DEAAKNAVTASSNMSAITVTTSPDKMQTVEH 236
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEG 242
++ QV L V I E D+ + G + + S G K F G
Sbjct: 237 LIEHYQKELSKQVLLDVRIVEFFSDVGTERGVNWNLVYDSGEGIVKFFVPGTNTLSKQAG 296
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
+ +G E ++ LE+ ++ + T + Q A T Y SS
Sbjct: 297 YGMAFEGTGKWSGSEALIKVLEQQGSVSSETPVTYMVSNNQPARITQQRDVPYLYEVSSN 356
Query: 303 GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------AGDMP 349
+ + GV T V S + LR+ ++ +
Sbjct: 357 SNENTVSTGVTRKTEVEGVDFMVTANVQSD-YVSLRMSGQLQKITKEETKKVENIDLGFL 415
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ + + +L G T V+A + + + LF + E E
Sbjct: 416 TTQKSEITFANKLRYGQTYVIASVKQQTKTAEETK-------NFFSTLFGGTGSKNETIE 468
Query: 410 IFIAATPFLVK 420
+ TP V+
Sbjct: 469 TLVLLTPRKVQ 479
>gi|306813501|ref|ZP_07447691.1| putative phage-related secreted protein [Escherichia coli NC101]
gi|305853246|gb|EFM53686.1| putative phage-related secreted protein [Escherichia coli NC101]
Length = 414
Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/338 (17%), Positives = 111/338 (32%), Gaps = 33/338 (9%)
Query: 95 GQANVILIGHDG----KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G N+ + G + + R R S+I VS + G
Sbjct: 77 GNMNIRIWTKKGVDFIAPYTPKEPVKPRYTWTYTPQYRSVAYLSDILGGYVSGSFNNSGA 136
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG----EDQVTLKVTIAEVR 206
V + + + S Y + + + D+V + + EV+
Sbjct: 137 VISDDSLKGSSGASNYINRTGDILVYYGTKEDIAILKTLVTSLDTMSDEVVVSGYVFEVQ 196
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
G + S + S A F++ + S + + + L+
Sbjct: 197 TSQSDGSGILLAAKILSDKFNISVGAAGLDNFIN----------IRTGSIDAIFNLLKTD 246
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
+ ++ P L + SASF+ G TV+++T SV GV+ + TP+ +
Sbjct: 247 SRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVLFNVTPS-I 305
Query: 324 SPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ L+IQ ++S V + P+ R T V L G I+L GL + +
Sbjct: 306 KSRTMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQKDSKAS 365
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G + F + +T+I + V
Sbjct: 366 SGW----------SFFGSRTSESNKTDIMVMLQVRKVD 393
>gi|327412691|emb|CAX67687.1| putative Type IV pilus lipoprotein (PilN) [Yersinia enterocolitica]
Length = 562
Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/253 (18%), Positives = 84/253 (33%), Gaps = 33/253 (13%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVL 251
QV L V + V + +Q G + S + + G S+
Sbjct: 317 RQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINAADNAFSGGLSILDTA 376
Query: 252 DRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300
+ + ++ AL + + + E I+ F Q Y SS
Sbjct: 377 TGPAAKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGYIQSSSTTATAN 436
Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350
+T + G+ + P + G + L+ +S+ G D P+
Sbjct: 437 AGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPTIQPFFSHDGNTRTDTPA 496
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALF-RNSRFNREE 407
+++R TV + +G T+VL G + D K+G P LF +
Sbjct: 497 FKLRSLTQTVNMRAGQTLVLTGADQLDSVANKQGAFTPG-------NFLFGGGHVGSDTR 549
Query: 408 TEIFIAATPFLVK 420
T + I TP L++
Sbjct: 550 TTLVILITPVLLR 562
>gi|218691155|ref|YP_002399367.1| putative type IV pilus outer membrane secretin lipoprotein
[Escherichia coli ED1a]
gi|218428719|emb|CAR09511.1| putative type IV pilus outer membrane secretin lipoprotein
[Escherichia coli ED1a]
Length = 533
Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 77/265 (29%), Gaps = 22/265 (8%)
Query: 173 RNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
V N + QV L + I +++ +Q G + S
Sbjct: 273 TVTDTPQVLDTVKNFMEERNREMRRQVVLNIEILSIKKTSKEQAGIDWNAVFSDGHLGID 332
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ F + L AL + + + + +
Sbjct: 333 LTSAFTNAADEVVTSGVSIIDGKLTGSKAFLKALSSQGKVSVVTQNSAVTKNLTPVPMQV 392
Query: 290 GGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGR-------IGLRIQT 334
Q Y ++ +V T G + P + + L +
Sbjct: 393 ASQQGYIESVTTDTTANVGSSTSLNAATITTGFNMTLLPFIQPGSHRLQLLFSMSLSDKP 452
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
G + PS ++ + T++L S T++L+G + + L++G+ P
Sbjct: 453 VFEVFESGGSRAQTPSVELKTINQTIDLKSDQTVILSGFQQFSRKSLRQGV----GTPSF 508
Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
L ++T + + TP ++
Sbjct: 509 FGLGGGVDSADDDTILVVLITPHVI 533
>gi|37955689|gb|AAP22528.1| PilN [Pseudomonas aeruginosa]
Length = 569
Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/258 (17%), Positives = 81/258 (31%), Gaps = 25/258 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
++++N N + QV L V + V Q+G ++ S
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
+S + ++ AL + + T+ P++T ++ QSA
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435
Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
Q ST + G + P V+ G I + + G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ PSY ++ D V L SG T+VL+G D + +
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550
Query: 403 FNREETE-IFIAATPFLV 419
+ E I + TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568
>gi|152986390|ref|YP_001349821.1| type IVB pilus formation outer membrane protein [Pseudomonas
aeruginosa PA7]
gi|150961548|gb|ABR83573.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Pseudomonas aeruginosa PA7]
Length = 569
Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/258 (17%), Positives = 81/258 (31%), Gaps = 25/258 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
++++N N + QV L V + V Q+G ++ S
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
+S + ++ AL + + T+ P++T ++ QSA
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435
Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
Q ST + G + P V+ G I + + G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ PSY ++ D V L SG T+VL+G D + +
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550
Query: 403 FNREETE-IFIAATPFLV 419
+ E I + TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568
>gi|126668015|ref|ZP_01738979.1| hypothetical protein MELB17_09748 [Marinobacter sp. ELB17]
gi|126627525|gb|EAZ98158.1| hypothetical protein MELB17_09748 [Marinobacter sp. ELB17]
Length = 498
Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 76/239 (31%), Gaps = 18/239 (7%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV L++ A V + + ++ + + +
Sbjct: 259 RQVHLQIRTASVTVENANDFNLTWNNILNTVNNGDFDVGLNSAAVSTAANPNILNVIRTS 318
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------G 303
L L + T + E ++T +S Q AS + Y + S
Sbjct: 319 TGASLALEMLAQETESTEINEQSVTTLSNQPASLKVLSETGYISGISQQETSGDLNNVIS 378
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVE- 361
VTT G P V+S + L++ E+S + +N + R +T V+
Sbjct: 379 DVEVTTITTGFDATLVPRVVSDSVLQLQVALELSNNLQLINFDSTIVQTPTRNRNTVVQR 438
Query: 362 --LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G T +LA + G + LG + + + + I TP +
Sbjct: 439 AWLRNGETWILAAFNSEKTTNKISGT-GSAGFWGLG---GGTSKSNNQQVLLIMITPHI 493
>gi|148807357|gb|ABR13431.1| putative PilN [Pseudomonas aeruginosa]
Length = 569
Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
++++N N + QV L V + V Q+G ++ S
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
+S + ++ AL + + T+ P++T ++ QSA
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435
Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
Q ST + G + P V+ G I + + G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ PSY ++ D V L SG T+VL+G D + + G
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 550
Query: 403 FNREETE-IFIAATPFLV 419
+ E I + TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568
>gi|315499170|ref|YP_004087974.1| type II and iii secretion system protein [Asticcacaulis excentricus
CB 48]
gi|315417182|gb|ADU13823.1| type II and III secretion system protein [Asticcacaulis excentricus
CB 48]
Length = 543
Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 52/278 (18%), Positives = 92/278 (33%), Gaps = 8/278 (2%)
Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
+ L+ + Q + L DQV++ V I + +G
Sbjct: 211 DAKLVLTRMSELERTGLQDIPQAGGGETPTLPPETPDQVSVDVAIILSQNAQRDSVGVNL 270
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPT 276
+ GG G ++ + L+ R + +A P
Sbjct: 271 LDGLQLQYGRQDQQNHSGGDT---GVTRTITDTITLPQLTYNLNLFNRFGQYYQVVARPM 327
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
LTA G+ + F G K + + D G + TP ++ R LRI+
Sbjct: 328 LTAYRGEPSDFFVGRS--TKVAVKGVNFSQLENIDIGTQVKVTPVEITSDRTRLRIEVTR 385
Query: 337 SEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
S + + TTVE+ G T++L+GL + PL+ P++
Sbjct: 386 SFLSGEPAGNFNEALNTWRQTVSTTVEVRFGTTLILSGLSESVRDSSVTKTPLIGDAPLI 445
Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
G+ F N+ + + TP + + + SR D
Sbjct: 446 GSGFNRRVTNQRRDAVLVLVTPSPARVMESQGWSRQAD 483
>gi|67639316|ref|ZP_00438187.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia mallei GB8 horse 4]
gi|238519853|gb|EEP83319.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia mallei GB8 horse 4]
Length = 441
Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S ++V + QV L VT+ V G ++
Sbjct: 161 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 220
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
+ F ++ D S + F ++ AL + +R ++
Sbjct: 221 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 280
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
T ++ Q Q Y S+T +V + G + P VL G +
Sbjct: 281 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 340
Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
L+ T +S E + P +R V + SG T+V++G +
Sbjct: 341 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 400
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ G+ P + AL R I I TP
Sbjct: 401 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 434
>gi|167743301|ref|ZP_02416075.1| hypothetical protein Bpse14_34822 [Burkholderia pseudomallei 14]
Length = 403
Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ + S ++V + QV L VT+ V G ++
Sbjct: 123 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 182
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
+ F ++ D S + F ++ AL + +R ++
Sbjct: 183 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 242
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
T ++ Q Q Y S+T +V + G + P VL G +
Sbjct: 243 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 302
Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
L+ T +S E + P +R V + SG T+V++G +
Sbjct: 303 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 362
Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
+ G+ P + AL R I I TP
Sbjct: 363 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 396
>gi|300310142|ref|YP_003774234.1| type IVB pilus formation outer membrane protein [Herbaspirillum
seropedicae SmR1]
gi|300072927|gb|ADJ62326.1| type IVB pilus formation outer membrane protein [Herbaspirillum
seropedicae SmR1]
Length = 602
Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 75/252 (29%), Gaps = 35/252 (13%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----ADFGGKFVSEGGDFSVK 248
Q+ + VT+ V Q G + S + A VS
Sbjct: 351 SRQIAINVTVLSVTLSDDDQYGINWNAVYRSLNSTFGIANAYEGALSTGLVSFTAGIPSS 410
Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
G + V+ AL + +R ++ ++ Q Q Y S+ V
Sbjct: 411 GTSGFSGSQAVIQALSQQGKVRRQTTASVVTLNNQPVPVQVARQTTYLQSLQSSLVAQVG 470
Query: 309 T--------HDYGVVLHFTPTVLSPGRIGLRIQTEVS-------------EPVIGVNAGD 347
T G + P +L+ G + L+ T++S +
Sbjct: 471 TTTSLTPGVVTAGFNMSILPHMLTNGTVMLQFSTDISTLRRIRQITASTDSSGRATALIE 530
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP---ILGALFRNSRFN 404
P R V + S T++++G + D + G+ P +LG
Sbjct: 531 SPELDTRNFLQRVAMKSNETLIISGFEQTDENLGRSGV---GD-PKNLLLG---GGVSAA 583
Query: 405 REETEIFIAATP 416
+ I + TP
Sbjct: 584 TNKEVIVVLITP 595
>gi|87306498|ref|ZP_01088645.1| general secretory pathway protein D-like [Blastopirellula marina DSM
3645]
gi|87290677|gb|EAQ82564.1| general secretory pathway protein D-like [Blastopirellula marina DSM
3645]
Length = 1313
Score = 94.8 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/308 (14%), Positives = 89/308 (28%), Gaps = 83/308 (26%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
QVT++V + + ++IG + + G G
Sbjct: 990 QVTIEVRFITLNDNFFERIGIDFDLDIKDNTSGIGTNRGSDGSPSITIGLDQTGNPTSDL 1049
Query: 255 SFET--------------------------------------VLHALERATAIRTLAEPT 276
V+ A + + P
Sbjct: 1050 DLSFAQNSFGNTVPAIGGLGAAAGSIGGSFGFAMLSDIEAFFVMQAAQSDLRSNVMQAPK 1109
Query: 277 LTAISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGR-I 328
+T +GQ+A T Q + T ++ + + G L V + R +
Sbjct: 1110 VTLFNGQTAFVTDSTQRPFVTSVTPVVGDFAAAQQPVIVVLNEGTSLTVQAVVSADRRFV 1169
Query: 329 GLRIQTEVSEP-------------------------------------VIGVNAGDMPSY 351
L + S+ + P +
Sbjct: 1170 RLTLVPMFSQIGEVDTFTFEGTSSSRADSTVEDPDAADGGTTTDNEEEQMTGTTVQQPEF 1229
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
+ TTV +P GGT++L G+ + ++ + G+P++SK+P + LFRN R +
Sbjct: 1230 SIITVTTTVSVPDGGTVLLGGIKRLSEERREAGVPIVSKLPYINRLFRNVGIGRSTQSLM 1289
Query: 412 IAATPFLV 419
+ TP ++
Sbjct: 1290 MMVTPRII 1297
>gi|107099850|ref|ZP_01363768.1| hypothetical protein PaerPA_01000870 [Pseudomonas aeruginosa PACS2]
Length = 524
Score = 94.8 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
++++N N + QV L V + V Q+G ++ S
Sbjct: 271 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 330
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
+S + ++ AL + + T+ P++T ++ QSA
Sbjct: 331 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 390
Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
Q ST + G + P V+ G I + + G
Sbjct: 391 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 450
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ PSY ++ D V L SG T+VL+G D + + G
Sbjct: 451 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 505
Query: 403 FNREETE-IFIAATPFLV 419
+ E I + TP ++
Sbjct: 506 TRNTKREVIVVLITPVVL 523
>gi|123443695|ref|YP_001007666.1| putative type IV pilus operon lipoprotein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090656|emb|CAL13527.1| putative type IV pilus operon lipoprotein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 562
Score = 94.8 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/253 (18%), Positives = 84/253 (33%), Gaps = 33/253 (13%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVL 251
QV L V + V + +Q G + S + + G S+
Sbjct: 317 RQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINAADNAFSGGLSILDTA 376
Query: 252 DRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300
+ + ++ AL + + + E I+ F Q Y SS
Sbjct: 377 TGPAAKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGYIQSSSTTATAN 436
Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350
+T + G+ + P + G + L+ +S+ G D P+
Sbjct: 437 AGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPTIQPFFSRDGNTRTDTPA 496
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALF-RNSRFNREE 407
+++R TV + +G T+VL G + D K+G P LF +
Sbjct: 497 FKLRSLTQTVNMRAGQTLVLTGADQLDSVANKQGAFTPG-------NFLFGGGHVGSDTR 549
Query: 408 TEIFIAATPFLVK 420
T + I TP L++
Sbjct: 550 TTLVILITPVLLR 562
>gi|254238773|ref|ZP_04932096.1| type IV pilus protein PilN [Pseudomonas aeruginosa C3719]
gi|126170704|gb|EAZ56215.1| type IV pilus protein PilN [Pseudomonas aeruginosa C3719]
Length = 569
Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/258 (17%), Positives = 81/258 (31%), Gaps = 25/258 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
++++N N + QV L V + V Q+G ++ S
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
+S + ++ AL + + T+ P++T ++ QSA
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435
Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
Q ST + G + P V+ G I + + G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ PSY ++ D V L SG T+VL+G D + +
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550
Query: 403 FNREETE-IFIAATPFLV 419
+ E I + TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568
>gi|167820480|ref|ZP_02452160.1| hypothetical protein Bpse9_35477 [Burkholderia pseudomallei 91]
Length = 411
Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V G ++ + F ++ D S +
Sbjct: 163 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 222
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
F ++ AL + +R ++T ++ Q Q Y S+T +V +
Sbjct: 223 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 282
Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
G + P VL G + L+ T +S E + P
Sbjct: 283 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 342
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R V + SG T+V++G + + G+ P + AL R I
Sbjct: 343 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 398
Query: 411 FIAATP 416
I TP
Sbjct: 399 VILITP 404
>gi|87300799|ref|ZP_01083641.1| possible general (type II) secretion pathway protein D precursor
[Synechococcus sp. WH 5701]
gi|87284670|gb|EAQ76622.1| possible general (type II) secretion pathway protein D precursor
[Synechococcus sp. WH 5701]
Length = 911
Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 10/163 (6%)
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPT 321
L AT RT A + + Q + T ++ + T G+
Sbjct: 729 LSPATIGRTRANESFVTVGRQ-----VVSAYDVTTTANVGVSCEPTFSTAGLTFGARVSK 783
Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADT-TVELPSGGTIVLAGLLKDD 377
+ G + + +S V + R+ DT +V + G T++L G++ DD
Sbjct: 784 IDDNGFVTFTLSPAISGVVDRQPVPGCGFIDILRLRRLDTGSVRVRDGQTLILTGVISDD 843
Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
Q+ P+L +P+LG FR + +R + E+ I TP ++
Sbjct: 844 DFQVVSKWPILGDLPLLGQFFRKTSGSRNKNELVILVTPRIID 886
>gi|167898912|ref|ZP_02486313.1| hypothetical protein Bpse7_34586 [Burkholderia pseudomallei 7894]
Length = 417
Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V G ++ + F ++ D S +
Sbjct: 169 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 228
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
F ++ AL + +R ++T ++ Q Q Y S+T +V +
Sbjct: 229 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 288
Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
G + P VL G + L+ T +S E + P
Sbjct: 289 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 348
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R V + SG T+V++G + + G+ P + AL R I
Sbjct: 349 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 404
Query: 411 FIAATP 416
I TP
Sbjct: 405 VILITP 410
>gi|49658861|emb|CAF28487.1| putative lipoprotein [Yersinia pseudotuberculosis]
Length = 530
Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/252 (19%), Positives = 83/252 (32%), Gaps = 31/252 (12%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVL 251
QV L V + V + +Q G + S + + G S+
Sbjct: 285 RQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINAANNTLSGGLSILDTA 344
Query: 252 DR-----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300
E ++ AL + + + E I+ F Q Y SS
Sbjct: 345 TGPAEKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGYIQSSSTTVTAN 404
Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350
+T + G+ + P + G + L+ +S+ I G D P+
Sbjct: 405 AGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPIIQPFFSRDGNTRNDTPA 464
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALFRNSRFNREET 408
+++R TV L +G T+VL G + D K+G P S G T
Sbjct: 465 FKLRSLTQTVNLRAGQTLVLTGADQLDTVANKQGAFTP--SNFWWGG----GHNGLETRT 518
Query: 409 EIFIAATPFLVK 420
+ I TP L++
Sbjct: 519 TLVILITPVLLR 530
>gi|167907237|ref|ZP_02494442.1| hypothetical protein BpseN_33715 [Burkholderia pseudomallei NCTC
13177]
Length = 419
Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V G ++ + F ++ D S +
Sbjct: 171 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 230
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
F ++ AL + +R ++T ++ Q Q Y S+T +V +
Sbjct: 231 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 290
Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
G + P VL G + L+ T +S E + P
Sbjct: 291 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 350
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R V + SG T+V++G + + G+ P + AL R I
Sbjct: 351 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 406
Query: 411 FIAATP 416
I TP
Sbjct: 407 VILITP 412
>gi|32481696|gb|AAP84210.1| PilN2 [Pseudomonas aeruginosa PA14]
Length = 540
Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
++++N N + QV L V + V Q+G ++ S
Sbjct: 287 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 346
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
+S + ++ AL + + T+ P++T ++ QSA
Sbjct: 347 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 406
Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
Q ST + G + P V+ G I + + G
Sbjct: 407 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 466
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ PSY ++ D V L SG T+VL+G D + + G
Sbjct: 467 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 521
Query: 403 FNREETE-IFIAATPFLV 419
+ E I + TP ++
Sbjct: 522 TRNTKREVIVVLITPVVL 539
>gi|167923443|ref|ZP_02510534.1| hypothetical protein BpseBC_33112 [Burkholderia pseudomallei
BCC215]
Length = 413
Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V G ++ + F ++ D S +
Sbjct: 165 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 224
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
F ++ AL + +R ++T ++ Q Q Y S+T +V +
Sbjct: 225 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 284
Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
G + P VL G + L+ T +S E + P
Sbjct: 285 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 344
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R V + SG T+V++G + + G+ P + AL R I
Sbjct: 345 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 400
Query: 411 FIAATP 416
I TP
Sbjct: 401 VILITP 406
>gi|167724338|ref|ZP_02407574.1| hypothetical protein BpseD_35290 [Burkholderia pseudomallei DM98]
gi|167850311|ref|ZP_02475819.1| hypothetical protein BpseB_34040 [Burkholderia pseudomallei B7210]
Length = 414
Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V G ++ + F ++ D S +
Sbjct: 166 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 225
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
F ++ AL + +R ++T ++ Q Q Y S+T +V +
Sbjct: 226 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 285
Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
G + P VL G + L+ T +S E + P
Sbjct: 286 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 345
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R V + SG T+V++G + + G+ P + AL R I
Sbjct: 346 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 401
Query: 411 FIAATP 416
I TP
Sbjct: 402 VILITP 407
>gi|167915601|ref|ZP_02502692.1| hypothetical protein Bpse112_34291 [Burkholderia pseudomallei 112]
Length = 433
Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V G ++ + F ++ D S +
Sbjct: 185 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 244
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
F ++ AL + +R ++T ++ Q Q Y S+T +V +
Sbjct: 245 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 304
Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
G + P VL G + L+ T +S E + P
Sbjct: 305 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 364
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R V + SG T+V++G + + G+ P + AL R I
Sbjct: 365 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 420
Query: 411 FIAATP 416
I TP
Sbjct: 421 VILITP 426
>gi|167828852|ref|ZP_02460323.1| hypothetical protein Bpseu9_34514 [Burkholderia pseudomallei 9]
Length = 415
Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V G ++ + F ++ D S +
Sbjct: 167 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 226
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
F ++ AL + +R ++T ++ Q Q Y S+T +V +
Sbjct: 227 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 286
Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
G + P VL G + L+ T +S E + P
Sbjct: 287 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 346
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R V + SG T+V++G + + G+ P + AL R I
Sbjct: 347 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 402
Query: 411 FIAATP 416
I TP
Sbjct: 403 VILITP 408
>gi|296391291|ref|ZP_06880766.1| Type IV B pilus protein [Pseudomonas aeruginosa PAb1]
Length = 528
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
++++N N + QV L V + V Q+G ++ S
Sbjct: 275 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 334
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
+S + ++ AL + + T+ P++T ++ QSA
Sbjct: 335 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 394
Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
Q ST + G + P V+ G I + + G
Sbjct: 395 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 454
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ PSY ++ D V L SG T+VL+G D + + G
Sbjct: 455 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 509
Query: 403 FNREETE-IFIAATPFLV 419
+ E I + TP ++
Sbjct: 510 TRNTKREVIVVLITPVVL 527
>gi|213019427|ref|ZP_03335233.1| type II secretion system protein, putative [Wolbachia endosymbiont
of Culex quinquefasciatus JHB]
gi|212994849|gb|EEB55491.1| type II secretion system protein, putative [Wolbachia endosymbiont
of Culex quinquefasciatus JHB]
Length = 448
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/266 (15%), Positives = 85/266 (31%), Gaps = 52/266 (19%)
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ ++ +N + QV ++ I EV D G + + + + +
Sbjct: 194 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGINLNDLHNETKSITNQDS------ 247
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
S+ ++ E ++ L++ ++ P + AI+ Q A + H+Y T
Sbjct: 248 -------SITSLVMNSDLENLVKTLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 300
Query: 299 SSSTGA--------TSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345
T + + GVVL P++ I + I +S
Sbjct: 301 DIQKDTGNSNHALITKMNSTPIGVVLIIHPSINIDTNEIFMDIHPTLSRINNYTKDPNIE 360
Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
D+P R+ +T+++ SG +V+ GL++
Sbjct: 361 YVAQQNKMKLNSDIPIIETREMHSTLKIKSGEVMVIGGLIEHRKDNQ------------- 407
Query: 395 GALFRNSRFNREET-EIFIAATPFLV 419
L +T E I +V
Sbjct: 408 -NLLHQKSKKLAKTVETVIFLKATIV 432
>gi|167615506|ref|ZP_02384141.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
thailandensis Bt4]
Length = 417
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 26/246 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V G S+ + + F +++ D S +
Sbjct: 169 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTKPADLSATVLSP 228
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
F ++ AL + +R ++T ++ Q Q Y S+T +V +
Sbjct: 229 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 288
Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----------GVNAGDMPS 350
G + P VL G + L+ T +S + P
Sbjct: 289 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSSTGGRSAARIQTPD 348
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R V + SG T+V++G + + G+ P + AL R I
Sbjct: 349 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 404
Query: 411 FIAATP 416
I TP
Sbjct: 405 VILITP 410
>gi|213419653|ref|ZP_03352719.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 173
Score = 94.4 bits (233), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 6/132 (4%)
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRK 355
++ YG ++ P + G+I + + E + +P
Sbjct: 6 GERNVALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTL 65
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T +P G ++++ G +D + IP+L K+P++G+LFR S N+
Sbjct: 66 ISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRVFMIE 125
Query: 416 PF-LVKPVAMRD 426
P +V P+
Sbjct: 126 PKEIVDPLTPDA 137
>gi|167577356|ref|ZP_02370230.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
thailandensis TXDOH]
Length = 425
Score = 94.4 bits (233), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 26/246 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V G S+ + + F +++ D S +
Sbjct: 177 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTKPADLSATVLSP 236
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
F ++ AL + +R ++T ++ Q Q Y S+T +V +
Sbjct: 237 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 296
Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----------GVNAGDMPS 350
G + P VL G + L+ T +S + P
Sbjct: 297 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSSTGGRSAARIQTPD 356
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R V + SG T+V++G + + G+ P + AL R I
Sbjct: 357 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 412
Query: 411 FIAATP 416
I TP
Sbjct: 413 VILITP 418
>gi|153947286|ref|YP_001402688.1| type IVB pilus formation outer membrane protein [Yersinia
pseudotuberculosis IP 31758]
gi|152958781|gb|ABS46242.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Yersinia pseudotuberculosis IP 31758]
Length = 530
Score = 94.4 bits (233), Expect = 4e-17, Method: Composition-based stats.
Identities = 48/252 (19%), Positives = 82/252 (32%), Gaps = 31/252 (12%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV L V + V + +Q G + S + + + +
Sbjct: 285 RQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINVANNTLSGGLSILDTA 344
Query: 254 F-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300
E ++ AL + + + E I+ F Q Y SS
Sbjct: 345 TGPAEKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGYIQSSSTTVTAN 404
Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350
+T + G+ + P + G + L+ +S+ I G D P+
Sbjct: 405 AGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPIIQPFFSRDGNTRNDTPA 464
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALFRNSRFNREET 408
+++R TV L +G T+VL G + D K+G P S G T
Sbjct: 465 FKLRSLTQTVNLRAGQTLVLTGADQLDTVANKQGAFTP--SNFWWGG----GHNGLETRT 518
Query: 409 EIFIAATPFLVK 420
+ I TP L++
Sbjct: 519 TLVILITPVLLR 530
>gi|37525036|ref|NP_928380.1| hypothetical protein plu1051 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784462|emb|CAE13346.1| pilN [Photorhabdus luminescens subsp. laumondii TTO1]
Length = 567
Score = 94.4 bits (233), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/250 (18%), Positives = 85/250 (34%), Gaps = 27/250 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGGKFVSEGGDFSVKGV 250
QV L V + V +Q+G + + + G + S + G + G ++
Sbjct: 322 RQVLLNVQVLSVSTSRKEQMGLDWGLVYNSLHNLGATLSGSFSGMGSGTTSAGVSILESA 381
Query: 251 LDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ ++ AL + + + Q +Y SS+T AT
Sbjct: 382 TGKAAKLSGSSLLIKALSEQGNVSVVTSQGSATTNLTPIPIQMADQTVYVAQSSTTTATD 441
Query: 307 V--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350
V G + P + G + L++ +S+P G + +MP
Sbjct: 442 VGATTALTPGMITTGFNMTLLPLIQRNGDVQLQVAFNLSDPPTIRSFTSKEGNSYIEMPY 501
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
R+R V L +G +VL G + D + K G +LG + + +
Sbjct: 502 TRLRSLSQKVNLRAGQALVLTGFEQADTRVTKTGTFTPGNF-LLG---GGQSGENQRSTL 557
Query: 411 FIAATPFLVK 420
I TP L+
Sbjct: 558 VILITPVLLD 567
>gi|116052606|ref|YP_792921.1| Type IV B pilus protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|115587827|gb|ABJ13842.1| Type IV B pilus protein [Pseudomonas aeruginosa UCBPP-PA14]
Length = 545
Score = 94.0 bits (232), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
++++N N + QV L V + V Q+G ++ S
Sbjct: 292 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 351
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
+S + ++ AL + + T+ P++T ++ QSA
Sbjct: 352 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 411
Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
Q ST + G + P V+ G I + + G
Sbjct: 412 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 471
Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
+ PSY ++ D V L SG T+VL+G D + + G
Sbjct: 472 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 526
Query: 403 FNREETE-IFIAATPFLV 419
+ E I + TP ++
Sbjct: 527 TRNTKREVIVVLITPVVL 544
>gi|171317904|ref|ZP_02907080.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
gi|171096911|gb|EDT41783.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
Length = 460
Score = 94.0 bits (232), Expect = 5e-17, Method: Composition-based stats.
Identities = 59/371 (15%), Positives = 113/371 (30%), Gaps = 40/371 (10%)
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
DV+DV+V V + + K G ++ + + R +
Sbjct: 106 SRDVRDVMVDFLDSLGFQVVTKNGVDYVMKKPGA----VLAKADRDVYVYKPR-YRKASE 160
Query: 123 LEMTLRRFIAD----SNIRVEMVSDTVVLHGMVRTIQDSQR-----AVELSETFLSQSGR 173
L + I + V V+ V V + ++ ++
Sbjct: 161 LRELVEPLIGARSMLPPVSVGPVAGDAVGAVQVPGAPAAMPNSGPFVQPVAGGVQARGSD 220
Query: 174 NQYANSSSKKVMNLLNIA----GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
S + + + +V ++ EV S+ +
Sbjct: 221 LVIVGSRDEVALLRKVVPELDTAPGEVVVRGWAYEVTNTDSAN---------SAWSIAAK 271
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ S + + AL + + ++ P + SG+
Sbjct: 272 VLGGQLRISSGDTSSDSSAVRFTGPGIDAAISALNADSRFKVISSPHVRIASGEKVRLNV 331
Query: 290 GGQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-V 343
G Q + SS T S+T D G++ PTV+ I LR+ E+S+ V
Sbjct: 332 GQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMRD-AIELRVHEEISDFVATKT 390
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
P+ R+ T L G +VL GL++D + G L P +
Sbjct: 391 GVDTSPTKNTRQLQTVTRLKDGEVVVLGGLIQDRNATARSGYAWL---P---SFLDGRSS 444
Query: 404 NREETEIFIAA 414
+++ TE+ +
Sbjct: 445 SKQRTEVLLVL 455
>gi|171322813|ref|ZP_02911537.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia ambifaria MEX-5]
gi|171091832|gb|EDT37330.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia ambifaria MEX-5]
Length = 346
Score = 94.0 bits (232), Expect = 5e-17, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 78/244 (31%), Gaps = 24/244 (9%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGV 250
QV L VT+ V G S+ + + F ++ G +
Sbjct: 100 SRQVMLNVTVLSVSLKAGDAYGIDWSLVYKTVSAQFGISNPFTPAALTPGDLSATVLSPT 159
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-- 308
+ ++ AL + +R ++T ++ Q Q Y S+T +V
Sbjct: 160 SRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGSS 219
Query: 309 ------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSYR 352
T G + P VL G + L+ T +S G P
Sbjct: 220 TALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKDVSSSTGSGATRIQTPDVD 279
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
+R V + SG T+V++G + + GI P + AL R I I
Sbjct: 280 MRNFLQRVAMKSGETLVISGYEGTNDSLDERGI----GTPKMIALGGGYEAQRSREVIVI 335
Query: 413 AATP 416
TP
Sbjct: 336 LITP 339
>gi|311279575|ref|YP_003941806.1| type II and III secretion system protein [Enterobacter cloacae
SCF1]
gi|308748770|gb|ADO48522.1| type II and III secretion system protein [Enterobacter cloacae
SCF1]
Length = 406
Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 19/225 (8%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
D+V + + EV+ G + + G + +
Sbjct: 189 DEVFIAGYVFEVQTSERNGSGLALAAK--------LLGGKIEIGMGNMSGGYENFIRIGG 240
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---SSSTGATSVTTH 310
S + + + ++ P L SG SA+F+ G + + + ++ SV
Sbjct: 241 SSLDAMYELFRTDSRFNVVSSPRLRVKSGYSATFSVGQEVPVLSGIDRNQNSTYQSVDYR 300
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIV 369
GV+L TP+ + L+I ++S + + P+ R+ T V + SG +V
Sbjct: 301 SAGVILDVTPS-VRNSVTDLKISQQLSNFIKTDTGVNNTPTLIKREVSTFVSVKSGDIVV 359
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
L GL + + G L K +LG + + +T+I I
Sbjct: 360 LGGLAETKDSDARTGFSFLPK--VLG----SRSDEKSKTDILIVL 398
>gi|83720458|ref|YP_443762.1| phage-related secreted protein [Burkholderia thailandensis E264]
gi|83654283|gb|ABC38346.1| probable phage-related secreted protein YPO2280 [Burkholderia
thailandensis E264]
Length = 460
Score = 93.7 bits (231), Expect = 7e-17, Method: Composition-based stats.
Identities = 59/370 (15%), Positives = 116/370 (31%), Gaps = 38/370 (10%)
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL--DILIERDI 120
DV+DV+V V + + + G ++ + + D+
Sbjct: 106 SRDVRDVMVDFLDSLGFQVVTKNGVDYVMRKPGA----VLAKADRDVYVYKPRYRKASDL 161
Query: 121 AHLEMTL---RRFIADSNI--RVEMVSDTVVLHGM-VRTIQDSQRAVELSETFLSQSGRN 174
L L + ++ + V + G ++ A ++ ++ G
Sbjct: 162 RELVEPLIGSHSMLPPVSVGPVAGESAGAVQVPGAPAAVPTNAPVAQPVASGVQARGGEL 221
Query: 175 QYANSSSKKVMNLLNIA----GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
S + M + +V ++ EV T S+ +
Sbjct: 222 VIVGSRDEVAMLRKLVPELDTAPGEVVVRGWAYEVTNTDS---------TNSAWSIAAKV 272
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
+ + + AL + + ++ P + SG+ G
Sbjct: 273 LGGQLRISSGDTSSDKSAVRFTGPGIDAAISALNADSRFKVISSPHVRIASGERVRLNVG 332
Query: 291 GQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VN 344
Q + SS T S+T D G++ PTV+ I LR+ E+S+ V
Sbjct: 333 QQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMRD-AIELRVHEEISDFVPTKTG 391
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
P+ R+ T L G +VL GL++D + G L P + +
Sbjct: 392 VDTSPTKNTRQLQTVTRLTDGEVVVLGGLIQDRNSTARSGYAWL---P---SFLDGRSSS 445
Query: 405 REETEIFIAA 414
++ TE+ +
Sbjct: 446 KQRTEVLLVL 455
>gi|257465733|ref|ZP_05630104.1| putative phage-related secreted protein [Actinobacillus minor 202]
gi|257451393|gb|EEV25436.1| putative phage-related secreted protein [Actinobacillus minor 202]
Length = 375
Score = 93.3 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 51/294 (17%), Positives = 95/294 (32%), Gaps = 45/294 (15%)
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
L F+A V D +V +G I + ++ +
Sbjct: 118 EYLAGFLAGEG-EVFANGDKLVYYGTSEDIARIKSVLKAVDM------------------ 158
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
+V + + EV+ D+ K+ GS + G +
Sbjct: 159 -------KSREVIVTGYVFEVQ-DVEKE--------GSGINLLAKLLSGKLGISIGVKQS 202
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSS 301
+ ++ + + + + ++ P L SG +F+ G T
Sbjct: 203 YENFITVNAGNLDAIFELFRTDGRFQVVSSPILRVKSGSKGNFSVGSDVPILSNVTYQDG 262
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTV 360
++ GV+ PT + I L+IQ ++S V P+ R T V
Sbjct: 263 KPIQAIEYRSSGVIFDIQPT-IKNQSIDLKIQQQLSNFVKTDTGVNQSPTLIKRDLVTDV 321
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
+ SG IVL GL ++ + + + G L K G L + +T+I +
Sbjct: 322 SVKSGDVIVLGGLAENKLTEGETGFSFLPK----GWL-TGKSKSSTKTDIIVLL 370
>gi|225874164|ref|YP_002755623.1| hypothetical protein ACP_2600 [Acidobacterium capsulatum ATCC
51196]
gi|225791968|gb|ACO32058.1| hypothetical protein ACP_2600 [Acidobacterium capsulatum ATCC
51196]
Length = 612
Score = 93.3 bits (230), Expect = 8e-17, Method: Composition-based stats.
Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 14/228 (6%)
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
+ E+ L + G +I G DF FV GG + G + +
Sbjct: 376 VQEIISSGLAKAGDWETIIGILLAAGDISGTDFNNPFVIFGGGITETGAEWNTT---AAN 432
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTGATSVTTHDY 312
L ++ + +L + L+ + A+F G ++ T S+ + +
Sbjct: 433 MLLTSSNVISLDQVQLSVRDQKEATFLDGERYPIMTGKLSNLGNLGESTGTSPQFQYVNL 492
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
G+ L TP++ + + L ++ ++S G D+P R+ V + +G + ++
Sbjct: 493 GLTLKVTPSIQANKNVTLHMKLQLSGLA-GTTLDDIPVLTNRQYSGEVSIHAGYSALIVS 551
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ G+P LS+IP L + N + + E+ I TP +++
Sbjct: 552 SMSKQNNLDLTGMPGLSEIPDLHDM-TNRDTSSSDQELVILVTPHIIR 598
>gi|161617498|ref|YP_001591463.1| hypothetical protein SPAB_05357 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161366862|gb|ABX70630.1| hypothetical protein SPAB_05357 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 557
Score = 93.3 bits (230), Expect = 9e-17, Method: Composition-based stats.
Identities = 47/251 (18%), Positives = 82/251 (32%), Gaps = 27/251 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L + I V + +Q+G + S + + G + +
Sbjct: 311 SRQVQLNIQIVSVNQTRNEQLGLDWGLVYKSLHNFGATLTGSMANASTSAGSAGISILDT 370
Query: 253 RFSFET-------VLHALERATAIRTLAEPTLTAISGQS-ASFTSGGQHLYKTVSSS--- 301
++ AL + T + A S Q + + SS+
Sbjct: 371 ATGNAAKFSGSSLLIKALSEQGNVSMALNQTDPTANLTPVAYQLSNQQGVLTSSSSTATA 430
Query: 302 ----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMP 349
T + +VTT G+ + P + G + L+ + P G D+P
Sbjct: 431 NVGVTSSQTVTTITTGLFMTMLPFIQENGDVQLQFAFSYTSPPQIEKFISRDGNTRNDIP 490
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ + V L SG T+VL G + ++ K+G ILG R
Sbjct: 491 NTSTQGLARKVNLRSGQTLVLTGSEQQNLSANKQGT-FTPDNFILG---GGQNGTRGRNT 546
Query: 410 IFIAATPFLVK 420
+ I TP L++
Sbjct: 547 LVIMITPVLLR 557
>gi|327538217|gb|EGF24896.1| protein containing Type II and III secretion system domain
[Rhodopirellula baltica WH47]
Length = 109
Score = 92.9 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
+ +V ++ P R TTV + G TIV+ GL++ + IP LS+
Sbjct: 9 EVSEDVRNATPALSINQYPIINRRSVSTTVSVKDGKTIVIGGLVQRETVDRVNRIPGLSR 68
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPV 422
+P +G LF+ ++ + E+ I +P +V+
Sbjct: 69 LPGVGYLFQTTQRQTRDAEVVIFISPRIVRST 100
>gi|222872747|gb|EEF09878.1| predicted protein [Populus trichocarpa]
Length = 414
Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/321 (13%), Positives = 103/321 (32%), Gaps = 59/321 (18%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
+ S+ + P + A I + + + +++ ++ + + + V++ D
Sbjct: 135 AAGSIMRTPVTLQFRDANIRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNAAIED 191
Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
V V + T++++ + + + L D ++
Sbjct: 192 AVDLILLQSQLDKKVLNANTLFIYPATPAK-----QQEYQELKVRTFQLSNVDSKQVQSL 246
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L+ + + V+ ++TV + G TI+ +++ ++ L +
Sbjct: 247 LKSLLKIKEVVVDERANTVTIRGTPDTIRVAEQM--IAAQDLPEPE-------------- 290
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
V L+V + EV R+ L +G + + + P+ + + + S
Sbjct: 291 ---------VMLEVQVLEVSRERLTDLGIAWPNSFTMATPASATTWGVLHHLTANELEVS 341
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
F T LA P + + + A G + + SS+
Sbjct: 342 PLSATANFKL--------TDTDANLLASPRIRTRNKEKARILIGDKVPVISSSSTPSTSG 393
Query: 304 ---ATSVTTHDYGVVLHFTPT 321
++ D G+ L P
Sbjct: 394 PSFTQTIQYLDVGIKLEVEPQ 414
>gi|38201735|ref|NP_938102.1| PilN [Serratia entomophila]
gi|38176558|gb|AAR13124.1| PilN [Serratia entomophila]
Length = 544
Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 74/241 (30%), Gaps = 19/241 (7%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV L V + V + Q G + +S S F G
Sbjct: 307 RQVVLNVQVYSVEKRTQDQYGIDWNAVFNSGSIGLSLTNAFSGAASDALNGGVSILDGKG 366
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------ 307
+ + AL + + E + + + Q Y + ++ +V
Sbjct: 367 AGTKAFIKALSEQANVSVMTEASSMTTNLSAVPIQVALQQDYASSVTTENTANVGSSSSI 426
Query: 308 --TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
+T G + P ++ I + + + ++ R++
Sbjct: 427 TKSTITTGFNMTVLPFLMPKSPKMQLQFAINMSDDPTMRTFTSEKTSVELMKTRLKTFTQ 486
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V + SG T+VL+G + +G+ G L ++ +T + I TP +
Sbjct: 487 RVIMQSGQTLVLSGYQSLNNTANHQGV---GSFRFFG-LGGGAKGENNKTMLVILITPVI 542
Query: 419 V 419
+
Sbjct: 543 L 543
>gi|327412973|emb|CAX67991.1| PilN (lipoprotein) [Salmonella enterica subsp. VII]
Length = 560
Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 26/247 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
QV L V + V +Q+G +I S+G S + + S
Sbjct: 313 RQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDIANATSASVSILDTAT 372
Query: 251 LDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
+ F ++ AL + + + Q +Y SS+T T V
Sbjct: 373 GNAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVAQSSTTTTTDV 432
Query: 308 T--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSY 351
G + P + G + L++ +S+P G + +MP
Sbjct: 433 GATTSLTPGMMTTGFNMTLLPLIQDDGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYT 492
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
++R L +G +VL G + + + K G +LG + + +
Sbjct: 493 KLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLV 548
Query: 412 IAATPFL 418
I TP L
Sbjct: 549 IIITPEL 555
>gi|330862295|emb|CBX72456.1| hypothetical protein YEW_HH31880 [Yersinia enterocolitica W22703]
Length = 158
Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 15/159 (9%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M+ + + + +FL + V + + + + ++
Sbjct: 1 MKVARTRYLNQIVLFLVCMIIACF---------------IAVNRANAEPVYLSTGQSYMI 45
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ ++ V VS AD + ++ ++ K G A IL + + IL++ I
Sbjct: 46 KTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDNTI 105
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
+R +S+I + + D+ +L G V T + ++
Sbjct: 106 TAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKKQ 144
>gi|238026031|ref|YP_002910262.1| type II secretory pathway, component PulD [Burkholderia glumae
BGR1]
gi|237875225|gb|ACR27558.1| Type II secretory pathway, component PulD [Burkholderia glumae
BGR1]
Length = 449
Score = 92.5 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 66/433 (15%), Positives = 125/433 (28%), Gaps = 54/433 (12%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVE-------------IGKG 47
MR L + + + +P A +P + + + IG
Sbjct: 1 MRRLAVVLWFFAGVSCAAGSPVPASMPGLPPLPSVAGLSTGAGQAPLPAPPLVPLKIGDA 60
Query: 48 KKISIG-LNKVIILQV---PVDVQDVLVSDPTKADVVVHSPR------------TMYLFG 91
K + + +N ++ + + ++S AD + S R +L
Sbjct: 61 KSVDLRFVNVAQVIDLVYADMLQSQYVISPDVLADTRLVSFRFDRTKGDIRDVLGDFLSS 120
Query: 92 KNVGQANV----ILI-----GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
G + + A L + + +
Sbjct: 121 LGFGVTARNGVDYVFKRKDDDQKEADKQVFVYSPKYRTADYLSRLVQPLFSGQFTMNRAV 180
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-QVTLKVT 201
V + A + + A + L + + +V ++
Sbjct: 181 PAAVGS-RAKADAPPTSAAAMVDQSSDTMVFLSSAKEIALLKSVLPQVDTKTGEVAIRAW 239
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
+ EV + + GFQ + S G + G S G + +
Sbjct: 240 VYEVSTENDRTTGFQLAA--SILGGKLGVSLGVGTVDESANALRLHAGF-----LDAAIA 292
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVL 316
AL+ + + P L SG+ G SS+ SVT D GV+
Sbjct: 293 ALDSDSRFHVITSPNLRVESGKHGRLNVGQSVPVIDSVTYPNSSAAPLQSVTYQDAGVIF 352
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
PT + I + E+S+ + P+ RK +T++ L G +V+ GL +
Sbjct: 353 DVQPT-VKDDVIDTDVTVEISDFQRTSTGVNNSPTKNTRKVETSMTLRDGEVVVMGGLSE 411
Query: 376 DDIQQLKEGIPLL 388
+ GI L
Sbjct: 412 GKDSIVTSGIRWL 424
>gi|91791048|ref|YP_551999.1| type II and III secretion system protein [Polaromonas sp. JS666]
gi|91700928|gb|ABE47101.1| type II and III secretion system protein [Polaromonas sp. JS666]
Length = 566
Score = 92.5 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 81/248 (32%), Gaps = 26/248 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAADFGGKFVSEGGDFS 246
QV++ V + V D G + + + A +
Sbjct: 324 RQVSVNVRVLSVALDDSDDYGINWDAVYKNLATASNAYSIALKTAFPIANGAGNLVISAP 383
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
++ AL + L TL ++ Q + G + Y SS+T +
Sbjct: 384 ATSGSRWAGSSAMISALSSQGRVTELTSSTLVTLNNQPSPVNVGRRVSYLQSSSTTQTAN 443
Query: 307 VT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYR 352
V T G + P ++ I L+ ++S G ++ P
Sbjct: 444 VGSTSSLTPGTIQTGFSMTLIPHIIDSREILLQYSIDLSSLLQLTTISSGTSSIQAPDIS 503
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
V+L SG T+V+AG +D++ + G+ + LG + +++ I +
Sbjct: 504 TSNFIQRVKLLSGETLVVAGFDQDNLSAVSNGV-GAADNVALG----SRNGSKKRNMIVV 558
Query: 413 AATPFLVK 420
P L +
Sbjct: 559 MIQPNLAQ 566
>gi|297592282|gb|ADI47020.1| PilN [Escherichia coli]
Length = 535
Score = 92.5 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 91/274 (33%), Gaps = 20/274 (7%)
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ L+ FL+ + + ++ S + + N QV L V + VR+ Q G +
Sbjct: 267 MVLATGFLTVTDTPRVLDTVS-RFVEARNREMRRQVVLNVEVLSVRKTRRDQAGIDWNAV 325
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
S + F + L AL + + + +
Sbjct: 326 FSDGRLGLTLGGAFSSAADDIITSGVSIVDGKLTGSKAFLKALSSQGTVSVVTQNSAVTK 385
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGR----- 327
+ Q Y ++ +V T G + P + R
Sbjct: 386 NMTPVPMQVASQQGYIEGVTTDTTANVGTSTSLNAATITTGFNMTLLPFIQPDARSLQLL 445
Query: 328 --IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+ L + G + +P+ ++ + T++L SG T++L+G + + +++G+
Sbjct: 446 FSMNLSDKPTFEVFESGGSRAQVPTVDLKTINQTIDLKSGQTVILSGFRQSGSKSVRQGV 505
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P L + ++T + + TP ++
Sbjct: 506 ---GS-PAFFGLGGGTDSGDDDTILVVLITPHVI 535
>gi|284008046|emb|CBA74162.1| conjugative transfer protein lipoprotein PilN [Arsenophonus
nasoniae]
Length = 534
Score = 92.5 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/356 (12%), Positives = 110/356 (30%), Gaps = 25/356 (7%)
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
+ ++ + + + + ++ I + S
Sbjct: 179 SGQIVIYALETRSFTLNFMDSQTDYQSRVVSGTTSKAGNSGGQSGNALSGDAITSQSTST 238
Query: 144 TV------VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
T+ L G V+++ + ++ ++ N + QV
Sbjct: 239 TIKSSLYADLQGAVKSMLTPGLGRMFLSAGNLTVTDVPRVLDTVERFVDERNQTLDRQVV 298
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
L + + V + Q+G + ++ S + FGG + +
Sbjct: 299 LNIEVLSVEKRQKDQLGLDWNAVFNNGRLGLSLSQAFGGAAGNIMNGGFSVVDGRLAGSK 358
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TT 309
L AL + + + + T + + Q Y ++ +V T
Sbjct: 359 VFLKALAEQAKVSVVTQQSNTTTNLSPVAMQVAEQEDYVAQVTTQSTANVGTATSIQPAT 418
Query: 310 HDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
G ++ P ++ G+ I L G ++ ++ + +++ V++
Sbjct: 419 ITTGFYINLLPNIMPDGQHLLLQFAINLSEPPTRRTFTSGESSVELLNTQLKTFTQRVKM 478
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+G T+VL+G + + K+G+ + P L + + + + TP L
Sbjct: 479 KTGQTLVLSGFQQASRKGSKQGV---GQ-PWFFGLGGGQQAEDGDRMLVVLITPVL 530
>gi|33152500|ref|NP_873853.1| putative phage-related secreted protein [Haemophilus ducreyi
35000HP]
gi|33148723|gb|AAP96242.1| putative phage-related secreted protein [Haemophilus ducreyi
35000HP]
Length = 374
Score = 92.5 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 54/287 (18%), Positives = 95/287 (33%), Gaps = 46/287 (16%)
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
++ +V D +V +G I ++ + +S V + + G
Sbjct: 124 QADGQVFAHGDKLVFYGTPAEISRAKSVL-----------------TSLDTVSKEVVVTG 166
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ EV+ + GS + G + F L+
Sbjct: 167 Y--------VFEVQTQEKE---------GSGINLFAKLLSGKLGINIGIKQSFENFITLN 209
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVT 308
+ + ++ + + ++ PTL SG +F+ G K S+
Sbjct: 210 MGNLDAMIELFKSDSRFHVVSSPTLRVKSGSKGNFSVGSDVPVLGSVKYDKEGRAVQSIE 269
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGT 367
GV+ TPTV I LRIQ ++S V + P+ R T + + SG
Sbjct: 270 YRTSGVIFDITPTVKRD-AIDLRIQQQLSNFVKTDTGVNNSPTLIKRDIVTDITVKSGEV 328
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
IVL GL ++ + G L KI E+T+I +
Sbjct: 329 IVLGGLAENKQTEGNTGFSFLPKI------LTGKSNRSEKTDIIVLL 369
>gi|320102660|ref|YP_004178251.1| type II and III secretion system protein [Isosphaera pallida ATCC
43644]
gi|319749942|gb|ADV61702.1| type II and III secretion system protein [Isosphaera pallida ATCC
43644]
Length = 1626
Score = 92.5 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/226 (18%), Positives = 74/226 (32%), Gaps = 34/226 (15%)
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG-- 282
++ A FV G +L + A + + P +T +G
Sbjct: 1381 NNTEQAATPTLAGFVPGAGATLGVSILSDLEVYLFMRAAQTDVRSNIIQAPKVTTFNGAF 1440
Query: 283 -----QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEV 336
Q+ F + V G+ L+ P + + R + L +
Sbjct: 1441 AQVASQTQQFYVASVTPVVAFGAVAFTPDVQPLPIGITLNVQPVITADRRYVRLSLNPVF 1500
Query: 337 SEPVIGV--------------------------NAGDMPSYRVRKADTTVELPSGGTIVL 370
+P++ + +TTV +P GGT++L
Sbjct: 1501 ISNASFQQFTVAGGVGGIGGIGGIGGGDGAQIATTIQLPTFTLFTVNTTVTVPDGGTVLL 1560
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
G+ + ++ + G+P+LSK P L LFRN R I + TP
Sbjct: 1561 GGVKTSEEERREFGVPVLSKTPYLNRLFRNIGIGRTSRSIMMMVTP 1606
>gi|217425271|ref|ZP_03456766.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei 576]
gi|217391876|gb|EEC31903.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia pseudomallei 576]
Length = 349
Score = 92.1 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L VT+ V G ++ + F ++ D S +
Sbjct: 101 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 160
Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
F ++ AL + +R ++T ++ Q Q Y S+T +V +
Sbjct: 161 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 220
Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
G + P VL G + L+ T +S E + P
Sbjct: 221 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 280
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
+R V + SG T+V++G + + G+ P + AL R I
Sbjct: 281 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 336
Query: 411 FIAATP 416
I TP
Sbjct: 337 VILITP 342
>gi|126441183|ref|YP_001060902.1| Type II secretory pathway, component PulD [Burkholderia
pseudomallei 668]
gi|126220676|gb|ABN84182.1| type II secretory pathway, component PulD [Burkholderia
pseudomallei 668]
Length = 448
Score = 92.1 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 75/462 (16%), Positives = 146/462 (31%), Gaps = 67/462 (14%)
Query: 1 MRYLQRTFFTMMS--IFLFSSNPSVAKLPPIK--EANAAVINISDVEIGKGKKIS-IGLN 55
M+ T M+ + F P + LP A A + G + + +
Sbjct: 1 MKRYGVLIVTAMAYSVAAFGVVPPLPMLPADASLTAAAPTLTPLKHVAGTSFDLRFVTVA 60
Query: 56 KVIILQVPVDVQDVLVSDPTKAD----------------------------VVVHSPRTM 87
+++ L + V P V + +
Sbjct: 61 QIVDLIYQEAMHTPYVLGPDVLSDGRLVSFRLDDRNRDVRTVMGDFLESLGFQVVTRNGV 120
Query: 88 YLFGKNVGQA------NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI--ADSNI-RV 138
K G A +V + +++ L LIE I M L + + V
Sbjct: 121 DYVTKKPGAAREKVDQDVFVYKPRYRRVDYLRALIEPMIGARAMPLMSPVSVPSQPVGAV 180
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
++ +T G V + +V+ L G + K V L + +V +
Sbjct: 181 QVPGETAAPAGDVP-AMPVETSVQARGDDLVIVGSHDEVALLRKVVPELDTV--PSEVVV 237
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
+ + EV T ++ + + + + +
Sbjct: 238 RGWVYEVANTDS---------TNTAWSIAVRMLSGQLRVSSGDTSSDASAVRFTGPGVDA 288
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDYG 313
+ AL + + ++ P + +SG+ G Q + S+ T S+T D G
Sbjct: 289 AISALNADSRFKVVSAPHVRIVSGERVRLNVGQQVPTQSSVSYQGSTGTPVQSITYQDAG 348
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
++ PTV+ I L+++ E+S+ V P+ R+ T L G +VL G
Sbjct: 349 LIFDVEPTVMRE-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGEVVVLGG 407
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
L++D + G L P + +++ TE+ +
Sbjct: 408 LIQDRNATARSGYAWL---P---SFLDGRSSSKQRTEVLLVL 443
>gi|187479017|ref|YP_787041.1| type IV pilus assembly protein (partial) [Bordetella avium 197N]
gi|115423603|emb|CAJ50142.1| putative type IV pilus assembly protein (partial) [Bordetella avium
197N]
Length = 117
Score = 92.1 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P R RKADT VEL G +++GL+ + IPLL +PI+G+ FR+ ++++E+
Sbjct: 2 IPVLRKRKADTMVELGDGEGFMISGLVSRQTKASVNKIPLLGDLPIIGSFFRSVQYSQED 61
Query: 408 TEIFIAATPFLVKPVAMR-DLSRPDDH 433
E+ I P L +P+A L P
Sbjct: 62 NELVIVVPPRLRQPIARGVTLPLPGAR 88
>gi|167571699|ref|ZP_02364573.1| Type II secretory pathway, component PulD [Burkholderia
oklahomensis C6786]
Length = 439
Score = 92.1 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/283 (14%), Positives = 95/283 (33%), Gaps = 26/283 (9%)
Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA----GEDQVT 197
+ V + G + + A+ + ++ S + + + +V
Sbjct: 168 AGAVQVPGESTSPANDAPAMPIEMGVQARGDDLVIVGSHDEVALLRKVVPELDTAPSEVV 227
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
++ + EV T ++ + + + + +
Sbjct: 228 VRGWVYEVANTDS---------TNTAWSIAVRMLSGQLRVSSGDTSSDTSAVRFTGPGVD 278
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDY 312
+ AL + + ++ P + +SG+ G Q + S+ T S+T D
Sbjct: 279 AAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQDA 338
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLA 371
G++ P V+ I +++ E+S+ V P+ R+ T + G IVL
Sbjct: 339 GLIFDVEPIVMRE-VIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRMKDGEVIVLG 397
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
GL++D + G L P + +++ TE+ +
Sbjct: 398 GLIQDRNATARSGYAWL---P---SFLDGRSSSKQRTEVLLVL 434
>gi|196228122|ref|ZP_03126989.1| peptidase M56 BlaR1 [Chthoniobacter flavus Ellin428]
gi|196227525|gb|EDY22028.1| peptidase M56 BlaR1 [Chthoniobacter flavus Ellin428]
Length = 1079
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/305 (14%), Positives = 86/305 (28%), Gaps = 73/305 (23%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
Q+ ++ E+ + K Q G +
Sbjct: 358 PASPQIEIEAKFVEIHSPVAKSSDVQ---------------------AGDAEGQADRPTI 396
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGA 304
F+ ++ +L + + L+ P +T + Q A + + T +
Sbjct: 397 FTDPQFQLIIRSLNQKKGVDILSSPRVTTRANQRAVVEAVREFRTPTEWEWRKESGTWKP 456
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------------VIGVNAGDM 348
T T + G+ L P + G + + + V E ++
Sbjct: 457 TKFETKNLGISLEVEPRLGRDGTLEVHAISSVVEFLGFLDLDTGKTILASRTAADGNVEV 516
Query: 349 PSY----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
P R+ ++TV L SG T +A L + + E
Sbjct: 517 PPVVPGHRSKGIYSERRKESTVNLKSGETFQIADLPETADTKALEK-------------- 562
Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
+ I + +P L+ P + + D S + ++ + GPK+
Sbjct: 563 -----HASRKRIMVFISPRLIAPASAAAGTGSDATGSPGAQGELVLHGTLD-LNGPKQMV 616
Query: 459 EVEGQ 463
V G
Sbjct: 617 AVSGA 621
>gi|262274287|ref|ZP_06052098.1| putative type III secretion system EscC protein [Grimontia hollisae
CIP 101886]
gi|262220850|gb|EEY72164.1| putative type III secretion system EscC protein [Grimontia hollisae
CIP 101886]
Length = 489
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 11/286 (3%)
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKVMNL 187
+ + + + + + RA + + + + N
Sbjct: 193 FPGAQSLIAAAITNIGQFTNLTDEEMATRAYRVKLSQGEKQALEEDEKSTKVQALPGPNA 252
Query: 188 LNIAGEDQ-VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-DF 245
L + G + V L IA + +Q+ F + ++ ++ D G S G D
Sbjct: 253 LLVRGTQEEVKLAKRIAALIDVKRRQLLFSLKVYDIATERKENLGIDGGWVNGSRGIYDI 312
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
V + F AL R++ E L + Q F S
Sbjct: 313 VVPPFTETKDFLKNFQALYSNGIARSVYETNLLVLENQQGQFGKKQT--ATLALVSNKQI 370
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLR----IQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
+ L+ T +L G++ R + E + P + + V
Sbjct: 371 QTEKIEADNSLYVTGRLLPSGQVQARVQYVEEALDDEGEESEGSQRPPRVSSQSMTSEVY 430
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+ T++L G +Q G+PL+S +P++G LF+ + ++ +
Sbjct: 431 IKPDQTVILGGFDNTVTEQRITGVPLISHLPLIGNLFKYTSESKHK 476
>gi|323669655|emb|CBJ94777.1| pilus assembly protein [Salmonella bongori]
Length = 560
Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/247 (17%), Positives = 78/247 (31%), Gaps = 26/247 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------FSV 247
QV L V + V +Q+G +I S + + + G + +
Sbjct: 313 RQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNATSASVSILDSAT 372
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
++ AL + + + Q +Y SS+T T V
Sbjct: 373 GSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVAQSSTTTTTDV 432
Query: 308 T--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSY 351
G + P + G + L++ +S+P G + +MP
Sbjct: 433 GATTSLTPGMMTTGFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYT 492
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
++R L +G +VL G + + + K G +LG + + +
Sbjct: 493 KLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLV 548
Query: 412 IAATPFL 418
I TP L
Sbjct: 549 IIITPEL 555
>gi|327412816|emb|CAX67822.1| putative pilus assembly protein [Salmonella bongori]
Length = 560
Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/247 (17%), Positives = 78/247 (31%), Gaps = 26/247 (10%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------FSV 247
QV L V + V +Q+G +I S + + + G + +
Sbjct: 313 RQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNAASASVSILDSAT 372
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
++ AL + + + Q +Y SS+T T V
Sbjct: 373 GSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVAQSSTTTTTDV 432
Query: 308 T--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSY 351
G + P + G + L++ +S+P G + +MP
Sbjct: 433 GATTSLTPGMMTTGFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYT 492
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
++R L +G +VL G + + + K G +LG + + +
Sbjct: 493 KLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLV 548
Query: 412 IAATPFL 418
I TP L
Sbjct: 549 IIITPEL 555
>gi|301019450|ref|ZP_07183622.1| bacterial type II and III secretion system protein [Escherichia
coli MS 196-1]
gi|299882211|gb|EFI90422.1| bacterial type II and III secretion system protein [Escherichia
coli MS 196-1]
Length = 358
Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 60/338 (17%), Positives = 112/338 (33%), Gaps = 33/338 (9%)
Query: 95 GQANVILIGHDG----KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
G N+ + G + + R R S+I VS + G
Sbjct: 21 GNMNIRIWTKKGVDFIAPYTPKEPVKPRYTWTYTPQYRSVAYLSDILGGYVSGSFNNSGA 80
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG----EDQVTLKVTIAEVR 206
V + + + S Y + + + D+V + + EV+
Sbjct: 81 VISDDSLKGSSGASNYINRTGDILVYYGTKEDIAILKTLVTSLDTMSDEVVVSGYVFEVQ 140
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
G + S + S A F++ + S + + + L+
Sbjct: 141 TSQSDGSGILLAAKILSDKFNISVGAAGLDNFIN----------IRTGSIDAIFNLLKTD 190
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
+ ++ P L + SASF+ G TV+++T SV GV+ + TP+ +
Sbjct: 191 SRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVLFNVTPS-I 249
Query: 324 SPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ L+IQ ++S V + P+ R T V L G I+L GL + +
Sbjct: 250 KSRTMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQKDSKAS 309
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G ++F + +T+I + V
Sbjct: 310 SGW----------SVFGSRTSESNKTDIMVMLQVRKVD 337
>gi|126696034|ref|YP_001090920.1| Type II secretory pathway component PulD-like protein
[Prochlorococcus marinus str. MIT 9301]
gi|126543077|gb|ABO17319.1| Type II secretory pathway component PulD-like protein
[Prochlorococcus marinus str. MIT 9301]
Length = 572
Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 56/305 (18%), Positives = 94/305 (30%), Gaps = 46/305 (15%)
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI- 209
T + Q + E +L K+ QV L V + +V
Sbjct: 251 ATTDERLQTVTMVGEKYLIDLANGFLQKLDIKQ----------KQVALSVKVLDVNMSDK 300
Query: 210 ---LKQIG------FQHSITGSSSGPSKSF------AADFGGKFVSEGGDFSVKGVLDRF 254
+K G F G SF D
Sbjct: 301 NSSMKDYGGKLDDAFIIGSQGKIKSAFGSFLPVFPEGNSTDATTNPGINSSQRTTNFDNK 360
Query: 255 SFETVLHALERATAIRTLAEPTLTA---------------ISGQSASFTSGGQHLYKTVS 299
SF +L A + LA PTL G G +
Sbjct: 361 SFFGLLEASIENGTTKVLASPTLLLSESSGSAGDGSSIGRKVGNEGFVEIGDKVPVDATK 420
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355
G+ + + GV L + + + V+ N G + R+
Sbjct: 421 GDGGSCTYSFETVGVKLGAKILGIDQNDYVTFTMTPIVTGISGSFNIVGCGSVSKINNRR 480
Query: 356 ADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
DT + + G T+VL G++++ +PLL +P+LG LFR+ + ++++ E+ I
Sbjct: 481 LDTGAIRIKDGETLVLTGVIQETDIDTTYKLPLLGDLPLLGGLFRSKQASKDKRELIILV 540
Query: 415 TPFLV 419
TP ++
Sbjct: 541 TPKVL 545
>gi|330862439|emb|CBX72597.1| hypothetical protein YEW_HP33920 [Yersinia enterocolitica W22703]
Length = 149
Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 6/143 (4%)
Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG-LRIQTE 335
+ ++ A K + + G +L TP ++ + + +
Sbjct: 1 MVTLNNIQAVLDKNVTFYTKL--QGDKVAKLESITSGSLLRVTPRMIDSDGVKEVLLNLN 58
Query: 336 VSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
+ + ++ +P + T L G +++L G ++D + + IPLL IP
Sbjct: 59 IQDGQQQAPLSSSEPLPEIQNSDISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIP 118
Query: 393 ILGALFRNSRFNREETEIFIAAT 415
+LG LFR++
Sbjct: 119 LLGGLFRSTNKQSHSVVRLFLIK 141
>gi|238755356|ref|ZP_04616698.1| hypothetical protein yruck0001_7710 [Yersinia ruckeri ATCC 29473]
gi|238706391|gb|EEP98766.1| hypothetical protein yruck0001_7710 [Yersinia ruckeri ATCC 29473]
Length = 540
Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 19/288 (6%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
+ ++++ + + +N N+ QV L V + V
Sbjct: 256 VTNTIKSMLTPDTGRMNLSAGVLTVTDTPRVLEKISRYINERNVELNRQVVLNVQVYSVE 315
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
+ Q+G +S S F G + + + AL
Sbjct: 316 KRTQDQLGIDLDAVFNSGSVGLSLTNAFTGSASNVLSGGVSILDGKGKGSKGFIKALSEQ 375
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318
+ + E + + + Q Y + S+ +V +T G +
Sbjct: 376 ANVSVMTEASSMTTNLSAVPIQVALQQDYASGVSTQNTANVGSTSTITKSTITTGFNMTV 435
Query: 319 TPTVLSPG-RIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
P ++ ++ L+ +S+ G + ++ R++ V + SG T+VL+
Sbjct: 436 LPFLVPQSPKMQLQFAINISDDPTMRTFSSGDTSVELTKTRLKTFTQRVNMQSGQTLVLS 495
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G ++G+ G L + +T + I TP ++
Sbjct: 496 GYQSLGKTVDRQGV---GSFRFWG-LGGGANGENNKTMLVILITPVIL 539
>gi|149195497|ref|ZP_01872574.1| type II secretion pathway protein XcpQ [Caminibacter mediatlanticus
TB-2]
gi|149134357|gb|EDM22856.1| type II secretion pathway protein XcpQ [Caminibacter mediatlanticus
TB-2]
Length = 336
Score = 90.6 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 34/213 (15%), Positives = 77/213 (36%), Gaps = 19/213 (8%)
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
I V + +++G + + D ++ + +F++ ++
Sbjct: 104 ITAVNNNKARKLGVKLDFNNPFKNILLNIVTDTA----------TISTLPSGVNFQSFIN 153
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGV 314
L +T+ +PTL I + S + S + T + D G+
Sbjct: 154 FLNSKNIAQTIDKPTLRLIDSHNYVLESVHSIPFTETSVTIDKNGNPVTKTDLKYKDIGL 213
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSGGTIVLAGL 373
++ +S I + V V + + P + +T ++L + ++AGL
Sbjct: 214 KIYIKNVFISKNSIDFDLDIYVQNIV-SILQNNQPVVDTKHFNTHIQLTKKNCSYLIAGL 272
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
+ +P+L +P +G LFR+S + +
Sbjct: 273 RSVSTISQNKKVPVLGDLPFVGLLFRSSDKSVQ 305
>gi|167950797|ref|ZP_02537871.1| type IV pilus secretin PilQ [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 263
Score = 90.6 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/227 (18%), Positives = 75/227 (33%), Gaps = 45/227 (19%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
+++ L+I QV ++ I D K +G + T S+S S G
Sbjct: 38 RLLQRLDIPVR-QVLIESRIVIANNDFTKALGVRFGATTSASAGSNEALIAGGMPGHISS 96
Query: 236 ------------------------------------GKFVSEGGDFSVKGVLDRFSFETV 259
G + G + + +
Sbjct: 97 FGIDKGTFMTTTTGQPIAAGIEIPAGSGNEALMVNLPATAPSGAINFLVGKVGSYLLQLE 156
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
L A++ ++ P + A+ G + Y+ +SS GATSV+ + + L T
Sbjct: 157 LSAMQSEGKGEVISSPRVITSDQNKATIKQGVEIPYQEATSS-GATSVSFKEAVLKLDVT 215
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
P + RI + ++ P + +P RK +TTV + +G
Sbjct: 216 PHITPDDRIRMDLEINKDSPDFSRSVLGVPPLDTRKIETTVLVDNGE 262
>gi|71901990|ref|ZP_00684038.1| general secretory pathway protein D precursor [Xylella fastidiosa
Ann-1]
gi|71728245|gb|EAO30428.1| general secretory pathway protein D precursor [Xylella fastidiosa
Ann-1]
Length = 106
Score = 90.6 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
R+ T + SG TI+LAGL+ + + G+P LSK+PI+G LF N E
Sbjct: 8 QINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRRE 67
Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSV 436
I + TP +V+ ++ D YS
Sbjct: 68 IIVLLTPEIVR--NPQEARNLTDEYSQ 92
>gi|225677418|ref|ZP_03788385.1| type II secretion system protein, putative [Wolbachia endosymbiont
of Muscidifurax uniraptor]
gi|225590562|gb|EEH11822.1| type II secretion system protein, putative [Wolbachia endosymbiont
of Muscidifurax uniraptor]
Length = 500
Score = 90.6 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/267 (15%), Positives = 86/267 (32%), Gaps = 48/267 (17%)
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ ++ +N + QV ++ I EV D G +
Sbjct: 240 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLQDGTKSII 289
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
+ ++ ++ L++ ++ P + AI+ Q A + H+Y
Sbjct: 290 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 349
Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345
S+ T T + + GVVL P++ I + I +S
Sbjct: 350 DIQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDIE 409
Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
D+P +R+ ++ +++ SG +V+ GL++ + LL +
Sbjct: 410 YVAQQSKMKLNSDIPIVEIREMNSMLKIKSGEVMVIGGLIEHREDKQS----LLHQ---- 461
Query: 395 GALFRNSRFNREET--EIFIAATPFLV 419
++ R E I +V
Sbjct: 462 ----KSKRLANNIRTVETVIFLKATIV 484
>gi|332091472|gb|EGI96557.1| general secretion pathway protein D domain protein [Shigella boydii
3594-74]
Length = 93
Score = 90.6 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
+L TP + + + I+ EVS+ + + + RK TTV G IVL GL+
Sbjct: 1 MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58
Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
D + +PLL IP++G LF+++ +E
Sbjct: 59 DDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 90
>gi|325529072|gb|EGD06072.1| putative type II secretory pathway [Burkholderia sp. TJI49]
Length = 220
Score = 90.2 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 18/183 (9%)
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSP----------------GRIGLRIQTEVSEPVIGV 343
+S+ + G + TP ++ + + I + V G
Sbjct: 5 QGYQDSSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGSPASNPQSVMMSIDIQDGNIVPGQ 64
Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
++P + R T + G ++++AG D++ K G+P LS IP++G LF+ +
Sbjct: 65 AVSNVPVIQQRNIVTKTMIDEGRSLLIAGFNDDEVHLNKSGVPWLSDIPLIGNLFKYTDK 124
Query: 404 NREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
+ E F TP +V + D S + DA R +
Sbjct: 125 SGNHMERFYLLTPRVVSTASMYAPDGSPVNPGVDAPADASGVSMYRPPDNDIAVPLTPQP 184
Query: 462 GQN 464
Sbjct: 185 LPG 187
>gi|91791253|ref|YP_552203.1| type II and III secretion system protein [Polaromonas sp. JS666]
gi|91701134|gb|ABE47305.1| type II and III secretion system protein [Polaromonas sp. JS666]
Length = 556
Score = 90.2 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 44/289 (15%), Positives = 99/289 (34%), Gaps = 32/289 (11%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-----VTLKVTIAEVRRDI 209
Q A ++S + + + + +KV + + ++Q V++ V + V
Sbjct: 273 QMLSNAGKVSASPATGTITVTDTPAVMEKVAD--FVTAQNQALNRLVSVNVRVLSVEISE 330
Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSFETVLHAL 263
G ++ + ++ F + G ++ +L AL
Sbjct: 331 GDDYGINWDAVYANLSAANPYSLALKTAFPTATGAGNLIISAPAGSNSRWAGSSAMLSAL 390
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVV 315
+ L TL ++ Q A G + Y SS T +V + G
Sbjct: 391 SMQGRVSELTSATLVTLNNQPAPVNVGRKVSYLASSSQTQTANVGSTVSLTPGVIQTGFS 450
Query: 316 LHFTPTVLSPGRIGLRIQTEV------SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+ P ++ + L+ ++ + G ++ P V L SG T+V
Sbjct: 451 MTIVPHIIDGNELLLQYSLDLSSLLKLNTISSGTSSIQAPDVATSNFIQRVRLKSGETLV 510
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+AG +D++ + G+ ++ +LG + + + + + P +
Sbjct: 511 VAGFDQDNLTAVANGV-GAAENKLLG----SRTGSTKRQILVVLIQPNI 554
>gi|58698373|ref|ZP_00373287.1| type II secretion system protein, putative [Wolbachia endosymbiont
of Drosophila ananassae]
gi|225630071|ref|YP_002726862.1| type II secretion system protein, putative [Wolbachia sp. wRi]
gi|58535127|gb|EAL59212.1| type II secretion system protein, putative [Wolbachia endosymbiont
of Drosophila ananassae]
gi|225592052|gb|ACN95071.1| type II secretion system protein, putative [Wolbachia sp. wRi]
Length = 500
Score = 90.2 bits (222), Expect = 7e-16, Method: Composition-based stats.
Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 48/267 (17%)
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ ++ +N + QV ++ I EV D G +
Sbjct: 240 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLRDGTKSII 289
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
+ ++ ++ L++ ++ P + AI+ Q A + H+Y
Sbjct: 290 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 349
Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345
S+ T T + + G+VL P++ I + I +S V
Sbjct: 350 DIQKDTRNSNQTLITKMNSVPIGIVLIIHPSINIDTSEIFMDIHPTLSRINGYVKDPDIE 409
Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
D+P +R+ ++ +++ SG +V+ GL++ + LL +
Sbjct: 410 YVAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQS----LLHQ---- 461
Query: 395 GALFRNSRFNREET--EIFIAATPFLV 419
++ R E I +V
Sbjct: 462 ----KSKRLANNIRTVETVIFLKATIV 484
>gi|323970458|gb|EGB65719.1| R64 PilN family protein type IVB pilus formation outer membrane
protein [Escherichia coli TA007]
Length = 336
Score = 90.2 bits (222), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 77/242 (31%), Gaps = 19/242 (7%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L V + VR+ Q G + S + F
Sbjct: 99 RRQVVLNVEVLSVRKTRRDQAGIDWNAVFSDGRLGLTLGGAFSSAADDIITSGVSIVDGK 158
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
+ L AL + + + + + Q Y ++ +V
Sbjct: 159 LTGSKAFLKALSSQGTVSVVTQNSAVTKNMTPVPMQVASQQGYIESVTTDTTANVGTSTS 218
Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
T G + P + R + L + G + +P+ ++ +
Sbjct: 219 LNAATITTGFNMTLLPFIQPDARSLQLLFSMNLSDKPTFEVFESGGSRAQVPTVDLKTIN 278
Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
T++L SG T++L+G + + +++G+ P L + ++T + + TP
Sbjct: 279 QTIDLKSGQTVILSGFRQSGSKSVRQGV---GS-PAFFGLGGGTDSGDDDTILVVLITPH 334
Query: 418 LV 419
++
Sbjct: 335 VI 336
>gi|320107861|ref|YP_004183451.1| type II and III secretion system protein [Terriglobus saanensis
SP1PR4]
gi|319926382|gb|ADV83457.1| type II and III secretion system protein [Terriglobus saanensis
SP1PR4]
Length = 638
Score = 90.2 bits (222), Expect = 7e-16, Method: Composition-based stats.
Identities = 59/357 (16%), Positives = 104/357 (29%), Gaps = 71/357 (19%)
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHG-MVRTIQDSQRAVELSET----------FLSQ 170
L R + I V S VV+ G + EL+ +
Sbjct: 278 DLANMTRALFGLTQIAVNTQSGAVVIRGPQAVVHRVHDLFTELASRTSDILFDINIYEVD 337
Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK--------QIGFQHSITGS 222
+ + +++A Q + + + S
Sbjct: 338 KSTTRNIGFAPPTSATAIDVASTAQKLI-------SDNQSLLSQSISSGALTLSGSTYDQ 390
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF------ETVLHALERATAIRTLAEPT 276
A S G D T L+ L +T R L
Sbjct: 391 ELQEVAFLVAAGVSGSSSFTSILGTLGSFDGIPLLGISMSSTSLNMLLNSTDARMLNALQ 450
Query: 277 LTAISGQSASFTSGGQHLYKTVSSST--------------------------------GA 304
L + Q +F G ++ T +++
Sbjct: 451 LRSSDRQEVTFRVGSRYPILTAITTSASSSDVANELAAAGVSSSVIAQLTGSSGSGSTST 510
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
+ D G+ L TP VL G + L + ++ G D+P R + V +P
Sbjct: 511 PQIQFEDIGLTLKITPRVLRSGEVQLDLDFKLESLA-GTGVDDIPILNNRALKSVVTIPP 569
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419
G T +LA L+ + + +G+P L +P F+++ N + + E+ I TP +V
Sbjct: 570 GETTMLAALVSTNETKALDGVPGLDNLPG----FQSTDRNADGAKDELLITVTPHIV 622
>gi|58696766|ref|ZP_00372303.1| type II secretion system protein, putative [Wolbachia endosymbiont
of Drosophila simulans]
gi|58537040|gb|EAL60176.1| type II secretion system protein, putative [Wolbachia endosymbiont
of Drosophila simulans]
Length = 495
Score = 90.2 bits (222), Expect = 7e-16, Method: Composition-based stats.
Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 48/267 (17%)
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ ++ +N + QV ++ I EV D G +
Sbjct: 235 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLRDGTKSII 284
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
+ ++ ++ L++ ++ P + AI+ Q A + H+Y
Sbjct: 285 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 344
Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345
S+ T T + + G+VL P++ I + I +S V
Sbjct: 345 DIQKDTRNSNQTLITKMNSVPIGIVLIIHPSINIDTSEIFMDIHPTLSRINGYVKDPDIE 404
Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
D+P +R+ ++ +++ SG +V+ GL++ + LL +
Sbjct: 405 YVAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQS----LLHQ---- 456
Query: 395 GALFRNSRFNREET--EIFIAATPFLV 419
++ R E I +V
Sbjct: 457 ----KSKRLANNIRTVETVIFLKATIV 479
>gi|168701297|ref|ZP_02733574.1| hypothetical protein GobsU_17361 [Gemmata obscuriglobus UQM 2246]
Length = 1374
Score = 89.4 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 79/239 (33%), Gaps = 38/239 (15%)
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
I +S + ++ + GG L+ T L + + P LT
Sbjct: 1118 IRATSFNRAIPGFGNYPNTPGNNGGISLGLAFLNDIQVYTFLEMAQGDQRSNIMQAPKLT 1177
Query: 279 AISGQSASFTS----------------------GGQHLYKTVSSSTGATSVT------TH 310
+GQ+A+ T Q + T + +V
Sbjct: 1178 MFNGQTATLTVAETQFFVTNVQVVSVNGQIVFIPQQQQLPSSGQGTLSITVQAVVSADRR 1237
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR----------KADTTV 360
+ L V + + L T PV + P + TTV
Sbjct: 1238 FVRLNLPVQLGVQAGAAVPLFPITTFITPVFEGGSQGQPIPFTQFLQQPSFTLLDIQTTV 1297
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P GGT++L GL + + + G P LSKIP L LF+N RE T + I TP ++
Sbjct: 1298 VCPDGGTVLLGGLKRLSESRNEFGPPFLSKIPYLNRLFKNVGVGRETTHLMIMVTPRII 1356
>gi|70732014|ref|YP_261759.1| type IV pilus protein, PilN [Pseudomonas fluorescens Pf-5]
gi|68346313|gb|AAY93919.1| type IV pilus protein, PilN [Pseudomonas fluorescens Pf-5]
Length = 613
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/280 (16%), Positives = 83/280 (29%), Gaps = 26/280 (9%)
Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRR 207
V+ + +Q A + + + + ++ + L QV V I EV
Sbjct: 287 VKAMLSTQPAGRIFLSRSTGTLTVSDRPEVLNRIASYLQSTNRNITRQVLFNVKIFEVNF 346
Query: 208 DILKQIGFQHSITGSSSGPSKSFA-----ADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
Q S + A +S V+ A
Sbjct: 347 TDRDQTAVNWKAVYKSVSGRWGLSLANKVAGISTDAISGSVSILDTSSSPWAGSSAVIQA 406
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGV 314
L I + P++T ++ Q A G Y SS+T SV T G
Sbjct: 407 LSEQGRISDVRSPSITTLNLQPAPIQIGNVKSYVASSSTTTTASVGSSTSLTPATITSGF 466
Query: 315 VLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
+ P ++ I + + + ++ + + A V L SG T+
Sbjct: 467 NMMLLPKIIDRDNMLLMISISMSSKPTFTTFTSNGSSVQTADFDTKNAAPKVLLRSGQTL 526
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
VL G ++ K G+ G L + + + +
Sbjct: 527 VLTGFEENTENADKTGV---GDASFFG-LGGSRTRSSDHS 562
>gi|50119484|ref|YP_048651.1| putative type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
gi|49610010|emb|CAG73449.1| putative Type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
Length = 554
Score = 89.0 bits (219), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/254 (18%), Positives = 82/254 (32%), Gaps = 23/254 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ ++ LN+ V L V++ V+R Q S+ G A +
Sbjct: 306 ESYIDSLNVRMNRMVKLMVSVYSVQRKGSSQTSLDWSVVGKRLDRFGLTLAGTPTATTAV 365
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ ALE + + T + A F GQ +Y +
Sbjct: 366 SSAGINVVDGKFAGTTALFRALETQGKVSVVMAHEATTTNLVPAPFQIAGQMVYLRSQKT 425
Query: 302 TGATSVTT-------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAG 346
+ + + T G + P + G I L+ S+P G
Sbjct: 426 SVSENYATTDMEPGSITTGTQMTLLPDIRDEGDIQLQFNFSHSDPAQLRKESSKDGNTKM 485
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFN 404
+MP VR V L G T++++G ++ +EG P + + G
Sbjct: 486 EMPYTTVRSLSERVNLKPGQTLIVSGYNSRNLTASREGAFDP---DVTVAG---GGKSSE 539
Query: 405 REETEIFIAATPFL 418
++ + IA TP L
Sbjct: 540 TDDVTLIIAVTPVL 553
>gi|195953100|ref|YP_002121390.1| Type II secretory pathway component PulD-like [Hydrogenobaculum sp.
Y04AAS1]
gi|195932712|gb|ACG57412.1| Type II secretory pathway component PulD-like [Hydrogenobaculum sp.
Y04AAS1]
Length = 488
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/232 (13%), Positives = 76/232 (32%), Gaps = 24/232 (10%)
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
++L + +++ + ++ + L +++ +L+ALE+
Sbjct: 250 NLLNEYSTGINLSALFQHLKNLNLSLTAPITLTNPSNSLFNAGLSGSNYDALLNALEQYG 309
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------------STGATSVTTHDYGV 314
+++ T T + Q + Y + + V+ + G
Sbjct: 310 KTKSIDSETYTVLPNQPIVYAPTNTQSYISSYNIYIPPTVAGVVSTPAYIPIVSYLNTGT 369
Query: 315 VLHFTPTVLSPGRIGLR-----------IQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
+ P + + ++ + ++ P + + T L
Sbjct: 370 SITILPRLANNKKLMVDVYYSQNTPQNLNTQNITISQGVTVPIQFPEVSSQNSVLTSVLK 429
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
G TI L + D + + GIP L +IP++ LF N+ + + I T
Sbjct: 430 PGQTIALISSVYDLKKNNEAGIPFLIRIPLIKYLFGNTDKYSNKVQFIITIT 481
>gi|330890298|gb|EGH22959.1| general secretion pathway protein D [Pseudomonas syringae pv. mori
str. 301020]
Length = 356
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/225 (17%), Positives = 72/225 (32%), Gaps = 26/225 (11%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ T + + ++V++ L+ QV ++ I EV D Q G Q
Sbjct: 133 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 191
Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
+ G + G G ++ G+ + + +
Sbjct: 192 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 251
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
AL+ L+ P L + ++AS G + T +S+ +V + G
Sbjct: 252 ALKSKGGSNVLSTPNLLTLDNEAASIFFGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 311
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
+ L+ P + G + L I EVS + R DT
Sbjct: 312 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDT 356
>gi|284006612|emb|CBA71873.1| phage secreted protein [Arsenophonus nasoniae]
Length = 334
Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/203 (19%), Positives = 73/203 (35%), Gaps = 10/203 (4%)
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
GS + G + ++ ++ + + ++ + ++ PTL
Sbjct: 138 GSGINLLAKLLSGKLGINIGIKQNYENFITINTGNLDAMIELFRTDSRFHVVSSPTLRVK 197
Query: 281 SGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
SG +F+ G T SV GV+ PT + I L+IQ ++S
Sbjct: 198 SGSKGNFSVGSDVPVLSSVTYQDGRPVQSVEYRSSGVIFDIQPT-IKSQAIDLKIQQQLS 256
Query: 338 EPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
V P+ R T V + SG IVL GL ++ +++ G L P
Sbjct: 257 NFVKTDTGVNQSPTLIKRDIVTDVTVKSGDVIVLGGLAENKLEEGGTGFSFL---P--KG 311
Query: 397 LFRNSRFNREETEIFIAATPFLV 419
+R +T+I + ++
Sbjct: 312 FLSGKSTSRTKTDIVVLLQVKVI 334
>gi|161789259|ref|YP_001595645.1| hypothetical protein BMSA_0058 [Vibrio sp. 23023]
gi|161761384|gb|ABX77030.1| Hypothetical protein BMSA_0058 [Vibrio sp. 23023]
Length = 503
Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats.
Identities = 57/345 (16%), Positives = 106/345 (30%), Gaps = 31/345 (8%)
Query: 91 GKNVGQA-NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLH 148
GK G N + G ++ + L+ + + + L
Sbjct: 174 GKATGSDQNPHVEGQFINVAYKNVDVVSDIATGIRAILKADPKNGPDTETTKTTGDSSLV 233
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G V+ I + ++N QV L + + E R +
Sbjct: 234 GEVQVIPSLSSI---------SVRTTPERMRKVESLVNRYQRELSKQVLLNIQVLEFRSN 284
Query: 209 ILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+ + G + + ++ G + F + G + KGV + + LE+
Sbjct: 285 LGHEKGIDWNVVRNTAHGALQFFIPGTNTVSLDAGYGLAFKGVGQWNGTNSFIKVLEKQG 344
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------GVVLHFTP 320
+ T T ++ Q A + Y + SS + V + GV + TP
Sbjct: 345 TVSTKTPVTALVLNNQPARISQTLTKPYLSNISSESSEGVVSSSVTRDKQTEGVDMMVTP 404
Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE--LPSGGTIVLAGLLK 375
V + RI ++ S+ VN + R++ T L G T V+ + +
Sbjct: 405 NVKNQFVWLRISGKLTKIASDHTEDVNNIKLRFLDTRESQITFTNKLRYGQTYVIGSVKQ 464
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ LS LG + + E + TP V
Sbjct: 465 TSTTAERNESFWLS---WLGGM-GSKVDTV---ETLVLLTPTRVD 502
>gi|167564548|ref|ZP_02357464.1| Type II secretory pathway, component PulD [Burkholderia
oklahomensis EO147]
Length = 400
Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/257 (15%), Positives = 86/257 (33%), Gaps = 20/257 (7%)
Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA----GEDQVT 197
+ V + G + A+ + ++ S + + + +V
Sbjct: 150 AGAVQVPGEPISPASDAPAMPIETGVQARGDDLVIVGSHDEVALLRKVVPELDTAPSEVV 209
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
++ + EV T ++ + + + + +
Sbjct: 210 VRGWVYEVANTDS---------TNTAWSIAVRMLSGQLRVSSGDTSSDTSAVRFTGPGVD 260
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDY 312
+ AL + + ++ P + +SG+ G Q + S+ T S+T D
Sbjct: 261 AAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQDA 320
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLA 371
G++ PTV+ I +++ E+S+ V P+ R+ T + G IVL
Sbjct: 321 GLIFDVEPTVMRE-VIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRMKDGEVIVLG 379
Query: 372 GLLKDDIQQLKEGIPLL 388
GL++D + G L
Sbjct: 380 GLIQDRNATARSGYAWL 396
>gi|261819950|ref|YP_003258056.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Pectobacterium wasabiae WPP163]
gi|261603963|gb|ACX86449.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Pectobacterium wasabiae WPP163]
Length = 554
Score = 87.9 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/254 (18%), Positives = 81/254 (31%), Gaps = 23/254 (9%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+ ++ LN+ V L V++ V+R Q S+ A S
Sbjct: 306 EGYIDNLNVRMNRMVKLMVSVYSVQRKGSSQTSLDWSVVAKRLDRFGLTLAGTPTATTSI 365
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ ALE + + T + A F GQ +Y +
Sbjct: 366 SSAGINVIDGKFAGTTALFRALETQGKVSVVMAHEATTTNLVPAPFQIAGQMVYLRNQKT 425
Query: 302 TGATSVTT-------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAG 346
T + + T G + P + G I L+ S+P G
Sbjct: 426 TVSENYATTDMEPGSITTGTQMTLLPDIRDEGDIQLQFNFSHSDPAQLRKESSEDGRTKM 485
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFN 404
+MP VR V L G T++++G ++ +EG P + + G
Sbjct: 486 EMPYTTVRSLSERVNLRPGQTLIVSGYNSRNLTTSREGAFDP---DVTVAG---GGKSSE 539
Query: 405 REETEIFIAATPFL 418
++ + IA TP L
Sbjct: 540 TDDVTLIIAVTPVL 553
>gi|259909855|ref|YP_002650211.1| Type IVB pilus formation outer membrane protein [Erwinia pyrifoliae
Ep1/96]
gi|224965477|emb|CAX57009.1| Type IVB pilus formation outer membrane protein [Erwinia pyrifoliae
Ep1/96]
gi|283479947|emb|CAY75863.1| Outer membrane lipoprotein bfpB; Bundle-forming pilus B; Flags:
Precursor [Erwinia pyrifoliae DSM 12163]
Length = 548
Score = 87.9 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 87/248 (35%), Gaps = 22/248 (8%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGG 243
+N NI QV L V + V + ++G ++ S G S + A + + GG
Sbjct: 303 VNERNIELNRQVMLNVQVYSVEKQQSDRLGIDWKAVFKDSLGLSFTNAYTEASEAMMSGG 362
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ G S + AL + + L + + + + Q Y + +S+
Sbjct: 363 VSIIDGKGKGSS--AFIKALAQQANVSMLTQASSMTTNLSAVPIQVALQQDYASNASTEN 420
Query: 304 ATSV--------TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDM 348
+V +T G + P ++ I + + + + + ++
Sbjct: 421 TANVGSSSSISKSTITTGFNMTVLPYLIPHTSRMQLQFAINMSDEPTIRKFTSENTSVEL 480
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
R++ + V + SG T+VL+G +G+ AL + + +
Sbjct: 481 MKTRLKTFNQRVIMSSGQTLVLSGYQSMSNTANHQGV---GSSHFF-ALGGGAEGDVNRS 536
Query: 409 EIFIAATP 416
+ I TP
Sbjct: 537 TLVILITP 544
>gi|149925851|ref|ZP_01914115.1| type II and III secretion system protein [Limnobacter sp. MED105]
gi|149825968|gb|EDM85176.1| type II and III secretion system protein [Limnobacter sp. MED105]
Length = 531
Score = 87.9 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/256 (13%), Positives = 81/256 (31%), Gaps = 31/256 (12%)
Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------GGDFSVKGVLD 252
+ +V + +G + + + G + + + G + +
Sbjct: 241 VLQVDLNDSNNMGVRWELYKAGGGINTAPDSSIAGASSTADRITQLTRTASGIETLIFGE 300
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
FS ++ L+ ++TL++P + ++G + + G + + S V
Sbjct: 301 NFSTNFLIDFLKSQGDVKTLSQPKIGLMNGTNGNIRVGQSTTFVSRVGSQIVNGVAQSTA 360
Query: 308 --TTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
G+ + T I + + ++P R+ T V
Sbjct: 361 DTQNLRTGLEVSLTGEAHDSTIYTRINISITELLALKRFTALGVDLNLPEVADRELKTQV 420
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G TI+L G+ Q + L R+ + ++TE+ + P L+
Sbjct: 421 RCRPGDTILLGGITVSRAQDDFQS--GLGT--------RSRTESTKQTELVVTIRPRLLL 470
Query: 421 PVAMRDLSRPDDHYSV 436
+ +L +P
Sbjct: 471 FGEVAELEQPAAKIKR 486
>gi|310765449|gb|ADP10399.1| Type IVB pilus formation outer membrane protein [Erwinia sp.
Ejp617]
Length = 548
Score = 87.9 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 87/248 (35%), Gaps = 22/248 (8%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGG 243
+N NI QV L V + V + ++G ++ S G S + A + + GG
Sbjct: 303 VNERNIELNRQVMLNVQVYSVEKQQSDRLGIDWKAVFKDSLGLSFTNAYTEASEAMMSGG 362
Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ G S + AL + + L + + + + Q Y + +S+
Sbjct: 363 VSIIDGKGKGSS--AFIKALAQQANVSMLTQASSMTTNLSAVPIQVALQQDYASNASTEN 420
Query: 304 ATSV--------TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDM 348
+V +T G + P ++ I + + + + + ++
Sbjct: 421 TANVGSSSSISKSTITTGFNMTVLPYLIPHTSRMQLQFAINMSDEPTIRKFTSENTSVEL 480
Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
R++ + V + SG T+VL+G +G+ AL + + +
Sbjct: 481 MKTRLKTFNQRVIMSSGQTLVLSGYQSMSNTANHQGV---GSSHFF-ALGGGAEGDVNRS 536
Query: 409 EIFIAATP 416
+ I TP
Sbjct: 537 TLVILITP 544
>gi|242279172|ref|YP_002991301.1| type II secretory pathway component PulD-like protein
[Desulfovibrio salexigens DSM 2638]
gi|242122066|gb|ACS79762.1| Type II secretory pathway component PulD-like protein
[Desulfovibrio salexigens DSM 2638]
Length = 497
Score = 87.9 bits (216), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/251 (17%), Positives = 80/251 (31%), Gaps = 31/251 (12%)
Query: 182 KKVMNLLNIAGEDQVTLKVTI--AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
K + LN QV L V + E+ R+ +GF + S S +
Sbjct: 253 GKYIKSLNTKMGRQVALAVKVWALEMNRNA--DVGFDIESMLKAGQSSFSMLGGQPYTTL 310
Query: 240 SEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
S G + + + +L AL++ L + ++ Q+ + Y
Sbjct: 311 SGAGTLTAAILDGNWKDTKLMLRALKQRGRTTLLTSGSGIVMNNQALPVQVVKRDTYLAG 370
Query: 299 SSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVN 344
SST + G + P +++ + L+ +S E G
Sbjct: 371 ISSTTTENSMQTSELTPGEVSTGFSMTVIPHIMNNRKAILQYNITLSSLDSMDEFTSGDL 430
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+P R V++ G T+VLAG ++ QQ K +G
Sbjct: 431 TIQLPQVSTRSFSQRVKMKCGQTLVLAGFEQETDQQSK----------GIGISAGGHSQK 480
Query: 405 REETEIFIAAT 415
++ I T
Sbjct: 481 YGKS--LIIIT 489
>gi|290243131|ref|YP_003494801.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
gi|288945636|gb|ADC73334.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
Length = 611
Score = 87.5 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 60/380 (15%), Positives = 120/380 (31%), Gaps = 41/380 (10%)
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
+ + A ++ VE ++L R I + + EL E + Q +
Sbjct: 132 GSVGDLIEALEAVRDVAVEYRGGHLLLRSDSRYILSAPQNEELVERLVEQIEDLGGSAVR 191
Query: 181 SKKVMNLLNIAGE-------DQ-----------VTLKVTIAEVRRDILKQIGFQHSITGS 222
+ ++ +Q V L++ + +VR + ++ GF +
Sbjct: 192 GELDAGVITYRAAPNAHEDIEQYVERAARNAAVVHLQLALLDVRLNREERKGFNWNELAV 251
Query: 223 SSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
G + + G+ ++ + + S VL+AL T + TLT ++
Sbjct: 252 RMGSLVNTDVEQLGEMLTFTRQGVGAEVQRNDVSVTAVLNALSEYGDATTEQDITLTTVA 311
Query: 282 GQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPG------- 326
G SGG+ + +T SV T G+ + TP +
Sbjct: 312 GSEVDMRSGGEIPFVGDLDTTVSGESNIRSGASVDTQSVGIEVAITPRYDASTDLVTSSI 371
Query: 327 RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ L ++ E +G+ G + P + L G ++ G+ D + Q
Sbjct: 372 DMDLTDVVQIREFDVGLEGGTLSHPELQDLSFTNISRLRPGEATLIGGIAYDQVDQDFTS 431
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
+ L A + R + + +FI P + D P + D
Sbjct: 432 LAGLED-----AKAGSQRISTDRHAMFILLRPTVTVFTDEGDDLLPLPGTARACDTSVVS 486
Query: 445 FNRVNKIYGPKEASEVEGQN 464
++ A G +
Sbjct: 487 IGEDEELVETTAAYFRSGSD 506
>gi|293602243|ref|ZP_06684692.1| PilN family type IV pilus biogenesis protein [Achromobacter
piechaudii ATCC 43553]
gi|292819386|gb|EFF78418.1| PilN family type IV pilus biogenesis protein [Achromobacter
piechaudii ATCC 43553]
Length = 582
Score = 87.5 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 44/249 (17%), Positives = 82/249 (32%), Gaps = 27/249 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT----GSSSGPSKSFAADFGGKFVSEGGDFSVK 248
Q +T+A V+R G + + G + + A S
Sbjct: 318 TRQALFNITVAVVQRTETDDQGLDLTAVYKSLNGNYGITVANAFTAASSAGSASIGILDT 377
Query: 249 GVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
F + +L AL + + +P++T ++ Q Q Y S+T
Sbjct: 378 ATGTAGQFAGSKAILRALSSQGRVSIVTQPSVTTLNYQPVPVQVAKQTSYLAAVSNTATA 437
Query: 306 SVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSY 351
V T G + P ++ ++ L+ +S G N+ ++P
Sbjct: 438 QVGSTSALTPGTVTTGFSMDLLPFMIDSEQMLLQFTMNLSTDPRLRTVTSGDNSIEVPEV 497
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE-I 410
R V L SG T++L+G ++ + + G+ S L E +
Sbjct: 498 DSRIFSQRVRLRSGQTLILSGFEQNVDRGNRSGMFSPSN-----WLTGGGGSTNNRREVV 552
Query: 411 FIAATPFLV 419
I TP ++
Sbjct: 553 VILITPIVL 561
>gi|253688457|ref|YP_003017647.1| type II and III secretion system protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251755035|gb|ACT13111.1| type II and III secretion system protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 388
Score = 87.5 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 50/238 (21%), Positives = 92/238 (38%), Gaps = 20/238 (8%)
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
L++I D+V + + E++ + G Q + + +S + S+ +
Sbjct: 167 LIDIRA-DEVVVSGYVYEIQTNSRDGSGLQLAASLLNSKLNFQIGG-------SDSRGYE 218
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ S ++ + T T++ PTL SG +A F+ G +S G ++
Sbjct: 219 NFLKISSGSMNALVELFKTDTRFSTVSAPTLRVRSGANAVFSVGNSTPTLGSTSFQGQSA 278
Query: 307 VT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVEL 362
+ D GV+ +P + I LRI+ E+S N D P+ R+ T + L
Sbjct: 279 IQSVVYRDAGVIFDVSP-AVRLDAIDLRIRQELSNFTSTQNGVNDSPTLIKREISTDISL 337
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G I+L GL D G L F + + ++T+I I ++
Sbjct: 338 SDGDIILLGGLADDKKTASGTGFSWLPS-------FTSQGSSADKTDIVIVLQVRKIR 388
>gi|238796228|ref|ZP_04639738.1| Type II secretory pathway, component PulD [Yersinia mollaretii ATCC
43969]
gi|238719921|gb|EEQ11727.1| Type II secretory pathway, component PulD [Yersinia mollaretii ATCC
43969]
Length = 555
Score = 87.1 bits (214), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/276 (15%), Positives = 86/276 (31%), Gaps = 28/276 (10%)
Query: 169 SQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAE--VRRDILKQIGFQHSITGSS 223
+ S S +V + A + QV +KV + V R+ Q
Sbjct: 275 NTSITVTAPASVVDRVGRQIQEANKQLLRQVAIKVDVYSFNVDRNSNWQFDLTAKFKTGV 334
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
+ A G S + VL+ LE+ + + +T +SGQ
Sbjct: 335 AQYGVGSTAMLSDGSNLVGSLTSSITGGRFDGSKAVLNMLEQNGDVSVVTTANVTTMSGQ 394
Query: 284 SASFTSGGQH-------LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
+ + +T + G ++ P V+ G++ ++ +
Sbjct: 395 PVPVQVSNSRGYVSAVKVEMNDNKTTTTAESSMVTAGFSMNILPNVMDDGKVLMQYNMNI 454
Query: 337 SEPVIGVNAG------------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
S V N +P+ R + + +G T+V+AG + G
Sbjct: 455 STLVGKDNGFETVIIDNNGTKMQLPNVDQRSFIQSGMVNNGSTLVMAGFEQVLNNSGDSG 514
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ +LG N + + + I TP ++
Sbjct: 515 Q-GSANFKLLG---GNRKGQQSREILVICITPVVLD 546
>gi|240142427|ref|YP_002966937.1| putative type IVB pilus formation outer membrane protein
[Methylobacterium extorquens AM1]
gi|240012371|gb|ACS43596.1| putative type IVB pilus formation outer membrane protein
[Methylobacterium extorquens AM1]
Length = 601
Score = 87.1 bits (214), Expect = 6e-15, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 85/301 (28%), Gaps = 50/301 (16%)
Query: 165 ETFLSQSGRNQYANSSSKKVMNL-------LNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
F +++ V+ + QV L + + V +
Sbjct: 294 GRFEISPATGTLTVTATPNVVQRVQEYADVMRKRMNGQVALSIQVLNVSLEDADSFDNNV 353
Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF----------------SFETVLH 261
+ S F + S G L+ + + +
Sbjct: 354 AALFLGSNKGAFALGRRSPGFNASDPRSSTIGNLNSATPSLGYAILDPTSPFANTQGAIS 413
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----------SVTTH 310
AL + + +LT ++G + + ++T T T
Sbjct: 414 ALAERGNVSVVTSASLTTVNGSPVPLQVVNKRNFVKNVTNTQGTGLSTGVASTTIQTDTV 473
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTV 360
G L P ++ G + L+ +SE + + +P+ R
Sbjct: 474 STGFNLQMVPRIMQDGNVLLQYGMNISELVGREDGFDTFTVNGSTVQLPNVNQRNFVQQS 533
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE-IFIAATPFLV 419
+P+ T+VLAG ++G+ P L R ++ E + I TP L+
Sbjct: 534 IVPNRSTLVLAGFETARSTSSQQGV---GD-PR-NWLLSGGRTSKNRREVVVILITPTLL 588
Query: 420 K 420
Sbjct: 589 D 589
>gi|224373205|ref|YP_002607577.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH]
gi|223589165|gb|ACM92901.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH]
Length = 396
Score = 87.1 bits (214), Expect = 6e-15, Method: Composition-based stats.
Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 20/210 (9%)
Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
+ K+IG +I + S + +F + L
Sbjct: 172 INNKKAKEIGTDLNIKSPFHSSALFDLVTDTAVVSSSITN----------NFSAFIKFLN 221
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLH 317
A T+++PT+ I + + S Y T S +T T + D G+ ++
Sbjct: 222 SKGAAETISKPTILLIDSSNYTLESVHSIPYVTKSVTTDKDGNPVTQTDLKYKDVGLKIY 281
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT-IVLAGLLKD 376
++ I + V V N D P + +T V+L + ++AGL
Sbjct: 282 IKNVYITDRSIDFDMDIYVESIVSYDN--DKPITDTKHFNTHVQLTKKSSGYLIAGLRTV 339
Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
G+P+L IPILG LF+ ++ + E
Sbjct: 340 TKISEDSGVPVLKDIPILGILFQKNKKSVE 369
>gi|42520368|ref|NP_966283.1| type II secretion system protein, putative [Wolbachia endosymbiont
of Drosophila melanogaster]
gi|42410106|gb|AAS14217.1| type II secretion system protein, putative [Wolbachia endosymbiont
of Drosophila melanogaster]
Length = 500
Score = 87.1 bits (214), Expect = 6e-15, Method: Composition-based stats.
Identities = 35/227 (15%), Positives = 76/227 (33%), Gaps = 34/227 (14%)
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ ++ +N + QV ++ I EV D G +
Sbjct: 240 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLQDGTKSII 289
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
+ ++ ++ L++ ++ P + AI+ Q A + H+Y
Sbjct: 290 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 349
Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345
S+ T T + + GVVL P++ I + I +S
Sbjct: 350 DIQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDIE 409
Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
D+P +R+ ++ +++ SG +V+ GL++ +
Sbjct: 410 YVAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQ 456
>gi|322514180|ref|ZP_08067245.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
gi|322119966|gb|EFX91968.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
Length = 162
Score = 86.7 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 3/142 (2%)
Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
+ K ++ + +++ + V VS P AD + T L+ K G+A +
Sbjct: 20 AFSHTAVAKTFALEQGQSQLIKTDAKIDTVFVSSPDVADYEILDDNTFMLYTKAEGRAEI 79
Query: 100 ILIGHDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
+ DG + +IA ++ +SN+ ++ + V+ G + +
Sbjct: 80 VAFDVDGTPLTEDFVNVNNAINNIAAANAQIQTRFPNSNLSIKKIGKAYVIEGKAKNAAE 139
Query: 157 SQRAVELSETFLSQSGRNQYAN 178
S+ + L + A
Sbjct: 140 SEEINRIVGESLGAGRKVVEAK 161
>gi|254362930|ref|ZP_04978997.1| PulD family bacteriophage secretion protein [Mannheimia haemolytica
PHL213]
gi|153094576|gb|EDN75393.1| PulD family bacteriophage secretion protein [Mannheimia haemolytica
PHL213]
Length = 377
Score = 86.7 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 55/302 (18%), Positives = 94/302 (31%), Gaps = 45/302 (14%)
Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
I RD+ +L L+ +V D +V +G I + ++ +T
Sbjct: 113 IHRDVDYLASFLKD--GTEGNQVFASGDKLVYYGTSEDIARVKSILKSIDT--------- 161
Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
+V + + EV+ GS +
Sbjct: 162 ----------------KSREVVVTGYVFEVQ---------NIEKEGSGINLLAKLLSGKL 196
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL- 294
G V + ++ + + + R ++ PTL SG +F+ G
Sbjct: 197 GISVGYKQSYENFITVNAGNLDAMFELFRTDQRFRVVSSPTLRVKSGSRGNFSVGSDVPV 256
Query: 295 --YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
T S+ GV+ PT + I L+IQ + + P+
Sbjct: 257 LSNVTYQDGRPIQSIEYRSSGVIFDIQPT-IKDKAIDLKIQQLSNFIKTDTGVNNSPTLV 315
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R T V + SG IVL GL ++ I + LL K G L +T+I +
Sbjct: 316 KRDLVTDVTVKSGDVIVLGGLAENKISNGETSFSLLPK----GWL-SGKSNENTKTDIIV 370
Query: 413 AA 414
Sbjct: 371 LL 372
>gi|329905867|ref|ZP_08274251.1| Lipoprotein [Oxalobacteraceae bacterium IMCC9480]
gi|327547462|gb|EGF32282.1| Lipoprotein [Oxalobacteraceae bacterium IMCC9480]
Length = 243
Score = 86.7 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 72/240 (30%), Gaps = 20/240 (8%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGV 250
QV + VT+ V G Q + + +
Sbjct: 2 SRQVMVNVTVLAVTLTRGDNYGIQWDAVYQTLSRKYGLSNSLAKVANTNAFSAAILDTAT 61
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--- 307
++ AL +R ++ ++ Q Q Y S +T +V
Sbjct: 62 SKLAGSAMMIEALSEQGRVRRETSASVVTLNNQPVPVQVAKQTSYLKSSQTTQVPNVGST 121
Query: 308 -----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKA 356
T G + P VL+ G + L+ T++S + + P R
Sbjct: 122 TTLTPGTITTGFNMSILPNVLNNGTVLLQFSTDISSLRSLRTVSSSTASIETPETETRNF 181
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
V + S T++++G + D ++G+ P L + + I I TP
Sbjct: 182 LQRVAMKSNETLIISGFEQTDDNLTQQGV----GTPANLLLGGSLGAGSNKEIIVIMITP 237
>gi|254003197|ref|YP_003052663.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Methylovorus sp. SIP3-4]
gi|253987280|gb|ACT52136.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Methylovorus sp. SIP3-4]
Length = 559
Score = 86.7 bits (213), Expect = 8e-15, Method: Composition-based stats.
Identities = 50/287 (17%), Positives = 99/287 (34%), Gaps = 30/287 (10%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ V + T N + ++ + N+A QV + V + V G +
Sbjct: 275 KVVVTAATGTITVSDNPQVLAQVERYVQQQNMAMGRQVVVNVHVYSVSLSNSDSYGINWN 334
Query: 219 ITGSSSGPSKSFA-----------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+S + F + K ++ G S + + + AL +
Sbjct: 335 AVYNSLSGNFGFTLSNAFAPETGSTNLALKILATAGSASNSELKAFAGSQVMFDALSKQG 394
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---------HDYGVVLHF 318
+ + ++T ++ Q A G Q Y SS+T T + + G ++
Sbjct: 395 RVSQITSSSITTLNNQPAPIQVGRQRTYLASSSTTIGTVGSPSVTTLQPGLINTGFSMNL 454
Query: 319 TPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
P +L + L+ ++S G ++ P R V+L SG T+V+ G
Sbjct: 455 VPHILDSKELLLQYAVDLSSLIGITTVTSGTSSIQTPEIETRNFLQRVKLNSGDTLVVTG 514
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ + +GI S + + G L N N + + P ++
Sbjct: 515 FEQTQDEANMQGIGDASNVSLGGGLTGNKGRNV----LVVLIQPVII 557
>gi|89885889|ref|YP_516087.1| Type II secretory pathway component PulD-like [Rhodoferax
ferrireducens T118]
gi|89347887|gb|ABD72089.1| Type II secretory pathway component PulD-like [Rhodoferax
ferrireducens T118]
Length = 475
Score = 86.7 bits (213), Expect = 8e-15, Method: Composition-based stats.
Identities = 63/463 (13%), Positives = 141/463 (30%), Gaps = 70/463 (15%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEA-NAAVINISDVEI-GKGKKISIGLNKVIILQVPVDVQD 68
+ L +S+ +A + EA N+ +IS+ +++ + ++
Sbjct: 5 LTVALLVASSAFMAGCAQLPEATGDTTGNVGASGPIAPAPEISV-VDRSPDRTRNIGKEE 63
Query: 69 VLVSDP----------TKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLD 113
+ ++ P +V + S R L GKN+ + + G + K M
Sbjct: 64 LFIAQPLQSSDPMPRINIENVTILSSRVYELMRTLLDGKNI---SFSISGVNSKVMRR-H 119
Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTV----------------VLHGMVRTIQDS 157
+ LE L F T+ ++ + + S
Sbjct: 120 VSASNITGDLEQILDDFANSVGFYWHYKGGTLHIAPDRQYIATIPPIDDVYESMPPMLQS 179
Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL--KVTIAEVRRDILKQIGF 215
A+++ S +S+K+ L +++ + V + +V D + G
Sbjct: 180 MGAIDVFVDRTSHLVTYSANREASEKIDGYLKHIRDNKKMISYDVYVWQVELDGDHKNGI 239
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
+ + G FS + + L I +++P
Sbjct: 240 RWEKLDEEIASKRGVKRQAASSDAKLGAGFSSTFGRGELPIDVLSSFLSAQGKIHAISQP 299
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------GVVLHFT-----PTVL 323
+ ISG ++F G +Y + ++ V G+ L TV
Sbjct: 300 KMAMISGGKSTFRIGNTTVYAKQVGTDSSSGVNKTTVTTAQALSGIELTVVGNLDGETVY 359
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
+ ++ L + + +P R+ T + G +++LAG+ +
Sbjct: 360 TDIQMKLNDLLRFNSFSANGISLQLPQNANRELSTLARIRPGNSLLLAGINISRTDDSRT 419
Query: 384 GIPLLSK--------IPILGALFRNSRFNREETEIFIAATPFL 418
+ +P + + TE+ + +P +
Sbjct: 420 ----VKDAREKNSMTLP------NSMYETEQRTELVLVFSPNV 452
>gi|299140102|ref|ZP_07033271.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX8]
gi|298597948|gb|EFI54117.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX8]
Length = 654
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/253 (17%), Positives = 89/253 (35%), Gaps = 42/253 (16%)
Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
S + + F G G + + + L+A + RTL + + A
Sbjct: 409 SGTVNASQFTNLLGVLGHFSGLPLAGVFLGSNTNLNLSLNA----SDARTLDDIQVRAND 464
Query: 282 GQSASFTSGGQHLYKTVSSSTG---------------------------------ATSVT 308
Q +F +G ++ T + S+G +
Sbjct: 465 NQPVNFRAGTRYPITTSTYSSGGSNSLPSSLAGVNVGGTNLNTLLQQYLGTSTVTIPQIQ 524
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
D G+ + TP +L G + L ++ ++ E + + +P R +T+ +P+G
Sbjct: 525 YEDLGITVKTTPRILRSGDVRLTLELKI-EALGTGSNDGIPILTNRSLTSTITVPAGKEA 583
Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP--VAMRD 426
+LA + D + GIP L++IP N + E+ I TP +V+ + +
Sbjct: 584 LLASEISRDESRSMSGIPGLNEIPGFQG--TNEDKEVDTDELLITITPHIVRAGDMRIAS 641
Query: 427 LSRPDDHYSVEDD 439
+H +
Sbjct: 642 KRLAVEHTAKPSQ 654
>gi|90411855|ref|ZP_01219863.1| putative type II protein secretion system D protein [Photobacterium
profundum 3TCK]
gi|90327113|gb|EAS43485.1| putative type II protein secretion system D protein [Photobacterium
profundum 3TCK]
Length = 438
Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 33/233 (14%)
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
E++ GF + S + G S + F+F V++A
Sbjct: 216 VEIKESDGN--GFDWKTLNILANLDGSEMLNNGFSLTSGN---RLGITGKNFNFSLVMNA 270
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-------TVSSSTGATSVTTHDYGVV 315
L + ++ +SG+ A + + Y + + + + G+
Sbjct: 271 LNEYGQTEAIQNTSIKTLSGKEAVLKTTERTPYIDKIEIMNNGEFTEKGFTTSETETGLE 330
Query: 316 LHFTPTVLSPGRI----------GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
L P ++ L+ VS +N P+ ++ ++ V + +G
Sbjct: 331 LKILPYFDKDSKMLNIKVDLKNSSLKGFLNVSNDDFELN---QPNTEEQEFNSVVRIRAG 387
Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
T V+ GL+ + I + ++++ + +FI P +
Sbjct: 388 ETSVIGGLIYYKQNKSGNNI--------FNEITQSNKKEFSKNALFILIRPTV 432
>gi|59714382|ref|YP_207156.1| hypothetical protein VF_B0026 [Vibrio fischeri ES114]
gi|59482659|gb|AAW88268.1| hypothetical protein VF_B0026 [Vibrio fischeri ES114]
Length = 479
Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/323 (14%), Positives = 98/323 (30%), Gaps = 39/323 (12%)
Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
Q LN++ + + + +L + + +I + +S + L V + ++
Sbjct: 180 QYLNVEYKDVQIVDEIAASLEKVLGGDDIAKKSISVSPALS-SVTVTATIDQMQDI---- 234
Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGP 226
+ V++ QV L + + E R ++ + +I + +G
Sbjct: 235 --------------EYVIDHYKKELSKQVILDIQMIEFRSNLGTEHSIDWNIVKDTGNGL 280
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ F G + G E+ + LE+ ++ T T ++ Q A
Sbjct: 281 LQFFVPGTTTISQGAGYGLAFTGKGKWTGTESFIRVLEQQGSVSTQTPITAMILNNQPAK 340
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG------------LRIQT 334
T Y +SS + V + + I L+
Sbjct: 341 ITQQNVIPYIYEASSESSEGVISASVTRKTEVEGVDMMVNSIIQDEYVSLRISGQLQKIF 400
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
S +G M S + + +L G T V+A + + +
Sbjct: 401 NRSTEKVGDVNLGMLSTQKSEITFANKLRYGQTFVIASVKQTSKTAEQTKSFWT------ 454
Query: 395 GALFRNSRFNREETEIFIAATPF 417
LF + + E + TP
Sbjct: 455 -ELFGGTGTRNDTVETLVLLTPR 476
>gi|269105263|ref|ZP_06157955.1| hypothetical protein VDA_000083 [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268160527|gb|EEZ39028.1| hypothetical protein VDA_000083 [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 486
Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/290 (15%), Positives = 83/290 (28%), Gaps = 26/290 (8%)
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
VVL + + + ++V++ QV L++T+
Sbjct: 204 KVVLKSDSEDNKLIGDVQSVPSMGSITVRTTPSRMAQVRQVVDKFQQELAKQVLLEITVL 263
Query: 204 EVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
E R ++ K G + G K + G + A
Sbjct: 264 EFRSNLGKDQGIDWQLLKNVGDGTIKFLIPGTTATATGNPAGLAFTGTGKWDGTTAFIKA 323
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------GVV 315
LE + T ++ ISG A + Y + S+ + T+ GV
Sbjct: 324 LEEQGTVSTQTPISMLTISGYPARISQTITTPYLSDVSTEVTETTTSTSTTRDKVVEGVD 383
Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE--LPSGGTIVL 370
+ V R+ ++ + +N + + R AD + L G T+V+
Sbjct: 384 MMVNAKVQKGVVSLRVTGKLTKIAGDTTEKINDATLRFIKTRDADLSFVNKLRYGQTVVI 443
Query: 371 AGLLKDDIQQLKE---GIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
+ + K GI L E E + TP
Sbjct: 444 GSIKQQSTGANKSSSFGIDGLG----------MQSTTNETVETLVLLTPR 483
>gi|330883499|gb|EGH17648.1| general secretion pathway protein D [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 98
Score = 85.2 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
SG T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++
Sbjct: 10 AKSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI-- 67
Query: 422 VAMRDLSRPDDHYSV 436
+ + D Y
Sbjct: 68 TSSSQARQVTDDYRQ 82
>gi|310765409|gb|ADP10359.1| hypothetical protein EJP617_06780 [Erwinia sp. Ejp617]
Length = 559
Score = 84.4 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 46/251 (18%), Positives = 79/251 (31%), Gaps = 27/251 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L + I V + +Q+G + S + S + +
Sbjct: 313 SRQVQLNIQIVSVSQSRNEQLGLDWGLIYRSLNNYGASLTGSMASASSSAASAGISILDT 372
Query: 253 RFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
++ AL + T + ++ Q + SSST
Sbjct: 373 ATGNAAKFSGSSMLIKALSEQGNVSMALNQTDPTANLIPVAYQLSNQKGILSSSSSTATA 432
Query: 306 SV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--------VIGVNAGDMP 349
+V TT G+ + P + G + L+ + P G D+P
Sbjct: 433 NVGVTSTMTTTTITTGLFMTMLPFIQENGDVQLQFAFSYTSPPQIEKFISADGNTRNDLP 492
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ V L SG T+VL G + ++ K+G I+G R T
Sbjct: 493 TTSTEGLTRKVNLRSGQTLVLTGSEQQNVSTDKQGTFTPGNF-IMG---GGQAGTRGRTT 548
Query: 410 IFIAATPFLVK 420
+ I TP L++
Sbjct: 549 LVIMITPVLLR 559
>gi|332283584|ref|YP_004415495.1| PilN family type IV pilus biogenesis protein [Pusillimonas sp.
T7-7]
gi|330427537|gb|AEC18871.1| PilN family type IV pilus biogenesis protein [Pusillimonas sp.
T7-7]
Length = 575
Score = 84.4 bits (207), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/259 (15%), Positives = 78/259 (30%), Gaps = 29/259 (11%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+ ++ +N Q L VT+A V +G ++ S+ + +
Sbjct: 313 QYIDKINERMSRQAMLYVTVASVTLTDSDSLGINWNLVWQSASGNYGAGLMNALSPLEGA 372
Query: 243 GDFSVKGVLDRF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ + +L AL + A+ + + +T Q + Y
Sbjct: 373 SSVGFGILDTATGRAGQFAGTQAILSALSKQGAVSIMRQRGVTTQHLQPTPIHLTNEEQY 432
Query: 296 KTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
S T V + G + P + + L+ +S P +
Sbjct: 433 VCGRSQTNTAQVGSTESIQMCSVVTGFAMDILPDIHGQN-LTLQFSLNMSPPAVIQQVPG 491
Query: 348 MP-------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK-IPILGALFR 399
P S + V + SG T+V++ + K+GI S IP G
Sbjct: 492 DPDKPVFIASVDRQVFLQRVGMRSGQTLVISDFQEASETSTKQGIGGTSTWIPTGGG--- 548
Query: 400 NSRFNREETEIFIAATPFL 418
+ + I +P +
Sbjct: 549 --VREKARKVLVIIISPRI 565
>gi|37523454|ref|NP_926831.1| hypothetical protein gll3885 [Gloeobacter violaceus PCC 7421]
gi|35214458|dbj|BAC91826.1| gll3885 [Gloeobacter violaceus PCC 7421]
Length = 299
Score = 84.4 bits (207), Expect = 4e-14, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 25/235 (10%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV--------- 259
+G ++ GS+ AA G + G+ V +
Sbjct: 43 FGLDLGNGGALGGSTFPQYSGLAAGAGALSTAPLGNNGVLPNRSALTLTFANIVLQLQLL 102
Query: 260 --LHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVV 315
++AL+ L + L G++A+ + Q VS+ T +S +
Sbjct: 103 QQVNALQT------LIDQQLVVSDGETATISQNVQFRIPQTIVSNGTALSSTQAINARTT 156
Query: 316 LHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD-TTVELPSGGTIVLAGL 373
L+ TP VL S ++ + ++ + S+P D + L SGG +L G+
Sbjct: 157 LNLTPMVLPSKKQVAISVRGDFSDPQGSGEGL---VINTNSIDIPNLRLDSGGVALLGGI 213
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDL 427
+ D ++ +P+LS IPILG LF++S ++ + + P + +P+A +L
Sbjct: 214 TRHDEANIEYRVPVLSAIPILGDLFKSSNRVVKDQRLLVMIEPVIQEQPLAGAEL 268
>gi|189424031|ref|YP_001951208.1| type II secretory pathway component PulD-like protein [Geobacter
lovleyi SZ]
gi|189420290|gb|ACD94688.1| Type II secretory pathway component PulD-like protein [Geobacter
lovleyi SZ]
Length = 510
Score = 84.0 bits (206), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/275 (13%), Positives = 80/275 (29%), Gaps = 57/275 (20%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--------------------- 234
VT+++ + VR + +G S F
Sbjct: 236 VTMRIVLMNVRLNNGNSLGIDWSQMAVGWQSQNIQNLGFKKLAKLDDSSSSTGTTTGTTT 295
Query: 235 -----------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G + ++ RFS + +E + + +SG+
Sbjct: 296 TTTPATNLFEQGIGALFNTSGANLFMESSRFSLSALFSFMENFGKYNVMQNVFVETMSGK 355
Query: 284 SASFTSGGQHLYKTVSS----------STGATSVTTHDYGVVLHFTPTVLSPGR---IGL 330
+ Y + + +T GV++ FTP + I L
Sbjct: 356 KGKIEIVTESPYVSEIGISSLSSTSGATAATAKTSTAKAGVIMDFTPYYNKKQQMLTINL 415
Query: 331 RIQTEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
++ E + ++AG P + +T + + ++ GL+ + G
Sbjct: 416 KVNVEGVNRYVTISAGSQLGSFMQPETTKKSVETFLRMKPEQVAIIGGLVYEMNDDNVNG 475
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+P L +N +E+ E+ I P ++
Sbjct: 476 LP--GDT----YLTKNVTGKKEKEELVIVVKPTII 504
>gi|283779820|ref|YP_003370575.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
gi|283438273|gb|ADB16715.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
Length = 1305
Score = 84.0 bits (206), Expect = 5e-14, Method: Composition-based stats.
Identities = 49/256 (19%), Positives = 84/256 (32%), Gaps = 52/256 (20%)
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
+GF+ GS+ F A F +L +L+A +
Sbjct: 1043 SADLDLGFRQGSFGSAVPQFGGFDAGTAASFG--------FAILSDIEVFFLLNAAQGDD 1094
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYK----------------------TVSSSTGAT 305
L P +T +GQ A + Q + +S +
Sbjct: 1095 RTNILQAPKVTLFNGQQAFVSDTSQRPFVISVIPVVGDFAAAQQPVIAVLNEGTSLSVQG 1154
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQT--------EVSEPVIGVNAGDMPSYRVRKAD 357
V+ V L P + G + T V + + + R
Sbjct: 1155 VVSPDRRFVRLTMVPFFSTIGDVDTFTFTGSTTTDSGSVIQDPSNPDENATDNVRTTTEG 1214
Query: 358 TTVE--------------LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
TTV+ +P GGT++L G+ + + + G+PLLSK+P + LF+N
Sbjct: 1215 TTVQLPTFAFTTVTTTVSVPDGGTVLLGGIKRLREGRNERGVPLLSKVPYVSRLFKNVGI 1274
Query: 404 NREETEIFIAATPFLV 419
RE + + TP ++
Sbjct: 1275 GREAQSLMMMVTPRII 1290
>gi|120536911|ref|YP_956969.1| Type II secretory pathway component PulD-like [Marinobacter
aquaeolei VT8]
gi|120326745|gb|ABM21054.1| Type II secretory pathway component PulD-like [Marinobacter
aquaeolei VT8]
Length = 547
Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 78/239 (32%), Gaps = 18/239 (7%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV L++ A V + + ++ + + ++ +
Sbjct: 308 RQVYLQIRTAAVSVESANDFNVTWNNILNTVNSGAFELSSQTAEVPTQNLPNVFNVIRTS 367
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------- 305
L L + E +T +S Q S + Y + S AT
Sbjct: 368 NGASLALELLASELESTEVNEQAVTTLSNQPTSLKVLTETGYISGISQQDATVNADNLVS 427
Query: 306 --SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVE- 361
T + G P V+S R+ L++ E+S + VN + R ++ V+
Sbjct: 428 DVQTDTVNIGFDATLLPRVISESRLQLQVALELSSNLTLVNFDSTIVQTPTRDRNSVVQR 487
Query: 362 --LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G T VLA ++G P L + ++EE + + TP +
Sbjct: 488 AWLRNGETWVLAAFNSSKSSNQEQGT---GD-PGFWGLGGGTSKSKEEQILLVMITPHI 542
>gi|297520545|ref|ZP_06938931.1| general secretion pathway protein D precursor [Escherichia coli
OP50]
Length = 111
Score = 83.6 bits (205), Expect = 6e-14, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
L GL+ D + +PLL IP++G LF+++ +E+ + + P +++ D
Sbjct: 1 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAAD 57
>gi|319428145|gb|ADV56219.1| type II and III secretion system protein [Shewanella putrefaciens
200]
Length = 492
Score = 83.6 bits (205), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/338 (10%), Positives = 107/338 (31%), Gaps = 51/338 (15%)
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
L D Q N+ + +I + + + N+ ++ + + G + T+ R
Sbjct: 188 LFNADQDQFANIKATVSSEIEDAVKVIESMMGEKNVNGQVHPN--IASGTL-TVTTKPRI 244
Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
+ E ++ Q V + V I + ++ G ++
Sbjct: 245 MRDVENYVKQLNAMFG-----------------QMVRIDVQIITFQSNLDNSFGVDWNMV 287
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
++ + +F G+ + K +++AL+ + + P++ AI
Sbjct: 288 RETTKGTLNFTIPSSGETSGLTFASTDKLFNGS---TALVNALKTQGNVSLVTTPSMLAI 344
Query: 281 SGQSASFT------SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT---VLSPGRIGLR 331
+ + + ++ +T + V F+ + + ++
Sbjct: 345 NNRVGEIESLRKEAYVKDITMREATNEDSSTYSEVNQGVVSEGFSMRALVKIDGDEVLMQ 404
Query: 332 IQTEVSEPVIGVN------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE-- 383
+ +S P+ + + +++ +G T++L+G + + +
Sbjct: 405 MSATISRLGNFGTVEMPTITLKTPNMSEDRFNQPLKIQNGRTVILSGYTQSAVTSEQSES 464
Query: 384 -GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
PLL + ++ + TP +++
Sbjct: 465 FRNPLLG----------GNSGKERKSHTLVLVTPRIIR 492
>gi|255022020|ref|ZP_05294026.1| PilN [Acidithiobacillus caldus ATCC 51756]
gi|254968506|gb|EET26062.1| PilN [Acidithiobacillus caldus ATCC 51756]
Length = 544
Score = 83.6 bits (205), Expect = 7e-14, Method: Composition-based stats.
Identities = 50/301 (16%), Positives = 94/301 (31%), Gaps = 35/301 (11%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L + +T+ + V + T + + L + QV + V + V
Sbjct: 251 LSKVAQTVAGGGQVVVDASTGTVTVTGTPPEVRRVRDWVQGLARQLQRQVAITVHVYNVN 310
Query: 207 RDILKQIGFQHSITGSSSG------------PSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
+ + G S S G PS S + + +
Sbjct: 311 LNNEQNYGLNLSGAFQSLGRQYGVTLQGVAPPSVSSGGPAPLSLGANILSSATGALGQWQ 370
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----- 309
+ AL + + + +++G+ Q Y SS+T +V T
Sbjct: 371 GSSIAVQALATLGHVTQVFSRSAISLNGEPTPIQVAQQTGYLAESSNTTTANVGTTSGLI 430
Query: 310 ---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTV 360
G F P ++ GRI L + +S G ++ +P+ +V
Sbjct: 431 PGTVTTGFTAMFLPKIV-DGRILLGMNMTISNLVGIQTISSGGSSIQVPTVDSSTFQQSV 489
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+L G T++L G + G+ P P+LG + + I I T +
Sbjct: 490 KLKPGQTLLLTGYSQSQGSTTHNGVGSPYF---PLLG---GGADASLSRQMIAIVITARI 543
Query: 419 V 419
+
Sbjct: 544 L 544
>gi|54303276|ref|YP_133269.1| hypothetical protein PBPRB1609 [Photobacterium profundum SS9]
gi|46916706|emb|CAG23469.1| Hypothetical protein PBPRB1609 [Photobacterium profundum SS9]
Length = 488
Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats.
Identities = 57/386 (14%), Positives = 101/386 (26%), Gaps = 56/386 (14%)
Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
D+ + + G K+++ L + I L S
Sbjct: 117 VDLHTTRQNILNVLSSQTG----YAFTPSEKKIVVQRYLSKTFIIQLPTGAYSAQQGSQG 172
Query: 137 RVEMVSDTVVLHGMVRTIQDSQR-----AVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
+ + D + G ++ + E + L + + V ++ I
Sbjct: 173 QSKGKDDEAKVEGQFISVTYKDKDVFTEISEAVKVVLKSDDEDGELIGDVQPVPSMSGIT 232
Query: 192 GE---------------------DQVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKS 229
QV + + I E R ++ K G I G K
Sbjct: 233 VRTTPVRMRQVQALIDSYQSELNKQVLIDIRILEFRSNLGKDRGVDWQILKEVGDGTLKF 292
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
+ G + ALE+ + T + +S Q A +
Sbjct: 293 LIPGTTTSSAGNPAGLAFTGTGKWDGTTAFIKALEQQGTVSTETPISFRTLSSQPARISQ 352
Query: 290 GGQHLYKTVSSSTGATSVTTHDY-------GVVLHFTPTVLSPG---RIGLRIQTEVSEP 339
+ S+ + TT GV + + V R ++ S+
Sbjct: 353 TLVTPFLEDFSTVITDNTTTPTTTRGSVTEGVDMTISANVQKGFVWLRTAGKLTKIASDT 412
Query: 340 VIGVNAGDMPSYRVRKADTTVE--LPSGGTIVLAGLLKDDIQQLKE---GIPLLSKIPIL 394
V + R AD L G T+V+ + + K GI L
Sbjct: 413 TEKVADVALRFISTRSADLNFTNKLRYGQTVVIGSIKQQTTGANKSTSFGIDGLG----- 467
Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
N + E I TP V+
Sbjct: 468 -----MQSTNNQTVETLILLTPRRVQ 488
>gi|294784349|ref|ZP_06749640.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
gi|294487921|gb|EFG35276.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
Length = 127
Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------------RKADTTVELPSGGTIVLA 371
I L I E+S+ N ++ R T V + +G TI+L
Sbjct: 19 DNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKVRVKNGDTILLG 78
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
GL K Q ++ IP+L IPI+ F+N+ E ++++I
Sbjct: 79 GLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 119
>gi|87311027|ref|ZP_01093152.1| RhcC2 [Blastopirellula marina DSM 3645]
gi|87286317|gb|EAQ78226.1| RhcC2 [Blastopirellula marina DSM 3645]
Length = 300
Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats.
Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 18/239 (7%)
Query: 149 GMVRTIQDS---QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIA 203
G Q + A E + Q R + + + ++ L QV + V +
Sbjct: 18 GTAPAKQVAPVPAAAEEETLQAEKQLQRLIASRDALTQEIDRLRKRTGQHSQVFVSVQVF 77
Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
E+ Q + + + V G + + D + + V+ L
Sbjct: 78 ELTHRKTPQ--------ANGFAAALAAGGLAEPGPVETGSATVYRVIADDEALKQVVAKL 129
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
E++ A++ LAEPTL +SGQ ASF GG+ + V S+ G+ ++ YG +H P VL
Sbjct: 130 EKSGALKVLAEPTLMTVSGQPASFHVGGEFPIQ-VPSADGSPAIEFKAYGAEMHVVPVVL 188
Query: 324 SPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
GRI L ++ +SE + +P+ RVR DT+VE+ G VLAGL++ +
Sbjct: 189 GQGRIRLGLRPRISELDPDHGIKLGDLTVPALRVRGVDTSVEMHVGDAFVLAGLVQQRV 247
>gi|157164174|ref|YP_001467421.1| hypothetical protein CCC13826_0019 [Campylobacter concisus 13826]
gi|157164249|ref|YP_001467411.1| ABC transporter ATP-binding protein YojI [Campylobacter concisus
13826]
gi|157101403|gb|EAT97210.2| hypothetical protein CCC13826_0019 [Campylobacter concisus 13826]
gi|157101412|gb|EAT97201.2| hypothetical protein CCC13826_1100 [Campylobacter concisus 13826]
Length = 389
Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 81/272 (29%), Gaps = 23/272 (8%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
L TI LK+IG + + S +++ S
Sbjct: 134 QLSFTIISTDNTKLKEIGPRIESLLNPLDHFYFKIITNVLTVDST--------KVNKDSV 185
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTH 310
++++ L+ + P +T I + + S + + S S V
Sbjct: 186 TSLINLLKEKGVSDLIYNPRVTVIDNKDSVIESVIKTPIQKSSIDIQNSQSITTNQVEYQ 245
Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
D G+ L+ + +++ + + + + P R T V L + ++
Sbjct: 246 DVGLKLYISSVLITNDSVSFTLDLYIENLLDDTLT---PRISSRHLKTNVYLTDTNSFLI 302
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
G+ + + + IP + IPILG + + I T + +
Sbjct: 303 GGINSKETIKSTKTIPFIENIPILGDITTYKSEKTSDYSFSIFIT------MLPSEKDIF 356
Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
+ Y D + + + G
Sbjct: 357 SEFYYDPADKHLALERYLTSASRNAKGAPRSG 388
>gi|207722770|ref|YP_002253205.1| type iv pilus biosynthesis protein [Ralstonia solanacearum MolK2]
gi|206587952|emb|CAQ18533.1| putative type iv pilus biosynthesis protein [Ralstonia solanacearum
MolK2]
Length = 563
Score = 82.9 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/287 (18%), Positives = 89/287 (31%), Gaps = 34/287 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
A +++ L + + L+ QV + V I EVR + G
Sbjct: 284 AEVIADPNLGSVTVTGTPPQCDRVEDWVRTLDAMFGKQVAIDVRIYEVRLNQEDNYGLNL 343
Query: 218 SITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272
S+ S +F S SV + + + AL + +
Sbjct: 344 SLGYKSGNGHTGATFTGVAPPTVSSNATPMSVGATIVGGKLDGTKVAVQALSTLGNVTQV 403
Query: 273 AEPTLTAISG-----QSAS---FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ +G QSA+ + Q + ST + G FTP V+
Sbjct: 404 VSRSGVTQNGKVMAMQSATLQDYIPSSQTTLASNVGSTSSMQTAPDISGFTSTFTPKVV- 462
Query: 325 PGRIGLRIQTEVSEPVI-----GVNAGDMPSYRVRK-----ADTTVELPSGGTIVLAGLL 374
GRI + +S + + ++R TV L G ++VL GL
Sbjct: 463 NGRILIMFDMTLSNLNPLQEQTQGSGASLSKVQLRTKPLARFQQTVGLKPGESLVLTGLR 522
Query: 375 KDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G+ P IP+ G + ET I + T L+
Sbjct: 523 DQTTSTTNNGVGSPY---IPVAG---GGVDAAKRETMIAVVITARLL 563
>gi|315929956|gb|EFV09111.1| general secretory pathway protein D domain protein [Campylobacter
jejuni subsp. jejuni 305]
Length = 355
Score = 82.9 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 10/164 (6%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
S K + L + QV + V+I V + G +
Sbjct: 193 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIGLNSQVNNE 252
Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
F +F + G G+ +F+++++ L + L+ P L A++ Q A + G
Sbjct: 253 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 311
Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPG 326
Y+ SS G + TT G++L+ P + G
Sbjct: 312 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDG 355
>gi|160873109|ref|YP_001557114.1| hypothetical protein Sbal195_4700 [Shewanella baltica OS195]
gi|160858631|gb|ABX51854.1| conserved hypothetical protein [Shewanella baltica OS195]
Length = 492
Score = 82.5 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/277 (15%), Positives = 76/277 (27%), Gaps = 28/277 (10%)
Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + + ++N + QV L + I E R + K+ +I
Sbjct: 228 VEAIKSLTAIAVRTTPDRMVNVRNLVNSVQEQFGQQVVLDIRILEFRSNRGKERSLDWNI 287
Query: 220 TGSSSGPSKSF-AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
S F + +G + ALE+ + T T
Sbjct: 288 IKDVGNGSLEFMIPGTTTVSQGASYGMAFRGTGKWDGTAAFIRALEQQGTVSTETPITAL 347
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------GVVLHFTPTVLSPG---RI 328
+S + A Y S V T GV + TP V+ I
Sbjct: 348 GLSNRPARIAQTMTTPYIDEIKSESNDKVITASVTRASQSEGVDMMITPKVMDDAVWLSI 407
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE--LPSGGTIVLAGLLKDDIQ---QLKE 383
++ V + V+ + R+++ L G T+V+ + +
Sbjct: 408 AGKLTKIVGKRNETVHDVQLLFLDTRESEINFTNKLLYGQTVVIGSIKQTSTTAESNSNF 467
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G+P E + TP V+
Sbjct: 468 GVP------------SGEGTLSNTVETLVLLTPRKVQ 492
>gi|330890299|gb|EGH22960.1| general secretion pathway protein D [Pseudomonas syringae pv. mori
str. 301020]
Length = 123
Score = 82.1 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G +VL GLL+D Q E +P LS+IP+LG LFRN + +T + + P++++
Sbjct: 1 GQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 56
>gi|327413080|emb|CAX68109.1| putative pilus assembly protein [Salmonella enterica subsp.
enterica]
Length = 562
Score = 82.1 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/249 (16%), Positives = 78/249 (31%), Gaps = 29/249 (11%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGGKFVSEGGDFSVKGV 250
Q+ L V I V + +++G + S + G S + + + G +
Sbjct: 317 RQIQLDVKIMSVTQTRNEELGLDWDLVYSSLRNYGVSVKGSFNNASSGAASGAYSILDTA 376
Query: 251 LDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
++ AL + + + + + Q SSST +
Sbjct: 377 TGSARHFAGSNLIMKALSEQGDVSVVTSQSRATTNLTPVPYQLSNQQGILVSSSSTPTAN 436
Query: 307 V--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--------VIGVNAGDMPS 350
V + G+ + P + G + L+ P G D P+
Sbjct: 437 VGVTSTMSTSMLTTGLFMTAVPYIEENGNVQLQFAFSYDSPPKIESFFSADGNTRNDTPN 496
Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETE 409
Y V + +G T++L G + + ++G + LF + + T
Sbjct: 497 YSREAFTQKVNMKAGQTLMLTGSDQLSVSADRQGT-GSAD----NFLFGGGRKGTNKRTT 551
Query: 410 IFIAATPFL 418
+ I TP L
Sbjct: 552 LIILITPIL 560
>gi|213418601|ref|ZP_03351667.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 138
Score = 81.7 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRK 355
+ + G +L TP +L+ +I L + + + + +P + +
Sbjct: 8 QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSE 67
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+ L +G +++L G + + IPLL IP++G LFRN
Sbjct: 68 IASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIK 127
Query: 416 PFLV 419
+V
Sbjct: 128 ASVV 131
>gi|297519324|ref|ZP_06937710.1| general secretion pathway protein D precursor [Escherichia coli
OP50]
Length = 136
Score = 81.3 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKT 297
G + + + ++ A++ ++ L+ P++T + Q A F G
Sbjct: 1 GFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDVPVLTGSTVG 60
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
++S +V G++L TP + + + I+ EVS+ + + + RK
Sbjct: 61 SNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLK 118
Query: 358 TTVELPSGGTIVLAGLLK 375
TTV G IVL GL+
Sbjct: 119 TTVLANDGELIVLGGLMD 136
>gi|187930905|ref|YP_001901391.1| PilN [Ralstonia pickettii 12J]
gi|187728949|gb|ACD30112.1| PilN [Ralstonia pickettii 12J]
Length = 561
Score = 81.3 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 52/289 (17%), Positives = 95/289 (32%), Gaps = 34/289 (11%)
Query: 158 QRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
A +++ L ++ + L+ Q+ + V I EVR G
Sbjct: 280 ADATVVADKHLGSVTVTATPPQCDRLEEWVKGLDAMFGKQIGIDVKIYEVRLSQEDNYGL 339
Query: 216 QHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIR 270
S+ S +F S + + + L AL +
Sbjct: 340 NLSLAYKSGNGHTGATFTGAGVPSVTSTASPMTFGATIVGGKLDGTKAALQALSTLGNVS 399
Query: 271 TLAEPTLTAISG-----QSASFT---SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
+ + +G Q A+ G Q + ST A +T+ G +F P V
Sbjct: 400 RVLQRGGVTQNGKVLALQDATLQDFVQGTQTTLASNVGSTTAIQTSTNISGFTGNFRPKV 459
Query: 323 LSPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
+ GRI + +SE + + + + + + +V L G T+VL G
Sbjct: 460 I-NGRIMMVFDMTISELQPLQTFTSGSSASQSTVQLRTMPLARFEQSVGLRPGETLVLTG 518
Query: 373 LLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ + GI P +P+LG +++T I + T L+
Sbjct: 519 MREQSTSTTNNGIGSPY---MPLLG---GGVDAQKKDTMIAVVITARLL 561
>gi|241258202|ref|YP_002978468.1| type IV secretion pathway protein [Ralstonia pickettii 12D]
gi|309783222|ref|ZP_07677935.1| R64 PilN family type IVB pilus formation outer membrane protein
[Ralstonia sp. 5_7_47FAA]
gi|240869002|gb|ACS66659.1| type IV secretion pathway protein [Ralstonia pickettii 12D]
gi|308917966|gb|EFP63650.1| R64 PilN family type IVB pilus formation outer membrane protein
[Ralstonia sp. 5_7_47FAA]
Length = 561
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 52/289 (17%), Positives = 95/289 (32%), Gaps = 34/289 (11%)
Query: 158 QRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
A +++ L ++ + L+ Q+ + V I EVR G
Sbjct: 280 ADATVVADKHLGSVTVTATPPQCDRLEEWVKGLDAMFGKQIGIDVKIYEVRLSQEDNYGL 339
Query: 216 QHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIR 270
S+ S +F S + + + L AL +
Sbjct: 340 NLSLAYKSGNGHTGATFTGAGVPSVTSTASPMTFGATIVGGKLDGTKAALQALSTLGNVS 399
Query: 271 TLAEPTLTAISG-----QSASFT---SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
+ + +G Q A+ G Q + ST A +T+ G +F P V
Sbjct: 400 RVLQRGGVTQNGKVLALQDATLQDFVQGTQTTLASNVGSTTAIQTSTNISGFTGNFRPKV 459
Query: 323 LSPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
+ GRI + +SE + + + + + + +V L G T+VL G
Sbjct: 460 I-NGRIMMVFDMTISELQPLQTFTSGSSASQSTVQLRTMPLARFEQSVGLRPGETLVLTG 518
Query: 373 LLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+ + GI P +P+LG +++T I + T L+
Sbjct: 519 MREQSTSTTNNGIGSPY---MPLLG---GGVDAQKKDTMIAVVITARLL 561
>gi|254252520|ref|ZP_04945838.1| type II and III secretion system protein [Burkholderia dolosa
AUO158]
gi|124895129|gb|EAY69009.1| type II and III secretion system protein [Burkholderia dolosa
AUO158]
Length = 200
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 9/141 (6%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100
G I + + + +Q V V DP ADV++ + L K G NV+
Sbjct: 21 AGASGTIELAVGAQRQISAGRALQRVAVGDPAVADVLIMKGSRSGSVLLVAKAPGATNVM 80
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
L + ++ + ++ + + S RV T VL G ++ +RA
Sbjct: 81 LWERGRDEPTVWNVEV------VDAAAQAVLDGSTPRVNAYGGTAVLRGTAASLDAHERA 134
Query: 161 VELSETFLSQSGRNQYANSSS 181
+++ ++ + +
Sbjct: 135 AAVAKNTAAKGAIVDRSTVAD 155
>gi|281356794|ref|ZP_06243285.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
gi|281316921|gb|EFB00944.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
Length = 554
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 52/290 (17%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
Y+ + ++++ ++ + + +K+ + E+ + ++G ++ G
Sbjct: 220 TANYSRKNIEEMLRKYDVPLPE-IKIKLNVYELYSENDDKLGVDFQAWKNNEGTDFFSVG 278
Query: 233 D----------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
G +G + + + L L + +T
Sbjct: 279 GRFRDNWAATYGGTMARPQGSERTSFYNFNPKWNTRYLDFLTSKGKAKIAYSGEVTVRQN 338
Query: 283 QSASFTSGGQHLYKT--------------------------------------VSSSTGA 304
+++ + Q Y +
Sbjct: 339 TTSTLSRTTQIFYTDTTVPPDDTQETIDNWFTRPLDNALQALGRESPGNDIRIGKDNQQN 398
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-RKADTTVELP 363
+ +G ++ ++P L+I + S IG + P + +V +
Sbjct: 399 VTRAPQSFGFIMTVKAGSIAPEAAILQISLDNSSL-IGYQSSGAPRIQKGNTIRNSVMIS 457
Query: 364 SGGT-IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
+ V+ GL K ++ + G+P L IP LG LF+ + ++++ +
Sbjct: 458 TKRNEFVIGGLEKREVVRGSTGVPYLKDIPGLGYLFQVESESTRKSQLVV 507
>gi|187928617|ref|YP_001899104.1| PilN [Ralstonia pickettii 12J]
gi|241114194|ref|YP_002973669.1| type IV secretion pathway protein [Ralstonia pickettii 12D]
gi|187725507|gb|ACD26672.1| PilN [Ralstonia pickettii 12J]
gi|240868767|gb|ACS66425.1| type IV secretion pathway protein [Ralstonia pickettii 12D]
Length = 563
Score = 80.2 bits (196), Expect = 7e-13, Method: Composition-based stats.
Identities = 53/287 (18%), Positives = 89/287 (31%), Gaps = 34/287 (11%)
Query: 160 AVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
A +++ L + + L+ QV + V I EVR + G
Sbjct: 284 AEVIADPNLGTVTVTGTPPQCDRVEDWVRTLDAMFGKQVAIDVRIYEVRLNQEDNYGLNL 343
Query: 218 SITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272
S+ S +F S SV + + + AL + +
Sbjct: 344 SLGYKSGNGHTGATFTGVAPPTVSSNATPMSVGATIVGGKLDGTKVAVQALSTLGNVTQV 403
Query: 273 AEPTLTAISG-----QSAS---FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
+ +G QSA+ + Q + ST + G FTP V+
Sbjct: 404 VSRSGVTQNGKVMAMQSATLQDYIPSSQTTLASNVGSTSSMQTAPDISGFTSTFTPKVV- 462
Query: 325 PGRIGLRIQTEVSEPVI-----GVNAGDMPSYRVRK-----ADTTVELPSGGTIVLAGLL 374
GRI + +S + + ++R TV L G ++VL GL
Sbjct: 463 NGRILIMFDMTLSNLNPLQEQTQGSGASLSKVQLRTKPLARFQQTVGLKPGESLVLTGLR 522
Query: 375 KDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G+ P +P+ G + ET I + T L+
Sbjct: 523 DQTTSTTNNGVGSPY---VPVTG---GGVDAAKRETMIAVVITARLL 563
>gi|150021136|ref|YP_001306490.1| secretin/TonB, short N-terminal domain [Thermosipho melanesiensis
BI429]
gi|149793657|gb|ABR31105.1| Secretin/TonB, short N-terminal domain [Thermosipho melanesiensis
BI429]
Length = 369
Score = 80.2 bits (196), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 26/205 (12%)
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
+K+ + E+ + L++ G + S ++ S+ + + L +
Sbjct: 166 IKIKLYEIDEEDLRKFGVEFSSNDETTTLKVSYNNN----------ALQLSLDLMDTNLF 215
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--TTHDYGVV 315
++ AL + + L T+ + +SA ++ + + + G V
Sbjct: 216 AIISALISSGKAKILTNGTIFLKANESAKISAYTTIDFTLSNDKVIEKKLLNEIEISGTV 275
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
+ L + + +++L +AGL
Sbjct: 276 FV--------DHVSLNLTARAEALSPSNKTIGL------TFSNSLDLKYNKHYYIAGLSF 321
Query: 376 DDIQQLKEGIPLLSKIPILGALFRN 400
+ ++ GIP L +PI+G LF+
Sbjct: 322 ETTNNIESGIPGLKDLPIIGNLFKT 346
>gi|332308903|ref|YP_004436753.1| hypothetical protein Glaag_4580 [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332176232|gb|AEE25485.1| hypothetical protein Glaag_4580 [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 506
Score = 79.8 bits (195), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/254 (13%), Positives = 75/254 (29%), Gaps = 27/254 (10%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEG 242
+ N QV + I + + ++ + + + S DF G V
Sbjct: 259 IQAENRKATAQVYFDIKIVDYQDEVGSEYSLNWDVVSKNLSAEGVVSLTNDFSGSLVDGT 318
Query: 243 GDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+ AL+ + + EP +T + + +G Y S
Sbjct: 319 AAVLGYSKESGKYAGSSAFISALDNQGVVYNVIEPKITLRNNRIGKVINGADTTYLASSG 378
Query: 301 STGATSVTT-------HDYGVVLHFTPTVLSPGRIGL-------RIQTEVSEPVIGVNAG 346
S T+ +T G+ L+ + + ++
Sbjct: 379 SASTTTSSTGILIPGIVSTGLNLYAVANINLDDMSVIGAIANKYASLVDIGSVTSDDATI 438
Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
P ++ + G TI+L+GL + + + + LF ++ + +
Sbjct: 439 QTPETTRKEFHQEFFVRDGETILLSGL-RSRLSEYNSSVAGSM-------LFGGTKGSAD 490
Query: 407 E-TEIFIAATPFLV 419
T I TP ++
Sbjct: 491 TYTNTVILLTPRII 504
>gi|283851709|ref|ZP_06368987.1| type IVB pilus formation outer membrane protein [Desulfovibrio sp.
FW1012B]
gi|283572829|gb|EFC20811.1| type IVB pilus formation outer membrane protein [Desulfovibrio sp.
FW1012B]
Length = 468
Score = 79.4 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/269 (16%), Positives = 82/269 (30%), Gaps = 28/269 (10%)
Query: 163 LSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
+ + S + S ++V + LN+ QV L V + + + G
Sbjct: 206 VVSNQSAGSMTVRDTPDSVRRVATYVEDLNVRLSRQVALNVQVWSLNVTDNAEAGINLQA 265
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
S + + + ++ + G L + VL AL + +
Sbjct: 266 LFQDSNLTVAAGSLSEVGAINTATATILSGKLKDSA--GVLKALGQWGKASQVTSAGGLV 323
Query: 280 ISGQSASFTSGGQHLY-------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+SGQ + +H Y T S T + G + P +L R+ L+
Sbjct: 324 MSGQPVPVMAVQRHAYLAGVGKSTTDYSQTTEVTPGEVTTGFAMTVIPHILDQRRVILQY 383
Query: 333 QTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
+S E ++P + + G T+VL G K+ K
Sbjct: 384 NLNLSSLDEMKEFTTSDVTIELPQVSTQAFSQRSTMKLGQTLVLCGFEKESNSNKKT--- 440
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAAT 415
LG + + + T + I
Sbjct: 441 -------LGFINASRASDYGRTLLVITIR 462
>gi|213618889|ref|ZP_03372715.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 392
Score = 79.4 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/213 (13%), Positives = 70/213 (32%), Gaps = 18/213 (8%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 193 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 244
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 245 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 300
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
+P++ ++ A K + + G +L TP +L+ +I L
Sbjct: 301 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 358
Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362
+ + + + +P + + + L
Sbjct: 359 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATL 391
>gi|238898455|ref|YP_002924136.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229466214|gb|ACQ67988.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 546
Score = 79.4 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/254 (15%), Positives = 86/254 (33%), Gaps = 15/254 (5%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
L G V+++ R + ++ ++ N QV L + + V
Sbjct: 259 LQGAVKSMLTPGRGRLFLSAGNLTVTDVPRVLDTVERFVDERNQTLNRQVVLNIEVLSVE 318
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
Q+G + ++S S + FGG + + L AL
Sbjct: 319 ARQKDQLGLDWNAVFNNSRWGLSLSQAFGGVSGNIMQGGFSVVDGRLAGSKVFLKALAEQ 378
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318
+ + + + T + + Q Y ++ +V T G ++
Sbjct: 379 AKVSVVTQQSSTTTNLSPVAMQVAEQEDYVAQVTTQATANVGTATSIQPATITTGFYINL 438
Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
P +L G+ I L G ++ ++ + +++ V++ +G T+VL+
Sbjct: 439 LPNILPDGQHLLLQFAINLSDPPTRRTFTSGESSVELLNTQLKTFTQRVKMKTGQTLVLS 498
Query: 372 GLLKDDIQQLKEGI 385
G + + K+G+
Sbjct: 499 GFQQASRKGSKQGV 512
>gi|281356728|ref|ZP_06243219.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
gi|281316855|gb|EFB00878.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
Length = 627
Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 5/137 (3%)
Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
Y + ++G L TP V + +I + + + ++G P
Sbjct: 456 YSYIIRKDKKRVTKQAEFGFTLELTPEVNTEASQIKVAMS---NTNLLGFKGNGEPRTSE 512
Query: 354 RKADTTVEL-PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
+T++++ GG + GL K + + +P L IP LG +F + ++T+I
Sbjct: 513 TVLNTSLQMANDGGVFYIGGLEKSALVRSVSKVPFLGDIPFLGWVFAGESESVKKTQIVA 572
Query: 413 AATPFLVKPVAMRDLSR 429
T V P D
Sbjct: 573 VLTVVPVTPDTPVDARL 589
>gi|330951303|gb|EGH51563.1| type II and III secretion system protein:NolW-like protein
[Pseudomonas syringae Cit 7]
Length = 584
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 23/160 (14%)
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAA 232
++++ L+I QV ++ I E D KQ+G + + ++SG A
Sbjct: 427 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAG 485
Query: 233 DFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
+ G S + V + + L A+E+ +++P +
Sbjct: 486 NTGSSTTSNVPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 545
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
++A G + Y+ SS+GAT+V+ + + L TP
Sbjct: 546 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQ 584
>gi|124514594|gb|EAY56106.1| probable type IV pilus biosynthesis protein [Leptospirillum
rubarum]
Length = 610
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/291 (15%), Positives = 86/291 (29%), Gaps = 23/291 (7%)
Query: 147 LHGMVRTIQDSQRAVELSETF-LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
+ V++I SQ ++++ + + +N + V LKV + +V
Sbjct: 322 ISQSVKSILGSQGNFSIAQSAGTITVTTTPRIMGEVARYVREINDSLSRHVWLKVEVLDV 381
Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---VLDRFSFETVLHA 262
+ F + S S A S G + L S V+HA
Sbjct: 382 SLENQNTNSFNLTAALHGLMKSGSLAVTGQPGVFSLAGATPITTSTLTLPSSSTNAVIHA 441
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---------VSSSTGATSVTTHDYG 313
L + + +T ++ Q+ + Y S+ T G
Sbjct: 442 LSTQGKVSVVTRSFVTTLNDQAVPVQNVQNIGYLMENLAGIAGIGQSTFTQNIPGTVTVG 501
Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ P +L + L + + + + +P+ R V+L SG T
Sbjct: 502 FTMTLVPHLLDDKEMLLGVSIDDTNLNQMQTLQSNGGSIQLPNTSQRSFMQWVKLTSGET 561
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V+ G + + G P + I I TP +
Sbjct: 562 AVIGGYEQTRRVFQQNGT----GTPSNFWMGGGQNAETVRDAIVILVTPVV 608
>gi|188591492|ref|YP_001796091.1| type IV secretion pathway, outer membrane lipoprotein, putative
precursor (pilN homolog) [Cupriavidus taiwanensis]
gi|170938887|emb|CAP63888.1| type IV secretion pathway, outer membrane lipoprotein, putative
precursor (pilN homolog) [Cupriavidus taiwanensis LMG
19424]
Length = 556
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/298 (17%), Positives = 98/298 (32%), Gaps = 36/298 (12%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKV--------MNLLNIAGEDQVTLKVTIAE 204
T+Q + +AV + + + V + L QV + V + E
Sbjct: 264 TLQATAKAVAGASAEVVVDKNLGTLTVTGDPVQCDRIEQFVKSLAAMYGKQVAIDVQVYE 323
Query: 205 VRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSF---ETV 259
VR G S+ SS +F++ ++ + F + V
Sbjct: 324 VRVTREDNYGLNLSLAYQSSAGQTGVAFSSVSTPTISGSATPMNLGATIMSGPFAGSKAV 383
Query: 260 LHALERATAIRTLAEPTLTAISG-----QSAS---FTSGGQHLYKTVSSSTGATSVTTHD 311
+ AL + + + +G Q+A+ + + Q ST + T
Sbjct: 384 VQALSTLGNVSQVVSRSGVTQNGKVLALQTATLQDYVAQSQTTLAANVGSTSSIQTGTVT 443
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSYRVRKADTTVE 361
YG +F P V+ GRI + +S+ + + + + ++
Sbjct: 444 YGFTSNFLPKVV-DGRILMNFDMTLSDLLPLQRFNSGGDANQTSVQLRTMPTNRFTQSIT 502
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G ++VL GL G+ + P + AL + +T I I + L+
Sbjct: 503 LKPGESLVLTGLRNQKASTTNNGV---GE-PWMAALGGGVGALKGDTVIAIMISARLL 556
>gi|296100785|ref|YP_003610931.1| type IV pilus formation outer membrane protein [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295055244|gb|ADF59982.1| type IV pilus formation outer membrane protein [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 557
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/251 (18%), Positives = 76/251 (30%), Gaps = 27/251 (10%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV L + I V + +Q+G + S + S + +
Sbjct: 311 SRQVQLNIQIVSVNQTRNEQMGLDWGLVYKSLQNVGASLTGSMANASSSAASAGISILDT 370
Query: 253 RFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
++HAL + T + ++ T SSST
Sbjct: 371 ASGNAAKFSGSSLLIHALSEQGNVSMALNQTDPTANLTPVAYQLSKSTGMLTSSSSTATA 430
Query: 306 SV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--------IGVNAGDMP 349
+V T G+ + P + G + L+ + P G D
Sbjct: 431 NVGVTSTMTTTNVTTGLFMTMLPFIQENGDVQLQFAFSYTSPPDIKSFVSRDGNTRNDTA 490
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
V L SG T+VL G + ++ K+G ILG +R T
Sbjct: 491 DTSTEGLARKVNLRSGQTLVLTGSEQQNVSADKQGTFTPGNF-ILG---GGQTGSRGRTT 546
Query: 410 IFIAATPFLVK 420
+ I TP L++
Sbjct: 547 LVIMITPVLLR 557
>gi|293386468|ref|YP_003540630.1| conjugal transfer protein [Erwinia amylovora ATCC 49946]
gi|291201111|emb|CBJ48249.1| conjugal transfer protein [Erwinia amylovora ATCC 49946]
Length = 569
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/252 (19%), Positives = 81/252 (32%), Gaps = 31/252 (12%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV LKV I V + IG ++ + V++ G S +
Sbjct: 322 SRQVNLKVVIYTVNSETSDAIGIDWNVIYKTLAGKYGINLAGPSGTVADAGSLSFSVLDT 381
Query: 253 RFS-------FETVLHALERATA-IRTLAEPTLTAIS--------GQSASFTSGGQHLYK 296
+ AL + P +T Q A S +Y
Sbjct: 382 ATGAARQFAGSSFLFEALSKQAKVADVRTIPLMTTNMASASVVVGRQIAYLKSVSTTVYS 441
Query: 297 TVSSSTGATSVTT--HDYGVVLHFTPTVLSPG-RIGLRIQTEVS------EPVIGVNAGD 347
T S++ + ++T G + P +L G R+ L + +S E +
Sbjct: 442 TGSTTLPSQTLTPGSVTTGTNITIFPKILDGGDRMMLNMFLNISSLIQLREISSDTEKLE 501
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS-KIPILGALFRNSRFNRE 406
P R V L G T+V++GL ++ ++G LS I G ++
Sbjct: 502 APEVDSRSVPQRVWLKPGQTVVISGLEQNVATSNRQG--QLSPDNQITG---GQRSGDKT 556
Query: 407 ETEIFIAATPFL 418
I TP++
Sbjct: 557 RQSFVITVTPYI 568
>gi|331660223|ref|ZP_08361158.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli TA206]
gi|331052490|gb|EGI24526.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Escherichia coli TA206]
Length = 548
Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/292 (16%), Positives = 93/292 (31%), Gaps = 27/292 (9%)
Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEV 205
+ V + ++ + L+ + + + + + + N + QV LKV + +
Sbjct: 262 IKATVSAMLSAEGSSWLAPGSATLTVTDTPEVLNRIGEYIERQNAILDRQVKLKVDVYRI 321
Query: 206 RRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
KQIG + S + G + + FG E ++ AL
Sbjct: 322 TFRDTKQIGIDWTAVYSAARGMGYTLTSAFGDAASDVATIGVTSSSGRLSGSEVLIKALN 381
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-------THDYGVVLH 317
+ I + + A + Y +S+T + S + T G+ +
Sbjct: 382 QQANISSATTTNTVTTNMVPAPLQIAKETTYLAKTSTTTSDSYSSTELEPGTITTGLFMT 441
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIV 369
P + G I L++ +S+ G + P+ VR L G T+V
Sbjct: 442 VLPYIRDNGTIQLQMSFSLSDDPTITTVSAKDGSTSIQTPTTDVRSLTQRANLKPGQTLV 501
Query: 370 LAG---LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L G L + +Q R+ + + + TP L
Sbjct: 502 LNGFQSLYNEANRQGTTSKSWFG-------FGGGESAERDRSMLLVLVTPVL 546
>gi|38638012|ref|NP_942986.1| putative component of type II secretion apparatus [Ralstonia
eutropha H16]
gi|32527350|gb|AAP86100.1| putative component of type II secretion apparatus [Ralstonia
eutropha H16]
Length = 552
Score = 77.9 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 52/298 (17%), Positives = 98/298 (32%), Gaps = 36/298 (12%)
Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKV--------MNLLNIAGEDQVTLKVTIAE 204
T+Q + +AV + + + V + L QV + V + E
Sbjct: 260 TLQATAKAVAGASADVVVDKNLGTLTVTGDPVQCDRIEQFVKSLVAMYGKQVAIDVQVYE 319
Query: 205 VRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSF---ETV 259
VR G S+ SS SF++ ++ + F + V
Sbjct: 320 VRVTREDNFGLNLSLAYQSSSGKPDVSFSSVSTPTISGSATAMNLGATIMSGPFAGSKAV 379
Query: 260 LHALERATAIRTLAEPTLTAISG-----QSAS---FTSGGQHLYKTVSSSTGATSVTTHD 311
+ AL + + + +G Q+A+ + + Q ST + T
Sbjct: 380 VQALSTLGNVSQVVSRSGVTQNGKVLALQTATLQDYVAQSQTTLAANVGSTSSIQTGTVT 439
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSYRVRKADTTVE 361
YG +F P V+ GRI + +S+ + + + + ++
Sbjct: 440 YGFTSNFLPKVV-DGRILMNFDMTLSDLLPLQRFNSGGDANQTSVQLRTMPTNRFTQSIT 498
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L G ++VL GL G+ + P + AL + +T I I + L+
Sbjct: 499 LKPGESLVLTGLRNQKASTTNNGV---GE-PWMAALGGGVGALKGDTVIAIMISARLL 552
>gi|238899395|ref|YP_002925078.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229467157|gb|ACQ68930.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 560
Score = 77.5 bits (189), Expect = 5e-12, Method: Composition-based stats.
Identities = 45/260 (17%), Positives = 85/260 (32%), Gaps = 41/260 (15%)
Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGGD 244
NI QV LKV + V + Q G ++ S G + A + G + G +
Sbjct: 307 NIKLSKQVLLKVVVYTVHTETADQSGIDWNVIFKSLSGKYGIHVANAFNAGSNLANGGFE 366
Query: 245 FSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ + +L AL + + ++ + +A G Q Y +S
Sbjct: 367 ILPTATGRASQWAGSQFLLKALSEQVKVSDVKTLSIMTTNLATAGMQIGKQTTYLRKTSV 426
Query: 302 TGATSVT-----------THDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPV--------I 341
T + T G ++ P +L ++ L + ++S
Sbjct: 427 TTGNTTTGAEPVQSLEPGEITTGTNINIMPKILEGNDKMMLTMMMDISSLNRLRRIENRN 486
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA----L 397
+ + P R V L G T++++G ++ + G+ G+ L
Sbjct: 487 KTESIEAPDTDSRSIPQRVWLKPGETVLMSGFEQNIQDGSQRGV---------GSSRHFL 537
Query: 398 FRNSRFNREETE-IFIAATP 416
F + + E I TP
Sbjct: 538 FGGGMSGKSKKESFVITITP 557
>gi|320107685|ref|YP_004183275.1| type II and III secretion system protein [Terriglobus saanensis
SP1PR4]
gi|319926206|gb|ADV83281.1| type II and III secretion system protein [Terriglobus saanensis
SP1PR4]
Length = 617
Score = 77.1 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 56/405 (13%), Positives = 126/405 (31%), Gaps = 92/405 (22%)
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
+ +T+ + G N + ++M++L L + + +R V
Sbjct: 223 AIPLDEKTILVAEDTPG--NRERLERQMEEMVSLPGLTTEQLNDIGNIVRNIFDVKQATV 280
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ + T+VL + R +E I G +V L
Sbjct: 281 QPHAGTLVLRASAEKLNAINRTLE-------------------------DLIDGGSEVLL 315
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
++ + V ++ + G + ++ P+ + ++ + + S
Sbjct: 316 RLRLYSVSKNKSQDTGLTPPQSLTAFSPAGAASSLISANQTLADQIVASGALGTNPSQIA 375
Query: 259 VLHALERATAIR-----------------TLAEPTLTAIS-------------------- 281
+ AL + L+ ++
Sbjct: 376 IALALIASGVSSNLLTGSFLKVGGGLSTVILSTANSPTLNLTLSSSDSRSLDDVQLRLSD 435
Query: 282 GQSASFTSGGQHLYKTVSSSTGA--------------------------TSVTTHDYGVV 315
++ +F SG + T + S+G + D G+
Sbjct: 436 RETGTFRSGSRFPIVTSTYSSGISTAAGSSTAAALLSQFLGSSASSVVVPQIQYEDLGLT 495
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
L TP + G + + ++ ++ D+P + + + L +G T ++ GLL
Sbjct: 496 LKATPHMQRSGDVSVHLELKIEALSGQAQ-NDIPILANQLVTSDLTLRAGETAMIMGLLT 554
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
+ GIP LS +P ++ N+ E+ E+ + TP +V+
Sbjct: 555 RSQSKAISGIPGLSDLPGFQSITDNTGNKMED-EMVLLLTPVVVR 598
>gi|281355620|ref|ZP_06242114.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
gi|281318500|gb|EFB02520.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
Length = 496
Score = 77.1 bits (188), Expect = 6e-12, Method: Composition-based stats.
Identities = 62/321 (19%), Positives = 98/321 (30%), Gaps = 60/321 (18%)
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
A +ET + + + + L+ QV L++ EVR L+ IG +
Sbjct: 160 AAYLNAETNTIYWKDDVASAKAILAWVQRLD-RPVPQVNLRLNYYEVRESKLRDIGVDYL 218
Query: 219 ITGSSSGPSKSFAADFGGKFVSE--------------------GGDFSVKGVLDRFSFET 258
+ G + A GK S +S G F+
Sbjct: 219 AWKNGPGLNLFAAGYDAGKVFSNEAVLQLLGGAKQFADLAKNFSTSWSYGGFFTAPQFDL 278
Query: 259 -VLHALERATAIRTLAEPTLT------------AISGQSASFTSGGQHLYKTVSSSTGAT 305
+ L+++ R ++ LT A T Q+L K T
Sbjct: 279 SFVRLLQQSGNARLVSNADLTFLNTPLYGDGRDVTRTYYAELTPSYQNLKKDDDDRTDVV 338
Query: 306 SVTTHDYGVVLHFT-------------------------PTVLSPGRIGLRIQTEVSEPV 340
+ V L T G + V+ V
Sbjct: 339 ADQAETPAVALKITNPVICFGAQTGEVDSVGMVPATGDFYENNRTGGVIFSYNLGVNSVV 398
Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
N GD S R D + L +L +K+ + GIP LS+IP+L LF
Sbjct: 399 ERNNRGDELSNYAR-IDGALTLGFKQEKLLGSYVKETDVEQTIGIPFLSRIPVLKYLFGT 457
Query: 401 SRFNREETEIFIAATPFLVKP 421
+ +E++ I + A LV P
Sbjct: 458 TTTLKEKSYIIVTAEARLVHP 478
>gi|134287991|ref|YP_001110155.1| type IVB pilus formation outer membrane protein [Burkholderia
vietnamiensis G4]
gi|134132641|gb|ABO60267.1| type IVB pilus formation outer membrane protein, R64 PilN family
[Burkholderia vietnamiensis G4]
Length = 563
Score = 77.1 bits (188), Expect = 6e-12, Method: Composition-based stats.
Identities = 43/260 (16%), Positives = 75/260 (28%), Gaps = 34/260 (13%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---FAADFGGKF 238
KK ++ N V V + V G + + A F
Sbjct: 309 KKYIDYQNKRLSKFVQFNVKVYSVTLSNNDSAGVNWNALYQTVTGKYGIKLSGAAFSAPA 368
Query: 239 VSEGGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAIS--------GQSASFT 288
+ FSV E V+ AL L ++ G +
Sbjct: 369 AAVSAGFSVLKSSGSPWSGTEAVVSALNEQGKANLERSQALPTLNFQAVATQVGTQTGYV 428
Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------G 342
+G Q S+ + + T + G L P V I ++ +S G
Sbjct: 429 AGTQTTQTAQVGSSTSIQMGTINVGFNLSLFPYVQDNNDILVQFNLNLSNLDSIRKVNIG 488
Query: 343 VNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-----A 396
++ + P+ + V + G T++L G+ ++D + G G A
Sbjct: 489 DSSAEAPNINLPLNTVQKVRIRPGDTLMLTGINQNDDSSNRTGT---------GMHWNWA 539
Query: 397 LFRNSRFNREETEIFIAATP 416
L T + + TP
Sbjct: 540 LGGGVNAQSNRTMLVVLITP 559
>gi|221235980|ref|YP_002518417.1| CpaC-like secretion pathway protein [Caulobacter crescentus NA1000]
gi|220965153|gb|ACL96509.1| CpaC-related secretion pathway protein [Caulobacter crescentus
NA1000]
Length = 143
Score = 76.7 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
++R + ++ + A+ PI+ ++ + + + + +
Sbjct: 1 MRRLSLAIAAVATLCGAAAGAQTLPIEP-----VSAKTSGAAVSVDLPVSAGQASYVSLA 55
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
V+D++V DP+ ADV V + RT+ + GK G +++ G +G+ + + +++ +
Sbjct: 56 GSVRDIVVGDPSIADVSVVNDRTLVVLGKRPGVTSLLAFGANGRPLADRQVVVSENGGG 114
>gi|255624862|ref|XP_002540535.1| conserved hypothetical protein [Ricinus communis]
gi|223495099|gb|EEF21848.1| conserved hypothetical protein [Ricinus communis]
Length = 150
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
A E K ++++ + K ++++P VQ V +P ++ +P
Sbjct: 41 PTGAAPLRAEAGPNCKGEAAKPAQLALQVGKSSLMRLPEPVQHRSVGNPLVVQALMVAPD 100
Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
T+Y+ G +VG N+I+ G G LDI + D + L+ L + D
Sbjct: 101 TLYIAGVDVGTTNMIIQGKSGLC-SVLDITVAMDPSALQAMLATAMPDE 148
>gi|290243112|ref|YP_003494782.1| type II and III secretion system protein [Thioalkalivibrio sp.
K90mix]
gi|288945617|gb|ADC73315.1| type II and III secretion system protein [Thioalkalivibrio sp.
K90mix]
Length = 551
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 55/292 (18%), Positives = 93/292 (31%), Gaps = 28/292 (9%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI--AEVR 206
G + + + + + + T + + S ++ +N QV++ V I E
Sbjct: 259 GTMVSSRGAFSVSDTTGTITVRDVPDVVDRVSD--YVDNMNDTFSRQVSVDVQIYRVEAT 316
Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETVLH 261
+ L+ + + ++ S VS GG + + E +
Sbjct: 317 ENELRGVNWNALFNNNNMEFEVSSPGGNASGDVSPGGVRLSVPDGAGTLSNLVGSEGFIA 376
Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--------DYG 313
+LE + + TL ++ Q A G Y S T +V + D G
Sbjct: 377 SLEEIGDVSEVTSTTLQTVNNQPAPVRIGQTVSYLEEVSQTDTANVGSQASLTPGEVDVG 436
Query: 314 VVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
+ P V GR I L + E G +P R L SG
Sbjct: 437 FSMQLLPHVQDNGRDMLMQVMITLSTLDRLEEFSSGDQTIQLPEVSSRDFVQRTWLQSGE 496
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+VLAG + GI + + LG N R + I TP +
Sbjct: 497 ALVLAGFESIQANLARSGI-IDADKWALG---GNRRAENTRESLIIVMTPTV 544
>gi|218195539|gb|EEC77966.1| hypothetical protein OsI_17332 [Oryza sativa Indica Group]
Length = 1496
Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 49/180 (27%), Gaps = 37/180 (20%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
V++ L+ QV ++ I EV + + Q G Q S G
Sbjct: 231 VIDQLD-GRRAQVLVESLIVEVAANKVAQFGIQWQGVMGSYGNGTIGVIGTNSSQGGGAN 289
Query: 244 DFSVKGVLDRFS----------------------------FETVLHALERATAIRTLAEP 275
S+ + + + LE L+ P
Sbjct: 290 ILSLALAAASGNTTTIANSAANLGAGLNVGIAPRVNGNYYLGALANFLESTGDANVLSTP 349
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGR 327
L + + A G + T S + T+V D ++L +P + G
Sbjct: 350 NLMTLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVRLMLRVSPQSTNTGT 409
>gi|160902548|ref|YP_001568129.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95]
gi|160360192|gb|ABX31806.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95]
Length = 694
Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 9/162 (5%)
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
F+ +++ +++P + G AS S V+ +
Sbjct: 528 TLQFDGIIN--GSKDKASLISKPVIYVNEGGRASIKSVLSVPVFDEEG----KIVSKIES 581
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
G ++ I + TE+ + + D R ++ +P+GG I L G
Sbjct: 582 GFIMEV---SGEYDNITKMVNTELDISISELKNEDKNIVDERNMNSKFIIPNGGFIKLGG 638
Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
L I + + GIP+ +IP++G LF + ++ I
Sbjct: 639 LNFTSIVENETGIPIFKEIPVIGQLFTSYEKTENVYDLVILI 680
>gi|149175013|ref|ZP_01853636.1| bacterial type II/III secretion system protein [Planctomyces maris
DSM 8797]
gi|148845991|gb|EDL60331.1| bacterial type II/III secretion system protein [Planctomyces maris
DSM 8797]
Length = 308
Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 31/173 (17%)
Query: 259 VLHALERATAIRTLA-EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
+ L++A + + P + +SGQSA+ SGG++ + + TSV +GV
Sbjct: 156 AIEQLKKAGRVTVVHGSPEIVTVSGQSATSMSGGKYP-VLIPAGDNQTSVEWKRFGVFCK 214
Query: 318 FTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL--- 370
P +L GRI L E+S+ + VN +P VR+ T E+ G T+V+
Sbjct: 215 VEPRLLDNGRIQLEFSPEISQRDYANAVKVNGLTIPGLTVRRIYTQAEMNLGETLVVRTV 274
Query: 371 ---AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
G + + ++ + E+T TP +
Sbjct: 275 SPAGG--QSQVVNA-----------------KSDTTSSEDTVTLFMVTPVAID 308
>gi|213647736|ref|ZP_03377789.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 396
Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/247 (15%), Positives = 78/247 (31%), Gaps = 52/247 (21%)
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
L+ L++ A NI++ DT L G V I+ +A+++++
Sbjct: 192 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 242
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
V L + I ++ + L+++G S + G
Sbjct: 243 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 271
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
+ + S LD F ++ALE ++ P L A F + K
Sbjct: 272 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 331
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSY 351
+ ++ YG ++ P + G+I + + E + + +P
Sbjct: 332 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 389
Query: 352 RVRKADT 358
T
Sbjct: 390 GRTLIST 396
>gi|153878167|ref|ZP_02004504.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152065369|gb|EDN65496.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length = 93
Score = 74.8 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFL 418
+ + G IV+ GL++ + Q K+GIP L P++G+ LF ++ N + TE+ + P +
Sbjct: 1 MVVRDGTAIVIGGLIQVNNQDDKQGIPGLQDFPLIGSILFSSTSNNDKHTELVLIIIPEV 60
Query: 419 VKPVAMR 425
V P A
Sbjct: 61 VNPAADN 67
>gi|303328014|ref|ZP_07358453.1| putative type IVB pilus formation outer membrane protein, R64 PilN
family [Desulfovibrio sp. 3_1_syn3]
gi|302861840|gb|EFL84775.1| putative type IVB pilus formation outer membrane protein, R64 PilN
family [Desulfovibrio sp. 3_1_syn3]
Length = 531
Score = 74.8 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/269 (15%), Positives = 74/269 (27%), Gaps = 28/269 (10%)
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLL---NIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ + + + + ++V N + N QV L V + + + G
Sbjct: 264 SVVGNQAAGTMTVRDRAENVRQVSNYIAEINKRLSRQVALTVHVWALEVTDENEAGLDFQ 323
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ ++ S + S V G L VL AL+ +
Sbjct: 324 VLFANDNVSIVAGSLASLGSPSSASATIVSGKLKNS--TGVLKALKEWGNATQVTSGGGL 381
Query: 279 AISGQSASFTS-------GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
+S Q + G ++ T + G + P +L R+ L+
Sbjct: 382 ILSNQPVPIQAIKRIAYLAGSSSSQSDYGQTTEITPGEVTTGFAMTIIPHILDRRRVLLQ 441
Query: 332 IQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+S E +P R + G T+VLAG +
Sbjct: 442 YSINLSSLDELTEFSTSDLTVQLPKTSTRAFSQRSTMQMGQTLVLAGFQDQSQKLANS-- 499
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAA 414
LG L +T + I
Sbjct: 500 --------LGLLNFGRGAKYGKTLLVITI 520
>gi|150377244|ref|YP_001313839.1| hypothetical protein Smed_5129 [Sinorhizobium medicae WSM419]
gi|150031791|gb|ABR63906.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 170
Score = 74.8 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 2/158 (1%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
L + ++ E + V+ + +G + ++ + +P
Sbjct: 3 RRSTGAVLLLAMSALVSPATADEQKSPVVPVQQKSVGADGVERLVVDFAKTVTLPRPAST 62
Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
V++ + A + RT+ L GK G N+I+I DG ++ NL + + L +
Sbjct: 63 VIIGNTGIAQASLSDDRTVILTGKTPGSTNLIVIDRDGAEVANLILDVVAGSGRLVT-VH 121
Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
+ + + D V+L G ++ A +++
Sbjct: 122 QGLRRATFTCGRRCDPVLLVGDDADHFNA-TASQIAAR 158
>gi|16263312|ref|NP_436105.1| hypothetical protein SMa1580 [Sinorhizobium meliloti 1021]
gi|14523991|gb|AAK65517.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
Length = 170
Score = 74.0 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 2/154 (1%)
Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
L + ++ + E A+I + G + ++ + +P V++
Sbjct: 7 GAVLLLAMSALVRPAAADEQKTAIIPVQQRSTGAKGVERLVVDFAKTVALPRPASTVIIG 66
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
+ A + RT+ L GK G N+I+I DG ++ NL + + L + +
Sbjct: 67 NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVT-VHQGAR 125
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
+ D V+L G ++ A +++
Sbjct: 126 RATFTCARRCDPVLLVGDDADHFNA-TASQIAAR 158
>gi|213649903|ref|ZP_03379956.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 109
Score = 74.0 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T +P G ++++ G +D + IP+L K+P++G+LFR S N+
Sbjct: 2 ISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRVFMIE 61
Query: 416 PF-LVKPVAMRD 426
P +V P+
Sbjct: 62 PKEIVDPLTPDA 73
>gi|307318076|ref|ZP_07597512.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306896117|gb|EFN26867.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
Length = 170
Score = 73.6 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 2/154 (1%)
Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
L + ++ + E A+I G + ++ + +P V++
Sbjct: 7 GAVLLLAMSALVRPAAADEQKTAIIPFQQRSTGAEGVERLVVDFAKTVALPRPASTVIIG 66
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
+ A + RT+ L GK G N+I+I DG ++ NL + + L + +
Sbjct: 67 NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVT-VHQGAR 125
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
+ D V+L G ++ A +++
Sbjct: 126 RATFTCARRCDPVLLVGDDADHFNA-TASQIAAR 158
>gi|307304369|ref|ZP_07584120.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|306902571|gb|EFN33165.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 170
Score = 73.6 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 2/154 (1%)
Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
L + ++ + E A+I + G + ++ + +P V++
Sbjct: 7 GAVLLLAMSALVRPAAADEQKTAIIPVQQRSTGAEGVERLVVDFAKTVALPRPASTVIIG 66
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
+ A + RT+ L GK G N+I+I DG ++ NL + + L + +
Sbjct: 67 NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVT-VHQGAR 125
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
+ D V+L G ++ A +++
Sbjct: 126 RATFTCARRCDPVLLVGDDADHFNA-TASQIAAR 158
>gi|87120224|ref|ZP_01076119.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121]
gi|86164327|gb|EAQ65597.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121]
Length = 57
Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G T+ L GL+ ++ +Q + G+P+L +P +G LFR+ + E+ + ++
Sbjct: 2 DGETMALGGLVSEETRQSESGVPMLKDLPFIGRLFRSESKETVQRELTVLIKTQIL 57
>gi|153829316|ref|ZP_01981983.1| MSHA biogenesis protein MshL [Vibrio cholerae 623-39]
gi|148875216|gb|EDL73351.1| MSHA biogenesis protein MshL [Vibrio cholerae 623-39]
Length = 429
Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/150 (21%), Positives = 46/150 (30%), Gaps = 16/150 (10%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235
QV L+ I EV Q G S SS+G S + + G
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSNGNPITSVLPG 332
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
+ V+ SF+ V+ + + L+ P +TA + Q A G Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
T SS T + TP
Sbjct: 393 VTDLSSVVGTG-DNAQASPDITLTPFFSGD 421
>gi|160903268|ref|YP_001568849.1| NolW domain-containing protein [Petrotoga mobilis SJ95]
gi|160360912|gb|ABX32526.1| NolW domain protein [Petrotoga mobilis SJ95]
Length = 388
Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 18/222 (8%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ L V I E + + F S FSV+ +
Sbjct: 176 IELTVYIVETNERYSD-------LIKGNVFNINQKGIINSFSFTSPAIGFSVQDL----- 223
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
FE + E+ + + + + G+ A + + ++ G+
Sbjct: 224 FEAEIEMYEKNETANLVTKQVVNVLPGEPALLSLKNLESIVFTTYRNEFRNIE---SGIE 280
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
+ TPT+++ L+I + D + +T V L +++A L
Sbjct: 281 IEMTPTMMNQ---ILQISFRTKTTNLMEVTNDSYLLSESELETKVNLNPNEILLIADLDL 337
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
+ G LL +P L LF +++ E + I T
Sbjct: 338 SQLYSKNGGTTLLKDLPFLRFLFGDNQNIDESKRMMIFLTAT 379
>gi|58038376|ref|YP_190345.1| PilN [Gluconobacter oxydans 621H]
gi|58000790|gb|AAW59689.1| PilN [Gluconobacter oxydans 621H]
Length = 571
Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/296 (14%), Positives = 90/296 (30%), Gaps = 38/296 (12%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKV------MNLLNIAGEDQVTLKVTIAEVRR 207
+ + ++ + + +V ++ L+ + QV + V + ++
Sbjct: 280 QKTADTIANGAQVIADEGLGTLSVTGNPDQVTRVSDWIHSLSESLMQQVAIDVHVYTLKE 339
Query: 208 DILKQIGFQHSITGSSSGPSKSF-----------AADFGGKFVSEGGDFSVKGVLDRFSF 256
GF I + G D F + D +
Sbjct: 340 THETNYGFSPQIALKNYGKVYGLSMIPAAIPGMQTNDIPFSFGASILDTAKGAAGQFSGS 399
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTS--------GGQHLYKTVSSSTGATSVT 308
+ + AL + + + A +G SA F + + + + S+ S
Sbjct: 400 QLAIQALSELGNVTEMYSRSAVATNGMSAPFQNGINTTYLANSSTVLASNAGSSATLSPG 459
Query: 309 THDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
G + TP ++ L+ + ++ P D TV L
Sbjct: 460 VVMSGFMGEITPRIVDQRILLHINFLLQTLLSIQTFQSNGSSIQEPKTSSTSLDDTVVLR 519
Query: 364 SGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPF 417
SG T++L+G + D + + G+ PL LG ++T++ +
Sbjct: 520 SGSTLMLSGYVDDSSSRDRTGVGSPLF----WLGG--GGGDAQTQKTQVIVTVEAH 569
>gi|189017140|ref|YP_001909457.1| Lipoprotein [Erwinia tasmaniensis Et1/99]
gi|188027077|emb|CAO94861.1| Lipoprotein [Erwinia tasmaniensis Et1/99]
Length = 568
Score = 72.5 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/251 (19%), Positives = 80/251 (31%), Gaps = 29/251 (11%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
QV LKV I V D+ +G S+ + G + + G S +
Sbjct: 321 SRQVNLKVVIYTVNSDVSDAVGLDWSVIYKTLAGKYGINLAGPGGSIVDAGSLSFSVLDT 380
Query: 253 RFSF-------ETVLHALERATAIRTLAEPTLTA---------ISGQSASFTSGGQHLYK 296
+ AL + + + L + Q A S +Y
Sbjct: 381 ATGSARQFAGSSFLFDALSKQAKVADVRTIPLMTSNMASASVVVGRQIAYLKSVATTVYS 440
Query: 297 TVSSSTGATSVTT--HDYGVVLHFTPTVLSPG-RIGLRIQTEVS------EPVIGVNAGD 347
T +S+ + ++T G + P VL G R+ L + +S + +
Sbjct: 441 TGNSTLPSQTLTPGSVTTGTNITIFPKVLDGGDRMMLNMFLNISSLIQLRQISSDTEKLE 500
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
P R V L G T+V++GL ++ KEG+ + G
Sbjct: 501 APEVDSRSVPQRVWLKPGQTVVISGLEQNVTNVNKEGM-FSPDNIVTG---GKRSGGSIR 556
Query: 408 TEIFIAATPFL 418
I TPF+
Sbjct: 557 QSFVITVTPFI 567
>gi|269123031|ref|YP_003305608.1| Type II secretory pathway component PulD-like protein
[Streptobacillus moniliformis DSM 12112]
gi|268314357|gb|ACZ00731.1| Type II secretory pathway component PulD-like protein
[Streptobacillus moniliformis DSM 12112]
Length = 312
Score = 72.1 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/324 (12%), Positives = 97/324 (29%), Gaps = 57/324 (17%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHL-------EMTLRRFIADSNIRVEMVSDTVVLHGMV 151
+ + ++ N ++ ++ + E + + +++ V D +L G
Sbjct: 27 IKIYNEKKVEIKNKEVKKVEEVYEILKIQNIPENEILKLDGSFGVKIRKVGDKYILSGEK 86
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
+ I + + MN + +
Sbjct: 87 KNISKLKHII----------YSIDKIKKQIIIKMN---------------VIDTSISFFD 121
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
+ G + ++ KF+ S L + AL+++ +
Sbjct: 122 RFGLNLKLE-------ENKNDGLVAKFLENKLSLSNLLNLGGAKLGLDIEALKQSGDMYI 174
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---I 328
+ P++ + + +K V T + G++ P +++ G +
Sbjct: 175 KSFPSIMVLDNSEGEMRITDELSFKVSEK-----KVQTSEAGLIFKIKPRIVTKGYKEFV 229
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
L I +E+S +T V L + ++G+ ++ P
Sbjct: 230 ELEIYSEISSFKSEKVR------SKNILNTKVLLKDKTSTFISGVGRESKSINISN-P-- 280
Query: 389 SKIPILGALFRNSRFNREETEIFI 412
IPI LFR N+E+ I++
Sbjct: 281 -SIPIFSTLFRKKSKNKEKRNIYV 303
>gi|281356727|ref|ZP_06243218.1| hypothetical protein Vvad_PD2101 [Victivallis vadensis ATCC
BAA-548]
gi|281316854|gb|EFB00877.1| hypothetical protein Vvad_PD2101 [Victivallis vadensis ATCC
BAA-548]
Length = 479
Score = 72.1 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/274 (16%), Positives = 87/274 (31%), Gaps = 41/274 (14%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-------------DFGGKFVSE 241
QV L + + + + +++G + + G DF S
Sbjct: 196 QVQLNIYV--ISDNNFRELGIDYLAWKNGPGAEIFATGFDFSNFYSVEHLQDFTNILSSG 253
Query: 242 GG--DFSVKGVLDRFSFETV-LHALERATAIRTLAEPTLTAISGQSAS------------ 286
+ G+L +F+ L L + T A LT + +
Sbjct: 254 PIWDATGLGGILVAPNFDATFLRMLAQKGKAWTAASAMLTLTNDFTTPAATSWEDASYRF 313
Query: 287 -FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG------RIGLRIQTEVSEP 339
FT Q++ K + +T ++ ++ L + EV+
Sbjct: 314 KFTPQLQNIVKDENQTTSLDALDGSEFSFYLSSPVICFGDDPAKKALTLMCNWNLEVNSL 373
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
V N + + + + L +G +LA K + + G+P L +IP+L LF
Sbjct: 374 VETDN-QGVATIDSNSFSSNLTLEAGTEKLLAVYDKHVVTEQYNGMPFLGEIPVLKYLFG 432
Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
+ + T V PV +++ P
Sbjct: 433 AESKVDSKMR--VFVTMSAV-PVETKNIPNPAAG 463
>gi|114798749|ref|YP_761695.1| hypothetical protein HNE_3018 [Hyphomonas neptunium ATCC 15444]
gi|114738923|gb|ABI77048.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
Length = 147
Score = 71.7 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 52/102 (50%)
Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
+K A A+ ++ +++S+ +K + L++ ++V + ADV VH R +
Sbjct: 4 AVKPALVALASLFLAGTAFAQQLSVEASKTVPLRLTGPAASIVVGNKNIADVAVHDDRLI 63
Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
++ GK+ G N+++ G+++ + ++++ + + L R
Sbjct: 64 FVTGKSYGTTNLMVFNKAGEEVYSAEVVVTANSSSLVTVNRA 105
>gi|45751681|emb|CAF21324.1| InvG protein [Burkholderia pseudomallei]
Length = 214
Score = 71.3 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 22/219 (10%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G+ D RAV +T + ++ L++ + Q+ L + I ++R+
Sbjct: 10 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 68
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
L Q+G ++ G F G LD F + AL +
Sbjct: 69 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 117
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
++ P + A+F S K + T + YG +++ P + G +
Sbjct: 118 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 175
Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTT 359
+ + + E S+ I ++ MP + +T
Sbjct: 176 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTV 214
>gi|330983953|gb|EGH82056.1| putative lipoprotein [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 561
Score = 71.3 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/276 (16%), Positives = 85/276 (30%), Gaps = 31/276 (11%)
Query: 170 QSGRNQYANSSSKKVMNLLNIA---GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
S +KV + Q+ ++ + E+ D + Q S S G
Sbjct: 291 GSLTVTDTPQVMEKVSRYIKTQNAIANKQIAIRADVYEINSDENGEFDPQLSALYSFGGF 350
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
D + D S L + ++ T+ A +G+
Sbjct: 351 KLGMQDDTFTFSPNRDSTTMNHKFSDSSS--AAFKLLRTNKNVAQVSSSTIYAQNGEPTP 408
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDY---------------GVVLHFTPTVLSPGRIGLR 331
F + Y ++S + G + P V S GR+ ++
Sbjct: 409 FQQLDEIGYLAEVQIETSSSSESSSSDASNLATLKPGKTSQGYSMTIIPRVTSDGRVMMK 468
Query: 332 IQTEVSEPVI-------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
+ S G +PS K + V + SG +++AG+ +
Sbjct: 469 FAVDSSRLNSIDSYGLDGGAQIQVPSRSTNKNNQLVTVKSGEPLMIAGIERTANNATITS 528
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
PL K +LG + +++ I TP+++K
Sbjct: 529 -PLGRKSWLLG---GSQSGGKKKIMTMIVLTPYIMK 560
>gi|221215376|ref|ZP_03588341.1| putative component of type II secretion apparatus [Burkholderia
multivorans CGD1]
gi|221164808|gb|EED97289.1| putative component of type II secretion apparatus [Burkholderia
multivorans CGD1]
Length = 550
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/274 (14%), Positives = 87/274 (31%), Gaps = 26/274 (9%)
Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP- 226
+ ++ + LN + + + V++ EV + G S+ SS
Sbjct: 281 VITITGTPPQCDRLERWIKELNASFSKSIAIDVSVYEVHLSNNENYGANLSLAYKSSSGH 340
Query: 227 -SKSFAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISG 282
SF+ K S+ + + AL + + + + +G
Sbjct: 341 TGVSFSGASVPKVSGAASAMSLGATILSGPMAGSTAAVQALSALGNVSQVVQRSGMTQNG 400
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-------PGRIGLRIQTE 335
++ + + Y + ST A +V TP GRI +
Sbjct: 401 KALNLQAATDQDYVNQTQSTLAANVGATSGIQTATVTPGFTGSFLPRYRDGRIFVVFDMT 460
Query: 336 VSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
+S + + + + + +V L G ++V+ G+ + K G+
Sbjct: 461 LSNLTALEPYPPNPKTDQASVQLRTLQKSRFQQSVSLKPGDSLVITGMYQQTASVNKNGV 520
Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P+LG +++T + I + ++
Sbjct: 521 -GSPSFPLLG---GGIDAQKKDTILAIVISARVL 550
>gi|322436034|ref|YP_004218246.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX9]
gi|321163761|gb|ADW69466.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX9]
Length = 635
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
+ G SAS +SS + D G+ L TPTVL G I + I ++
Sbjct: 477 VTVGGVSASSLLNQ----YLGASSQTIPQIQYEDIGITLKTTPTVLKSGLITMHIDLKI- 531
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
E + G +A ++P R + V P G T ++ L GIP L+++P
Sbjct: 532 EALTGQSANNIPVLTSRVFTSDVTCPEGSTAMMLSQLSSQESAAVSGIPGLAELPGFQTS 591
Query: 398 FRNSRFNREETEIFIAATPFLVK 420
+ R+ +E+ + TP LV+
Sbjct: 592 VADRITERDSSELVMMVTPHLVR 614
>gi|325271188|ref|ZP_08137740.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51]
gi|324103677|gb|EGC00972.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51]
Length = 360
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 49/259 (18%), Positives = 91/259 (35%), Gaps = 24/259 (9%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
RD+A+L TL+ V+ V + G + S + S
Sbjct: 117 YRDVAYLSETLQPLFEGR----FAVNRQVSVPGATPSPLSSPQGSAASLVSRDSDHLVFV 172
Query: 177 ANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
+ + + + LL + +V ++ + EV+ GS+ + S
Sbjct: 173 GSKAEIEKVKLLLPQIDIAMGEVMVRGVVYEVQTGDSN---------GSAFSLAASLLKG 223
Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
++ G F + L F VL AL R +++P+L SG A+F+ G +
Sbjct: 224 KLNITLA-GNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPSLRVRSGAEATFSVGAEV 282
Query: 294 L-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GD 347
S SV D GV+ + P + + L + ++S V +
Sbjct: 283 PVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQ-VRESTVDLVVDQQLSNFVQTTTGVNN 341
Query: 348 MPSYRVRKADTTVELPSGG 366
P+ R+ T+V++
Sbjct: 342 SPTLTKRQLTTSVQMRDRE 360
>gi|325107410|ref|YP_004268478.1| type II and III secretion system protein [Planctomyces brasiliensis
DSM 5305]
gi|324967678|gb|ADY58456.1| type II and III secretion system protein [Planctomyces brasiliensis
DSM 5305]
Length = 1546
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
T V +P GGT++L G+ + + G+P+L+KIP + LF+N+ RE + + T
Sbjct: 1469 VQTVVSVPDGGTVLLGGVKRLREGRNMAGVPILNKIPYVSRLFKNTGVGRETESLMLMVT 1528
Query: 416 PFLV 419
P ++
Sbjct: 1529 PRII 1532
>gi|222147187|ref|YP_002548144.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
gi|221734177|gb|ACM35140.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
Length = 159
Score = 70.5 bits (171), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 6 RTFFTMMSIFLF-----SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
R F+M LF +A +P A + + + +N+ IL
Sbjct: 7 REMFSMALPMLFRCCFAFLLAGMATVPGTAHAEDPL-------------LRVVMNQARIL 53
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
++ V V++ + AD V P+T+ L G++ G N++L+ G + + IL+ D
Sbjct: 54 KLDRPVSKVIIGNEKVADATVADPKTIVLTGRSFGTTNLVLLDSQGNAIFDERILVSID 112
>gi|114568966|ref|YP_755646.1| hypothetical protein Mmar10_0415 [Maricaulis maris MCS10]
gi|114339428|gb|ABI64708.1| conserved hypothetical protein [Maricaulis maris MCS10]
Length = 152
Score = 70.5 bits (171), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 46/91 (50%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
A A + I V +++ + ++++P + ++V +P+ AD +VH RT+ + G
Sbjct: 6 ATAFTLAIVCVAPAAAHDLAVPVEHAEVIRLPAEASAIVVGNPSIADALVHDGRTLVVTG 65
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAH 122
+ G+ NVI + G+ + DI++ +
Sbjct: 66 RLQGRTNVIALDRVGRVIYERDIVVSNPVEG 96
>gi|296120909|ref|YP_003628687.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776]
gi|296013249|gb|ADG66488.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776]
Length = 1566
Score = 70.5 bits (171), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
+P TTV +P GGT++L G+ + + G+P+L+KIP + LF+NS RE
Sbjct: 1481 LPVVEQVTVLTTVSVPDGGTVLLGGVKRLREGRNMAGVPILNKIPYVSRLFKNSGVGRET 1540
Query: 408 TEIFIAATPFLV 419
+ + TP +V
Sbjct: 1541 ESLMLMVTPRIV 1552
Score = 43.6 bits (101), Expect = 0.071, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 9/137 (6%)
Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
G DFGG + G + + D +F + A + + L P LT +GQ
Sbjct: 1266 QGSFDIGVPDFGGFDPTAGITTGLAILSDLEAF-FFIQAAQGDSRSNLLFAPKLTLFNGQ 1324
Query: 284 SASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTE 335
+A+ + + T ++T + GV L T + + R + L I
Sbjct: 1325 TATVSDTVNRFFVTGYNTTVGVGAAIQTPQIQQFPEGVSLTVTAVISADRRYVRLTIIPN 1384
Query: 336 VSEPVIGVNAGDMPSYR 352
+
Sbjct: 1385 FTSITDVQTFSTASGVT 1401
>gi|59714055|ref|YP_206830.1| toxin coregulated pilus outer membrane protein TcpC [Vibrio
fischeri ES114]
gi|59482303|gb|AAW87942.1| toxin coregulated pilus outer membrane protein TcpC [Vibrio
fischeri ES114]
Length = 484
Score = 70.5 bits (171), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 74/215 (34%), Gaps = 8/215 (3%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
++ + L + QV+++ I + + L Q+ + + + + + +
Sbjct: 235 DQLFDRLKAESQMQVSVQYRIISLSKSKLSQLAAKFGLDSKGNDFTITSELVDSVALNAA 294
Query: 242 GGDFSVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYK--- 296
GG S + V+ L + + + P + + + +
Sbjct: 295 GGGLSFAKRSVSGRLDAVVKYLAQDVVSEGHFVGLPNRIMPINLTTTSSYISEVEKVDNE 354
Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVR 354
V ST + + G+ + P VL GRI L + + V+ +P+
Sbjct: 355 NVDKSTTSLKTSEIKTGLSMLILPKVLEDGRIQLTSGFTKKQLIAMDTVSGVQLPTVDEN 414
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ +TV L SG ++ L K + + LL
Sbjct: 415 ETLSTVTLDSGDVELIT-LYKGNSNNSAQAAQLLG 448
>gi|239833241|ref|ZP_04681570.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
3301]
gi|239825508|gb|EEQ97076.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
3301]
Length = 139
Score = 69.8 bits (169), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 50/103 (48%)
Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
A + I+ + I++ ++ IL++ V++ +P+ AD VV +T+
Sbjct: 14 VPAMGAAFMAVIAVAQASAEDYIALETSQARILRLARPADSVVIGNPSIADAVVQDAQTI 73
Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
L GK+ G N++++ G+ +L+ ++++ R+ R+
Sbjct: 74 VLTGKDFGVTNIVVMDKQGEPILDRELVVSRNTRGTTRIYRQA 116
>gi|90409526|ref|ZP_01217562.1| type II secretion system protein [Psychromonas sp. CNPT3]
gi|90309367|gb|EAS37616.1| type II secretion system protein [Psychromonas sp. CNPT3]
Length = 98
Score = 69.4 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 37/82 (45%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ K +++ L++ +L +P + + ++ AD + + +FGK VG ++ ++
Sbjct: 17 SAQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTKIMIFGKRVGSTSLYVLD 76
Query: 104 HDGKQMLNLDILIERDIAHLEM 125
+ + + + ++ L
Sbjct: 77 ARENVIYSATVKVNHNVQELNA 98
>gi|167648156|ref|YP_001685819.1| hypothetical protein Caul_4197 [Caulobacter sp. K31]
gi|167350586|gb|ABZ73321.1| conserved hypothetical protein [Caulobacter sp. K31]
Length = 131
Score = 69.4 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 37/88 (42%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
++ + +S+ + + + V+DV+V +P ADV + + RT+ + GK
Sbjct: 13 SLGATAAGAQSLASPLSVSAGQAARISLSAPVRDVVVGNPAVADVSLINERTLVILGKKA 72
Query: 95 GQANVILIGHDGKQMLNLDILIERDIAH 122
G V+ G + + +++
Sbjct: 73 GATTVMAFDARGHALADRQVVVSDIPDG 100
>gi|225872364|ref|YP_002753819.1| transporter, outer bacterial membrane secretin (Secretin) family
[Acidobacterium capsulatum ATCC 51196]
gi|225793711|gb|ACO33801.1| transporter, outer bacterial membrane secretin (Secretin) family
[Acidobacterium capsulatum ATCC 51196]
Length = 616
Score = 69.0 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 2/149 (1%)
Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
G S++ S G +S+ V D G+ LH TP+V G +
Sbjct: 460 LTSPGVSSALQSLGISSSSLLSTEETIPQVQYEDLGLTLHVTPSVTGRGNVA-LKLDLKL 518
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ + G + +P R+ + G + ++ + + GIP LS++P G
Sbjct: 519 DTLEGQSLNSIPVLNDRELTAITTVKPGSSAMIMSSMSQQLSNAVTGIPGLSELPGFGNA 578
Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426
NS ++ + + I TP +V+ V +
Sbjct: 579 -TNSDASKNISRLVIVVTPRIVRRVHAEE 606
>gi|83859353|ref|ZP_00952874.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
HTCC2633]
gi|83852800|gb|EAP90653.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
HTCC2633]
Length = 146
Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 52/97 (53%)
Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
AA++ + + + ++ + ++ ++++P D V+V +P AD +++ RT+++ GK
Sbjct: 7 AAALVMTLGLGVAQAREFVVTADQAGLIRLPGDASGVIVGNPGIADAMLYDSRTLFVTGK 66
Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
G+ N+I++ G+ + D+++ + + R
Sbjct: 67 VFGRTNLIVLDEAGRVLYTSDLVVTQPDSQTVQVFRS 103
>gi|227818617|ref|YP_002822588.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii
NGR234]
gi|36958873|gb|AAQ87298.1| CpaC [Sinorhizobium fredii NGR234]
gi|227337616|gb|ACP21835.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii
NGR234]
Length = 172
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 3/126 (2%)
Query: 1 MRYLQRTFF--TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI-SIGLNKV 57
MR + R + + +L + + + A + + + + + ++
Sbjct: 1 MRVVPRHVVPGHIGAGWLVPALLACTLFGAAQAAEDRPPTTALEPTRQTEGVVRVIVDFA 60
Query: 58 IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
L + +++ +PT A + +T+ L GK G N+I++ G ++ N+ + +
Sbjct: 61 RPLILARPASTLIIGNPTIAQATLSDDKTVILTGKTPGSTNLIVMDAAGAEVANIILDVA 120
Query: 118 RDIAHL 123
L
Sbjct: 121 AAGGRL 126
>gi|153008055|ref|YP_001369270.1| hypothetical protein Oant_0719 [Ochrobactrum anthropi ATCC 49188]
gi|151559943|gb|ABS13441.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
Length = 139
Score = 68.2 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+ R F + + S+ + I++ ++ IL++
Sbjct: 1 MTRRLFALGGFGMVSAMGLAFMTVFAA-----------IPASAEDYIALETSQARILRLA 49
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
V++ +P+ AD VV +T+ L GK+ G N++++ G+ +L+ ++++ R+
Sbjct: 50 RPADSVVIGNPSIADAVVQDAQTIVLTGKDFGVTNIVVMDKQGEPILDRELVVSRNARGT 109
Query: 124 EMTLRRF 130
R+
Sbjct: 110 TRIYRQA 116
>gi|110632963|ref|YP_673171.1| hypothetical protein Meso_0606 [Mesorhizobium sp. BNC1]
gi|110283947|gb|ABG62006.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 167
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 43/107 (40%)
Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
+ + P + + V + + + ++ +L + ++V +
Sbjct: 9 LALAVLLVTPPAEAGGDPLLAVEQTVAYERAGAVRLTIDFAELLVLDEPASTIIVGNSAI 68
Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
A + RT+ L G+ G N+I++ +G+++ NL + + HL
Sbjct: 69 AAASLTDDRTLILTGRTAGATNLIVLDAEGEEIANLVLEVVAAGNHL 115
>gi|220923688|ref|YP_002498990.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060]
gi|219948295|gb|ACL58687.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060]
Length = 169
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 20/137 (14%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M+ + T + ++ L S P++++ + + + IL
Sbjct: 1 MKRFRPTLHGVAAVALASLLPAMSQ--------------------AADTLDLTVGHSQIL 40
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ V + + DP AD + T+ + GK +G N+I + G ++L + +
Sbjct: 41 RPGKAVGTIAIGDPDIADATTAAGGTILVTGKKIGTTNIIALDETGSEVLASTLRVVPID 100
Query: 121 AHLEMTLRRFIADSNIR 137
+ ++ I
Sbjct: 101 RRPKYSVDVIKGGQRIE 117
>gi|315497470|ref|YP_004086274.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48]
gi|315415482|gb|ADU12123.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48]
Length = 141
Score = 67.8 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 44/103 (42%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A +S KI + N + +P V+V +P ADV V RT+Y+ G+
Sbjct: 12 ALTALLSAGAAEAASKIVVEKNHSTRVVLPASAGSVIVGNPEVADVTVVDSRTIYIMGRG 71
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
G+++V + G+ + + D+++ + + + I
Sbjct: 72 FGRSSVSVTDSAGRNIFDADVMVGTPVEGGVTVYKGLKPSTMI 114
>gi|163757621|ref|ZP_02164710.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
DFL-43]
gi|162285123|gb|EDQ35405.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
DFL-43]
Length = 136
Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 47/99 (47%)
Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
P +L A + + I + ++ IL++ V V++ + ADV
Sbjct: 6 PVRRRLAIAAFGMAIAVLSPLTAVADEDLIRVFMDHARILKLDRTVSKVIIGNAAVADVT 65
Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V PRT+ L GK+ G N++++ +G+ +++ IL+ D
Sbjct: 66 VSDPRTIVLTGKSYGTTNLVILDQEGEAIVDERILVSVD 104
>gi|304320642|ref|YP_003854285.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis
HTCC2503]
gi|303299544|gb|ADM09143.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis
HTCC2503]
Length = 178
Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 2/156 (1%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A + + + ++ + LN + + ++V +P ADV V + + LFGK
Sbjct: 8 AVIAATALAPTAQAGEMWLTLNDARFHETAKPISSIVVGNPAIADVTVRTKTNIILFGKM 67
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G + L G+ + L + + ++ L+ V + + G
Sbjct: 68 PGATTITLFDARGEVIDRLALKVRNASNNVVT-LQAGENRYTFSCTTVCEQIPAIGDGSN 126
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
++ A ++E R ++ S V+ L
Sbjct: 127 ESRAELA-SVAEQAQQAVTRASAGDNPSNSVVESLE 161
>gi|23016187|ref|ZP_00055946.1| COG0304: 3-oxoacyl-(acyl-carrier-protein) synthase
[Magnetospirillum magnetotacticum MS-1]
Length = 142
Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 42/88 (47%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
+ AA++ + + + + L I+L + V+ V+V +P ADV V P ++
Sbjct: 5 LPPLLAALVWAAPQAAQASEALELPLGGAIVLPMRGGVRTVVVGNPAIADVSVDGPGSVT 64
Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILI 116
+FGK G +++ + G + +++
Sbjct: 65 VFGKGPGATSLVALDAGGGVLAERQVVV 92
>gi|13474655|ref|NP_106224.1| hypothetical protein mll5591 [Mesorhizobium loti MAFF303099]
gi|14025410|dbj|BAB52010.1| mll5591 [Mesorhizobium loti MAFF303099]
Length = 129
Score = 67.1 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 37/87 (42%)
Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
I + +N+ I+++ ++V +P AD V T+ L GK G
Sbjct: 4 AATSLITPARAAADIEVTMNQAKIVKLSRPADTIVVGNPAIADASVQDASTIVLTGKGFG 63
Query: 96 QANVILIGHDGKQMLNLDILIERDIAH 122
N++++ +G +++ + + R A
Sbjct: 64 VTNLVVLDQEGSPIVDAQVTVVRQAAS 90
>gi|260461953|ref|ZP_05810198.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259032200|gb|EEW33466.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 141
Score = 67.1 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 41/91 (45%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
A V G I + +N+ I+++ ++V +P+ AD V T+ L G
Sbjct: 11 AALLAATCLVVPARAGTGIEVTMNQAKIVKLSRPADTIVVGNPSIADASVQDASTIVLTG 70
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAH 122
K G N++++ +G +++ + + R A
Sbjct: 71 KGFGVTNLVVLDQEGSPIVDAQVTVVRQAAS 101
>gi|300021849|ref|YP_003754460.1| hypothetical protein Hden_0314 [Hyphomicrobium denitrificans ATCC
51888]
gi|299523670|gb|ADJ22139.1| conserved hypothetical protein [Hyphomicrobium denitrificans ATCC
51888]
Length = 170
Score = 67.1 bits (162), Expect = 7e-09, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 38/85 (44%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
A I + + ++ +L +P +V+V +P+ ADV + + + GK
Sbjct: 23 AAIVALSAAGASAGDLIVRYDQSQLLHLPRPASEVIVGNPSIADVTLQDGNLLVVTGKTF 82
Query: 95 GQANVILIGHDGKQMLNLDILIERD 119
G NVI + + + +++ERD
Sbjct: 83 GITNVIALDAAHNVIQDQRVMVERD 107
>gi|190889877|ref|YP_001976419.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
gi|190695156|gb|ACE89241.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
Length = 136
Score = 66.7 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 12/129 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A + + ++ +L++ V V+V + AD V +T+ L G++
Sbjct: 15 AVFGVSGISAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G N++L+ DG +L+ E L + +RV ++ VL
Sbjct: 75 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
Query: 154 IQDSQRAVE 162
Q +Q+A +
Sbjct: 123 EQHAQQAAD 131
>gi|319785612|ref|YP_004145088.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171500|gb|ADV15038.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 140
Score = 66.7 bits (161), Expect = 9e-09, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 41/91 (45%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
A ++ G I + +N+ I+++ ++V +P AD V T+ L G
Sbjct: 11 AALLAVSSFVAPAMAGAGIEVTMNQAKIVKLSRPADTIVVGNPAIADASVQDASTIVLTG 70
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAH 122
K G N++++ DG +++ + + R A
Sbjct: 71 KGFGVTNLVVLDTDGSPIVDEQVTVVRQAAS 101
>gi|218506995|ref|ZP_03504873.1| pilus subunit transmembrane protein [Rhizobium etli Brasil 5]
Length = 151
Score = 66.3 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 12/129 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A + + ++ +L++ V V+V + AD V +T+ L G++
Sbjct: 15 AVFGVSGISTAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G N++L+ DG +L+ E L + +RV ++ VL
Sbjct: 75 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
Query: 154 IQDSQRAVE 162
Q +Q+A +
Sbjct: 123 EQHAQQAAD 131
>gi|218671456|ref|ZP_03521126.1| pilus subunit transmembrane protein [Rhizobium etli GR56]
Length = 135
Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A + + ++ +L++ V V+V + AD V +T+ L G++
Sbjct: 15 AVFGVSGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G N++L+ DG +L+ E L + +RV ++ VL
Sbjct: 75 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
Query: 154 IQDSQRAV 161
Q +Q+A
Sbjct: 123 EQHAQQAA 130
>gi|144897438|emb|CAM74302.1| conserved hypothetical protein, secreted [Magnetospirillum
gryphiswaldense MSR-1]
Length = 138
Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89
A ++ V + + +G + + V V++ DP ADV V S + L
Sbjct: 4 AFFAAVILTAFAVSSARADTLELGAGQSRRVDAGRGVAQVVIGDPKVADVSVDSAGRIQL 63
Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIE 117
FGK G ++ ++G +G +L+ +++
Sbjct: 64 FGKRAGSTSLTVLGRNGAVLLDHTVVVR 91
>gi|295701132|ref|YP_003610133.1| type II secretory pathway component PulD-like protein [Burkholderia
sp. CCGE1002]
gi|295441455|gb|ADG20622.1| type II secretory pathway component PulD-like protein [Burkholderia
sp. CCGE1002]
Length = 538
Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/275 (17%), Positives = 87/275 (31%), Gaps = 38/275 (13%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229
+ A K++ N QV L+V ++ + Q G + + +
Sbjct: 271 DTREAADRMGKLLAQENAVSTRQVMLRVRTLQIALNNGSQAGVNADVVFNYIQGGLARYA 330
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ S GG + + F V++AL + + T ++G S
Sbjct: 331 VSFTSPTSLSSGGGTVGLSVLQANAPFSGTNAVINALNQYGRTVQDSTQTKMTLNGLPVS 390
Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
+L T S+ T+ + G+ ++ P V +I L +
Sbjct: 391 IASFQSDDYLRSTSPSAGSLTATSGGVPGLTPGTVTTGDFVNILPAVNDHNQIILSYWAD 450
Query: 336 VSEPVIGVNAGDMPSYRV-----------RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
S+ + + S + K D T+ L G T+VL G + D
Sbjct: 451 SSKLNGPFTSASVGSGQTLQQIQLAHTTGSKEDQTIALSDGQTVVLYGQMTDLANSTTN- 509
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
I + L +N+ +T I T +V
Sbjct: 510 ----GGIAGITGL-----WNKSKTFQVIMLTATVV 535
>gi|327194698|gb|EGE61544.1| pilus subunit transmembrane protein [Rhizobium etli CNPAF512]
Length = 136
Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 12/129 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A + + ++ +L++ V V+V + AD V +T+ L G++
Sbjct: 15 AVFGVSGISTAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G N++L+ DG +L+ E L + +RV ++ VL
Sbjct: 75 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
Query: 154 IQDSQRAVE 162
Q +Q+A +
Sbjct: 123 EQHAQQAAD 131
>gi|209551755|ref|YP_002283672.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537511|gb|ACI57446.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 136
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A + + ++ +L++ V V+V + AD V +T+ L G++
Sbjct: 15 AVFGVSGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G N++L+ DG +L+ E L + +RV ++ VL
Sbjct: 75 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
Query: 154 IQDSQRAV 161
Q +Q+A
Sbjct: 123 EQHAQQAA 130
>gi|254225078|ref|ZP_04918692.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae V51]
gi|125622465|gb|EAZ50785.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae V51]
Length = 489
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 81/274 (29%), Gaps = 26/274 (9%)
Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-----------YANSSSKKVM--- 185
+ L G T +S ++ E + G + K +
Sbjct: 183 TSGTSSGLKGTADTAIESNSWEKIDEFLSASLGETGKFTIFEDYSLVTVKARPDKFLLLH 242
Query: 186 ---NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
+ L + Q+ + + + + L Q+ + I + S D G
Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVG 301
Query: 243 GDFSVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
G + V++ L + + P + + ++
Sbjct: 302 GGLGASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTN 361
Query: 301 STGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRK 355
+ T V+ G + P +L GRI + + V +P+ +
Sbjct: 362 TDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENE 421
Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
+ TV + G + LA L KD+ Q G+ LL
Sbjct: 422 SMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454
>gi|48411|emb|CAA45458.1| tcpC (lipoprotein) [Vibrio cholerae]
gi|383775|prf||1904214A outer membrane lipoprotein
Length = 489
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%)
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
+ L + Q+ + + + + L Q+ + I + S D GG
Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304
Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ V++ L + + P + + +++
Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364
Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
T V+ G + P +L GRI + + V +P+ ++
Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
TV + G + LA L KD+ Q G+ LL
Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454
>gi|90419761|ref|ZP_01227670.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans
SI85-9A1]
gi|90335802|gb|EAS49550.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans
SI85-9A1]
Length = 157
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 52/134 (38%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
+ + + ++ I+Q+ V+V +P DV V S + L G++ G N++
Sbjct: 24 AAAVDSRDVLPVEVDHARIVQIDNPAATVIVGNPAIVDVEVLSSNRLVLTGRSYGITNLV 83
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
++ +G +++ + ++ + R+ + TV + V + ++ +
Sbjct: 84 ILDANGDIVMDQQVAVQSFEDNTVRVYRQASRVTYACAPKCEPTVTIGDNVDSFGEAAQQ 143
Query: 161 VELSETFLSQSGRN 174
+ + +
Sbjct: 144 YAQRQGMAMDAAKQ 157
>gi|147675545|ref|YP_001216312.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae O395]
gi|262168740|ref|ZP_06036435.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
RC27]
gi|13377522|gb|AAK20758.1|AF325733_14 toxin-coregulated pilus biosynthesis outer membrane protein C
(lipoprotein) [Vibrio cholerae]
gi|146317428|gb|ABQ21967.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae O395]
gi|227012652|gb|ACP08862.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae O395]
gi|262022858|gb|EEY41564.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
RC27]
Length = 489
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%)
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
+ L + Q+ + + + + L Q+ + I + S D GG
Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304
Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ V++ L + + P + + +++
Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364
Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
T V+ G + P +L GRI + + V +P+ ++
Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
TV + G + LA L KD+ Q G+ LL
Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454
>gi|62959541|gb|AAY23728.1| hydroxylamine oxidase [Acinetobacter sp. YY-5]
Length = 149
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 7/118 (5%)
Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TG 303
R ++ ++ AL+ T L+ P++ + + A G + T S +
Sbjct: 26 NSRKAYGALIQALKANTKSNLLSTPSIVTMDNEEAYIVVGQNVPFVTGSVATQGNSTVNP 85
Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
T+V D GV L P + G + L ++ EVS R T+V
Sbjct: 86 YTTVERKDVGVTLKVVPHIGEGGSVRLEVEQEVSAVQESRGQATDLVTSKRAIKTSVL 143
>gi|153818067|ref|ZP_01970734.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae NCTC 8457]
gi|126511413|gb|EAZ74007.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae NCTC 8457]
Length = 489
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%)
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
+ L + Q+ + + + + L Q+ + I + S D GG
Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304
Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ V++ L + + P + + +++
Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364
Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
T V+ G + P +L GRI + + V +P+ ++
Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
TV + G + LA L KD+ Q G+ LL
Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454
>gi|218461610|ref|ZP_03501701.1| pilus subunit transmembrane protein [Rhizobium etli Kim 5]
Length = 124
Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A + + ++ +L++ V V+V + AD V +T+ L G++
Sbjct: 3 AVFGVSGISAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 62
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G N++L+ DG +L+ E L + +RV ++ VL
Sbjct: 63 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 110
Query: 154 IQDSQRAV 161
Q +Q+A
Sbjct: 111 EQHAQQAA 118
>gi|296444401|ref|ZP_06886366.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
gi|296258048|gb|EFH05110.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
Length = 155
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY-LFGKN 93
AV+ + + + + + +++ ++++P Q +++ +P ADV + + + GK+
Sbjct: 17 AVMGATSRSFAEQRALYVDIDRARVVRMPDGAQTIIIGNPLVADVTMLKANRLLVVTGKS 76
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHL 123
G N+IL+ G +++ I + L
Sbjct: 77 FGTTNLILLDESGGEVVEQTITVTPASDKL 106
>gi|258620016|ref|ZP_05715056.1| Toxin coregulated pilus biosynthesis outer membrane protein C
[Vibrio mimicus VM573]
gi|258587749|gb|EEW12458.1| Toxin coregulated pilus biosynthesis outer membrane protein C
[Vibrio mimicus VM573]
Length = 489
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%)
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
+ L + Q+ + + + + L Q+ + I + S D GG
Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304
Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ V++ L + + P + + +++
Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364
Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
T V+ G + P +L GRI + + V +P+ ++
Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
TV + G + LA L KD+ Q G+ LL
Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454
>gi|15640848|ref|NP_230479.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121585745|ref|ZP_01675540.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae 2740-80]
gi|153822050|ref|ZP_01974717.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae B33]
gi|227081008|ref|YP_002809559.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae M66-2]
gi|229505558|ref|ZP_04395068.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae BX
330286]
gi|229510771|ref|ZP_04400250.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
B33]
gi|229517892|ref|ZP_04407336.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
RC9]
gi|229608577|ref|YP_002879225.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
MJ-1236]
gi|254847967|ref|ZP_05237317.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae MO10]
gi|255744631|ref|ZP_05418582.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholera
CIRS 101]
gi|262161237|ref|ZP_06030348.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
INDRE 91/1]
gi|298499040|ref|ZP_07008847.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae MAK 757]
gi|14548352|sp|P29481|TCPC_VIBCH RecName: Full=Toxin coregulated pilus biosynthesis outer membrane
protein C; AltName: Full=TCP pilus biosynthesis protein
tcpC; Flags: Precursor
gi|13377553|gb|AAK20788.1|AF325734_14 toxin-coregulated pilus biosynthesis outer membrane protein C
(lipoprotein) [Vibrio cholerae]
gi|9655282|gb|AAF93994.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121550108|gb|EAX60124.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae 2740-80]
gi|126520444|gb|EAZ77667.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae B33]
gi|227008896|gb|ACP05108.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae M66-2]
gi|229344607|gb|EEO09581.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
RC9]
gi|229350736|gb|EEO15677.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
B33]
gi|229357781|gb|EEO22698.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae BX
330286]
gi|229371232|gb|ACQ61655.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
MJ-1236]
gi|254843672|gb|EET22086.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae MO10]
gi|255737662|gb|EET93056.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholera
CIRS 101]
gi|262028987|gb|EEY47640.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
INDRE 91/1]
gi|297543373|gb|EFH79423.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae MAK 757]
Length = 489
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%)
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
+ L + Q+ + + + + L Q+ + I + S D GG
Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304
Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ V++ L + + P + + +++
Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364
Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
T V+ G + P +L GRI + + V +P+ ++
Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
TV + G + LA L KD+ Q G+ LL
Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454
>gi|167583028|ref|ZP_02375902.1| putative bacteriophage-related lipoprotein [Burkholderia
thailandensis TXDOH]
Length = 101
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLA 371
G++ PTV+ I L+++ E+S+ V P+ R+ T L G +VL
Sbjct: 1 GLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLG 59
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
GL++D + G L P + F +++ TE+ +
Sbjct: 60 GLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 96
>gi|171315562|ref|ZP_02904798.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria
MEX-5]
gi|171099399|gb|EDT44137.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria
MEX-5]
Length = 142
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 13/141 (9%)
Query: 280 ISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
+SGQS G Q S T SV D G++ PTV++ I +++
Sbjct: 1 MSGQSVRLNVGSQVPTLGSISYQGPSGTPVQSVQYQDAGLIFDVQPTVMAD-SIQVKLNE 59
Query: 335 EVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
E+S V + P+ R+ TTV L G +VL GL++D + P
Sbjct: 60 EMSSFVATSTGVNNSPTKNTRQMATTVNLKDGEVVVLGGLVQDTDTRSTNS-PG-----W 113
Query: 394 LGALFRNSRFNREETEIFIAA 414
L ++ TE+ +
Sbjct: 114 LPKFLDGHSASKGRTEVLLVL 134
>gi|254513594|ref|ZP_05125658.1| Bacterial type II and III secretion system protein
[Rhodobacteraceae bacterium KLH11]
gi|221532103|gb|EEE35100.1| Bacterial type II and III secretion system protein
[Rhodobacteraceae bacterium KLH11]
Length = 499
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 14/230 (6%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ + V + + +G + S T + + G ++ L + S
Sbjct: 271 IEVAVFFIDTSKTDTFAVGLEGSGTHGAISGAVGALTGSGVATLTNDFGSINFQALAKNS 330
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
T+A L A+ + S ++T T D G+
Sbjct: 331 SVVDYRLASTIAQSGTIAPIALPALVN----YVSSIGETKNEDGTTTTTVETDTIDTGIS 386
Query: 316 LHFTPTVLSPGRIGLRIQ------TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
+H P ++ RI L + TE+ + G +P R L G T++
Sbjct: 387 IHALPRLVRDNRIQLSLTLVQNDLTELEDFDTGDGTVQLPKIDQRAIQNDSLLAPGETLI 446
Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
L+G +D + G +G L + + + + P ++
Sbjct: 447 LSGYEQDKATRSNTGT---GIAKFIG-LGGRIKGEVGKVRMVVFVRPAII 492
>gi|110636420|ref|YP_676628.1| hypothetical protein Meso_4096 [Mesorhizobium sp. BNC1]
gi|110287404|gb|ABG65463.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 137
Score = 65.1 bits (157), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 42/91 (46%)
Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89
A ++ + I I +N+ I+++ V++ +P AD VV +T+ L
Sbjct: 8 ALFFAIMLAAAIAGAEARADIGIVMNQAKIIKLVRPADTVVIGNPEIADAVVQDAQTIVL 67
Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDI 120
GK G N++ + +G+ +++ + + R
Sbjct: 68 TGKGFGVTNIVALDVEGRPIMDEQVRVSRQT 98
>gi|289827429|ref|ZP_06546041.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
Length = 389
Score = 65.1 bits (157), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 46/142 (32%), Gaps = 12/142 (8%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342
Query: 274 EPTLTAISGQSASFTSGGQHLY 295
+P++ ++ A
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYT 364
>gi|15963890|ref|NP_384243.1| hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
gi|307315787|ref|ZP_07595301.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|307320422|ref|ZP_07599839.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|15073065|emb|CAC41524.1| Hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
gi|306893988|gb|EFN24757.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306898555|gb|EFN29228.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 138
Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKI-SIGLNKVIILQVPVDVQDVLVSDPTKAD 78
PS A + A + + +++ + ++ +L++ V V++ + AD
Sbjct: 3 MPSAAPRAALLATTALLAIAAPGGARAAEEMMRVYMDHARVLKLDRPVSKVIIGNAEVAD 62
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
V +T+ L G+N G N++++ DG M++ IL+ D
Sbjct: 63 ATVADAKTIVLTGRNFGTTNLVILDQDGNAMVDERILVSID 103
>gi|328545283|ref|YP_004305392.1| Possible pilus assembly protein (CpaC) [polymorphum gilvum
SL003B-26A1]
gi|326415025|gb|ADZ72088.1| Possible pilus assembly protein (CpaC) [Polymorphum gilvum
SL003B-26A1]
Length = 157
Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 43/89 (48%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ + +++ +++ + ++ V+V +P+ ADV +H T+ + GK G N+++
Sbjct: 23 AAAAETEPVAVTVDRAKVFRIEAPADTVIVGNPSIADVTMHDRFTVVVTGKTFGTTNLVI 82
Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRF 130
+ D + +++ I++ + R
Sbjct: 83 LDKDSQPIIDEVIVVRPPETDVVTVTRNL 111
>gi|330984052|gb|EGH82155.1| hypothetical protein PLA107_03384 [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 512
Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/201 (14%), Positives = 66/201 (32%), Gaps = 28/201 (13%)
Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
+ FSF + + L +T ++ ISG+ + SG + Y
Sbjct: 306 SSKGLELNIAAGDFSFLSAFNLLSTYGETKTTQSVSMDTISGEEVAIKSGQKIPYIDSIG 365
Query: 301 ST--------------GATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEP------ 339
G+T V D G+ L P + + + + + ++S
Sbjct: 366 VNSNNNNGYNNSSNSLGSTDVKDVDIGLELKLKPYYDNRSKLVSIGVDLKLSSLLRFVEL 425
Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
+ P + + V++ +G ++++ GL+ D + + + +L
Sbjct: 426 SAGNQIGTLTRPQTQEQSFTDNVKVRAGESMIIGGLMYDQLSDNRSNLAMLDD-----YK 480
Query: 398 FRNSRFNREETEIFIAATPFL 418
+ T +FI P +
Sbjct: 481 TASKSAKVTRTAMFILIRPTV 501
>gi|295690803|ref|YP_003594496.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
21756]
gi|295432706|gb|ADG11878.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
21756]
Length = 132
Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 41/80 (51%)
Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
N+ + + + + I L + ++DV+V DP ADV + + RT+ + GK G
Sbjct: 16 NVDAAAQSRPAALPLATGQAISLSLGGAMRDVVVGDPEVADVSIVNERTLVVLGKRPGVT 75
Query: 98 NVILIGHDGKQMLNLDILIE 117
N+++ G G+ + + +++
Sbjct: 76 NLLVFGAGGRALTDRQLIVS 95
>gi|227823967|ref|YP_002827940.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
gi|227342969|gb|ACP27187.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
Length = 141
Score = 64.4 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 21 PSVAKLPPIKEANAAVIN---ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
P K AA + ++ + + + ++ +L++ V V++ + A
Sbjct: 4 PLATKPVATLAFLAATLFGFFAAEKTDAAEQMMRVYMDHARVLKLDRPVSKVIIGNSDVA 63
Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
D V +T+ L G+N G N++++ DG +++ IL+ D
Sbjct: 64 DATVADSKTIVLTGRNFGTTNLVILDQDGNAIVDERILVSID 105
>gi|331650722|ref|ZP_08351760.1| bacterial type II and III secretion system domain protein
[Escherichia coli M605]
gi|331040432|gb|EGI12624.1| bacterial type II and III secretion system domain protein
[Escherichia coli M605]
Length = 127
Score = 64.4 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVR 354
++ SVT + G + P + I L I+ ++S V D P+ R
Sbjct: 10 SYQDNNRPVQSVTYRNSGAIFTVKP-FIYDDVINLDIEQQLSNFVKTTTGVNDSPTLIKR 68
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
T V + G IVL GL + LL P+ F + ++T+I +
Sbjct: 69 DIRTQVSVRDGEIIVLGGLASSKTTETNTAFSLL---PV----FSGHASDSDKTDIIVVL 121
Query: 415 TPFLV 419
V
Sbjct: 122 QARRV 126
>gi|222084464|ref|YP_002542993.1| hypothetical protein Arad_0357 [Agrobacterium radiobacter K84]
gi|221721912|gb|ACM25068.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 139
Score = 64.0 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 42/88 (47%)
Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
A A + + + ++ +L++ V V+V + AD V P+T+ L G
Sbjct: 14 AAMAGLMPQLSRAADDGMLRVYMDHARVLKLDRPVSKVIVGNAQVADATVADPKTIVLTG 73
Query: 92 KNVGQANVILIGHDGKQMLNLDILIERD 119
++ G N++L+ DG +++ IL+ D
Sbjct: 74 RSFGTTNIVLLDADGNAIVDERILVSID 101
>gi|302381761|ref|YP_003817584.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides
ATCC 15264]
gi|302192389|gb|ADK99960.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides
ATCC 15264]
Length = 139
Score = 64.0 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 41/97 (42%)
Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
A V + + + + +++G+++ + + V+V +P ADV V
Sbjct: 9 AARSAAVLAGVTCLFAAGMAQAQSLNVGIDRSARVALRGSAASVIVGNPAIADVTVVDAN 68
Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
T+++ GK G VI + G+ + ++++
Sbjct: 69 TLFVTGKGYGVTEVIAVDGLGRTIYQGEVIVSGGSTG 105
>gi|154250684|ref|YP_001411508.1| hypothetical protein Plav_0228 [Parvibaculum lavamentivorans DS-1]
gi|154154634|gb|ABS61851.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
Length = 172
Score = 64.0 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 44/100 (44%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
A A V + + +NK L + V+V +P+ ADV V + +Y
Sbjct: 15 YTAAIGAACAGLAVSASQAADFQVEMNKSKALHLGQPASTVMVGNPSIADVTVEGSKLLY 74
Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
+ G++ G+ N+I + G+ +L++++ + A R
Sbjct: 75 VMGRSYGRTNIIALDSSGETILDINVNVVSQSASTVTLTR 114
>gi|85713500|ref|ZP_01044490.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A]
gi|85699404|gb|EAQ37271.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A]
Length = 163
Score = 64.0 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 11/117 (9%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
+ S+ S + P A + IS+ +++ ++++P +
Sbjct: 9 PSRASVIGMSLAAVMLLGPVAAPAEV-----------TSEPISVNVDQAKLVRLPGHIAT 57
Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
++V +P ADV + + + GK G NVI + G +++ I +E +
Sbjct: 58 IVVGNPLIADVTLQPGGLVVVTGKGYGATNVIAMDRAGSILVDRVIQVEGPSDQVVT 114
>gi|329917057|ref|ZP_08276428.1| type II and III secretion system protein [Oxalobacteraceae
bacterium IMCC9480]
gi|327544637|gb|EGF30102.1| type II and III secretion system protein [Oxalobacteraceae
bacterium IMCC9480]
Length = 537
Score = 63.6 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 42/258 (16%), Positives = 75/258 (29%), Gaps = 47/258 (18%)
Query: 199 KVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR--- 253
V I +V G Q + + G + + A+ +
Sbjct: 231 DVNIFQVDLKDNSDTGIQWNKLAWAGTPGLAANPASTATTAVTPAVAGTTAATTAATNIG 290
Query: 254 --------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
FS + +++ L+ ++ ++ P L ISG S G
Sbjct: 291 NAVSGGIAGLGLGLVLSSSRFSVDMLINFLQTQGNVKAISRPRLAVISGTKGSLRVGQST 350
Query: 294 LYKTVSSSTGATSVTTH-------DYGVVLHFTPTVLSPG---RIGLRIQTEVS--EPVI 341
Y + + +TSV G+ L RIGL I VS +
Sbjct: 351 TYVSKVGTNFSTSVNQVTTETRDLKTGLDLALFGDFSDNTVYTRIGLSISEIVSLNKFTA 410
Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
+P+ R+ +T + G I+L G+ + G S
Sbjct: 411 LGTDLTLPTTADREINTVIRARPGDMILLGGITINRDASDIRR----------GVTQNGS 460
Query: 402 RFNREETEIFIAATPFLV 419
+E+ +A +V
Sbjct: 461 SDTVTRSELVLALKSKVV 478
>gi|153842373|ref|ZP_01993497.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
(CMK)(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase) [Vibrio parahaemolyticus AQ3810]
gi|149745386|gb|EDM56637.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
(CMK)(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase) [Vibrio parahaemolyticus AQ3810]
Length = 356
Score = 63.6 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/209 (10%), Positives = 58/209 (27%), Gaps = 35/209 (16%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + + T + ++++ L+I + QV
Sbjct: 59 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 117
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
++ I + + ++G + T + + +
Sbjct: 118 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGDG 177
Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ F V + + L AL++ + ++ P L +
Sbjct: 178 VGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 237
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHD 311
+ A G + Y SSS
Sbjct: 238 KPAYIEQGTEIPYLESSSSGATALQNYAH 266
>gi|308094756|ref|ZP_07663037.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AN-5034]
gi|308089670|gb|EFO39365.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AN-5034]
Length = 449
Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/203 (10%), Positives = 59/203 (29%), Gaps = 33/203 (16%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + + T + ++++ L+I + QV
Sbjct: 243 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 301
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
++ I + + ++G + T + + +
Sbjct: 302 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGVG 361
Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
+ F V + + L AL++ + ++ P L + +
Sbjct: 362 IDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKP 421
Query: 285 ASFTSGGQHLYKTVSSSTGATSV 307
A G + Y SSS +
Sbjct: 422 AYIEQGTEIPYLESSSSGATSVT 444
>gi|99035082|ref|ZP_01314871.1| hypothetical protein Wendoof_01000288 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 413
Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 19/179 (10%)
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
+ ++ +N + QV ++ I EV D G +
Sbjct: 235 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLQDGTKSII 284
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
+ ++ ++ L++ ++ P + AI+ Q A + H+Y
Sbjct: 285 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 344
Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDM 348
S+ T T + + GVVL P++ I + I +S D+
Sbjct: 345 DIQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDI 403
>gi|159184220|ref|NP_353258.2| hypothetical protein Atu0226 [Agrobacterium tumefaciens str. C58]
gi|159139548|gb|AAK86043.2| PilQ [Agrobacterium tumefaciens str. C58]
Length = 127
Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+ + +N +L++ V V+V + AD V T+ L G++ G N++L+ +G +
Sbjct: 22 LRVSMNHARVLRLDRPVSKVIVGNSKVADATVADATTIVLTGRSFGTTNLVLLDAEGNPI 81
Query: 110 LNLDILIERD 119
++ IL+ D
Sbjct: 82 VDERILVSID 91
>gi|325291663|ref|YP_004277527.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3]
gi|325059516|gb|ADY63207.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3]
Length = 136
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
+ + +N +L++ V V+V + AD V T+ L G++ G N++L+ +G +
Sbjct: 31 LRVSMNHARVLRLDRPVSKVIVGNSKVADATVADATTIVLTGRSFGTTNLVLLDAEGNPI 90
Query: 110 LNLDILIERD 119
++ IL+ D
Sbjct: 91 VDERILVSID 100
>gi|281356847|ref|ZP_06243337.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
gi|281316405|gb|EFB00429.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
Length = 478
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/272 (15%), Positives = 79/272 (29%), Gaps = 51/272 (18%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------PSKSFAADFGGKFVSEGGD 244
Q+T T+ EVR L+ IG ++ + G +F GG +
Sbjct: 188 RPAPQITFNFTLYEVRESTLRDIGIEYLAWKNGPGLNIFSVGWDAFGLTSGGTAAMQAMS 247
Query: 245 FSVKGVLDRFSFET-VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
+ G L F+ + L+++ ++T + S T + + +
Sbjct: 248 GPLGGFLFAPQFDASFIRLLQQSGKAEIKNSASITVSN----SDTQSSELYFNPQFENIT 303
Query: 304 ATSVTTHDYGV-VLHFTPTVLS------PGRIGLRIQTEVSE------------------ 338
+ GV L TP + + L
Sbjct: 304 KSDNDKTSVGVGTLGLTPGLNQLYLKIIQPIVNLHYGLPQDGYPAAEEFSMNVYKPGAYA 363
Query: 339 ---------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
V+ N + + +LA +D +
Sbjct: 364 KYPGTVFFGYDVQAANVVERNNVGAELVETSQIVGNTLIQLNHETILAEWNRDQEVEQTI 423
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
G+P L IPIL LF + + E+T +++ T
Sbjct: 424 GVPFLMDIPILKYLFSTTTTSTEKTRFYLSVT 455
>gi|241589623|ref|YP_002979648.1| hypothetical protein Rpic12D_4759 [Ralstonia pickettii 12D]
gi|240868335|gb|ACS65994.1| conserved hypothetical protein [Ralstonia pickettii 12D]
Length = 596
Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/316 (13%), Positives = 91/316 (28%), Gaps = 39/316 (12%)
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS---SKKVMNLLN 189
D+ I+ E + + V RA +S S + + +++
Sbjct: 277 DAPIKSEATNISEVESVKSSIGTIMTRAGSISADPALGSITLTDTKEAVDKADEIVKFST 336
Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFV 239
V +++ + +V Q + S S G
Sbjct: 337 SVLSKMVLVRLQLIQVTTKDNGQAAVNWNAVMTKALEHIPGFQLSSISPVSLIGQSGGLN 396
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
+ G + ++ ALE + T E L+ + + + Y + +
Sbjct: 397 NSGSIGLNITSGGFTGTQAIVQALEELGRVSTTTEIPLSIQNRHGMYYNVRQTYSYVSGT 456
Query: 300 SST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341
+ + G L P+V S G I + + + S
Sbjct: 457 TPATATAGGTGGVPGITTAQDQVGFKLMIYPSVTSRGSINMTVSIDQSTLQGLDKFTSGS 516
Query: 342 --GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI-PLLSKIPILGALF 398
+P+ A + +GGT++L G + Q + G+ P +P++
Sbjct: 517 GANQQTVQLPNTNGEGATIDAIVNNGGTLILTGFEQKQNQFDRRGLAP---DVPLIAG-- 571
Query: 399 RNSRFNREETEIFIAA 414
+ + + T I
Sbjct: 572 GSKAASTQRTTTIIIL 587
>gi|301167753|emb|CBW27337.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 459
Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 6/185 (3%)
Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
+ S G +S ++ L+ F E +++ + + ++A P +
Sbjct: 271 SASSEVLALGLDKISNNLYALIRNDLNSFIGENIINFENKRVKLSSIATPEIITRVNNEG 330
Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
+ G + + S T+ G+ + T L I+TE+S P+ A
Sbjct: 331 EISIGSEIPFTRKSKEEYVTN--WKFAGLKIK-TKLEKENNEYFLNIETELSRPMQSSGA 387
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
K + V++ G ++ + + IQ +P LSKIP+LG LF +S
Sbjct: 388 ST---ISSNKTKSRVKITQGKSLKITDIGHQGIQHQNTSLPYLSKIPLLGKLFTSSSEIE 444
Query: 406 EETEI 410
I
Sbjct: 445 TYKNI 449
>gi|254293210|ref|YP_003059233.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814]
gi|254041741|gb|ACT58536.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814]
Length = 166
Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 41/89 (46%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
+ +I + +++ +L + + ++V +P A V VH T+ L G + G N+I
Sbjct: 58 AANPAQENEIDVYIDQTQLLHLGTPMGSIIVGNPDVATVAVHDNHTLLLTGLSFGTTNLI 117
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRR 129
++ G+ + +++ +T+ R
Sbjct: 118 VLDSVGRPIHKSQLMVSERTGSGTLTVAR 146
>gi|149177451|ref|ZP_01856055.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797]
gi|148843784|gb|EDL58143.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797]
Length = 1668
Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
P GGT++L G+ + + G+P+L+K+P + LF+N+ RE + + TP ++
Sbjct: 1600 PDGGTVLLGGVKRLREGRSMAGVPILNKLPYVSRLFKNTGVGRETESLMMMVTPRII 1656
>gi|329891000|ref|ZP_08269343.1| pilQ [Brevundimonas diminuta ATCC 11568]
gi|328846301|gb|EGF95865.1| pilQ [Brevundimonas diminuta ATCC 11568]
Length = 129
Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 46/99 (46%)
Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
+ + AA++ ++ + + + + + L++ +Q+ V+V++P ADV V
Sbjct: 1 MRPASLLTGLAALLVLTAPAVAQERPLDVKLDQATRVQLRAPAGSVIVANPRIADVTVTD 60
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
RT+++ GK+ G +I + G+ + + +
Sbjct: 61 ARTLFITGKSYGLTEIIAVDALGRPLFQRQVAVSPGETG 99
>gi|299531109|ref|ZP_07044522.1| hypothetical protein CTS44_09997 [Comamonas testosteroni S44]
gi|298721066|gb|EFI62010.1| hypothetical protein CTS44_09997 [Comamonas testosteroni S44]
Length = 596
Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 53/329 (16%), Positives = 103/329 (31%), Gaps = 51/329 (15%)
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK------KVMN 186
SN R++ + + + ++Q AV S ++Q ++ + +V+
Sbjct: 274 QSNFRIDEAGSLDIFNSFMNSLQQMVAAVPGSSIAINQGTGRFAVTTTKEAMQRIRQVVK 333
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------- 239
N + QV +++ I + + G + +S D V
Sbjct: 334 SENESLTRQVRIQMDIYSITTKDGDEKGVNWGVVLNSLTSKWGATIDSPTSLVGDTAGQI 393
Query: 240 -------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
+ GG S V + + AL + A++ Q A T+
Sbjct: 394 GLTILSLANGGSPSSGTVGRWGGTQAAIQALNEYGTNIQHRPIEMQAMNRQWARKTNLND 453
Query: 293 HLYKTVS---------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
Y + + S + G P +L G + LR ++ V
Sbjct: 454 RSYVSETLPSTSTAAGSGSVGMKTANVTTGDRFMIQPAILDNGSVQLRFGISMTNLVAMT 513
Query: 344 NAGDMPSYRVRKA----------DTTVELPSGGTIVLAGLLK----DDIQQLKEGIPLLS 389
+ + +TV L +G +VL G+ + D+ ++L EG LL+
Sbjct: 514 ETTSGQGTSISRVQNPERSGIDDQSTVMLKAGQVMVLTGMARYKAKDNRRRLAEGWSLLA 573
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
+ + E E + P L
Sbjct: 574 G--------GSDAQSLEREEFLVVVRPVL 594
>gi|75674503|ref|YP_316924.1| hypothetical protein Nwi_0305 [Nitrobacter winogradskyi Nb-255]
gi|74419373|gb|ABA03572.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 163
Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
R+ +++ + ++ A P + + IS+ +++ ++++
Sbjct: 6 VRGRSRVSVIGVSFAAAILLGAATAPAE--------------VISEPISVNVDQAKLVRL 51
Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
P + ++V +P ADV + + + GK G N+I + G M++ I +E
Sbjct: 52 PGPIATIVVGNPLIADVTLQPGGLVVVTGKGYGATNMIAMDRAGSIMVDRVIQVEGPSDQ 111
Query: 123 LEM 125
+
Sbjct: 112 VVT 114
>gi|153930563|ref|YP_001393255.1| PilN family type IV pilus biogenesis protein [Yersinia
pseudotuberculosis IP 31758]
gi|152958107|gb|ABS45570.1| type IV pilus/secretion system protein, PilN family [Yersinia
pseudotuberculosis IP 31758]
Length = 568
Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 37/256 (14%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGV 250
QV KV I + ++ +G I S + A+ G G F +
Sbjct: 319 SKQVLFKVVIYTITSEVSDNVGIDWDIIFKSLSGKYGINLASSSGLSTDLANGSFEILDT 378
Query: 251 LDR-----FSFETVLHALERATAIRTLAEPTLTAISGQSA------SFTSGGQHLYKTVS 299
+ +L AL + + L + +A T + ++
Sbjct: 379 ATGKAAQFAGSQFMLQALSKQANVTDTKTLNLMTTNLATAGLLIGKQTTYLQRSSITSIG 438
Query: 300 SSTGATSVT-----THDYGVVLHFTPTVLSPG-RIGLRIQTEVS--------EPVIGVNA 345
S + V G + P +L+ ++ L + +++ + +
Sbjct: 439 SGNSSEPVQSLEPGQITTGTNIVILPKILNDNEKMMLTMMLDITSLNKLRKIDTADKKLS 498
Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP---ILGALFRNSR 402
+ P + L G TI+++G + K+G+ P I+G N
Sbjct: 499 IEGPDSDSSSIPQRIWLKPGETILMSGFEQIVKDGSKQGM---GD-PNNIIMG---GNMS 551
Query: 403 FNREETEIFIAATPFL 418
+ ++ I TP L
Sbjct: 552 GSDKKQSFVITITPIL 567
>gi|331013472|gb|EGH93528.1| type II and III secretion system protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 234
Score = 62.1 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/228 (13%), Positives = 64/228 (28%), Gaps = 19/228 (8%)
Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
G + + R T S+ + + N A QV V + E
Sbjct: 7 GAMLSTSPPDRMYLSPSTGTLTVTDRPDVLSNIETYLAKTNHAITQQVLFNVKVFEATLT 66
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-----FETVLHAL 263
Q+ + +S + +S G++D + ++ A+
Sbjct: 67 DTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANSAWAGSNAIIQAI 126
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--------GVV 315
I + P++T ++ Q A G Y + SV + G
Sbjct: 127 AEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSSTAITPGTITSGFN 186
Query: 316 LHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
+ P ++ I + + ++ +P+Y +
Sbjct: 187 MTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 234
>gi|220922544|ref|YP_002497846.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
gi|219947151|gb|ACL57543.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
Length = 217
Score = 62.1 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 9/136 (6%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
M + L + + + I + I V I VP + DVL
Sbjct: 21 MGKVGLIAILVTALSFSAVFAQEPVNI--------PKDILRINAGSVEIFAVPEPMSDVL 72
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
V + ADV + S R + + K G+ N+IL+G + K + LD+L+ + +R+
Sbjct: 73 VGESRIADVAIISDRRIAVTAKAPGRTNIILMGENRKLLSKLDVLVFKAEDENGNPIRKQ 132
Query: 131 IADSNIRVEMVSDTVV 146
+ I + V+
Sbjct: 133 -SGKQINTYYENGQVI 147
>gi|329847248|ref|ZP_08262276.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
gi|328842311|gb|EGF91880.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
Length = 158
Score = 62.1 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 22/133 (16%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M + R ++ + L ++ P++A P +++ N + +
Sbjct: 1 MTFSIRAALSVTAFGLMAAVPALAGQP----------------------VTVEKNHTLRV 38
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
+ V+V +P ADV V RT+Y+ GK G + V + G DG+ + + ++ +
Sbjct: 39 TLVAPAGTVVVGNPDIADVTVVDSRTLYIVGKGFGSSAVNVAGRDGRSLFDGEVTVTAPK 98
Query: 121 AHLEMTLRRFIAD 133
+
Sbjct: 99 RGAITVYKGLKPS 111
>gi|221067014|ref|ZP_03543119.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
gi|220712037|gb|EED67405.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
Length = 596
Score = 62.1 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 54/329 (16%), Positives = 109/329 (33%), Gaps = 51/329 (15%)
Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK------KVMN 186
SN R++ + + + ++Q AV S ++Q ++ + +V+
Sbjct: 274 QSNFRIDEAGSLDIFNSFMNSLQQMVAAVPGSSIAINQGTGRFAVTTTKEAMQRIRQVVK 333
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKF 238
N + QV +++ I + + G + G++ S D G+F
Sbjct: 334 SENESLTRQVRIQMDIYSITTKDGDEKGVNWGVVLNSLTSKWGATIDSPTSLVGDTAGQF 393
Query: 239 ------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
++ GG+ + V + + AL + A++ Q A T+
Sbjct: 394 GMTILSLANGGNPNSGTVARWGGSQAAIQALNEYGTNIQHRPIEMQAMNRQWARKTNLND 453
Query: 293 HLYKTVS---------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
Y + + S + G P +L G + LR ++ V
Sbjct: 454 RSYVSETLPSTSTAAGSGSVGMKTANVTTGDRFMIQPAILDNGSVQLRFGISMTNLVAMT 513
Query: 344 NAGDMPSYRVRKA----------DTTVELPSGGTIVLAGLLK----DDIQQLKEGIPLLS 389
+ + +TV L +G +VL G+ + D+ ++L EG LL+
Sbjct: 514 ETTSGQGTSISRVQNPERSGIDDQSTVMLKAGQVMVLTGMARYKAKDNRRRLAEGWSLLA 573
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
+ + E E + P L
Sbjct: 574 G--------GSDAQSLEREEFLVVVRPVL 594
>gi|332161774|ref|YP_004298351.1| Bacterial type II and III secretion system protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|332161787|ref|YP_004298364.1| Bacterial type II and III secretion system protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325666004|gb|ADZ42648.1| Bacterial type II and III secretion system protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325666017|gb|ADZ42661.1| Bacterial type II and III secretion system protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
Length = 298
Score = 61.7 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
+N +++A DQV ++ + E + F + G + GG
Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240
Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
F G+ D L A++ + + ++ P + SGQ+ + G + T +
Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGN 296
>gi|332765291|gb|EGJ95516.1| hypothetical protein SFK671_5251 [Shigella flexneri K-671]
Length = 422
Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 67/225 (29%), Gaps = 15/225 (6%)
Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
G + +L + NI ++ D+ V + ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268
Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
ET N + ++ L+IA + L + I ++ + L +G
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDIAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ SF FG F + LD F + AL + ++ P +
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378
Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
A F + V +S+ YG +++ P G
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSVSGT 421
>gi|150398537|ref|YP_001329004.1| hypothetical protein Smed_3348 [Sinorhizobium medicae WSM419]
gi|150030052|gb|ABR62169.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 140
Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
+ + + ++ +L++ V V++ + AD V +T+ L G+N G N++
Sbjct: 27 SGARAAEEMMRVYMDHARVLKLDRPVSKVIIGNSDVADATVADAKTIVLTGRNFGTTNLV 86
Query: 101 LIGHDGKQMLNLDILIERD 119
++ DG M++ IL+ D
Sbjct: 87 ILDQDGNAMVDERILVSID 105
>gi|307943136|ref|ZP_07658481.1| PilQ [Roseibium sp. TrichSKD4]
gi|307773932|gb|EFO33148.1| PilQ [Roseibium sp. TrichSKD4]
Length = 161
Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 40/76 (52%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
+ I + +++ +++ + ++ V+V +P ADV +H T+ + GK+ G N
Sbjct: 20 VGSSAIAQEGPVTVMVDRAKVFRIQEPASTVIVGNPFIADVAMHDASTVVITGKSYGSTN 79
Query: 99 VILIGHDGKQMLNLDI 114
++++ + + +++ I
Sbjct: 80 LVILDDNNEPIIDEVI 95
>gi|323137421|ref|ZP_08072499.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC
49242]
gi|322397408|gb|EFX99931.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC
49242]
Length = 180
Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 8/158 (5%)
Query: 17 FSSNPSVAKLPPIKEANAAVI-NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
+ PS + + + +++ K + I + L+ I+++P Q +++ +P
Sbjct: 23 MTLVPSFFRGALLLAFGVFGLESMATDASAKERPIRVELDYARIVRIPPGAQTLVIGNPL 82
Query: 76 KADVVVHSPRTMYLF-GKNVGQANVILIGHDGKQMLNLDILIERDIAHL--EMTLRRFIA 132
ADV + + + GK+ G N+I++ G Q+ + + L + + R
Sbjct: 83 VADVTMLRNSQLMVITGKSFGTTNLIVLDRTGAQVGESIVTVAPAEDKLVVQRGMHRESY 142
Query: 133 DSNIR----VEMVSDTVVLHGMVRTIQDSQRAVELSET 166
N R V++ D+ + + ++ A +
Sbjct: 143 SCNPRCAKAVDLADDSQYMSQTIDAVKAHDGAATSTRR 180
>gi|308094760|ref|ZP_07663039.1| fimbrial assembly protein [Vibrio parahaemolyticus AN-5034]
gi|308089697|gb|EFO39392.1| fimbrial assembly protein [Vibrio parahaemolyticus AN-5034]
Length = 73
Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
+ ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S N ++E
Sbjct: 2 AIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSYENVGKSE 61
Query: 410 IFIAATPFLV 419
+ I TP +V
Sbjct: 62 LLIFVTPKVV 71
>gi|148258230|ref|YP_001242815.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1]
gi|146410403|gb|ABQ38909.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1]
Length = 145
Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 39/76 (51%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
I++ +++ ++++P V ++V +P ADV + S + + GK+ G N I + G+ +
Sbjct: 16 IAVNVDQAKLVKLPDRVATLVVGNPMIADVTLQSGGIIVVTGKSYGATNFIAMDRGGQVL 75
Query: 110 LNLDILIERDIAHLEM 125
++ I + L
Sbjct: 76 VDRQIQVAGPTDRLVT 91
>gi|163785750|ref|ZP_02180256.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
gi|159878981|gb|EDP72979.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
Length = 363
Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 71/234 (30%), Gaps = 33/234 (14%)
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
+ + + + I + +R ++NI V ++ + ++
Sbjct: 142 QLLQYTQVQQNKQIKS-QQAPKRISPNANIN------------TVNISRNRKEKPKIIAE 188
Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
+ + + + NL+ + QV + I EV + LK+IG + I GS
Sbjct: 189 KTTNTLVIYANRLEYEAIKNLVENLDKQKKQVLITALITEVSQKALKEIGVRWQILGSYG 248
Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH--------------ALERATAIR 270
G + G + G GVL + L+R T
Sbjct: 249 GAAFKGGLSTEGFYNLLGSTNFAAGVLSSSGRNVSISGNTLFFPDLLFLLSLLDRGTGFN 308
Query: 271 TLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTP 320
++ P + + A+ + K + + + G+ L P
Sbjct: 309 IISSPKILTMDNTEATINVSQVTPFASSLKFDVNGNPIINYDYKEVGLKLKVLP 362
>gi|325275755|ref|ZP_08141633.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
gi|324099115|gb|EGB97083.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
Length = 76
Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFN 446
+PILGA FRNS R+ETE+ + TP LV+P+A+ P +H + FF
Sbjct: 5 LPILGAFFRNSTMRRDETELLMIVTPHLVQPLAVNAKLPPLPGEHLRNYDPSWGRLFFLE 64
Query: 447 RVN 449
N
Sbjct: 65 NGN 67
>gi|316933043|ref|YP_004108025.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1]
gi|315600757|gb|ADU43292.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1]
Length = 162
Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 42/95 (44%)
Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
+ + + G IS+ +++ ++++P D+ ++V +P ADV + + +
Sbjct: 16 PSLLLGLLSASATAGTEDSISVNVDQAKLIRLPQDIATIVVGNPLIADVTLQPGGMVVVT 75
Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
GK G NVI + G + + I +E +
Sbjct: 76 GKGYGATNVIAMDRKGAIVADRLIQVEGPSDKVVT 110
>gi|86748911|ref|YP_485407.1| hypothetical protein RPB_1788 [Rhodopseudomonas palustris HaA2]
gi|86571939|gb|ABD06496.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 164
Score = 61.3 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 43/88 (48%)
Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
++S G IS+ +++ ++++P ++ ++V +P ADV + + + GK G
Sbjct: 24 SLSVASAGTEDTISVSVDQAKLIRLPQNISTLVVGNPLIADVAMQPGGMVVVTGKGYGAT 83
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEM 125
NVI + G + + I +E + +
Sbjct: 84 NVIAMDRKGAVIADRLIQVEGPMDKVVT 111
>gi|157165775|ref|YP_001467405.1| protein yitk [Campylobacter concisus 13826]
gi|157101562|gb|ABV23530.1| hypothetical protein CCC13826_2274 [Campylobacter concisus 13826]
Length = 128
Score = 60.9 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 36/77 (46%)
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
E ++ ++ P ++ ++ L G +VL+G+ K + + G+P+L I +L L
Sbjct: 49 EDILSQSSSFTPIVSKKELKSSYSLKRGDVLVLSGINKKTNAKQRNGVPVLKDIWLLKYL 108
Query: 398 FRNSRFNREETEIFIAA 414
F + + + + +
Sbjct: 109 FSVEQDSEINSVLTLTI 125
>gi|121726048|ref|ZP_01679347.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae V52]
gi|121631530|gb|EAX63900.1| toxin co-regulated pilus biosynthesis outer membrane protein C
[Vibrio cholerae V52]
Length = 250
Score = 60.9 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 64/211 (30%), Gaps = 9/211 (4%)
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
+ L + Q+ + + + + L Q+ + I + S D GG
Sbjct: 7 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 65
Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSG---GQHLYKTVSS 300
+ V++ L + + P + +
Sbjct: 66 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 125
Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
T V+ G + P +L GRI + + V +P+ ++
Sbjct: 126 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 185
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
TV + G + LA L KD+ Q G+ LL
Sbjct: 186 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 215
>gi|213621880|ref|ZP_03374663.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 52
Score = 60.9 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
+ + L +G +++L G + + IPLL IP++G LFRN
Sbjct: 2 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQ 51
>gi|218530650|ref|YP_002421466.1| hypothetical protein Mchl_2699 [Methylobacterium chloromethanicum
CM4]
gi|218522953|gb|ACK83538.1| conserved hypothetical protein [Methylobacterium chloromethanicum
CM4]
Length = 159
Score = 60.9 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
+ S L ++ + + V E +S+ ++ ++++P Q
Sbjct: 1 MPRLRSALLPATASAAIMMVVF------VGQAHANEPVPQGIVSVQVDNAKVIRLPEKTQ 54
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
V+V +P AD+ + + L GK+ G N+I + G + I ++ A +
Sbjct: 55 TVVVGNPMIADITLQKNGVVVLTGKSFGTTNLIALDGKGAMLAESTISVQAPQASI 110
>gi|146338128|ref|YP_001203176.1| hypothetical protein BRADO1025 [Bradyrhizobium sp. ORS278]
gi|146190934|emb|CAL74939.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
Length = 145
Score = 60.9 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 39/76 (51%)
Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
I++ +++ ++++P V ++V +P ADV + S + + GK+ G N I + G+ +
Sbjct: 16 IAVNVDQAKLVKLPDRVATLVVGNPMIADVTLQSGGIIVVTGKSYGATNFIAMDRGGQVL 75
Query: 110 LNLDILIERDIAHLEM 125
++ I + L
Sbjct: 76 IDRQIQVAGPTDRLVT 91
>gi|114705461|ref|ZP_01438369.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506]
gi|114540246|gb|EAU43366.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506]
Length = 156
Score = 60.9 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
+ + L + V P + EA + I+I ++ ILQ+ V+
Sbjct: 6 LRAGLLGTLAILVGSTPAVAEAKKDM-------------IAIAVDHARILQIDRGAGTVI 52
Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
+ +P D+ V S + L GK+ G NVI++ D +++ + ++
Sbjct: 53 IGNPAIVDIEVLSEERLVLTGKSYGITNVIILDRDNSVLMDEQVAVQTF 101
>gi|189348545|ref|YP_001941741.1| type II secretory pathway component [Burkholderia multivorans ATCC
17616]
gi|189338683|dbj|BAG47751.1| type II secretory pathway component [Burkholderia multivorans ATCC
17616]
Length = 518
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/276 (15%), Positives = 84/276 (30%), Gaps = 40/276 (14%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229
+ A + K++ N QV + V ++ + Q G + ++ +
Sbjct: 251 DTKEAADNIGKLLKHENAISTRQVAITVRTLQIALNKGSQAGVNADVVFNAMHAGLARYA 310
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ + GG V + F V++AL + T ++G S
Sbjct: 311 ISFTSPTSLATGGGAVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVS 370
Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
+L T SS T+ + G+ ++ P V +I L +
Sbjct: 371 VASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 430
Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383
S+ + S + ++ D T+ L G T+VL +
Sbjct: 431 SSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTTNT 490
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GI L +N+ +T I +V
Sbjct: 491 GIAGL-----------TGSWNKSKTFQVIMLKATVV 515
>gi|27376555|ref|NP_768084.1| hypothetical protein blr1444 [Bradyrhizobium japonicum USDA 110]
gi|27349696|dbj|BAC46709.1| blr1444 [Bradyrhizobium japonicum USDA 110]
Length = 165
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 38/81 (46%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
I++ +++ ++++P V ++V +P ADV + + + GK G N I +
Sbjct: 31 STADTIAVNVDQAKLVRLPGKVATIVVGNPLIADVTLQPGGMIVVTGKGYGATNFIALDR 90
Query: 105 DGKQMLNLDILIERDIAHLEM 125
G+ +++ I +E L
Sbjct: 91 GGEILVDRQIQVEGPSDRLVT 111
>gi|163756987|ref|ZP_02164094.1| type II general secretion pathway (GSP) D protein [Kordia algicida
OT-1]
gi|161323106|gb|EDP94448.1| type II general secretion pathway (GSP) D protein [Kordia algicida
OT-1]
Length = 612
Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
V ++V + +V + + + G I + S S + + + G S
Sbjct: 479 VLIEVMLIDVSKLSVVETGISWGIGDEPTQTSGSLFPTTNLTLGANTVNRVIGGFDGFGS 538
Query: 256 FE---------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
F + A+E+ I+ + P ++ ++G A+ ++G Y +
Sbjct: 539 FNLGKVVPEFFANISAMEQDGDIKIRSTPKISTLNGHRATLSNGTTSYYAVTQRN 593
>gi|161522585|ref|YP_001585514.1| type II secretory pathway component PulD-like protein [Burkholderia
multivorans ATCC 17616]
gi|160346138|gb|ABX19222.1| type II secretory pathway component PulD-like protein [Burkholderia
multivorans ATCC 17616]
Length = 534
Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 44/276 (15%), Positives = 84/276 (30%), Gaps = 40/276 (14%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229
+ A + K++ N QV + V ++ + Q G + ++ +
Sbjct: 267 DTKEAADNIGKLLKHENAISTRQVAITVRTLQIALNKGSQAGVNADVVFNAMHAGLARYA 326
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ + GG V + F V++AL + T ++G S
Sbjct: 327 ISFTSPTSLATGGGAVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVS 386
Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
+L T SS T+ + G+ ++ P V +I L +
Sbjct: 387 VASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 446
Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383
S+ + S + ++ D T+ L G T+VL +
Sbjct: 447 SSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTTNT 506
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GI L +N+ +T I +V
Sbjct: 507 GIAGL-----------TGSWNKSKTFQVIMLKATVV 531
>gi|86355860|ref|YP_467752.1| hypothetical protein RHE_CH00201 [Rhizobium etli CFN 42]
gi|86279962|gb|ABC89025.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 102
Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
++ +L++ V V+V + AD V +T+ L G++ G N++L+ DG +L+
Sbjct: 1 MDHARVLKLDRPVSKVIVGNAQVADATVADAKTIVLTGRSFGTTNLVLLDADGNAILDER 60
Query: 114 ILIERD 119
IL+ D
Sbjct: 61 ILVSID 66
>gi|166219|gb|AAA32222.1| gene IV protein [Enterobacteria phage f1]
Length = 51
Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
GL G+P LSKIP++G LF + + EE+ +++ +V+ +
Sbjct: 1 GLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 51
>gi|166216|gb|AAA32221.1| gene IV [Enterobacteria phage f1]
Length = 60
Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
+ + R TTV L G T++L GL G+P LSKIP++G
Sbjct: 2 DSLSSSTQASDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIG 59
>gi|134287561|ref|YP_001109727.1| Type II secretory pathway component PulD-like protein [Burkholderia
vietnamiensis G4]
gi|134132211|gb|ABO59946.1| Type II secretory pathway component PulD-like protein [Burkholderia
vietnamiensis G4]
Length = 534
Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 45/276 (16%), Positives = 85/276 (30%), Gaps = 40/276 (14%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229
+ A + K++N N QV + V ++ + Q G + ++ +
Sbjct: 267 DTKEAADNIGKLLNHENAISTRQVAITVRTLQIALNKGSQAGMNADVVFNAMHAGLARYA 326
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ + GG V + F V++AL + T ++G S
Sbjct: 327 ISFMSPTSLATGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVS 386
Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
+L T SS T+ + G+ ++ P V +I L +
Sbjct: 387 IASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 446
Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383
S+ + S + ++ D T+ L G T+VL +
Sbjct: 447 SSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTTNT 506
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GI L +N+ +T I +V
Sbjct: 507 GIAGL-----------TGSWNKAKTFQVIMLKATVV 531
>gi|92116017|ref|YP_575746.1| hypothetical protein Nham_0395 [Nitrobacter hamburgensis X14]
gi|91798911|gb|ABE61286.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
Length = 161
Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 11/117 (9%)
Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
+ S+ S ++ P A IS+ +++ ++++P +
Sbjct: 9 RSRASVVGLSLATAILLGPTAALAEV-----------TSDPISVNVDQAKLVKLPGHIAT 57
Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
++V +P ADV + + + GK G NVI + G +++ I +E +
Sbjct: 58 IVVGNPLIADVTLQPGGLVVVTGKGYGATNVIAMDRAGSILVDRVIQVEGPSDQVVT 114
>gi|28173601|gb|AAO32809.1| XpsD [Xanthomonas oryzae pv. oryzae]
Length = 65
Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
IP LSK+P++GALF + N E+ + TP +V+ ++ D Y
Sbjct: 1 IPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVR--NPQEARNLTDEY 48
>gi|91977981|ref|YP_570640.1| hypothetical protein RPD_3516 [Rhodopseudomonas palustris BisB5]
gi|91684437|gb|ABE40739.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 161
Score = 59.4 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 41/87 (47%)
Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
S +S+ +++ ++++P ++ ++V +P ADV + + + GK G N
Sbjct: 24 SSAAMAAGEDTVSVNVDQAKLIRLPQNISTLVVGNPLIADVTLQPGGMVVVTGKGYGATN 83
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEM 125
VI + G + + I +E + ++
Sbjct: 84 VIAMDRKGAVIADRLIQVEGPMDNVVT 110
>gi|188581656|ref|YP_001925101.1| hypothetical protein Mpop_2404 [Methylobacterium populi BJ001]
gi|179345154|gb|ACB80566.1| conserved hypothetical protein [Methylobacterium populi BJ001]
Length = 160
Score = 59.4 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 38/82 (46%)
Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
+ +S+ ++ ++++P Q V+V +P AD+ + + L GK+ G N+I
Sbjct: 30 NDPAPQGAVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNLIA 89
Query: 102 IGHDGKQMLNLDILIERDIAHL 123
+ G + I ++ A +
Sbjct: 90 LDGRGAMLAESTISVQAAQASI 111
>gi|172064588|ref|YP_001812238.1| type II secretory pathway component PulD-like protein [Burkholderia
ambifaria MC40-6]
gi|171998073|gb|ACB68989.1| type II secretory pathway component PulD-like protein [Burkholderia
ambifaria MC40-6]
Length = 536
Score = 59.4 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/275 (14%), Positives = 85/275 (30%), Gaps = 38/275 (13%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229
+ A + K++ N QV + V ++ + G + ++ +
Sbjct: 269 DTKEAADNIGKLLQHENAISTRQVAVTVRTIQISLSKGSEAGANADVVFNAMHAGLARYA 328
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ + GG V + F ++AL + T ++G S
Sbjct: 329 ISFASPTSLATGGGSVGVSVLRPDAPFSGTNAAINALNKYGRTVQDNTMTKMTLNGLPVS 388
Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
+L T S+ + + G+ ++ P V +I L +
Sbjct: 389 VASFQSDDYLRSTSPSAGTLNATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 448
Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVLAGLLKDDIQQLKEG 384
S+ + + S + ++ D T+ L G T+VL G + D
Sbjct: 449 SSKLNGPFTSAGVGSGQTQQQIQLAHTIGTKDDQTIALSDGQTVVLYGAMTDHADSTTNA 508
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+G L + +N+ +T I +V
Sbjct: 509 --------GIGGLTGS--WNKSKTFQIIMLKATVV 533
>gi|304392391|ref|ZP_07374332.1| PilQ [Ahrensia sp. R2A130]
gi|303295495|gb|EFL89854.1| PilQ [Ahrensia sp. R2A130]
Length = 171
Score = 59.4 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 52/116 (44%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
+ S + A PI A + K + + +++ ++++ V+V +P
Sbjct: 12 AIRSFALAGAFFAPIIAATVLPVAALADGHSAKKHLEVVVDRARVVRIAKPADTVIVGNP 71
Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
+ D + RT+ L G+ G N+I++ DG +++ ++++ + +L R+
Sbjct: 72 SIVDATIQDARTLVLTGRLFGVTNIIVLDSDGDPIVDETVVVKGEETNLVHVYRQA 127
>gi|90425192|ref|YP_533562.1| hypothetical protein RPC_3708 [Rhodopseudomonas palustris BisB18]
gi|90107206|gb|ABD89243.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length = 165
Score = 59.4 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
+ I L + P++A+ I++ +++ +++ P + ++V
Sbjct: 19 IGIGLLCALPAMAETA-------------------NGIIAVNVDQAKLVRFPARIATIVV 59
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
+P ADV + + + GK G NVI + G+ +L+ I +E +
Sbjct: 60 GNPLIADVTLQPGGIIVVTGKGYGATNVIAMDRAGEVLLDRVIQVEGPTDQVVT 113
>gi|254473697|ref|ZP_05087092.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
gi|211957083|gb|EEA92288.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
Length = 173
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
I A A I+ + + + + ++ + ++ + +++ +P+ ADV VH
Sbjct: 21 ASGAILTAMIAGISATSIAPAYA-DVEVVADQAKVFRLEEPAETIILGNPSIADVTVHDR 79
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
T+ + GK+ G N++++ + ++ I + ++A
Sbjct: 80 LTIVITGKSYGTTNLVVLNDASEPVVEELITVTAEMAG 117
>gi|254418061|ref|ZP_05031785.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3]
gi|196184238|gb|EDX79214.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3]
Length = 138
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 35/76 (46%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
+++ +++ +Q+ V+V +P ADV V T+++ GK G V+ + G
Sbjct: 27 SGALNVEIDRSARVQLNGAASSVIVGNPQIADVTVVDANTLFIVGKGYGVTEVVAVDGVG 86
Query: 107 KQMLNLDILIERDIAH 122
+ + +I++
Sbjct: 87 RTLFQREIVVTGGSTG 102
>gi|254561617|ref|YP_003068712.1| hypothetical protein METDI3204 [Methylobacterium extorquens DM4]
gi|254268895|emb|CAX24856.1| conserved hypothetical protein; putative exported protein precursor
[Methylobacterium extorquens DM4]
Length = 160
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 38/84 (45%)
Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
E +S+ ++ ++++P Q V+V +P AD+ + + L GK+ G N+
Sbjct: 28 RANEPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNL 87
Query: 100 ILIGHDGKQMLNLDILIERDIAHL 123
I + G + I ++ A +
Sbjct: 88 IALDGKGAMLAESTISVQAPQASI 111
>gi|255609758|ref|XP_002539091.1| conserved hypothetical protein [Ricinus communis]
gi|223508756|gb|EEF23292.1| conserved hypothetical protein [Ricinus communis]
Length = 279
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 41/163 (25%), Gaps = 40/163 (24%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-------------------------------- 221
QV ++ I E R + +G +
Sbjct: 118 RQVLIEARIVEARDTFGRALGVRLGGGDLRAQRGGDGGYSIGGDNRVAIGTGFDNANASA 177
Query: 222 -------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
++SG + S S+ L A+E + ++
Sbjct: 178 GASGQAVNTSGSFVNLPGKLSNVANSGTFAMSIFNAAANRFLTLELSAMESDGQGKIISS 237
Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
P L A G ++ Y + GAT++ + L
Sbjct: 238 PRLVTADQTKALIEQGTEYPYSVTAP-NGATTIAFKKAVLKLE 279
>gi|163851899|ref|YP_001639942.1| hypothetical protein Mext_2476 [Methylobacterium extorquens PA1]
gi|240139022|ref|YP_002963497.1| hypothetical protein MexAM1_META1p2441 [Methylobacterium extorquens
AM1]
gi|163663504|gb|ABY30871.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
gi|240008994|gb|ACS40220.1| conserved hypothetical protein; putative exported protein precursor
[Methylobacterium extorquens AM1]
Length = 160
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 38/84 (45%)
Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
E +S+ ++ ++++P Q V+V +P AD+ + + L GK+ G N+
Sbjct: 28 RANEPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNL 87
Query: 100 ILIGHDGKQMLNLDILIERDIAHL 123
I + G + I ++ A +
Sbjct: 88 IALDGKGAMLAESTISVQAPQASI 111
>gi|83312848|ref|YP_423112.1| hypothetical protein amb3749 [Magnetospirillum magneticum AMB-1]
gi|82947689|dbj|BAE52553.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 150
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
+ + I L +L + + V+V +P ADV V PRT+ +FGK G + ++ G
Sbjct: 25 TEALEIPLGGATLLPMRGVARSVVVGNPAIADVTVDGPRTITVFGKAPGGTTLAVLDAGG 84
>gi|325274960|ref|ZP_08140963.1| type IVB pilus formation outer membrane protein [Pseudomonas sp.
TJI-51]
gi|324099907|gb|EGB97750.1| type IVB pilus formation outer membrane protein [Pseudomonas sp.
TJI-51]
Length = 427
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 3/108 (2%)
Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
+N N QV L V + V +G ++ ++ + +
Sbjct: 315 LNGENSNITKQVLLNVKVLSVTLTDKDDLGIDWNLVYTAVNGKWGIGWKNVTQADAAAVQ 374
Query: 245 FSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
SV + + ++ AL + + T+ P++T ++ Q
Sbjct: 375 GSVSILDTSSQWAGSNLLVKALAQQGRVSTITSPSVTTLNLQPVPVQV 422
>gi|311109976|ref|YP_003982827.1| lipoprotein 4 [Achromobacter xylosoxidans A8]
gi|310764665|gb|ADP20112.1| lipoprotein 4 [Achromobacter xylosoxidans A8]
Length = 556
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/263 (18%), Positives = 87/263 (33%), Gaps = 39/263 (14%)
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
N + V +V V + G + S++ + + AA G + G
Sbjct: 299 NRMLTRRVRLVFEEVV---VSVNDQHDAGIDWRVIYSTASAAAAGAAPTGTMSTAAGTIA 355
Query: 246 SVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
S F + ++ AL+ L+A++ + ++ Y +TG
Sbjct: 356 SATVGSGPFKGSDAIIKALDEIGTTTRSTAIPLSALNRRPITYADRKTFSYINEVQTTGL 415
Query: 305 TSVTT-----------------HDYGVVLHFTPTVLSPGRIGLRIQTE--VSEPVIGV-- 343
TS + G L P G+I L I + +++P+ +
Sbjct: 416 TSSDSSNGSFSTVPNVSVRQKDVTVGQFLTLVPDAQEDGQILLTISYDSTINDPLQTIKF 475
Query: 344 ----NAGDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
N ++ VR V L SG +V+AG KD Q ++ K PI L
Sbjct: 476 GDSKNGIEIQQLTVRGNGMVQQVALQSGQPLVIAGFQKDQDQTSRQR--FDEKAPI---L 530
Query: 398 FRNSRFNREETEI--FIAATPFL 418
F + + + I T +
Sbjct: 531 FGGANSTNNQK-LYNLIIVTAQV 552
>gi|257486850|ref|ZP_05640891.1| type II and III secretion system protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 102
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I + + ++ +P+Y + V+L SG T++L+G +++ + I
Sbjct: 13 SINMSSKPTFEPFTSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI- 69
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFL 418
P L + ++ + + TP +
Sbjct: 70 GTGS-PGFFGLGGGRKRTSSKSVLVVLITPIV 100
>gi|262064151|gb|ACY07135.1| IV [Enterobacteria phage f1]
Length = 294
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/264 (15%), Positives = 82/264 (31%), Gaps = 36/264 (13%)
Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114
+ +I+ P V V DV + R ++ + N ++G + + D
Sbjct: 43 GESVIV-SPDVKGTVTVYSS---DVKPENLRNFFIS--VLRANNFDMVGSNPSIIQKYDP 96
Query: 115 LIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
+ I L + + V +D V + ++ + E F+
Sbjct: 97 NNQDYIDELPSSNNQEYDDNSAPSGGFFV-PQNDNVTQTFKINNVRAKDLI-RVVELFVK 154
Query: 170 QSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILK 211
+ S NLL ++ DQ+ ++ I EV++
Sbjct: 155 SNTSKSSNVLSIDG-SNLLVVSAPKDILNNLPQFLSTVDLPTDQILIEGLIFEVQQGDTL 213
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
F + + S GG F G+ + + AL+ + +
Sbjct: 214 DFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGDVLGLSVRALKTNSHSKI 269
Query: 272 LAEPTLTAISGQSASFTSGGQHLY 295
L+ P + +SGQ S + G +
Sbjct: 270 LSVPRILTLSGQKGSISVGQNVPF 293
>gi|220923702|ref|YP_002499004.1| hypothetical protein Mnod_3797 [Methylobacterium nodulans ORS 2060]
gi|219948309|gb|ACL58701.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
Length = 151
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 38/91 (41%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
++ + +++ +V I++ + V+V DP ADV V + T+
Sbjct: 1 MRAFAIIPLLAIVTSASAADSLALRPGQVEIVKTSRGARTVVVGDPDIADVTVANESTIV 60
Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERD 119
+ K G +++L+ G++ L + I
Sbjct: 61 VTAKENGVTDLVLLDESGREFLRKQLQIGSP 91
>gi|118589699|ref|ZP_01547104.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614]
gi|118437785|gb|EAV44421.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614]
Length = 154
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 38/75 (50%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
AV + V + + + + +++ + ++ V+V +P ADV + T+ + GK+
Sbjct: 13 AVALSTTVAVAQDGPVLVTVDRAKVFRIEDGAAAVIVGNPFIADVAMFDQNTVVITGKSY 72
Query: 95 GQANVILIGHDGKQM 109
G N++++ D K +
Sbjct: 73 GTTNLVILDGDNKPI 87
>gi|281356795|ref|ZP_06243286.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
gi|281316922|gb|EFB00945.1| type II and III secretion system protein [Victivallis vadensis ATCC
BAA-548]
Length = 502
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 47/266 (17%), Positives = 80/266 (30%), Gaps = 59/266 (22%)
Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------DFGGKFVSEGGDFSVKGVLDRF 254
T+ EVR IL+ +G + + G + A GG + G
Sbjct: 196 TVYEVRDSILRDLGIDYLGWRNGPGLNLFQAGMDALSLSSGGSSAVNAASGAFGGFFFAP 255
Query: 255 SFET-VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-STGATSVTTHDY 312
F+ + L++ +LT + SA ++ G + + V
Sbjct: 256 QFDASFIRILQQDGLANIANTASLTVANSDSAVYSIGFHPESQAIFKRDNDQLQVGVSGL 315
Query: 313 GVVLHFTPTVLSPGR--------------------------------------------- 327
G+ P S G
Sbjct: 316 GMQGGVKPPESSTGAENPLLTGSAPPPPLALSVTAPRICFRGEADARTGQVPYRLSDYNT 375
Query: 328 -----IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
+ + +V++ V N G + + + L SG +L K+ +
Sbjct: 376 TVNALVTFNYKIQVADVVERNNYGAELA-EIDQLSGDCNLLSGEEKILTMWHKESEVEQT 434
Query: 383 EGIPLLSKIPILGALFRNSRFNREET 408
G+P LS+IPIL LF + NRE+T
Sbjct: 435 IGVPFLSEIPILKHLFSTTTINREKT 460
>gi|120611389|ref|YP_971067.1| Type II secretory pathway component PulD-like protein [Acidovorax
citrulli AAC00-1]
gi|120589853|gb|ABM33293.1| Type II secretory pathway component PulD-like protein [Acidovorax
citrulli AAC00-1]
Length = 566
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/196 (19%), Positives = 58/196 (29%), Gaps = 19/196 (9%)
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
+ VTI V + G + + A + G + +
Sbjct: 331 LIDVTIYNVSMTKEETAGVSMDLVYRRLNGNGVGVAGAAPLQPANGQPGRITLSFSDPAS 390
Query: 257 ET-----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
V AL+ + + AI+GQ + F Y T S+T +V T
Sbjct: 391 RLAGSRMVAEALQSVGNVALYKKGQFMAINGQPSPFQVVDDEEYNTSVSATQTANVGTQL 450
Query: 312 Y--------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKAD 357
G+ + P +L RI L+ Q E+S A P +
Sbjct: 451 ATQKAVLTTGLTGNVLPLILGDNRILLQYQMEISAVSNMNPAVVNGILTYSPKRSRQSFQ 510
Query: 358 TTVELPSGGTIVLAGL 373
L G IVL G
Sbjct: 511 QQAFLKDGDAIVLFGY 526
>gi|240142222|ref|YP_002966732.1| hypothetical protein MexAM1_META2p0544 [Methylobacterium extorquens
AM1]
gi|240012166|gb|ACS43391.1| Hypothetical protein MexAM1_META2p0544 [Methylobacterium extorquens
AM1]
Length = 575
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/246 (14%), Positives = 63/246 (25%), Gaps = 55/246 (22%)
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G I + P + G VS+ + G S + L +
Sbjct: 314 GTSTGIGLTQIDPGRVMDLTKDGLVVSQTSLGRLGGAFGATSITGAIDFLSTFGTTKVDQ 373
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------------------VTTHDYGVV 315
+ +SG SG Q Y G + + G+
Sbjct: 374 NVQMKTLSGTEVKLRSGQQVPYVRGVQLAGLGAGGYGNGYGGGYGGLGSSLTDKVETGLT 433
Query: 316 LHFTPTVLSPGRI-GLRIQTEVSEP--------VIGVNAGDMPSYRVRKADTTVELPSGG 366
+ TP S + + + ++ E + P + ++ V + +G
Sbjct: 434 MEVTPYFDSDAEVVTMEVDVKLKEILSFVELNAGNQIGTFTQPLTQDQELTNIVRMQAGR 493
Query: 367 TIVLAGLLKDDIQQLK----------------EGIPLLSKIPILGALFRNSRFNREETEI 410
T+V+ GL D G+ F N + +
Sbjct: 494 TVVIGGLQSDSESYNGTEPTALRNATATRAGGSGV------------FGNRSQKVKRNAL 541
Query: 411 FIAATP 416
FI P
Sbjct: 542 FIILRP 547
>gi|294012342|ref|YP_003545802.1| type II secretory pathway component PulD [Sphingobium japonicum
UT26S]
gi|292675672|dbj|BAI97190.1| type II secretory pathway component PulD [Sphingobium japonicum
UT26S]
Length = 726
Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/340 (10%), Positives = 78/340 (22%), Gaps = 151/340 (44%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------- 243
+QV ++ I E+ K++G Q I + +G + + ++ ++ G
Sbjct: 357 TRREQVLVEAIIVEISDAAAKKLGVQFLIGSTKTGFAATNYSNASPNILTLAGAIAADRL 416
Query: 244 --------------------------------------------DFSVKGVLDRFSFETV 259
+ F +
Sbjct: 417 GETTTTVVAPDGTRTETRTRENGDLANTLQQAAVDSLMNATGGFGGVATSLGRNGIFGAI 476
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGV 314
++A++ T L+ P++ + Q AS G Q T + +V D G+
Sbjct: 477 INAVKSDTDSNILSTPSVMTLDNQKASILVGQQVPVTTGEALSQNFDNQFRTVQRQDVGI 536
Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY----------------------- 351
L P + + G I L ++ EVS V+ +
Sbjct: 537 KLEVKPQINTGGAIKLFLKQEVSSVAGPVSNNNSDLIINKREIETTVTVDDGEILALGGL 596
Query: 352 -------------------------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
+ R
Sbjct: 597 LDDNERKTIERIPLLSDIPGLGELFKSR-------------------------------- 624
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
+R +T + + P +++
Sbjct: 625 ---------------SKSRTKTNLMVFIRPTILRSKEDAQ 649
>gi|322834629|ref|YP_004214656.1| type II and III secretion system protein [Rahnella sp. Y9602]
gi|321169830|gb|ADW75529.1| type II and III secretion system protein [Rahnella sp. Y9602]
Length = 482
Score = 57.1 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/189 (13%), Positives = 56/189 (29%), Gaps = 13/189 (6%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
Q + I + ++ L++ G +++ G S GG G
Sbjct: 252 RQFVVTYKIFTLNKEKLEEYGAGLNMSYIDGGSSVVIDTSMMDML--GGGMTVAGGADRA 309
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTS---------GGQHLYKTVSSSTGA 304
S + L+AL T + L + + + + K
Sbjct: 310 LSIDAKLNALYSLTGSKVLQSGSFVTRNNTPIPLNMTNSQHYVSGRTRTVNKDSGDEDVE 369
Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVEL 362
G TP V++ GR+ + S+ + +P+ + + +
Sbjct: 370 IETAEIITGTSFIITPRVMTDGRVEVTSGFTKSQLNSIDVFDTVQLPNVTTTEMFNSTAV 429
Query: 363 PSGGTIVLA 371
G +++A
Sbjct: 430 NPGSLLMVA 438
>gi|171318753|ref|ZP_02907894.1| type II secretory pathway component PulD-like protein [Burkholderia
ambifaria MEX-5]
gi|171096069|gb|EDT40997.1| type II secretory pathway component PulD-like protein [Burkholderia
ambifaria MEX-5]
Length = 534
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/276 (15%), Positives = 84/276 (30%), Gaps = 40/276 (14%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229
+ A + K++ N QV + V ++ + Q G + ++ +
Sbjct: 267 DTKEAADNIGKLLKQENAISTRQVAITVRTIQIALNRGSQAGMNADVVFNAMHAGLARYA 326
Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ + GG V + F V++AL + T ++G S
Sbjct: 327 ISFTSPTSLATGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVS 386
Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
+L T SS T+ + G+ ++ P V +I L +
Sbjct: 387 VASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 446
Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383
S+ + S + ++ D T+ L G TIVL +
Sbjct: 447 SSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTIVLYGAITDQADSTTNT 506
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
GI + +N+ +T I +V
Sbjct: 507 GIAGI-----------TGSWNKAKTFQIIMLKATVV 531
>gi|315121901|ref|YP_004062390.1| hypothetical protein CKC_00755 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495303|gb|ADR51902.1| hypothetical protein CKC_00755 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 206
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTM 87
+ K+I I + + I+L+ +V++ + DV+ +++
Sbjct: 86 ATKPRTTNTPSPQPTTNDEKRIRIAIGQSIVLKFDSLPSEVIIGNDQITDVLALEKEKSI 145
Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILI 116
+ GK G N+I++G K +L DIL
Sbjct: 146 VITGKKSGLTNIIVLGAGNKVLLETDILS 174
>gi|218780600|ref|YP_002431918.1| hypothetical protein Dalk_2758 [Desulfatibacillum alkenivorans
AK-01]
gi|218761984|gb|ACL04450.1| hypothetical protein Dalk_2758 [Desulfatibacillum alkenivorans
AK-01]
Length = 351
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 32/171 (18%)
Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
E L+A E + P++ +S + G L V S
Sbjct: 202 PDLEAALYAAENRNELMMARRPSVKTLSNEEVLIKHGWDILIDPVQEVGSLGSADYDSMD 261
Query: 314 VVLHFTPTVLSPGRIGLRIQTEV------SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ LH TP ++ I + + E S+ N+G+M +E+ G T
Sbjct: 262 ITLHATPRIIRNEHIFMNLSVETIWYLNASDHGKYNNSGEMG----------IEVNQGET 311
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
I+++G+ + + +E E + TP +
Sbjct: 312 IIISGITLPSSIKEETE----------------RGEFEDEREFLVFITPTI 346
>gi|327543373|gb|EGF29799.1| type II and III secretion system protein [Rhodopirellula baltica
WH47]
Length = 376
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 1/122 (0%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV L+ I V D Q G G + + G E + +
Sbjct: 255 PQVVLEAIICVVSPDSGFQFGLDWQHAVEMDGVKELSLSASGLALNGELSQAGLDAIFSD 314
Query: 254 F-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
F + + L + A P + A G+ A+ + + + +
Sbjct: 315 FGNTSAFVRLLSEKGYLTIRATPHVMAKDGEQANIAINRETFFSVQPPGSTGNNSVFFQQ 374
Query: 313 GV 314
+
Sbjct: 375 NI 376
>gi|108763383|ref|YP_628353.1| serine/threonine kinase family protein [Myxococcus xanthus DK 1622]
gi|108467263|gb|ABF92448.1| serine/threonine kinase family protein [Myxococcus xanthus DK 1622]
Length = 478
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Query: 5 QRTFFTMMSI-FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
+R + L + K + +++AA + I + + V L VP
Sbjct: 365 RRGILALAGAGSLVVLGVLLWKPSFLFQSDAATPRAESLGRMAASLIVLRVGDVHELAVP 424
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
+Q + V +P+ +V V + L GK G ++I H G+
Sbjct: 425 G-LQRIAVGEPSLVEVTVPRQGVVRLKGKEEGSTDLITWSHAGE 467
>gi|8896026|gb|AAF81209.1|AF247502_4 PilNa [Salmonella enterica subsp. enterica serovar Dublin]
gi|7274588|gb|AAF14814.2| PilNa [Salmonella enterica subsp. enterica serovar Typhi str. Ty2]
gi|32454458|gb|AAP83030.1| PilNa [Salmonella enterica subsp. enterica serovar Paratyphi C]
Length = 277
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 6/120 (5%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------FSV 247
QV L V + V +Q+G +I S + + + G + +
Sbjct: 132 RQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNATSASVSILDSAT 191
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
++ AL + + + Q +Y SS+T T V
Sbjct: 192 GSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVAQSSTTTTTDV 251
>gi|254513511|ref|ZP_05125576.1| hypothetical protein RKLH11_4189 [Rhodobacteraceae bacterium KLH11]
gi|221532515|gb|EEE35511.1| hypothetical protein RKLH11_4189 [Rhodobacteraceae bacterium KLH11]
Length = 496
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 79/242 (32%), Gaps = 29/242 (11%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ + V + + +G + S G+ + + A G + DF
Sbjct: 271 IEIAVYFIDTSKSDTFAVGLEGS--GTHGAIAGAIGAITGNGIATIANDFGSINFQSLAE 328
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HDYG 313
+V+ T+A+ A S + S+ +TSV T D G
Sbjct: 329 NSSVVD----YRLTSTIAQSGTIAPISLPRSQNYVSKTTTTPDSNGNVSTSVETATIDTG 384
Query: 314 VVLHFTPTVLSPGRIGLRIQ------TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
+ +H P ++ RI L + TE+ G + +P R L G T
Sbjct: 385 ISIHALPRLVQNNRIHLSLTLIQNDLTELESFESGGSTVQLPKVDQRMILNDNILAPGET 444
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGAL-FRNSRFNR----EETEIFIAATPFLVKPV 422
+V +G +D + G+ G F ++ + + P ++ PV
Sbjct: 445 LVFSGYEQDKATRSNTGV---------GRARFLGLGGRARGGVDKIRMVVLVRPAII-PV 494
Query: 423 AM 424
A
Sbjct: 495 AG 496
>gi|318606999|emb|CBY28497.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 93
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
IP +G LFR S+ E++ + + P +++ +
Sbjct: 2 GDIPFIGGLFRQSKEKIEKSNLILFIRPTILRETS 36
>gi|170740625|ref|YP_001769280.1| hypothetical protein M446_2388 [Methylobacterium sp. 4-46]
gi|168194899|gb|ACA16846.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
Length = 158
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 34/77 (44%)
Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
+ + ++ I+++P V+V +P ADV + + L GK+ G N+I + G
Sbjct: 36 TVVVSVDNAKIIRLPERTATVVVGNPIIADVSLQRNGLVILTGKSFGTTNLIALDGSGAM 95
Query: 109 MLNLDILIERDIAHLEM 125
+ I ++ +
Sbjct: 96 LAESFISVQAATTSVVT 112
>gi|187921869|ref|YP_001893458.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
gi|187720307|gb|ACD21529.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
Length = 598
Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 32/274 (11%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGP 226
+ A ++ ++N V+ + + ++ R Q+G + G
Sbjct: 317 TDTKDAVDRAEGIINFHRALLNKLVSYHIRVVQITRSNAGQLGVDWQALLTKALNNVPGF 376
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
S + + G + + V++A+ + + + + + S
Sbjct: 377 IISSTSPLTLTTAAAGSLTTKITSGQFSGTQAVVNAIAQLGYTVSTDDIPMQVQNRHSGY 436
Query: 287 FTSGGQHLYKTVSS----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
+ + Q Y + ++ T + + G+ TV I + + +
Sbjct: 437 YDNVNQFSYVSQTTPAASTVGGTGGTPGITTSMDSVGLKFLIYGTVTDDNNISISVSMDN 496
Query: 337 SEPV---------IGVNAGDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
S G N + K A T + +GG IVLA + +Q +
Sbjct: 497 SALNGPIQTFTSGQGANQQSVQEVDKNKYGASTDGIVRNGGIIVLAAHDRTQLQSQRSA- 555
Query: 386 PLLS-KIPILGALFRNSRFNREETEIFIAATPFL 418
L KIP+L + + T + +
Sbjct: 556 --LGYKIPMLAG--GSVNDSDSRTTTLFVISASI 585
>gi|294784350|ref|ZP_06749641.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
gi|294487922|gb|EFG35277.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
Length = 407
Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 45/141 (31%), Gaps = 9/141 (6%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
QV + I ++ ++ +++GF + ++ G V +
Sbjct: 267 PKQVKITSQILDISNNLFEELGFNWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 326
Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
+ ++ LE + + PTL SG+ F + + +
Sbjct: 327 QFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386
Query: 304 ATSVTTHDYGVVLHFTPTVLS 324
+ + G+++ P ++
Sbjct: 387 YSEPIFKEAGLIMKVKPFIVK 407
>gi|330947449|gb|EGH48078.1| type II and III secretion system protein [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 134
Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 25/79 (31%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ + I ++ V + + V DP ADV V+ L G G ++++
Sbjct: 2 AERPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWT 61
Query: 104 HDGKQMLNLDILIERDIAH 122
+ +
Sbjct: 62 ACASAPRQSMVFVRGRATT 80
>gi|220922775|ref|YP_002498077.1| hypothetical protein Mnod_2823 [Methylobacterium nodulans ORS 2060]
gi|219947382|gb|ACL57774.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
Length = 161
Score = 54.4 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 37/89 (41%)
Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
+ + + + ++ I+++P V+V +P ADV + + L GK+ G
Sbjct: 27 VAQALEAGADPGMVVVSVDNAKIIRLPERTATVVVGNPIIADVTLQRNGIVILTGKSFGS 86
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEM 125
N+I + G + I ++ + +
Sbjct: 87 TNLIALDAAGTMLAESFISVQAATSSVVT 115
>gi|325274962|ref|ZP_08140964.1| PilN family type IV pilus biogenesis protein [Pseudomonas sp.
TJI-51]
gi|324099903|gb|EGB97747.1| PilN family type IV pilus biogenesis protein [Pseudomonas sp.
TJI-51]
Length = 120
Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 10/116 (8%)
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVEL 362
T G ++ P V+ + LR +S + G N ++P R V+L
Sbjct: 7 TVTSGFNMNLLPYVMPGKELLLRYSINLSALKQIRQVSSGDNTIEIPEVDNRIFSQMVKL 66
Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
SG T+VL+G + K G+ + ++G + + + + I + TP +
Sbjct: 67 RSGETLVLSGFEQSVDNGSKAGV-GSASNWLMG---GSLKRDNSKDVIVVLITPIV 118
>gi|197336519|ref|YP_002157477.1| lipoprotein, putative [Vibrio fischeri MJ11]
gi|197315222|gb|ACH64670.1| lipoprotein, putative [Vibrio fischeri MJ11]
Length = 540
Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/235 (11%), Positives = 71/235 (30%), Gaps = 18/235 (7%)
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
++ + E+ ++ + + S+ + + + G + K D
Sbjct: 307 IQADVYEIIWEVNDEKQVSWTAAFESASFALNAMSPTVVSDSGLGSITATKIGGDFDGSN 366
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------GATSVTT 309
+ L ++ + ++ + S + T +T+
Sbjct: 367 IIGKFLNENASVYSRITNSIKTKNNIPTQLISSQDRAIVSGREVTIDSNGFAQQSTNTKL 426
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVE---LP 363
+ G + P + S G+I + + + + + DM K T+ +
Sbjct: 427 INEGFNITTRPRLTSDGKIDMEVIVNTKSIGDIKTFGSEEDMVQLEETKQHGTISGIPIR 486
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
SG ++VL +D + L +P R ++ + + P +
Sbjct: 487 SGESVVLNAYERDLTRADLAS--LEKNLPW--WTGGGKSNKRYKSSLIVMVKPVI 537
>gi|317485728|ref|ZP_07944598.1| ribose-5-phosphate isomerase [Bilophila wadsworthia 3_1_6]
gi|316923010|gb|EFV44226.1| ribose-5-phosphate isomerase [Bilophila wadsworthia 3_1_6]
Length = 177
Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 47/171 (27%), Gaps = 23/171 (13%)
Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH-------LYKTVSSSTGATSVTT 309
L AL L S Q + +H L + + T +
Sbjct: 9 SGTLKALREWGRATQLTSAGGLLTSNQPLPVLAIKRHAYLAGMSLSTSDYNQTSEITPGE 68
Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELP 363
G + P +L+ R+ L+ +S E +P R ++
Sbjct: 69 VTTGFAMTIIPHILADRRVILQYNITLSALDDMQEIDREEVYVQLPQVSTRSFAQRSKMK 128
Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
G T+VLAG + G L + +T + +
Sbjct: 129 MGQTLVLAGFEQSRQTANNA----------FGILNTGRDADYGKTLLVVTI 169
>gi|229592009|ref|YP_002874128.1| secretory protein [Pseudomonas fluorescens SBW25]
gi|229363875|emb|CAY51352.1| secretory protein [Pseudomonas fluorescens SBW25]
Length = 481
Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/202 (14%), Positives = 61/202 (30%), Gaps = 23/202 (11%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+K++ L+I + + + + ++ RD LK++G +
Sbjct: 247 QKLVAELDIPKRS-IEVSLWLVDLERDELKKLGMDWG-------------------DDTN 286
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
V +D + ALER P + A F
Sbjct: 287 TSTTRVLAPVDDSHLMASIGALERRRRATVATLPVILTQENVPAVFQDNHTFYMPPP--G 344
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-ADTTV 360
+ T YG + P +I +R++ + + + + R ++ V
Sbjct: 345 SDRTDWKPVRYGTQVSVLPRFAEANQIEMRLEVQDGRQMSEAPGREKNTAVGRVGVNSVV 404
Query: 361 ELPSGGTIVLAGLLKDDIQQLK 382
LP G + L + + +
Sbjct: 405 RLPPGRRLWLGAFNRKSEGRGR 426
>gi|298155844|ref|YP_003717670.1| putative exported pilus biosynthesis protein [Escherichia coli ETEC
1392/75]
gi|156121667|gb|ABU50043.1| LngD [Escherichia coli]
gi|297374441|emb|CBL93503.1| putative exported pilus biosynthesis protein [Escherichia coli ETEC
1392/75]
Length = 492
Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/204 (13%), Positives = 54/204 (26%), Gaps = 14/204 (6%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
V+ Q L I + + ++++G +++ + G S
Sbjct: 244 DNVLKKYREDNSRQFVLTYKIFTIDKKKVRKLGAAANLSYLNGGTSIGIDTSLLSSLSGA 303
Query: 242 GGDFSVKG---VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
F+ + A+ + T L T + Y +
Sbjct: 304 TFGRDFIVPVENTQNFNITGKIEAIYQLTGKNVLQSGTFITRNNVPVPVNLTQTQNYISG 363
Query: 299 SS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGD 347
+ S G TP VLS G I + N +
Sbjct: 364 RTQTTNSLTSVSDTTIETDKVITGSSFILTPRVLSDGSIEVSSAFTKKTLNSIENFESVQ 423
Query: 348 MPSYRVRKADTTVELPSGGTIVLA 371
+P+ + T L G +++A
Sbjct: 424 LPNVSTTEMFNTSVLKPGTLMMVA 447
>gi|56550580|ref|YP_161646.1| hypothetical protein RMe0022 [Cupriavidus metallidurans CH34]
gi|94152701|ref|YP_582103.1| hypothetical protein Rmet_6294 [Cupriavidus metallidurans CH34]
gi|56410286|emb|CAI30168.1| hypothetical protein RMe0022 [Cupriavidus metallidurans CH34]
gi|93359067|gb|ABF13153.1| Type II secretory pathway, component PulD [Cupriavidus
metallidurans CH34]
Length = 600
Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 43/320 (13%), Positives = 109/320 (34%), Gaps = 40/320 (12%)
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE----TFLSQSGRNQYANSSSKK 183
+ A + ++ +D L G+ ++I + V +E T + + A ++ +
Sbjct: 279 AQIDAAAKAEIKEQND---LEGVKKSILPAMTMVGSAELNPATGVLTLRDTKEAVDAADE 335
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKF 238
++ VTLK + ++ + G ++ + G + + +
Sbjct: 336 IIRKQIAIYSRMVTLKFQMIDLTVSDAGEAGVDWNVVLTKALQNLPGFTVNALSPATLVS 395
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
+ GG + +++AL++ + + ++ + + + Y +
Sbjct: 396 STAGGVGLGITSGGFNGTQAIVNALKQYGTVTSGVTIPVSMRNRHGFQYNNRRTFSYASG 455
Query: 299 SSSTGATSV----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IG 342
S+ T+ +T G L S + L I + S+
Sbjct: 456 STPATTTAGGTGGIPGIITSTATVGFKLAAYADATSRDDVNLTIALDQSKQDGPLEKFTS 515
Query: 343 VNAGDMPSYRVRKA------DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK-IPILG 395
+ + S + + + +G T+++A L +DD + L + +P+L
Sbjct: 516 GSGNNQQSVQTINIVGKGIPKQDIIVRNGQTVLMAALDQDDTANTRRT---LGESLPML- 571
Query: 396 ALFRNSRFNREETEIFIAAT 415
L + ++ T + AT
Sbjct: 572 -LGGSQTVSKTRTFTLLLAT 590
>gi|330814465|ref|YP_004362640.1| type II secretory pathway component PulD-like protein [Burkholderia
gladioli BSR3]
gi|327374457|gb|AEA65808.1| type II secretory pathway component PulD-like protein [Burkholderia
gladioli BSR3]
Length = 531
Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 44/276 (15%), Positives = 81/276 (29%), Gaps = 40/276 (14%)
Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
+ A + K++N N QV + V ++ + Q G + ++ + A
Sbjct: 264 DTKEAADNIGKLLNHENAISTRQVAITVRTLQIALNKGSQAGANADVVFNAMHAGLARYA 323
Query: 233 DFGGKFVSEGGDFSVKGVLDR------FSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
S GV V++AL + T ++G +
Sbjct: 324 VSFTSPTSLASGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVA 383
Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
+L T SS T+ + G+ ++ P V +I L +
Sbjct: 384 IASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 443
Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383
S+ + S + ++ D T+ L G TIVL +
Sbjct: 444 SSKLNGPFTSVGAGSGQTQQQIQLAHTVGSKDDQTIALSDGQTIVLYGAITDQADSTTNA 503
Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
G L +N+ +T I +V
Sbjct: 504 GFAGL-----------TGTWNKSKTFQVIMLKATVV 528
>gi|37522852|ref|NP_926229.1| hypothetical protein gll3283 [Gloeobacter violaceus PCC 7421]
gi|35213854|dbj|BAC91224.1| gll3283 [Gloeobacter violaceus PCC 7421]
Length = 234
Score = 53.2 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 69/232 (29%), Gaps = 43/232 (18%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
Q+ + I E+ L+ + A +G + + +
Sbjct: 44 SQQIVFSIQIIELDGTGLQTL----------------SKAIYGTQPTTGTPASAENANRL 87
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-TGATSVTTHD 311
R + + A R + + LT SG+ A F S + + + +T
Sbjct: 88 RRAIFEQVRA----GRGRLVVDTELTVGSGERAGFDSQLDMNFTLAPQDRSKPPTFSTVR 143
Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-ADTTVELPSGGTIVL 370
G L F P VL G I +I+ + S P R +T+ T+
Sbjct: 144 AGNRLEFEPAVLPDGNILTKIRVDASVAAARDRNTGRPIDITRSSIYSTLTFQPNQTVAF 203
Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
++ L +P IP TE I TP LV
Sbjct: 204 G-----NLTSLGTSVP----IP------------ANRTEQIILITPRLVSAT 234
>gi|171911831|ref|ZP_02927301.1| probable penicillin resistance regulatory protein [Verrucomicrobium
spinosum DSM 4136]
Length = 711
Score = 53.2 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/298 (11%), Positives = 81/298 (27%), Gaps = 67/298 (22%)
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
++++ L+ QV L+ E + A +
Sbjct: 295 DQLLDQLSAHAPLQVLLETRWIE--------------LLAPPEEGGPVSTALATLQEKRT 340
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
+ + +L ++ ++ + + ++ P++T GQ A + ++
Sbjct: 341 ANGRANEAILSDPDYQNIIRLFSQQKGVHLVSNPSVTTRMGQKAVVEVIREVRRPGEAAK 400
Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQT------EVSEPVIGVNAGDMPSYR 352
H G+ F P + G ++ + + ++E + G +P+
Sbjct: 401 GLNDD---HFVGIQNSFEPVRTADGKKVQVSMTAKLRRLAGRSIAESNALIKDGILPAGE 457
Query: 353 VRKADTT---VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
A T V L G T+ + I +
Sbjct: 458 RILAFTNSAEVSLTDGETVCM-------------------DI----------GTAEDHRR 488
Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
+ + T +VKP + +D + + AS + G
Sbjct: 489 LLLFVTSKIVKPAEA---------LTKPEDLERELNRQSTPGREHPGASRAKPVAVSG 537
>gi|253997315|ref|YP_003049379.1| NolW domain-containing protein [Methylotenera mobilis JLW8]
gi|253983994|gb|ACT48852.1| NolW domain protein [Methylotenera mobilis JLW8]
Length = 282
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 62/228 (27%), Gaps = 16/228 (7%)
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV-TIAEVRRDILKQIGFQHSIT 220
+E L + ++ + N L + + + +V +
Sbjct: 43 RFAEEVLPTIQAVIGDHGTASAIQNQLIVRTDSRTMAEVEQTISTLDTARENFTISVKRQ 102
Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
SSG +++ + + R + + + T + ++ +
Sbjct: 103 NISSGSNRNSTIRGRTRIGNATIQTGNDARGGRDGIQIGIE--DNQTNAQQSSQQFIRVT 160
Query: 281 SGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
G A + G Y + S D G + +I L I
Sbjct: 161 DGAPAYISVGESIPYTNEWVVLTRRYAVRQVSTQFVDIGTGFTVRARSI-GSQIELEITP 219
Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
S + +TV + G + + G+++D + +
Sbjct: 220 TFSRLQQDG------RIEFEQLSSTVRVQRGEWVNIGGIMQDKDEVSR 261
>gi|197105562|ref|YP_002130939.1| hypothetical protein PHZ_c2099 [Phenylobacterium zucineum HLK1]
gi|196478982|gb|ACG78510.1| hypothetical protein PHZ_c2099 [Phenylobacterium zucineum HLK1]
Length = 489
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/280 (13%), Positives = 76/280 (27%), Gaps = 35/280 (12%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ ++ + R G + + +GG+ G +V +S
Sbjct: 222 ILIEAFLIRDTRSANFNEGVNLLESLALQFEGTLVNYSYGGEDEGTDGQVTVTLPAVTYS 281
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
L + A P + A G+++ F GG L +S + D G+
Sbjct: 282 LNLASRDLS---RVSLEASPVVLARQGKTSKFLEGGSVLIVPLSDDSDPVE---RDVGIS 335
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELPSGGTIVL 370
L TP + + L + E+S + + + + +P G +V+
Sbjct: 336 LEVTPERIGEHDVDLTVALELSNITGQSVNNAGRGASLLQTDKSRVEASARVPFGKAVVV 395
Query: 371 AGLLKDDIQQLKEG------IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
++ + G +P LS ++ +
Sbjct: 396 GSTGSLTRRKTRTGSLTAAPVPGLS----------TKGRGASRRDVLALISVR-----RA 440
Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
D S P F V A + +
Sbjct: 441 EDDSGPA---FDAAAVAGRLFGEVLPAPAAYGARPSDTPD 477
>gi|320174025|gb|EFW49195.1| General secretion pathway protein D [Shigella dysenteriae CDC
74-1112]
Length = 493
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 37/178 (20%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G + S + + ++ A++ ++ L+ P++T + Q A F
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMV 492
>gi|289675698|ref|ZP_06496588.1| type II and III secretion system protein [Pseudomonas syringae pv.
syringae FF5]
Length = 133
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 24/79 (30%)
Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
+ I ++ V + + V DP ADV V+ L G G ++++
Sbjct: 5 AAMPAAVEIDQGIQQEVRSVVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWT 64
Query: 104 HDGKQMLNLDILIERDIAH 122
+ +
Sbjct: 65 ACASAPRQSMVFVRGRATT 83
>gi|320184381|gb|EFW59193.1| General secretion pathway protein D [Shigella flexneri CDC 796-83]
Length = 493
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 37/178 (20%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G + S + + ++ A++ ++ L+ P++T + Q A F
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMV 492
>gi|332091465|gb|EGI96550.1| general secretion pathway protein D [Shigella boydii 3594-74]
Length = 493
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 37/178 (20%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
G Q + + S + + D
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434
Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
G + S + + ++ A++ ++ L+ P++T + Q A F
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMV 492
>gi|170749896|ref|YP_001756156.1| hypothetical protein Mrad2831_3496 [Methylobacterium radiotolerans
JCM 2831]
gi|170656418|gb|ACB25473.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
2831]
Length = 164
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 36/83 (43%)
Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
+ + +++ ++ +L++P V+V +P A+V + L GK+
Sbjct: 18 TGAAAAAGQPDLLPVVTVLVDNAKVLRLPEKTSTVIVGNPIIAEVTPQKNGVLVLTGKSF 77
Query: 95 GQANVILIGHDGKQMLNLDILIE 117
G N+I + + G + I +E
Sbjct: 78 GSTNLIALDNGGAMIAETTIRVE 100
>gi|8896027|gb|AAF81210.1|AF247502_5 PilNb [Salmonella enterica subsp. enterica serovar Dublin]
gi|7274591|gb|AAF44784.1| PilNb [Salmonella enterica subsp. enterica serovar Typhi str. Ty2]
gi|32454459|gb|AAP83031.1| PilNb [Salmonella enterica subsp. enterica serovar Paratyphi C]
Length = 129
Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTV 360
G + P + G + L++ +S+P G + +MP ++R
Sbjct: 11 MMTTGFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYTKLRSLSQKT 70
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
L +G +VL G + + + K G +LG + + + I TP L
Sbjct: 71 NLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLVIIITPEL 124
>gi|281355410|ref|ZP_06241904.1| hypothetical protein Vvad_PD3516 [Victivallis vadensis ATCC
BAA-548]
gi|281318290|gb|EFB02310.1| hypothetical protein Vvad_PD3516 [Victivallis vadensis ATCC
BAA-548]
Length = 355
Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/347 (13%), Positives = 110/347 (31%), Gaps = 42/347 (12%)
Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ-- 155
NV++ + + D+ D+A + + + + + + G I+
Sbjct: 15 NVVVFDDLKDKPIFADV-SGCDLADVLDLITWLL---GVEWVERAGQYYIGGNQSKIEVL 70
Query: 156 -------DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL-KVTIAEVRR 207
++ + ++ Q KK+ + L E V L ++ + EV
Sbjct: 71 PSLGIDSKLEQVFPNAVKLVNDKIIAQGTERELKKISDALTSTLERDVALCQLKVIEVVY 130
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
D Q+G + + ++ + + S + +
Sbjct: 131 DDRFQVGLDWEKSFEYAVSWENMVKNVHPVTHAA------------MSLAASVQLDQAVI 178
Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVL 323
+ R + + + +SG G + S+S V T G+++ +
Sbjct: 179 STRYVIDTQVGILSGSKVELNIGDEIDRPIYSTSEYGNRVLSGYNTQKTGLLIGLSAYHA 238
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD-IQQLK 382
+ E S PV + + K T V++ +LA + ++
Sbjct: 239 GSAWV-FDASVEHSRPVTDLQ------KTLSKVTTQVKIEDSRPFLLANVSSSGGETNIE 291
Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAA----TPFLVKPVAMR 425
+G+P L ++P +G LF + + ++ + KP+
Sbjct: 292 QGVPFLCRLPWIGFLFGVYDKVHLQRDFYVCIQLLDRNRVPKPLEPA 338
>gi|153800448|ref|ZP_01955034.1| CofD [Vibrio cholerae MZO-3]
gi|124124074|gb|EAY42817.1| CofD [Vibrio cholerae MZO-3]
Length = 486
Score = 51.7 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/338 (10%), Positives = 90/338 (26%), Gaps = 37/338 (10%)
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRA 160
+ ++ ++F +I + + G T +S
Sbjct: 147 DENNVLVASVYHRYTIALDYYGENKKFETGMDISGNEATSGSGITGKSETSFESSFWDDV 206
Query: 161 VELSETFLSQS-------------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
+ E +L+ + K++ + Q + I + +
Sbjct: 207 ETIVEHYLTSGQYSLIKDSSLIAINARPSEFAEVNKILKKFKEDNQRQFVVTYKIFTLDK 266
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERA 266
+ +G +++ G + S G + + L AL +
Sbjct: 267 SKEQSLGGGVNLSHQVPGTTVGITTGMLSSLGSGINFDRQFYGDGKKLNMTGQLEALFKL 326
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---------STGATSVTTHDYGVVLH 317
T + L + + + + + + + + G
Sbjct: 327 TGSKLLQSGSFITRNNSPIPLNLTNSKYFVSGRTQTKNDNNTVTDSSVETSQIVTGTSFI 386
Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
TP VLS G+I + + +P+ + T + G +++A
Sbjct: 387 LTPRVLSDGKIEVLSGFTKKTLNSIDLFESVQLPNVTTTEMFNTSTVTPGSLLMVARYDS 446
Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
+ + + G +L ++ + T + +
Sbjct: 447 AEESE-RNGYEVLGA--------THADNSNNNTVVMVV 475
>gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254547834|gb|ACT57211.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 135
Score = 51.3 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTMYLFGKNVGQANVILIGHD 105
+I I + + +ILQ V + V+V D DV+ +T+ + GKN+G N+I++GH+
Sbjct: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
Query: 106 GKQMLNLDILI 116
+L+ +I
Sbjct: 92 NDILLDTEIAT 102
>gi|217077117|ref|YP_002334833.1| secretin and TonB N terminus short domain protein [Thermosipho
africanus TCF52B]
gi|217036970|gb|ACJ75492.1| secretin and TonB N terminus short domain protein [Thermosipho
africanus TCF52B]
Length = 360
Score = 50.9 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/276 (13%), Positives = 68/276 (24%), Gaps = 39/276 (14%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV-----TLKVT------- 201
+ A ELS+ + +SS + I Q+ L V
Sbjct: 106 PLRYKTASELSKVLPKELKEYILYSSSEDSITVFAPIPVASQIANIVSILDVKKKSYTAN 165
Query: 202 --IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
I +V LK A F + + F+ +
Sbjct: 166 IKIIDVSESYLKSF-LLKINYSQERLNDLLSGAIFSIPLYGNYLNLLFSSTTENKDFDLI 224
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
I+ L+ + S + + T
Sbjct: 225 Y-----DGNIKMLS----------GVKSSLRTSKKVLVDEIVDNKISKKAVESNISFELT 269
Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
P L I ++ IG + + T V + V+ +
Sbjct: 270 PYFLKS---SALIDLNINLENIGTDRLG------SQVSTKVPIDFSVPKVIGAYSYLKSE 320
Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
+ G+ L +PI+G LF+ + E+ I
Sbjct: 321 RADGGLSFLMDLPIIGNLFKQNFEKHEKRYILFVLR 356
>gi|116249977|ref|YP_765815.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115254625|emb|CAK05699.1| putative pilus subunit transmembrane protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 136
Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 12/128 (9%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A + + ++ +L++ V V+V + AD V +T+ L G++
Sbjct: 15 AVFGISGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAAVADATVADAKTIVLTGRS 74
Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
G N++L+ DG +L+ E L + +RV + VL
Sbjct: 75 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTQRSVLSCTPNC 122
Query: 154 IQDSQRAV 161
Q +Q+A
Sbjct: 123 EQHAQQAA 130
>gi|121610631|ref|YP_998438.1| hypothetical protein Veis_3705 [Verminephrobacter eiseniae EF01-2]
gi|121555271|gb|ABM59420.1| hypothetical protein Veis_3705 [Verminephrobacter eiseniae EF01-2]
Length = 586
Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/246 (14%), Positives = 68/246 (27%), Gaps = 29/246 (11%)
Query: 197 TLKVTI--AEVRRDILKQIGFQHSITGSSSGPSKSFA---ADFGGKFVSEGGDFSVKGVL 251
+ VT V+ + G S S + S+
Sbjct: 343 MVNVTFDLYSVKTSDADEKGLDWSSVFQSLSRKYGLTFSTPSLSTGATAGSIGASMVWGN 402
Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISG------QSASFTSGGQHLYKTVSSST--- 302
+ + +L L + ++T ++G + A+ + + S S
Sbjct: 403 GTATTKAMLALLNQYGEASQHRPISITTLNGMWDTKSRLATEGYLKETVPGLSSGSGAAG 462
Query: 303 -GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDM-----PSY 351
T G P V + + LR +S+ V + + P
Sbjct: 463 APGLKTDTITTGDQFAVLPYVQNDNTVLLRYSIGLSDLLGMFDVTTGSGATLQKVQTPRT 522
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
A +T+ L G V+ GL + ++ L +P++ L R +
Sbjct: 523 ESLNASSTIALAPGEAAVITGLSRLVAKRDDTR--LAENLPLV--LGGTRRLAYQREHFL 578
Query: 412 IAATPF 417
I
Sbjct: 579 ILVRAT 584
>gi|297539539|ref|YP_003675308.1| NolW domain-containing protein [Methylotenera sp. 301]
gi|297258886|gb|ADI30731.1| NolW domain protein [Methylotenera sp. 301]
Length = 284
Score = 50.5 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/226 (10%), Positives = 65/226 (28%), Gaps = 16/226 (7%)
Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV-TIAEVRRDILKQIGFQHSITGS 222
+E L ++ ++ + N L I + +++ I + + S +
Sbjct: 47 AEDILPIIQPLVGSDGTATGMQNHLIIRASPEKMIEIEQIISTLDVERQNLRITVSHQNN 106
Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
+ + A + + + + + ++IR+ + + G
Sbjct: 107 LQTNNDNVAVSGRKRIGNVTIGTNKYPRNAADGVQLDIE--NNQSSIRSNGNQFINVMDG 164
Query: 283 QSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
+ A G Y ++ + D P + ++ L I +
Sbjct: 165 ERAFIRVGRSVPYTQEWVTLTQRYTSIQRTTEFADISTGFSVRPRSI-GNQVELEITPRI 223
Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
++ + T V + G + L G ++ + +
Sbjct: 224 AQL------NQNKYIDFEELSTIVRVNRGEWLDLGGTMQQKDEVSR 263
>gi|213421917|ref|ZP_03354983.1| putative outer membrane secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 213
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 12/121 (9%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
D ++ + + + + + + + + + V I +V + Q+
Sbjct: 105 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 156
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G S G +F G + D +F L+ALE+++ L+
Sbjct: 157 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 212
Query: 274 E 274
+
Sbjct: 213 Q 213
>gi|241207153|ref|YP_002978249.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861043|gb|ACS58710.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 136
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 39/86 (45%)
Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
A + + ++ +L++ V V+V + AD V +T+ L G++
Sbjct: 15 AVFGISGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAAVADATVADAKTIVLTGRS 74
Query: 94 VGQANVILIGHDGKQMLNLDILIERD 119
G N++L+ DG +L+ IL+ D
Sbjct: 75 FGTTNLVLLDADGNAILDERILVSID 100
>gi|288959939|ref|YP_003450279.1| hypothetical protein AZL_a02040 [Azospirillum sp. B510]
gi|288912247|dbj|BAI73735.1| hypothetical protein AZL_a02040 [Azospirillum sp. B510]
Length = 512
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/303 (13%), Positives = 87/303 (28%), Gaps = 54/303 (17%)
Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
F+++ + V + V T + A +++++ + + ++V+
Sbjct: 164 FLSNRDRFAFTVPQNQAVIDSVMTDLKTLGATDITQSLRGGQVVFSASPTVYREVIQPYI 223
Query: 190 ---IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------------PS 227
V +++ + + GF +
Sbjct: 224 DRLHRNMAMVRIQLAVVSLGLTDQSASGFDWNALALQFNRLQSGTTTTTTGTTTVNGTVG 283
Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
+ +A V+ ++ GV F+ + L + T + +SG +
Sbjct: 284 GTLSAAQPPLSVNISNPGTLLGVSGVFNVAGAISFLSKFGNTDTRQNVEVHTLSGAEVTL 343
Query: 288 TSGGQHLYKTVSSST-----------------------GATSVTTHDYGVVLHFTPTVLS 324
SG Y T T G+ T G+ + TP +
Sbjct: 344 RSGQTIPYVTGVGVTAVGGLGTTTAATGNAALNSPGVVGSAQTGTVQTGLTIKLTPHFDA 403
Query: 325 PGRI-------GLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLK 375
+I L E + G G P + + + V + +G T+VL GL
Sbjct: 404 DNQIVTIDLNLLLNNLIEFRDLNAGNQVGILTQPVTQEQALNDIVRVVAGNTVVLGGLQT 463
Query: 376 DDI 378
D
Sbjct: 464 DSR 466
>gi|281355403|ref|ZP_06241897.1| hypothetical protein Vvad_PD3509 [Victivallis vadensis ATCC
BAA-548]
gi|281318283|gb|EFB02303.1| hypothetical protein Vvad_PD3509 [Victivallis vadensis ATCC
BAA-548]
Length = 283
Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 40/281 (14%), Positives = 90/281 (32%), Gaps = 29/281 (10%)
Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL-KVTIAEVRRDILKQI 213
++ + ++ Q KK+ + L E V L ++ + EV D Q+
Sbjct: 5 SKLEQVFPNAVKLVNDKIIAQGTERELKKISDALTSTLERDVALCQLKVIEVVYDDRFQV 64
Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
G + + ++ + + S + + + R +
Sbjct: 65 GLDWEKSFEYAVSWENMVKNVHPVTHAA------------MSLAASVQLDQAVISTRYVI 112
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVLSPGRIG 329
+ + +SG G + S+S V T G+++ + +
Sbjct: 113 DTQVGILSGSKVELNIGDEIDRPIYSTSEYGNRVLSGYNTQKTGLLIGLSAYHAGSAWV- 171
Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD-IQQLKEGIPLL 388
E S PV + + K T V++ +LA + +++G+P L
Sbjct: 172 FDASVEHSRPVTDLQ------KTLSKVTTQVKIEDSRPFLLANVSSSGGETNIEQGVPFL 225
Query: 389 SKIPILGALFRNSRFNREETEIFIAA----TPFLVKPVAMR 425
++P +G LF + + ++ + KP+
Sbjct: 226 CRLPWIGFLFGVYDKVHLQRDFYVCIQLLDRNRVPKPLEPA 266
>gi|89885736|ref|YP_515934.1| hypothetical protein Rfer_4249 [Rhodoferax ferrireducens T118]
gi|89347734|gb|ABD71936.1| hypothetical protein Rfer_4249 [Rhodoferax ferrireducens T118]
Length = 483
Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 65/418 (15%), Positives = 128/418 (30%), Gaps = 59/418 (14%)
Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQ------- 96
+++ ++ +L+ + ++D AD++ H+ T+ + G +G
Sbjct: 76 STSQRMPPVFDQSFVLREQTP---LAITD--VADIIRAHTGLTILINGDAIGSQRIGVDS 130
Query: 97 -ANV-----ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV--VLH 148
++ G LD I+ + + + I V V
Sbjct: 131 VTSLKSLLDSTTSRFGMTWQYLDDAIQIQQSVVRTFVIDRPGFEAITVGSAGAAAKTVTR 190
Query: 149 GMVRTIQDSQRAV----ELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVT 201
I D+ R V +S S S + ++ ++ LL + +VTL
Sbjct: 191 DPWADILDAIRVVAPRARVSAMRSSNSITVADSPANVARIAELLEVDDRQASKKVTLLWK 250
Query: 202 IAEVRRDILKQ--IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
+ + + + +GF + TG S + G + + L E +
Sbjct: 251 LVVFTKSVGGETGLGFNYLKTGGRKISFASPTSLVGTIASALKVESISGESLGS---EMI 307
Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----------- 308
L+ L ++ + + + Q+ G + +S ST + +
Sbjct: 308 LNLLNQSGSTVVVRDG--ITEIAQNGRSDFGTEKEVFYISRSTPGVASSSTTSASVGLEQ 365
Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVE 361
+ G+ F TV R+ L VS P R + V
Sbjct: 366 ASVKVGLAGAFGATVFDSERMTLGYDFTVSSLDQLKSVTSAGTTLQSPETTKRYSRGQVP 425
Query: 362 LPSGGTIVLAGLLKDDIQQLKEGI-PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+ G T +L+ D + GI P I L + + + TP L
Sbjct: 426 IKHGETWILSAETSDSNSFDRRGILPAQGSI-----LGGSETAGSSRDQWLLLVTPIL 478
>gi|317133812|ref|YP_004089723.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7]
gi|315450274|gb|ADU23837.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7]
Length = 467
Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 19/175 (10%)
Query: 49 KISIGLNKV-----IILQVPVDVQD--VLVSDPTKADVV--VHSPRTMYLFGKNVGQANV 99
++ + + +L + + VLV D AD +P + + GK G +
Sbjct: 206 EMELTYGESDTVSVTLLPFDAENKRLTVLVGDTDIADYEFDQTNPNGIIVTGKKAGTTTI 265
Query: 100 ILIGHDGKQMLNLDILIERDIAHLEM-TLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDS 157
G ++ DI + + + +N + +V G
Sbjct: 266 TFTGDSWTDTIDDDISAVLTVTVNKADSTVTVAPTANELTYTGSGQDLVAKGETEDGTIV 325
Query: 158 QRAVELSETFLSQSGRNQYANSSSK--------KVMNLLNIAGEDQVTLKVTIAE 204
E ++T + ++ ++ KV+ N + V++KVTIAE
Sbjct: 326 YAIGESADTAPNADAFSENIPGGTEAGDYYVWYKVIGDENHNDSEPVSVKVTIAE 380
>gi|167620934|ref|ZP_02389565.1| Type II secretory pathway, component PulD [Burkholderia
thailandensis Bt4]
Length = 63
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R+ T L G +VL GL++D + G L P + +++ TE+
Sbjct: 2 NTRQLQTVTRLKDGEVVVLGGLIQDRNTSARSGYAWL---P---SFLDGRSSSKQRTEVL 55
Query: 412 IAA 414
+
Sbjct: 56 LVL 58
>gi|262360319|gb|ACY57040.1| putative membrane transport protein [Yersinia pestis D106004]
Length = 104
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 31/77 (40%)
Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
+ +A P L Q+AS G Y A ++ + + + TP +L G
Sbjct: 20 NQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNG 79
Query: 327 RIGLRIQTEVSEPVIGV 343
+I L ++ + P I +
Sbjct: 80 KIILDLKISQNMPGITI 96
>gi|283788190|ref|YP_003368055.1| Type IV pilus biogenesis protein [Citrobacter rodentium ICC168]
gi|30142048|gb|AAO17808.1| CfcD [Citrobacter rodentium]
gi|282951644|emb|CBG91344.1| putative Type IV pilus biogenesis protein [Citrobacter rodentium
ICC168]
Length = 489
Score = 48.2 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 20/303 (6%)
Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
+ G + K LD+ + +T + + + V D M + S
Sbjct: 171 LDFYGENNKTETTLDLSGNEATSSGGLTGKTETKFESSFWDDVED------MAKNYISSG 224
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
++ + + + ++ Q + I + ++ +K++
Sbjct: 225 NYNIFKDSSVLMVNSRPSEYEALSQALDKYKADNSRQFIVTYKIFTLDKNKVKELSAGLK 284
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ + + S G S + L AL + T R++ +
Sbjct: 285 LNFEDGHNTVKIGSSL---LDSLTGGISAGWKNSNVDINSGLDALYKLTGDRSIQSGSFI 341
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGL 330
+ + Y + + T ++ G TP VLS GRI +
Sbjct: 342 TRNNMAIPLNMTKSQNYVSGKTRTTDDNGEVNVEVETSSVVTGTSFIITPRVLSDGRIEV 401
Query: 331 RIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL-LKDDIQQLKEGIPL 387
E + +P+ +A + + G +++A +K++ L+ I
Sbjct: 402 VSGFTKRYLEGIDTYEDVQLPNVSTTEAFNSSIIMPGDLLMVAKYDVKEEKGGLEYQILG 461
Query: 388 LSK 390
+
Sbjct: 462 VGD 464
>gi|124262948|ref|YP_001023418.1| pilus (IV) biogenesis [Methylibium petroleiphilum PM1]
gi|124262194|gb|ABM97183.1| Pilus (IV) biogenesis [Methylibium petroleiphilum PM1]
Length = 460
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 57/476 (11%), Positives = 126/476 (26%), Gaps = 65/476 (13%)
Query: 1 MRYLQRTFFTMMSIFLF-----SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN 55
MR R +++ ++ + + + + +
Sbjct: 1 MRTKPRRAAFLLAPLTLALLSGCASILPGRSTDFPADKPVAGPNIPSSVAAQDLVELPV- 59
Query: 56 KVIILQVPVDVQDVLVSDPTKADVVV-----HSPRTMYLFGKNVGQANVILIGHDGKQML 110
+ L + D + + + V + L G + ++ + G
Sbjct: 60 QSATLDMQPAEPDDALPNTQVPPISVTGVGYIEALRLLLEGSSY---SLAVAGDVRAFEG 116
Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM------VRTIQDSQRAVELS 164
+ L + + + + + V V + D A L
Sbjct: 117 VSAGSLRTPAGPLRDVVEQLSRGGGFFLSVRGNKVTASATKRFVIEVPNLMDQPAAANLL 176
Query: 165 E------------TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL--KVTIAEVRRDIL 210
+ + + + SS + + L + L +V + +V
Sbjct: 177 ASLRRLGARDAYLDAIGNTITFEASRSSWQAIDGYLAHMRRSKPMLVYEVEVYQVELTDT 236
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
G + + + + G + G S V + V+ L+ +
Sbjct: 237 TNNGIGFTSLAKNLAGDPNNWSVARGG--TGIGSASFAFVGKNVTMAAVVDLLQTQGTVS 294
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------------DYGVVLHF 318
+L+ P + +SG S+ F G Y S S + G L
Sbjct: 295 SLSRPRVAMLSGSSSKFRVGQTTKYVAKISQQNTGSGSASTTTTSSADTDELKTGFELQM 354
Query: 319 TPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
++ + ++ +P R+ +T V G I+L GL
Sbjct: 355 KGGYQEGSVFTNLKLTISELIRFNDFEAFGTKLRLPDTTEREIETLVRARPGDLILLGGL 414
Query: 374 LKDDIQQL-KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
+ GI + N +EI +A P ++ A ++
Sbjct: 415 GSTKQNAGHEAGITGV-----------NKSTTASRSEIVVAMRPRVISFTAAKEAQ 459
>gi|330862440|emb|CBX72598.1| hypothetical protein YEW_HP33930 [Yersinia enterocolitica W22703]
Length = 347
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 24/147 (16%)
Query: 139 EMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
+ V L G+V +++ + L+ S+ S+ N + I
Sbjct: 191 QYRDQQVQLPGLVSVLREMSAGNHLPLAGEKESEDAPVSAPLFSADPRQNAVIIRDRQAN 250
Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
Q+ + VTI +V + Q+G S + S G SF +
Sbjct: 251 MPLYSSLITQLDQRPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGVSFNSGE---- 306
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALER 265
+ D + + +F L+AL+R
Sbjct: 307 AAPHSDGFSTVIGNTGNFMVRLNALQR 333
>gi|148553725|ref|YP_001261307.1| TPR repeat-containing protein [Sphingomonas wittichii RW1]
gi|148498915|gb|ABQ67169.1| Tetratricopeptide TPR_2 repeat protein [Sphingomonas wittichii RW1]
Length = 465
Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 40/280 (14%), Positives = 79/280 (28%), Gaps = 39/280 (13%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
+ ++ + R G + + + GD SV +S
Sbjct: 198 ILIEAFLIRDTRSAGLSDGINLLDSLALQFGGTLVNYSYDSAGHETRGDVSVTLPGISYS 257
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
L + A P + A G+++ F GG L ++ + D G+
Sbjct: 258 LNLAARDLS---RVSLEASPLVLARQGKTSKFLEGGSVLIVPLADDSDPVE---RDVGIT 311
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGTIVL 370
+ TP + + L + E+S + + + +P +++
Sbjct: 312 VEVTPEQIGEDYVDLAVVLELSNITGQSLSDAGRGASLLQTDKTRVEAAARVPFRKAVLV 371
Query: 371 A--GLLKDDIQQLKEGI----PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
G L + + P LS + + ++
Sbjct: 372 GSTGSLTRRKSGNRSLVAAPLPGLS----------TNGSSASRRDVLALI---------- 411
Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
+ R DD + DA A R+ P AS E +
Sbjct: 412 -SVRRADDQVTPPLDADA-LAKRLFDTALPAPASYGERPS 449
>gi|312962468|ref|ZP_07776959.1| invasion protein - outer membrane [Pseudomonas fluorescens WH6]
gi|311283395|gb|EFQ61985.1| invasion protein - outer membrane [Pseudomonas fluorescens WH6]
Length = 453
Score = 46.7 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 56/210 (26%), Gaps = 13/210 (6%)
Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
V + GM TI+ L + + +LL QV
Sbjct: 199 QKVRVPGMASTIEAL-----LVSEHKGPLADSSLGVIAYTDTNSLLIKGKPAQV----KF 249
Query: 203 AE--VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
E V + + + S+ D K + + + L+ +
Sbjct: 250 IEQLVAQLDTPKRAIEVSLWLVDVSRDDMKKLDLARKKKTSASNAHILEPLEDKQLMEQI 309
Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
ALER R + P + A F S YG + P
Sbjct: 310 TALERRRRARVVTLPVILTQENVPAVFEDNHTFYLPA--SDNDPADWKPVPYGAQVSVLP 367
Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
+ +I + I+ E V V P+
Sbjct: 368 RIAEANQIEMLIKVEDGRQVREVGRRGKPT 397
>gi|228471921|ref|ZP_04056691.1| hypothetical protein CAPGI0001_0005 [Capnocytophaga gingivalis ATCC
33624]
gi|228276773|gb|EEK15479.1| hypothetical protein CAPGI0001_0005 [Capnocytophaga gingivalis ATCC
33624]
Length = 386
Score = 46.3 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 8/93 (8%), Positives = 28/93 (30%), Gaps = 4/93 (4%)
Query: 52 IGLNKVIILQVPVDV---QDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGK 107
+ + + V + + A + + + L K G V + D +
Sbjct: 146 VKEGETTTITFSGVWNATDRVQIVNGEIAQLQGNVTDNKITLLAKKAGTTKVEIFTQDNR 205
Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
+ ++ + + L++ + + +
Sbjct: 206 SRGSFEVSVYTTASTLKLPHKNPLPHYRTDITN 238
Score = 45.5 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 58/175 (33%), Gaps = 18/175 (10%)
Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV---QDVLVSDPTKADVV-VHS 83
P +N + ++ + S+ + K + + V + + A +
Sbjct: 39 PTNPSNPSNPPVASSLKFTPENPSVEVEKTTTVGIVGTWNTTDKVKIDNEEVATLQGAVQ 98
Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
+ + GK G V ++ D K+ + ++ + + L F + + E +
Sbjct: 99 DNKLTVLGKKAGTTKVHILSADNKERGSFELTVSPKL------LLSFTPEKAVVKEGETT 152
Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
T+ G V D + ++ N + K+ L AG +V +
Sbjct: 153 TITFSG-VWNATDRVQI-------VNGEIAQLQGNVTDNKITLLAKKAGTTKVEI 199
>gi|149928551|ref|ZP_01916778.1| Type IV B pilus protein [Limnobacter sp. MED105]
gi|149822727|gb|EDM81987.1| Type IV B pilus protein [Limnobacter sp. MED105]
Length = 312
Score = 46.3 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 33/270 (12%), Positives = 69/270 (25%), Gaps = 52/270 (19%)
Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
QV +++ I V Q G + S V+ + +
Sbjct: 51 KQVHVQLDIYSVMSKKDDQQGVSWDVFFRSLSQRYGIGVLSPDSLVAPEAGLIALTIPEA 110
Query: 254 -------------------FSFETVLHALERATAIRTLAEPTLTAISGQ---SASFTSGG 291
+ ++ AL +L A++ Q A T+ G
Sbjct: 111 LQGFIPGQGTPNSQTNQRFGASSAIVQALNEIGDNVQHRPISLVALNRQWARKARLTTTG 170
Query: 292 QHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340
+SS + G P +L I L++ +S+
Sbjct: 171 YLSETKPASSGALGGGTGVPGLTTDEITTGDQFAAMPFILDNNTIMLKMGISLSDLTSLL 230
Query: 341 --IGVNAGDMPSYRVRKADT-----TVELPSGGTIVLAGLLKDDIQQLKEGI----PLLS 389
+ + + T+ L G + + GL +D + + PLL+
Sbjct: 231 EITTGTGETLQRVQTPNTSSISDQYTIALRPGEVMAITGLSRDVSGFTERKLTEQAPLLA 290
Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
+ + + ++
Sbjct: 291 G--------GSRNLSTMRENFIVLVRAVVL 312
>gi|325107283|ref|YP_004268351.1| peptidase M56 BlaR1 [Planctomyces brasiliensis DSM 5305]
gi|324967551|gb|ADY58329.1| peptidase M56 BlaR1 [Planctomyces brasiliensis DSM 5305]
Length = 789
Score = 46.3 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 36/285 (12%), Positives = 82/285 (28%), Gaps = 55/285 (19%)
Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
E + + + + + +V+++G + ++ E F
Sbjct: 500 RGRTTGTEPEISEDLPTAQVHWDGERWSVIVNG---PPEIHRQLSETVRAFNRS------ 550
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
G QV ++ I + D+++ G S S A +
Sbjct: 551 ---------------GYGQVAVETRIYMSQHDVMEAAGLSWDRIQSGRSESSLPAKNSED 595
Query: 237 KFVSEGGDFSVKGVLDRFSFE----TVLHALERATAIRTLAE------------PTLTAI 280
+ + VL S + ++ L+ +R + P LT
Sbjct: 596 RIDEITNSLNESNVLSNVSRQYHSPVMIAVLDNDQLLRFIKSAFIYVKPENMFAPKLTLR 655
Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRI 332
+GQS G Q + + ++ + L T + +
Sbjct: 656 NGQSGRLYDGVQRPFVVGVNQQEGGNLKPDVRIIEEGTSVKMRLDLTEDHTAVDLVAAVE 715
Query: 333 QTEVSEPVIGVN-------AGDMPSYRVRKADTTVELPSGGTIVL 370
+++S+ +P+ +T+ +L G T++L
Sbjct: 716 MSKISDVQTFTTQARGQRVTVQVPNVDKIHVETSSQLTDGETLLL 760
>gi|167042441|gb|ABZ07167.1| putative bacterial type II/III secretion system short domain
protein [uncultured marine microorganism
HF4000_ANIW133B20]
Length = 285
Score = 45.5 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 13/124 (10%)
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHF 318
R E LT + G+ A G + + ++ HD
Sbjct: 148 SQATSRRSGEQFLTVMDGERAFIQVGQSVPFTQQWVLLTSQYANIQQTIEFHDVTTGFAV 207
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
P + ++ + I +S + TTV P G + + G++++
Sbjct: 208 RPRYIGD-QVEVEITPRISRINARG------FIDFEQLSTTVRAPRGEWLDIGGIMQNHD 260
Query: 379 QQLK 382
+ +
Sbjct: 261 EVSR 264
>gi|167619352|ref|ZP_02387983.1| probable phage-related secreted protein [Burkholderia thailandensis
Bt4]
Length = 63
Score = 45.5 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
R+ T L G +VL GL++D + G L P + +++ TE+
Sbjct: 2 NTRQLQTVTRLTDGEVVVLGGLIQDRNSTARSGYAWL---P---SFLDGRSSSKQRTEVL 55
Query: 412 IAA 414
+
Sbjct: 56 LVL 58
>gi|91775192|ref|YP_544948.1| NolW-like protein [Methylobacillus flagellatus KT]
gi|91775336|ref|YP_545092.1| NolW-like protein [Methylobacillus flagellatus KT]
gi|91709179|gb|ABE49107.1| NolW-like protein [Methylobacillus flagellatus KT]
gi|91709323|gb|ABE49251.1| NolW-like protein [Methylobacillus flagellatus KT]
Length = 264
Score = 45.5 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 13/124 (10%)
Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHF 318
R E LT + G+ A G + + ++ HD
Sbjct: 127 SQATSRRSGEQFLTVMDGERAFIQVGQSVPFTQQWVLLTSQYANIQQTIEFHDVTTGFAV 186
Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
P + ++ + I +S + TTV P G + + G++++
Sbjct: 187 RPRYIGD-QVEVEITPRISRINARG------FIDFEQLSTTVRAPRGEWLDIGGIMQNHD 239
Query: 379 QQLK 382
+ +
Sbjct: 240 EVSR 243
>gi|331092338|ref|ZP_08341165.1| hypothetical protein HMPREF9477_01808 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401571|gb|EGG81154.1| hypothetical protein HMPREF9477_01808 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 317
Score = 45.5 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 12/130 (9%)
Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
A F ++ + S G + GV + + I ++ +S + +
Sbjct: 46 AFFGILFINMAQGSMSGQGLLLLAVVIAGVTGGIFSLLHAFASINMKADQTISGTALNMF 105
Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
A + R + ++ + +PLL IP++G LF + +
Sbjct: 106 APAFAIFVARMIQGVQQ------------IQFTDTFQIDKVPLLGDIPVIGPLFFQNSYI 153
Query: 405 REETEIFIAA 414
I I
Sbjct: 154 TTYLGILIFL 163
>gi|171913479|ref|ZP_02928949.1| probable penicillin resistance regulatory protein [Verrucomicrobium
spinosum DSM 4136]
Length = 768
Score = 45.1 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 66/231 (28%), Gaps = 70/231 (30%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV ++ I EV + L S G V+G+L
Sbjct: 509 DQQVLIRSFILEVEQGWL-----PWSDYGLQEPSKD---------------GLQVQGILS 548
Query: 253 RFSFETVLHALERATAIRTLAE-PTLTAISGQSASFTSGGQHLYKTVSSS---------- 301
+ + +L ++ ++++L P++ SGQ + +Y T
Sbjct: 549 KEQGQKLLTHVQSDKSVQSLTAAPSVATRSGQRTHVDMVREFIYPTEFDPPQLAQPPTTK 608
Query: 302 ---------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----- 341
T T+ G+ + F P V + + E+++ +
Sbjct: 609 DGKPIPGLGNLPIFPTTPTAFEMRPVGLRMEFDPVVQPGNVHRIELYWEITDFLGFMNYG 668
Query: 342 -------------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
N P + K T+ G +V+ G+
Sbjct: 669 NPIKAQVKDQNGKEKELLISENKIQQPIFETLKLTTSFSARDGEYVVIGGI 719
>gi|260587136|ref|ZP_05853049.1| ABC transporter, permease protein [Blautia hansenii DSM 20583]
gi|331082915|ref|ZP_08332036.1| hypothetical protein HMPREF0992_00960 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542507|gb|EEX23076.1| ABC transporter, permease protein [Blautia hansenii DSM 20583]
gi|330400056|gb|EGG79709.1| hypothetical protein HMPREF0992_00960 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 317
Score = 44.7 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 12/122 (9%)
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
++ + S G + GV + + I ++ +S + + A +
Sbjct: 54 NMTQANLSGQGLLLIAIVIAGVTGGIFSLLHAFASINMKADQTISGTALNMFAPAFAIFA 113
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
R + ++ + +P+L IP++G LF + + I I
Sbjct: 114 ARTIQEVQQ------------IQFTDTFQIDKVPVLGDIPVIGPLFFQNCYITTYIGILI 161
Query: 413 AA 414
Sbjct: 162 FL 163
>gi|126664703|ref|ZP_01735687.1| hypothetical protein MELB17_02655 [Marinobacter sp. ELB17]
gi|126631029|gb|EBA01643.1| hypothetical protein MELB17_02655 [Marinobacter sp. ELB17]
Length = 263
Score = 44.7 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 74/235 (31%), Gaps = 11/235 (4%)
Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL---KVTIAEVRRDIL 210
A S + + + + +N+ Q + + + + I+
Sbjct: 12 ASTHAFAAGQSRAYNLNQRPAADVAAQIRDLYEEVNVTVVGQKIVARGETRLLDEIGQII 71
Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
+Q+ + S + G V+ + + S + A + T
Sbjct: 72 QQLDVATAQLRISVQSREYLGGKRSGGGVNLTQNNASGSRNIINSNTVTISAQSKTTRSS 131
Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--TTHDYGVVLHFTPTVLSPGRI 328
E +L GQSA ++G + +V + TP ++SP I
Sbjct: 132 GNRERSLIVQDGQSAQVSAGQIRSLPFAARGGRNPAVLLQLVETRSGFVVTPRMISPQNI 191
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
E+S +A +P Y T ++ G + L G+ + + ++ +
Sbjct: 192 ------ELSIMSFEQDAPALPGYDTEALMTIRQVQPGQWVSLGGVERSESRENSD 240
>gi|269964602|ref|ZP_06178841.1| General secretion pathway protein D [Vibrio alginolyticus 40B]
gi|269830729|gb|EEZ84949.1| General secretion pathway protein D [Vibrio alginolyticus 40B]
Length = 367
Score = 44.3 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 18/138 (13%)
Query: 96 QANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
+ N ILI D K L ++ + D+ R + N + E + D VL G+ +
Sbjct: 232 RTNAILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKNAKAEDLVD--VLKGVSDNL 289
Query: 155 QDSQRA-----------VELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKV 200
Q ++A V ++ + S + + V++ L+I QV ++
Sbjct: 290 QAEKQAGQKTSGASRGEVVIAAHAATNSLVLTAPPDIMMALQDVISQLDIR-RAQVLIEA 348
Query: 201 TIAEVRRDILKQIGFQHS 218
I E+ +G Q
Sbjct: 349 LIVEMSEGDGINLGVQWG 366
>gi|257486849|ref|ZP_05640890.1| type II and III secretion system protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 57
Score = 44.0 bits (102), Expect = 0.049, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
V+L SG T++L+G +++ + I P L + ++ + + TP +
Sbjct: 2 KVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSILVVLITPIV 57
>gi|327540297|gb|EGF26883.1| hypothetical protein RBWH47_03922 [Rhodopirellula baltica WH47]
Length = 593
Score = 43.2 bits (100), Expect = 0.088, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 14/161 (8%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
P+ + + ++ + I N V L V ++ V V D + A
Sbjct: 419 IVPAALASHRGEFHRSVPATEAERSLRIEDTIQCDANDVTSLTVDGVIEAVRVEDDSIAR 478
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGH------DGKQMLNLDILIERDIAH--------LE 124
V+ + R + L G G+ V++ +++ L I ++ L
Sbjct: 479 VIGSTSRHLRLIGVRPGKTRVLVQQKLAGDAESIREIYELHITSPSNVRGGESQQEQSLM 538
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + +++++ D +++ G +D++ V L
Sbjct: 539 ELIEQKYRTASVQISRQGDRIIVQGECDDSRDAKEIVRLIR 579
>gi|311105342|ref|YP_003978195.1| lipoprotein 1 [Achromobacter xylosoxidans A8]
gi|310760031|gb|ADP15480.1| lipoprotein 1 [Achromobacter xylosoxidans A8]
Length = 528
Score = 43.2 bits (100), Expect = 0.088, Method: Composition-based stats.
Identities = 39/295 (13%), Positives = 86/295 (29%), Gaps = 39/295 (13%)
Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
R+ + + ++ + + + N V ++T+ +
Sbjct: 241 RSGVVADAVEGATSIVVTDTPEALERVARYLERENKALTRRVRLVFEEITVV---ANDAT 297
Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
G ++ +++G + A G +G ++ AL A+
Sbjct: 298 SGGIDWNVVYAAAGAAARLALPGAGAGGGSLDASMARGPFQGTQ--AIVSALSTMGAVVR 355
Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----------------THDYGVV 315
+ + ++ + + Y ST T G
Sbjct: 356 HNKVPILTLNRRPVTHAVRTTFSYIDRVQSTAVPGTTAGGANGSLPAVSISQKEETVGSF 415
Query: 316 LHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSG 365
L P + G+I L V++P+ + G + VEL G
Sbjct: 416 LTLLPDIQEDGQILLSLAYDNAVAQPLKTITFGERGNQVQVQQVTIDGNGTVQQVELRPG 475
Query: 366 GTIVLAGLLKDDIQQLKEGI-PLLSKIPIL-GALFRNSRFNREETEIFIAATPFL 418
I+++G + Q ++ + P L P++ G L + E + T +
Sbjct: 476 QPIIVSGFDRSQDQHDRQRLAPGL---PLIAGGL---DSASTERMTTLVLVTAQV 524
>gi|32475170|ref|NP_868164.1| hypothetical protein RB8056 [Rhodopirellula baltica SH 1]
gi|32445711|emb|CAD78442.1| hypothetical protein RB8056 [Rhodopirellula baltica SH 1]
Length = 593
Score = 43.2 bits (100), Expect = 0.089, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 14/161 (8%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
P+ + + ++ + I N V L V ++ V V D + A
Sbjct: 419 IVPAALASHRGEFHRSVPATEAERSLRIEDTIQCDANDVTSLTVDGVIEAVRVEDDSIAR 478
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGH------DGKQMLNLDILIERDIAH--------LE 124
V+ + R + L G G+ V++ +++ L I ++ L
Sbjct: 479 VIGSTSRHLRLIGVRPGKTRVLVQQKLAGDAESIREIYELHITSPSNVRGGESQQEQSLM 538
Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
+ + +++++ D +++ G +D++ V L
Sbjct: 539 ELIEQKYRTASVQISRQGDRIIVQGECDDSRDAKEIVRLIR 579
>gi|87308242|ref|ZP_01090383.1| hypothetical protein DSM3645_11766 [Blastopirellula marina DSM
3645]
gi|87288799|gb|EAQ80692.1| hypothetical protein DSM3645_11766 [Blastopirellula marina DSM
3645]
Length = 553
Score = 43.2 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 20/132 (15%)
Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------------STGATS 306
+L LE + LT ++G G + T S +
Sbjct: 384 MLEMLEDKKQYELIDSFDLTTVTGHETKVQQGRRQPVVTGSQMIPQRGPDGRATAMQRNQ 443
Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------GVNAGDMPSYRVRKADTT 359
+ G +L +P +L R L++ E S+ PS +T
Sbjct: 444 YNLQNVGTMLTVSPEML-GNRASLKLAFERSDVADPKEDKAEDDANDSPPSITTLIINTQ 502
Query: 360 VELPSGGTIVLA 371
+ L G +L+
Sbjct: 503 LLLEDGQATILS 514
>gi|238755357|ref|ZP_04616699.1| hypothetical protein yruck0001_7720 [Yersinia ruckeri ATCC 29473]
gi|238706392|gb|EEP98767.1| hypothetical protein yruck0001_7720 [Yersinia ruckeri ATCC 29473]
Length = 182
Score = 42.8 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 30/233 (12%), Positives = 63/233 (27%), Gaps = 59/233 (25%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
+ QV + I V ++ S V V +
Sbjct: 2 DRQVAIHTQILRVE------------APSNNKKIDWSAVVKSPFTDTPADEFSGVAIVDE 49
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
+ + + AL + + + T + A F +
Sbjct: 50 KPGAKGFISALSTQATVSVITQSTTLTTNQAVAPFQYQQESGSNNE-------------- 95
Query: 313 GVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT---TVELPSGG 366
GV + P ++ ++ L + ++ + G+ T V + SG
Sbjct: 96 GVNMTVLPLLMPSSSKMQLQLSLSGYDTQIQPFSSGGNTVELTKTHLKTFTQRVNIQSGQ 155
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
T+VL+G+ +++ R +T I TP ++
Sbjct: 156 TLVLSGM-------------------------SSNQGERHKT--LILITPVIL 181
>gi|163856306|ref|YP_001630604.1| putative outer membrane lipoprotein [Bordetella petrii DSM 12804]
gi|163260034|emb|CAP42335.1| putative outer membrane lipoprotein [Bordetella petrii]
Length = 531
Score = 42.8 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 29/242 (11%), Positives = 63/242 (26%), Gaps = 31/242 (12%)
Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
V + + G S+ + + + +V ++ A
Sbjct: 291 ITVVANDSAEGGIDWKAVYDSARAAVAATLPVAAGGAAAALGATVDS-GPFQGTRAIVSA 349
Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-------------- 308
L + A+ + + ++ + + Y ST +
Sbjct: 350 LSQTGAVLRHSSVPVLTLNRRPVTHAVRTTFSYIDQVQSTAVPGIDAALGSTALPSVSIS 409
Query: 309 --THDYGVVLHFTPTVLSPGRIGL------RIQTEVSEPVIGVNAGDMP----SYRVRKA 356
G L P + GRI L + + G + +
Sbjct: 410 QKQETVGTFLTLVPDAQADGRILLSIAYDNTVAQPIKSVTFGTQGNQIQVQQITIDGNGT 469
Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
V L G ++L+G + + + L + P+L R + E + T
Sbjct: 470 VQQVALSPGQPVILSGFDRRQDEYDRRR--LSADAPLLAG--GQDRASSERLTTVVLVTA 525
Query: 417 FL 418
+
Sbjct: 526 QV 527
>gi|326336569|ref|ZP_08202738.1| hypothetical protein HMPREF9071_2204 [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325691234|gb|EGD33204.1| hypothetical protein HMPREF9071_2204 [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 607
Score = 42.4 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 55/153 (35%), Gaps = 18/153 (11%)
Query: 48 KKISIGLNKVIILQVPV---DVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIG 103
+ +SI K I+ + V ++D A + + + L K VG V +
Sbjct: 280 ESVSIEEGKTTIVTITGVWNTTDRVQITDGEVAALQGEVTDNKITLLAKKVGATKVEVFT 339
Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNI-------------RVEMVSDTVV-LHG 149
+G+ + ++ + + ++ + R+++ ++ +V L G
Sbjct: 340 KEGQSRGSFEVTVTPKLLLTFNPVKAVVKKEETTTVTIIGVWNTTDRIQIANNEIVELKG 399
Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
V + + A ++ T + + + S +
Sbjct: 400 GVTNNKITLLAKKVGNTKVEIFTADNRSRGSFE 432
Score = 41.7 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 8/67 (11%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 67 QDVLVSDPTKADVVV-HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
+ +++ ++ + + L K VG V + D + + ++ + L++
Sbjct: 385 DRIQIANNEIVELKGGVTNNKITLLAKKVGNTKVEIFTADNRSRGSFEVSVYTLANTLKL 444
Query: 126 TLRRFIA 132
+ I
Sbjct: 445 AYKADIP 451
Score = 41.3 bits (95), Expect = 0.36, Method: Composition-based stats.
Identities = 39/324 (12%), Positives = 89/324 (27%), Gaps = 32/324 (9%)
Query: 51 SIGLNKVIILQVPVDV---QDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDG 106
+ + K + + V ++D + + L K VG V ++ DG
Sbjct: 117 EVEIGKATTVTIVGTWNTTDKVQIADKEIVTQQGEVTDNKINLLAKKVGTTKVSVLTADG 176
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM--------VRTIQDSQ 158
+ + +I + L I E + + + G V + +
Sbjct: 177 RNRGSFEITVTPIAE-----LHFTPERPEIE-EGKTAEITIVGTWNTSDKVKVENTEIVE 230
Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
+ E++ ++ + N + G QV V +L +
Sbjct: 231 QQGEVTNNKITLLAKKVGDTKVEIFTANG-HKRGSFQVI-------VTPKLLLSFSPESV 282
Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
+ + + D V + + + + L + + +
Sbjct: 283 SIEEGKTTIVTITGVWNTTDRVQITDGEVAALQGEVT-DNKITLLAKKVGATKV---EVF 338
Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
GQS ++ + V + + + RI + E+ E
Sbjct: 339 TKEGQSRGSFEVTVTPKLLLTFNPVKAVVKKEET-TTVTIIGVWNTTDRIQIANN-EIVE 396
Query: 339 PVIGVNAGDMPSYRVRKADTTVEL 362
GV + + +T VE+
Sbjct: 397 LKGGVTNNKITLLAKKVGNTKVEI 420
Score = 40.1 bits (92), Expect = 0.81, Method: Composition-based stats.
Identities = 38/364 (10%), Positives = 107/364 (29%), Gaps = 31/364 (8%)
Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV---QDVLV 71
+ + + ++ A + + + + K + + V +
Sbjct: 1 MALAMSLLIISCKKSEKEVEAPPTQLKFTPERTE---VEVGKTATVTIVGTWNKTDKVQI 57
Query: 72 SDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
++ + + L K VG V ++ DG+ N ++ + L
Sbjct: 58 ANKEIITQQGEVTDNKINLLAKKVGTTKVNVLTADGRNRGNFEVTVTP-----TSELHFT 112
Query: 131 IADSNIRVEMVSDTVVLHG---MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
+ + + TV + G +Q + + + + ++ + N A +++
Sbjct: 113 PKKPEVEI-GKATTVTIVGTWNTTDKVQIADKEIVTQQGEVTDNKINLLAKKVGTTKVSV 171
Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
L G ++ + ++T+ + ++ F G + + +
Sbjct: 172 LTADGRNRGSFEITV-----TPIAELHFTPERPEIEEGKTAEITIVGTWNTSDKVKVENT 226
Query: 248 KGVLDRFSF-ETVLHALERA-TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
+ V + + L + + + +G +S S +
Sbjct: 227 EIVEQQGEVTNNKITLLAKKVGDTKV----EIFTANGHKRGSFQVIVTPKLLLSFSPESV 282
Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL--P 363
S+ + + T + R+ + EV+ V + + T VE+
Sbjct: 283 SIEEGKTTI-VTITGVWNTTDRVQITDG-EVAALQGEVTDNKITLLAKKVGATKVEVFTK 340
Query: 364 SGGT 367
G +
Sbjct: 341 EGQS 344
>gi|154505040|ref|ZP_02041778.1| hypothetical protein RUMGNA_02550 [Ruminococcus gnavus ATCC 29149]
gi|153794519|gb|EDN76939.1| hypothetical protein RUMGNA_02550 [Ruminococcus gnavus ATCC 29149]
Length = 317
Score = 42.4 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 12/106 (11%)
Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
++++ S G + G+ + + I ++ +S + + A +
Sbjct: 54 NIFQGTLSGQGLFLLAMLVAGLTGGLFSLLHAFASINMKADQTISGTALNLFAPAFAIFT 113
Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
R ++ T + +P+L IP++G LF
Sbjct: 114 ARMIQGMQQIQFTDTFHI------------NKVPVLGDIPVIGDLF 147
>gi|3341598|emb|CAA13143.1| z43r [Vibrio cholerae]
Length = 166
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
QV L+ I EV Q G S SS+G + +
Sbjct: 123 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGS 166
>gi|213422219|ref|ZP_03355285.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 124
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 45/161 (27%)
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
L+ L++ A NI++ DT L G V I+ +A+++++
Sbjct: 4 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 54
Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
V L + I ++ + L+++G S + G
Sbjct: 55 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 83
Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
+ + S LD F ++ALE ++ P L
Sbjct: 84 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVL 124
>gi|220934554|ref|YP_002513453.1| hypothetical protein Tgr7_1381 [Thioalkalivibrio sp. HL-EbGR7]
gi|219995864|gb|ACL72466.1| hypothetical protein Tgr7_1381 [Thioalkalivibrio sp. HL-EbGR7]
Length = 293
Score = 42.0 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 8/124 (6%)
Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVT 308
+ + R T R E + GQ A G ++ T V
Sbjct: 140 AGEIDAQGRVVRRYTTTRRNGEQWVRVQEGQQAHIREGEVIPMASIAYLRRDGTLVGGVD 199
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
TP ++ GR+ L + + + R +T V + +G +
Sbjct: 200 YQGLDRGFVVTPHLMPDGRVRLH----IVQIAERESPAGGGRIETRGLETVVTIETGEWV 255
Query: 369 VLAG 372
L G
Sbjct: 256 DLGG 259
>gi|325271166|ref|ZP_08137720.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
gi|324103699|gb|EGC00992.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
Length = 53
Score = 42.0 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
++ I+L GL ++ G+ L P LFR++ +EI +
Sbjct: 1 QMRDREVILLGGLTEEKTSDNSTGLSFL---P---KLFRSNTSEASNSEILLVI 48
>gi|87312053|ref|ZP_01094160.1| hypothetical protein DSM3645_15135 [Blastopirellula marina DSM 3645]
gi|87285222|gb|EAQ77149.1| hypothetical protein DSM3645_15135 [Blastopirellula marina DSM 3645]
Length = 1719
Score = 42.0 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 13/163 (7%)
Query: 248 KGVLDRFSFETVLHAL---ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302
+ + +F + + ++ L P+L + S Q +
Sbjct: 1385 GALANDPTFLAAAQLMGGAQPNGVVQNLY-PSLPTNKDEERLGFSTPQPNQSGSALQDLV 1443
Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGL-----RIQTEVSEPVIGVNAGDMPSYRVRKAD 357
S+ + G P + G + T + EPV + + +
Sbjct: 1444 PDPSIYKFETGTGFEIRPVIQPDGYSIIYDFNYMYTTNIREPVQADEK-HLGRIKRHFIN 1502
Query: 358 TTVELPSGGTIVLAGL-LKDDIQQLKEGIPLLSKIPILGALFR 399
T V+ S +++ + + +G+PLL IP++G FR
Sbjct: 1503 TQVQTSSFELRLISRYQVALKAARTSQGVPLLQDIPVVGLAFR 1545
>gi|325972807|ref|YP_004248998.1| ABC transporter inner membrane protein [Spirochaeta sp. Buddy]
gi|324028045|gb|ADY14804.1| ABC-type transporter, integral membrane subunit [Spirochaeta sp.
Buddy]
Length = 310
Score = 41.7 bits (96), Expect = 0.26, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 17/136 (12%)
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-----TVLSPGR 327
+E + G G T+ + V G+++ + +
Sbjct: 29 SERSGVTNLGLEGLMLVGYFASAITIKMTEATLGVQALPVGILVGVAAGAIFSLLHAFAS 88
Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
I L+ +S I + A + Y R SG +L G+++ + IP+
Sbjct: 89 INLKADQVISGTAINMLAAALTVYLARTIS-----GSGNVRILMGIVRKN-------IPV 136
Query: 388 LSKIPILGALFRNSRF 403
LS+IPI+G LF + +
Sbjct: 137 LSQIPIIGPLFFSQSY 152
>gi|228476681|ref|ZP_04061352.1| fimbrial assembly protein PilQ [Streptococcus salivarius SK126]
gi|228251680|gb|EEK10775.1| fimbrial assembly protein PilQ [Streptococcus salivarius SK126]
Length = 173
Score = 41.7 bits (96), Expect = 0.26, Method: Composition-based stats.
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
++ ++I QV ++ I + K++G + I + +
Sbjct: 131 LIRQIDIP-VQQVMIEARIVSATDNFSKELGVKWGILSNGVANN 173
>gi|6176558|gb|AAF05619.1|AF190907_1 XpsD [Xanthomonas oryzae pv. oryzae]
Length = 124
Score = 41.3 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 18/109 (16%)
Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--------- 234
V+ L++ QV ++ +AEV Q G S + + S A
Sbjct: 17 VIEKLDV-MPMQVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGIGAGAGLA 75
Query: 235 --------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
G G+ + + +++HAL+ T +R L P
Sbjct: 76 SAAGRNIWGDIAGKITGEKGAQWTFLGKNAASIIHALDEVTNVRLLQTP 124
>gi|115374949|ref|ZP_01462221.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1]
gi|310819208|ref|YP_003951566.1| hypothetical protein STAUR_1935 [Stigmatella aurantiaca DW4/3-1]
gi|115368076|gb|EAU67039.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1]
gi|309392280|gb|ADO69739.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 249
Score = 41.3 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 69 VLVSDPTKADVVVHS-PRTMYLFGKNVGQANVILIGHDGKQMLNLDILI------ERDIA 121
V V DP+ A V S + L GK G ++L + +L +
Sbjct: 53 VEVEDPSIATAEVLSGSNELLLTGKRPGSTLLLLYAEGKFAVWSLSVAEPGARPPAAPAP 112
Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
L T R+ + V+ + ++L V+ + L +T
Sbjct: 113 GLLATARKACPG--LEVKEAPERLLLA-TVKDAPCRTALLALFQT 154
>gi|289449367|ref|YP_003474976.1| branched-chain amino acid ABC transporter permease [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289183914|gb|ADC90339.1| branched-chain amino acid ABC transporter, permease protein
[Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 317
Score = 40.9 bits (94), Expect = 0.45, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I ++ +S + + A + R+ +T ++P T + + IP
Sbjct: 88 SINMKADQTISGTALNMFAPAFVIFIAREINTIQQIPFEDTFHI------------DRIP 135
Query: 387 LLSKIPILGALF 398
L+ IP+LG +F
Sbjct: 136 FLADIPVLGPMF 147
>gi|160878916|ref|YP_001557884.1| inner-membrane translocator [Clostridium phytofermentans ISDg]
gi|160427582|gb|ABX41145.1| inner-membrane translocator [Clostridium phytofermentans ISDg]
Length = 317
Score = 40.9 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I ++ +S + + A + R+ ++ T + +P
Sbjct: 88 SIHMKADQTISGTALNMFAPAFAIFTARQIQGVQQINFDNTF------------RIQKVP 135
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+L IPILG L + + + +V
Sbjct: 136 VLGDIPILGELLFQNSYITTYLGFLVLIIASIV 168
>gi|297517523|ref|ZP_06935909.1| general secretion pathway protein D precursor [Escherichia coli
OP50]
Length = 451
Score = 40.9 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 1/94 (1%)
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
G V + ++ + Q S + V+ L+I QV ++ I EV
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
G Q + + + G +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAA 408
>gi|124009380|ref|ZP_01694058.1| hypothetical protein M23134_03707 [Microscilla marina ATCC 23134]
gi|123985042|gb|EAY24993.1| hypothetical protein M23134_03707 [Microscilla marina ATCC 23134]
Length = 1246
Score = 40.9 bits (94), Expect = 0.50, Method: Composition-based stats.
Identities = 34/312 (10%), Positives = 79/312 (25%), Gaps = 34/312 (10%)
Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
+ ++ PT A V V S T+ + + Q + +
Sbjct: 334 TIDIAPPTIASVQVLSATTVEVT-----------FNENVDQTTAETLTNYSIDNGIGNPA 382
Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-----QYANSSSK 182
+ +N + ++ L + + +L+ ++ + + Y S
Sbjct: 383 TATLDGTNKALAHLTLGSPLIDLTNYTLTIENVKDLANNAITSASQGFQYLAPYTPSQRD 442
Query: 183 KVMNLLNIAGEDQVTL-KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
V+N + QV L +V E+ + I + G+FV
Sbjct: 443 IVINEIFADPSPQVGLPEVEFVELFNATNRPIDISGWKLDGVNTSGFPTFVLKSGEFVVL 502
Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG---QSASFTSGGQHLYKTV 298
+ + L + + ++ Q + Y
Sbjct: 503 TSPGNEGLFSG--------NVLSWGGSGTLTNGGEVLTLTNASDQVVDRVNYSDEWYNDN 554
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
+ S G S+ + T + + P+ +
Sbjct: 555 NKSNGGYSLEQMNPTTRCTGTNNWTASSSASGGTPGAQNSVFDTTPDQKAPTINLTS--- 611
Query: 359 TVELPSGGTIVL 370
L + T+ +
Sbjct: 612 ---LKNDSTLAI 620
>gi|110801614|ref|YP_698866.1| sugar ABC transporter [Clostridium perfringens SM101]
gi|110682115|gb|ABG85485.1| ABC transporter, permease protein [Clostridium perfringens SM101]
Length = 317
Score = 40.9 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 22/167 (13%)
Query: 253 RFSFETVLHAL-----ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
F+ ++ AL ER+ + + + S A S Q + S
Sbjct: 14 AFTIPLLITALGALFSERSGVVNIGLDGLMIVGSFSGAFTVSKLQEVMPGSSLPLWIGLG 73
Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
G++ + + I L +S I + AG + + R SG
Sbjct: 74 VAVLVGILFSL---LHAFASINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNI 125
Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
++ G + D +PLLS IP++G LF + + T + I
Sbjct: 126 RIMQGFIPKD-------VPLLSSIPVIGDLFFSKTYAT--TWLVILI 163
>gi|254224924|ref|ZP_04918539.1| Type II secretory pathway, component PulD [Vibrio cholerae V51]
gi|125622612|gb|EAZ50931.1| Type II secretory pathway, component PulD [Vibrio cholerae V51]
Length = 405
Score = 40.9 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 31/253 (12%), Positives = 70/253 (27%), Gaps = 47/253 (18%)
Query: 69 VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
+ V D + A D V+ P L + N+ + + L + +
Sbjct: 177 ISVMDRSIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234
Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
L + ++ S+ +++ G ++ + A ++
Sbjct: 235 LEEDEKSTKVQALPGSNALLVRGT---QEEVKLAKRIAA--------------------- 270
Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
L+++ Q+ + + ++ + + +G S G F
Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDIVVPPFT----------- 318
Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
+ F AL R++ E L A+ Q F + S
Sbjct: 319 -----ETTDFLKNFQALYTNGIARSVYETNLLALENQQGQFGKKQTATLTLI--SDKEVK 371
Query: 307 VTTHDYGVVLHFT 319
+ L+ T
Sbjct: 372 TEKIEADNSLYVT 384
>gi|54308981|ref|YP_130001.1| hypothetical protein PBPRA1792 [Photobacterium profundum SS9]
gi|46913411|emb|CAG20199.1| hypothetical protein PBPRA1792 [Photobacterium profundum SS9]
Length = 124
Score = 40.9 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
+PLL IP +G L R + +++ + ++
Sbjct: 1 MPLLKDIPWIGGLLRTTSDKSVSSQMSVLIKVTVI 35
>gi|313201537|ref|YP_004040195.1| nolw domain-containing protein [Methylovorus sp. MP688]
gi|312440853|gb|ADQ84959.1| NolW domain protein [Methylovorus sp. MP688]
Length = 269
Score = 40.9 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 19/231 (8%)
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT--LKVTIAEVRRDILKQIGFQHSI 219
++ + + ++ + N L I + ++ + ++ + + S
Sbjct: 27 RFAQELVPIVAPMVGEDGNASAIDNHLVIRASPERMQAIEELVVKL-DTARRNMRITVSH 85
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA-LERATAIRTLA-EPTL 277
SG ++ A G + +G + + E L+ L++ R+ +
Sbjct: 86 EDMQSGNQQNIGAS-GNVRIGQGQVIVQRRMPGDLPPENNLNIDLDQREYSRSQQGSEFV 144
Query: 278 TAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
G+ A G + Y + + D P L
Sbjct: 145 NVAEGERAFIRVGQRVPYTQQWLVLTQSYAQRIRNTQFQDITTGFAVRPRALGD------ 198
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
Q EV AG + T V + G + + G ++ +
Sbjct: 199 -QVEVEITPRIAQAGAGGVIDFEELSTIVMVRPGEWLDIGGTMQSRDDVSR 248
>gi|160892053|ref|ZP_02073056.1| hypothetical protein BACUNI_04513 [Bacteroides uniformis ATCC 8492]
gi|156858531|gb|EDO51962.1| hypothetical protein BACUNI_04513 [Bacteroides uniformis ATCC 8492]
Length = 681
Score = 40.5 bits (93), Expect = 0.64, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 3/145 (2%)
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
D T ADV + + LF K GQ N++ G+ + ++ + + ++
Sbjct: 384 GDQTIADVRTNRDSRLSLFLKEPGQTNIVWDDQPGQSLNLIEPVPNIIVGDMQRAYTTGY 443
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
A + L G V + + L + R ++++ +
Sbjct: 444 ALRKGGALNSKYCIQLKGYVA-LVCYRAVEALLNYMEASYERTGTLDATALGYWQAIRSR 502
Query: 192 GEDQVTLKVTIA--EVRRDILKQIG 214
+ TIA E+ ++ G
Sbjct: 503 AGISTDIDATIAATEMDKEAENDWG 527
>gi|150004697|ref|YP_001299441.1| hypothetical protein BVU_2158 [Bacteroides vulgatus ATCC 8482]
gi|149933121|gb|ABR39819.1| putative outer membrane protein, probably involved in nutrient
binding [Bacteroides vulgatus ATCC 8482]
Length = 681
Score = 40.5 bits (93), Expect = 0.64, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 3/145 (2%)
Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
D T ADV + + LF K GQ N++ G+ + ++ + + ++
Sbjct: 384 GDQTIADVRTNRDSRLSLFLKEPGQTNIVWDDQPGQSLNLIEPVPNIIVGDMQRAYTTGY 443
Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
A + L G V + + L + R ++++ +
Sbjct: 444 ALRKGGALNSKYCIQLKGYVA-LVCYRAVEALLNYMEASYERTGTLDATALGYWQAIRSR 502
Query: 192 GEDQVTLKVTIA--EVRRDILKQIG 214
+ TIA E+ ++ G
Sbjct: 503 AGISTDIDATIAATEMDKEAENDWG 527
>gi|322835199|ref|YP_004215225.1| Ig domain protein group 2 domain protein [Rahnella sp. Y9602]
gi|321170400|gb|ADW76098.1| Ig domain protein group 2 domain protein [Rahnella sp. Y9602]
Length = 245
Score = 40.5 bits (93), Expect = 0.65, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV-------DVQDVLVSDPTKADV 79
P + E+N A S+ + + ++ V V +V +DPT A +
Sbjct: 147 PALAESNQAAAVPVTGVTVTQSTTSVVVGQNAVITVAVLPDGATNGAFNVAAADPTVATL 206
Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
V S T+ G G +I++ +DG+++
Sbjct: 207 TV-SGNTVTAKGLKAGTTQLIVMTNDGQKVA 236
>gi|293372378|ref|ZP_06618762.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
gi|292632561|gb|EFF51155.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
Length = 394
Score = 40.5 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 14/161 (8%), Positives = 45/161 (27%), Gaps = 15/161 (9%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK----VII 59
++R + I L + + + ++I L++
Sbjct: 1 MKRNIIHLTGIALCAIGLFSG--------CNEDLPSYTSLTVDAETLTINLDETTEGSFN 52
Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
+ V S+ A V S + + G G A + +I ++ +
Sbjct: 53 ITGGNSGYKVSSSNAAVATA-VISGNEVIVTGLKYGTATLTVIDWTKNSANVKVVVAQEQ 111
Query: 120 IAHLEMTLRRFIADS--NIRVEMVSDTVVLHGMVRTIQDSQ 158
++ + + + + + + ++ ++
Sbjct: 112 ELAVKTSSTTMFFEEHKTLEIYTGNGGYSITSSNESVATAK 152
>gi|261257911|ref|ZP_05950444.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK966]
Length = 374
Score = 40.5 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
+ V++ L+I QV ++ IAE++ +G Q +
Sbjct: 319 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFT 374
>gi|204927748|ref|ZP_03218949.1| putative phage-related secreted protein [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204323090|gb|EDZ08286.1| putative phage-related secreted protein [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|320085966|emb|CBY95740.1| putative phage-related secreted protein [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 71
Score = 40.1 bits (92), Expect = 0.70, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
+ P+ R T V L G I+L GL +
Sbjct: 2 TTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQSD 40
>gi|237721885|ref|ZP_04552366.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448754|gb|EEO54545.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 394
Score = 40.1 bits (92), Expect = 0.71, Method: Composition-based stats.
Identities = 14/161 (8%), Positives = 45/161 (27%), Gaps = 15/161 (9%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK----VII 59
++R + I L + + + ++I L++
Sbjct: 1 MKRNIIHLTGIALCAIGLFSG--------CNEDLPSYTSLTVDAETLTINLDETTEGSFN 52
Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
+ V S+ A V S + + G G A + +I ++ +
Sbjct: 53 ITGGNSGYKVSSSNAAVATA-VISGNEVIVTGLKYGTATLTVIDWTKNSANVKVVVAQEQ 111
Query: 120 IAHLEMTLRRFIADS--NIRVEMVSDTVVLHGMVRTIQDSQ 158
++ + + + + + + ++ ++
Sbjct: 112 ELAVKTSSTTMFFEEHKTLEIYTGNGGYSITSSNESVATAK 152
>gi|6979180|gb|AAF34347.1| OmpA [Rickettsia sp. DnS28]
Length = 1060
Score = 40.1 bits (92), Expect = 0.71, Method: Composition-based stats.
Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
+++ G+ L + + + + TV L+ +
Sbjct: 311 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 367
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212
+ T +N +S + +L + + VT+ V I E++
Sbjct: 368 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGVDVKIGEIQGTGTNT 426
Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
+ G + G + + + G + SF + ++A
Sbjct: 427 LTLPANFNLTGSINKTGGQALKLNFTNGGSVNGVVGTAANSVGDITTAGATSFASSVNAK 486
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
AT T + +G + K V++++ + T ++G L F +
Sbjct: 487 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 546
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373
G L + + + DM + K+ + + SG T+ L+G+
Sbjct: 547 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 600
>gi|253999512|ref|YP_003051575.1| NolW domain-containing protein [Methylovorus sp. SIP3-4]
gi|253986191|gb|ACT51048.1| NolW domain protein [Methylovorus sp. SIP3-4]
Length = 286
Score = 40.1 bits (92), Expect = 0.79, Method: Composition-based stats.
Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 19/231 (8%)
Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT--LKVTIAEVRRDILKQIGFQHSI 219
++ + + ++ + N L I + ++ +A++ + + S
Sbjct: 44 RFAQELVPIVAPIVGEDGNASAIDNHLVIRASPERMQAIEELVAKL-DTARRNMRITVSH 102
Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA-LERATAIRTLA-EPTL 277
SG ++ A G + +G + + E L+ L++ R+ +
Sbjct: 103 EDMQSGNQQNIGAS-GNVRIGQGQVILQRRMPGDLPPENNLNIDLDQREYSRSQQGSEFV 161
Query: 278 TAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
G+ A G + Y + + D P L
Sbjct: 162 NVAEGERAFIRVGQRVPYTQQWLVLTQSYAQRIRNTQFQDITTGFAVRPRALGD------ 215
Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
Q EV AG + T V + G + + G ++ +
Sbjct: 216 -QVEVEITPRIAQAGAGGVIDFEELSTIVMVRPGEWLDIGGTMQSRDDVSR 265
>gi|223985201|ref|ZP_03635286.1| hypothetical protein HOLDEFILI_02592 [Holdemania filiformis DSM
12042]
gi|223962818|gb|EEF67245.1| hypothetical protein HOLDEFILI_02592 [Holdemania filiformis DSM
12042]
Length = 1122
Score = 40.1 bits (92), Expect = 0.84, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 19/144 (13%)
Query: 52 IGLNKVIILQVPVDVQDVLV---SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD--- 105
+ +N+ L + +V+D ++ +DP+ D + + GK G + + +
Sbjct: 982 LLVNEPTKLHLDRNVEDQIIWNIADPSILD---LDEENLEITGKKPGITKLTAMMNGISS 1038
Query: 106 --GKQMLNLDILIE--RDIAHLEMTLRRFIADSNIRV------EMVSDTVVLHGMVRTIQ 155
+ ++D+ + + + + IRV E V+D V L +
Sbjct: 1039 TLSVTVYSIDVNSKLSIRVEDYQSAGLEIGEERQIRVVGSIGQEEVNDRVTLTSSNPKVA 1098
Query: 156 DSQRAVELSETFLSQSGRNQYANS 179
A +L L +
Sbjct: 1099 VIDEAGKLKAIGLGTTTITAAVKE 1122
>gi|168698533|ref|ZP_02730810.1| hypothetical protein GobsU_03369 [Gemmata obscuriglobus UQM 2246]
Length = 635
Score = 39.7 bits (91), Expect = 0.97, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 55/197 (27%), Gaps = 40/197 (20%)
Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
G G V + L A + L+ P + Q+ G +
Sbjct: 447 GLTTERGTSGCVLTPREAERLNDFLRAAKEKGECEVLSRPLVQVADNQTGYVQIGQNYPV 506
Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYR 352
V + G L TP + S G+ +++ TEV V +P
Sbjct: 507 ALAGG-----KVESKFAGTALRVTPCLASDGQ-TVKLTTEVQNGKVIPGTVMTAFVPGTT 560
Query: 353 ------------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
V++ V +P+G T V+A +P+
Sbjct: 561 FPVTTLMPATVCVQEVRANVAVPAGHTAVVA-------------------VPVAEPAAGG 601
Query: 401 SRFNREETEIFIAATPF 417
+ T+ + TP
Sbjct: 602 GARSGSRTQTIVVLTPT 618
>gi|296388395|ref|ZP_06877870.1| general secretion pathway protein D [Pseudomonas aeruginosa PAb1]
Length = 357
Score = 39.7 bits (91), Expect = 1.00, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 69/236 (29%), Gaps = 28/236 (11%)
Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
P L + ANA +I+ I + + + L++ V
Sbjct: 126 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 181
Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133
D V + K A VI + ++ + L +L A+
Sbjct: 182 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 241
Query: 134 SNIRVEMVSDTVVL--------HGMVRTIQDSQRAVELSETFLSQSGRNQYANS------ 179
+ + +D L GM ++ N+
Sbjct: 242 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALILLAD 301
Query: 180 -----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
+ + ++ L++ QV ++ I E+ DI +G Q +I G +++
Sbjct: 302 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTRTN 356
>gi|197262271|ref|ZP_03162345.1| putative phage-related secreted protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|200389824|ref|ZP_03216435.1| putative phage-related secreted protein [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205357882|ref|ZP_03223866.1| putative phage-related secreted protein [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205359009|ref|ZP_03224191.1| putative phage-related secreted protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|197240526|gb|EDY23146.1| putative phage-related secreted protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|199602269|gb|EDZ00815.1| putative phage-related secreted protein [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205328947|gb|EDZ15711.1| putative phage-related secreted protein [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205339559|gb|EDZ26323.1| putative phage-related secreted protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|267993459|gb|ACY88344.1| putative phage-related secreted protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|321224172|gb|EFX49235.1| putative phage-related secreted protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
Length = 71
Score = 39.7 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
+ P+ R T V L G I+L GL +
Sbjct: 2 TTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQSD 40
>gi|198459322|ref|XP_001361339.2| GA20669 [Drosophila pseudoobscura pseudoobscura]
gi|198136652|gb|EAL25917.2| GA20669 [Drosophila pseudoobscura pseudoobscura]
Length = 1857
Score = 39.7 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 14/145 (9%)
Query: 71 VSDPTKADVVV-----HSPRTMY--LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
V +P +V + P + + GKN+G+ ++ G Q ++ + ++ + A +
Sbjct: 1016 VFNPNILNVRLDMQHNLRPGQIRYSITGKNIGETKIVFQSGKGSQQVSSEPIVVQVFAPI 1075
Query: 124 EMTLRR--FIADSNIRVEMVSD---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
+ R + S+I++ L V Q + + + +
Sbjct: 1076 RLYPRDSTLLVGSSIQIYSQGGPQPNTNLIYTVEKEQVATMSSAIVTAHRLGASNITGKC 1135
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIA 203
V + Q T++V +A
Sbjct: 1136 LMKNPVTGKDEV--VSQDTIEVRVA 1158
>gi|110799128|ref|YP_696263.1| ABC transporter, permease protein [Clostridium perfringens ATCC
13124]
gi|168206804|ref|ZP_02632809.1| ABC transporter, permease protein [Clostridium perfringens E str.
JGS1987]
gi|168209351|ref|ZP_02634976.1| ABC transporter, permease protein [Clostridium perfringens B str.
ATCC 3626]
gi|168213546|ref|ZP_02639171.1| ABC transporter, permease protein [Clostridium perfringens CPE str.
F4969]
gi|168217678|ref|ZP_02643303.1| ABC transporter, permease protein [Clostridium perfringens NCTC
8239]
gi|169342761|ref|ZP_02863797.1| ABC transporter, permease protein [Clostridium perfringens C str.
JGS1495]
gi|182626038|ref|ZP_02953800.1| ABC transporter, permease protein [Clostridium perfringens D str.
JGS1721]
gi|110673775|gb|ABG82762.1| ABC transporter, permease protein [Clostridium perfringens ATCC
13124]
gi|169299018|gb|EDS81090.1| ABC transporter, permease protein [Clostridium perfringens C str.
JGS1495]
gi|170661774|gb|EDT14457.1| ABC transporter, permease protein [Clostridium perfringens E str.
JGS1987]
gi|170712523|gb|EDT24705.1| ABC transporter, permease protein [Clostridium perfringens B str.
ATCC 3626]
gi|170714913|gb|EDT27095.1| ABC transporter, permease protein [Clostridium perfringens CPE str.
F4969]
gi|177908650|gb|EDT71166.1| ABC transporter, permease protein [Clostridium perfringens D str.
JGS1721]
gi|182380276|gb|EDT77755.1| ABC transporter, permease protein [Clostridium perfringens NCTC
8239]
Length = 317
Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L +S I + AG + + R SG ++ G + D +P
Sbjct: 90 SINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNIRIMQGFIPKD-------VP 137
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
+LS IPI+G LF + + T + I
Sbjct: 138 VLSSIPIIGDLFFSKTYAT--TWLVILI 163
>gi|160881391|ref|YP_001560359.1| inner-membrane translocator [Clostridium phytofermentans ISDg]
gi|160430057|gb|ABX43620.1| inner-membrane translocator [Clostridium phytofermentans ISDg]
Length = 321
Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+ +++ + +P+L IPI+G +F +
Sbjct: 124 ITTNVKYYIQKVPVLGDIPIIGKMFFQKTY 153
>gi|269964302|ref|ZP_06178560.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269830962|gb|EEZ85163.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 204
Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 9/104 (8%), Positives = 35/104 (33%), Gaps = 1/104 (0%)
Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
+ +++ + G + + + T ++++ L+I + QV
Sbjct: 96 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 154
Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
++ I + + ++G + T + + + + +
Sbjct: 155 QIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIG 198
>gi|6979184|gb|AAF34348.1| OmpA [Rickettsia sp. DnS14]
gi|87245018|gb|ABD34816.1| OmpA [Rickettsia raoultii]
Length = 1060
Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 40/295 (13%), Positives = 91/295 (30%), Gaps = 23/295 (7%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
+++ G+ L + + + + TV L+ +
Sbjct: 311 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 367
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212
+ T +N +S + +L + + VT+ V I E++ +
Sbjct: 368 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGINT 426
Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
+ G + G + + + G + SF + ++A
Sbjct: 427 LTLSANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFASSVNAK 486
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
AT T + +G + K V++++ + T ++G L F +
Sbjct: 487 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 546
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373
G L + + + DM + K+ + + SG T+ L+G+
Sbjct: 547 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAVKSGGNILIKSGNTLDLSGV 600
>gi|332284675|ref|YP_004416586.1| putative outer membrane lipoprotein [Pusillimonas sp. T7-7]
gi|330428628|gb|AEC19962.1| putative outer membrane lipoprotein [Pusillimonas sp. T7-7]
Length = 529
Score = 39.3 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 32/233 (13%), Positives = 73/233 (31%), Gaps = 29/233 (12%)
Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
+ G ++ SS+ + + G +K + S + ++ AL
Sbjct: 299 DNAEAGLDWNLVFSSAKVAAAMTMAGAGMAEPGAISLGLKQGSFQGS-DAIVKALSEVGQ 357
Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------------GATSVTTHDYGVVL 316
+ + + ++ + + Y +T + S G +L
Sbjct: 358 VVRRSSLPVLTLNRRPVTHAVRTTFSYIDKVQTTALASAVGMALPSVSVSQREETVGSLL 417
Query: 317 HFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGG 366
P G+I L V++P+ V GD + V L G
Sbjct: 418 TLVPDAQEDGQILLSVAYDNTVAQPLKSVTFGDKENPLQLQQITIDGNGTVQQVALQPGQ 477
Query: 367 TIVLAGLLKDDIQQLKEGI-PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
++++G + + + P +P++ L + R +R+ + T +
Sbjct: 478 PLLISGFDRTQEETEGRRLNPG---MPLV--LGGSDRASRQSLMTVMVVTAQV 525
>gi|166368218|ref|YP_001660491.1| hypothetical protein MAE_54770 [Microcystis aeruginosa NIES-843]
gi|166090591|dbj|BAG05299.1| unknown protein [Microcystis aeruginosa NIES-843]
Length = 710
Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 30/245 (12%)
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
++ E ++ I + + S G K S +
Sbjct: 358 VEELFIEPTLARIQSIVRDYKKVSYAEVGKTSVQGLNGIKSTVTSTTVSAFDETGPLRLD 417
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
+ A+ I ++ + A +G A+ L + S ++ GV +
Sbjct: 418 ---ELFKTASEINNFSKELIPAPAG--ANTVPSAPVLSLIAALSKDTSAWRAITSGVSME 472
Query: 318 FTPTVLSPG-----RIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGG 366
TP+VL I + + + T V + +
Sbjct: 473 ITPSVLRNSASAELDINFTTGPTKDKEPVPDQFTGTTRLRPLSRIKQNTVSTRVYVNTLD 532
Query: 367 TIVLAGLLKDDIQQL-KEGIPLLSKI--------PILGALF--RNSRFNREETEIFI--- 412
L+ + + IP++ I PI+G LF +NS + + I +
Sbjct: 533 IFALSTFNSQTTEDGGRTYIPVIGTIWQGVFSGVPIIGQLFSWKNSPQSVQHQSIVLTNS 592
Query: 413 AATPF 417
P
Sbjct: 593 FIVPT 597
>gi|257457694|ref|ZP_05622861.1| ABC transporter, permease protein [Treponema vincentii ATCC 35580]
gi|257445080|gb|EEV20156.1| ABC transporter, permease protein [Treponema vincentii ATCC 35580]
Length = 310
Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L+ +S I + A + Y R + + +A +++ D IP
Sbjct: 89 SITLKADQVISGTAINMLAAALTIYMARTITGSGNVR------VASIIRQD-------IP 135
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
LSKIP+LG LF + + + I
Sbjct: 136 GLSKIPVLGPLFFSQVYWSTWLVLVILI 163
>gi|160940454|ref|ZP_02087799.1| hypothetical protein CLOBOL_05344 [Clostridium bolteae ATCC
BAA-613]
gi|158437034|gb|EDP14801.1| hypothetical protein CLOBOL_05344 [Clostridium bolteae ATCC
BAA-613]
Length = 313
Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L VS I + + S+ + + SG + + K IP
Sbjct: 88 SIRLAQDQSVSGIAINIFMAGVTSFLYK------LMSSGQS------YQQIEPFAKLKIP 135
Query: 387 LLSKIPILGA-LFRNSRFNREETEIFIAAT 415
L IP++G LF + I T
Sbjct: 136 FLGDIPLIGNALFNQDVLTYGVYVLVILVT 165
>gi|325485050|gb|ADZ16422.1| outer membrane protein A [Rickettsia raoultii]
gi|325485052|gb|ADZ16423.1| outer membrane protein A [Rickettsia raoultii]
gi|325485056|gb|ADZ16425.1| outer membrane protein A [Rickettsia raoultii]
gi|325485060|gb|ADZ16427.1| outer membrane protein A [Rickettsia raoultii]
gi|325485062|gb|ADZ16428.1| outer membrane protein A [Rickettsia raoultii]
gi|325485064|gb|ADZ16429.1| outer membrane protein A [Rickettsia raoultii]
gi|325485066|gb|ADZ16430.1| outer membrane protein A [Rickettsia raoultii]
gi|325485068|gb|ADZ16431.1| outer membrane protein A [Rickettsia raoultii]
gi|325485070|gb|ADZ16432.1| outer membrane protein A [Rickettsia raoultii]
gi|325485072|gb|ADZ16433.1| outer membrane protein A [Rickettsia raoultii]
gi|325485074|gb|ADZ16434.1| outer membrane protein A [Rickettsia raoultii]
gi|325485076|gb|ADZ16435.1| outer membrane protein A [Rickettsia raoultii]
gi|325485078|gb|ADZ16436.1| outer membrane protein A [Rickettsia raoultii]
gi|325485080|gb|ADZ16437.1| outer membrane protein A [Rickettsia raoultii]
gi|325485082|gb|ADZ16438.1| outer membrane protein A [Rickettsia raoultii]
gi|325485084|gb|ADZ16439.1| outer membrane protein A [Rickettsia raoultii]
gi|325485086|gb|ADZ16440.1| outer membrane protein A [Rickettsia raoultii]
gi|325485088|gb|ADZ16441.1| outer membrane protein A [Rickettsia raoultii]
gi|325485090|gb|ADZ16442.1| outer membrane protein A [Rickettsia raoultii]
gi|325485092|gb|ADZ16443.1| outer membrane protein A [Rickettsia raoultii]
gi|325485094|gb|ADZ16444.1| outer membrane protein A [Rickettsia raoultii]
gi|325485096|gb|ADZ16445.1| outer membrane protein A [Rickettsia raoultii]
gi|325485098|gb|ADZ16446.1| outer membrane protein A [Rickettsia raoultii]
Length = 1052
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
+++ G+ L + + + + TV L+ +
Sbjct: 302 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 358
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212
+ T +N +S + +L + + VT+ V I E++
Sbjct: 359 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGTNT 417
Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
+ G + G + + + G + SF + ++A
Sbjct: 418 LTLPANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFVSSVNAK 477
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
AT T + +G + K V++++ + T ++G L F +
Sbjct: 478 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 537
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373
G L + + + DM + K+ + + SG T+ L+G+
Sbjct: 538 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 591
>gi|315501954|ref|YP_004080841.1| hypothetical protein ML5_1150 [Micromonospora sp. L5]
gi|315408573|gb|ADU06690.1| protein of unknown function DUF58 [Micromonospora sp. L5]
Length = 453
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 18/168 (10%), Positives = 47/168 (27%), Gaps = 14/168 (8%)
Query: 4 LQRTFFTMMSIFLFSSNPS--VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
L R + + L ++ + + ++ +G+ +++
Sbjct: 16 LGRAVL-LTGVLLVAAVLLGRIDLVVLATPFALGTAYALRRRPAALPELELGVGDTHLVE 74
Query: 62 VPVDVQDVLVSDP-----TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
V V++P A V R + + G + + G + +
Sbjct: 75 GAPLAATVAVANPDLVGYDLAVVRTRMSRWLRVEQVGFGGTGLDVSRSGGADRPFVTSVP 134
Query: 117 ERDIAHLE------MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
L+ R I + +RV +V ++ ++
Sbjct: 135 RGSAVDLKLTGTALRWGRHPIGPAGVRVAAADGLLVSRAVITDPIRAR 182
>gi|322514181|ref|ZP_08067246.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
gi|322119967|gb|EFX91969.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
Length = 68
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
+K+T+AEV + +IG + + + A GG S G +++ +
Sbjct: 1 MKLTVAEVNKTFSDKIGINWNNLSGNFFRNLGSATISGGFGKSGGQ----LALVNSNNLN 56
Query: 258 TVLHAL 263
+L AL
Sbjct: 57 VLLSAL 62
>gi|6979190|gb|AAF34351.1| OmpA [Rickettsia sp. RpA4]
gi|87245013|gb|ABD34814.1| OmpA [Rickettsia raoultii]
Length = 1060
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
+++ G+ L + + + + TV L+ +
Sbjct: 311 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 367
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212
+ T +N +S + +L + + VT+ V I E++
Sbjct: 368 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGTNT 426
Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
+ G + G + + + G + SF + ++A
Sbjct: 427 LTLPANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFVSSVNAK 486
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
AT T + +G + K V++++ + T ++G L F +
Sbjct: 487 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 546
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373
G L + + + DM + K+ + + SG T+ L+G+
Sbjct: 547 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 600
>gi|187478853|ref|YP_786877.1| type IV pilus assembly protein [Bordetella avium 197N]
gi|115423439|emb|CAJ49973.1| type IV pilus assembly protein [Bordetella avium 197N]
Length = 520
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 21/187 (11%)
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
+ + A G + ++ L + AI L ++ + +
Sbjct: 309 NSARVAAQGMLPTGLSAAIPGADKTGWDGSQALIKMLAQYGAISHQRSIPLLTLNRRPVT 368
Query: 287 FTSGGQHLYKTVSSS---------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTE 335
+ Y S A + G L P G I L +
Sbjct: 369 YAVHNTFSYVDQVESLRAADDKASGVAINQKRVTVGTFLTLLPDAQDDGSILLSIGYDST 428
Query: 336 VSEPVIGVN-AGDMPSYRVRKAD-------TTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
V++P+ + + +V++ + V + G +VL+G + ++
Sbjct: 429 VAQPLKALAFGSNSQPLQVQQLNLDGNGSVQQVRVRPGQPVVLSGFDRSIDSYDRQR--F 486
Query: 388 LSKIPIL 394
P+L
Sbjct: 487 TPDAPLL 493
>gi|325485054|gb|ADZ16424.1| outer membrane protein A [Rickettsia raoultii]
Length = 1037
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
+++ G+ L + + + + TV L+ +
Sbjct: 302 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 358
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212
+ T +N +S + +L + + VT+ V I E++
Sbjct: 359 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGTNT 417
Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
+ G + G + + + G + SF + ++A
Sbjct: 418 LTLPANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFVSSVNAK 477
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
AT T + +G + K V++++ + T ++G L F +
Sbjct: 478 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 537
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373
G L + + + DM + K+ + + SG T+ L+G+
Sbjct: 538 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 591
>gi|89893914|ref|YP_517401.1| hypothetical protein DSY1168 [Desulfitobacterium hafniense Y51]
gi|219668288|ref|YP_002458723.1| inner-membrane translocator [Desulfitobacterium hafniense DCB-2]
gi|89333362|dbj|BAE82957.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219538548|gb|ACL20287.1| inner-membrane translocator [Desulfitobacterium hafniense DCB-2]
Length = 321
Score = 39.0 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
+ ++ +P L +P++G LF + +
Sbjct: 124 ITTNVNFYLRKVPFLGDLPVIGKLFFQNTY 153
>gi|182419285|ref|ZP_02950538.1| ABC transporter, permease protein [Clostridium butyricum 5521]
gi|237668765|ref|ZP_04528749.1| sugar ABC transporter, permease protein [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182376925|gb|EDT74496.1| ABC transporter, permease protein [Clostridium butyricum 5521]
gi|237657113|gb|EEP54669.1| sugar ABC transporter, permease protein [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 317
Score = 39.0 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L +S I + A + + R SG + +G D +P
Sbjct: 90 SINLNADQTISGTAINMIASALTIFLARTI-----AGSGRIRIQSGFYPKD-------VP 137
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
LS+IPI+G LF + + I
Sbjct: 138 FLSQIPIIGDLFFKKTYITTWLVLLILV 165
>gi|29348436|ref|NP_811939.1| hypothetical protein BT_3027 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29340340|gb|AAO78133.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 395
Score = 39.0 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 28/281 (9%), Positives = 82/281 (29%), Gaps = 26/281 (9%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M ++R + L ++ + V N ++ I + + I+
Sbjct: 1 MNIMKRNLLYLAGFLLAAATVFSGCNDDDPSYHDLVPNTQELIINLDET---PEGIIQIV 57
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
Q + + S+ A + + + G ++ + I+ +
Sbjct: 58 QGNGN-YKITSSNEDVATA-IAEGNKIKVTALKAGSTDLSITDWAKMSTNVKVIVDQLSE 115
Query: 121 AHLEMTLRRFIADSN--IRVEMVSDTV--------VLHGMVRTIQDSQRAVELSETFLSQ 170
L + N + V + V+ V + + L+ +
Sbjct: 116 LVLSNSATTMYPGENKTVNVYTGNRGYKVTVDKESVVKATV-DEEGHIQIESLAPGNATV 174
Query: 171 SGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
+ ++ S+ KV+ L + +++ + + + + +
Sbjct: 175 TVTDRLNKSAEFSVKVIKKLVVDNSEEI--------AYLTVGEPLTIKILDGNGGYTCTN 226
Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
+ +A + ++E G + L R+ F + ++
Sbjct: 227 NGSATYLKCTIAENGTDVIIEGLKRYRFNKTVTIKDQEGEA 267
>gi|302865409|ref|YP_003834046.1| hypothetical protein Micau_0906 [Micromonospora aurantiaca ATCC
27029]
gi|302568268|gb|ADL44470.1| protein of unknown function DUF58 [Micromonospora aurantiaca ATCC
27029]
Length = 453
Score = 39.0 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 19/168 (11%), Positives = 47/168 (27%), Gaps = 14/168 (8%)
Query: 4 LQRTFFTMMSIFLFSSNPS--VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
L R + + L ++ + + ++ +G+ +++
Sbjct: 16 LGRAVL-LTGVLLVAAVLLGRIDLVVLATPFALGTAYALRRRPAALPELELGVGDTHLVE 74
Query: 62 VPVDVQDVLVSDP-----TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
V V++P A V R + + G + + G + +
Sbjct: 75 GAPLAATVAVANPDLVGYDLAVVRTRMSRWLRVEQVGFGGTGLDVSRSGGADRPFVTSVP 134
Query: 117 ERDIAHLE------MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
LE R I + +RV +V ++ ++
Sbjct: 135 RGSAVDLELTGTALRWGRHPIGPAGVRVAAADGLLVSRAVITDPIRAR 182
>gi|327541608|gb|EGF28138.1| heme/hemopexin utilization protein huxA [Rhodopirellula baltica WH47]
Length = 4236
Score = 39.0 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 50/179 (27%), Gaps = 14/179 (7%)
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
S + +G + A+ F+ G S +D ++ +
Sbjct: 3765 DWSDPNNWAGGAIPDLANVANVFLPAGVTPSFDHTVDGPVEIEFIN-----GDNLIVQSG 3819
Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV-----VLHFTPTVLS--PGRI 328
TL+ + AS Q + V G L G I
Sbjct: 3820 TLSIENN--ASLDLLNQTGGTLQFNGDLGVDVLNQQGGTLDLEGTLSVLQEFTQALGGVI 3877
Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
E+++ ++ ++ V T ++ G I L GL D + +P
Sbjct: 3878 EAIGNIEITQSSGTLDVQNLSGTHVELNATNGDVQVGDIIALGGLSIDANSGNIDQLPG 3936
>gi|326387091|ref|ZP_08208701.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM
19370]
gi|326208272|gb|EGD59079.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM
19370]
Length = 1172
Score = 39.0 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 372 GLLKDDIQQLKEGIPL-LSKIPILGALFRNSRFNREETEIF------IAATPF---LVKP 421
GL + +L +P L +IPILG F + ++ E+ + PF ++
Sbjct: 990 GLSGAETIRLIRRLPGRLGRIPILG--FTAYSNSDKQRELVEAGGGDVIVKPFTRATIRD 1047
Query: 422 VAMRDLSRP---DDHYSVEDDAKAFF 444
R ++ P D + ++ + F
Sbjct: 1048 AIARAIATPSCGGDKAAGSEEFERFL 1073
>gi|238027221|ref|YP_002911452.1| putative outer membrane phospholipase A [Burkholderia glumae
BGR1]
gi|237876415|gb|ACR28748.1| Putative outer membrane phospholipase A [Burkholderia glumae
BGR1]
Length = 429
Score = 39.0 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDV-EIGKGKKISIGL----- 54
MR+ R F + L + P+ + A+A V + E +++ L
Sbjct: 1 MRHRSRRRFALPRRALAALIPAASLAGAAIPAHATVSLVQPAREAAASAPLTLTLIYADD 60
Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
++ + D +V V+ +A V V R
Sbjct: 61 DRAPLAVTTPDSLEVTVTGAEQAPVTVRLARE 92
>gi|195172636|ref|XP_002027102.1| GL20049 [Drosophila persimilis]
gi|194112915|gb|EDW34958.1| GL20049 [Drosophila persimilis]
Length = 1879
Score = 39.0 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 14/145 (9%)
Query: 71 VSDPTKADVVV-----HSPRTMY--LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
V +P +V + P + + GKN+G+ ++ G Q ++ + ++ + A +
Sbjct: 1016 VFNPNILNVRLDMQHNLRPGQIRYSITGKNIGETKIVFQSGKGSQQVSSEPIVVQVFAPI 1075
Query: 124 EMTLRR--FIADSNIRVEMVSD---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
+ R + S+I++ L V Q + + + +
Sbjct: 1076 RLYPRDSTLLVGSSIQIYCQGGPQPNTNLIYTVEKEQVATMSSAIVTAHRLGASNITGKC 1135
Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIA 203
V + Q T++V +A
Sbjct: 1136 LMKNPVTGKDEV--VSQDTIEVRVA 1158
>gi|325485058|gb|ADZ16426.1| outer membrane protein A [Rickettsia raoultii]
Length = 1010
Score = 39.0 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
+++ G+ L + + + + TV L+ +
Sbjct: 302 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 358
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212
+ T +N +S + +L + + VT+ V I E++
Sbjct: 359 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGTNT 417
Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
+ G + G + + + G + SF + ++A
Sbjct: 418 LTLPANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFVSSVNAK 477
Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
AT T + +G + K V++++ + T ++G L F +
Sbjct: 478 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 537
Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373
G L + + + DM + K+ + + SG T+ L+G+
Sbjct: 538 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 591
>gi|331085627|ref|ZP_08334711.1| hypothetical protein HMPREF0987_01014 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407514|gb|EGG87016.1| hypothetical protein HMPREF0987_01014 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 317
Score = 39.0 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 12/72 (16%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I ++ +S + + A + R ++ T + + +P
Sbjct: 88 SINMKADQTISGTALNLFAPAFAIFTARMIQGVQQIQFTDTFHI------------DKVP 135
Query: 387 LLSKIPILGALF 398
+L IP++G +F
Sbjct: 136 VLGDIPVIGDMF 147
>gi|325660645|ref|ZP_08149276.1| hypothetical protein HMPREF0490_00007 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325473054|gb|EGC76261.1| hypothetical protein HMPREF0490_00007 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 317
Score = 39.0 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 12/72 (16%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I ++ +S + + A + R ++ T + + +P
Sbjct: 88 SINMKADQTISGTALNLFAPAFAIFTARMIQGVQQIQFTDTFHI------------DKVP 135
Query: 387 LLSKIPILGALF 398
+L IP++G +F
Sbjct: 136 VLGDIPVIGDMF 147
>gi|301386028|ref|ZP_07234446.1| tail fiber protein H, putative [Pseudomonas syringae pv. tomato
Max13]
gi|302060587|ref|ZP_07252128.1| tail fiber protein H, putative [Pseudomonas syringae pv. tomato
K40]
gi|302129790|ref|ZP_07255780.1| tail fiber protein H, putative [Pseudomonas syringae pv. tomato
NCPPB 1108]
Length = 780
Score = 39.0 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 44/346 (12%), Positives = 94/346 (27%), Gaps = 33/346 (9%)
Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
NP VA + I+ AV+ ++ + + + L + + V + V D
Sbjct: 190 LNPGVAYVEGIRLQLDAVLPVTVPAVPTKAWLDVVLQR-ELSDVVASFKVVFGQDAKIDY 248
Query: 79 VVVHSPRTMYL-FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
S R + G +++ D + + +DI + + A
Sbjct: 249 TDSASARHYLVPLADITGTSSLT----DLRPIEAIDIELVKHFAA--------------- 289
Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
V D L T +D L N ++ +++N + + QV
Sbjct: 290 --RVGDYPDLRARATTKEDVD-LGNLPNAISDDPNSNSGVVLATTRMVNAVR-SAISQVM 345
Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
I + + + + +G + G + + GV
Sbjct: 346 --ALIVDGSTPVGRAVRLVTPRAIRFNGAASGIGTYDGASDTNITLTLADSGVAAGTYTR 403
Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV-- 315
++ + + PT A G + +++ + + G
Sbjct: 404 VAVNL---KGLVTSGGNPTTLAGYGITDAYSKDDANSSFVKQGGGPGMLSNRINIGWTGD 460
Query: 316 -LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
L + GRI ++ + T V
Sbjct: 461 RLKVSVDGTDGGRIWTDTSFNPNDKANKATSLAGYGITDAHTITQV 506
>gi|294643589|ref|ZP_06721393.1| putative lipoprotein [Bacteroides ovatus SD CC 2a]
gi|294808688|ref|ZP_06767422.1| putative lipoprotein [Bacteroides xylanisolvens SD CC 1b]
gi|292641084|gb|EFF59298.1| putative lipoprotein [Bacteroides ovatus SD CC 2a]
gi|294444127|gb|EFG12860.1| putative lipoprotein [Bacteroides xylanisolvens SD CC 1b]
Length = 523
Score = 38.6 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 30/267 (11%), Positives = 77/267 (28%), Gaps = 30/267 (11%)
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFI 131
+ + L GK G V + +++ L + ++ +A+L +
Sbjct: 234 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 293
Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
I E + L+G + + + FL + ++ +
Sbjct: 294 PFEYNGTADESLKILSTITFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 353
Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226
+ ++ + L +I E ++ + + + ++ + G
Sbjct: 354 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 411
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
S K ++ DF + + + + L++ ++ SG+ S
Sbjct: 412 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 469
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313
G ++ G T G
Sbjct: 470 EDKDGMVANWLFNNGNGNTKTFVSLAG 496
>gi|196231382|ref|ZP_03130241.1| hypothetical protein CfE428DRAFT_3406 [Chthoniobacter flavus
Ellin428]
gi|196224718|gb|EDY19229.1| hypothetical protein CfE428DRAFT_3406 [Chthoniobacter flavus
Ellin428]
Length = 267
Score = 38.6 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 25/189 (13%), Positives = 52/189 (27%), Gaps = 17/189 (8%)
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
V +++ + V I + + G + +
Sbjct: 59 VRIEMQVVAVPERIGIALMPDLKSKEKIEAANTRIQQMLAKGTAKLIGWPIMTTHTGQR- 117
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
V+ A++ PTL A + + T+ T + GV
Sbjct: 118 --AVIEAIKEIRWATEYHPPTLNVSE-VPADPPAKVTPSVDVSTLEAFPTAFETRNAGVT 174
Query: 316 LHFTPTVLSPGR----------IGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVEL 362
L P + G+ + L +V+ G + P + K T+ L
Sbjct: 175 LEVEPVIAPDGKTIDLNIVPQHVRLTGFKKVTIEGAAHKGKTIVEQPEFNTNKVTTSRRL 234
Query: 363 PSGGTIVLA 371
+G +++
Sbjct: 235 KNGERVLMG 243
>gi|295088172|emb|CBK69695.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
Length = 523
Score = 38.6 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 29/267 (10%), Positives = 76/267 (28%), Gaps = 30/267 (11%)
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131
+ + L GK G V + +++ + ++ +A+L +
Sbjct: 234 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 293
Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
I E + L+G + + + FL + ++ +
Sbjct: 294 PFEYNGTADESLKILSTITFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 353
Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226
+ ++ + L +I E ++ + + + ++ + G
Sbjct: 354 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 411
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
S K ++ DF + + + + L++ ++ SG+ S
Sbjct: 412 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 469
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313
G ++ G T G
Sbjct: 470 EDKDGMVANWLFNNGNGNTKTFVSLAG 496
>gi|298385858|ref|ZP_06995415.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|298261086|gb|EFI03953.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
Length = 395
Score = 38.2 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 28/281 (9%), Positives = 83/281 (29%), Gaps = 26/281 (9%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
M ++R + L ++ + V N ++ I + + I+
Sbjct: 1 MNIMKRNLLYLAGFLLAAATVFSGCNDDDPSYHDLVPNTQELIINLDET---PEGIIQIV 57
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
Q + + + S+ A + + + G ++ + I+ +
Sbjct: 58 QGNGNYK-ITSSNEDVATA-IAEGNKIKVTALKAGSTDLSITDWAKMSTNVKVIVDQLSE 115
Query: 121 AHLEMTLRRFIADSN--IRVEMVSDTV--------VLHGMVRTIQDSQRAVELSETFLSQ 170
L + N + V + V+ V + + L+ +
Sbjct: 116 LVLSNSATTMYPGENKTVNVYTGNRGYKVTVDKESVVKATV-DEEGHIQIESLAPGNATV 174
Query: 171 SGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
+ ++ S+ KV+ L + +++ + + + + +
Sbjct: 175 TVTDRLNKSAEFSVKVIKKLVVDNSEEI--------AYLTVGEPLTIKILDGNGGYTCTN 226
Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
+ +A + ++E G + L R+ F + ++
Sbjct: 227 NGSATYLKCTIAENGTDVIIEGLKRYRFNKTVTIKDQEGES 267
>gi|237715223|ref|ZP_04545704.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262405067|ref|ZP_06081617.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|229444532|gb|EEO50323.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262355942|gb|EEZ05032.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
Length = 516
Score = 38.2 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 39/129 (30%), Gaps = 14/129 (10%)
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131
+ + L GK G V + +++ + ++ +A+L +
Sbjct: 227 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 286
Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
I E + L+G + + + FL + ++ +
Sbjct: 287 PFEYNGTADESLKILSTITFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 346
Query: 179 SSSKKVMNL 187
+ ++ + L
Sbjct: 347 NDEERFLQL 355
>gi|330836048|ref|YP_004410689.1| nucleoside ABC transporter membrane protein [Spirochaeta coccoides
DSM 17374]
gi|329747951|gb|AEC01307.1| nucleoside ABC transporter membrane protein [Spirochaeta coccoides
DSM 17374]
Length = 310
Score = 38.2 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I LR +S I + A + Y R V SG ++ G+++ D +P
Sbjct: 88 SINLRADQTISGTAINMLAAALTVYLAR-----VFSGSGNIRIMMGIVRSD-------VP 135
Query: 387 LLSKIPILGALFRNSRF 403
+LSKIP+LG LF + +
Sbjct: 136 VLSKIPVLGPLFFSQTY 152
>gi|262199490|ref|YP_003270699.1| von Willebrand factor type A [Haliangium ochraceum DSM 14365]
gi|262082837|gb|ACY18806.1| von Willebrand factor type A [Haliangium ochraceum DSM 14365]
Length = 808
Score = 38.2 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 51/130 (39%), Gaps = 11/130 (8%)
Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKIS-IGLN----KVIILQVPVDVQDVLVSDPTK 76
+ A P A++ + +D I + +G+ + +++ + +V +DP+
Sbjct: 30 APALEPDPAAADSPIALATDHLITVSGNVETLGVGYHTEEGLLVNTNDALFEVEAADPSI 89
Query: 77 ADVVV-----HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH-LEMTLRRF 130
+ SP + + G + G + + D + +++ +L + ++ LE T
Sbjct: 90 VEAETERTHESSPPALIVRGLSPGTTELTVRLFDATRTMHVTVLPQTILSGKLETTTVEL 149
Query: 131 IADSNIRVEM 140
+D +
Sbjct: 150 DSDETAEIGT 159
>gi|293604519|ref|ZP_06686924.1| lipoprotein [Achromobacter piechaudii ATCC 43553]
gi|292817100|gb|EFF76176.1| lipoprotein [Achromobacter piechaudii ATCC 43553]
Length = 542
Score = 38.2 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 38/260 (14%), Positives = 84/260 (32%), Gaps = 36/260 (13%)
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
N V ++T+ V++ G + +++G S +AA + +
Sbjct: 288 NKAMTRRVRLVFEEITVI-VKQSAAG--GLDWNALYAAAGSSARYAAPAAAALGASTLEA 344
Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
++ G + V+ AL AI + + ++ + + Y ST
Sbjct: 345 TL-GRGALQGSQAVISALSTMGAIVRHNKVPVLTLNRRPVTHAIRTTFSYIDRVQSTAVP 403
Query: 306 SVT----------------THDYGVVLHFTPTVLSPGRIGLRIQTE--VSEPVIGVNAG- 346
+T G L P + G+I L + + V++P+ + G
Sbjct: 404 GMTAAGANGSLPAVSITQKEETVGSFLTLVPDIQPDGQILLSVAYDNAVAQPLKTIMFGE 463
Query: 347 -------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI-PLLSKIPILGALF 398
+ +EL G ++L+G + Q + + P +P++ +
Sbjct: 464 RGNQVQVQQITIDGNGTVQQIELRPGQPVILSGFDRSTDQHSGQRLAPG---MPLI--MG 518
Query: 399 RNSRFNREETEIFIAATPFL 418
+E + T +
Sbjct: 519 GQDSAEQERETTLMLVTAQV 538
>gi|32472568|ref|NP_865562.1| heme/hemopexin utilization protein huxA [Rhodopirellula baltica SH 1]
gi|32443804|emb|CAD73246.1| conserved hypothetical protein-possibly heme/hemopexin utilization
protein huxA [Rhodopirellula baltica SH 1]
Length = 4254
Score = 38.2 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 6/175 (3%)
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH---ALERATAIRTL 272
S + +G + A+ F+ G S +D ++ + ++ +R
Sbjct: 3785 DWSDPNNWAGGAIPDLANVANVFLPAGVTPSFNNTVDGPVEIESINGDNLIVQSGTLRIE 3844
Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
+ +L + Q+ L V + T V+ FT G I
Sbjct: 3845 NDASLD-LLNQTGGTLQFDGGLGVAVLNQQSGTLDLAGTLSVLQEFT--QALGGVIEAIG 3901
Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
E+++ ++ ++ V T ++ G I L GL D + +P
Sbjct: 3902 NIEITQSSGTLDVRNLSGTHVELNATNGDVQVGDIIALGGLNIDANSGNIDQLPG 3956
>gi|332297783|ref|YP_004439705.1| protein of unknown function DUF342 [Treponema brennaborense DSM
12168]
gi|332180886|gb|AEE16574.1| protein of unknown function DUF342 [Treponema brennaborense DSM
12168]
Length = 657
Score = 38.2 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 48/345 (13%), Positives = 97/345 (28%), Gaps = 26/345 (7%)
Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
P K+ P + I +E G+ I++ L K +I+ ++
Sbjct: 297 PLAQKMLPERGKAGKTIFGRYLEAKNGRDINLPLGKNVIVDTDGR------------TIL 344
Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
+ L G + + L + +I L + + D V+
Sbjct: 345 AAMNGQVLLIGDKI--------NVEPIMELENVSIKTGNITFLGTVIVKGNVDDGFNVKA 396
Query: 141 VSDTVVLHGMV--RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
+ + ++G V +++ + G + S K + ++ E+ V +
Sbjct: 397 SGN-IEIYGTVGKSSLEAGGDIIVSLGIMGRDEGTIRAGKSLWAKFIQNTTVSVEEYVIV 455
Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
I K+I Q + G + K + G S + F E
Sbjct: 456 ADGIINSNVTARKRIMLQ-GKRAAIIGGHLFATEEISAKSIGSNGGGSETILEVGFDPEA 514
Query: 259 VLHALERATAIRTLAEPTLTAISGQSA--SFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
+ LE +LA+ + + + L S G S +
Sbjct: 515 KMRLLELTEKRNSLAKESEEVNLNIQTLENMKKVRRSLPPEKEESLGKFSSRRAEIAAET 574
Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
T + + LR + + + VR V
Sbjct: 575 EKLDTEIQDIQNHLRELKVIGKVSVSGTVYAGVKIFVRDVKDDVR 619
>gi|159039589|ref|YP_001538842.1| transport-associated [Salinispora arenicola CNS-205]
gi|157918424|gb|ABV99851.1| transport-associated [Salinispora arenicola CNS-205]
Length = 213
Score = 38.2 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 28/151 (18%)
Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD--VLVSDPTK----------- 76
A+ + E ++I I +++ + V + V V++
Sbjct: 58 AVADELEVRPPGDERYTDREIGIAVSRALEWDSFVPAERLDVTVANGWVILRGDVEFGWQ 117
Query: 77 ---ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
A+ V R + G N++ G ER ++ L R +
Sbjct: 118 RRTAEAEVRRLRGVR------GVTNLVAARPAGAA------DGERIRREVQRALSRGLGT 165
Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
+ V++ TVVL+G+VR+ + +A +
Sbjct: 166 ERVTVDVDGSTVVLNGVVRSWWERDQAERTA 196
>gi|220928834|ref|YP_002505743.1| inner-membrane translocator [Clostridium cellulolyticum H10]
gi|219999162|gb|ACL75763.1| inner-membrane translocator [Clostridium cellulolyticum H10]
Length = 313
Score = 38.2 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 15/78 (19%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE--G 384
I LR VS + + S+ G + + L D ++
Sbjct: 84 TITLRANQIVSGLSLTIFGAGFSSFL------------GQKL-IGQALSDSVRNSFTPVK 130
Query: 385 IPLLSKIPILGALFRNSR 402
IPLL IPILG+ F +
Sbjct: 131 IPLLGDIPILGSAFFHQN 148
>gi|164687316|ref|ZP_02211344.1| hypothetical protein CLOBAR_00957 [Clostridium bartlettii DSM
16795]
gi|164603740|gb|EDQ97205.1| hypothetical protein CLOBAR_00957 [Clostridium bartlettii DSM
16795]
Length = 323
Score = 38.2 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 87/256 (33%), Gaps = 25/256 (9%)
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
++ + + V+V D AD++ KN+G V+ + +GK L +
Sbjct: 56 ELKKNPKRVVVFDYGVADIL-----------KNLGVDAVVGLPKNGKMPEILSNYSDDKY 104
Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHG--MVRTIQDSQRAVELSETFLSQSGRNQYAN 178
++ VE ++ +++ G I + +
Sbjct: 105 TNVGSLKETDFEA----VESLNPDLIIIGGRQAEDIDSFKEIAPTVNLAVDGQDYMNSFK 160
Query: 179 SSSKKVMNLLNIAGEDQV---TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
+ + NL + E + ++ IA+V + + ++ G S+ ++ G F+A
Sbjct: 161 TVVTDLGNLFDKQDEAKKAIDEIEAKIAKVNKTVTEK-GLTASVVMANEGSISVFSAKSR 219
Query: 236 GKFVSEGGDFS-VKGVLDRFSFETVLH---ALERATAIRTLAEPTLTAISGQSASFTSGG 291
+ G F+ +D + + LE + + + G++AS
Sbjct: 220 YGLIYNGLGFTEADKNIDDSTHGQQVSFEYFLENKSDYVFVVDRGAVTGKGEAASKLFDN 279
Query: 292 QHLYKTVSSSTGATSV 307
+ + KT S G
Sbjct: 280 EVMNKTEVSKNGNIVY 295
>gi|160885633|ref|ZP_02066636.1| hypothetical protein BACOVA_03636 [Bacteroides ovatus ATCC 8483]
gi|156109255|gb|EDO11000.1| hypothetical protein BACOVA_03636 [Bacteroides ovatus ATCC 8483]
Length = 514
Score = 37.8 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 39/129 (30%), Gaps = 14/129 (10%)
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131
D + L GK G V + +++ + ++ +A+L +
Sbjct: 225 DEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 284
Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
I E + L+G + + + FL + ++ +
Sbjct: 285 PFEYNGTADESLKNLSTITFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 344
Query: 179 SSSKKVMNL 187
+ ++ + L
Sbjct: 345 NDEERFLQL 353
>gi|328887424|emb|CCA60663.1| hypothetical protein SVEN_7377 [Streptomyces venezuelae ATCC 10712]
Length = 3543
Score = 37.8 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 58/378 (15%), Positives = 101/378 (26%), Gaps = 51/378 (13%)
Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
RT + + + P P A A + +G+ + L +
Sbjct: 2326 RTEVDRLGRAVAVTLPDY-TPPGAATAITATSRTAYDGLGRTVSRTDPLGRTTSYAYDQL 2384
Query: 66 VQDVLVSDPTKADVV----VHSPRTMYLFGKNV----GQANVILIGHDGKQMLNLDILIE 117
V V+DP D V + SP Y G + G + G Q+ + D
Sbjct: 2385 GNLVSVTDPAVDDTVGTAALQSPGAGYFDGGSQALGGGAVSTFTWTPTGLQLSSTDQTGS 2444
Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
R A + R+ TI+ +A L+ F NQ
Sbjct: 2445 RSEATYDELGRQL-------------------TATTIERRPQAQTLTSRFTWDDAGNQTR 2485
Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAE----VRRDILKQIGFQHSIT---GSSSGPSKSF 230
+++ DQV + + V +G G + +
Sbjct: 2486 STTPSGRTTRTEYNAADQVL---KVIDPAGGVTTSAYDGLGRLIETKDPTGRRATTAYDA 2542
Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT---------LAEPTLTAIS 281
+ G ++ + + L A A RT L + L +
Sbjct: 2543 SGLPVSTTDYGTGSTPLRTATSEYDADGNLTAAVDANGARTTYGYDALGQLTKQVLPVSA 2602
Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV----VLHFTPTVLSPGRIGLRIQTEVS 337
+S + T G + G T + + V P +R T V
Sbjct: 2603 TKSITTTFGYDAAGNRTRLTDGRGKATYYTFNVWGLPESTIEPATSQHWTADVRTWTTVY 2662
Query: 338 EPVIGVNAGDMPSYRVRK 355
+ +P R+
Sbjct: 2663 DAAGRPVTELLPGNVKRQ 2680
>gi|302387358|ref|YP_003823180.1| Cna B domain protein [Clostridium saccharolyticum WM1]
gi|302197986|gb|ADL05557.1| Cna B domain protein [Clostridium saccharolyticum WM1]
Length = 1610
Score = 37.8 bits (86), Expect = 4.3, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 13/160 (8%)
Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT--AIRTLA 273
+ G G +S G ++ G+ S+ + T +
Sbjct: 1300 NFYSFTGTGGIPNGTIQSGGTVSLSGGQSVTITGLPKDTSYSVTENDYSANGYSTASTGS 1359
Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
+ Q+ASF + S T A + TT + + FT +
Sbjct: 1360 SGIVRTDEEQTASFVNTKTMPGSLTISKTVAGTSTTKKFDFKVIFT---KPDKTVD---- 1412
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
+ P G+ P+ +R DT + L G I + GL
Sbjct: 1413 ---TAPYKFTGRGEFPTDEIRSGDT-ISLADGENITITGL 1448
>gi|308813113|ref|XP_003083863.1| unnamed protein product [Ostreococcus tauri]
gi|116055745|emb|CAL57830.1| unnamed protein product [Ostreococcus tauri]
Length = 1184
Score = 37.8 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 5/78 (6%)
Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD-----VLV 71
+ S P A A + G +S V ++ + V
Sbjct: 30 VCAAKSTTASTPPTPAGDARPRVVVSGDRAGPTMSSPTAPVPRVETASTIGTCDVSNVAC 89
Query: 72 SDPTKADVVVHSPRTMYL 89
+ AD V S +Y+
Sbjct: 90 VNTDVADAEVLSAFAVYV 107
>gi|308067708|ref|YP_003869313.1| hypothetical protein PPE_00926 [Paenibacillus polymyxa E681]
gi|305856987|gb|ADM68775.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 1350
Score = 37.4 bits (85), Expect = 4.5, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 14/124 (11%)
Query: 35 AVINISDVEIGKGKKISIGLNKV-IILQVPVDVQD---------VLVSDPTKADVVVHSP 84
+ N S V + + L K + + D + SDP AD V +
Sbjct: 819 PIPNSSPVVTRAPDAVHLILGKADGTVDLSTIFADPDHDPIRYEISSSDPAVADATVQND 878
Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
+ + G G + + D + +I + + LE + I + ++ +
Sbjct: 879 -QLVIHGLTSGNTVITITAKDDR---GGEISTDLQVHLLENAVITAIPEQLLQWGDAASE 934
Query: 145 VVLH 148
+ L
Sbjct: 935 LDLS 938
>gi|254520856|ref|ZP_05132912.1| ABC transporter [Clostridium sp. 7_2_43FAA]
gi|226914605|gb|EEH99806.1| ABC transporter [Clostridium sp. 7_2_43FAA]
Length = 315
Score = 37.4 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L +S I + AG + + R SG V G + D IP
Sbjct: 88 SINLNANQVISGTAINMIAGALTVFLARNIT-----GSGNIRVTNGFIPKD-------IP 135
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
+LS+IPI+G LF + T + I
Sbjct: 136 VLSQIPIIGPLFFTKTYAT--TWLVIVI 161
>gi|326790705|ref|YP_004308526.1| ABC transporter transmembrane protein [Clostridium lentocellum DSM
5427]
gi|326541469|gb|ADZ83328.1| ABC-type transporter, integral membrane subunit [Clostridium
lentocellum DSM 5427]
Length = 317
Score = 37.4 bits (85), Expect = 4.9, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L+ +S I + A + + R SG ++ GL K + +
Sbjct: 90 SINLQADQTISGTAINMIAAGLTIFLARNIT-----GSGNIVLTVGLAKQN-------VK 137
Query: 387 LLSKIPILGALFRNSRFNREETEIFIA 413
+LS IPILG LF + ++ + I
Sbjct: 138 VLSSIPILGPLFFTNSYSTTWLVLLIL 164
>gi|222081092|ref|YP_002540455.1| hypothetical protein Arad_7335 [Agrobacterium radiobacter K84]
gi|221725771|gb|ACM28860.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 97
Score = 37.4 bits (85), Expect = 4.9, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
+ S I V T+VL G+ + Q + A+ ++ + N A +
Sbjct: 33 LEGSRIDVTATEGTIVLSGVATSDQARETAIAIAGEYAGNRVVNNIATQAD 83
>gi|156057445|ref|XP_001594646.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154702239|gb|EDO01978.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 612
Score = 37.4 bits (85), Expect = 5.1, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 42/178 (23%), Gaps = 9/178 (5%)
Query: 185 MNLLNIAGEDQVTLKVTIAEV--RRDILKQIGFQHSITGSSSGPSKSFAADFGGKF---V 239
+N L QV A + +L+ + A +
Sbjct: 34 INGLVHRQPAQVWKHSKYARMFSSSTLLRDQSQTAPSAEAYLNSGVVKGAANPVNVKKVL 93
Query: 240 SEGGDFSVKGVLDRFSFET--VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
G G F + L AL+ A L P + I Q+A + +
Sbjct: 94 VIGSGGLSIGQAGEFDYSGSQALKALKEAGVASVLINPNIATI--QTAHVLTDEVYYLPV 151
Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
G+ L F + + + V + + +
Sbjct: 152 TPEYVTYVIERERPDGIFLTFGGQTALNLGVQMERMGIFERYGVKVLGTSIKTLETSE 209
>gi|209965643|ref|YP_002298558.1| phospholipid-binding domain protein, putative [Rhodospirillum
centenum SW]
gi|209959109|gb|ACI99745.1| phospholipid-binding domain protein, putative [Rhodospirillum
centenum SW]
Length = 349
Score = 37.4 bits (85), Expect = 5.6, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 105 DGKQMLNLDILIERDIAHLEMTLRR--FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
G+ N R + + L + S+I V + V L G V + QD +RA +
Sbjct: 203 RGRGPRNYTRSDSRIVEDVNDRLTDDFRLDASDIDVSAENGEVTLSGHVNSRQDKRRAED 262
Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
L+E+ V N L +
Sbjct: 263 LAESVSGVR-----------HVQNNLRVRDR 282
>gi|146279408|ref|YP_001169566.1| hypothetical protein Rsph17025_3381 [Rhodobacter sphaeroides ATCC
17025]
gi|145557649|gb|ABP72261.1| hypothetical protein Rsph17025_3381 [Rhodobacter sphaeroides ATCC
17025]
Length = 343
Score = 37.4 bits (85), Expect = 5.8, Method: Composition-based stats.
Identities = 32/207 (15%), Positives = 55/207 (26%), Gaps = 3/207 (1%)
Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
I ++ VL M+ D A L++ + + S V + A E
Sbjct: 75 ICIDARHANGVLK-MMPNKTDRHDARGLAQIVRTGWFKAAQIKSHDAYVNRAMLTAREAL 133
Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
V ++V + R +LK G V + + R
Sbjct: 134 VGMRVRLENEIRGLLKTFGIMFGKRVGGFKRRAEEIIRDELTVVPDLVPIFEALMQARRD 193
Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
+ AL + IR +A T +A + + + + G
Sbjct: 194 ILARIAAL--DSRIRAVARRHATVRLLMTAPGVGPITAMAVVAAFDDASRFRRSSSAGAY 251
Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIG 342
L TP G I +
Sbjct: 252 LGLTPRRYESGEISRNGRVSKRGDAFT 278
>gi|187926467|ref|YP_001892812.1| transport-associated [Ralstonia pickettii 12J]
gi|241665954|ref|YP_002984313.1| transport-associated [Ralstonia pickettii 12D]
gi|187728221|gb|ACD29385.1| transport-associated [Ralstonia pickettii 12J]
gi|240867981|gb|ACS65641.1| transport-associated [Ralstonia pickettii 12D]
Length = 138
Score = 37.0 bits (84), Expect = 6.0, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 14/100 (14%)
Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRR--FIADSNIRVEMVSD-TVVLHGMVRTIQDS 157
G + ++ L + ++ IR+ D V+L G V T + +
Sbjct: 28 AWGDSPNTAGARMLDDSLLTYQVKAALDQDTALSTRQIRIRSSPDGKVILTGWVDTPEMA 87
Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
+RA + + F+ + K+ N L + QV
Sbjct: 88 RRAGDDVKRFVDSA-----------KLDNQLRVLSRMQVL 116
>gi|326383816|ref|ZP_08205501.1| MFS transporter [Gordonia neofelifaecis NRRL B-59395]
gi|326197580|gb|EGD54769.1| MFS transporter [Gordonia neofelifaecis NRRL B-59395]
Length = 757
Score = 37.0 bits (84), Expect = 6.3, Method: Composition-based stats.
Identities = 27/197 (13%), Positives = 55/197 (27%), Gaps = 9/197 (4%)
Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ------VPVDV 66
S L P + + A V G + L +L+ V
Sbjct: 544 SYALAGLEPGMYTVIATAADRAPRAVSVAVVDGAVLRRDFSLEGGAVLRGVVGDGVRNLP 603
Query: 67 QDVLVSD---PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
V+V+D A + L G + G+ + G Q + + ++ +
Sbjct: 604 ASVVVTDQQGEVVAQTKAGADGVFVLTGLSDGETVAVTATAPGYQPSSRLVTVDGRMTGP 663
Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
+ V + ++ V I Q V T R + + +
Sbjct: 664 VEFGLTAHGNVQGYVRAIGGGLLAGATVSAIGPDQTIVAAVRTDSDGWYRIEGLDDARYT 723
Query: 184 VMNLLNIAGEDQVTLKV 200
++ + QV++
Sbjct: 724 LVASMYEPQARQVSVAA 740
>gi|308049903|ref|YP_003913469.1| hypothetical protein Fbal_2192 [Ferrimonas balearica DSM 9799]
gi|307632093|gb|ADN76395.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799]
Length = 994
Score = 37.0 bits (84), Expect = 6.3, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 24/154 (15%)
Query: 70 LVSDPTKA-------DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
V P+ A DVV P T + N G NV + + + ++ +
Sbjct: 589 AVGTPSFAISHGSDQDVVAVDPHTGIVTVLNAGTTNVTVTDPGDAKTGSYRQMVTVTVNK 648
Query: 123 LEMTLRRFIADSNIRVEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
+A I+ + L G+ S + ++ ++
Sbjct: 649 GATNPNLKLASERIQGVYGQLPLEAPRLSGVEPDAWVSYWIEDAAQRQIA---------- 698
Query: 180 SSKKVMNLLNIAGEDQV-TLKVTIAEVRRDILKQ 212
++ + + Q ++VT+ E R+
Sbjct: 699 ---QIDSRTGVVTPQQAGIVEVTVTEHSRNYEDS 729
>gi|108763400|ref|YP_629627.1| hypothetical protein MXAN_1370 [Myxococcus xanthus DK 1622]
gi|108467280|gb|ABF92465.1| hypothetical protein MXAN_1370 [Myxococcus xanthus DK 1622]
Length = 192
Score = 37.0 bits (84), Expect = 6.7, Method: Composition-based stats.
Identities = 8/54 (14%), Positives = 24/54 (44%)
Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
+ + V V + + P + + G ++G + V++ +Q L++ + +
Sbjct: 138 ENAERVRVQSSAVVEASLGEPNQIMVQGLSLGVSEVLVWRQGSRQPLSVRVEVA 191
>gi|289679099|ref|ZP_06499989.1| general secretion pathway protein D [Pseudomonas syringae pv.
syringae FF5]
Length = 60
Score = 37.0 bits (84), Expect = 6.9, Method: Composition-based stats.
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
QV ++ I EV+ +G Q + + +
Sbjct: 14 PLQVQIETRILEVQLTGELDMGVQWYLGRLAGNSGTTGNVTNTAG 58
>gi|18310559|ref|NP_562493.1| ABC transporter [Clostridium perfringens str. 13]
gi|18145240|dbj|BAB81283.1| probable ABC transporter [Clostridium perfringens str. 13]
Length = 317
Score = 37.0 bits (84), Expect = 7.0, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
I L +S I + AG + + R SG ++ G + D +P
Sbjct: 90 SINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNIRIMQGFIPKD-------VP 137
Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
+L IPI+G LF + + T + I
Sbjct: 138 VLCSIPIIGDLFFSKTYAT--TWLVILI 163
>gi|313498035|gb|ADR59401.1| NolW domain protein [Pseudomonas putida BIRD-1]
Length = 246
Score = 37.0 bits (84), Expect = 7.0, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 17/132 (12%)
Query: 261 HALERATAIRTLA---------EPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVT 308
+ + R + + A GQ A G + S+ ++
Sbjct: 94 NFQDNRGNARVIHYGTSNRDGGMQQVQASEGQPALIQVGQSIPITSTSTDGYGRIQSNTE 153
Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
+ + TP++ ++ E+S ++ +V+ DTTV G I
Sbjct: 154 YRNVTQGFYVTPSLSGE-----TVRLEISSNNDRISHERADVVKVQSTDTTVTGKLGEWI 208
Query: 369 VLAGLLKDDIQQ 380
LAG +
Sbjct: 209 TLAGFNQQSQAD 220
>gi|260172051|ref|ZP_05758463.1| hypothetical protein BacD2_09316 [Bacteroides sp. D2]
Length = 521
Score = 37.0 bits (84), Expect = 7.0, Method: Composition-based stats.
Identities = 29/267 (10%), Positives = 77/267 (28%), Gaps = 30/267 (11%)
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFI 131
+ + L GK G V + +++ L + ++ +A+L +
Sbjct: 232 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 291
Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
+ E + L+G + + + FL + ++ +
Sbjct: 292 PFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 351
Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226
+ ++ + L +I E ++ + + + ++ + G
Sbjct: 352 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 409
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
S K ++ DF + + + + L++ ++ SG+ S
Sbjct: 410 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 467
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313
G ++ G T G
Sbjct: 468 EDKDGMVANWLFNNGNGNTKTFVSLAG 494
Score = 36.6 bits (83), Expect = 8.6, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 12/174 (6%)
Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147
L G G V H GKQ + + I +T R + + I VE + L
Sbjct: 169 LTGLKNGHTTVTFTDHKGKQAVVQVTVNPISIDVSNLTPRVGVNNKIMITVEKGNGGYSL 228
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
I Q+ + + + + + + E + L +T+ V+
Sbjct: 229 TAENEEIVAIQQVDDTRFNLIGKKAG-----------ITTVFVRDEAEQELSLTVTVVQA 277
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
D + +G + + + ++ F+++ + + ++
Sbjct: 278 DKVANLGSGNYFKVPFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARIN 331
>gi|293371632|ref|ZP_06618043.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
gi|292633329|gb|EFF51899.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
Length = 523
Score = 37.0 bits (84), Expect = 7.4, Method: Composition-based stats.
Identities = 29/267 (10%), Positives = 77/267 (28%), Gaps = 30/267 (11%)
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFI 131
+ + L GK G V + +++ L + ++ +A+L +
Sbjct: 234 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 293
Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
+ E + L+G + + + FL + ++ +
Sbjct: 294 PFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 353
Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226
+ ++ + L +I E ++ + + + ++ + G
Sbjct: 354 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 411
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
S K ++ DF + + + + L++ ++ SG+ S
Sbjct: 412 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 469
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313
G ++ G T G
Sbjct: 470 EDKDGMVANWLFNNGNGNTKTFVSLAG 496
Score = 36.6 bits (83), Expect = 9.0, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 12/174 (6%)
Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147
L G G V H GKQ + + I +T R + + I VE + L
Sbjct: 171 LTGLKNGHTTVTFTDHKGKQAVVQVTVNPISIDVSNLTPRVGVNNKIMITVEKGNGGYSL 230
Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
I Q+ + + + + + + E + L +T+ V+
Sbjct: 231 TAENEEIVAIQQVDDTRFNLIGKKAG-----------ITTVFVRDEAEQELSLTVTVVQA 279
Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
D + +G + + + ++ F+++ + + ++
Sbjct: 280 DKVANLGSGNYFKVPFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARIN 333
>gi|299147493|ref|ZP_07040558.1| hypothetical protein HMPREF9010_04168 [Bacteroides sp. 3_1_23]
gi|298514771|gb|EFI38655.1| hypothetical protein HMPREF9010_04168 [Bacteroides sp. 3_1_23]
Length = 516
Score = 36.6 bits (83), Expect = 8.0, Method: Composition-based stats.
Identities = 28/267 (10%), Positives = 77/267 (28%), Gaps = 30/267 (11%)
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131
+ + L GK G V + +++ + ++ +A+L +
Sbjct: 227 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 286
Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
+ E + L+G + + + FL + ++ +
Sbjct: 287 PFEYNGMADESLKNLSTLTFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 346
Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226
+ ++ + L +I E ++ + + + ++ + G
Sbjct: 347 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 404
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
S K ++ DF + + + + L++ ++ SG+ S
Sbjct: 405 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 462
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313
G + ++ G T G
Sbjct: 463 EDKDGMVANWSFNNGNGNTKTFVSLAG 489
>gi|237719594|ref|ZP_04550075.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229450863|gb|EEO56654.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 516
Score = 36.6 bits (83), Expect = 8.0, Method: Composition-based stats.
Identities = 28/267 (10%), Positives = 76/267 (28%), Gaps = 30/267 (11%)
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131
+ + L GK G V + +++ + ++ +A+L +
Sbjct: 227 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 286
Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
+ E + L+G + + + FL + ++ +
Sbjct: 287 PFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 346
Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226
+ ++ + L +I E ++ + + + ++ + G
Sbjct: 347 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSQR--IALYVNGVRETL 404
Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
S K ++ DF + + + + L++ ++ SG+ S
Sbjct: 405 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 462
Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313
G ++ G T G
Sbjct: 463 EDKDGMVANWLFNNGNGNTKTFVSLAG 489
>gi|326431310|gb|EGD76880.1| hypothetical protein PTSG_08227 [Salpingoeca sp. ATCC 50818]
Length = 595
Score = 36.6 bits (83), Expect = 8.1, Method: Composition-based stats.
Identities = 46/285 (16%), Positives = 87/285 (30%), Gaps = 34/285 (11%)
Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
+ L D + +++ + R + R ++ + T G I
Sbjct: 136 TSFHLFYDDPSRADYVEVSLPATATTYTA--RHLFSGRPYRFQIFASTGAGEGPHTPILV 193
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
++ A L+E + +SSS + +I+G +QVT +V E +
Sbjct: 194 TETAQSLTERVATAHRATSSQSSSSTSTVPG-SISGREQVTSRVQFVEEAK--------- 243
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
+ S A + V G L R + T+A
Sbjct: 244 -----PTPITRGSLTAMIPAGPRTSTRAQDVAGQLGRTTLS---------EEAETVATGN 289
Query: 277 LTAISGQSASFTSGGQH---LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
TA+ G++ + S + +S A + + G L P S L+
Sbjct: 290 DTALPGETTANRSEDTRAGTPPQDDASKQDAGTGSRRKPGFTL-MAPRSTSDQPSVLQRW 348
Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
+ G R+ T VE+ +G + ++ D
Sbjct: 349 QHGQDKDSGQGGQA----SARQKPTRVEVLTGNQVSRGAFVRQDT 389
>gi|258645547|ref|ZP_05733016.1| putative outer membrane efflux protein [Dialister invisus DSM
15470]
gi|260402903|gb|EEW96450.1| putative outer membrane efflux protein [Dialister invisus DSM
15470]
Length = 502
Score = 36.6 bits (83), Expect = 8.1, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 10/119 (8%)
Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
L+ L + + ++ E + + L G V T + R + L+E L Q+ +++K
Sbjct: 71 LQKNLNDMMPEGKVKAETSNIDIDLKGAVSTAIQNNRDIRLAELSLEQAETAVSQAAAAK 130
Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
+L +QV + GF + G + G + S+ GG
Sbjct: 131 N-PSLSYKWARNQV---------KAGSANSAGFYGANHGYNQGLTLSWPIWTGGAVEGA 179
>gi|315920361|ref|ZP_07916601.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313694236|gb|EFS31071.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 514
Score = 36.6 bits (83), Expect = 8.7, Method: Composition-based stats.
Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131
+ + L GK G V + +++ + ++ +A+L +
Sbjct: 225 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 284
Query: 132 ADS 134
Sbjct: 285 PFE 287
>gi|325289184|ref|YP_004265365.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM
8271]
gi|324964585|gb|ADY55364.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM
8271]
Length = 1618
Score = 36.6 bits (83), Expect = 9.5, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 6/101 (5%)
Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV---V 81
+ N V G ++ L + + D+ V++ + A V V
Sbjct: 979 TTVAEPRTPSVSANTLTVNKGATASFTVSLGQGV---SAATAADITVANGSIASVSTGRV 1035
Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
+ T+ + G G +I+ HD Q + + ++
Sbjct: 1036 TASGTVTVTGLAAGTTGIIVTFHDSAQTVKNIAVTVNAVSD 1076
>gi|84684255|ref|ZP_01012157.1| efflux transporter, RND family, MFP subunit [Maritimibacter
alkaliphilus HTCC2654]
gi|84668008|gb|EAQ14476.1| efflux transporter, RND family, MFP subunit [Rhodobacterales
bacterium HTCC2654]
Length = 490
Score = 36.6 bits (83), Expect = 9.9, Method: Composition-based stats.
Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 17/207 (8%)
Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
MR+L+R+ + L + +A + S + + S+ L
Sbjct: 1 MRFLRRSLTGLFLAALTVAGLGLAAYIVRDAVETRMARTSGSMPARERVYSVAL------ 54
Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD---GKQMLNLDILIE 117
V VQ VS +A V S RT+ + + G V+ +G + G ++ + +L+
Sbjct: 55 ---VPVQSQTVSPVLEAFGEVVSRRTLEIRARTAG--TVVELGENFVEGGRVQSGQMLVR 109
Query: 118 RDIAHLEMTL---RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
D + LE + R +AD+ V ++L Q + + Q +
Sbjct: 110 IDPSDLEDAVALARADMADAEAEVSDAEAALILEQDDLASAQRQFELRQTAATRQQDLLD 169
Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVT 201
+ ++ L + +Q L
Sbjct: 170 RGVGLAADLETARLAESSAEQAVLSAR 196
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.308 0.128 0.321
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,915,480,935
Number of Sequences: 14124377
Number of extensions: 115538502
Number of successful extensions: 424896
Number of sequences better than 10.0: 4280
Number of HSP's better than 10.0 without gapping: 3519
Number of HSP's successfully gapped in prelim test: 761
Number of HSP's that attempted gapping in prelim test: 411526
Number of HSP's gapped (non-prelim): 6351
length of query: 474
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 331
effective length of database: 2,823,007,719
effective search space: 934415554989
effective search space used: 934415554989
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 83 (36.6 bits)