BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (474 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040404|gb|ACT57200.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 474 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 474/474 (100%), Positives = 474/474 (100%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL Sbjct: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI Sbjct: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS Sbjct: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS Sbjct: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS Sbjct: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV Sbjct: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK Sbjct: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK Sbjct: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 >gi|15963894|ref|NP_384247.1| putative pilus assembly transmembrane protein [Sinorhizobium meliloti 1021] gi|307315791|ref|ZP_07595305.1| type II and III secretion system protein [Sinorhizobium meliloti BL225C] gi|307320426|ref|ZP_07599843.1| type II and III secretion system protein [Sinorhizobium meliloti AK83] gi|15073069|emb|CAC41528.1| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|306893992|gb|EFN24761.1| type II and III secretion system protein [Sinorhizobium meliloti AK83] gi|306898559|gb|EFN29232.1| type II and III secretion system protein [Sinorhizobium meliloti BL225C] Length = 511 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 209/508 (41%), Positives = 307/508 (60%), Gaps = 37/508 (7%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 + + + +S L S ++ LP + A+++V+ I D G K I++GLNK +++ Sbjct: 6 KKFRASLAAGLSFCLTFSGMALPTLPAAEAASSSVVRIVDSGPGARKTINLGLNKAVVVD 65 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 +P D D+LV+DP+ AD + + R +YLFGK+VGQ N+ + G G+++++L++ +ERD+A Sbjct: 66 LPSDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVA 125 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ------ 175 LE LRRFI D++I VE++SD VVL G VRT DS RAV+L+ FL Sbjct: 126 GLEANLRRFIPDADINVEIISDNVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQ 185 Query: 176 ---------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 + + +++NLL I G+DQVTLKVT+AEV R +LKQ+GF ++ SG Sbjct: 186 GNNGDADIFAEDRQNSQIVNLLTIEGDDQVTLKVTVAEVSRQVLKQLGFNGRVSDGESGI 245 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S A+ G ++ G + +KG + + + ++A+E+A +RTLAEP+LTAISGQ A Sbjct: 246 SFRNPANLG-DAIAVGTNALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAISGQEAK 304 Query: 287 FTSGGQH---------LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 F GG+ +T V +YG+ L+F P VL PGRI L+I+T+VS Sbjct: 305 FYVGGEFRLAGVQEVSTDDETGQTTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVS 364 Query: 338 EPV-----------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 EP + R R+A T+VELPSGG+IV+AGL++D+I+Q G+P Sbjct: 365 EPTYEGSVVTGNSMTAIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLP 424 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 SKIPILG LFR+ F R ETE+ I ATP+LV+PVA +SRPDD+++ +D ++FF Sbjct: 425 GASKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISRPDDNFNPANDLESFFLG 484 Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474 RVN+IYG EA G+ Y G +GFIYK Sbjct: 485 RVNRIYGRPEAQPPAGR-YHGNVGFIYK 511 >gi|332560337|ref|ZP_08414659.1| Type II and III secretion system protein precursor [Rhodobacter sphaeroides WS8N] gi|332278049|gb|EGJ23364.1| Type II and III secretion system protein precursor [Rhodobacter sphaeroides WS8N] Length = 466 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 134/454 (29%), Positives = 225/454 (49%), Gaps = 28/454 (6%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 AA + +E +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK Sbjct: 29 PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 88 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G+ + L+G DG+ + N+D+ + D+A + LR+ + NI V +D +VL G V Sbjct: 89 APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 148 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + RA++L+ + + +V NL+++ G QV LKV AE++R + K Sbjct: 149 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 196 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALE 264 +G S G G S+ + F+ +L ALE Sbjct: 197 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGNPISTSGNGALSLGFSVGALEFQVLLEALE 256 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +RTLAEP LTA+SGQ A F +GG++ V+S S+ +GV L+FTP V+ Sbjct: 257 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVD 315 Query: 325 PGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 +I L I VS V + + +++ R+ TTVE+ G + +AGLL+DD + Sbjct: 316 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 375 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 L +P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + + Sbjct: 376 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 435 Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 F F RV G A+EV Q++ G+ G++ + Sbjct: 436 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 466 >gi|315121891|ref|YP_004062380.1| putative pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495293|gb|ADR51892.1| putative pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 471 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 330/474 (69%), Positives = 389/474 (82%), Gaps = 3/474 (0%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M+ Q+T F + IF+ SSN +A+ + NA+ I+I D IG KKI+IGL KV+IL Sbjct: 1 MKNFQKTLFMLFVIFISSSNFLLAQSKLVDAKNASTIHIGDSAIGTSKKINIGLGKVVIL 60 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P VQDVLVSDPTKADVVVHS +T+Y+FGK+VGQANVILIGHD KQ+LN+DI IERDI Sbjct: 61 HLPSRVQDVLVSDPTKADVVVHSSKTVYIFGKSVGQANVILIGHDEKQLLNIDIFIERDI 120 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 +LEMT RRF++ SNI VEM+SD +VLHG VRTIQDSQ AVELS FLS N Y +S Sbjct: 121 RNLEMTFRRFLSGSNIHVEMLSDNLVLHGEVRTIQDSQHAVELSNMFLSNERNNLYKTAS 180 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 KV+NLLNI EDQVTLKVTIAEVRRD+LKQIGFQH+I SS GPSK DF G Sbjct: 181 GSKVINLLNIGAEDQVTLKVTIAEVRRDVLKQIGFQHTI--SSGGPSKGKRIDFDGSLGG 238 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +G DF++ +LDRF+F++VL+ALERATAIRTLAEPTLTAISGQ+A+F SGG LY++V Sbjct: 239 QGADFAMTTILDRFTFKSVLNALERATAIRTLAEPTLTAISGQNATFRSGGTRLYRSV-G 297 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + G +++T HDYGVVL FTPTVLSPGRIGLRI+TEVSEPV+GV+ P YR+RKADTTV Sbjct: 298 ANGTSTITPHDYGVVLTFTPTVLSPGRIGLRIETEVSEPVLGVSTTGEPEYRMRKADTTV 357 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ELPSGGTIVLAGLLKDDIQQ + G+PLLSKIPILGALFR++ F+REETEIFI+ATPFLVK Sbjct: 358 ELPSGGTIVLAGLLKDDIQQKRGGVPLLSKIPILGALFRSNSFSREETEIFISATPFLVK 417 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 PVAM +LSRPDD+Y +E+DAKAF FNRVNKIYGPKEA++ GQNYKGAIGFIYK Sbjct: 418 PVAMNELSRPDDNYDIENDAKAFLFNRVNKIYGPKEAAQGNGQNYKGAIGFIYK 471 >gi|146276361|ref|YP_001166520.1| type II and III secretion system protein [Rhodobacter sphaeroides ATCC 17025] gi|145554602|gb|ABP69215.1| type II and III secretion system protein [Rhodobacter sphaeroides ATCC 17025] Length = 461 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 133/475 (28%), Positives = 230/475 (48%), Gaps = 28/475 (5%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M+ L ++A + + + +E +++ +N+ ++++ ++ + Sbjct: 3 MNHILRMGMAALAFMASAAPMAVSAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSI 62 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 ++P AD+ S ++Y+ GK G+ + L+G DG+ + N+D+ + D+A + LR+ + Sbjct: 63 ANPGIADISTLSETSIYVLGKAPGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQIL 122 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 NI V +D +VL G V + + RA++L+ + + +V NL+++ Sbjct: 123 PGENIEVRTANDGIVLSGTVTSAERLDRALDLANRY------------APDRVSNLMSVG 170 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------G 243 G QV LKV AE++R + K +G S G G Sbjct: 171 GTQQVMLKVRFAEMQRSVAKSLGSSIYARNGSGSVIGGTGTLLQNGIPPSGAPITTAATG 230 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + + F +L ALE +RTLAEP LTA+SGQ A F +GG++ V+S Sbjct: 231 ALGLGFSVGALEFSVLLEALESKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDE 289 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTT 359 ++ +GV L+FTP V+ +I L I VS V+ + +++ R+ TT Sbjct: 290 KIAIEYKPFGVELNFTPVVVDGSQINLMINAAVSSIDNTVSLESAGFTINAFKRRETSTT 349 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VE+ G + +AGLL+DD + L +P L IPILGALFR++ + R ++E+ I TP LV Sbjct: 350 VEMRDGESFAIAGLLQDDFRNLNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLV 409 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 P L+ P D + + + F F RV G A EV Q++ G+ G++ + Sbjct: 410 TPTRGEALALPTDRIKLPSEKELFLFGRVT---GRGAAGEVARQDFSGSYGYVME 461 >gi|221638316|ref|YP_002524578.1| Type II and III secretion system protein [Rhodobacter sphaeroides KD131] gi|221159097|gb|ACM00077.1| Type II and III secretion system protein precursor [Rhodobacter sphaeroides KD131] Length = 461 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 134/454 (29%), Positives = 225/454 (49%), Gaps = 28/454 (6%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 AA + +E +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK Sbjct: 24 PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G+ + L+G DG+ + N+D+ + D+A + LR+ + NI V +D +VL G V Sbjct: 84 APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + RA++L+ + + +V NL+++ G QV LKV AE++R + K Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALE 264 +G S G G S+ + F+ +L ALE Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALE 251 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +RTLAEP LTA+SGQ A F +GG++ V+S S+ +GV L+FTP V+ Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVD 310 Query: 325 PGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 +I L I VS V + + +++ R+ TTVE+ G + +AGLL+DD + Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 L +P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + + Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430 Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 F F RV G A+EV Q++ G+ G++ + Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461 >gi|126461331|ref|YP_001042445.1| type II and III secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|126102995|gb|ABN75673.1| type II and III secretion system protein [Rhodobacter sphaeroides ATCC 17029] Length = 461 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 134/454 (29%), Positives = 225/454 (49%), Gaps = 28/454 (6%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 AA + +E +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK Sbjct: 24 PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G+ + L+G DG+ + N+D+ + D+A + LR+ + NI V +D +VL G V Sbjct: 84 APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + RA++L+ + + +V NL+++ G QV LKV AE++R + K Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALE 264 +G S G G S+ + F+ +L ALE Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALE 251 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +RTLAEP LTA+SGQ A F +GG++ V+S S+ +GV L+FTP V+ Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVD 310 Query: 325 PGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 +I L I VS V + + +++ R+ TTVE+ G + +AGLL+DD + Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 L +P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + + Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430 Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 F F RV G A+EV Q++ G+ G++ + Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461 >gi|77462453|ref|YP_351957.1| Outer membrane general secretion pathway protein, secretin [Rhodobacter sphaeroides 2.4.1] gi|77386871|gb|ABA78056.1| Outer membrane general secretion pathway protein, Secretin [Rhodobacter sphaeroides 2.4.1] Length = 461 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 134/454 (29%), Positives = 225/454 (49%), Gaps = 28/454 (6%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 AA + +E +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK Sbjct: 24 PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G+ + L+G DG+ + N+D+ + D+A + LR+ + NI V +D +VL G V Sbjct: 84 APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + RA++L+ + + +V NL+++ G QV LKV AE++R + K Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALE 264 +G S G G S+ + F+ +L ALE Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGASIATSGNGALSLGFSVGALEFQVLLEALE 251 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +RTLAEP LTA+SGQ A F +GG++ V+S S+ +GV L+FTP V+ Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVD 310 Query: 325 PGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 +I L I VS V + + +++ R+ TTVE+ G + +AGLL+DD + Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 L +P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + + Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430 Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 F F RV G A+EV Q++ G+ G++ + Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461 >gi|255262444|ref|ZP_05341786.1| outer membrane general secretion pathway protein, Secretin [Thalassiobium sp. R2A62] gi|255104779|gb|EET47453.1| outer membrane general secretion pathway protein, Secretin [Thalassiobium sp. R2A62] Length = 480 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 137/478 (28%), Positives = 228/478 (47%), Gaps = 28/478 (5%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T+ M L + + +P A + +++ +N+ ++++ V Sbjct: 19 TYDRFMKAALMGLFVATSSVPAAVSAETLRVMRG----APSSALNVPMNRAVVVESDVPF 74 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 ++ +++P AD+ S RT+Y+ GK G+ + L+G DG+ + N+D+ + DIA + Sbjct: 75 AELSIANPGIADISTLSDRTIYVLGKLPGRTTLTLLGPDGRLITNVDVHVTPDIAEFKER 134 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L + + NI V +D +VL G+V + RA++L+E + + +V N Sbjct: 135 LSQILPGENIEVRTANDGIVLSGVVSSSARLTRALDLAERY------------APDRVSN 182 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGKFVSEG 242 L+++ G QV L+V AE++R + K + +I G+ + GG Sbjct: 183 LMSVGGTQQVMLRVRFAEMQRSVRKSLSSSVNIFGTGFSTAAGNINGVQAAGGGITTDAT 242 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G F +L ALE +RTLAEP LTA+SGQ A F +GG++ V+ Sbjct: 243 GAAFFGIDAGDIQFNVLLEALESKGVVRTLAEPNLTALSGQEAHFLAGGEYPVP-VAQEG 301 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-----DMPSYRVRKAD 357 G T+V D+GV L F P V+ I L ++ VS + ++R R+ Sbjct: 302 GTTTVEYKDFGVELTFLPVVVDQDLINLTLKASVSSIDTTNGVQVGSDFTIAAFRTRETS 361 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTVE+ G + +AGLL+DD L +P L +P+LGALFR++ +NR ++E+ I TP Sbjct: 362 TTVEMRDGESFAIAGLLQDDFTDLNGQVPWLGDVPVLGALFRSAEYNRSQSELVIIVTPH 421 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV--NKIYGPKEASEVEGQNYKGAIGFIY 473 LV P L+ P D + F F RV + A EV Q++ G+ G++ Sbjct: 422 LVTPTRGEALALPTDRVRPPTERDLFLFGRVAASDAPQSGAAGEVAKQDFSGSYGYVM 479 >gi|260426909|ref|ZP_05780888.1| type II and III secretion system protein [Citreicella sp. SE45] gi|260421401|gb|EEX14652.1| type II and III secretion system protein [Citreicella sp. SE45] Length = 473 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 135/483 (27%), Positives = 236/483 (48%), Gaps = 38/483 (7%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 + L + L A+ N+ V G +++ +N+ ++++ ++ + Sbjct: 7 LKAALIGLALTAGPLVEGARAD----NLRVVRTGTESVLNVPMNRAVVVESDQPFAELSI 62 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 ++P AD+ S RT+Y+ GK G + ++ +G+ + N+D+ + D+ + LR+ + Sbjct: 63 ANPAIADISSLSERTIYVLGKTPGTTTLTILDGNGRLITNVDVRVAADVTEFKERLRQIL 122 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 +I V +D +VL G V + Q QRA++L++ + + ++V NL+ + Sbjct: 123 PGESIEVRTANDGIVLSGTVSSAQKLQRALDLAQRY------------APERVSNLMTVG 170 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS----- 246 G QV LKV AE++R + K + SI G G + G +++ G + Sbjct: 171 GVQQVMLKVRFAEMQRSVSKNLRSSLSIGGPIFGEDEITIGSETGTWLNSGNSYGDAVTV 230 Query: 247 --------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + G +L ALE +RTLAEP LTA+SGQ A F +GG++ V Sbjct: 231 ADGTESALLLGFNGAIEVGILLEALESKGMVRTLAEPNLTALSGQEAKFLAGGEYPVP-V 289 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVR 354 S G SVT +GV L+F PTV+ I L+++ VS +A + ++R R Sbjct: 290 SQEDGKLSVTYKPFGVELNFVPTVIDGDLINLQLEAAVSSIDSSNGITTDAISIDAFRRR 349 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + TTVE+ G + +AGLL+DD + + +P + IP+LGALFR++ + R+++E+ I Sbjct: 350 ETSTTVEMRDGESFAIAGLLQDDFRDVNGQVPWIGDIPVLGALFRSAEYERQQSELVIIV 409 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN----KIYGPKEASEVEGQNYKGAIG 470 TP LV P L+ P D + F F R + + A+EV Q++ G+ G Sbjct: 410 TPHLVTPTRGEALALPTDRVMPPTEKDLFLFGRTSSDDARRPRTGGAAEVARQDFTGSYG 469 Query: 471 FIY 473 ++ Sbjct: 470 YVM 472 >gi|56697919|ref|YP_168290.1| type II/III secretion system protein [Ruegeria pomeroyi DSS-3] gi|56679656|gb|AAV96322.1| bacterial type II/III secretion system protein [Ruegeria pomeroyi DSS-3] Length = 475 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 127/480 (26%), Positives = 231/480 (48%), Gaps = 33/480 (6%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 ++ L + + + + +A + V+ G + + + +N+ I+++ ++ Sbjct: 13 LIKAALTGLALACSPMTGLAQAQDLRV----VKQGAAETLDVPMNRAIVVESETPFAELS 68 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 +++ AD+ S RT+Y+ GK+ G + L G+ + N+++ + D+A + L++ Sbjct: 69 IANAGIADISSLSDRTIYVLGKSPGLTTLSLFDAGGRLITNVNVRVSFDVAEFKERLKQI 128 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + + I V +D +VL G + QRA++L+E + + ++V NL+++ Sbjct: 129 LPNEKIEVRTANDGIVLSGTASSTARLQRALDLAERY------------APERVSNLMSV 176 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------GPSKSFAADFGGKFVS--- 240 AG QV LKV AE++R + K + ++G + S S GG + Sbjct: 177 AGVQQVMLKVRFAEMQRSVSKSLSASLGVSGGNIVGGLNTLNSSGSLTNAIGGSIPALND 236 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G +L ALER +RTLAEP L+A+SGQ A F +GG++ V+ Sbjct: 237 NAGAILFGFSAGSTQVRLLLEALERKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQ 295 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356 G +V +GV + F P V+ I L + VS + VN D+ +++ R+ Sbjct: 296 RDGLFTVEYKPFGVEMAFIPRVVDGDLINLELLAAVSSLDPNNSVTVNGFDIAAFQRRET 355 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 TTVEL G + +AGL++D+ + +P L +P+LGALFR++ + R +TE+ I T Sbjct: 356 STTVELKDGESFAIAGLIEDEFLDNNQQLPWLGDVPVLGALFRSANYQRSQTELVIIITA 415 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFIYK 474 LV P L+ P D +A F + + + ASEV Q++ G+ G++ + Sbjct: 416 HLVSPTRGEALALPTDRVKPPSEADLFLRGKTARTERARGGAASEVARQDFSGSYGYVLE 475 >gi|163738370|ref|ZP_02145785.1| bacterial type II/III secretion system protein [Phaeobacter gallaeciensis BS107] gi|161388291|gb|EDQ12645.1| bacterial type II/III secretion system protein [Phaeobacter gallaeciensis BS107] Length = 484 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 125/484 (25%), Positives = 230/484 (47%), Gaps = 35/484 (7%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 F ++ L + + N + V+ G + + +N+ ++++ V Sbjct: 18 AFRRYVAAALTGLSLVCFPVADAAWGNGLRV----VKKGTAANLEVPMNRAVVVESDVPF 73 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 ++ +++P+ AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ + Sbjct: 74 SELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDASGRLITNVDVRVAADVSEFKER 133 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 LR+ + I V +D +VL G+V + QRA++L+E + + ++V N Sbjct: 134 LRQILPGEKIEVRTANDGIVLSGVVSSSARLQRALDLAERY------------APERVSN 181 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------SSSGPSKSFAAD 233 L+++ G QV LKV AE++R + K + + G ++ G + + Sbjct: 182 LMSVGGVQQVMLKVRFAEMQRTVSKSLSASLGVKGGNSVGVNGGTSTLNTQGALTNSLSG 241 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G F F +L ALE+ +RTLAEP L+A+SGQ A F +GG++ Sbjct: 242 NIPAGNDNTGAFVFGFNAGAFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEY 301 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMP 349 V+ G ++ +G+ L+F P V+ I L ++ VS N + Sbjct: 302 PIP-VAQEDGIITIEFKPFGIELNFVPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIA 360 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R+ TTVEL G + +AGL++D+ + +P + +P+LG+LFR++ + R +TE Sbjct: 361 AFSRRETSTTVELRDGESFAIAGLIRDEFRDSSSQLPWIGDVPVLGSLFRSANYQRAQTE 420 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 + I + LV P LS P D +++ F RV K ASEV Q++ G+ Sbjct: 421 LVIIVSAHLVTPTRGEALSLPTDRIRPPSESELFLMGRVAKGQ-KGPASEVAKQDFNGSY 479 Query: 470 GFIY 473 G++ Sbjct: 480 GYVM 483 >gi|84687277|ref|ZP_01015157.1| Outer membrane general secretion pathway protein, Secretin [Maritimibacter alkaliphilus HTCC2654] gi|84664710|gb|EAQ11194.1| Outer membrane general secretion pathway protein, Secretin [Rhodobacterales bacterium HTCC2654] Length = 474 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 136/488 (27%), Positives = 227/488 (46%), Gaps = 38/488 (7%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 + L S +P A + G + +++ +N+ ++++ Sbjct: 3 LDRYVKAALTGLALSWITVPLPGMAQTLRVMDG----GVAETLNVPMNRAVVVESDQPFA 58 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 ++ +++P AD+ S RT+Y+ GK+ G+ + L+ DG + N+++ + D++ + L Sbjct: 59 EISIANPGIADISTLSDRTIYVLGKSQGRTTLTLLAPDGTLISNVEVQVTPDLSEFKERL 118 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 R+ + I V +D +VL G V +I RA++L+E + + KV NL Sbjct: 119 RQILPGEPIEVRTANDGIVLSGTVTSIAALDRALDLAERY------------APDKVSNL 166 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------ 241 L++ G QV LKV AE++R + K + + +G S G + Sbjct: 167 LSVGGTQQVMLKVRFAEMQRSVTKSLSSSLGFGTNINGLGGSIGTGALGNQANLDAASAG 226 Query: 242 ---------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G F+ F +L ALE +RTLAEP LTA+SGQ ASF +GG+ Sbjct: 227 DLISTGNDRTGAFTFGFNAGALQFAVMLEALENKGMVRTLAEPNLTALSGQEASFLAGGE 286 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDM 348 + +V GA + +GV L FTP V+ I L++ VS G A + Sbjct: 287 YPIPSV-QENGAVVIDYKPFGVELTFTPRVVDQDIINLQMTASVSGLDNSVTYGDGAISV 345 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +++ R+ TTVE+ G + +AGLL+DD + L +P L +PILGALFR++ + R ++ Sbjct: 346 NAFKRRETSTTVEMRDGQSFAIAGLLQDDFRDLNGQVPWLGDVPILGALFRSADYERSQS 405 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP--KEASEVEGQNYK 466 E+ I TP LV P L+ P D +A F P A EV Q++ Sbjct: 406 ELVIIVTPHLVTPTRGEALALPTDRVRPPSEADLFLRGNTAAPNRPTTGAAGEVARQDFT 465 Query: 467 GAIGFIYK 474 G+ G++ + Sbjct: 466 GSYGYVME 473 >gi|254466441|ref|ZP_05079852.1| bacterial type II/III secretion system protein [Rhodobacterales bacterium Y4I] gi|206687349|gb|EDZ47831.1| bacterial type II/III secretion system protein [Rhodobacterales bacterium Y4I] Length = 468 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 121/484 (25%), Positives = 226/484 (46%), Gaps = 35/484 (7%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 ++ L + A + + V+ G + + +N+ ++++ + Sbjct: 2 AIRRFVAAALMGLSLIGVPQADGAWAQSLRV----VKKGTAATLDVPMNRAVVVESEIPF 57 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 ++ +++P+ AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D+ + Sbjct: 58 AELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDGSGRLITNVDVRVAADVTEFKQR 117 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 LR+ + + I V +D +VL G V + QRA++L+E + + ++V N Sbjct: 118 LRQILPNEKIEVRTANDGIVLSGTVSSSARLQRALDLAERY------------APERVSN 165 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGG 236 L+++ G QV LKV AE++R + K + ++ S + A G Sbjct: 166 LMSVGGVQQVMLKVRFAEMQRSVSKSLSASLGFNGGTGNGRTGGYNTLNTSGALANSLAG 225 Query: 237 KFVS---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + G F +L ALE+ +RTLAEP L+A+SGQ A F +GG++ Sbjct: 226 NIPAANENTGAFLFGFNAGSVQVSLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEY 285 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMP 349 V+ G ++ +G+ L+F P V+ I L + VS + + Sbjct: 286 PVP-VAQEGGVITIEFKPFGIELNFIPRVIDGDLINLELNAAVSAIDPTNSLELSGLTID 344 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R+ TTVE+ G + +AGL++D+ +P L +P+LGALFR++ + RE+TE Sbjct: 345 AFSRRETSTTVEMRDGESFAIAGLIRDEFLDNSSQLPWLGDVPVLGALFRSADYQREQTE 404 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 + I + LV P L+ P D + + F F R ++ A+EV Q++ G+ Sbjct: 405 LVIIVSAHLVTPTRGEALTLPTDRVAPPSEKDLFLFGRTSR-NRAGPAAEVAKQDFNGSY 463 Query: 470 GFIY 473 G++ Sbjct: 464 GYVL 467 >gi|227823971|ref|YP_002827944.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium fredii NGR234] gi|227342973|gb|ACP27191.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium fredii NGR234] Length = 515 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 210/517 (40%), Positives = 304/517 (58%), Gaps = 45/517 (8%) Query: 1 MRYLQRTFFTMMSI----FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56 M+ TF T ++ L S + +P + A ++V+ I + G +K+++GLNK Sbjct: 1 MKRSGNTFRTCLAAGLSFSLTFSGLMLPAVPTAQAAASSVVRIVESGPGVKRKVNLGLNK 60 Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 +++ +P D D+LV+DP AD V + R +YLFGK VGQ N+ + G +G+++++L++ + Sbjct: 61 AVVVDLPTDAHDILVADPVLADAVTRTSRRIYLFGKTVGQTNIFVFGPNGEEIVSLEVAV 120 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ- 175 ERD+A LE LRRFI +++I VE++SD VVL G VRT DS +AV+L+ FL Sbjct: 121 ERDVAGLEANLRRFIPEADINVEIISDNVVLTGTVRTPLDSTKAVDLARAFLQGGEATTR 180 Query: 176 --------------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + +++NLL + GEDQVTLKVT+AEV R +LKQ+GF I+ Sbjct: 181 NITAQGTNGDADIFAEERQTSQIVNLLTVEGEDQVTLKVTVAEVSRQVLKQLGFNGRISD 240 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 SG S A+ G + G + +KG + + + ++A+E+A +RTLAEP+LTAIS Sbjct: 241 GESGLSFRNPANLG-DAIGVGANALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAIS 299 Query: 282 GQSASFTSGGQHLYKTVSSSTGATS-------------VTTHDYGVVLHFTPTVLSPGRI 328 GQ A F GG+ V T V +YG+ L+F P VL GRI Sbjct: 300 GQEAKFYVGGEFRLAGVQEITTEEDEATGESVPVVEREVEDAEYGIRLNFKPVVLGAGRI 359 Query: 329 GLRIQTEVSEPVIGVN-----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 L I+TEVSEP + R R+A T+VELPSGG+IV+AGL++D+ Sbjct: 360 SLAIETEVSEPTYEGSVVTGNSFRDIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDN 419 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 I+Q G+P SKIPILG LFR+ F R E+E+ I ATP+LV+PVA LSRPDD+++ Sbjct: 420 IRQAMSGLPGASKIPILGTLFRSKDFQRNESELVIIATPYLVRPVARSALSRPDDNFNPA 479 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +D ++FF RVN+IYG EA+ G+ Y G +GFIYK Sbjct: 480 NDLESFFVGRVNRIYGRPEAAPPVGR-YHGNVGFIYK 515 >gi|163757627|ref|ZP_02164716.1| putative pilus assembly transmembrane protein [Hoeflea phototrophica DFL-43] gi|162285129|gb|EDQ35411.1| putative pilus assembly transmembrane protein [Hoeflea phototrophica DFL-43] Length = 496 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 213/493 (43%), Positives = 297/493 (60%), Gaps = 27/493 (5%) Query: 5 QRTFFTMMSIFLFSSN--------PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56 + ++ I L S P+ +L +A+ +I I G K++ +GLNK Sbjct: 8 KSLLSSIAGIALVGSVLVTGVLVDPTTGRLATPAQASQNIIKIKKSGPGVSKRVKLGLNK 67 Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 I++ +P D D+LV+DP AD V + R +YLFGK VGQ N+ + G +G++++ +++ I Sbjct: 68 AIVVDLPTDAHDILVADPALADAVTRTSRRLYLFGKTVGQTNIFVFGPNGEEIIAIELEI 127 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL-------- 168 ERD+A LE+ L RF+ DSNI+VE++SD +VL G VRT QD+ +A L+E FL Sbjct: 128 ERDVAGLEVHLARFLPDSNIQVEIISDNIVLTGSVRTPQDASQAARLAEIFLTGGEATTR 187 Query: 169 -------SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + K++NLL I GEDQVTLKVTIAEV R +LKQ+GF +I+G Sbjct: 188 VTTATSEGGDAAINAEDRQKSKIVNLLKIDGEDQVTLKVTIAEVSRQVLKQLGFNTTISG 247 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + + + SV G + + ALERA IRTLAEP+LTAIS Sbjct: 248 DGSSSFGNSPSPWL-SVPGLASVGSVAGTISGARISADISALERAGVIRTLAEPSLTAIS 306 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 G+ A F+ GG ++ G T +YG+ L FTP VL+PGRI LRI+TEVSEP Sbjct: 307 GEVARFSVGGSFEIESERDEDG-TIFEEKEYGIKLEFTPVVLAPGRISLRIKTEVSEPTF 365 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + +PS + R+A+T+VELPSGG++VLAGL++D +Q G+P SKIP+LG+LFR+ Sbjct: 366 EGQS-PLPSIQKREAETSVELPSGGSMVLAGLVRDSYRQTISGMPGASKIPVLGSLFRSK 424 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 F R ETE+ I ATP+LVKPVA +LSRPDD+++ D FF RVN++YG E Sbjct: 425 EFLRNETELVIIATPYLVKPVARNELSRPDDNFNAPSDGAGFFLGRVNRVYGQMETGLPA 484 Query: 462 GQNYKGAIGFIYK 474 G+ Y GA+GFIYK Sbjct: 485 GR-YHGAVGFIYK 496 >gi|163742213|ref|ZP_02149601.1| bacterial type II/III secretion system protein [Phaeobacter gallaeciensis 2.10] gi|161384543|gb|EDQ08924.1| bacterial type II/III secretion system protein [Phaeobacter gallaeciensis 2.10] Length = 484 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 124/484 (25%), Positives = 231/484 (47%), Gaps = 35/484 (7%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 F ++ L + + N + V+ G + + +N+ ++++ V Sbjct: 18 AFRRYVAAALTGLSLVCFPVADAAWGNGLRV----VKKGTAANLEVPMNRAVVVESDVPF 73 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 ++ +++P+ AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ + Sbjct: 74 SELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDASGRLITNVDVRVAADVSEFKER 133 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 LR+ + I V +D +VL G+V + QRA++L+E + + ++V N Sbjct: 134 LRQILPGEKIEVRTANDGIVLSGVVSSSARLQRALDLAERY------------APERVSN 181 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------SSSGPSKSFAAD 233 L+++ G QV LKV AE++R + K + + G ++ G + + Sbjct: 182 LMSVGGVQQVMLKVRFAEMQRTVSKSLSASLGVKGGNSVGVNGGTSTLNTQGALTNSLSG 241 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G F F +L ALE+ +RTLAEP L+A+SGQ A F +GG++ Sbjct: 242 NIPAANDNTGAFVFGFNAGAFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEY 301 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMP 349 V+ G ++ +G+ L+F P V+ I L ++ VS N + Sbjct: 302 PIP-VAQEDGVITIEFKPFGIELNFIPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIA 360 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R++ TTVE+ G + +AGL++D+ + +P + +P+LG+LFR++ + R +TE Sbjct: 361 AFSRRESVTTVEMRDGESFAIAGLIRDEFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTE 420 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 + I + LV P LS P D +++ F RV K ASEV Q++ G+ Sbjct: 421 LVIIVSAHLVTPTRGEALSLPTDRIRPPSESELFLMGRVAKGQ-KGPASEVAKQDFNGSY 479 Query: 470 GFIY 473 G++ Sbjct: 480 GYVM 483 >gi|84501676|ref|ZP_00999848.1| bacterial type II/III secretion system protein [Oceanicola batsensis HTCC2597] gi|84390297|gb|EAQ02856.1| bacterial type II/III secretion system protein [Oceanicola batsensis HTCC2597] Length = 474 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 132/490 (26%), Positives = 233/490 (47%), Gaps = 39/490 (7%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T+ + + LF + P +A ++ V ++++ +N+ ++++ V Sbjct: 2 TYSSYLRAALFGMTLATGSFPVTAQAE----RLTIVNRNSESRLNVAINRAVVVESDVSF 57 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 ++ +++P AD+ S ++Y+ GK G + L+ +G+ + N+D+++ DI+ + Sbjct: 58 AELSIANPQIADISSLSDTSIYVLGKTPGITTLTLLDAEGRLISNVDVVVSADISEFKER 117 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 LR+ + D I V +D +V+ G+V + Q QRA++L+E + + ++V N Sbjct: 118 LRQILPDEKIEVRTANDGIVMSGVVSSSQKLQRALDLAERY------------APERVSN 165 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------- 235 L+++ G QV LKV AE++R + K + + GS G + + G Sbjct: 166 LMSVGGVQQVMLKVRFAEMQRSVSKSLSASLAADGSIFGGNVGVSGGTGRYSNAGNQGNG 225 Query: 236 -----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + G + +L ALE +RTLAEP LTA+SGQ A F +G Sbjct: 226 LGGNLPTPNTNSGATLLGFNAGAVQVGVLLEALEAKGVVRTLAEPNLTALSGQEAKFLAG 285 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAG 346 G++ V+ G +V +GV ++F P V+ I L +Q VS NA Sbjct: 286 GEYPVP-VAQDGGTVTVEFKPFGVEMNFIPRVVDDDIINLELQAAVSAIDPNNGFELNAF 344 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + ++ R+ TTVEL G + +AGLL+DD + +P L IP++GALFR++ + R Sbjct: 345 RIDAFTRRETSTTVELRDGDSFAVAGLLQDDFRDTNSQVPWLGDIPVIGALFRSADYQRN 404 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG--PKEASEVEGQN 464 ++E+ I T LV P L+ P D + F F R K A EV Q+ Sbjct: 405 QSELVIIITAHLVSPTRGEALALPTDRVKPPSEKDLFLFGRTAKDTRKLRGAAKEVAKQD 464 Query: 465 YKGAIGFIYK 474 + G+ G++ + Sbjct: 465 FNGSYGYVME 474 >gi|126729098|ref|ZP_01744912.1| bacterial type II/III secretion system protein [Sagittula stellata E-37] gi|126710088|gb|EBA09140.1| bacterial type II/III secretion system protein [Sagittula stellata E-37] Length = 473 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 129/488 (26%), Positives = 225/488 (46%), Gaps = 38/488 (7%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 TF + L +A + P A++ + V G +S+ +N+ ++++ Sbjct: 2 TFDGYLKAALCGLALGIATMSPPAHADSIRV----VRTGTESVLSVPMNRAVVVESDTPF 57 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 ++ +++P+ AD+ S RT+Y+ GK G + ++ G+ + N+D+ + D+ + Sbjct: 58 AELSIANPSIADISSLSDRTIYVLGKQPGTTTLTILDPQGQLITNVDVRVAADVTEFKER 117 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L + + + I V +D +VL G V +I +RA++L++ + + +V N Sbjct: 118 LTQILPEERIEVRTANDGIVLSGTVSSIARMERALDLAQRY------------APDRVSN 165 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------- 239 L+ + G QV LKV AE+RR + K + + GS+ G Sbjct: 166 LMVVGGIQQVMLKVRFAEMRRSVSKALRASLATGGSTGDLGVELGTGNAGTLAERDLVAD 225 Query: 240 -------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G +L ALE +RTLAEP LTA+SGQ ASF +GG+ Sbjct: 226 KLFPRRLGTEGAVLFGFNAGGLEVGILLEALESKGMVRTLAEPNLTALSGQEASFLAGGE 285 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDM 348 + T T V +GV L F P V+ I L ++ VS + Sbjct: 286 YPVPTAQGDNSVT-VEFKPFGVELAFVPRVIDGDLINLELEAAVSSVDSANGITFQDVTI 344 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + R+A TTVEL G + +AGLL+++ L +P + +PILGALFR++ + RE++ Sbjct: 345 AGFARREAKTTVELRDGESFAIAGLLQENFADLNGQVPWIGDVPILGALFRSTEYQREQS 404 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN---KIYGPKEASEVEGQNY 465 E+ I TP LV P L+ P D ++ + + F +++ + A+EV Q++ Sbjct: 405 ELVIIVTPHLVTPTRGEALALPTDRVTLPSERQLFLNGKIDGNGRRPRSGAAAEVANQDF 464 Query: 466 KGAIGFIY 473 G+ G++ Sbjct: 465 NGSYGYVM 472 >gi|260574616|ref|ZP_05842619.1| type II and III secretion system protein [Rhodobacter sp. SW2] gi|259023033|gb|EEW26326.1| type II and III secretion system protein [Rhodobacter sp. SW2] Length = 470 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 138/492 (28%), Positives = 240/492 (48%), Gaps = 44/492 (8%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 R F+T L + L P+ ++ +E + + + LN+ ++++ Sbjct: 2 FMRNFWT---AGLLGLALATTALSPVAAQ-----SLRVMEGSASRALEVPLNRAVVVESD 53 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V ++ +++P AD+ S +++Y+ GK G+ + L+G DG+ + N+++ + D+A Sbjct: 54 VPFAELSIANPGIADISTLSDKSIYVLGKAPGRTTLTLLGPDGRLISNVEVQVSPDVAEF 113 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + LR+ + I V +D +VL G V + RA++L+E + + ++ Sbjct: 114 KERLRQILPGELIEVRTANDGIVLSGTVSSTAKLDRALDLAERY------------APER 161 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---------------- 227 V NL+++ G QV LKV AE++R + K + +I GS+ G + Sbjct: 162 VSNLMSVGGTQQVMLKVRFAEMQRSVAKNLSASLAINGSTGGGNVGVNAGSGQFTAGGTR 221 Query: 228 -KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 FA + G ++ F +L ALE +RTLAEP LTA+SGQ A Sbjct: 222 DGVFAGTSQSGADNSEGVATIGFSAGSLQFAVLLEALESKGVVRTLAEPNLTALSGQEAK 281 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-- 344 F +GG++ V+ +G+ SV +GV ++FTP V+ I L I VS V Sbjct: 282 FLAGGEYPIP-VADGSGSISVEYKPFGVEMNFTPVVVDGDIINLTINAAVSSIDSTVTVQ 340 Query: 345 --AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + +++ R+ TTVE+ G + +AGLL+DD + L +P L IPILGALFR++ Sbjct: 341 NAGFTLNAFKRRETSTTVEMRDGESFAIAGLLQDDFRDLNGQVPWLGDIPILGALFRSAE 400 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 + R ++E+ I TP LV P L+ P D + + + F F + + G EV Sbjct: 401 YQRAQSELVIIVTPHLVTPTRGEALALPTDRIRIPTERELFLFGKTSGARG--ATGEVAR 458 Query: 463 QNYKGAIGFIYK 474 Q++ G+ G++ + Sbjct: 459 QDFSGSYGYVME 470 >gi|150398541|ref|YP_001329008.1| type II and III secretion system protein [Sinorhizobium medicae WSM419] gi|150030056|gb|ABR62173.1| type II and III secretion system protein [Sinorhizobium medicae WSM419] Length = 524 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 210/507 (41%), Positives = 308/507 (60%), Gaps = 37/507 (7%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 + + S +L S ++ P + A+++V+ I + G K I++GLNK +++ + Sbjct: 20 RFRASLAAGFSFWLIFSGMALPTAAPAEAASSSVVRIVNSGPGARKTINLGLNKAVVVDL 79 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 P D D+LV+DP+ AD + + R +YLFGK+VGQ N+ + G G+++++L++ +ERD+A Sbjct: 80 PSDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVAG 139 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ------- 175 LE LRRFI D++I+VE++SD VVL G VRT DS RAV+L+ FL Sbjct: 140 LESNLRRFIPDADIKVEIISDNVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQG 199 Query: 176 --------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + S +++NLL I G+DQVTLKVT+AEV R +LKQ+GF ++ SG S Sbjct: 200 NNGDADIFAEDRQSSQIVNLLTIEGDDQVTLKVTVAEVSRQVLKQLGFNGRVSDGESGIS 259 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 A+ G + G + +KG + + + ++A+E+A +RTLAEP+LTAISGQ A F Sbjct: 260 FRNPANLG-DMIGIGTNALIKGSIGGTTISSYINAMEQAGVMRTLAEPSLTAISGQEAKF 318 Query: 288 TSGGQH---------LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GG+ +T V +YG+ L+F P VL PGRI L+I+T+VSE Sbjct: 319 YVGGEFRLAGVQEVSTDDDSGETTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVSE 378 Query: 339 PV------IGVNAGDMPS-----YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 P G ++P R R+A T+VELPSGG+IV+AGL++D+I+Q G+P Sbjct: 379 PTYEGSVVTGNGTVNIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLPA 438 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 SKIPILG LFR+ F R ETE+ I ATP+LV+PVA +SRPDD+++ +D ++FF R Sbjct: 439 ASKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISRPDDNFNPANDLESFFLGR 498 Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474 VN+IYG EA G+ Y G +GFIYK Sbjct: 499 VNRIYGRAEAQPPAGR-YHGNVGFIYK 524 >gi|114764946|ref|ZP_01444119.1| bacterial type II/III secretion system protein [Pelagibaca bermudensis HTCC2601] gi|114542658|gb|EAU45682.1| bacterial type II/III secretion system protein [Roseovarius sp. HTCC2601] Length = 471 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 132/455 (29%), Positives = 227/455 (49%), Gaps = 32/455 (7%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 ++ V G +S+ +N+ ++++ ++ +++P AD+ S RT+Y+ GK G Sbjct: 29 SLRVVRTGTESVLSVPMNRAVVVESDRPFAELSIANPAIADISSLSDRTIYVLGKTPGTT 88 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 + ++ +G+ + N+D+ + D+ + LR+ + + I V +D +VL G + + Q Sbjct: 89 TLTILDANGRLITNVDVRVAADVTEFKERLRQILPNEPIEVRTANDGIVLSGTISSAQKL 148 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 QRA++L+E + + ++V NL+ + G QV LKV AE++R + K + Sbjct: 149 QRALDLAERY------------APERVSNLMTVGGVQQVMLKVRFAEMQRSVAKNLRSSL 196 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGD------------FSVKGVLDRFSFETVLHALER 265 S+TG+ G ++ A G + + G+ F + +L ALE Sbjct: 197 SVTGTLFGNDETTLASETGTLIGQSGNTSINVNDDAEGAFLLGFNSGALQVGILLEALES 256 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 RTLAEP LTA+SGQ A F +GG++ VS G T V+ +GV L+F P V+ Sbjct: 257 KGISRTLAEPNLTALSGQEARFLAGGEYPVP-VSQDDGTTIVSYKPFGVELNFVPRVVDG 315 Query: 326 GRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 I L ++ VS + ++R R+ TTVE+ G + +AGLL+DD + L Sbjct: 316 DLINLELEAAVSSIDSSNGITTGEITIDAFRRRETSTTVEMRDGESFAIAGLLQDDFRDL 375 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P L IP+LGALFR++ + RE++E+ I TP LV P L+ P D + Sbjct: 376 NGQVPWLGDIPVLGALFRSAEYEREQSELVIIVTPHLVTPTRGEVLALPTDRVRPPTEKD 435 Query: 442 AFFFNRV---NKIYGPKEASEVEGQNYKGAIGFIY 473 F + R + A+EV Q++ G+ G++ Sbjct: 436 LFLYGRTASDTRRPQSGGAAEVAKQDFTGSYGYVM 470 >gi|222147182|ref|YP_002548139.1| component of type IV pilus [Agrobacterium vitis S4] gi|221734172|gb|ACM35135.1| component of type IV pilus [Agrobacterium vitis S4] Length = 525 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 213/522 (40%), Positives = 299/522 (57%), Gaps = 51/522 (9%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLP----------PIKEANAAVINISDVEIGKGKKI 50 MR F MM S S++ LP + +++ I+ G + + Sbjct: 7 MRLSSARLFRMMITGSLSLGLSISGLPGENMLVWRADALAAGAQSLVRIAQTGPGVRRDL 66 Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 +GLNK I++ +P D D+LV+DP AD V + R +YLFGK VGQ N+ + G DG++++ Sbjct: 67 KLGLNKAIVVDLPEDAHDILVADPELADAVTRTSRRIYLFGKKVGQTNIFIFGADGREIV 126 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 +LD+ IERDI L+ L RFI +SNI+VE++SD VVL G VRT QDS RAV L++ FL Sbjct: 127 SLDLQIERDIEGLQTNLSRFIPESNIKVEIISDNVVLSGTVRTPQDSSRAVSLAKAFLQG 186 Query: 171 SGRNQYANSSSKK------------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 +++ ++N+L I GEDQVTLKVT+AEV R +LKQ Sbjct: 187 GEATTRGETATSNSSGDGAVAIYAEDRQTSQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQ 246 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 +G S T +SG S + ++ G GG ++ F ++A+E+A +RTL Sbjct: 247 LGVSASATDGTSGISYANPSNLGNSVD-VGGTATISKTFGSFGISAYVNAMEQAGVMRTL 305 Query: 273 AEPTLTAISGQSASFTSGGQH---------LYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 AEP+LTAISG+ A F GG++ T T + + +T DYG+ L+F P VL Sbjct: 306 AEPSLTAISGEQAKFYVGGEYRLAAGQEISTDSTTGQKTVSRTTSTVDYGIQLNFRPVVL 365 Query: 324 SPGRIGLRIQTEVSEPV-----------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 SPGRI L I+T VSEP + S R R+A TTVELPSGG+IV+AG Sbjct: 366 SPGRISLAIETNVSEPTYEGSVVEGNSDSSIPGSTYLSIRKREASTTVELPSGGSIVIAG 425 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L++D+++Q G+P +SKIPI G LFR+ F R ETE+ I ATP+LV+PV L+RPDD Sbjct: 426 LVQDNVRQAMSGLPGISKIPIFGTLFRSKDFVRNETELVIIATPYLVRPVTRNALARPDD 485 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +++ D +F NRVNK+YG KEA+ Y G +G+IYK Sbjct: 486 NFNPAGDGAMYFLNRVNKVYGRKEAT--ANGAYHGTVGYIYK 525 >gi|163745846|ref|ZP_02153205.1| bacterial type II/III secretion system protein [Oceanibulbus indolifex HEL-45] gi|161380591|gb|EDQ05001.1| bacterial type II/III secretion system protein [Oceanibulbus indolifex HEL-45] Length = 478 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 127/488 (26%), Positives = 222/488 (45%), Gaps = 35/488 (7%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 + L L ++A + V+ G + + +N+ ++++ + Sbjct: 3 IDRFLKAALLGLTLGAMPLALTLPSSAGADTLRVVKRGTNSSLDVPMNRAVVVESDIPFA 62 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 ++ +++P AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ + L Sbjct: 63 ELSIANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAGGQLITNVDVRVAADVSEFKERL 122 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 R+ + I V +D +VL G+V + Q QRA++L+E + + ++V NL Sbjct: 123 RQILPGEKIEVRTANDGIVLSGIVSSTQRLQRALDLAERY------------APERVSNL 170 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------GSSSGPSKSFAADFGG 236 +++ G QV +KV AE++R++ K +G +I S+ S A+ GG Sbjct: 171 MSVGGIQQVMMKVRFAEMQRNVSKSLGSSLAINGAIGGTGINGGTGSTNSSGGVASSLGG 230 Query: 237 KFVS---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 S G +L ALE +R LAEP L A+SGQ A F +GG++ Sbjct: 231 TIPSSNQNAGAVLFGFNAGSTQVGILLEALEEKGVVRFLAEPNLVALSGQEAKFLAGGEY 290 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDM 348 V+ + +V +GV L F P V+ I L + VS N ++ Sbjct: 291 PVP-VAQTGDTIAVEFKPFGVELAFIPRVVDKDIINLEMNAAVSAIDGSNSIALGNGIEI 349 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ R+ TTVE+ G + +AGLL DD +P + +P+LGALFR++ + R +T Sbjct: 350 SAFTRRETSTTVEMRDGESFAIAGLLTDDFTDSTRQLPWIGDVPVLGALFRSADYQRSQT 409 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV---NKIYGPKEASEVEGQNY 465 E+ I T LV P L P D + F R + A EV Q++ Sbjct: 410 ELVIIVTAHLVTPTRSEALVLPTDRIKPPSEKDLFLHGRTADGTRTPTRGAAGEVAKQDF 469 Query: 466 KGAIGFIY 473 +G+ G++ Sbjct: 470 RGSYGYVL 477 >gi|260431084|ref|ZP_05785055.1| bacterial type II/III secretion system protein [Silicibacter lacuscaerulensis ITI-1157] gi|260414912|gb|EEX08171.1| bacterial type II/III secretion system protein [Silicibacter lacuscaerulensis ITI-1157] Length = 452 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 130/466 (27%), Positives = 211/466 (45%), Gaps = 31/466 (6%) Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83 A A + + G + + + +N+ I+++ ++ +++ AD+ S Sbjct: 1 MSPAGYDAARAENLRVVKK--GTAETLDVPMNRAIVVESETPFAELSIANAGIADISSLS 58 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 RT+Y+ GK G + L G + N+ + + D+ + LR+ + + I V +D Sbjct: 59 DRTIYVLGKAPGLTTLTLFDGAGNLIANVRVRVAPDVTEFKERLRQILPNERIEVRTAND 118 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 +VL G V + RA+EL+E + + ++V NL+N+ G QV LKV A Sbjct: 119 GIVLSGTVSSSAKLARALELAERY------------APERVSNLMNVGGVQQVMLKVRFA 166 Query: 204 EVRRDILKQIGFQHSITGS-------SSGPSKSFAADFGGKFV---SEGGDFSVKGVLDR 253 E+ R + K + GS S S S + G S G Sbjct: 167 EMNRSVAKSLSASLGFGGSDVTGGINSLNNSFSLSNALGNNIPVSQSNTGAILFGFGAGS 226 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +L ALE R+LAEP L+A+SGQ A+F +GG+ V G ++ +G Sbjct: 227 TQVRLLLEALEAKGLARSLAEPNLSALSGQEATFLAGGEVPIP-VPQDDGVVAIEYKSFG 285 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIV 369 V + F P V+ I L + VS +N +PS+ R+ TTVEL G + Sbjct: 286 VEIDFIPRVVDGDLINLEMAASVSAIDTSSDFTINGDSVPSFVTRQTSTTVELRDGESFA 345 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 +AGL++DD L IP L +P+LGALFR++ + RE++E+ I T LV P L+ Sbjct: 346 IAGLIQDDFTDLSNQIPWLGDVPVLGALFRSAEYQREQSELVIIITAHLVSPTRGEALAL 405 Query: 430 PDDHYSVEDDAKAFFFNRVNKIY--GPKEASEVEGQNYKGAIGFIY 473 P D + F RV++ G ASEV Q++ + G++ Sbjct: 406 PTDRVKPPSEFDLFLNGRVSRTERAGNGAASEVANQDFGSSYGYVL 451 >gi|254487886|ref|ZP_05101091.1| bacterial type II/III secretion system protein [Roseobacter sp. GAI101] gi|214044755|gb|EEB85393.1| bacterial type II/III secretion system protein [Roseobacter sp. GAI101] Length = 486 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 130/489 (26%), Positives = 223/489 (45%), Gaps = 36/489 (7%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++ LF L + V G + + + +N+ ++++ + Sbjct: 10 IDRFITAALFGLTICAMPLALAAPTAVQADTLRVVNRGTNRALEVPMNRAVVVESDIPFA 69 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 ++ +++P AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + DI+ + L Sbjct: 70 ELSIANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAAGQLITNVDVRVASDISEFKERL 129 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 R+ + I V +D +VL G+V + Q QRA++L+E + + ++V NL Sbjct: 130 RQILPGEKIEVRTANDGIVLSGIVSSTQGLQRALDLAERY------------APERVSNL 177 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQ----------IGFQHSITGSSSGPSKSFA-----A 232 +++ G QV LKV AE++R + K +G +I G ++ + S A Sbjct: 178 MSVGGIQQVMLKVRFAEMQRSVSKSLSASLALNGLLGSDLAINGGTNTTNGSTAIANSLN 237 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 S G +L ALE+ A+R LAEP L A+SGQ A+F +GG+ Sbjct: 238 GSTPTTNSNAGAVLFGFNAGSTQVGLLLEALEQKGAVRFLAEPNLVALSGQEATFLAGGE 297 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGD 347 + S SV +GV + F P V+ I L ++ VS N D Sbjct: 298 YPVPVSQSGD-RISVEYKPFGVEMSFIPRVVDKNLINLELKAAVSAIDPSNSVSLGNGFD 356 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + ++ R+ TTVE+ G + +AGLL DD +P + +P+LGALFR++ + R + Sbjct: 357 ISAFTRRETSTTVEMRDGESFAIAGLLTDDFTDTSRQLPWIGDVPVLGALFRSANYQRSQ 416 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN---KIYGPKEASEVEGQN 464 TE+ I T LV P L+ P D + + F R + K A EV Q+ Sbjct: 417 TELVIIITAHLVTPTRGDALALPTDRIKPPTENELFLSGRTSSGGKAPTRGAAGEVAKQD 476 Query: 465 YKGAIGFIY 473 + G+ G++ Sbjct: 477 FSGSYGYVL 485 >gi|254510970|ref|ZP_05123037.1| bacterial type II/III secretion system protein [Rhodobacteraceae bacterium KLH11] gi|221534681|gb|EEE37669.1| bacterial type II/III secretion system protein [Rhodobacteraceae bacterium KLH11] Length = 476 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 129/483 (26%), Positives = 221/483 (45%), Gaps = 33/483 (6%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T + +S L + V+ + A N+ V+ G + + + +N+ I+++ Sbjct: 10 TIRSWISATLLGLSLVVSPIGDAAWAQ----NLRVVKKGTAESLDVPVNRAIVVESEQPF 65 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 D+ +++ AD+ S RT+Y+ G+ G + + G + N+ + + D+ + Sbjct: 66 ADISIANAGIADISTLSDRTIYVLGRAPGITTLTMFDGAGNLITNVRVRVSPDVTEFKER 125 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 LR+ + + I V +D +VL G V + RA+EL+E + + ++V N Sbjct: 126 LRQILPNEQIEVRTANDGIVLSGTVSSSARLARALELAERY------------APERVSN 173 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----------SSSGPSKSFAADFGG 236 LLN+ G QV LKV AE+ R + K + G ++ G + A+ Sbjct: 174 LLNVGGVQQVMLKVRFAEMNRSVAKNLSASLGFGGGDATGGFNSLNNQGALNNALANNIP 233 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G +L ALE +R+LAEP L+A+SGQ A F +GG+ Sbjct: 234 FVQTNSGAVLFGFGAGSTQVRLLLEALETKGLVRSLAEPNLSALSGQEAEFLAGGEVPIP 293 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYR 352 V G ++ +GV L F P V+ I L + VS +N +PS+ Sbjct: 294 -VPQGDGVVAIEYRQFGVQLLFVPRVVDGNLINLELGASVSSIDQSSDFTINGDSVPSFI 352 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ TT+EL G + +AGL++DD L +P L +P+LGALFR++++ RE++E+ I Sbjct: 353 TRQTRTTIELRDGESFAIAGLIQDDFTDLNTQVPWLGDVPVLGALFRSAQYQREQSELII 412 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY--GPKEASEVEGQNYKGAIG 470 T LV P L+ P D + F +V + G ASEV Q++ + G Sbjct: 413 IITAHLVSPTRGEALALPTDRVKPPSEFDLFVNGKVARTERAGNGAASEVAKQDFGTSYG 472 Query: 471 FIY 473 ++ Sbjct: 473 YVL 475 >gi|92116013|ref|YP_575742.1| type II and III secretion system protein [Nitrobacter hamburgensis X14] gi|91798907|gb|ABE61282.1| type II and III secretion system protein [Nitrobacter hamburgensis X14] Length = 486 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 172/486 (35%), Positives = 269/486 (55%), Gaps = 28/486 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 LQ +S ++ L P+ ++ V + + +S+G+ K +++ +P Sbjct: 10 LQAIVARSLSFAAIAAFTLNPALTPVFASDYRVPAATAGAKMHAQSLSLGIGKSVVVDLP 69 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 DV+DVLV+DP A+ VV S + Y+ G VGQ N+I G+Q+ DI + RD+ L Sbjct: 70 RDVKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDGSGQQISAYDIAVTRDLNGL 129 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 L++ + +++I+++ + D VVL G ++ +SQ+A +L+ + K Sbjct: 130 RAALKQILPNADIKIDGLGDGVVLSGWAQSPVESQQAADLAARLAGG----------ADK 179 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------- 235 V+N + + G DQV LKV +AEV+RDI+KQ+G S S +F Sbjct: 180 VVNSIAVRGRDQVMLKVVVAEVQRDIIKQLGVDLSANLSYGTAVVNFNNSNPFLATGSAL 239 Query: 236 --GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G V G S+ + + + L A+E + IRTLAEP+LTAISG+SA+F +GG+ Sbjct: 240 VPGNSVVGGFGKSIINGVTMPTVQATLRAMENSGVIRTLAEPSLTAISGESANFLAGGEF 299 Query: 294 LYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAG 346 + S T +VT +G+ L+FTP VLS GRI LR+ TE SE I ++ Sbjct: 300 PIPSGVSCTNGTCTPTVTFKKFGISLNFTPVVLSEGRISLRVATEASEVNNENAIQISGT 359 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +PS + R+ADTT+E+PSGG++V+AGL+K +Q G+P +S+IP+LG LFR+ + Sbjct: 360 AVPSIKTRRADTTLEIPSGGSMVMAGLIKQQTKQSISGMPGVSQIPVLGTLFRSRDYVNN 419 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 TE+ I TP++V+ VA +DLSRPDD ++ D +A +N+IYG +E Q Y+ Sbjct: 420 NTELMILVTPYVVRAVAQKDLSRPDDGFADASDPQADLLGSINRIYGVPGRAEPARQ-YR 478 Query: 467 GAIGFI 472 G GFI Sbjct: 479 GTYGFI 484 >gi|85859139|ref|YP_461341.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB] gi|85722230|gb|ABC77173.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB] Length = 503 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 134/509 (26%), Positives = 229/509 (44%), Gaps = 49/509 (9%) Query: 5 QRTFFTMMSIFLFSSNPSVAKL-PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 R + F+ S+A AA + V + +K+++ + K I++ P Sbjct: 1 MRPCPGLKVHFVACCLISIALCFLIALPCVAAGPDRVVVNTSRPQKLTLTVGKSTIVECP 60 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 +++ V ++ P AD++ SPR +YL GK G N+ L D M +D+ + D+ L Sbjct: 61 QNLKRVSIAAPDYADILTLSPRQIYLTGKMAGNTNLTLWRSDNSVMSVIDVEVLPDVVGL 120 Query: 124 EMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + + + D +IRV D + L G V + + + + L+ ++ + + Sbjct: 121 KEKIHSMMPDEKDIRVTATPDAITLSGTVSSAANMNQVMSLANSYAPK------GKDKTG 174 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228 V N L + G QV L+V ++E+ R ++K++G + Sbjct: 175 GVNNFLEVGGVHQVMLEVRVSEMSRSLIKKLGINWNYLSEGGNTFGMSMLDNLTYTVSPS 234 Query: 229 ------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 S A G VS + + ++ + A++ ++ LAEPT Sbjct: 235 DANIQPMTHLSASEGAVSVGTLVSSSVGLAFRFFGGGATWTLFIDAMKDQGLLKVLAEPT 294 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L +SG++ASF +GG+ ++ +GV L+FTPTVLS +I +++ EV Sbjct: 295 LLTLSGKTASFLAGGEFPIPVPQEEN--ITIEYKPFGVGLNFTPTVLSNKKISMQVSPEV 352 Query: 337 SEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 S+ + V +PS R+ TTVEL G + +AGLLKDDI+Q+ +PLL IP Sbjct: 353 SDLDYTNAVAVGGYAVPSITTRRVATTVELADGQSFAIAGLLKDDIRQIVRKVPLLGDIP 412 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +LG+LFR+S+F + ETE+ I TP LVKP+ M + P D Y +D + + + Sbjct: 413 VLGSLFRSSQFRKNETELVIIVTPRLVKPLDMTKQTLPTDQYVEPNDFEFYLLGSLEGKG 472 Query: 453 GPKEASEVE---------GQNYKGAIGFI 472 A+ +G G+I Sbjct: 473 ENDSATPTPVSSALPGDKTGGLEGDFGYI 501 >gi|325291659|ref|YP_004277523.1| component of type IV pilus [Agrobacterium sp. H13-3] gi|325059512|gb|ADY63203.1| component of type IV pilus [Agrobacterium sp. H13-3] Length = 527 Score = 354 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 207/494 (41%), Positives = 302/494 (61%), Gaps = 41/494 (8%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 +P+ ++ + +A+++ I++ G K++ +GLNK +++ +P D D+LV+DP+ AD Sbjct: 36 SPAFLRISEAEAQSASIVRITESGSGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADA 95 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + + +YLFGK VGQ N+ + G G+++++LD+ +ERDI+ LE +RRFI +S+I+VE Sbjct: 96 VTRTSKRIYLFGKTVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVE 155 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-----------------YANSSSK 182 +VSD +VL G VRT QDS RAV+L+E FL N + Sbjct: 156 IVSDNIVLTGSVRTPQDSARAVQLAEAFLKGGEATTRNISLTGGNNGGDAAIFAENRQTS 215 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA--ADFGGKFVS 240 +++N+L I GEDQVTLKVT+AEV R +LKQ+GF SI+ S+S F+ ++ G Sbjct: 216 QIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSISSSTSNNGFEFSNPSNLGNAISG 275 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---- 296 S +F + L+A+E+A +RTLAEP+LTAISG+ A F GG Sbjct: 276 ASRIASGAIGSGSLNFASYLNAMEQAGVVRTLAEPSLTAISGEQAKFYVGGDFRLPAEQE 335 Query: 297 -----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------- 344 T + T DYG+ L+F P VLSPGRI L+I+T VSEP N Sbjct: 336 VTIDKDTGQPTITRTTNTVDYGITLNFRPVVLSPGRISLKIETNVSEPTYEGNVVTGNAG 395 Query: 345 ----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 S R R+ TTVELPSGG+IV+AGL++D+I+Q G+P +SK+PI G LFR+ Sbjct: 396 RTIPGSTYMSIRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGISKVPIFGTLFRS 455 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 F R ETE+ I ATP+LV+PVA ++RPDD+++ E+DA +F NRVNK+YG K+ V Sbjct: 456 KDFIRNETELVIIATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNKVYGRKDQ--V 513 Query: 461 EGQNYKGAIGFIYK 474 + Y+G++GFIYK Sbjct: 514 QAAPYQGSVGFIYK 527 >gi|153008059|ref|YP_001369274.1| type II and III secretion system protein [Ochrobactrum anthropi ATCC 49188] gi|151559947|gb|ABS13445.1| type II and III secretion system protein [Ochrobactrum anthropi ATCC 49188] Length = 507 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 192/509 (37%), Positives = 285/509 (55%), Gaps = 37/509 (7%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKE-ANAAVINISDVEIGKGKKISIGLNKVII 59 MR +R + L +S + LP A AA + + + I +GLNK ++ Sbjct: 1 MRKTKRVRPYSAKVALLTSALAAFSLPLTDMSAMAAAGVVKVGSQQRSQTIKLGLNKSVV 60 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L +P D DVLVS+PT AD V + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IERD Sbjct: 61 LDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGPNGEQVASIDVEIERD 120 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA-- 177 ++ + L+R I S+IRVE+++D VVL G V+T QDS +A +L+ F+S Sbjct: 121 VSGISSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQFT 180 Query: 178 -------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 N + ++N+L I GEDQVTLKVT+AEV R ++KQ+G + Sbjct: 181 TTASAPTDGGGVAINNPDRNRRASAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVNMA 240 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 +G S+G S ++ + + G+ +F L A+E A ++TLAEPTLT Sbjct: 241 GSGVSNGISYGGISESIAGAIGNNLSDTGFGLATS-NFSAYLRAMESAGVMKTLAEPTLT 299 Query: 279 AISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 AISG+ A+F GG++ + +YG+ L F PTVL PGRI L+I+T Sbjct: 300 AISGEKAAFNVGGEYNVINSVKYDDDGKRTNELAKINYGIGLEFMPTVLGPGRISLKIRT 359 Query: 335 EVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 VSEP + S R R ADTTVELPSGG++++ GL++D+++Q G Sbjct: 360 SVSEPTTEGAGTTNKMDGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGF 419 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P L+KIP+LGALFR+ F R E+E+ + TP+L +PVA + L+RPDD+ + D + Sbjct: 420 PGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDNLNPASDGAGYIL 479 Query: 446 NRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +VN++YG E G+ Y G +G+IYK Sbjct: 480 GKVNRVYGTMETKLPPGR-YNGVVGYIYK 507 >gi|83943939|ref|ZP_00956396.1| bacterial type II/III secretion system protein [Sulfitobacter sp. EE-36] gi|83954512|ref|ZP_00963223.1| bacterial type II/III secretion system protein [Sulfitobacter sp. NAS-14.1] gi|83840796|gb|EAP79967.1| bacterial type II/III secretion system protein [Sulfitobacter sp. NAS-14.1] gi|83845186|gb|EAP83066.1| bacterial type II/III secretion system protein [Sulfitobacter sp. EE-36] Length = 479 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 123/486 (25%), Positives = 224/486 (46%), Gaps = 36/486 (7%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 + L +A + V+ G + + + +N+ ++++ + ++ Sbjct: 6 FIKAALLGLTIGAMPFALTAPIDAQANTLRVVKKGTNRVLEVPMNRAVVVESDIPFAELS 65 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 +++P AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ + LR+ Sbjct: 66 IANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAAGQLITNVDVRVAADVSEFKERLRQI 125 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + I V +D +VL G+V + Q QRA++L+E + + ++V NL+++ Sbjct: 126 LPGEKIEVRTANDGIVLSGIVSSTQRLQRALDLAERY------------APERVSNLMSV 173 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFG 235 G QV +KV AE+ R + K + ++ G +++G + Sbjct: 174 GGIQQVMMKVRFAEMSRSVSKSLSASLALNGLVGNDLAINGGTNTTNTAGAIANSLGGTT 233 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 S G +L ALE+ A+R LAEP L A+SGQ A+F +GG++ Sbjct: 234 PASNSNAGAVLFGFNAGSTQVGLLLEALEQKGAVRFLAEPNLVALSGQEATFLAGGEYPV 293 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPS 350 V+ + SV +GV + F P V+ I L ++ VS N D+ + Sbjct: 294 P-VAQTGDQISVQYKPFGVEMSFIPRVVDKDLINLELKAAVSAIDASNSVSLGNGFDISA 352 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R+ TTVE+ G + +AGLL DD +P + +P+LGALFR++ + R ++E+ Sbjct: 353 FTRRETSTTVEMRDGESFAIAGLLTDDFTDNSSQLPWIGDVPVLGALFRSANYQRSQSEL 412 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK---EASEVEGQNYKG 467 I T LV P L+ P D +++ F R +K A EV Q++ G Sbjct: 413 VIIITAHLVTPTRGEALALPTDRIKPPTESELFLSGRTSKGSTAPTKGAAGEVAKQDFSG 472 Query: 468 AIGFIY 473 + G++ Sbjct: 473 SYGYVL 478 >gi|254440636|ref|ZP_05054129.1| Putative phospholipid-binding domain family [Octadecabacter antarcticus 307] gi|198250714|gb|EDY75029.1| Putative phospholipid-binding domain family [Octadecabacter antarcticus 307] Length = 474 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 135/489 (27%), Positives = 223/489 (45%), Gaps = 39/489 (7%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T+ + L LP +A + +++ +N+ ++++ V Sbjct: 2 TYDRFLKATLTGLAIMFTNLPVQLQAETLRVMRG----APSSALNVPMNRAVVVESDVPF 57 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 ++ +++P+ AD+ S RT+Y+ GK G+ + L+G DG+ + N+++ + DIA + Sbjct: 58 TELSIANPSIADISSLSDRTIYVLGKEPGRTTLTLLGGDGRLITNVEVHVTPDIAEFKER 117 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L + + NI V +D +VL G V +I RA+EL+ + + +V N Sbjct: 118 LEQILPGENIEVRTANDGIVLSGTVSSIARLDRALELANRY------------APDRVSN 165 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------------SSGPSKSF 230 L+++ G QV L+V AE++R + K + ++ GS + S Sbjct: 166 LMSVGGTQQVMLRVRFAEMQRSVSKSLSSSLALGGSTLGGDLGLALGTGATVGNTGRLST 225 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + G F +L ALE +RTLAEP LTA+SGQ ASF +G Sbjct: 226 LSGATPANNDNAGAFLFGFNAGGVEVGILLEALENRGVVRTLAEPNLTALSGQEASFLAG 285 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAG 346 G++ + T V +G+ L FTP V+ I L + VS N Sbjct: 286 GEYPVPISQDGSAIT-VEYKPFGISLSFTPRVIDGDIINLELHASVSSLDPTNGFSQNGF 344 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + ++R R+ TTVE+ G + +AGLL DD L +P IP+LGALFR++ ++R+ Sbjct: 345 SIDAFRTRETSTTVEMRDGESFAIAGLLSDDFVDLSGQVPWAGDIPVLGALFRSAEYSRQ 404 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV--NKIYGPKEASEVEGQN 464 +TE+ I TP LV P L+ P D + F F RV A EV Q+ Sbjct: 405 QTELVIIVTPHLVTPTRGDALALPTDRVRPPTERDLFLFGRVTAEDAPQSGGAGEVARQD 464 Query: 465 YKGAIGFIY 473 + G+ G++ Sbjct: 465 FSGSYGYVL 473 >gi|110679396|ref|YP_682403.1| type II/III secretion system protein, putative [Roseobacter denitrificans OCh 114] gi|109455512|gb|ABG31717.1| type II/III secretion system protein, putative [Roseobacter denitrificans OCh 114] Length = 463 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 123/471 (26%), Positives = 218/471 (46%), Gaps = 22/471 (4%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 ++ L SV+ + +A + + + +++ N+ ++++ + ++ Sbjct: 6 ILKAALLGLAISVSPIAFTAPLSAQAEALRIIARETSETLNVSQNRAVVVESEIPFAELS 65 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 +++P AD+ S R++Y+ GK G + L+ G+ + N+++ + D+ + LR+ Sbjct: 66 IANPGIADISSLSDRSIYVLGKVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKERLRQI 125 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + I V +D +VL G V + Q +A+EL+ + + +V NL+ + Sbjct: 126 LPGEAIEVRTANDGIVLSGQVSSSQRLSKALELAARY------------APDRVSNLMTV 173 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSFAADFGGKFVSEGGDFSVK 248 G QV LKV AE+ R + KQ+ I GS +G + S G Sbjct: 174 GGVQQVMLKVRFAEMSRGVSKQLQSSLRIGGSDAQAGIGRGIGGIPNLAADSAQGAVFFD 233 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 L + +L ALE A+RTLAEP L ++SGQ A+F +GG++ S SV Sbjct: 234 FGLGSTQVQLLLEALETKGAVRTLAEPNLVSLSGQEANFLAGGEYPVPV--QSEDGISVD 291 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELP 363 +G+ L+F P V+ I L++ S + ++ R+A TTVE+ Sbjct: 292 FKPFGIELNFVPRVVDGDLINLQLSAATSSIDPSNGISVGDGFTVDAFIRREASTTVEMR 351 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G + +AGLL+D+ +P +S +PILGALFR++ + R +TE+ I T LV P Sbjct: 352 DGESFAIAGLLEDNFNDNITQVPWISDVPILGALFRSTDYMRNQTELVIIITAHLVTPTR 411 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNR-VNKIYGPKEASEVEGQNYKGAIGFIY 473 L+ P D + F R + + A EV Q++ G+ G++ Sbjct: 412 GEALALPTDRIRPPSEKDLFLNGRTIETLNARGSAGEVAKQDFSGSYGYVM 462 >gi|239833237|ref|ZP_04681566.1| type II and III secretion system protein [Ochrobactrum intermedium LMG 3301] gi|239825504|gb|EEQ97072.1| type II and III secretion system protein [Ochrobactrum intermedium LMG 3301] Length = 507 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 192/509 (37%), Positives = 281/509 (55%), Gaps = 37/509 (7%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKE-ANAAVINISDVEIGKGKKISIGLNKVII 59 MR R I L + + LP A AA + + + I +GLNK ++ Sbjct: 1 MRKTNRVRPYSARIALLAGALATVSLPLADMTAMAAAGIVKVGSQQRSQTIKLGLNKSVV 60 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L +P D DVLVS+PT AD V + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IERD Sbjct: 61 LDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGQNGEQVASIDVEIERD 120 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA-- 177 ++ L L+R I S+IRVE+++D VVL G V+T QDS +A +L+ F+S Sbjct: 121 VSGLSSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQYS 180 Query: 178 -------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 ++N+L I GEDQVTLKVT+AEV R ++KQ+G + Sbjct: 181 TTASAPTDGGGVAINNPDWGRRQSAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVNMT 240 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 +G S+G S ++ + + G+ +F L A+E A ++TLAEPTLT Sbjct: 241 GSGVSNGISYGGISENIAGAIGNNLSDTGFGLATS-NFSAYLRAMESAGVMKTLAEPTLT 299 Query: 279 AISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 AISG+ A+F GG++ + +YG+ L F PTVL PGRI L+I+T Sbjct: 300 AISGEKAAFNVGGEYNVINSVTYDDDGKRTNQLAKINYGIGLEFMPTVLGPGRISLKIRT 359 Query: 335 EVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 VSEP + S R R ADTTVELPSGG++++ GL++D+++Q G Sbjct: 360 SVSEPTTEGAGTTNKMEGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGF 419 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P L+KIP+LGALFR+ F R E+E+ + TP+L +PVA + L+RPDD+ + D + Sbjct: 420 PGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDNLNPASDGAGYIL 479 Query: 446 NRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +VN++YG E G+ Y G +G+IYK Sbjct: 480 GKVNRVYGTMETKLPPGR-YNGVVGYIYK 507 >gi|254463467|ref|ZP_05076883.1| bacterial type II/III secretion system protein [Rhodobacterales bacterium HTCC2083] gi|206680056|gb|EDZ44543.1| bacterial type II/III secretion system protein [Rhodobacteraceae bacterium HTCC2083] Length = 474 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 137/492 (27%), Positives = 230/492 (46%), Gaps = 42/492 (8%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 + T+ + FL + A + P ++ G + I +N+ ++++ V Sbjct: 1 MKKLNTLRAAFLGCAVLFTASVAPAHADTLRIVRS-----GSSSTLPIPMNRAVVVESDV 55 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 ++ +++P+ AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ + Sbjct: 56 PFAELSIANPSIADISTLSDRTVYVLGKSPGLTTLTLLDDAGRLITNVDVRVSADVSEFK 115 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 LR+ + I V +D +VL G V + RA++L++ + + ++V Sbjct: 116 ERLRQILPGEKIEVRTANDGIVLSGTVSSAGKVDRAMDLAQRY------------APERV 163 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------- 236 NLL+++G QV LKV AE++R + K + ++ GS+ G + S Sbjct: 164 TNLLSVSGVQQVMLKVRFAEMQRSVSKSLSSSLALGGSALGGNLSVRGGTNTLASGAASS 223 Query: 237 --------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + G +L ALE +RTLAEP LTA+SGQ A F Sbjct: 224 AAIAGTAPANNANNGATLFGFNAGGLEVGILLEALESKGMVRTLAEPNLTALSGQEAKFL 283 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---- 344 +GG++ SSS + +GV L F P VL I L + EVS Sbjct: 284 AGGEYPIPVQSSSG--VQIQFKPFGVQLAFIPRVLDDKVINLELNAEVSSLDAANGIVSD 341 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 + +VR+ TTVE+ G + +AGLL+DD L +P L IP+LGALFR++ + Sbjct: 342 GFAISGLKVRRTSTTVEMRDGESFAIAGLLQDDFTDLSGQVPWLGDIPVLGALFRSADYK 401 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV---NKIYGPKEASEVE 461 RE++E+ I TP LV P L+ P D S + F F RV ++ A+EV Sbjct: 402 REQSELVIIVTPHLVTPTRGEALALPTDRISPPTEKDLFLFGRVTGDSRRPKKGAAAEVA 461 Query: 462 GQNYKGAIGFIY 473 Q++ G+ G++ Sbjct: 462 RQDFTGSYGYVM 473 >gi|149200847|ref|ZP_01877822.1| bacterial type II/III secretion system protein [Roseovarius sp. TM1035] gi|149145180|gb|EDM33206.1| bacterial type II/III secretion system protein [Roseovarius sp. TM1035] Length = 472 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 126/466 (27%), Positives = 213/466 (45%), Gaps = 35/466 (7%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 + A A I + +S+ +N+ ++++ ++ +++P AD S RT+ Sbjct: 21 APQPAQAESIRVVRNGTSSA--LSVAMNRAVVVESDSPFAELSIANPAIADFSTLSERTI 78 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 Y+ GK G+ + L GK + N+D+ + DI + L++ + I V +D +V+ Sbjct: 79 YVLGKTPGRTTLSLFDGLGKLITNIDVHVSTDIEEFKERLKQILPGEPIEVRSANDGIVI 138 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + QRA++L+E + + ++V NL++++G+ QV LKV AE++R Sbjct: 139 SGTVSSTSRMQRALDLAERY------------APERVSNLMSVSGKQQVMLKVRFAEMQR 186 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------------EGGDFSVKGVLD 252 + K + SI + F+ + Sbjct: 187 SVSKALSSSLSIDARGANSVGVIGGTNTTNTQGGVLGTLAGAIPGTNENNAAFAFGFDVG 246 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +L ALE +RTLAEP LTA+SGQ A F +GG+ V+ TS+ + Sbjct: 247 SVEVGILLEALETKGVVRTLAEPNLTALSGQEAKFLAGGEFPVP-VAQDNDTTSIEFKPF 305 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTI 368 GV L+F P V+ G I L + VS N +P++R R TTV L G + Sbjct: 306 GVELNFVPRVVDDGIINLEMAAAVSSIDTANSLVSNGFAIPAFRRRDTSTTVALRDGESF 365 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +AGLL+DD + +P L +P+LGALFR++ + R +TE+ I + LV P L+ Sbjct: 366 AIAGLLQDDFRDNAGQVPWLGDVPVLGALFRSADYQRSQTELVIIVSAHLVSPSRGEALA 425 Query: 429 RPDDHYSVEDDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAIGFIY 473 P D + + F RV + + EV Q++ G+ G++ Sbjct: 426 LPTDRVKLPSEKDLFLNGRVARGVSDKGPVGEVAKQDFTGSYGYVM 471 >gi|86137993|ref|ZP_01056569.1| bacterial type II/III secretion system protein [Roseobacter sp. MED193] gi|85825585|gb|EAQ45784.1| bacterial type II/III secretion system protein [Roseobacter sp. MED193] Length = 459 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 128/476 (26%), Positives = 226/476 (47%), Gaps = 32/476 (6%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M+ L + +P + AN + V+ G + + +N+ ++++ ++ + Sbjct: 1 MAAALTGLSLLSIAVPEMGLANGLRV----VKRGTSVTLDVPMNRAVVVESDDPFAELSI 56 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 ++P AD+ S RT+Y+ GK+ G + L+ GK + N+++ + D++ + LR+ + Sbjct: 57 ANPNIADISSLSDRTIYVLGKSPGLTTLTLLDASGKLITNVNVRVAADVSEFKERLRQIL 116 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 I V +D +VL G V + QRA++L+E + + ++V NL+++ Sbjct: 117 PGEQIEVRTANDGIVLSGNVSSAARLQRALDLAERY------------APERVSNLMSVG 164 Query: 192 GEDQVTLKVTIAEVRRDILKQI------GFQHSITGSSSGPSKSFAADFGGKFV----SE 241 G QV LKV AE++R + K + G Q+ +G G + Sbjct: 165 GVQQVMLKVRFAEMQRSVSKALHSSVALGSQNGNASGETGQWLFGNNGLGNTPIEVKDGI 224 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + + +L ALE+ +RTLAEP L+A+SGQ A F +GG++ Sbjct: 225 AGALAFQFGVGSLQVGLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIPVSQDG 284 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKAD 357 T V +G+ L+F P V+ I L ++ VS + N + ++ R+ Sbjct: 285 GTVT-VEFKPFGIELNFIPRVVDGDVINLELKAAVSAIDTSNTVTANGLSIAAFSRRETS 343 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTVEL G + +AGL++DD IP + +P+LGALFR++ + RE+TE+ I + Sbjct: 344 TTVELRDGESFAVAGLVQDDFLDNTSQIPWIGDVPVLGALFRSADYQREQTELVIIVSAH 403 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 LV P LS P D +++ F R ASEV Q++ G+ G++ Sbjct: 404 LVTPTRGEALSLPTDRIKPPSESELFLLGRTVHSQ-KGPASEVAKQDFNGSYGYVM 458 >gi|149915642|ref|ZP_01904168.1| bacterial type II/III secretion system protein [Roseobacter sp. AzwK-3b] gi|149810534|gb|EDM70377.1| bacterial type II/III secretion system protein [Roseobacter sp. AzwK-3b] Length = 467 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 127/479 (26%), Positives = 225/479 (46%), Gaps = 32/479 (6%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 + L + +A N+ V G + +++ +N+ ++++ V ++ Sbjct: 6 LFKAALLGLAVVFSGFVTELQAE----NLQVVRNGAARDLNVTMNRAVVVESDVPFAELS 61 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 +++P+ AD S RT+Y+ GK G+ + L+ G+ + N++I + D++ + L++ Sbjct: 62 IANPSIADFSTLSDRTIYVLGKAPGRTTLTLLDDSGRLITNVEIHVSTDVSEFKERLQQI 121 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + + I V +D +VL G V + +RA+ L++ + + +V NL+ + Sbjct: 122 LPNERIEVRTANDGIVLSGSVSSTARMERALSLAQRY------------APDRVSNLMVV 169 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF----------GGKFVS 240 AG QV LKV AE++R + KQ+ ++ + + A G + Sbjct: 170 AGNQQVMLKVRFAEMQRSVSKQLSTSLAVDALGVSGNGAALAGSNLPSAGANRVGITANN 229 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + +L ALE +RTLAEP LTA+SGQ A F +GG++ V+ Sbjct: 230 NAGVAFFGFDIGSVEIGILLEALETKGVVRTLAEPNLTALSGQEAKFLAGGEYPVP-VAQ 288 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKA 356 TS+ +GV L+F P V+ I L + VS A ++ ++R R Sbjct: 289 DNNTTSIEFKPFGVELNFIPRVVDGDIINLEMAAAVSSIDPTNGINTGAFNVDAFRRRDT 348 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 TTV+L G + +AGLL+DD + +P L +PILGALFR++ + R +TE+ I + Sbjct: 349 STTVQLRDGESFAIAGLLQDDFRDTNAQVPWLGDVPILGALFRSADYARAQTELVIIVSA 408 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR-VNKIYGPKEASEVEGQNYKGAIGFIYK 474 LV P L+ P D + + F R +N A EV Q++ G+ G++ + Sbjct: 409 HLVTPTRGEALALPTDRVRLPSEMDLFLNGRVLNSNIPSGTAGEVARQDFTGSYGYVME 467 >gi|222084469|ref|YP_002542998.1| pilus assembly secretion protein [Agrobacterium radiobacter K84] gi|221721917|gb|ACM25073.1| pilus assembly secretion protein [Agrobacterium radiobacter K84] Length = 505 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 219/487 (44%), Positives = 307/487 (63%), Gaps = 26/487 (5%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 F++ L + V + +A+ A ++ + + + +GLNK +++ +P D D Sbjct: 24 FSVAFAGLPIAEAPVFLRTAVAKADGADSIVTISGLNTKRTLKLGLNKALVVDLPADAHD 83 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 +LVSDP AD V + R +YLFGK VGQ N+ + G +G+++++LD+ IERDI+ L+ L+ Sbjct: 84 ILVSDPKMADAVTRTSRRIYLFGKTVGQTNIFVFGANGQEIVSLDLQIERDISGLQANLK 143 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK------ 182 RFI DS+I VE+VSD +VL G VRT QDS RA +L+ FL ++S Sbjct: 144 RFIPDSDINVEIVSDNIVLTGSVRTPQDSSRAQQLAGAFLKGGEATTRTETASGTGGDSS 203 Query: 183 -----------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 +++NLL I GEDQVTLKVT+AEV+R +LKQIGF ++ +SSG + + Sbjct: 204 VALFAEGRQTSQIVNLLQIEGEDQVTLKVTVAEVKRSVLKQIGFD-NLVSNSSGLTVAQL 262 Query: 232 ADFGGKFVSEGGDFSVKGVL----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 + + G+ + + +++ + L+A+E+A A+RTLAEPTLTAISGQ+A+F Sbjct: 263 GNISSDSTAATGNGGLSALFKTALGKYNVSSYLNAMEQAGAVRTLAEPTLTAISGQAATF 322 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 SGGQ LY V S G ++T + YG+ L FTP VLS GRI L +QT+VSEP A Sbjct: 323 NSGGQTLYS-VIDSDGNVTITPYTYGISLAFTPVVLSAGRISLHVQTQVSEPTGTTGAAT 381 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 Y R ADT+VELPSGG+I LAGLL D++QQ G P SKIPILGALFR F R+E Sbjct: 382 ---YNRRAADTSVELPSGGSIALAGLLSDNVQQSTTGTPGASKIPILGALFRQKTFQRDE 438 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 +E+ I ATP+LV+PVA ++RPDD++S +DA FF NRVNKIYG K+A V ++ G Sbjct: 439 SELVIIATPYLVRPVARNQIARPDDNFSPTNDAGVFFMNRVNKIYGRKDAPPVADADFHG 498 Query: 468 AIGFIYK 474 +GFIYK Sbjct: 499 TVGFIYK 505 >gi|99082186|ref|YP_614340.1| type II and III secretion system protein [Ruegeria sp. TM1040] gi|99038466|gb|ABF65078.1| Hypothetical 443 kDa protein y4xJ [Ruegeria sp. TM1040] Length = 497 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 124/461 (26%), Positives = 222/461 (48%), Gaps = 32/461 (6%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 + A IS ++ G + + +N+ ++++ V ++ +++P+ AD+ S RT+Y+ Sbjct: 50 PSPAVAQGISVLKKGTNAVLDVPMNRAVVVEADVPFAELSIANPSIADISSLSDRTIYVL 109 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 GK+ G + L+ G + N+D+ + D++ + L++ + + I V +D +VL G Sbjct: 110 GKSPGLTTLTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGT 169 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V + Q QRA++L+E + + +V NL+ + G QV LKV AE+ R + Sbjct: 170 VSSAQRLQRALDLAERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSVS 217 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------------GDFSVKGVLDRFSF 256 K +G I S + + GG G G + F Sbjct: 218 KSLGGSMLIRSSDGAIATGSFQNRGGNGNIFGDSVTSPVQLQSETLGAALFGFDIGAVQF 277 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 +L ALE+ +RTLAEP L+A+SGQ A+F +GG++ V+ G +V +G+ L Sbjct: 278 NVLLEALEQKGLVRTLAEPNLSALSGQEANFLAGGEYPVP-VAQEDGVITVEFKPFGIEL 336 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAG 372 +F P V+ I L ++ VS + + ++ R+ TTVEL G + +AG Sbjct: 337 NFIPRVVDGDLINLELKAAVSAIDTTNSATFDGFSINAFSRRETATTVELRDGESFAIAG 396 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L++D+ + +P L +P+LGALFR++ + R ++E+ I + LV P L+ P D Sbjct: 397 LIEDEFRDGAAQVPWLGDVPVLGALFRSADYARNQSELVIIVSAHLVTPTRGEALALPTD 456 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + F F + + A EV Q++ G+ G++ Sbjct: 457 RIRPPSEKNLFLFGQTERAQ-AGAAGEVANQDFNGSYGYLL 496 >gi|126737254|ref|ZP_01752989.1| bacterial type II/III secretion system protein [Roseobacter sp. SK209-2-6] gi|126721839|gb|EBA18542.1| bacterial type II/III secretion system protein [Roseobacter sp. SK209-2-6] Length = 446 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 125/462 (27%), Positives = 217/462 (46%), Gaps = 29/462 (6%) Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83 LP + A A + + G + + +N+ I+++ ++ +++P AD+ S Sbjct: 1 MALPVAEPAQANGLRVVKQ--GTSITLDVPMNRAIVVESDAPFAELSIANPNIADISSLS 58 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 RT+Y+ GK+ G + L+ GK + N+++ + D++ + LR+ + I V +D Sbjct: 59 DRTIYVLGKSPGLTTLTLLDGAGKLITNVNVRVAADVSEFKERLRQILPGEKIEVRTAND 118 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 +VL G V + QRA++L+E + + ++V NL+++ G QV LKV A Sbjct: 119 GIVLSGTVSSSARLQRALDLAERY------------APERVSNLMSVGGVQQVMLKVRFA 166 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFS 255 E+ R + K + + S ++ G + G ++ F Sbjct: 167 EMERSVSKTLSSSLAFGNSGDVIGETGTWLDGNNGLGNPVQVTQGTEGAVAISFGAGSFR 226 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 +L ALE+ +RTLAEP L+A+SGQ ASF +GG++ V + + +G+ Sbjct: 227 VGVLLEALEQKGIVRTLAEPNLSALSGQEASFLAGGEYPIPVVDADG--IGIEYKPFGIE 284 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLA 371 L F P V+ I L ++ VS N + + R TTVEL G + +A Sbjct: 285 LDFIPRVVDQDVINLELEAVVSAIDPTTTVVQNGLTINGFTRRATSTTVELRDGESFAIA 344 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL++D+ +P + IPI+GALFR++ + RE+TE+ I + LV P L+ P Sbjct: 345 GLVQDEFTDSNGQVPWVGDIPIIGALFRSASYQREQTELVIIVSAHLVTPTRGEALTLPT 404 Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 D + + F F R +EV GQ+Y G+ G++ Sbjct: 405 DRVKPPSENELFLFGRTEH-NRSGPVNEVAGQDYNGSYGYVL 445 >gi|126725970|ref|ZP_01741812.1| Outer membrane general secretion pathway protein, Secretin [Rhodobacterales bacterium HTCC2150] gi|126705174|gb|EBA04265.1| Outer membrane general secretion pathway protein, Secretin [Rhodobacterales bacterium HTCC2150] Length = 466 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 128/482 (26%), Positives = 230/482 (47%), Gaps = 42/482 (8%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 + +V+ P A + +++ +N+ I+++ +V V++P+ Sbjct: 1 MGLSLAVSTAPLSGYAETLKVVKGS----PSNSLNVPMNRAIVVETETSFGEVSVANPSI 56 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 AD+ S +T+Y+ GK G+ + L+ G+ + N+D+ + D+A + L++ + I Sbjct: 57 ADISTLSDKTIYVLGKAPGRTTLTLLDGTGRLISNVDVHVTPDVAEFKERLQQILPGEPI 116 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V +D +V+ G V +I RA++L+ + + +V NL+++ G QV Sbjct: 117 EVRTANDGIVMSGTVSSIGKLDRALDLANRY------------APNRVSNLMSVGGTQQV 164 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------------ 244 LK+ AE++R + K + + +GS G + + A S + Sbjct: 165 MLKIRFAEMQRSVAKNLTGSLAFSGSLGGNAGATGASQTFSDGSNLANLYDGDSSTSATS 224 Query: 245 -------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 FS+ F+ +L ALE +RTLAEP LTA+SGQ A F +GG++ Sbjct: 225 SQDRDGLFSIGFSNGTIGFQVLLEALETKGVVRTLAEPNLTALSGQKADFLAGGEYPTPA 284 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYR 352 + G+ + +G+ + FTPTV+ I L+++T VS ++ + ++ Sbjct: 285 I-DDNGSPIIEYKPFGIEMEFTPTVVDGDLINLQLKTSVSSLDTSISAQNSAGFTVFGFK 343 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 RKA TTVE+ G + +AGLL+DD +P L +PI+GALFR+S + R+++E+ + Sbjct: 344 TRKASTTVEMRDGQSFAIAGLLQDDFTDQSGQVPWLGDVPIIGALFRSSEYERKQSELVV 403 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG-PKEASEVEGQNYKGAIGF 471 TP LV P L+ P D + + + F F V A EV Q++ G+ G+ Sbjct: 404 IVTPHLVTPTRGEALALPTDRVQIPTERELFLFGNVAGKKKIKGAAGEVARQDFSGSYGY 463 Query: 472 IY 473 + Sbjct: 464 VM 465 >gi|15887573|ref|NP_353254.1| component of type IV pilus [Agrobacterium tumefaciens str. C58] gi|15155110|gb|AAK86039.1| component of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 527 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 209/494 (42%), Positives = 300/494 (60%), Gaps = 41/494 (8%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 +P + + +A+++ I++ G K++ +GLNK +++ +P D D+LV+DP+ AD Sbjct: 36 SPDFLRTSEAEAQSASIVRITESGTGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADA 95 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + R +YLFGK VGQ N+ + G G+++++LD+ +ERDI+ LE +RRFI +S+I+VE Sbjct: 96 VTRTSRRIYLFGKMVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVE 155 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-----------------YANSSSK 182 +VSD +VL G VRT QDS RAV+L++ FL Sbjct: 156 IVSDNIVLTGSVRTPQDSARAVQLADAFLKGGEATTRNISLTGGNNGGDAAIFAERRQVS 215 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA--ADFGGKFVS 240 +++N+L I GEDQVTLKVT+AEV R +LKQ+GF SI+ S+SG FA ++ G Sbjct: 216 QIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSISSSTSGNGFEFANPSNLGNAIDG 275 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH------- 293 S F + L+A+E+A +RTLAEP+LTAISG+ A F GG Sbjct: 276 ASRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRLAAEQE 335 Query: 294 --LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------- 344 + K T + T DYG+ L+F P VLSPGRI L+I+T VSEP N Sbjct: 336 VDIDKETGRPTITRTTNTVDYGITLNFKPVVLSPGRISLKIETNVSEPTYEGNVVTGNGG 395 Query: 345 ----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 S R R+ TTVELPSGG+IV+AGL++D+++Q G+P +SKIPI G LFR+ Sbjct: 396 RTIPGSTYMSVRKRETSTTVELPSGGSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLFRS 455 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 F R ETE+ I ATP+LV+PVA ++RPDD+++ E+DA +F NRVNK+YG K+ V Sbjct: 456 KEFLRNETELVIIATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNKVYGRKDQ--V 513 Query: 461 EGQNYKGAIGFIYK 474 + Y+G++GFIYK Sbjct: 514 QAAPYQGSVGFIYK 527 >gi|146338123|ref|YP_001203171.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278] gi|146190929|emb|CAL74934.1| putative Pilus assembly protein cpaC; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 500 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 163/493 (33%), Positives = 265/493 (53%), Gaps = 32/493 (6%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 +R L ++ + + NP++A + AA + + +++G+ K +++ Sbjct: 17 LRTLMVRALSLSAAAALTLNPALAPVIAADYRPAAAAPPAADGQINARFLALGVGKSVVI 76 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI ++RD+ Sbjct: 77 DLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDAQGQQIAAYDIAVKRDL 136 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L++ + +++I++E + D +VL G + ++Q+A EL+ Sbjct: 137 NGARAALKQLLPNADIQIEGLGDGIVLTGSASSQIEAQQAGELAARLAGG---------- 186 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 ++KV+N + + G DQV LKVT+AEV+R ++KQ+G S + FA Sbjct: 187 AEKVVNSITVRGRDQVMLKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFANSNPFTAYG 246 Query: 241 EG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + S + L A+E A IRTLAEP LTAISG+SA+F +GG+ Sbjct: 247 SNLVSNNAVSAAFGSTPSVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPA 306 Query: 298 VSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------- 339 S T V +G+ L+FTP VLS GRI +R+ TEVSE Sbjct: 307 GYSCDPTTHVCTTQISFKKFGISLNFTPIVLSEGRISMRVMTEVSELSNENSITLSQAVS 366 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 VN+ +PS + R+A+TT+E+PSGG + +AGL++ +Q G+P L ++P+LGALFR Sbjct: 367 STTVNSLTVPSIKTRRAETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGALFR 426 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + + +TE+ + TPF+V+ V+ +DLSRPDD ++ D +A +N+IYG +E Sbjct: 427 SRDYVNNQTELMVLVTPFVVRAVSQKDLSRPDDGFAAASDPQADLLGSINRIYGVPGRTE 486 Query: 460 VEGQNYKGAIGFI 472 G+NY+G GFI Sbjct: 487 P-GRNYRGTYGFI 498 >gi|84516633|ref|ZP_01003992.1| Outer membrane general secretion pathway protein, Secretin [Loktanella vestfoldensis SKA53] gi|84509669|gb|EAQ06127.1| Outer membrane general secretion pathway protein, Secretin [Loktanella vestfoldensis SKA53] Length = 476 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 131/478 (27%), Positives = 218/478 (45%), Gaps = 35/478 (7%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 + + A A + + + + +N+ ++++ V ++ +++P A Sbjct: 10 ALAGVALSMTAAAPAMAQDSTLRVLRGAASNALDVPMNRAVVVESDVPFTELSIANPGIA 69 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 D+ S RT+Y+ GK G+ + L+ DG+ + N+++ + D+A + L + + NI Sbjct: 70 DISSLSDRTIYVLGKEPGRTTLTLLSADGRLITNVEVHVSPDMAEFKERLTQILPGENIE 129 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V +D +VL G V + RA++L++ + + +V NL+++ G QV Sbjct: 130 VRTANDGIVLSGTVSSTARLDRALDLAQRY------------APDRVSNLMSVGGTQQVM 177 Query: 198 LKVTIAEVRR-------------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---E 241 LKV AE++R Q G +++ + Sbjct: 178 LKVRFAEMQRSVSKALSSSLSLNGTSLQNGRNIRGGSNTTVGQAGITNTLNNIVPTANDN 237 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G F +L ALE +R+LAEP LTA+SGQ A+F +GG++ VSS Sbjct: 238 NGAFLFGFGAGGVEVGVLLEALESRGVVRSLAEPNLTALSGQQATFLAGGEYPVP-VSSE 296 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKAD 357 GA SV +GV L+FTP V+ I L + VS N ++ ++ R+ Sbjct: 297 DGAISVEYKPFGVELNFTPRVVDGDVINLELLAAVSAIDPSNSFSANGFEISAFSRRETS 356 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTVE+ G + +AGLL DD L +P + +PILGALFR++ + R +TE+ I TP Sbjct: 357 TTVEMRDGESFAIAGLLSDDFTDLSGQVPWIGDVPILGALFRSAEYARRQTELVIIVTPH 416 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP--KEASEVEGQNYKGAIGFIY 473 LV P L+ P D + F F RV P A EV Q++ G+ G++ Sbjct: 417 LVSPTRGTALALPTDRVRPPSEQDLFLFGRVTAASAPTRGGAGEVARQDFMGSYGYVM 474 >gi|254501806|ref|ZP_05113957.1| Putative phospholipid-binding domain family [Labrenzia alexandrii DFL-11] gi|222437877|gb|EEE44556.1| Putative phospholipid-binding domain family [Labrenzia alexandrii DFL-11] Length = 483 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 166/482 (34%), Positives = 273/482 (56%), Gaps = 21/482 (4%) Query: 2 RYLQRTFFTMMS-IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 + ++R+ + + +A +EA + I+++ E + +++G+ + +++ Sbjct: 14 KSIRRSGLRFCAFAAVMGLVSFMAPASWSQEAFPSQIHVAAGERATDRILNVGIGRSVVI 73 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + D DVLVS+P AD V+ +PR +++ G GQA ++L G G+++ + DI +E+D Sbjct: 74 NLAEDAADVLVSNPQIADAVLRTPRRIFVLGNTAGQARLVLFGRSGRELASFDIRVEKDT 133 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + + +RR I ++++ E ++ VVL G ++ ++Q+A +++ F + Sbjct: 134 SDITRIIRRLIPGTSVQAESINGKVVLSGTAKSTLEAQQAADIAAKFQGDETGSA----- 188 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 ++NL+ ++G DQV LKVT+AEV R I+KQ+G +G F ++F V+ Sbjct: 189 ---IVNLIAVSGSDQVHLKVTVAEVERSIIKQLGVSFQA-NLGAGNFFPFGSNFPNFNVN 244 Query: 241 EG----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V S + AL+R IRTLAEPTLTA SG++ASF +GG+ Sbjct: 245 PSIVNQATGGVTFSSGTSSLTAQVEALQRDGVIRTLAEPTLTATSGENASFLAGGEFPIP 304 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYR 352 SV +GV L FTP VL+ GRI LR++TEVSE + + + + Sbjct: 305 IA-QEDNQISVEFKKFGVGLDFTPIVLTGGRISLRVKTEVSELSNEGAVSAGGITISALK 363 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 VR+A++T+ELPSGGT+V+AGLL++ QQ EG+P L +IP+LGALF++ F +++TE+ + Sbjct: 364 VRRAESTMELPSGGTLVMAGLLEESYQQAVEGVPGLMQIPVLGALFKSRDFLKQQTELAV 423 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 TP++VKPVA + + RPD + DA+A F NR+NKI+ A E Y G +GFI Sbjct: 424 FVTPYVVKPVAAQKMVRPDKNLFAPSDAEAIFLNRLNKIF--NPAGEQAQGTYHGQVGFI 481 Query: 473 YK 474 YK Sbjct: 482 YK 483 >gi|27376550|ref|NP_768079.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27349691|dbj|BAC46704.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 496 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 160/493 (32%), Positives = 261/493 (52%), Gaps = 34/493 (6%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MR + + NP++ + AA + + + +S+G+ K I++ Sbjct: 15 MRTSMVRALSFSAALALVLNPALTPVVAADYRPAAPV--AADGQMNARFLSLGVGKSIVI 72 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI ++RD+ Sbjct: 73 DLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSAGQQIAAYDIAVKRDL 132 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + L++ + +S+I+++ + + +VL G ++Q+A +L+ Sbjct: 133 NGVRAALKQILPNSDIQIDGLGEGIVLTGTAANPMEAQQANDLAARLAGG---------- 182 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 + KV+N + + G DQV LKVT+AEV R I+KQ+G + + +F+ + Sbjct: 183 ADKVVNSIVVRGRDQVMLKVTVAEVARSIVKQLGIDLTANLNYGTSVVTFSNSNPFTALG 242 Query: 241 EG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + G+ S + L A+E A IRTLAEP LTAISG+SA+F +GG+ Sbjct: 243 KNLVDGNSLTTKFGATPSVQATLRAMETAGVIRTLAEPNLTAISGESATFIAGGEFPVPA 302 Query: 298 VSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------- 339 + T V +G+ L+FTP VL+ G+I LR+ TEVSE Sbjct: 303 GYACDPTTHVCTTQISFKKFGISLNFTPVVLTEGKISLRVMTEVSELSNENAITLSQAVT 362 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 VN+ +PS + R+A+T++E+PSGG + +AGL++ +Q G+P L ++PILG LFR Sbjct: 363 STSVNSLTVPSIKTRRAETSLEIPSGGAMAMAGLIQQQTKQAVSGLPGLMQLPILGTLFR 422 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + F TE+ + TP++V+ VA +DLSRPDD +S D + +N+IYG +E Sbjct: 423 SRDFVNNATELVVIVTPYIVRAVAQKDLSRPDDGFSAPADPQVELLGNINRIYGVPGRTE 482 Query: 460 VEGQNYKGAIGFI 472 G+NY+G GFI Sbjct: 483 P-GRNYRGTYGFI 494 >gi|126733573|ref|ZP_01749320.1| bacterial type II/III secretion system protein [Roseobacter sp. CCS2] gi|126716439|gb|EBA13303.1| bacterial type II/III secretion system protein [Roseobacter sp. CCS2] Length = 476 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 130/478 (27%), Positives = 219/478 (45%), Gaps = 35/478 (7%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 + L + A + + +S+ +++ ++++ V ++ +++P A Sbjct: 10 AIAGLTLSLTAAAPSIAPAETLRVLRGAASSALSVPMSRAVVVESDVPFTELSIANPGIA 69 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 D+ S RT+Y+ GK G+ + L+G +G+ + N++I + D+A + L + + NI Sbjct: 70 DISSLSDRTIYVLGKEPGRTTLTLLGENGRLITNVEIHVSPDMAEFKERLTQILPGENIE 129 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V +D +VL G V +I RA++L+E + + ++V NL+ + G QV Sbjct: 130 VRTANDGIVLSGTVSSIARLDRALDLAERY------------APERVSNLMMVGGTQQVM 177 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------------GKFVSE 241 LKV AE++R + K + +++G S + Sbjct: 178 LKVRFAEMQRSVSKALSTSVALSGLGFDDDVSITGGTNRTIGQSAINGALSGSVPGSNAN 237 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G +L ALE +R+LAEP LTA+SGQ A+F +GG++ T + Sbjct: 238 NGAVLFGFGAGGLEVGILLEALETRGVVRSLAEPNLTALSGQEATFLAGGEYPVPTANDG 297 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKAD 357 G SV +GV L F P V+ I L + VS N + ++ R+ Sbjct: 298 -GTISVEFRPFGVELSFVPRVVDHDIINLELSAAVSAIDPSNGFQANGFSVDAFTRRETS 356 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTVE+ G + +AGLL DD L +P + IP+LGALFR++ + R +TE+ I TP Sbjct: 357 TTVEMRDGESFAIAGLLSDDFTDLNGQLPWVGDIPVLGALFRSAEYARRQTELVIIVTPH 416 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP--KEASEVEGQNYKGAIGFIY 473 LV P L+ P D + F F +V GP A EV Q++ G+ G++ Sbjct: 417 LVSPTRGEALALPTDRVRPPTEQGLFLFGQVANEGGPSSGGAGEVARQDFSGSYGYVL 474 >gi|154250689|ref|YP_001411513.1| type II and III secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154639|gb|ABS61856.1| type II and III secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 491 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 162/470 (34%), Positives = 256/470 (54%), Gaps = 29/470 (6%) Query: 23 VAKLPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 V+ +A ++ I IG + I +GLNK I+++P+ +DVLVS+P D VV Sbjct: 31 VSPAGGAFAGDARLVKIDQGGIGQSSRSIVLGLNKAAIVELPIAARDVLVSNPAIVDAVV 90 Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141 + + YL G VGQ N G+Q+LNL+I + RD+ L +LR++ + I VE + Sbjct: 91 RTNKRTYLIGLAVGQTNAFFFNEAGQQILNLEIRVARDLTGLRESLRQYFPKARIDVESI 150 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 +D VVL GMV + D+ +A + + ++ + V+N+L I G++QV LKVT Sbjct: 151 NDHVVLSGMVASATDASKAQDFAARYIGGDK---------EHVLNMLGIEGKEQVMLKVT 201 Query: 202 IAEVRRDILKQIGFQHSITGS---------SSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 +AE++R+++KQ+G S + +S GG + + Sbjct: 202 VAEMQRNVIKQLGVDLSTAANFGDFALRLATSNSFSVQGGSLGGLTTAADAADPTRYQSG 261 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + ++ + ALER +RTLAEP LTAISG+SA F +GG+ T G + + Sbjct: 262 DVTVDSAIRALERDGILRTLAEPNLTAISGESAKFLAGGEFPVPTSRDRDGNVQLEFKPF 321 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMPSYRVRKADTTVELP 363 GV L+FTP VLS GRI L+I TEVSE + +P +VR+A+TT+ELP Sbjct: 322 GVGLNFTPVVLSEGRISLKISTEVSELTSEGAFVFQSTSADGVTVPGLKVRRAETTLELP 381 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SGG++V+AGLL D ++Q +G+P + +P+LG LFR+ + + ETE+ + TP+LV P + Sbjct: 382 SGGSLVMAGLLSDTMRQNIDGVPGVKDVPVLGQLFRSRDYQKNETELVVIVTPYLVDPTS 441 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 ++L P D ++ D R+N YG + A+ + + +G +GFI Sbjct: 442 RKNLVLPTDGFAPASDMDTILMGRLNATYGARGAAPGD-HSLQGPVGFIV 490 >gi|159043678|ref|YP_001532472.1| type II and III secretion system protein [Dinoroseobacter shibae DFL 12] gi|157911438|gb|ABV92871.1| type II and III secretion system protein [Dinoroseobacter shibae DFL 12] Length = 474 Score = 349 bits (894), Expect = 7e-94, Method: Composition-based stats. Identities = 131/468 (27%), Positives = 222/468 (47%), Gaps = 37/468 (7%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 A A V+ + + + + + +N+ ++++ + ++ V++P AD+ S R++Y Sbjct: 22 TAPAMAQVLRVQEGQAD--STLQVPMNRAVVVESDIPFAELSVANPGIADIATLSDRSIY 79 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 + GK+ G+ + L+G DG+ + N+D+ + DIA + L + + NI V +D VVL Sbjct: 80 VLGKSQGRTTMTLLGADGRLITNVDVQVTPDIAEFKERLEQILPGENIEVRTANDGVVLS 139 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G ++ RA++L++ + + +V NL++I G QV LKV AE++R Sbjct: 140 GTASSVTAMDRALDLAQRY------------APDRVSNLMSIGGSQQVMLKVRFAEMQRS 187 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------------EGGDFSVKGVLD 252 + KQ+ + S + + S GG G + + Sbjct: 188 VSKQLSGGLTAIYSGTDGAFSVGLGSGGLTDGGSIGGANSTEFTLNPEAAGTIGLGFNIG 247 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 S +L ALE +RTLAEP LT +SGQ ASF +GG++ V+ G SV + Sbjct: 248 NVSLGILLEALESKGVVRTLAEPNLTTLSGQEASFLAGGEYPIP-VADGDGGISVEYKPF 306 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTI 368 GV L F PTVL I L + VS ++ + + R+ TTV+L G + Sbjct: 307 GVELDFIPTVLDDDVINLELGAAVSALDSSASIITDSLTVQGFSRRETLTTVQLRDGDSF 366 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +AGLL+DD + +P L IP+LGALFR++ + R ++E+ I T LV P L Sbjct: 367 AIAGLLEDDFRDFAGQVPWLGDIPVLGALFRSADYARSQSELVIIVTAHLVSPTRGEALV 426 Query: 429 RPDDHYSVEDDAKAFFFNRV--NKIYGPKEASEVEGQNYKGAIGFIYK 474 P D + + + F + A EV Q++ G+ G++ + Sbjct: 427 LPTDRVRIPSEREFFLNGNLVREDTPRRGAAGEVAQQDFSGSYGYVLE 474 >gi|241207157|ref|YP_002978253.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861047|gb|ACS58714.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 499 Score = 349 bits (894), Expect = 7e-94, Method: Composition-based stats. Identities = 223/483 (46%), Positives = 307/483 (63%), Gaps = 25/483 (5%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 S + +S + + + +++ IS +++ +GLNK +++ +P D D+LV Sbjct: 22 ASGMVPASFAPLFGAGEARADSDSLVRISQTGSNAHRRLKLGLNKAVVVDLPEDAHDILV 81 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 SDPT AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE+ LRRFI Sbjct: 82 SDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNLRRFI 141 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS----------- 180 DSNI VE+VSD +VL G VRT QD+ +A +L++ FL ++ Sbjct: 142 PDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVAL 201 Query: 181 ------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFA 231 S +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + + +G + S + Sbjct: 202 FAEGRQSSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQLGSPS 261 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 AD V G K + ++ T L+ALE+A ++TLAEPTLTAISGQ+A+F SGG Sbjct: 262 ADSAASTVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATFNSGG 321 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 Q LY T S G +V +YG+ L F P VLS GRI L+I+T VSEPV G Y Sbjct: 322 QQLYSTT-DSDGNVTVVPFNYGISLAFKPVVLSSGRISLQIKTNVSEPVAGSGNAT---Y 377 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+ETE+ Sbjct: 378 QRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELV 437 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471 I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G+IGF Sbjct: 438 IIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGF 496 Query: 472 IYK 474 IYK Sbjct: 497 IYK 499 >gi|86748907|ref|YP_485403.1| type II and III secretion system protein [Rhodopseudomonas palustris HaA2] gi|86571935|gb|ABD06492.1| type II and III secretion system protein [Rhodopseudomonas palustris HaA2] Length = 479 Score = 349 bits (894), Expect = 9e-94, Method: Composition-based stats. Identities = 164/481 (34%), Positives = 269/481 (55%), Gaps = 25/481 (5%) Query: 6 RTFFTMMS-IFLFSSNPSVAKLPPIKEANAAVINISDVEIGK---GKKISIGLNKVIILQ 61 R T+ S+ ++ LPP A+ + + G + +++G+ K +++ Sbjct: 8 RFIRTLTGTAMAVSAVVALTMLPPWTPVKASDYRATTTQTGGGMNARPLALGIGKSVVID 67 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 +P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI + RD+ Sbjct: 68 LPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTRDLN 127 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + L++ I +++IRVE + D V+L G V T ++Q+A +L+ + Sbjct: 128 GIRAALQQSIPNADIRVEGLGDGVILMGSVATPIEAQQAADLAARLAGD----------A 177 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 KV+N + I G DQV LK+T+AEV+RDI+KQ+G + S SF + Sbjct: 178 SKVVNNIAIRGRDQVMLKITVAEVQRDIVKQLGVDLTANLSYGTSVVSFTNTNPFTQSGQ 237 Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G+ + S L A+E A +RTLAEP LTAISG+ ASF +GG+ + Sbjct: 238 ALVSGNALTTSFGNGPSITATLKAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPVPSG 297 Query: 299 SSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGDMPSY 351 + T SV+ +GV+L+FTP VLS GRI L++ TEV S+ + ++ +PS Sbjct: 298 VTCTNAVCTPSVSYKKFGVLLNFTPVVLSEGRISLKVATEVSEVSSDNSVTISGTTVPSI 357 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R+ D+TVE+PSGG++ +AGL+++ +Q G+P +++IPILG LFR+ + ++E+ Sbjct: 358 KTRRVDSTVEIPSGGSLAMAGLIQEQTKQAINGMPGMTQIPILGTLFRSRDYINRQSELM 417 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471 + TP++V+ VA +DLSRPDD ++ D ++ +N+IYG + + Q Y+G GF Sbjct: 418 VLVTPYVVRAVAPKDLSRPDDGFADASDPQSDLLGSINRIYGVPGRT-GQSQTYRGRFGF 476 Query: 472 I 472 I Sbjct: 477 I 477 >gi|86355864|ref|YP_467756.1| pilus assembly secretion protein [Rhizobium etli CFN 42] gi|86279966|gb|ABC89029.1| pilus assembly secretion protein [Rhizobium etli CFN 42] Length = 498 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 225/498 (45%), Positives = 310/498 (62%), Gaps = 30/498 (6%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPI-----KEANAAVINISDVEIGKGKKISIGLNK 56 R + +S+ + ++ + A P+ A +++ IS +++ +GLNK Sbjct: 6 RRAKLLLTGCLSLAVGATGIAPASFGPLLVVNEARAAESLVRISQTGPDAHRRLKLGLNK 65 Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 +++ +P D D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++NLDI I Sbjct: 66 AVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEVVNLDIEI 125 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 ERD++ LE LRRFI DSNI+VE+VSD +VL G VRT QD+ +A +L++ FL Sbjct: 126 ERDVSGLETNLRRFIPDSNIKVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTR 185 Query: 177 ANSSS-----------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217 ++S +V+NLL I GEDQVTLKVTI EVRR++LKQ+GF + Sbjct: 186 TETASGTGGDSSVALFAEGRQTSQVVNLLQIQGEDQVTLKVTITEVRREVLKQLGFDNLV 245 Query: 218 -SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + +G + S AD V G K + ++ T L+ALE+A +RTLAEPT Sbjct: 246 SNSSGMTVAQLGSPNADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPT 305 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 LTAISGQ+A+F SGGQ LY T + G +V +YG+ L F P VLS GRI L I+T V Sbjct: 306 LTAISGQAATFNSGGQQLYSTT-DNNGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNV 364 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 SEPV G Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG Sbjct: 365 SEPVAGSGNAT---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGT 421 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +E Sbjct: 422 LFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRRE 481 Query: 457 ASEVEGQNYKGAIGFIYK 474 A + Q + G+IGFIYK Sbjct: 482 APVADAQ-FHGSIGFIYK 498 >gi|91977985|ref|YP_570644.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB5] gi|91684441|gb|ABE40743.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB5] Length = 480 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 158/482 (32%), Positives = 266/482 (55%), Gaps = 23/482 (4%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 +R L+ T + ++ + P++A + + + + + +++G+ K +++ Sbjct: 10 IRTLKGTAMALSAVVALTLFPTLAPVQASDY-RDTPARMGNSGLN-ARPLALGIGKSVVI 67 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI + RD+ Sbjct: 68 DLPRDIKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTRDL 127 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + LR+ I +++I+VE + D V+L G V T ++Q+A +L+ Sbjct: 128 NGIRTALRQSIPNADIQVEGLGDGVMLIGSVATPIEAQQAADLAARLAGD---------- 177 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGK 237 + KV+N + + G DQV LK+T+AEV+RDI+KQ+G + G+S + Sbjct: 178 ASKVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLTASMNYGTSVVKFSNTNPFTQSG 237 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + S L A+E A +RTLAEP LTAISG+ ASF +GG+ + Sbjct: 238 GPLVANNALTTSFGSGPSVSATLRAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPVPS 297 Query: 298 VSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPS 350 + T SVT +GV+L+FTP VL+ GRI L++ TEVSE + +PS Sbjct: 298 GVTCTNSLCTPSVTFKKFGVLLNFTPVVLTEGRISLKVSTEVSEVSSDNSIVIGGLSVPS 357 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R+ ++TVE+PSGG++ +AGL+++ +Q G+P ++++PILG LFR+ + +TE+ Sbjct: 358 IKTRRIESTVEIPSGGSLAMAGLIQEQTKQAINGLPGMTQLPILGTLFRSRDYINRQTEL 417 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 + TP++V+ VA +DLSRPDD ++ D ++ +N+IYG + Q Y+G G Sbjct: 418 MVMVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGNINRIYGVPGRTGPA-QTYRGRFG 476 Query: 471 FI 472 FI Sbjct: 477 FI 478 >gi|39936740|ref|NP_949016.1| type II and III secretion system protein [Rhodopseudomonas palustris CGA009] gi|192292566|ref|YP_001993171.1| type II and III secretion system protein [Rhodopseudomonas palustris TIE-1] gi|39650596|emb|CAE29119.1| putative exporter protein, cpaC [Rhodopseudomonas palustris CGA009] gi|192286315|gb|ACF02696.1| type II and III secretion system protein [Rhodopseudomonas palustris TIE-1] Length = 480 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 158/476 (33%), Positives = 260/476 (54%), Gaps = 23/476 (4%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T + + + PS + A V S + IS+G+ K +++ +P D+ Sbjct: 16 TAIALSAAVALTLIPSWTAVHASDYRAAPVPPASSGL--NAQSISLGIGKSMVIDLPRDI 73 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 +DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI + RD+ L Sbjct: 74 KDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSAGRQIAAYDIAVTRDLNGLRTA 133 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L++ + ++ I+VE + D V+L+G V + D+Q+A +L+ + + KKV+N Sbjct: 134 LKQTLPNAEIQVEGLGDGVMLNGWVTSPIDAQQAYDLAVRLVGED----------KKVVN 183 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFVSEGG 243 + + G DQV LK+T+AEV+RDI+KQ+G S + +F Sbjct: 184 NIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGTAVVNFNNSNPFTQSGGPLVSS 243 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + S L A+E A +RTLAEP LTAISG+ A+F +GG+ + + T Sbjct: 244 NALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAISGEPATFLAGGEFPVPSGVTCTN 303 Query: 304 ---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKA 356 SVT +G++L+FTP V++ GRI L++ TEVSE + +PS + R+ Sbjct: 304 GVCTPSVTFKKFGILLNFTPVVMTAGRISLKVMTEVSEVSSDNSVIISNMSVPSIKTRRV 363 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 ++TVE+PSGG++ +AGL+++ +Q G+P +++PILG LFR+ + +TE+ + TP Sbjct: 364 ESTVEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLPILGTLFRSRDYINRQTELMVLVTP 423 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 ++V+ VA +DLSRPDD ++ D ++ +NK+YG +E + Y+G GFI Sbjct: 424 YVVRAVAQKDLSRPDDGFADASDPQSDLLGSINKLYGVPGRTEPA-RTYRGRFGFI 478 >gi|190889881|ref|YP_001976423.1| pilus assembly secretion protein [Rhizobium etli CIAT 652] gi|190695160|gb|ACE89245.1| pilus assembly secretion protein [Rhizobium etli CIAT 652] gi|327194694|gb|EGE61540.1| pilus assembly secretion protein [Rhizobium etli CNPAF512] Length = 499 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 225/487 (46%), Positives = 308/487 (63%), Gaps = 29/487 (5%) Query: 12 MSIFLFSSNPSV-AKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I + P+ L + EA A +I I+ +++ +GLNK +++ +P D Sbjct: 18 LAISVTGMAPATFGPLLAVDEARADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE L Sbjct: 78 DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182 RRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL ++S Sbjct: 138 RRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 197 Query: 183 ------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPS 227 +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + + +G + Sbjct: 198 AVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFDNLISNSSGMTVAQL 257 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 + +AD V G K + ++ T L+ALE+A +RTLAEPTLTAISGQ+A+F Sbjct: 258 GTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATF 317 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 SGGQ LY T + G +V +YG+ L F P VLS GRI L I+T VSEPV G Sbjct: 318 NSGGQQLYSTT-DNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNAT 376 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+E Sbjct: 377 ---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQE 433 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 TE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G Sbjct: 434 TELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHG 492 Query: 468 AIGFIYK 474 +IGFIYK Sbjct: 493 SIGFIYK 499 >gi|209551759|ref|YP_002283676.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537515|gb|ACI57450.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 499 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 221/487 (45%), Positives = 307/487 (63%), Gaps = 29/487 (5%) Query: 12 MSIFLFSSNPSVAKL----PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 +++ + P+ + + ++ IS +++ +GLNK +++ +P D Sbjct: 18 LAVGISGIAPASFAPLLGSSEARADSENLVRISQTGRDAHRRLKLGLNKAVVVDLPEDAH 77 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE+ L Sbjct: 78 DILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNL 137 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182 RFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL ++S Sbjct: 138 HRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 197 Query: 183 ------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPS 227 +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + + +G + Sbjct: 198 SVALFAEGRQTSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQL 257 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 S +AD V G K + ++ T L+ALE+A ++TLAEPTLTAISGQ+A+F Sbjct: 258 GSPSADSATSVVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATF 317 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 SGGQ LY T S G +V +YG+ L F P VLS GRI L+I+T VSEPV G + Sbjct: 318 NSGGQQLYSTT-DSNGNVTVVPFNYGINLAFKPVVLSSGRISLQIKTNVSEPVAGSSGAT 376 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+E Sbjct: 377 ---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQE 433 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 TE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G Sbjct: 434 TELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHG 492 Query: 468 AIGFIYK 474 +IGFIYK Sbjct: 493 SIGFIYK 499 >gi|163733542|ref|ZP_02140985.1| type II/III secretion system protein, putative [Roseobacter litoralis Och 149] gi|161393330|gb|EDQ17656.1| type II/III secretion system protein, putative [Roseobacter litoralis Och 149] Length = 440 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 121/455 (26%), Positives = 213/455 (46%), Gaps = 24/455 (5%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 A A + I E + +++ N+ ++++ + ++ +++P AD+ S R++ Sbjct: 2 APLTAQAEALRIIARET--SETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSDRSI 59 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 Y+ GK G + L+ G+ + N+++ + D+ + LR+ + I V +D +VL Sbjct: 60 YVLGKVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKERLRQILPGEAIEVRTANDGIVL 119 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + Q +A+EL+ + + +V NL+ + G QV LKV AE+ R Sbjct: 120 SGQVSSSQRLSKALELAARY------------APDRVSNLMTVGGVQQVMLKVRFAEMSR 167 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALER 265 + KQ+ I G+ + ++ G L + +L ALE Sbjct: 168 GVSKQLQSSLRIGGTEAQAGIGRGIGGIPNLAADTAQGAVFFDFGLGSTQVQLLLEALET 227 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 A+RTLAEP L ++SGQ A+F +GG++ S SV +G+ L+F P V+ Sbjct: 228 KGAVRTLAEPNLVSLSGQEANFLAGGEYPVPV--QSEDGISVDYKPFGIELNFVPRVVDG 285 Query: 326 GRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I L++ S + + ++ R+A TTVE+ G + +AGLL+D+ Sbjct: 286 DLINLQLSAATSSIDPSNGISVGDSFTVDAFIRREASTTVEMRDGESFAIAGLLEDNFND 345 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 +P LS +PILGALFR++ + R +TE+ I T LV P L+ P D + Sbjct: 346 NISQVPWLSDVPILGALFRSTDYMRNQTELVIIITAHLVTPTRGEALALPTDRIRPPSEK 405 Query: 441 KAFFFNR-VNKIYGPKEASEVEGQNYKGAIGFIYK 474 F R + + A EV Q++ G+ G++ + Sbjct: 406 DLFLNGRTIQTLNARGAAGEVAKQDFGGSYGYVME 440 >gi|294676059|ref|YP_003576674.1| type II and III secretion system protein [Rhodobacter capsulatus SB 1003] gi|294474879|gb|ADE84267.1| type II and III secretion system protein [Rhodobacter capsulatus SB 1003] Length = 469 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 124/470 (26%), Positives = 219/470 (46%), Gaps = 43/470 (9%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 A + I +++ +N+ ++++ ++ +++P ADV S +T+ Sbjct: 20 VTLPVAAETLRIVSGT--GSTPLAVPMNRAVVVESDQPFSELSIANPGIADVTTLSDKTI 77 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 Y+ GK G+ + ++G DG + N+++ + DIA + L++ + NI V +D +VL Sbjct: 78 YVLGKVPGRTTMTILGADGTLLSNVEVQVTPDIAEFKERLKQILPGENIEVRTANDGIVL 137 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + RA++L+ + ++V NL+N+ G QV LKV AE++R Sbjct: 138 SGTVSSSAKLDRALDLARRYAG------------ERVSNLMNVGGTQQVMLKVRFAEMQR 185 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------------GDFSVK 248 + K + ++ G+ G + G + G + Sbjct: 186 SVSKNLASSLAMRGTVGGGNAQTGVITGTGNFTATDAVGNAFDKGTMPISASTQGALGLG 245 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + F +L ALE +RTLAEP LTA+SGQ A F +GG++ V ++ Sbjct: 246 FTVGNMEFGVLLEALESKGMVRTLAEPNLTALSGQQAKFLAGGEYPIPVV--DDDGITIE 303 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPS 364 +GV + F P V+ I L I VS + N + +++ R+ TTVE+ Sbjct: 304 YKPFGVEMSFIPRVVDGDLINLEIAAAVSAIDTSVTMTNNGTTVNAFKRRETSTTVEMRD 363 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G + +AGLL+DD L IP L +P+LG+LFR++ F R+++E+ I TP LV P Sbjct: 364 GESFAIAGLLQDDFNDLNTQIPWLGDVPVLGSLFRSTAFERKQSELVIIITPHLVTPTHG 423 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 L+ P D + +++ F + A EV Q++ G+ G++ + Sbjct: 424 EALALPTDRIRLPSESELFLRGKTEG----GAAGEVARQDFSGSYGYVME 469 >gi|220922779|ref|YP_002498081.1| type II and III secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947386|gb|ACL57778.1| type II and III secretion system protein [Methylobacterium nodulans ORS 2060] Length = 494 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 151/472 (31%), Positives = 239/472 (50%), Gaps = 20/472 (4%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 A + A V+++ E ++I + + +++ +P D ++V V++P A Sbjct: 24 GLASPAAAQQRVPAMPAPVLSVGPQEADISRRIDLTQGRSLVVDLPRDAKEVFVANPKVA 83 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 + VV S R +++ G G ++ ++ +G+Q+ LD+ + RD+ L TL I Sbjct: 84 NAVVRSTRKVFIIGVENGATSIFVMDAEGRQIAALDVTVGRDLNVLRQTLASSIPKGRFE 143 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V D+++L G V + ++Q+A++++ F+ G + +N + I G+DQV Sbjct: 144 VRPAGDSILLSGSVNSAAEAQQAIDVANAFVGIGGGGVPGRGAV---INNITIRGKDQVM 200 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 L+VT+ EV R +LKQ G S S+ + + A GG F S Sbjct: 201 LRVTVVEVSRSVLKQFGVNLSGNWSNLNFANVAPLALNGGSFPIGNAISGSINFGGGASL 260 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------GATSVT 308 L A E+A R LAEPTLTAISG+SA FT+GGQ + + SVT Sbjct: 261 TATLKAFEQAGVSRVLAEPTLTAISGESAKFTAGGQLPVPGNLACSAPSNGVQLCTPSVT 320 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTV 360 YGV L FTP VLS RI +R+ T+V+E + +P + VR ++TTV Sbjct: 321 FKPYGVSLTFTPVVLSENRISIRVGTDVTEIDPQNSMNINFSGTTTAIPGFTVRTSETTV 380 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I TP++ K Sbjct: 381 ELASGATMMTAGLIQQRNRAAITGLPALMNLPILGALFRSRDYQRDETELMIMVTPYIAK 440 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 + ++ RPDD + D +A R N++YG AS + + Y G GFI Sbjct: 441 AMEPAEIKRPDDGFVDATDGQAVLLGRFNRLYGVVGASPLAPKAYHGRFGFI 492 >gi|89068017|ref|ZP_01155434.1| Outer membrane general secretion pathway protein, Secretin [Oceanicola granulosus HTCC2516] gi|89046256|gb|EAR52313.1| Outer membrane general secretion pathway protein, Secretin [Oceanicola granulosus HTCC2516] Length = 482 Score = 345 bits (886), Expect = 7e-93, Method: Composition-based stats. Identities = 130/459 (28%), Positives = 216/459 (47%), Gaps = 43/459 (9%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 + + + +N+ ++++ +V +++P AD+ S RT+Y+ GK G+ + L+G Sbjct: 36 APSRALQVPMNRAVVVESDTPFTEVSIANPGIADISTLSDRTLYVLGKEPGRTTLTLLGA 95 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 DG+ + N+++ + DI + L + + +I V ++ +VL G V +I RA+EL+ Sbjct: 96 DGRLITNVEVQVTPDIDEFKERLAQILPGEHIEVRTAANGIVLSGTVSSIARLDRALELA 155 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + + +V NL+ + G QV LKV AE++R + K + + G++ Sbjct: 156 QRY------------APDRVSNLMTVGGVQQVMLKVRFAEMQRSVSKSLSSSLTARGTAL 203 Query: 225 GPSKSFAADFGG----------------KFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 G + A G + G + +L ALE Sbjct: 204 GENLGLTAGTGTLTGNGAIGSALNGNVPAANANNGALLLGFNAGGVEIGMLLEALESRGV 263 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 +RTLAEP LTA+SGQ A F +GG++ VS G+ S+ +GV L+F P V+ I Sbjct: 264 VRTLAEPNLTALSGQEARFLAGGEYPVP-VSQDGGSISIEYKPFGVELNFIPRVVDGDLI 322 Query: 329 GLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L +Q VS + ++R R+ TTVE+ G + +AGLL DD L Sbjct: 323 NLELQASVSSIDPTNGFVQGGFSIDAFRRRETSTTVEMRDGESFAIAGLLSDDFIDLNSQ 382 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +P + IP+LGALFR++ + R +TE+ I TP LV P L+ P D + F Sbjct: 383 LPFVGDIPVLGALFRSAEYERNQTELVIIVTPHLVTPTRGEALALPTDRVRPPSERDLFL 442 Query: 445 FNRVNKIYGPK----------EASEVEGQNYKGAIGFIY 473 F RV G A+EV Q++ G+ G++ Sbjct: 443 FGRVTAPDGSPIPSSSAPQSGAAAEVARQDFSGSYGYVL 481 >gi|83950066|ref|ZP_00958799.1| bacterial type II/III secretion system protein [Roseovarius nubinhibens ISM] gi|83837965|gb|EAP77261.1| bacterial type II/III secretion system protein [Roseovarius nubinhibens ISM] Length = 429 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 131/441 (29%), Positives = 213/441 (48%), Gaps = 34/441 (7%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 +N+ I+++ V ++ V++ + AD S RT+YL GK G+ + L+ G+ + N++ Sbjct: 1 MNRAIVVESDVPFAELSVANASIADFSTLSDRTIYLLGKAPGRTTLTLLDEAGRLITNVE 60 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 I + DI+ + LR+ + + I V +D +VL G+V + QRA++L++ + Sbjct: 61 IHVSADISEFKERLRQILPNEKIEVRTANDGIVLSGVVSSTPRMQRALDLAQRY------ 114 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 + ++V NL++++G+ QV LKV AE++R + K +G I G S+ + Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKSLGTSLFIDGLSNAGIGGAIST 168 Query: 234 FG---------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 G G + G + ++ ALE +RTLAEP LT Sbjct: 169 NGIGSSAQTPVGVQPGTGTAGTNNGAAFIGLNAGSAQVGILIQALESKGLVRTLAEPNLT 228 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A+SGQ A+F +GG++ V+ GA +V +GV L+F P VL I L I VS Sbjct: 229 ALSGQEANFLAGGEYPIP-VAQEEGAIAVEFKPFGVQLNFVPYVLDDEVINLEIAAAVSS 287 Query: 339 PVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + +R R TTV L G + +AGLL+DD + +P L +PIL Sbjct: 288 IDPSNGYSDGTITIAGFRTRSTSTTVSLRDGDSFAIAGLLQDDFEDTNGQVPWLGDLPIL 347 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK--IY 452 GALFR++ + R +TE+ I T LV P L+ P D +A F RV + Sbjct: 348 GALFRSANYQRSQTELVIIVTAHLVTPTRGEALALPTDRVLPPSEADLFLNGRVARQVRN 407 Query: 453 GPKEASEVEGQNYKGAIGFIY 473 EV Q++ G+ G++ Sbjct: 408 SKGSVGEVAKQDFNGSYGYVM 428 >gi|75674499|ref|YP_316920.1| type II and III secretion system protein [Nitrobacter winogradskyi Nb-255] gi|74419369|gb|ABA03568.1| type II and III secretion system protein [Nitrobacter winogradskyi Nb-255] Length = 493 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 161/489 (32%), Positives = 262/489 (53%), Gaps = 35/489 (7%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDV 66 ++ + A L P+ ++ V + + +S+G+ K +++ +P DV Sbjct: 14 VARSLAFAAIGAFTLDAALTPVFASDYRVSGAATAGANMHAQSLSLGIGKSVVVDLPRDV 73 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 +DVLV+DP A+ VV S + Y+ G VGQ N+I G+Q+ DI + RD+ L Sbjct: 74 KDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQQISAYDIAVTRDLNGLRTA 133 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L++ + ++ I+V+ + D V+L G V ++Q+A +L+ ++KV+N Sbjct: 134 LKQLLPNAAIKVDGLGDGVMLSGWVSNPIEAQQAGDLAARLTDG----------AQKVVN 183 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAADFGGK 237 + + G DQV LKVT+AEV R ++KQ+G S +++ P + Sbjct: 184 NIAVRGRDQVMLKVTVAEVARTVIKQMGIDLSASMNYGTAVVNFTNANPFTALGRPLTNN 243 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + ++ G + L A+E A IRTLAEP LTAISG+SA+F SGG+ Sbjct: 244 SAAASFGSTMVGGAPVPAVTATLRAMESAGVIRTLAEPNLTAISGESATFISGGEFPIPA 303 Query: 298 VSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--------- 343 S AT V +G+ L+FTP VL+ GRI LR+ TEVSE Sbjct: 304 GFSCDPATRVCLTQIRFKKFGISLNFTPVVLTEGRISLRVMTEVSELSNENSMTLNQSVG 363 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 N+ +PS R R+A+TT+E+PSGG++ +AGL+ +Q+ G+P ++++P+LGALFR+ + Sbjct: 364 NSLTVPSIRTRRAETTLEIPSGGSMAMAGLIHQQTKQVINGLPGIAQVPVLGALFRSRDY 423 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 +TE+ + TP++V+ VA +DLSRPDD ++ D ++ +N+IYG E + Sbjct: 424 VNGQTELMVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSLNRIYGAPGRVEPA-R 482 Query: 464 NYKGAIGFI 472 +Y+G GFI Sbjct: 483 HYRGTYGFI 491 >gi|259417373|ref|ZP_05741292.1| type II and III secretion system protein [Silicibacter sp. TrichCH4B] gi|259346279|gb|EEW58093.1| type II and III secretion system protein [Silicibacter sp. TrichCH4B] Length = 442 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 124/445 (27%), Positives = 217/445 (48%), Gaps = 30/445 (6%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G + + +N+ ++++ V ++ +++P AD+ S RT+Y+ GK+ G + L+ Sbjct: 11 GTNAVLDVPMNRAVVVEADVPFAELSIANPGIADISSLSDRTIYVLGKSPGMTTLTLLDG 70 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G + N+D+ + D++ + L++ + + I V +D +VL G V + Q QRA++L+ Sbjct: 71 SGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGTVSSAQRLQRALDLA 130 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 E + + +V NL+ + G QV LKV AE+ R + K +G I S Sbjct: 131 ERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSMLIGSSDG 178 Query: 225 GPSKSFAAD---FGGKFVSEG---------GDFSVKGVLDRFSFETVLHALERATAIRTL 272 S + GG F ++ G + F +L ALE+ +RTL Sbjct: 179 NVSTGTFLNRPEGGGVFGTDSPVNLKADTLGAAIFGFDIGAVQFNVLLEALEQKGLVRTL 238 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 AEP L+A+SGQ ASF +GG++ V+ G +V +G+ L+F P V+ I L + Sbjct: 239 AEPNLSALSGQEASFLAGGEYPVP-VAQEEGVVTVEFKPFGIELNFIPRVVDGDLINLEL 297 Query: 333 QTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + VS + + ++ R+ TTVEL G + +AGL++D+ + +P L Sbjct: 298 KAAVSAIDTTNAATFDGFSINAFSRRETATTVELRDGESFAIAGLIEDEFRDGAAQVPWL 357 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 +P+LGALFR++ + R ++E+ I + LV P L+ P D + F F R Sbjct: 358 GDVPVLGALFRSADYERNQSELVIIVSAHLVTPTRGEALALPTDRIRPPSEKNLFLFGRT 417 Query: 449 NKIYGPKEASEVEGQNYKGAIGFIY 473 + A EV Q++ G+ G++ Sbjct: 418 ERAQ-SGAAGEVANQDFNGSYGYLL 441 >gi|148258235|ref|YP_001242820.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1] gi|146410408|gb|ABQ38914.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1] Length = 497 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 163/491 (33%), Positives = 266/491 (54%), Gaps = 31/491 (6%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 +R + + + NP++A + A +D +I + +++G+ K +++ Sbjct: 17 LRTAMVRALSFSAAAALTLNPALAPVIAADYHPAVTAAAADGQIN-ARFLALGVGKSVVI 75 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI ++RD+ Sbjct: 76 DLPRDIKDVLVADPKIANAVVRSSQRAYIIGATVGQTNIVFFDAQGQQIAAYDIAVKRDL 135 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L++ + +S+I++E + D++VL G + ++Q+A EL+ Sbjct: 136 NGARAALKQLLPNSDIQIEGLGDSIVLSGSAASQIEAQQAGELAARLAGG---------- 185 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-AADFGGKFV 239 + KV+N + + G DQV LKVT+AEV+R ++KQ+G S + F ++ + Sbjct: 186 ADKVVNSITVRGRDQVMLKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFANSNPFTAYG 245 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S + S + L A+E A IRTLAEP LTAISG+SA+F +GG+ Sbjct: 246 SNLVSNNAINASFGSSVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPAGY 305 Query: 300 SSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------------- 341 S T V +G+ L+FTP VL+ GRI LR+ TEVSE Sbjct: 306 SCDPTTHVCTTQISFKKFGISLNFTPVVLAEGRISLRVMTEVSELSNENSITLSQAVTSS 365 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 VN+ +PS + R+A+TT+E+PSGG + +AGL++ +Q G+P L ++P+LG LFR+ Sbjct: 366 TVNSLTVPSIKTRRAETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGTLFRSR 425 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + +TE+ + TPF+V+ VA +DLSRPDD ++ D +A +N+IYG E Sbjct: 426 DYVNNQTELMVLVTPFVVRAVAQKDLSRPDDGFAAASDRQADLLGSINRIYGVPGRVEP- 484 Query: 462 GQNYKGAIGFI 472 G++Y+G GFI Sbjct: 485 GRSYRGTYGFI 495 >gi|170740621|ref|YP_001769276.1| type II and III secretion system protein [Methylobacterium sp. 4-46] gi|168194895|gb|ACA16842.1| type II and III secretion system protein [Methylobacterium sp. 4-46] Length = 501 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 145/460 (31%), Positives = 243/460 (52%), Gaps = 16/460 (3%) Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84 + A V++I E ++I + + +++ +P D ++V V++P A+ VV S Sbjct: 44 RAEKAPAIAAPVLSIGPQEAEIARRIDLTQGRSLVIDLPRDAKEVFVANPKVANAVVRST 103 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 R +++ G G ++ ++ +G+Q+ +LD+ + RD+ L TL + + V D+ Sbjct: 104 RKVFIIGVENGATSIFVMDAEGRQIASLDVTVGRDLNILRQTLATSLPSARFEVRPAGDS 163 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 ++L G V + ++Q+A++++ F+ + V+N + I G+DQV L+VT+ E Sbjct: 164 ILLSGTVNSATEAQQALDIANAFVG----IAGGTVTRGAVINNITIRGKDQVMLRVTVVE 219 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V R +LKQ G S + S + + G S + L A E Sbjct: 220 VSRTVLKQFGVSLSGSWSGLNLTNATQFALNGDRGLGNLIEGTINGGAGASLKATLKAFE 279 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLHFTP 320 +A R LAEPTLTAISG+SA FT+GG+ + S + +T YGVVL+FTP Sbjct: 280 QAGVSRILAEPTLTAISGESAKFTAGGEIAVPSGLSCTTANNCIPGITFKQYGVVLNFTP 339 Query: 321 TVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 VLS RI +R+ T+V+E G + +P + +RK++TT+EL SG TI+ AG Sbjct: 340 VVLSENRISIRVGTDVTEIDQQNAYSYNIGTTSTSVPGFTIRKSETTIELASGATIMTAG 399 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L++ + G+P L +P+LGALFR+ + R+ETE+ I TP++ K + ++ RPDD Sbjct: 400 LIQQKNKAAVMGLPALMNLPVLGALFRSRDYQRDETELMIMVTPYIAKAMDPGEVKRPDD 459 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 + D +A R N++YG A+ + + Y+G GFI Sbjct: 460 GFVDATDGQAILLGRFNRLYGVVGAAPLAPKAYRGKFGFI 499 >gi|116249981|ref|YP_765819.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254629|emb|CAK05703.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 501 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 223/487 (45%), Positives = 309/487 (63%), Gaps = 29/487 (5%) Query: 12 MSIFLFSSNPS----VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I + P+ + + + +++ IS +++ +GLNK +++ +P D Sbjct: 20 LAIGVSGMVPASFATLFAAGEARADSDSLVRISQTGSNAHRRLKLGLNKAVVVDLPEDAH 79 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE+ L Sbjct: 80 DILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNL 139 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182 RRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL ++S Sbjct: 140 RRFIRDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 199 Query: 183 ------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPS 227 +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + + +G + Sbjct: 200 SVALFAEGRQSSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQL 259 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 S +AD V G K + ++ T L+ALE+A ++TLAEPTLTAISGQ+A+F Sbjct: 260 GSPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATF 319 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 SGGQ LY T S G +V +YG+ L F P VLS GRI L+I+T VSEPV G Sbjct: 320 NSGGQQLYSTT-DSDGNVTVVPFNYGINLAFKPVVLSSGRISLQIKTNVSEPVAGSGNAT 378 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+E Sbjct: 379 ---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQE 435 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 TE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G Sbjct: 436 TELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHG 494 Query: 468 AIGFIYK 474 +IGFIYK Sbjct: 495 SIGFIYK 501 >gi|85705151|ref|ZP_01036251.1| bacterial type II/III secretion system protein [Roseovarius sp. 217] gi|85670473|gb|EAQ25334.1| bacterial type II/III secretion system protein [Roseovarius sp. 217] Length = 428 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 123/440 (27%), Positives = 208/440 (47%), Gaps = 33/440 (7%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 +N+ ++++ ++ +++P AD S RT+Y+ GK G+ + L G+ + N+D Sbjct: 1 MNRAVVVESDSPFAELSIANPAIADFSTLSDRTIYVLGKTPGRTTLSLFDGAGQLITNID 60 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 + + DI + L++ + I V +D +V+ G V + QRA++L+E + Sbjct: 61 VHVSTDIEEFKERLKQILPGEPIEVRSANDGIVISGTVSSSSRMQRALDLAERY------ 114 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 + ++V NL++++G+ QV LKV AE++R + K + SI + F Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKALSTSLSIDARGANQVGVFGGT 168 Query: 234 FGGKFVS---------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G F+ + +L ALE +RTLAEP LT Sbjct: 169 NTTNTLGGVLGSTAGTIPGANDNNGVFNFGFDVGSVEVGILLEALETKGVVRTLAEPNLT 228 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A+SGQ A F +GG+ V+ T+V +GV L+F P V+ G I L + VS Sbjct: 229 ALSGQEAKFLAGGEFPVP-VAQDNDTTTVEFKPFGVELNFVPRVVDDGIINLEMAAAVSS 287 Query: 339 PVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + +P++R R TTV L G + +AGLL+DD + +P L +P+L Sbjct: 288 IDTSNSLVSDGFSIPAFRRRDTSTTVALRDGESFAIAGLLQDDFRDNAGQVPWLGDVPVL 347 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV-NKIYG 453 GALFR++ + R +TE+ I + LV P L+ P D + + F RV N + Sbjct: 348 GALFRSADYQRSQTELVIIVSAHLVSPSRGEALALPTDRVKLPSEKDLFLNGRVANGVSD 407 Query: 454 PKEASEVEGQNYKGAIGFIY 473 EV Q++ G+ G++ Sbjct: 408 RGAVGEVAKQDFTGSYGYVM 427 >gi|254475652|ref|ZP_05089038.1| type II and III secretion system protein:Transport-associated [Ruegeria sp. R11] gi|214029895|gb|EEB70730.1| type II and III secretion system protein:Transport-associated [Ruegeria sp. R11] Length = 452 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 122/465 (26%), Positives = 223/465 (47%), Gaps = 33/465 (7%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 +P + A A + + G + + +N+ ++++ V ++ +++P+ AD+ S R Sbjct: 3 MPSAQGAWAEGLRVVKK--GTSSNLEVPMNRAVVVESDVPFSELSIANPSIADISSLSDR 60 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 T+Y+ GK+ G + G G+ + N+D+ + D++ + LR+ + I V +D + Sbjct: 61 TIYVLGKSPGPDHPHAFGCVGRLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGI 120 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 VL G+V + QRA++L+E + + +V NL+++ G QV LKV AE+ Sbjct: 121 VLSGVVSSSARLQRALDLAERY------------APDRVSNLMSVGGVQQVMLKVRFAEM 168 Query: 206 RRDILKQIGFQHSITG-------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 +R + K + + G ++ G + G F Sbjct: 169 QRTVSKSLSASLGVNGGNSVGVNGGTSTLNTQGALTNSLTGNIPAANDNTGAFVFGFNAG 228 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F +L ALE+ +RTLAEP L+A+SGQ A F +GG++ V+ G ++ + Sbjct: 229 AFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDGVITIEFKPF 287 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTI 368 G+ L+F P V+ I L ++ VS N + ++ R++ TTVE+ G + Sbjct: 288 GIELNFIPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRESVTTVEMRDGESF 347 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +AGL++D+ + +P + +P+LG+LFR++ + R +TE+ I + LV P LS Sbjct: 348 AIAGLIRDEFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLVTPTRGEALS 407 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 P D + F F V + ASEV Q++ G+ G++ Sbjct: 408 LPTDRIRPPSETDLFLFGNVAR-ERKGPASEVAKQDFNGSYGYVL 451 >gi|110636321|ref|YP_676529.1| type II and III secretion system protein [Mesorhizobium sp. BNC1] gi|110287305|gb|ABG65364.1| type II and III secretion system protein [Chelativorans sp. BNC1] Length = 516 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 191/495 (38%), Positives = 277/495 (55%), Gaps = 50/495 (10%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 P I + A + +V +++ +GLNK ++L +P D D+LV++P AD V + R Sbjct: 25 PVIIPSAARGEGVIEVSGAGTERLKLGLNKTLVLDLPSDAYDILVANPAVADAVTRTARR 84 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 +YLFGK VG+ N+ + G G+Q+ +D+ +ERD+A LE L+RFI +SNI VE+++D VV Sbjct: 85 IYLFGKQVGETNIFVFGAGGEQIARIDVAVERDVAGLEQYLKRFIPNSNIDVELINDNVV 144 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQY---------------------ANSSSKKVM 185 L G V T D+ RA +L+ F++ + K++ Sbjct: 145 LTGTVETPLDASRAAQLATIFVTGGEATTGQYSQTAAAPTDGGGVAISNPDSARQVSKIV 204 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 N+L I GEDQVTLKVT+AEV R ++KQ+G +GS G S D + Sbjct: 205 NMLQIIGEDQVTLKVTVAEVSRSVMKQLGVNMIGSGSLDGISWGAIVDSPYGLGAPASAS 264 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----------- 294 + L + L+A+E+A ++TL+EPTLTAISG+ A+F GG+ Sbjct: 265 QLA--LGGSLLQGYLNAMEQAGVMKTLSEPTLTAISGEKATFKVGGEFNLVTGQKVEQGD 322 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---------- 344 + V DYG+ L FTPTVLSPGRI L+++T VSEP + Sbjct: 323 ASKGQADQLTYEVEKIDYGIGLEFTPTVLSPGRISLKVRTSVSEPTFEGSFSLGSPSIGG 382 Query: 345 -----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + S R R ADTTVELPSGG++++AGL++DD++Q G+P LSKIPILG LFR Sbjct: 383 RFNSPGMNALSIRKRLADTTVELPSGGSMMIAGLVRDDVRQTINGLPGLSKIPILGTLFR 442 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + F R ETE+ I TP+L +PVA L+RPDD+++ D F RVN+IYG + + Sbjct: 443 SRDFVRNETELVIIITPYLARPVARTALARPDDNFNPPSDGAGIFLGRVNRIYGAMKTNL 502 Query: 460 VEGQNYKGAIGFIYK 474 +G+ Y G +G+IYK Sbjct: 503 PKGR-YHGVVGYIYK 516 >gi|90419764|ref|ZP_01227673.1| Flp pilus assembly protein, secretin CpaC (type II and type III secretion system) [Aurantimonas manganoxydans SI85-9A1] gi|90335805|gb|EAS49553.1| Flp pilus assembly protein, secretin CpaC (type II and type III secretion system) [Aurantimonas manganoxydans SI85-9A1] Length = 540 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 190/535 (35%), Positives = 279/535 (52%), Gaps = 70/535 (13%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 +R R +M+ + P LP +A V+N+ + I++GLNK ++ Sbjct: 15 LRARLRKLVVVMAAASTALAPLATTLP--AQAEQTVVNVRQG----SQSINLGLNKTKVI 68 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + D D+LV++P AD V R +Y+FGK +GQ N+++ +Q+ ++D+ IERDI Sbjct: 69 VLEADAHDILVANPAVADAVTRDARRIYIFGKQIGQTNIVVFDRQNRQIASIDLKIERDI 128 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY---- 176 LE T+R+++ S ++VEM++D VVL+G V+T QD+ + L+ F++ Sbjct: 129 NGLEATIRKYVPSSVVQVEMLNDNVVLNGTVQTPQDAAKVERLARLFVTGGEGTTGQYIQ 188 Query: 177 -------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 + +++NLL I GEDQVTLKVT+AEV+R ++KQ+G Sbjct: 189 QATASGGAGGGDGDVGFAQEDRRQSQIVNLLQIQGEDQVTLKVTVAEVQRSVVKQLGINS 248 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + G S + G + F L+A+E+A +RTLAEP+L Sbjct: 249 TAGKGVTYGQTDSPFALGKALSS--SMLASAGSIGGFDITAQLNAMEQAGVMRTLAEPSL 306 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV-----------------------------T 308 TAISG+ ASF GG+ S T T Sbjct: 307 TAISGEKASFKVGGEFTVPDAQSYDPGTPARREFQGYDGSGQAIYDTIPAEPPTRSIDKT 366 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMPSYRVRKADTT 359 +YG+ L FTP VLSPGRI L+I+T VSEP R R ADTT Sbjct: 367 RVEYGIGLDFTPVVLSPGRISLKIRTAVSEPTFEMPFNISGGKDGGVGTVGIRKRLADTT 426 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VELPSGG++V+AGL++D+++Q+ G P LSKIP+LG LFR+ F R ETE+ I TP+LV Sbjct: 427 VELPSGGSLVIAGLVRDEVRQVMSGFPGLSKIPVLGTLFRSRDFQRYETELVIIVTPYLV 486 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +PV + L+RPDD +++ D A F RVN++YG E G+ Y G +GFIYK Sbjct: 487 RPVPRQALARPDDGFALSSDGAANFLGRVNRVYGHMETKLPPGR-YHGVVGFIYK 540 >gi|299132286|ref|ZP_07025481.1| type II and III secretion system protein [Afipia sp. 1NLS2] gi|298592423|gb|EFI52623.1| type II and III secretion system protein [Afipia sp. 1NLS2] Length = 490 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 162/482 (33%), Positives = 259/482 (53%), Gaps = 23/482 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK--GKKISIGLNKVIILQVPVD 65 +S S+ + L P+ + V + S + + +G++K +++ +P D Sbjct: 13 IARALSFVAVSALILNSSLSPVLATDYQVASASTASADSLNARSLRLGISKSLVVDLPRD 72 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 V+DVLV+DP A+ VV S R Y+ G VGQ N+I DG+QM D+ + RD+ + Sbjct: 73 VKDVLVADPKIANAVVRSSRRAYIIGAAVGQTNIIFFDADGQQMAAYDVAVTRDLNGIRT 132 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 + + + S+I+VE + D VVL G ++Q+A EL+ + + ++ V+ Sbjct: 133 AIHQALPQSDIQVEGLGDGVVLTGSAANQAEAQQAYELAARLIGGP------SKANDLVV 186 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---EG 242 N + + G DQV LKVT+AEV+R+I+KQ+G S S F + Sbjct: 187 NNITVRGRDQVMLKVTVAEVQRNIVKQLGVDLSGKFSYGTAVVDFNNANQFSALGHALAP 246 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---- 298 + S + L A+E A +RTLAEP LTAISG+SA+F +GG+ T Sbjct: 247 DNAISTSFGSAPSVKATLRAMESAGVVRTLAEPNLTAISGESATFIAGGEFPIPTGITCQ 306 Query: 299 ----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPS 350 +SS S+ +G+ L+FTP VL+ GRI LR+ TEVSE V+ +PS Sbjct: 307 TAAGTSSNCQPSIAFKKFGISLNFTPVVLTEGRISLRVMTEVSEISNDNSLTVSGMTIPS 366 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R+A+TT+E+PSGG++ +AGL+++ +Q G+P L+++P+LG LFR+ F +TE+ Sbjct: 367 IKTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGLAQLPVLGTLFRSRDFINNQTEL 426 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 + TP++V+ VA +DLSRPDD ++ D + + +IYG +Y+G G Sbjct: 427 MVLVTPYVVRAVAQKDLSRPDDGFASASDPQTVLLGNITRIYGVPRREGQASSSYRGKYG 486 Query: 471 FI 472 FI Sbjct: 487 FI 488 >gi|85713505|ref|ZP_01044495.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A] gi|85699409|gb|EAQ37276.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A] Length = 477 Score = 342 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 163/486 (33%), Positives = 260/486 (53%), Gaps = 41/486 (8%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 + L P+ ++ V + + +S+G+ K +++ +P DV+DVLV+DP Sbjct: 1 MGAFTLNPALAPVFASDYRVSAATTGAKMHTQSLSLGIGKSVVVDLPRDVKDVLVADPKI 60 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 A+ VV S + Y+ G VGQ N+I G+Q+ DI + RD+ L L++ + ++ I Sbjct: 61 ANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQQISAYDIAVTRDLNGLRAALKQLLPNAAI 120 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 +V+ + D V+L G V + ++Q+A +L+ +KV+N + + G DQV Sbjct: 121 KVDGLGDGVMLSGWVSSPIEAQQAGDLAARLADGV----------QKVVNNIAVRGRDQV 170 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVLDRF 254 LKVT+AEV R I+KQ+G S + +F+ F ++ G Sbjct: 171 MLKVTVAEVARTIIKQMGIDLSANMNYGTAVVNFSNSNPFTALGRPLVSGNNLSGSAGLT 230 Query: 255 SF--------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + + L A+E A IRTLAEP LTAISG+SA+F SGG+ S Sbjct: 231 NLLPGQAGYPGVVPSVQATLRAMESAGVIRTLAEPNLTAISGESATFISGGEFPIPAGYS 290 Query: 301 STGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---------NAG 346 AT V +G+ L+FTP VL+ GRI LR+ TEVSE N+ Sbjct: 291 CDPATRVCLTQIRFKKFGISLNFTPVVLTEGRISLRVMTEVSELSTENAMTITQTIGNSL 350 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +PS R R+A+TT+E+PSGG++ +AGL+++ +Q G+P L+++P+LGALFR+ + Sbjct: 351 TVPSIRTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGLTQLPVLGALFRSRDYVNG 410 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 +TE+ + TP++V+ VA +DLSRPDD ++ D ++ +N+IYG E ++Y+ Sbjct: 411 QTELVVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSINRIYGAPGRVEPA-RHYR 469 Query: 467 GAIGFI 472 G GFI Sbjct: 470 GTYGFI 475 >gi|302037439|ref|YP_003797761.1| putative pilus assembly protein CpaC [Candidatus Nitrospira defluvii] gi|300605503|emb|CBK41836.1| putative Pilus assembly protein CpaC [Candidatus Nitrospira defluvii] Length = 485 Score = 342 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 135/487 (27%), Positives = 220/487 (45%), Gaps = 41/487 (8%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L + L + A A + D++ + +S+ K ++L P+ +++P Sbjct: 11 TLRGIGSGLFALFLVTVAQAHEVASPDIQTRVPRSLSLITGKSLVLDSPIPFSRASIANP 70 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 AD +V SP+ +Y+ GK G N+ L +G D+ + D+ L+ L + D Sbjct: 71 DIADTLVLSPKQLYVIGKAAGTTNLTLWDAEGSVYALYDLAVSPDLTRLKEHLHQLFPDE 130 Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 N ++V D + L G V + AV+++ET+ + +KV+NLL + G Sbjct: 131 NDLQVMAAHDRLTLTGTVSSATHVSEAVDVAETY------------ARQKVINLLRVGGL 178 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------PSKSFAADFGG 236 QV L+V +AE+ R +L+++G + PS + A G Sbjct: 179 HQVMLEVRVAEMERTLLRRLGVNLAAASGGQSFGVSSLKNLATVLPPTDPSAALVAGPVG 238 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 VS+ + ++ S+ + AL+ ++ LAEPTL A+SGQ A F +GG+ Sbjct: 239 LGVSQAVNALLRFQTGSTSWTGFIDALKEENLVKVLAEPTLVALSGQEAHFLAGGEFPIP 298 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYR 352 V + G T++ +G+ L+F P VLSP RI + + EVS+ +P+ Sbjct: 299 -VPQAFGVTTIQFKKFGIQLNFNPVVLSPTRISVTVAPEVSDLDFANGLSLQGFVVPAIT 357 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+A T VEL G + +AGLL+D +++ P+L IPILGALFR+S F + ETE+ I Sbjct: 358 TRRASTVVELEDGQSFAVAGLLRDTVRETVSKFPVLGDIPILGALFRSSSFQKNETELVI 417 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG------QNYK 466 TP LV PV +L P Y DD + R+ Sbjct: 418 IVTPHLVTPVTEAELPLPTGQYLEPDDVDFYLMGRLQSRKDKVRTPLPPATQLPFEDRLA 477 Query: 467 GAIGFIY 473 G +G + Sbjct: 478 GPVGHMM 484 >gi|157375508|ref|YP_001474108.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis HAW-EB3] gi|157317882|gb|ABV36980.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis HAW-EB3] Length = 483 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 113/435 (25%), Positives = 200/435 (45%), Gaps = 20/435 (4%) Query: 42 VEIGKGKKIS-IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 G + I I + K +L++ + V V +P D+ + +Y+ GK +G N++ Sbjct: 31 GPTGASRDIKHIPIFKSRVLKLKQAIHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIM 90 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + + + + +DI I D+ L+ L F+ + V+ +++ G +Q A Sbjct: 91 VWDKNEQLVDVIDIEITHDLNGLKTRLHEFLPGEKLGVQTSQGQLLISGQASNLQKMNTA 150 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 VEL++ + + + V+N++ + G+ QV L+V IAEV++++ +Q + I Sbjct: 151 VELAQAYADAASV----SKVKSTVLNMMTVGGDHQVMLEVVIAEVQKEVARQFDSKFFIF 206 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEP 275 A G + +G L ++ + LAEP Sbjct: 207 NKGDKGFIGTAGAGGTFDLDPAAAIDSRGFFARYLDGNLMMNFALDVAKQHGLAKVLAEP 266 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +TA+SGQSA F SGG+ V + G+T++ D+GV + F P+VL G+I L + Sbjct: 267 NVTAMSGQSAEFLSGGEFPIP-VPGTNGSTTIQYRDFGVGVKFVPSVLDSGQINLNLNVM 325 Query: 336 VSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE + +PS R TTVEL G TI ++GL+ D +++ + +P Sbjct: 326 VSEVSNANSVTLSGGSNTALVVPSIVKRTTATTVELADGQTIAISGLISDTLRENIDKLP 385 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 L IPILG LF + F ++E+ I TP LV+P + +S P D + + D + + Sbjct: 386 GLGDIPILGQLFTSKSFQSGQSELVILVTPRLVRPFNKKQISLPTDDFVLPSDMEFYLLG 445 Query: 447 RVNKIYGPKEASEVE 461 +++ +E E Sbjct: 446 KMSHKQSEQEKHETP 460 >gi|89053488|ref|YP_508939.1| type II and III secretion system protein [Jannaschia sp. CCS1] gi|88863037|gb|ABD53914.1| type II and III secretion system protein [Jannaschia sp. CCS1] Length = 466 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 224/461 (48%), Gaps = 29/461 (6%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 PI A A + + + E + + +N+ ++++ + ++ V++P AD+ S R+ Sbjct: 20 QPISGAQAQGLRVVEGE--STGTLRVPMNRAVVVEAEMLFAELSVANPAIADIATLSERS 77 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 +Y+ G+ G+ + L+G DG + N++I + D+A L LR I + V +D +V Sbjct: 78 IYVLGRAPGRTTMTLLGADGSLIANVEIQVVPDVAELRERLREIIPGEPVEVRTANDGIV 137 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L G V + RA+EL+E + + ++ NL+ + G+ QV L+V AE++ Sbjct: 138 LSGTVGSAFAVDRAMELAERY------------APGRISNLMMVGGQQQVMLQVRFAEMQ 185 Query: 207 RDILKQIGFQHSIT------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 R + +++ I G+ G + + G G V Sbjct: 186 RTVRQELSASLGIGSTGGNFGTSVGAGNLQGGTGFGTGNLPGGLDGRNGGIGVSFAAGGL 245 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +L ALE +RTLAEP LTA+SG +ASF +GGQ T S S G T + D+GV Sbjct: 246 QLSVLLEALESNGMVRTLAEPNLTALSGATASFLAGGQFPVPTESESGGTT-IEFVDFGV 304 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L FTPTV+ I L + E+S + P+ R A T VE+ G + +AGLL Sbjct: 305 QLDFTPTVVGDHVINLALDAEISSIGEIIATTGAPAINTRNASTVVEMRDGDSFAIAGLL 364 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +DD +P L +P+LGALFR++ ++R ++E+ I T LV PV L+ P D Sbjct: 365 QDDFTNSVAEVPWLGDLPVLGALFRSASYSRSQSELVIIITAHLVSPVNGEALALPTDRV 424 Query: 435 SVEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFIY 473 + +++ FF +V A +V Q++ G+ G++ Sbjct: 425 RIPTESELFFQGQVTGSSPRPGTAAGDVAQQDFSGSYGYVL 465 >gi|118589703|ref|ZP_01547108.1| pilus assembly protein [Stappia aggregata IAM 12614] gi|118437789|gb|EAV44425.1| pilus assembly protein [Stappia aggregata IAM 12614] Length = 483 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 172/473 (36%), Positives = 273/473 (57%), Gaps = 18/473 (3%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 ++ L A + + + ++I+ E G+ +++G+ + +++ + D D Sbjct: 22 LAATAVLLGGLMGVSAPVAQAEGNFPSQVHIAAGERATGRILNVGVGRSVVINLAEDAAD 81 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 VLVS+P AD V+ +PR +++ G GQ+ ++L G+++ + D+ +E+D + + +R Sbjct: 82 VLVSNPEIADAVLRTPRRIFVIGNTAGQSRLVLFSRSGRELASFDVRVEKDTSDITRIIR 141 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + I SNI E ++ +VVL G ++ ++Q+A +++ F +S+ +V+NL+ Sbjct: 142 KLIPGSNIFAESINGSVVLSGTAKSTLEAQQAADIAAKF--------QGAASASEVVNLI 193 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 ++AG+DQV LKVT+AEV R I+KQ+G Q T + ++ + +V Sbjct: 194 SVAGKDQVHLKVTVAEVERSIIKQLGVQFQGTIGIGNFTPFMSSLPNFTVNPTIVNQAVG 253 Query: 249 GV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 G S + AL+R IRTLAEPTLTAISG++ASF +GG+ G Sbjct: 254 GTQLTAGATSITAQVEALQREGVIRTLAEPTLTAISGENASFLAGGEFPIPIS-QRDGEL 312 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVE 361 SV +GV L FTP VLS GRI LR++TEVSE + + + +VR+A++T+E Sbjct: 313 SVEFKKFGVGLDFTPVVLSEGRISLRVKTEVSELSNDGAVSAGGITISALKVRRAESTME 372 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 LPSGGT+V+AGLL++ QQ EG+P L +IPILGALF++ F RE+TE+ + TP++V+P Sbjct: 373 LPSGGTLVMAGLLQESYQQAIEGVPGLMQIPILGALFKSRDFLREQTELAVFVTPYVVQP 432 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 VA+ L RPD + DA F NR+NKIY P A+ Y G +GFIYK Sbjct: 433 VAVSKLQRPDKNLMAPSDAGTIFLNRLNKIYNPTGAA--AEGTYHGQVGFIYK 483 >gi|316933039|ref|YP_004108021.1| type II and III secretion system protein [Rhodopseudomonas palustris DX-1] gi|315600753|gb|ADU43288.1| type II and III secretion system protein [Rhodopseudomonas palustris DX-1] Length = 478 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 148/480 (30%), Positives = 259/480 (53%), Gaps = 21/480 (4%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 R+ ++ ++ A+ + + +++G+ K +++ + Sbjct: 8 RSTRSLRGTAIALSTAAVLTLIPAWTAAHASDYRAAPAASGGLNAQSVALGIGKSMVIDL 67 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 P D++DVLV+DP A+ V+ S + Y+ G VGQ N++ G+Q+ DI + RD+ Sbjct: 68 PRDIKDVLVADPKIANAVIRSAQRAYIIGAAVGQTNIVFFDSTGRQIAAYDIAVTRDLNG 127 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + L++ + ++I+VE + + V+L+G V + ++Q+A +L+ + K Sbjct: 128 IRTALKQTLPTADIQVEGLGEGVMLNGSVASPIEAQQAFDLAARLVGDD----------K 177 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 KV+N + + G DQV LK+T+AEV+RDI+KQ+G S + +F Sbjct: 178 KVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGTAVVNFNNTNPFTQSGSA 237 Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + S L A+E A +RTLAEP LTAISG+ A+F +GG+ + Sbjct: 238 LVPNNALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAISGEPATFLAGGEFPVPSGV 297 Query: 300 SSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYR 352 + T SV +G++L+FTP V++ GRI L++ TEVSE +N+ +PS + Sbjct: 298 TCTNGVCTPSVVFKKFGILLNFTPVVMTAGRISLKVMTEVSEVSSDNAVVINSLSVPSIK 357 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ ++T+E+PSGG++ +AGL+++ +Q G+P +++PILG LFR+ + +TE+ + Sbjct: 358 TRRVESTLEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLPILGTLFRSRDYINRQTELMV 417 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 TP++V+ VA +DLSRPDD ++ D ++ +NK+YG SE + Y+G GFI Sbjct: 418 LVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSLNKLYGAPGRSEPA-RTYRGRFGFI 476 >gi|240139026|ref|YP_002963501.1| putative pilus assembly protein; putative precursor [Methylobacterium extorquens AM1] gi|240008998|gb|ACS40224.1| putative pilus assembly protein; putative precursor [Methylobacterium extorquens AM1] Length = 502 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 154/494 (31%), Positives = 252/494 (51%), Gaps = 33/494 (6%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEA----NAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ I ++ P +A + V+ I E +++ + + +I+ +P Sbjct: 10 LALLLISGAGLASAMLSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPR 69 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 D ++V V++P A+ VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L Sbjct: 70 DAKEVFVANPAVANAVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLR 129 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 +L++ + V+ V D++VL G V + ++Q+A++++ F+ + A + V Sbjct: 130 QSLQQSLPGGRFDVKAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--V 187 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------SKSFAADFGGKF 238 +N L I +DQV ++VT+ EV R +LKQ G S S+ P + + G Sbjct: 188 INNLTIRNKDQVMIRVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFPLTGSR 247 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-- 296 + + FSF+ L A E+A R LAEPTLTAISG+SA FT+GG+ Sbjct: 248 SPDANALTASVQTGGFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLS 307 Query: 297 ----------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-- 344 T S ++T YGV L FTP V++ RI +RI T+V + + Sbjct: 308 CSAASTVSIGTSVSQGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFT 367 Query: 345 ------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 +P R ++TTVEL SG T++ AGL++ + G+P L +PILGALF Sbjct: 368 YYLNDRPTPVPGTTKRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALF 427 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 R+ + R+ETE+ I TP++ +P+ R + RPDD + D +A R+NKIYG Sbjct: 428 RSRDYQRDETELMIMVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGG 487 Query: 459 EVEGQNYKGAIGFI 472 + G Y+G +GFI Sbjct: 488 TL-GPAYRGRVGFI 500 >gi|294140774|ref|YP_003556752.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12] gi|293327243|dbj|BAJ01974.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12] Length = 484 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 121/436 (27%), Positives = 207/436 (47%), Gaps = 21/436 (4%) Query: 42 VEIGKGKKISI-GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 G + I + + K IL + V V V +P D+ + +Y+ GK +G N++ Sbjct: 31 GPTGASRDIMLIPIFKSRILNLKQTVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIM 90 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + + + + +DI I D+ L++ L F+ + V+ +++ G +Q A Sbjct: 91 IWDENERLVDVIDIEITHDLNGLKLRLHEFLPGEKLGVQTSQGHLLISGQASNLQKMNTA 150 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 VEL++ + + ++ ++ V+N++ + G+ QV L+V IAEV+R++ +Q + I Sbjct: 151 VELAKAYADAASVSKVNST----VLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIF 206 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEP 275 G S S A + S +G D L ++ + LAEP Sbjct: 207 GQGSKLSGGTAGGGATFDLDPAAAISNRGFFARYINDNLLMNFALDVAKQNGLAKVLAEP 266 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +TA+SGQSA F SGG+ V + G+T++ D+GV + F PTVL G+I L + Sbjct: 267 NVTALSGQSAEFLSGGEFPIP-VPGTNGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVI 325 Query: 336 VSEPVIGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 VSE + +PS R TTVEL G TI ++GL+ D +++ + + Sbjct: 326 VSEVSNANSVSLSGGGSNATLIVPSIVKRTTSTTVELADGQTIAISGLINDTLRENIDKL 385 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P L IPILG LF + F ++E+ I TP LV+P + +S P D + + D + + Sbjct: 386 PGLGDIPILGQLFTSKSFKSGQSELIILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLL 445 Query: 446 NRVNKIYGPKEASEVE 461 +++ E SE Sbjct: 446 GKMSHKKQDSERSETP 461 >gi|254561621|ref|YP_003068716.1| pilus assembly protein [Methylobacterium extorquens DM4] gi|254268899|emb|CAX24860.1| putative pilus assembly protein; putative precursor [Methylobacterium extorquens DM4] Length = 502 Score = 339 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 153/480 (31%), Positives = 246/480 (51%), Gaps = 29/480 (6%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 P A + V+ I E +++ + + +I+ +P D ++V V++P A+ Sbjct: 24 MLPGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L +L++ + V Sbjct: 84 AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDV 143 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + V D++VL G V + ++Q+A++++ F+ + A + V+N L I +DQV + Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGP------SKSFAADFGGKFVSEGGDFSVKGVLD 252 +VT+ EV R +LKQ G S S+ P + + G + + Sbjct: 202 RVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFPLTGSRSPDANALTASVQTG 261 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------------TVSS 300 FSF+ L A E+A R LAEPTLTAISG+SA FT+GG+ T S Sbjct: 262 GFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVS 321 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYR 352 ++T YGV L FTP V++ RI +RI T+V + + +P Sbjct: 322 QGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTT 381 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I Sbjct: 382 KRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMI 441 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 TP++ +P+ R + RPDD + D +A R+NKIYG + G Y+G +GFI Sbjct: 442 MVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500 >gi|304392384|ref|ZP_07374325.1| type II and III secretion system protein [Ahrensia sp. R2A130] gi|303295488|gb|EFL89847.1| type II and III secretion system protein [Ahrensia sp. R2A130] Length = 544 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 184/498 (36%), Positives = 271/498 (54%), Gaps = 30/498 (6%) Query: 6 RTFFTMMSIFLFSSNPS-----------VAKLPPIKEANAAVINISDVEIGKGKKISIGL 54 R F S P + A+ I I+ K + +GL Sbjct: 48 RGFMAWSLATALSFAPVLHPIHEMGVAKAQTVAGELRADKNHIVITARNARVPKLVRLGL 107 Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114 +K +++ +P DVLV++P AD V+ + + +YLFGK VGQ NV + + G Q+ L+I Sbjct: 108 DKSLVVDLPSVANDVLVANPGVADAVMRTSQRLYLFGKQVGQTNVFVFDNGGNQIAALEI 167 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 LIERDI+ LE TL R I +S+I+ EM++D +VL G V T DS +A L++ F+ + Sbjct: 168 LIERDISGLEETLSRLIPNSDIQAEMINDNIVLTGRVSTPSDSTKAQSLAQIFVRGGEQT 227 Query: 175 QY--------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 ++ + +++NLL I GEDQV LKV+I E++R ++KQ+G S+T ++ G Sbjct: 228 TNPAQQSSIFGDAPTSEIVNLLKIDGEDQVMLKVSIVEIQRSVVKQLGITTSLTNAAEGG 287 Query: 227 SKSFAADFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G G S V + + + L L+ IR LAEPTLTAISG++ Sbjct: 288 FGFSTIAGGSVRNIAGAGLRGSANIVSGQNTLDAQLRVLDHTGMIRMLAEPTLTAISGEA 347 Query: 285 ASFTSGGQHLYKTV---SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-- 339 A F +GG + + + YGV L F PTVL+ GRI L+++TEV EP Sbjct: 348 AEFRAGGTYQAPQQIERDENGTSIEYEERQYGVSLQFIPTVLTEGRISLKLKTEVKEPSL 407 Query: 340 ---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + + R R A TTVELPSGG++ +AGL++DD++Q G P LSK+PI GA Sbjct: 408 HGSTGRSSDAGLFGTRERVASTTVELPSGGSMAIAGLIQDDLRQNISGFPGLSKLPIFGA 467 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 LFR+ F+R ETE+ I TP+LV+PVA L+ PD+ + + F RVN++YG K+ Sbjct: 468 LFRSREFHRSETELVIIVTPYLVRPVARAKLANPDEGFQPASEPAGIFMGRVNRVYGTKQ 527 Query: 457 ASEVEGQNYKGAIGFIYK 474 + +G+ Y G+IGFI K Sbjct: 528 GNLPKGR-YTGSIGFILK 544 >gi|260461949|ref|ZP_05810194.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259032196|gb|EEW33462.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 505 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 191/514 (37%), Positives = 294/514 (57%), Gaps = 49/514 (9%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MR + + F + + EA + + + +++ +GLNK +++ Sbjct: 1 MRLSGK--LPAIVAAAFGLLLVGTNVQGVVEAKSTQVTATT----ASQRVKLGLNKSVVI 54 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D D+LV++P+ AD V + R +YLFGK VG+ N+ + G +G+Q+ +LD+ +ERD+ Sbjct: 55 DLPSDAYDILVANPSVADAVTRTARRIYLFGKAVGETNIFVFGPNGEQIASLDLAVERDV 114 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA--- 177 A LE +RRFI S+I+VE+++D VVL G V T DS+RAV+L+ F+S Sbjct: 115 AGLEDYIRRFIPTSDIKVELLNDNVVLTGTVDTPLDSKRAVDLATIFVSGGEATTGQYSQ 174 Query: 178 ------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + K++NLL I G+DQVTLKVT+AEV R ++KQ+G Sbjct: 175 TAAGGSAQSGVDINNPDQERRTSKIVNLLQIIGDDQVTLKVTVAEVSRSVMKQLGVNMVG 234 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 +G S+G S +D + ++ + ++A+E++ ++TLAEPTLTA Sbjct: 235 SGGSNGISYGALSDPFTGLGKPLSNAGFS--INASGLQAYINAMEQSGVMKTLAEPTLTA 292 Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---------ATSVTTHDYGVVLHFTPTVLSPGRIGL 330 +SG+ A+F GG++ T S+ SV +YG+ L F P VLSPGRI L Sbjct: 293 VSGEKATFKVGGEYNMVTGVSANVSADNQTGLKTYSVDKIEYGIGLEFQPVVLSPGRISL 352 Query: 331 RIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 +++T VSEP + + S R R ADTTVELPSGG++++AGL++DD++Q Sbjct: 353 KVRTSVSEPTTEGSVSSSTSNTSVGMNALSLRKRLADTTVELPSGGSMMIAGLVRDDVRQ 412 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 G+P L+KIP+LGALFR+ F R ETE+ I TP+LVKPVA DL++PDD+++ D Sbjct: 413 AVNGLPGLTKIPVLGALFRSRDFVRNETELVIIITPYLVKPVARNDLAKPDDNFNAASDG 472 Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 A F +VN++YG + + G+ Y G +G+IYK Sbjct: 473 AAMFLGKVNRVYGTMQTDKPNGR-YHGVVGYIYK 505 >gi|90425197|ref|YP_533567.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB18] gi|90107211|gb|ABD89248.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB18] Length = 492 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 160/495 (32%), Positives = 263/495 (53%), Gaps = 35/495 (7%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R ++ + ++ L P A+ + + + +++G++K +++ Sbjct: 7 RPMRSPLARALWFSAAAALTINPALAPALAADYRPMAAAADGQLNARFLALGVSKSVVID 66 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 +P D++DVLV+DP A+ VV S + Y+ G +GQ N++ G Q+ DI + RD+ Sbjct: 67 LPRDIKDVLVADPKIANAVVRSAQRAYIIGAAIGQTNIVFFDAAGLQIAAYDIAVTRDLN 126 Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + +++ + ++IRVE V +V+L G V + ++Q+A +L+ + Sbjct: 127 GIRAAMKQTLPGADIRVEGVGVKSVMLTGSVSSPIEAQQAGDLAARLVDG---------- 176 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-----G 235 V+N + + G DQV LKVT+AEV+RDI+KQ+G + + +F G Sbjct: 177 PDNVVNSIAVRGRDQVMLKVTVAEVQRDIVKQLGVDLTARMNYGTAVVNFNNSNPFTAYG 236 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 VS + G S L A+E A +RTLAEP LTAISG+SA+F +GG+ Sbjct: 237 SNLVSGNATTASFGGGTTPSVTATLRAMESAGVVRTLAEPNLTAISGESATFVAGGEFPV 296 Query: 296 KTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------- 339 S T V +G+ L+FTP V+S GRI LR+ TEVSE Sbjct: 297 PAGYSCDPVTHVCTTQISFKKFGISLNFTPVVMSEGRISLRVMTEVSEISTDNSITLSQA 356 Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 N+ +PS + R+A+TT+E+PSGG++ +AGL+++ +Q G+P L+++P+LGAL Sbjct: 357 VSTTTTNSITVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAMNGLPGLAQLPVLGAL 416 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FR+ + TE+ + TP++V+ VA +DLSRPDD ++ D +A +N+IYG + Sbjct: 417 FRSRDYVNRNTELLVLVTPYVVRAVAQKDLSRPDDGFAAASDPQADLIGNINRIYGVRGR 476 Query: 458 SEVEGQNYKGAIGFI 472 +E NY+G GFI Sbjct: 477 TEPAK-NYRGTYGFI 490 >gi|328545279|ref|YP_004305388.1| Pilus assembly protein [polymorphum gilvum SL003B-26A1] gi|326415021|gb|ADZ72084.1| Pilus assembly protein [Polymorphum gilvum SL003B-26A1] Length = 470 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 168/479 (35%), Positives = 269/479 (56%), Gaps = 18/479 (3%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAA-VINISDVEIGKGKKISIGLNKVIILQV 62 R F T + L A + ++++ E + + +GL + +++ V Sbjct: 2 SGRRFATGLLAALAVLVTVSAMPAARADDGFPKTVHVAAGERATARLLRVGLGRSVVVNV 61 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 DV DVLVS+P AD VV S +++ G GQAN++L G +G+++ + ++ +E D + Sbjct: 62 AEDVADVLVSNPEIADAVVRSKNRVFVLGNKAGQANLVLFGRNGRELASFNLRVEPDTSD 121 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L L+R + +S+I E ++ VVL G + D+Q A +L+ F + + + Sbjct: 122 LSALLKRVLPNSDIHAESINGNVVLSGTAVSAADAQSAADLATRF-------GGSGAGAL 174 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFV 239 V+N++++AG+DQ+ LKVT+AEV R ++KQ+G S G+ G S + + Sbjct: 175 PVLNMISVAGKDQIQLKVTVAEVDRSVVKQLGVNLSGSIGIGNYRGTFNSASDFPVNPGI 234 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + + + + + AL+R IRTLAEPTLTAISG++ASF +GG+ VS Sbjct: 235 TSQATGGIGFLAGGTNVNAEIQALQRDGVIRTLAEPTLTAISGENASFLAGGEFPVP-VS 293 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRK 355 V +GV L FTP VLS GRI +R++TEVSE + + + +VR+ Sbjct: 294 QDNDTIGVEFKKFGVGLDFTPVVLSGGRISMRVKTEVSELTNDGAVTTGGIVISALKVRR 353 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A++TVELPSGGT+V+AGLLK+ +Q GIP L ++P+LGALF++ F R++TE+ + T Sbjct: 354 AESTVELPSGGTLVMAGLLKETYKQAVNGIPGLMQLPVLGALFKSRDFLRQQTELVVFVT 413 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 P++V PVA L+RPD ++ DA+ F NR+NK++G A Y G +G+IY+ Sbjct: 414 PYVVTPVAANALTRPDQNFLPPSDAETVFLNRINKLFGVSGAKVP--GTYHGQVGYIYE 470 >gi|167624205|ref|YP_001674499.1| type II and III secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167354227|gb|ABZ76840.1| type II and III secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 478 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 115/425 (27%), Positives = 201/425 (47%), Gaps = 19/425 (4%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 I + K +L + + V V +P+ AD+ + +Y+ GK +G N+++ + + Sbjct: 36 RIPIFKSRVLMLNGPIHRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKNEQLAR 95 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 +DI + D+ L+ L +F+ + V+ ++L G +Q AVEL++ + Sbjct: 96 IMDIEVTHDLNGLKTRLHQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEA 155 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 + + + KV+N++ I G+ QV L+V +AEV+R++ +Q + I S S Sbjct: 156 A----AGDRAPSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFLIFNQGSNLSGGV 211 Query: 231 AA-----DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 D G +G + + L ++ + LAEP +TA+SGQSA Sbjct: 212 IGGGGGFDPGSIGGVDGKGLFAQYINGDLMMNFALDVAKQNGLAKVLAEPNVTAMSGQSA 271 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341 F SGG+ V G T++ DYGV + F PTVL G+I L + VSE Sbjct: 272 EFLSGGEFPIP-VPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGF 330 Query: 342 -----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +PS R TTVEL G TI ++GL+ D +++ + +P L +P+LG Sbjct: 331 SISGNTSTSLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQ 390 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 LF + F ++E+ I TP LV+ +D+S P D + + D + + +++ + Sbjct: 391 LFTSKSFQSGQSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENTDD 450 Query: 457 ASEVE 461 S+ Sbjct: 451 TSDTP 455 >gi|163851903|ref|YP_001639946.1| type II and III secretion system protein [Methylobacterium extorquens PA1] gi|163663508|gb|ABY30875.1| type II and III secretion system protein [Methylobacterium extorquens PA1] Length = 502 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 152/480 (31%), Positives = 245/480 (51%), Gaps = 29/480 (6%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 A + V+ I E +++ + + +I+ +P D ++V V++P A+ Sbjct: 24 MLSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L +L++ + V Sbjct: 84 AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDV 143 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + V D++VL G V + ++Q+A++++ F+ + A + V+N L I +DQV + Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGP------SKSFAADFGGKFVSEGGDFSVKGVLD 252 +VT+ EV R +LKQ G S S+ P + + G + + Sbjct: 202 RVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFPLTGSRSPDANALTASVQTG 261 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------------TVSS 300 FSF+ L A E+A R LAEPTLTAISG+SA FT+GG+ T S Sbjct: 262 GFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVS 321 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYR 352 ++T YGV L FTP V++ RI +RI T+V + + +P Sbjct: 322 QGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTT 381 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I Sbjct: 382 KRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMI 441 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 TP++ +P+ R + RPDD + D +A R+NKIYG + G Y+G +GFI Sbjct: 442 MVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500 >gi|146342078|ref|YP_001207126.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278] gi|146194884|emb|CAL78909.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. ORS278] Length = 492 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 160/493 (32%), Positives = 263/493 (53%), Gaps = 35/493 (7%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 + +++ + L P+K A V K +S+G+ K +++ Sbjct: 12 KMGTALMRALAMSAAIALVLNPALAPVKAAEDRDAPTVSVGSSKVHYLSLGIGKSVVVDF 71 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 P DV+DVLV+DP A+ VV S + Y+ G +GQ NV+ +G+Q+ DI I+RD+ Sbjct: 72 PQDVKDVLVADPKIANAVVRSAKRAYIIGAAIGQTNVVFFDGEGQQVAAYDIAIKRDLNG 131 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + L + I ++++ V D V+L G V + ++Q+A E++ + + Sbjct: 132 VRQALSQSIPG--VKIDGVGDGVILTGSVSSPVEAQQAGEIAARLVGG----------AD 179 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GKF 238 KV+N + + G DQV LKV ++EVRR+I+KQ+G S + + +F GK Sbjct: 180 KVVNSIVVRGRDQVMLKVNVSEVRREIVKQLGIDLSASMTYGTAVVNFNQTNPFTAYGKS 239 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 ++ G S G + S + A+E A ++TLAEP LTAISG+SA+F +GG+ Sbjct: 240 LAAGNGLSAIGGGNLSSVSATMRAMETAGVVKTLAEPNLTAISGESATFIAGGEFPVPGG 299 Query: 299 SSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------------- 340 S TSV +G+ L+FTP VLS GRI LR+ TEVSE Sbjct: 300 YSCDPKTGLCSTSVMFKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAITLSYATSA 359 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 ++ +P+ R R+A+TT+E+PSGG++ +AGL+++ +Q G+P L+++P+LG LFR+ Sbjct: 360 NSASSVTIPAIRTRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGLNQLPVLGQLFRS 419 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 + ETE+ + TP++V+ VA ++LSRPDD ++ D+++ R+N++YG + Sbjct: 420 QDYVNNETELMVLVTPYVVRAVAQKELSRPDDGFAPATDSESALLGRMNRLYGVAAKVDA 479 Query: 461 EGQNYKGAIGFIY 473 G GFI Sbjct: 480 VTGQPAG-FGFII 491 >gi|157961834|ref|YP_001501868.1| type II and III secretion system protein [Shewanella pealeana ATCC 700345] gi|157846834|gb|ABV87333.1| type II and III secretion system protein [Shewanella pealeana ATCC 700345] Length = 478 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 124/472 (26%), Positives = 210/472 (44%), Gaps = 33/472 (6%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 R + + L + + A P N + I + K +L + Sbjct: 3 FLRHCSIVCLLALLQLSTAYAGGPTAGARNDVQL--------------IPIFKSRVLMLK 48 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V V V +P+ AD+ + +Y+ GK +G NV++ + + +DI + D+ L Sbjct: 49 GPVHRVSVGNPSIADIKLLPNDELYILGKQLGSTNVMIWDKNEQLARIMDIEVTHDLNGL 108 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + L +F+ + V+ ++L G +Q AVEL++ + + + K Sbjct: 109 KTRLYQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAA----AGGQAPSK 164 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 V+N++ I G+ QV L+V +AEV+R++ +Q + I S S GG G Sbjct: 165 VLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGSNLSGGLVGGGGGFDPGSIG 224 Query: 244 DFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 KG+ L ++ + LAEP +TA+SGQSA F SGG+ V Sbjct: 225 GIDAKGLFAQYINGDLMMNFALDIAKQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIP-V 283 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---------GVNAGDMP 349 G T++ DYGV + F PTVL G+I L + VSE +P Sbjct: 284 PGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGFAISGNTSTTLVVP 343 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 S R TTVEL G TI ++GL+ D +++ + +P L +P+LG LF + F ++E Sbjct: 344 SLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQSGQSE 403 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + I TP LV+ +D+S P D + + D + + +++ ++S+ Sbjct: 404 LVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENSDDSSDTP 455 >gi|241518288|ref|YP_002978916.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862701|gb|ACS60365.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 512 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 203/462 (43%), Positives = 287/462 (62%), Gaps = 23/462 (4%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 VI++++ + + +SIGLNK +I+++P D D++VSDP +D +V + RT++LFGK Sbjct: 54 AENVISVTETGVNVTRHVSIGLNKTLIVELPQDAHDIVVSDPGVSDAIVRATRTIFLFGK 113 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 VGQ N+ ++ + + ++N+DI +ERDIA LE LRR I D+ I+VE++SD +VL G VR Sbjct: 114 KVGQTNIFILDANKRPIVNIDIAVERDIAGLETDLRRLIPDAAIKVEIISDNIVLTGTVR 173 Query: 153 TIQDSQRAVELSETFLSQSGRNQ-----------------YANSSSKKVMNLLNIAGEDQ 195 + QDS +A +L+ F+ + K++NLL IA +DQ Sbjct: 174 SAQDSAQAADLASAFVKGGEATTRTQSASSGGSQGSVALVAEDRQESKIINLLRIAADDQ 233 Query: 196 VTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 V LK+TIAEV+R+ILKQ+GF + + GS+ + + D G G Sbjct: 234 VMLKMTIAEVKREILKQLGFDNELKNAGGSTIAQLGTASTDATTATSGGGLSALFSGSFG 293 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + T L+ALE+A +RTLAEPTLTA+SGQSASF +GG+ LY G T+ T + Y Sbjct: 294 KHGLSTTLNALEQAKVVRTLAEPTLTAVSGQSASFQAGGEVLYSNT-DRDGNTTQTPYSY 352 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G+ L F P VL+ GRI L+I TEVSEPV ++ P+Y R TTVELPSGG+I LAG Sbjct: 353 GISLSFKPIVLTSGRISLQISTEVSEPVTSISGSS-PTYGKRSTSTTVELPSGGSIALAG 411 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L++D+ + G P+L+KIP GALFR + F R ETE+ I ATP+LV+PVA +DL+RPDD Sbjct: 412 LIRDNFNRTSNGTPVLNKIPGFGALFRQTSFERNETELVIIATPYLVRPVAAKDLNRPDD 471 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 + S DDA +R+NK+YG + E Q Y G +GFIYK Sbjct: 472 NLSPADDASQGLLDRINKLYGNGKTLEPTAQ-YHGTVGFIYK 512 >gi|188581660|ref|YP_001925105.1| type II and III secretion system protein [Methylobacterium populi BJ001] gi|179345158|gb|ACB80570.1| type II and III secretion system protein [Methylobacterium populi BJ001] Length = 502 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 154/482 (31%), Positives = 245/482 (50%), Gaps = 29/482 (6%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 S+ A P + V+ I E +K+ + + +I+ +P D ++V V++P Sbjct: 22 VSTLSGPASAQPGLPGASPVLTIGPNETAVSRKVELSKGRSLIIDLPRDAKEVFVANPAV 81 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 A+ VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L +L++ + Sbjct: 82 ANAVVRSSRKLFLIGIDNGATSIFVMDAEGRQIAALDVTIARDINVLRQSLQQSLPSGRF 141 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V+ V D++VL G V + ++Q+A++++ F+ + A + V+N L I +DQV Sbjct: 142 DVKAVGDSLVLSGSVNSASEAQQALDIANAFVGIAAGGGVATRGT--VINNLTIRNKDQV 199 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------SEGGDFSVKGV 250 ++VT+ EV R +LKQ G S ++ P F + + Sbjct: 200 MIRVTVVEVARTVLKQFGISTSGNWAALNPLGGNVFTNNTGFPLTGSRSPDANAITASVQ 259 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------------TV 298 FSF L A E+A R LAEPTLTAISG+SA FT+GG+ T Sbjct: 260 TGGFSFRATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCAAASTVSIGTS 319 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPS 350 S ++T YGV L FTP V++ RI +RI T+V + + +P Sbjct: 320 ISQGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPG 379 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ Sbjct: 380 TTRRSSETTVELASGATMMTAGLIQQKNRGAISGLPGLMNLPILGALFRSRDYQRDETEL 439 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 I TP++ +P+ R + +PDD Y D +A R+NKIYG + G Y+G +G Sbjct: 440 MIMVTPYIAQPMEARQVQKPDDGYVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVG 498 Query: 471 FI 472 FI Sbjct: 499 FI 500 >gi|319785608|ref|YP_004145084.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171496|gb|ADV15034.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 506 Score = 335 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 181/503 (35%), Positives = 289/503 (57%), Gaps = 43/503 (8%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 + + ++ + ++ + N +++ +GLNK +++ +P D D+LV Sbjct: 7 LPAIVAAAFGLLLVGTNVQGSVVEAKNAQVTASTATQRVKLGLNKSVVIDLPSDAYDILV 66 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 ++P AD V + R +YLFGK VG+ N+ + G +G+Q+++LD+ +ERD+A LE +RRF+ Sbjct: 67 ANPAVADAVTRTARRIYLFGKAVGETNIFVFGPNGEQIVSLDLAVERDVAGLEDYIRRFL 126 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY--------------- 176 S ++VE+++D VVL G V T D++RA +L+ F+S Sbjct: 127 PTSAVKVELLNDNVVLTGTVDTPLDAKRAEQLANMFVSGGEATTGQYSQTAAGGSAQSGV 186 Query: 177 ------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 + +++NL+ I G+DQVTLKVT+AEV R ++KQ+G +G S+G S Sbjct: 187 DINNPDQERRTSQIVNLIQIIGDDQVTLKVTVAEVSRSVMKQLGVNMVGSGGSNGISYGA 246 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 +D + + + + + ++A+E++ ++TLAEPTLTA+SG+ A+F G Sbjct: 247 ISDNFTGLGKQLSNSGFQ--IGASGLQAYVNAMEQSGVMKTLAEPTLTAVSGEKATFKVG 304 Query: 291 GQHLYKTVSSSTGATS---------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 G++ T S+ + V +YG+ L F P VLSPGRI L+++T VSEP Sbjct: 305 GEYNMVTGVSANVSQDNQTGLKTYSVEKIEYGIGLEFQPVVLSPGRISLKVRTSVSEPTT 364 Query: 342 GVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + + S R R ADTTVELPSGG++++AGL++DD++Q G+P L+KI Sbjct: 365 EGSVSFSSGVTSPGMNALSLRKRLADTTVELPSGGSMMIAGLVRDDVRQAVNGLPGLTKI 424 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P+LGALFR+ F R ETE+ I TP+LVKPVA DL++PDD+++ D F RVN++ Sbjct: 425 PVLGALFRSRDFVRNETELVIIITPYLVKPVARNDLAKPDDNFNAASDGAGMFLGRVNRV 484 Query: 452 YGPKEASEVEGQNYKGAIGFIYK 474 YG + + G+ Y G +GFIYK Sbjct: 485 YGTMQTDKPNGR-YHGVVGFIYK 506 >gi|115525749|ref|YP_782660.1| type II and III secretion system protein [Rhodopseudomonas palustris BisA53] gi|115519696|gb|ABJ07680.1| type II and III secretion system protein [Rhodopseudomonas palustris BisA53] Length = 486 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 152/489 (31%), Positives = 261/489 (53%), Gaps = 33/489 (6%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R ++ S P+ + A +++ +++G++K +++ Sbjct: 11 RRFAVRSLAWTAVAALSLQPAALPVI----AADYRPAVANEGQMNAHFLALGISKSVVID 66 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 +P D++DVLV+DP A V+ S + Y+ G +VGQ N++ G+Q+ DI + RD+ Sbjct: 67 LPRDIKDVLVADPKIATAVIRSAQRAYIIGASVGQTNIVFFDAAGQQIAAYDIAVTRDLN 126 Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + L++ + +++IRVE V V+L G V + ++Q+A E++ Sbjct: 127 GIRAALKQTLPNTDIRVEGVGPKGVLLSGSVSSPVEAQQAGEVAARLAEG---------- 176 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 ++ V+N + + G DQV LKVT+AEV+RDI+KQ+G S + + +F Sbjct: 177 AENVVNSIAVRGRDQVMLKVTVAEVQRDIIKQMGIDLSASMTYGTAVVNFNNTNPFTAFG 236 Query: 241 ---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G+ + L A+E A +RTLAEP LTAISG+SA+F +GG+ + Sbjct: 237 RQLVTGNSLATSFGGGPTVTATLRAMESAGVVRTLAEPNLTAISGESATFIAGGEFPVPS 296 Query: 298 VSSST-----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------- 344 + G T + +G+ L+FTP V++ GRI LR+ TEVSE + Sbjct: 297 GYNYDPVTHVGTTQIAFKKFGISLNFTPVVMTEGRISLRVMTEVSELSNDNSITLTQSNG 356 Query: 345 -AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +PS + R+A+TT+E+PSGG++ +AGL+++ +Q G+P +++IP+LG+LFR+ + Sbjct: 357 DGLTVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGMAQIPVLGSLFRSRDY 416 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 +TE+ + TP++V+ VA +DLSRPDD ++ D + +N+IYG + + Sbjct: 417 VNRQTELMVLVTPYVVRAVAQKDLSRPDDGFAAVSDPQGDLLGSINRIYGVPGKPGPD-R 475 Query: 464 NYKGAIGFI 472 NY+G GFI Sbjct: 476 NYRGTYGFI 484 >gi|212635453|ref|YP_002311978.1| Flp pilus assembly protein [Shewanella piezotolerans WP3] gi|212556937|gb|ACJ29391.1| Flp pilus assembly protein [Shewanella piezotolerans WP3] Length = 479 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 116/413 (28%), Positives = 195/413 (47%), Gaps = 20/413 (4%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 I + K +L + V V V +P+ AD+ + +Y+ GK +G N+++ D + Sbjct: 37 IPIFKSRVLMLEGPVHRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKDEQLSKI 96 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 +DI + D+ L+ L F+ + V+ ++L G +Q AVEL++ + + Sbjct: 97 MDIEVTHDLNGLKTRLHEFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAA 156 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------G 225 ++ +V+N++ I G+ QV L+V +AEV+R++ +Q + I Sbjct: 157 ----AGGTAPSRVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGDHLAGGVI 212 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 GG +G + V L ++ + LAEP +TA+SGQSA Sbjct: 213 GGGGGGFAPGGIGGVDGKGLFAQYVNGDLLMNFALDVAKQNGLAKVLAEPNVTAMSGQSA 272 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341 F SGG+ V G T+V DYGV + F PTVL G+I L + VSE Sbjct: 273 EFLSGGEFPIP-VPGENGNTTVEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGF 331 Query: 342 -----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +PS R TTVEL G TI ++GL+ D +++ + +P L +P+LG Sbjct: 332 TISGNTSTSLVVPSLTKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQ 391 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 LF + F ++E+ I TP LV+P D+S P D + + D + + +++ Sbjct: 392 LFTSKSFQNGQSELVILVTPRLVRPFNRNDISLPTDGFVLPSDVEFYLLGKLS 444 >gi|307943145|ref|ZP_07658490.1| type II and III secretion system protein [Roseibium sp. TrichSKD4] gi|307773941|gb|EFO33157.1| type II and III secretion system protein [Roseibium sp. TrichSKD4] Length = 482 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 157/471 (33%), Positives = 261/471 (55%), Gaps = 18/471 (3%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 I L S V + + A ++++ E + +S+G+ + +I+ V DVLV Sbjct: 22 AGIALVLSLAGVPEPAAAQGAFEKRVHVASGERVSSRLLSVGVGRSVIIDTAEAVADVLV 81 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 S+P AD VV +P +++ G GQAN++L G+++ + ++ +E D + L +++++ Sbjct: 82 SNPGVADAVVRTPNRIFVLGNKAGQANLVLFSRTGRELASFNLRVEPDTSDLVRFIQKYV 141 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 SNI + ++ ++L G D+QRA +L+ + + ++N++ + Sbjct: 142 PGSNIEAQSLNGNIILSGTAANAADAQRAADLAARYAGDGKKATD-------ILNMITVD 194 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSV 247 GEDQV LKVT+AEV R+++KQ+G Q + FA + G + + Sbjct: 195 GEDQVHLKVTVAEVDREVIKQLGVQLNGEIKIGNFGFGFANDTSFNAGTSVAQQTTRLAG 254 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + V + + AL+R ++TLAEPTLTAISG++ASF +GG+ T V Sbjct: 255 ELVSGGTTIGAEVKALQREGIVKTLAEPTLTAISGENASFLAGGEFPIPISQDGNEVT-V 313 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELP 363 +GV L FTP VLS GRI L+I TEVSE + + +P+ +VR+A++T+ELP Sbjct: 314 EFKKFGVGLDFTPIVLSGGRISLKITTEVSELSSDGAVNIGTLTIPALKVRRAESTLELP 373 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SGGT+V+AGLL++ +Q G+P L +P+LG+LF++ F R +TE+ + TP++V P+A Sbjct: 374 SGGTLVMAGLLQESYRQSVNGVPGLMNLPVLGSLFKSRDFLRSQTELVVFVTPYIVNPIA 433 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 + RPD + + +D++ F NR+NKIY + Y G +GFIYK Sbjct: 434 ASKVQRPDKNLAPANDSETLFLNRLNKIYRANGQNAQAP--YHGQVGFIYK 482 >gi|218516388|ref|ZP_03513228.1| pilus assembly secretion protein [Rhizobium etli 8C-3] Length = 436 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 215/441 (48%), Positives = 288/441 (65%), Gaps = 25/441 (5%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 +NK +++ +P D D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G++++NLD Sbjct: 1 MNKAVVVDLPEDAHDILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLD 60 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 I IERD++ LE LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL Sbjct: 61 IEIERDVSGLEANLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEA 120 Query: 174 NQYANSSSK-----------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 ++S +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF Sbjct: 121 TTRTETASGTGGDSAVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFD 180 Query: 217 H---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 + + +G + + +AD V G K + ++ T L+ALE+A +RTLA Sbjct: 181 NLISNSSGMTVAQLGTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLA 240 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 EPTLTAISGQ+A+F SGGQ LY T + G +V +YG+ L F P VLS GRI L I+ Sbjct: 241 EPTLTAISGQAATFNSGGQQLYSTT-DNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIK 299 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 T VSEPV G Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+ Sbjct: 300 TNVSEPVAGSGNAT---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPL 356 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG Sbjct: 357 LGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYG 416 Query: 454 PKEASEVEGQNYKGAIGFIYK 474 +EA + Q + G+IGFIYK Sbjct: 417 RREAPVADAQ-FHGSIGFIYK 436 >gi|13474660|ref|NP_106229.1| exporter protein, cpaC [Mesorhizobium loti MAFF303099] gi|14025415|dbj|BAB52015.1| exporter protein; CpaC [Mesorhizobium loti MAFF303099] Length = 471 Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 181/473 (38%), Positives = 279/473 (58%), Gaps = 43/473 (9%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 +++ +GLNK +++ +P D D+LV++PT AD V + R +YLFGK+VG+ N+ + Sbjct: 2 TATTATQRVKLGLNKSVVIDLPSDAYDILVANPTVADAVTRTARRIYLFGKSVGETNIFV 61 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G +G+Q+ +LD+ +ERD+A LE +RRF+ S+++VE+++D VVL G V T D++RAV Sbjct: 62 FGPNGEQIASLDLAVERDVAGLEDYIRRFLPTSDVKVELLNDNVVLTGTVDTPLDAKRAV 121 Query: 162 ELSETFLSQSGRNQYA---------------------NSSSKKVMNLLNIAGEDQVTLKV 200 +L+ F+S K++NLL I G+DQVTLKV Sbjct: 122 DLATIFVSGGEATTGQYSQTAAGGSAQGGVDINNPDQERRVSKIVNLLQIIGDDQVTLKV 181 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 T+AEV R ++KQ+G G S+G S +D + + + + Sbjct: 182 TVAEVSRSVMKQLGVNMVGNGGSNGISYGALSDNFTGLGKQLSHSGFN--IGNSALMAYI 239 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------GATSVTTHD 311 +A+E++ ++TLAEPTLTA+SG+ A+F GG++ T S ++ + Sbjct: 240 NAMEQSGVMKTLAEPTLTAVSGEKATFKVGGEYNLLTGVSQNVSSDNQTGLTTYTINKIE 299 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVE 361 YG+ L F P VLSPGRI L+++T VSEP + +M S R R ADTTVE Sbjct: 300 YGIGLEFQPVVLSPGRISLKVRTSVSEPTTEGSVALSNGVTSPGANMLSLRKRLADTTVE 359 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 LPSGG++++AGL++DD++Q G+P L+KIP+LGALFR+ F R E+E+ I TP+L KP Sbjct: 360 LPSGGSMMIAGLVRDDVRQAVNGLPGLTKIPVLGALFRSRDFVRNESELVIIITPYLAKP 419 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 VA DL++PDD+++ D A F +VN++YG + + G+ Y G +G+IYK Sbjct: 420 VARNDLAKPDDNFNPASDGAANFLGKVNRVYGTMQTDKPNGR-YHGVVGYIYK 471 >gi|218530654|ref|YP_002421470.1| type II and III secretion system protein [Methylobacterium chloromethanicum CM4] gi|218522957|gb|ACK83542.1| type II and III secretion system protein [Methylobacterium chloromethanicum CM4] Length = 499 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 148/477 (31%), Positives = 247/477 (51%), Gaps = 26/477 (5%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 A + V+ I E +++ + + +I+ +P D ++V V++P A+ Sbjct: 24 MLSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L +L+ + V Sbjct: 84 AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQLSLPGGRFDV 143 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + V D++VL G V + ++Q+A++++ F+ + A + V+N L I +DQV + Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGP--------SKSFAADFGGKFVSEGGDFSVKGV 250 +VT+ EV R +LKQ G + ++ P + + G + +G S Sbjct: 202 RVTVVEVARTVLKQFGINVTGNWAALNPLSPTGNVLTNTTPFPLTGAYSPDGNALSASIR 261 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGAT 305 S + L A E+A R LAEPTLTAISG+SA FT+GG+ + V+ + Sbjct: 262 SGGVSLQATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPSNCSAGVAGAACTV 321 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRK 355 ++ YGV L FTP V++ RI +R+ T+V+E + +P+ R Sbjct: 322 ALEFKPYGVSLAFTPIVMAENRISIRVATDVTELDRQNSYSFSFPGSNRVTPVPATTRRS 381 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I T Sbjct: 382 SETTVELASGATMMTAGLIQQKSRASISGLPGLMNLPILGALFRSRDYQRDETELMIMVT 441 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 P++ +P+ R + RPDD + D +A R+NKIYG + G Y+G +GFI Sbjct: 442 PYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 497 >gi|328953626|ref|YP_004370960.1| type II and III secretion system protein [Desulfobacca acetoxidans DSM 11109] gi|328453950|gb|AEB09779.1| type II and III secretion system protein [Desulfobacca acetoxidans DSM 11109] Length = 503 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 138/493 (27%), Positives = 213/493 (43%), Gaps = 46/493 (9%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 + ++ L + +V P + A A + + D ++ + I + + + +L+ + + Sbjct: 21 LAAMVLILGSAAVYSPPSVLAAQALLERVKDEDLE--QVIRLRVGRSKVLRTSFTISRIS 78 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V+DP AD+++ S R +Y+ G G N+ L G + + + +E D++ L+ L + Sbjct: 79 VADPEVADIIMISEREVYINGNAPGVTNISLWGK--RSFSSAKVTVEADVSLLKEKLFKV 136 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + I VE DTVVL G V + A+ L+ F KV+NLL+I Sbjct: 137 LPKEKIAVEAAEDTVVLSGEVSGPVAQETAISLATAFSGGKK---------DKVVNLLHI 187 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------------G 235 G QV + V +AE+ R + K++G + + + + Sbjct: 188 GGVQQVMVAVRVAEINRSVGKEMGINFAYSNKAGNFGATLLNSLSILKNIDRNLDSVTAP 247 Query: 236 GKFVSEGG-----------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G V+ G + G+ F + L++ R LAEP L SGQ Sbjct: 248 GVLVNPGVTTSSQQFSSSVNAVFGGLYGSFFWTAFFDVLKKNGLGRILAEPNLVTTSGQE 307 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-- 342 ASF +GG+ V S G TS+ +GV L FTPTVL +I LRI EVSE Sbjct: 308 ASFLAGGEFPIP-VPSGLGTTSIDYKKFGVGLVFTPTVLDNDKIALRINPEVSELDFSSQ 366 Query: 343 ----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 VN +P +VR+ T VE+ G T+ +AGLL D + + PLL +PILG LF Sbjct: 367 TTVVVNNFIVPGLKVRRTTTQVEMKDGQTLAIAGLLSDQHRNVVNKYPLLGDLPILGVLF 426 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 R+S F + ETE+ I TP LVK P D Y D + + R + Sbjct: 427 RSSSFQKSETELVILVTPHLVKSQPPGPHRLPTDKYIEPTDLEFYLLGRSEGRDKKPQPP 486 Query: 459 EVEGQNYKGAIGF 471 GF Sbjct: 487 AASPAREITPPGF 499 >gi|209886530|ref|YP_002290387.1| type II and III secretion system protein [Oligotropha carboxidovorans OM5] gi|209874726|gb|ACI94522.1| type II and III secretion system protein [Oligotropha carboxidovorans OM5] Length = 486 Score = 332 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 162/482 (33%), Positives = 267/482 (55%), Gaps = 28/482 (5%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 +S+F+ S PS A ++A+ + + + + +G++K +++ +P DV+D Sbjct: 13 AAAISVFILGSAPSSALATDYSASSASTSHADSLN---ARALRLGISKSLVVDLPRDVKD 69 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 VLV+DP A+ VV S R Y+ G +VGQ N+I DG+QM D+ + RD+ + + Sbjct: 70 VLVADPKIANAVVRSSRRAYIIGASVGQTNIIFFDADGQQMAAYDVAVTRDLNGIRTAIH 129 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + + S+I+VE + D VVL G ++Q+A EL+ + + + + ++N + Sbjct: 130 QALPQSDIQVEGLGDGVVLSGTAANQAEAQQAYELAARLIGGP------SKAGELIVNNI 183 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAADFGGKFVSEGG 243 + G DQV L+VT+AEV+R I+KQ+G S + + + + G + V Sbjct: 184 AVRGRDQVMLRVTVAEVQRSIIKQLGVDLSGSFNYGTAVVDFNNTNTFTALGRRLVDNNA 243 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + G S + L A+E A IRTLAEP LTAISG+SA+F +GG+ T + Sbjct: 244 VSAAFGNGTVPSVKATLRAMESAGVIRTLAEPNLTAISGESATFIAGGEFPIPTGITCQT 303 Query: 304 ---------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPS 350 S+ +G+ L+FTP VL+ GRI LR+ TEVS + I V+ +PS Sbjct: 304 AAGGSTGPCQPSIAFKKFGISLNFTPVVLTEGRISLRVMTEVSEVSSDNSISVSGLTIPS 363 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R+A+TT+E+PSGG++ +AGL++D +Q G+P L+++P+LG LFR+ F +TE+ Sbjct: 364 IKTRRAETTLEIPSGGSMAMAGLIQDQTKQAINGLPGLAQVPVLGTLFRSRDFINNQTEL 423 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 + TP++V+ VA +DLSRPDD ++ D ++ + +IYG +Y+G G Sbjct: 424 MVLVTPYVVRAVAQKDLSRPDDGFASASDPQSVLLGNITRIYGVPRRGGP-VASYRGKYG 482 Query: 471 FI 472 FI Sbjct: 483 FI 484 >gi|46580524|ref|YP_011332.1| type II/III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|120602159|ref|YP_966559.1| type II and III secretion system protein [Desulfovibrio vulgaris DP4] gi|46449943|gb|AAS96592.1| type II/III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|120562388|gb|ABM28132.1| type II and III secretion system protein [Desulfovibrio vulgaris DP4] gi|311234263|gb|ADP87117.1| type II and III secretion system protein [Desulfovibrio vulgaris RCH1] Length = 484 Score = 332 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 204/457 (44%), Gaps = 41/457 (8%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 ++ + K ++ V + ++D A VVV SP+ +Y+ GK G + L Sbjct: 38 AASSELQVATGKSSVVSTSRPVGRLAIADEAIAGVVVLSPQQVYVTGKKAGTTTLTLWDG 97 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 G + D+ + DIA L+ L R + N I V V+DTV L G VR+ A+++ Sbjct: 98 GGAVIGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVNDTVTLAGTVRSAASMTTAMDM 157 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + + + KV NL+ + G QV L+V +AE+RR++++++G + Sbjct: 158 ARLY------------APDKVTNLMQVGGVHQVMLEVKVAEMRRNVMERLGIDLTYAWRG 205 Query: 224 SGPSKSFA-------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 A G +S + + + + S L L++ ++ Sbjct: 206 DFIFGMLNQLFTLDSQKGVVDAGPSGAVLSPNVNGAFRITSGQVSIMGFLDVLKQNGLVK 265 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEPTL SG+ A F +GG+ V G ++ ++GV L F PTV+ GRI + Sbjct: 266 VLAEPTLVCRSGEKAEFLAGGEIPIP-VPQGLGTVAIEYKEFGVTLQFLPTVVGDGRISM 324 Query: 331 RIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 ++ EVSE V+ + +P+ R+A TTVEL G + +AGLL+DD++Q P Sbjct: 325 KVAPEVSELDYTNVVQIQGFTIPAITSRRASTTVELADGQSFAIAGLLRDDVRQAVNKYP 384 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 +L +P+LG LFR+S + + ETE+ I TP L KP+ P D Y + F Sbjct: 385 VLGDMPVLGTLFRSSNWQKNETELVIIVTPHLAKPLEANATRLPTDAYREPSAFEYFILG 444 Query: 447 RVNKI----------YGPKEASEVEGQNYKGAIGFIY 473 R+ +GA G + Sbjct: 445 RMEGSRRADATAAAARTYGTTGAGAPSGMEGAFGHML 481 >gi|90411206|ref|ZP_01219219.1| Flp pilus assembly protein [Photobacterium profundum 3TCK] gi|90328052|gb|EAS44373.1| Flp pilus assembly protein [Photobacterium profundum 3TCK] Length = 489 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 121/447 (27%), Positives = 208/447 (46%), Gaps = 41/447 (9%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 ++V + + IS+ NK ++++P + + V +P AD+++ +Y+ GK G N Sbjct: 27 TTNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTN 86 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 VI+ + + LD+ + D+ L+ L F+ + I V + +VL G V + Sbjct: 87 VIIWDSKDRLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIA 146 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 AVE++ TF ++ +++NL+ + G QV L+VT+AEV+R ++++ + Sbjct: 147 TAVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKFV 195 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG------------------GDFSVKGVLDRFSFETVL 260 S + A + G + F Sbjct: 196 FARQSGNWTWGGANGGASVPSNVGILDPILDAAVSNPLNIDDNGLFASFLSSNTLFAAAF 255 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 + + LAEPTLTAISG+ A F SGG+ + ++ ++GV L F P Sbjct: 256 DIAKTNGLAKVLAEPTLTAISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFLP 313 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGD----------MPSYRVRKADTTVELPSGGTIVL 370 TV+S I L + EVSE +PS R A TT+EL +G TI + Sbjct: 314 TVMSADSINLALNIEVSEISNQNAVSITPGGTNSQFFVPSLSKRGAKTTIELGNGQTIGI 373 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++I + + +P L +PI+G LFR+ F + ETE+ I TP L KPV +D++ P Sbjct: 374 AGLLNENITDVVDKLPGLGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLP 433 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEA 457 D++ +D + + R++++ + A Sbjct: 434 TDNFVEPNDWEYYLLGRMSELKRNEPA 460 >gi|78357403|ref|YP_388852.1| type II/III secretion system protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219808|gb|ABB39157.1| type II/III secretion system protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 482 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 128/499 (25%), Positives = 220/499 (44%), Gaps = 63/499 (12%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 R F + ++ L + A +P + + K ++L+ Sbjct: 15 RHFPVLAAVLLSAVCAQAAIVPAA--------------------VQLAAGKSVVLETASP 54 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 V+ V V+ P A V+V SP +Y+ G G + L G DI + DIA L+ Sbjct: 55 VRRVSVAAPEVAQVLVLSPTQVYVTGVKPGGTTLTLWNAAGAVSHVFDIQVSPDIARLKE 114 Query: 126 TLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 L + + +I V V +++ L G V + A++++ + + KV Sbjct: 115 MLHKLLPSEKDIMVMTVGESITLAGTVSSPAHIATAMDMARMY------------APDKV 162 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------SGPSKSFA 231 NL+ + G Q+ L+V +AE+RR +++++G + + + Sbjct: 163 TNLMKVGGMHQIMLEVKVAEMRRSVMQRLGIDLAAAWGNSFAFTMLNQLFTLDNQDGTIG 222 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 +S + + + L L+ ++ LAEPTL SG+ ASF +GG Sbjct: 223 VGRTAAVLSPNNTGVFQAPVGGMTLTGFLDVLKENGLVKVLAEPTLVCRSGEHASFLAGG 282 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD 347 + V G ++ +YGV L FTPTVLSP +I L+++ EVSE VI +N Sbjct: 283 EIPIP-VPQGLGTVAIEFKEYGVTLDFTPTVLSPRQISLKVEPEVSELDYANVIQINGFS 341 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P R+A TTVEL G + +AGLL+D++++ + P L IP+LG LFR+S + + E Sbjct: 342 IPGISSRRASTTVELGDGQSFAIAGLLRDEVRETIKKYPGLGDIPVLGTLFRSSSWQKNE 401 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN-----------KIYGPKE 456 TE+ I TP L KP+ M + P D + + + F ++ + G + Sbjct: 402 TELVIIITPRLAKPLDMTAQTLPTDGFREPTEYEFFIQGKMEGDAPAAAPAAMRGSGDVQ 461 Query: 457 ASEVEGQ-NYKGAIGFIYK 474 +S+ +G G + + Sbjct: 462 SSDGNPPSGMEGEFGHVLR 480 >gi|114705456|ref|ZP_01438364.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506] gi|114540241|gb|EAU43361.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506] Length = 544 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 185/523 (35%), Positives = 275/523 (52%), Gaps = 65/523 (12%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L + + + A N+ + G + I +GL+K +L + D D+LV++P Sbjct: 24 ALGLTAAIALAPLALTQTAYAEQNVVQIGAGHTR-IELGLDKSKVLVLSADAHDILVANP 82 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + AD + R +YLFGK VGQ N+I+ +Q+ ++DI IERDIA L + +++ DS Sbjct: 83 SIADALTRDRRHIYLFGKQVGQTNLIVFDQANRQIASIDIQIERDIAGLSQAIAKYVPDS 142 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY------------------ 176 +++VE+++D VVL G VRT DS+R +++ +L+ Sbjct: 143 DVKVEIMNDNVVLTGRVRTPLDSKRVSQIASAYLTGGEATTGQYIRSASAGGESEGSNGD 202 Query: 177 -----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 +++NLL I GEDQVTLKVT+AEV+R I+KQ+G + + G + Sbjct: 203 VAFASETRRESQIINLLQIEGEDQVTLKVTVAEVQRSIIKQLGLNGATSSVIDGMTFGSL 262 Query: 232 AD--FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D FG + +F + G + L A+++A +RTLAEP LTAISG+SASF Sbjct: 263 IDNPFGLGKAASNSNFGLAGTIGDTGIRAQLSAMDQAGVMRTLAEPNLTAISGESASFKV 322 Query: 290 GGQHLYKTVSSSTG-----------------------------ATSVTTHDYGVVLHFTP 320 GG+ L T S T +YG+ L FTP Sbjct: 323 GGEFLLPTGQSYDYGEEAKREFKGFDGDGRAIYEEVPATRDVRTVETKTIEYGIGLDFTP 382 Query: 321 TVLSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLA 371 VLSPGRI L+++T VSEP R R ADTTVELPSGG++V+A Sbjct: 383 VVLSPGRISLKVRTSVSEPTFETPFGSSGGFDGGVTGIGIRKRLADTTVELPSGGSLVIA 442 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL++D+++Q+ G P LSK+P+LG+LFR+ F R ETE+ + TP+LV+PVA L+RPD Sbjct: 443 GLVRDEVRQVVSGFPGLSKLPVLGSLFRSRDFQRYETELVVIVTPYLVRPVAREALARPD 502 Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 D + D + F ++N++YG E G+ Y G +G+IYK Sbjct: 503 DGLAFASDGASNFLGKINRVYGHSETKLPPGR-YHGVVGYIYK 544 >gi|148256957|ref|YP_001241542.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1] gi|146409130|gb|ABQ37636.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1] Length = 489 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 160/492 (32%), Positives = 266/492 (54%), Gaps = 38/492 (7%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +L R F T +I L + NP++A + ++ + V+++ ++ +S+G+ K +++ Sbjct: 14 WLVRAFSTAAAIGL-AINPALAPVHAAEDRDTPVVSVGSSKV---HYLSLGIGKSVVVDF 69 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 P DV+DVLV+DP A+ VV S R Y+ G VGQ NV+ +G+Q+ DI I+RD+ Sbjct: 70 PQDVKDVLVADPKIANAVVRSARRAYIIGAAVGQTNVVFFDGEGQQVAAYDIAIKRDLNG 129 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + L + I ++++ V D V+L G V + ++Q+A E++ + S Sbjct: 130 VRQALSQSIPG--VKIDGVGDGVILTGSVSSPVEAQQAGEIASRLVGG----------SD 177 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240 KV+N + + G DQV LKV ++EVRR+I+KQ+G S + + +F Sbjct: 178 KVVNSIVVRGRDQVMLKVNVSEVRREIVKQLGIDLSASMTYGTAVVNFNNTNPFTAYGKS 237 Query: 241 -EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G+ S + A+E A +TLAEP LTAISG+SA+F +GG+ Sbjct: 238 LVNGNALNVSGGGLSSVSATMRAMETAGVTKTLAEPNLTAISGESATFIAGGEFPVPGGY 297 Query: 300 SSTGATSV-----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---------- 344 + T V T +G+ L+FTP VLS GRI LR+ TEVSE Sbjct: 298 NCDPTTRVCTTSITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAITVSYALTST 357 Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + +P+ R R+A+TT+E+PSGG++ +AGL+++ +Q G+P + ++P+LG LFR+ Sbjct: 358 SSSSVTIPAIRTRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGVDQLPVLGQLFRSK 417 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + ETE+ + TP++V+ VA ++L+RPDD ++ D+++ R+N++YG + Sbjct: 418 DYVNNETELMVLVTPYVVRAVAQKELARPDDGFAPATDSESALLGRMNRLYGIAAKVDTA 477 Query: 462 GQNYKGAIGFIY 473 G GFI Sbjct: 478 TGEPAG-FGFII 488 >gi|163751744|ref|ZP_02158962.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica KT99] gi|161328396|gb|EDP99555.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica KT99] Length = 484 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 118/436 (27%), Positives = 197/436 (45%), Gaps = 21/436 (4%) Query: 42 VEIGKGKKI-SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 G + I I + K I+ + V V V +P D+ + +Y+ GK +G N++ Sbjct: 31 GPTGASRDIMQIPIFKSRIINLKHAVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIM 90 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + + + + +DI I D+ L++ L F+ + V+ +++ G ++ A Sbjct: 91 IWDENERLVDVIDIEITHDLNGLKLRLHEFLPGEKLGVQTSQGHLLISGQASNLKKMNTA 150 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 VEL + V+N++ + G+ QV L+V IAEV+R++ +Q + I Sbjct: 151 VEL----AKAYAAAASVSKVKSTVLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIF 206 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEP 275 S S A G + +G D L ++ + LAEP Sbjct: 207 NKGSKMSGGVAGRGGSFDLDPAAAIDSRGFFARYLNDNLMMNFALDVAKQNGLAKILAEP 266 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 T+TA+SGQSA F SGG+ V G+T++ D+GV + F PTVL G+I L + Sbjct: 267 TVTALSGQSAEFLSGGEFPIP-VPGINGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVI 325 Query: 336 VSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 VSE +PS R TTVEL G TI ++GL+ D +++ + + Sbjct: 326 VSEISNVHSVSLSGGGSNATLIVPSIVKRTTSTTVELADGQTIAISGLISDTLRENIDKL 385 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P L IPILG LF + F ++E+ I TP LV+P + +S P D + + D + + Sbjct: 386 PGLGDIPILGQLFTSKSFKSGQSELVILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLL 445 Query: 446 NRVNKIYGPKEASEVE 461 +++ + S Sbjct: 446 GKMSHKKQNSQRSGTP 461 >gi|253996769|ref|YP_003048833.1| type II and III secretion system protein [Methylotenera mobilis JLW8] gi|253983448|gb|ACT48306.1| type II and III secretion system protein [Methylotenera mobilis JLW8] Length = 513 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 135/480 (28%), Positives = 226/480 (47%), Gaps = 32/480 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK---------ISIGLNKVI 58 M+ + L S P A P N V ++ ++ + + L + Sbjct: 24 LAAMLGVTLLSIAPLHAAEPQANMQNILVAAVTPKKVAARPTPSSTEIVPSVELSLGQSH 83 Query: 59 ILQVPVDV--QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ----MLNL 112 ++++P V Q V V D V V SPR + L K +G VI++ G+ + + Sbjct: 84 LVRLPAGVNLQRVKVDDDKIVQVDVTSPREVVLHAKTIGSTMVIILDKSGQSAVMDVRVV 143 Query: 113 DILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 D A L+ L++ + + I+V ++++VL G V + +A+ L+E + Sbjct: 144 AAATAMDAASLQTKLQQIMPNEKGIKVSTAAESLVLSGTVSDAVKADKAMALAEAY---- 199 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 KKV+N+L +A QV L+V +AEV +++L ++G + S+ G + + A Sbjct: 200 ----GGKDKDKKVINMLQVAAPQQVMLEVKMAEVSKNLLDKLGASFGASRSNGGVAYAIA 255 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + F ++ + + + + A + ++ LAEP + AISGQ SF +GG Sbjct: 256 SGFLSLTGADPLSPGGLLTITKGNTAIKVDAENKDGVVKILAEPNIIAISGQEGSFLAGG 315 Query: 292 QHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 + S+TG ++ D+GV L FTPTVL G I LR+ EVSE G Sbjct: 316 KIFIPVPQSNTGGGSNVLTLEERDFGVGLKFTPTVLEEGMINLRVAPEVSELNQGGTTVG 375 Query: 348 M---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 PS+ VR+ TTV+L G + +AGL+K+++ + P+L +IPILGALFR+S F Sbjct: 376 GSVFPSFTVRRVATTVQLRDGQSFAIAGLIKNNVTENVRRFPILGEIPILGALFRSSSFQ 435 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 ++TE+ TP LVKP+ D + P D ++ A+ F ++ E Q+ Sbjct: 436 EDKTELLFVITPRLVKPL-PPDFALPTDKFTPPSKAEFFLNGKLEGKPAEPATEESPAQS 494 >gi|116748930|ref|YP_845617.1| type II and III secretion system protein [Syntrophobacter fumaroxidans MPOB] gi|116697994|gb|ABK17182.1| type II and III secretion system protein [Syntrophobacter fumaroxidans MPOB] Length = 482 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 130/487 (26%), Positives = 207/487 (42%), Gaps = 45/487 (9%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 +++ L + S AA +KI + + K +I++ V Sbjct: 16 VLAFSLVLISSSALH--------AAGPVKVVTGEHAARKIHLQVGKSVIVRSGAPVVRTT 67 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 + P AD+V SP +Y+ GK G N+ L D K DI + D L+ L Sbjct: 68 LGSPDVADIVALSPTQIYITGKATGVTNLTLWQSDDKVSAIYDIEVAPDTMRLKEKLHEV 127 Query: 131 IADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + +I+V D++ L G + + +A+ L+E + KKV+NLL Sbjct: 128 LPGERDIKVSASHDSLTLSGTISSSTHLAQAMTLAEAYSGG-----------KKVINLLQ 176 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK------------ 237 ++G QV L+V +AE+ R + ++G SI + S + Sbjct: 177 VSGVHQVMLEVRVAEMSRTLTNRLGIN-SIWNVNGSMGASLLGNLASLDKFAGSASGSSS 235 Query: 238 --FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + + + F++ + AL+ ++ LAEPTL A+SGQSASF +GG+ Sbjct: 236 EFTFAPTVNSLFHILGGPFTWTAFIDALKEDGLVKVLAEPTLIAMSGQSASFLAGGEFPI 295 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSY 351 V G + +GV L FTPTVL+ R+ + + EVSE +P Sbjct: 296 P-VPQGLGTVGIEYKQFGVSLAFTPTVLNDKRMNIIVAPEVSELDYTTAINIAGVAVPGL 354 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 RK T +EL G + +AGLLKD I++ + P+L IP+LGALFR+ F R ETE+ Sbjct: 355 TTRKVSTAIELNDGQSFAIAGLLKDTIREDAKKFPILGSIPVLGALFRSVSFQRNETELI 414 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV-----EGQNYK 466 + TP L KP+ + P D + D++ FF + + + Sbjct: 415 VIVTPRLAKPIDVATQPLPTDKFIEPSDSEFFFLGLLQGRAPKPAPRAPLPITDKKAGFD 474 Query: 467 GAIGFIY 473 G G Sbjct: 475 GEFGHTV 481 >gi|84387245|ref|ZP_00990266.1| Flp pilus assembly protein [Vibrio splendidus 12B01] gi|84377892|gb|EAP94754.1| Flp pilus assembly protein [Vibrio splendidus 12B01] Length = 484 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 118/454 (25%), Positives = 205/454 (45%), Gaps = 27/454 (5%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 S + GK +++ +K + + V + DP D+V+ ++L GK +G Sbjct: 16 TASVAALQTGKTVTVPHHKSTHVVLSGKAAKVSLGDPEVLDIVILKSNELFLIGKKLGAT 75 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 N++ G+ + +++I + D+ L+ L F+ D I V + ++L G V Q Sbjct: 76 NLMAWDSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQM 135 Query: 158 QRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 A+ ++ET+ S ++ S S++ V+NL++I G QV L+VT+AEV+R ++++ Sbjct: 136 NVAMRIAETYSSGQTADKSNESGSEQADATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHA 262 +S A+ + F++ D F L Sbjct: 196 FDANFHFFQTSGSDFSWGASSVPAGVLGATPIFNIPTSTDYGILGSFIDSNTLFTFALDV 255 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 ++ + LAEP LTA+SG A F +GG+ ++ +YGV L F PTV Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTV 313 Query: 323 LSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAG 372 LS +I L + +VSE + +P R A +T+EL G TI +AG Sbjct: 314 LSDKKINLNLAVDVSEIANTSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAG 373 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 LL ++++ + +P +PILG LF + + ETE+ I TP L KP+ ++ P D Sbjct: 374 LLSENVRDISNKMPGFGDVPILGQLFNSQEYISGETELVILVTPRLAKPIDRSKVTLPTD 433 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + +D + + R I P E+ + Q + Sbjct: 434 AFVDPNDLEYYLLGRGAYIAEPSESDSEQSQASQ 467 >gi|254473733|ref|ZP_05087128.1| type II and III secretion system protein [Pseudovibrio sp. JE062] gi|211957119|gb|EEA92324.1| type II and III secretion system protein [Pseudovibrio sp. JE062] Length = 456 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 161/471 (34%), Positives = 264/471 (56%), Gaps = 23/471 (4%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M++ L + P +A EA V + V++ +++++G + I+L +V+DVLV Sbjct: 1 MALTLTVTAPQLATAQTNFEATVEVTSQHSVKV---RQLNVGEGRSIVLNTNEEVRDVLV 57 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 S+P AD VV + +++FG GQA+++L G+ GKQ+ + ++ ++ D + L ++R + Sbjct: 58 SNPKIADAVVRTRNRVFVFGNETGQASLVLFGNGGKQLASFNLNVQPDPSGLIELIQRLL 117 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 +S I ++V+++VVL G + ++Q+A +++ F+ KK++N + +A Sbjct: 118 PNSAINADIVNESVVLSGTAISALEAQQAYDIALKFVGND---------DKKIVNTIAVA 168 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFVSEGGDFSVK 248 +DQV LKVT+AEV R +KQ+G S F V G F + Sbjct: 169 EKDQVQLKVTVAEVERTTIKQLGVSLQGALSIGALDVKFNTSPAYNINPSVVNAGLFQGQ 228 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + S + ALER ++TLAEPTL A+SG++ASF +GG+ S+ Sbjct: 229 LPIGGGSIVPTIKALERDGVMKTLAEPTLVAVSGENASFLAGGEFPIPVAYEDN-KISLE 287 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-----RKADTTVELP 363 +GV L FTP VLS GRI LRI+TEVSE + V R+A++T+ELP Sbjct: 288 FKPFGVGLDFTPVVLSEGRIKLRIKTEVSELSSEGAVNLAGAISVSALKVRRAESTLELP 347 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SGGT+V+AGLLK + Q +GIP L +PILG +F++ + ++TE+ I TP++V+PVA Sbjct: 348 SGGTLVMAGLLKHNYGQEIDGIPGLKDVPILGTMFKSRDYINKQTELVIFVTPYVVRPVA 407 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 ++RPDD+++ D F N++++IY +A +Y G IG+IY+ Sbjct: 408 RSQIARPDDNFAAPSDQSTIFLNQLSRIYRSTDAPV--KGSYHGKIGYIYE 456 >gi|27375777|ref|NP_767306.1| hypothetical protein bll0666 [Bradyrhizobium japonicum USDA 110] gi|27348915|dbj|BAC45931.1| bll0666 [Bradyrhizobium japonicum USDA 110] Length = 505 Score = 326 bits (836), Expect = 5e-87, Method: Composition-based stats. Identities = 161/503 (32%), Positives = 262/503 (52%), Gaps = 45/503 (8%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVI---------NISDVEIGKGKKISIG 53 RTF+ + L ++ + K + +S+G Sbjct: 15 NRARTFWAGAMLTLGLLAAPGLVSAAEAPVGDQAPLQAPDLGVASVGTIAPAKTRFLSLG 74 Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 + K +++ +P +V+DVLV+DP A+ V+ S + Y+ G VGQ NV+ DG+Q+ D Sbjct: 75 VGKSVVIDLPREVKDVLVADPKIANAVIRSAQRAYIIGGQVGQTNVVFFTADGQQVAAYD 134 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 I ++RD+ + LR+ + +++E + D+V+L G V + ++Q+A E++ + Sbjct: 135 IAVKRDLNGMRAALRQSLPG--VQIEGIGDSVMLTGSVSSPVEAQQAGEVAAKLVGG--- 189 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 S+KV+N + + G DQV LKV + EVRRDI+KQ+G S + ++ +F Sbjct: 190 -------SEKVVNNIVVRGRDQVMLKVVVGEVRRDIVKQLGVDLSASLNAGTAVVNFNNS 242 Query: 234 -----FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 GG VS G + + A+E A +RTLAEP+LTAISG+SA+F Sbjct: 243 NPFSVSGGPLVSSNGLGVTGLAKGVATVNATMRAMETAGVMRTLAEPSLTAISGESATFI 302 Query: 289 SGGQHLYKTVSSSTGATSV-----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342 +GG+ + T V T +G+ L+FTP VLS GRI LR+ TEVSE Sbjct: 303 AGGEFPIPGGYACDPVTHVCTTQITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNQN 362 Query: 343 ------------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ +PS + R+A+TT+E+PSGG++ +AGL++ +Q G+P + + Sbjct: 363 AISVTQAVSASQTSSVTIPSIQTRRAETTLEIPSGGSMAMAGLIQQQTKQAINGLPGVDQ 422 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 +PI+GALFR+ F ETE+ + TP++V+ VA ++LSRPDD ++ DA+ R+N+ Sbjct: 423 VPIIGALFRSQDFVNNETELMVIVTPYVVRAVAQKELSRPDDGFAPASDAQTALLGRMNR 482 Query: 451 IYGPKEASEVEGQNYKGAIGFIY 473 +YG +G GFI Sbjct: 483 LYGI-ARRVDPIDGARGDFGFII 504 >gi|114568970|ref|YP_755650.1| type II and III secretion system protein [Maricaulis maris MCS10] gi|114339432|gb|ABI64712.1| type II and III secretion system protein [Maricaulis maris MCS10] Length = 491 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 147/502 (29%), Positives = 257/502 (51%), Gaps = 39/502 (7%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVII 59 MR ++ L + P A+ + N + I + G + + + L+K + Sbjct: 1 MRTEMMIRTLLLLASLAMAAPVAAQPAGTERGNTMQVYIREPGNGPVSETLDLPLSKAAV 60 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + +PVDV DVLV++P + +V +PR Y+ G +GQ N +G+ +L+LD+ +ERD Sbjct: 61 VHLPVDVADVLVTNPAVVEAIVRTPRRAYIMGMGIGQTNAFFFDANGQLILDLDLRVERD 120 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 ++ L+ ++ RF+ ++ I VE ++D +VL G + D+ A+ +++ ++ Sbjct: 121 LSPLQESIDRFLPNARIEVEAMNDHIVLSGRAPSASDADAALRIAQRWVDN--------- 171 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---- 235 +++++++ +QV L+V I E++R I++Q+G S G++ + Sbjct: 172 -PDNILSMISVEAREQVMLRVRIVEMQRTIVRQLGVNLSTAGTTGEFGFGVSTSPDFSRV 230 Query: 236 ---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 S D+ S +L A+ER +RTLAEP LTAI+G+SA+F +GG+ Sbjct: 231 GRFLGGTSAMLDWVSGNTGGVESVSAMLQAMERVGLVRTLAEPNLTAITGESANFLAGGE 290 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------- 344 G + +GV L FTP VLS GRI LRI TEVSE + Sbjct: 291 FPVPVGRDRDGNIIIEYKPFGVGLGFTPVVLSEGRISLRISTEVSELTSQGSLTFQSNNV 350 Query: 345 ------------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 +P+ V +A+TTVELPSGG++VLAGL++++ +Q +G+P + +P Sbjct: 351 LDDDGNVIGTVPGLTIPALNVNRAETTVELPSGGSLVLAGLIQEETRQNLDGVPGVQNLP 410 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +LG+LFR+ + +ETE+ + TP+LV P L P D + +A F R+N+ Y Sbjct: 411 VLGSLFRSRDYENQETELVVLVTPYLVDPTNPNQLQTPADGFRNASEASGLLFGRINRAY 470 Query: 453 GPKEASEVEGQNYKGAIGFIYK 474 + + + + G +GF+++ Sbjct: 471 SVPGSDTGD-RGWSGPVGFLFE 491 >gi|323499921|ref|ZP_08104880.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326] gi|323315162|gb|EGA68214.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326] Length = 487 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 115/453 (25%), Positives = 201/453 (44%), Gaps = 30/453 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + GK + + +K + + + V + DP D+V+ ++L GK +G N Sbjct: 17 SAVSATQSGKIVKVPHHKSTHVTLAAKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTN 76 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G+ + +++I + D+ L+ L F+ + I V + ++L G + Sbjct: 77 LMAWDSRGRLIESINIEVTHDLNSLKAKLYEFLPNEEIEVHSAQNRLILSGQISNQAAMN 136 Query: 159 RAVELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 +A+ ++ET+ + ++ S S++V +NL+ I G QV L+VT+AEV+R ++++ Sbjct: 137 KALRVAETYSAGQEADKENRSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKF 196 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG-------------DFSVKGVLDRFSFETVL 260 S+ S + GG F + F L Sbjct: 197 DSNFHFFESNGNFSWGGTSAGAIIDDVNGGIGPIFNAPGIDNTGFLGTFIDGDTLFTFAL 256 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ++ + + LAEP LTA+SG A F +GG+ ++ +YGV L F P Sbjct: 257 DIAKQNGSAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DDDGITIEYKEYGVGLKFIP 314 Query: 321 TVLSPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVL 370 TVLS I L + +VSE +P R A +T+EL G TI + Sbjct: 315 TVLSDKHINLNLAIDVSEIANSATLTLNPGGTNGTYVIPPITRRSASSTLELADGQTIGI 374 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++++ + G+P S IP+LG +F + + ETE+ I TP L KP+ +S P Sbjct: 375 AGLLSENVRDVVSGVPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRSKVSLP 434 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 D + +D + + R I ++ E Q Sbjct: 435 TDSFVEPNDFEYYLLGRGAYIAPTGKSKSNESQ 467 >gi|296444395|ref|ZP_06886360.1| type II and III secretion system protein [Methylosinus trichosporium OB3b] gi|296258042|gb|EFH05104.1| type II and III secretion system protein [Methylosinus trichosporium OB3b] Length = 485 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 165/487 (33%), Positives = 251/487 (51%), Gaps = 19/487 (3%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M +R ++ L A P A + SD + +++++G+ K II+ Sbjct: 1 MSGSRRHLIPTLATAL---ALVGAGSLPAVAAPQSWGVESDSDAIMSRRVAMGVGKSIIV 57 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D +++V +P A+ VV S R +Y+ G GQ + + G+Q+ NL+I I RD+ Sbjct: 58 DLPADAAEIVVGNPKVANAVVRSTRKLYIMGVETGQTTIFALDRSGRQIANLEISIGRDV 117 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN-- 178 L L + +SNI V+D ++L G V + ++QRAV++++ F ++S + Sbjct: 118 GELGPLLHAALPNSNISARTVNDAIILTGTVDSASEAQRAVDIAKGFAARSASASAQSAG 177 Query: 179 --SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFG 235 + V+N L I +DQV LKVT+AEV R +LKQ+G G + Sbjct: 178 GSPADGLVVNALVIRTQDQVMLKVTVAEVERRVLKQLGISAQSGGETLLKGGWGQLVQQN 237 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V+ S + L A ER R LAEPT+TAISG+SA FT GG+ Sbjct: 238 PFAVNSALTASSLTINGNNGSTATLQAYERYGVSRVLAEPTVTAISGESAKFTVGGEIAV 297 Query: 296 KTVSSST------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NA 345 SS + + YGV L+FTP VL+ GRI L + TEV+E N Sbjct: 298 PGNSSCIAGSTLCSSVGIVFKPYGVSLNFTPVVLAQGRILLHLATEVTEIDYQAAQAYNG 357 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P ++ RK +T+VELPSGG+I AGLL Q G+P L +P+LGALFR+ + R Sbjct: 358 VTVPGFKTRKNETSVELPSGGSIATAGLLTQKSDQAINGLPGLINLPVLGALFRSRDYQR 417 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 ETE+ I TP++ + ++ RD++RPDD ++ D +A+ RVN++Y + + Q Sbjct: 418 NETELLIVVTPYIARALSARDVTRPDDGFADASDPQAWLLGRVNRLYANPQHPQAAPQ-L 476 Query: 466 KGAIGFI 472 KG IGFI Sbjct: 477 KGRIGFI 483 >gi|303248302|ref|ZP_07334564.1| type II and III secretion system protein [Desulfovibrio fructosovorans JJ] gi|302490327|gb|EFL50239.1| type II and III secretion system protein [Desulfovibrio fructosovorans JJ] Length = 528 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 132/503 (26%), Positives = 219/503 (43%), Gaps = 75/503 (14%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 + AA + V + ++S+ + K +ILQ DV V V+ P AD V+ SPR Sbjct: 20 CGMATLSYAAPGRMGTVAVRTAPRLSLTIGKSVILQSDADVSRVSVAQPEIADFVLLSPR 79 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDT 144 +Y+ G+ G N+ L K D+ + DI+ L+ L + I V D+ Sbjct: 80 QIYVTGRAPGITNLTLWDKGDKVRAVYDLDVAPDISRLKKMLHDVMPGESGIEVMSSQDS 139 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 + L G VR + ++A+ L+E + + KKV+NLL++ G QV L+V +AE Sbjct: 140 IALSGTVRDSANMKKALALAEVY------------APKKVLNLLSVGGVQQVMLEVRVAE 187 Query: 205 VRRDILKQIGFQHSITGSSSGPSK----------------------------SFAADFGG 236 + + ++ ++G + G + + + D Sbjct: 188 MSKSLVNRMGINLNAVGDGNFAYTLIGSLSSVASGMFDTYYPQNAYQYITMTANSGDGNS 247 Query: 237 KFVSEGGDF--------------------------SVKGVLDRFSFETVLHALERATAIR 270 F S + G + V+ L++ ++ Sbjct: 248 SFDSTPIQLAYREFNQPSSKATMSFNQGTAVARWNTNFGGAGNTAMTAVVDMLKQNGLVK 307 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP L ++GQSA F +GGQ VSS G TS+ +GV L+FTPTV++ RI L Sbjct: 308 ILAEPNLVCLNGQSADFLAGGQIPVP-VSSGLGTTSIEWKKFGVQLNFTPTVVAGDRINL 366 Query: 331 RIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 ++ EVS +P+ R+ TT+EL +G T +AG+L + + + P Sbjct: 367 KVNPEVSNLDYTRAITLLGSTVPAINTRQTSTTIELKNGQTFAIAGMLNEQSRDSMDKYP 426 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 +L IP+LGALF++S++ +++TE+ I T LVKP+ + +S P D DD + F Sbjct: 427 VLGDIPVLGALFKSSQYQKDQTELVILITAHLVKPLDKKAISLPTDSAHEPDDLEFFLG- 485 Query: 447 RVNKIYGPKEASEVEGQNYKGAI 469 +A +GQ+ Sbjct: 486 --ISRDAKSDAGAAQGQSLSTPA 506 >gi|218887827|ref|YP_002437148.1| type II and III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758781|gb|ACL09680.1| type II and III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 493 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 127/478 (26%), Positives = 211/478 (44%), Gaps = 40/478 (8%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82 A + + + + + K ++++ V +SD A VVV Sbjct: 20 AAACAVLATVLLLAAAAQAQADATPQAVPLAVGKSMVVRTAQPAARVSMSDEAIAGVVVL 79 Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMV 141 SP+ +Y+ GK G A + L G DI + D+A L+ L R + D +I V V Sbjct: 80 SPQQVYVTGKKAGGATLTLWNGAGAITQVYDIQVTPDLAQLKEMLHRVLPDEKDIMVMAV 139 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 +++ L G VR+ A+++++ + + KV NL+ + G QV L+V Sbjct: 140 GESITLAGTVRSAAGMTTALDVAKMY------------APDKVTNLMQVGGVHQVLLEVK 187 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPS-------------KSFAADFGGKFVSEGGDFSVK 248 +AE+R+ +L+++G + ++ G VS + Sbjct: 188 VAEMRKSVLERLGIDLTYAWNNDFAFGMLNQLFTLDSQKGVVGVGPTGAVVSPNVTGMFR 247 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 R S L L++ ++ LAEPTL SG++A F +GG+ V G ++ Sbjct: 248 ATSGRASLMGFLDVLKQNGLVKVLAEPTLICRSGENADFLAGGEIPIP-VPQGLGTVAIE 306 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPS 364 YGV L FTPTV+S I +R+ EVSE VI +N +P+ R+A TTVEL Sbjct: 307 FKKYGVTLGFTPTVVSDKLISMRVSPEVSELDYSNVIEINGFTIPAISTRRAATTVELAD 366 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G + +AGLL+D++++ + P+L +P+LG LFR+S + + ETE+ I TP L KP+ Sbjct: 367 GQSFAVAGLLRDEVRENIKKYPVLGDVPLLGTLFRSSNWQKNETELVIIVTPRLAKPLDG 426 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNK---------IYGPKEASEVEGQNYKGAIGFIY 473 P D + + + F ++ Y S +G G + Sbjct: 427 ATAKLPTDGFREPSEFEFFLQGKMEGAAPAITAPAAYANPRNSADAPSGMEGEFGHVL 484 >gi|218710406|ref|YP_002418027.1| Flp pilus assembly protein [Vibrio splendidus LGP32] gi|218323425|emb|CAV19602.1| Flp pilus assembly protein [Vibrio splendidus LGP32] Length = 484 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 118/455 (25%), Positives = 206/455 (45%), Gaps = 27/455 (5%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 +S + GK +++ +K + + V + DP D+V+ ++L GK +G Sbjct: 16 TLSFAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVMLKSSELFLIGKKLGAT 75 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 N++ G+ + +++I + D+ L+ L F+ D I V + ++L G V Q Sbjct: 76 NLMAWDSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQM 135 Query: 158 QRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 A+ ++ET+ S ++ S S++ V+NL++I G QV L+VT+AEV+R ++++ Sbjct: 136 NVAMRIAETYSSGETADESKESGSEQAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHA 262 +S A+ + F + D F L Sbjct: 196 FDANFHFFQTSGSNISWGASSVPAGVLGATPIFDIPTSTDYGILGSFIDSNTLFTFALDV 255 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 ++ + LAEP LTA+SG A F +GG+ ++ +YGV L F PTV Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTV 313 Query: 323 LSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 LS +I L + +VS +P +P R A +T+EL G TI +AG Sbjct: 314 LSDKKINLNLAVDVSEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAG 373 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 LL ++++ + +P + +PILG LF + + ETE+ I TP L P+ ++ P D Sbjct: 374 LLSENVRDVSNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLASPIDRSKVTLPTD 433 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 + +D + + R I P E+ + Q +G Sbjct: 434 AFVDPNDLEYYLLGRSAYIAEPSESDSEQSQASQG 468 >gi|323137425|ref|ZP_08072503.1| type II and III secretion system protein [Methylocystis sp. ATCC 49242] gi|322397412|gb|EFX99935.1| type II and III secretion system protein [Methylocystis sp. ATCC 49242] Length = 504 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 163/503 (32%), Positives = 253/503 (50%), Gaps = 35/503 (6%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQV 62 + R ++ + + A A + + + ++IS+G+ K II+ + Sbjct: 1 MSRLMQNVIGAVWATVAVATATGIAPAHAQGPGVGVESGDNAMLARRISMGVGKSIIVDL 60 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 P D +V+V +P AD +V S R +Y+ G + GQ + + G+Q+ NL+I I RD+ Sbjct: 61 PRDATEVVVGNPKVADAIVRSARKLYIMGMDAGQTTIFAVDSSGRQVANLEISIGRDVGE 120 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS----------- 171 L L+ + SNI V+D ++L G V + ++ RAV++++ F S++ Sbjct: 121 LAPLLKAALPKSNITARTVNDIIILTGTVSSAGEALRAVDIAKGFASRAMGGGAGGGGGV 180 Query: 172 -------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 S+ V+N L I GE+QV LKVT+AEV R ++KQ+GF G + Sbjct: 181 AGQASNSQVGGVGGSADGNVINALTIRGEEQVMLKVTVAEVERKVIKQLGFSAQAGGETI 240 Query: 225 -GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S ++ S + + L A ER R LAEPT+TA+SG+ Sbjct: 241 LNGSWGKLVQENPFAINPTMSNSALIINGPNNTNATLKAFERYGVSRILAEPTVTAVSGE 300 Query: 284 SASFTSGGQHLYKTVSSSTGATS----------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 +A GG+ S T T+ +T YGV L+F P VLS GRI L + Sbjct: 301 AAKMLVGGEIAVPGSGSCTFFTNGGGQPICSPGITFKSYGVSLNFVPIVLSEGRIHLHLA 360 Query: 334 TEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EV+E + +P ++ RK +T+VELPSGG+I AGLL Q G+P L Sbjct: 361 AEVTEVDLQNTFTYANVAVPGFKTRKNETSVELPSGGSIATAGLLTQKSSQAISGLPGLL 420 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 +PILGALFR+ + R ETE+ + TP++V+P++ +D+SRPDD ++ D + + RVN Sbjct: 421 NLPILGALFRSRDYLRNETELLVIVTPYIVRPLSAQDVSRPDDGFADASDPQGWLLGRVN 480 Query: 450 KIYGPKEASEVEGQNYKGAIGFI 472 +IY + QN+KG IGFI Sbjct: 481 RIY-STRNNPQLMQNFKGRIGFI 502 >gi|307294424|ref|ZP_07574268.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] gi|306880575|gb|EFN11792.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] Length = 503 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 133/481 (27%), Positives = 214/481 (44%), Gaps = 45/481 (9%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M L + + + LP +A A + +++ ++ + LNK +L LV Sbjct: 9 MLASLLTLSAGASLLPI--QAQAQIASLNLSNANHAGQLDVPLNKSQVLTADRPFAKALV 66 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 + ADV+ + R++Y+ GK +G ++ L + +D+ + D+ L+ L + Sbjct: 67 GNAEIADVLPMTNRSVYVLGKKMGTTSLTLYDSRNIMIAVVDVAVGPDVVTLKRQLSDLL 126 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 I + +D+VVL G + + RAV++++T+ KV+N++++ Sbjct: 127 PGQPIGARISNDSVVLTGTLSSAAAVDRAVQIAKTYAG------------DKVVNMMSVG 174 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK-------------- 237 QV L+V +E+ R KQ G + S Sbjct: 175 ASQQVMLEVRFSEMSRGAAKQFGINTAFLSDSGKVVGGIGNAAQSSAILSDTNGRPIVDL 234 Query: 238 --FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G + + + T L ALER + TLAEPTL A+SG++ASF +GG+ Sbjct: 235 SKILDSFGIGAANFSIGSLNITTALDALERKGVVTTLAEPTLVALSGETASFLAGGEFPI 294 Query: 296 KTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----V 340 S++G ++ +GV L FTPTVL G I L ++ EVS Sbjct: 295 PVAQSNSGGGGGGGGNSGNAITIEFKPFGVSLGFTPTVLDDGIINLVVEPEVSSIDPSAS 354 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + VN +P + R+A TT+EL G + LAGLL+ D Q P+L IPI+GALFR+ Sbjct: 355 VTVNGLTIPGLQTRRASTTLELRDGQSFALAGLLRKDFQDTVRQFPILGSIPIIGALFRS 414 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 S F + ETE+ I TP LVKP+ D++ P D + F R +K G Sbjct: 415 SGFQKSETELVIIVTPRLVKPMRAEDVALPTDRVKPPHELDLFLMGRTDKAVGINPLDPN 474 Query: 461 E 461 Sbjct: 475 A 475 >gi|292491519|ref|YP_003526958.1| type II and III secretion system protein [Nitrosococcus halophilus Nc4] gi|291580114|gb|ADE14571.1| type II and III secretion system protein [Nitrosococcus halophilus Nc4] Length = 565 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 127/544 (23%), Positives = 220/544 (40%), Gaps = 80/544 (14%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVE-----IGKGKKISIGLNKVII 59 +RT+ + + FL + L + A + + E + L K + Sbjct: 13 RRTWLSGILFFLVINIIVFFSLTSLALAQTSPLTPRQSENLIIQSDIEGDFQVPLYKSGV 72 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 +++ + + V +P AD+++ R +Y+ GK +G NV++ + + + +I + D Sbjct: 73 IELEERAKRISVGNPGIADILMLHSRQLYVVGKALGTTNVVVWDKNERVFASFNIEVVHD 132 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS---------- 169 + L+ L R + I V + ++L G V ++ + A +L++ FL Sbjct: 133 LDTLKRKLHRLLPGEVIEVHSAQERIILSGQVSSVVKMKAAEDLAQGFLPECISAESNVL 192 Query: 170 -------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + V+NL+ + G QV L++ +AE+ R +L Sbjct: 193 VRDTTQGTPIIIQQGDGGRGASGANQEGCKKGSVVNLMQVGGAHQVMLEIKVAEIARTVL 252 Query: 211 KQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------ 255 K+ S + S A F G + + G L+ Sbjct: 253 KRFDSNFNVFSFDSPWKFGANSGGASFPNALTPSGNEVPILGSLNGEDSPIGPVVDLFQP 312 Query: 256 --------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 E VL A + + LAEPTLT ++GQ A F SGG+ Sbjct: 313 NTPGIQDKGVFLSYLSSKFFLEAVLEASRQKGLAKVLAEPTLTTLTGQEAQFVSGGEFPI 372 Query: 296 KTVSSS-TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----------GVN 344 S TG ++ ++GV+++F P VL GRI L++ VSE N Sbjct: 373 PVPQSGITGNVTIEFKEFGVIVNFLPLVLDSGRINLKLNVAVSELSQDVPVTLGVQGTEN 432 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +PS R A TVEL G TI +AGL+ D++++L +P L +PILGALFR+ F Sbjct: 433 TFVIPSLTKRSAKATVELADGQTIGIAGLINDNLRELVTKLPGLGDVPILGALFRSQEFM 492 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 +TE+ + TP L +P++ + + P D + D + + R+ + +G Sbjct: 493 SGQTELVMFVTPHLARPISPQQVKLPTDSFVPPTDLEFYLMGRMEAREMSNSSPSSQGII 552 Query: 465 YKGA 468 G Sbjct: 553 DIGP 556 >gi|218680971|ref|ZP_03528868.1| putative pilus assembly protein [Rhizobium etli CIAT 894] Length = 434 Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 214/438 (48%), Positives = 288/438 (65%), Gaps = 25/438 (5%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 +GLNK +++ +P D D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++N Sbjct: 2 LGLNKAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVN 61 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 LDI IERD++ LE+ LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL Sbjct: 62 LDIEIERDVSGLEVNLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGG 121 Query: 172 GRNQYANSS-----------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 ++ + +V+NLL I GEDQVTLKVTIAEVRR++LKQ+G Sbjct: 122 EATTRTETASGTGGDSSVALFAEGRQASQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLG 181 Query: 215 FQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 F + + +G + S +AD V G K + ++ T L+ALE+A ++T Sbjct: 182 FDNLVSNSSGMTVAQLGSPSADSATSTVGGGLAALFKSTIGKYDISTYLNALEQAKVVKT 241 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEPTLTAISGQ+A+F SGGQ LY T S G +VT +YG+ L F P VLS GRI L+ Sbjct: 242 LAEPTLTAISGQAATFNSGGQQLYSTT-DSDGNVTVTPFNYGINLAFKPVVLSSGRISLQ 300 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 I+T VSEPV G Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKI Sbjct: 301 IKTNVSEPVAGSGNAT---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKI 357 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P+LG LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+ Sbjct: 358 PLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKV 417 Query: 452 YGPKEASEVEGQNYKGAI 469 YG +EA + Q + G+I Sbjct: 418 YGRREAPVADAQ-FHGSI 434 >gi|315497465|ref|YP_004086269.1| type II and iii secretion system protein [Asticcacaulis excentricus CB 48] gi|315415477|gb|ADU12118.1| type II and III secretion system protein [Asticcacaulis excentricus CB 48] Length = 476 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 142/467 (30%), Positives = 241/467 (51%), Gaps = 19/467 (4%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 + + A P + + + + + +++ + ++ +PVD DV VS+P Sbjct: 20 MAVSGVEAAPKPYSAPVSPMTVQTQTSGARTQVLNLAKGRSAVVDLPVDAADVFVSNPAV 79 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 AD V+ +PR +++ G GQ++ I G+Q+LNL I + L T+++ S++ Sbjct: 80 ADAVLRTPRRIFVLGVAAGQSDAIFFDATGRQILNLQIRVGVSTDQLSDTVQKLYPQSDV 139 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 +V+ V+ V+L G+V +S+ LS F + + ++N+L++AG+DQV Sbjct: 140 QVQSVNGYVILSGVVANASESEAIQRLSVAFAEK----------PENIINMLSVAGKDQV 189 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 +LKV I EV++ +KQ+GF + +G + + + +K Sbjct: 190 SLKVRIVEVQKSSIKQMGFNFNGLSGQTGEVQYALQNAPTYGTNGKALGGMKIGYADKLL 249 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 L A ER +RTLAEP L A+SG+SA F +GG+ + G +V YGV L Sbjct: 250 SASLQAFERVGLVRTLAEPNLAAVSGESAKFLAGGEFPVPVAKDTQGRVTVEFKTYGVGL 309 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELPSGGTIVLA 371 FTP VLS G I L++ TEVSE V + +P VR+A+TTVELPSGG++++A Sbjct: 310 GFTPVVLSNGTISLKLSTEVSEIVNTGSFSLDDTFTIPGLSVRRAETTVELPSGGSLMIA 369 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GLL+ +Q + +P ++ IP+LGALFR+ F E+TE+ + TP+++ + P Sbjct: 370 GLLQSKYKQSIDALPGMTTIPVLGALFRSRDFLDEQTEMVVIVTPYIISAKSPDAFQTPA 429 Query: 432 DHYSVEDDAKAFFFNRVNKI----YGPKEASEVEGQNYKGAIGFIYK 474 D++ V D ++ F R+NK G + +Y+ IG++ + Sbjct: 430 DNFQVASDLESVFLGRLNKSVRAKRGEVAEAPPLAGSYQAPIGYVIE 476 >gi|254506750|ref|ZP_05118890.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus 16] gi|219550331|gb|EED27316.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus 16] Length = 487 Score = 322 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 114/456 (25%), Positives = 204/456 (44%), Gaps = 30/456 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + GK + + +K + + + V + DP D+V+ ++L GK +G N Sbjct: 17 SATAATQSGKIVKVPHHKSTHVTLAGKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTN 76 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G+ + +++I + D+ L+ L F+ + I+V + ++L G + + Sbjct: 77 LMAWDRRGQLIESINIEVTHDLNSLKAKLYEFLPNEEIKVHSAQNRLILSGQISSQSAMN 136 Query: 159 RAVELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A+ ++ET+ + ++ S S++V +NL+ I G QV L+VT+AEV+R ++++ Sbjct: 137 IALRVAETYSAGQEVDKENKSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKF 196 Query: 214 GFQHSITGSSSGPSKSF----------AADFGGKFVSEG---GDFSVKGVLDRFSFETVL 260 S+ S G F + G + F L Sbjct: 197 DSNFHFFESNGSFSWGGTSAGAIIDDVGGGIGPIFNTPGIDSTGLLGTFIDGDTLFTFAL 256 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ++ + LAEP LTA+SG A F +GG+ + ++ +YGV L F P Sbjct: 257 DIAKQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDENG--ITIEYKEYGVGLKFIP 314 Query: 321 TVLSPGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVL 370 TVLS I L + +VSE + +P R A +T+EL G TI + Sbjct: 315 TVLSDKNINLNLAVDVSEIANTSSLTLSPGGTNSTYVIPPITRRSASSTLELADGQTIGI 374 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++++ + G+P S IP+LG +F + + ETE+ I TP L KP+ +S P Sbjct: 375 AGLLSENVRDVVSGMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRNRVSLP 434 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 D + +D + + R I ++ + Q+ Sbjct: 435 TDSFVEPNDFEYYLLGRGAYIAPSNQSRPQDVQDTN 470 >gi|260771478|ref|ZP_05880403.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] gi|260613604|gb|EEX38798.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] gi|315181060|gb|ADT87974.1| Flp pilus assembly protein, secretin CpaC [Vibrio furnissii NCTC 11218] Length = 489 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 114/453 (25%), Positives = 200/453 (44%), Gaps = 30/453 (6%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 GK +++ +K +++ V + DP D+V+ ++L GK +G N+ Sbjct: 18 VYAANQSGKVVTVPHHKSTYVKLQGAASRVSLGDPEVLDIVMLKADELFLIGKRLGSTNL 77 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + G+ + +++I + D+ L+ L F+ + I V + ++L G V + + Sbjct: 78 MAWDRRGQLLESINIEVTHDVNSLKAKLYEFLPNETISVHSAQNRLILSGQVSSQEKMNL 137 Query: 160 AVELSETFLSQSGRNQYANSSSK-----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 A+ L+ET+ S ++ +S +K V+NL++I G QV ++VT+AEV+R ++++ Sbjct: 138 ALRLAETYASGDTADKATDSRNKEAEKTGVVNLMSIGGAQQVMIEVTVAEVQRSLVRRFD 197 Query: 215 FQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVLH 261 + S + G + + F L Sbjct: 198 SNFHFFEGNGKFSWGATSAGGYIDDITGVAGPVFNAPTIDSTGLLSTFIDGDTLFTLALD 257 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 + + LAEP LTA+SG A F +GG+ + ++ +YGV L F PT Sbjct: 258 VAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPNRDG--ITIEYKEYGVGLKFIPT 315 Query: 322 VLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 VLS +I L + +VSE P A +P R A +T+EL G TI +A Sbjct: 316 VLSDKKINLNLAVDVSEIASSTTLTVSPSGTNAAYYIPPITRRSAASTLELADGQTIGIA 375 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GLL ++++ P + IP+LG LF + + ETE+ I TP L KP+ + P Sbjct: 376 GLLSENVRDSVSKFPGIGDIPVLGQLFNSQEYVSGETELVILVTPRLAKPIDRSKVVLPT 435 Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 D + D K + + I GP++ + + Sbjct: 436 DAFVEPTDLKYYLLGQGAYIAGPRDVKRTKASD 468 >gi|51245387|ref|YP_065271.1| hypothetical protein DP1535 [Desulfotalea psychrophila LSv54] gi|50876424|emb|CAG36264.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 480 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 126/490 (25%), Positives = 214/490 (43%), Gaps = 42/490 (8%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 F M+++ + + P E+ A V+ + G+ + + +N++ L+ ++ Sbjct: 7 FVRMLTVSICCLLV-MGGGPFAAESEATVL----INTKPGEPVQLTINRLAKLRSSEVIR 61 Query: 68 DVLVSDPTKADV---VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 + +P A++ SP +++ GK++G + L G K + +I++ D+ L+ Sbjct: 62 RAHIVNPDIAELIYSKTQSPAWVFVSGKSIGTTQLTLWGARNKILGTFEIIVRPDVLGLK 121 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 + N+ V D + L G V Q+ + L+E + + KV Sbjct: 122 KHIHDVFPGENVSVRDSGDFLTLTGTVAGAVRLQKILALAEAY------------APSKV 169 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---- 240 +NLL + G QV L+V IAE+ + + Q+G + GSS G + Sbjct: 170 INLLKVGGIQQVMLEVRIAEISKRVGNQLGINFGLDGSSGFGLSMLDGLSGLPGGTLPIE 229 Query: 241 --------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G S+ + AL+ ++ LA+PTL A SGQSASF +GG+ Sbjct: 230 PARVLDGLNIGSGVNAVFGKSGSYIVAIDALQEDGLVKVLAKPTLIAQSGQSASFLAGGE 289 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDM 348 + + + +GV L+FTPTVL GRI L + EVS+ + Sbjct: 290 FPFPVAQQFDRFS-IEWKPFGVGLNFTPTVLGEGRISLLVSPEVSDLDFTNTISYAGYVV 348 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS R+ T VEL + +AGL+K++I++ + PLL IPILG LFR+S++ + ET Sbjct: 349 PSIETRRMSTVVELNDNQSFAIAGLMKNNIRESIKKFPLLGDIPILGVLFRSSKYIKNET 408 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK-----EASEVEGQ 463 E+ + TP LV PV +LS P D + + + A+ Sbjct: 409 ELVVVVTPHLVTPVDGDELSLPTDSFVEPTAFELLVLGMLEGKEKQTYVENASATGANSL 468 Query: 464 NYKGAIGFIY 473 +G G+I Sbjct: 469 PLEGDFGYIV 478 >gi|258621447|ref|ZP_05716481.1| Flp pilus assembly protein [Vibrio mimicus VM573] gi|262171232|ref|ZP_06038910.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus MB-451] gi|258586835|gb|EEW11550.1| Flp pilus assembly protein [Vibrio mimicus VM573] gi|261892308|gb|EEY38294.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus MB-451] Length = 488 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 111/436 (25%), Positives = 190/436 (43%), Gaps = 30/436 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + I GK +++ +K + + + V + DP D+V+ ++L G+ +G N Sbjct: 17 TAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTN 76 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G + +L++ + D+ L+ L + D I+V + ++L GMV + Sbjct: 77 LMAWDSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMN 136 Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A+ ++ET+ + ++ S V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196 Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260 + S + G E + F L Sbjct: 197 DSNFHFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFAL 256 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 + + LAEP LTA+SG A F +GG+ ++ +YGV L F P Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDKDG--VTIEYKEYGVGLKFIP 314 Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 T+LS RI L + +VSE + +P R A +T+EL G TI + Sbjct: 315 TILSDKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGI 374 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++++ + +P IP+LG LFR+ + ETE+ I TP L KPV ++ P Sbjct: 375 AGLLSENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLP 434 Query: 431 DDHYSVEDDAKAFFFN 446 D + D K + Sbjct: 435 TDAFVEPSDFKYYLLG 450 >gi|258627504|ref|ZP_05722285.1| Flp pilus assembly protein [Vibrio mimicus VM603] gi|258580310|gb|EEW05278.1| Flp pilus assembly protein [Vibrio mimicus VM603] Length = 488 Score = 320 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 111/436 (25%), Positives = 190/436 (43%), Gaps = 30/436 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + I GK +++ +K + + + V + DP D+V+ ++L G+ +G N Sbjct: 17 TAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTN 76 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G + +L++ + D+ L+ L + D I+V + ++L GMV + Sbjct: 77 LMAWDSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMN 136 Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A+ ++ET+ + ++ S V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196 Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260 + S + G E + F L Sbjct: 197 DSNFHFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFAL 256 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 + + LAEP LTA+SG A F +GG+ ++ +YGV L F P Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDKDG--VTIEYKEYGVGLKFIP 314 Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 T+LS RI L + +VSE + +P R A +T+EL G TI + Sbjct: 315 TILSDKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGI 374 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++++ + +P IP+LG LFR+ + ETE+ I TP L KPV ++ P Sbjct: 375 AGLLSENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLP 434 Query: 431 DDHYSVEDDAKAFFFN 446 D + D K + Sbjct: 435 TDAFVEPSDFKYYLLG 450 >gi|262165919|ref|ZP_06033656.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus VM223] gi|262025635|gb|EEY44303.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus VM223] Length = 488 Score = 320 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 111/436 (25%), Positives = 190/436 (43%), Gaps = 30/436 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + I GK +++ +K + + + V + DP D+V+ ++L G+ +G N Sbjct: 17 TARGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTN 76 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G + +L++ + D+ L+ L + D I+V + ++L GMV + Sbjct: 77 LMAWDSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMN 136 Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A+ ++ET+ + ++ S V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196 Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260 + S + G E + F L Sbjct: 197 DSNFHFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFAL 256 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 + + LAEP LTA+SG A F +GG+ ++ +YGV L F P Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDKDG--VTIEYKEYGVGLKFIP 314 Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 T+LS RI L + +VSE + +P R A +T+EL G TI + Sbjct: 315 TILSDKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGI 374 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++++ + +P IP+LG LFR+ + ETE+ I TP L KPV ++ P Sbjct: 375 AGLLSENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLP 434 Query: 431 DDHYSVEDDAKAFFFN 446 D + D K + Sbjct: 435 TDAFVEPSDFKYYLLG 450 >gi|86147467|ref|ZP_01065779.1| Flp pilus assembly protein [Vibrio sp. MED222] gi|85834760|gb|EAQ52906.1| Flp pilus assembly protein [Vibrio sp. MED222] Length = 485 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 113/435 (25%), Positives = 197/435 (45%), Gaps = 27/435 (6%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 S + GK +++ +K + + V + DP D+V+ ++L GK +G Sbjct: 16 TASVAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVILKSNEVFLIGKKLGAT 75 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 N++ G+ + +++I + D+ L+ L F+ D I V + ++L G + Q Sbjct: 76 NLMAWDSRGQLIESINIEVTHDLNSLKSKLYEFLPDETIEVHSAQNRLLLSGQISNQQKM 135 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 A+ ++ET+ + + S S++V +NL++I G QV L+VT+AEV+R ++++ Sbjct: 136 NVAMRIAETYAAGQAADDSKESGSEQVAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHA 262 +S A+ + F + D F L Sbjct: 196 FDANFHFFQTSGSNFSWGASSVPAGALGATPVFDIPTSTDYGILGSFIDSNTLFTFALDV 255 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 ++ + LAEP LTA+SG A F +GG+ ++ +YGV L F PTV Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTV 313 Query: 323 LSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 LS +I L + +VS +P +P R A +T+EL G TI +AG Sbjct: 314 LSDKKINLNLAVDVSEIANSSSLTIDPGSTNATYFIPPITRRSASSTLELADGQTIGIAG 373 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 LL ++++ + +P + +PILG LF + + ETE+ I TP L KPV ++ P D Sbjct: 374 LLSENVRDVSNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLAKPVDRSKVTLPTD 433 Query: 433 HYSVEDDAKAFFFNR 447 + +D + + R Sbjct: 434 AFVDPNDLEYYLLGR 448 >gi|239908021|ref|YP_002954762.1| bacterial type II and III secretion system protein family protein [Desulfovibrio magneticus RS-1] gi|239797887|dbj|BAH76876.1| bacterial type II and III secretion system protein family protein [Desulfovibrio magneticus RS-1] Length = 528 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 124/502 (24%), Positives = 218/502 (43%), Gaps = 80/502 (15%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R + S + A ++ V + ++++ + K +ILQ Sbjct: 4 RNCLPRLWARALAIALSLVLA-------APAQIVWGGVAPVAVRAAPRLALTIGKSVILQ 56 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 D+ V V+ P AD V+ SPR +Y+ G+ G N+ L K D+ + D + Sbjct: 57 SDADIARVSVAQPDVADFVLLSPRQIYVTGRAPGITNLTLWDKGDKIRAVYDLDVAPDAS 116 Query: 122 HLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L+ L + I V D++ L G VR + ++A+ L+E + + Sbjct: 117 RLKKMLHDVMPGETGIEVLASQDSIALSGTVRDAESLKKALSLAEVY------------A 164 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------- 233 KKV+NLL+++G QV L+V +AE+ + ++ ++G + G + Sbjct: 165 PKKVLNLLSVSGVQQVMLEVRVAEMSKSVVNRMGINLNAVGDGNFGYTLLGGLSTLADTV 224 Query: 234 ----------------FGGKFVSEGGDFSVK----------------------------- 248 F G S + + Sbjct: 225 FNIDNVQNAYKYSTIKFNGSDGSSSTESATIQTRFREFNQPEQSKTVGLSQGTAAMRFST 284 Query: 249 --GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 G + VL L++ ++ LAEP L ++GQSA F +GG+ V S G TS Sbjct: 285 NWGGAGNTTMTAVLDLLKQNGLVKILAEPNLVCLNGQSAKFLAGGEIPVP-VPSGLGTTS 343 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVEL 362 + ++GV L FTPT ++ I L++ EVS+ +++ ++P+ R+A T+VEL Sbjct: 344 IEWKEFGVGLKFTPT-VAGEVISLQVNPEVSDLDYTRAIKLDSFEIPAVLTRRASTSVEL 402 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +G T +AGLLK++ ++ + P + IP+LG LF++S + ++++E+ I T LVKP+ Sbjct: 403 KNGQTFAIAGLLKEEGRESVDKYPWIGDIPVLGNLFKSSSYQKDQSELVILITAHLVKPL 462 Query: 423 AMRDLSRPDDHYSVEDDAKAFF 444 +D+ P D DD + F Sbjct: 463 NKKDMILPTDGVHEPDDLEFFL 484 >gi|224824213|ref|ZP_03697321.1| type II and III secretion system protein [Lutiella nitroferrum 2002] gi|224603632|gb|EEG09807.1| type II and III secretion system protein [Lutiella nitroferrum 2002] Length = 520 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 143/518 (27%), Positives = 232/518 (44%), Gaps = 68/518 (13%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 + L +S A P + A I +++ + K L+ PV + Sbjct: 19 LATCGMLLLASYSQAATTTPKRLAATPSTVAPCNAIESAPLVNVTVGKSFRLKTPVPISR 78 Query: 69 VLVSDPT-----------------------------KADVVV--HSPRTMYLFGKNVGQA 97 +L+ +P ADV V SP +YL GK+VG Sbjct: 79 ILLGNPEGSQAAQPKESTDANADKGKPSAGGSTKSGVADVDVILLSPSEIYLLGKSVGST 138 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSN-IRVEMVSDTVVLHGMVRTIQ 155 N+IL+G +G+ L D+ + D A L+ +L + + +N ++V SD++VL G V Sbjct: 139 NIILLGRNGQCTLV-DVAVGADTASLQASLNQLLSPGANNVKVSAASDSLVLTGTVADSA 197 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 RA+ L+E + + KV+N++++ QV L+V IAE+ + +L ++G Sbjct: 198 KLDRAMTLAEAYAGK-----------SKVINMMSVDAPQQVLLEVKIAEISKKLLDKLGV 246 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + + G + S+ + F + G + G+ D + + A ++ LAEP Sbjct: 247 NIAGILNHGGWTYSWNSLFANDPL---GKALLSGINDSATRAFQIDAQHDDGLLKVLAEP 303 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 L AISGQ SF +GG+ ++T ++ ++GV L FTPTVL GRI L+ Sbjct: 304 NLMAISGQEGSFLAGGKIFIPVAQNNTNNGGSTITLEEKEFGVALRFTPTVLDGGRINLK 363 Query: 332 IQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + EVSE +PS+ R+A TTV+L G + + GLLK+++ Sbjct: 364 VAPEVSELNPEGVGISAIGVAGKSILPSFTTRRAATTVQLHDGQSFAIGGLLKNNVTTNI 423 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 P L +IPILGALFR++ F +++E+ TP LVKP+ D P D+Y + A+ Sbjct: 424 SAFPFLGEIPILGALFRSTSFQTDKSELVFVVTPRLVKPL-PPDYKLPTDNYIPPNRAEL 482 Query: 443 FFFNRVNKIYGPK------EASEVEGQNYKGAIGFIYK 474 F R+ EAS + + GF K Sbjct: 483 FLGGRMEGRQPEPSASKASEASPQPEASTQAPSGFEVK 520 >gi|237678812|emb|CAQ57539.1| RhcC2 protein [Bradyrhizobium elkanii] Length = 484 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 128/479 (26%), Positives = 209/479 (43%), Gaps = 18/479 (3%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG-KGKKISIGLNKVIIL 60 + + + L + + G +++ ++ + Sbjct: 18 SASRSAGLSRLCYVLCGFAMLFSSAAAAEIKRDGKGEPPRAAPGGTSGTLNLTSSQGKTV 77 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + + V+DPT AD S T+++FGK G+ ++ + +G+ + L +++ + I Sbjct: 78 HLTAAATSIFVADPTIADYQAPSNTTIFVFGKKSGRTSLFALNENGEALAELRVVVTQPI 137 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L TLR + D I V +L G + + A +++E FL + Sbjct: 138 EDLRATLRAEVGDYPIHVSYTPRGAILSGTAPNAEVVETAKKVTEQFLG----------A 187 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 V+N + +AG QV L V +AEV R +K + + S +G D G Sbjct: 188 GSLVVNKIQVAGSLQVNLSVRVAEVSRSAVKDLNIHFTA-SSPNGAFLISGKDGGSGAAG 246 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 GG + + VL AL LAEP LTA+SG+SASF +GG+ V Sbjct: 247 GGGTIGIGFSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESASFLAGGEFPIP-VMQ 305 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKA 356 SV +GV L F PTVL+ +I +R++ EVSE +N ++P+ R+A Sbjct: 306 DNRQVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKINGMEVPALSTRRA 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T VEL SG + + GL++ + P L +PILGALFR+S F + ETE+ I TP Sbjct: 366 STVVELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSFQKRETELVIIVTP 425 Query: 417 FLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 ++V+P +S P D + DA N + + ++A G+ GFI + Sbjct: 426 YIVRPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSAPGLTGSAGFIIE 484 >gi|308050059|ref|YP_003913625.1| type II and III secretion system protein [Ferrimonas balearica DSM 9799] gi|307632249|gb|ADN76551.1| type II and III secretion system protein [Ferrimonas balearica DSM 9799] Length = 487 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 115/426 (26%), Positives = 199/426 (46%), Gaps = 19/426 (4%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 + ++K + + + V V +P AD+++ +P+ +Y+ G+ +G N+++ + Sbjct: 47 SFPVPIHKSKTMSLANAAERVSVGNPAIADILLINPKELYILGRQLGSTNIMVWDDQDRL 106 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +DI I D+ L+ L RF+ D I V +V+ G V + A++L+ + Sbjct: 107 VDIVDIEITHDLNGLKEKLHRFLPDEPIEVHSSQGQLVIGGQVSNLDRMNMALDLAHGYA 166 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 + + ++ V+NL+++ G QV L+VT+ EV+R++ + + ++ G Sbjct: 167 VAANNSDNTST----VLNLMSVGGGHQVMLEVTVTEVQRELARTLDSDFALVF--EGSDF 220 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G +S G F V F+ + ++ R LAEP LT +SGQ A F Sbjct: 221 IGGLLGGDGLISNKGIFG-SYVSGDVLFDFAIDMAKQQGLARVLAEPNLTTMSGQMAEFL 279 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 SGG+ T++ ++GV + F PTVL GRI L + VSE G + Sbjct: 280 SGGEFPIPVPDRDG--TTIEYKEFGVGVKFVPTVLDSGRINLNLNVLVSELSNANAVGVI 337 Query: 349 P----------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P S R A++T+EL G TI +AGLL +++ + +P L +IP+LG LF Sbjct: 338 PEGSTTALVTPSITKRSANSTIELGDGQTIAIAGLLSSTVRESMDELPGLGEIPVLGQLF 397 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 + + ETE+ I TP LV+PV L P D + D + R++K + + Sbjct: 398 SSQEYRNGETELVILVTPRLVRPVDREKLVLPTDGFVDPTDLGFYLMGRLSKRDEDVQPN 457 Query: 459 EVEGQN 464 Sbjct: 458 TNPNSA 463 >gi|28899193|ref|NP_798798.1| putative pilus assembly transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836824|ref|ZP_01989491.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810] gi|260361569|ref|ZP_05774596.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030] gi|260876726|ref|ZP_05889081.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034] gi|260898195|ref|ZP_05906691.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466] gi|260900397|ref|ZP_05908792.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037] gi|28807417|dbj|BAC60682.1| putative pilus assembly transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749970|gb|EDM60715.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810] gi|308089085|gb|EFO38780.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466] gi|308091468|gb|EFO41163.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034] gi|308109123|gb|EFO46663.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037] gi|308114031|gb|EFO51571.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030] gi|328474270|gb|EGF45075.1| pilus assembly protein CpaC [Vibrio parahaemolyticus 10329] Length = 487 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 120/437 (27%), Positives = 205/437 (46%), Gaps = 24/437 (5%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 +++ G+ +S+ ++ L + + V + DP D+VV ++L GK +G Sbjct: 16 LSVHAATAQSGRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGT 75 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 NV + G+ + ++ + D+ L+ L +F+ D +I V + VVL G+V + Q+ Sbjct: 76 TNVSVWDSRGRLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQN 135 Query: 157 SQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 AV+++ETF ++ +++ V+NLL+I G QVTL+VT+AEV+R ++++ Sbjct: 136 MDIAVKIAETFALGDAADEEDDNAKDDESSVINLLSIGGAQQVTLEVTVAEVQRSLVRRF 195 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALE 264 S + GG F + F L + Sbjct: 196 DSNFHFFQKSGDFTWGATTAGGGIDNIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNEDG--ITIDYKEYGVQLDFVPFILS 313 Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 RI L++ VSE +P R A TT+EL G TI +AGLL Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++ + + +GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + Sbjct: 374 SENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRVTLPTDGF 433 Query: 435 SVEDDAKAFFFNRVNKI 451 +D + + + K+ Sbjct: 434 VAPNDVEFYLLGKGAKL 450 >gi|27365106|ref|NP_760634.1| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus CMCP6] gi|27361252|gb|AAO10161.1| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus CMCP6] Length = 488 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 111/454 (24%), Positives = 195/454 (42%), Gaps = 30/454 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + GK +++ +K + + + V + DP D+V+ ++L G+ +G N Sbjct: 17 TAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTN 76 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G + +++I + D+ L+ L F+ + I+V + ++L GMV T + Sbjct: 77 LMAWDSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMN 136 Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A+ ++ET+ + ++ S V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196 Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260 ++ S + G + + F L Sbjct: 197 DSNFHFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFAL 256 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 + + LAEP LTA+SG A F +GG+ S ++ +YGV L F P Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSDG--VTIEYKEYGVGLKFVP 314 Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 T+LS RI L + +VSE + +P R A +T+EL G TI + Sbjct: 315 TILSDKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGI 374 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++++ + +P IP+LG LF + + ETE+ I TP L KP+ ++ P Sbjct: 375 AGLLSENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLP 434 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 D + D K + I + Q Sbjct: 435 TDAFVEPSDLKYYLLGVGAYIAESPTNANAAAQP 468 >gi|317154605|ref|YP_004122653.1| type II and III secretion system protein [Desulfovibrio aespoeensis Aspo-2] gi|316944856|gb|ADU63907.1| type II and III secretion system protein [Desulfovibrio aespoeensis Aspo-2] Length = 478 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 133/475 (28%), Positives = 217/475 (45%), Gaps = 32/475 (6%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 R + + FL + +V+ L P+ A+ V+N + IS+ ++K IL Sbjct: 4 RPPRSFLLAFLMALAVTVSGLVPLAVADVDVLNTEAPGV-----ISLVVSKSTILTADAP 58 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 V V ++ P A VVV SP +Y+ G+ +G + L G+ D++I D+ L+ Sbjct: 59 VSRVSLAQPETASVVVLSPTQIYITGRKLGTTTLTLWS-GGQVSGVYDLVITPDVTRLKR 117 Query: 126 TLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 + + ++V +++ L G V D + L+E + KV Sbjct: 118 MIHEILPRERSVQVLSSGESITLSGSVSNTGDLTSVLSLAEA------------EAPGKV 165 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------GPSKSFAADFGGK 237 +NLL + G QV L+V +AE+ R LK++G + T S+ S Sbjct: 166 VNLLRVDGVQQVMLQVRVAEMSRTALKRMGINLAATFSNFTVYSFLNNLSSLANTGSNVI 225 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 +++ + V+ + +L AL+ R LAEP LT +SG+SA F GG+ Sbjct: 226 ELTDKINSVVRYNSGSTNVVGMLDALKAHGLARLLAEPNLTCVSGESADFLVGGEIPIPK 285 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRV 353 + G S+ +GV L FTPTVLS G I L + EVSE ++P+ Sbjct: 286 -PGALGTVSIEFKPFGVGLEFTPTVLSSGAINLHVSPEVSELDYTNALRYQGYEIPAIST 344 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 RKA T V+L G + +AGL+ + +++ P+L IP+LG LFR+S + + +TE+ I Sbjct: 345 RKASTVVDLADGQSFAIAGLISESLKENNHRFPVLGDIPVLGTLFRSSDYQKNKTELVII 404 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 T LVKP+ M + P D + D + + + G A+ V Q G+ Sbjct: 405 VTAHLVKPLDMAGQTLPGDGFKEPTDYEFYMLGLLEG-QGASPAAMVGAQARSGS 458 >gi|37680844|ref|NP_935453.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016] gi|37199593|dbj|BAC95424.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016] Length = 488 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 111/454 (24%), Positives = 195/454 (42%), Gaps = 30/454 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + GK +++ +K + + + V + DP D+V+ ++L G+ +G N Sbjct: 17 TAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTN 76 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G + +++I + D+ L+ L F+ + I+V + ++L GMV T + Sbjct: 77 LMAWDSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMN 136 Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A+ ++ET+ + ++ S V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196 Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260 ++ S + G + + F L Sbjct: 197 DSNFHFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFAL 256 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 + + LAEP LTA+SG A F +GG+ S ++ +YGV L F P Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSDG--VTIEYKEYGVGLKFVP 314 Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 T+LS RI L + +VSE + +P R A +T+EL G TI + Sbjct: 315 TILSDKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGI 374 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++++ + +P IP+LG LF + + ETE+ I TP L KP+ ++ P Sbjct: 375 AGLLSENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLP 434 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 D + D K + I + Q Sbjct: 435 TDAFVEPSDLKYYLLGVGAYIAESPTNANATAQP 468 >gi|320155489|ref|YP_004187868.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] gi|319930801|gb|ADV85665.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] Length = 488 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 109/436 (25%), Positives = 192/436 (44%), Gaps = 30/436 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + GK +++ +K + + + V + DP D+V+ ++L G+ +G N Sbjct: 17 TAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTN 76 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G + +++I + D+ L+ L F+ + I+V + ++L GMV T + Sbjct: 77 LMAWDSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMN 136 Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A+ ++ET+ + ++ S V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196 Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260 ++ S + G + + F L Sbjct: 197 DSNFHFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFAL 256 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 + + LAEP LTA+SG A F +GG+ S ++ +YGV L F P Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSDG--VTIEYKEYGVGLKFVP 314 Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 T+LS RI L + +VSE + +P R A +T+EL G TI + Sbjct: 315 TILSDKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGI 374 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++++ + +P IP+LG LF + + ETE+ I TP L KP+ ++ P Sbjct: 375 AGLLSENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLP 434 Query: 431 DDHYSVEDDAKAFFFN 446 D + D K + Sbjct: 435 TDAFVEPSDLKYYLLG 450 >gi|260776715|ref|ZP_05885610.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] gi|260607938|gb|EEX34203.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] Length = 476 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 109/451 (24%), Positives = 195/451 (43%), Gaps = 30/451 (6%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 K + + +K + + + V + DP D+V+ ++L GK +G N++ Sbjct: 9 AATQSSKVVKVPHHKSTHVTLVGKAKRVSLGDPEVLDIVMLKSNEVFLIGKKLGSTNLMA 68 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G+ + +++I + D+ L+ L F+ D I V + ++L G+V + A+ Sbjct: 69 WDSRGRLIESINIEVTHDLNSLKAKLFEFLPDEEIGVHSAQNRLILSGLVSSQSAMNIAL 128 Query: 162 ELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 ++ET+ + ++ S S++V +NLL I G QV L+VT+AEV+R ++++ Sbjct: 129 RVAETYAAGQEVDKETESLSEQVSKTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKFDSN 188 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG-------------GDFSVKGVLDRFSFETVLHAL 263 SS + + G + F L Sbjct: 189 FHFFQSSGDFNWGGTSAGGSIDDVNNVVAPIFNAPTIENTGLLGTLIDSNTFFTFALDIA 248 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 ++ + LAEP LTA+SG A F +GG+ ++ +YGV L F PT+L Sbjct: 249 KQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTIL 306 Query: 324 SPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + +I L + +VSE +P R A +T+EL G TI +AGL Sbjct: 307 TDQKINLNLAVDVSEIANSATLTLAPGGTNATYVIPPITRRSASSTLELADGQTIGIAGL 366 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L ++++ +P S IPILG +F + + ETE+ I TP L KP+ ++ P D Sbjct: 367 LSENVRDSVAEMPGFSDIPILGQMFNSQEYISGETELVILVTPRLAKPIDRNRVTLPTDS 426 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 + +D + + R + + ++ Sbjct: 427 FVEPNDFEYYLLGRGAYLEPADASKPKAERS 457 >gi|153834055|ref|ZP_01986722.1| Flp pilus assembly protein [Vibrio harveyi HY01] gi|148869610|gb|EDL68600.1| Flp pilus assembly protein [Vibrio harveyi HY01] Length = 486 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 121/436 (27%), Positives = 205/436 (47%), Gaps = 23/436 (5%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 ++++ GK +S+ ++ L + + V + DP D++V ++L GK +G Sbjct: 16 LSVNAAPAQSGKVVSVAHHQSTQLMISGKAKKVTLGDPEVLDIIVLRSNELFLVGKKLGT 75 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 NV + G+ + ++ + D+ L+ L +F+ D +I V + VVL G+V T Q+ Sbjct: 76 TNVSVWDSRGRLIEQFNVEVTHDLNTLKSKLYQFLPDESIEVHSAQEKVVLRGLVSTQQN 135 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 AV+++ETF + ++ + S V+NLL+I G QVTL+VT+AEV+R ++++ Sbjct: 136 MDTAVKIAETFAAGEAADEGEDDSKDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRRFD 195 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALER 265 S + GG F + F L + Sbjct: 196 SNFHFFQKSGDFTWGATTAGGGIDNIGPILNIPSVDDFGFLGSFIDSNTLFTFALDVARQ 255 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS Sbjct: 256 NGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNEDG--ITIDYKEYGVQLDFVPYILSD 313 Query: 326 GRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 RI L++ VSE +P R A TT+EL G TI +AGLL Sbjct: 314 KRINLKMNVNVSEIANSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLS 373 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 ++ + + +GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + Sbjct: 374 ENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFV 433 Query: 436 VEDDAKAFFFNRVNKI 451 +D + + + ++ Sbjct: 434 SPNDVEFYLLGKGAEL 449 >gi|323491532|ref|ZP_08096711.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546] gi|323314108|gb|EGA67193.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546] Length = 485 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 114/455 (25%), Positives = 199/455 (43%), Gaps = 30/455 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 ++ GK + + +K + + + V + DP D+V+ ++L GK +G N Sbjct: 17 VTYAASQSGKVVKVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDELFLIGKKLGSTN 76 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G+ + +++I + D+ L+ L F+ + +I V + ++L G + Sbjct: 77 LMAWDSRGQLIESINIEVTHDLNSLKAKLFEFLPNESIEVHSAQNRLILSGQISNQAAMN 136 Query: 159 RAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A+ ++ET+ + ++ S SK+ V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 137 IALRVAETYSAGRQADKENKSLSKQAEKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKF 196 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL----------DRFSFETVLHAL 263 + SS K G F F L Sbjct: 197 DANFAFFQSSGSKFKWGGTSTGATVPGATPIFEAPSTGDYGILGSFIDGNTLFTFALDVA 256 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + + LAEP LTA+SG A F +GG+ ++ +YGV L F PTVL Sbjct: 257 RQNGTAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTVL 314 Query: 324 SPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 S +I L + +VSE + +P R A +T+EL G TI +AGL Sbjct: 315 SDKKINLNLAVDVSEIANSSSLTLSPGSTNSTYIIPPITRRSASSTLELADGQTIGIAGL 374 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L ++++ + +P S IPILG +F + + ETE+ I TP L +P+ ++ P D Sbjct: 375 LSENVRDVANEMPGFSDIPILGQMFNSQEYVSGETELVILVTPRLAQPIDRNKVTLPTDS 434 Query: 434 YSVEDDAKAFFFNR---VNKIYGPKEASEVEGQNY 465 + +D + + R + +A V Y Sbjct: 435 FVEPNDFEYYLLGRGSYLAPASQASQAKPVAEPEY 469 >gi|149911409|ref|ZP_01900027.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36] gi|149805517|gb|EDM65522.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36] Length = 489 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 111/427 (25%), Positives = 191/427 (44%), Gaps = 20/427 (4%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 + I + K LQ+ + V V + AD+++ R +Y+ GK +G N+++ D Sbjct: 44 SVRIPIFKSKTLQMDKAIHRVSVGNSDIADILILRSRELYIVGKRLGTTNMMVWDKDDNL 103 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + ++ + D+ L L +++ + +I VE +V+ G V ++ AVE++E + Sbjct: 104 VHVQNLEVTHDLNSLRKRLYKYLPNEDIGVETSQGQLVVSGQVSSLVKMNTAVEIAEGYA 163 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSS 224 + + + + V+N++++ G QV L+VT+AEV DI + + + + Sbjct: 164 TAANVGKSNSI----VVNMMSVGGGQQVMLEVTVAEVSTDIGRNLDGNTVLGAFGSDGFA 219 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G S + + + F + + LAEP LTA+SGQS Sbjct: 220 GIGTGTGNVPTNILGSIDTNIFARYLTGDMLFSVAFDVAKSKGLTKILAEPNLTALSGQS 279 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341 A F SGG++ S+ ++ D+GV + F PTVL G+I L ++ VSE Sbjct: 280 AEFLSGGEYPVPV--STDDGITIEYRDFGVGVSFVPTVLDSGKINLNLKVLVSELSSVNS 337 Query: 342 -------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + PS R TTVEL G TIV+ GLL D +++ P L IPIL Sbjct: 338 VTISASDTNTSTITPSLIKRSTATTVELGDGQTIVIGGLLSDSLRESITKFPGLGDIPIL 397 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 G LF + + +TE+ I TP LV+P + P D + D + + ++ + Sbjct: 398 GQLFTSQEYISGQTELVIMVTPRLVRPFNKDGMILPTDGFVPVSDMEFYLLGKMTQQEKG 457 Query: 455 KEASEVE 461 + Sbjct: 458 SDTKNPN 464 >gi|283852073|ref|ZP_06369347.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] gi|283572463|gb|EFC20449.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] Length = 527 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 143/523 (27%), Positives = 229/523 (43%), Gaps = 82/523 (15%) Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69 +++ L + S AA ++ V + K+S+ + K +ILQ DV V Sbjct: 12 RLLAWVLVAGLASTGY--------AAPAVVAPVAVRSTPKLSLTIGKSVILQSDADVSRV 63 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 V+ P AD V+ SPR +Y+ G+ G N+ L K D+ + DI L+ L Sbjct: 64 SVAQPEIADFVLLSPRQVYVTGRAPGVTNLTLWDKGDKIRAVYDLDVAPDITRLKKMLHD 123 Query: 130 FIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + I V D + L G VR ++ ++A+ L+E + + KKV+NL+ Sbjct: 124 VLPGEPGIEVRASQDAIALAGTVRDAENMKKALTLAEVY------------APKKVVNLM 171 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIG----------FQHSITGSSSGPSKSF-------- 230 + G QV L+V +AE+ + +L ++G F +++ G + + S Sbjct: 172 AVGGVQQVMLEVRVAEMSKSVLNRMGINLNAIGDGNFAYTLIGGLTSVAGSMFNMDATQN 231 Query: 231 ----------AADFGGKFVSEGGDFSVK--------------------------GVLDRF 254 AD F S S + G Sbjct: 232 VYQYITMTAKGADGNTSFDSSPIQLSYREFNQPSNRATATMNQGTAVARWNTNWGGAGNT 291 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + VL L+ ++ LAEP L ++GQ+A F +GGQ V S G TS+ D+GV Sbjct: 292 AMTAVLDVLKENGLVKILAEPNLVCLNGQTADFLAGGQIPVP-VPSGLGTTSIEWKDFGV 350 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L FTPT++ RI L++ EVS+ I + +P+ R+ TTVEL +G T + Sbjct: 351 GLKFTPTIVGGDRINLQVHPEVSDLDYAHAIQLQGSTIPAINTRRTSTTVELKNGQTFAV 410 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AG+LK++ + + P++ IPILG LF++S+F +++TE+ I T L KP+ + +S P Sbjct: 411 AGMLKEEARSTFDKYPVVGDIPILGNLFKSSQFQKDQTELVILITAHLAKPLDKKAVSLP 470 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASE--VEGQNYKGAIGF 471 D DD + F R + A V G G G Sbjct: 471 TDSAHEPDDLEFFLGIRRDGGQATPAAGPLAVSGAALDGDFGH 513 >gi|304320647|ref|YP_003854290.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503] gi|303299549|gb|ADM09148.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503] Length = 494 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 144/502 (28%), Positives = 239/502 (47%), Gaps = 42/502 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MR + + L + PS+A+ + +++ + L K I+ Sbjct: 5 MRKILSVMAGLAGAVLIGTGPSMAQPGGSTPLEFETTYDAGGNGLASREVLLPLGKAAII 64 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 ++P D++VSDP + V+ +P+ ++L G+ GQAN Q+LNL+I +E+D Sbjct: 65 ELPRPATDIIVSDPDIVEAVIRTPQRVFLMGREAGQANAFFFDRANNQILNLEIRVEQDA 124 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + + + + ++ I VE ++ V++HG V D+QRA E++ F + Sbjct: 125 DTIRELMTKLVPNARISVESLNGNVIIHGTVDNASDAQRAGEIASRFAGE---------- 174 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFG 235 +N+L + QV LK+ I E++R +++Q+G + + FA A G Sbjct: 175 -DNFVNMLKVREPSQVLLKIKIVEMQRRLVRQLGIDLNGVAQVDRSAIEFAVQNSFAISG 233 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + S G D + + E+ ++TLAEP++ A+SG++ASF +GG+ Sbjct: 234 QSLGGINANLSTPGFGDITNLDFAFDIFEQNGLVKTLAEPSIVALSGRNASFLAGGEFPV 293 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------------- 341 S+ G SVT +GV L F P V S RI L + TEVS+ Sbjct: 294 PEA-SANGTPSVTFKPFGVQLEFQPVVYSKNRIQLTLATEVSDVSNVNGLSIAGATQAEE 352 Query: 342 ----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 +P R A TTVELPSGG++ LAGLL++DI ++ +G+P L + Sbjct: 353 DPDTGEIIEQTFEGFIVPGTVSRSAATTVELPSGGSLALAGLLQEDINEVIDGVPGLKET 412 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P+LGALFR+ F ++TE+ I ATP+LV+P + L+ P Y+ ++ ++ Sbjct: 413 PVLGALFRSQEFQSQQTELVIIATPYLVEPTDLAALTDPAQGYAPPSPVQSVILGQLESA 472 Query: 452 YGPKEASEVEGQNYKGAIGFIY 473 YG + + Q G IGFI Sbjct: 473 YGVRGRKARDAQ-LSGPIGFIL 493 >gi|197295153|ref|YP_002153694.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944632|emb|CAR57236.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 644 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 123/439 (28%), Positives = 215/439 (48%), Gaps = 18/439 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + + +++ L K +++ +P V++ + +P A + SP+T+Y+ G VG N+I+ Sbjct: 92 GAVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIV 151 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +L + + + +I V + T+VL G V + Q +Q+A Sbjct: 152 QGKSGACR-VIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQA 210 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V+++ + +G V+N+LN+ QV L+V +AEV + ++ Q+G +I Sbjct: 211 VQIAHAYGDSAGDAAGGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQ 270 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S + ++ S V + F A ++ LAEP L I Sbjct: 271 GGFGSWSGALVSNLLAGVASGA----VFNKANNRPFSIAADAQNTDNLVKILAEPNLVTI 326 Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SGQ A+F +GG+ SS T ++ ++GV L FTPTVL+ GRI L++ EVS Sbjct: 327 SGQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 386 Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E +P R+A TTV++ G + + GL+KD+ + IP + Sbjct: 387 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGV 446 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++P+LGALFR++ F ++ TE+ TP LVKP+ D++ P D +S ++ + + Sbjct: 447 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVYATGNM 506 Query: 449 NKIYGPKEASEVEGQNYKG 467 G ++A Q G Sbjct: 507 EGRGGVRKAGAQPMQPANG 525 >gi|78060314|ref|YP_366889.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383] gi|77964864|gb|ABB06245.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383] Length = 652 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 118/429 (27%), Positives = 210/429 (48%), Gaps = 18/429 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 92 GAVRESTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 151 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +L + + + +I V + T+VL G V + +Q+A Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQASLMQLMPNERDIHVSTAAGTIVLAGTVSSSMAAQQA 210 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 ++++ + +G + V+N+LN+ QV L+V +AEV + ++ Q+G +I Sbjct: 211 MQIARAYGDSAGDPAGGGKAGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSALNIQ 270 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S + ++ + + F A ++ LAEP L I Sbjct: 271 GGFGSWSGALVSNLLAGVATG----IAFSKANNKPFNLAADAQNTDNLVKILAEPNLVTI 326 Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EVS Sbjct: 327 SGQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLSNGRISLKVAPEVS 386 Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E +P R+A TTV++ G T + GL+KD+ + +P + Sbjct: 387 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMGDGETFAIGGLIKDNGTGALKALPGV 446 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 +IP+LGAL R++ F ++ TE+ TP LVKP+ D+ P D +S ++ + + Sbjct: 447 GEIPVLGALLRSTSFQQDRTELIFVITPHLVKPLQTADVPLPTDSFSKPNEVDVYATGNM 506 Query: 449 NKIYGPKEA 457 G ++ Sbjct: 507 EGRGGVRKP 515 >gi|91788411|ref|YP_549363.1| type II and III secretion system protein [Polaromonas sp. JS666] gi|91697636|gb|ABE44465.1| type II and III secretion system protein [Polaromonas sp. JS666] Length = 514 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 224/488 (45%), Gaps = 42/488 (8%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGK--------GKKISIGLNKVIILQVPVDVQ 67 L + NP A P K+A A + +I++ K ++++P Sbjct: 40 LAAKNPPTATSGPGKQAATAQPKAVVTQARAPITGKVELAPQINLSEGKSTLMRLPSPAT 99 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 + V D DV++ +P +Y+ GK+VG N+IL +DI + D L L Sbjct: 100 RLSVGDARIVDVILLNPSELYMLGKSVGSTNLILWNKANDA-TIIDIAVGMDTVALRSRL 158 Query: 128 RRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS------- 179 + A ++++ +DT++L GMV + + + + ++ ++ +S R+ A Sbjct: 159 EQMFASEKDLKITTAADTLILSGMVSDVVKADQILSVANAYVQRSSRSGQAGGASGGSAG 218 Query: 180 ----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 S KV+N+L+IA QV L+V +AEV + + Q+G ++ + + ++ Sbjct: 219 GQQSDSAKVVNMLSIAAPQQVMLEVQVAEVSKTLADQLGASIGGRKTTGSWTYTLLSNLL 278 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 S G G + A + ++ LAEPT+ AISGQ ASF +GG+ Sbjct: 279 TGAASSIGAVKNSGNF------LTIDAQKGDGLLKILAEPTIMAISGQEASFLAGGKIFI 332 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---------VIGVNAG 346 S + G ++ ++GV + F PTVL GRI L++ EVS+ Sbjct: 333 PVKSGNNGEIALEEKEFGVSVKFLPTVLEGGRINLKVAPEVSDLNRQGVGISATGSSTTA 392 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +PS+ R+A TTV+L G + + GL+K+++ PLL ++P+LGALFR+S F + Sbjct: 393 ILPSFTTRRASTTVQLFDGQSFAIGGLIKNNVTANINAFPLLGEVPVLGALFRSSDFQTD 452 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 +E+ TP LVKP+ D P D Y ++ F ++ P E ++ G Sbjct: 453 RSELVFIVTPHLVKPL-PADYKLPTDPYIQPSRSEFFLGGKMEGA-APPEGNKPAGPAT- 509 Query: 467 GAIGFIYK 474 GF K Sbjct: 510 ---GFEVK 514 >gi|107028248|ref|YP_625343.1| type II and III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116687159|ref|YP_840406.1| type II and III secretion system protein [Burkholderia cenocepacia HI2424] gi|105897412|gb|ABF80370.1| type II and III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116652874|gb|ABK13513.1| type II and III secretion system protein [Burkholderia cenocepacia HI2424] Length = 642 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 122/439 (27%), Positives = 215/439 (48%), Gaps = 19/439 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + + +++ L K +++ +P V++ + +P A + SP+T+Y+ G VG N+I+ Sbjct: 92 GAVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIV 151 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +L + + + +I V + T+VL G V + Q +Q+A Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQA 210 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V+++ + S + V+N+LN+ QV L+V +AEV + ++ Q+G +I Sbjct: 211 VQIAHAY-GDSAGDAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQ 269 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S + ++ S V + F A ++ LAEP L I Sbjct: 270 GGFGSWSGALVSNLLAGVASGA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTI 325 Query: 281 SGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SGQ A+F +GG+ S + + ++ ++GV L FTPTVL+ GRI L++ EVS Sbjct: 326 SGQEATFLAGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385 Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E +P R+A TTV++ G + + GL+KD+ + IP + Sbjct: 386 ELSQTGVTLSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGV 445 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++P+LGALFR++ F ++ TE+ TP LVKP+ D++ P D +S ++ F + Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVFATGNM 505 Query: 449 NKIYGPKEASEVEGQNYKG 467 G ++A Q G Sbjct: 506 EGRGGVRKAGAQPMQPANG 524 >gi|170734868|ref|YP_001773982.1| type II and III secretion system protein [Burkholderia cenocepacia MC0-3] gi|169820906|gb|ACA95487.1| type II and III secretion system protein [Burkholderia cenocepacia MC0-3] Length = 646 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 122/439 (27%), Positives = 215/439 (48%), Gaps = 19/439 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + + +++ L K +++ +P V++ + +P A + SP+T+Y+ G VG N+I+ Sbjct: 92 GAVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIV 151 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +L + + + +I V + T+VL G V + Q +Q+A Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQA 210 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V+++ + S + V+N+LN+ QV L+V +AEV + ++ Q+G +I Sbjct: 211 VQIAHAY-GDSAGDAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQ 269 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S + ++ S V + F A ++ LAEP L I Sbjct: 270 GGFGSWSGALVSNLLAGVASGA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTI 325 Query: 281 SGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SGQ A+F +GG+ S + + ++ ++GV L FTPTVL+ GRI L++ EVS Sbjct: 326 SGQEATFLAGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385 Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E +P R+A TTV++ G + + GL+KD+ + IP + Sbjct: 386 ELSQTGVTLSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGV 445 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++P+LGALFR++ F ++ TE+ TP LVKP+ D++ P D +S ++ F + Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVFATGNM 505 Query: 449 NKIYGPKEASEVEGQNYKG 467 G ++A Q G Sbjct: 506 EGRGGVRKAGAQPMQPANG 524 >gi|300021854|ref|YP_003754465.1| type II and III secretion system protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523675|gb|ADJ22144.1| type II and III secretion system protein [Hyphomicrobium denitrificans ATCC 51888] Length = 550 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 177/537 (32%), Positives = 258/537 (48%), Gaps = 77/537 (14%) Query: 11 MMSIFLFSSNPSVAKLPPIKE---------------ANAAVINISDVEIGKGKKISIGLN 55 + + L S+ P+ A+ + V + K I IGL Sbjct: 18 VFAAVLTSAAPTSAQSRAADRLSVRADRGDPEFSKNTQSIVRISESEGLPVRKSIKIGLG 77 Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 K ++++ P V+DV+ S+P D VV S ++L GK GQ+N + G+Q+ +++ Sbjct: 78 KSVLIEFPNGVRDVMASNPAVVDAVVLSSNRVFLLGKAPGQSNAFFFSNKGEQLALIELN 137 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 ++++ LEM LRR I S I+VE ++ T +L G V++ DS RA ++ F+SQ N Sbjct: 138 VDQEGDGLEMLLRRVIPGSEIKVETLNQTAILTGRVKSPSDSARASRIAAQFMSQMIANW 197 Query: 176 YAN--------------------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 +N K V+NLL + E+QV LKVT+AEV+R +LKQ+G Sbjct: 198 ASNVSLTSSGSGQQNKAGEVKDADDVKSVINLLTVEAEEQVMLKVTVAEVKRTLLKQLGI 257 Query: 216 QHSITGSSSGPSKSFAA------------------------------------DFGGKFV 239 SS S + + G Sbjct: 258 NLGGVLSSGSFSTTLLTENAFPISTAQGLGSLPTFGVGTAASAACAVGQICAFNPGPATG 317 Query: 240 SEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + G V G + + ++ + ALER I+TLAEP LTAISG+ A F +GG+ Y T Sbjct: 318 AFGNSGLVSGWGNSRNNIQSAVRALERDGLIKTLAEPNLTAISGEPAEFLAGGEVPYVTG 377 Query: 299 SSS-TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + TG ++V +GV L FTP VL+ GRI L+I T VS+ V P + R+A Sbjct: 378 VDTQTGVSAVAFKKFGVQLAFTPVVLTEGRISLKIDTSVSDISQYVAGN--PVFDTRQAK 435 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T VELPSGG++ LAGL+ QQ +G+P IPILG LFR+ F +E+E+ + TP+ Sbjct: 436 TVVELPSGGSLALAGLISTKTQQNIDGLPGAKDIPILGTLFRSRDFQNDESELVVIVTPY 495 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 LV+PVA + LS P D D KA F +N+IYG E KG GFI + Sbjct: 496 LVQPVARQQLSAPTDGLYPATDLKADFLGHLNRIYGKSE--VQPSGGLKGDYGFIVE 550 >gi|94309592|ref|YP_582802.1| type II and III secretion system protein [Cupriavidus metallidurans CH34] gi|93353444|gb|ABF07533.1| Flp pilus assembly protein secretin CpaC [Cupriavidus metallidurans CH34] Length = 620 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 115/447 (25%), Positives = 215/447 (48%), Gaps = 21/447 (4%) Query: 19 SNPSVAKLPPIKE-ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 S+A +P A A I + + + K ++ +P V++ + +P Sbjct: 60 MTISMAPVPAAPSIAADARGPNCSGAIRNESSVIVPIGKSQLIPLPEPVRNRTLGNPNVV 119 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NI 136 + SP+T+Y+ G++VG N+I+ G G +++++ D L+ +L + + I Sbjct: 120 QATMVSPQTLYVLGRSVGTTNMIVQGRSGGC-SIINVVVNADSNGLQTSLAQLLPGESGI 178 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 RV +D +VL G V + Q + +A+++++ + + + + AN V+N++++ QV Sbjct: 179 RVMTAADNLVLTGSVSSSQAALQAMDIAQAYANAAQGD-GANGKKGGVLNMMSVDTPQQV 237 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 L+V +AEV + +L Q+G +I G + ++ ++ + F Sbjct: 238 MLEVKVAEVSKTLLNQLGSAVNIQGGFGSWTGGVISNL----LTGAAAGIFGSKANNKPF 293 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDY 312 + A + + ++ LAEP L ISGQ ASF +GG+ S ++ ++ Sbjct: 294 NLAIDAQKNDSLVKVLAEPNLVTISGQEASFLAGGKIYIPVAQSNALGGASTITLQEEEF 353 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELP 363 GV L FTPTVL+ GRI L++ EVSE +P R+A TTV++ Sbjct: 354 GVGLKFTPTVLANGRIHLKVSPEVSELSPTGATVSGSTLTGQTILPLITTRRASTTVQMR 413 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G + + GLL+D + + +P ++P+LG LFR+++F ++ TE+ TP LVKP+ Sbjct: 414 DGESFAIGGLLQDSARGSLKALPGAGEVPVLGTLFRSTQFQQDLTELVFIITPHLVKPMQ 473 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNK 450 ++ P D ++ D +F + Sbjct: 474 TQNYPLPTDGFTTPDPLSLYFMGNMEG 500 >gi|260462607|ref|ZP_05810813.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259031513|gb|EEW32783.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 478 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 118/484 (24%), Positives = 213/484 (44%), Gaps = 33/484 (6%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 +Q ++ M + L + A+ DV ++ + +++ + +QV Sbjct: 1 MQGSWLRMGAAALSCLGALLLTSLAADAAD----RFIDVSNPSVHRVFLPMSQSVTIQVN 56 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 ++ D++V D AD + RT+Y+ GK G V L D + + + I + D++ + Sbjct: 57 ANLGDIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSTDKRSLGVIQIEVGVDVSDM 116 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 +R+ S I + ++ V L G V+ + +++++ + Sbjct: 117 AQAIRQVSPRSRIEIGSINGKVRLGGHVKDGATLEAIMQVAQQY------------GPDA 164 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG- 242 ++N + + QV L+V + E +R+ + +G GSS+ + A G Sbjct: 165 IINSVTVDDSQQVNLEVRVLEAKRNAGRDLGVSFRSRGSSATIFGTGIAATTPPGADPGT 224 Query: 243 ------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + + + ++ ALE +RTLA P LT +SG+ ASF +G Sbjct: 225 LVTGLLSKTNPFASLITQIIDSNIKVDLIIEALEAKGVVRTLANPNLTTLSGEPASFNAG 284 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 GQ ++V + G + +GV L FTP VL+ +I + + EVS+ +AGD P Sbjct: 285 GQVPIRSV-TKDGLIQIEYKQFGVNLQFTPIVLADDKIHISLAPEVSDLTGFTSAGD-PI 342 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + RK DT VEL G + + GLL +L+ +P L ++P++G LFRNS +EETE+ Sbjct: 343 FTNRKLDTVVELRDGQSFAVGGLLSSKTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETEL 402 Query: 411 FIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 + TP +V+PV L+ P D +D + F ++ + G G Sbjct: 403 VVIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQLE-VNKDMIRKYETGDGVTGPY 461 Query: 470 GFIY 473 G + Sbjct: 462 GHML 465 >gi|78062906|ref|YP_372814.1| type II and III secretion system protein [Burkholderia sp. 383] gi|77970791|gb|ABB12170.1| type II and III secretion system protein [Burkholderia sp. 383] Length = 460 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 141/489 (28%), Positives = 226/489 (46%), Gaps = 45/489 (9%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M + R + +S + A+ +A AA +SI K +L Sbjct: 1 MVRMVRWIACWCLACIVASGSAFAQGARAPDAGAA--------------LSIATGKGELL 46 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P + V+DP AD+ V SPRT+++FGK G +I +G + + +L ++++ D Sbjct: 47 SLPEPATAMFVADPAIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRKTVIVQVDT 106 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 A L+ L + V ++++ G V + D+ ++ +L Sbjct: 107 ASLQGVLDSRFPQLKLSVSGAPGSLMVSGKVPSAADADAVMQSLTPYLHDK--------- 157 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAAD 233 +K++N L ++ QV L+V + EV R+I +Q+G S G + F Sbjct: 158 -EKIVNRLTLSRPIQVNLRVRVTEVSRNITQQLGINWSSLGGAGNFVGGLFNGRTLFDPT 216 Query: 234 FGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G +S G FSV G R+S + VL AL++ I LAEP LTA+SG++ASF +GG Sbjct: 217 NGLFNLSPTGAFSVLGGFRAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGETASFLAGG 276 Query: 292 QHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345 + SSTGA +V +GV L FTPTVL+ RI L+++ EVSE + Sbjct: 277 EIPIPVAQAGSSTGAITVEFKPFGVSLDFTPTVLADNRISLKVRPEVSEIDTNNSVTTGG 336 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P VR+ DTTVEL SG + + GLL+ IP L ++PI+G LF + F Sbjct: 337 VKVPGLTVRRVDTTVELSSGQSFAIGGLLQSQTADTVSQIPGLGRLPIIGRLFSSKNFQD 396 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVE-DDAKAFFFNRVNKIYGPKEASEVEGQN 464 +TE+ + TP++V+P L + D + D + + + + Sbjct: 397 NKTEVVVIVTPYIVQPTGPGQLEQAIDTVARPSSDLEFAVQHNLGLDLLSGDT-----PR 451 Query: 465 YKGAIGFIY 473 GA GF+Y Sbjct: 452 LVGAAGFVY 460 >gi|16127175|ref|NP_421739.1| pilus assembly protein CpaC [Caulobacter crescentus CB15] gi|221235976|ref|YP_002518413.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus NA1000] gi|7208425|gb|AAF40192.1|AF229646_4 CpaC [Caulobacter crescentus CB15] gi|13424571|gb|AAK24907.1| pilus assembly protein CpaC [Caulobacter crescentus CB15] gi|220965149|gb|ACL96505.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus NA1000] Length = 560 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 142/502 (28%), Positives = 236/502 (47%), Gaps = 70/502 (13%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A V I + + K I+++P +V+D+LV++P AD V+ R +Y+ G Sbjct: 70 AEDQVARIVMTADQTAATLELAKGKSAIVELPSEVRDLLVTNPQIADAVLRDKRRIYIVG 129 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G + G+++L+L I + + + L L + + D+ I V + D+VVL G V Sbjct: 130 LAEGTTDAAFFDTAGRRILSLSIRVSQPVDQLAAMLGKILPDAKITVSPIRDSVVLSGTV 189 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 RT +++ A ++ F+ +KV+N++++AG+DQV L+V I EV+R+++K Sbjct: 190 RTASEAESAARIAAQFVGS----------PEKVLNMISVAGKDQVMLQVRIVEVQRNVIK 239 Query: 212 QIGFQHSI-------------TGSSSGPSKSFAADF------------------------ 234 Q+G + G + S Sbjct: 240 QLGVDLNAVIGQLGETQYTFGMAPGYGVNGSLLGGVTGGYKMDTTKQPVMQTPCTGPGWT 299 Query: 235 ----------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 GG S G S + ++ A ER +RTLAEP L A+SG+S Sbjct: 300 AGSLCPVVARGGGNSDTATIQSTAGDPGLNSAKGMIQAFERVGLVRTLAEPNLAAVSGES 359 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341 F GG+ T S ++G ++ YGV L +TP VLS GRI L++ TEVSE Sbjct: 360 GKFLVGGEFPVPTGSDTSGKVTIEFKPYGVGLGYTPVVLSGGRISLKLSTEVSELSSLGA 419 Query: 342 ---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 G +P VR+ ++TVELPSGG+++LAGLL+ ++ + +P ++ +P Sbjct: 420 FSMSTGTSSGSTNLTVPGLSVRRVESTVELPSGGSLMLAGLLQQTTKETIDSLPGMTSMP 479 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 ILG+LFR+ F +TE+ + TP+++ P ++L P D D R+NK+ Sbjct: 480 ILGSLFRSRDFLNNQTELVVIITPYIIDPTRPQNLQTPADGLQFASDMGTVLLGRLNKVV 539 Query: 453 GPKEASEVEGQNYKGAIGFIYK 474 A G+ Y+G +G++ + Sbjct: 540 KAP-AGANAGRAYQGPVGYVIE 560 >gi|83312840|ref|YP_423104.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum magneticum AMB-1] gi|82947681|dbj|BAE52545.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum magneticum AMB-1] Length = 495 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 144/461 (31%), Positives = 245/461 (53%), Gaps = 24/461 (5%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 ++ + + + + + K I L +P V++V++ + ADV+V +P Sbjct: 46 AAPSPRPGTPQSLRGLSSAAAESMQVPVGKSIDLPLPGAVKEVVIGNSDIADVIVRTPHM 105 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTV 145 +++ G+ VGQ NV L+ G+ M +D+ + D ++ LR + + I VE V+D++ Sbjct: 106 VHITGRAVGQTNVFLMDRSGRVMRRIDLAVAIDSQAVKDALRAVLPEERAITVEAVADSL 165 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L G V+ ++ A ++ F++ G K++N++ + E QV L V +AE+ Sbjct: 166 YLSGSVKNDGAARDAKMVARRFVADDG----------KLVNMIRVVNEQQVLLHVKVAEI 215 Query: 206 RRDILKQIGFQH------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 +R +LK++GF S+ G++S S + ++ G S F V + Sbjct: 216 QRTVLKELGFGLTANKSISLPGTASLSSFTTSSTVGLIDSSSTAIFGTATVTGLGALAAN 275 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + LE IRTL EP LTA+SG++A+ +GG+ VS++ G+ SV YGV+L FT Sbjct: 276 FNILENQGLIRTLVEPNLTAVSGETATMLAGGELPIP-VSTTNGSISVEFKPYGVLLSFT 334 Query: 320 PTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P VL PGR+ L++ TEVS +P+++VR+A +TVELPSGG+I++AGLL Sbjct: 335 PVVLDPGRLSLKMSTEVSAIDTANKTAITTTISVPAFKVRRAGSTVELPSGGSIMIAGLL 394 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++DI G+P L +P+LGALFR++ F R ETE+ + + ++++PV +LS P+D + Sbjct: 395 QNDITANIAGLPGLMDLPVLGALFRSNAFQRNETELVVILSAYVIRPVDQPNLSTPNDGF 454 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEV-EGQNYKGAIGFIYK 474 + D K F R+ Y + E +G G I + Sbjct: 455 APSSDLKRFLLGRLQDTYTTRGKGEPAAPPALQGPYGHIVQ 495 >gi|82703477|ref|YP_413043.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411542|gb|ABB75651.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 574 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 130/503 (25%), Positives = 216/503 (42%), Gaps = 49/503 (9%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG-------KGKKISIGLNKVIIL 60 ++ I L S A ++ + + + K +L Sbjct: 41 ITVLLGITLGLSGELSAANQTAAGQAMGRPMVAAAKPAGPVEGLLAASDMDVTYGKSALL 100 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDILI 116 ++P V + V +P ADV + SP +Y+ GK++G NVIL G Q +++ + Sbjct: 101 RLPAPVTRISVGNPDVADVTLISPGEIYVLGKSIGTTNVILWTRGGLAGSSQTAVINVTV 160 Query: 117 ERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ----- 170 D A L+ LR + +I+V D++VL G V + RAV L++ ++ Sbjct: 161 ILDAAALQAKLRELMPGETDIKVTAAGDSLVLSGTVSDTLKADRAVALADAYVRAAAGGQ 220 Query: 171 --------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + S +V+NLL + QV L+V +AE+ R + Sbjct: 221 GGQRGGKQGGDASGGQGGGDEPKGAGQGLGSVQVVNLLQVGSNQQVMLEVKVAEINRKVA 280 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 +++GF +G + + G G ++ A ++ Sbjct: 281 ERLGFDFQRAARKAGSAWTQI--MTGIIGGAPGMLFQSRGTPEIGDAFLIDAEKKDELFH 338 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP + AISGQ ASF GG+ + + T + + +GV L FTPTVL GRI L Sbjct: 339 ILAEPNIVAISGQEASFLVGGEVMIPIPQYAGVIT-LQSRQFGVGLRFTPTVLEEGRINL 397 Query: 331 RIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + EV+E V +P++ R+ TTV+L G ++ + GLL+D+I++ Sbjct: 398 VVSPEVTELVKFDTIATTGLGGVLAVPTFTTRRVSTTVQLRDGQSLAIGGLLQDNIKETI 457 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + P+L +IPILGALFR+S F +++TE+ + TP L+KP+ D + P D + D Sbjct: 458 KRFPVLGEIPILGALFRSSDFQKDKTELMVVVTPRLIKPLQP-DYALPTDAFVQPDRPDF 516 Query: 443 FFFNRVNKIYGPKEASEVEGQNY 465 F R+ + Y Sbjct: 517 LFDGRMEGSPTGLLPKGMPASEY 539 >gi|46201037|ref|ZP_00207939.1| COG4964: Flp pilus assembly protein, secretin CpaC [Magnetospirillum magnetotacticum MS-1] Length = 480 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 146/468 (31%), Positives = 238/468 (50%), Gaps = 26/468 (5%) Query: 22 SVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80 A P + A + + + + K + L +P V++V++ + ADV+ Sbjct: 24 LGAPSGPGQAQRAGTPRSLLGATAASAESMQVPVGKSVDLTLPGAVREVVIGNSDIADVM 83 Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVE 139 V SP +++ G+ VGQ NV L+ G+ M +D+ + D + LR + D I VE Sbjct: 84 VRSPNLVHITGRAVGQTNVFLVDRAGRVMRRIDLNVSIDSQAVRDALRAVLPDERAINVE 143 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 V+D++ L G V+ ++ A L+ F+++ K++NLL + E QV L Sbjct: 144 AVADSLYLSGSVKNDAAARDAKMLARRFVAEDA----------KLVNLLRVVNEQQVLLH 193 Query: 200 VTIAEVRRDILKQIGFQHSIT-------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 V +AE++R +LK++GF + S G ++ G S F + Sbjct: 194 VKVAEIQRTVLKELGFGLTANKGIPLIGSSVLGSGSKTSSTVGLIDSSSTAIFGTATITG 253 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + L+ LE IRTL EP LTA+SG++A+ +GG+ + GA SV Y Sbjct: 254 IGALAANLNILENQGLIRTLVEPNLTAVSGETATMLAGGELPIPIS-QTNGAVSVEFKPY 312 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGT 367 GV+L FTPTVL PGR+ L++ TEVS ++ +P+++VR+A +TVELPSGG+ Sbjct: 313 GVLLSFTPTVLDPGRLSLKMSTEVSAIDNNNKTAISSSISVPAFKVRRAGSTVELPSGGS 372 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 I++AGLL++DI G+P L +P+LG LFR++ F R ETE+ + + ++V+PV L Sbjct: 373 IMIAGLLQNDITSNITGLPGLMDLPVLGLLFRSNAFQRNETELVVILSAYVVRPVEQPVL 432 Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-GQNYKGAIGFIYK 474 P+D ++ D K F R+ Y + + +G G I + Sbjct: 433 GTPNDGFAPSSDLKRFLLGRLQDTYTKRSRELPATPPSLQGPYGHIVQ 480 >gi|114799376|ref|YP_761691.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444] gi|114739550|gb|ABI77675.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444] Length = 535 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 148/541 (27%), Positives = 250/541 (46%), Gaps = 77/541 (14%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 RT + + + P+ L + +++++G++K +I+ + Sbjct: 1 MRTIKALTCAAIVAILPAPFALAQTIPNGMGTSITKPGDQAVSRRVTLGVDKSMIVDLEA 60 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 DV++S+P AD VV + + + G GQ N ++ G +L+L+I++E D+A LE Sbjct: 61 PAADVVISNPEIADAVVQTAQRIIFRGIKFGQTNALIFDRAGNTLLDLNIMVETDLAALE 120 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 T+ R I D+ +++E + +V+L GMV + S + +L + F +S ++ Sbjct: 121 ETISRHIPDARVKIESFNGSVILTGMVDNLSQSDQVSQLVKAFFPESAGGGEL-----QI 175 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------- 219 +N+LN+ DQV L+V I E++R ++KQ+G S Sbjct: 176 VNMLNVNAADQVMLEVRIVEMQRSVIKQLGINLSGATSFGELANQTLQQVFQGGLPLFFD 235 Query: 220 ---------------------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 S+ + G E G + Sbjct: 236 PDSGEYNTTGQGTAVEMLQPAGPSSNTISGSASSGFNVQGQALGGISLETGYTNYNNGRL 295 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + S + A+ER +RTLAEP + A+SG+SA F +GG+ + G +V Y Sbjct: 296 QSSIGAAIDAMERVGIVRTLAEPNIVAMSGESAKFLAGGEFPVPVGQNQNGQITVEFKPY 355 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-------------------VNAGDMPSYRV 353 GV L FTP VLS GRI L++ TEVSE + +P+ V Sbjct: 356 GVGLAFTPVVLSEGRISLKVSTEVSELTSQGAFQGAAQTITDGDGNTTIIQGATLPALSV 415 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+A++ VELPSGG++++AGL+ +Q + +P L K+PILG+LF++ F EETE+ + Sbjct: 416 RRAESVVELPSGGSMMMAGLISVKDRQTIDQLPGLKKLPILGSLFQSRDFLSEETELVVM 475 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 TP+LV + P D Y+ DAK FF ++N+ YG A ++ +Y+ +GF+ Sbjct: 476 VTPYLVGATNKASMVTPADGYANASDAKTIFFGKLNETYGRDGAP-IKPDDYRAPVGFME 534 Query: 474 K 474 + Sbjct: 535 E 535 >gi|325525578|gb|EGD03368.1| flp type pilus assembly protein [Burkholderia sp. TJI49] Length = 545 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 122/433 (28%), Positives = 214/433 (49%), Gaps = 18/433 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 91 GAVRESSSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 150 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +L++ + + +I V + T+VL G V Q +Q+A Sbjct: 151 QGRSGACR-VIDVAVGADAGGLQTSLQQLMPNERDIHVSTAAGTIVLAGSVSNSQAAQQA 209 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V ++ + +G V+N+L++ QV L+V +AEV + ++ Q+G +I Sbjct: 210 VAIARAYGDSAGSGDAGGKPGSGVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQ 269 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S + ++ S +R F+ A ++ LAEP L I Sbjct: 270 GGFGSWSGALVSNLLAGVASG----IAVSKSNRRPFQIAADAQNTDNLVKILAEPNLVTI 325 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SGQ A+F +GG+ SS G + ++GV L FTPTVL+ GRI L++ EVS Sbjct: 326 SGQEATFLAGGKIFIPVPQSSGGNATTITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385 Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E A +P R+A TTV++ G + + GL+KD++ + IP + Sbjct: 386 ELSSTGVTLSATNVSGASILPLITTRRASTTVQMNDGESFAIGGLIKDNVTGALKAIPGV 445 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++P+LGALFR++ F ++ TE+ TP LVKP+ + D+ P D +S ++A + + Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPMQIADVPLPTDSFSKPNEADVYATGNM 505 Query: 449 NKIYGPKEASEVE 461 G + Sbjct: 506 EGRRGVRRQGAEA 518 >gi|167589424|ref|ZP_02381812.1| type II and III secretion system protein [Burkholderia ubonensis Bu] Length = 460 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 135/488 (27%), Positives = 226/488 (46%), Gaps = 43/488 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M + R + + + A+ + +A A +++ K +L Sbjct: 1 MVRMVRWIALWCMACVAAPGVAFAQRASVPDAGAP--------------LTLAAGKGDLL 46 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P + V+DP+ AD+ V SPRT+++FGK G +I +G + + +L ++++ D Sbjct: 47 SLPEPAATMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQADT 106 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L+ L ++V ++++ G V + D+ ++ +L Sbjct: 107 PSLQRVLDSRFPQWQLKVSGAPGSLMVSGKVPSGADADAVMQSLAPYLQDK--------- 157 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAAD 233 +K++N L ++ QV L+V + EV R+I +Q+G S G S F Sbjct: 158 -EKLVNRLTLSRPIQVNLRVRVTEVSRNITQQLGINWSGLGGSGNFIGGLFNGRTLFDPT 216 Query: 234 FGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 +S G FSV G R+S + VL AL++ I LAEP LTA+SG++ASF +GG Sbjct: 217 TSLFNLSPTGAFSVLGGFRAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGETASFLAGG 276 Query: 292 QHLYKTVSS--STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347 + S +TGA +V +GV L FTPTVL+ RI L+++ EVSE + Sbjct: 277 EIPIPVAQSGTTTGAITVEFKPFGVSLDFTPTVLAENRISLKVRPEVSEIDPTNSVTTGG 336 Query: 348 --MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ VR+ +TTVEL SG + + GLL+ + IP L ++P+LG LF + F Sbjct: 337 VKVPALSVRRVETTVELSSGQSFAIGGLLQSQTSDVVSQIPGLGRLPVLGRLFSSKNFQD 396 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 +TE+ + TP++V+P L + D + F R + + Sbjct: 397 NKTEVVVIVTPYIVQPAGPGQLEQAIDTVARPSSDLEFAVQRNLGLDLLSG----DTPRL 452 Query: 466 KGAIGFIY 473 GA GF+Y Sbjct: 453 VGAAGFVY 460 >gi|12620550|gb|AAG60826.1|AF322012_131 RhcC2 [Bradyrhizobium japonicum] Length = 484 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 127/476 (26%), Positives = 211/476 (44%), Gaps = 21/476 (4%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 L R + + L P A ++ + + ++I ++ + + Sbjct: 25 LNRLCYLLCGFALL--FPLAASAETKRDGKGEMPRAAPG--STTGTLNITSSQGKTVHLS 80 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + V+DP AD S T+++FGK G+ ++ + +G+ + L I++ + + L Sbjct: 81 APAATIFVADPAIADYQAPSSSTIFVFGKKSGRTSLFALNENGEALAELRIVVTQPLEDL 140 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 L+ + D I+V +L G+ + A +++E F+ + Sbjct: 141 RAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVEAARKVTEQFVG----------AGAP 190 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 V+N + +AG QV L V +AEV R +K + + +G + G + G GG Sbjct: 191 VVNKIQVAGSLQVNLSVRVAEVSRTAVKDLNINFTASGPN-GAFLATGKPGGSGRAGGGG 249 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + + VL AL LAEP LTA+SG++ASF +GG+ V Sbjct: 250 TIGIGFSTGNINLSAVLDALASEHLASILAEPNLTAMSGEAASFLAGGEFPIP-VMQDNR 308 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTT 359 SV +GV L F PTVLS +I +R++ EVSE +N +P+ R+A T Sbjct: 309 QVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSELSTEGEVKINGMAVPALSTRRASTV 368 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VEL SG + + GL++ + P L +PILGALFR+S F + ETE+ I TP++V Sbjct: 369 VELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPILGALFRSSSFQKRETELVIVVTPYIV 428 Query: 420 KP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +P +S P + + DA N V + ++A G GFI + Sbjct: 429 RPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQGRDAPRASAPGLTGNAGFIIE 484 >gi|148976662|ref|ZP_01813349.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium SWAT-3] gi|145964013|gb|EDK29271.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium SWAT-3] Length = 456 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 111/438 (25%), Positives = 196/438 (44%), Gaps = 27/438 (6%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + +K + + V + DP D+V+ ++L GK +G N++ G+ + + Sbjct: 1 MPHHKSTHVVLSGKASKVSLGDPEVLDIVILKSNEVFLIGKKLGATNLMAWDARGQLIES 60 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 ++I + D+ L+ L F+ D I V + ++L G + Q A+ ++ET+ + Sbjct: 61 INIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQISNQQKMNVAMRIAETYAAGQ 120 Query: 172 GRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 ++ S S++ V+NL++I G QV L+VT+AEV+R ++++ +S Sbjct: 121 AADETKESGSEQAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQTSGSN 180 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPT 276 A + F + D F L ++ + LAEP Sbjct: 181 FSWGGASVPAGVLGATPIFDIPTSTDYGILGSFIDSNTLFTFALDVSKQNGVAKVLAEPN 240 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 LTA+SG A F +GG+ ++ +YGV L F PTVLS +I L + +V Sbjct: 241 LTALSGSKAEFLAGGEFPIPVP--DDDGITIEYKEYGVGLKFIPTVLSDQKINLNLAVDV 298 Query: 337 S----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 S +P +P R A +T+EL G TI +AGLL ++++ + + Sbjct: 299 SEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDISNKML 358 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + +PILG LF + + ETE+ I TP L KPV ++ P D + +D + + Sbjct: 359 GIGDVPILGQLFNSQEYVSGETELVILVTPRLAKPVDRSKVTLPTDAFVDPNDLEYYLLG 418 Query: 447 RVNKIYGPKEASEVEGQN 464 R I P ++ + + Sbjct: 419 RSAYIAEPSDSEDNSSAS 436 >gi|115361033|ref|YP_778170.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] gi|115286361|gb|ABI91836.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] Length = 657 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 119/434 (27%), Positives = 211/434 (48%), Gaps = 18/434 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + +++ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 92 GAVRDATSVTVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 151 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +L++ + +I V + T+VL G V Q +Q+A Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQA 210 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V+++ + +G V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 211 VQIAHAYSDSAGEGAGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGTAFNIQ 270 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S + ++ S G + + F A ++ LAEP L I Sbjct: 271 GGFGSWSGALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTI 326 Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SGQ A+F +GG+ SS T ++ ++GV L FTPTVL+ GRI L++ EVS Sbjct: 327 SGQEATFLAGGKIFIPVPQSSGTGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 386 Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E +P R+A TTV++ G + + GL+KD+ + IP + Sbjct: 387 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGSLKAIPGV 446 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D +S + + + Sbjct: 447 GEVPVLGALFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFSKPSEIDVYATGNM 506 Query: 449 NKIYGPKEASEVEG 462 G ++A+ Sbjct: 507 EGRKGVRKATMQPS 520 >gi|170750189|ref|YP_001756449.1| type II and III secretion system protein [Methylobacterium radiotolerans JCM 2831] gi|170656711|gb|ACB25766.1| type II and III secretion system protein [Methylobacterium radiotolerans JCM 2831] Length = 546 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 148/497 (29%), Positives = 244/497 (49%), Gaps = 55/497 (11%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 A V+ + E +++ + + +I+ +P D ++V V++P A+ VV S R +++ G Sbjct: 50 PAPVLTVGAAEANTTRRVELTAGRSVIVDLPRDAKEVFVANPAVANAVVRSTRKVFVIGM 109 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIA--HLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G ++ ++ +G+Q+ LD+ + RD+ L L + I V +V+L G Sbjct: 110 ADGATSIFIMDAEGRQIAALDVTVARDLNLGTLRELLSQSIPGGRFDVRSSGASVLLSGA 169 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANS----------SSKKVMNLLNIAGEDQVTLKV 200 V + D+Q+A++++ F+ G + S V+N L I +DQV L+V Sbjct: 170 VNSSSDAQQAIDIANAFVGLGGGGAAGPAGAASGGVAAGSRGAVINNLTIRNKDQVMLRV 229 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------------- 241 T+ EV R++LKQ G + S+ P + + Sbjct: 230 TVVEVSRNVLKQFGINMAGNWSALNPVGNLGQTVVNGGTAAATQVPAYLPNVITNNLPFP 289 Query: 242 -------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G FS + L A E+A R LAEPTLTAISG++A F +GG+ Sbjct: 290 INTNTPSGNLIQASVQGGGFSLQATLKAFEQAGVSRILAEPTLTAISGEAAKFLAGGEFA 349 Query: 295 YKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------G 342 + + +T YGV L FTPTVL+ RI +R+ T+V+E G Sbjct: 350 VPASATCAVGGVCSPGITYKPYGVALSFTPTVLADNRISIRVATDVTEIDTQQSFSYVIG 409 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + +P RVR+++TTVELPSGG ++ AGL++ +Q G+P L +PILGALFR+ Sbjct: 410 NTSVAVPGTRVRRSETTVELPSGGVMMTAGLIQQFNKQAIAGLPGLINLPILGALFRSRD 469 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE- 461 + R+ETE+ I TP++ +P+ + +SRPDD++ D + ++N+IYG Sbjct: 470 YQRQETELMIMCTPYIARPMEPKQVSRPDDNFVDASDGQTVLLGQINRIYGKVAPPGATA 529 Query: 462 ----GQNYKGAIGFIYK 474 G+ Y+G +GFI + Sbjct: 530 AAPLGRAYRGRVGFIVE 546 >gi|257141104|ref|ZP_05589366.1| type II and III secretion system protein [Burkholderia thailandensis E264] Length = 826 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 124/433 (28%), Positives = 216/433 (49%), Gaps = 21/433 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 +G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 94 GAMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212 Query: 161 VELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 V +++ + ++ V+N+L + QV L+V +AEV + ++ Q+G Sbjct: 213 VAIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAV 272 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 ++ G + + ++ G+ ++ + A ++ LAEP L Sbjct: 273 NLQGGFGSWTGALVTSL----LTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRL 328 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334 ISGQ A+F +GG+ SS TS ++GV L FTPTVLS GRI L++ Sbjct: 329 VTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAP 388 Query: 335 EVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 EVSE +P R+A TTV++ G T + GL+KD+ Q + + Sbjct: 389 EVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKAL 448 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A + Sbjct: 449 PGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYAT 508 Query: 446 NRVNKIYGPKEAS 458 + G ++ Sbjct: 509 GNMEGRGGLRQHG 521 >gi|220918104|ref|YP_002493408.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955958|gb|ACL66342.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 477 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 131/491 (26%), Positives = 224/491 (45%), Gaps = 44/491 (8%) Query: 11 MMSIFLFSSNPSVAKLPPIK-EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69 M++ L + LPP++ A A D +G G ++++ + +L + ++ V Sbjct: 1 MIAHTLLALALFATPLPPVELAAGALPPLRIDRSVGAGSELALEAGQNRLLIISEEIGRV 60 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 V+DP+ AD+ V + + L K+ G ++ L + + + +++ R++ L ++ Sbjct: 61 AVADPSVADLKVVTTNQLLLTAKSSGTTDLTLWNRSNEPL-VIALVVTRNLEPLRKQVKD 119 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + + + V+L G V ++ +R VE+++ +K+V NL+ Sbjct: 120 LFPGEKVTITGAGELVILSGEVSDVRIPERLVEVAK-------------LHAKQVANLVK 166 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQH-----------SITGSSSGPSKSFAADFGGKF 238 ++G QV L+V AEV R L+QIG +TG P+ G Sbjct: 167 VSGNQQVQLEVRFAEVSRSGLRQIGVNLFHQSSNGEVVTGMTGRGIIPTDLGVPGTGTAG 226 Query: 239 VS---------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G V + F F +L LE+ +TLAEPTL +SGQ A F + Sbjct: 227 APPPIFRPQFNNGFSMFVSSLSGDFPFSAMLSLLEQNGLSKTLAEPTLVTLSGQQARFVA 286 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNA 345 GG+ S G T V +G++L FTPTV++ I L ++ EVS+ + Sbjct: 287 GGELPIPLG-GSFGQTQVEWKKFGILLDFTPTVIAGDTIHLDLKAEVSDIDQSLAITIGG 345 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P R+++TT+ L G + +AGLL D ++ E +PLL IPILGALFR++++ R Sbjct: 346 TTIPGLTSRQSETTIRLGDGQSFAIAGLLSDRVRSQIERVPLLGSIPILGALFRSTQYKR 405 Query: 406 EETEIFIAATPFLVKPVAMRDL-SRPDDH-YSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 EE+E+ + T L +PVA L P + + D + F + ++ Q Sbjct: 406 EESELLVVVTARLARPVAPHQLPPLPTERELNHPGDIELFLLGWDDGGKQVPRSAPSTRQ 465 Query: 464 NY--KGAIGFI 472 GA GF+ Sbjct: 466 AGGPSGARGFV 476 >gi|261252087|ref|ZP_05944660.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] gi|260935478|gb|EEX91467.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] Length = 480 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 117/449 (26%), Positives = 198/449 (44%), Gaps = 31/449 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 IS GK +++ +K + + + V + DP D+V+ ++L GK +G N Sbjct: 10 ISFAATQSGKIVTVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDEVFLIGKKLGSTN 69 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G+ + +++I + D+ L+ L F+ D I+V ++L G V + Sbjct: 70 LMAWDSRGQLIESINIEVTHDLNSLKAKLFEFLPDEEIKVHSAQHRLILSGQVSSQSVMN 129 Query: 159 RAVELSETFLSQSGRNQY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A+ ++ET+ + ++ +S V+NLL I G QV L+VT+AEV+R ++++ Sbjct: 130 IALRVAETYSAGKEADKGKSSLSNQVNSTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKF 189 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG--------------DFSVKGVLDRFSFETV 259 +S G GG + F Sbjct: 190 DANFHFFQTSGGEFSWGGTSAGGVIDDVNNVIGPIFNAPGVESTGLLGTFIDSNTLFTFA 249 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ++ + LAEP LTA+SG A F +GG+ S ++ +YGV L F Sbjct: 250 LDIAKQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVPSEDG--ITIEYKEYGVGLKFI 307 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIV 369 PTVLS +I L + +VSE +P R A +T+EL G TI Sbjct: 308 PTVLSDKKINLNLAVDVSELATSTTLTLNPGATNGTYVIPPITRRSASSTLELADGQTIG 367 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 +AGLL ++++ + E +P S IP+LG +F + + ETE+ I TP L KP+ R ++ Sbjct: 368 IAGLLSENVRDVVEEMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRRRITL 427 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 P + + +D + + R I E Sbjct: 428 PTESFVEPNDFEYYLLGRGAYIAPASEQK 456 >gi|254229332|ref|ZP_04922749.1| putative phospholipid-binding domain family [Vibrio sp. Ex25] gi|262393417|ref|YP_003285271.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio sp. Ex25] gi|151938140|gb|EDN56981.1| putative phospholipid-binding domain family [Vibrio sp. Ex25] gi|262337011|gb|ACY50806.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio sp. Ex25] Length = 487 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 121/437 (27%), Positives = 207/437 (47%), Gaps = 24/437 (5%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 ++++ + GK +++ ++ L + + V + DP D++V ++L GK +G Sbjct: 16 LSVNAATVQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGT 75 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 NV + G+ + ++ + D+ L+ L +F+ D NI V + VVL G+V + Q+ Sbjct: 76 TNVSVWDRRGRLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQN 135 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 AV+++ETF ++ +SS V+NLL+I G QVTL+VT+AEV+R ++++ Sbjct: 136 MDTAVKIAETFALGEAADEEDDSSKDDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRRF 195 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALE 264 S + GG F + F L + Sbjct: 196 DSNFHFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNEDG--ITIDYKEYGVQLDFVPFILS 313 Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 RI L++ VSE +P R A TT+EL G TI +AGLL Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++ + + +GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + Sbjct: 374 SENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGF 433 Query: 435 SVEDDAKAFFFNRVNKI 451 +D + + + ++ Sbjct: 434 VAPNDVEFYLLGKGAEL 450 >gi|269966892|ref|ZP_06180965.1| Flp pilus assembly protein [Vibrio alginolyticus 40B] gi|269828559|gb|EEZ82820.1| Flp pilus assembly protein [Vibrio alginolyticus 40B] Length = 487 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 121/437 (27%), Positives = 205/437 (46%), Gaps = 24/437 (5%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 ++++ GK +++ ++ L + + V + DP D++V ++L GK +G Sbjct: 16 LSVNAATAQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGT 75 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 NV + G+ + ++ + D+ L+ L +F+ D NI V + VVL G+V + Q+ Sbjct: 76 TNVSVWDRRGRLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQN 135 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 AV+++ETF ++ +SS V+NLL+I G QVTL+VT+AEV+R ++++ Sbjct: 136 MDTAVKIAETFALGEAADEEDDSSKDDESMVINLLSIGGAQQVTLEVTVAEVQRTLVRRF 195 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALE 264 S + GG F + F L + Sbjct: 196 DSNFHFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNEDG--ITIDYKEYGVQLDFVPFILS 313 Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 RI L++ VSE +P R A TT+EL G TI +AGLL Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++ + + GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + Sbjct: 374 SENARNVANGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGF 433 Query: 435 SVEDDAKAFFFNRVNKI 451 +D + + + ++ Sbjct: 434 VAPNDVEFYLLGKGAEL 450 >gi|83859357|ref|ZP_00952878.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633] gi|83852804|gb|EAP90657.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633] Length = 529 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 150/540 (27%), Positives = 258/540 (47%), Gaps = 77/540 (14%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK---GKKISIGLNKV 57 M +T + + P+ A+L + + + E G + + + L + Sbjct: 1 MARFSQTLCAVALMAAACVCPAEAQLSGGRTEANNTLQVHIREPGAGPASESLQLPLGQA 60 Query: 58 IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 ++ +P D DV++++ A VV + R ++ G+ VG+ N+ DG +L+L++ +E Sbjct: 61 AVIHLPEDAADVVIANDEVASAVVRTTRRAFVMGQAVGRTNIFFFNADGGLILDLNVRVE 120 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 RDIA L+ L RF+ + I+ E ++ +VL G V + + A+++++ ++ Sbjct: 121 RDIAALQDALDRFVPEGRIQAESMNANIVLSGQVPSAAAADTALQVAQRWV--------- 171 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------ 219 + ++V++ L + G DQVTL+V I E+ R +++Q+G S Sbjct: 172 -DTPEQVVSFLTVEGRDQVTLQVRIVEMERTLVRQLGVNLSGEQAFGEFTPTVRTAATND 230 Query: 220 -----------------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--RF 254 + G S +F G + V + Sbjct: 231 RGDPLFDQNGAPIYEVYQQGRFQNSAGWGTSNAFGVAGAALGGLTGTLGTQNLVDGVLQS 290 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 S L+ALER +RTLAEP +TAISG+ A F +GG+ G ++ +GV Sbjct: 291 SISATLNALERVGLVRTLAEPNITAISGEPAQFLAGGEFPVPVGRDRDGNVTIEFKPFGV 350 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE--------------------PVIGVNAGDMPSYRVR 354 L FTP VLS GRI LR+ TEVSE V +P+ V Sbjct: 351 GLGFTPVVLSEGRISLRVSTEVSELSNEGAISLNSQVITDDQGNVTGTVQGVTIPALSVN 410 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +A+TTVELPSGG++V+AGL++++ +Q + +P + ++P+LG+LFR+ F ETE+ + Sbjct: 411 RAETTVELPSGGSMVIAGLIREETRQAMDSVPGIERMPVLGSLFRSRDFANNETELVVVV 470 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 TP+LV P+ D+ P + ++V A F R+N++Y A +VE + + G IGF+ + Sbjct: 471 TPYLVDPLNPNDVESPAEGFAVSSLAAGAFLGRLNRVYAAPGA-QVENRGWSGPIGFVLE 529 >gi|13475417|ref|NP_106981.1| pilus assembly protein [Mesorhizobium loti MAFF303099] gi|14026169|dbj|BAB52767.1| pilus assembly protein [Mesorhizobium loti MAFF303099] Length = 481 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 119/483 (24%), Positives = 207/483 (42%), Gaps = 35/483 (7%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 F+ M+ S ++ + +A I++S+ + ++ + +++ + + V + Sbjct: 4 FWVRMAAVALSCFATLPTWSLVADAADRFIDVSNPSV---HRVFLPMSQSVTIAVNATLG 60 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 D++V D AD + RT+Y+ GK G V L + + + + I + D++ + + Sbjct: 61 DIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSPEKRSLGVIQIEVGVDVSDMAQAI 120 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 R+ S I V V+ V L G V+ +E+++ + ++N Sbjct: 121 RQVAPRSRIEVASVNGRVRLGGHVKDGVTMAAILEVAKQY------------GPDDIINS 168 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----------------SKSFA 231 + I QV L+V I E +R+ + +G S S Sbjct: 169 VTIDDSQQVNLEVRILEAKRNAGRDLGVSIRSNNSRSTTIVGTGIAAVDKDNVVLGTGGF 228 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + G + + + + + ALE A+RTLA P LT +SG+ ASF +GG Sbjct: 229 LSDLLSTSTPFGALLTRVIDNNIKVDLYIEALEAKGAVRTLANPNLTTLSGEQASFNAGG 288 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 + G S+ +GV L FTP VL G+I + + EVS+ AGD P + Sbjct: 289 EVP-IRTLDKNGEISIVYKQFGVNLLFTPVVLDDGKIHMNLAPEVSDLNGFTTAGD-PIF 346 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 RK T VEL G + + GLL +L+ +P L ++P++G LFRNS +EETE+ Sbjct: 347 TNRKLSTVVELRDGQSFAVGGLLSSRTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETELV 406 Query: 412 IAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 + TP +V+PV L+ P D +D + F ++ + G G G Sbjct: 407 VIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQLE-VNKDMIRRYETGDGVTGPYG 465 Query: 471 FIY 473 + Sbjct: 466 HML 468 >gi|172062959|ref|YP_001810610.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] gi|171995476|gb|ACB66394.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] Length = 460 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 43/488 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M + R + + ++A+ +A A +SI K +L Sbjct: 1 MVRMVRWIAVWCLACIVAPGVALAQRAHAADAGAP--------------LSIATGKGEML 46 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + + V+DP+ AD+ V SPRT+++FGK G +I +G + + +L ++++ D Sbjct: 47 SLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQVDT 106 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 A L+ L + V ++++ G V + D+ ++ +L+ Sbjct: 107 ASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTPYLNDK--------- 157 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV- 239 ++++N L ++ QV L+V + EV R++ +Q+G S G++ Sbjct: 158 -ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLGINWSSLGAAGNFIGGLFNGRTLMDPT 216 Query: 240 ------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 S G +SV G R+S + VL AL++ I LAEP LTA+SGQ+ASF +GG Sbjct: 217 TKLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGQTASFLAGG 276 Query: 292 QHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345 + ++TGA +V +GV L FTPTVL+ RI L+++ EVSE + Sbjct: 277 EIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRISLKVRPEVSEVDANNSVTTGG 336 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P VR+ +TTVEL SG + + GLL+ IP L ++PI+G LF + F Sbjct: 337 VTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTANTVSQIPGLGRLPIIGRLFSSKNFQD 396 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 +TE+ + TP++V+P L + D + F R + + Sbjct: 397 NKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSDLEFAVQRNLGLDLMSGETPRP---- 452 Query: 466 KGAIGFIY 473 GA GF+Y Sbjct: 453 VGAAGFVY 460 >gi|167648152|ref|YP_001685815.1| type II and III secretion system protein [Caulobacter sp. K31] gi|167350582|gb|ABZ73317.1| type II and III secretion system protein [Caulobacter sp. K31] Length = 545 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 150/517 (29%), Positives = 246/517 (47%), Gaps = 74/517 (14%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P + P + V+ I G + +++ K I+++PVDV+D+LV++P AD Sbjct: 41 APRIIDTPTLAPPADQVLRIDLTASG-AQSLTLARGKSAIVELPVDVRDMLVTNPAVADA 99 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V+ PR +Y+ G G + + G+++L+L I +++D + L+ TLRR + +NI V+ Sbjct: 100 VLRGPRRIYVLGMGQGVTDAVFFDAAGRKILSLAIRVDQDSSALQDTLRRVLPAANIEVQ 159 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + D+V+L GMV + +S A +++ F+ + V+N+L IAG+DQV LK Sbjct: 160 SIRDSVILTGMVANVGESTMASQIAARFVDK----------PDNVLNMLTIAGKDQVMLK 209 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------------------ 235 V I EV+R+I+KQ+G S G ++ Sbjct: 210 VRIVEVQRNIIKQLGVDSSAVLGQLGETQYAFGLSPSYGINGKLLGGLTGGYKADTTKQP 269 Query: 236 ----------------------GKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIR 270 S G ++ ++ A ER +R Sbjct: 270 TLQVPCNAALPDGAKCLQIVRDNSVYSNGDTATITDTAGSAGLNSAKGMIQAFERVGLVR 329 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 TLAEP LT +SG++ F GG+ +TG ++ YGV L +TP VLS GRI L Sbjct: 330 TLAEPNLTVVSGEAGKFLVGGEFPVPVGQDATGKVTIEFKPYGVGLGYTPIVLSGGRISL 389 Query: 331 RIQTEVSEPVI-------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 ++ TEVSE + +P VR+A+TTVELPSGG++++AGLL+ Sbjct: 390 KLSTEVSELSSLGAFTLTTSTGTSTSSNLTVPGLTVRRAETTVELPSGGSLMIAGLLQQQ 449 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +Q + +P ++ +PILGALFR+ + ETE+ + TP++V P ++L P D Sbjct: 450 TRQNIDALPGMTSLPILGALFRSRDYLNGETELVVIITPYIVDPTKPQNLQTPADGLQTA 509 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 D R+NK+ G+ Y+G +G++ + Sbjct: 510 SDMSTALLGRLNKVVKAP-VGANSGRAYQGPVGYVIE 545 >gi|170703887|ref|ZP_02894570.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] gi|170131202|gb|EDS99846.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] Length = 460 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 43/488 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M + R + + ++A+ +A A +SI K +L Sbjct: 1 MVRMVRWIAFWCLACIVAPGVALAQRAHAADAGAP--------------LSIATGKGEML 46 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + + V+DP+ AD+ V SPRT+++FGK G +I +G + + +L ++++ D Sbjct: 47 SLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQVDT 106 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 A L+ L + V ++++ G V + D+ ++ +L+ Sbjct: 107 ASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTPYLNDK--------- 157 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV- 239 ++++N L ++ QV L+V + EV R++ +Q+G S G++ Sbjct: 158 -ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLGINWSSLGAAGNFIGGLFNGRTLMDPT 216 Query: 240 ------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 S G +SV G R+S + VL AL++ I LAEP LTA+SGQ+ASF +GG Sbjct: 217 TRLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGQTASFLAGG 276 Query: 292 QHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345 + ++TGA +V +GV L FTPTVL+ RI L+++ EVSE + Sbjct: 277 EIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRISLKVRPEVSEVDANNSVTTGG 336 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P VR+ +TTVEL SG + + GLL+ IP L ++PI+G LF + F Sbjct: 337 VTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTANTVSQIPGLGRLPIIGRLFSSKNFQD 396 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 +TE+ + TP++V+P L + D + F R + + Sbjct: 397 NKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSDLEFAVQRNLGLDLMSGETPRP---- 452 Query: 466 KGAIGFIY 473 GA GF+Y Sbjct: 453 VGAAGFVY 460 >gi|115358171|ref|YP_775309.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] gi|115283459|gb|ABI88975.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] Length = 460 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 123/457 (26%), Positives = 209/457 (45%), Gaps = 29/457 (6%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A + + G +SI K +L + + V+DP+ AD+ V SPRT+++FG Sbjct: 18 APGVALAQRAHAVEAGATLSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVFG 77 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 K G +I +G + + +L ++++ D L+ L + V ++++ G V Sbjct: 78 KKAGTTTLIALGANHRPILRKTVIVQVDTVSLQAVLDSRFPQLKLSVSGAPGSLMVSGKV 137 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + D+ ++ +L+ ++++N L ++ QV L+V + EV R++ + Sbjct: 138 PSAADADAVMQSLAPYLNDK----------ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQ 187 Query: 212 QIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDFSVKGVLDRFSFETVLHA 262 Q+G S G++ + R+S + VL A Sbjct: 188 QLGINWSSLGAAGNFIGGLFNGRTLMDPTNRLFNLSPTGAYSVLGGFHTGRWSIDVVLDA 247 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFTP 320 L++ I LAEP LTA+SGQ+ASF +GG+ ++TGA +V +GV L FTP Sbjct: 248 LDQEGLITMLAEPNLTAMSGQTASFLAGGEIPIPVAQAGNTTGAITVEFKPFGVSLDFTP 307 Query: 321 TVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TVL+ RI L+++ EVSE + +P VR+ +TTVEL SG + + GLL+ Sbjct: 308 TVLADNRISLKVRPEVSEVDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQS 367 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 IP L ++PI+G LF + F +TE+ + TP++V+P L + D + Sbjct: 368 QTANTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVAR 427 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F R + + GA GF+Y Sbjct: 428 PSSDLEFAVQRNLGLDLMSGETPRP----VGAAGFVY 460 >gi|150377247|ref|YP_001313842.1| type II and III secretion system protein [Sinorhizobium medicae WSM419] gi|150031794|gb|ABR63909.1| type II and III secretion system protein [Sinorhizobium medicae WSM419] Length = 466 Score = 305 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 214/456 (46%), Gaps = 18/456 (3%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 F +V + + +A + ++ + I + K + ++ ++++ D Sbjct: 9 FAFFCLVLAVFMGIGVGSSASANGDSVEISSNFSRSIRVAKGKTVTIRAVQRFDEIVIGD 68 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P A V + R+ Y+ G +G +V + + + +DI + D L T+R+ + Sbjct: 69 PEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPG 128 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 SN++V + +VL G + +A +++ F ++++N + I Sbjct: 129 SNVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD-----------EEIINSVKITSS 177 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L V E+ RD+ K++G + S + S S F + + G + + Sbjct: 178 QQVQLNVRFVEINRDVGKELGTRISAAYAWSNGSVEFNSRPRATSNTPAGSLIGSLIGEG 237 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +S + + ALE R LAEP L A SG+++SF +GG+ VS G +V+ +G Sbjct: 238 YSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIP-VSEDDGQIAVSYKKFG 296 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIV 369 V L FTPTVLS G I L I+ EVS + +P + VR+A T+V+L SG + + Sbjct: 297 VGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVRNISIPGFSVRRARTSVDLKSGQSFM 356 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLS 428 +AGLL+ + + + +P L ++PILGALF + + R ET++ I TP LVKP+ + ++ Sbjct: 357 IAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPHLVKPMDPLKKVA 416 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 P D +A+ F ++++ Q Sbjct: 417 SPSDRTKRPTEAEFFL-GNIDEVNADDRTRTASTQA 451 >gi|113866744|ref|YP_725233.1| flp pilus assembly protein secretin [Ralstonia eutropha H16] gi|113525520|emb|CAJ91865.1| flp pilus assembly protein secretin [Ralstonia eutropha H16] Length = 618 Score = 305 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 111/441 (25%), Positives = 207/441 (46%), Gaps = 21/441 (4%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 + A I + + + K ++ + V++ + +P + SP+T+Y+ G Sbjct: 76 SGEARGPNCTGAIRSESSVMVPVGKSQLITLQEPVRNRTLGNPNVVQATMVSPQTLYVLG 135 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGM 150 + VG N+I+ G G +++++ D L+ +L + + IRV +D +VL G Sbjct: 136 RAVGTTNMIVQGRSGSC-SIINVVVNADAGGLQTSLGQLLPGEPGIRVMTAADNLVLTGS 194 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V Q +Q+A+E+++ + + + V+N+L++ QV L+V +AEV + +L Sbjct: 195 VTNAQTAQQAMEIAQAYANAAQGGDGNKK--GGVLNMLSVDTPQQVMLEVKVAEVSKTLL 252 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 Q+G ++ G S++ ++ + F+ + A + + ++ Sbjct: 253 NQLGSTVNL----QGGFGSWSGGLVTSLLTGASSAIFASKANNRPFDIAIDAQKNDSLVK 308 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYK----TVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LAEP L ISGQ ASF +GG+ V + G ++ ++GV L FTPTVL+ G Sbjct: 309 ILAEPNLVTISGQEASFLAGGKIYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANG 368 Query: 327 RIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 RI L++ EVSE +P R+A TTV++ G + + GLL D Sbjct: 369 RIHLKVSPEVSELSPTGATIRGGTLAGQSILPVITTRRASTTVQMRDGESFAIGGLLTDS 428 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + + +P ++P+LG LFR++++ ++ TE+ TP LVKP+ + P D +S Sbjct: 429 ARGSLKALPGAGEVPVLGTLFRSTQYQQDLTELVFVITPRLVKPMQTSNYPLPTDSFSTP 488 Query: 438 DDAKAFFFNRVNKIYGPKEAS 458 + +F + + Sbjct: 489 NPLSLYFMGNMEGSGKRQPQP 509 >gi|302343419|ref|YP_003807948.1| type II and III secretion system protein [Desulfarculus baarsii DSM 2075] gi|301640032|gb|ADK85354.1| type II and III secretion system protein [Desulfarculus baarsii DSM 2075] Length = 466 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 113/485 (23%), Positives = 192/485 (39%), Gaps = 43/485 (8%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 M + + A+A + ++ + ++ +P ++ V Sbjct: 1 MSGFCRLAVAALIVAFAVATPASAR-------AEARTGRLEVAAGHSRLVDLPAPLKRVS 53 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V+D T ADV+V +PR +Y+ G+ G N+ + + + + + RD L+ R Sbjct: 54 VADETVADVLVINPRQIYVNGRKPGNTNITVWDRAERVIAAYAVGVGRDYTRLKAAFARV 113 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + I V + +VL G V + ++A ++ F ++V NLL + Sbjct: 114 LPGEAIEVHELEGALVLAGSVSSESAREKAESIARLF------------EKERVSNLLEV 161 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--GPSKSFAADFGGKF---------- 238 + QV LK+ AEV R K++ + +F + G Sbjct: 162 VDQKQVLLKLRFAEVNRQAAKRMNVNLGYWDPARPGNIFFTFLDNMTGPPSIDYSKGSIE 221 Query: 239 --VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +S + L L++ + LAEP L +SG+ A+F +GG+ Sbjct: 222 FDLSANVGAWGGLNDSGRQYMAFLDILKQNGLAKILAEPNLVCVSGKKANFLAGGEFPIP 281 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYR 352 T++ YGV L F P VL G+I L ++ EVSE + +P Sbjct: 282 VP--GRDYTAIVFKKYGVQLTFLPKVLPNGKISLEVEPEVSELDYSPGVVTDGFVVPGLT 339 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+A T +EL G +AGLLK D+ + P L +PILGALFR+S++ ETE+ I Sbjct: 340 TRRASTQLELGDGQGFAIAGLLKQDVTRSVSKWPFLGDLPILGALFRSSQYRNRETELLI 399 Query: 413 AATPFLVKPVAMRDLSRPDDH-YSVEDDAKAFFFNRV---NKIYGPKEASEVEGQNYKGA 468 TP +V+P + DD + + + ++ G A +G Sbjct: 400 VVTPHIVRPGDKTPDPLIGPRDFDDPDDMDFYLWGKTGGDDEPPGRAGAKAERSMEMEGR 459 Query: 469 IGFIY 473 G Sbjct: 460 FGHEV 464 >gi|84386797|ref|ZP_00989822.1| type II and III secretion system protein [Vibrio splendidus 12B01] gi|84378325|gb|EAP95183.1| type II and III secretion system protein [Vibrio splendidus 12B01] Length = 465 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 109/460 (23%), Positives = 196/460 (42%), Gaps = 45/460 (9%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + +N+ ++++P + + +S+ A+ + + +FGK G A + ++ Sbjct: 21 ASTASTFDVTINEARMIRLPEKAKSIFISNTHIANYQTLTNTKVMIFGKQAGSATITVLN 80 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + I + + ++ ++++ E + + L G V + + V L Sbjct: 81 EQERVIYTNKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSL 140 Query: 164 SETFLSQSGRNQYANS-----------------------SSKKVMNLLNIAGEDQVTLKV 200 ++ +LS + + +++N L + +QV ++V Sbjct: 141 AKGYLSPIVGSTEQQESSNSQGNSNNSSSSTNQNQQTQLNDDELINQLVVTMPNQVNIRV 200 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 IAEV R++ ++G + G + S ++ Sbjct: 201 KIAEVSRNVSNKLGIKWGSIAGGVGQFSF-------------SKLPNVSSWGKPSITALI 247 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 AL + LAEP LTA+SG+ A F GGQ +++ T T + D+GV L+FTP Sbjct: 248 DALATNGMMSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTP 305 Query: 321 TVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TVLS RI L++ EVS I +N + PS+ R A TT+EL SG + L GLLK Sbjct: 306 TVLSQNRISLKVNPEVSNISIESQQVINGTNFPSFTTRSASTTIELASGQSFALGGLLKS 365 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + + + +PL+ +IP+LG+LFR++ F R ETE+ I T +LV+P + P D Sbjct: 366 EDIEQLQKVPLIGEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMPLPTDGLIP 425 Query: 437 EDDAKAFF---FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 D + + ++ + G GF Y Sbjct: 426 LSDVERLLAWPREQQKTSNNKATYTDNQKPRLLGDNGFYY 465 >gi|110632971|ref|YP_673179.1| type II and III secretion system protein [Mesorhizobium sp. BNC1] gi|110283955|gb|ABG62014.1| type II and III secretion system protein [Chelativorans sp. BNC1] Length = 464 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 127/470 (27%), Positives = 218/470 (46%), Gaps = 25/470 (5%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 + L R F + ++ F ++A + V + K I + K + ++ Sbjct: 10 KRLTRYVFAVCALAFFG-------CAFGTMDSSANGDSIQVSVAKDSAIRVARGKPLTVE 62 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 + ++++ DP A + + + Y+ G+ +G + L + + D+ + D Sbjct: 63 IAEAFDEIVIGDPEIATINPLTDHSFYVLGQGLGTTGIALYDESKRLIGTFDVEVTLDTK 122 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L T+R+ + SNI+V + +VL G +++A +++ F Sbjct: 123 MLAGTIRQSVPGSNIKVTSANGRIVLSGSAPDAVAAEKASQIAARFAGD----------- 171 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V+N ++I QV L V E+ R + K++G + S +SG SF +D + Sbjct: 172 EDVINTIDITSSQQVQLNVRFVEINRAVGKELGTKISAAYVTSGGGISFNSDPRASSNTP 231 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 GD V D FS + + ALE R LAEP L A SG++ASF +GG+ VS Sbjct: 232 AGDLIGGLVSDGFSIDVAIEALEDRGVARRLAEPNLIARSGETASFLAGGEFPIP-VSEE 290 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKAD 357 GA +V+ +GV L+FTPTVLS G I L I+ EVS V +P + VR+A Sbjct: 291 NGAVTVSYKKFGVGLNFTPTVLSDGLIALDIEPEVSSIDTTSSYRVGNIAIPGFTVRRAR 350 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T+++L SG + ++AGLL+ + + +P L ++P+LGALF + + R ET++ I TP Sbjct: 351 TSIDLRSGQSFMMAGLLQSQNEINTQRVPGLGQLPVLGALFSSKAYQRRETDLVIIVTPH 410 Query: 418 LVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 LV P+ ++ P D D + F V ++ + + Sbjct: 411 LVSPIPPGNKVATPADRTKPARDGEVFL-GNVEEVRLQQRTAANAPSAGH 459 >gi|307300715|ref|ZP_07580490.1| type II and III secretion system protein [Sinorhizobium meliloti BL225C] gi|306904249|gb|EFN34834.1| type II and III secretion system protein [Sinorhizobium meliloti BL225C] Length = 466 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 118/461 (25%), Positives = 211/461 (45%), Gaps = 18/461 (3%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 F ++ + +A + ++ + I + K + ++ ++++ D Sbjct: 9 FAFFCFVVALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIRAVQRFDEIVIGD 68 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P A V + R+ Y+ G +G +V + + + +DI + D L T+R+ + Sbjct: 69 PEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPG 128 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 S+++V + +VL G + +A +++ F ++V+N + I Sbjct: 129 SSVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD-----------EEVINSIKITSS 177 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L V E+ RD+ K++G Q S + S S F + + G + + Sbjct: 178 QQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTPAGSLIGSLIGEG 237 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +S + + ALE R LAEP L A SG+++SF +GG+ G +V+ +G Sbjct: 238 YSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIPISEQ-DGTITVSYKKFG 296 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369 V L FTPTVLS G I L I+ EVS V +P + VR+A T+V+L SG + + Sbjct: 297 VGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRARTSVDLKSGQSFM 356 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLS 428 +AGLL+ + + + +P L ++PILGALF + + R ET++ I TP LVKP+ + ++ Sbjct: 357 IAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPHLVKPIDPLKKVA 416 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 P D +A+ F ++++ Q Sbjct: 417 SPSDRTKRPTEAEFFL-GNIDEVEVNGRGRSASRQARVARA 456 >gi|193782542|ref|NP_435332.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021] gi|307319126|ref|ZP_07598556.1| type II and III secretion system protein [Sinorhizobium meliloti AK83] gi|193072997|gb|AAK64744.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021] gi|306895233|gb|EFN25989.1| type II and III secretion system protein [Sinorhizobium meliloti AK83] Length = 466 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 118/456 (25%), Positives = 211/456 (46%), Gaps = 18/456 (3%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 F ++ + +A + ++ + I + K + ++ ++++ D Sbjct: 9 FAFFCFVVALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIRAVQRFDEIVIGD 68 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P A V + R+ Y+ G +G +V + + + +DI + D L T+R+ + Sbjct: 69 PEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPG 128 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 S+++V + +VL G + +A +++ F ++V+N + I Sbjct: 129 SSVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD-----------EEVINSIKITSS 177 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L V E+ RD+ K++G Q S + S S F + + G + + Sbjct: 178 QQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTPAGSLIGSLIGEG 237 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +S + + ALE R LAEP L A SG+++SF +GG+ G +V+ +G Sbjct: 238 YSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIPISEQ-DGTITVSYKKFG 296 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369 V L FTPTVLS G I L I+ EVS V +P + VR+A T+V+L SG + + Sbjct: 297 VGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRARTSVDLKSGQSFM 356 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLS 428 +AGLL+ + + + +P L ++PILGALF + + R ET++ I TP LVKP+ + ++ Sbjct: 357 IAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPHLVKPIDPLKKVA 416 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 P D +A+ F ++++ Q Sbjct: 417 SPSDRTKRPTEAEFFL-GNIDEVEVNGRGRSASRQA 451 >gi|172065273|ref|YP_001815985.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] gi|171997515|gb|ACB68432.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] Length = 656 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 121/434 (27%), Positives = 213/434 (49%), Gaps = 19/434 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 92 GAVRDATSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 151 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +L++ + +I V + T+VL G V Q +Q+A Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQA 210 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V+++ + S S + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 211 VQIAHAY-SDSAGDGGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQ 269 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S + ++ S G + + F A ++ LAEP L I Sbjct: 270 GGFGSWSGALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTI 325 Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SGQ A+F +GG+ SS T ++ ++GV L FTPTVL+ GRI L++ EVS Sbjct: 326 SGQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385 Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E +P R+A TTV++ G + + GL+KD+ + IP + Sbjct: 386 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGV 445 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D +S ++ + + Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFSKPNEVDVYATGNM 505 Query: 449 NKIYGPKEASEVEG 462 G ++A+ Sbjct: 506 EGRKGVRKATMQPS 519 >gi|16520026|ref|NP_444146.1| outermembrane protein RhcC2; component of type III secretion apparatus [Sinorhizobium fredii NGR234] gi|2495099|sp|P55702|Y4XJ_RHISN RecName: Full=Uncharacterized protein y4xJ gi|2182718|gb|AAB91933.1| outermembrane protein RhcC2; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 423 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 136/446 (30%), Positives = 205/446 (45%), Gaps = 30/446 (6%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 + + I +S L K + +P + V+DPT AD S RT+++FGK G Sbjct: 1 MPRAAPNSINATLNLSSSLGK--TVHLPAPAATIFVADPTIADYQAPSNRTIFVFGKKFG 58 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 + ++ + +G+ + L +++ + IA L LR + D I V +L G + Sbjct: 59 RTSLFALDENGEALAELHVVVTQPIADLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAE 118 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 A ++E FL ++N + +AG QV L V +AEV R LK +G Sbjct: 119 VVDIAKRVTEQFLGDGA----------PIVNNIKVAGSLQVNLSVRVAEVSRSGLKALGI 168 Query: 216 QHSITGSSSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 S G G GG + D S VL AL + LA Sbjct: 169 NLSAFGQFGNFKVGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLA 228 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 EP LTA+SG++ASF +GG+ V G TSV +GV L F PTVL I + ++ Sbjct: 229 EPNLTAMSGETASFLAGGEFPIP-VLQENGQTSVEFRRFGVSLEFVPTVLDNNLINIHVK 287 Query: 334 TEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EVSE + VN +P+ R+ADT VEL SG + V+ GL++ ++ P L Sbjct: 288 PEVSELSLQGAVQVNGIAVPAVSTRRADTVVELASGQSFVIGGLIRRNVNNDISAFPWLG 347 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRV 448 +IPILGALFR+S F +EE+E+ I TP++V+P +S P D + + Sbjct: 348 RIPILGALFRSSSFQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAPA----------L 397 Query: 449 NKIYGPKEASEVEGQNYKGAIGFIYK 474 + A + + KG +GFI + Sbjct: 398 GTPPRARAAISTDAPSVKGDLGFIIE 423 >gi|187927687|ref|YP_001898174.1| type II and III secretion system protein [Ralstonia pickettii 12J] gi|187724577|gb|ACD25742.1| type II and III secretion system protein [Ralstonia pickettii 12J] Length = 663 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 118/478 (24%), Positives = 216/478 (45%), Gaps = 35/478 (7%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 R + S NP++A P + + + + K ++ +P Sbjct: 65 SRAGASAPVQMTISMNPALATAPVA----DVRGPNCTGAVRGESSVVVPVGKSSLISLPE 120 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 V++ + +P + SP++MYL G++VG N+I+ G G + ++ D L+ Sbjct: 121 PVRNRTLGNPAVVQATMVSPQSMYLLGRSVGTTNMIVQGRSGACSIVNVVVNA-DAGGLQ 179 Query: 125 MTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------------ 171 +L + + N IRV +D++VL G V + Q +Q+A+E++ + + + Sbjct: 180 TSLAQLMPGENKIRVMTAADSLVLAGNVSSAQAAQQAMEIAHAYAASAQSGADKGGGAAG 239 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + V+N++ + QV L+V +AEV + +L Q+G ++ G S++ Sbjct: 240 ALGGGGAAGGANVINMMIVDTPQQVMLEVKVAEVSKTLLNQLGSALNV----QGGFGSWS 295 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 ++ + F+ L A + + ++ LAEP L +SGQ ASF +GG Sbjct: 296 GGLLTSLLTGSSTGFFANKANNRPFQVELDAQKNDSLVKILAEPNLVTLSGQEASFLAGG 355 Query: 292 QHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 + SS+ ++ +YGV L FTPTV++ GRI L++ EVSE Sbjct: 356 KIYIPVAQSSSSGGAPTITLQEEEYGVGLKFTPTVMANGRINLKVAPEVSELSPTGATVT 415 Query: 348 ---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 +P R+A TTV++ G + + GLL+D+ + + +P +IP+LG LF Sbjct: 416 GANTNGQTILPLITTRRASTTVQMRDGESFAIGGLLQDNARGSLKALPGAGEIPVLGTLF 475 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 R+++F + TE+ I TP LV+P+ P D +S ++ + + Sbjct: 476 RSTQFQHDLTELVIVITPRLVQPMQTASYPLPTDSFSTPNELAVYLTGNMEGSGAKNR 533 >gi|149912019|ref|ZP_01900613.1| putative membrane protein [Moritella sp. PE36] gi|149804918|gb|EDM64952.1| putative membrane protein [Moritella sp. PE36] Length = 473 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 120/459 (26%), Positives = 200/459 (43%), Gaps = 42/459 (9%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + + LNK ++++P + + ++ + AD + + +FGK G ++ ++ Sbjct: 25 AQTLDVVLNKARLIELPKTAKSIFIASSSIADYQTLTNTKIMVFGKKTGSTSLYVLDAKE 84 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + + + ++ L + + D+ E + + L G V T +++ V LSE Sbjct: 85 NVIYSATVKVSHNVTELNELIHKEFPDAIFNAESTAGKLFLKGQVPTPSMAEKIVRLSEG 144 Query: 167 FLS--------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 ++S Q + +N + +++N L + +QV L++ IAEV Sbjct: 145 YVSTLASTESSDSQQSGNAQSSTQPTQPAASNVDNDELINQLQVTMPNQVNLRIRIAEVS 204 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 R + ++G + G F + GG ++ AL Sbjct: 205 RKVSNKLGIKWGSQG--------FGTGTFAFLDNYGGKLGGVNPASWADLSVIVDALATN 256 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP LTA+SG+ ASF GG+ V S T V +GV L F PTVLS Sbjct: 257 GMMSVLAEPNLTAMSGEEASFLVGGEIPIPLVYSDTAT--VEYKTFGVRLDFKPTVLSAN 314 Query: 327 RIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 RI L++ TEVS N + P++ R+A TT+EL SG + L GLL+ Sbjct: 315 RISLKVATEVSTVSSETNVQIGGTQGSSSFPTFVTRRASTTIELASGQSFALGGLLQSKD 374 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 + + +PLL IP+LGALFR++ F REETE+ I AT +LV+P L P D Sbjct: 375 IEQLQKMPLLGDIPVLGALFRSNEFQREETELIIIATAYLVQPTRADILPLPTDGLIPMS 434 Query: 439 DAKAFF----FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 D + + + ++ G GF Y Sbjct: 435 DVERLLAWPVSKQATNATDNESRTDNRQPRLLGDNGFYY 473 >gi|197106459|ref|YP_002131836.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1] gi|196479879|gb|ACG79407.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1] Length = 484 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 110/430 (25%), Positives = 202/430 (46%), Gaps = 20/430 (4%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 F++ + + A + + + V G ++++ K ++++ V ++DP Sbjct: 4 FAAIAAALSVGAGTLAPQSALAAAAVVAGPSSELAVEAGKGRLIRLDRPAATVFIADPKI 63 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 ADV V SP +Y+ GK G ++ + + + +L + + D A L+ L+R +S I Sbjct: 64 ADVQVKSPTLVYVLGKAPGATSLFALDAGERMIADLAVNVGIDTARLDQALKRHAPNSQI 123 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 +VE V ++L G + + + ++ F+ + + +++N + + +Q+ Sbjct: 124 QVESVDGALILSGKAGSAAEGADILRIAAEFVP-----GEGEARAGRLINRIVVEQPNQI 178 Query: 197 TLKVTIAEVRRDILKQIGFQHSITG----------SSSGPSKSFAADFGGKFVSEGGDFS 246 L V +AEV + + +G G + + A+ ++ Sbjct: 179 NLHVRVAEVSKQAREVLGVNWDAMGLLGEGMVGLATGRQIFTNPASRETFSRLNGTDTIV 238 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 ++ AL++ ++ LAEP LTA+SG+ ASF +GG++ + Sbjct: 239 GSYQDGDLDLNVLVDALKQKGLVKVLAEPNLTAVSGEPASFLAGGEYPIPVPQRGEDLIT 298 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVEL 362 + +GV L F TVL GRI L ++ EVS+ I V +P+ R+A+TTVEL Sbjct: 299 IDYKQFGVSLSFVATVLDGGRISLNVRPEVSQLSEAGAITVQGLTVPALTTRRAETTVEL 358 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 SG + +AGLL++ + +P L IP+LG LFR+ F + E+E+ I TP+LVKP Sbjct: 359 GSGQSFAIAGLLQNTSNETLRKLPGLGDIPVLGNLFRSKEFQKNESELVIIVTPYLVKPA 418 Query: 423 AMRDLSRPDD 432 + L+ P D Sbjct: 419 SRT-LATPAD 427 >gi|77919345|ref|YP_357160.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380] gi|77545428|gb|ABA88990.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380] Length = 507 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 119/501 (23%), Positives = 204/501 (40%), Gaps = 49/501 (9%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M + + + LF + + + + + ++ Sbjct: 1 MTTRRAILPAICFLGLFCLALFTGTAAA--------------DDIEHLTLDVNIGGSELV 46 Query: 61 QVPVDVQD--VLVSDPTKADVVVHSPR--TMYLFGKNVGQANVILIGHDGKQM-LNLDIL 115 ++ Q +L+S+ P +Y GK +G + V + +Q+ +D+ Sbjct: 47 EIREPSQRMKILISNGDIIGARPLRPNLINVYNLGKKIGFSRVTVWDDAARQVRAIIDVS 106 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + D+ L+ + NI+V VVL G V + + ++ + L+ETFL + Sbjct: 107 VNLDLTPLKQKIGELYPHENIKVYASETGVVLSGTVSSPEVVEQVIRLTETFLPKKAEAS 166 Query: 176 YANSSSKK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227 + + K + NLL++ G QV L+V AEV R + G Sbjct: 167 TSGKGTGKSGSGITNLLSVGGVQQVMLEVKFAEVTRSSGRDWQAALGFNGLGDNSGLVAG 226 Query: 228 ----------KSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 F G ++ + F + L LE R LAEP Sbjct: 227 VGGISGDISGGDFTGKLGSVLLNFADFASNPANIFVQMGDFTSALRFLEDEGLARILAEP 286 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L +SGQ ASF +GG+ ++ ++GV L FTP V+S G+I LR+ Sbjct: 287 RLVTMSGQEASFLAGGEFPIPVPDEDG--ITIEFREFGVSLRFTPVVMSDGKISLRVAPS 344 Query: 336 VSEPVIG--------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 VS+ ++P+ RK +TTV+L G T+ LAGLL+D +++ IP Sbjct: 345 VSDIASTSSIPSSITGTTYNVPNLTTRKLETTVQLYDGQTLALAGLLQDTLRESVSKIPG 404 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L +PILGALFR++ + +E+T++ IA TP LVKP LS P ++ + + + R Sbjct: 405 LGDLPILGALFRSTSYTQEKTDLLIAVTPHLVKPSKEGTLSFPGEYMRPPNRLEFYLEGR 464 Query: 448 VNKIYGPKEASEVEGQNYKGA 468 + P + S + ++ Sbjct: 465 LEGRRFPNDPSALSQHSFAAP 485 >gi|73542329|ref|YP_296849.1| type II and III secretion system protein:transport-associated [Ralstonia eutropha JMP134] gi|72119742|gb|AAZ62005.1| type II and III secretion system protein:Transport-associated [Ralstonia eutropha JMP134] Length = 633 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 110/454 (24%), Positives = 206/454 (45%), Gaps = 23/454 (5%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGK---KISIGLNKVIILQVPVDVQDVLV 71 S P+ G + + + + K ++ + V++ + Sbjct: 56 MTISMAPAGTAPVGAAAPVPVADARGPNCTGAVRQESSVIVPVGKSQLITLQEPVKNRTL 115 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 +P + S +T+Y+ G+ VG N+I+ G G +++++ D L+ +L + + Sbjct: 116 GNPNVVQATMVSAQTLYVLGRTVGTTNMIVQGRSGSC-SIINVVVNADAGGLQTSLSQLL 174 Query: 132 ADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS-GRNQYANSSSKKVMNLLN 189 IRV +D +VL G V Q + +A+++++ + + + V+N+L+ Sbjct: 175 PGEPGIRVMTAADNLVLTGSVTNAQSALQAMDIAQAYANAAQVGAGGDAGKKGGVLNMLS 234 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + QV L+V +AEV + +L Q+G ++ G S+ ++ Sbjct: 235 VDTPQQVMLEVKVAEVSKTLLNQLGSSVNL----QGGFGSWTGGLVTSLLTGASGAIFGS 290 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----TVSSSTGAT 305 + F + A + + ++ LAEP L ISGQ ASF +GG+ V + G Sbjct: 291 KANNKPFNFAIDAQKNDSLVKILAEPNLVTISGQEASFLAGGKIYIPVAQANVLNGAGTV 350 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKA 356 ++ ++GV L FTPTVL+ GRI L++ EVSE +P R+A Sbjct: 351 TLQEEEFGVGLKFTPTVLANGRIHLKVAPEVSELSPTGATVSGGTLAGQSVLPLITTRRA 410 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 TTV++ G + + GLL+D + + +P ++P+LG LFR++++ ++ TE+ TP Sbjct: 411 STTVQMRDGESFAIGGLLQDSARGSLKALPGAGEVPVLGTLFRSTQYQQDLTELVFIITP 470 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 LVKP+A + P D ++ D +F + Sbjct: 471 RLVKPMATNNYPLPTDSFTTPDPFSLYFMGNMEG 504 >gi|254255254|ref|ZP_04948570.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa AUO158] gi|124900991|gb|EAY71741.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa AUO158] Length = 682 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 120/421 (28%), Positives = 215/421 (51%), Gaps = 19/421 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 92 GAVRDSTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGMSVGTTNMIV 151 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D A L+ +L + + + ++ V + T+VL G V + Q +Q+A Sbjct: 152 QGKSGACR-VIDVAVGADAAGLQASLMQLMPNERDVHVSTAAGTIVLSGSVSSSQAAQQA 210 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V ++ + S + V+N+L++ QV L+V +AEV + ++ Q+G +I Sbjct: 211 VAIARAY-GDSAGDGNGGGKPGSVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQ 269 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S + ++ S V + F + A ++ LAEP L I Sbjct: 270 GGFGSWSGALVSNLLAGVASGA----VFNKANNRPFSVAVDAQNTDNLVKILAEPNLVTI 325 Query: 281 SGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SGQ A+F +GG+ + ++ + T ++ ++GV L FTPTVL+ GRI L++ EVS Sbjct: 326 SGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385 Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E A +P R+A TTV++ G T + GL+KD+ + IP + Sbjct: 386 ELSQTGVTLSATNVSGASILPLITTRRASTTVQMSDGETFAIGGLIKDNASGALKAIPGV 445 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++P+LGALFR++ F ++ TE+ TP LVKP++ D++ P D +S ++A + + Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFVITPHLVKPLSTADVALPTDSFSKPNEADVYATGYM 505 Query: 449 N 449 Sbjct: 506 E 506 >gi|114799407|ref|YP_759869.1| type II/III secretion system protein [Hyphomonas neptunium ATCC 15444] gi|114739581|gb|ABI77706.1| type II/III secretion system protein [Hyphomonas neptunium ATCC 15444] Length = 432 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 36/452 (7%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M ++R L + P++A A A ++ + K ++ Sbjct: 1 MSGIRRILIASCLAAL-CAQPALAWTQRSAPAGA-------------DQLELRRGKSAVV 46 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + ++V+DP A+ + S R+ ++ GK G V++ G +++ ++ + Sbjct: 47 EADAAFATIVVADPEIAEAMPTSNRSFFVRGKKPGGTTVLIYDEAGAIAELIEVEVKLGL 106 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L L R + I V V D V L G V T + A++L+E + Sbjct: 107 DELRGDLGRLLPGEIIDVYAVHDGVYLDGKVTTAAAADMALQLAERHV------------ 154 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 V N L++ QV L+V E R +++IGF ++I + G + Sbjct: 155 PGGVANGLSVGQSQQVMLEVRFLEASRKAVREIGFGNTIDANDVVAGTEGGTVSGLLEKT 214 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +V + + + L ALE IRTLAEP L A+SG +ASF +GG+ S Sbjct: 215 ----LAVFTNVGGENIDVSLRALEEKGVIRTLAEPNLVALSGDTASFLAGGEFPIPVSSR 270 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKA 356 T V +GV L FTPTVL G + LR++ EVS G + D+P VR+A Sbjct: 271 DNEVT-VEFKKFGVSLDFTPTVLGDGLVNLRVRPEVSALDRGNGIRASNIDIPGVSVRRA 329 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DTTVEL G +AGLL+++ P L +PILG+LF + R+ R ETE+ I TP Sbjct: 330 DTTVELHDGQAFAIAGLLQNNYTNDVRQTPWLGNVPILGSLFSSKRYQRNETELVIIVTP 389 Query: 417 FLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNR 447 LV+P + + P D S +A+ F + Sbjct: 390 RLVQPFSHPEAIVSPLDSVSEPTEAELFLLGK 421 >gi|167841781|ref|ZP_02468465.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 433 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 125/446 (28%), Positives = 210/446 (47%), Gaps = 27/446 (6%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 +++ ++++P V V+DP ADV V +P+ +++ GK G + Sbjct: 2 ARAAEPAPVLAVPAGGGEMVKLPEPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLF 61 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 +G + + +L ++++ D L+ L ++ + ++++ G V + D+ Sbjct: 62 ALGANNRTILRETVVVDVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAV 121 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + +L Q + ++N L +A QV L+V I EV R+I +Q+G S Sbjct: 122 AQTLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSAL 171 Query: 221 GSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRT 271 G+S +S G FSV G R+S + VL AL++ I Sbjct: 172 GASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVLGGFHTSRYSIDGVLDALDQEGLITM 231 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+ Sbjct: 232 LAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLK 291 Query: 332 IQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ + +P Sbjct: 292 VRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPG 351 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L+++P+LG LF + + ++TE+ + TP++V+P +L D + F R Sbjct: 352 LARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELHDALDDVTRPSSDIEFVLQR 411 Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIY 473 I + G GF+Y Sbjct: 412 SLGIDPLGG----DAPRLAGPAGFVY 433 >gi|194288836|ref|YP_002004743.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG 19424] gi|193222671|emb|CAQ68674.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG 19424] Length = 621 Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 111/429 (25%), Positives = 206/429 (48%), Gaps = 21/429 (4%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 I + + + K ++ + V++ + +P+ + SP+T+Y+ G+ VG N+I Sbjct: 84 TGAIRSESSVVVPVGKSQLITLQEPVRNRTLGNPSVVQATMVSPQTLYVLGRTVGTTNMI 143 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQR 159 + G G +++++ D L+ +L + + IRV +D +VL G V Q +Q+ Sbjct: 144 VQGRSGSC-SIINVVVNADSGGLQTSLGQLLPGEPGIRVTTAADNLVLTGSVTNAQAAQQ 202 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A+E+++ + + + S V+N++++ QV L+V +AEV + +L Q+G ++ Sbjct: 203 AMEIAQAYANAAQGGDGNKKGS--VLNMMSVDTPQQVMLEVKVAEVSKTLLNQLGSAVNL 260 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S++ ++ + FE L A + + ++ LAEP L Sbjct: 261 ----QGGFGSWSGGLVTSLLTGASAAVFGSKANNRPFEFALDAQKNDSLVKILAEPNLVT 316 Query: 280 ISGQSASFTSGGQHLYK----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ ASF +GG+ V + G ++ ++GV L FTPTVL+ GRI L++ E Sbjct: 317 ISGQEASFLAGGKIYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANGRIHLKVAPE 376 Query: 336 VSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE +P R+A TTV++ G + + GLL D + + +P Sbjct: 377 VSELSPTGATIRGGTLAGQTILPVITTRRASTTVQMRDGESFAIGGLLTDSARGSLKALP 436 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 ++P+LG LFR++++ ++ +E+ TP LVKP+ + P D +S + +F Sbjct: 437 GAGEVPVLGTLFRSTQYQQDLSELVFIITPRLVKPMQTNNYPLPTDSFSAPNPLSLYFMG 496 Query: 447 RVNKIYGPK 455 + Sbjct: 497 NMEGDGKRP 505 >gi|167719684|ref|ZP_02402920.1| type II/III secretion system protein [Burkholderia pseudomallei DM98] gi|167902788|ref|ZP_02489993.1| type II/III secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 448 Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 129/458 (28%), Positives = 213/458 (46%), Gaps = 27/458 (5%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 AV G +++ ++++P V V+DP ADV V +P+ ++ Sbjct: 5 ALALGMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVF 64 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 + GK G + +G + + +L ++++ D L+ L + + ++++ Sbjct: 65 VLGKKAGTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVS 124 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G V + D+ V+ + +L Q + ++N L +A QV L+V I EV R+ Sbjct: 125 GRVPSAADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRN 174 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETV 259 I +Q+G S G+S +S G FSV G R+S + V Sbjct: 175 ITQQLGINWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGV 234 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FT Sbjct: 235 LDALDQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFT 294 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLK 375 PTVL+ RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ Sbjct: 295 PTVLADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQ 354 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 + +P L+++P+LG LF + + ++TE+ + TP++V+P +L D + Sbjct: 355 SKSSDVLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVT 414 Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F R I + G GF+Y Sbjct: 415 RPSSDIEFVLQRSLGIDPLGG----DAPRLAGPAGFVY 448 >gi|171320618|ref|ZP_02909638.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] gi|171094131|gb|EDT39218.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] Length = 460 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 131/457 (28%), Positives = 214/457 (46%), Gaps = 29/457 (6%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A + G +SI K +L + + V+DP+ AD+ V SPRT+++FG Sbjct: 18 APGVALAQRAHAADAGAALSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVFG 77 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 K G +I +G + + +L ++++ D A L+ L + V ++++ G V Sbjct: 78 KKAGTTTLIALGANHRPILRRTVIVQVDTASLQTVLDSRFPQLKLSVSGAPGSLMVSGKV 137 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + D+ ++ +L+ +K++N L ++ QV L+V + EV R++ + Sbjct: 138 PSAADADAVMQSLTPYLNDK----------EKIVNRLTLSRPIQVNLRVRVTEVSRNVTQ 187 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFV-------SEGGDFSVKGVL--DRFSFETVLHA 262 Q+G S G++ S G +SV G R+S + VL A Sbjct: 188 QLGINWSSLGAAGNFIGGLFNGRTLMDPTTKLFNLSPTGAYSVLGGFHAGRWSIDVVLDA 247 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFTP 320 L++ I LAEP LTA+SGQ+ASF +GG+ S+TGA +V +GV L FTP Sbjct: 248 LDQEGLITMLAEPNLTAMSGQTASFLAGGEIPIPVAQAGSTTGAITVEFKPFGVSLDFTP 307 Query: 321 TVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TVL+ RI L+++ EVSE + +P VR+ +TTVEL SG + + GLL+ Sbjct: 308 TVLADNRISLKVRPEVSEVDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQS 367 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 IP L ++PI+G LF + F +TE+ + TP++V+P L + D + Sbjct: 368 QTADTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVAR 427 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F R + + GA GF+Y Sbjct: 428 PSSDLEFAVQRNLGLDLLSGET----PRLVGAAGFVY 460 >gi|207744158|ref|YP_002260550.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum IPO1609] gi|206595562|emb|CAQ62489.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum IPO1609] Length = 626 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 117/463 (25%), Positives = 215/463 (46%), Gaps = 42/463 (9%) Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83 A +AA + + ++++ + K ++Q+P V++ V +P ++ S Sbjct: 74 AATAEASRESAAKGPNCTGAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVS 133 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142 P+T+YL G+ VG N+I+ G G +D+ + D L+ TLR + + N++V + Sbjct: 134 PQTLYLLGQEVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQSTLRTLMPGAKNVQVSAAA 192 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYANSS 180 D++VL G V +Q+ ++++ F+ G A Sbjct: 193 DSLVLGGSVSDSVQAQKVLDIANAFVMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPR 252 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 S +++N++ + QV L+V +AEV + ++ Q+G ++ +G S+ F+S Sbjct: 253 SPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNV----NGAFGSWTFGALANFLS 308 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 D + + L A + ++ LAEP+L AISGQ ASF +GG+ Sbjct: 309 GSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVSQG 368 Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGD 347 + + +GV L FTPTV+ GRI L++ EVSE N Sbjct: 369 AATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSI 428 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P R+A TT+++ G + + GL+K+++ + IP + ++P++GAL R++ F +++ Sbjct: 429 LPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQ 488 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 TE+ TP LVKP+ P D + + A+ F + Sbjct: 489 TELVFVVTPHLVKPL-PAQYPLPTDSFGRANPAEIFLNGNMEG 530 >gi|167581961|ref|ZP_02374835.1| type II/III secretion system protein [Burkholderia thailandensis TXDOH] Length = 441 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 128/454 (28%), Positives = 212/454 (46%), Gaps = 27/454 (5%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 AAV +++ ++++P V V+DP ADV V +P+ +++ GK Sbjct: 2 GAAVEPRLARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGK 61 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G + +G + + +L +++ D L+ L ++ + ++++ G V Sbjct: 62 KAGTTTLFALGANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVP 121 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + D+ V+ + +L Q + ++N L +A QV L+V I EV R+I +Q Sbjct: 122 SAADADAVVQTLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQ 171 Query: 213 IGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHAL 263 +G S G+S +S G FSV G +S + VL AL Sbjct: 172 LGINWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDAL 231 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 ++ I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL Sbjct: 232 DQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVL 291 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 + RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ Sbjct: 292 ADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSS 351 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 + +P L+++P+LG LF + + ++TE+ + TP++V+P +L D + Sbjct: 352 DVLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSS 411 Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F R I + G GF+Y Sbjct: 412 DIEFVLQRSLGIDPLGG----DAPRLTGPAGFVY 441 >gi|90406750|ref|ZP_01214943.1| RhcC2 protein [Psychromonas sp. CNPT3] gi|90312203|gb|EAS40295.1| RhcC2 protein [Psychromonas sp. CNPT3] Length = 459 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 122/458 (26%), Positives = 200/458 (43%), Gaps = 43/458 (9%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + K +++ L++ +L +P + + ++ AD + + +FGK VG ++ ++ Sbjct: 17 SAQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTKIMIFGKRVGSTSLYVLD 76 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + + + ++ L ++ ++ + E + + L G V T +++ V L Sbjct: 77 ARENVIYSATVKVNHNVQELNALIKHEFPNAQVHSESTAGKLFLKGQVSTPSIAEKIVRL 136 Query: 164 SETFLSQSGRNQYANSSS---------------------KKVMNLLNIAGEDQVTLKVTI 202 +E ++S +G + ++ ++++N L I QV L+V I Sbjct: 137 AEGYVSSNGGKSESAGAATEGGAQDDQQGGESAQSTQNTQELINQLVITMPTQVNLRVRI 196 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 AEV R++ ++G + G G + + ++ A Sbjct: 197 AEVSRNVSNKLGIKWGAQN-------------IGTISGTFGTKNWLPNVKFPDLSIMIDA 243 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 L I LAEP LTAISG+ ASF GG+ V + + +GV L F PTV Sbjct: 244 LASNGLISILAEPNLTAISGERASFLVGGEIPLPVVFGDSAN--IIYKPFGVRLDFKPTV 301 Query: 323 LSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 LS RI L+I+ EVS N +P + RKA TT+EL SG + + GLL+ Sbjct: 302 LSANRIRLQIEPEVSTIAPRTNVQIGGSSLPVFITRKASTTIELASGQSFAIGGLLQSKD 361 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 + + IPLL IPILGALFR+S F REETE+ I AT +LV+P S P D Sbjct: 362 IEQLQKIPLLGDIPILGALFRSSEFQREETELIIIATVYLVQPTRSDKFSLPTDGLLPLS 421 Query: 439 DAKAFF---FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 D + +V +S G GF Y Sbjct: 422 DIERLLAWPHKKVTPTTMGSFSSTPSQPRLLGDNGFYY 459 >gi|121600042|ref|YP_993006.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|124383335|ref|YP_001026338.1| type II secretion system protein [Burkholderia mallei NCTC 10229] gi|126450127|ref|YP_001080388.1| RhcC2 [Burkholderia mallei NCTC 10247] gi|237812165|ref|YP_002896616.1| type II/III secretion system protein [Burkholderia pseudomallei MSHR346] gi|254178619|ref|ZP_04885274.1| RhcC2 [Burkholderia mallei ATCC 10399] gi|254358540|ref|ZP_04974813.1| RhcC2 [Burkholderia mallei 2002721280] gi|121228852|gb|ABM51370.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|124291355|gb|ABN00624.1| putative type II secretion system protein [Burkholderia mallei NCTC 10229] gi|126242997|gb|ABO06090.1| RhcC2 [Burkholderia mallei NCTC 10247] gi|148027667|gb|EDK85688.1| RhcC2 [Burkholderia mallei 2002721280] gi|160699658|gb|EDP89628.1| RhcC2 [Burkholderia mallei ATCC 10399] gi|237503093|gb|ACQ95411.1| type II/III secretion system protein [Burkholderia pseudomallei MSHR346] Length = 482 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 27/452 (5%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV G +++ ++++P V V+DP ADV V +P+ +++ GK Sbjct: 45 AVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKA 104 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G + +G + + +L ++++ D L+ L + + ++++ G V + Sbjct: 105 GTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSA 164 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 D+ V+ + +L Q + ++N L +A QV L+V I EV R+I +Q+G Sbjct: 165 ADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLG 214 Query: 215 FQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALER 265 S G+S +S G FSV G R+S + VL AL++ Sbjct: 215 INWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQ 274 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ Sbjct: 275 EGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLAD 334 Query: 326 GRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ + Sbjct: 335 NRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDV 394 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P L+++P+LG LF + + ++TE+ + TP++V+P +L D + Sbjct: 395 LAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDI 454 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F R I + G GF+Y Sbjct: 455 EFVLQRSLGIDPLGG----DAPRLAGPAGFVY 482 >gi|76811933|ref|YP_333435.1| RhcC2 [Burkholderia pseudomallei 1710b] gi|126441311|ref|YP_001058908.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|126453026|ref|YP_001066150.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|134282366|ref|ZP_01769071.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|217421397|ref|ZP_03452901.1| type II/III secretion system protein [Burkholderia pseudomallei 576] gi|226196310|ref|ZP_03791892.1| type II/III secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|242314528|ref|ZP_04813544.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|254179872|ref|ZP_04886471.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|254188722|ref|ZP_04895233.1| type II/III secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254197611|ref|ZP_04904033.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|254261104|ref|ZP_04952158.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] gi|254297713|ref|ZP_04965166.1| type II/III secretion system protein [Burkholderia pseudomallei 406e] gi|76581386|gb|ABA50861.1| RhcC2 [Burkholderia pseudomallei 1710b] gi|126220804|gb|ABN84310.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|126226668|gb|ABN90208.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|134246404|gb|EBA46493.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|157806781|gb|EDO83951.1| type II/III secretion system protein [Burkholderia pseudomallei 406e] gi|157936401|gb|EDO92071.1| type II/III secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|169654352|gb|EDS87045.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|184210412|gb|EDU07455.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|217395139|gb|EEC35157.1| type II/III secretion system protein [Burkholderia pseudomallei 576] gi|225931527|gb|EEH27532.1| type II/III secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|242137767|gb|EES24169.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|254219793|gb|EET09177.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] Length = 482 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 27/452 (5%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV G +++ ++++P V V+DP ADV V +P+ +++ GK Sbjct: 45 AVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKA 104 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G + +G + + +L ++++ D L+ L + + ++++ G V + Sbjct: 105 GTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSA 164 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 D+ V+ + +L Q + ++N L +A QV L+V I EV R+I +Q+G Sbjct: 165 ADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLG 214 Query: 215 FQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALER 265 S G+S +S G FSV G R+S + VL AL++ Sbjct: 215 INWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQ 274 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ Sbjct: 275 EGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLAD 334 Query: 326 GRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ + Sbjct: 335 NRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDV 394 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P L+++P+LG LF + + ++TE+ + TP++V+P +L D + Sbjct: 395 LAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDI 454 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F R I + G GF+Y Sbjct: 455 EFVLQRSLGIDPLGG----DAPRLAGPAGFVY 482 >gi|27376953|ref|NP_768482.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110] gi|27350095|dbj|BAC47107.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110] Length = 430 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 122/441 (27%), Positives = 200/441 (45%), Gaps = 17/441 (3%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 ++I ++ + + + V+DP AD S T+++FGK G+ + Sbjct: 2 PRAAPGSTTGTLNITSSQGKTVHLSAPAATIFVADPAIADYQAPSSSTIFVFGKKSGRTS 61 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 + + +G+ + L I++ + + L L+ + D I+V +L G+ + Sbjct: 62 LFALNENGEALAELRIVVTQPLEDLRAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVE 121 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 A +++E F+ + V+N + +AG QV L V +AEV R +K + + Sbjct: 122 AARKVTEQFVG----------AGAPVVNKIQVAGSLQVNLSVRVAEVSRTAVKDLNINFT 171 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 +G + G + G GG + + VL AL LAEP LT Sbjct: 172 ASGPN-GAFLATGKPGGSGRAGGGGTIGIGFSTGNINLSAVLDALASEHLASILAEPNLT 230 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A+SG++ASF +GG+ V SV +GV L F PTVLS +I +R++ EVSE Sbjct: 231 AMSGEAASFLAGGEFPIP-VMQDNRQVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSE 289 Query: 339 PVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +N +P+ R+A T VEL SG + + GL++ + P L +PIL Sbjct: 290 LSTEGEVKINGMAVPALSTRRASTVVELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPIL 349 Query: 395 GALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 GALFR+S F + ETE+ I TP++V+P +S P + + DA N V + Sbjct: 350 GALFRSSSFQKRETELVIVVTPYIVRPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQ 409 Query: 454 PKEASEVEGQNYKGAIGFIYK 474 ++A G GFI + Sbjct: 410 GRDAPRASAPGLTGNAGFIIE 430 >gi|148253058|ref|YP_001237643.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1] gi|146405231|gb|ABQ33737.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1] Length = 496 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 127/495 (25%), Positives = 212/495 (42%), Gaps = 38/495 (7%) Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69 T ++ L ++ S+ + + + + ++IS+ +K +++ Sbjct: 4 TWAAVALMAATISIGIYGIGPARSQ--VRVVQDDPVPARQISVTRDKSRTIKLDKPFASA 61 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 LV P ADV+ S R +Y+ GK +G NV L D + + + + DI ++ +R Sbjct: 62 LVGAPDIADVLPMSDRIVYIQGKKIGTTNVTLFDQDKNVIGVIGLEVTIDIQNIASKIRS 121 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 IRV ++ +VL G R D+++AV ++ K V+N + Sbjct: 122 GTNSPGIRVSSSNNQIVLSGEARDAVDAEKAVAIARGMA----TPPEGKDPEKYVINAMR 177 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------- 233 +A QV L+V EV R ++IG +S + Sbjct: 178 VAASQQVMLRVRFIEVSRQAEREIGVNWFGANASGTRGINTGTGAISQAGPTATSAGVPV 237 Query: 234 -------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 G + G S + ++ ALE+ R LAEP L A+SG +AS Sbjct: 238 FNTIGTFAGSTLSAPFGVGLFNLANKGGSVDVLITALEKKGLARRLAEPDLVALSGDTAS 297 Query: 287 FTSGGQHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340 F +GG++ +V SS+G T V +GV L F PTVL+ G I LR+ VSE Sbjct: 298 FLAGGEYPVPSVQSSSGTTPVITVLYKPFGVQLTFVPTVLASGIINLRLTPSVSELDYTN 357 Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + ++ +P+ R+A T +EL G + +AGLL+ D + +P L +P+LG LFR Sbjct: 358 AVAISGTLVPALSKREARTAIELRDGQSFAIAGLLQSDNLRDVGQLPWLGSVPVLGTLFR 417 Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 ++ + ++ET++ + TP LV P A + L+ P D +D F R + Sbjct: 418 STSYQQKETDLVVIVTPHLVAPAAPGQALATPFDKQLPGNDVDLFLMGRPEVRKQYTD-Y 476 Query: 459 EVEGQNYKGAIGFIY 473 G G G + Sbjct: 477 LTSGGANVGPYGHMM 491 >gi|167829715|ref|ZP_02461186.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 9] Length = 510 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 72 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 131 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 132 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 190 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 191 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 250 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 251 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 306 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E Sbjct: 307 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 366 Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 367 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 426 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 427 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 486 Query: 447 RVNKIYGPKEAS 458 + G ++ Sbjct: 487 NMEGRGGLRQHG 498 >gi|134291857|ref|YP_001115626.1| type II and III secretion system protein [Burkholderia vietnamiensis G4] gi|134135046|gb|ABO59371.1| type II and III secretion system protein [Burkholderia vietnamiensis G4] Length = 647 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 121/434 (27%), Positives = 210/434 (48%), Gaps = 18/434 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 92 GAVRDSTSVSVPLGKSLLVPMPEAVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 151 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +L + + +I V + T+VL G V Q +Q+A Sbjct: 152 QGKSGACR-VIDVAVGADAGGLQASLLQLMPAERDIHVSTAAGTIVLAGTVSNSQAAQQA 210 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V+++ + +G + + V+N+L++ QV L+V +AEV + ++ Q+G +I Sbjct: 211 VQIARAYSDSAGGGEGGTAKGGGVLNMLSVTSPQQVMLEVKVAEVSKTLINQMGSALNIQ 270 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S + ++ S V + F A ++ LAEP L I Sbjct: 271 GGFGSWSGALVSNLLAGVASAA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTI 326 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SGQ A+F +GG+ SS S ++GV L FTPTVL+ GRI L++ EVS Sbjct: 327 SGQEATFLAGGKIFIPVPQSSGTGVSTITLQQEEFGVALKFTPTVLANGRISLKVAPEVS 386 Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E +P R+A TTV++ G + + GL+KD+ + IP + Sbjct: 387 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGV 446 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++P+LGALFR++ F ++ TE+ TP LVKP+ D P D +S ++A + + Sbjct: 447 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQSADQPMPTDSFSKPNEADVYATGNM 506 Query: 449 NKIYGPKEASEVEG 462 +G + + Sbjct: 507 EGRHGVRRPAAQPA 520 >gi|148976307|ref|ZP_01813031.1| type II and III secretion system protein [Vibrionales bacterium SWAT-3] gi|145964401|gb|EDK29656.1| type II and III secretion system protein [Vibrionales bacterium SWAT-3] Length = 464 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 114/459 (24%), Positives = 204/459 (44%), Gaps = 44/459 (9%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + +N+ ++++P + + +S AD + + +FGK G A + ++ Sbjct: 21 ASAASALDVTINEAKMIRLPEKAKSIFISSTHIADYQTLTNTKVMVFGKRAGSATITVLN 80 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + I + + ++ ++++ E + + L G V + + V L Sbjct: 81 EQERVIYTNKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSL 140 Query: 164 SETFLS----------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 ++ +LS ++Q +S ++++N L + +QV ++V Sbjct: 141 AKGYLSPIVNQTEQKEGSNTNKNNSSDSALTQSQPTSSKEEELINQLVVTMPNQVNIRVK 200 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 IAEV R++ ++G + G F + S T++ Sbjct: 201 IAEVSRNVSNKLGIKWGSLAGGVGQFYF-------------AKFPNVSSWGKPSITTLVD 247 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + LAEP LTA+SG+ A F GGQ +++ T T + D+GV L+FTPT Sbjct: 248 ALASNGMMSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTPT 305 Query: 322 VLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLS RI L++ EVS I + + PS+ R A TT+EL SG + L GLLK + Sbjct: 306 VLSQNRISLKVNPEVSNVSIDGQQVIQGANFPSFTTRSASTTIELASGQSFALGGLLKSE 365 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + + +PL+++IP+LG+LFR++ F R ETE+ I T +LV+P + P D Sbjct: 366 DIEQLQKVPLVAEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMQLPTDGLIPL 425 Query: 438 DDAKAFF-FNRVNKIYGPKEASEVE--GQNYKGAIGFIY 473 D + R+ + + + + G GF Y Sbjct: 426 SDVERLLALPRIQRKRTHDQDTYTDNQKPRLLGDNGFYY 464 >gi|207728106|ref|YP_002256500.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum MolK2] gi|206591351|emb|CAQ56963.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum MolK2] Length = 626 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 116/463 (25%), Positives = 214/463 (46%), Gaps = 42/463 (9%) Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83 +AA + + ++++ + K ++Q+P V++ V +P ++ S Sbjct: 74 PATAEASRESAAKGPNCTGAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVS 133 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142 P+T+YL G+ VG N+I+ G G +D+ + D L+ TLR + + N++V + Sbjct: 134 PQTLYLLGQEVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQSTLRTLMPGAKNVQVSAAA 192 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYANSS 180 D++VL G V +Q+ ++++ F+ G A Sbjct: 193 DSLVLGGSVSDSVQAQKVLDIANAFVMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPR 252 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 S +++N++ + QV L+V +AEV + ++ Q+G ++ +G S+ F+S Sbjct: 253 SPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNV----NGAFGSWTFGALANFLS 308 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 D + + L A + ++ LAEP+L AISGQ ASF +GG+ Sbjct: 309 GSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVSQG 368 Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGD 347 + + +GV L FTPTV+ GRI L++ EVSE N Sbjct: 369 AATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSI 428 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P R+A TT+++ G + + GL+K+++ + IP + ++P++GAL R++ F +++ Sbjct: 429 LPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQ 488 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 TE+ TP LVKP+ P D + + A+ F + Sbjct: 489 TELVFVVTPHLVKPL-PAQYPLPTDSFGRANPAEIFLNGNMEG 530 >gi|53719431|ref|YP_108417.1| putative fimbriae assembly-related protein [Burkholderia pseudomallei K96243] gi|167815898|ref|ZP_02447578.1| RhcC2 [Burkholderia pseudomallei 91] gi|167845816|ref|ZP_02471324.1| RhcC2 [Burkholderia pseudomallei B7210] gi|52209845|emb|CAH35817.1| putative fimbriae assembly-related protein [Burkholderia pseudomallei K96243] Length = 439 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 27/452 (5%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV G +++ ++++P V V+DP ADV V +P+ +++ GK Sbjct: 2 AVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKA 61 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G + +G + + +L ++++ D L+ L + + ++++ G V + Sbjct: 62 GTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSA 121 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 D+ V+ + +L Q + ++N L +A QV L+V I EV R+I +Q+G Sbjct: 122 ADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLG 171 Query: 215 FQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALER 265 S G+S +S G FSV G R+S + VL AL++ Sbjct: 172 INWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQ 231 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ Sbjct: 232 EGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLAD 291 Query: 326 GRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ + Sbjct: 292 NRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDV 351 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P L+++P+LG LF + + ++TE+ + TP++V+P +L D + Sbjct: 352 LAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDI 411 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F R I + G GF+Y Sbjct: 412 EFVLQRSLGIDPLGG----DAPRLAGPAGFVY 439 >gi|258405291|ref|YP_003198033.1| type II and III secretion system protein [Desulfohalobium retbaense DSM 5692] gi|257797518|gb|ACV68455.1| type II and III secretion system protein [Desulfohalobium retbaense DSM 5692] Length = 455 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 119/441 (26%), Positives = 202/441 (45%), Gaps = 22/441 (4%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG--KKISIGLNKVIILQVPVDVQD 68 ++ + V +P +A I + + + + K ++L+ ++ Sbjct: 11 LLIAAIMVLTFCVWSIPQEPQAQEFRIIPTKNSADDSIMRSLELTYGKSVVLKSNREITR 70 Query: 69 VLVSDPTKA-DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 V DP D ++ P +YL G AN+IL + +I ++ D++ L+ L Sbjct: 71 VSEPDPNVLKDPLLIGPNELYLTPAGAGTANLILW-QGKEVSTVYEITVKHDLSRLKQRL 129 Query: 128 RRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 + N +RV ++++ L G V + + + L+ET+ + G + N Sbjct: 130 HELFPEENELRVLSTNESITLSGQVSSASALDQIMALAETYAPEGG-----------IKN 178 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 + + G QV L+V +AEV R L ++G + ++ S F G F+ Sbjct: 179 QVTVKGIHQVMLEVKVAEVSRQSLDRLGINFDLINDAAEFSIGFLGAASAGSSGS-GSFN 237 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 D F + L+R + LAEP+L ++SGQ++SF +GG+ V S G Sbjct: 238 FWRNGDNVDFNGLFDFLKREGLAKILAEPSLISMSGQTSSFLAGGEIPIPDV-DSDGNIG 296 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVEL 362 V YG+ L FTPTV+S RI +++ VSE +N +P +VR+A+TTVEL Sbjct: 297 VEFKSYGIELAFTPTVMSKERIAIKVVPVVSELDEASGTVINGAQVPGLKVRRANTTVEL 356 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G + +AGLL ++ ++ P L +P+LG LF + F +ETE+ I TP LV P+ Sbjct: 357 GDGQSFAIAGLLSENSEETVSKFPGLGDLPVLGPLFTSKSFTSDETELVIMVTPKLVTPL 416 Query: 423 AMRDLSRPDDHYSVEDDAKAF 443 S P D + DA+ + Sbjct: 417 VAEKQSLPTDFFIHPTDAEFY 437 >gi|167824270|ref|ZP_02455741.1| type II/III secretion system protein [Burkholderia pseudomallei 9] gi|167919049|ref|ZP_02506140.1| type II/III secretion system protein [Burkholderia pseudomallei BCC215] Length = 444 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 129/458 (28%), Positives = 213/458 (46%), Gaps = 27/458 (5%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 AV G +++ ++++P V V+DP ADV V +P+ ++ Sbjct: 1 ALALGMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVF 60 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 + GK G + +G + + +L ++++ D L+ L + + ++++ Sbjct: 61 VLGKKAGTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVS 120 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G V + D+ V+ + +L Q + ++N L +A QV L+V I EV R+ Sbjct: 121 GRVPSAADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRN 170 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETV 259 I +Q+G S G+S +S G FSV G R+S + V Sbjct: 171 ITQQLGINWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGV 230 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FT Sbjct: 231 LDALDQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFT 290 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLK 375 PTVL+ RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ Sbjct: 291 PTVLADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQ 350 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 + +P L+++P+LG LF + + ++TE+ + TP++V+P +L D + Sbjct: 351 SKSSDVLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVT 410 Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F R I + G GF+Y Sbjct: 411 RPSSDIEFVLQRSLGIDPLGG----DAPRLAGPAGFVY 444 >gi|83719085|ref|YP_442980.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|257139204|ref|ZP_05587466.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|83652910|gb|ABC36973.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 492 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 126/451 (27%), Positives = 210/451 (46%), Gaps = 27/451 (5%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V +++ ++++P V V+DP ADV V +P+ +++ GK G Sbjct: 56 VAPRLARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAG 115 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 + +G + + +L +++ D L+ L ++ + ++++ G V + Sbjct: 116 TTTLFALGANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAA 175 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 D+ V+ + +L Q + ++N L +A QV L+V I EV R+I +Q+G Sbjct: 176 DADAVVQTLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGI 225 Query: 216 QHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERA 266 S G+S +S G FSV G +S + VL AL++ Sbjct: 226 NWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQE 285 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ Sbjct: 286 GLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADN 345 Query: 327 RIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ + Sbjct: 346 RISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVL 405 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +P L+++P+LG LF + + ++TE+ + TP++V+P +L D + Sbjct: 406 AELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIE 465 Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F R I + G GF+Y Sbjct: 466 FVLQRSLGIDPLGG----DAPRLTGPAGFVY 492 >gi|254182583|ref|ZP_04889177.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|184213118|gb|EDU10161.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] Length = 690 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQA 212 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388 Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508 Query: 447 RVNKIYGPKEAS 458 + G ++ Sbjct: 509 NMEGRGGLRQHG 520 >gi|167911033|ref|ZP_02498124.1| type II/III secretion system protein [Burkholderia pseudomallei 112] Length = 438 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 27/452 (5%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV G +++ ++++P V V+DP ADV V +P+ +++ GK Sbjct: 1 AVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKA 60 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G + +G + + +L ++++ D L+ L + + ++++ G V + Sbjct: 61 GTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSA 120 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 D+ V+ + +L Q + ++N L +A QV L+V I EV R+I +Q+G Sbjct: 121 ADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLG 170 Query: 215 FQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALER 265 S G+S +S G FSV G R+S + VL AL++ Sbjct: 171 INWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQ 230 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ Sbjct: 231 EGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLAD 290 Query: 326 GRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L+++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ + Sbjct: 291 NRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDV 350 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P L+++P+LG LF + + ++TE+ + TP++V+P +L D + Sbjct: 351 LAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDI 410 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F R I + G GF+Y Sbjct: 411 EFVLQRSLGIDPLGG----DAPRLAGPAGFVY 438 >gi|323493503|ref|ZP_08098625.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546] gi|323312326|gb|EGA65468.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546] Length = 458 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 113/453 (24%), Positives = 194/453 (42%), Gaps = 38/453 (8%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + +N+ ++ +P D + + +S+ AD + + +FG G A + ++ Sbjct: 21 ASLAAPLEVTINQAKMINLPQDAKSIFISNTHVADYQPMTNTKIMVFGLQAGSATITILN 80 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + N I + D L + +++++ E + + L G V T + V + Sbjct: 81 AQERVIYNNKIRVTHDTFELNSLISSQFPEASVKSESLGGKLWLKGSVPTPVMAHSIVNI 140 Query: 164 SETFLSQSGRN----------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 ++ +LS + S +++N L + QV ++V IAEV R Sbjct: 141 AKGYLSPPTAGQSSDSSSDSESSNNTSEQQGDSGNELVNQLVVTMPTQVNIRVRIAEVSR 200 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 ++ ++G + S G A + + ++ AL Sbjct: 201 NVSNKLGIKWGSLESGMGSFLYTKA-------------WDVSSWGKPTLGALIDALASDG 247 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + LAEP LTA+SG+ A+F GG+ + T V +GV L+FTP VL P R Sbjct: 248 TMSILAEPNLTAMSGEEANFLVGGEIPLPLIIGDTAT--VEYKPFGVNLNFTPVVLGPDR 305 Query: 328 IGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 I LR+ EVS + +N PS+ R+A TT+EL SG + L GLL+ + Sbjct: 306 ISLRVSPEVSSISVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQ 365 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +P + +P+LG LFR+S + R ETE+ I AT +LV+PV + P D D + Sbjct: 366 KLPGIGDMPVLGGLFRSSDYQRRETELIIIATAYLVEPVRNDAIPLPTDSLLPLSDLERL 425 Query: 444 F---FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 R ++ G ++ G GF Y Sbjct: 426 LAIPRKRDKQVKGKATYTDNRAPRLLGDNGFYY 458 >gi|167620125|ref|ZP_02388756.1| type II/III secretion system protein [Burkholderia thailandensis Bt4] Length = 427 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 125/441 (28%), Positives = 209/441 (47%), Gaps = 27/441 (6%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 +++ ++++P V V+DP ADV V +P+ +++ GK G + +G + Sbjct: 1 PAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGAN 60 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + +L +++ D L+ L ++ + ++++ G V + D+ V+ + Sbjct: 61 DRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVVQTLK 120 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 +L Q + ++N L +A QV L+V I EV R+I +Q+G S G+S Sbjct: 121 PYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGN 170 Query: 226 PSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPT 276 +S G FSV G +S + VL AL++ I LAEP Sbjct: 171 FVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPN 230 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EV Sbjct: 231 LTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEV 290 Query: 337 SEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 SE + +P+ VR+ DTTVEL SG + + GLL+ + +P L+++P Sbjct: 291 SEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLP 350 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +LG LF + + ++TE+ + TP++V+P +L D + F R I Sbjct: 351 VLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIEFVLQRSLGID 410 Query: 453 GPKEASEVEGQNYKGAIGFIY 473 + G GF+Y Sbjct: 411 PLGG----DAPRLTGPAGFVY 427 >gi|237509564|ref|ZP_04522279.1| type II/III secretion system protein [Burkholderia pseudomallei MSHR346] gi|235001769|gb|EEP51193.1| type II/III secretion system protein [Burkholderia pseudomallei MSHR346] Length = 690 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 123/430 (28%), Positives = 219/430 (50%), Gaps = 20/430 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQA 212 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388 Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508 Query: 447 RVNKIYGPKE 456 + G ++ Sbjct: 509 NMEGRGGLRQ 518 >gi|187919324|ref|YP_001888355.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] gi|187717762|gb|ACD18985.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] Length = 595 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 122/477 (25%), Positives = 214/477 (44%), Gaps = 45/477 (9%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72 +++ A + + ++I + K ++ V V+ V Sbjct: 78 VHLTIAASGMGPGAASGGAQQGARGPNCSGPVAEHSSVTIPVGKSTMVDVREPVKSRSVG 137 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 +P ++ SP+T+YL G +VG N+I+ G G +D+ + D L+ TL + Sbjct: 138 NPAIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSC-TIIDVSVGADPGGLQQTLAALMP 196 Query: 133 DS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY--------------- 176 + I+V+ +DT+VL G V ++R +EL+ F+++ Sbjct: 197 EETGIQVKAAADTLVLTGTVSDAVKAERVLELARAFVARPTAALQGGAPMGSGPLPVGAA 256 Query: 177 -----------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 +S ++++N++++A QV L+V +AEV + ++ Q+G +I G Sbjct: 257 PRAMGMPAPTLGGASGERIINMMHVAAPQQVMLEVKVAEVSKTLIDQLGVAANINGGIGS 316 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 S AD ++S G + + A + ++ LAEP L AISGQ A Sbjct: 317 WSFGLLAD----YLSGGLSALTASKANNSPLRAAIDAQKTDQLVKILAEPNLMAISGQEA 372 Query: 286 SFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 SF +GG+ S + + YGV L FTPTVL GRI L++ EVSE Sbjct: 373 SFLAGGKVYIPVPQSNGANGTTIVLQEEQYGVGLTFTPTVLEGGRINLKVSPEVSELSST 432 Query: 343 ---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 N +P R+A TT+++ G + + GLLK +I +G+P +++P+ Sbjct: 433 GVVVSAGNSNNQTILPLITTRRASTTLQVFDGQSFAIGGLLKSNITGSIKGLPGAAELPV 492 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 LGALFR++ + +++TE+ TP L KP+ + P DH+ +A + + Sbjct: 493 LGALFRSTSYEQDKTELVFVVTPRLAKPL-PQHYPLPTDHFGDASEANVYLTGHMEG 548 >gi|167738675|ref|ZP_02411449.1| type II/III secretion system protein [Burkholderia pseudomallei 14] Length = 434 Score = 300 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 127/446 (28%), Positives = 211/446 (47%), Gaps = 27/446 (6%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 G +++ ++++P V V+DP ADV V +P+ +++ GK G + Sbjct: 3 ARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLF 62 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 +G + + +L ++++ D L+ L + + ++++ G V + D+ Sbjct: 63 ALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAV 122 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V+ + +L Q + ++N L +A QV L+V I EV R+I +Q+G S Sbjct: 123 VQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSAL 172 Query: 221 GSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRT 271 G+S +S G FSV G R+S + VL AL++ I Sbjct: 173 GASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITM 232 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+ Sbjct: 233 LAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLK 292 Query: 332 IQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++ EVSE + +P+ VR+ DTTVEL SG + + GLL+ + +P Sbjct: 293 VRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPG 352 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L+++P+LG LF + + ++TE+ + TP++V+P +L D + F R Sbjct: 353 LARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQR 412 Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIY 473 I + G GF+Y Sbjct: 413 SLGIDPLGG----DAPRLAGPAGFVY 434 >gi|167744175|ref|ZP_02416949.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 14] Length = 439 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 123/438 (28%), Positives = 219/438 (50%), Gaps = 20/438 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 6 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 65 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 66 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 124 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 125 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 184 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 185 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 240 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E Sbjct: 241 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 300 Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 301 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 360 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 361 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 420 Query: 447 RVNKIYGPKEASEVEGQN 464 + G ++ Sbjct: 421 NMEGRGGLRQHGAAPAAA 438 >gi|260463894|ref|ZP_05812090.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259030269|gb|EEW31549.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 481 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 123/478 (25%), Positives = 218/478 (45%), Gaps = 26/478 (5%) Query: 1 MRYL-----QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN 55 MR L + F +++ + + ++ A+ ++ +S + I + Sbjct: 3 MRTLYGMTGRSCFVRALAMAVSLAAGAMLAFAGAARADNDIVYVSATKNA---SIKVAKG 59 Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 K + +++ DP A+V + ++ Y+ G N+G + L + + +DI Sbjct: 60 KPKTIITSAAFYQIVIGDPEIANVNPLTDKSFYVLGNNLGTTGIALFDDKKQLVGTVDIE 119 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + D L T+R + D+ I+V + VVL G +++A +++ F Sbjct: 120 VTLDTDELANTIRASVPDAKIKVGSANGRVVLSGEADDAVAAEKANKIATRFSGN----- 174 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 ++V+N +NI+ QV L V E+ R + +G ++S + + + + G Sbjct: 175 ------EEVINSVNISSSQQVQLNVRFVEINRQAGQDLGAKYSANFAYGFGGRDVSLEPG 228 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G+ + + + S + + ALE R LAEP L A SG++ASF +GG+ Sbjct: 229 TVPAAGTGEIIGRLLSNGVSIDIAIKALEERGLARRLAEPNLIARSGETASFLAGGEFPI 288 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSY 351 VS G SV+ YGV L F PTVL G + L I EVS + +P + Sbjct: 289 P-VSEENGKISVSYKKYGVSLDFKPTVLKDGLVSLDIAPEVSSIDASASYNIGNISVPGF 347 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 VR+A T+V+L +G + ++AGLL+ IP L K+P+LGALF + + R ET++ Sbjct: 348 IVRRARTSVDLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPVLGALFSSKSYQRRETDLV 407 Query: 412 IAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 I TP+LVKPV + ++ P + +A +F N ++ G + + A Sbjct: 408 IIVTPYLVKPVDPSKKMAEPTNGTQPASNAD-YFLNNTEEVKGSDTNRALAMADGGAA 464 >gi|167821374|ref|ZP_02453054.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 91] Length = 494 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 123/437 (28%), Positives = 219/437 (50%), Gaps = 20/437 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 63 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 122 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 123 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 181 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 182 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 241 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 242 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 297 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E Sbjct: 298 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 357 Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 358 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 417 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 418 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 477 Query: 447 RVNKIYGPKEASEVEGQ 463 + G ++ Sbjct: 478 NMEGRGGLRQHGAAPAA 494 >gi|186474103|ref|YP_001861445.1| type II and III secretion system protein [Burkholderia phymatum STM815] gi|184196435|gb|ACC74399.1| type II and III secretion system protein [Burkholderia phymatum STM815] Length = 700 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 123/468 (26%), Positives = 218/468 (46%), Gaps = 47/468 (10%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 I + ++I + K ++ V V+ V +P+ ++ SP+T+YL G +VG N+I Sbjct: 109 TGAIADHQTVTIPIGKSTMVNVRESVKTRTVGNPSIVQAMLVSPQTLYLLGTDVGTTNMI 168 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQR 159 + G G +D+ + D L+ TL + + ++V+ +DT+VL G V ++R Sbjct: 169 VQGRSGSC-TVIDVAVGADPGGLQQTLAVLMPEESGVQVKAAADTLVLTGTVSDSVKAER 227 Query: 160 AVELSETFLSQSG--------------------------RNQYANSSSKKVMNLLNIAGE 193 VEL+ ++++ N ++++++N++++A Sbjct: 228 IVELARAYVARQAAPVPVAAPANAGGAQGGAMIPAVLKPAGASGNGNNERIVNMMHVAAP 287 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L+V +AEV + ++ Q+G + G + S++ F+S G + + Sbjct: 288 QQVMLEVKVAEVSKTLIDQLGMA----ANIQGGTGSWSFGLLADFLSGGMGALLGSKANN 343 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTH 310 + A + ++ LAEPTL AISGQ ASF +GG+ S+ + Sbjct: 344 KPLNFAIDAQKTDQLVKVLAEPTLMAISGQEASFLAGGRVFIPVPQSNGAAGSTIILQEE 403 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVE 361 +GV L FTPTVL GRI L++ EVSE +P R+A TT++ Sbjct: 404 TFGVGLTFTPTVLDNGRINLKVSPEVSELSPTGVAVTAGTVSTTAVLPLITTRRASTTLQ 463 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G + + GL+K ++ +G+P L ++P+LGALFR++ F ++TE+ TP L KP Sbjct: 464 VYDGQSFAIGGLMKSNVTGTLKGLPGLGEVPVLGALFRSTNFQEDKTELVFVVTPRLAKP 523 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 + ++ P DH+ +A FF + +A GA Sbjct: 524 L-PQNYPLPTDHFGKVTEAGVFFTGNMEG--KKPQAPAEAVPPSTGAA 568 >gi|76819084|ref|YP_336469.1| phospholipid-binding domain-containing protein [Burkholderia pseudomallei 1710b] gi|254264517|ref|ZP_04955382.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] gi|76583557|gb|ABA53031.1| Putative phospholipid-binding domain family [Burkholderia pseudomallei 1710b] gi|254215519|gb|EET04904.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] Length = 690 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388 Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508 Query: 447 RVNKIYGPKEAS 458 + G ++ Sbjct: 509 NMEGRGGLRQHG 520 >gi|126456485|ref|YP_001076989.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|242311194|ref|ZP_04810211.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|126230253|gb|ABN93666.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|242134433|gb|EES20836.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] Length = 690 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 123/430 (28%), Positives = 219/430 (50%), Gaps = 20/430 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388 Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508 Query: 447 RVNKIYGPKE 456 + G ++ Sbjct: 509 NMEGRGGLRQ 518 >gi|167841773|ref|ZP_02468457.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 484 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 129/438 (29%), Positives = 221/438 (50%), Gaps = 26/438 (5%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 15 GEMRESTNVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 74 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 75 QGKSGAC-QIIDVAVGADADGLQTSLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 133 Query: 161 VELSETFLSQSGRNQYAN--------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 V +++ + ++ N SS V+N+L + QV L+V +AEV + ++ Q Sbjct: 134 VAIAKAYSDRTNAGAAGNGNGNGGGGSSRADVLNMLTVTSPQQVMLEVKVAEVSKTLINQ 193 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 +G +I G S+ ++ G V ++ + A + ++ L Sbjct: 194 MGSAVNI----QGGFGSWTGALMTSLLTGVGSGIVASKSNKLPLSGAIDAQDTDQPVKIL 249 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIG 329 AEP L ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI Sbjct: 250 AEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRIS 309 Query: 330 LRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L++ EVSE N +P R+A TTV++ G T + GL+KD+ Q Sbjct: 310 LKVAPEVSELSPTGVTLSASNVGNVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQG 369 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 + +P + ++P+LGALFR++ F ++ TE+ TP LVKP+ D+ P D ++ ++A Sbjct: 370 TLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLDTADVPLPTDSFTKPNEA 429 Query: 441 KAFFFNRVNKIYGPKEAS 458 + + G ++ Sbjct: 430 DVYATGNMEGRGGLRQHG 447 >gi|296156489|ref|ZP_06839327.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] gi|295893088|gb|EFG72868.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] Length = 599 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 121/485 (24%), Positives = 216/485 (44%), Gaps = 46/485 (9%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAA-VINISDVEIGKGKKISIGLNKVIILQVPVD 65 T + S+ L + + A + + ++I + K ++ V Sbjct: 75 TVASNGSVHLTIAASGMGPGAYSGGAQQGGRGPNCTGPVAEHSSVTIPVGKSAMVDVREP 134 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 V+ V +P+ ++ SP+T+YL G +VG N+I+ G G +D+ + D L+ Sbjct: 135 VKSRTVGNPSIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSC-TIIDVSVGADPGGLQQ 193 Query: 126 TLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY-------- 176 TL + + I+V+ +DT+VL G V + R +EL+ F+++ Sbjct: 194 TLAALMPEETGIQVKAAADTLVLTGTVSDAVKADRVLELARAFVARPTTALQGGAPMGSG 253 Query: 177 ------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + ++++N++++A QV L+V +AEV + ++ Q+G + Sbjct: 254 PLPVGAAPRAMGMPAPSLGGAGGERIINMMHVAAPQQVMLEVKVAEVSKTLIDQLGVAAN 313 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G S AD ++S G + + + A + ++ LAEP L Sbjct: 314 INGGIGSWSFGLLAD----YLSGGLSALTASKANNSPLKAAIDAQKTDQLVKILAEPNLM 369 Query: 279 AISGQSASFTSGGQHLYKTVS---SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 AISGQ ASF +GG+ S + YGV L FTPTVL GRI L++ E Sbjct: 370 AISGQEASFLAGGKVYIPVPQSNGSGGTTIVLQEEQYGVGLTFTPTVLEGGRINLKVSPE 429 Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE +P R+A TT+++ G + + GLLK ++ +G+P Sbjct: 430 VSELSSTGVVVSAGNSNTTSILPLITTRRASTTLQVFDGQSFAIGGLLKSNVTGSIKGLP 489 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 +++P+LGALFR++ + +++TE+ TP L KP+ + P D++ +A + Sbjct: 490 GAAELPVLGALFRSTSYEQDKTELVFVVTPRLAKPL-PQHYPLPTDNFGDASEANVYLTG 548 Query: 447 RVNKI 451 + Sbjct: 549 HMEGT 553 >gi|261251598|ref|ZP_05944172.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] gi|260938471|gb|EEX94459.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] Length = 457 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 117/449 (26%), Positives = 199/449 (44%), Gaps = 37/449 (8%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + +N+ ++ +P D + + +S+ AD + + +FG G A + ++ Sbjct: 24 AAPLEVNINEAKMINLPQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQE 83 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + N I + D L+ + ++++ E + + L G V T + V +++ Sbjct: 84 RVIYNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKG 143 Query: 167 FLS---------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 +LS S + +S +++N L + QV ++V IAEV R++ Sbjct: 144 YLSPVIAPQQSENGSTSSDSSTQNSGSDNSDELVNQLMVTMPTQVNIRVRIAEVSRNVSN 203 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 ++G + + G A + + ++ AL + Sbjct: 204 KLGIKWGSLQAGMGSFLYTKA-------------WDVSSWGKPTLGALVDALASDGTMSI 250 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP LTA+SG+ ASF GG+ ++ T V +GV L+FTP VL P RI LR Sbjct: 251 LAEPNLTAMSGEDASFLVGGEIPLPLINGDTAT--VEYKPFGVNLNFTPVVLGPDRISLR 308 Query: 332 IQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVS + +N PS+ R+A TT+EL SG + L GLL+ + +P Sbjct: 309 VSPEVSSVSVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQKLPG 368 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF--- 444 IPILG LFR+S + R+ETE+ I AT +LV+PV L P D+ D + Sbjct: 369 AGDIPILGGLFRSSEYQRKETELIIIATAYLVEPVRNDALPLPTDNLLPLSDLERLLAIP 428 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 +R ++ G ++ G GF Y Sbjct: 429 RSRGKQVKGKDTYTDNRAPRLLGDNGFYY 457 >gi|167851182|ref|ZP_02476690.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei B7210] Length = 449 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 125/445 (28%), Positives = 220/445 (49%), Gaps = 20/445 (4%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 A E+ + +S+ L K ++L + V++ + +P A + SPRT+Y Sbjct: 1 AAAAVPLRGPSCVGEMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLY 60 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147 L G +VG N+I+ G G +D+ + D L+ +LR+ + +IRV +DT+VL Sbjct: 61 LVGMSVGTTNMIVQGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVL 119 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEV 205 G V + Q +Q+AV +++ + +++ + + V+N+L + QV L+V +AEV Sbjct: 120 AGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEV 179 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + ++ Q+G +I G + + ++ G ++ + A Sbjct: 180 SKTLINQMGSAVNIQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNT 235 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTV 322 ++ LAEP L ISGQ A+F +GG+ SS T ++ ++GV L FTPTV Sbjct: 236 DQPVKILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTV 295 Query: 323 LSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 LS GRI L++ EVSE N +P R+A TTV++ G T + GL Sbjct: 296 LSNGRISLKVAPEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGL 355 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 +KD+ Q + +P + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D Sbjct: 356 IKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDS 415 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEAS 458 ++ ++A + + G ++ Sbjct: 416 FTKPNEADVYATGNMEGRGGLRQHG 440 >gi|302381756|ref|YP_003817579.1| type II and III secretion system protein [Brevundimonas subvibrioides ATCC 15264] gi|302192384|gb|ADK99955.1| type II and III secretion system protein [Brevundimonas subvibrioides ATCC 15264] Length = 520 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 141/508 (27%), Positives = 238/508 (46%), Gaps = 68/508 (13%) Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84 LP A + + + I++ + +P D +DV+VS+P A+ VHSP Sbjct: 23 TLPSAVLAQDHAGSQTVAAGSGPRLINLPRGTSFAVDLPADARDVIVSNPAVAEANVHSP 82 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 R + + G G+ + + + G+ +L L + ++ + L+ TL R + + E V+D+ Sbjct: 83 RRITVIGIAPGETDAVFLDAAGRSILTLRVRVDAGVTALQDTLSRVAPGAQVHAEAVNDS 142 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 +VL G+V + S++ +++ F+ S+ +KV+N+L IAG DQVTLKV I E Sbjct: 143 IVLTGLVTSAAQSEQVAQVARAFV----------SAPEKVLNMLTIAGSDQVTLKVRIIE 192 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEGGDFSVKGVLDRFSF--- 256 V+R+ +KQ+GF + G ++ + G + + F Sbjct: 193 VQRNAIKQLGFDTAAALGRVGDTQFLLSQAASFGVNGSLLGGISAGVSRNTTQNFQLQGP 252 Query: 257 -----------------------------------------ETVLHALERATAIRTLAEP 275 ++ A ER IRTLAEP Sbjct: 253 CGPGFPADSLCPFTVDGPEDASNWDTAQPGTGPGSDDLNKGNAMIKAFERVGLIRTLAEP 312 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 LT+++G+SASF +GG+ T G ++ YGV L F P VLS GRI L+I E Sbjct: 313 NLTSVNGESASFLAGGEFPVPTGRDRDGNVTIEFKPYGVSLGFRPIVLSEGRISLQISAE 372 Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE A ++ VR+ TVE+PSGG++++AGLL++ +Q + +P Sbjct: 373 VSELTQTGGITLGAGTSTALNIAGLNVRRVQNTVEIPSGGSMMIAGLLQESTRQAIDSLP 432 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 L +P+LG LFR+ + ETE+ + P++V P + L P D + DA+ FF Sbjct: 433 GLGGLPVLGQLFRSRDYLSGETELVVIVEPYIVTPTSPNRLQTPADGLRIATDAQTIFFG 492 Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474 ++N+ YG ++ ++G +G++ + Sbjct: 493 QLNQAYGSPAPTDTASAGWQGPVGYVIE 520 >gi|167916476|ref|ZP_02503567.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 112] Length = 452 Score = 298 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 124/445 (27%), Positives = 220/445 (49%), Gaps = 20/445 (4%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 A E+ + +S+ L K +++ + V++ + +P A + SPRT+Y Sbjct: 1 AAAAVPLRGPSCVGEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLY 60 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147 L G +VG N+I+ G G +D+ + D L+ +LR+ + +IRV +DT+VL Sbjct: 61 LVGMSVGTTNMIVQGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVL 119 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEV 205 G V + Q +Q+AV +++ + +++ + + V+N+L + QV L+V +AEV Sbjct: 120 AGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEV 179 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + ++ Q+G +I G + + ++ G ++ + A Sbjct: 180 SKTLINQMGSAVNIQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNT 235 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTV 322 ++ LAEP L ISGQ A+F +GG+ SS T ++ ++GV L FTPTV Sbjct: 236 DQPVKILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTV 295 Query: 323 LSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 LS GRI L++ EVSE N +P R+A TTV++ G T + GL Sbjct: 296 LSNGRISLKVAPEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGL 355 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 +KD+ Q + +P + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D Sbjct: 356 IKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDS 415 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEAS 458 ++ ++A + + G ++ Sbjct: 416 FTKPNEADVYATGNMEGRGGLRQHG 440 >gi|300704930|ref|YP_003746533.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957] gi|299072594|emb|CBJ43944.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957] Length = 622 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 117/463 (25%), Positives = 215/463 (46%), Gaps = 42/463 (9%) Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83 A +AA + + ++++ + K ++Q+P V++ V +P ++ S Sbjct: 74 AATAEASRESAAKGPNCTGAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVS 133 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142 P+T+YL G+ VG N+I+ G G +D+ + D L+ TLR + + N++V + Sbjct: 134 PQTLYLLGQEVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQSTLRTLVPGAKNVQVSAAA 192 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYANSS 180 D++VL G V +Q+ ++++ F+ G A Sbjct: 193 DSLVLSGSVSDSVQAQKVLDIANAFVMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPR 252 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 S +++N++ + QV L+V +AEV + ++ Q+G ++ +G S+ F+S Sbjct: 253 SPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNV----NGAFGSWTFGALANFLS 308 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 D + + L A + ++ LAEP+L AISGQ ASF +GG+ Sbjct: 309 GSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVAQG 368 Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGD 347 + + +GV L FTPTV+ GRI L++ EVSE N Sbjct: 369 AATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSI 428 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P R+A TT+++ G + + GL+K+++ + IP + ++P++GAL R++ F +++ Sbjct: 429 LPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQ 488 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 TE+ TP LVKP+ P D + + A+ F + Sbjct: 489 TELVFVVTPRLVKPL-PAQYPLPTDSFGQANPAEIFLNGNMEG 530 >gi|167894387|ref|ZP_02481789.1| type II/III secretion system protein [Burkholderia pseudomallei 7894] Length = 426 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 126/437 (28%), Positives = 210/437 (48%), Gaps = 27/437 (6%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ ++++P V V+DP ADV V +P+ +++ GK G + +G + + + Sbjct: 4 LAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTI 63 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 L ++++ D L+ L + + ++++ G V + D+ V+ + +L Sbjct: 64 LRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLR 123 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 Q + ++N L +A QV L+V I EV R+I +Q+G S G+S Sbjct: 124 QQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNFVGG 173 Query: 230 FAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAI 280 +S G FSV G R+S + VL AL++ I LAEP LTAI Sbjct: 174 LFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAI 233 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 SGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE Sbjct: 234 SGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEID 293 Query: 341 IGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG Sbjct: 294 PTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGK 353 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 LF + + ++TE+ + TP++V+P +L D + F R I Sbjct: 354 LFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGIDPLGG 413 Query: 457 ASEVEGQNYKGAIGFIY 473 + G GF+Y Sbjct: 414 ----DAPRLAGPAGFVY 426 >gi|167574003|ref|ZP_02366877.1| type II/III secretion system protein [Burkholderia oklahomensis C6786] Length = 548 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 124/429 (28%), Positives = 216/429 (50%), Gaps = 22/429 (5%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 90 GEMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIV 149 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V Q +Q+A Sbjct: 150 QGRSGAC-QIIDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAGNVSDAQAAQQA 208 Query: 161 VELSETFLSQSGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 V +++ + ++ A + + V+N+L + QV L+V +AEV + ++ Q+G Sbjct: 209 VAIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMGSA 268 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 +I G + + G+ ++ F+ L A ++ LAEP Sbjct: 269 INIQGGFGSWTGMLVSSLLAGV----GNGIAASKSNKLPFKAALDAQNTDQPVKILAEPR 324 Query: 277 LTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 L ISGQ A+F +GG+ + ++ + T ++ ++GV L FTPTVLS GRI L++ Sbjct: 325 LVTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLKVA 384 Query: 334 TEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 EVSE +P R+A TTV++ G T + GL+KD+ Q Sbjct: 385 PEVSELSPTGVTLSATNVSGVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLRA 444 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +P + +IP+LGALFR++ F ++ TE+ TP LVKP+ D+ P D ++ ++ + Sbjct: 445 LPGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEVDVYA 504 Query: 445 FNRVNKIYG 453 + G Sbjct: 505 TGNMEGRGG 513 >gi|53723207|ref|YP_112192.1| outer membrane protein [Burkholderia pseudomallei K96243] gi|52213621|emb|CAH39675.1| putative outer membrane protein [Burkholderia pseudomallei K96243] Length = 690 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388 Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508 Query: 447 RVNKIYGPKEAS 458 + G ++ Sbjct: 509 NMEGRGGLRQHG 520 >gi|326388864|ref|ZP_08210446.1| type II and III secretion system protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206464|gb|EGD57299.1| type II and III secretion system protein [Novosphingobium nitrogenifigens DSM 19370] Length = 565 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 131/482 (27%), Positives = 220/482 (45%), Gaps = 38/482 (7%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 + L ++ P + P ++ + ++I + + ++ +P ++ Sbjct: 33 AILPGLPAALSAATPHMKAKPRALAVLHTTPPMTPGVTAPARSLAISIGRGELVTLPGNM 92 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 DV V++ ADV V S +Y+FGK G+ V G + + +I + ++ ++ Sbjct: 93 TDVFVANENIADVQVKSGNQLYIFGKAGGETTVYASNGRGDVIWSANIRVGNNLDSIDQM 152 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L + +++I +++TV+L G V +D+ A L + F+ + V++ Sbjct: 153 LHMAMPEAHIATATMNNTVLLTGTVSAPEDAAEAERLVKAFVGEKT----------NVIS 202 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------- 233 L +A QV L V AEV R + + I + ++SG Sbjct: 203 RLKMATPLQVNLHVKFAEVSRTLTRSIQSNWTTADATSGLKFGLGQGRSFFPQYVPGGPL 262 Query: 234 ----------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 VS G ++ + SF L E + TLAEP LTA+SG+ Sbjct: 263 GMGTATTTGATAVSPVSTGTTLALASKVFGLSFLAALDLAESIGLVSTLAEPNLTALSGE 322 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340 +A F +GG++ VSS G V +YGV L +TPTVL+ GRI LR++ EVSE Sbjct: 323 TAEFLAGGEYPIP-VSSGLGTVPVQYKNYGVSLAYTPTVLANGRISLRVRPEVSELSSDG 381 Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + +N +P+ VR+A+TT+EL SG + ++AGLLK+ Q +P +PILG+LFR Sbjct: 382 AVSLNGYSVPALSVRRAETTIELGSGQSFMIAGLLKNSSQNTIAKMPGAGDLPILGSLFR 441 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 ++ + R ETE+ I TP+LV PV ++ P D + K N + E + Sbjct: 442 STSYQRGETELVIIVTPYLVNPVDPSEIHLPTDGFKSAGALKQILGNLESDGVVDGERPK 501 Query: 460 VE 461 Sbjct: 502 PT 503 >gi|217424167|ref|ZP_03455666.1| outer membrane protein [Burkholderia pseudomallei 576] gi|217392632|gb|EEC32655.1| outer membrane protein [Burkholderia pseudomallei 576] Length = 673 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 213 VAIAKAYSNRTNAGAAGSGVGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388 Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508 Query: 447 RVNKIYGPKEAS 458 + G ++ Sbjct: 509 NMEGRGGLRQHG 520 >gi|254192422|ref|ZP_04898861.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|169649180|gb|EDS81873.1| type II/III secretion system protein [Burkholderia pseudomallei S13] Length = 690 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 123/430 (28%), Positives = 219/430 (50%), Gaps = 20/430 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388 Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508 Query: 447 RVNKIYGPKE 456 + G ++ Sbjct: 509 NMEGRGGLRQ 518 >gi|126445563|ref|YP_001064076.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|126225054|gb|ABN88559.1| type II/III secretion system protein [Burkholderia pseudomallei 668] Length = 690 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 123/436 (28%), Positives = 218/436 (50%), Gaps = 24/436 (5%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQA 212 Query: 161 VELSETFLSQSGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 V +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+G Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGNGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMG 272 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 +I G + + ++ G ++ + A ++ LAE Sbjct: 273 SAVNIQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAE 328 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 P L ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L+ Sbjct: 329 PRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLK 388 Query: 332 IQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + EVSE N +P R+A TTV++ G T + GL+KD+ Q Sbjct: 389 VAPEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTL 448 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + +P + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A Sbjct: 449 KALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADV 508 Query: 443 FFFNRVNKIYGPKEAS 458 + + G ++ Sbjct: 509 YATGNMEGRGGLRQHG 524 >gi|167725247|ref|ZP_02408483.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei DM98] Length = 448 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 124/445 (27%), Positives = 220/445 (49%), Gaps = 20/445 (4%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 A E+ + +S+ L K +++ + V++ + +P A + SPRT+Y Sbjct: 1 AAAAVPLRGPNCVGEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLY 60 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147 L G +VG N+I+ G G +D+ + D L+ +LR+ + +IRV +DT+VL Sbjct: 61 LVGMSVGTTNMIVQGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVL 119 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEV 205 G V + Q +Q+AV +++ + +++ + + V+N+L + QV L+V +AEV Sbjct: 120 AGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEV 179 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + ++ Q+G +I G + + ++ G ++ + A Sbjct: 180 SKTLINQMGSAVNIQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNT 235 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTV 322 ++ LAEP L ISGQ A+F +GG+ SS T ++ ++GV L FTPTV Sbjct: 236 DQPVKILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTV 295 Query: 323 LSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 LS GRI L++ EVSE N +P R+A TTV++ G T + GL Sbjct: 296 LSNGRISLKVAPEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGL 355 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 +KD+ Q + +P + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D Sbjct: 356 IKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDS 415 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEAS 458 ++ ++A + + G ++ Sbjct: 416 FTKPNEADVYATGNMEGRGGLRQHG 440 >gi|86360580|ref|YP_472468.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42] gi|86284682|gb|ABC93741.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42] Length = 495 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 125/495 (25%), Positives = 218/495 (44%), Gaps = 35/495 (7%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59 M +R S+ ++ S A +A + +G+ + +++ N+ + Sbjct: 1 MANGRRRIARTKSLAALAAVFSACVCLGPGFAGSASAQEKSITLGESVQHVTLPPNETLT 60 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L D+++ DVV S +++++ GK G N+ + G D + +DI + D Sbjct: 61 LNTGQPFGDLVIGSADMIDVVPLSDKSLFIRGKKTGATNISVYGDDKSLLGVIDIRVASD 120 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +R + +RV +D + L G VR + QR +E+++++ Sbjct: 121 FSEVASAIRSAAPSARVRVINSNDRIRLTGFVRDGIELQRVMEIAQSY------------ 168 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------- 232 S + V+N L ++ QV L+V + E R + +G S G+++ K+ + Sbjct: 169 SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGYGNNNRIGKATTSQGIAVDD 228 Query: 233 -----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + G + + + V++ALE+ +R LA+P L A+S Sbjct: 229 GSLARTLLDPKGAATGALPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMS 288 Query: 282 GQSASFTSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 G +ASF +GG+ T + +T AT +GV L F P VL G I L I+ EVSE Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGLINLEIEPEVSEI 348 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +N P + R A TTV L G + LAGLL+ + + +P L +IP+LGALFR Sbjct: 349 DPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQLPGLGQIPVLGALFR 408 Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 ++ F ++E+++ I TP +V+P DL P D +D + F + + Sbjct: 409 STSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALGVLE-VDKDMLRR 467 Query: 459 EVEGQNYKGAIGFIY 473 G G G Sbjct: 468 FRNGVGVTGPYGHRL 482 >gi|134281876|ref|ZP_01768583.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|134246938|gb|EBA47025.1| type II/III secretion system protein [Burkholderia pseudomallei 305] Length = 685 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 124/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K ++L + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 94 GEMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388 Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 389 VSELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508 Query: 447 RVNKIYGPKEAS 458 + G ++ Sbjct: 509 NMEGRGGLRQHG 520 >gi|167908129|ref|ZP_02495334.1| type II/III secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 460 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 124/430 (28%), Positives = 219/430 (50%), Gaps = 20/430 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K ++L + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 19 GEMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 78 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 79 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 137 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 138 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 197 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 198 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 253 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E Sbjct: 254 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 313 Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 314 VSELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 373 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 374 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 433 Query: 447 RVNKIYGPKE 456 + G ++ Sbjct: 434 NMEGRGGLRQ 443 >gi|312883754|ref|ZP_07743473.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368503|gb|EFP96036.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122] Length = 460 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 115/452 (25%), Positives = 196/452 (43%), Gaps = 40/452 (8%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + + +N+ ++ + D + + +S+ AD + + +FG G A + ++ Sbjct: 24 AEPLEVNINEAKMINLSQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQE 83 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + N I + D L+ + ++++ E + + L G V T + V +++ Sbjct: 84 RVIYNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKG 143 Query: 167 FLSQSGRNQY---------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 +LS N N + +++N L + QV ++V IAEV R++ Sbjct: 144 YLSPVTANAQSEKGSTSPDSSTHSRGNENEDELINQLVVTMPTQVNIRVRIAEVSRNVSN 203 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 ++G + G G A + + ++ AL + Sbjct: 204 KLGIKWGSVGEGIGSFLYTKA-------------WDVSSWGKPTLSGLVDALASDGTMSI 250 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP LTA+SG+ ASF GG+ ++ T V +GV L+FTP VL P RI LR Sbjct: 251 LAEPNLTAMSGEEASFLVGGEIPLPLINGDTAT--VEYKPFGVNLNFTPVVLGPDRISLR 308 Query: 332 IQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVS +N PS+ R+A TT+EL SG + L GLL+ + +P Sbjct: 309 VSPEVSSVSVSNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQKLPG 368 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF--- 444 IPILG LFR++ + R+ETE+ I AT +LV+PV L P D+ D + Sbjct: 369 AGDIPILGGLFRSNEYQRKETELIIIATAYLVEPVRNDTLPLPTDNLLPRSDLERLLVAF 428 Query: 445 ---FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + ++ G ++ G GF Y Sbjct: 429 PRKRGKQKQVKGKDTYTDNRAPRLLGDNGFYY 460 >gi|167617230|ref|ZP_02385861.1| Bacterial type II and III secretion system protein domain protein [Burkholderia thailandensis Bt4] Length = 468 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 124/433 (28%), Positives = 216/433 (49%), Gaps = 21/433 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 +G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 15 GAMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 74 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 75 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 133 Query: 161 VELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 V +++ + ++ V+N+L + QV L+V +AEV + ++ Q+G Sbjct: 134 VAIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAV 193 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 ++ G + + ++ G+ ++ + A ++ LAEP L Sbjct: 194 NLQGGFGSWTGALVTSL----LTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRL 249 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334 ISGQ A+F +GG+ SS TS ++GV L FTPTVLS GRI L++ Sbjct: 250 VTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAP 309 Query: 335 EVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 EVSE +P R+A TTV++ G T + GL+KD+ Q + + Sbjct: 310 EVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKAL 369 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A + Sbjct: 370 PGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYAT 429 Query: 446 NRVNKIYGPKEAS 458 + G ++ Sbjct: 430 GNMEGRGGLRQHG 442 >gi|167579115|ref|ZP_02371989.1| Bacterial type II and III secretion system protein domain protein [Burkholderia thailandensis TXDOH] Length = 462 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 124/433 (28%), Positives = 216/433 (49%), Gaps = 21/433 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 +G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 15 GAMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 74 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 75 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 133 Query: 161 VELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 V +++ + ++ V+N+L + QV L+V +AEV + ++ Q+G Sbjct: 134 VAIAKAYSDRTNAAALGGGGGGPRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAV 193 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 ++ G + + ++ G+ ++ + A ++ LAEP L Sbjct: 194 NLQGGFGSWTGALVTSL----LTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRL 249 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334 ISGQ A+F +GG+ SS TS ++GV L FTPTVLS GRI L++ Sbjct: 250 VTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAP 309 Query: 335 EVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 EVSE +P R+A TTV++ G T + GL+KD+ Q + + Sbjct: 310 EVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKAL 369 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A + Sbjct: 370 PGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYAT 429 Query: 446 NRVNKIYGPKEAS 458 + G ++ Sbjct: 430 GNMEGRGGLRQHG 442 >gi|46204251|ref|ZP_00050268.2| COG4964: Flp pilus assembly protein, secretin CpaC [Magnetospirillum magnetotacticum MS-1] Length = 472 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 132/435 (30%), Positives = 218/435 (50%), Gaps = 24/435 (5%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 L+ ++S P+ P A + G+ +++ + + +I+ + Sbjct: 6 RLRTIVLALLSAACLGQVPARRAKTPDCPAR-PRSDDRAERSGQSRRVELSKGRSLIVDL 64 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 P D ++V V++P A+ VV S R ++L G G ++ ++ +G+Q+ LD+ I RDI Sbjct: 65 PRDAKEVFVANPAVANAVVRSSRKLFLIGIENGATSIFVMDAEGRQIAALDVTIARDINV 124 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L +L++ + +I V+ V D++VL G V + ++Q+A++++ ++ Sbjct: 125 LRQSLQQSLPGRHIDVKAVGDSLVLSGGVSSASEAQQAIDIANA--FVGIAGGAGGAARG 182 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------SKSFAADF 234 V+N L I +DQV ++VT+ EV R ++KQ G + S+ P + + Sbjct: 183 AVINNLTIRNKDQVMIRVTVVEVARSVIKQFGISTTGNWSALNPLDSTGNFLTNNTGFPL 242 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G F G + FS + L A E+A R LAEPTLTAISG++A FT+GG+ Sbjct: 243 TGAFTPSGNALTASVRSGGFSLQATLRAFEQAGVSRILAEPTLTAISGEAAKFTAGGEIP 302 Query: 295 YKT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----- 344 S S+ YGV L FTP VL+ RI +R+ T+V+E + Sbjct: 303 VPANCSVGAVGSACTISLVYKPYGVSLSFTPVVLAENRISIRVATDVTELDTQNSFSYNL 362 Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P+ R R ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ Sbjct: 363 NGRVVPVPATRRRNSETTVELASGATMMTAGLIQQQNKGTINGLPGLMNLPILGALFRSR 422 Query: 402 RFNREETEIFIAATP 416 F R+E E+ I TP Sbjct: 423 DFQRDENELMILVTP 437 >gi|323700359|ref|ZP_08112271.1| type II and III secretion system protein [Desulfovibrio sp. ND132] gi|323460291|gb|EGB16156.1| type II and III secretion system protein [Desulfovibrio desulfuricans ND132] Length = 476 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 114/427 (26%), Positives = 199/427 (46%), Gaps = 25/427 (5%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A V V+ K IS+ + + ++ +V + + T +VV SP +YL Sbjct: 23 ATVAWARVVKSDKPDMISMIIGESTVITTDQNVSRITLGSDTVCSIVVISPTQIYLTANE 82 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVR 152 +G + L D + DI ++ D L+ + + N +RV +++ L G V Sbjct: 83 IGSTTLTLWTGD-RVSEIYDIAVDPDTTRLKRMIYELLPQENNVRVLTSGNSITLSGQVS 141 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + L+E + +V+NLL++ G QV L+V +AE+ R + K+ Sbjct: 142 NATSLSSVLSLAEAA------------APGRVVNLLSVDGIQQVMLEVRVAEMSRSVTKR 189 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKF------VSEGGDFSVKGVLDRFSFETVLHALERA 266 +G + GS+ +++ + + V + ++ AL+ Sbjct: 190 LGLNFAAIGSNFSIYSIINNLTSYNNEDNVFELTDNINLAGSYVSGNTTIHGMVDALKSN 249 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +R LAEP LT +SG++A F GG+ S+ G + +G+ L FT TV+S G Sbjct: 250 GLVRMLAEPNLTCVSGEAAEFLVGGEVPIPM-PSALGTVGIDYKPFGIALKFTATVMSSG 308 Query: 327 RIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 RI L++ EVSE + V+ ++P+ R+A+T VEL G + V+AGL+ D +++ Sbjct: 309 RINLQVNPEVSELDYSKALSVSGYEIPTISTRRANTVVELGDGQSFVIAGLISDSLKENA 368 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 P L ++P+LG+LF + FN +TE+ + T L KPV M + P D + DD + Sbjct: 369 HKFPGLGEVPVLGSLFSSKDFNSNKTELVVLVTAHLAKPVDMATQTLPTDGFREPDDREF 428 Query: 443 FFFNRVN 449 + F + Sbjct: 429 YLFGLLE 435 >gi|254293214|ref|YP_003059237.1| type II and III secretion system protein [Hirschia baltica ATCC 49814] gi|254041745|gb|ACT58540.1| type II and III secretion system protein [Hirschia baltica ATCC 49814] Length = 535 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 151/537 (28%), Positives = 256/537 (47%), Gaps = 78/537 (14%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG---KGKKISIGLNKVIIL 60 +++ + + + S + + I + E G + +++ NK +L Sbjct: 9 IKKILLSACVAAIGFGSESAFAQNSLAGGVSETIRVRVTEPGQSATSRTLNLSQNKTAVL 68 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-LIERD 119 + DV D+LV++P ADV+ S R + + K G++++I GK++L+LD+ + + Sbjct: 69 EFEEDVDDILVANPEIADVLARSKRRIAVLAKGKGESSIIFTNAQGKEILSLDVIVAGQG 128 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 ++ L+ + +++ S I+ E V+ +VL G ++ D+ A++L++ F+ Sbjct: 129 VSELQALIEQYVPRSAIKAEFVNGAIVLAGKSPSLSDADMAIQLAQQFVVDD-------- 180 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------------- 222 V+N+++I G+DQV LKV I E++R ++KQ+G S + + Sbjct: 181 --SPVINMISIEGKDQVLLKVRIVEMQRSVIKQLGVNLSGSMNIGELANKSVQTAYDAVT 238 Query: 223 ---------------------------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + S + + G + G + S Sbjct: 239 GEVLLDAAGEALQVLAPAAPWDQSVSFGTSNSLGISGESLGGMSLSPSYNNYVGDKLQSS 298 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + LER +RTLAEP LTA+SG+SA F +GG+ + S G + +GV Sbjct: 299 AGFSVDMLERIGLVRTLAEPNLTALSGESAKFLAGGEFPVPSEVDSDGEVVLEFKPFGVG 358 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------------------AGDMPSYRVRKA 356 L FTP VLS RI +RI TEVSE A +P+ +VR+A Sbjct: 359 LGFTPVVLSESRISMRISTEVSELTSTGGYQIGGTTYVDGAGNTVSTPAVVIPALKVRRA 418 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DTTVE+PSGG++V+AGL+++ Q + +P + +P++G+LFR+ F ETE+ + TP Sbjct: 419 DTTVEMPSGGSLVIAGLIQEQTSQAMDKVPGVGNLPVIGSLFRSREFQNNETELVVIVTP 478 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 +LV P + L PDD Y DAKA FF ++N++Y + A E G GFI+ Sbjct: 479 YLVDPTDPKKLRSPDDGYVAAKDAKAIFFGKMNEVYAVEGADVEETAGING-AGFIF 534 >gi|260778162|ref|ZP_05887055.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] gi|260606175|gb|EEX32460.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] Length = 469 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 107/454 (23%), Positives = 199/454 (43%), Gaps = 35/454 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + +N+ ++++ + + +S+ AD + + +FG G A + ++ Sbjct: 24 ANALEVNINEAKMIRLSEKAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITVLNEQE 83 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + + I + D L+ ++ D+++ E + + L G V T + V +++ Sbjct: 84 RVIYSNKIRVVHDTQELDELIKAQFPDASVNSESLGGKLWLKGSVPTPVMAHSIVNVAKG 143 Query: 167 FLSQSGRNQYANSS--------------------SKKVMNLLNIAGEDQVTLKVTIAEVR 206 +LS Q +N++ +++N L + QV +++ IAEV Sbjct: 144 YLSPIVAPQESNNNDSSKSSNSSESNSENQQNSNGDELINQLVVTMPTQVNIRIRIAEVS 203 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 R++ ++G + ++ ++ F + + + + ++ AL Sbjct: 204 RNVSNKLGIKWGSLVTNGSTVENTVGSFLYNKPWDVSSW------GKPNLSALVDALAST 257 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP LTA+SG+ A+F GG+ + T V +GV L+F P VL P Sbjct: 258 GDMSILAEPNLTAMSGEEANFLVGGEVPIPLIQGDTAT--VEYKPFGVNLNFKPVVLGPD 315 Query: 327 RIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 RI L+++ EVS + N +PS+ R+A TT+EL SG + L GLL+ + Sbjct: 316 RISLKVEPEVSSVSVDNQAVLNGNVLPSFTSRRASTTIELASGQSFALGGLLQSSEIEQL 375 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + +P + IPILG LFR++ + R ETE+ I AT +LV+P +L P D + D + Sbjct: 376 QKLPGMGDIPILGGLFRSNEYQRRETELIIIATAYLVEPTRSDNLPIPTDALIPQSDLER 435 Query: 443 FFFNRVNKIYGPKEASEVE---GQNYKGAIGFIY 473 G + G GF Y Sbjct: 436 LLALPDEDFVGTSGKATYTDNRKPRLLGDNGFYY 469 >gi|327189767|gb|EGE56911.1| cpaC pilus assembly Q protein [Rhizobium etli CNPAF512] Length = 495 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 127/490 (25%), Positives = 219/490 (44%), Gaps = 34/490 (6%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 +R+ T L ++ + L P A+ S + +++ N+ + L Sbjct: 6 RRSARTKSLAALAATFSACVILGPGFAGYASAQEKSVTLGKSVQHVTLPPNETLTLNTGQ 65 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 D+++ DVV S +++++ GK G N+ + G D + +DI + D + + Sbjct: 66 PFGDLVIGSADMIDVVPLSDKSLFVRGKKTGATNISVYGDDKSLLGVIDIRVASDFSEVS 125 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 +R + +RV +D + L G+VR + QR +E+++++ S + V Sbjct: 126 AAIRSAAPTARVRVFNSNDRIRLVGVVRDSIELQRVLEIAQSY------------SEQPV 173 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------------ 232 +N L ++ QV L+V I E R + +G S G+++ K+ + Sbjct: 174 LNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGYGNNNRIGKATTSQGITVDDGNLAR 233 Query: 233 ------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + G + + + V++ALE+ +R LA+P L A+SG +AS Sbjct: 234 TLLDPKGAATGMLPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMSGSTAS 293 Query: 287 FTSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 F +GG+ T + +T AT +GV L F P VL G I L I+ EVSE +N Sbjct: 294 FHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGVINLEIEPEVSELDPSIN 353 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P + R A TTV L G + LAGLL+ + + +P L +IP+LGALFR++ F Sbjct: 354 VNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQMPGLGQIPVLGALFRSTSFQ 413 Query: 405 REETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 ++E+++ I TP +V+P DL P D +D + F V ++ G+ Sbjct: 414 KKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALG-VMEVDKDMLRRFRNGE 472 Query: 464 NYKGAIGFIY 473 G G Sbjct: 473 GVTGPYGHRL 482 >gi|94497254|ref|ZP_01303826.1| type II and III secretion system protein [Sphingomonas sp. SKA58] gi|94423359|gb|EAT08388.1| type II and III secretion system protein [Sphingomonas sp. SKA58] Length = 486 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 125/464 (26%), Positives = 210/464 (45%), Gaps = 28/464 (6%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L ++ + +N + + + + + ++ +P + DV+++DP Sbjct: 4 LAGPAIAIGLAVACAAVPTSALNAATSSMQDNAIL-LSVGGSRVINLPAKMSDVVIADPE 62 Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 DV V S +YL K G+ V +GK + + + + +I ++ LR + +N Sbjct: 63 VVDVHVRSQNQLYLIAKKAGETTVFATAPNGKVLFSGTVRVGNNITSIDDMLRIAMPGAN 122 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 I V ++ V+L G ++ +D+ L++ F+ + V++ L +A Q Sbjct: 123 IAVNTMNGMVLLTGTIQAPEDAAEVERLTQAFVGKDVT----------VVSRLRMATPLQ 172 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------------GKFVS 240 V L+V IAEV +D+ +IG + S G + Sbjct: 173 VMLQVKIAEVAKDVGHKIGTNFASVDRSGGKVAGNVGGGLRDFAQYNADTNSWDFTNPID 232 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + L E + TLA+P LTA+SG++ASF +GG++ Y + Sbjct: 233 GGYSLGGVARILGMDIAGALDLAESSGLASTLAQPNLTALSGETASFLAGGEYPYTVSNG 292 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G S+ YGV L FTPTVL+ GRI LR++ VS +NA ++P+ + R A+TTV Sbjct: 293 LQG-NSIEFKQYGVQLAFTPTVLADGRISLRVRPTVSSLDFSINA-NVPALKSRTAETTV 350 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL SG ++AGLL ++ +P L +PILG+LF++ +F R ETE+ I TP+LVK Sbjct: 351 ELGSGQAFMIAGLLNNEASNNVNKVPGLGNLPILGSLFKSRQFQRNETELVIVVTPYLVK 410 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 P+ D+ P D + D + F R + Sbjct: 411 PMNASDVRLPTDGFRNADLGEGLFLQRSHSGTSGARRPMPSRAP 454 >gi|13471032|ref|NP_102601.1| secretory protein [Mesorhizobium loti MAFF303099] gi|14021776|dbj|BAB48387.1| probable secretory protein [Mesorhizobium loti MAFF303099] Length = 461 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 124/462 (26%), Positives = 214/462 (46%), Gaps = 23/462 (4%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M+ L + + LP + +A+ ++ +S + I + K + +++ Sbjct: 1 MAAALVAGA--MLALPGVAKADNDIVYVSATKNA---SIKVAKGKPKTIVTNAAFYQIVI 55 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 DP A+V + ++ Y+ G N+G + L + + +DI + D L T+R + Sbjct: 56 GDPEIANVNPLTDKSFYVLGNNLGTTGIALFDEKKQLVGTVDIEVTLDTDQLASTIRASV 115 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 D+ I+V + VVL G +++A +++ F +++V+N +NI+ Sbjct: 116 PDAKIKVGSANGRVVLSGEADDAVAAEKANKIATRFSG-----------TEEVINSVNIS 164 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV L V E+ R + +G ++S + + + D G + G+ + + Sbjct: 165 SSQQVQLNVRFVEINRQAGQDLGAKYSANFAYGFGGRDVSLDPGTVPAAGTGEIIGRLLS 224 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + S + + ALE R LAEP L A SG++ASF +GG+ VS G SV+ Sbjct: 225 NGVSIDIAIKALEERGLARRLAEPNLIARSGETASFLAGGEFPIP-VSEDNGKISVSYKK 283 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGT 367 YGV L FTPTVL G + L I EVS + +P + VR+A T+V+L +G + Sbjct: 284 YGVSLDFTPTVLKDGLVSLDIAPEVSSIDASSSYNIGTISVPGFIVRRAKTSVDLKNGQS 343 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RD 426 ++AGLL+ IP L K+P+LGALF + + R ET++ I TP+LVKPV + Sbjct: 344 FMIAGLLQSQNDITTSRIPGLGKMPVLGALFSSKSYQRRETDLVIIVTPYLVKPVDPSKK 403 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 + P D + +F N ++ + + A Sbjct: 404 MVEPTDGTRPASNVD-YFLNNTEEVKASDAGRALALADGSAA 444 >gi|167899813|ref|ZP_02487214.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 7894] Length = 473 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 36 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 95 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 96 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 154 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 155 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 214 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 215 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 270 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ E Sbjct: 271 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 330 Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 331 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 390 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 391 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 450 Query: 447 RVNKIYGPKEAS 458 + G ++ Sbjct: 451 NMEGRGGLRQHG 462 >gi|145219384|ref|YP_001130093.1| type II and III secretion system protein [Prosthecochloris vibrioformis DSM 265] gi|145205548|gb|ABP36591.1| type II and III secretion system protein [Chlorobium phaeovibrioides DSM 265] Length = 472 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 124/496 (25%), Positives = 208/496 (41%), Gaps = 69/496 (13%) Query: 1 MRYLQRTFFTM--MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI 58 M YL R+ M + L S P P + + + Sbjct: 5 MSYLMRSGCRMSAFAALLSSIAPVAGLAAPSTYF-------------------VPVGESR 45 Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 + ++ ++ V V +P AD ++ + +YL GK G N+IL GK + + + R Sbjct: 46 VYRLEQPIKRVAVGNPEVADYIMLNSSELYLLGKKTGATNLILWNQQGK-FTSTLLQVSR 104 Query: 119 DIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN--- 174 + ++ LR + + I++ + +VL G V ++ A L + +L + Sbjct: 105 NSYPIKQLLRTALPEESEIQIFSSGEALVLAGSVSNRLAAETAYRLVKAYLGGKVPDVNP 164 Query: 175 -------------------------------QYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 +++ V+NLL + QV L+V IA Sbjct: 165 ESSLAKTTSASAASASIAGTTNGSSAVPVQASTQSTAPAGVVNLLTVRDTQQVRLEVRIA 224 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 EV + L+ +G + + FVS + E + A Sbjct: 225 EVSKTYLQTLGIGWQQ------GTGNTQGSLMTGFVSNATLNVLLQTKSNPGNELSMDAE 278 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + I+ LAEPTL A+SG+ F GG+ TV+S+ V YGV L FTPTVL Sbjct: 279 RKEGVIKILAEPTLVAMSGEEGYFLVGGKVFTPTVTSNGAIDYVERT-YGVGLRFTPTVL 337 Query: 324 SPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 GRI L++ EVSEP V + +P ++ A +TV++ G +V+ GLL+D++ Sbjct: 338 DSGRISLKVAPEVSEPLKEAVTAGTSTPLPGFKTSFASSTVQMNEGENLVIGGLLRDNLT 397 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 ++ +PLLS IPILG+LFR++ + E TE+ + P L+K + P D ++ Sbjct: 398 EVVRAVPLLSDIPILGSLFRHTEKSSETTELMVIIRPTLIKA-STTAQELPTDKFAPPSS 456 Query: 440 AKAFFFNRVNKIYGPK 455 ++ F ++ G K Sbjct: 457 SELFLEGKLQGSRGSK 472 >gi|299067807|emb|CBJ39018.1| pilus assembly secretion protein [Ralstonia solanacearum CMR15] Length = 635 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 117/498 (23%), Positives = 223/498 (44%), Gaps = 55/498 (11%) Query: 17 FSSNPSVAKLPPIKEANAAVINIS-----DVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 ++N + A+ A N + ++++ + K ++Q+ V+ V Sbjct: 60 MAANGPIQLTIGSARADTARENTVKGPNCTGPMRDHSEVTVPVGKSTMVQLSEPVRSRTV 119 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 +P ++ SP+T+YL G++VG N+I+ G G +D+ + D L+ TL + Sbjct: 120 GNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQATLHALM 178 Query: 132 ADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK-------- 182 ++ +RV +D++VL G V +Q+ ++++ F+ + R + + Sbjct: 179 PEASRVRVSAAADSLVLGGTVSDSVQAQKIMDIANAFVMRETRGPAQSGQAGTMGMQGMT 238 Query: 183 -----------------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++N++++ QV L+V +AEV + ++ Q+G ++ Sbjct: 239 AMSTGNAATASSGSGSGEAVRNPRIINMMSVEAPQQVMLEVKVAEVSKTLINQMGAALNL 298 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 +G S+ F+S D ++ F+ L A + ++ LAEP L A Sbjct: 299 ----NGSFGSWTFGALANFLSGAPDIFSVDKANKLPFQLKLDAQKGDGLVKVLAEPNLMA 354 Query: 280 ISGQSASFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ ASF +GG+ S T + + +GV L FTPTVL GRI L++ EV Sbjct: 355 ISGQEASFLAGGKVYIPVPQSFGSGTTSILLQEETFGVGLRFTPTVLENGRINLKVAPEV 414 Query: 337 SEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE +P R+A TT+++ G + + GL+K +I + IP Sbjct: 415 SELSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHDGQSFAIGGLIKSNITGSLKAIPG 474 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P++GAL R++ F +++TE+ TP LVKP+ + P D + + + + Sbjct: 475 VGELPVIGALARSTSFQQDQTELLFVVTPHLVKPL-PANYPMPTDSFGPVNQGEVYLNGN 533 Query: 448 VNKIYGPKEASEVEGQNY 465 + + A ++ Sbjct: 534 MEGHPAQRPAPASTQGSF 551 >gi|83716099|ref|YP_440456.1| type II and III secretion system protein [Burkholderia thailandensis E264] gi|83649924|gb|ABC33988.1| Bacterial type II and III secretion system protein domain protein [Burkholderia thailandensis E264] Length = 679 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 124/433 (28%), Positives = 216/433 (49%), Gaps = 21/433 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 +G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 94 GAMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212 Query: 161 VELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 V +++ + ++ V+N+L + QV L+V +AEV + ++ Q+G Sbjct: 213 VAIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAV 272 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 ++ G + + ++ G+ ++ + A ++ LAEP L Sbjct: 273 NLQGGFGSWTGALVTSL----LTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRL 328 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334 ISGQ A+F +GG+ SS TS ++GV L FTPTVLS GRI L++ Sbjct: 329 VTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAP 388 Query: 335 EVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 EVSE +P R+A TTV++ G T + GL+KD+ Q + + Sbjct: 389 EVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKAL 448 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A + Sbjct: 449 PGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYAT 508 Query: 446 NRVNKIYGPKEAS 458 + G ++ Sbjct: 509 GNMEGRGGLRQHG 521 >gi|103486617|ref|YP_616178.1| type II and III secretion system protein [Sphingopyxis alaskensis RB2256] gi|98976694|gb|ABF52845.1| type II and III secretion system protein [Sphingopyxis alaskensis RB2256] Length = 493 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 127/481 (26%), Positives = 217/481 (45%), Gaps = 34/481 (7%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 + ++ + A + + I + + + ++ +P + DV V Sbjct: 7 FKAAALARTLAIGLVAATLIAAPSRPVAAQAVQNASSSIDLSVGRGRLISLPAAMSDVFV 66 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 +D ADV V S R +Y+F K G+ ++ G+ + + + +I ++ L + Sbjct: 67 ADDKVADVQVRSSRQLYVFAKAPGETSIYATDASGRVVFSTVARVGNNIETIDQMLSLAM 126 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 +++I ++ V+L G VR+ D+ A L + F+ KV++ L A Sbjct: 127 PEASIAANTMNGFVLLTGTVRSPDDAAEAERLVQAFVGDQT----------KVLSRLRTA 176 Query: 192 GEDQVTLKVTIAEVRRDILKQI---------------GFQHSITGSSSGPSKSFAADFGG 236 QV L+V IAEV R ++K++ GF + G + + A+ Sbjct: 177 TPLQVNLQVRIAEVNRSLVKELSGNLLTRDTDGPLGNGFLGGVFGGRQAGTITTDANGNT 236 Query: 237 ----KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + G L L ER+ + TLA+P LTAISG++A F +GG+ Sbjct: 237 IYSITTPPGTRSLAGAGRLFGLDLIASLDIGERSGLVATLAQPNLTAISGETADFLAGGE 296 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDM 348 + + T++ YGV L +TPTVLS GRI LR++ EVSE + Sbjct: 297 FPVP-IPGNFAGTTIEYRKYGVSLAYTPTVLSNGRISLRVRPEVSELSTEGAIEMQGFQI 355 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ +R+A+TTVEL SG + ++AGLL + + +P L +P+LG LF++ F R ET Sbjct: 356 PALTIRRAETTVELGSGESFMIAGLLNNRSIGAIDKMPGLGDVPLLGTLFKSDSFRRGET 415 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 E+ I TP+LV+PV+ D+ P D + DD + N+ + + + + G Sbjct: 416 ELVIVVTPYLVEPVSANDIKLPTDAFRDADDLQRLLLNQTSDGVTGGDRPKPRLDSNVGD 475 Query: 469 I 469 Sbjct: 476 A 476 >gi|241662165|ref|YP_002980525.1| type II and III secretion system protein [Ralstonia pickettii 12D] gi|240864192|gb|ACS61853.1| type II and III secretion system protein [Ralstonia pickettii 12D] Length = 603 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 114/488 (23%), Positives = 214/488 (43%), Gaps = 40/488 (8%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 M + +A + ++++ + K ++Q+P V+ Sbjct: 59 MAASGPIQLTIGSPATAEANRDSAGKGPNCTGPMRSHSEVTVPVGKSTMVQLPEPVRSRT 118 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V +P ++ SP+T+Y+ G VG N+I+ G G +D+ + D L+ TLR+ Sbjct: 119 VGNPNVVQAMLVSPQTLYVLGLEVGSTNMIVQGRSGSC-SVVDVAVGADPGGLQSTLRKL 177 Query: 131 IADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------------------ 171 + ++ N++V +D++VL G V +Q+ V+++ F+ + Sbjct: 178 MPEARNVQVSAAADSLVLGGSVSDSVQAQKVVDIANAFVMRRTRGPNEGEQNATGQGGQQ 237 Query: 172 --GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 A S +++N++ + QV L+V +AEV + ++ Q+G + G+ S Sbjct: 238 LHTAGPGAPLRSPRIINMMTVEAPQQVMLEVKVAEVSKTLIDQMGAAFNANGAFGSWSFG 297 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 A+ F+S D + + L A + ++ LAEP+L AISGQ ASF + Sbjct: 298 AIAN----FLSGSSDIVNFSKANHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLA 353 Query: 290 GGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--- 342 GG+ + + +GV L FTPTV+ GRI L++ EVSE Sbjct: 354 GGKVFIPVAQGAAANGVATIVLQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVA 413 Query: 343 ------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 N +P R+A TT+++ G + + GL+K++I + +P + ++PI+G+ Sbjct: 414 VTAPNSNNTSILPLITTRRASTTLQVHDGQSFAIGGLIKNNITGSLKALPGIGELPIIGS 473 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 L R++ F +++TE+ TP LVKP+ P D + + + + + Sbjct: 474 LARSTSFQQDQTELLFVVTPRLVKPL-PAQYPLPTDSFGTINRGELYLNGNMEGHVQAPA 532 Query: 457 ASEVEGQN 464 + Sbjct: 533 SQPTAVAA 540 >gi|329847253|ref|ZP_08262281.1| bacterial type II and III secretion system family protein [Asticcacaulis biprosthecum C19] gi|328842316|gb|EGF91885.1| bacterial type II and III secretion system family protein [Asticcacaulis biprosthecum C19] Length = 535 Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 147/538 (27%), Positives = 239/538 (44%), Gaps = 77/538 (14%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEA--------NAAVINISDVEIGKGKKISIGLN 55 + L + + A + + + + + + + Sbjct: 8 SRALLPATALAGLMTLLATGAHATGEPKPYNSLKSGGGGGMAVQTQTSQARVQVLRLPKG 67 Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 + ++ +P D DV VS+P AD V+ +PR +++ G GQ++ I G+Q+LNL I Sbjct: 68 RSAVVDLPTDAADVFVSNPAVADAVLRTPRRIFVLGVEGGQSDAIFFDAQGRQILNLSIR 127 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 +E L T+ R S + V+ ++ VVL G+ + + + L+ +++++ Sbjct: 128 VEAATDELTDTVHRLFPTSKVEVQSLNGRVVLSGLAQNNAQADQIARLAASYVTK----- 182 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 + V+NL++IAG+DQVTLKV + EV+R +KQ+G I ++ S S+ Sbjct: 183 -----PEDVINLMSIAGKDQVTLKVRVIEVQRSAIKQLGLSSDIVYNNGSQSYSYGRGNT 237 Query: 236 GKFVS------------------------------------------------EGGDFSV 247 + Sbjct: 238 YGTNGTSYGGRGLCYGQNNVVTNNFTDSNSVTDQTAVTLEDTPVVNRTLTATIGSAVNTT 297 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 L S T L A ER IRTLAEP LTA+SG++A F +GG+ G +V Sbjct: 298 WRTLTGSSNATCLQAFERVGLIRTLAEPNLTAVSGEAAKFLAGGEFPVPVAEDDAGRITV 357 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAGDMPSYRVRKADTTVE 361 +GV L FTP VLS GRI ++I TEVSE + +P VR+A+TTVE Sbjct: 358 EFKPFGVGLGFTPVVLSEGRISMKISTEVSEITNVGAFTSNGSNLTIPGLSVRRAETTVE 417 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + SGG++++AGLL+ +Q + +P ++ +PILG+LFR+ F E+TE+ + TP++V P Sbjct: 418 MQSGGSLMIAGLLQSKYKQSIDSLPGMTSLPILGSLFRSRDFLNEDTELVVMVTPYIVDP 477 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAI----GFIYK 474 V L P D+ DD F R+NK + G A+ V G G++ + Sbjct: 478 VHPDQLQTPADNLEFADDMSTVFMGRLNKVVDGDAVAAGVPASGPTGPYVAPIGYVIE 535 >gi|87199534|ref|YP_496791.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87135215|gb|ABD25957.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 517 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 133/476 (27%), Positives = 209/476 (43%), Gaps = 54/476 (11%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 NA E + + +NK ++ + LV + ADV+ + R++Y+ GK Sbjct: 24 NATRAQGITAENLHAGTLEVPVNKSQVVSTDRTIAKALVGNDDIADVLPVTTRSIYVLGK 83 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 +G ++ L G+ + +D+ + D+ L L+ F+ + I + +D +VL G+V Sbjct: 84 KMGTTSLTLYDATGRVLSIMDVAVGPDVEGLRSQLKTFVPNDKIDARLSNDAIVLSGLVN 143 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 RAV+L+ T+ KV+NL+++ QV L+V AEV R Sbjct: 144 DPGAIDRAVQLARTYAG------------DKVVNLISLGSSQQVMLEVKFAEVNRTAGFD 191 Query: 213 IGFQHSITGSSS------------GPSKSFAADFGGKFVSEG----------------GD 244 +G + + G + + + GG S G Sbjct: 192 VGVSGFASKGTFESAIGKGAQLVPGADVTVSGNSGGVSTSTTIPGASILKLSSITGSFGI 251 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F +D + VL+ALE +TLA+PTL A+SG+ ASF +GG+ V S T Sbjct: 252 FRKSFSIDGLGIDAVLNALETKGMAKTLAQPTLLALSGERASFLAGGEFPVPVVQSGTTG 311 Query: 305 T--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYR 352 T +V +GV L FTPTVL I L ++ EVS V + +P R Sbjct: 312 TGNGNGGAITVEFKPFGVSLGFTPTVLGDKTINLLVEPEVSAIDPTASLTVGSITIPGLR 371 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+A TT+EL G + +AGLL+ D + + +PLL +PI+G+LFR+S F++ ETE+ I Sbjct: 372 TRRASTTLELRDGESFAIAGLLQKDFKTSVQQLPLLGSLPIIGSLFRSSAFSKGETELLI 431 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 TP LV P+ + P D + A F +G K A Sbjct: 432 VVTPRLVSPIKPEQVRLPTDAVTDPSAASTIFLG--EPSFGKKLAPTKPQDGSAAP 485 >gi|153006805|ref|YP_001381130.1| type II and III secretion system protein [Anaeromyxobacter sp. Fw109-5] gi|152030378|gb|ABS28146.1| type II and III secretion system protein [Anaeromyxobacter sp. Fw109-5] Length = 490 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 128/503 (25%), Positives = 215/503 (42%), Gaps = 55/503 (10%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 L + + ++A A D E+G +++S+ + +L + + Sbjct: 2 IPHRARALLVTLLVAAGPAVAQEQAQATPALRIDREMGAAREMSLEAGQNRLLIISEQIA 61 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 + V++P AD+ V +P + L K VG ++ L D + + + + + R++ L + Sbjct: 62 RIAVANPDVADLKVVTPTQVLLTAKGVGTTDLTLWNRDNQPL-VIALQVGRNLEALRTQV 120 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 ++ N+++ D VVL G V ++ +R E++ ++KV NL Sbjct: 121 KQLFPGENVKITASGDLVVLSGEVTDVRLPERVAEVAR-------------LHAEKVANL 167 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFAADFGGK 237 + ++G QV L+V AEV R L+++G S+ F Sbjct: 168 IQVSGVQQVQLQVRFAEVARGGLRELGVNLFHKSDDFRTVGGLFSNRTLPGEFLNTNQNP 227 Query: 238 FVSEGGDFSVKGVL---------------------DRFSFETVLHALERATAIRTLAEPT 276 + G + G D F F +L LE+ ++LAEPT Sbjct: 228 SIPGTGPRGLAGNGFPPDVPAPAFQNAFSVFLSRMDDFPFSVMLSLLEQNNLAKSLAEPT 287 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L A+SGQ A F +GG+ SS G TSV +G+ L FTPTV+ I L ++TEV Sbjct: 288 LVALSGQGARFLAGGELPIPLA-SSFGQTSVEWKRFGIQLEFTPTVIGD-AIHLTMKTEV 345 Query: 337 SEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 S+ + +P R+++T++ L G + +AGL+ D I+ +P + IP Sbjct: 346 SDIDPSLAVTIAGTSVPGLTSRQSETSIRLADGQSFAIAGLVSDRIRSQVAKVPFIGSIP 405 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFNRVNK 450 ILGALFR+ F R+E+E+ + T LVKPVA +L P + + D + K Sbjct: 406 ILGALFRSQAFQRDESELIVVVTAHLVKPVAPHELPPLPTEYEMNDPGDLPFYLLGSQGK 465 Query: 451 IY--GPKEASEVEGQNYKGAIGF 471 K + G GF Sbjct: 466 SAQIAEKRQPASPERGPSGQSGF 488 >gi|167566934|ref|ZP_02359850.1| outer membrane protein [Burkholderia oklahomensis EO147] Length = 550 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 124/429 (28%), Positives = 216/429 (50%), Gaps = 22/429 (5%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 92 GEMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIV 151 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V Q +Q+A Sbjct: 152 QGRSGAC-QIIDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAGNVSDAQAAQQA 210 Query: 161 VELSETFLSQSGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 V +++ + ++ A + + V+N+L + QV L+V +AEV + ++ Q+G Sbjct: 211 VAIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMGSA 270 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 +I G + + G+ ++ F+ L A ++ LAEP Sbjct: 271 INIQGGFGSWTGMLVSSLLAGV----GNGIAASKSNKLPFKAALDAQNTDQPVKILAEPR 326 Query: 277 LTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 L ISGQ A+F +GG+ + ++ + T ++ ++GV L FTPTVLS GRI L++ Sbjct: 327 LVTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLKVA 386 Query: 334 TEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 EVSE +P R+A TTV++ G T + GL+KD+ Q Sbjct: 387 PEVSELSPTGVTLSATNVSGVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLRA 446 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +P + +IP+LGALFR++ F ++ TE+ TP LVKP+ D+ P D ++ ++ + Sbjct: 447 LPGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEVDVYA 506 Query: 445 FNRVNKIYG 453 + G Sbjct: 507 TGNMEGRGG 515 >gi|17545374|ref|NP_518776.1| outer membrane channel protein [Ralstonia solanacearum GMI1000] gi|17427666|emb|CAD14185.1| probable pilus assembly protein, secretin cpac [Ralstonia solanacearum GMI1000] Length = 634 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 115/496 (23%), Positives = 222/496 (44%), Gaps = 53/496 (10%) Query: 17 FSSNPSVAKLPPIKEANAAVINIS-----DVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 ++N + A+ A N + ++++ + K ++Q+ V+ V Sbjct: 60 MAANGPIQLTIGSARADTARENTVKGPNCTGPMRDHSEVTVPVGKSTMVQLTEPVRSRTV 119 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 +P ++ SP+T+YL G++VG N+I+ G G +D+ + D L+ TL + Sbjct: 120 GNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQATLHALM 178 Query: 132 ADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK-------- 182 ++ +RV +D++VL G V +Q+ ++++ F+ + R + + Sbjct: 179 PEASRVRVSAAADSLVLGGTVSDSVQAQKIIDIANAFVMRETRGPAQSGQTGTMGMQGMT 238 Query: 183 ---------------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +++N++++ QV L+V +AEV + ++ Q+G ++ Sbjct: 239 AMSTGNAATASSGSGEAVRNPRIINMMSVEAPQQVMLEVKVAEVSKTLINQMGAALNL-- 296 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 +G S+ F+S D ++ F+ + A + ++ LAEP L AIS Sbjct: 297 --NGSFGSWTFGALANFLSGAPDIFSADKANKLPFQLRVDAQKGDGLVKVLAEPNLMAIS 354 Query: 282 GQSASFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GQ ASF +GG+ S T + +GV L FTPTVL GRI L++ EVSE Sbjct: 355 GQEASFLAGGKVYIPVPQSFGTGTTTILLQEETFGVGLRFTPTVLENGRINLKVAPEVSE 414 Query: 339 PVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 +P R+A TT+++ G + + GL+K ++ + IP + Sbjct: 415 LSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHDGQSFAIGGLIKSNVTGSLKAIPGVG 474 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++P++GAL R++ F +++TE+ TP LVKP+ + P D + + + + + Sbjct: 475 ELPVIGALARSTSFQQDQTELLFVVTPHLVKPL-PANYPMPTDSFGPVNQGEVYLNGNME 533 Query: 450 KIYGPKEASEVEGQNY 465 + A ++ Sbjct: 534 GHPASRPAPAPTQGSF 549 >gi|309780760|ref|ZP_07675501.1| type II and III secretion system protein:Transport-associated [Ralstonia sp. 5_7_47FAA] gi|308920442|gb|EFP66098.1| type II and III secretion system protein:Transport-associated [Ralstonia sp. 5_7_47FAA] Length = 603 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 113/480 (23%), Positives = 212/480 (44%), Gaps = 40/480 (8%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 +A + ++++ + K ++Q+P V+ V +P Sbjct: 67 LTIGSPASAEANRDSAGKGPNCTGPMRSHSEVTVPVGKSTMVQLPEPVRSRTVGNPNVVQ 126 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIR 137 ++ SP+T+Y+ G VG N+I+ G G +D+ + D L+ TLR+ + ++ N++ Sbjct: 127 AMLVSPQTLYVLGLEVGSTNMIVQGRSGSC-SVVDVAVGADPGGLQSTLRKLMPEARNVQ 185 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS--------------------GRNQYA 177 V +D++VL G V +Q+ V+++ F+ + A Sbjct: 186 VSAAADSLVLGGSVSDSVQAQKVVDIANAFVMRRTRGPNEGDQNATGQGGQQLHTAGPGA 245 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 S +++N++ + QV L+V +AEV + ++ Q+G + G+ S A+ Sbjct: 246 PLRSPRIINMMTVEAPQQVMLEVKVAEVSKTLIDQMGAAFNANGAFGSWSFGAIAN---- 301 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F+S D + + L A + ++ LAEP+L AISGQ ASF +GG+ Sbjct: 302 FLSGSSDIVNFSKANHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPV 361 Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VN 344 + + +GV L FTPTV+ GRI L++ EVSE N Sbjct: 362 AQGAAANGVATIVLQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNN 421 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P R+A TT+++ G + + GL+K++I + +P + ++PI+G+L R++ F Sbjct: 422 TSILPLITTRRASTTLQVHDGQSFAIGGLIKNNITGSLKALPGIGELPIIGSLARSTSFQ 481 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 +++TE+ TP LVKP+ P D + + + + + + Sbjct: 482 QDQTELLFVVTPRLVKPL-PAQYPLPTDSFGTINRGELYLNGNMEGHVQAPASQPTAVAA 540 >gi|209546483|ref|YP_002278401.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537727|gb|ACI57661.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 495 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 127/495 (25%), Positives = 218/495 (44%), Gaps = 35/495 (7%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59 M +R S+ ++ S A A V +GK +++++ N + Sbjct: 1 MANGKRRIARTKSLAALAAVFSACVCLGPGFAGCANAQEKSVTLGKSVQRVTLPPNATLT 60 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L D+++ DVV S +++++ GK +G N+ + G D + +D+ + D Sbjct: 61 LNTGQAFGDLVIGSADMIDVVPLSDKSLFIRGKKIGATNISVYGDDKSLLGVIDVRVASD 120 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +R + + V SD + L G+VR + QR +++++++ Sbjct: 121 FSEVAAAIRSAAPSARVIVANSSDRIRLTGIVRDGVELQRVMDIAQSY------------ 168 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---- 235 S + V+N L ++ QV L+V + E R + +G S G++ + + G Sbjct: 169 SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGRGNNGIGKATTSQGLGVDDN 228 Query: 236 --------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + G + + + V++ALE+ +R LA+P L A+S Sbjct: 229 GSLVRTLVDPKGAATGALPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMS 288 Query: 282 GQSASFTSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 G +ASF +GG+ T + +T AT +GV L F P VL G I L I+ EVSE Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGLINLEIEPEVSEL 348 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +N P + R A TTV L G + LAGLL+ + + +P L KIPILGALFR Sbjct: 349 DPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQLPGLGKIPILGALFR 408 Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 ++ F ++E+++ I TP +V+P DL P D +D + F + + Sbjct: 409 STSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALGVLE-VDKDMLRR 467 Query: 459 EVEGQNYKGAIGFIY 473 G+ G G Sbjct: 468 FRNGEGVTGPYGHRL 482 >gi|87312292|ref|ZP_01094390.1| putative outer membrane channel for pilus assembly CpaC [Blastopirellula marina DSM 3645] gi|87284996|gb|EAQ76932.1| putative outer membrane channel for pilus assembly CpaC [Blastopirellula marina DSM 3645] Length = 534 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 123/471 (26%), Positives = 205/471 (43%), Gaps = 27/471 (5%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 M S + ++A + AV N++ +++ + +N I + + Sbjct: 1 MYSYGVACLLIAIATPAANAQDMGAVPNVNFKVDAPNQRLEMMVNSSRIFTLDEKIPKAQ 60 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V++P + SP + + G V L DG + +DI++ D L++ L Sbjct: 61 VNNPDLLRLTPLSPNKIQVSALKPGVTQVNLWNEDG-TIHTIDIIVIGDGRELQLLLETE 119 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 +S+I+V ++ +VVL G V + R V ++E + KV+N + + Sbjct: 120 FPNSSIKVRPLASSVVLSGYVDRPEAVSRIVAMAEDYYP-------------KVINNITV 166 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----------FAADFGGKFVS 240 G QV LKV + EV R L+++G + GS S + + + Sbjct: 167 GGVQQVMLKVKVYEVSRTKLRRLGIDWAAIGSDYFISSTAANVLTPAGVLTSGARDALGA 226 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + F L AL + + AEPTLT ISG+ ASF SGG+ + V+S Sbjct: 227 TGQTVQFGVLGSSTQFFGFLDALRQNNVAKLSAEPTLTTISGRPASFLSGGEVPIQ-VAS 285 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G TS+ YG + F P VL G + L ++ EVSEP V P +R+R DT V Sbjct: 286 GLGTTSIEYKQYGTRVDFVPIVLGNGNLKLEVRPEVSEPDYSVAINGTPGFRLRWVDTAV 345 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 E+ +G + LAGL+++ I+ G+P L+ +P +GA FR + +R E E+ I TP LV Sbjct: 346 EMKAGQSFALAGLIQEKIETETRGLPYLADLPWVGAAFRRNTDSRNEVELLIIVTPELVG 405 Query: 421 PVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 + ++ P + + D + + V P + + G Sbjct: 406 ALNPEEVPCEYPGSNTGITTDCELYGRGYVEVPACPPGGACISEPGMIGPY 456 >gi|329890996|ref|ZP_08269339.1| bacterial type II and III secretion system family protein [Brevundimonas diminuta ATCC 11568] gi|328846297|gb|EGF95861.1| bacterial type II and III secretion system family protein [Brevundimonas diminuta ATCC 11568] Length = 522 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 136/507 (26%), Positives = 248/507 (48%), Gaps = 70/507 (13%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 + A + + +++ + +P D +DV++S+P A+ ++HSPR + Sbjct: 26 AASDGARAQTRAAITAGSAPQMVNLPRGTSFAVDLPADARDVIISNPAVAEAMLHSPRRI 85 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 + G G+ + + + G+ +L L + ++ ++ L+ TL R SN+R E V+D+++L Sbjct: 86 TMIGLAGGETDAVFLDASGRTILALRVRVDAGVSALQDTLARVAPGSNVRAEAVNDSIIL 145 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G+ + +++RA +++ F+ S+ +KVMN++ +AG DQVTLKV + EV+R Sbjct: 146 TGVAASPLEAERAAQVARAFV----------SAPEKVMNMIAVAGSDQVTLKVRVVEVQR 195 Query: 208 DILKQIGFQHSI-------------TGSSSGPSKSFAADFGGKFVSEGG----------- 243 + +KQ+GF ++ G + SF G + Sbjct: 196 NAIKQLGFDTQAVIGRVGDTQWLLGNSATWGVNGSFLGGLAGGIARDTTKNFQMQVPCVG 255 Query: 244 ---------------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + G E +L A ER +RTLAEP Sbjct: 256 PGWPEGAMCPVTVDGSPGDPSNWDTAKPGTGPGSDGLNKGEAMLKAFERVGLVRTLAEPN 315 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 LT+++G++ASF +GG+ G +V YGV L F P VLS GRI L+++ EV Sbjct: 316 LTSVNGEAASFLAGGEFPVPAGRDREGQITVEYKPYGVGLSFRPVVLSEGRISLQVKVEV 375 Query: 337 SEPVI---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE ++ +P VR+++ T+ELPSGG++++AGLL++ +Q + +P Sbjct: 376 SELTPNGGLTIGAGTPSSITLPGLTVRRSENTIELPSGGSMMIAGLLQESTRQAIDALPG 435 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 ++ +P+LG LFR+ + ETE+ + P++V P + + P D + DA+ FF + Sbjct: 436 MTNLPVLGQLFRSRDYVMGETELVVIVEPYIVNPTSPDRMQTPADGLRIAQDAQTIFFGQ 495 Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474 +N++YG + G ++G +G++ + Sbjct: 496 LNQVYGSPAPAAQPGAGWRGPVGYVIE 522 >gi|319782173|ref|YP_004141649.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168061|gb|ADV11599.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 481 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 116/457 (25%), Positives = 195/457 (42%), Gaps = 32/457 (7%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A DV +I + +++ + +QV ++ D++V D AD + RT+Y+ GK Sbjct: 27 DAADRFIDVSTPAVHRIFLPMSQSVTIQVSANLGDIVVGDEKIADAQPMTDRTLYVIGKG 86 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G V L D + + L I + D++ + +R+ S I V V+ V L G V+ Sbjct: 87 AGTTTVNLFSTDKRSLGALQIEVGVDVSDMAQAIRQVAPKSRIEVGSVNGRVRLGGHVKD 146 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + +++ + V+N + + QV L+V + E +R+ + + Sbjct: 147 GATLAAIMAVAQQY------------GPDAVINSVIVDDSQQVNLEVRVLEAKRNTGRDL 194 Query: 214 GFQHSITGSSSGPSKSFAADF----------------GGKFVSEGGDFSVKGVLDRFSFE 257 G + G + + + Sbjct: 195 GVSIKSRNGDGTTRTGTGVAAVDEDGVVLGPGGLLSGLLSNSAPFGALITRVIDSNIKVD 254 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 ++ ALE A+RTLA P LT +SG+ ASF +GG+ G S+ +GV L Sbjct: 255 LIIEALESKGAVRTLANPNLTTLSGEQASFNAGGEVP-IRTLDKDGEISIVYKQFGVNLL 313 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 FTP VL G+I + + EVS+ AGD P + RK T VEL G + + GLL Sbjct: 314 FTPVVLDDGKIHMNLAPEVSDLTGFTTAGD-PIFTNRKLATVVELRDGQSFAVGGLLSSK 372 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSV 436 +L++ +P L ++P++G LFR+S +EETE+ + TP +V+PV L+ P D Sbjct: 373 TTKLQDQVPWLGQVPVIGTLFRSSSNQKEETELVVIVTPHIVRPVKPGEQLATPFDKTRP 432 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 +D + F ++ E G+ G G + Sbjct: 433 ANDPEFFVLGQLEVTKDMVRKYET-GEGVTGPYGHML 468 >gi|217978832|ref|YP_002362979.1| type II and III secretion system protein [Methylocella silvestris BL2] gi|217504208|gb|ACK51617.1| type II and III secretion system protein [Methylocella silvestris BL2] Length = 530 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 133/486 (27%), Positives = 213/486 (43%), Gaps = 38/486 (7%) Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83 L + A + + E + +++++ K ++ +V ADV+ S Sbjct: 42 MGLAETQPAKSQAGSTIQYEPAQVRRVAVTRYKSRTFRMETPFSSAVVGSADIADVLPMS 101 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 R +Y+ GK VG NV + D K + +D+ + DI ++ +R IRV +D Sbjct: 102 DRVIYIQGKRVGTTNVSIFDKDKKLIGVIDLEVTLDIQNIAAKVRSGTDSRGIRVSSNND 161 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 +VL G R D+ RAV ++++ + + + + K V+N +++A QV L+V Sbjct: 162 QIVLSGEARNAVDADRAVSIAKSMV-TTADGKPPDDPGKFVINAMSVAAAQQVLLRVRFV 220 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------------------FGG 236 EV R + IG + + + + GG Sbjct: 221 EVNRIAERDIGVNWFGAANKTQTAGVNTGNGIASQVGQSLTPTPGGIPLFQTLATLVPGG 280 Query: 237 KFVSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + F V + L + + ++ ALE+ R LAEP L A+SG +ASF +GG++ Sbjct: 281 LASTGSLPFGVGLIKLAGGNVDLLISALEKKGQARRLAEPDLIALSGDTASFLAGGEYPV 340 Query: 296 KTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDM 348 +V SS+G T V + YGV L F PTVL+ G I LR+ VSE V+ + Sbjct: 341 PSVQSSSGTTPVITTQYYPYGVQLTFIPTVLANGIINLRLNPSVSELDYKNVVVTAGFAI 400 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS R+A TT+EL G + +AGLL+ D IP L +P+LGALF + + + ET Sbjct: 401 PSITKREARTTIELRDGQSFAIAGLLQSDSTHDVNQIPWLGSVPVLGALFSSKSYQQNET 460 Query: 409 EIFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 ++ + TP LV P A ++ P D +D F R + G G Sbjct: 461 DLVVIVTPHLVAPAAPGQVVATPFDKTLPANDVDFFVMGRPEVRKQYTD-YVTSGGGLTG 519 Query: 468 AIGFIY 473 G I Sbjct: 520 PYGDIM 525 >gi|295690798|ref|YP_003594491.1| type II and III secretion system protein [Caulobacter segnis ATCC 21756] gi|295432701|gb|ADG11873.1| type II and III secretion system protein [Caulobacter segnis ATCC 21756] Length = 564 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 150/521 (28%), Positives = 231/521 (44%), Gaps = 90/521 (17%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 N V + + + K I+++P DV+D+LV+ PT AD V+ R +Y+ G Sbjct: 55 NGQVARVVLTADQTAATLELAKGKSAIVELPADVRDLLVTSPTVADAVLRDRRRVYIVGL 114 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G + G+++L+L I + + + L TL R + D+ I V + D+VVL G VR Sbjct: 115 AEGVTDAAFFDDAGRRILSLSIKVSQPVDQLADTLSRVLPDAKIEVRPIRDSVVLSGTVR 174 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK- 211 + S A ++ ++ KV+N+L+IAG+DQV L+V I EVRR+++K Sbjct: 175 SPAQSDAAARIAAQYVGG----------PDKVLNMLSIAGKDQVMLQVRIVEVRRNVIKQ 224 Query: 212 ----------QIGFQHSITGSSSGPSKSFAADFGG------------------------- 236 Q+G G S S + G Sbjct: 225 LGVDLNAVLGQLGQSQYSFGLSPTYSVNGNLLGGVTGGYKLDTTKQPTLQIPCGNGVGDA 284 Query: 237 --------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 G + ++ A ER +R Sbjct: 285 KCLAVVHGKVYHTGVIDPTTGREIVVGNGDTATISDTAGSTGVNQAKGMIQAFERVGLVR 344 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 TLAEP LTA+SG++ F GG+ T S +TG ++ YGV L +TP V+S GRI L Sbjct: 345 TLAEPNLTAVSGEAGHFLVGGEFPVPTGSDATGKIAIEFKPYGVGLGYTPVVMSGGRISL 404 Query: 331 RIQTEVSEPVI-----------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 +I TEVSE +P VR+A+TTVELPSGG+ ++AGL Sbjct: 405 KISTEVSELSSLGAFTISNSTTSGNTTTTSAPLTVPGLSVRRAETTVELPSGGSFMIAGL 464 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L+ +Q + +P ++ +PILG+LFR+ F ETE+ I TP++V P RDL P D Sbjct: 465 LQQTTKQAIDALPGMTNMPILGSLFRSRDFLNGETELVIIVTPYIVDPAKPRDLQTPADG 524 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 + D R+N++ G+ Y+G +G++ + Sbjct: 525 LRMAGDMSTVLLGRLNQVVKAPP-GANAGRAYQGPVGYVIE 564 >gi|13475294|ref|NP_106858.1| type II secretion system protein [Mesorhizobium loti MAFF303099] gi|14026045|dbj|BAB52644.1| type II secretion system protein [Mesorhizobium loti MAFF303099] Length = 432 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 129/451 (28%), Positives = 205/451 (45%), Gaps = 26/451 (5%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 + + I +S L K + +P + V+DPT AD S T+++F Sbjct: 1 MQDQGAPRAASNSIDGTLNLSSSLGK--TVHLPAPATTIFVADPTIADYQAASNTTIFVF 58 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 GK G+ ++ + G+ + L I++ + I L L + DS+I+V +L G Sbjct: 59 GKKSGRTSLFALDDKGEALAALRIVVTQPIEELRAMLMDQVGDSSIQVSYTPRGAILSGT 118 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + + A ++E +L +V+N + +AG QV L V +AEV R + Sbjct: 119 APNAEVADTAKRVTEQYLGDGA----------QVVNNIKVAGSLQVNLSVRVAEVSRSAM 168 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--SFETVLHALERATA 268 K +G S G + G + G + + + VL AL + Sbjct: 169 KALGVNLSAFGQIDNFRVGLLSGGGTGSGAAQGGGTAGIGFNNGAVNIGAVLDALAKEHI 228 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 LAEP LTA+SG++ASF +GG+ V SV +GV L F PTVL+ RI Sbjct: 229 ASVLAEPNLTAMSGETASFLAGGEFPIP-VLQENKQVSVEFRHFGVSLEFVPTVLNNNRI 287 Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + ++ EVSE + +N +P+ R+ADT VEL SG + + GL++ ++ Sbjct: 288 NIHVKPEVSELSSQGAVQINGISVPAVSTRRADTVVELASGQSFAIGGLIRRNVNNNVSA 347 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAF 443 P L ++PILGALFR+S F +EE+E+ I TP++VKP + +S P D + D Sbjct: 348 FPWLGEMPILGALFRSSSFQKEESELIILVTPYIVKPGSSPNQMSAPTDRMAPALDDP-- 405 Query: 444 FFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 + G A +G GFI + Sbjct: 406 ---PADPPRGRAAARTGAPGAKRGR-GFIIQ 432 >gi|167924333|ref|ZP_02511424.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei BCC215] Length = 438 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 122/428 (28%), Positives = 218/428 (50%), Gaps = 20/428 (4%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ G Sbjct: 1 MRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQG 60 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+AV Sbjct: 61 KSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVA 119 Query: 163 LSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 120 IAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNIQ 179 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G + + ++ G ++ + A ++ LAEP L I Sbjct: 180 GGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVTI 235 Query: 281 SGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EVS Sbjct: 236 SGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEVS 295 Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E N +P R+A TTV++ G T + GL+KD+ Q + +P + Sbjct: 296 ELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPGI 355 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + + Sbjct: 356 GELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGNM 415 Query: 449 NKIYGPKE 456 G ++ Sbjct: 416 EGRGGLRQ 423 >gi|307726375|ref|YP_003909588.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] gi|307586900|gb|ADN60297.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] Length = 616 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 117/466 (25%), Positives = 209/466 (44%), Gaps = 27/466 (5%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 S N + + ++ AA + + + + K ++ V++ + +P Sbjct: 56 MTISMNAAPPQPASAMQSAAARGPACTRTQSDQRTVVVPVGKSTLMPTAEPVRNRTLGNP 115 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 A + SP+T+Y+ G VG N+I+ G G +++++ D L+ +L + + D Sbjct: 116 LVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADSGGLQTSLSQLMPDE 174 Query: 135 -NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS--------GRNQYANSSSKKVM 185 NIRV V+ +VL G V + Q + +A E+++ + + N A + V+ Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARSTLPGASGGANGNGTAAGKTATVL 234 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 N++++ QV L+V +AEV + +L Q+G +I G S + + S Sbjct: 235 NMMSVDSPQQVMLEVKVAEVSKTVLNQLGAAMNIQGGFGSWSGALISSLLAGVSS----I 290 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + F + ++ LAEP L +SGQ A+F +GG+ S+ Sbjct: 291 VDVNKANNRPFNVAIDGQHGDNLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGV 350 Query: 306 SV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRV 353 S ++GV L FTPTVL+ GRI L++ EVSE +P Sbjct: 351 STIILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITT 410 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+A TTV++ G T + GL+K++ + IP + ++P+LGALFR++ + ++ TE+ Sbjct: 411 RRASTTVQMNDGETFAIGGLIKNNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELVFI 470 Query: 414 ATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 TP LVKP+ +L P D ++A + + Sbjct: 471 ITPHLVKPLQTAANLPLPTDRLKTPNEADVYLMGNMEGRDPAGSTK 516 >gi|167584957|ref|ZP_02377345.1| type II and III secretion system protein [Burkholderia ubonensis Bu] Length = 536 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 119/435 (27%), Positives = 212/435 (48%), Gaps = 19/435 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 81 GAVRESTSVSVPLGKSMLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 140 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +L + + +I V +DT+VL G V + Q +Q+A Sbjct: 141 QGKSGACR-IIDVAVGADAGGLQASLGQLMPGERDIHVSTAADTIVLAGNVSSAQAAQQA 199 Query: 161 VELSETFLSQSGRNQYANSSSKK-VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + + G ++ V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 200 AAIAKAYANAGGGGANGDNKGGGTVLNMLTVTAPQQVMLEVKVAEVSKTLINQLGSAFNI 259 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S + ++ S V + F + A ++ LAEP L Sbjct: 260 QGGFGSWSGALVSNLLAGVASG----IVANKANNRPFSVAVDAQNTDNLVKILAEPNLVT 315 Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ S+TG ++ ++GV L F PTVLS GRI L++ EV Sbjct: 316 ISGQEATFLAGGKIFIPVPQSNTGGGTTITLQEEEFGVALRFLPTVLSNGRISLKVAPEV 375 Query: 337 SEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE +P R+A TTV++ G + + GL+KD+ + +P Sbjct: 376 SELSQTGVTLTATNVAGASILPLITTRRASTTVQMADGESFAIGGLIKDNATGSLKAVPG 435 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + +IP+LGAL R++ F ++ TE+ TP LVKP+ D+ P D ++ ++ F Sbjct: 436 IGEIPVLGALARSTSFQQDRTELIFIITPHLVKPLQTADVPLPTDSFTRTNEVDVFATGN 495 Query: 448 VNKIYGPKEASEVEG 462 + G ++ Sbjct: 496 MEGRGGLRKHGRAPA 510 >gi|294139870|ref|YP_003555848.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12] gi|293326339|dbj|BAJ01070.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12] Length = 442 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 129/461 (27%), Positives = 201/461 (43%), Gaps = 56/461 (12%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 +++ LNK ++Q+P + + +S T AD + + +FGK G ++ ++ D Sbjct: 2 TLAVTLNKAELVQLPKTAKSIFISSNTIADYQALTNTKIMVFGKRAGTTSLYVLDADENV 61 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + + + + ++ L +R D+ + E ++ + L G V T +++ V LSE ++ Sbjct: 62 IYSASVKVSHNVTELNGLIRSEFPDALVSAESIAGKLFLKGRVPTPTMAEKIVRLSEGYV 121 Query: 169 SQSGRNQY----------------------------ANSSSKKVMNLLNIAGEDQVTLKV 200 SQ ++ S +++N L I QV L+V Sbjct: 122 SQPQSSKGKQQGGKSSGQAKGSKQQGQNGGGQESQSGTGSKGELINQLEITMSTQVNLRV 181 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 IAEV R++ ++G + G G F+ L ++ Sbjct: 182 RIAEVSRNVSNKLGIKWGSQGF------------------GTGKFAFSDGLGFSKLSVMV 223 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 AL I LAEP LTAISG+ ASF GG+ + T S+ +GV L F P Sbjct: 224 DALATNGMITVLAEPNLTAISGEKASFLVGGEVPIPLIYGDT--VSIEYKPFGVRLDFKP 281 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TVLSP RI L+I+ EVS N P + RKA TT+EL SG + L GLL+ Sbjct: 282 TVLSPNRISLQIEPEVSTISQSTNVVMGDSSFPVFMTRKASTTIELASGQSFALGGLLQS 341 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + + +P + IPILGALFR++ F REETE+ I AT +LV+P L P D Sbjct: 342 TDIEQMQKMPWIGDIPILGALFRSNEFKREETELIIIATVYLVEPTRGDSLPLPTDGLIP 401 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYK----GAIGFIY 473 D + + + + N + G GF Y Sbjct: 402 MSDVERLLAWPRSGVNPSTDTQVNPNDNRQLRLLGDNGFYY 442 >gi|295700370|ref|YP_003608263.1| type II and III secretion system protein [Burkholderia sp. CCGE1002] gi|295439583|gb|ADG18752.1| type II and III secretion system protein [Burkholderia sp. CCGE1002] Length = 634 Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 113/473 (23%), Positives = 210/473 (44%), Gaps = 36/473 (7%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P+ A + EI +S+ + K I++ + ++ + +P A Sbjct: 74 MPTGATSGRMVAPAQLTGPNCTGEIRDESNVSVAVGKSILVPLVEPARNRTLGNPVVAQA 133 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRV 138 + S RT+Y+ G +VG N+I+ G G +D+ + D L+ TL + + + IRV Sbjct: 134 TLVSQRTLYVVGMSVGTTNMIVQGRSGAC-QIIDVSVGVDAEGLQRTLAQLLPNERGIRV 192 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---------------- 182 + +VL G V + Q +Q+A+ ++ + Q +S++ Sbjct: 193 SSAAGNLVLAGRVSSGQAAQQAMSIAGAYAGAQPTQQDQSSTASFGNGGSISQQSSSVSK 252 Query: 183 --KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 +V+N++ + QV L+V +AEV + +L Q+G +I G + + + S Sbjct: 253 GSEVINMMTVDSPQQVMLEVKVAEVSKTLLNQLGAAVNIQGGFGSWTGALVSSLLAGVSS 312 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + F + A + + + LAEP L +SGQ ASF +GG+ S Sbjct: 313 G----VAVSKANNRPFNIAVDAQKSDSLGKILAEPNLVTLSGQEASFLAGGRVFIPVPQS 368 Query: 301 STG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDM 348 + ++ ++GV L FTPTVL+ R+ L++ EVSE + + Sbjct: 369 NGTGGSTITLQEEEFGVGLKFTPTVLAGSRVNLKVAPEVSELSPTGVTVQATGTSSTAIL 428 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R+A TTV++ G + + GL++++I + +P + ++P+LGALFR++ F ++ T Sbjct: 429 PLITTRRASTTVQMNDGESFAIGGLIQNNITGALKALPGIGEVPVLGALFRSTSFQQDRT 488 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 E+ T LVKP+ D P D ++ D + + + + Sbjct: 489 ELIFIVTVHLVKPLPPGDYPLPTDSFTGVSDGTVYATGNMEGRRPTASPNAPQ 541 >gi|332188377|ref|ZP_08390102.1| bacterial type II and III secretion system family protein [Sphingomonas sp. S17] gi|332011606|gb|EGI53686.1| bacterial type II and III secretion system family protein [Sphingomonas sp. S17] Length = 511 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 131/496 (26%), Positives = 212/496 (42%), Gaps = 39/496 (7%) Query: 1 MRYLQRTFFTMMS--IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI 58 M R+ T + + P A S + I + Sbjct: 1 MTMTMRSILTGAGRGSVVALMLAPLLLAPAPAHGAPAGPGDSADAGSGAGVLEINTGRAR 60 Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++ +P + D+ V+D T ADV V SP +Y+FGK G+ + G + + I Sbjct: 61 LITLPRPMTDLFVADDTIADVQVRSPTQLYIFGKKPGETTISATARGGAVVYATTVRIGN 120 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 ++ + LR + ++ I ++ ++L G V D A L + ++ + Sbjct: 121 NLDSIGRMLRLAMPEAQIASTPMNGLILLTGTVAAPDDVAEAERLVQAYVGKDT------ 174 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAAD 233 KV++ L A QV L+V IAEV R+ +K IG + +G G Sbjct: 175 ----KVISRLKTATPLQVNLQVRIAEVNRNFVKSIGVNLLNRDRNSSGFVFGIGSGRNPG 230 Query: 234 FGGKFVSEGG----------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + G + G + + E + TLA P L Sbjct: 231 TITDLTNAAGTTIGTQYGFNQGPLRTTLGLGGRVLGMDLLGAMDLGETLGQVSTLANPNL 290 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TA+SG++A+F +GG+ + GA SV YGV L +TPTVLS GRI LR++ EVS Sbjct: 291 TALSGETATFLAGGEIPIPLS-TGLGAVSVEYKQYGVSLSYTPTVLSDGRISLRVRPEVS 349 Query: 338 EPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + + ++ +P+ R+A+TT+EL SG ++++ GLL + E P L +P+ Sbjct: 350 QITSVGAVTISGTTIPALTTRRAETTLELGSGQSMMIGGLLSNSRDNSIEKTPWLGDLPL 409 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +GALFR++ F R ETE+ I TP+LVKPV + D++ P D +DA+ R+ Sbjct: 410 IGALFRSNAFKRNETELVIIITPYLVKPVNSPSDIALPTDGQRSPNDAERVLLGRMAAGS 469 Query: 453 GPKEASEVEGQNYKGA 468 +G Sbjct: 470 SEPRPVPTMATPVQGR 485 >gi|78186537|ref|YP_374580.1| type II secretion system protein [Chlorobium luteolum DSM 273] gi|78166439|gb|ABB23537.1| type II secretion system protein [Chlorobium luteolum DSM 273] Length = 461 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 109/457 (23%), Positives = 191/457 (41%), Gaps = 51/457 (11%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 + + + + + ++ ++ V V +P AD ++ + +YL GK G N+I Sbjct: 14 FSGLAAPSTYLVPVGESRVYRLEQPIKRVAVGNPEVADYIMLNSSELYLLGKKTGATNLI 73 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQR 159 L G L + + R++ ++ L+ + +I++ +VL G ++ Sbjct: 74 LWDQKGNCTSTL-LQVSRNVYPIKKLLKTALPKETDIQIFASGPALVLAGSASNSLAAES 132 Query: 160 AVELSETFLSQ-------------------------------------SGRNQYANSSSK 182 A L + +L + A + Sbjct: 133 AYRLVKAYLGGTVPGVNPESSLSNSGSGSAAPASMSGTQNSSYAAPVIATSASTAPAGMS 192 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++NLL + QV L+V IAEV + ++ +G + + FVS Sbjct: 193 GLVNLLTVRDTQQVRLEVRIAEVSKSYIETLGLGWTQ------GVGNTQGSLMTGFVSNA 246 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + + A + I+ LAEPT+ A+SGQ F GG+ S+ Sbjct: 247 TLNLLLQTKSNPGNRLDMDAERKEGLIKILAEPTMVAMSGQEGYFLVGGKVYTP-TLSTN 305 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADT 358 GA YGV L FTP VL GRI L++ EVSEP V +G +P ++ A + Sbjct: 306 GAVDYVERTYGVGLRFTPVVLDSGRISLKVAPEVSEPLKEAVTAGTSGPLPGFKTSFASS 365 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TV++ G +V+ GLL+D++ ++ +PLL+ IPILG+LFR++ + E TE+ + P L Sbjct: 366 TVQMREGENLVIGGLLRDNLTEVVRAVPLLADIPILGSLFRHTEKSSETTELMVIIRPTL 425 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 +K + P D + ++ F ++ G K Sbjct: 426 IKASD-KAPELPTDRFVPPSSSELFIEGKLQSSRGSK 461 >gi|254418362|ref|ZP_05032086.1| Putative phospholipid-binding domain family [Brevundimonas sp. BAL3] gi|196184539|gb|EDX79515.1| Putative phospholipid-binding domain family [Brevundimonas sp. BAL3] Length = 517 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 141/533 (26%), Positives = 257/533 (48%), Gaps = 75/533 (14%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MR T+ + + A + + + AAV + ++ I++ + Sbjct: 1 MRKT-PVRKTVALACVLLAGLGAAPVAGLAQTRAAVSMGAAPQL-----INLPRGTSFAV 54 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D +DV+V++P A+ ++HSPR + + G G+ + + + G+ +L+L + ++ Sbjct: 55 DLPADARDVIVANPQVAEAMLHSPRRITVIGIAPGETDAVFLDAAGRTILSLRVRVDAGT 114 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + L+ TL R + S IR E V+D+V+L G+ + + +A +++ F+ S+ Sbjct: 115 SALQDTLSRLVPGSQIRAEAVNDSVILSGVADSPAQAVQAAQVARAFV----------SA 164 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 +KV+N+++IAG DQVTLKV + EV+R +KQ+GF S G ++ + V+ Sbjct: 165 PEKVLNMISIAGSDQVTLKVRVVEVQRSAIKQLGFDTSAVVGQLGSTQWLLGNSATWGVN 224 Query: 241 EGGDFSVKGVLDRFSF-------------------------------------------- 256 G + L R + Sbjct: 225 GGLIGGISAGLSRDTTKNYQMQRPCVGPGWTPGALCPVTVRGPDDASNWDTAQPGTGPGS 284 Query: 257 ------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + A ER +RTLAEP LT+++G++ASF +GG+ + G +V Sbjct: 285 NDLNKGSATVKAFERVGLLRTLAEPNLTSVNGEAASFLAGGEFPIPSGRDRDGNITVVYK 344 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---------GVNAGDMPSYRVRKADTTVE 361 YGV L F P VL GRI L+++ EVSE ++ +P VR+++ TVE Sbjct: 345 PYGVALSFRPVVLDAGRISLQVKVEVSELTSQGGLTIGAGTTSSVSLPGLSVRRSENTVE 404 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L SGG++++AGLL+++ +Q + +P ++ +P+LG LFR+ + ETE+ + P++V P Sbjct: 405 LSSGGSMMIAGLLQENTRQAIDALPGMTNLPVLGQLFRSRDYLNGETELVVIVEPYIVSP 464 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 + + P D + D++ F ++N+IYG + G ++GA G++ + Sbjct: 465 TSPDRMQTPADGLRIASDSQTILFGQLNQIYGSPSPTAQSGAVWQGAAGYVIE 517 >gi|319783874|ref|YP_004143350.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169762|gb|ADV13300.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 482 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 122/434 (28%), Positives = 203/434 (46%), Gaps = 18/434 (4%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 ++ V K I + K + +++ DP A+V + ++ Y+ G N+G Sbjct: 43 DVVYVSSTKNASIKVAKGKPKTIITSAAFYQIVIGDPEIANVNPLTDKSFYVLGNNLGTT 102 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 + L + + +DI + D L T+R + D+ I+V + VVL G + Sbjct: 103 GIALFDEKKQLVGTVDIEVTLDTDQLASTIRASVPDARIKVGSANGRVVLSGEADDAVAA 162 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 ++A +++ F +++V+N +NI+ QV L V E+ R + +G ++ Sbjct: 163 EKANKIATRFSG-----------AEEVINSVNISSSQQVQLNVRFVEINRQAGQDLGAKY 211 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + + + D G + G+ + + + S + + ALE R LAEP L Sbjct: 212 AANFAYGLGGRDVSIDPGTVPTAGTGEIIGRLLSNGVSIDIAIKALEERGLARRLAEPNL 271 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A SGQ+ASF +GG+ VS G SV+ YGV L FTPTVL G + L I EVS Sbjct: 272 IARSGQTASFLAGGEFPIP-VSEDNGKISVSYKKYGVSLDFTPTVLKDGLVSLDIAPEVS 330 Query: 338 EPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + +P + VR+A T+V+L +G + ++AGLL+ IP L K+P+ Sbjct: 331 SIDASASYNIGTISVPGFIVRRARTSVDLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPV 390 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 LGALF + + R ET++ I TP+LVKPV + L P D +A +F N ++ Sbjct: 391 LGALFSSKSYQRRETDLVIIVTPYLVKPVDPSKKLVEPTDGTQPASNAD-YFLNNTEEVK 449 Query: 453 GPKEASEVEGQNYK 466 V + + Sbjct: 450 DSDAGRTVALADGR 463 >gi|288956969|ref|YP_003447310.1| pilus assembly protein [Azospirillum sp. B510] gi|288909277|dbj|BAI70766.1| pilus assembly protein [Azospirillum sp. B510] Length = 491 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 117/441 (26%), Positives = 201/441 (45%), Gaps = 32/441 (7%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ + ++++ +V V+DP ADV S +++ G+ G+ V + + + Sbjct: 66 MTLDVGTSEMVRLSAPATNVYVADPEIADVQAASGTVIFVLGRKPGRTTVYALTEGDRVV 125 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 L+ DI + +A L + + V + +++ G V T ++ +EL F Sbjct: 126 LHRDIRVIHSLAPLREQITARFPGMPVTVTSAPNRLIVTGEVPTPAIAESVMELVNGFAR 185 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGS 222 KV+N + + G QVTL+V +AEV R + +++GF + Sbjct: 186 ----------PDDKVVNQMAVTGPVQVTLRVQVAEVARSVTQELGFNWEGAVKIGDFAIA 235 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVL----DRFSFETVLHALERATAIRTLAEPTLT 278 A G S G S+ G+L + + ++ A++ + LA+P L Sbjct: 236 PGFGRDFLNATSGAIQRSATGASSLAGILKSSNGKANIAGIVDAMQDQGLVTLLAQPNLV 295 Query: 279 AISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 A+SG+ A F +GG+ S + V YGV L+F PTVL+P RI L ++ EV Sbjct: 296 AMSGKPAMFLAGGEFPIPVSAGDSGSNKIQVEFKQYGVALNFVPTVLAPDRIALTVRPEV 355 Query: 337 SEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 SE + VN +P+ VR+ +T+VEL SG + + GLL++ + + P L +P Sbjct: 356 SELTDVGAVTVNGLTIPALTVRRVETSVELGSGESFAIGGLLQNSNRSSLKKFPGLGDLP 415 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +LG LFR+ RF ETE+ + TP++V P+ P + + R + Sbjct: 416 VLGELFRSRRFINNETELVVIVTPYVVNPIQRGPGVIPQRGTKPNREVEELLRRRQQALG 475 Query: 453 GPKEASEVEGQNYKGAIGFIY 473 P+ A +Y G GFIY Sbjct: 476 LPEPAG-----SYYGPAGFIY 491 >gi|209515951|ref|ZP_03264812.1| type II and III secretion system protein [Burkholderia sp. H160] gi|209503609|gb|EEA03604.1| type II and III secretion system protein [Burkholderia sp. H160] Length = 431 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 112/443 (25%), Positives = 193/443 (43%), Gaps = 23/443 (5%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 + ++I +L +P V V+DP ADV V +P T+++ GK G + Sbjct: 3 GALAASGDPSLAIAAGGGEMLHLPEAAVAVFVADPDVADVHVPTPETVFVLGKKAGTTTL 62 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 +G + +L +++ D ++ L + + ++++ G V + Sbjct: 63 FALGAHNRTILRETVVVSADTPSIQRMLDARFPQFQLTLTAAPGSLMVAGRVPDAAAADA 122 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ +L + ++N L + QV L+V I EV R++ +Q+G + Sbjct: 123 VMQSLTPYLHDK----------ETLVNRLTLTRPIQVHLRVRITEVDRNVTQQLGINWNA 172 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-----FETVLHALERATAIRTLAE 274 G S G + +L F + VL AL++ I LAE Sbjct: 173 LGQSGNFIGGLFNGRAGSATTTLSSTGAFSILGAFQAGKWAIDGVLDALDQEGLITMLAE 232 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P LTA+SG++ASF +GG+ T + ++ YGV L FTPTVL+ RI L+++ Sbjct: 233 PNLTAMSGETASFLAGGEFPIPVPQGQTNSITIEFKPYGVSLDFTPTVLADNRISLKVRP 292 Query: 335 EVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE + +P+ VR+ +TTVEL SG + + GLL+ + + +P L K Sbjct: 293 EVSELDTTNGVTIDSIKVPALTVRRVETTVELSSGQSFAIGGLLQSNTSDVLAELPGLGK 352 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 +P+LG LF + + ++E+ + TP++V+P L +P D + Sbjct: 353 LPVLGKLFSSKSYLNNKSEVVVIVTPYIVQPAEPGRLRQPIDTIVHPSSDIEYVLQSRLG 412 Query: 451 IYGPKEASEVEGQNYKGAIGFIY 473 I GA GF+Y Sbjct: 413 IDPLSG----SVPRLVGAAGFVY 431 >gi|170692564|ref|ZP_02883726.1| type II and III secretion system protein [Burkholderia graminis C4D1M] gi|170142220|gb|EDT10386.1| type II and III secretion system protein [Burkholderia graminis C4D1M] Length = 614 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 122/461 (26%), Positives = 211/461 (45%), Gaps = 25/461 (5%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 S N + A+ + AA + + + + K ++Q V++ + +P Sbjct: 56 MTISMNAAPAQPSSAMQNAAARGPACTRTQSEQSTVVVPVGKSTLMQTAEPVRNRTLGNP 115 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 A + SP+T+Y+ G VG N+I+ G G +++++ D L+ +L + + D Sbjct: 116 LIAQATMVSPKTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADAGGLQTSLSQLMPDE 174 Query: 135 -NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------GRNQYANSSSKKVMNL 187 NIRV V+ +VL G V + Q + +A E+++ + + N N S V+N+ Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARTTLPNPNGAANGNGNGKSATVLNM 234 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 +++ QV L+V +AEV + +L Q+G +I G S + + S Sbjct: 235 MSVDSPQQVMLEVKVAEVSKTVLNQLGAAMNIQGGFGSWSGALISSLLAGVSS----IVD 290 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + F + A ++ LAEP L +SGQ A+F +GG+ S+ S Sbjct: 291 VNKANNRPFNVAIDAQHGDNLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGVST 350 Query: 308 ---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRK 355 ++GV L FTPTVL+ GRI L++ EVSE +P R+ Sbjct: 351 IILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITTRR 410 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A TTV++ G T + GL+K + + IP + ++P+LGALFR++ + ++ TE+ T Sbjct: 411 ASTTVQMNDGETFAIGGLIKSNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELVFIIT 470 Query: 416 PFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 P LVKP+ +L P DH ++A + + Sbjct: 471 PHLVKPLQTASNLPLPTDHLKTPNEADVYLMGNMEGRDPAG 511 >gi|323529413|ref|YP_004231565.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] gi|323386415|gb|ADX58505.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] Length = 616 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 120/466 (25%), Positives = 213/466 (45%), Gaps = 27/466 (5%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 S NP+ A+ ++ AA + + + + K ++Q V++ + +P Sbjct: 56 MTISMNPAPAQPANTMQSAAARGPACTRTQSEQSTVVVPVGKSTLMQTAEPVRNRTLGNP 115 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 A + SP+T+Y+ G VG N+I+ G G +++++ D L+ +L + + D Sbjct: 116 LVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADSGGLQTSLSQLMPDE 174 Query: 135 -NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS--------GRNQYANSSSKKVM 185 NIRV V+ +VL G V + Q + +A E+++ + + N A + + V+ Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARSTLPAANGGTNGNGGAPAKAATVL 234 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 N++++ QV L+V +AEV + +L Q+G +I G S + + S Sbjct: 235 NMMSVDSPQQVMLEVKVAEVSKTVLNQLGSAMNIQGGFGSWSGALISSLLSGVQS----I 290 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + + F + ++ LAEP L +SGQ A+F +GG+ S+ Sbjct: 291 AAVSKANNRPFNVAVDGQHGDDLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGV 350 Query: 306 SV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRV 353 S ++GV L FTPTVL+ GRI L++ EVSE +P Sbjct: 351 STIILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITT 410 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+A TTV++ G T + GL+K + + IP + ++P+LGALFR++ + ++ TE+ Sbjct: 411 RRASTTVQMNDGETFAIGGLIKSNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELIFI 470 Query: 414 ATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 TP LVKP+ +L P D ++A + + Sbjct: 471 ITPHLVKPLQAVANLPLPTDRLKTPNEADVYLLGNMEGRDPAGSRK 516 >gi|300692331|ref|YP_003753326.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07] gi|299079391|emb|CBJ52062.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07] Length = 644 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 113/446 (25%), Positives = 207/446 (46%), Gaps = 41/446 (9%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + ++++ + K ++Q+P V++ V +P ++ SP+T+YL G+ VG N+I+ Sbjct: 119 GAMRAHSEVTVPVGKSTMVQLPEPVRNRTVGNPNVVQAMLVSPQTLYLLGQEVGTTNMIV 178 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L TL + D+ +RV +D++VL G V +Q+ Sbjct: 179 QGRSGSC-SVIDVAVGADPGGLLATLHELVPDAKGVRVSAAADSLVLSGSVSDSVQAQKV 237 Query: 161 VELSETFLSQSG----------------------RNQYANSSSKKVMNLLNIAGEDQVTL 198 V+++ F+++ A S +++N++ + QV L Sbjct: 238 VDIANAFVTRQTRGPSQHDQGGGQGANSATQGAITAPGAQPRSPRIINMMAVEAPQQVML 297 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 +V +AEV + ++ Q+G ++ + S A+ F+S D + + Sbjct: 298 EVKVAEVSKTLIDQMGAAFNLNSAFGSWSFGAIAN----FLSSSQDLVSFSKANNLPLKF 353 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVV 315 L A ++ LAEP+L AISGQ ASF +GG+ S TG + +GV Sbjct: 354 ALDAQRGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVPQSFTGGVTTIVLQEETFGVG 413 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVI---------GVNAGDMPSYRVRKADTTVELPSGG 366 L FTPTV+ GRI L++ EVSE +P R+A TT+++ G Sbjct: 414 LRFTPTVMENGRINLKVAPEVSELSPTGVAVTAANTNGTTILPLITTRRASTTLQVRDGQ 473 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + GL+K ++ + +P + ++P++G+L R++ F R++TE+ TP LVKP+ Sbjct: 474 SFAIGGLIKSNVTGSLKALPGIGELPVIGSLARSTSFQRDQTELLFVVTPRLVKPL-PAQ 532 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIY 452 P D + + + + + Sbjct: 533 YPMPTDSFGPINRGELYLNGNMEGRR 558 >gi|152994347|ref|YP_001339182.1| type II and III secretion system protein [Marinomonas sp. MWYL1] gi|150835271|gb|ABR69247.1| type II and III secretion system protein [Marinomonas sp. MWYL1] Length = 463 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 119/441 (26%), Positives = 210/441 (47%), Gaps = 14/441 (3%) Query: 7 TFFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 + +FL S A L P E+ + + + ++ +++ +N+ +L +P Sbjct: 9 VVPLLFGVFLLSGVSRAAYLEPMNNTSESQSVIGTSAYQQVEVSGNVNLVVNRGKLLTLP 68 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + VL+++P A + SP +++F K G ++ + + + +L L + D+ L Sbjct: 69 QNAAKVLIANPDIASFQMPSPDNVFVFAKKSGSTSLYALDDENQVILALTLNAGYDLNSL 128 Query: 124 EMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + + + SN++V + + +++ G V+T Q ++R ++ E F+ S Sbjct: 129 TKQVAQEVPGSNVQVGPATENGLIVRGSVQTPQQAKRVIDSVEAFVGGDATGSAGAGSQT 188 Query: 183 -KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKF 238 +++N L + Q+ + V I EV R++ +GF G + + D Sbjct: 189 LRIVNQLKVELSSQINISVRIVEVSRNLSSSLGFSWDALFDNGKYFARNSASLFDATTGA 248 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + G + + VL AL LAEP LTA+SG++A F GG+ + Sbjct: 249 FTGSGVTNAVFGGASGNLGGVLSALSNDGLASILAEPNLTAMSGETAGFAVGGEVPIVII 308 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVR 354 + ++ YGV++ TPT+LSP RI L I EVS+ + + +P+++VR Sbjct: 309 --TNNNVTIEYKQYGVIMRMTPTLLSPNRISLHIAPEVSDLTEEGAVELQGLTVPAFKVR 366 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +ADTTVEL SG + LAG+L+ + Q G+P L IP LG LF + +EETE+ I A Sbjct: 367 RADTTVELASGQSFALAGMLRSSVSQTVTGVPGLRSIPGLGRLFESETNQKEETELVIIA 426 Query: 415 TPFLVKPVAMRDLSRPDDHYS 435 T ++V P + DL P S Sbjct: 427 TAYVVAPTSSGDLQTPAKGIS 447 >gi|78186671|ref|YP_374714.1| type II secretion system protein [Chlorobium luteolum DSM 273] gi|78166573|gb|ABB23671.1| type II secretion system protein [Chlorobium luteolum DSM 273] Length = 486 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 114/454 (25%), Positives = 194/454 (42%), Gaps = 54/454 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 + + + + ++P V V V DP AD ++ +P +YL GK G N+ + GK + Sbjct: 38 RVPVGESRVYRLPQPVTRVAVGDPEVADYIMLNPSEIYLLGKKTGSTNLTVWDRKGK-VS 96 Query: 111 NLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + + + R++A ++ LR + I++ +VL G + A L + Sbjct: 97 SRSLRVSRNVAPIQELLRVVLPGETGIQLYASGHALVLSGSASDAMAADTAYRLVIAYSG 156 Query: 170 QSGRNQYANSS--------------------------------------------SKKVM 185 + S+ + +V+ Sbjct: 157 GTVPALNPESALLAGSAGASGSVGAPGISGIHDSAPAAPSALPGAAASRSPAARDTPRVV 216 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 NLL I QV L+V IAEV R ++ +G + S+ S Sbjct: 217 NLLKIRDPQQVRLEVRIAEVSRSHIESLGIGWTQGRGSTQGSLMTGFVSNATLDLLLKTG 276 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + G + + A ++ ++ LAEPT+ A+SG+ F GG+ + G+ Sbjct: 277 GMPGSTEGNRLT--VDAEQKKGLVKILAEPTIVAMSGEEGYFLVGGKVYTP-TLGTNGSV 333 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVE 361 YGV L TPTVL GRI L++ EVSEP V + +P++++ A TTV+ Sbjct: 334 DYVERTYGVGLRCTPTVLDSGRISLKVAPEVSEPLKEAVTAGTSTSLPAFKLSYASTTVQ 393 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +V+ GLL+D++ ++K +PLLS IP+LG+LFR++ N+E TE+ + P LVK Sbjct: 394 MQEGENLVIGGLLRDNLTEVKRSVPLLSSIPVLGSLFRHTEMNKETTELMVIVRPTLVKA 453 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 P D + + F +++ G K Sbjct: 454 GNP-APELPTDRFVPPAPLELFIEGKLDGSGGAK 486 >gi|294012433|ref|YP_003545893.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] gi|292675763|dbj|BAI97281.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] Length = 499 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 126/470 (26%), Positives = 219/470 (46%), Gaps = 27/470 (5%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T T + L ++ + A + +N + + + + + ++ +P + Sbjct: 5 TVHTAAAKPLLGPAIALGLAVAVAAAPTSALNAAPASMQDNAIL-LSVGGSKVINLPAKM 63 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 DV++ DP DV V S +YL K G+ V +GK + + + + ++ ++ Sbjct: 64 SDVVIGDPDVVDVHVRSQNQLYLIAKKAGETTVFATATNGKVLFSGTVRVGNNLTSIDDM 123 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L+ + +++I V ++ V+L G + +D+ A L++ F+ + V++ Sbjct: 124 LKLAMPNADIAVNKMNGMVLLTGTIAAPEDAAEAERLTQAFVGKEVT----------VVS 173 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------SSSGPSKSFAAD 233 L A QV L+V IAEV RD+ +IG + + + Sbjct: 174 RLRTATPLQVNLQVKIAEVSRDVGHKIGMNWKSQDLTGGKWAGGIGGGTRDAITFNSGGG 233 Query: 234 FGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 F ++GG + VL E + TLA+P LT++SG++ASF +GG+ Sbjct: 234 GTFNFTADGGYSLGGVARVLGLDIGAVLDLAESSGLATTLAQPNLTSLSGETASFLAGGE 293 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 + Y + + G S+ YGV L FTPTVL+ GRI LR++ VS V++ +P+ R Sbjct: 294 YPYTVSNGTQG-NSIEFKQYGVQLAFTPTVLADGRISLRVRPTVSSLDFSVDS-SVPALR 351 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A+TTVEL SG ++AGLL +D +P + +PILG+LF++ F R ETE+ I Sbjct: 352 SRTAETTVELGSGQAFMIAGLLNNDTANSISKVPGIGNLPILGSLFKSRNFQRHETELVI 411 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 TP+LVKP+ D+ P D + ++ + F + + A Sbjct: 412 VVTPYLVKPMNASDVRLPTDGFRNANEGQGLFLQQGHDGISGAHAPMPSR 461 >gi|27378611|ref|NP_770140.1| hypothetical protein blr3500 [Bradyrhizobium japonicum USDA 110] gi|27351759|dbj|BAC48765.1| blr3500 [Bradyrhizobium japonicum USDA 110] Length = 550 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 132/534 (24%), Positives = 216/534 (40%), Gaps = 73/534 (13%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-----KKISIGLNK 56 R +T +++ + +VA P A AA S + +++ + +NK Sbjct: 5 RVSGKTVARLLAFGVMGLGAAVALCGPADRAEAADRRGSSGGVFVSEMNDVQRVRVVVNK 64 Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 +V ++ P DV S +Y+ GK G NVIL KQ+ LD+ + Sbjct: 65 SRTFKVDTAFATIIAGSPDIVDVKSLSDHMIYVQGKQTGTTNVILFDSAMKQIGVLDVEV 124 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 D +L+ +R +RV VVL G ++RA+ ++ + +++ G Sbjct: 125 VIDTGNLQQNIRTGTGMQGVRVSASEGQVVLSGTAVDAVAAERAMAIATSTVAKGGT--- 181 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------- 219 V+N +++A QV L+V EV R+ + +G S Sbjct: 182 -------VVNAMSVAAPQQVMLEVRFLEVSREAGRNLGVNLSAANANGTNIGNSGLGRVT 234 Query: 220 ------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--------------------- 252 G + + A G + G V G L Sbjct: 235 AAGRTPIGGINTANGPLGAGGGPVGSAPTGSLPVLGTLGTLAGTAGGIAPAPFGTLLTSL 294 Query: 253 -----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GA 304 S + ++ ALE R LAEP LT +SG +A F +GG+ + +T Sbjct: 295 IRTSNGGSVDMLISALETKGLARRLAEPNLTTLSGDAARFLAGGEFPVPIPTQTTNGFPT 354 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTV 360 ++ +GV L F PTVLS G I LR++ VSE + + +P+ R A TTV Sbjct: 355 ITIEYKKFGVELAFVPTVLSRGVINLRVEPSVSELDFANAVTIQGTTVPALTRRDARTTV 414 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL G + +AGLL+ +Q +P + +P++G LF + + +EET++ I TP LV Sbjct: 415 ELRDGQSFAIAGLLQTRNRQDVSQLPWIGSVPVIGTLFSSKSYQQEETDLVIIVTPRLVA 474 Query: 421 PVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 P A + L+ P D +D F ++ + + G + KG G I Sbjct: 475 PAAPGQQLASPLDSRLPANDVDFFLNGQME-VRKRYDDYVNSGGDVKGPYGHII 527 >gi|148557761|ref|YP_001265343.1| type II and III secretion system protein [Sphingomonas wittichii RW1] gi|148502951|gb|ABQ71205.1| type II and III secretion system protein [Sphingomonas wittichii RW1] Length = 526 Score = 288 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 134/502 (26%), Positives = 208/502 (41%), Gaps = 67/502 (13%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MR + I + P A AA + + + + ++ + ++ Sbjct: 1 MRASMKFLAGGALITAIALAPVAASAAVRPSRGAAAVRTATIG-KPSETTTLSIGSGQMI 59 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + + D+ V+D ADV V S +YLFGK G+ V G + + + + +I Sbjct: 60 ALSAPISDLFVADDKIADVQVRSTTQLYLFGKGAGETAVYATDKAGNVVWSSIVRVGSNI 119 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 ++ L+ + ++ I ++ V+L G V + D + A +L E F+ + Sbjct: 120 TSVDTMLKLAMPEAAITATTMNGIVLLTGTVASPSDVEEAQKLVEQFVGKET-------- 171 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--------------- 225 +V+N L A QV+L V IAEV R+ K IG ++ G Sbjct: 172 --QVVNRLKSAVPLQVSLHVKIAEVSREFAKSIGINLLNRDTTGGFLFGVAQGRNFGSIG 229 Query: 226 ------------------------------------PSKSFAADFGGKFVSEGGDFSVKG 249 ++ D GK G F + G Sbjct: 230 NLDTSAFPKLDASSLYGLPAGSLSLPFNPATGQFIAGGTAYTFDKLGKGAGSGTSFGLAG 289 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + E + TLA+P LTAISG++ASF +GG+ GA SV Sbjct: 290 KFLGMDLAAAIDLAEADGLVTTLAQPNLTAISGETASFLAGGEIPIPLA-QGLGAVSVEF 348 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSG 365 YGV L FTPTVL GRI +R++ EVS+ N +P R+A+TTVEL SG Sbjct: 349 KQYGVSLSFTPTVLGDGRISIRVRPEVSQLTDAGSVRLNGFTIPGITTRRAETTVELGSG 408 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++ GLL + + P L +PILGALFR++ F R ETE+ I TP+LVKPV+ + Sbjct: 409 QAFMIGGLLSNAQNSNVDKAPFLGDLPILGALFRSNGFKRNETELMIVVTPYLVKPVSPQ 468 Query: 426 DLSRPDDHYSVEDDAKAFFFNR 447 ++ P D + + Sbjct: 469 QIALPTAGLRAATDGERLIAGQ 490 >gi|193213115|ref|YP_001999068.1| type II and III secretion system protein [Chlorobaculum parvum NCIB 8327] gi|193086592|gb|ACF11868.1| type II and III secretion system protein [Chlorobaculum parvum NCIB 8327] Length = 472 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 116/451 (25%), Positives = 191/451 (42%), Gaps = 53/451 (11%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 I + + + ++ ++ V V +P AD ++ +P +YL GK G N+I+ Sbjct: 30 IAAPSTYRVSEGESRVYRMGSPIKRVAVGNPEIADYIILNPTELYLLGKKTGATNLIVWD 89 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 +G + + + R++ ++ +R + + +I + +VL G V ++ A Sbjct: 90 QNGNS-ASTPLQVSRNVEPIKDLIRTVLPNETDIHIYSSGPALVLAGTVSNSLAAETAYR 148 Query: 163 LSETFLSQS-------------------------------------GRNQYANSSSKKVM 185 L + +L G S V+ Sbjct: 149 LVKGYLGGDVPADNPEKTLTNTKPADSYAGTASLSGIVKSASLVAGGPTGAEGSGMSGVV 208 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 NLL + QV L+V IAEV + ++ +GF+ + G + + FVS Sbjct: 209 NLLKVRDAQQVRLEVHIAEVSKTFMQALGFEWA------GRIGNVSGGLMTGFVSNETIN 262 Query: 246 SVKGVLDRFSFETVLHALER--ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + D S + A I+ LAEPT+ A+SGQ F GG+ ++ G Sbjct: 263 LLLK--DNTSHSQRIKAENECDNGWIKILAEPTIVAMSGQEGYFLVGGKIYVP-TITANG 319 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVE 361 A YGV L FTPTVL GRI L++ EVSEP G + +++ A TTV+ Sbjct: 320 AVDYQERTYGVGLRFTPTVLDAGRISLKVAPEVSEPPTSAADGTGTLLAFKTSYASTTVQ 379 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +V+ GLLKD I + + +PLL IP+LGALFR+++ E TE+ + P LV+ Sbjct: 380 MNEGQNLVIGGLLKDKITETLKAVPLLGDIPLLGALFRHTKIESENTELLVVVRPTLVEA 439 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 P D + + FF ++ Sbjct: 440 SDTPP-ELPTDRFIPPTQKELFFDGKLQGSR 469 >gi|297581608|ref|ZP_06943530.1| flp pilus assembly protein [Vibrio cholerae RC385] gi|297534015|gb|EFH72854.1| flp pilus assembly protein [Vibrio cholerae RC385] Length = 469 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 115/457 (25%), Positives = 202/457 (44%), Gaps = 37/457 (8%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + + +N+ I+ V D+QDV VSDP V S R + + GK++G +++++G + Sbjct: 21 AESPLVLHVNQNQIITVDGDIQDVFVSDPKIVVVHAPSSRHVMVSGKDIGSTDLLIMGEN 80 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + + + + D++ LE ++ ++NIR +V+ G V + + ++ Sbjct: 81 AQTLAHYKLNVNADLSELERAVQHAFPEANIRFAYSKGAIVVMGEVANPLQAHEVLSMAS 140 Query: 166 TFL-----------------------SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 F S + + K V+N L G QV + + I Sbjct: 141 GFARGLQKPEQQTLDMPANSASSGRDSGAAKPGGGIGDYKFVVNQLKTQGSAQVNISIRI 200 Query: 203 AEVRRDILKQIGFQHSITGSS-SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 E+ R +Q+G + S G+ G + G ++ ++ + ++ Sbjct: 201 VEMERATSEQLGLRWSSIGNMRWGTWDTLQTALGATPGNKFPTNTLPSGNGQHGLNVIID 260 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + + LAEP LTA SG++A+F SGG+ + + G S+ +G+ L TPT Sbjct: 261 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVDNGDDG-VSIEFKKFGIALEVTPT 319 Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLS +I L + EVS E + + ++P R+A TT+EL G + LAGL++ Sbjct: 320 VLSNRQISLTVAPEVSTLSRENSVSIAGVEVPGIETRRATTTIELADGQSFALAGLVRTY 379 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSV 436 E +P L +IPIL F + F E+E+ I AT LV+P +L+ P D Y Sbjct: 380 QDHKVEALPFLGEIPILAPFFSTNSFKNSESELVIIATARLVEPSSDPAELTTPLDRYRP 439 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + F +++ + E G G+ Y Sbjct: 440 ASRFERLFLHKM-------GETHDESTRLFGHYGYNY 469 >gi|227819321|ref|YP_002823292.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234] gi|227338320|gb|ACP22539.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234] Length = 496 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 113/451 (25%), Positives = 208/451 (46%), Gaps = 34/451 (7%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 G +++++ N I ++ D+++ DVV S +++++ GK G N+ + Sbjct: 46 TGSVQQVTLAPNDTITVRTGKPFGDLVIGSAEMIDVVPLSDQSLFIRGKQTGATNISVYD 105 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + +D+ + D + + +R + +RV +D + L G VR + QR +E+ Sbjct: 106 DNKALVGVIDVRVAADFSEVASAIRSTAPSAQVRVFNSNDRIRLTGTVRDAVELQRVMEI 165 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-- 221 ++++ S++ V+N L +A QV L+V + E R + +G S G Sbjct: 166 AQSY------------SAEPVLNQLRVAESQQVMLEVRVIEASRQTGRDLGIGWSGQGRN 213 Query: 222 ----------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + + AA G + + + V++ALE+ Sbjct: 214 GIGKATTSQGITVDDDGNLARTLGDAAGAATGMQPFGQLIAKVLEISGGQIDIVINALEQ 273 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVL 323 +R LA+P L A+SG++ASF +GG+ ++ + +T AT +GV L F+P VL Sbjct: 274 KGLVRRLAQPNLIAMSGETASFHAGGEVPIQSTVANGATLATETDYRPFGVRLTFSPVVL 333 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G I L+I+ EVSE ++ P + R A TTV L G + +AGLL+ + + Sbjct: 334 DGGLISLKIEPEVSEIDPSISVNGNPGFISRAASTTVALRDGQSFAMAGLLQSVNAKDVQ 393 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKA 442 +P L ++P++GALFR++ F + E+++ I TP +V+P DL P + +D + Sbjct: 394 QLPWLGQVPVIGALFRSTSFLKRESDLVIVVTPHIVRPSKPGEDLYSPLEQTRSSNDVEL 453 Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F + ++ G+ KG G Sbjct: 454 FALG-ILEVDKDMLRRFRNGEGVKGPYGHRL 483 >gi|296284552|ref|ZP_06862550.1| type II and III secretion system protein [Citromicrobium bathyomarinum JL354] Length = 502 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 131/476 (27%), Positives = 210/476 (44%), Gaps = 40/476 (8%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 A L + + + + + I + + K ++ VP + DV +++ + AD+ Sbjct: 1 MLLGAALCAAPLSIVPTMADAQSVVRPTQDIVLSIGKGELINVPGSMADVFIANDSIADI 60 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V S R +YLFGK+ G+ V G + ++ + +I L+ L + + I V Sbjct: 61 QVKSQRQLYLFGKSGGETTVYASNAAGDVIWAANVRVGSNIGSLDQMLALAMPQAKISVA 120 Query: 140 MVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + +TV+L G V +D+ A L FL V+ L A QV L Sbjct: 121 TMGSNTVLLTGTVANPEDAAEAERLVSAFLGDET----------NVIARLTTATPLQVNL 170 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------------ADFGG 236 +V AEV R +++ IG + +++G +D Sbjct: 171 QVRFAEVSRSLVRAIGANLLSSDATNGFQFGVTRGRNFAPQYTPGGPVGVGVTGGSDGST 230 Query: 237 KFVSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G ++ G+ L E + TL++P LTA+SG++A F +GG+ Sbjct: 231 VITGNGTGATIAGLGSLFGMDLAAALDLAETNGLVSTLSQPNLTALSGETADFLAGGEFP 290 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPS 350 GATSV +YGV L +TPTVL+ GRI +R+ EVSE + +P+ Sbjct: 291 IPIS-QGLGATSVEYRNYGVKLTYTPTVLANGRISIRVSPEVSELSSQGAVSLDGVQIPA 349 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+A TTVEL SG + ++AGL+ ++ Q + P L +PILG LFR++ F + ETE+ Sbjct: 350 LITRRASTTVELGSGQSFMIAGLMTNNSQSTIDKAPGLGDVPILGNLFRSNSFRKGETEL 409 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 I TP+LVKPV D+ P D Y+ D F G + + + Sbjct: 410 VIVITPYLVKPVDGNDIRLPTDGYNSPDTLSQLGFKETVPQGGVPDRPGPTTSDRQ 465 >gi|149186255|ref|ZP_01864569.1| type II secretion system protein [Erythrobacter sp. SD-21] gi|148830286|gb|EDL48723.1| type II secretion system protein [Erythrobacter sp. SD-21] Length = 522 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 127/470 (27%), Positives = 208/470 (44%), Gaps = 51/470 (10%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 ++I + + + ++ VP ++ DV +S+ ADV V S R +YLFGK+ G+ V Sbjct: 30 QSVTSPSQEIVLSIGRGELVNVPGNMADVFISNENVADVQVKSRRQLYLFGKSGGETTVY 89 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQR 159 G + ++ + +I ++ L + ++ I V + + V+L G V +D+ Sbjct: 90 ASNAAGDIIWAANVRVGSNIGSIDQMLSLAMPEAKINVATMGNNTVLLTGTVAAPEDAAD 149 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A L + ++ + V++ L +A QV L+V IAEV R +++ IG + Sbjct: 150 AQSLVQAYVGEGT----------NVISRLRMATPLQVNLQVRIAEVSRSVVRAIGVNLAT 199 Query: 220 TGSSSGPSKSFAADFGGKF-----------------------------------VSEGGD 244 SSSG G ++ G Sbjct: 200 VDSSSGFQFGVGQGRGAVSQFQPSFVNPVTGERIQGPLAVGQEFEGEGATIIDQITPGST 259 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 G L L E + TL++P LTA+SG++A F +GG+ G Sbjct: 260 LGAFGNLLGLDIGAALDLAETQGLVTTLSQPNLTALSGETAEFLAGGEFPIPLS-QGLGT 318 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTV 360 T++ +YGV L +TPTVL+ GRI +R++ EVSE +N +P+ R+A+TTV Sbjct: 319 TTIEYKNYGVSLAYTPTVLANGRISIRVRPEVSELSSQGSITLNGFQVPALITRRAETTV 378 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL SG + ++AGLL ++ Q E P L +P++G LFR++ + + ETE+ I TP+LVK Sbjct: 379 ELGSGQSFMIAGLLSNNSQNSIEKAPGLGDVPVIGNLFRSTTYRKGETELVIVVTPYLVK 438 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 PV D+ P D Y + + R G Sbjct: 439 PVNANDIRLPTDGYLKPTEMQRLIALREGDSEAGLVRPMPSANGTGANPG 488 >gi|37680194|ref|NP_934803.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016] gi|37198941|dbj|BAC94774.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016] Length = 462 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 108/457 (23%), Positives = 198/457 (43%), Gaps = 41/457 (8%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 K+I + + + ++ + +++ V + D T ADV S R+ +FG VG+ +++++G Sbjct: 20 AHAAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVG 79 Query: 104 HDGKQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 +G+ + + + ++ ++ LE L I ++ V D++ + G V + + + + Sbjct: 80 KEGEAIAHYRLNVKNSGLSQLEHHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILS 139 Query: 163 LSETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVT 201 L F ++ S V+N L I QV + + Sbjct: 140 LVNNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIR 199 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + E+ + +++G + + G +F + ++ +F ++ Sbjct: 200 MVEMAKSTSEELGIRWQSVNPNW----MLGVSPGNQFATGIDLTDPDNLIKESAFMGIID 255 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + + LAEP LTA SG+ A F GG+ + ++ + V +GV L TPT Sbjct: 256 ALASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPT 313 Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLS RI L + VS + I +N D+P R A TT+EL G + LAGLL+ Sbjct: 314 VLSENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTS 373 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436 + + IP L ++P +GALFR ++ + E E+ I AT LV+P + + P DH+ Sbjct: 374 EENSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRA 433 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + F + + G G+ Y Sbjct: 434 PTRLERLLFGELE--------GHTDTPKLIGDYGYRY 462 >gi|320156053|ref|YP_004188432.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus MO6-24/O] gi|319931365|gb|ADV86229.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus MO6-24/O] Length = 462 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 108/457 (23%), Positives = 198/457 (43%), Gaps = 41/457 (8%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 K+I + + + ++ + +++ V + D T ADV S R+ +FG VG+ +++++G Sbjct: 20 AHAAKQIDLEVGQSRLIPLSQEMRSVYIVDSTIADVKTPSARSALVFGAKVGKTDLVIVG 79 Query: 104 HDGKQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 +G+ + + + ++ ++ LE L I ++ V D++ + G V + + + + Sbjct: 80 KEGEAIAHYRLNVKNSGLSQLERHLETLYPSHRIALQSVGDSIAVAGTVASPEMAADILS 139 Query: 163 LSETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVT 201 L F ++ S V+N L I QV + + Sbjct: 140 LVNNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIR 199 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + E+ + +++G + + G +F + ++ +F ++ Sbjct: 200 MVEMAKSTSEELGIRWQSVNPNW----MLGVSPGNQFATGIDLTDPDNLIKESAFMGIID 255 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + + LAEP LTA SG+ A F GG+ + ++ + V +GV L TPT Sbjct: 256 ALASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPT 313 Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLS RI L + VS + I +N D+P R A TT+EL G + LAGLL+ Sbjct: 314 VLSENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTS 373 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436 + + IP L ++P +GALFR ++ + E E+ I AT LV+P + + P DH+ Sbjct: 374 EENSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRA 433 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + F + + G G+ Y Sbjct: 434 PTRLERLLFGELE--------GHTDTPKLIGDYGYRY 462 >gi|27365651|ref|NP_761179.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6] gi|27361799|gb|AAO10706.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6] Length = 462 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 108/457 (23%), Positives = 198/457 (43%), Gaps = 41/457 (8%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 K+I + + + ++ + +++ V + D T ADV S R+ +FG VG+ +++++G Sbjct: 20 AHAAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVG 79 Query: 104 HDGKQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 +G+ + + + ++ ++ LE L I ++ V D++ + G V + + + + Sbjct: 80 KEGEAIAHYRLNVKNSGLSQLERHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILS 139 Query: 163 LSETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVT 201 L F ++ S V+N L I QV + + Sbjct: 140 LVNNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIR 199 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + E+ + +++G + + G +F + ++ +F ++ Sbjct: 200 MVEMAKSTSEELGIRWQSVNPNW----MLGVSPGNQFATGIDLTDPDNLIKESAFMGIID 255 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + + LAEP LTA SG+ A F GG+ + ++ + V +GV L TPT Sbjct: 256 ALASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPT 313 Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLS RI L + VS + I +N D+P R A TT+EL G + LAGLL+ Sbjct: 314 VLSENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTS 373 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436 + + IP L ++P +GALFR ++ + E E+ I AT LV+P + + P DH+ Sbjct: 374 EENSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRA 433 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + F + + G G+ Y Sbjct: 434 PTRLERLLFGELE--------GHTDTPKLIGDYGYRY 462 >gi|162147491|ref|YP_001601952.1| type II and III secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|209545598|ref|YP_002277827.1| type II and III secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786068|emb|CAP55650.1| type II and III secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533275|gb|ACI53212.1| type II and III secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 473 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 127/489 (25%), Positives = 212/489 (43%), Gaps = 36/489 (7%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 + R M + S + A A + + + + I ++++ Sbjct: 3 ISRRVLPMAAFAGMSLCLAGADARSTHPAASGSVAHGAHAV-----LGIEEGAGKLVKLD 57 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL---IERDI 120 ++ V+DP +V SP +M++FG GQ VI G + ++ Sbjct: 58 GIATNIFVADPKVVEVRAASPDSMFVFGVGAGQTTVIATSRSGGVVARYTVVVLPSSYRA 117 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + L + + I ++ + G + + +++A+E + + + GR S Sbjct: 118 SALRRDVGQQNPRVRIG-TGADGSIGIEGTETSSESAEQALEGATALVGKGGRVGDYAS- 175 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--SSSGPSKSFAADFGGKF 238 + G QV LKV I E+ R +++++G + ++ ++ Sbjct: 176 ---------VPGSIQVNLKVRIVEMSRSLVRELGVEWQSVNALGTAAAIGISTSNPLAAL 226 Query: 239 VSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +E F+ ETV+ AL + I +LAEP LT +SGQ+ASF GG++ Sbjct: 227 TTEQSAFNFLSRFSAAGRPVTVETVIDALSQDGLIHSLAEPNLTTVSGQAASFIVGGEYP 286 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--------VNAG 346 S + V YG+ L F PTVL+ GRI L ++ EVS Sbjct: 287 IPVSSYNNNIN-VQYKQYGISLAFVPTVLADGRISLHVRPEVSALSTQGAVTLSEANGNL 345 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P+ VR+ADTTVEL SG + +AGL++D G+P L IP+LGALF++S F + Sbjct: 346 QIPALTVRRADTTVELGSGQSFAIAGLMQDSTNMQGLGLPFLGDIPVLGALFKSSSFQKN 405 Query: 407 ETEIFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 E+E+ I TP+LV+PV L PDD+++ D F R N IY V ++ Sbjct: 406 ESELVIVVTPYLVRPVDNESMLHSPDDNWAPPGDLDRIFLMRQN-IYKYAGKKNVARRDV 464 Query: 466 KGAIGFIYK 474 GF+ + Sbjct: 465 NSDAGFMVE 473 >gi|85373131|ref|YP_457193.1| type II secretion system protein [Erythrobacter litoralis HTCC2594] gi|84786214|gb|ABC62396.1| type II secretion system protein [Erythrobacter litoralis HTCC2594] Length = 574 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 128/520 (24%), Positives = 225/520 (43%), Gaps = 72/520 (13%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 + ++R + ++ P A + A + + + + + + + ++ Sbjct: 25 KTMKRRLIAKALVASLAALPVAAGPAQVAHAQSI--------VKPSQDVVLSIGRGELIS 76 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 VP + DV +++ ADV + S R +Y+FGK+ G+ + G + ++ + +I Sbjct: 77 VPGAMADVFIANDAVADVQIKSQRQLYVFGKSGGETTIYASNSAGDVIWAANVRVANNID 136 Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L+ L + ++ I + +TV+L G V +D+ A L FL Sbjct: 137 SLDQMLALAMPEAKIATATMGTNTVLLTGTVAAPEDAAEAERLVTAFLGDGA-------- 188 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKF 238 V++ L +A QV L+V IAEV R ++++IG + ++ G + +FG Sbjct: 189 --NVISRLKMATPLQVNLQVRIAEVSRSLVREIGSNLTTRDTTDGFLFGVNRGRNFGSIT 246 Query: 239 VSEGGDF----------------------------------------------SVKGVLD 252 + F + G L Sbjct: 247 DIDTSGFPQLDASAQFGLPPGSLSLPFNPATGQFVVGGANFPVASNNPGQTALNFAGRLF 306 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + ER I TL+ P LTA+SG++A+F +GG+ G TS+ ++ Sbjct: 307 GLDIASAFDVGERLGLITTLSNPNLTALSGETATFLAGGEFPIPIS-QGLGTTSIEYRNF 365 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTI 368 GV L ++PTVL+ GRI +R++ EVSE +N +P+ R+A+TTVEL SG + Sbjct: 366 GVSLAYSPTVLANGRISIRVRPEVSELSSQGAITLNGFQIPALTTRRAETTVELGSGQSF 425 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 ++AGL+ + Q + P L +PI+G LFR++ F + ETE+ I TP+LVKPV D+ Sbjct: 426 MIAGLMSNSSQNTVDKAPGLGDVPIIGNLFRSTSFRKGETELVIVVTPYLVKPVDGTDIK 485 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 P D Y ++ + N + + Q+ G Sbjct: 486 LPTDGYQTPNELQRTLGFLENDGKTGGDRPKPTAQDRDGP 525 >gi|19749313|gb|AAL98683.1| Y4xJ [Sinorhizobium fredii] Length = 411 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 128/458 (27%), Positives = 196/458 (42%), Gaps = 54/458 (11%) Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83 + AV + I +S L K + +P + V+DP AD S Sbjct: 1 MSAAAENNGDEAVPRAAPNSINATLNLSSSLGK--TVHLPAPAATIFVADPPIADYQAPS 58 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 RT+++FGK G+ ++ + +G+ + L +++ + I L LR + D I V Sbjct: 59 NRTIFVFGKKFGRTSLFALDENGEALAELHVVVTQPIGDLRAMLRDQVGDYPIHVSYTPR 118 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 +L G + A ++E FL ++N + +AG QV L V +A Sbjct: 119 GAILSGTAPNAEVVDIAKRVTEQFLGDGA----------PIVNNIKVAGSLQVNLSVRVA 168 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 EV R LK +G S G G GG + D S VL Sbjct: 169 EVSRSSLKALGINLSAFGQFGNFKVGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLD 228 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + LAEP LTA+SG++ASF +GG+ F PT Sbjct: 229 ALAKEHIASVLAEPNLTAMSGETASFLAGGE-------------------------FVPT 263 Query: 322 VLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VL I + ++ EVSE + VN +P+ R+ADT VEL SG + V+ GL++ + Sbjct: 264 VLDNNLINIHVKPEVSELSLQGAVQVNGIAVPAVSTRRADTVVELASGQSFVIGGLIRRN 323 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSV 436 + P L +IPILGALFR+S F +EE+E+ I TP++V+P +S P D + Sbjct: 324 VNNDISAFPWLGRIPILGALFRSSSFQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAP 383 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 + + A + + KG +GFI + Sbjct: 384 A----------LGTPPRARAAISTDAPSVKGDLGFIIE 411 >gi|237800794|ref|ZP_04589255.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023652|gb|EGI03709.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] Length = 432 Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 124/436 (28%), Positives = 198/436 (45%), Gaps = 37/436 (8%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G I + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I + Sbjct: 26 GAEGTIDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKTAGQTSLIALDS 85 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 +G++ L + + A + L+ S R+ + V+ G V+ + ++ L Sbjct: 86 EGRETAALSLAVSSGTAAVTRPLKALHPQSRARISASGNRVIASGSVQDVGEATDLNAL- 144 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + +N AG QV ++V AEV R L + G + ++ Sbjct: 145 ---------LSSEGQNFQSSVNSATYAGAAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 195 Query: 225 GPSKSFAADFGGKFVSEGGD---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + G S + + +L AL+ + LAEP +TA++ Sbjct: 196 TFSFGLLTGGSLAADAASGASNVISAGLTSGNVNIDAMLEALQSNGVLEVLAEPNITAMT 255 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS + Sbjct: 256 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 314 Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 N +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L Sbjct: 315 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 374 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FR+ RF R ETE+ I TP+LV+PV R + P D Sbjct: 375 FRSKRFQRNETELVILITPYLVEPVKERVAATPLDKQRATS------------------- 415 Query: 458 SEVEGQNYKGAIGFIY 473 + G GA GF Sbjct: 416 TASAGPRSGGAFGFYM 431 >gi|269105132|ref|ZP_06157826.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Photobacterium damselae subsp. damselae CIP 102761] gi|268160582|gb|EEZ39081.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Photobacterium damselae subsp. damselae CIP 102761] Length = 442 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 115/426 (26%), Positives = 192/426 (45%), Gaps = 38/426 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 +I+I V +++ + V ++ V +SDP AD V + +FGK +G Sbjct: 13 IISIYSVIASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIG 72 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 N+ + ++G ++ N +++ + + ++ + D+NI + + VVL G V Q Sbjct: 73 HTNLFIFDNEGNELANRKVIVNKSLREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQ 132 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKV 200 + T LS+ + N + ++N + + QV +K+ Sbjct: 133 VKDEINNIVGTLLSKKSNDFNFNLETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKL 192 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +IAEV L+QIG Q++ G + G + +F +V+ Sbjct: 193 SIAEVSHSFLEQIGVQYNSIGHAPGVFVNPLTNFSAS-----------------DILSVI 235 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 A+ + LAEP L+ ISG+SASF GG+ T+ + T+VT ++GV L Sbjct: 236 TAIGNDGIGQVLAEPNLSVISGESASFLVGGELPVVTIVDNG--TNVTYKEFGVKLELLA 293 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 V +I L + EVS + D+P+ + R+A TTVEL G + VL GLL + Sbjct: 294 KVRKDDKITLSLMPEVSSLDTQYSNDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTED 353 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 ++ +P + IP+LGALFRNSR R +TE+ I AT LV+P+ + P Sbjct: 354 KERLNKVPYIGDIPVLGALFRNSRTERNKTELIIVATVNLVQPIHPSQVQLPT--IRKTT 411 Query: 439 DAKAFF 444 FF Sbjct: 412 TLDRFF 417 >gi|326797327|ref|YP_004315147.1| type II and III secretion system protein [Marinomonas mediterranea MMB-1] gi|326548091|gb|ADZ93311.1| type II and III secretion system protein [Marinomonas mediterranea MMB-1] Length = 464 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 115/445 (25%), Positives = 208/445 (46%), Gaps = 18/445 (4%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEAN--AAVINISDVEIGKGKKISIGLNKVIILQVPV 64 F T+ ++ S + A + A+ + + E+ ++ + +N+ +L +P Sbjct: 6 YFLTLFAVCSVQSTLAFATYDVDQPADNNSRIAESRFEEVAVSGQVKLHVNQGTLLNLPK 65 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 VL+++P A + SP +++F K G + + + ++ + + D+ L Sbjct: 66 AASKVLIANPEVASFQMPSPDNVFVFAKAPGDTTLYALDENNDVIIAVTLTSGYDLEGLT 125 Query: 125 MTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK- 182 + + + + ++V +D +++ G V+T Q +++ + E++L S Sbjct: 126 RQVAKEVPGTEVQVGPATDKGLIVRGTVQTPQQAKQVISSVESYLGASTSANGRGGRGGQ 185 Query: 183 -----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--G 235 +++N L +A QV + V I EV R + +GF ++ + Sbjct: 186 SNQSLRIVNQLKVALSSQVNISVRIVEVSRSLTHALGFSWDTLFDNNTGFIRNGSSLFDA 245 Query: 236 GKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 V +G S+ + VL AL LAEP LTA+SG++A F GG+ Sbjct: 246 STGVFDGSGISLGVLGGTIGDVGGVLSALSNDGMASILAEPNLTAMSGETAGFAVGGEVP 305 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPS 350 V + + ++ YGV++ TPT+LSP RI L I EVS+ N +P+ Sbjct: 306 I--VIQTNNSVTIEYKQYGVIMRMTPTLLSPNRISLHIAPEVSDLSDDGSVVLNDTTIPA 363 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++VR+A+TTVEL SG + LAG+L+ + Q G+P L IP+LG +F +EETE+ Sbjct: 364 FKVRRANTTVELASGQSFALAGMLRSSVSQTVSGVPGLRSIPVLGRMFETEINQKEETEL 423 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYS 435 I AT ++V+P + +L P S Sbjct: 424 VIIATAYIVEPTSANNLQSPAQGIS 448 >gi|312621080|ref|YP_003993808.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp pilus assembly [Photobacterium damselae subsp. damselae] gi|311872801|emb|CBX86892.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Photobacterium damselae subsp. damselae] Length = 438 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 115/426 (26%), Positives = 192/426 (45%), Gaps = 38/426 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 +I+I V +++ + V ++ V +SDP AD V + +FGK +G Sbjct: 9 IISIYSVIASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIG 68 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 N+ + ++G ++ N +++ + + ++ + D+NI + + VVL G V Q Sbjct: 69 HTNLFIFDNEGNELANRKVIVNKSLREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQ 128 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKV 200 + T LS+ + N + ++N + + QV +K+ Sbjct: 129 VKDEINNIVGTLLSKKSNDFNFNLETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKL 188 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +IAEV L+QIG Q++ G + G + +F +V+ Sbjct: 189 SIAEVSHSFLEQIGVQYNSIGHAPGVFVNPLTNFSAS-----------------DILSVI 231 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 A+ + LAEP L+ ISG+SASF GG+ T+ + T+VT ++GV L Sbjct: 232 TAIGNDGIGQVLAEPNLSVISGESASFLVGGELPVVTIVDNG--TNVTYKEFGVKLELLA 289 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 V +I L + EVS + D+P+ + R+A TTVEL G + VL GLL + Sbjct: 290 KVRKDDKITLSLMPEVSSLDTQYSNDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTED 349 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 ++ +P + IP+LGALFRNSR R +TE+ I AT LV+P+ + P Sbjct: 350 KERLNKVPYIGDIPVLGALFRNSRTERNKTELIIVATVNLVQPIHPSQVQLPT--IRKTT 407 Query: 439 DAKAFF 444 FF Sbjct: 408 TLDRFF 413 >gi|56477528|ref|YP_159117.1| outer membrane channel protein [Aromatoleum aromaticum EbN1] gi|56313571|emb|CAI08216.1| probable outer membrane channel protein,probably involved in pilus assembly [Aromatoleum aromaticum EbN1] Length = 566 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 127/535 (23%), Positives = 217/535 (40%), Gaps = 91/535 (17%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---- 77 + + P + A VEI ++I + K +++ V V +L+ +P A Sbjct: 35 TSSATPRVAVATTNGSPCGRVEIAPM--VTIPVGKSSVIRPEVPVTRILLGNPDNAQAAR 92 Query: 78 ---------------------------DVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 DV++ SP +YL GK+VG NV+L+ G Sbjct: 93 PSAEPAKDDKGGQQAKQSDGRPGVAQVDVLLLSPNEIYLLGKSVGSTNVVLVDRSGGC-T 151 Query: 111 NLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 LD+ + D+ ++ L + D I+V D++VL G V RAVE++ ++ Sbjct: 152 ALDVTVAMDVTSVQGALTALLPDETGIKVSSAYDSLVLTGTVSDATKVDRAVEIASAYVR 211 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------------ 217 + ++ +V+N+L++ QV L+V +AEV + ++ + G Sbjct: 212 DGDGGENGRNA--RVLNMLSVGAPQQVMLEVKVAEVSKAVMDRFGIDFSRAYAAGDGTMI 269 Query: 218 ---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL-------------- 260 S P + G V G S+ + + Sbjct: 270 RFLSGVFGGKSPVGGQVSGTVGARVGGGIVDSISNASGTSAITAPIGDATIGGDATKVPL 329 Query: 261 -----------HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307 A + ++ LAEPT+ AISGQ SF +GG+ + G +V Sbjct: 330 ISGSNSTLIGVDAQKSDGLVKILAEPTVMAISGQEGSFLAGGKIFIPVSQNDGGTRTVTL 389 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADT 358 ++GV + FTPTVL GRI L ++ EVSE +PS+ R+A T Sbjct: 390 EEKEFGVSVKFTPTVLEGGRINLAVRPEVSELNREGVGLTAPGVNGLAILPSFTTRRAFT 449 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TV+L G + + GL+K++ + P L ++P++GALFR++ F + +E+ TP L Sbjct: 450 TVQLRDGQSFAIGGLIKNNTTTNIKAFPFLGELPVIGALFRSTEFQTDRSELVFVITPRL 509 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGF 471 VKP+ D + P D+Y + + ++ + G+ GF Sbjct: 510 VKPL-PEDYALPTDNYVEPSRSDVIWRGKLEGKGPAPADHPDLLPGEENSARGGF 563 >gi|167836689|ref|ZP_02463572.1| RhcC2 [Burkholderia thailandensis MSMB43] Length = 460 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 128/486 (26%), Positives = 223/486 (45%), Gaps = 43/486 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 +R T T+ L P G +++ +L Sbjct: 5 LRADLHTCMTIACAALVGFVPGA----------------HVHADPVGPVLTVAAGGGEML 48 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 ++P V ++DP ADV V +P+++++ GK G + +G + + +L I++ D Sbjct: 49 KLPEPAGAVFIADPDVADVHVPTPQSVFVLGKKAGTTTLFALGSNNRTILRETIVVNADT 108 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L+ L + ++ + ++++ G V + D+ V+ + +L + Sbjct: 109 PTLQRILDARFPNLHLTLTSAPGSLMVAGHVPSPSDADAVVQTLKPYLHEK--------- 159 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAAD 233 + ++N + +A QV L+V + E+ R+I +Q+G S G+S F Sbjct: 160 -ETLVNRMTLARPIQVHLRVRVTEIDRNITQQLGINWSAIGASGNFVGGLFNGRTLFDPT 218 Query: 234 FGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 +S G FSV G R+S + VL AL++ I LAEP LT +SG++ASF +GG Sbjct: 219 SRLFNLSPTGAFSVLGGFHTSRYSVDGVLDALDQEGLITMLAEPNLTTMSGETASFLAGG 278 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGD 347 + +TGA ++ +GV L FTPTVL+ RI L+++ EVSE + N Sbjct: 279 EFPIPVSQDTTGAITIEFKPFGVSLDFTPTVLADNRISLKVRPEVSEIDPVNSVTSNGIR 338 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P+ VR+ +TTVEL SG + + GLL+ + +P L+++P+LG LF + + ++ Sbjct: 339 VPALTVRRVETTVELSSGQSFAIGGLLQSKTSDVLAELPGLARLPVLGKLFSSKNYLNDK 398 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 TE+ + TP++V+PV +L D + + R I + G Sbjct: 399 TEVVVIVTPYVVQPVGPGELRDALDSVTQPSSDIEYVLQRAIGIDPLSG----DLPRLVG 454 Query: 468 AIGFIY 473 A GFIY Sbjct: 455 AAGFIY 460 >gi|307293450|ref|ZP_07573296.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] gi|306881516|gb|EFN12732.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] Length = 499 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 118/428 (27%), Positives = 203/428 (47%), Gaps = 26/428 (6%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 I + + ++ +P + DV++ DP DV V S +YL K G+ V +GK Sbjct: 46 AILLSVGGSKVINLPAKMSDVVIGDPDVVDVHVRSQNQLYLIAKKAGETTVFATAINGKV 105 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + + + + ++ ++ L+ + ++ I V ++ V+L G + +D+ A L++ F+ Sbjct: 106 LFSGTVRVGNNLTSIDDMLKLAMPNAEIAVNKMNGMVLLTGTIAAPEDAAEAERLTQAFV 165 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------- 221 + V++ L A QV L+V IAEV +D+ +IG Sbjct: 166 GKEVT----------VVSRLRTATPLQVNLQVKIAEVSKDVGHKIGMNWKSQDLTGGKWA 215 Query: 222 ------SSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + + F ++GG + + VL E + TLA+ Sbjct: 216 GGIGGGTRDAITFNSGGGGTFNFTADGGYSLAGVARVLGLDLGAVLDLAESSGLATTLAQ 275 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P LT++SG++ASF +GG++ Y + + G S+ YGV L FTPTVL+ GRI LR++ Sbjct: 276 PNLTSLSGETASFLAGGEYPYTVSNGTQG-NSIEFKQYGVQLAFTPTVLADGRISLRVRP 334 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 V + + +P+ R R A+TTVEL SG ++AGLL +D +P + +PIL Sbjct: 335 TV-SSLDFSVSSSVPALRSRTAETTVELGSGQAFMIAGLLNNDTANNINKVPGIGNLPIL 393 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 G+LF++ F R ETE+ I TP+LVKP+ D+ P D + ++ + F + Sbjct: 394 GSLFKSRNFQRHETELVIVVTPYLVKPMNASDVRLPTDGFRNANEGQGLFLQQGQDGVSG 453 Query: 455 KEASEVEG 462 + Sbjct: 454 ARSPMPSR 461 >gi|123443821|ref|YP_001007792.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090782|emb|CAL13664.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 453 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 106/417 (25%), Positives = 192/417 (46%), Gaps = 33/417 (7%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 + + + + +++ ++ V VS AD + ++ ++ K G A IL Sbjct: 30 ANAEPVYLSTGESYMIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQ 89 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 + + IL++ I +R +S+I + + D+ +L G V T + + + Sbjct: 90 NHHPIKKSAILVDNTITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASII 149 Query: 165 ETFLSQSGRNQYANSSSK-------------KVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + + +V+N + + G +QV +K+TIAEV +D + Sbjct: 150 GEAIGSEKTIASNSKKDSDGNSQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSE 209 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 IG S G+ SG + F + KF ++G ++HA+ + R Sbjct: 210 NIGMDWSTIGNFSGSFQFFKPNGLNKFNAKG-------------ISALVHAINDDSIARV 256 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP L+ +SG+SASF GG+ V+++ +T +T +G+ L+ V + RI ++ Sbjct: 257 LAEPNLSVLSGESASFLVGGELPL--VNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIK 314 Query: 332 IQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + EVS PS+R RKA TT+EL G + +L GL+ ++ + IP + Sbjct: 315 LDEEVSSVDKVFNIDGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFI 374 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 IPILGA FRN+ + +TE+ + AT LV+PV+ +++ P ++ + FF Sbjct: 375 GDIPILGAFFRNAETRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFFN 429 >gi|194335913|ref|YP_002017707.1| type II and III secretion system protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308390|gb|ACF43090.1| type II and III secretion system protein [Pelodictyon phaeoclathratiforme BU-1] Length = 510 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 106/502 (21%), Positives = 197/502 (39%), Gaps = 66/502 (13%) Query: 9 FTMMSIFLFSSNP--SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 + + L + P ++A P++ + + + + + + L + + + + Sbjct: 15 MSALVALLVGTVPMATMASPEPVRRRDDSYVTVVSEMTAPSIYL-VPLGESRVYRFAQPI 73 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 + V + DP AD ++ + +YL GK +G N+ + +G + + + + R L+ Sbjct: 74 KRVAMGDPKVADYIMLNRFEVYLLGKKMGSTNLAVWDQNGN-LTSSPVQVSRGTTALQAL 132 Query: 127 LRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS----- 180 L+ N I + + +VL G V ++ L ++ S + S+ Sbjct: 133 LKVLFPKENDIHLLALGPALVLSGSVSDALVAESVARLVRSYFGGSVSSGTPESALVGTD 192 Query: 181 ------------------------------------SKKVMNLLNIAGEDQVTLKVTIAE 204 ++ V+NLL + QV L+V IA+ Sbjct: 193 SKPFTGIIEEMSKDVVFSKTESHSKETTTHGGESDSTRGVVNLLKVRDSQQVRLEVCIAQ 252 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V R ++ +G + FVS ++ + + A Sbjct: 253 VSRTFIESLGISFF-----KTSGDIQGSTLLSGFVSNATLNNLLLGRLGQANGIKMVADR 307 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGV 314 + + + LAEPT+ +SG+ F GG+ ++ +D YGV Sbjct: 308 KPSLFKVLAEPTIVTMSGKEGFFLVGGKIYVPVRVIDYSPINLQEYDKYYISYKEYLYGV 367 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVL 370 L F P VL GRI L++ +EVSEP +P +++ T V++ G +V+ Sbjct: 368 GLRFMPVVLDAGRISLKVVSEVSEPDTESATSGTKANLPLFKISTVSTNVQMNEGENLVI 427 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 GL D+ + +PLLS+IPILGALFR+++ N E+TE+ + P LVK + P Sbjct: 428 GGLKLDNFANAIDSVPLLSEIPILGALFRDTKKNAEKTELMVIIRPTLVK-GSATMPELP 486 Query: 431 DDHYSVEDDAKAFFFNRVNKIY 452 D + F ++ Sbjct: 487 TDRVIPPTRKELFLDGKLEGSP 508 >gi|330876206|gb|EGH10355.1| type III secretion component [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 437 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 124/436 (28%), Positives = 199/436 (45%), Gaps = 37/436 (8%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I + Sbjct: 31 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 90 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 +G++ L + + A + L+ S R+ V+ G V+ + ++ L Sbjct: 91 EGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 149 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + +N AG QV ++V AEV R L + G + ++ Sbjct: 150 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 200 Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S G + S + + +L AL+ + LAEP +TA++ Sbjct: 201 TFSFGLLTGGGLAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 260 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS + Sbjct: 261 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 319 Query: 342 G----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L Sbjct: 320 TSTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 379 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FR+ RF R ETE+ I TP+LV+PV R ++ P D Sbjct: 380 FRSKRFQRNETELVILITPYLVEPVKARVVATPLDKQRAAS------------------- 420 Query: 458 SEVEGQNYKGAIGFIY 473 + G GA GF Sbjct: 421 TASAGPRSGGAFGFYM 436 >gi|330953268|gb|EGH53528.1| type III secretion component [Pseudomonas syringae Cit 7] Length = 438 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 127/463 (27%), Positives = 205/463 (44%), Gaps = 37/463 (7%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 +S + L A N + G + + + + +L V V+V++P A Sbjct: 5 ASVIRLLFLALSALLIAGGANAETIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIA 64 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 D+ V SP +Y+FGK GQ ++I + +G++ L + + A + L+ S R Sbjct: 65 DLQVVSPGVIYVFGKTAGQTSLIALDSEGRETATLSLAVSSGTAAVSRPLKALHPQSQAR 124 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 + V+ G V+ + ++ L + + +N AG QV Sbjct: 125 INASGSRVIASGAVQDVGEATDLNAL----------LSTEGQNFQSTVNSATYAGSAQVN 174 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD---FSVKGVLDRF 254 ++V AEV R L + G + ++ S + G S Sbjct: 175 IRVRFAEVSRSELLRYGVNWNALFNNGTFSFGLLTGGSLAADAASGASNVISAGLTSGNV 234 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + + +L AL+ + LAEP +TA++GQ+ASF +GG+ + V + + YGV Sbjct: 235 NIDAMLEALQNNGVLEVLAEPNITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGV 293 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVL 370 L F+PT+L GRI L+++ EVS + N +PS+RVR+ADT VE+ SG T + Sbjct: 294 SLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAI 353 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGL + + Q + +P+L +PILG+LFR+ RF R ETE+ I TP+LV+PV R + P Sbjct: 354 AGLFQRESSQDMDKVPMLGDMPILGSLFRSKRFQRNETELVILITPYLVEPVKERVAATP 413 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 D + G GA GF Sbjct: 414 LDKQRAAS-------------------TAAAGPRSGGAFGFYM 437 >gi|253701800|ref|YP_003022989.1| type II and III secretion system protein [Geobacter sp. M21] gi|251776650|gb|ACT19231.1| type II and III secretion system protein [Geobacter sp. M21] Length = 451 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 109/431 (25%), Positives = 182/431 (42%), Gaps = 47/431 (10%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 ++ +N+ ++L + + V ++D DV + + GK +G N+I+ + + Sbjct: 33 TVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGSTNLIVWEENNENP 92 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 D+ + D +E +R + + +I V+ DTVVL G V ++A E+++ + + Sbjct: 93 TFFDVRVVGDREAIESQIRDYAPNDDISVQYAQDTVVLSGKVANEMTGKKAEEIAKAYSA 152 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 KV+N + + QV L+V +A+V R LK++G + G ++ + Sbjct: 153 -------------KVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGISAMVKGRTAEGFMN 199 Query: 230 FAADFGGKFVSEGGD---------------------------FSVKGVLDRFSFETVLHA 262 G F+V VL A Sbjct: 200 LVGAPSGTSSVTNSSATRFTSTEASGIAGSIPGLGSFDPLDAFNVGVSYFPAGIGAVLQA 259 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTP 320 L + LAEP L SG+ +F +G + Y + S+ G +S+ GV L F P Sbjct: 260 LSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIIFETVGVKLKFKP 319 Query: 321 TVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 VL G I L+I EVS + P R T VEL G +++LAGLL+++ Sbjct: 320 QVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGESLILAGLLQEEQI 379 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED 438 + IPLL IPILGALFR+S+ + E ++ TP +VKP P D + + Sbjct: 380 KTMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKPTPAGVATKLPTDAVTPAE 439 Query: 439 DAKAFF--FNR 447 + + R Sbjct: 440 EKGYDWIPLGR 450 >gi|289624387|ref|ZP_06457341.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646614|ref|ZP_06477957.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868629|gb|EGH03338.1| type III secretion component [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 429 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 122/436 (27%), Positives = 197/436 (45%), Gaps = 37/436 (8%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I + Sbjct: 23 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 82 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 +G++ L + + A + L+ S R+ V+ G V+ + ++ L Sbjct: 83 EGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + +N AG QV ++V AEV R L + G + ++ Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192 Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + S + + +L AL+ + LAEP +TA++ Sbjct: 193 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 252 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS + Sbjct: 253 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 311 Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 N +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L Sbjct: 312 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 371 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FR+ RF R ETE+ I TP+LV+PV R ++ P D Sbjct: 372 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS------------------- 412 Query: 458 SEVEGQNYKGAIGFIY 473 + G GA GF Sbjct: 413 TASAGPRSGGAFGFYM 428 >gi|330985203|gb|EGH83306.1| type III secretion component [Pseudomonas syringae pv. lachrymans str. M301315] Length = 429 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 121/436 (27%), Positives = 197/436 (45%), Gaps = 37/436 (8%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G + + + + +L + V+V++P AD+ V SP +Y+FGK GQ ++I + Sbjct: 23 GAKGTVDLAIGEGRVLHFSAPLDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 82 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 +G++ L + + A + L+ S R+ V+ G V+ + ++ L Sbjct: 83 EGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + +N AG QV ++V AEV R L + G + ++ Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192 Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + S + + +L AL+ + LAEP +TA++ Sbjct: 193 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 252 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS + Sbjct: 253 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 311 Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 N +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L Sbjct: 312 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 371 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FR+ RF R ETE+ I TP+LV+PV R ++ P D Sbjct: 372 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS------------------- 412 Query: 458 SEVEGQNYKGAIGFIY 473 + G GA GF Sbjct: 413 TASAGPRSGGAFGFYM 428 >gi|87308911|ref|ZP_01091049.1| probable type II secretion system protein [Blastopirellula marina DSM 3645] gi|87288254|gb|EAQ80150.1| probable type II secretion system protein [Blastopirellula marina DSM 3645] Length = 540 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 114/497 (22%), Positives = 205/497 (41%), Gaps = 55/497 (11%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK----------- 49 MR L T +++ L + + + I A + +S +K Sbjct: 3 MRNLSTALAT-LAMILSAGGIAFGQAQEILPAPNQLEQLSSPNAATLQKQFDLIDEVLEP 61 Query: 50 ---ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI--GH 104 S+ ++ I++ V V +++P +V SP M + G VGQ + L Sbjct: 62 ELIFSLMTSQSKIVRTKSPVFRVAITNPAVVEVNEFSPTEMEVIGSAVGQTTMTLWFNNA 121 Query: 105 DGKQ--------MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 DG + N D + + L+ + S +++ ++D +++ G R ++ Sbjct: 122 DGTVSTLRYLIIVSNDDNRADLEYGKLQAHINEMFPYSRVQLFPIADKLIVRGQARDSKE 181 Query: 157 SQRAVELSETFLSQSGRNQYANSS----------------SKKVMNLLNIAGEDQVTLKV 200 + + + N + + + ++NLL + GE QV LKV Sbjct: 182 AAEILAVIGDQAVNQNGNISGSGTVNVGSVARLPDAEDLETTSLINLLEVPGEQQVMLKV 241 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +AE+ R +++G S+ S + + GG ++ +LD E + Sbjct: 242 RVAELSRQAARELGMDFSVMEESFSIAHTIM----------GGAGNLSAILDGGDVELFI 291 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHF 318 A + + LAEPTL +SGQSASF +GG+ GA S + +G + F Sbjct: 292 RAFSSNGSAKILAEPTLMTLSGQSASFIAGGEFAVPTAVGVGGIGAVSTSFRGFGTQVQF 351 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 PTV+ I L + VS ++ +P +R A TTV+L G + +AGL++D+ Sbjct: 352 MPTVMDKDMIRLSVAPSVSSINQSLSVDGVPGLDIRGAVTTVDLREGQWLAIAGLIQDEQ 411 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSV 436 + + +PLL IP +GA F + R ETE+ I +P LV P+ + P + Sbjct: 412 EASRSRLPLLGDIPYVGAAFGSQTTKRIETELVILVSPELVHPMERDQVPLYLPGMEVTE 471 Query: 437 EDDAKAFFFNRVNKIYG 453 + + F ++ + G Sbjct: 472 PTNKEFFLHQQIEGLPG 488 >gi|197106489|ref|YP_002131866.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium zucineum HLK1] gi|196479909|gb|ACG79437.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium zucineum HLK1] Length = 438 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 102/424 (24%), Positives = 179/424 (42%), Gaps = 21/424 (4%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 E + I + +K + ++ ++VS P A V S R+ Y+ G G N++ Sbjct: 31 RSEPAPRRSIHVPRDKSLSFRLAQPAARIVVSQPEIAKVTATSDRSFYVQGLEFGSTNML 90 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + G G+ + LDI + D L+ L + +RV + + ++L G V +A Sbjct: 91 VYGPGGRLLEVLDIRVGYDAEGLQQDLAAAFPNEPLRVRNLGEALMLTGEVTDTGVQYKA 150 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 +++ + + +++ +++ QV L+V + E R L+ IG + +I Sbjct: 151 EAIAQRY------------APDGLISRVSVRASQQVVLEVRVLEATRSALQDIGVEGAIG 198 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 +S + + G + G + +L ALE +RTLA P L AI Sbjct: 199 NNSWAVAFG---NGLIGASPAAGALGISGGWGDTRIDLMLTALEEKGVVRTLARPNLVAI 255 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 GQ A+F +GG++ Y V S+ YGV L FTP V G I L ++ EVS+ Sbjct: 256 PGQKATFHAGGEYPYP-VPQRDDLISLEFRKYGVELTFTPVVQDNGLIRLDVEPEVSQLD 314 Query: 341 IGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +P VR+ TTVEL G ++ + GL + + +P + +P+LG+ Sbjct: 315 FTNSLRVQGFTVPGLIVRRTHTTVELKPGESLAIGGLFQREYTNALRQVPGIGDVPVLGS 374 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 LFR++R+ + ETE+ + TP + R + Sbjct: 375 LFRSARWKKAETELVVIVTPKFASTADMAAAEAMRTPPGREPTTPDLLLRGRALDKSITE 434 Query: 456 EASE 459 E + Sbjct: 435 EGAP 438 >gi|320324504|gb|EFW80581.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320328376|gb|EFW84379.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. race 4] Length = 429 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 122/436 (27%), Positives = 197/436 (45%), Gaps = 37/436 (8%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G + + + + +L V V+V++P AD+ V SP +Y+FG+ GQ ++I + Sbjct: 23 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGQAAGQTSLIALDS 82 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 DG++ L + + A + L+ S R+ V+ G V+ + ++ L Sbjct: 83 DGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + +N AG QV ++V AEV R L + G + ++ Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192 Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + S + + +L AL+ + LAEP +TA++ Sbjct: 193 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 252 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS + Sbjct: 253 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 311 Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 N +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L Sbjct: 312 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQHESSQDMDKVPMLGDMPILGNL 371 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FR+ RF R ETE+ I TP+LV+PV R ++ P D Sbjct: 372 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS------------------- 412 Query: 458 SEVEGQNYKGAIGFIY 473 + G GA GF Sbjct: 413 TASAGPRSGGAFGFYM 428 >gi|284048526|ref|YP_003398865.1| type II and III secretion system protein [Acidaminococcus fermentans DSM 20731] gi|283952747|gb|ADB47550.1| type II and III secretion system protein [Acidaminococcus fermentans DSM 20731] Length = 590 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 98/461 (21%), Positives = 189/461 (40%), Gaps = 31/461 (6%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A I + +S+ +N ++ + + V +P ADV + S L GK Sbjct: 13 TAAILGMTGQALAATTLSVAVNGSRYMEASG-ITRLAVGNPEIADVRLLSGNDFLLVGKK 71 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G +++ +G++ ++ + A ++ I ++V+M++ V+L G V+ Sbjct: 72 PGSTTLLVWSDNGRE--EYNVFVSGSDAGTAQAIQEAIGYPEVQVQMMNGKVLLRGRVQN 129 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKK-------------VMNLLNIAGEDQVTLKV 200 + A+++++ +L G + K ++++L++ QV L Sbjct: 130 QYEHDSAIKVAQMYLGSGGGTTSTAQAGGKEGTAAQGGTTDSNIIDMLDMTEPTQVRLVA 189 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEGGDFSVKGVLDRF- 254 I E+ K +G Q+ + + + G F + + +G F Sbjct: 190 QIIEINTSAEKDLGIQYWSPTLGDNTTGNSNSTDITRGTPGLFYAGENFYKQRGSFGWFG 249 Query: 255 ----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + L AL + R L+ P++T +SGQ A GG+ S+ G ++ Sbjct: 250 SHLSNLNASLQALVTSGKARILSRPSITTMSGQKAKILIGGRIPIP-TSAGDGQIAIDWR 308 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGG 366 DYGV L P V + +I ++ EVS G N +P+ R+A+ + + SG Sbjct: 309 DYGVKLDIEPVVDADNKITSKVHAEVSTLDYGHSVKENDFSIPAIASREAEAMINVRSGM 368 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+ + GLL + + IPLL IPI+G FR++ R+ E+ I TP LV + Sbjct: 369 TMAIGGLLNSEDSKSVSKIPLLGDIPIIGQFFRHTSTTRDNRELLILITPLLVGDDSPVS 428 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 +S+ + +V+ K ++ + ++ G Sbjct: 429 MSQRMKENYEASERYERNAEKVDVNTPVKPGNDKQERDIWG 469 >gi|50119734|ref|YP_048901.1| hypothetical protein ECA0789 [Pectobacterium atrosepticum SCRI1043] gi|49610260|emb|CAG73703.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043] Length = 478 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 124/452 (27%), Positives = 219/452 (48%), Gaps = 27/452 (5%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T +++ LF++ V + A + E+ + + + +++ +LQ+ Sbjct: 15 TCKRLLAAGLFNAVLPVTLTTMMLPA--TTMAAGVSEVAETNVVHLTVHQGRLLQLDALP 72 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 VLV+DP A + SP ++++ K+VG + + +G + + ++ E D+ L Sbjct: 73 DSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKALGER 132 Query: 127 LRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----------- 174 ++R ++I++E + V++ G V T QD++R ++ + ++S S Sbjct: 133 MKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASAGGQGGGGGGGEKL 192 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 ++ SS KV+N L I Q+ ++V + EV R + ++GF + + S+ + S + Sbjct: 193 PGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMSAGSGS 252 Query: 235 GGKFVSEGGD------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + S R +L A+ + LAEP LTA+SG++A+F Sbjct: 253 RLNLFNATTGRFANPTDSGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETAAFA 312 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---- 344 +GG+ + + + S+ YGV+L TPT+LS RI L I EVSE + Sbjct: 313 AGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQLE 370 Query: 345 -AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS +P+ G LF + Sbjct: 371 GGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFESEST 430 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 ++EETE+ I AT ++V+PV DL P Sbjct: 431 SQEETELVIIATAYVVEPVNAGDLQTPGQGVK 462 >gi|197117446|ref|YP_002137873.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem] gi|197086806|gb|ACH38077.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem] Length = 451 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 113/429 (26%), Positives = 187/429 (43%), Gaps = 45/429 (10%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 ++ +N+ ++L + + V ++D DV + + GK +G N+I+ + + Sbjct: 33 TVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGSTNLIVWEENNDKP 92 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 D+ + D +E +R + +I V+ DTV+L G V ++A E+++ + + Sbjct: 93 TFFDVRVVGDREAIESQIRDYAPKDDISVQYAQDTVILSGKVANEMTGKKAEEIAKAYSA 152 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 KV+N + + QV L+V +A+V R LK++G + G ++ + Sbjct: 153 -------------KVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGLSAIVKGRTAEGFTN 199 Query: 230 FAADFGGK----------FVSEGGDFSVKGVLDRFSFE-----------------TVLHA 262 G F S G+ V + F+ VL A Sbjct: 200 LVGAPSGTSRNTESTPTRFTSTEGNGIVGNIPGIGGFDPLNAFNVGVSYFPAGIGAVLQA 259 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTP 320 L + LAEP L SG+ +F +G + Y + S+ G +S+ GV L F P Sbjct: 260 LSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIVFETVGVKLKFKP 319 Query: 321 TVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 VL G I L+I EVS + P R T VEL G ++VLAGLL+++ Sbjct: 320 QVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGESLVLAGLLQEEQI 379 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED 438 + IPLL IPILGALFR+S+ + E ++ TP +VKP P D + E+ Sbjct: 380 KNMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKPTPAGVATKLPTDAVTPEE 439 Query: 439 DAKAFFFNR 447 + + R Sbjct: 440 EKGYDWIPR 448 >gi|253687068|ref|YP_003016258.1| type II and III secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753646|gb|ACT11722.1| type II and III secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 478 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 126/455 (27%), Positives = 220/455 (48%), Gaps = 27/455 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 + T +++ LF++ V + A +S I ++ + +N+ +LQ+ Sbjct: 12 FRGTCKRLLAACLFNAVLPVTLTTMMLPATTLAAGVSTAPI--TDEVHLTVNQGRLLQLA 69 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 VLV+DP A + SP ++++ K+VG + + +G + + ++ E D+ L Sbjct: 70 DTPDSVLVADPNIASFELPSPGNLFVYAKSVGVTTLYAMDENGNVINAIRLVSEHDLKAL 129 Query: 124 EMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-------- 174 ++R ++I++E + V++ G V T QD++R ++ + ++S S Sbjct: 130 GERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASSGGQGGGGGGG 189 Query: 175 ---QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 ++ SS KV+N L I Q+ ++V + EV R + ++GF + + S+ + S Sbjct: 190 EKLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMSAG 249 Query: 232 ADFGGKFVSEGGD------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + + S R +L A+ + LAEP LTA+SG++A Sbjct: 250 SGSRLNLFNATTGRFSNPTDSGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETA 309 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344 +F +GG+ + + + S+ YGV+L TPT+LS RI L I EVSE + Sbjct: 310 AFAAGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSV 367 Query: 345 ----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS +P+ G LF + Sbjct: 368 QLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFES 427 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 ++EETE+ I AT ++V+PV DL P Sbjct: 428 EATSQEETELVIIATAYVVEPVNAGDLQTPGQGVK 462 >gi|145299828|ref|YP_001142669.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp. salmonicida A449] gi|142852600|gb|ABO90921.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp. salmonicida A449] Length = 461 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 112/457 (24%), Positives = 192/457 (42%), Gaps = 38/457 (8%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + +L V+D V++ V S + + ++G+ VG+ ++++ D Sbjct: 14 AAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTAQD 73 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+ + + + + D+A L+ R+ S + +V+ G V + + + + E Sbjct: 74 GRTLGHYRVQVVADLAPLKQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVE 133 Query: 166 TFLSQSGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLKVT 201 F + V+N L +AG DQ+ + V Sbjct: 134 AFAKGIQPQGVPSGPVAPAQPQSGNQDEGAAVAGGGSGQYANVINQLRLAGSDQINISVR 193 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 I E++R +Q+G + S G G +F S G D ++ Sbjct: 194 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 249 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + + LAEP LTA SG++A+F SGG+ + + G + +G+ L TPT Sbjct: 250 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 308 Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 +L RI L + EVS E + + +P R+ TT+EL G + LAGL++ Sbjct: 309 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 368 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436 Q E +P L +IP L F ++ F +E+E+ I AT LV+P LS P DHY Sbjct: 369 RNQSSEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 428 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + FF + G E + G G+ Y Sbjct: 429 PSRFERRFFTDM----GSTERPGAQATRLFGNYGYSY 461 >gi|251789646|ref|YP_003004367.1| type II and III secretion system protein [Dickeya zeae Ech1591] gi|247538267|gb|ACT06888.1| type II and III secretion system protein [Dickeya zeae Ech1591] Length = 474 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 124/432 (28%), Positives = 209/432 (48%), Gaps = 32/432 (7%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 + + + +I +I + +N+ +LQ+ VL++DP A + SP +++F Sbjct: 27 SATTLPVAAVTQIEATSEIRLNINQGRMLQLDHIPDSVLIADPAIASFELPSPGNVFVFA 86 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGM 150 K VG + + DG+ + + +++E D+ L+ LRR D+ I++E V + V++ G Sbjct: 87 KGVGNTTLYAMDVDGQVVSAIHLVVEHDLDALKERLRREFPDAQIQLEASVPNGVIVRGS 146 Query: 151 VRTIQDSQRAVELSETFLSQSGRN--------------QYANSSSKKVMNLLNIAGEDQV 196 V T QD+++ ++ + ++ S + ++S+S V+N L + Q+ Sbjct: 147 VETPQDAKKVIDSVQAWVGASASSRGSAGGGGGGGSAMPASSSTSPNVVNQLKVRTPSQI 206 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----------FS 246 ++V + EV R + ++GF + + + F + F S + Sbjct: 207 NIRVRVVEVSRKLTHELGFNWDSSLNRGRNTIGFGSGALSNFFSATSNTFSREAGSASLG 266 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 S T+L AL LAEP LTA+SG++A+F +GG+ + + + S Sbjct: 267 YNYTGSDGSLGTLLSALNSQGMASVLAEPNLTAMSGETAAFAAGGEVPIVLI--TGNSVS 324 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVE 361 + YGV+L TPT+LS RI L I EVSE + +P+ VR+ADTTVE Sbjct: 325 IDYKSYGVILRMTPTLLSANRISLHIAPEVSELTSVGSVQLEGGSTIPALTVRRADTTVE 384 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L SG + LAG+L+ Q G+P LS IP+LG F + EETE+ I AT ++V P Sbjct: 385 LASGQSFALAGMLRSSNSQTVAGVPGLSGIPLLGRAFERESTSSEETELVIIATAYVVAP 444 Query: 422 VAMRDLSRPDDH 433 V+ L P Sbjct: 445 VSAGTLQTPGQG 456 >gi|148259497|ref|YP_001233624.1| type II and III secretion system protein [Acidiphilium cryptum JF-5] gi|146401178|gb|ABQ29705.1| type II and III secretion system protein [Acidiphilium cryptum JF-5] Length = 491 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 123/466 (26%), Positives = 194/466 (41%), Gaps = 37/466 (7%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 P + A + E + + ++I ++ + +V V+DP V S T+ Sbjct: 44 PAAASPARHATMRPAEAARARGLTIEQGSGRLITLKGSAANVFVADPGVVAVRPASAHTL 103 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIE---RDIAHLEMTLRRFIADSNIRVEMVSDT 144 ++FG G V + G + L + + A + R + + + ++ Sbjct: 104 FVFGTAPGFTTVAVTDAQGHAVATLHVAVTPKTYPAAAIRAGATRSAPGARLSISSAANG 163 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 VV+ G V T + ++ + KV+N + QV LKV IA+ Sbjct: 164 VVVRGNVPTPVQDYQIMQQAHLIAGTGA----------KVVNQTEVRLPQQVALKVRIAQ 213 Query: 205 VRRDILKQIGFQHSITGSS-------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 + R I +Q+G G+ G S + G ++ + + + Sbjct: 214 MSRTITQQLGINWQSAGNGISVGKFLFGFSALDVLNGSSPATPAAGSYNAGLSVGGGAID 273 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 +VL AL LAEPTLTA+SGQSASF GG V G +V +GV L Sbjct: 274 SVLDALNSDNLAHILAEPTLTALSGQSASFIDGGSFPVP-VPGQNGQVTVQYKKFGVQLK 332 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV--------NAGDMPSYRVRKADTTVELPSGGTIV 369 F P VL G I L +Q VS P + +PS + A TTV + SG T+ Sbjct: 333 FRPVVLDNGSIILHVQPTVSSPTTQNAFQIAVAGTSIVVPSLSTQSASTTVVIGSGQTLA 392 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLS 428 +AGLL + Q + +P L +P+LGA FR+ +NR+E E+ I TP+LVKPV L Sbjct: 393 IAGLLSNSSNQTDKSVPGLGDMPVLGAAFRDDNYNRQEQELVILVTPYLVKPVNNAGQLM 452 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 PD+ +S + + +R + + G GFI + Sbjct: 453 TPDEGWSPPNQIQRIVLHRDSGGARREIVLP-------GQAGFILR 491 >gi|261820214|ref|YP_003258320.1| type II and III secretion system protein [Pectobacterium wasabiae WPP163] gi|261604227|gb|ACX86713.1| type II and III secretion system protein [Pectobacterium wasabiae WPP163] Length = 475 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 126/452 (27%), Positives = 217/452 (48%), Gaps = 30/452 (6%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T ++ LF++ V + P A V ++ + +++ +L + Sbjct: 15 TCKRLLIASLFNAVLPVMLMSPAATQAAGV-----SVAPVTDEVHLTVHQGRLLHLDALP 69 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 VLV+DP A + SP ++++ KNVG + + +GK + + ++ E D+ L Sbjct: 70 DSVLVADPNIASFELPSPGNLFVYAKNVGTTTLYAMDENGKVINAIRLVSEHDLKALSER 129 Query: 127 LRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ---------- 175 ++R ++I++E + V++ G V T QD++R ++ +T+++ S Sbjct: 130 IKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQTYINASSNGAQGGGGGGDQL 189 Query: 176 -YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 ++ +S KV+N L I Q+ ++V + EV R + ++GF + + S+ + + + Sbjct: 190 PGSSETSGKVVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTAGSGS 249 Query: 235 GGKFVSEGGD------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + S R +L A+ + LAEP LTA+SG++A+F Sbjct: 250 RLNLFNATTGRFANPTDSGFLNFGRSRLGGLLTAMNQQGMATVLAEPNLTAMSGETAAFA 309 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---- 344 +GG+ + + + S+ YGV+L TPT+LS RI L I EVSE + Sbjct: 310 AGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQLE 367 Query: 345 -AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS IP+ G LF + Sbjct: 368 GGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSGIPMFGRLFESEST 427 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 N EETE+ I AT ++V+PV DL P Sbjct: 428 NHEETELVIIATAYVVEPVNAGDLQTPGQGIR 459 >gi|71733713|ref|YP_274717.1| type III secretion component [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554266|gb|AAZ33477.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 437 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 118/401 (29%), Positives = 191/401 (47%), Gaps = 18/401 (4%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I + Sbjct: 31 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 90 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 DG++ L + + A + L+ S R+ V+ G V+ + ++ L Sbjct: 91 DGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 149 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + +N AG QV ++V AEV R L + G + ++ Sbjct: 150 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 200 Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + S + + +L AL+ + LAEP +TA++ Sbjct: 201 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 260 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS + Sbjct: 261 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 319 Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 N +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L Sbjct: 320 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 379 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 FR+ RF R ETE+ I TP+LV+PV R ++ P D Sbjct: 380 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS 420 >gi|149176581|ref|ZP_01855194.1| putative outer membrane channel for pilus assembly CpaC [Planctomyces maris DSM 8797] gi|148844694|gb|EDL59044.1| putative outer membrane channel for pilus assembly CpaC [Planctomyces maris DSM 8797] Length = 590 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 118/471 (25%), Positives = 193/471 (40%), Gaps = 39/471 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 +R + + L + + P + + E K+ + IL Sbjct: 8 IRVKRLPVLVTLVCSLIALSAYAQDEQPAPPGASEPVVQVSSEKM---KLEVTEKFSKIL 64 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + P ++ V DPT V +P + + G +++ +GK + L+ + D Sbjct: 65 KFPGKIKRVDGFDPTVLSVSALTPNELRIQALVPGVTTLVITDENGK-VYTLETFVSGDA 123 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 HL+ LR S++ V D+VVL G V + VE++E F Sbjct: 124 RHLQAYLRELFPTSSVTAIKVQDSVVLRGWVTEPEAITEMVEIAEQFF------------ 171 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------------S 224 V+N + +AG QV LKV I EV+R ++Q+G S + Sbjct: 172 PNGVLNQMKLAGVQQVLLKVKIMEVQRSKIRQLGVNWLFLNQSGYAYSTPGTLVPITGIN 231 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 P A + + G V F+ + AL++ ++ LAEP L SG+ Sbjct: 232 VPFGGPPALTASQNLISGTSLGFGLVDGSSIFQAFIEALKKEALLKILAEPELVTTSGRP 291 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340 A+ SGG+ V S G ++ ++GV + P VL GR+ L +Q EVSE Sbjct: 292 ANLLSGGEFP-ILVPQSLGTVTIEWREFGVRMEAVPIVLGNGRLRLEVQPEVSERDFSNA 350 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + V +P VR+A+T VE+ G T+V+AGL+ P L ++P++GA FR Sbjct: 351 VQVAGTTVPGLTVRRANTAVEMNFGETMVIAGLISSRKTAETSKTPFLGELPVVGAAFRR 410 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN 449 R+ ETE+ I TP LV P+ + P + D + + + Sbjct: 411 VRYTEGETELVIMVTPELVSPLKSGQVPPGGPGLFTATPTDRELYLDGVLE 461 >gi|330830432|ref|YP_004393384.1| protein transporter, outer membrane secretin (secretin) family [Aeromonas veronii B565] gi|328805568|gb|AEB50767.1| Protein transporter, outer bacterial membrane secretin (Secretin) family [Aeromonas veronii B565] Length = 465 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 38/469 (8%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A ++ + + + +++ + +L V D V++ V S + + ++G+ Sbjct: 6 AILLAMLPLWAAAAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHSPSDQQLLIYGRK 65 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 VG ++++ DG+ + + + + D+A LE R+ S + +V+ G V + Sbjct: 66 VGHTDLVVTALDGRTLGHYRVTVVADLAPLEQLARQHFPQSRLTFSESGGAIVVAGEVTS 125 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSS------------------------SKKVMNLLN 189 + + + E F A S+ V+N L Sbjct: 126 PLQAHEILSMVEGFAKGLQPQSVAQSTVMAPSPQAGNQDEGAAVAGGGSGQYANVINQLR 185 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 +AG DQ+ + V I E++R +Q+G + S G G +F S G Sbjct: 186 LAGSDQINISVRIVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPLERGSWTG 241 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 D ++ AL + + LAEP LTA SG++A+F SGG+ + + G + Sbjct: 242 KKDVVYINAIIDALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEF 300 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSG 365 +G+ L TPT+L RI L + EVS E + + +P R+ TT+EL G Sbjct: 301 KKFGISLELTPTLLDNNRISLTVSPEVSTLSRENSVTIAGVVVPGIETRRTTTTIELADG 360 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AM 424 + LAGL++ Q E +P L +IP L F ++ F +E+E+ I AT LV+P Sbjct: 361 QSFALAGLVRSHRNQNNEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDP 420 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 LS P DHY + FF + G ++ + G G+ Y Sbjct: 421 LSLSTPLDHYRAPSRFERLFFTDM----GSTQSPAAQTTRLFGNYGYSY 465 >gi|149909547|ref|ZP_01898201.1| general secretion pathway protein D [Moritella sp. PE36] gi|149807452|gb|EDM67403.1| general secretion pathway protein D [Moritella sp. PE36] Length = 432 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 113/405 (27%), Positives = 189/405 (46%), Gaps = 38/405 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 K +++ + ++ ++ V ++DP AD V + +FGK +G ++I+ + Sbjct: 11 AQKIVNLSEGEAKTIKSIKEIASVFIADPEIADYQVIDANKVVVFGKKIGSTSIIVFDEN 70 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G + N ++I + + H++ ++ ++++ + V D VVL G+V T Q+ + Sbjct: 71 GDTITNNKLVINKSLVHIQQQIQLKYPNADVTIYNVGDQVVLSGIVATEQEKDDINIIVG 130 Query: 166 TFLSQ---------SGRNQYANSSSK--------KVMNLLNIAGEDQVTLKVTIAEVRRD 208 L++ + ++N + +A QV +K++IAEV Sbjct: 131 ELLNKKSDDYIIQWESTGTDTKYEMEFMKRRHFAGIVNNIEVAAVKQVNVKLSIAEVSHS 190 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L+ G ++S G +SG + F +V+ A+ + Sbjct: 191 FLENFGIEYSSIGQTSGTFVNLVTKFSAS-----------------DIASVITAIADDSV 233 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + LAEP L+ ISG+SASF GG+ TV T T+V +YGV L VL +I Sbjct: 234 GQILAEPNLSVISGESASFLVGGELPVVTVVDGT--TNVLYKEYGVRLSLMAKVLRDDKI 291 Query: 329 GLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 L + EVS + ++P+ + R+A TTVEL G + VLAGLL + + + IP Sbjct: 292 ILSLSPEVSTLDNQYSSGTYNLPALKTRRARTTVELGDGQSFVLAGLLNTEDVESIKKIP 351 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 L IPILGALFR+S R +TE+ I AT LVKP+ + P Sbjct: 352 FLGDIPILGALFRSSSTQRNKTELIIVATVNLVKPIHASQVQLPT 396 >gi|298487093|ref|ZP_07005143.1| type II/III secretion system protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158336|gb|EFH99406.1| type II/III secretion system protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 437 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 124/436 (28%), Positives = 199/436 (45%), Gaps = 37/436 (8%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I +G Sbjct: 31 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALGS 90 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 +G++ L + + A + L+ S R+ V+ G V+ + ++ L Sbjct: 91 EGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 149 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + +N AG QV ++V AEV R L + G + ++ Sbjct: 150 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 200 Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + S + + +L AL+ + LAEP +TA++ Sbjct: 201 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 260 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EVS + Sbjct: 261 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 319 Query: 342 G----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG L Sbjct: 320 TITLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 379 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FR+ RF R ETE+ I TP+LV+PV R ++ P D Sbjct: 380 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS------------------- 420 Query: 458 SEVEGQNYKGAIGFIY 473 + G GA GF Sbjct: 421 TASAGPRSGGAFGFYM 436 >gi|88866586|gb|ABD57354.1| FlpC [Aeromonas salmonicida subsp. salmonicida A449] Length = 479 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 112/457 (24%), Positives = 192/457 (42%), Gaps = 38/457 (8%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + +L V+D V++ V S + + ++G+ VG+ ++++ D Sbjct: 32 AAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTAQD 91 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+ + + + + D+A L+ R+ S + +V+ G V + + + + E Sbjct: 92 GRTLGHYRVQVVADLAPLKQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVE 151 Query: 166 TFLSQSGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLKVT 201 F + V+N L +AG DQ+ + V Sbjct: 152 AFAKGIQPQGVPSGPVAPAQPQSGNQDEGAAVAGGGSGQYANVINQLRLAGSDQINISVR 211 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 I E++R +Q+G + S G G +F S G D ++ Sbjct: 212 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 267 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + + LAEP LTA SG++A+F SGG+ + + G + +G+ L TPT Sbjct: 268 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 326 Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 +L RI L + EVS E + + +P R+ TT+EL G + LAGL++ Sbjct: 327 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436 Q E +P L +IP L F ++ F +E+E+ I AT LV+P LS P DHY Sbjct: 387 RNQSSEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 446 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + FF + G E + G G+ Y Sbjct: 447 PSRFERRFFTDM----GSTERPGAQATRLFGNYGYSY 479 >gi|227326302|ref|ZP_03830326.1| hypothetical protein PcarcW_02904 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 479 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 121/456 (26%), Positives = 216/456 (47%), Gaps = 28/456 (6%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 + T +++ LF++ V + A + ++ + +N+ +L + Sbjct: 12 FRGTCKRLLAAGLFNAVLPVTLTTMMLPA--TTLAAGVSVAPVTDEVRLTVNQGRLLHLN 69 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 VLV+DP A + SP ++++ K+VG + + +G + + ++ E D+ L Sbjct: 70 ALPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKAL 129 Query: 124 EMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-------- 174 ++R ++I++E + V++ G V T QD++R ++ + ++S S Sbjct: 130 GERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASSGGGGQGGGGG 189 Query: 175 ----QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 ++ SS KV+N L I Q+ ++V + EV R + ++GF + + S+ + + Sbjct: 190 GERLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTA 249 Query: 231 AADFGGKFVSEGGDFSVKGV------LDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + + R +L A+ + LAEP LTA+SG++ Sbjct: 250 GSGSRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGET 309 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A+F +GG+ + + + S+ YGV+L TPT+LS RI L I EVSE + Sbjct: 310 AAFAAGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGS 367 Query: 345 -----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS +P+ G LF Sbjct: 368 VQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFE 427 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 + ++EETE+ I AT ++V+PV DL P Sbjct: 428 SESTSQEETELVIIATAYVVEPVNAGDLQTPGQGVK 463 >gi|117618977|ref|YP_855991.1| protein transporter, outer bacterial membrane secretin (secretin) family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560384|gb|ABK37332.1| protein transporter, outer bacterial membrane secretin (secretin) family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 465 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 113/457 (24%), Positives = 193/457 (42%), Gaps = 38/457 (8%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + +L V D V++ V S + + ++G+ VG+ ++++ D Sbjct: 18 AAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTALD 77 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+ + + + + D+A L+ R+ S + +V+ G V + + + + E Sbjct: 78 GRTLGHYRVQVVADLAPLKQLARQHFPQSRLSFSESGGAIVVAGEVTSPLQAHEILTMVE 137 Query: 166 TFLSQSGRNQYANSSSKK------------------------VMNLLNIAGEDQVTLKVT 201 F A ++ V+N L +AG DQ+ + V Sbjct: 138 GFAKGIQPQGSALGTTAPVPPQTGSQDEGAAVAGGGSGQYAHVINQLRLAGSDQINISVR 197 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 I E++R +Q+G + S G G +F S G D ++ Sbjct: 198 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 253 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + + LAEP LTA SG++A+F SGG+ + + G + +G+ L TPT Sbjct: 254 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 312 Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 +L RI L + EVS E + + +P R+ TT+EL G + LAGL++ Sbjct: 313 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 372 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436 Q E +P L +IP L F ++ F +E+E+ I AT LV+P LS P DHY Sbjct: 373 RNQSSEALPFLGEIPGLAPFFGSNGFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 432 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + FF + G E + G G+ Y Sbjct: 433 PSRFERLFFTDM----GSTERPGAQATRLFGNYGYSY 465 >gi|227114876|ref|ZP_03828532.1| hypothetical protein PcarbP_18025 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 479 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 120/456 (26%), Positives = 217/456 (47%), Gaps = 28/456 (6%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 + T +++ LF++ V + A + ++ + +++ +LQ+ Sbjct: 12 FRGTCKRLLAAGLFNAVLPVTLTTMMLPA--TTLAAGVSVAPVTDEVHLTVHQGRLLQLN 69 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 VLV+DP A + SP ++++ K+VG + + +G + + ++ E D+ L Sbjct: 70 ELPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKAL 129 Query: 124 EMTLRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQS----------- 171 ++R ++I++E + V++ G V T QD++R ++ +T++ S Sbjct: 130 GERMKREFPGADIQLEPSIPSGVIVRGSVDTPQDAKRVIDSIQTYIKSSVGGGQGGGGGG 189 Query: 172 -GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 R ++ +S V+N L I Q+ ++V + EV R + ++GF + + S+ + + Sbjct: 190 GERLPGSSETSGNVVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTA 249 Query: 231 AADFGGKFVSEGGDFSVKGV------LDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + + R +L A+ + LAEP LTA+SG++ Sbjct: 250 GSGSRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGET 309 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A+F +GG+ + + + S+ YGV+L TPT+LS RI L I EVSE + Sbjct: 310 AAFAAGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGS 367 Query: 345 -----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS +P+ G LF Sbjct: 368 VQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFE 427 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 + ++EETE+ I AT ++V+PV DL P Sbjct: 428 SEATSQEETELVIIATAYVVEPVNAGDLQTPGQGVK 463 >gi|89899603|ref|YP_522074.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89344340|gb|ABD68543.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 571 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 127/543 (23%), Positives = 213/543 (39%), Gaps = 97/543 (17%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISD---VEIGKGKKISIGLNKVIILQVPVDVQDV 69 + + + AKLP A A + + + I + K +L+ V + Sbjct: 25 GATVQAGKATAAKLPAPATAPARQALSTTGLCSRVNIAPAVLIPVGKSTVLRPSSPVTRI 84 Query: 70 LVSDPTKA-------------------------------DVVVHSPRTMYLFGKNVGQAN 98 L+ +P A DV++ +P +YL GK +G N Sbjct: 85 LLGNPENARAARPADTPEGKKEEGVKTPSVNTRPGVADVDVLLLAPTEVYLLGKTIGTTN 144 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDS 157 V+++ DG D+++ D L+ + + + + I+V D++VL GMV + Sbjct: 145 VVMLDRDGTC-TAFDVVVAMDTMALQAVIGQLLPIEKEIKVTSAFDSIVLSGMVSDTEAL 203 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 R +L+ ++ +N +V+N+L + QV L+V +AE+ + +L Q G Sbjct: 204 TRVTDLANAYVRGQDGGGQSNQ---RVVNMLEVGAPQQVMLEVKVAEISKSLLDQFGINF 260 Query: 218 S------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---------- 255 S G + G S SV V+ Sbjct: 261 SRAYVPGDGSMMRFLSGIFGGAVGAMGQISGTGASGVPFSSVDAVIGGTVPIAGASGGNV 320 Query: 256 -------------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 L+ + ++ LAEPT+ AISGQ+ SF +G Sbjct: 321 TVTYDATTGRPTYTTSYGTVPGRGVSNATLNMQKNDGLVKVLAEPTIMAISGQTGSFLAG 380 Query: 291 GQHLYKTVS---SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PV 340 G+ S T++ ++GV + FTPTVL GRI LR++ EVSE Sbjct: 381 GKIFIPVSKDNGSGGSTTTLEEKEFGVSVRFTPTVLGSGRINLRVRPEVSELNVAGVQIS 440 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G +PS+ RKA+TTV+L G + + GL+K++ P L ++P++GALFR+ Sbjct: 441 SGGLNAVLPSFTSRKAETTVQLMDGQSFAIGGLIKNNTTTNINAFPFLGELPVVGALFRS 500 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 + F + +E+ TP LVKP+ P D Y ++ ++ AS Sbjct: 501 TEFQTDRSELVFVITPRLVKPL-PVGYRLPTDGYVPPSRSELILGGKLEGQRTDDAASGD 559 Query: 461 EGQ 463 Sbjct: 560 NPA 562 >gi|328952514|ref|YP_004369848.1| type II and III secretion system protein [Desulfobacca acetoxidans DSM 11109] gi|328452838|gb|AEB08667.1| type II and III secretion system protein [Desulfobacca acetoxidans DSM 11109] Length = 536 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 114/504 (22%), Positives = 195/504 (38%), Gaps = 61/504 (12%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 +SI L + + + + + I + + + Sbjct: 53 YLSRWLSIVLLFFLLTSGRAVLAENESDFASKAGRIVIAPHM--------SFVKRTQRPI 104 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGK-NVGQANVILIGHDG-KQMLNLDILIERDI-AHL 123 V++++P+ AD + +P +++ GK G ++ L D + + + + + + Sbjct: 105 TRVVLANPSLADAELLTPTQLFIVGKVKQGVTSLTLWHGDNYAETYEIVVSFDDKVWNDV 164 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + +RR + + ++VE + + V+L G V + D + ++++ F + Sbjct: 165 QAAIRRLVPRARVKVERLPEGVMLDGAVESQGDLDKVDKIAKFFFGECT----------- 213 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------------- 217 N++ + G QV L+V +AEV R +KQ+G Sbjct: 214 --NMITVMGSQQVQLEVKVAEVSRSGIKQLGLGFLLDKDYKVAVFPSGTAAGAMAGDRTT 271 Query: 218 --SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 SS S A F ++ L+ R LA P Sbjct: 272 VSQWPTGSSDTKTSSLASVAALASPYSSAFQALVHGLNDDILGIVSLLQGQGLTRLLASP 331 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 TL +SGQ A F GG+ Y+TV STG +GV+L FTP VL I + + E Sbjct: 332 TLVTMSGQEAHFLVGGEIPYQTV-GSTGTPGTDFKKFGVMLKFTPYVLGDETITISVDPE 390 Query: 336 VSEPV-----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 VS P + +P R +T++L G +AGLL+DD + + IP L Sbjct: 391 VSAPDYTLGTTTSSGTTVPGLITRTGHSTLQLKDGQVFAMAGLLRDDFRSTVKKIPFLGN 450 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHY-SVEDDAKAFFFNRV 448 +PILG LF + F R ETE+ I P +V+ + +++ P + D F NR Sbjct: 451 LPILGTLFTSKEFQRSETELMIIVKPKIVRALNPQEVPALPGSNMERDVSDLDFFILNRG 510 Query: 449 NKIYGPKEASEVE-GQNYKGAIGF 471 G A ++ G IGF Sbjct: 511 WPKTGASSAPPPAKAPSFVGEIGF 534 >gi|220922532|ref|YP_002497834.1| type II and III secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947139|gb|ACL57531.1| type II and III secretion system protein [Methylobacterium nodulans ORS 2060] Length = 479 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 121/481 (25%), Positives = 192/481 (39%), Gaps = 57/481 (11%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + E ++ + +NK ++V D+L+ A+V+ S +T+Y+ GK VG N Sbjct: 6 PAAGETITVTRVRVPVNKSQTMRVVAPFSDILIGASKIAEVIPLSDQTLYILGKEVGTTN 65 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 V L+ + K + +D+ + D ++ + +R D VL G Sbjct: 66 VSLVDANKKVIGVVDVEVGLDAGNIGAKVLGGSGARGVRFTTEGDKAVLTGTAEDAV--- 122 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + +N + VMN+ + QV LKV E+ R + +G + Sbjct: 123 ---------AADRAVALASNLAPGGVMNMTTVRSTQQVMLKVRFIEIDRTAGRDLGVRWE 173 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-------------------------- 252 T S A + G + + + Sbjct: 174 GTNRSVAGRSGTVAATPEALTTAPGGNGIGLLSNAIPAVAGAALSTVAAPQFGQFAARLI 233 Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GAT 305 + + ALE R LAEP L A SGQ A F +GG++ T SSS Sbjct: 234 NSNSAKVDLFISALETQGLARRLAEPNLVASSGQPAEFLAGGEYPIPTASSSGALGVPTI 293 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVE 361 +VT ++GV L FTPTVLS G I L+++ EVSE ++ +P R+A T +E Sbjct: 294 TVTFKEFGVRLTFTPTVLSNGLINLQLEPEVSEIDPAISVNTGLVTVPGLSKRRARTNIE 353 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G + +AGLL+ ++ E +P L IP+LGALF + F + +TE+ + TP LVKP Sbjct: 354 MRDGQSFAIAGLLQAVNEKNLEQLPWLGSIPVLGALFSSKEFRQRDTELVVIVTPHLVKP 413 Query: 422 VAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY-------KGAIGFIY 473 L+ P D +DA F + Q G+ G + Sbjct: 414 SKPGQPLATPLDTRMPTNDADYFLGGQTELPKSKNPGKPSRLQELISAEGAAIGSYGHVV 473 Query: 474 K 474 K Sbjct: 474 K 474 >gi|87199101|ref|YP_496358.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87134782|gb|ABD25524.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 539 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 121/472 (25%), Positives = 208/472 (44%), Gaps = 56/472 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 + + ++I + + ++ VP + DV V+D ADV V S +Y+FGK G Sbjct: 40 APLHAQGMTSPARTVTISIGRGELVTVPGRMADVFVADERVADVQVKSTNQLYVFGKAGG 99 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 + + G + + ++ + ++ ++ L + ++ I V +++TV+L G V + Sbjct: 100 ETTIYASNAKGDVVWSANVRVGNNLDSIDQMLHLAMPEARINVATMNNTVLLTGTVAAPE 159 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 D+ A L + F+ + V++ L +A QV+L V AEV R +++ +G Sbjct: 160 DAAEAERLVKAFVGEKT----------NVISRLKMATPLQVSLHVKFAEVSRSLVRTLGV 209 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---------FETVLHA---- 262 + + G V+ + S + A Sbjct: 210 NLTTIDGTGGIKFGIGQGSTTGSVATNRNLPFGVGTSSTSGYILDPTGATSNYVSATGTS 269 Query: 263 ---------------------------LERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 E + TL+EP LTAISG++A F +GG++ Sbjct: 270 VAASSSGTTIAGMGKLLGLDLLAALDAGETIGLVTTLSEPNLTAISGETAEFLAGGEYPI 329 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSY 351 VS G TS+ YGV L +TPTVL+ GRI +R++ E SE ++ ++P+ Sbjct: 330 P-VSQGLGTTSIEYKKYGVSLAYTPTVLANGRISIRVRPEASELSSTGALKLDSVEIPAL 388 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 VR+A+TTVEL SG + ++AGLL++ Q +P IPILG+LFR++ + + ETE+ Sbjct: 389 TVRRAETTVELGSGQSFMIAGLLQNGAQNALTKMPGAGDIPILGSLFRSTSYKKGETELV 448 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 I TP+LV PV D+ P D + ++ + + Q Sbjct: 449 IVVTPYLVNPVNANDIKLPTDGFQSPNEIQR-LLGHMESDGVTGGDRPKPTQ 499 >gi|197337022|ref|YP_002157812.1| general secretion pathway protein D [Vibrio fischeri MJ11] gi|197314274|gb|ACH63723.1| general secretion pathway protein D [Vibrio fischeri MJ11] Length = 440 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 110/401 (27%), Positives = 181/401 (45%), Gaps = 38/401 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ ++ DV V VSDP AD V + + ++GK +GQ++V++ +G + Sbjct: 27 INMSEGDSQVILANKDVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRNGHTL 86 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N +++ + + ++ + D ++ V + + VVL G V T Q+ + L Sbjct: 87 ANKKVIVNKSLDSIKQYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVGQLLD 146 Query: 170 QSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + + ++N + +A QV +K++IAEV + L+ IG Sbjct: 147 KDDEKFTFEQDMEDQDYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFLQDIG 206 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 Q+ + G +V+ A+ T + LAE Sbjct: 207 IQYG-------------------TDAAGVFIQPLTHFSSSDIMSVITAIGSDTVGQILAE 247 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ +SG+SASF GG+ T +T+V +YGV L V +I L + Sbjct: 248 PNLSVVSGESASFLVGGELPVVTTV--NNSTNVMYKEYGVRLELMAKVKKDDKITLSLVP 305 Query: 335 EVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 EVS I ++ D+P+ + R+A TTVEL G + VL GLL + ++ + IP + IP Sbjct: 306 EVSSLDIQYENDSYDLPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFIGDIP 365 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 ILGALFR S R +TE+ I AT LVKP+ + P Sbjct: 366 ILGALFRGSSTKRNKTELLIVATVNLVKPIHSSQIQLPMMR 406 >gi|59713403|ref|YP_206178.1| general secretion pathway protein D [Vibrio fischeri ES114] gi|59481651|gb|AAW87290.1| general secretion pathway protein D [Vibrio fischeri ES114] Length = 440 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 110/401 (27%), Positives = 181/401 (45%), Gaps = 38/401 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ ++ DV V VSDP AD V + + ++GK +GQ++V++ +G + Sbjct: 27 INMSEGDSQVILANKDVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRNGHTL 86 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N +++ + + ++ + D ++ V + + VVL G V T Q+ + L Sbjct: 87 ANKKLIVNKSLDSIKQYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVGQLLD 146 Query: 170 QSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + + ++N + +A QV +K++IAEV + L+ IG Sbjct: 147 KDDEKFTFEQDMEDQDYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFLQDIG 206 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 Q+ + G +V+ A+ T + LAE Sbjct: 207 IQYG-------------------TDAAGVFIQPLTHFSSSDIMSVITAIGSDTVGQILAE 247 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ +SG+SASF GG+ T +T+V +YGV L V +I L + Sbjct: 248 PNLSVVSGESASFLVGGELPVVTTV--NNSTNVMYKEYGVRLELMAKVKKDDKITLSLVP 305 Query: 335 EVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 EVS I ++ D+P+ + R+A TTVEL G + VL GLL + ++ + IP + IP Sbjct: 306 EVSSLDIQYENDSYDLPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFIGDIP 365 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 ILGALFR S R +TE+ I AT LVKP+ + P Sbjct: 366 ILGALFRGSSTKRNKTELLIVATVNLVKPIHSSQIQLPMMR 406 >gi|260775653|ref|ZP_05884549.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] gi|260608069|gb|EEX34238.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] Length = 442 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 109/414 (26%), Positives = 178/414 (42%), Gaps = 34/414 (8%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 + + + + + + ++ V VS+P AD V + ++ K+ Sbjct: 12 SPLLSVATTVAASEYLPMAEGDARPFATQQEIGTVFVSNPAVADYQVIDKHKVVIYSKST 71 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G++++I+ G +L+ I + + ++ LR ++ + V + VVL G V + Sbjct: 72 GKSSLIVFDQSGNTILSRRIQVNKSADSIQRYLRNHYPNAQVNAYYVGEQVVLSGTVSSE 131 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLK 199 Q + L + Q ++ V+N + + QV +K Sbjct: 132 QVKDEIYIVVGEMLEKPANRQKFELETEDESYEMKFMERREYDGVVNNIEVVVTKQVNVK 191 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 V+IAEV + L+QIG + G G A + Sbjct: 192 VSIAEVSQKALEQIGVSYFSKGQVPGSGVFVNA---------------INAFSADDILMM 236 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 ++A++ + R LAEP L+ SG+SASF GG+ T G +SV+ ++GV L Sbjct: 237 INAIDNESVGRVLAEPNLSVTSGESASFLVGGELPVVTTI--DGGSSVSYKEFGVRLELM 294 Query: 320 PTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 V +I L + EVS + D+P+ + R+A TTVEL G + VL GLL + Sbjct: 295 AKVKRDNKITLSLVPEVSSLDSQYENDTYDLPALKTRRARTTVELGDGQSFVLGGLLSSE 354 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + IPL+ IPILG LFRN+ R +TE+ I AT LVKPV +S P Sbjct: 355 DMESLSKIPLIGDIPILGTLFRNAETERNKTELIIVATVNLVKPVETSTISLPT 408 >gi|283787693|ref|YP_003367558.1| tight adherence secretin RcpA [Citrobacter rodentium ICC168] gi|282951147|emb|CBG90838.1| putative tight adherence secretin RcpA [Citrobacter rodentium ICC168] Length = 482 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 124/496 (25%), Positives = 215/496 (43%), Gaps = 55/496 (11%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 R TM+S L ++ LP A + + + Sbjct: 8 SRHVLTMLSHLLLTAVLLSFSLPAAAGA-----------------LYMKHGQSRNFHFTG 50 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 D+ + +SDP AD V + + + ++ KN G ++I+ G + +L I ++ ++ + Sbjct: 51 DLDTIFISDPRVADYKVVNNKNIIVYAKNTGTTDLIVYGRNNTVLLKHSISVDPFLSDIN 110 Query: 125 MTLRRFIADSNIRVE------MVSDTVV--LHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 + R ++I V +D VV ++G V + +L + ++ SG + Sbjct: 111 QRVARLFPGNSIEVTRFMGGATAADKVVYIINGSVTDEESMDAIYQLVGSIVNSSGGEEK 170 Query: 177 ANSSSKK-------------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 N S+ K V+N + + +QV + +T+ EV + +G Sbjct: 171 DNKSANKRVVDSKINTDLIEKKKYANVINKMQLVASNQVNVHLTVVEVSKTFTDALGIDW 230 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 S SS + + + G F KG D + TV++A++ + R +A+P L Sbjct: 231 SSLTLSSIVNGGASINNPGTF----NLLGFKGGFDAKNISTVINAIQNDSVARIMAQPNL 286 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 T +SG++A F GG+ + +S T+VT +YG+ L V +I L + E+S Sbjct: 287 TVLSGETADFLVGGEIPILSKNSDNEGTTVTYKEYGIKLSIAAKVEKKSKIKLSLSNEIS 346 Query: 338 EPVI--GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 NA +P+ R++ +T+EL G + + GLL + + +P + IPILG Sbjct: 347 SISGAYSFNAYSIPTLTTRRSSSTIELADGDSFAIGGLLTEKDYETLGKVPFIGDIPILG 406 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 AL RNS RE+TE+ I AT LVKPVA D+ P Y+ + K FF V+K G Sbjct: 407 ALARNSNTQREKTELVIFATVNLVKPVASNRDIVLP--EYNKTSNNKLFFNVGVDK--GT 462 Query: 455 KEASEVEGQNYKGAIG 470 +E + + + G Sbjct: 463 RENRLSKDTDKFLSYG 478 >gi|258620803|ref|ZP_05715838.1| Flp pilus assembly protein [Vibrio mimicus VM573] gi|258587001|gb|EEW11715.1| Flp pilus assembly protein [Vibrio mimicus VM573] Length = 444 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 106/442 (23%), Positives = 183/442 (41%), Gaps = 42/442 (9%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + +++ + + + V V+D T AD + + ++G G +VI+ G Sbjct: 23 AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGG 82 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 ++ N ++++ + + L+ TL D +I V V D VVL G V + + + L Sbjct: 83 NEIYNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGE 142 Query: 167 FLSQ------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L + A V+N L + +Q+ +K+TIAEV Sbjct: 143 MLKKNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSS 202 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G + G G ++ ++ A Sbjct: 203 FLSELGVSYGDIGGGD----------------VGKFYNKLLDFTAQDIVAIIAASGNDDI 246 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + LAEP L+ ISG++ASF GG+ T ++ +YG+ L V I Sbjct: 247 GQVLAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENI 304 Query: 329 GLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS ++ + PS + RKA TTV+L G + VLAGLL + ++ Sbjct: 305 RLSLLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRK 364 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP+L IPILGALF +++ +R++TE+ I AT LV PV + P + D + Sbjct: 365 IPILGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLL 422 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 ++ + P+ + + Sbjct: 423 RIDLSGVDEPELQRTINAGGFN 444 >gi|86159249|ref|YP_466034.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775760|gb|ABC82597.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 487 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 125/484 (25%), Positives = 207/484 (42%), Gaps = 54/484 (11%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 M + + VA + + I D E+G + +S+ + +L V + + Sbjct: 1 MSRHAVVVALMLVAGRAAAAQDVVPTMRI-DREVGAARSMSLEAGQNRLLVVSDQIGRIA 59 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V++P AD+ V +P + L K +G ++ L D + + + + R++ L L+ Sbjct: 60 VANPDVADLKVVTPYQVLLTAKGIGSTDLTLWDRDNHPL-VIALQVTRNLEGLRKQLKEL 118 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 A I V D VV+ G V ++ +R E++ + KV NL+ + Sbjct: 119 FAGEKIEVSSAGDLVVISGQVSDVRIPERVAEVAR-------------LHATKVANLVQV 165 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFAADFGGKFVS 240 +G+ QV L+V AEV R L+++G + F + Sbjct: 166 SGQQQVQLEVRFAEVGRTGLREMGVNFFHKSDDGKRVGGMTGNRTYPGDFLNTQSNPAIP 225 Query: 241 EGGDFS---------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G +F F +L+ LE++ +TLAEPTL A Sbjct: 226 GTGPRGLWGPGMPPDVPNPAFNNAFSFFLSQGGQFPFSVMLNLLEQSNLAKTLAEPTLVA 285 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 +SGQ A+F +GG+ S+ G T+V +G+ L FTPTV+ I LR++ EVS+ Sbjct: 286 MSGQEAAFLAGGELPIPLA-STFGQTAVEWKKFGIQLRFTPTVIGD-AIHLRLKAEVSDL 343 Query: 340 VIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 +P R+++TT+ L G + +AGL+ D ++ +P+L IPILG Sbjct: 344 DPTTAVTVGGTTIPGLVSRQSETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILG 403 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFNRVNKIYG 453 ALFR+ + R+ETE+ + T L KPVA +L P D + DA F Sbjct: 404 ALFRSQAYQRDETELLVVVTARLAKPVAPHELPPLPTDFENNDPSDAALFLLGSDGSAVK 463 Query: 454 PKEA 457 + Sbjct: 464 QPKP 467 >gi|262164949|ref|ZP_06032687.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus VM223] gi|262027329|gb|EEY45996.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus VM223] Length = 444 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 106/442 (23%), Positives = 182/442 (41%), Gaps = 42/442 (9%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + +++ + + + V V+D T AD + + ++G G +VI+ G Sbjct: 23 AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGG 82 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 ++ N ++++ + + L+ TL D +I V V D VVL G V + + + L Sbjct: 83 NEIYNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGE 142 Query: 167 FLSQ------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L + A V+N L + +Q+ +K+TIAEV Sbjct: 143 MLKKNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSS 202 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G + G G ++ ++ A Sbjct: 203 FLSELGVSYGDIGGGD----------------VGKFYNKLLDFTAQDIVAIIAASGNDDI 246 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + LAEP L+ ISG++ASF GG+ T ++ +YG+ L V I Sbjct: 247 GQVLAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENI 304 Query: 329 GLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS ++ + PS + RKA TTV+L G + VLAGLL + ++ Sbjct: 305 RLSLLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRK 364 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP+L IPILGALF +++ +R++TE+ I AT LV PV + P + D + Sbjct: 365 IPILGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLL 422 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 + + P+ + + Sbjct: 423 RIDLTGVDEPELQRTINAGGFN 444 >gi|325108834|ref|YP_004269902.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] gi|324969102|gb|ADY59880.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] Length = 736 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 99/488 (20%), Positives = 187/488 (38%), Gaps = 49/488 (10%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 + + + +K+ + LN+ +++ V + ++DPT D+ Sbjct: 43 APTRSAQSSRIQQRLDARIVSMPQVERKLELVLNRSQLVKTRSRVTRMAIADPTVIDIAP 102 Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA----------HLEMTLRRFI 131 + G +G + L + L ++ + D LE + Sbjct: 103 FEEDEFAIIGTAIGSTTLTLWFENDDNPLIYEVTVIDDPNVEEQLRIDYGKLERKIAILF 162 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS----------- 180 +S + + + + +V+ G + ++ R +++ Y + Sbjct: 163 PNSKVYLIPLHEKLVVKGQAKDAAEAARILQIVRGEFLDDYGGLYGPNGGAGRGGGGGGG 222 Query: 181 -------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 S ++N+L + GE QV L VTIAE+ R L+++G ++ ++ Sbjct: 223 YDDDGIRDEDDLYSSFIVNMLQVPGEYQVMLHVTIAELNRSQLRRMGVDFAVLFANGQHF 282 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 GG ++ G+ + +++AL + L+ P+LT +SG A F Sbjct: 283 IGSTIS--------GGVPTLTGIFNNGDISVLINALASNGTAKILSRPSLTTLSGHPAQF 334 Query: 288 TSGGQH--LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 +GG+ TS +G + PTV+ LRI E S+ + Sbjct: 335 LAGGEFAVPTTVGVGGVQGTSTQFRGFGTSMVVVPTVVDGDLFRLRIAPEFSQINQNNSV 394 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL-FRNSRFN 404 G +P R+ TTVEL G TIVL GLL IPLL +IP++G L F R Sbjct: 395 GGIPGLDSRRVQTTVELREGQTIVLGGLLSRQTASEVTRIPLLGEIPLIGPLMFNTKRAT 454 Query: 405 REETEIFIAATPFLVKPVAMRDL-SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 +E E+ + TP +V+ + ++ P + + +D + + R G + + Sbjct: 455 EDELELLVLVTPEIVRAMDPDEVPPMPGYYVTHPNDRELY---RYAMTEGAPDLEVYQLA 511 Query: 464 NYKGAIGF 471 Y +G+ Sbjct: 512 PYGNKVGY 519 >gi|283779855|ref|YP_003370610.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283438308|gb|ADB16750.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 585 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 108/476 (22%), Positives = 199/476 (41%), Gaps = 24/476 (5%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 RY + + L + P+ ++ + + G +K+ + +N +++ Sbjct: 13 RYSLLAGLPALLVALTFAAPAFSQPMSLPGVGPMPAAVKFKVQGPAEKLEMTVNTSRVVE 72 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 P DV +LV++P + SP ++ L G + + D + + LD+++ D+ Sbjct: 73 FPFDVPKMLVNNPDLVRITPISPNSIQLSAVKGGVTQLNVWNADDQ-VTTLDLIVIPDVQ 131 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 LEM L+ D+ IR+ ++ ++ + G V + ++E + Sbjct: 132 ELEMILKHEFPDAAIRLRPLASSLYISGFVPKAEMVASITRVAEDYFP------------ 179 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKF 238 K++N + + G +V L V + EV R L+ +GF + ++S + G Sbjct: 180 -KIINNMTVGGVQKVLLHVKVMEVSRTKLRTMGFDWAQLNGDDFVTQSVSGLLQTPGTLT 238 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + G + D F L AL + + LAEPTL +SG+ A F GG+ Sbjct: 239 GNTGATVRFGILTDNNQFYGFLEALRQNDLAKLLAEPTLVTMSGRPAYFNVGGEVPIPM- 297 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKA 356 S G T+V +G + F P VL G I L ++ EV+E +P +R R A Sbjct: 298 QQSLGVTTVQYKQFGTRIDFVPIVLGNGSIRLEVRPEVTEIDPSLRDAVTGVPGFRQRGA 357 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT VE+ +G T+ +AGL+ + ++ G+P L+ +P G FR E E+ I TP Sbjct: 358 DTAVEIKAGQTMAIAGLVYNRVEASNRGVPFLADLPWAGGAFRRVSEKVNEVELVIMVTP 417 Query: 417 FLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN--KIYGPKEASEVEGQNYKGA 468 + + ++ P + D + + + K +G ++G Sbjct: 418 EFTEALDPSEVPACGPGQLTTSPTDKELYGRGYIEVPKANCNNGNCAPQGSMFQGT 473 >gi|170022934|ref|YP_001719439.1| type II and III secretion system protein [Yersinia pseudotuberculosis YPIII] gi|169749468|gb|ACA66986.1| type II and III secretion system protein [Yersinia pseudotuberculosis YPIII] Length = 423 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 104/440 (23%), Positives = 191/440 (43%), Gaps = 35/440 (7%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 K+I + + I+++ ++ V VS AD + ++ ++ K G A Sbjct: 10 FENSANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 69 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + + + +L+ I +R DS I + + ++ +L G T + Sbjct: 70 LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 129 Query: 161 VELSETFLSQSGRNQ-----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 + + + ++ + V+N + + +QV +K+TI E+ +D + IG Sbjct: 130 ANIVGEATASKKEKEREEHYQSSPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGL 189 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + S++G + + S T++HA+ + LAEP Sbjct: 190 DWNSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEP 230 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L+ +SG+ ASF GG+ + + + SV ++G+ L+ V RI + + E Sbjct: 231 NLSVLSGEYASFLVGGEIPIVSTNQNG--ISVEYKEFGIKLNIGAKVNEKKRIRVMLGEE 288 Query: 336 VSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 VS N PS R+RKA+TTVEL G + +L GL+ ++ + IP + +P Sbjct: 289 VSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVP 348 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +LGALFRN++ R ++E+ + AT LVKPV+ R + PD + + FF N Sbjct: 349 LLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTIERFF----NLTN 402 Query: 453 GPKEASEVEGQNYKGAIGFI 472 + +++ GFI Sbjct: 403 IKDAKRRKQAKDFLQKGGFI 422 >gi|261251281|ref|ZP_05943855.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] gi|260938154|gb|EEX94142.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] Length = 441 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 107/442 (24%), Positives = 185/442 (41%), Gaps = 43/442 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +S+ + + + V V++ AD + + ++G G +VI+ Sbjct: 22 ASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKIIDDNKVVVYGVGQGSTSVIVYDRG 81 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G ++ N ++++ + + L+ T+ D N+ V V D VVL G+V + + Q+ L Sbjct: 82 GNEIYNAELVVNQSLRLLKQTIIARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVG 141 Query: 166 TFLSQ-----------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L + + + + +V+N L + +Q+ +K+T+AEV Sbjct: 142 EMLKKERRRHTYELRDADGEEYDELDYTSRFTYDQVINHLKVLTTEQINVKLTVAEVSSS 201 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G +S +G G + +V+ A Sbjct: 202 FLSELGVSYSDSGE------------------PGKFVNKLLDFTAQDIVSVISASGDDKI 243 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + LAEP L+ ISG+ ASF +GG+ S++ +YGV L V I Sbjct: 244 GQVLAEPNLSVISGEQASFLAGGEIPIAVRDEDG--ISISYKEYGVKLAMVAKVTDSENI 301 Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS +P+ R R+A TTV L G + VLAGLL + ++ Sbjct: 302 RLTLIPEVSSIDESNKTSTGLISVPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTK 361 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP L IPILGALF ++ NR +TE+ I AT LV PV + P + D + Sbjct: 362 IPFLGDIPILGALFSHTTTNRSKTELIIVATVNLVDPVESEQVKLP--SFKRTSDIERLL 419 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 ++++ P+ +E + Sbjct: 420 RIDLSELNEPELEGTIEQGGFN 441 >gi|332162954|ref|YP_004299531.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667184|gb|ADZ43828.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 410 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 106/403 (26%), Positives = 188/403 (46%), Gaps = 33/403 (8%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +++ ++ V VS AD + ++ ++ K G A IL + + IL++ Sbjct: 1 MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 I +R +S+I + + D+ +L G V T + + + + + Sbjct: 61 TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120 Query: 179 SSSK-------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 +V+N + + G +QV +K+TIAEV +D + IG S G+ SG Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + F + KF ++G ++HA+ + R LAEP L+ +SG+SA Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDDSIARVLAEPNLSVLSGESA 227 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IG 342 SF GG+ V+++ +T +T +G+ L+ V + RI +++ EVS Sbjct: 228 SFLVGGELPL--VNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 PS+R RKA TT+EL G + +L GL+ ++ + IP + IPILGA FRN+ Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAE 345 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 + +TE+ + AT LV+PV+ +++ P ++ + FF Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFFN 386 >gi|51597670|ref|YP_071861.1| outer membrane secretin family protein [Yersinia pseudotuberculosis IP 32953] gi|186896808|ref|YP_001873920.1| type II and III secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|51590952|emb|CAH22610.1| putative outer membrane secretin family protein [Yersinia pseudotuberculosis IP 32953] gi|186699834|gb|ACC90463.1| type II and III secretion system protein [Yersinia pseudotuberculosis PB1/+] Length = 439 Score = 266 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 105/440 (23%), Positives = 190/440 (43%), Gaps = 35/440 (7%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 K+I + + I+++ ++ V VS AD + ++ ++ K G A Sbjct: 26 FENSANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 85 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + + + +L+ I +R DS I + + ++ +L G T + Sbjct: 86 LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 145 Query: 161 VELSETFLSQSGRNQ-----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 + + + +N + V+N + + +QV +K+TI E+ +D + IG Sbjct: 146 ASIVGEATASKKEKEREESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGL 205 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + S++G + + S T++HA+ + LAEP Sbjct: 206 DWNSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEP 246 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L+ +SG+ ASF GG+ + + + SV ++G+ L+ V RI + + E Sbjct: 247 NLSVLSGEYASFLVGGEIPIVSTNQNG--ISVEYKEFGIKLNIGAKVNEKKRIRVMLGEE 304 Query: 336 VSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 VS N PS R+RKA+TTVEL G + +L GL+ ++ + IP + +P Sbjct: 305 VSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVP 364 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +LGALFRN++ R ++E+ + AT LVKPV+ R + PD + + FF N Sbjct: 365 LLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFF----NLTN 418 Query: 453 GPKEASEVEGQNYKGAIGFI 472 + + + GFI Sbjct: 419 IKDAKRRKQAKEFLQKGGFI 438 >gi|86144318|ref|ZP_01062650.1| Flp pilus assembly protein [Vibrio sp. MED222] gi|85837217|gb|EAQ55329.1| Flp pilus assembly protein [Vibrio sp. MED222] Length = 441 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 110/442 (24%), Positives = 186/442 (42%), Gaps = 43/442 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + + + V V++ AD + + ++G G +VI+ Sbjct: 22 ASELMNLDQGAAKTINLKRQISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRG 81 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G ++ N ++++ + + L+ TL D N+ V V D VVL G+V + + Q+ L Sbjct: 82 GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVG 141 Query: 166 TFLSQSGRNQY-----------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L + R A + +V+N L + +Q+ +K+T+AEV Sbjct: 142 EMLKKDRRRAAYELKDADGEALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSS 201 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G +S +G G + +V+ A Sbjct: 202 FLTELGVTYSDSGD------------------PGTFVNKLLDFTAQDIVSVISASGDDKI 243 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 R LAEP L+ ISG+ ASF +GG+ +++ +YGV L V I Sbjct: 244 GRVLAEPNLSVISGEQASFLAGGEIPIAIRDEDG--ITISYKEYGVKLAMVAKVTDTENI 301 Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS +PS R R+A TTV L G + VLAGLL + ++ Sbjct: 302 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 361 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP+L IPILGALF +S NR +TE+ I AT LV PV + P + D + Sbjct: 362 IPILGDIPILGALFSHSSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 419 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 ++++ P+ + + + Sbjct: 420 RIDLSELDEPELENTINQGGFN 441 >gi|197123317|ref|YP_002135268.1| type II and III secretion system protein [Anaeromyxobacter sp. K] gi|196173166|gb|ACG74139.1| type II and III secretion system protein [Anaeromyxobacter sp. K] Length = 484 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 123/465 (26%), Positives = 202/465 (43%), Gaps = 54/465 (11%) Query: 20 NPSVAKLPPIKEANAAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 + A V + D E+G + +S+ + +L V + + V++P AD Sbjct: 8 VALMLVGGGAAAAQDVVPTMRIDREVGAARSMSLEAGQNRLLVVSDQIGRIAVANPDVAD 67 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 + V +P + L K +G ++ L D + + + + R++ L L+ A I V Sbjct: 68 LKVVTPYQVLLTAKGIGSTDLTLWDRDNHPL-VVALQVTRNLEGLRKQLKELFAGEKIDV 126 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 D VV+ G V ++ +R E++ + KV NL+ ++G+ QV L Sbjct: 127 SSAGDLVVISGQVSDVRIPERVAEVAR-------------LHASKVANLVQVSGQQQVQL 173 Query: 199 KVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFAADFGGKFVSEGGDFS-- 246 +V AEV R L+++G + F + G Sbjct: 174 EVRFAEVGRTGLREMGVNFFHKSDDGKRVGGMTGNRTYPGDFLNTQSNPAIPGTGPRGLW 233 Query: 247 -------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 +F F +L+ LE++ +TLAEPTL A+SGQ A+F Sbjct: 234 GPGLPPDVPNAAFNNAFSFFLSQGGQFPFSVMLNLLEQSNLAKTLAEPTLVAMSGQEAAF 293 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 +GG+ S+ G T+V +G+ L FTPTV+ I LR++ EVS+ Sbjct: 294 LAGGELPIPLA-STFGQTAVEWKKFGIQLRFTPTVIGD-AIHLRLKAEVSDLDPTTAVTV 351 Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +P R+++TT+ L G + +AGL+ D ++ +P+L IPILGALFR+ + Sbjct: 352 GGTTIPGLVSRQSETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAY 411 Query: 404 NREETEIFIAATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFN 446 R+ETE+ + T L KPVA +L P D + DA F Sbjct: 412 QRDETELLVVVTARLAKPVAPHELPPLPTDFENNDPSDAALFLLG 456 >gi|153948843|ref|YP_001399594.1| type II/III secretion system protein [Yersinia pseudotuberculosis IP 31758] gi|152960338|gb|ABS47799.1| type II/III secretion system protein [Yersinia pseudotuberculosis IP 31758] Length = 439 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 105/440 (23%), Positives = 189/440 (42%), Gaps = 35/440 (7%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 K+I + + I++ ++ V VS AD + ++ ++ K G A Sbjct: 26 FENTATAKQIYLPIGGSHIIKTQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 85 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + + + +L+ I +R DS I + + ++ +L G T + Sbjct: 86 LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 145 Query: 161 VELSETFLSQSGRNQ-----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 + + + +N + V+N + + +QV +K+TI E+ +D + IG Sbjct: 146 TSIIGEATASKKEKEREESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGL 205 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + S++G + + S T++HA+ + LAEP Sbjct: 206 DWNSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEP 246 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L+ +SG+ ASF GG+ + + + SV ++G+ L+ V RI + + E Sbjct: 247 NLSVLSGEYASFLVGGEIPIVSTNQNG--ISVEYKEFGIKLNIGAKVNEKKRIRVMLGEE 304 Query: 336 VSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 VS N PS R+RKA+TTVEL G + +L GL+ ++ + IP + +P Sbjct: 305 VSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVP 364 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +LGALFRN++ R ++E+ + AT LVKPV+ R + PD + + FF N Sbjct: 365 LLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFF----NLTN 418 Query: 453 GPKEASEVEGQNYKGAIGFI 472 + + + GFI Sbjct: 419 IKDAKRRKQAKEFLQKGGFI 438 >gi|148974885|ref|ZP_01811865.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3] gi|145965394|gb|EDK30643.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3] Length = 441 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 107/442 (24%), Positives = 185/442 (41%), Gaps = 43/442 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + + + V V++ AD + + ++G G +VI+ Sbjct: 22 ASELMNLDQGAAKTINLKRQISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRG 81 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G ++ N ++++ + + L+ TL D N+ V + D VVL G+V + + Q+ L Sbjct: 82 GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNIGDQVVLDGIVGSEEIKQKINRLVG 141 Query: 166 TFLSQ-----------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L++ A + +V+N L + +Q+ +K+T+AEV Sbjct: 142 EMLNKERRRAAYELKDADGEALDEIEYTAQYNYDQVINNLKVLTTEQINVKLTVAEVSSS 201 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G +S +G G + V+ A Sbjct: 202 FLTELGVTYSDSGE------------------PGTFVNKLLDFTAQDIVAVISASGDDKI 243 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 R LAEP L+ ISG+ ASF +GG+ +++ +YGV L V I Sbjct: 244 GRVLAEPNLSVISGEQASFLAGGEIPIAVRDEDG--ITISYKEYGVKLAMVAKVTDTENI 301 Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS +PS R R+A TTV L G + VLAGLL + ++ Sbjct: 302 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 361 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP+L IPILGALF ++ NR +TE+ I AT LV PV + P + D + Sbjct: 362 IPILGDIPILGALFSHTSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 419 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 ++++ P+ + + + Sbjct: 420 RIDLSELDEPELENTINQGGFN 441 >gi|149178342|ref|ZP_01856934.1| probable type II secretion system protein [Planctomyces maris DSM 8797] gi|148842868|gb|EDL57239.1| probable type II secretion system protein [Planctomyces maris DSM 8797] Length = 546 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 103/440 (23%), Positives = 183/440 (41%), Gaps = 38/440 (8%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI--GHDG 106 ++S+ IL++ +DV V ++DP+K +VV + + + GK+ G + L Sbjct: 67 ELSVQQRHSKILKMKMDVFRVAIADPSKIEVVAFGSQEVEVIGKDTGTTTMTLWLGDEAN 126 Query: 107 KQMLNLDI----------LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 Q+L++ + L + + + F +S I++ +D +++ G R Q+ Sbjct: 127 PQILSVQVKVEGDNSIEDLRRMEYGEFQKMINEFFPNSKIQLVPFADKLIVRGQARDEQE 186 Query: 157 SQRAVELSETF--------------------LSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + + + + + A V+++L + GE Q+ Sbjct: 187 AVQIITIIRARSGSGGGQGGGGGGGSLFADGAAADPFPGGAMLPEATVIDMLKVPGEKQI 246 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 LKV IA++ R + G ++ F + + GG V Sbjct: 247 MLKVRIAQIDRSAARTASTNIIAQSGDFGWAQLFTGV--AQQLGNGGTGLVTASFTSSDV 304 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGV 314 + + AL + + LAEP L ISG++A+F SGG+ A + T +G Sbjct: 305 DVFISALAQNGYAKILAEPNLVTISGRTANFISGGEFAVPTVVGVGGAQAATTTFKGFGT 364 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L F PTVL RI L++ S + +G + V+ TTV+L G + +AGLL Sbjct: 365 QLSFLPTVLDKDRIRLQVSPSFSTVNPALTSGGVLGVNVQAVTTTVDLREGQVLAIAGLL 424 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDD 432 ++ + +P + IP++G LF N +R+ETE+ I +P LV P+ D P Sbjct: 425 QEQQRGDLNRVPFIGDIPLVGPLFSNKGVSRDETELIILISPELVHPMEPEDAPTVLPGM 484 Query: 433 HYSVEDDAKAFFFNRVNKIY 452 + D FF N + Sbjct: 485 EVTEPGDVDFFFMNNIEGKP 504 >gi|121534343|ref|ZP_01666167.1| type II and III secretion system protein [Thermosinus carboxydivorans Nor1] gi|121307113|gb|EAX48031.1| type II and III secretion system protein [Thermosinus carboxydivorans Nor1] Length = 408 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 101/379 (26%), Positives = 173/379 (45%), Gaps = 29/379 (7%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ +N+ +L VQ V V++P ADV+V S + + GK G + + G+ Sbjct: 29 LTVAVNQSRVLGFSG-VQRVAVANPEIADVLVVSGTEVLVVGKAPGLTTMHVWTEAGR-- 85 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 ++ + D A + ++ + IRV V+ TV+L G V T Q RA +L+ + Sbjct: 86 ATYEVEVGVDDAKVAGEIKSILGYDGIRVSKVNRTVILEGAVDTQQQKARAEKLAAVY-- 143 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 KV++LL + QV ++ + E+ R +K++G + + + G Sbjct: 144 -----------GDKVVSLLEVLRPVQVKIEAKVIEINRQKIKELGIKWGNSADTPGTFI- 191 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 FG ++ + L AL ++ A + L++P + +SG AS Sbjct: 192 ----FGQSALNSKVGDVFGDLGGYADINAQLSALVKSGAAKVLSQPNVVTLSGDKASIMI 247 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----- 344 GGQ + T + DYG+ L P V G I R++ EVS Sbjct: 248 GGQIPVPVAQDNNKIT-IEWKDYGIKLDIAPEVNGDGLIQSRVKAEVSSLDYNSANSIKL 306 Query: 345 --AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++P R+RKA+T + L SG T+ + GL+ + + +P+L +P+LG LFR++ Sbjct: 307 GAGMEIPPVRLRKAETAIALSSGQTMAIGGLIATETSKDVVKVPMLGDLPVLGHLFRSTS 366 Query: 403 FNREETEIFIAATPFLVKP 421 F R ETE+ + TP LV P Sbjct: 367 FRRGETELLVLITPSLVNP 385 >gi|238897548|ref|YP_002923227.1| putative tight adherance operon protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465305|gb|ACQ67079.1| putative tight adherance operon protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 459 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 104/462 (22%), Positives = 199/462 (43%), Gaps = 55/462 (11%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + + + ++++ ++ V VS+P AD + T+ ++ K G++ Sbjct: 24 PGSANAANTGDLFMSEGESLVIKKKQNIDTVFVSNPAVADYKIVDHNTVIIYAKAEGKSE 83 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 + + ++++ I + +R +S +++E + + +L GM T + Sbjct: 84 FTFFEPNQNISYHATVMVDNIIKVVSDKIRMLYPESQVQIEKIGKSYLLTGMAPTEEVRD 143 Query: 159 RAVELSETFLSQSGRNQY--------------------------ANSSSKKVMNLLNIAG 192 V + + N N ++++N + + Sbjct: 144 NIVRMVGESIQSPKSNDKDTVSVRLDISDKGDASETTENVNSSLTNKVYERLINQIQLPV 203 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 +QV +K++I EV ++ IGF+ + G+ S +F AD Sbjct: 204 SNQVNVKLSIVEVSKEFKDNIGFEWANLGTFSFHKFNFTAD------------------- 244 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +++AL+ + R LAEP L+ +SG+SASF GG+ Y ++ S+ ++ Sbjct: 245 --RITHLVNALQDDSIARVLAEPNLSVLSGESASFLVGGEIPYVKDRDASNRASIDFKEF 302 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVL 370 G+ L T V R+ + + E+S + A MPS + R+A+TTVEL G + VL Sbjct: 303 GIKLSVTAKVNENKRVKVMLSEEISSVIGNTKAEEFTMPSLKKRRANTTVELADGESFVL 362 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 GL+ + Q+ + +P + IPILG+ FR+++ N E+ + AT LVKP+ ++++ P Sbjct: 363 GGLMNQEEQEALQKVPFIGDIPILGSFFRHTKTNNRSIELIVVATVNLVKPIPSKEITLP 422 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 D + F V K K+ +E + G GFI Sbjct: 423 D--FMKTSSIARFLNLSVIKNISQKKEAE----AFLGKGGFI 458 >gi|209809170|ref|YP_002264708.1| type II/III secretion system protein [Aliivibrio salmonicida LFI1238] gi|208010732|emb|CAQ81123.1| type II/III secretion system protein [Aliivibrio salmonicida LFI1238] Length = 445 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 113/398 (28%), Positives = 189/398 (47%), Gaps = 36/398 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ + V D+ V +SDP AD V R + ++GK++G ++V++ G G + Sbjct: 30 INMSEGGAKTISVEQDISSVFLSDPKIADYQVIDKRKIVIYGKSIGSSSVLIFGEKGNTL 89 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N I++ + +A ++ + D+ + + V + VVL+G V T Q+ + L Sbjct: 90 SNKKIMVNKSLATIQQYISVKYPDTAVDIFNVGEQVVLNGTVSTEQEKDEINGIVGELLE 149 Query: 170 QSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 +S ++ + V+N + +A QV +K++IAEV + L+QIG Sbjct: 150 KSRKDFQFEQDMEDQDYEIQFMERHEYEGVVNNIVVATTKQVNVKISIAEVSQSFLEQIG 209 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 Q+ + S G F +V+ A+ + + LAE Sbjct: 210 IQYGTSASVPGVFVQPLTSFSSS-----------------DIMSVITAIGNDSVGQILAE 252 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ ISG+SASF GG+ T +T+V ++GV L V +I L + Sbjct: 253 PNLSVISGESASFLVGGELPVVTTV--NNSTNVVYKEFGVRLDLMAKVKKDDKITLSLVP 310 Query: 335 EVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 EVS ++ ++P+ + R+A TTVEL G + VL GLL + ++ + +P + IP Sbjct: 311 EVSSLDTQYENDSYNLPALKTRRARTTVELGDGQSFVLGGLLNSEDKESLQKVPFIGDIP 370 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 ILGALFRNS R +TE+ I AT LV+P+ + P Sbjct: 371 ILGALFRNSVTQRNKTELIIVATVNLVQPIHPSQIQLP 408 >gi|312883308|ref|ZP_07743034.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368924|gb|EFP96450.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 440 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 109/439 (24%), Positives = 190/439 (43%), Gaps = 35/439 (7%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + ++I + + + + V + +PT AD + + +FG VG +VI+ Sbjct: 23 SNCSAAEILNIDQDSAKTINLKNSISTVFLVNPTIADYKIIDDNKLVIFGVGVGSTSVIV 82 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G ++ N ++++ + + L+ T+ I V + D VVL G+V + + + Sbjct: 83 YGKGGSEIYNTELIVNKSLRLLKQTILARFPGETISVSNIGDQVVLDGVVSSERVKKAVS 142 Query: 162 ELS----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 L + + SG N + +++N + + +Q+ +K+T+AEV L Sbjct: 143 RLVGEMLKKQRNVQKYSDASGGNTQLEYNYHEIINNMKVLSTEQINVKITVAEVASSFLN 202 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 +IG +S G +G + F V+ A+ + Sbjct: 203 EIGVSYSEMGGEAGKFVNKITHFSA-----------------KDIVAVISAVGNESVGHV 245 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP L+ ISG+ ASF GG+ S++ +YGV L V I L Sbjct: 246 LAEPNLSVISGEKASFLVGGEIPI--GVRDDKGVSISYKEYGVKLSMIAKVADSENIRLS 303 Query: 332 IQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVS V PS + R+A+TTV+L G + VLAGLL+ + ++ +P Sbjct: 304 LFPEVSTIDENHVTKVGQLTAPSLQTRRAETTVQLKDGQSFVLAGLLRSEERESLSKVPY 363 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L IPI+GALF +S+ +R +TE+ I AT LV PV + P + D + Sbjct: 364 LGDIPIIGALFSHSKTDRSKTELIIVATVNLVTPVDPDKVKLP--GFHRTSDIERLLNID 421 Query: 448 VNKIYGPKEASEVEGQNYK 466 ++++ PK + + Sbjct: 422 LSELTEPKLGDMIIQGGFN 440 >gi|325108090|ref|YP_004269158.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] gi|324968358|gb|ADY59136.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] Length = 714 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 111/486 (22%), Positives = 193/486 (39%), Gaps = 39/486 (8%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISD--VEIGKGKKISIGLNKVII 59 R R + L + + A + + + ++S+ + Sbjct: 22 RVFGRVLSVNTAALLLLGSLVCVQPSSASGQTHAPVTEGEIYHVLSATNQLSLTERFSRV 81 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L++ + V DP V +P + + + G ++L+ K +++ +E D Sbjct: 82 LELEKRITRVDGFDPAVLTVSALTPHRVRIQAVSAGVTTLVLVDEFDKT-YTIEVFVEGD 140 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + +L+ + RF DS+++ V D+VVL G+V + E++E F Sbjct: 141 VRYLQSYIDRFFPDSSVKAVKVKDSVVLRGVVADPSHISQITEVAEQFFP---------- 190 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---- 235 KV+N + +QV L+V I E +R ++Q+GF S S S + + Sbjct: 191 ---KVINHMQFGAANQVRLQVRIMEAQRSRIRQLGFNWSFLNGSGYVSSNPGSLSSPLGA 247 Query: 236 ------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G S V F L AL++ +R L E ++ A SG+ Sbjct: 248 NLTPGQTPGLSYGGAGLSDSSISFGVVNANSVFRGFLEALKQEGLLRILVETSVVADSGR 307 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339 AS SGG+ V + G SV ++GV L P VL G++ L I E SE Sbjct: 308 PASLLSGGEFP-ILVPQALGTLSVEWKEFGVKLEAVPIVLGQGQVILEIAPEFSERDFAN 366 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ +P+ R+A+T V + G T+++ GL+ + +P L ++P +GA FR Sbjct: 367 AAQLDNTTVPAITTRRANTQVRMKFGQTLMIGGLIATRYTAETDKVPFLGELPGIGAAFR 426 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 R++ ETE+ I TP V P+ + P V D + F+ + Sbjct: 427 RVRYDENETELIILVTPEYVAPLDPHQVPDGGPGQFSDVPTDRELFWQGMIEVPNYGGPM 486 Query: 458 SEVEGQ 463 G Sbjct: 487 PPNAGG 492 >gi|227820510|ref|YP_002824481.1| type II and III secretion system protein RhcC2 [Sinorhizobium fredii NGR234] gi|227339509|gb|ACP23728.1| type II and III secretion system protein RhcC2 [Sinorhizobium fredii NGR234] Length = 447 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 112/435 (25%), Positives = 194/435 (44%), Gaps = 21/435 (4%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 R T L + ++ + ++ + + + + IL+ Sbjct: 5 RSLRPVRTGKVFLLILLTVLAVHCALPSASAQVKVDAINGQV-----LELTVGEGTILRF 59 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 V+ V ++D ADV V SP +Y++ G N+I + D + + + + Sbjct: 60 DEPVESVFLADTAIADVRVVSPGVVYIYATKTGDTNLIALSADQMTRGTVQVRVSGNPRA 119 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 E + + + + + V G R + ++ + +++ ++ + Sbjct: 120 AEQSALALQPTTRVDISLFGGQYVGTGQTRNVGEAMDMESVLQSY----------STPDR 169 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +N IAG +QV ++V AEV R+ L + G S+ +S S G + Sbjct: 170 PALNNTTIAGSNQVNIRVRFAEVARNELTRFGIDWSLFVNSGSFSFGIVRTGGASNEDDT 229 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G ++ D + +L AL+ + LAEP +TA++GQ+ASF +GG+ V + Sbjct: 230 G-IAIGARGDHVNVNVLLDALQANGILTILAEPNITAVTGQTASFLAGGEIPVP-VPAGD 287 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADT 358 G + +GV L FTPT+L RI L+++ EVS +PS R+R+ADT Sbjct: 288 GQIGIEYKQFGVSLQFTPTLLPNNRIALQVRPEVSSVSQDSVVSISGLVVPSLRIRRADT 347 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ SG T +AGL + Q P++ +PILG LF++ RF R ETE+ I TP+L Sbjct: 348 AVEVGSGQTFAIAGLFQRQESQTLNKTPVVGDVPILGELFKSKRFQRNETELVILITPYL 407 Query: 419 VKPVAMRDLSRPDDH 433 V P + R++ P D Sbjct: 408 VTPTSERNMKTPLDS 422 >gi|218676249|ref|YP_002395068.1| Flp pilus assembly protein [Vibrio splendidus LGP32] gi|218324517|emb|CAV25991.1| Flp pilus assembly protein [Vibrio splendidus LGP32] Length = 446 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 110/442 (24%), Positives = 186/442 (42%), Gaps = 43/442 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + + + V V++ AD + + ++G G +VI+ Sbjct: 27 ASELMNLDQGAAKTINLKRQISTVFVANQEVADYKIIDENKVVVYGVGQGATSVIVYDRG 86 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G ++ N ++++ + + L+ TL D N+ V V D VVL G+V + + Q+ L Sbjct: 87 GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVG 146 Query: 166 TFLSQSGRNQY-----------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L + R A + +V+N L + +Q+ +K+T+AEV Sbjct: 147 EMLKKDRRRAAYELKDADGEALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSS 206 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G +S +G G + +V+ A Sbjct: 207 FLTELGVTYSDSGQ------------------PGTFVNKLLDFTAQDIVSVISASGDDKI 248 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 R LAEP L+ ISG+ ASF +GG+ +++ +YGV L V I Sbjct: 249 GRVLAEPNLSVISGEQASFLAGGEIPIAVRDQDG--ITISYKEYGVKLAMVAKVTDTENI 306 Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS +PS R R+A TTV L G + VLAGLL + ++ Sbjct: 307 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 366 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP+L IPILGALF +S NR +TE+ I AT LV PV + P + D + Sbjct: 367 IPILGDIPILGALFSHSSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 424 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 ++++ P+ + + + Sbjct: 425 RIDLSELDEPELENTINQGGFN 446 >gi|197118220|ref|YP_002138647.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem] gi|197087580|gb|ACH38851.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem] Length = 494 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 118/459 (25%), Positives = 193/459 (42%), Gaps = 62/459 (13%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 V + +N+ +++ + + V ++ P A++VV SP + + GK VG +I Sbjct: 23 PVAAHAAVTTEVVVNRSVLVDLHTKSERVSIASPDVAELVVISPTQLQINGKKVGSTTLI 82 Query: 101 LIGHDGKQ------MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 + GK + + ++E I L+ +++ NI+V+ +DT+VL G Sbjct: 83 VWDTAGKTSFFDVRVKRNESVLESQIEALQDQIQQMAPKDNIKVDYANDTIVLSGTAANE 142 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKK---------------------------VMNL 187 Q +A++L++ + + +G A ++ V+N Sbjct: 143 QTVAKALQLAQAYTAGNGSKAGAPATDPPLDTSRSSYQLSETQTGRQGGDADTVITVLNH 202 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 + I QV L+V +A+V + LK +G I G+S+ + G+ + D SV Sbjct: 203 VEIVEPQQVLLEVKVAQVDKTALKSLGISAFIRGASAEGFSNLVGAPVGELAIKNPDGSV 262 Query: 248 KGVLDR-------------------------FSFETVLHALERATAIRTLAEPTLTAISG 282 + VL AL + LAEP L SG Sbjct: 263 RSQATGIAGPIPGLANFTPIDSYQLGVSSFKAGIGAVLRALVTKNLAKVLAEPNLMVQSG 322 Query: 283 QSASFTSGGQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEP 339 Q F +G + Y VS ATS+ D GV L+F P VL G I L+I EVS Sbjct: 323 QVGKFLAGSKIPYSIVSGVGALSATSIQFIDVGVKLNFKPEVLENGLISLKIDPAEVSSI 382 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + P R+ T V+L G +++LAGLL+++ + IP+L IPILGALFR Sbjct: 383 TGVLAVNGYPIIDTREVRTRVKLKDGESLILAGLLQEEAIKAMSKIPILGDIPILGALFR 442 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRD-LSRPDDHYSVE 437 +++ + +E E+ TP LV A + P D Sbjct: 443 STQDDIKEKELVFFITPKLVTASAPGSRILLPTDKPLTP 481 >gi|307133496|dbj|BAJ19008.1| RcpA [Aggregatibacter actinomycetemcomitans] Length = 460 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV+ + S+ ++Q + + VS P AD + T ++ K Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151 G+ V G DG+ + + + ++ + + L+ ++N+ V+ V V+ G Sbjct: 77 GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKA 136 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200 R+ ++S + L + V++ NIA Q+ +K+ Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKL 196 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 ++ EV + + + +G S S GG ++G LD + Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +AL+ + + LAEP ++ +SG++A GG+ + G+ ++ ++G+ L Sbjct: 252 NALDNQSNGKILAEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + RI L + VS N G++P + RKA + E+ +G + ++ GL + Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +PLL IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD + Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428 Query: 438 DDAKAFFF 445 + FF Sbjct: 429 GTMERFFH 436 >gi|154250526|ref|YP_001411350.1| type II and III secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154476|gb|ABS61693.1| type II and III secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 461 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 109/438 (24%), Positives = 191/438 (43%), Gaps = 32/438 (7%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 P+ + + + + +SI + IL++ V + +++P+ DV V S R + Sbjct: 22 PMLAVLLTALLLPQGPVLAAETLSISIGGQRILKLGQTVDRIAIANPSIVDVKVISSREL 81 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 + G++ G ++ + G + +++ DI L+ L R A ++++ VVL Sbjct: 82 RILGQSEGTTDLDIWFAGGAS-KSYYVVVGADITGLQSELARDPALADVKATETGKGVVL 140 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V +++ QRA E++ ++L + ++L +A V ++V A V Sbjct: 141 KGQVYSLEAQQRAREIARSYLGKDAG------------DMLTVADRRMVAVEVRFAAVST 188 Query: 208 DILKQIGFQHSITGSSS-------GPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFS 255 LK +G +S S SF G + F++ + Sbjct: 189 STLKALGLNFQSLDNSFQFAAIGPNASSSFGYTPGAGLDPDTSLPLSQAFNLFLAWPGSN 248 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYG 313 V+ AL A + LAEPTL SG+ A F +GG+ S G ++ +G Sbjct: 249 LLGVISALSSANLAQLLAEPTLLVRSGEDADFLAGGEIPIPVPQSGVGNGTVTIEYKKFG 308 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369 V L TVL RI L++ EVSE V +P+ R R TT+EL G + V Sbjct: 309 VQLGVAATVLDNDRIVLKVSPEVSELDYTNALVVQGFRIPALRTRSTRTTIELGDGQSFV 368 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL-S 428 LAGL+ +++ IP + ++P++G F+ ++ RE E+ I ATP LV P+ ++ Sbjct: 369 LAGLMYSTSGNIEDRIPGIGELPVIGTFFKRTQNARERQELIIVATPRLVSPMEAGEVPP 428 Query: 429 RPDDHYSVEDDAKAFFFN 446 P + + + D N Sbjct: 429 LPGEGHVYDSDLGQNLLN 446 >gi|4768955|gb|AAD29695.1| rough colony protein A [Aggregatibacter actinomycetemcomitans] Length = 460 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV+ + S+ ++Q + + VS P AD + T ++ K Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151 G+ V G DG+ + + + ++ + + L+ ++N+ V+ V V+ G Sbjct: 77 GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGEA 136 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK-----------VMNLLNIAGEDQVTLKV 200 R+ ++S + L + V++ NIA Q+ +K+ Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKL 196 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 ++ EV + + + +G S S GG ++G LD + Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +AL+ + + LAEP ++ +SG++A GG+ + G+ ++ ++G+ L Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + RI L + VS N G++P + RKA + E+ +G + ++ GL + Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +PLL IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD + Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428 Query: 438 DDAKAFFF 445 + FF Sbjct: 429 GTMERFFH 436 >gi|307548787|dbj|BAJ19109.1| RcpA [Aggregatibacter actinomycetemcomitans] gi|307548802|dbj|BAJ19123.1| RcpA [Aggregatibacter actinomycetemcomitans] Length = 460 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV+ + S+ ++Q + + VS P AD + T ++ K Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151 G+ V G DG+ + + + ++ + + L+ ++N+ V+ V V+ G Sbjct: 77 GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKA 136 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200 R+ ++S + L + V++ NIA Q+ +K+ Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKL 196 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 ++ EV + + + +G S S GG ++G LD + Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +AL+ + + LAEP ++ +SG++A GG+ + G+ ++ ++G+ L Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + RI L + VS N G++P + RKA + E+ +G + ++ GL + Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +PLL IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD + Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVIYPD--FEKT 428 Query: 438 DDAKAFFF 445 + FF Sbjct: 429 GTMERFFH 436 >gi|8096202|dbj|BAA96101.1| unnamed protein product [Actinobacillus actinomycetemcomitans] Length = 460 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV+ + S+ ++Q + + VS P AD + T ++ K Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151 G+ V G DG+ + + + ++ + + L+ ++N+ V+ V V+ G Sbjct: 77 GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKA 136 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200 R+ ++S + L + V++ NIA Q+ +K+ Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKL 196 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 ++ EV + + + +G S S GG ++G LD + Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +AL+ + + LAEP ++ +SG++A GG+ + G+ ++ ++G+ L Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + RI L + VS N G++P + RKA + E+ +G + ++ GL + Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +PLL IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD + Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428 Query: 438 DDAKAFFF 445 + FF Sbjct: 429 GTMERFFH 436 >gi|318604223|emb|CBY25721.1| type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia enterocolitica subsp. palearctica Y11] Length = 410 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 105/403 (26%), Positives = 187/403 (46%), Gaps = 33/403 (8%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +++ ++ V VS AD + ++ ++ K G A IL + + IL++ Sbjct: 1 MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 I +R +S+I + + D+ +L G V T + + + + + Sbjct: 61 TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120 Query: 179 SSSK-------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 +V+N + + G +QV +K+TIAEV +D + IG S G+ SG Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + F + KF ++G ++HA+ + R LAEP L+ +SG+SA Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDGSIARVLAEPNLSVLSGESA 227 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IG 342 SF GG+ V+++ +T +T +G+ L+ V + RI +++ EVS Sbjct: 228 SFLVGGELPL--VNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 PS+R RKA TT+EL G + +L GL+ ++ + IP + IPILGA F N+ Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFSNAE 345 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 + +TE+ + AT LV+PV+ +++ P ++ + FF Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFFN 386 >gi|323493934|ref|ZP_08099051.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546] gi|323311875|gb|EGA65022.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546] Length = 441 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 107/442 (24%), Positives = 185/442 (41%), Gaps = 43/442 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +S+ + + + V V++ AD + + ++G G +VI+ Sbjct: 22 ASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKIIDENKVVVYGVGQGSTSVIVYDRG 81 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G ++ N ++++ + + L+ T+ D N+ V V D VVL G+V + + Q+ L Sbjct: 82 GNEIYNAELVVNQSLRLLKQTIIARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVG 141 Query: 166 TFLSQ-----------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L + + + + +V+N L + +Q+ +K+T+AEV Sbjct: 142 EMLKKERRRHTYELRDADGEEYDELDYTSRFTYDQVINNLKVLTTEQINVKLTVAEVSSS 201 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G +S +G G + +V+ A Sbjct: 202 FLTELGVTYSDSGE------------------PGKFVNKLLDFTAQDIVSVISASGDDKI 243 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + LAEP L+ ISG+ ASF +GG+ S++ +YGV L V I Sbjct: 244 GQVLAEPNLSVISGEQASFLAGGEIPIAVRDEDG--ISISYKEYGVKLAMVAKVTDSENI 301 Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS +P+ R R+A TTV L G + VLAGLL + ++ Sbjct: 302 RLTLIPEVSSIDESNKTSTGLISVPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTK 361 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP L IPILGALF ++ NR +TE+ I AT LV PV + P + D + Sbjct: 362 IPFLGDIPILGALFSHTTTNRSKTELIIVATVNLVDPVESEQVKLP--SFKRTSDIERLL 419 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 ++++ P+ +E + Sbjct: 420 RIDLSELNEPELEGTIEQGGFN 441 >gi|262173894|ref|ZP_06041571.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus MB-451] gi|261891252|gb|EEY37239.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus MB-451] Length = 419 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 106/439 (24%), Positives = 182/439 (41%), Gaps = 42/439 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ + + + V V+D T AD + + ++G G +VI+ G ++ Sbjct: 1 MNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGGNEI 60 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N ++++ + + L+ TL D +I V V D VVL G V + + + L L Sbjct: 61 YNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLK 120 Query: 170 Q------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + A V+N L + +Q+ +K+TIAEV L Sbjct: 121 KNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLS 180 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 ++G + G G ++ ++ A + Sbjct: 181 ELGVSYGDIGGGD----------------VGKFYNKLLDFTAQDIVAIIAASGNDDIGQV 224 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP L+ ISG++ASF GG+ T ++ +YG+ L V I L Sbjct: 225 LAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLS 282 Query: 332 IQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVS ++ + PS + RKA TTV+L G + VLAGLL + ++ IP+ Sbjct: 283 LLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPI 342 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L IPILGALF +++ +R++TE+ I AT LV PV + P + D + Sbjct: 343 LGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLLRID 400 Query: 448 VNKIYGPKEASEVEGQNYK 466 ++ + P+ + + Sbjct: 401 LSGVDEPELQRTINAGGFN 419 >gi|262275469|ref|ZP_06053279.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Grimontia hollisae CIP 101886] gi|262220714|gb|EEY72029.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Grimontia hollisae CIP 101886] Length = 454 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 107/425 (25%), Positives = 186/425 (43%), Gaps = 33/425 (7%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + I++G L+ + V +SDP AD V + +FG+ +G +I+ Sbjct: 25 QASAAGVINLGTGDARSLEFNAVIGTVFISDPDIADYQVIDSNKLVVFGRKLGTTTLIVF 84 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 D + + + I++ + + +E L D ++ V + + VVL G+V T ++ Sbjct: 85 DEDSQTLSHRKIVVNQSLTKIEQILAIRYPDVDVSVLNMGEQVVLTGVVPTQKEKNEIYA 144 Query: 163 LSETFLSQS----------------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + LS+ + A + + ++N L + QV +K+TIAEV Sbjct: 145 VVGELLSKKFVERRTQWKTSFDEEFDIDFMARRTYEGLVNNLEVTVTKQVNVKLTIAEVN 204 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 ++ ++G + F G G G + + A+ Sbjct: 205 SSLINELGIKW---------GTILEDGFAGNGQFFKGITGFGGRT--TNVAAYISAINDD 253 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + L+EP ++ ISG++ASF GG+ + ++G+ L VL Sbjct: 254 NVGQVLSEPNVSVISGETASFLVGGEIPITYRIDDG--YRIEYKEFGIGLDLAAEVLRDD 311 Query: 327 RIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + +VS G D+PS++VR+A TT+EL G + VLAGLL + ++ Sbjct: 312 KIKLSVMPQVSSVDNQYGDTLLDIPSFKVRRARTTLELGDGDSFVLAGLLSSEDEEALSK 371 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP + +PILGALFRN+ R +TE+ I AT LV+PV+ +++ P FF Sbjct: 372 IPFIGDVPILGALFRNTSTTRRKTELVIVATVSLVEPVSSANITIP--SIQRTSALSRFF 429 Query: 445 FNRVN 449 +N Sbjct: 430 GVNLN 434 >gi|119566857|gb|ABL84265.1| RcpA [Yersinia ruckeri] Length = 438 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 106/434 (24%), Positives = 191/434 (44%), Gaps = 34/434 (7%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + + + + I+ V ++ + S AD + ++ ++ K G A L Sbjct: 31 HAEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKK 90 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 K + + + +++ I+ + +R DS I + + + +L G +T + + ++ Sbjct: 91 NKPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVA 150 Query: 166 TFLSQ----SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + + Y S + N + I +QV +K+TIAEV +D IG S G Sbjct: 151 NAIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIG 210 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + SG + G T++ A+ + R LAEP L+ +S Sbjct: 211 NVSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLS 251 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340 G++ASF GG+ + + +T +V+ ++G+ L+ V RI +++ EVS Sbjct: 252 GETASFLVGGELPIVSTTQNT--INVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDK 309 Query: 341 --IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P+ R RKA TTVEL G + +L GL+ + ++ + IPL+ IPILGALF Sbjct: 310 MFNVDGGSSYPALRTRKAGTTVELGDGESFILGGLISREDKENLKKIPLIGDIPILGALF 369 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 R + + +E+ + AT LVKP+ +D+ PD + + FF N + + Sbjct: 370 RKTGTQTKRSELVVIATVNLVKPMQSKDVGLPD--FMKTSTLERFF----NYTFIRESKQ 423 Query: 459 EVEGQNYKGAIGFI 472 E + + GFI Sbjct: 424 EKLAKKFLSQGGFI 437 >gi|296124072|ref|YP_003631850.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] gi|296016412|gb|ADG69651.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] Length = 772 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 107/515 (20%), Positives = 198/515 (38%), Gaps = 64/515 (12%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAA--VINISDVEIGKGKKISIGLNKVIILQVPVD 65 + ++ L V + +++ A + + + + + + + ++ + Sbjct: 131 VPAVNALPLPQRAVPVRTVQDSNQSDTARQLHRLIESMPSSEEDLEVIHRRSQLIVTRAN 190 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI----------L 115 V ++DP DVV + PR + + G + G + L + L + Sbjct: 191 VIRAAIADPNVIDVVQYGPREISIIGVSRGTTTLTLWFEGAAEPLIYLVKVIRDPALDFQ 250 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR-- 173 D LE L+ +S + + +S +V+ G R +++ + + + Sbjct: 251 RRLDYGKLEKKLQTLFPNSKVYLIPMSYKIVVRGQARDAEEAAHILSIVRGEVINQEGSL 310 Query: 174 ---------------------------------NQYANSSSKKVMNLLNIAGEDQVTLKV 200 ++ ++ ++N L + GE QV+L V Sbjct: 311 GGPQPFLGGLGGDLGGGSSTIDNGAIGGIGNSFGGASDLAAGFIINELRVPGEFQVSLTV 370 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 IAE+ R + + G S+ + S +S GG ++ G+ D +L Sbjct: 371 RIAELNRSEMFKAGADISVLFNGSQLIESSLT---------GGAATLGGIFDNGDVSILL 421 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHF 318 L+ + L EP LT +SG+ A F +GG+ + S T +G + Sbjct: 422 DWLKTNGIGKILVEPRLTVLSGRQARFLAGGEFAVPTIIGIAGAQGQSTTFRGFGTSVLV 481 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TPTVL I L E S+ + +P R+ DTTVE+ G T+ LAGL + Sbjct: 482 TPTVLDRDLIRLSTIAEYSDLNQANSVQGIPGTNARRIDTTVEMREGQTLALAGLYSHLM 541 Query: 379 QQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR-PDDHYSV 436 + IP L IP +G ALF ++E E+ I TP +V+P+ ++ P + Sbjct: 542 KTNISKIPFLGDIPKIGPALFSRKEKTQDENELLILITPDIVRPMDPEEVPPVPGFEVTY 601 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNY-KGAIG 470 D + F++NR+ G + + Y G+ G Sbjct: 602 PGDHEFFWYNRIE---GTPDTGHYQVPPYGSGSNG 633 >gi|32473554|ref|NP_866548.1| outer membrane channel for pilus assembly CpaC [Rhodopirellula baltica SH 1] gi|32398234|emb|CAD78329.1| putative outer membrane channel for pilus assembly CpaC [Rhodopirellula baltica SH 1] Length = 589 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 113/455 (24%), Positives = 193/455 (42%), Gaps = 36/455 (7%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGK------KISIGLNKVIILQVPVDVQDV 69 L ++ +A L + A G + ++ + + IL + + Sbjct: 20 LLATAFGLAMLSVSQPVMAQSATTLASAAGDHQINQTVERMDLIVKSSRILSLGERIPRF 79 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 V + S + +FGK G + L + K + +D+ + D +E L Sbjct: 80 QVHNEEVLGATPVSENQIQVFGKTPGTTQINLWDTEDK-LYTIDVTVVADAREVEGILNS 138 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + +++RV + ++ ++ G V ++ D +AV ++E F + V+N + Sbjct: 139 QLPLASLRVTPIGESAIISGYVTSVDDVDKAVAITEQFYTT-------------VINNIQ 185 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFG-----GKFVS 240 + G QV L I EV R L+++G +I + GPS G F Sbjct: 186 VVGIQQVLLHTKIMEVSRTKLRELGVDLAILDDNFTLLNGPSGVLDVGAGIVEGDAGFGP 245 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + +FET+++AL + LAEPT+ A G+ A FT GG+ V Sbjct: 246 IPLGDTNLRFNVNGNFETLINALHEQRLTKLLAEPTVVATHGRPARFTVGGRIP-TIVPG 304 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKA 356 G +T DYG + F P V+ PGRI L ++ EVSEP VN ++ ++ R Sbjct: 305 QNGQVQITYEDYGTSIDFLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTTRYV 364 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T VE+ +G T LAGLL+ + P +P +G LFR + R E E+ I TP Sbjct: 365 ETAVEMQAGQTFALAGLLQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLILVTP 424 Query: 417 FLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN 449 LV+ + ++ R P + DD + + + + Sbjct: 425 ELVEAMDPHEVPRGGPGMNSHSPDDKEFYLYGHIE 459 >gi|254506218|ref|ZP_05118362.1| general secretion pathway protein D [Vibrio parahaemolyticus 16] gi|219551036|gb|EED28017.1| general secretion pathway protein D [Vibrio parahaemolyticus 16] Length = 431 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 105/413 (25%), Positives = 186/413 (45%), Gaps = 34/413 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++G + + ++ V +SDP AD V + +FGK VG +++ + + + Sbjct: 12 MNLGEGEAKAINTKAEIASVFISDPQIADYQVVDKNKLVIFGKKVGTVSLLAFDDNSETI 71 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 ++ +++ + + H++ ++ D +I + + + VVL G V + + L L+ Sbjct: 72 ISRKLVVNQSLIHIQQQVQIRYPDVSISIYNLGEQVVLAGKVPSEKIRDEINILVGELLN 131 Query: 170 QSGRNQY---------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + + K ++N + ++ QV +K++IAEV + L+Q G Sbjct: 132 KEYEDYKIEWDLGENTYEMEFMTRRHYKGIVNNIEVSTTKQVNVKLSIAEVSQSFLEQFG 191 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 ++ SS+ D F + +V+ A+ + LAE Sbjct: 192 VKYGTLDSSANFMGGTFVDQLINFSAA-------------DIVSVISAIGDDAVGQVLAE 238 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ ISG++ASF GG+ TV G T+V ++G+ L VL +I L + Sbjct: 239 PNLSVISGETASFLVGGEIPVVTVV--DGGTNVLFKEFGIRLEMMAKVLQDDKIKLSLMP 296 Query: 335 EVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 EVS +P+ + R+A TTVEL G + VL GLL + ++ +P + +P Sbjct: 297 EVSSLDTQYQNDRYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLSRVPFIGDVP 356 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 ILGALFR++ R +TE+ I AT LVKPV + P + FF Sbjct: 357 ILGALFRHTETVRNKTELVIVATVNLVKPVNPSQIQLPT--MKRTTTMQRFFN 407 >gi|238755450|ref|ZP_04616790.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473] gi|238706291|gb|EEP98668.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473] Length = 430 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 106/434 (24%), Positives = 191/434 (44%), Gaps = 34/434 (7%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + + + + I+ V ++ + S AD + ++ ++ K G A L Sbjct: 23 HAEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKK 82 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 K + + + +++ I+ + +R DS I + + + +L G +T + + ++ Sbjct: 83 NKPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVA 142 Query: 166 TFLSQ----SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + + Y S + N + I +QV +K+TIAEV +D IG S G Sbjct: 143 NAIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIG 202 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + SG + G T++ A+ + R LAEP L+ +S Sbjct: 203 NVSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLS 243 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340 G++ASF GG+ + + +T +V+ ++G+ L+ V RI +++ EVS Sbjct: 244 GETASFLVGGELPIVSTTQNT--INVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDK 301 Query: 341 --IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P+ R RKA TTVEL G + +L GL+ + ++ + IPL+ IPILGALF Sbjct: 302 MFNVDGGSSYPALRTRKAGTTVELGDGESFILGGLISREDKENLKKIPLIGDIPILGALF 361 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 R + + +E+ + AT LVKP+ +D+ PD + + FF N + + Sbjct: 362 RKTGTQTKRSELVVIATVNLVKPMQSKDVGLPD--FMKTSTLERFF----NYTFIRESKQ 415 Query: 459 EVEGQNYKGAIGFI 472 E + + GFI Sbjct: 416 EKLAKKFLSQGGFI 429 >gi|251791991|ref|YP_003006711.1| RcpA [Aggregatibacter aphrophilus NJ8700] gi|247533378|gb|ACS96624.1| RcpA [Aggregatibacter aphrophilus NJ8700] Length = 460 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 102/430 (23%), Positives = 190/430 (44%), Gaps = 29/430 (6%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV+ + S+ ++Q + + VS P+ AD + T ++ K+ Sbjct: 17 AVLGAMFSLNAYAQNFSLEKGATQLVQTKEKIDTIFVSSPSVADYEILDDNTFIIYAKDE 76 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151 G+A V G DG+ + + + ++ + ++ L+ ++N+ V+ V V+ G Sbjct: 77 GKAEVTAFGADGRPLTSDTVNVDSVVTNIADTNKQLKTHFPNTNLSVKKVGKAYVIEGKA 136 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200 RT ++S + L + ++ V++ NI Q+ +K+ Sbjct: 137 RTQEESDEVRRIVGEALGTGRKVTETKLGNESVPFLDKYSYEGVVDHSNINDTTQINVKL 196 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFET 258 T+ EV + + + +G S S GG F + GG +GVL D Sbjct: 197 TVVEVNKKLSEAMGINWSHIAGS-------GPLLGGNFSAAGGFNGTQGVLRLDAKGISA 249 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 ++AL+ + + LAEP ++ +SG++A GG+ + G+ S+ ++GV L Sbjct: 250 FINALDNQSNGKILAEPNISMLSGETADILVGGEIPFAQ-RDKEGSPSIIYKEFGVKLAV 308 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 + RI L + VS N G++P + R+A + E+ +G + ++ GL Sbjct: 309 AAKLQKNNRIRLVLDQSVSTLAGNYNFEGIGNIPYFDTRRAKSLFEVANGESFIIGGLFS 368 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 + + +PLL +PILG+ FRN+ NRE+ E+ I AT +VKPV +++ PD + Sbjct: 369 SNDVEGINKVPLLGDVPILGSFFRNASTNREKKELVIVATVNVVKPVEEKNIVYPD--FE 426 Query: 436 VEDDAKAFFF 445 + FF Sbjct: 427 QTGTMERFFH 436 >gi|238793622|ref|ZP_04637245.1| Type II/III secretion system protein [Yersinia intermedia ATCC 29909] gi|238727037|gb|EEQ18568.1| Type II/III secretion system protein [Yersinia intermedia ATCC 29909] Length = 425 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 106/420 (25%), Positives = 183/420 (43%), Gaps = 30/420 (7%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A I + V K + + + I++ ++ V VS AD + ++ ++ K Sbjct: 4 AIAICQTVVNQAYAKPVYLSSGESYIIKTEEEIDTVFVSTAAIADYELVGKNSIIVYAKK 63 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G A IL D M+ I++ I ++ DSN+ + + ++ +L G + Sbjct: 64 EGTAEFILFNKDNHPMIKTTIMVNDIITSAYQRIKIEYPDSNVEINKIGNSYLLTGKAES 123 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + +++ + V+N + + +QV +K+TIAEV +D Sbjct: 124 EEAKDTIAAIIGEAINKKREQNREDQHFNNPNYLGVINKIKLPESNQVNVKLTIAEVTKD 183 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 + IG S +S S F + T++HA+ + Sbjct: 184 FSENIGVDWSSISEASVGSFKFL------------------KFNATGISTLVHAINDDSI 225 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 R LAEP L+ +SG+SASF GG+ + ++ T + YG+ L+ V RI Sbjct: 226 ARVLAEPNLSVLSGESASFLVGGEIPMFNTNQNS--TIIKYKTYGIKLNIAAKVNEKNRI 283 Query: 329 GLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + ++ EVS PS R RKA TT+EL G + +L GL+ ++ + I Sbjct: 284 RISMEEEVSSVDKVFNVEGGNAYPSLRTRKAATTLELGDGESFILGGLISKSERESLKKI 343 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P + IPILGA FRN++ +++TE+ + AT LV PVA +D+ PD + + F Sbjct: 344 PFIGDIPILGAFFRNAQTQKQQTELVVVATVSLVNPVAGKDVELPD--FMHTSTLERLFN 401 >gi|293391332|ref|ZP_06635666.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter actinomycetemcomitans D7S-1] gi|32452623|gb|AAP43985.1| RcpA [Aggregatibacter actinomycetemcomitans] gi|290951866|gb|EFE01985.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 460 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV+ + S+ ++Q + + VS P AD + + ++ K Sbjct: 17 AVLGAMSSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNSFIIYAKEE 76 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151 G+ V G DG+ + + + ++ + + L+ ++N+ V+ V V+ G Sbjct: 77 GRTEVTAFGVDGRPLTSDTVNVDSVVTSIADTNKQLKSHFPNTNLSVKKVGKAYVIEGKA 136 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200 R+ ++S + L + V++ NIA Q+ +K+ Sbjct: 137 RSQEESDEVRRIVGEALGNGRKITETKLGEDALPFLDKYHYDGVVDNANIADTTQINVKL 196 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 ++ EV + + + +G S S GG ++G LD + Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLLGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +AL+ + + LAEP ++ +SG++A GG+ + G+ ++ ++G+ L Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDKDGSPTIIYKEFGIKLAVAA 310 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + RI L + VS N G++P + RKA + E+ +G + ++ GL + Sbjct: 311 KLQKNDRIRLALDQSVSTIAGNYNFEGVGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +PLL IPILG+ FRN+ R++ E+ I AT +VKPV +D+ PD + Sbjct: 371 DLEGINKVPLLGDIPILGSFFRNATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428 Query: 438 DDAKAFFF 445 + FF Sbjct: 429 GTMERFFH 436 >gi|26000712|gb|AAN75208.1| RcpA [Aggregatibacter actinomycetemcomitans] Length = 460 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 93/428 (21%), Positives = 179/428 (41%), Gaps = 25/428 (5%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV+ + S+ ++Q + + VS P AD + T ++ K Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151 G+ V G DG+ + + + ++ + + L+ ++N+ V+ V V+ G Sbjct: 77 GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKA 136 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK-----------VMNLLNIAGEDQVTLKV 200 R+ ++S + L + V++ NIA Q+ +K+ Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKL 196 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 ++ EV + + + +G S S GG ++G LD + Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +AL+ + + L EP ++ +SG++A GG+ + G+ ++ ++G+ L Sbjct: 252 NALDNQSNGKVLPEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + RI L + VS N G++P + RKA + E+ +G + ++ GL + Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +PLL IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD + Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVIYPD--FEKT 428 Query: 438 DDAKAFFF 445 + FF Sbjct: 429 GTMERFFH 436 >gi|238782881|ref|ZP_04626910.1| Type II/III secretion system protein [Yersinia bercovieri ATCC 43970] gi|238716304|gb|EEQ08287.1| Type II/III secretion system protein [Yersinia bercovieri ATCC 43970] Length = 426 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 104/409 (25%), Positives = 186/409 (45%), Gaps = 31/409 (7%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 K + I + I++ ++ V VS AD + + ++ ++ K+ G +IL Sbjct: 17 ANAKSVYISPGESYIIKTEAEIDTVFVSSAAVADYELVNKNSIIVYAKSEGTTEIILFDD 76 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 + + IL+ I + DSNI ++ + D+ +L G+V + ++ + Sbjct: 77 KHQVLAKKTILVNNIINAANKRVLIEYPDSNIDIDKIGDSYILTGIVESEEEKDTLATIV 136 Query: 165 ETFLSQSGRNQY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + ++N L + +QV +K+TIAEV +D + +G S Sbjct: 137 GEAIGSQKEKTSERQYLSTPDYAHIVNKLKLPQANQVNVKLTIAEVTKDFTENVGVDWST 196 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G + G + + G T++HA+ + R LAEP L+ Sbjct: 197 MGDAIGSFQFVKFNANG-------------------ISTLVHAINDESIARVLAEPNLSV 237 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 +SG+SASF GG+ S++ + +VT ++G+ L+ V RI + + EVS Sbjct: 238 LSGESASFLVGGEIPI--ASNTENSQTVTYKEFGIKLNIGAKVNEKKRIRILLNEEVSSI 295 Query: 340 VIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 PS + RKA TT+EL G + +L GL+ + ++ + IP + IPILGA Sbjct: 296 GKSFSMEGGDSYPSLKTRKAATTLELGDGESFILGGLISNSERESLKKIPFIGDIPILGA 355 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 LFRN++ + +TE+ + AT LVKPV+ +++ PD + + F Sbjct: 356 LFRNAQTEQSQTELVVIATVNLVKPVSRKEIELPD--FMHTSTLERLFN 402 >gi|312116090|ref|YP_004013686.1| type II and III secretion system protein [Rhodomicrobium vannielii ATCC 17100] gi|311221219|gb|ADP72587.1| type II and III secretion system protein [Rhodomicrobium vannielii ATCC 17100] Length = 519 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 119/494 (24%), Positives = 209/494 (42%), Gaps = 55/494 (11%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPP--------------IKEANAAVINISDVEIGKGKKI 50 RT ++ S ++ AA + + Sbjct: 15 SRTLKLLICTIFLGLGASAYATEKPPSPVPPSKQPVKKVQGFGAAAPLYHLNTQNERIDV 74 Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 + LN+ ++V + LV++ ADVV + ++ + GK +G + L+ D + + Sbjct: 75 RVVLNRSENVKVEYPFTEALVTNSDIADVVPLTNASINILGKKIGNTRLSLLDQDKRVIG 134 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 +DI + D+ L +R + SN+RV V+ +++ G RA+ L+E F Sbjct: 135 IVDIEVSHDVDMLRRVMRDNPSFSNLRVAAVNGRIMIAGQASDAVALSRALALAEQF--- 191 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK------------------- 211 + +V N + +A QV L+V E R++ + Sbjct: 192 ---------APGQVTNAMTVASPQQVMLEVRFIEASRNLARGVGVNVSGGGRYAGGTTGV 242 Query: 212 -QIGFQHSITGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETVLHALERAT 267 + + SIT S+G + + +D S G + + + + + ALE Sbjct: 243 ETLKEKSSITSDSTGITTNLISDLAAGLGSNLVPFGAMTGRVIGGSAPIDVTIRALESQG 302 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 R LAEP L A+SG +ASF +GG+ + V+ + + +G+ L FTPTVL+ + Sbjct: 303 LARRLAEPNLVALSGDTASFLAGGEFPFP-VAGTNNTITTEFKKFGIGLAFTPTVLARRQ 361 Query: 328 IGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 I L+I+ EVSE + ++P VR+A TTVEL G + +AGL++ Sbjct: 362 INLKIEPEVSEIDYSAAVKIGNVEVPGLSVRRASTTVELRDGQSFAIAGLMQGFHNADTR 421 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSVEDDAKA 442 +P + +PILGAL R++ F ++ET++ I TP LV+P+ D P + +D + Sbjct: 422 QLPWIGDVPILGALTRSTSFQKKETDLVIIVTPCLVQPMVPGDAQGSPLANRRPGNDEEF 481 Query: 443 FFFNRVNKIYGPKE 456 F + Sbjct: 482 FIAGKQEVQTSRPR 495 >gi|323495637|ref|ZP_08100708.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp pilus assembly [Vibrio sinaloensis DSM 21326] gi|323319272|gb|EGA72212.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp pilus assembly [Vibrio sinaloensis DSM 21326] Length = 440 Score = 259 bits (661), Expect = 8e-67, Method: Composition-based stats. Identities = 103/413 (24%), Positives = 181/413 (43%), Gaps = 38/413 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++G + + ++ V +S+P AD V + +FGK VG +++ + + Sbjct: 25 VNLGEGEAKAITTKQEIASVFISNPEIADYQVVDKNKLVVFGKKVGSVSLLAFDDNSNTI 84 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 ++ +++ + + H++ ++ + +I + + + VVL G V + + L L Sbjct: 85 VSRKLVVNKSLIHIQQQIQLRYPNISISLYNLEEQVVLAGKVPSEKIRDEINILVGELLE 144 Query: 170 QSGRNQY---------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + + ++N + +A QV +K++IAEV + L++ G Sbjct: 145 KEYEDHKIEWKIGTETYEMEFMTRRHYLGIVNNIEVATTKQVNVKLSIAEVSQSFLEEFG 204 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 Q+ +G +G +F +V+ AL T + LAE Sbjct: 205 VQYGSSGQGAGTFVDQLVNFSAS-----------------DIVSVITALGDDTVGQVLAE 247 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ ISG+SA F GG+ T+ G T+V ++G+ L VL +I L + Sbjct: 248 PNLSVISGESAHFLVGGELPVVTII--DGGTNVLYKEFGIRLEMMAKVLEDDKIKLSLLP 305 Query: 335 EVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 EVS +P+ + R+A TTVEL G + VL GLL + ++ +P + +P Sbjct: 306 EVSSIDSQYQNERYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLRRVPFIGDVP 365 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 ILGALFR+S R TE+ I AT LV PV + P + FF Sbjct: 366 ILGALFRHSETVRNRTELVIVATVNLVNPVNPSQIQLPT--MKRTTTMQRFFN 416 >gi|85707702|ref|ZP_01038768.1| type II secretion system protein [Erythrobacter sp. NAP1] gi|85689236|gb|EAQ29239.1| type II secretion system protein [Erythrobacter sp. NAP1] Length = 576 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 126/484 (26%), Positives = 213/484 (44%), Gaps = 67/484 (13%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 + +I I + + ++QVP + DV V++ ADV + S R +Y+FG++ G+ + Sbjct: 59 QQVVSPSDEIVISIGRGELVQVPGTMTDVFVANENVADVQIKSQRQLYVFGRSGGETTIY 118 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQR 159 G+ + + ++ + +I ++ L + ++ + V + +TV+L G V +D+ Sbjct: 119 ASDARGEVIFSANVRVGSNIGSIDQMLALAMPEAQVNVATMGTNTVLLTGTVAAPEDAAE 178 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ------- 212 A L FL + V+ L A QV L+V AEV R +++ Sbjct: 179 AERLVTAFLGEQA----------NVITRLKTATPLQVNLQVKFAEVSRSLVRAVSGNLTT 228 Query: 213 -----------------------------IGFQHSITGSSSGPSKSFAADF--------- 234 +G + GP Sbjct: 229 FDASTGGFRGAVGTGRTLGAGEFDFRNGPLGVGSGVQNPVVGPFIDPTTGLPILDANGNP 288 Query: 235 ----GGKFVSEGGDFSVKGVLDRFSFETV--LHALERATAIRTLAEPTLTAISGQSASFT 288 G S ++ G+ F + + L ER I T+++P LTA+SG++A+F Sbjct: 289 LTFTGPGIDSGTAGTTIAGLGRLFGLDALGALDLSERLGLITTISQPNLTALSGETATFL 348 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344 +GG+ G ++ ++GV L +TPTVLS GRI +R++ EVSE + +N Sbjct: 349 AGGEFPIPIS-QGLGNVAIEYRNFGVSLAYTPTVLSNGRISIRVRPEVSELSSQGAVTLN 407 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ +R+ +TTVEL SG + ++AGLL ++ Q + P L +PILG LFR+ F Sbjct: 408 GFQVPALTIRRTETTVELGSGQSFMIAGLLSNNAQNALDKAPGLGDVPILGNLFRSRDFR 467 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 R ETE+ I TP+LVKPV D++ P D Y ++ + F R N + Sbjct: 468 RGETELVIVVTPYLVKPVNASDIALPTDGYHSANELEQFIGFRDNDGVSGERRPGPTAAE 527 Query: 465 YKGA 468 Sbjct: 528 PDAP 531 >gi|86147184|ref|ZP_01065500.1| general secretion pathway protein D [Vibrio sp. MED222] gi|85835068|gb|EAQ53210.1| general secretion pathway protein D [Vibrio sp. MED222] Length = 439 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 109/404 (26%), Positives = 178/404 (44%), Gaps = 38/404 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 ++ + + ++ V +S AD V + +FGKN+G A+ I Sbjct: 20 AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAK 79 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+++ N +L+ + +E + D+ + V + + VVL G+V Q+ +L Sbjct: 80 GRELFNRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVG 139 Query: 166 TFLSQSGRNQYANSSSK----------------KVMNLLNIAGEDQVTLKVTIAEVRRDI 209 L ++ + S + V+N + I+ QV +K+TIAEV Sbjct: 140 ELLGKTANSTSFQMSDEESDDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSF 199 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 ++ G + G + G +V+ AL + Sbjct: 200 MQDFGIKMGSNG------------------TPGIFVDQLTHFSASDIVSVISALGTDSVG 241 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + LAEP L+ ISG+ ASF GG+ TV GAT+V ++GV L VL +I Sbjct: 242 QVLAEPNLSVISGEKASFLVGGELPVVTVI--DGATNVEYKEFGVRLELLAKVLRDDKIK 299 Query: 330 LRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L + EVS ++ + +P+ R R+A TTVEL G + VL GLL + ++ IP Sbjct: 300 LALTPEVSSLDGSYSSDNFDLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPY 359 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + IPI+GALFR++ R +TE+ I AT LV+PV + P Sbjct: 360 IGDIPIIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPT 403 >gi|218708107|ref|YP_002415728.1| putative bacterial type II secretion system protein D; rcpA, CpaC [Vibrio splendidus LGP32] gi|218321126|emb|CAV17076.1| putative bacterial type II secretion system protein D; rcpA, CpaC [Vibrio splendidus LGP32] Length = 435 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 109/404 (26%), Positives = 178/404 (44%), Gaps = 38/404 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 ++ + + ++ V +S AD V + +FGKN+G A+ I Sbjct: 16 AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAK 75 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+++ N +L+ + +E + D+ + V + + VVL G+V Q+ +L Sbjct: 76 GRELFNRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVG 135 Query: 166 TFLSQSGRNQYANSSSK----------------KVMNLLNIAGEDQVTLKVTIAEVRRDI 209 L ++ + S + V+N + I+ QV +K+TIAEV Sbjct: 136 ELLGKTANSTSFQMSDEESDDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSF 195 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 ++ G + G + G +V+ AL + Sbjct: 196 MQDFGIKMGSNG------------------TPGIFVDQLTHFSASDIVSVISALGTDSVG 237 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + LAEP L+ ISG+ ASF GG+ TV GAT+V ++GV L VL +I Sbjct: 238 QVLAEPNLSVISGEKASFLVGGELPVVTVI--DGATNVEYKEFGVRLELLAKVLRDDKIK 295 Query: 330 LRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L + EVS ++ + +P+ R R+A TTVEL G + VL GLL + ++ IP Sbjct: 296 LALTPEVSSLDGSYSSDNFDLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPY 355 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + IPI+GALFR++ R +TE+ I AT LV+PV + P Sbjct: 356 IGDIPIIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPT 399 >gi|302391029|ref|YP_003826849.1| type II and III secretion system protein [Acetohalobium arabaticum DSM 5501] gi|302203106|gb|ADL11784.1| type II and III secretion system protein [Acetohalobium arabaticum DSM 5501] Length = 414 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 97/375 (25%), Positives = 169/375 (45%), Gaps = 27/375 (7%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + +G K +L+V VD++ V+DP AD+V S + + GK+ G + L G + Sbjct: 34 LQLGTGKSELLKV-VDLERAAVADPEVADIVTISQEELLINGKSEGTTTLHLWDQKGHR- 91 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + + + ++ A + ++ I ++V V + ++L G VR QR +++ F Sbjct: 92 -SYQVEVYKEEARVIKQIKELIGTDTVKVAKVEENIILSGKVRDQTQLQRVKKIAGVF-- 148 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 +KV+N L + QV L + E+ + + +++GF S Sbjct: 149 -----------GEKVINELQVTNSLQVLLAAQVFEIDKAVSEELGFDWYS-----TNSGG 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + + F + + T L AL + LA+P L SGQ ASF Sbjct: 193 VESGTATLGETTTSRFGIGHYERLYQLRTKLKALIEDGKAKLLAKPKLVTKSGQKASFNV 252 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----N 344 GG+ T SS T V +YGV PTV G++ + +VS+ N Sbjct: 253 GGEIPVVTADSSGEQTVV-WKNYGVQFEVEPTVTPTGKLETYLHPKVSQLDWANAVDYGN 311 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +G +P+ + + T V + G + + GLL+ + + IPLLS++PILG LF++ F Sbjct: 312 SGQLPAIKSSEVKTQVVIKDGAALAIGGLLQQYRSEDIKRIPLLSQLPILGELFKSKSFR 371 Query: 405 REETEIFIAATPFLV 419 E++E+ I TP ++ Sbjct: 372 EEKSELIILVTPKII 386 >gi|294102189|ref|YP_003554047.1| type II and III secretion system protein [Aminobacterium colombiense DSM 12261] gi|293617169|gb|ADE57323.1| type II and III secretion system protein [Aminobacterium colombiense DSM 12261] Length = 384 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 102/423 (24%), Positives = 168/423 (39%), Gaps = 45/423 (10%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M L+R + ++ + + + + +L Sbjct: 1 MACLKRKLWVFFAVVFLTVVVGALPVLAA-------------------TYHLDVGDSAVL 41 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + +V+ + V +P D + + L GK G A +I+ G M + + + Sbjct: 42 KY-QNVKRMSVGNPDVLDAIPLDNNQVLLTGKVEGGAALIVWDAAGMHMEKILVHPSIEA 100 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 E L+ + NI V + VVL G V+T +D RAV ++ F Sbjct: 101 PSWE--LKELLQAENIDVTVRGGAVVLEGKVKTPRDRLRAVAIAGAF------------- 145 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 +KV+NLL + Q+ L+ + EV++ +G G +F F + Sbjct: 146 GEKVINLLEVDSAPQIKLRAVVMEVKKKDGDALG-----MKRLEGQEGTFWGIFDLTPDT 200 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 KG ++AL + L+ P LT +SG+ AS GG+ Sbjct: 201 GHMLDYTKGAHYSAKINAWINALVENKEAKILSRPYLTTLSGEEASLNVGGEIPVPVGVD 260 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKA 356 + + YGV++ FTP + G I L + EVSE I +P+ R RK Sbjct: 261 NN-EIKIEWKPYGVIMKFTPELDGIGEIWLTFEAEVSEIDWENAIETQGIKIPAIRTRKI 319 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 V L ++V+ GLL + +L + IPLL IPI+G LF++ F +ETE+ I TP Sbjct: 320 ANKVRLGHNESLVVGGLLDNKQSKLVKKIPLLGDIPIIGELFKSREFTNDETELVITVTP 379 Query: 417 FLV 419 +V Sbjct: 380 EVV 382 >gi|239814526|ref|YP_002943436.1| type II and III secretion system protein [Variovorax paradoxus S110] gi|239801103|gb|ACS18170.1| type II and III secretion system protein [Variovorax paradoxus S110] Length = 504 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 123/453 (27%), Positives = 204/453 (45%), Gaps = 59/453 (13%) Query: 54 LNKVIILQVPVDVQDVLVSD----------------------------PTKADVVV--HS 83 L K +++ + V ++VS ADV V S Sbjct: 68 LGKSVVIPLKARVARIVVSGQPPSRAPAAAPAAAGQPAPAPATAANAGDGIADVDVTLLS 127 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVS 142 P ++ G+ G NV+L DG D+++ D L+ L + + N IRV Sbjct: 128 PTDLFFRGRQAGSMNVVLQSVDGTC-YIKDVIVTIDPGALQSKLAELMPEENHIRVRSAE 186 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 ++VL G + + L+ + + KKV+NLL + QV L+V I Sbjct: 187 KSIVLTGEISDALKLDDVMSLAMAY----------GADGKKVVNLLRVTAPQQVMLEVKI 236 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 AEV + +L ++G + + S +G + F+S GG + R S + Sbjct: 237 AEVSKTLLDRLGARVGL--SRTGGGGRDSYSLISSFLSGGGGLLEAIRIGRTSVG--IDG 292 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLHF 318 + +R LAEP + AISGQ ASF SGG+ S ++ ++G+ + F Sbjct: 293 QKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSAAGGGGTNITLEEKEFGIGVKF 352 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVL 370 TPTVL+ GR+ L++ +EVS+ + +PS VR+ADTTV+L G + V+ Sbjct: 353 TPTVLNGGRVNLKMISEVSDLSQTGSPFTTVTGVTAVLPSLTVRRADTTVQLNDGQSFVI 412 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGL+K ++ + + P L ++P++GALFR++ F ++TE+ TP LV+P+A P Sbjct: 413 AGLIKSNVTESIKRYPGLGEVPVMGALFRSTEFQNDQTELMFVITPRLVRPLA-EAPRVP 471 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 D++ V A+ + + A + Q Sbjct: 472 TDNHVVPSRAEVYLNGSLESATPAPVAPAGQPQ 504 >gi|171921001|gb|ACB59184.1| RcpA [Actinobacillus suis ATCC 33415] Length = 460 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 92/424 (21%), Positives = 176/424 (41%), Gaps = 25/424 (5%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 + K ++ + +++ + V VS P AD + T L+ K G+A + Sbjct: 20 AFSHTAAAKTFTLEQGQSQLIKTDAKIDTVFVSSPDIADYEILDDNTFMLYAKAEGRAEI 79 Query: 100 ILIGHDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 + DG + +IA ++ +SN+ V+ + V+ G + + Sbjct: 80 VAFDVDGTPLTEDFINVNNAINNIAATNEQIQTRFPNSNLSVKKIGKAYVIEGKAKNAAE 139 Query: 157 SQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQVTLKVTIA 203 S+ + L + A + ++N N Q+ +K+T+A Sbjct: 140 SEEINRIVGESLGAGKKVVEAKVEGSEDAIPFLDKYQYEGIINNANEEDATQINVKLTVA 199 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 EV + +IG + + + AA GG S G +++ + +L AL Sbjct: 200 EVNKTFSDEIGINWNNLSGNFFRNLGSAAINGGFGKSGGQ----LALVNSNNLNVLLSAL 255 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + + LAEP ++ +SG++A GG+ + + G +V ++G+ L V Sbjct: 256 DNQNNGKILAEPNISMLSGETADILVGGEVPFVQ-RNRDGELNVLYKEFGIKLAVGAKVQ 314 Query: 324 SPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L + VS ++ +P + R++ +T E+ +G + +++GLL + Sbjct: 315 KSDRIRLLLSQSVSTIAGNYEIDDNHIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEG 374 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 + +P L +PILGA FR++ +RE E+ + AT LVKPV + P + + Sbjct: 375 IKKVPFLGDVPILGAFFRSANSSRESKELVVVATVNLVKPVDGSQILYPT--FENTGTME 432 Query: 442 AFFF 445 FF Sbjct: 433 RFFN 436 >gi|320158383|ref|YP_004190761.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] gi|319933695|gb|ADV88558.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] Length = 441 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 104/448 (23%), Positives = 187/448 (41%), Gaps = 43/448 (9%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 + + + + +++ + + + V V DP AD + + ++G G +V Sbjct: 16 ASLSVNSNELMNLNQGSAKTISLKRQISTVFVGDPEIADYKIIDETKVVVYGVGQGATSV 75 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I+ G ++ N ++++ + + ++ TL D +I + V + VVL G+V + + + Sbjct: 76 IVYDRAGNELYNAEVVVNKSLRLVKQTLIARFPDESINITNVGEQVVLDGVVSSDEIKTQ 135 Query: 160 AVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 L ++ + A ++N L + +Q+ +K+T+ Sbjct: 136 IYRTVGEMLKKNSTRDTFTLKDANGDEVDSLDYTATYIYDNIINNLKVLTTEQINVKLTV 195 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 AEV L ++G +S +G G + V+ A Sbjct: 196 AEVSSSFLSELGVSYSDSGQ------------------AGRFVNKLLDFTAQDIVAVITA 237 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 R LAEP L+ ISG++ASF GG+ +++ +YGV L V Sbjct: 238 SGDDQIGRVLAEPNLSVISGETASFLVGGEIPIAIRDEDG--ITISYKEYGVKLSMVAKV 295 Query: 323 LSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 I L + EVS ++P+ R RKA TTV+L G + VLAGLL + Sbjct: 296 TDSENIRLSLLPEVSSIDEENKTANGLINVPALRTRKAQTTVQLKDGQSFVLAGLLTSEE 355 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 ++ IP+L IPILGALF +++ N+ +TE+ I AT LV PV D+ P + Sbjct: 356 RESLSKIPVLGDIPILGALFSHTKSNQTKTELIIVATVNLVDPVKAEDIKLP--SFRRTS 413 Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYK 466 D + ++ + P+ + + Sbjct: 414 DIERLLRIDLSSMNEPELEDTLNKGGFN 441 >gi|296121060|ref|YP_003628838.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] gi|296013400|gb|ADG66639.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] Length = 622 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 111/495 (22%), Positives = 195/495 (39%), Gaps = 41/495 (8%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAK---LPPIKEANAAVINISDVEIGKGKKISIGLNKVI 58 R+ + + F S P + + + NA V K+ I Sbjct: 9 RWRAALVWGLCLCQSFLSYPGLTSSSGMAFAQNGNAPVAGEVVQITASRTKLEIAERFAR 68 Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++Q P + V DP V + + + G G +++ +G + +D+++ Sbjct: 69 VVQFPRKILRVDGFDPAVLSVTALAHDQLRVQGITEGITTMVITDENGA-ITTIDVMVAG 127 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L R ++++ V + D V+L G V Q V++++ + Sbjct: 128 DARLLQAVLSREYPNTSVTVTKLKDNVLLRGWVVEPQQITEIVDIAKLYYP--------- 178 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------ 232 V+N + + G QV L+ + EV+R L+ +G + G + S + A Sbjct: 179 ----NVLNQMKMGGPQQVQLRCKVMEVQRSKLRSLGLNFTYLGRNVAFSSTPGAISPLDA 234 Query: 233 ------DFGGKFVSEGG----DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G +++ G S+ V D F+F +L AL ++ AEPT+ SG Sbjct: 235 FTVPIGGPPGVGLAQSGFRNATMSLGIVGDDFAFGGLLEALREEGLLKIQAEPTIVTRSG 294 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 + A SGG+ V G ++ ++GV L P +LSP R+ I EVSE Sbjct: 295 EPAKIVSGGEFPIP-VPQGLGTIAIEWREFGVRLESVPMILSPNRLKQTIIAEVSERDLT 353 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + +N+ +P R +T VE+ G T+ + GL+ IP L ++P +GA F Sbjct: 354 NAVTLNSTTVPGLTKRTVETQVEMNFGQTLAIGGLISSRKTAQTSKIPFLGELPYVGAAF 413 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKI-YGPK 455 R ++ ETE+ + TP V + + P +V D + F + YG Sbjct: 414 RRVNYDEAETELLVLITPEFVSAMDPAQVPDRLPGTASAVPTDRELFGQGIIEVPNYGDP 473 Query: 456 EASEVEGQNYKGAIG 470 + G Sbjct: 474 CPNCGPRGGSSTPSG 488 >gi|33152386|ref|NP_873739.1| rough colony protein A [Haemophilus ducreyi 35000HP] gi|21326707|gb|AAL92467.1| RcpA [Haemophilus ducreyi] gi|33148609|gb|AAP96128.1| rough colony protein A [Haemophilus ducreyi 35000HP] Length = 456 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 84/418 (20%), Positives = 183/418 (43%), Gaps = 24/418 (5%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 K ++ + +++ + + VS P AD + + L+ K G+ +++ Sbjct: 23 PSLAKTFNLEQGQTKLIKTKTKIDTIFVSSPEVADYQILDDNSFMLYAKGEGKTEIVVFD 82 Query: 104 HDGKQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 +G + + + +I+ ++ +SN+ V+ + V+ G + +++ Sbjct: 83 FEGNALTEDVVSVNNMINNISETNQQIQTRFPNSNLTVKKIGKAYVVEGKAKNEAETEDV 142 Query: 161 VELSETFLSQSGRNQYANSSSKKV-----------MNLLNIAGEDQVTLKVTIAEVRRDI 209 + + L N + ++V +N + Q+ +K+T+AEV + Sbjct: 143 IRVVGEALGAGKNVTSKNLAGEQVPFLNNYQYEGIINNTTASDATQINVKLTVAEVNKKF 202 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 +IG S + + + A GG G + ++++ + + ++ AL+ + Sbjct: 203 SDEIGIHWSNLSGNFFKNLTNLAIQGG----FGPEGGKLALVNQDNLQMLVTALDNQSNG 258 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + LAEP ++ +SG++A GG+ + G+ +V ++G+ L + RI Sbjct: 259 KILAEPNISMLSGETADILVGGEVPI--IERKDGSPTVKYKEFGIKLAVGAKLQKNDRIR 316 Query: 330 LRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L + EVS ++ +P + R++ +T E+ +G + +++GLL + + +P Sbjct: 317 LALSQEVSTIAGSFKLDQDSLPIFNTRRSKSTFEVGNGESFIVSGLLNKEDIESITKVPG 376 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 L IPILGA FR++ +R E+ + AT LVKPV ++ P + + FF Sbjct: 377 LGDIPILGAFFRSANTSRGSKELVVIATVNLVKPVDGSEILYPT--FENTGTMERFFN 432 >gi|15602717|ref|NP_245789.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70] gi|12721161|gb|AAK02936.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70] Length = 470 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 95/424 (22%), Positives = 174/424 (41%), Gaps = 30/424 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 K ++ +++ + + VS P+ AD + + ++ K G+A V G DG Sbjct: 28 SKTFNLEQGGTKLVRTDEKIDTIFVSSPSVADYEILDDNSFIIYAKEEGRAEVTAFGQDG 87 Query: 107 KQMLNLDILIERDIAHLE------MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 K + I + I+++ ++ +SN+ V+ V V+ G RT ++S+ A Sbjct: 88 KPLTTDFINVNPLISNINDISDTNRQIKARFPNSNLSVKKVGKAYVIEGKARTQEESEEA 147 Query: 161 VELSETFLSQSGRNQYANSSS----------------KKVMNLLNIAGEDQVTLKVTIAE 204 + L S + + + V+N ++A Q+ +K+++ E Sbjct: 148 HRIVGEALGNSKKVTETSFNRSEGVKEYIPFLDKYQFDGVINNASVADSTQINVKLSVVE 207 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V + + + +G S G ++ ++AL Sbjct: 208 VNKKLTEALGINWGRVVGVH--SGPLLGGSVSLSGGFSGSGGSTLNINATGVSAFINALN 265 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + LAEP+++ +SG++A GG+ + AT + ++GV L V Sbjct: 266 NQDNGKILAEPSISLLSGETADILVGGELPFAQKDKEGSATII-YKEFGVKLIVGAKVQK 324 Query: 325 PGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L + VS N G +P + R+A + E+ G + ++ GL + Sbjct: 325 NKRIRLALDQSVSTIAGSYAYDNVGTVPYFNTRRAKSIFEVADGESFIIGGLFSSQDAEG 384 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL IPILG+ FRN+R +RE+ E+ I AT +VKPV D+ P + + Sbjct: 385 INKVPLLGDIPILGSFFRNARTDREDKELVIVATVNVVKPVHESDIVYPT--FEQTGTME 442 Query: 442 AFFF 445 FF Sbjct: 443 RFFN 446 >gi|328470518|gb|EGF41429.1| rough colony protein RcpA [Vibrio parahaemolyticus 10329] Length = 447 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 111/452 (24%), Positives = 189/452 (41%), Gaps = 38/452 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V + + G+ +S+ + V ++ V V+D AD V + + ++G G Sbjct: 13 VALLLPASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRG 72 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 ++I G ++ N ++++ + + L+ T+ D +I++ + + +V+ G+V + + Sbjct: 73 ATSIIAYDRAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEE 132 Query: 156 DSQRAVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTL 198 + L +S + + A + ++N L + DQ+ + Sbjct: 133 IKDKVYRHVGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINV 192 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 K+T+AEV L ++G + A G G + Sbjct: 193 KLTVAEVSSSFLTELGVSY-------------AETNGKSIGGAGQFVNKILDFTAEDIVA 239 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 V+ A + + LAEP L+ ISG+SASF GG+ SVT +YGV L Sbjct: 240 VISASGNDSIGQVLAEPNLSVISGESASFLVGGEIPITV--RDNDGISVTYKEYGVKLSM 297 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLL 374 V I L + EVS +PS R RKA TTV+L G + VLAGLL Sbjct: 298 VAKVTDSENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLL 357 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 + Q+ IP L IPILGALF + R +TE+ I AT LV PV D+ P + Sbjct: 358 TSEEQESLAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP--KF 415 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 D + ++K+ + + ++ + Sbjct: 416 KRTSDLERLLKLDLSKVDDEELENTIKAGGFN 447 >gi|327538064|gb|EGF24754.1| bacterial type II/III secretion system protein [Rhodopirellula baltica WH47] Length = 758 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 109/496 (21%), Positives = 186/496 (37%), Gaps = 62/496 (12%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 + PP A + EI +S+ L + IL++ + V D Sbjct: 164 GLPAELILPPPSDAAKQRASRFVESEIDPEIPLSLVLGRPKILRLADTPTRIYVPDEDTI 223 Query: 78 DVVVH---SPRTMYLFGKNVGQANVILIGHD-----GKQMLNLDILIER------DIAHL 123 + S R + + G G ++L D G+ +++ + + + L Sbjct: 224 RTEIIDQESGRELAVTGVQPGTTTLMLWFKDSGAPSGQSVVSYLVRVYEDPILAKPVGDL 283 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-------------------- 163 E L +S + ++ ++D +++ G + + +++ Sbjct: 284 ETELNEKFPNSFVELDEIADRLIVRGQAPDAIEMSQILQILTGARGVRAGLTRPANPVTV 343 Query: 164 --SETFLSQSGRNQYANSSSKK-------------VMNLLNIAGEDQVTLKVTIAEVRRD 208 + F+ +++++ ++N + I GE QV LKVT+AEV R Sbjct: 344 AAAYDFVGAVDPLTSEEAAAERRRNLDPIALSQAGIINQMKIVGEQQVMLKVTVAEVNRS 403 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 + IG + + G + + ++ LD + AL R Sbjct: 404 AARSIGLNFGVDNDN-GLTVFQSLTGNLANTQNQSGANILASLDMGQVRLAIEALRRLNL 462 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSP 325 RTLAEP L A++GQ A F +GGQ +SS V+ +GV L FTP + Sbjct: 463 SRTLAEPNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQDR 522 Query: 326 GRIGLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 I L++ EVS + + R TTV+L SG TI +AGLL+ + Sbjct: 523 DVIRLQMNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQTN 582 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSV 436 + P +PI+GA +R + E E+ I TP LV PV + P Sbjct: 583 YGASSDRTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDVYE 642 Query: 437 EDDAKAFFFNRVNKIY 452 D + F NR+ Sbjct: 643 PSDIEFFIANRLESRR 658 >gi|238789148|ref|ZP_04632936.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC 33641] gi|238722680|gb|EEQ14332.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC 33641] Length = 415 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 111/441 (25%), Positives = 197/441 (44%), Gaps = 34/441 (7%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + + K + + + I+ ++ V VS AD + ++ ++ KN G A Sbjct: 1 MITAQGANAKPVYLSAGESYIINTQDEINTVFVSAAAIADYELIGKNSIIVYAKNEGVAE 60 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 L HD K + +L+ I + ++ +SNI + + + +L G+V + + Sbjct: 61 FTLFNHDHKAITKSVVLVNNIIPSVHRRIQAEYPESNIDINKIGSSYILTGLVESEEVRD 120 Query: 159 RAVELSETFLSQSGRNQY----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 V + + N N++ ++N + ++ +QV +K+TIAEV +D + IG Sbjct: 121 TVVNIIGEAIGSKRINNDRHPVGNTNHTNIINKIKLSQSNQVNVKLTIAEVTKDFTENIG 180 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S G S G + F + T++HA+ R LAE Sbjct: 181 INWSTIGESVGSFQLF-------------------KFNAKGISTLVHAINDNAIARVLAE 221 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ +SG+ ASF GG+ + + ++V+ ++G+ L+ V RI + + Sbjct: 222 PNLSVLSGEDASFLVGGEIPIVNTTQNG--SAVSYKEFGIKLNIGAKVNDKKRIRIILNE 279 Query: 335 EVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS PS R RKA TT+EL G + +L GL+ + ++ + IPL+ I Sbjct: 280 EVSSIGKTFNINGGDSYPSIRTRKAATTLELGDGESFILGGLISRNERESLKKIPLMGDI 339 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P+LGA FRN++ + +TE+ + AT LV PVA +++ PD + + FF N Sbjct: 340 PLLGAFFRNAQTEQSQTELVVIATVNLVNPVAEKEVELPD--FMQTSTLERFF----NFT 393 Query: 452 YGPKEASEVEGQNYKGAIGFI 472 + + E + + GFI Sbjct: 394 HIMEIKREKAARAFLRKGGFI 414 >gi|225872754|ref|YP_002754211.1| type II/III secretion system protein [Acidobacterium capsulatum ATCC 51196] gi|225792181|gb|ACO32271.1| type II/III secretion system protein [Acidobacterium capsulatum ATCC 51196] Length = 480 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 106/481 (22%), Positives = 187/481 (38%), Gaps = 32/481 (6%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVII 59 + M++ L + P P A + + + + + Sbjct: 7 TRRNLLHRAMTVALIAVLPLAGARPVNAAAAAETAQGPVDFVQLNNSNFMLHLLVGRSMF 66 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L ++ V VSDP + SP + + K G +++++ G+ + + D Sbjct: 67 LDTATPLKRVYVSDPAVLNSFTASPHQVLITAKAPGISSLVVWDESGRS-NVYTVSSDID 125 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 ++ L+ + I + D V L G V T ++ A +L++ + + Sbjct: 126 VSGLQAAINAAFPHDMIHASALQDRVTLTGEVATESEAAAAEKLAQGYAKTVENSIDLAP 185 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---------- 229 QV LKV AEV R +Q+GF G ++ + + Sbjct: 186 Q-----------RVQQVQLKVRFAEVDRTRAQQLGFNFISAGRNAAVTGTQQFPSFSNYT 234 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + ++ + + + ALE ++ LAEPT+T+ISG ASF S Sbjct: 235 LGGNSTANPITVSNPLDLLLYSSDLNLGATIQALENDQVLQILAEPTITSISGVEASFLS 294 Query: 290 GGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IG 342 GGQ + V T + +V YGV L FTP V G I L++ EVS + Sbjct: 295 GGQFPFPVVQGGTTGFTSVTVQFRPYGVKLDFTPYVNPDGTIRLKVAPEVSALDYTNEVQ 354 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++ +P+ R+A T V L +G + ++GLL + E +P +S+IPILG LFR+ + Sbjct: 355 ISGYSIPAIDTRRAKTEVVLKNGQSFAISGLLDHRLTNDYERMPGISRIPILGQLFRSYQ 414 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 T++ + TP +V P+ ++ + F R+ K K+ Sbjct: 415 KQASTTDLIVIVTPTIVDPLHEPTVAPKLPALAKPYLDNKLFDQRLKKHPRHKKQKGNPP 474 Query: 463 Q 463 Sbjct: 475 P 475 >gi|28900576|ref|NP_800231.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633] gi|153836379|ref|ZP_01989046.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810] gi|260877521|ref|ZP_05889876.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034] gi|260901740|ref|ZP_05910135.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037] gi|308095456|ref|ZP_05906034.2| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466] gi|308125917|ref|ZP_05777993.2| rough colony protein RcpA [Vibrio parahaemolyticus K5030] gi|28808956|dbj|BAC62064.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633] gi|149750281|gb|EDM61026.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810] gi|308087133|gb|EFO36828.1| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466] gi|308090527|gb|EFO40222.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034] gi|308108872|gb|EFO46412.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037] gi|308114419|gb|EFO51959.1| rough colony protein RcpA [Vibrio parahaemolyticus K5030] Length = 447 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 111/452 (24%), Positives = 189/452 (41%), Gaps = 38/452 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V + + G+ +S+ + V ++ V V+D AD V + + ++G G Sbjct: 13 VALLLPASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRG 72 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 ++I G ++ N ++++ + + L+ T+ D +I++ + + +V+ G+V + + Sbjct: 73 ATSIIAYDRAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEE 132 Query: 156 DSQRAVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTL 198 + L +S + + A + ++N L + DQ+ + Sbjct: 133 IKDKVYRHVGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINV 192 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 K+T+AEV L ++G + A G G + Sbjct: 193 KLTVAEVSSSFLTELGVSY-------------AETNGKSIGGAGQFVNKILDFTAEDIVA 239 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 V+ A + + LAEP L+ ISG+SASF GG+ SVT +YGV L Sbjct: 240 VISASGNDSIGQVLAEPNLSVISGESASFLVGGEIPITV--RDNDGISVTYKEYGVKLSM 297 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLL 374 V I L + EVS +PS R RKA TTV+L G + VLAGLL Sbjct: 298 VAKVTDSENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLL 357 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 + Q+ IP L IPILGALF + R +TE+ I AT LV PV D+ P + Sbjct: 358 TSEEQESLAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP--KF 415 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 D + ++K+ + + ++ + Sbjct: 416 ERTSDLERLLKLDLSKVDDEELENTIKAGGFN 447 >gi|299532592|ref|ZP_07045981.1| type II and III secretion system protein [Comamonas testosteroni S44] gi|298719395|gb|EFI60363.1| type II and III secretion system protein [Comamonas testosteroni S44] Length = 520 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 125/495 (25%), Positives = 208/495 (42%), Gaps = 50/495 (10%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 L + + + P + + I ++ L K +++ + Sbjct: 3 LASSVPVLAQSAGTPAQPGPVAAAAPAAPRTTLPARNCTAIHTEDPTTVTLGKSVVIPLN 62 Query: 64 VDVQDVLVS--DPTK-------------------ADVVVHSPRTMYLFGKNVGQANVILI 102 + +LVS P +V + SPR ++ G+ G NVIL Sbjct: 63 SPMARILVSGQTPGVGQAAANGQPQMQVQNGMGDIEVQLLSPRDLFFRGRKSGSMNVILQ 122 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G D+++ D L+ L + + IRV+ + +VL G + V Sbjct: 123 NAQGAC-FIKDVIVTMDPGPLQTKLSELMPEERGIRVQGADNALVLSGEISNPLRLDDVV 181 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 L+ + S SKK++NLL QV L+V IAEV + +L ++G S+ G Sbjct: 182 TLAGAY-----------SDSKKIVNLLRTTSPHQVMLEVKIAEVSKTLLDKLGA--SLAG 228 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + F+S GG + + S + + +R LAEP + AIS Sbjct: 229 QRITSNGMNTFSIASNFLSGGGGLLSAMRIGKGSIS--IDGQKDDGLVRILAEPNIMAIS 286 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GQ ASF SGG+ S+T V ++G+ + FTPTVL R+ L++ +EVS+ Sbjct: 287 GQQASFLSGGKIFIPVSQSNTNGVPVMTLEEKEFGIGVKFTPTVLGSSRVNLKLVSEVSD 346 Query: 339 PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + +PS VR+ADTTV+L G ++V+AGL+K++I + + P L + Sbjct: 347 LSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDGQSLVIAGLIKNNITEAVKRFPGLGE 406 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IP+LGAL R++ F ++TE+ TP LV+ +A P D++ A+ + + Sbjct: 407 IPVLGALARSTEFQTDQTELMFIITPRLVQALA-EAPRVPTDNHVPPSRAEVYLNGALES 465 Query: 451 IYGPKEASEVEGQNY 465 V Sbjct: 466 SKPASAVKTVPAATM 480 >gi|317491683|ref|ZP_07950118.1| type II and III secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920117|gb|EFV41441.1| type II and III secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 467 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 99/424 (23%), Positives = 193/424 (45%), Gaps = 42/424 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + + ++QV ++ + +S P AD + R + ++ K+ G+ ++I + Sbjct: 38 RAQELYMDAGESQVIQVNGNIDTIFISAPKVADYEIIGERGVMVYAKSEGKTDLIAFDKN 97 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G Q++ ++++ ++ L+ + + DS I ++ + T +L G V T +D R ++ Sbjct: 98 GDQLVKTTLVVDPILSSLQKKVSSLVPDSQITLQKMGKTYILSGSVATEEDRDRVYQIVG 157 Query: 166 TFLSQSGRNQYANSSS---------------------KKVMNLLNIAGEDQVTLKVTIAE 204 + + ++ ++V+N L + +QV +K+++ E Sbjct: 158 EGVGATRTTNKKEVANTNGGSGGNGENSNSWLDEVVYQEVINQLKLPMTNQVNVKLSVVE 217 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V + +G G + + + +++HA+ Sbjct: 218 VTKTFSDNVGIDWG--------------TISGSGGNITPGTFRFVKFNADTLSSLVHAIS 263 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + R LAEP L+ +SG+SA F GG+ V+SS ++V D+G+ L+ V S Sbjct: 264 NDSVARVLAEPNLSVLSGESAEFLVGGEVPV--VTSSANGSNVQYKDFGIKLNVGAKVSS 321 Query: 325 PGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI + + EVS P+++ R+A TTVEL G + +L GL+ ++ ++ Sbjct: 322 NKRIRVTLGEEVSNVDSTYSTNAGDSFPAFQTRRAKTTVELADGESFLLGGLISNNEREE 381 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P + +PILGALFRN++ R E+ + AT LVKPV MRD+ PD + Sbjct: 382 LSRLPFIGDVPILGALFRNAKTERSRGELVVVATVNLVKPVTMRDIVMPD--FQRTSTLS 439 Query: 442 AFFF 445 F Sbjct: 440 RFLN 443 >gi|149188863|ref|ZP_01867153.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1] gi|148837283|gb|EDL54230.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1] Length = 456 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 113/448 (25%), Positives = 197/448 (43%), Gaps = 52/448 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN +Q+ + + V +S+P AD + + T+ +F VGQ+ +I+ G + +L Sbjct: 34 SITLNDGQHIQLKMPIGKVFISNPAIADYKIINDNTLVVFANGVGQSRLIVYGTNNDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ D++ + L+ D+ ++V+ V + V + G+V + Q L T L + Sbjct: 94 SDRIIVDLDLSEVRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEQTRDDIYRLVATLLGR 153 Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ + + ++ + +A QV +K+++A+V Sbjct: 154 EKIKKWDKTEKLEFKSEHMERKEPESMVFARNMTWEGILERIEVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 K +G S GSS G V D + T++ AL Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP LT +SG+SASF GG+ +S+ ++T ++G+ L T VLS Sbjct: 255 SIAEVLAEPNLTVLSGESASFLVGGEVPVIVSTSNN--VNITFKEFGIKLDLTAKVLSQD 312 Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I +++ EVSE + +P R+A TTVEL G + +L GL+ + + Sbjct: 313 KIRMQLSPEVSEVESYVEAAGVKVPQLASRRAMTTVELADGDSFILGGLMSSSDLEKMQK 372 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP + +P+LGA FR + R+ TE+ I AT LV+P+ +D+ P + + Sbjct: 373 IPFIGDVPVLGAAFRKATTQRKRTELIIVATVNLVEPMKPKDIQLP--YIKKTSTLSRWL 430 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472 G AS GFI Sbjct: 431 N---VDADGKPVASSDATIRLLSQGGFI 455 >gi|52425834|ref|YP_088971.1| GspD protein [Mannheimia succiniciproducens MBEL55E] gi|52307886|gb|AAU38386.1| GspD protein [Mannheimia succiniciproducens MBEL55E] Length = 458 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 89/423 (21%), Positives = 173/423 (40%), Gaps = 30/423 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 K + + +++ + + VS AD + + ++GK G +V +G Sbjct: 18 AKPMYLEQGTSKYIELDKKIDTIFVSSSEVADYEIVDDYSFMVYGKQEGTTDVTAFDANG 77 Query: 107 KQMLNLDILIERDIAHL---EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + + I ++ ++ +SN++V+ + V+ G T +S+ + Sbjct: 78 NILYTDTLNVNALINNIVDTNKQIKARFPNSNLQVKKLGKAYVIEGKANTQHESEEVNRI 137 Query: 164 SETFLSQSGRNQYANSSSKK-----------------VMNLLNIAGEDQVTLKVTIAEVR 206 + + + V+N NI Q+ +K+T+AEV Sbjct: 138 VGEAIGVAPKVTETTLKRGNGMSDEKIPFLDKYEYNGVINNTNIDKTKQINVKLTVAEVN 197 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADF-GGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 ++ +G + S + + A+ G F G ++ ++ + A+ Sbjct: 198 KNFSDSLGIKWEHLSGSVLENWTSGANGYSGGFDGTTGSIAL---INANRLSAFITAVNN 254 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 A + LAEP ++ +SG++A GG+ + S G TS+ D+GV L V Sbjct: 255 ANNGKILAEPNISMLSGETADILVGGEVPFAQ-RDSDGNTSIIYKDFGVKLMVGAKVQKN 313 Query: 326 GRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 ++ + + EVS + GD+P ++ R+A +T E+ +G + ++ GLL + Sbjct: 314 DQVRIVLAQEVSTLAGNYTYTSVGDIPYFQTRRAKSTFEVGNGESFIIGGLLSSSDLEGV 373 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +PL IPILGA FR+ +RE E+ + AT LV P + P + + Sbjct: 374 SKVPLFGDIPILGAFFRSVTTSRETKELVVVATVNLVTPNDAEKVIYP--SFEQTGTLER 431 Query: 443 FFF 445 FF Sbjct: 432 FFN 434 >gi|37676253|ref|NP_936649.1| rough colony protein RcpA [Vibrio vulnificus YJ016] gi|326424174|ref|NP_762071.2| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus CMCP6] gi|37200794|dbj|BAC96619.1| rough colony protein RcpA [Vibrio vulnificus YJ016] gi|319999557|gb|AAO07061.2| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus CMCP6] Length = 441 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 108/453 (23%), Positives = 189/453 (41%), Gaps = 43/453 (9%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 I + + + + +++ + + + V V P AD + + ++G + Sbjct: 11 TTIGVVSLSVNSNELMNLNQGSAKTISLKRQISTVFVGAPEIADYKIIDETKVVVYGVGL 70 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G +VI+ G ++ N ++++ + + ++ TL D +I + V + VVL G+V + Sbjct: 71 GATSVIVYDRAGNELYNAEVVVNKSLRLVKQTLIARFPDESINITNVGEQVVLDGVVSSE 130 Query: 155 QDSQRAVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVT 197 + + L +S + A ++N L + +Q+ Sbjct: 131 EVKTQIYRTVGEMLKKSVTRNTLTLQDTSGGQVDSLDYTATYIYDNIINNLKVLTTEQIN 190 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 +K+T+AEV L ++G +S +G G + Sbjct: 191 VKLTVAEVSSSFLSELGVSYSDSGQ------------------AGRFVNKLLDFTAQDIV 232 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 V+ A R LAEP L+ ISG++ASF GG+ S SV+ +YGV L Sbjct: 233 AVITASGDDQIGRVLAEPNLSVISGETASFLVGGELPIAIRDESG--ISVSYKEYGVKLS 290 Query: 318 FTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V I L + EVS ++P+ R RKA TTV+L G + VLAGL Sbjct: 291 MVAKVTDSENIRLSLLPEVSSIDEENKTANGLINVPALRTRKAQTTVQLKDGQSFVLAGL 350 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L + ++ IP+L IPILGALF +++ N+ +TE+ I AT LV PV D+ P Sbjct: 351 LTSEERESLSKIPVLGDIPILGALFSHTKSNQTKTELIIVATVNLVDPVKAEDIKLP--S 408 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + D + ++ + P+ + + Sbjct: 409 FRRTSDIERLLRIDLSSMNEPELEDTLNKGGFN 441 >gi|152981036|ref|YP_001355006.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille] gi|151281113|gb|ABR89523.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille] Length = 429 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 100/424 (23%), Positives = 182/424 (42%), Gaps = 36/424 (8%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKN 93 S + + +++ + + + L+ P D++ + V+DP AD+++ P ++ L GK Sbjct: 14 TSFPALAEEMNLTVRVREQLQLKTPADLERIAVADPEVADILIIKGSNKRPGSIMLVGKK 73 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G +V +G + ++ L+ + + +++ SD+ L G + Sbjct: 74 PGSTSVTAWQRNG-PTKVWQV-------SVQSALQGLLPEEGAELQINSDSASLRGQSPS 125 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + V + + +K ++ +A V + V I E R++LK+ Sbjct: 126 LLSHANTVAAGTQAVGK-----------EKFLDTSTVATSGMVQIDVQIVEFSRNVLKEA 174 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSE--GGDFSVKGVLDRFSFETVLHALERATAIRT 271 GF + +F S +L S + +E+ R Sbjct: 175 GFDFIFNQNRGATFSFGLNNFSTILSSTVQTPVSQAFNLLGSTSVNARVKLIEQNGLARV 234 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P+L A+SGQSASF +GG+ G T++ +G+ L TPTVLS RI L+ Sbjct: 235 LARPSLIALSGQSASFLAGGELPVPQS-GGLGTTTIIYKAFGIGLTVTPTVLSANRIALK 293 Query: 332 IQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + E S+ +P+ R+ +TT+EL G + V+ GL+ + +P Sbjct: 294 VAPEASDLDYANAIVTNNMMIPAISTRRTETTLELGDGESFVIGGLVSRTTKSNVNKVPF 353 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDD----HYSVEDDAKA 442 L +PILG FR+ +++++E E+ I ATP LVKP+A L P D + + + Sbjct: 354 LGDLPILGPFFRSMQYSQDEKELVIIATPHLVKPIAKGAQLPLPGDDKERRDTPANAWSS 413 Query: 443 FFFN 446 + Sbjct: 414 YVMG 417 >gi|32477871|ref|NP_870865.1| type II secretion system protein [Rhodopirellula baltica SH 1] gi|32448428|emb|CAD77943.1| probable type II secretion system protein [Rhodopirellula baltica SH 1] Length = 704 Score = 252 bits (644), Expect = 8e-65, Method: Composition-based stats. Identities = 110/496 (22%), Positives = 186/496 (37%), Gaps = 62/496 (12%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 + PP A + EI +S+ L + IL++ + V D Sbjct: 110 GLPAELILPPPSDAAKQRASRFVESEIDPEIPLSLVLGRPKILRLADTPTRIYVPDEDTI 169 Query: 78 DVVVH---SPRTMYLFGKNVGQANVILIGHD-----GKQMLNLDILIER------DIAHL 123 + S R + + G G ++L D G+ +++ + + + L Sbjct: 170 RTEIIDQESGRELAVTGVQPGTTTLMLWFKDSGAPSGQSVVSYLVRVYEDPILAKPVGDL 229 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-------------------- 163 E L +S + ++ ++D +++ G + + +++ Sbjct: 230 ETELNEKFPNSFVELDEIADRLIVRGQAPDAIEMSQILQILTGARGVRAGLTRPANPVTV 289 Query: 164 --SETFLSQSGRNQYANSSSKK-------------VMNLLNIAGEDQVTLKVTIAEVRRD 208 + F+ +++++ ++N + I GE QV LKVT+AEV R Sbjct: 290 AAAYDFVGAVDPLTSEEAAAERRRNLDPIALSQAGIINQMKIVGEQQVMLKVTVAEVNRS 349 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 + IG + + S+ G ++ LD + AL R Sbjct: 350 AARSIGLNFGVDNDNGLTVFQSLTGNLASTQSQSGA-NILASLDMGQVRLAIEALRRLNL 408 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSP 325 RTLAEP L A++GQ A F +GGQ +SS V+ +GV L FTP + Sbjct: 409 SRTLAEPNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQDR 468 Query: 326 GRIGLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 I L++ EVS + + R TTV+L SG TI +AGLL+ + Sbjct: 469 DVIRLQMNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQTN 528 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSV 436 + P +PI+GA +R + E E+ I TP LV PV + P Sbjct: 529 YGASSDRTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDVYE 588 Query: 437 EDDAKAFFFNRVNKIY 452 D + F NR+ Sbjct: 589 PSDIEFFIANRLESRR 604 >gi|10956078|ref|NP_052165.1| exporter protein [Chlorobium limicola] gi|1688247|gb|AAB36938.1| exporter protein [Chlorobium limicola] Length = 461 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 93/461 (20%), Positives = 166/461 (36%), Gaps = 68/461 (14%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 + L + I + ++ V V DP AD ++ + +YL GK +G N+++ G + Sbjct: 8 RVPLGESRIYRFAQPIKRVAVGDPQVADYIMMNRSEIYLLGKKLGSTNLVVWDQKGN-VT 66 Query: 111 NLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + + + R L+ L+ N I ++ + +VL G V ++ + L + Sbjct: 67 STPVQVSRGTTALQAFLKALFPKENDIHIDALGPALVLSGSVSDALVAESVIRLVTAYFG 126 Query: 170 Q---------------------------------------------------SGRNQYAN 178 Sbjct: 127 GSVSKSSPESALIGTDAKALTGVIGELNKSTTASNAESFAFFKKTLMMGDEKGASGSAGR 186 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S++ V+NLL + QV L+V IA+V R L+ +G + GK Sbjct: 187 DSTRGVINLLKVRDPQQVRLEVRIAQVSRSYLESLGLSVTKL-------TGDLTGSLGKL 239 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + +L + ++ + A + + ++ LAEPT+ +SG+ F GG+ + Sbjct: 240 STGFVSDATLDLLLKPDYDIKMGAKRKPSLLKILAEPTIVTMSGKEGYFLVGGKIYTPSR 299 Query: 299 SSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 S T + V P+ R+ + + R Sbjct: 300 VESQLDTAKLNTKNTPTAWVYVLRPSCWMQAVFHSRLYPRFLNLTRNHSLLGLQKIGHRL 359 Query: 356 ----ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T VE+ G +V+ GL D++ + +PLL +IPILGALFRN+ N E+TE+ Sbjct: 360 NSAPVSTAVEMNEGENLVIGGLKLDNLTNAIDSVPLLGEIPILGALFRNTDKNAEKTELM 419 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 + P LVK P D + + FF ++ Sbjct: 420 VIVRPTLVKASNTPP-ELPTDKFVPPTRGELFFGGKLEGSR 459 >gi|319940440|ref|ZP_08014785.1| type II and III secretion system protein [Sutterella wadsworthensis 3_1_45B] gi|319806066|gb|EFW02815.1| type II and III secretion system protein [Sutterella wadsworthensis 3_1_45B] Length = 530 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 121/498 (24%), Positives = 205/498 (41%), Gaps = 65/498 (13%) Query: 2 RYLQRTFFTMMSI-FLFSSN--PSVAKLPPIKEANAAVINISDVE-----IGKGKKISIG 53 R RT F + L P+ A L + V+ + + + Sbjct: 20 RKPSRTVFAAACLGALLGLAVSPASAALKAQVPTDVKVLEGASSLKNLKLAKPTSSLRVF 79 Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 L + +LQ+P VLV+ P A + SP ++ FG G + G + + Sbjct: 80 LKEGALLQLPSAAAKVLVATPGIASYQMPSPDQVFFFGTAAGSTTFYALDEAGAVIAAVQ 139 Query: 114 ILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 + +E ++ L+ ++R + ++I V +++ +++ G V+T DS+R +L E++L S Sbjct: 140 VTVEHNLEKLKADIKRAVPSASIELVPALNNRMIVRGKVKTALDSRRVTQLVESYLVSSA 199 Query: 173 RNQYANSSSK------------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 S+ V+N L + QV ++V + EV R + +G Sbjct: 200 AAGGPGQGSQQGGQDGGGQGGSAGGQSSPVINQLKVEVSQQVNIQVRVVEVSRSLTHSLG 259 Query: 215 FQHSI-------------------------------TGSSSGPSKSFAADFGGKFVSEGG 243 F S + + G Sbjct: 260 FNWGAVLNTGRGPLFLGNGTSQGLFSTHAANNSHFNPNDSFADGNANIPGLMPDSNTAGA 319 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + R S +++A+ + LAEP LTA+SGQ A+F SGG+ + + Sbjct: 320 ALGGIFNMGRMSLGVLINAMSESGFASLLAEPNLTAMSGQPAAFASGGEVPIVII--TGN 377 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADT 358 + ++ +GV+L TPTVLSP RI + + EVSE +P+ RVR+A+T Sbjct: 378 SITIDYKSWGVILRMTPTVLSPNRIAIHVAPEVSELTSEGQVILSEGSVIPAVRVRRAET 437 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TVEL SG + LAG+L+ + Q G+P L +P +G LF + E++E+ I T + Sbjct: 438 TVELASGQSFALAGMLRSESSQTVNGVPGLRNLPFVGRLFEYEQTQVEDSELVILLTANI 497 Query: 419 VKPVAMRDLSRPDDHYSV 436 V PV+ DL P + Sbjct: 498 VDPVSSGDLRVPGRGINA 515 >gi|260914312|ref|ZP_05920781.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella dagmatis ATCC 43325] gi|260631413|gb|EEX49595.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella dagmatis ATCC 43325] Length = 465 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 87/429 (20%), Positives = 171/429 (39%), Gaps = 29/429 (6%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 I + + K ++ ++Q + + VS P AD + + ++ K G Sbjct: 19 AILVLSPGVMFAKTFNLEQGGTQLIQTKEKIDTIFVSSPAIADYEILDDNSFIIYAKEQG 78 Query: 96 QANVILIGHDGKQMLNLDILIE---RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 +A + +GK + N + ++ I+ ++ ++N+ V+ V V+ G R Sbjct: 79 RAEISAFDANGKTLTNDVVNVDSLFTGISDTNQQIKARFPNTNLSVKKVGKAYVIEGKAR 138 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVT 197 + ++S + L + + V+N +N+ Q+ Sbjct: 139 SQEESDEVHRIVGEALGNGKKVTETKFKAGESEESLPFLDKYQFDGVVNNVNVDETTQIN 198 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 +K+T+ EV + + + +G S G V+ +D Sbjct: 199 VKLTVVEVNKKLSEAVGINWS-----RLSGGVPDLLGGVSRVTGFDGIQGLLKIDASGVS 253 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 ++AL+ R LAEP ++ +SG++A GG+ + T + D+G+ L Sbjct: 254 AFINALDNQNNGRILAEPNISMLSGETADILVGGEIPFAQRDKEGAPTII-YKDFGIRLA 312 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 + RI L + VS + G++P + R++ + E+ G + ++ GL Sbjct: 313 VAAKLQKNNRIRLALDQRVSTIAGNYSFESVGEIPFFNTRRSKSVFEVADGESFIIGGLF 372 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 + +P+L IPILGA FRN++ +RE+ E+ I AT VKPV ++ P + Sbjct: 373 NSSDLEGINKVPVLGDIPILGAFFRNAKTDREDRELVIVATVNTVKPVQEDEIVYPT--F 430 Query: 435 SVEDDAKAF 443 + F Sbjct: 431 ERTGTMERF 439 >gi|59711120|ref|YP_203896.1| general secretion pathway protein D [Vibrio fischeri ES114] gi|59479221|gb|AAW85008.1| general secretion pathway protein D [Vibrio fischeri ES114] Length = 436 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 108/409 (26%), Positives = 181/409 (44%), Gaps = 33/409 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 +++I + + + ++ + ++ V +S+P AD + + LFG+ VG Sbjct: 12 LLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYKVVLFGREVG 71 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 + I G+++LN I++ ++ + +E ++ S+I + + V+ G V + Sbjct: 72 DSVFIAFDVQGRELLNKKIIVSKNYSGIEQQVKLRFPTSDIDIFAIGTNAVVSGTVLNEE 131 Query: 156 DSQRAVELSETFLSQSGRNQYANSSS-----------KKVMNLLNIAGEDQVTLKVTIAE 204 D + E+ T L + A + V+N + +A QV +K+TIAE Sbjct: 132 DRDQIYEMVATLLFDDNADNNAQDDRTELTYMDKLNFEGVVNQIEVARTKQVNVKLTIAE 191 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V ++ G + G G +V+ A+ Sbjct: 192 VSHSFMQDFGIKVGSNGQ------------------AGIFVDQLVHFSASDIVSVITAVG 233 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + LAEP L+ ISG+ ASF GG+ TV GAT+V ++GV L T V Sbjct: 234 TDSVGQVLAEPNLSVISGEDASFLVGGELPVVTVI--DGATNVQYKEFGVKLDLTAKVER 291 Query: 325 PGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 +I L + VS + ++PS + R A TTVEL G + VL GLL + ++ Sbjct: 292 DDKIKLALAPSVSSLDTQYANDNYNLPSLKTRSARTTVELGDGQSFVLGGLLNSEEKESL 351 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 IP + IPILGALFR++ R +TE+ I AT LV+PV + P Sbjct: 352 TRIPFVGDIPILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPT 400 >gi|261867455|ref|YP_003255377.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412787|gb|ACX82158.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 420 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 91/404 (22%), Positives = 174/404 (43%), Gaps = 25/404 (6%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++Q + + VS P AD + T ++ K G+ V G DG+ + + + ++ Sbjct: 1 MVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 60 Query: 119 DIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + + L+ ++N+ V+ V V+ G R+ ++S + L + Sbjct: 61 VVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKVT 120 Query: 176 YANSSSK-----------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 V++ NIA Q+ +K+++ EV + + + +G S S Sbjct: 121 ETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHVAGSG 180 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 GG ++G LD ++AL+ + + LAEP ++ +SG++ Sbjct: 181 PLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFINALDNQSNGKVLAEPNISMLSGET 235 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A GG+ + G+ ++ ++G+ L + RI L + VS N Sbjct: 236 ADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNYN 294 Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G++P + RKA + E+ +G + ++ GL + + +PLL IPILG+ FR++ Sbjct: 295 FDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRSA 354 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 R++ E+ I AT +VKPV +D+ PD + + FF Sbjct: 355 TTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKTGTMERFFH 396 >gi|197335194|ref|YP_002155269.1| general secretion pathway protein D [Vibrio fischeri MJ11] gi|197316684|gb|ACH66131.1| general secretion pathway protein D [Vibrio fischeri MJ11] Length = 436 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 109/409 (26%), Positives = 181/409 (44%), Gaps = 33/409 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 +++I + + + ++ + ++ V +S+P AD + + LFG+ VG Sbjct: 12 LLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYKVVLFGREVG 71 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 + I G+++LN I++ R+ + +E ++ S+I + + V+ G V + Sbjct: 72 DSVFIAFDVQGRELLNKKIIVSRNYSGIEQQVKLRFPTSDIDIFAIGTNAVVSGTVLNEE 131 Query: 156 DSQRAVELSETFLSQSGRNQYANSSS-----------KKVMNLLNIAGEDQVTLKVTIAE 204 D + E+ T L + A + V+N + +A QV +K+TIAE Sbjct: 132 DRDQIYEMVATLLFDDNADNNAQDDRTELTYMDKLNFEGVVNQIEVARTKQVNVKLTIAE 191 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V ++ G + G G +V+ A+ Sbjct: 192 VSHSFMQDFGIKVGSNGQ------------------AGIFVDQLVHFSASDIVSVITAVG 233 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + LAEP L+ ISG+ ASF GG+ TV GAT+V ++GV L T V Sbjct: 234 TDSVGQVLAEPNLSVISGEDASFLVGGELPVVTVI--DGATNVQYKEFGVKLDLTAKVER 291 Query: 325 PGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 +I L + VS + ++PS + R A TTVEL G + VL GLL + ++ Sbjct: 292 DDKIKLALAPSVSSLDTQYANDNYNLPSLKTRSARTTVELGDGQSFVLGGLLNSEEKESL 351 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 IP + IPILGALFR++ R +TE+ I AT LV+PV + P Sbjct: 352 TRIPFVGDIPILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPT 400 >gi|221067360|ref|ZP_03543465.1| type II and III secretion system protein [Comamonas testosteroni KF-1] gi|220712383|gb|EED67751.1| type II and III secretion system protein [Comamonas testosteroni KF-1] Length = 520 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 126/492 (25%), Positives = 209/492 (42%), Gaps = 64/492 (13%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI--------------SIGLNKVII 59 + L SS P +A+ + + ++ L K ++ Sbjct: 1 MLLASSAPVLAQSAGTAAQPGPAAAAAPAPAAPRTTLPARNCTAIHTEDPTTVTLGKSVV 60 Query: 60 LQVPVDVQDVLV-------------SDPTK--------ADVVVHSPRTMYLFGKNVGQAN 98 + + + +LV P +V + SPR ++ G+ G N Sbjct: 61 IPLNSPMARILVSGQTPGAGQAAANGQPQMQVQNGMGDIEVQLLSPRDLFFRGRKSGSMN 120 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDS 157 VIL G D+++ D L+ L + + IRV+ + +VL G + Sbjct: 121 VILQNAQGAC-FIKDVIVTMDPGPLQAKLSELMPEERSIRVQGADNALVLSGEISNPLRL 179 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 V L+ + S SKK++NLL QV L+V IAE+ + +L ++G Sbjct: 180 DDVVTLAGAY-----------SDSKKIVNLLRTTSPHQVMLEVKIAEISKTLLDKLGSSL 228 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 S G + + F+S GG L R S + + +R LAEP + Sbjct: 229 S--GQRVTSNGQNSYTVLSNFLSGGGGLLNAMRLGRGSIS--IDGQKDDGLVRILAEPNI 284 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334 AISGQ ASF SGG+ ++T V ++G+ + FTPTVL R+ L++ + Sbjct: 285 MAISGQQASFLSGGKIFIPVAQTNTNGVPVMTLEEKEFGIGVKFTPTVLGNSRVNLKLVS 344 Query: 335 EVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 EVS+ + +PS VR+ADTTV+L G ++V+AGL+K++I + + P Sbjct: 345 EVSDLSQTGSPFTSINGVTSVIPSLTVRRADTTVQLNDGQSLVIAGLIKNNITEAIKRFP 404 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 L +IP+LGAL R++ F ++TE+ TP LV+ +A P D++ V A+ + Sbjct: 405 GLGEIPVLGALARSTEFQTDQTELMFVITPRLVQALA-EAPRVPTDNHVVPSRAEVYLNG 463 Query: 447 RVNKIYGPKEAS 458 + Sbjct: 464 ALESSKPAPAEK 475 >gi|170724970|ref|YP_001758996.1| type II and III secretion system protein [Shewanella woodyi ATCC 51908] gi|169810317|gb|ACA84901.1| type II and III secretion system protein [Shewanella woodyi ATCC 51908] Length = 446 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 100/417 (23%), Positives = 189/417 (45%), Gaps = 46/417 (11%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + LN +++ ++ V +S P AD + + ++G+ +GQA + + + +L+ Sbjct: 29 VTLNDASSIELKQEIGTVFISQPEVADYKITGNNKLVIYGRQLGQARLFVYNKANEVILS 88 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 + ++ +++ + L+ F D ++ + V D V + G+V + + TFL + Sbjct: 89 QLLHVDINLSQIRRQLKLFYPDLDLTLTSVGDKVAVRGIVYSEEQRNDIYRQVATFLGRE 148 Query: 172 GRNQYANSSS---------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 ++ S + ++ L ++ QV +K+++A+V ++ Sbjct: 149 KVERFDESELVEFKDSFTEANWLAYERNFIWQGIIEGLRLSQTQQVNVKISVAQVTKEFN 208 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 + +G S G S G T+++AL + + Sbjct: 209 ETLGVSWSTVGRSVGEFSFLD-------------------FKASDLSTIINALGKDSIAE 249 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP L+ +SG+SASF GG+ + S+ T++T ++G+ L + VL+ +I L Sbjct: 250 VLAEPNLSVMSGESASFLVGGEIPV--IFSNNNTTNITYKEFGIRLDLSAKVLNNEKIKL 307 Query: 331 RIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 ++ EVS E + +P R+A TT+EL G + +L GL+ D + IPLL Sbjct: 308 QMMPEVSAVEGFVEAAGIKIPQLTTRRAMTTIELGDGDSFLLGGLMSSDELENVSKIPLL 367 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 IP+ GALFR + R++TE+ I AT LVKP++ ++ P + FF Sbjct: 368 GDIPVFGALFRQAGTTRKKTELVIVATVNLVKPLSPTEVRLP--KMTPTKSLARFFN 422 >gi|255658704|ref|ZP_05404113.1| putative type II/III secretion system protein [Mitsuokella multacida DSM 20544] gi|260849091|gb|EEX69098.1| putative type II/III secretion system protein [Mitsuokella multacida DSM 20544] Length = 548 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 95/443 (21%), Positives = 177/443 (39%), Gaps = 57/443 (12%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 + +SI LN+ L ++ V +++P ADV + ++ + G + G + Sbjct: 22 APAYAQFTPLSIDLNQSYYLNTGRNITRVAIANPKIADVSLLDGTSLNVIGISPGTTTLN 81 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + +G I + + L ++ I ++RV+M+ ++L G V+ + A Sbjct: 82 VWASNG-YRYEYRITVSDQDSGLAKIVQDAIGLPDVRVQMIGGKILLRGTVKNQYERNLA 140 Query: 161 VELSETFLSQSGRNQ---------------------------------------YANSSS 181 +++ + S + + S+ Sbjct: 141 YTIAKLYAKGSNSSPSQDQGQYVSTTESKSSMTPDGRYENKTVTNDSYQRTPRDTSGSTG 200 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 V+NLL + DQ+ ++ E+ K +G ++ S S + G + + Sbjct: 201 DSVVNLLEMTNPDQINIEAMFVELGTSDAKNLGINYASQDMSDTDSSGIKMNDVGTYYAG 260 Query: 242 GGDFSVKGVLD-----------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + + +HAL R ++ P +T +SG++AS G Sbjct: 261 ESYGRQRSGGNHWYNSNWLFTHFSKINAEIHALIENGKARVISRPNVTTMSGKNASILIG 320 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVS----EPVIGVNA 345 G+ Y+ + G+T+ + YG+ + PTV G I ++T+VS + + Sbjct: 321 GEVPYQES-NGFGSTTTSYKTYGIGIQLWKPTVDQDGNITTELETQVSRLDWNNAVTKDG 379 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 MP R A TTV +PSG T+V+ GLL + + +PLL IPILG LF+ +R Sbjct: 380 YRMPGIATRSAYTTVNIPSGMTMVIGGLLNSNDANTIQKVPLLGNIPILGELFKYHNKSR 439 Query: 406 EETEIFIAATPFLVKPVAMRDLS 428 ++TEI + TP +V +S Sbjct: 440 QKTEIVVLITPRVVSEETPARMS 462 >gi|165975974|ref|YP_001651567.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876075|gb|ABY69123.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 462 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 93/422 (22%), Positives = 171/422 (40%), Gaps = 27/422 (6%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 K ++ + +++ + + VS AD + + L+ K G++ VI Sbjct: 24 SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFD 83 Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 +G + +IA ++ +SN+ V+ V VL G + +S Sbjct: 84 ANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEI 143 Query: 161 VELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVTLKVTIAEV 205 + L + + V+N N Q+ +K+T+AEV Sbjct: 144 NRIVGESLGAGKKVIETKLKHNNSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEV 203 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + +IG S + + A G F GG ++ ++ + ++ AL+ Sbjct: 204 NKTFSDEIGINWSNLSGNFFRNLG-NAGIQGNFNKNGGQLAL---VNSNNLNVLISALDN 259 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + LAEP ++ +SG++A GG+ + G SV ++G+ L V Sbjct: 260 QNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKS 318 Query: 326 GRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 RI L + VS + +P + R++ +T E+ +G + +++GLL + + Sbjct: 319 DRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIK 378 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + F Sbjct: 379 KVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERF 436 Query: 444 FF 445 F Sbjct: 437 FN 438 >gi|54309660|ref|YP_130680.1| Flp pilus assembly protein [Photobacterium profundum SS9] gi|46914098|emb|CAG20878.1| hypothetical Flp pilus assembly protein [Photobacterium profundum SS9] Length = 461 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 112/403 (27%), Positives = 181/403 (44%), Gaps = 45/403 (11%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 I LN L+ P ++ V VS P D V R + +F +GQA VI+ G + + +L+ Sbjct: 34 ITLNDANNLEFPQEIGTVFVSQPDILDYKVIDNRKLVIFSNKIGQAKVIVYGKENQVLLS 93 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 ++ +++ + L+ + D NI V V + V + G V + + T L + Sbjct: 94 QRYHVDINLSQVRRQLKLYYPDLNISVSSVGEQVAVRGTVNNEKQRDDIYRMVATLLGKK 153 Query: 172 GRNQYANSSS----------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 +Y + + ++ L IA QV +K+++A+V ++ Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYIWEGIVEGLVIAQAQQVNVKISVAQVTKEF 213 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + IG S G S G TV++A+ Sbjct: 214 NETIGVDWSTVGRSVGEFSFL-------------------KFKANDLSTVINAIGNDNIA 254 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LAEP LT +SG+SASF GG+ + +T+++ ++G+ L + VLS I Sbjct: 255 EILAEPNLTVLSGESASFLVGGEVPVIVT--NDNSTNISFKEFGIKLELSAKVLSNKSIK 312 Query: 330 LRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L++ EVS E + ++P R+A TT++L G + +L GL+ D + IPL Sbjct: 313 LQLAPEVSAVEGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISKIPL 372 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 L IPILGA FR S R++TE+ I AT LVKPV+ D+ P Sbjct: 373 LGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415 >gi|46143341|ref|ZP_00204447.1| COG4964: Flp pilus assembly protein, secretin CpaC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208037|ref|YP_001053262.1| rough colony protein A [Actinobacillus pleuropneumoniae L20] gi|126096829|gb|ABN73657.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 462 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 92/422 (21%), Positives = 170/422 (40%), Gaps = 27/422 (6%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 K ++ + +++ + + VS AD + + L+ K G++ VI Sbjct: 24 SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFD 83 Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 +G + +IA ++ +SN+ V+ V VL G + +S Sbjct: 84 ANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEI 143 Query: 161 VELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVTLKVTIAEV 205 + L + + V+N N Q+ +K+T+AEV Sbjct: 144 NRIVGESLGAGKKVIETKLKHNDSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEV 203 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + +IG S + + AA G + G +++ + ++ AL+ Sbjct: 204 NKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGGQ----LALVNSNNLNVLISALDN 259 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + LAEP ++ +SG++A GG+ + G SV ++G+ L V Sbjct: 260 QNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKS 318 Query: 326 GRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 RI L + VS + +P + R++ +T E+ +G + +++GLL + + Sbjct: 319 DRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIK 378 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + F Sbjct: 379 KVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERF 436 Query: 444 FF 445 F Sbjct: 437 FN 438 >gi|307245412|ref|ZP_07527500.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254367|ref|ZP_07536205.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258825|ref|ZP_07540557.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261005|ref|ZP_07542687.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306853753|gb|EFM85970.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862666|gb|EFM94622.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867176|gb|EFM99032.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869307|gb|EFN01102.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 462 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 92/422 (21%), Positives = 170/422 (40%), Gaps = 27/422 (6%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 K ++ + +++ + + VS AD + + L+ K G++ VI Sbjct: 24 SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFD 83 Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 +G + +IA ++ +SN+ V+ V VL G + +S Sbjct: 84 ANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEI 143 Query: 161 VELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVTLKVTIAEV 205 + L + + V+N N Q+ +K+T+AEV Sbjct: 144 NRIVGESLGAGKKVIETKLKHNDGEENVPFLDKYQYEGVINNANEENATQINVKLTVAEV 203 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + +IG S + + AA G + G +++ + ++ AL+ Sbjct: 204 NKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGGQ----LALVNSNNLNVLISALDN 259 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + LAEP ++ +SG++A GG+ + G SV ++G+ L V Sbjct: 260 QNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKS 318 Query: 326 GRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 RI L + VS + +P + R++ +T E+ +G + +++GLL + + Sbjct: 319 DRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIK 378 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + F Sbjct: 379 KVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERF 436 Query: 444 FF 445 F Sbjct: 437 FN 438 >gi|190149865|ref|YP_001968390.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307249759|ref|ZP_07531737.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307256574|ref|ZP_07538355.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307263189|ref|ZP_07544810.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914996|gb|ACE61248.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306858174|gb|EFM90252.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306864984|gb|EFM96886.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871551|gb|EFN03274.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 462 Score = 249 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 92/422 (21%), Positives = 170/422 (40%), Gaps = 27/422 (6%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 K ++ + +++ + + VS AD + + L+ K G++ VI Sbjct: 24 SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFD 83 Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 +G + +IA ++ +SN+ V+ V VL G + +S Sbjct: 84 ANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEI 143 Query: 161 VELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVTLKVTIAEV 205 + L + + V+N N Q+ +K+T+AEV Sbjct: 144 NRIVGESLGAGKKVIETKLKHNNSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEV 203 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + +IG S + + AA G + G +++ + ++ AL+ Sbjct: 204 NKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGGQ----LALVNSNNLNVLISALDN 259 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + LAEP ++ +SG++A GG+ + G SV ++G+ L V Sbjct: 260 QNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKS 318 Query: 326 GRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 RI L + VS + +P + R++ +T E+ +G + +++GLL + + Sbjct: 319 DRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIK 378 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + F Sbjct: 379 KVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERF 436 Query: 444 FF 445 F Sbjct: 437 FN 438 >gi|90412176|ref|ZP_01220182.1| hypothetical Flp pilus assembly protein [Photobacterium profundum 3TCK] gi|90326900|gb|EAS43285.1| hypothetical Flp pilus assembly protein [Photobacterium profundum 3TCK] Length = 461 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 109/403 (27%), Positives = 182/403 (45%), Gaps = 45/403 (11%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + LN L+ ++ V VS P D V R + +F +GQA VI+ G D + +L+ Sbjct: 34 VTLNDANNLEFSQEIGTVFVSQPDILDYKVIDSRKLVIFSNKIGQAKVIVYGKDNQVLLS 93 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 ++ +++ + L+ + D +I V V + V + G V + + T LS+ Sbjct: 94 QRYHVDINLSQVRRQLKLYYPDLSISVTSVGEQVAIRGTVNNEKQRDDIYRMVATLLSKK 153 Query: 172 GRNQYANSSS----------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 +Y + + ++ L +A QV +K+++A+V ++ Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYTWEGIIEGLVVAQAQQVNVKISVAQVTKEF 213 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + IG S G S G TV++A+ Sbjct: 214 NETIGVDWSTVGRSVGEFSFLE-------------------FKANDLSTVINAIGNDNIA 254 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LAEP LT +SG+SASF GG+ + +T+++ ++G+ L + VLS +I Sbjct: 255 EILAEPNLTVLSGESASFLVGGEVPVIVT--NDNSTNISFKEFGIKLELSAKVLSNKKIK 312 Query: 330 LRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L++ EVS + + ++P R+A TT++L G + +L GL+ D + IPL Sbjct: 313 LQLAPEVSAVDGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISKIPL 372 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 L IPILGA FR S R++TE+ I AT LVKPV+ D+ P Sbjct: 373 LGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415 >gi|134295595|ref|YP_001119330.1| type II and III secretion system protein [Burkholderia vietnamiensis G4] gi|134138752|gb|ABO54495.1| type II and III secretion system protein [Burkholderia vietnamiensis G4] Length = 443 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 109/462 (23%), Positives = 175/462 (37%), Gaps = 45/462 (9%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 A A I + + + +Q V V DP ADV++ Sbjct: 4 TLTAFAMALWALTFASMASASGTIELAVGAQRQIAAGRALQRVAVGDPAIADVLIMKGSR 63 Query: 87 ---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 + L K G NV++ + ++ + ++ + + S +V+ Sbjct: 64 AGSVLLTAKAPGTTNVMVWERGHDEPTVWNVEV------VDAAAQAVLDASTPQVKAYGG 117 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 T VL G ++ +RAV +++ + + + K V+ + Sbjct: 118 TSVLRGTAGSLDAHERAVAVAKNMSPKGAVIDRSTLAGKNVVQVDVRVV----------- 166 Query: 204 EVRRDILKQIGFQH---------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 E R +LKQ+GF + + G AA F++ Sbjct: 167 EFSRSVLKQVGFNFFKQSNGFSFGSFSPGGVQSYNGGSGPGTAAYIPTLGAPVASAFNLV 226 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 L LE R LAEPTL A+SGQSASF +GG+ G+T++ Sbjct: 227 VNAAGHGIFADLSLLEANNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQ 285 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPS 364 YGV L TPTVLSP RI L++ E S+ + ++ +P R+ADTTVEL Sbjct: 286 WKQYGVGLSLTPTVLSPNRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGD 345 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G + V+ GL+ +PLL +PI+G F+N + + + E+ I TP LV P+A Sbjct: 346 GESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAK 405 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + V + Y AS + Sbjct: 406 GAVLPAT-----PGELAEQHDGPVWRSYLGGAASPDAAPGFS 442 >gi|319941902|ref|ZP_08016223.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis 3_1_45B] gi|319804555|gb|EFW01425.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis 3_1_45B] Length = 485 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 119/450 (26%), Positives = 211/450 (46%), Gaps = 36/450 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +S+ L + L + V V+ P+ A V R + +FG G+ +++++G DG+ + Sbjct: 1 MSVSLYQGKALSFNEQIGAVFVAQPSIASYQVVGNRKVVVFGSYPGKTSLMVLGTDGRTL 60 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS------------ 157 N + + D++ +EM L+ +++ ++D V + G V T Q++ Sbjct: 61 YNGLVEVAYDVSSMEMALKSSFPKLKLQLVALNDGVAVRGKVETAQEAANVVAFLDAMLQ 120 Query: 158 ---QRAVELSETFLSQSGRNQYANSSS-----------KKVMNLLNIAGEDQVTLKVTIA 203 Q+A + + Q S + K++N L + +QVT++V A Sbjct: 121 VNPQQAQMAAADVSAAGQEGQQEKSGAATGTGTLGARIGKIINQLTVTTPNQVTVRVRFA 180 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS----VKGVLDRFSFETV 259 EV R + Q+GF+ + S S +F + + + RF+F ++ Sbjct: 181 EVNRKLSDQLGFKWKGSYSGSRGGITFGSADNPIISNPNNSLGHLFDPATMAARFTFGSL 240 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 A+ + LAEP LT +SG++ASF +GGQ +++ G + DYGV+L T Sbjct: 241 FDAMASEELVSILAEPNLTVVSGETASFLAGGQIPFQSS-DGDGGFDIEFKDYGVLLSIT 299 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PT+LS RI LR++ EVSE P + VR+A++T+EL SG + +AGLLK Sbjct: 300 PTILSGNRISLRLRPEVSERSDSNGIQFMGSTQPGFIVRRAESTIELASGQSFAIAGLLK 359 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 +D IP ++ +PI+GAL R+ F R ETE+ I AT ++ P + + P++ Sbjct: 360 NDFSNTVNKIPGIADLPIIGALARSKAFERGETELVIVATAYISTP-SGEPYTIPNEEMY 418 Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 V + +F + ++ ++ Sbjct: 419 VPTIFERYFMDADPQVSSGTALKTARKPSF 448 >gi|264678238|ref|YP_003278145.1| type II and III secretion system protein [Comamonas testosteroni CNB-2] gi|262208751|gb|ACY32849.1| type II and III secretion system protein [Comamonas testosteroni CNB-2] Length = 523 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 121/444 (27%), Positives = 199/444 (44%), Gaps = 54/444 (12%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLV------------------------SDPTKA 77 I ++ L K +++ + + +LV Sbjct: 42 TAIRTEDPTTVTLGKSVVIPLSSPMARILVSGQTPGAGQAAAPMAANAQPQMQNGMGDI- 100 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-I 136 +V + SPR ++ G+ G NVIL G D+++ D L+ L + + I Sbjct: 101 EVQLLSPRDLFFRGRKSGSMNVILQNAQGAC-FIKDVIVTMDPGPLQAKLSELMPEERSI 159 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 RV+ + +VL G + V L+ + S SKK++NLL QV Sbjct: 160 RVQGADNALVLSGEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQV 208 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 L+V IAEV + +L ++G S+ G + F+S GG + + S Sbjct: 209 MLEVKIAEVSKTLLDKLGA--SLAGQRITSNGMNTFSIASNFLSGGGGLLSAMRIGKGSI 266 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYG 313 + + +R LAEP + AISGQ ASF SGG+ S+T V ++G Sbjct: 267 S--IDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSNTTGVPVMTLEEKEFG 324 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSG 365 + + FTPTVL R+ L++ +EVS+ + +PS VR+ADTTV+L G Sbjct: 325 IGVKFTPTVLGGSRVNLKLVSEVSDLSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDG 384 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++V+AGL+K++I + + P L +IP+LGAL R++ F ++TE+ TP LV+ +A Sbjct: 385 QSLVIAGLIKNNITEAVKRFPGLGEIPVLGALARSTEFQTDQTELMFIITPRLVQALA-E 443 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVN 449 P D++ V A+ + + Sbjct: 444 APRVPTDNHVVPSRAEVYLNGALE 467 >gi|84385704|ref|ZP_00988735.1| rough colony protein RcpA [Vibrio splendidus 12B01] gi|84379684|gb|EAP96536.1| rough colony protein RcpA [Vibrio splendidus 12B01] Length = 447 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 106/406 (26%), Positives = 171/406 (42%), Gaps = 36/406 (8%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +S+ + + ++ V V++ AD + + + ++G G ++I Sbjct: 23 ASELLSLDQGGAKTINIKRNIDTVFVANSQIADYKIIANGKLVIYGIGRGATSIIAYDRA 82 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G ++ N ++++ + + L+ TL D NI++ + + VVL G+V + + L Sbjct: 83 GNEIYNAEVVVNKSLRLLKQTLVARYPDENIKLTNIGEQVVLDGVVSSEEVKANVYRLVG 142 Query: 166 TFLSQ-----------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 + + + A + ++N L + +Q+ +K+T+AEV Sbjct: 143 EMMKKSKERHTFELSGANGESVDALDFTATYVFQDIINNLKVLTTEQINVKLTVAEVSSS 202 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G + A G G + V+ A Sbjct: 203 FLTELGVSY-------------AESNGKSIGGAGTFVNKILDFTAQDIVAVISASGNDNI 249 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 R LAEP L+ ISG+SASF GG+ S+T +YGV L V I Sbjct: 250 GRVLAEPNLSVISGESASFLVGGEIPI--AVRDNDGVSITYKEYGVKLSMVAKVTDSENI 307 Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS +PS R RKA TTV+L G + VLAGLL + Q+ Sbjct: 308 RLSLLPEVSSIDKANGVNSGLISVPSLRTRKAQTTVQLKDGQSFVLAGLLTTEEQESLSR 367 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IPLL IPILGALF + R +TE+ I AT LV PV ++ P Sbjct: 368 IPLLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKEDEIKLP 413 >gi|167587316|ref|ZP_02379704.1| type II and III secretion system protein [Burkholderia ubonensis Bu] Length = 477 Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 106/460 (23%), Positives = 176/460 (38%), Gaps = 54/460 (11%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHD 105 I + + + +Q V V DP+ ADV++ + L K G NV+L Sbjct: 29 SIDLAVGSQRQIAAGRALQRVAVGDPSVADVLIMKGSRAGAVLLVAKAPGSTNVMLWERG 88 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ ++ + S + D VL G ++ +RA + + Sbjct: 89 RDEPMVWNV------NVVDAAAHAVLDSSTPDAKAYGDVAVLSGSAASLDAHERAAAIGQ 142 Query: 166 TFL-----------------------SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 + V++ + G + V + V + Sbjct: 143 HMADKGGAAAGGNWGAGDAGATGKRGGGASGTLGKAGKGGAVIDASTVGGRNTVQVDVRV 202 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGV 250 E R +LK+ G + A + F++ Sbjct: 203 VEFSRSVLKEAGLNFFKQSNGFAFGAFTAGGLQSITGAATSAFQATAGIPVASAFNLVAN 262 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L LE R LA+PTL A+SGQSASF +GG+ V + G+T++ Sbjct: 263 SAGRGIFANLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIQWK 321 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGG 366 YGV L TPTVLSP RI L++ E S+ + +N+ +P+ R+ADTTVEL G Sbjct: 322 QYGVGLTLTPTVLSPRRIALKVAPESSQLDFLHGVTINSVAVPAITTRRADTTVELGDGE 381 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + V+ GL+ + +P+L +PI+GA F+ + + + E+ I TP LV P+A Sbjct: 382 SFVIGGLIDRETMSNVNKVPVLGDLPIIGAFFKTLNYQQNDKELVIIVTPHLVAPIAKGA 441 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 S P + + V + Y AS + Sbjct: 442 -SLP----ATPGELSEQRDGPVWRSYLGGIASPDAAPGFS 476 >gi|121607248|ref|YP_995055.1| type II and III secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121551888|gb|ABM56037.1| type II and III secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 714 Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 88/438 (20%), Positives = 172/438 (39%), Gaps = 41/438 (9%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 A+ P + + + + +I + + + + P V + V + Sbjct: 60 LQARKPAPTPSQPYLPIRKQDDQAQVPEIEMFVGESRVFPSPG-VARIAVGNGKVLTAAA 118 Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEM 140 R + +F VG +++ + DG+ ++ D + + F++ +N + + Sbjct: 119 LDEREVIVFANEVGTSSLFVWNEDGRYQRVKINVVPGDTSRYAREIAAFLSTIANTKASI 178 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLK 199 + D V++ G + D ++ +L + + +++N I E V + Sbjct: 179 IGDKVIVEGDNLSDIDLRKIEDLRKHY--------------PQIVNFTNQIGWEQMVLMD 224 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPS------------------KSFAADFGGKFVSE 241 V + E + L+++G + + G +S G + Sbjct: 225 VKVVEFPVNELRELGLRWAAKGGASIGGIWSPIRRVHQDGLRIDVESPPITAADGDLIPL 284 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 ++ L+ L L LA+P L+A +G A F +GG++ Y S + Sbjct: 285 PKGLNILSALN-MGLGAKLDLLASQGKASILAQPQLSARNGAKAEFLAGGEYPYVASSIN 343 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 V YG+ L TP V G I I +EVS ++ P+ VR+ T Sbjct: 344 GPT--VMFKPYGIRLKITPRVDRNGVIRAEIDSEVSNIDPSISTAAGPALSVRRTFTEFN 401 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +G T+VL+GL+ Q + +P L +P+LGALFR+ RF +ETE+ + TP ++ Sbjct: 402 VQNGETMVLSGLMSRKTSQNIDKVPFLGDLPVLGALFRSKRFQNDETELVVFVTPTVINS 461 Query: 422 VAM---RDLSRPDDHYSV 436 + + + R D Sbjct: 462 QSPGLVQRIERITDDLRQ 479 >gi|198284413|ref|YP_002220734.1| type II and III secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666419|ref|YP_002427081.1| bacterial type II/III secretion system protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248934|gb|ACH84527.1| type II and III secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518632|gb|ACK79218.1| bacterial type II/III secretion system protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 478 Score = 246 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 114/487 (23%), Positives = 189/487 (38%), Gaps = 43/487 (8%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++ L + A A + + + G + ++I + L Sbjct: 6 MSSLAVATLAALGSQGAWAEGPAAEGGAHPSWAAHQSGGYRALNIPVGTQQTLSFTEPAY 65 Query: 68 DVLVSDPTKADVVVH---SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 V V +P A V R + G + G ++++ K + + + Sbjct: 66 RVAVGNPKTASVAPLPRSGGRQFLITGLSTGTTSLLVWNLGHKTPKVWQLQVSVPVPGAP 125 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 + V D V L G V + A + KV Sbjct: 126 LAAPAPGMPE---VRAQGDAVTLSGAVADQVKH----------EAALEAAALAAGKTGKV 172 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGGKFV 239 ++ I +D+V + V + E + LK +G + + GPS +A++ Sbjct: 173 IDQSVIPVDDEVQVGVKVVEFSKAQLKNVGINIFSSTGGFSLGTFGPSTLTSANYPVSLA 232 Query: 240 SEGGD-------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S G F++ G + + L LE +R LAEPTL A++GQ AS Sbjct: 233 SGGPGALAITGVAPFTQAFNLVGGVGNSGLSSYLSLLEGNNILRVLAEPTLVAMNGQQAS 292 Query: 287 FTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340 F +GG+ SS T ++ YGV L TPT+LS RI L + VS Sbjct: 293 FLAGGEIPIPVPQSSGVGTPTITIQYKKYGVQLDLTPTILSAHRIALHVAPSVSSLDYTN 352 Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 I +N +P+ VR+ADTTV L +G ++V+ GL+ +QQ +P+L +PILGA FR Sbjct: 353 AITLNGYSVPALLVRQADTTVTLGNGESLVIGGLVDRQMQQNISKVPILGDLPILGAFFR 412 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + ++++++ E+ I TP LV+P+A P + F + + G Sbjct: 413 SIQYSKQDMELAIIVTPRLVRPIAAGAKLPPLPGAAFA--HSRFNLGKAVLLPGSDYNQP 470 Query: 460 VEGQNYK 466 G Y Sbjct: 471 DNGPGYS 477 >gi|84385684|ref|ZP_00988715.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01] gi|84379664|gb|EAP96516.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01] Length = 456 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 106/423 (25%), Positives = 189/423 (44%), Gaps = 47/423 (11%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A +I + + SI LN +Q+ + V +++P D + + T+ +F Sbjct: 17 APLIGLLSITNAFAADRSITLNDGQHIQLKSPIGQVFINNPDIVDYKIINDNTIVVFANA 76 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 +GQ+ +I+ G DG +L+ I+++ D+ + L+ ++ ++++ V + V + G+V + Sbjct: 77 IGQSRLIVYGIDGDVLLSDRIIVDLDLTDIRRQLKFHFPNAKVKIQSVGEQVAVSGLVDS 136 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSS------------------------KKVMNLLN 189 L T L + ++ + + ++ + Sbjct: 137 EATRDDIYRLVATLLGREKTEKWDKTVKLEFKSDSSNYEEPESFVFARNMTWEGIIERIE 196 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 +A QV +K+++A+V + +G S GSS G V Sbjct: 197 VATTQQVNVKISVAQVTESFGQTVGVDWSSVGSSVGEF-------------------VFD 237 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 D + T++ AL LAEP LT +SG+SASF GG+ +S+ +++ Sbjct: 238 QFDAANLSTLITALGNDQIAEVLAEPNLTVLSGESASFLVGGEVPVIVTTSNN--VNISF 295 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELPSGGT 367 ++G+ L T VLS RI +++ EVSE +P R+A TTVEL G + Sbjct: 296 KEFGIKLDLTAKVLSQDRIRMQLAPEVSEVEGYIETAGIKVPQLASRRAMTTVELADGDS 355 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 VL GL+ + + IP + IP+LGA FR + R+ TE+ I AT LV+P+ +D+ Sbjct: 356 FVLGGLMSSADLEKMQKIPFVGDIPVLGAAFRKATTERKRTELIIVATVNLVEPMKPKDI 415 Query: 428 SRP 430 P Sbjct: 416 QLP 418 >gi|238790280|ref|ZP_04634054.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii ATCC 33641] gi|238721630|gb|EEQ13296.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii ATCC 33641] Length = 463 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 107/440 (24%), Positives = 191/440 (43%), Gaps = 48/440 (10%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 A + + + I + + L+V V V +S+P AD V + + +F + Sbjct: 21 AAFIAMALMIGSAFSQDIYMEKGEARTLKVNAAVDTVFISNPDVADYEVIDEKQVVIFAR 80 Query: 93 NVGQANVILIGHDGK-QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G+A++ + G D ++ + I+++ + +++ + S+I ++ + VL G V Sbjct: 81 ENGRASLEIYGGDNNATLMTMSIIVDPLLGNIKKEMAEEYPGSDIDIKKYGEGYVLTGTV 140 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKV------------------------MNL 187 + L + V +N Sbjct: 141 PDEDAREGIYMTVGQALGLKRKETELKIKPGSVNSIGGDDSNDTPIDFMQKVVFEGLVNR 200 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L + +QV +K+T+ EV + + +G S + G Sbjct: 201 LKLPTTNQVNVKLTVVEVTKTFMDNVGVDWS-----------------NAGLGAGQFNLT 243 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 K D S ++++A++ + R LAEP L+ +SG++A F GG+ V++S +++ Sbjct: 244 KFRFDANSLNSLIYAIKNDSIARILAEPNLSVLSGETADFLVGGEIPI--VTTSMAGSTI 301 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSG 365 T ++GV L V S +I L + E+S + ++P R RKA TTVEL G Sbjct: 302 TYKEFGVKLVIAAKVESNNKIKLNLSEEISSLDGQYALGDLNIPKLRSRKARTTVELGDG 361 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + VL GLL ++ ++ GIP +S IPILGALFR + RE TE+ + AT LVKP++ Sbjct: 362 DSFVLGGLLNENEKESLSGIPFISDIPILGALFRRTGAERERTELVVVATVNLVKPISFN 421 Query: 426 DLSRPDDHYSVEDDAKAFFF 445 + P ++ + A+ FF Sbjct: 422 KVVLP--NFVRSNLAERFFN 439 >gi|148975962|ref|ZP_01812751.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium SWAT-3] gi|145964707|gb|EDK29960.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium SWAT-3] Length = 456 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 109/456 (23%), Positives = 193/456 (42%), Gaps = 64/456 (14%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MR R + L + ++ SI LN + Sbjct: 1 MRITHRVKRALFGSILVTLVGLLSTTNTFAADR-----------------SITLNDGQHI 43 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 Q + V +++P+ D + + T+ +F +VGQ+ +I+ G D +L+ I+++ ++ Sbjct: 44 QFKSPIGQVFINNPSIVDYKIINDNTLVVFANSVGQSRLIVYGVDDDVLLSDRIIVDLNL 103 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + L+ D+ ++V+ V + V + G+V + L T L + ++ + Sbjct: 104 TDIRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEATRDDIYRLVATLLGRDKTEKWDKTQ 163 Query: 181 S------------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + ++ + +A QV +K+++A+V + +G Sbjct: 164 KLEFKSDSSDYEEPESMVFARNMTWEGIIERIEVATTQQVNVKISVAQVTESFGQTVGVD 223 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 S GSS G V D + T++ AL LAEP Sbjct: 224 WSTVGSSVGEF-------------------VFDQFDAANLSTLITALGNDQIAEVLAEPN 264 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 LT +SG+SASF GG+ +SS +++ ++G+ L T VLS +I +++ EV Sbjct: 265 LTVLSGESASFLVGGEVPVIVSTSSN--VNISFKEFGIKLDLTAKVLSQDKIRMQLAPEV 322 Query: 337 SEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 SE + +P R+A TTVEL G + VL GL+ + + IP + IP+L Sbjct: 323 SEVEGYVEAAGIKVPQLASRRAMTTVELADGDSFVLGGLMSSADLEKMQKIPFVGDIPVL 382 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 GA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 383 GAAFRKATTERKRTELIIVATVNLVEPMKPKDIQLP 418 >gi|322419944|ref|YP_004199167.1| type II and III secretion system protein [Geobacter sp. M18] gi|320126331|gb|ADW13891.1| type II and III secretion system protein [Geobacter sp. M18] Length = 493 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 108/388 (27%), Positives = 164/388 (42%), Gaps = 35/388 (9%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGK----QMLNLDILIERDIAHLEMTLRRFIADSN 135 + S + L G +G ++I+ D+ + D +E L+ Sbjct: 115 EILSEYVLKLDGTAIGSTSMIIWTKGEGDERPAPTFFDLKVTGDREAIENQLKEMAPKET 174 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 I V+ SDTVVL G V Q +A E+++ F KV+N + + Q Sbjct: 175 IVVQYASDTVVLSGNVANDQTKTKAFEIAKAFAP-------------KVINNMTVNVPQQ 221 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF- 254 V L+V +A+V + LK++G I GS++ + A G G + Sbjct: 222 VLLQVKVAQVDKSSLKKLGISFLIKGSTAEGFSNLVAGPDGAVTGIGTGAATGIGDFPSL 281 Query: 255 ------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 VL AL + LAEP L S Q F +G + + S+ Sbjct: 282 DSFQAGVSYFPAGIGAVLSALSSKGLAKVLAEPNLLVRSSQEGYFLAGSKIPIAILESTG 341 Query: 303 GA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTT 359 G TS+ G+ L F P VL G I L+I EVS + P R +T+ Sbjct: 342 GQATTSIRYEPVGIKLKFKPEVLENGMISLKINPAEVSSIQGFLPVNGYPIIDTRTVETS 401 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VEL G +++LAGLL++D + IPLL IPILGALFR+S + +E E+ TP +V Sbjct: 402 VELKDGESLILAGLLQEDEIKNMSKIPLLGDIPILGALFRSSSSDIKEKELVFFITPKIV 461 Query: 420 KPVAMR-DLSRPDD-HYSVEDDAKAFFF 445 +P A + P D + E + + + Sbjct: 462 QPTAPGVKVEMPTDKKLTPEQEKELSWM 489 >gi|320101627|ref|YP_004177218.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] gi|319748909|gb|ADV60669.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] Length = 712 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 101/536 (18%), Positives = 192/536 (35%), Gaps = 102/536 (19%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA-------DV 79 P + + + ++ ++S+ + + ++Q+ ++ +P A DV Sbjct: 151 PNPRPITGQIAELFELIQDPSVELSVVVGRGKVIQLREQPLRFILGNPRIATLSFPPSDV 210 Query: 80 VVH-------SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 R ++G G + + + + + D ++ +R Sbjct: 211 QSLAQLDRPSDARLFVVYGIQAGTTTLTIWDKNN-VPTTFLVRVSVDTLDIQNQIRAVFP 269 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE--------------------------- 165 +++ V ++ ++L G V + + L Sbjct: 270 GTDVTVRQSANQIILEGQVPDTKTMNEVIRLVNGLLVSNQAGEVRAPTGAGGGGGGQSVG 329 Query: 166 --TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------ 217 ++ ++ + S +++N L + G Q+ LKV +AE+ R +++IG Sbjct: 330 AFAAAERALGDEAPSGISPQIINRLRVPGPRQILLKVKLAELNRTAIREIGANWLRGRNN 389 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVK----------------------------- 248 S+ GS G F + + + S Sbjct: 390 SLIGSQIGGIAGFTTETNTQMTAAFAAPSFGRPGIAGGQPIPGSVTGSLIQGIDTLLNAT 449 Query: 249 ------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G+ F+ L+AL LAEP LTA+ GQ A +GG+ + Sbjct: 450 AGSALQPSAQLFGIFRAGEFDLFLNALRTNNLATILAEPNLTALDGQPARVIAGGEIPFP 509 Query: 297 TVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAG 346 ++ +G +L F P +L I L ++ S P G +N Sbjct: 510 VPQLGAGGGGGGAVITIQFRPFGAILTFLPQILEDDLIRLDVEPVFSTPNQGLGTSINGT 569 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P + R A T V+L G T+ +AGL++ + Q IPLL PI+G LF +RF Sbjct: 570 AVPGFNTRSARTVVQLREGETLAIAGLIQKNNQAATNRIPLLGDAPIVGPLFSRNRFETL 629 Query: 407 ETEIFIAATPFLVKPVAMRDLS-RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 ETE+ + TP+L+ P+ ++ P D+ +D + F R G S ++ Sbjct: 630 ETELIVIVTPYLIAPMGEGEVPKVPTDYVDEPNDIEFFILGRTEGKTGIPHRSTIQ 685 >gi|153833257|ref|ZP_01985924.1| general secretion pathway protein D [Vibrio harveyi HY01] gi|148870528|gb|EDL69443.1| general secretion pathway protein D [Vibrio harveyi HY01] Length = 456 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 109/406 (26%), Positives = 184/406 (45%), Gaps = 47/406 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN + V + V +S+P AD V + T+ +F +GQ+ +I+ G D +L Sbjct: 34 SITLNDGQHISVKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQSRLIVYGIDEDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ D+ + L+ D+ + V+ V + V + G+V + + L T L + Sbjct: 94 SDRIIVDLDLTEIRRQLKFHFPDAKVTVQSVGEQVAVGGVVDSEETRDEIYRLVATLLGR 153 Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ + K ++ + +A QV +K+++A+V Sbjct: 154 EKTEKWDKTYKFEFKSDYAQYEEPEGMIFARNMTWKGIVERIQVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 K +G S GSS G V D + T++ AL Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LAEP LT +SG+SASF GG+ + S+ +++ ++G+ L T VLS Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPV--IVSTNNNVNISFKEFGIKLDLTAKVLSQD 312 Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I +++ EVSE + +P R+A TTVEL G + +L GL+ + + Sbjct: 313 KIRMQLAPEVSEVESYVEAAGVKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + IPILGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 IPFVGDIPILGAAFRKATTERKRTELIIVATVNLVEPIKPKDVQLP 418 >gi|188592032|ref|YP_001796630.1| type II secretion system protein; precursor [Cupriavidus taiwanensis LMG 19424] gi|170938406|emb|CAP63393.1| putative Type II secretion system protein; putative precursor [Cupriavidus taiwanensis LMG 19424] Length = 475 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 97/463 (20%), Positives = 181/463 (39%), Gaps = 45/463 (9%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 +Q+T +++ ++A + A + +++ + L+ Sbjct: 8 IQKTSAHAVTLRRRLLQLTLAAMIATTAWCALAPRAQAQDAATARQLRLMAGAQKELRSA 67 Query: 64 VDVQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 V+ V V +P AD ++ R ++ L K G +V++ G + N + Sbjct: 68 QPVERVAVGNPAVADALILRTRGAPSVLLVAKQPGVTDVMVWTRGGAEPQNYSV------ 121 Query: 121 AHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + D+N ++ + V + G + +++ + Sbjct: 122 -----QVDAIAPDANGAQLGYSAAGVTITGQSPDAYGAA-----RAQAAARAATAGKTDG 171 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 V++ + V + V + E+ + +LK++G S + Sbjct: 172 KPGLVVDRSTVPLSGTVQVDVKVVEISKTVLKEVGINFFRNNSGFAFGTFSPSTLNKFTF 231 Query: 240 SEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISG 282 + G + + LE R LAEP+L A+SG Sbjct: 232 TPGSGGAPGSFSADIASPMSNAFNLVAASLTHGIFANISLLEANGLARVLAEPSLVALSG 291 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 QSASF +GG+ V + G T++ +G+ L +PTVLS RI L++ E S+ Sbjct: 292 QSASFLAGGEIPIP-VPQALGTTTIQFKPFGIGLTVSPTVLSADRIALKVAPEASDLDPS 350 Query: 343 ----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 +N +P+ R+ADTTVEL G + V+ GL+ + +P+L +P++GA F Sbjct: 351 RGISINGAVVPAIVTRRADTTVELGDGESFVIGGLVSRNTVSNVNKVPVLGDLPVIGAFF 410 Query: 399 RNSRFNREETEIFIAATPFLVKPVA---MRDLSRPDDHYSVED 438 +N F++E+ E+ I TP LVKP+A + D + Sbjct: 411 KNLNFHQEDRELMIVVTPRLVKPMAKNSPAAQAVGADGRTSAS 453 >gi|149188846|ref|ZP_01867136.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1] gi|148837266|gb|EDL54213.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1] Length = 453 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 104/415 (25%), Positives = 186/415 (44%), Gaps = 47/415 (11%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + + I +N +++ + V VSDP D V + ++ +F K VGQA +++ Sbjct: 22 SSMAYSGETYITVNDAKNIELSERITKVFVSDPDIVDYNVINENSIVIFSKAVGQARLMI 81 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G K + + I+ + D++ + + D+++++E V + V + G+V + ++ Sbjct: 82 YGESEKLLYSERIIADIDLSQVRRQVALLFPDTSVKIESVGNQVAVSGIVNSERERDDIY 141 Query: 162 ELSETFLSQSGRNQYANSSS------------------------KKVMNLLNIAGEDQVT 197 L T L + ++ ++ L +A QV Sbjct: 142 RLVATLLGREKLEKWDKVQKLKFQNDNISIEEPESMIFERNMTWDGIIERLEVATVQQVN 201 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 +K+++A+V + +G S G++ G + + Sbjct: 202 VKISVAQVTERFAETVGVDWSSFGANVGQF-------------------LFQQFEAADLT 242 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 T++ AL + LAEP LT ISG+SASF GG+ + S+ ++T ++G+ L Sbjct: 243 TLITALGNENVAQVLAEPNLTVISGESASFLVGGEVPV--IVSTNNNVNITFKEFGIKLD 300 Query: 318 FTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 T VL+ +I +++ EVSE I ++P R+A TT+EL G + VL GL+ Sbjct: 301 LTAKVLTEEKIRMQLFPEVSEIERYIRAAGIEVPQLATRRAMTTIELGDGDSFVLGGLMS 360 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 + + PL+ IP+LGA FR S +R TE+ I AT LVKP+ +D+ P Sbjct: 361 SADFEEIQKTPLIGDIPVLGAAFRKSSTDRRRTELIIVATVNLVKPMKRKDIQLP 415 >gi|116620532|ref|YP_822688.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223694|gb|ABJ82403.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 529 Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 95/418 (22%), Positives = 178/418 (42%), Gaps = 32/418 (7%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 G GK + + + K +I+ P+++Q + V++ + V +P+ + + GK G Sbjct: 50 ASQDVQPAPGPGK-LMVTVGKSLIIDSPMNIQRISVANGELIEAVAVNPKEVLINGKAAG 108 Query: 96 QANVILIGHDGKQMLN--LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 + +I+ G ++L + + + L R D I V ++ + G V+ Sbjct: 109 ETTLIIWQQGGNRLLYDLTVRISPVRLDVVRQQLARDFPDDEINVTYDNEVAFVRGRVKD 168 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRDIL 210 + + R + ++ + K +NLL + Q+ L V A V R Sbjct: 169 LSAADRVMAIAASL--------------GKTVNLLRVDVPPVETQILLHVRFANVDRGAS 214 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----GDFSVKGVLDRFSFETVLHALER 265 +G + + + + ++G ++ + + ALE Sbjct: 215 TDLGVSLATGAFNQSTAITTGQYPPPTVGTDGRVSISDALNILLFRKDINLGATIKALES 274 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVL 323 + TLAEP + AI+G+ A+F +GG+ V GA S+T ++G+ ++F P + Sbjct: 275 KRMLETLAEPNVMAINGKPAAFIAGGEFPVPMVQGGGLAGAVSITFREFGIRINFLPKIT 334 Query: 324 SPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 G I L + EVS + +P+ R+ T VEL +G + V+AGLL + Sbjct: 335 PRGTIQLAVAPEVSSLDYSNAVTFQGYTIPALATRRIQTEVELETGQSFVIAGLLDNRTT 394 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + IP LS IP+LG LF++ + TE+ + TP +V+P+ P + +V Sbjct: 395 ETLNKIPGLSNIPLLGKLFQSRAVAKNNTELMVIVTPEIVRPIQAGQ-PLPSLNMTVP 451 >gi|172060495|ref|YP_001808147.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] gi|171993012|gb|ACB63931.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] Length = 461 Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 108/448 (24%), Positives = 169/448 (37%), Gaps = 45/448 (10%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQA 97 I + + + +Q V V DPT ADV++ + L K G Sbjct: 36 ASIASASGTIELAVGAQRQISAGRALQRVAVGDPTIADVLIMKGSRSGSVLLTAKAPGAT 95 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 NV+L + I + ++ + S +V+ T VL G T+ Sbjct: 96 NVMLWERGHDEPTVWSIEV------VDAAAHAVLDGSMPQVKAYGGTSVLRGTSATLDAH 149 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 +RA +++ + + + K V+ + E R +LKQ+GF Sbjct: 150 ERAATVAKNMSPKGTVIDRSTLAGKSVVQVDVRVV-----------EFSRSVLKQVGFNF 198 Query: 218 ---------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 + + G A F++ L Sbjct: 199 FKQSNGFSFGSFSPGGVQSYNGGSGPGTAGYIPALGAPVASAFNLVVNAAGRGIFADLSL 258 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE R LAEPTL A+SGQSASF +GG+ G+T++ YGV L TPTV Sbjct: 259 LEANNMARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTV 317 Query: 323 LSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 L P RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 318 LGPNRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQT 377 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 +PLL +PI+G F+N + + + E+ I TP LV P+A + Sbjct: 378 MSNVSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PG 432 Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + V + Y AS + Sbjct: 433 ELSEQRDGPVWRSYLGGAASPDAAPGFS 460 >gi|78066131|ref|YP_368900.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383] gi|77966876|gb|ABB08256.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383] Length = 443 Score = 243 bits (619), Expect = 7e-62, Method: Composition-based stats. Identities = 121/469 (25%), Positives = 186/469 (39%), Gaps = 49/469 (10%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L +++ L + AA IS+ + L +Q V V DP+ Sbjct: 5 LIGLAIALSALAMPPLSGAA---------DTSGTISLAVGAQRQLATGRALQRVAVGDPS 55 Query: 76 KADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 ADV+V + L K+ G NV++ + ++ + A R + Sbjct: 56 VADVMVVKGGRGGVLLIAKSAGATNVMIWERGHDEPTVYNVSVTSGAA------RALLDG 109 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 V T V+ G ++ QRAV ++T + G A++ S K + +++ Sbjct: 110 GTSSVNTYGGTTVIGGASGSLDGHQRAVHAAKTVSGKDGTTIDASTISGKNVVQVDVRVV 169 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--------- 244 E R +LKQ G + S GG Sbjct: 170 ----------EFSRSVLKQAGLNFFKQSNGFSFGAFAPTGLTSITGSPGGALTYNTNVPI 219 Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 F++ L LE R LA+PTL A+SGQSA+F +GG+ V S Sbjct: 220 SSAFNLVVNSVSHGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VPQS 278 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKAD 357 G S+ YGV L TPTVL+P RI L++ E S+ I +N +P+ R+AD Sbjct: 279 LGTISIEWKPYGVGLTVTPTVLNPRRIALKVAPESSQLDFVHSITINGVQVPALTTRRAD 338 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTVEL G + V+ GL+ + +P L +PI+GA F+N + + + E+ I TP Sbjct: 339 TTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQSDKELVIIVTPH 398 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 LV P+A S P + + V + Y AS G + Sbjct: 399 LVAPIAQGA-SLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442 >gi|218459699|ref|ZP_03499790.1| cpaC pilus assembly Q protein [Rhizobium etli Kim 5] Length = 409 Score = 243 bits (619), Expect = 7e-62, Method: Composition-based stats. Identities = 110/416 (26%), Positives = 187/416 (44%), Gaps = 32/416 (7%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 +R T L + + L P A+ S + +++ N+ + L Sbjct: 6 RRIARTKSLAALAAVFSACVCLGPGFAGFASAQEKSVTLGKSVQHVTLPPNETLTLNTGQ 65 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 D+++ DVV S R++++ GK +G N+ + G D + +DI + D + + Sbjct: 66 PFGDLVIGSADMIDVVPLSDRSLFVRGKKIGATNISVYGDDKSLLGVIDIRVASDFSEVA 125 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 +R + +RV +D + L G+VR + QR +E+++++ S + V Sbjct: 126 SAIRSAAPSARVRVVNSNDRIRLVGVVRDGIELQRVLEIAQSY------------SEQPV 173 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------- 235 +N L ++ QV L+V I E R + +G S GS+ + + Sbjct: 174 LNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGQGSNGIGKATTSQGITVNDDGNLAR 233 Query: 236 ---------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + G + + + + V++ALE+ +R LA+P L A+SG +AS Sbjct: 234 TLLDPKGAATGMLPFGQLIAKVLQISGGNIDVVINALEQKGLVRRLAQPNLIAMSGSTAS 293 Query: 287 FTSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 F +GG+ T + +T AT +GV L F P VL G I L I+ EVSE +N Sbjct: 294 FHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGVINLEIEPEVSELDPAIN 353 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 P + R A TTV L G + +AGLL+ + + +P L +IP+LGALFR+ Sbjct: 354 VNGNPGFISRAASTTVALRDGQSFAMAGLLQSINAKDIQQLPGLGQIPVLGALFRS 409 >gi|163801677|ref|ZP_02195575.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4] gi|159174594|gb|EDP59396.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4] Length = 456 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 106/406 (26%), Positives = 184/406 (45%), Gaps = 47/406 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN + V + V +S+P AD V + T+ +F K VG + +++ G + +L Sbjct: 34 SITLNDGKHISVKQPIGKVFISNPDIADYKVINDTTLVVFAKGVGHSRLLVYGANEDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ D+ + L+ D+ + V+ V + V + G+V + + L L + Sbjct: 94 SDRIIVDLDLTQIRRQLKFHFPDAKVTVQSVGEQVAVSGVVDSEETRDAIYRLVANLLGR 153 Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ +SS + ++ + +A QV +K+++A+V Sbjct: 154 EKTEKWESSSKRSFKSDHGTFEEPESMIFARNMTWEGIIEQIQVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 K +G + GSS G V D + T++ AL Sbjct: 214 ESFGKTVGVDWNSVGSSVGGF-------------------VFDQFDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LAEP LT +SG+SASF GG+ ++ T+++ ++G+ L VLS Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPVIISDANG--TNISFKEFGIKLDLAAKVLSQD 312 Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I +++ EVSE + +P R+A TTVEL G + +L GL+ + + Sbjct: 313 KIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + IPILGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 IPFIGDIPILGAAFRRATTERKRTELIIVATVNLVEPIKPKDVHLP 418 >gi|261856884|ref|YP_003264167.1| type II and III secretion system protein [Halothiobacillus neapolitanus c2] gi|261837353|gb|ACX97120.1| type II and III secretion system protein [Halothiobacillus neapolitanus c2] Length = 443 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 95/423 (22%), Positives = 159/423 (37%), Gaps = 30/423 (7%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 +V S +++ + ++ P + V V + +V V R M + Sbjct: 22 SVPVFSADAPALPDAVTMYAGQALVRSAPGSLLRVAVGNGKLVEVRVLGRRQMVIIANQA 81 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRT 153 G ++ L DG + ++ + + +R + S + V V VVL G+ T Sbjct: 82 GDTSLQLWMRDGSRRSIDLHIVSGNTDQVAELVRTLLKASKAVSVNTVGGNVVLSGVNLT 141 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 +D + + + + Q + + V +KV I E + L QI Sbjct: 142 QEDVAQIAAIKKVYPQVLDFTQANA-----------VQMKPMVMMKVRIMEFDKSALHQI 190 Query: 214 GFQHSITGSSSGP-----------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 G + G S G + + S Sbjct: 191 GIKWDSVIDGPGGALAHDFASNSLYRMTPSSFGGIGANGAVNLPLSLSGTPAFFGLVTSI 250 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 + ++ + + LA P L A SG +A F GG+ G TSV YG+ L Sbjct: 251 TSKINLMMQTGNAWELATPQLAARSGGTADFLVGGEVPIPIA-QGLGQTSVEYKPYGIKL 309 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 H P V S G I I+ E+S V P + RKA T V + G TIV++GL+ Sbjct: 310 HIEPVVSSTGDISTTIKAEISHIDPSVTVQGYPGFLTRKASTEVNVHEGQTIVISGLVDS 369 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + + +P L +IP+LG LFR+ F + +++ I TP+LV P A + + + Sbjct: 370 SASKTIDKVPGLGQIPVLGELFRSRDFKSKRSDLVIFVTPYLVTPDAPLNKALISKSNKL 429 Query: 437 EDD 439 D+ Sbjct: 430 ADE 432 >gi|322434104|ref|YP_004216316.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] gi|321161831|gb|ADW67536.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] Length = 484 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 111/503 (22%), Positives = 194/503 (38%), Gaps = 64/503 (12%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVA------------KLPPIKEANAAVINISDVEIGKGK 48 M +R T L ++ A+ A + ++G + Sbjct: 1 MNVKKRIPLTSFVPALLLLAGTLPFNPCSAFAQSVQAPGDSPTAHEARKRMDMHDMGGDE 60 Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 + + + ++L +++ + V +PT P + L K G +++++ G+ Sbjct: 61 TLHLLVGHSMVLHSTSNIKRIFVGNPTVLQSYTGGPSEIVLTAKATGVSSLVVWDTQGQS 120 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 L I + D L+ ++ S I V + L G V T + S A +L+ ++ Sbjct: 121 CL-YTIAADMDPETLQRSMHDAYPKSQIDVGGHEGRIFLSGTVPTQEASDNAFKLASSYS 179 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 V+N + + QV LK+ I EV R ++Q G +S+ Sbjct: 180 KD-------------VVNSIRVVTIHGKQVQLKLRIVEVDRTKMEQFGINLFRPTASNAV 226 Query: 227 SKSFAADFGG------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 F ++ + + LE+ Sbjct: 227 GGLTTGQFPSLATYATGTPATATAPAVPATINVNNPLNFFIYSFSHEIGATIQDLEQKQI 286 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLS 324 ++ LAEPTLTA+SGQSA F SGG+ + V A +++ YGV + FTPTV Sbjct: 287 LQVLAEPTLTAMSGQSAKFLSGGEFPFPVVQGGGSAAGVAITISFRPYGVKVDFTPTVNE 346 Query: 325 PGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 G I L++ EVS + ++ +P+ R+A+T VE+ +G T L GLL + Sbjct: 347 DGSIHLKVAPEVSTLDFSNAVTISGFTIPALSTRRAETEVEILNGQTFALTGLLDHRTTE 406 Query: 381 LKEGIPLLSKIPILGALF-RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV--- 436 IP +S++PILG LF + E+ + T +V P L++P D Sbjct: 407 SLSQIPGISRLPILGKLFATTKSYTHSVIELVVLVTANVVDP-----LTQPTDTTQPDMA 461 Query: 437 -EDDAKAFFFNRVNKIYGPKEAS 458 + K+ F N ++K + Sbjct: 462 VPNLDKSVFDNDLSKEQKLPKKP 484 >gi|156977409|ref|YP_001448315.1| Flp pilus assembly protein, secretin CapC [Vibrio harveyi ATCC BAA-1116] gi|156529003|gb|ABU74088.1| hypothetical protein VIBHAR_06196 [Vibrio harveyi ATCC BAA-1116] Length = 456 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 105/406 (25%), Positives = 183/406 (45%), Gaps = 47/406 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI L+ + + + V +S+P AD V + T+ +F +GQA +I+ G D +L Sbjct: 34 SITLHDGQHISLKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQARLIVYGIDEDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ D+ + ++ D+ + V+ + + V + G V + + L T L + Sbjct: 94 SDRIIVDLDLTDVRRQIKFNFPDAKVTVQSIGEQVAVSGFVDSEETRDEIYRLVATLLGR 153 Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ + + ++ + +A QV +K+++A+V Sbjct: 154 EKIKKWDKADKFEFKSDYAQYEAPEGMIFARNMSWRGIVERIEVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 K +G S GSS G V D + T++ AL Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LAEP LT +SG+SASF GG+ + S+ +++ ++G+ L T VLS Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPV--IISTNNNVNISFKEFGIKLDLTAKVLSKD 312 Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I +++ EVSE + +P R+A TTVEL G + +L GL+ + + Sbjct: 313 KIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + IPILGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 IPFVGDIPILGAAFRKAMTERKRTELIIVATVNLVEPIKPKDVQLP 418 >gi|116626779|ref|YP_828935.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116229941|gb|ABJ88650.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 471 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 101/434 (23%), Positives = 183/434 (42%), Gaps = 42/434 (9%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + A A A + + ++ + +L D+ V +S+P Sbjct: 7 LLRAALISAVWAAGCFAQATKPQV--------RDFTLLEGRGELLTFQNDITKVAISEPK 58 Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 AD VV SPR + + K G+A +++ G + +I + +D +M + I + Sbjct: 59 IADAVVISPREVMVNAKGPGRATLVVW-ETGLDPVRYEIAVTKDTTEWDMFTKSMIDSAG 117 Query: 136 --IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 I + DT+VL G+V++ D++R +++T A ++ Sbjct: 118 VPIHITGSGDTIVLSGVVKSADDAKRLAGMAQTRAKTVINLLQAPPPAE----------P 167 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----------AADFGGKFVSEG 242 Q+ L+V A + R L QIGF T + S G+ V+ Sbjct: 168 RQILLQVKFAAIDRVALTQIGFNLFSTNDKFIGASSTEQFSSPRFSQLQPTGTGQTVNFS 227 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 ++ + + ALE ++ LAEP L + G+ A+F +GG Y T++++ Sbjct: 228 DLLNLFAFRPDLNIGATIKALEERNLLQILAEPNLLCLDGKEATFLAGGTFPYPTITTTP 287 Query: 303 GAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYR 352 +V +GV L F PTV G I L++Q EVS + + +P+ Sbjct: 288 TGGATAPVITVQFKPFGVKLDFQPTVTPQGSIDLKVQPEVSSLDYANAVTLQGFVIPALS 347 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+A+T + L G + +AGL+ + + + +P L +P+LG +FR+ + E+ + Sbjct: 348 QRRAETEIILKDGESFAIAGLIDNRVIETLSKVPGLGDLPVLGKIFRSRSTQKSADELLV 407 Query: 413 AATPFLVKPVAMRD 426 TP VKP+ + Sbjct: 408 VVTPHFVKPLTPEE 421 >gi|161524905|ref|YP_001579917.1| type II and III secretion system protein [Burkholderia multivorans ATCC 17616] gi|189350345|ref|YP_001945973.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|160342334|gb|ABX15420.1| type II and III secretion system protein [Burkholderia multivorans ATCC 17616] gi|189334367|dbj|BAG43437.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 443 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 107/445 (24%), Positives = 167/445 (37%), Gaps = 45/445 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH---SPRTMYLFGKNVGQANVI 100 I + + + +Q V V DP ADV++ ++ L K G NV+ Sbjct: 21 ASASGTIELAVGAQRQISAGRPLQRVAVGDPAIADVLIMKGSRSSSVLLIAKAPGATNVM 80 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + + + ++ + DS RV T VL G ++ +RA Sbjct: 81 LWERGRDEPTVWSVEV------VDAAAHAVLDDSAPRVNAYGGTAVLRGTSASLDAHERA 134 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V + + + + + K V+ + E R +LKQ+GF Sbjct: 135 VAVGKNMAGKGAVIDRSTLAGKSVVQVDVRVV-----------EFSRSVLKQVGFNFFKQ 183 Query: 221 GSSSGPSKSFAAD---------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + + F++ L LE Sbjct: 184 SNGFSFGSFLPSGVQSFGGGSGPGSAGYIPTLGSPVASAFNLVVNAAGRGIFGDLSLLEA 243 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R LAEPTL A+SGQSASF +GG+ G+T++ YGV L TPTVLSP Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTVLSP 302 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL +PI+G F+N + + + E+ I TP LV P+A + Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPAT-----PGELS 417 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 418 EQRDGPVWRSYLGGVASPDAAPGFS 442 >gi|206559894|ref|YP_002230658.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|198035935|emb|CAR51827.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 443 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 121/469 (25%), Positives = 189/469 (40%), Gaps = 49/469 (10%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L +++ L ++AA IS+ + + +Q V V DP+ Sbjct: 5 LIGLAIALSALAMPPLSDAA---------DTSGTISLAIGAQRQIATGRALQRVAVGDPS 55 Query: 76 KADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 ADV+V + L KN G NV++ + ++ + A R + Sbjct: 56 VADVLVVKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVTSGAA------RALLDG 109 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 ++ V T V+ G T+ QRAV ++T + G A++ S K + +++ Sbjct: 110 TSPSVNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTTLDASTISGKNVVQVDVRVV 169 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--------- 244 E R +LKQ G + + GG Sbjct: 170 ----------EFSRSVLKQAGLNFFKQSNGFSFGAFAPTGLTSISGTPGGSLTYNTSVPI 219 Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 F++ L LE R LA+PTL A+SGQSA+F +GG+ V S Sbjct: 220 SSAFNLVVNSVSRGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VPQS 278 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKAD 357 G S+ YGV L TPTVLSP RI L++ E S+ I +N+ +P+ R+AD Sbjct: 279 LGTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRRAD 338 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTVEL G + V+ GL+ + +P L +PI+GA F+N + + + E+ I TP Sbjct: 339 TTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVTPH 398 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 LV P+A P + + V + Y AS G + Sbjct: 399 LVAPIAQGA-PLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442 >gi|187926427|ref|YP_001892772.1| type II and III secretion system protein [Ralstonia pickettii 12J] gi|241665914|ref|YP_002984273.1| type II and III secretion system protein [Ralstonia pickettii 12D] gi|187728181|gb|ACD29345.1| type II and III secretion system protein [Ralstonia pickettii 12J] gi|240867941|gb|ACS65601.1| type II and III secretion system protein [Ralstonia pickettii 12D] Length = 454 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 101/438 (23%), Positives = 181/438 (41%), Gaps = 41/438 (9%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 + + + AA ++ + E + + + +++ ++ + + +P A Sbjct: 4 AAMVRGWMGGLALGCAAFVSSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIA 63 Query: 78 DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 D ++ R ++ + K G ANV++ G ++ ++ + Sbjct: 64 DALLLKGRGTATSVLIIAKKPGAANVMVWTQGG-VATTYNVQVDAAAP---------VPG 113 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 + V DT V+ G + L+ S + + V++ ++ Sbjct: 114 -DPAVVAQGDTAVVSGQPKD------VYALARARRSAAAASGAEKPKDGNVIDTTSMNVP 166 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSE------G 242 V + V + E + +LK+ GF + PS FG +S G Sbjct: 167 GTVQVDVRVVEFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTESTMPIG 226 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F++ L LE R LAEP+L A+SGQSA+F +GG+ V + Sbjct: 227 SAFNLLVSSVSKGLFADLSLLESNGMARVLAEPSLVALSGQSANFLAGGEIPIP-VPQAL 285 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADT 358 G T++ +G+ L +PT+LS RI L++ E S+ + +N +P+ R+ADT Sbjct: 286 GTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADT 345 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TVEL G + V+ GL+ + +P L +PI+G F+ +N+EE E+ I TP L Sbjct: 346 TVELGDGESFVIGGLVSRSTLSNVDKVPFLGDVPIIGTFFKRLNYNQEERELVIIVTPHL 405 Query: 419 VKPVAMRDLSRPDDHYSV 436 VKP+A P D Sbjct: 406 VKPMARNA---PIDKMLP 420 >gi|107022594|ref|YP_620921.1| type II and III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116689543|ref|YP_835166.1| type II and III secretion system protein [Burkholderia cenocepacia HI2424] gi|170732847|ref|YP_001764794.1| type II and III secretion system protein [Burkholderia cenocepacia MC0-3] gi|105892783|gb|ABF75948.1| type II and III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116647632|gb|ABK08273.1| type II and III secretion system protein [Burkholderia cenocepacia HI2424] gi|169816089|gb|ACA90672.1| type II and III secretion system protein [Burkholderia cenocepacia MC0-3] Length = 443 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 121/469 (25%), Positives = 189/469 (40%), Gaps = 49/469 (10%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L +++ L ++AA IS+ + + +Q V V DP+ Sbjct: 5 LIGLAIALSALAMPPLSDAA---------DTSGTISLAIGAQRQIATGRALQRVAVGDPS 55 Query: 76 KADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 ADV+V + L KN G NV++ + ++ + A R + Sbjct: 56 VADVLVVKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVTSGAA------RALLDG 109 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 ++ V T V+ G T+ QRAV ++T + G A++ S K + +++ Sbjct: 110 TSPSVNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTTLDASTISGKNVVQVDVRVV 169 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--------- 244 E R +LKQ G + + GG Sbjct: 170 ----------EFSRSVLKQAGLNFFKQSNGFAFGAFAPTGLTSITGTPGGSLTYNTSVPI 219 Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 F++ L LE R LA+PTL A+SGQSA+F +GG+ V S Sbjct: 220 SSAFNLVVNSVSRGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VPQS 278 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKAD 357 G S+ YGV L TPTVLSP RI L++ E S+ I +N+ +P+ R+AD Sbjct: 279 LGTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRRAD 338 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTVEL G + V+ GL+ + +P L +PI+GA F+N + + + E+ I TP Sbjct: 339 TTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVTPH 398 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 LV P+A P + + V + Y AS G + Sbjct: 399 LVAPIAQGA-PLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442 >gi|307944371|ref|ZP_07659712.1| putative type III secretion component [Roseibium sp. TrichSKD4] gi|307772717|gb|EFO31937.1| putative type III secretion component [Roseibium sp. TrichSKD4] Length = 411 Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 98/398 (24%), Positives = 169/398 (42%), Gaps = 18/398 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 I++ I+L+ V V + A+V + + +Y+ G G N+++ Sbjct: 15 SSSNAAPPINLTKGFGILLRFNEPVASVFIGSNEIAEVQAVNEKAIYVSGLTAGTTNLLV 74 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + +D + + I++ L I + ++ V+ +T ++ G V I D+ Sbjct: 75 MNYDNDIIRSHAIVVHPVNNETSYLLENLIPNGDVTVQSSGNTSIIRGNVDNIDDADDIR 134 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 E+ +KV++ + QV+LKV I E+ R L ++GF S Sbjct: 135 EVKTRL----------EEQGRKVIDKTTTSTPVQVSLKVRIVELYRADLIKLGFDVSSVS 184 Query: 222 SSSGPSKSFAADFGGKFVSEGGD-------FSVKGVLDRFSFETVLHALERATAIRTLAE 274 S S + F+S + G + F+ +L LE+ I+ LAE Sbjct: 185 SGSVFKVVTGSGIAQDFMSTLIGSVEGQTRVGISGANNSFNVNAMLDLLEKRGYIQILAE 244 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P LT ++G+ A+F SGG+ +V+ G + + G+ + F P +L +I + I + Sbjct: 245 PRLTTVTGEKATFRSGGEF-AVSVNQGNGVFTAEYKETGISIDFIPEILPGDKISIDISS 303 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 E+ P+ VR T ++ SG T LAGL + K G P LSKIP+ Sbjct: 304 EIKFVDPQSVVNSAPALLVRSVQTNAQVASGQTFALAGLYQLTQSSSKSGPPYLSKIPVF 363 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 G L + +REE E+ TP+LV + +P D Sbjct: 364 GNLLSKTNESREERELIFFITPYLVHSSVPIEKKQPTD 401 >gi|309778769|ref|ZP_07673542.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA] gi|308922477|gb|EFP68101.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA] Length = 454 Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 100/438 (22%), Positives = 181/438 (41%), Gaps = 41/438 (9%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 + + + AA ++ + E + + + +++ ++ + + +P A Sbjct: 4 AAMVRGWMGGLALGCAAFVSSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIA 63 Query: 78 DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 D ++ R ++ + K G ANV++ G ++ ++ + Sbjct: 64 DALLLKGRGTATSVLIIAKKPGAANVMVWTQGG-VATTYNVQVDAAAP---------VPG 113 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 + V DT V+ G + L+ S + + V++ ++ Sbjct: 114 -DPAVVAQGDTAVVSGQPKD------VYALARARRSAAAASGAEKPKDGNVIDTTSMNVP 166 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSE------G 242 V + V + E + +LK+ GF + PS FG +S G Sbjct: 167 GTVQVDVRVVEFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTESTMPIG 226 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F++ L LE R LAEP+L A+SGQSA+F +GG+ V + Sbjct: 227 SAFNLLVSSVSKGLFADLSLLESNGMARVLAEPSLVALSGQSANFLAGGEIPIP-VPQAL 285 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADT 358 G T++ +G+ L +PT+LS RI L++ E S+ + +N +P+ R+ADT Sbjct: 286 GTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADT 345 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TVEL G + V+ GL+ + +P L +P++G F+ +N+EE E+ I TP L Sbjct: 346 TVELGDGESFVIGGLVSRSTLSNVDKVPFLGDVPVIGTFFKRLNYNQEERELVIIVTPHL 405 Query: 419 VKPVAMRDLSRPDDHYSV 436 VKP+A P D Sbjct: 406 VKPMARNA---PIDKMLP 420 >gi|325518465|gb|EGC98164.1| pilus assembly protein [Burkholderia sp. TJI49] Length = 429 Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 106/445 (23%), Positives = 166/445 (37%), Gaps = 45/445 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100 I + + + +Q V V DP ADV++ + L K G NV+ Sbjct: 7 ASASGTIELAVGTQRQISAGRSLQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGATNVM 66 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + + + ++ + DS RV T VL G ++ +RA Sbjct: 67 LWERGRDEPTVWSVEV------VDAAAHAVLDDSTPRVNAYGGTAVLRGTSASLDAHERA 120 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V + + + + + K V+ + E R +LKQ+GF Sbjct: 121 VAVGKNMAGKGAVIDRSTLAGKNVVQVDVRVV-----------EFSRSVLKQVGFNFFKQ 169 Query: 221 GSSSGPSKSFAAD---------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + F++ L LE Sbjct: 170 SNGFSFGSFSPGGVQSYGGGSGPGTAGYIPTLGSPVASAFNLVVNAAGHGIFGDLSLLEA 229 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R LAEPTL A+SGQSASF +GG+ + G+T++ YG+ L TPTVLSP Sbjct: 230 NNLARVLAEPTLVALSGQSASFLAGGEIPFP-SPQGLGSTAIQWKQYGIGLSLTPTVLSP 288 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 289 QRIALKVAPESSQLDYVNSVTISGVSVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 348 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL +PI+G F+N + + + E+ I TP LV P+A + Sbjct: 349 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPAT-----PGELS 403 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 404 EQRDGPVWRSYLGGVASPDAAPGFS 428 >gi|221213139|ref|ZP_03586115.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD1] gi|221167352|gb|EED99822.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD1] Length = 443 Score = 240 bits (611), Expect = 6e-61, Method: Composition-based stats. Identities = 112/445 (25%), Positives = 173/445 (38%), Gaps = 45/445 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100 G I + + + +Q V V DP ADV++ + + K G NV+ Sbjct: 21 ASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVM 80 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + ++ + ++ + DS RV T VL G ++ +RA Sbjct: 81 LWERGRDEPTVWNVEV------VDAAAHAVLDDSTPRVNTYGGTSVLRGTAASLDAHERA 134 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217 V + + + + + K V+ + E R +LKQ+GF Sbjct: 135 VAVGKNVSGKGAVIDRSTLAGKNVVQVDVRVV-----------EFSRSVLKQVGFNFFKQ 183 Query: 218 --SITGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETVLHALER 265 + S P + + G S G F++ L LE Sbjct: 184 SNGFSFGSFSPGGVQSYNGGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEA 243 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R LAEPTL A+SGQSASF +GG+ G+T++ YGV L TPTVLSP Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTVLSP 302 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL +PI+G F+N + + + E+ I TP LV P+A Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPAT-----PGQLS 417 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 418 EQRDGPVWRSYLGGAASPDAAPGFS 442 >gi|221197781|ref|ZP_03570827.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD2M] gi|221204661|ref|ZP_03577678.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD2] gi|221175518|gb|EEE07948.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD2] gi|221181713|gb|EEE14114.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD2M] Length = 443 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 112/445 (25%), Positives = 173/445 (38%), Gaps = 45/445 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100 G I + + + +Q V V DP ADV++ + + K G NV+ Sbjct: 21 ASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVM 80 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + ++ + ++ + DS RV T VL G ++ +RA Sbjct: 81 LWERGRDEPTVWNVEV------VDAAAHAVLDDSTPRVNTYGGTSVLRGTAASLDAHERA 134 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217 V + + + + + K V+ + E R +LKQ+GF Sbjct: 135 VAVGKNVSGKGTVIDRSTLAGKNVVQVDVRVV-----------EFSRSVLKQVGFNFFKQ 183 Query: 218 --SITGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETVLHALER 265 + S P + + G S G F++ L LE Sbjct: 184 SNGFSFGSFSPGGVQSYNGGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEA 243 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R LAEPTL A+SGQSASF +GG+ G+T++ YGV L TPTVLSP Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTVLSP 302 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL +PI+G F+N + + + E+ I TP LV P+A Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPAT-----PGQLS 417 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 418 EQRDGPVWRSYLGGAASPDAAPGFS 442 >gi|116694140|ref|YP_728351.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16] gi|113528639|emb|CAJ94986.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16] Length = 470 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 91/417 (21%), Positives = 166/417 (39%), Gaps = 40/417 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR---TMYLF 90 A E +++ + ++ V+ V V +P AD +V R ++ L Sbjct: 33 ALAPRAQAQEAVNARQLRLLAGAQKEIRSAQPVERVAVGNPAVADALVLRTRGAPSVLLV 92 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 K G +V++ G + L ++ ++ + ++ + + G Sbjct: 93 AKQPGVTDVMVWTRGGAEPLTYNVQVDAIAPDAD----------GAKLGYSAAGATITGQ 142 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + +++ + V++ + V + V + E+ + +L Sbjct: 143 SPDAYAAA-----RAQAAARAATTGKTDGKPGLVVDRSTVPLSGTVQVDVKVVEISKTVL 197 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---------------- 254 K++G S + + G + Sbjct: 198 KEVGINFFRNNSGFAFGTFSPSTLNKFTFTPGSGGAPGSFSADIASPMSNAFNLVAASLT 257 Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + LE R LAEP+L A+SGQSASF +GG+ V + G T++ +G Sbjct: 258 HGIFANISLLEANGLARVLAEPSLVALSGQSASFLAGGEIPIP-VPQALGTTTIQFKPFG 316 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369 + L +PTVLS RI L++ E S+ +N +P+ R+ADTTVEL G + V Sbjct: 317 IGLTVSPTVLSADRIALKVAPEASDLDPSRGISINGAVVPAIVTRRADTTVELGDGESFV 376 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + GL+ + +P+L +P++GA F+N F++E+ E+ I TP LVKP+A Sbjct: 377 IGGLVSRNTVSNVNKVPVLGDLPVIGAFFKNLNFHQEDRELMIVVTPRLVKPLAKGA 433 >gi|163857691|ref|YP_001631989.1| putative Flp pilus assembly secretin [Bordetella petrii DSM 12804] gi|163261419|emb|CAP43721.1| putative Flp pilus assembly secretin [Bordetella petrii] Length = 464 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 109/478 (22%), Positives = 185/478 (38%), Gaps = 35/478 (7%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +++ + + ++ P + A + + IS+ + +L + Sbjct: 4 WMKPRMRASLLCTVLATAGVFYGAPVAGQ--ARPAEPAAAAPAASQDISLAVKGQQLLPL 61 Query: 63 PVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 P + V+DP ADV V P + L GK+ G V + + + + + Sbjct: 62 PGTPTRIAVADPDVADVKVLPAAAGRPAAVMLIGKSAGTTQVQVWARNSRSPATWTVHVT 121 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 + + L+R V++ V+ G + Q +V + + A Sbjct: 122 GPV---QAELQRRGQAGGANVDVAGTHAVVSGHAPSALSHQNSVAAAAASVGDKNVVDVA 178 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----AD 233 + S V+ + E R ++KQ+G + G + + Sbjct: 179 TAGSGGVVQVEVKVVEV-----------SRSVMKQVGLSMTGNAGGWGFGSRTSPDGFST 227 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G + D F L L+ R LAEPTL A+SGQSASF +GG+ Sbjct: 228 PGTLNPRGVLSDGFNLLFDSNHFGATLRMLQSNGMARVLAEPTLVALSGQSASFLAGGEI 287 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--------IGVNA 345 G +V +G+ L TPTVLS RI L++ E SE G A Sbjct: 288 PIPES-GGLGTQNVVFKPFGIGLTVTPTVLSRDRIALKVAPEASELDYVNGIPILNGETA 346 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ R R+ADT +EL G + V++GL+ + +P L ++PI+GA FR +++ Sbjct: 347 TLIPALRTRRADTMIELGDGESFVISGLVSRQTKASVNKVPFLGELPIIGAFFRGIEYSQ 406 Query: 406 EETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 EE E+ I TP LV+P+A L P + D + + G ++ Sbjct: 407 EEHELVIVVTPRLVRPIARGVALPLPGERQERPDSITNAWGYYLMGPAGGQQVPGFSR 464 >gi|283778969|ref|YP_003369724.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283437422|gb|ADB15864.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 684 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 105/510 (20%), Positives = 186/510 (36%), Gaps = 63/510 (12%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82 +A P E + +I + + L + IL + + + D + A V Sbjct: 138 MANPVPTAEVSQRFDRFIQRKIDPENTLEVILGRPRILVFNETPKRIYLPDESIAAFQVI 197 Query: 83 SPRTMYLFGKNVGQANVILI---GHDGKQMLNLDILIERDIAHLEMTL-----------R 128 R + + G++VG + L GK+++ ++ L+ L Sbjct: 198 DDRQISIVGRSVGSTALNLWVIDPETGKEIVLSYLVKVLPEPQLKERLEAVYAGLEREIN 257 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS--------- 179 + S I++ ++ D + + G ++ + +++ ++++ Sbjct: 258 QAFPRSKIQLSLIGDQLAVRGQAHDAVEANQILQIVARHSPTKSQDEFGRPVQYVQQAAF 317 Query: 180 --------------------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + ++NLL I GE QV L+VT+AEV R + I Sbjct: 318 IDQQRDPLVDQDQAFLRQTVVDSALLARSGIINLLQIPGEQQVMLRVTVAEVNRTAARSI 377 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S+ ++ G + G +V LD ++AL +TLA Sbjct: 378 GLNFSVQ-NNQGTTVFQNLTGQLGAAGGGNLSNVLASLDNGQVILAINALRSLRLAKTLA 436 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLR 331 EP LT ++GQ A+F +GG + G +GV + FTP V+ RI L+ Sbjct: 437 EPNLTTLNGQQATFRAGGSFPVPQIGGLGGTGLQGTVFVPFGVSIEFTPYVIDRDRIRLK 496 Query: 332 IQTEVSEPVIGVNA----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + VS + + R D+TVEL G T+ +AGL++ ++ Sbjct: 497 LSAGVSVRDESLGTSIGGSAGAGGTQVAGLNSRTFDSTVELREGQTLAVAGLIQTNMGAD 556 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSVEDDA 440 + +P +PI+G SR E E+ I TP LV P+ D P D Sbjct: 557 SDRVPFWGDLPIIGHTGGFSRTTAGEQELVILVTPELVHPLEACDTPSLPGADVFETGDI 616 Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 + + N + S V + G Sbjct: 617 EFYLGNHLEARRMRDYRSTVRTDFARIRAG 646 >gi|91775995|ref|YP_545751.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91709982|gb|ABE49910.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 453 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 104/425 (24%), Positives = 181/425 (42%), Gaps = 40/425 (9%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 ++I + + + + + V +Q V V++P V + SP+TM + K VG + L Sbjct: 27 AEEIMVSMGQQRLYEHTVTLQRVAVANPEVLAVTLTSPKTMMIVPKAVGATEISLWDSQS 86 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 Q + + LE + + ++VE + + L G R++++ RA+E + Sbjct: 87 VQPSRVLQVSVTPSLALEGQGLKAADAAGLQVEAAGNGLALSGEARSLEEHARALESLQK 146 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--- 223 + + S V + + + EV R + GF S+ Sbjct: 147 ERQGALDVTSSEFDSH-------------VQIDIKVVEVSRQNAMRFGFLMGKNNSASRD 193 Query: 224 --------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 S F F+ F+V L LE Sbjct: 194 GFGIVASPNSFSGVEAGSGGFDFSSTSGFLPVLNAFNVVFGNHGSGLLGTLSILEGNGFA 253 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGR 327 TLAEP+L+AISGQ+A+F +GG+ + +++T +YGV L TPT+LS R Sbjct: 254 YTLAEPSLSAISGQTATFLAGGEFPVPIRTGGGSDSAITIRYKEYGVRLMLTPTILSGER 313 Query: 328 IGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 I L++ EVSE + +P +VR+ +T+V L +G + V++G++ + + Sbjct: 314 IFLKVAPEVSELDFANAVQTGGVAVPGLKVRRTETSVSLGNGESFVISGMVSRNTINNID 373 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDD 439 +P L IPI+GA F + RF+RE+ E+ + TP LV+P+A + P Sbjct: 374 KVPGLGNIPIIGAFFSSKRFDREDKELLMVVTPRLVRPIARNAELPALPGSELKHYKPSF 433 Query: 440 AKAFF 444 ++ F Sbjct: 434 SEFFL 438 >gi|238762407|ref|ZP_04623378.1| Type II/III secretion system protein [Yersinia kristensenii ATCC 33638] gi|238699392|gb|EEP92138.1| Type II/III secretion system protein [Yersinia kristensenii ATCC 33638] Length = 379 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 171/372 (45%), Gaps = 25/372 (6%) Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141 ++ ++ K G A IL + + + +L+ I ++ +S+I + + Sbjct: 1 MGKNSIIVYAKQEGTAEFILFNQNNQPIKKSAVLVNNTITAANKRIQIEYPESDIEINKI 60 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQV 196 + +L GM + + V + + + ++N + + G +QV Sbjct: 61 GTSYILTGMAESEEAKDTIVSIIGEAIGSKKTIDTDSQYLNTPEYYGIINKIKLMGTNQV 120 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 +K+TIAEV +D + IG S G SG + + F + G Sbjct: 121 NVKLTIAEVTKDFSENIGVDWSTIGDFSGSFQLVKLNSLNNFSARG-------------I 167 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 ++HA+ + R LAEP L+ +SG+SASF GG+ V+++ +T +T ++G+ L Sbjct: 168 SALVHAINDDSIARVLAEPNLSVLSGESASFLVGGEIPM--VNTTQNSTVITYKEFGIKL 225 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + V RI + + EVS PS+R RKA TT+EL G + +L GL Sbjct: 226 NIGAKVNEKKRIRIMLDEEVSSIDKVFNIDGGNAYPSFRTRKAATTLELGDGESFILGGL 285 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 + + ++ + IP + IPILGA FRN+ + +TE+ + AT LV+PV+ R++ P + Sbjct: 286 ISNSERESLKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRPVSEREVELP--N 343 Query: 434 YSVEDDAKAFFF 445 + + FF Sbjct: 344 FMHTSTLERFFN 355 >gi|187923645|ref|YP_001895287.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] gi|187714839|gb|ACD16063.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] Length = 468 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 111/469 (23%), Positives = 186/469 (39%), Gaps = 41/469 (8%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 S+ A +A A + I + + + V +Q V + DP+ Sbjct: 21 VSAATDAAGPAQRAQAAPAAQPHQAAFAPPAQGIDLTVGAQRQIAVGHTLQRVAIGDPSV 80 Query: 77 ADVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 ADV++ + L GK G N++L D L + + A + Sbjct: 81 ADVLIIKGDKRGGVLLVGKAAGTTNLMLWSRDRDAPLQYTVNVTTPAAA------SLLGA 134 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 V+++ T ++ G T++ QRAV +E L + G ++ + + + +++ Sbjct: 135 DTPAVKVLGGTAIVSGTSATMEAHQRAVVAAEGSLGKDGAVFDTSTVASRAVVQVDVRVV 194 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------- 242 E R +LK++GF + + + G Sbjct: 195 ----------EFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAGQAPSLTGVTPI 244 Query: 243 -GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 F++ L LE R LAEPTL A+SGQSASF +GG+ V + Sbjct: 245 SSAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLAGGEVPIP-VPQA 303 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKAD 357 G+TS+ YGV L TPTVLSP RI L++ E S+ + ++ +P++ R+AD Sbjct: 304 LGSTSIEFKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAFTTRRAD 363 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTVEL G + V+ GL+ + +PLL +P++G F+ + + E E+ I TP Sbjct: 364 TTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQNEKELVIIVTPH 423 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 LV P+A + V + A+ + Sbjct: 424 LVSPLARGATLPST-----PGEQSEQRNGPVWRSLIGGVAARDASPGFS 467 >gi|296158794|ref|ZP_06841623.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] gi|295890999|gb|EFG70788.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] Length = 474 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 115/485 (23%), Positives = 195/485 (40%), Gaps = 49/485 (10%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGK--------KISIGLNKVIIL 60 + + L + + + P AA + + +I++ + L Sbjct: 11 AAWLGVALLAVSAATDAAGPAPRGQAAQAAQAAQAAQAAQPALAAPAQRIALTVGAQQQL 70 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 V +Q V + DP+ ADV++ + L GK G N++L D L + + Sbjct: 71 AVGHTLQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVT 130 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 A + V+++ T V+ G T++ QRAV +E L + G Sbjct: 131 TPAAA------SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDGAVFDT 184 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 ++ + + + +++ E R +LK++GF + + Sbjct: 185 STVASRAVVQVDVRVV----------EFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSV 234 Query: 238 FVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + G F++ L LE R LAEPTL A+SGQSA Sbjct: 235 SATAGQAPSMTGVTPISSAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSA 294 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----I 341 SF +GG+ V + G+TS+ YG+ L TPTVLSP RI L++ E S+ + Sbjct: 295 SFLAGGEVPIP-VPQALGSTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAV 353 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 ++ +P++ R+ADTTVEL G + V+ GL+ + +PLL +P++G F+ Sbjct: 354 TISGVSVPAFITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQL 413 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + + E E+ I TP LV P+A S P S + V + A+ Sbjct: 414 NYQQNEKELVIIVTPHLVSPLAKGA-SLP----STPGEQSEQRNGPVWRSLIGGVAARDS 468 Query: 462 GQNYK 466 + Sbjct: 469 SPGFS 473 >gi|167570105|ref|ZP_02362979.1| type II/III secretion system protein [Burkholderia oklahomensis C6786] Length = 434 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 110/449 (24%), Positives = 174/449 (38%), Gaps = 40/449 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93 V+ + I + + V +VQ V V DP ADV+V + L K Sbjct: 7 VLLSFAARAAEMGTIELATGAQRQVSVGRNVQRVAVGDPNVADVLVVKGGRGSVLLVAKA 66 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G ++++ + + + A R + + V+ T V+ G T Sbjct: 67 AGSTSLMVWERGRDEPAVYTVNVVSGAA------RALLDGGSPSVKAYGGTAVVSGSAAT 120 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + RA+ L + + G A++ K + +++ E R +LKQ Sbjct: 121 LDAHARALALGKGMAGKDGGVVDASTVGGKNVVQVDVRVV----------EFSRSVLKQA 170 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLH 261 G + + F++ L Sbjct: 171 GLNFFKQNNGFTFGAFAPSGLASVTGGATPSMSVSANIPISSAFNLVVGSATRGLFADLS 230 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT Sbjct: 231 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 289 Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ + Sbjct: 290 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRE 349 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +P L +PI+G F++ + + + E+ I TP LV P+A S P + Sbjct: 350 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 404 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + V + Y S G + Sbjct: 405 GELSEQRDGPVWRSYLGGALSPDAGPGFS 433 >gi|171317113|ref|ZP_02906316.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] gi|171097747|gb|EDT42574.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] Length = 443 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 107/450 (23%), Positives = 169/450 (37%), Gaps = 45/450 (10%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVG 95 I + + + +Q V V DP ADV++ + L K G Sbjct: 16 TVASLASASGTIELAVGAQRQISAGRTLQRVAVGDPAVADVLIMKGSRSGSVLLTAKAPG 75 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 NV+L + + + ++ + + S RV T VL G ++ Sbjct: 76 ATNVMLWARGRDEPTVWSVEV------VDAAAQAVLDGSTPRVNAYGGTAVLQGTAASLD 129 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 RA + S+ V++ + G++ V + V + E R +LKQ+GF Sbjct: 130 AHARASAV-----------GKNMSAKGNVIDRSTVVGKNVVQVDVRVVEFSRSVLKQVGF 178 Query: 216 QHSITGSSSGPSKSFAADF---------------GGKFVSEGGDFSVKGVLDRFSFETVL 260 + F++ L Sbjct: 179 NFFKQSNGFSFGSFSPGGVQSYSGGAGPGTGGYVPTLGSPVASAFNLVVNAAGRGIFADL 238 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 LE R LAEPTL A+SGQSASF +GG+ G+T++ YGV L TP Sbjct: 239 SLLEANNLARVLAEPTLVALSGQSASFLAGGEIPVP-APQGLGSTAIQWKQYGVGLTLTP 297 Query: 321 TVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TVL+P RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 298 TVLNPNRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDR 357 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 +PLL +PI+G F+N + + + E+ I TP LV P+A + Sbjct: 358 QTMSNVSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVAPIAKGAVLPAT----- 412 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + V + Y AS + Sbjct: 413 PGELSEQRDGPVWRSYLGGVASPDAAPGFS 442 >gi|167562915|ref|ZP_02355831.1| type II/III secretion system protein [Burkholderia oklahomensis EO147] Length = 432 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 110/449 (24%), Positives = 174/449 (38%), Gaps = 40/449 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93 V+ + I + + V +VQ V V DP ADV+V + L K Sbjct: 5 VLLSFAARAAEMGTIELATGAQRQVSVGRNVQRVAVGDPNVADVLVVKGGRGSVLLVAKA 64 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G ++++ + + + A R + + V+ T V+ G T Sbjct: 65 AGSTSLMVWERGRDEPAVYTVNVVSGAA------RALLDGGSPSVKAYGGTAVVSGSAAT 118 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + RA+ L + + G A++ K + +++ E R +LKQ Sbjct: 119 LDAHARALALGKGMAGKDGGVVDASTVGGKNVVQVDVRVV----------EFSRSVLKQA 168 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLH 261 G + + F++ L Sbjct: 169 GLNFFKQNNGFTFGAFAPSGLASVTGGATPSMSVSANIPISSAFNLVVGSATRGLFADLS 228 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT Sbjct: 229 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 287 Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ + Sbjct: 288 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRE 347 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +P L +PI+G F++ + + + E+ I TP LV P+A S P + Sbjct: 348 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 402 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + V + Y S G + Sbjct: 403 GELSEQRDGPVWRSYLGGALSPDAGPGFS 431 >gi|254245567|ref|ZP_04938888.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia PC184] gi|124870343|gb|EAY62059.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia PC184] Length = 443 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 107/445 (24%), Positives = 170/445 (38%), Gaps = 45/445 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100 I + + + +Q V V DP ADV++ + L K G NV+ Sbjct: 21 ASASATIELAVGAQRQISAGRTLQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGATNVM 80 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + ++ + ++ + + + RV T VL G +++ RA Sbjct: 81 LWERGRDEPTIWNVEV------VDAAAQAVLDGAAPRVNAYGGTAVLQGSAASLEAHSRA 134 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + + V++ + G+ V + V + E R +LKQ+GF Sbjct: 135 AAVGKNMSGKGV-----------VIDRSTVPGKSVVQVDVRVVEFSRSVLKQVGFNFFKQ 183 Query: 221 GSSSGPSKSFAADF---------------GGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + F++ L LE Sbjct: 184 SNGFSFGSFSPGGVQSYSGGSGPGTGGYVPTLGSPVASAFNLVVNAAGRGIFADLSLLEA 243 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R LAEPTL A+SGQSASF +GG+ G+T++ YGV L TPTVLSP Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTVLSP 302 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 303 SRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL +PI+G F+N + + + E+ I TP LV P+A + + Sbjct: 363 VSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PGELS 417 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466 V K Y AS + Sbjct: 418 EQRDGPVWKSYLGGAASPDAAPGFS 442 >gi|156975620|ref|YP_001446527.1| Flp pilus assembly protein secretin [Vibrio harveyi ATCC BAA-1116] gi|156527214|gb|ABU72300.1| hypothetical protein VIBHAR_03353 [Vibrio harveyi ATCC BAA-1116] Length = 449 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 112/405 (27%), Positives = 187/405 (46%), Gaps = 47/405 (11%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 I ++ ++V + V VSDP D V + T+ +F K VGQA I+ G K +L+ Sbjct: 28 ITVSDGQHIEVKEPISTVFVSDPEIVDYNVVNENTVVVFAKEVGQARFIIYGKSKKVLLS 87 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 I+++ D++ + ++ + NI+VE V + V + G+V + Q + T L + Sbjct: 88 DRIIVDIDLSLVRRQIKLHYPELNIKVESVGNQVAVSGVVESEQQRDDIYRMVATLLGRD 147 Query: 172 GRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVRR 207 ++ + + ++ L+ +A + QV +K+++A+V Sbjct: 148 KTEKWEETQVLEFENEAYDIEEPQSMIFARNMTWEGILELIEVATDQQVNVKISVAQVTE 207 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + +G S G+ G + D T++ AL Sbjct: 208 TFSQTVGVDWSSVGADVGEF-------------------LFQQFDAADLTTLITALGNEN 248 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + LAEP LT ISG+SASF GG+ + ++T ++G+ L T VL G+ Sbjct: 249 VAQVLAEPNLTVISGESASFLVGGEVPVIVT--TNNNINITFREFGIKLDLTAKVLHEGK 306 Query: 328 IGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I +R+ EVSE I ++P + R+A TT+EL G + VL GL+ + + I Sbjct: 307 IRMRLMPEVSEVERYIRSAGLEVPQFATRRAMTTIELGDGDSFVLGGLMSSADLEELKKI 366 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 PLL IP+LGA FR + +R TE+ I AT LVKP+ +D+ P Sbjct: 367 PLLGDIPVLGAAFRKASTDRRRTELIIVATVNLVKPMKKKDIQMP 411 >gi|115351456|ref|YP_773295.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] gi|115281444|gb|ABI86961.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] Length = 444 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 102/447 (22%), Positives = 176/447 (39%), Gaps = 41/447 (9%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH---SPRTMYLFGKNVG 95 + G I + + + +Q + V DP DV+V ++ L K G Sbjct: 19 VLTEAAGTNASIDLAVGSQRQVAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPG 78 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 NV+L + ++ ++ + + S +V+ VL G ++ Sbjct: 79 STNVLLWERGRDEPTVWNV------NVVDAAAQAALDGSAPKVKGYGGAAVLSGSSASLD 132 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 +RAV + + + G A++ + + +++ E R +LK+ G Sbjct: 133 AHERAVAVGKRMGGKDGTVIDASTVGNRSVVQVDVRVV----------EFSRSVLKEAGL 182 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLHAL 263 + F+ G + + L Sbjct: 183 NFFKQSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNISIL 242 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E R LA+PTL A+SGQSASF +GG+ V + G+T++ YGV L TPTVL Sbjct: 243 EANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIDWKQYGVGLTLTPTVL 301 Query: 324 SPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 S RI L++ E S+ + +N+ +P+ R+ADTTVEL G + V+ GL+ + Sbjct: 302 SQHRIALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRETM 361 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 +P+L +PI+GA F++ + + + E+ I TP LV P+A P + + Sbjct: 362 SNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVAPIAKGA-PLP----ATPGE 416 Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 417 LSEQRDGPVWRSYLGGIASPDAAPGFS 443 >gi|83718419|ref|YP_443059.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|167582062|ref|ZP_02374936.1| type II/III secretion system protein [Burkholderia thailandensis TXDOH] gi|167620224|ref|ZP_02388855.1| type II/III secretion system protein [Burkholderia thailandensis Bt4] gi|257139289|ref|ZP_05587551.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|83652244|gb|ABC36307.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 441 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 112/449 (24%), Positives = 175/449 (38%), Gaps = 40/449 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93 V+ + I + + V VQ V + DP+ ADVVV + L K Sbjct: 14 VLLSFAARAAEMGTIELATGAQRQIAVGRGVQRVAIGDPSVADVVVIKGGRGGVLLVAKA 73 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G N+++ + + + A R + + V+ + T V+ G T Sbjct: 74 AGSTNLMVWERGRDEPSVYTVNVASGAA------RALLDGGSPSVKAYNGTAVVSGSAAT 127 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + RA+ + + + G A++ K + +++ E R +LKQ Sbjct: 128 LDAHARALAVGKGMAGKDGGVVDASTVGGKNVVQVDVRVV----------EFSRSVLKQA 177 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261 G + A SV + L Sbjct: 178 GLNFFKQSNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 237 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT Sbjct: 238 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 296 Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ + Sbjct: 297 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRE 356 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +P L +PI+G F++ + + + E+ I TP LV P+A S P + Sbjct: 357 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 411 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + V + Y S G + Sbjct: 412 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 440 >gi|299069498|emb|CBJ40767.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum CMR15] Length = 467 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 91/438 (20%), Positives = 171/438 (39%), Gaps = 40/438 (9%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 ++ A + G+ + + +++ ++ + + +P A Sbjct: 17 AAVVRGWMGALALGWVALAPAAHAQGMPAGQVLHLLSGSQREIRLGKPLERIAIGNPEVA 76 Query: 78 DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 D ++ ++ + K G AN+++ G + + Sbjct: 77 DALLLKGHGAAGSLLIIAKKPGAANILVWTQGGTALTYNVQVDAEPRGA----------- 125 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 + + + T VL G V+ L+ S + +++ +A Sbjct: 126 GSPDLAVQGSTAVLTGQVKD------VYSLARARKSAAVAGGAEPPKGGNMIDNTTLAVP 179 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 V + V + E + +LK+ GF + T + V+ + Sbjct: 180 GTVQVDVRVVEFSKTVLKEAGFIFTRTRGGFTFGSFSPSTLTQYTVTPTSLTTQSTTPIG 239 Query: 254 FSFETVLH-----------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 +F ++ +E R LAEP+L A+SGQSA+F +GG+ V + Sbjct: 240 TAFNLLISSFSKGIFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQAL 298 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADT 358 G T++ +G+ L +PT+LS RI L++ E S+ + +N +P+ R+ADT Sbjct: 299 GTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADT 358 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TVEL G + V+ GL+ + +P L +PI+G F+ +N+EE E+ I TP L Sbjct: 359 TVELGDGESFVIGGLVSRTTLSNVDKVPFLGDVPIIGTFFKRLDYNQEERELVIIVTPRL 418 Query: 419 VKPVAMRDLSRPDDHYSV 436 V+P+A P D Sbjct: 419 VRPMARNA---PIDKMLP 433 >gi|170701752|ref|ZP_02892688.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] gi|170133335|gb|EDT01727.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] Length = 444 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 101/447 (22%), Positives = 176/447 (39%), Gaps = 41/447 (9%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH---SPRTMYLFGKNVG 95 + G I + + + +Q + V DP DV+V ++ L K G Sbjct: 19 VLTEAAGTNASIDLAVGSQRQIAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPG 78 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 NV+L + ++ ++ + + + +V+ VL G ++ Sbjct: 79 STNVLLWERGRDEPTVWNV------NVVDAAAQAALDGTGPKVKAYGGAAVLSGSSASLD 132 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 +RAV + + + G A++ + + +++ E R +LK+ G Sbjct: 133 AHERAVAVGKRMGGKDGTVIDASTVGNRSVVQVDVRVV----------EFSRSVLKEAGL 182 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLHAL 263 + F+ G + + L Sbjct: 183 NFFKQSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNISIL 242 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E R LA+PTL A+SGQSASF +GG+ V + G+T++ YGV L TPTVL Sbjct: 243 EANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIDWKQYGVGLTLTPTVL 301 Query: 324 SPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 S RI L++ E S+ + +N+ +P+ R+ADTTVEL G + V+ GL+ + Sbjct: 302 SQRRIALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRETM 361 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 +P+L +PI+GA F++ + + + E+ I TP LV P+A P + + Sbjct: 362 SNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVAPIAKGA-PLP----ATPGE 416 Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 417 LSEQRDGPVWRSYLGGIASPDAAPGFS 443 >gi|312882144|ref|ZP_07741893.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122] gi|309370190|gb|EFP97693.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122] Length = 456 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 105/437 (24%), Positives = 188/437 (43%), Gaps = 63/437 (14%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN +QV + + V +S+P AD V + T+ ++ VGQ+ +I+ G D +L Sbjct: 34 SITLNDGQHIQVNMPIGKVFISNPEVADYKVINENTLVVYANEVGQSRLIVYGTDSSVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ +++ + L+ D ++V+ + V + G+V + + L T L + Sbjct: 94 SDRIVVDLNLSEVRRQLKFHYPDVQVKVQSIGTQVAVSGVVDSEETRDDIYRLVATLLGR 153 Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ + ++ + + QV +K++IA V Sbjct: 154 EKTEKWNQVEKLTFESENTRYEEPESMVFARNMTWEGIIERIKVTTTQQVNVKISIAHVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +G G+ G V + + T++ AL Sbjct: 214 ESFGQTVGIDWGSIGARVGSF-------------------VFDQFNAANLGTIISALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP LT +SG+SASF +GG+ + + +V+ +G+ L+ T VLS Sbjct: 255 EIAQVLAEPNLTVLSGESASFLAGGEVPVIVL--NDRNLTVSFKQFGIGLNLTAKVLSRD 312 Query: 327 RIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I +++ VSE V +P + +RKA TTVEL G + +L GL+ + + Sbjct: 313 KIQMQLAPSVSEVEGFVEFEGLKVPQFTLRKALTTVELSDGDSFILGGLMSSADFEEMQK 372 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP-------------- 430 +P++ IP+ GA FR ++ R+ TE+ I AT LV+PV D+ P Sbjct: 373 VPVIGDIPLFGAAFRKAKTERKRTELIIVATVNLVEPVRPNDIQVPYINKTSTLERWLNI 432 Query: 431 --DDHYSVEDDAKAFFF 445 DD + DA Sbjct: 433 NSDDSFQPSSDATIRLL 449 >gi|91783011|ref|YP_558217.1| putative outer membrane channel signal peptide protein, CpaC like [Burkholderia xenovorans LB400] gi|91686965|gb|ABE30165.1| Putative outer membrane channel signal peptide protein, CpaC like protein [Burkholderia xenovorans LB400] Length = 454 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 111/475 (23%), Positives = 191/475 (40%), Gaps = 41/475 (8%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 M+++ + A+ +A A ++I++ + L V +Q + Sbjct: 1 MLAVSAATDAAGPAQRGQAAQAAQAAQAAQPTLAAPAQRIALTVGAQQQLAVGHTLQRIA 60 Query: 71 VSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 + DP+ ADV++ + L GK G N++L D L + + A Sbjct: 61 IGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVTTPAAA----- 115 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + V+++ T V+ G T++ QRAV +E L + G ++ + + + Sbjct: 116 -SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDGAVFDTSTVASRAVVQ 174 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----- 242 +++ E R +LK++GF + + + G Sbjct: 175 VDVRVV----------EFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAGQAPSM 224 Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 F++ L LE R LAEPTL A+SGQSASF +GG+ Sbjct: 225 TGVTPISSAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLAGGEVPI 284 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSY 351 V + G TS+ YG+ L TPTVLSP RI L++ E S+ + ++ +P++ Sbjct: 285 P-VPQALGTTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAF 343 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ADTTVEL G + V+ GL+ + +PLL +P++G F+ + + E E+ Sbjct: 344 ITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQNEKELV 403 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 I TP LV P+A + V + A+ + Sbjct: 404 IIVTPHLVSPLAKGATLPST-----PGEQSEQRNGPVWRSLIGGVAARDSAPGFS 453 >gi|332284569|ref|YP_004416480.1| putative outer membrane protein [Pusillimonas sp. T7-7] gi|330428522|gb|AEC19856.1| putative outer membrane protein [Pusillimonas sp. T7-7] Length = 474 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 109/470 (23%), Positives = 189/470 (40%), Gaps = 45/470 (9%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L +A+ + A+ +++ + +V +L +P DV V V D Sbjct: 6 ILLGCLLMMAQHSGAAPSQEAM-------------LNLQVGEVKVLGIP-DVARVAVGDG 51 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD- 133 + V + + +F ++ G + + DG++ + + ++ LR + Sbjct: 52 HIINAVATDEKEVIVFARHEGSTALQIWSADGQRWQYQIEVAPEGLRQIQQELRSVLERI 111 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 + ++ V D +V+ G + D +R EL++ + + + Sbjct: 112 PHAQLSAVGDKLVIEGDDLSDGDRERIAELAKHYPQLLDFTG-------------QVGWD 158 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-----------KFVSEG 242 V L V + EV R L+++G + + + G S A D G + Sbjct: 159 RMVLLDVQVVEVPRIQLQELGLRWNT-ATDGGLSAGLAWDGGSKRLDDRPSESVMPIGFP 217 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + ++A+ + LA+P L A SG +A F +GG+ Y TV + Sbjct: 218 ATMAAGYFGVNALLSARINAMAQKGTAVVLAQPQLLARSGSTAEFLAGGEVPYSTV-DAN 276 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 G T+ YGV L TP + G + RI+ EVS ++ + PS + R+A T + Sbjct: 277 GNTNTAFKPYGVSLRITPQIERNGAVRSRIEVEVSSVDNALSVPNGPSLKTRRAATEFNV 336 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV--- 419 SG T+VLAG L + + +P L IPILG LF++SRF R ETE+ I TP LV Sbjct: 337 RSGQTLVLAGFLSREATHNVDKVPGLGDIPILGELFKSSRFQRHETELAIFVTPVLVGAD 396 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP-KEASEVEGQNYKGA 468 P R + +D + + P A +V ++G Sbjct: 397 HPGLARRVQLGEDILKTAFPQAPIINASLAPLPKPLVAADQVSWDPWQGP 446 >gi|152989020|ref|YP_001350207.1| putative type II secretion system protein [Pseudomonas aeruginosa PA7] gi|150964178|gb|ABR86203.1| probable type II secretion system protein [Pseudomonas aeruginosa PA7] Length = 408 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 92/434 (21%), Positives = 170/434 (39%), Gaps = 71/434 (16%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 + +A+ + + ++S+ + L++ V ++ + + DP ADV + ++ + Sbjct: 15 QPASALPQGCLELLAQAPQVSVAQGQQNDLRLAVPIKRLAIGDPQIADVQLLDRSSLLVT 74 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 GK G ++++ + L + +E G Sbjct: 75 GKEQGSTSLLIWTACSAEPLRSQVAVEG-----------------------------RGS 105 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V T ++ +QV + EV R L Sbjct: 106 VDTAAAPALGAGGADEL-------------------------PNQVQTDIRFVEVSRSKL 140 Query: 211 KQIGFQHSITGSSSGPSKSFAA---------DFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 KQ G + + + G G + + + ++ Sbjct: 141 KQASTSFVRRGGNLWVLGAPGSLGDIKVNADGSGLGGTFGAGASGFNLIFGGGKWLSFMN 200 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 ALE + TLA P+L A+SGQSASF +GG+ + + ++ ++G+ L TPT Sbjct: 201 ALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPT 260 Query: 322 VLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 V++ RI L++ EVSE I +P+ RVR+ DT+V L G + V++GL + Sbjct: 261 VMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSN 320 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS 435 + P L IPILGA FR+++ ++++ E+ + TP LV+P+A P + Sbjct: 321 SVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPGLPGEGLR 380 Query: 436 --VEDDAKAFFFNR 447 ++ +F R Sbjct: 381 HYDPGFSRLYFLER 394 >gi|149173675|ref|ZP_01852304.1| probable type II secretion system protein [Planctomyces maris DSM 8797] gi|148847205|gb|EDL61539.1| probable type II secretion system protein [Planctomyces maris DSM 8797] Length = 744 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 105/477 (22%), Positives = 195/477 (40%), Gaps = 52/477 (10%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 + G ++ I + + ++ ++ ++DP+ + V +SP + + G + Sbjct: 134 PLPTQIRSTPGIFDEMEIIIRRSQLIITNSRIRRYAIADPSIIEFVTYSPTEISIVGLEL 193 Query: 95 GQANVILIGHDGKQMLNLDILIERDIA----------HLEMTLRRFIADSNIRVEMVSDT 144 G + L + + +D + LE + +S + + +S Sbjct: 194 GTTTLTLWFEGDDTPITYLVHTIQDPSLEGQRRIDYGKLERKIAVLFPNSKVYLIPLSRK 253 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS------------------------- 179 +++ G ++ + + + N Sbjct: 254 IIVKGEASDATEAANILSVIRGEVINYEGNLGGPQPYGAGGAYGGGYGAAGGVLDGIGNN 313 Query: 180 --SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 +S ++N+L I GE QV + VTIA++ R +++Q+G S+ G + + GG Sbjct: 314 GYASSFIVNMLEIPGEFQVMIHVTIAQMNRTMMRQLGVDLSVLFD--GGRQFLGSSMGGV 371 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LY 295 + + G+ + +++AL + + +A PTLT +SG SASF +GG+ Sbjct: 372 PST------LTGIFEAGEVNVLINALAQNGTTKIMARPTLTVLSGHSASFLAGGEFAVPT 425 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 TS T +G + TP V+ I +RI E S+ G + +P R+ Sbjct: 426 IVGVGGAQGTSTTFRGFGTSIVVTPIVIDKDLIRMRIVPEYSQINDGNSVQGIPGLNSRR 485 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAA 414 A TTVEL G TIVLAGL D IP L +IP++G LF + + ++ E+E+ I Sbjct: 486 AQTTVELREGQTIVLAGLFGHDSSTGVTRIPWLGEIPLVGSYLFSSKQSSQGESELLITV 545 Query: 415 TPFLVKPVAMRDL-SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 TP LV+P+ ++ P +V D + + + G + + + Q Y G Sbjct: 546 TPQLVRPMEEDEVPPYPGFEVTVPQDKELY---KYAMTEGAPDTAVYQLQPYGRGAG 599 >gi|293606490|ref|ZP_06688848.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553] gi|292815113|gb|EFF74236.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553] Length = 458 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 107/479 (22%), Positives = 188/479 (39%), Gaps = 41/479 (8%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 ++R T M L ++ + + + A N + I++ + L + Sbjct: 1 MKRYQRTTMICVLSAAVAMTYGVVSLAQTTAPGAN------AAARDIAVAVKGQQSLMLD 54 Query: 64 VDV-QDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 + + DP ADV + ++ L+GK G + + + ++ + Sbjct: 55 GAAPSRIAIGDPEVADVKILPASGKRAGSLLLYGKKAGTTQLQIWTGNNPTPQIWNVRV- 113 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 ++ L V++ D VL G T A + + + + Sbjct: 114 --AGSVQAALASRGIQGGPNVDIAGDKAVLSGNAETPLAQIAAAQAAAAAVGDKNVVDVS 171 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + + V+ + E R ++KQ G + + + + A G Sbjct: 172 TAGAGGVVQVEVKVVEV-----------SRSVMKQAGINFAASNGPWAGTSATAPSGLGA 220 Query: 238 FVSEGGDFSVKGVL----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + + D +F L L+ R LAEPTL A++GQSASF +GG+ Sbjct: 221 PLGFTPGGIIASGFSLFYDSNNFSARLRLLQSNGMARVLAEPTLVALTGQSASFLAGGEL 280 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVN 344 G T+VT +G+ L TPTVLS RI L++ E SE Sbjct: 281 PIPEA-GGLGTTTVTFKPFGIGLTVTPTVLSRDRISLKVAPEASELDYSNGIAINTSADT 339 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 + +P+ R R+ADTTVEL G + V++GL+ + + +P+L +PI+GA FR+ ++ Sbjct: 340 STIIPALRTRRADTTVELGDGESFVISGLVSRQTKAMVNKVPMLGDLPIIGAFFRSVDYS 399 Query: 405 REETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 +E+TE+ I TP LV+P+A L P D + + G ++ Sbjct: 400 QEDTELVIVVTPRLVRPIARGVTLPLPGGRQEAADSTFNAWGYYLMGPVGGQQMPGFSR 458 >gi|167911136|ref|ZP_02498227.1| type II/III secretion system protein [Burkholderia pseudomallei 112] Length = 432 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 109/449 (24%), Positives = 174/449 (38%), Gaps = 40/449 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93 V+ + I + + V VQ V ++DP ADV+V + L K Sbjct: 5 VLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKA 64 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G ++++ + + + A R + + V+ + T V+ G T Sbjct: 65 AGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVAGSAAT 118 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + RA+ + + + G ++ K + +++ E R +LKQ Sbjct: 119 LDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVV----------EFSRSVLKQA 168 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261 G + A SV + L Sbjct: 169 GLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 228 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT Sbjct: 229 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 287 Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ + Sbjct: 288 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRE 347 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +P L +PI+G F++ + + + E+ I TP LV P+A S P + Sbjct: 348 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 402 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + V + Y S G + Sbjct: 403 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 431 >gi|78486068|ref|YP_391993.1| type II and III secretion system protein [Thiomicrospira crunogena XCL-2] gi|78364354|gb|ABB42319.1| Flp (type IV) pilus assembly protein CpaC homolog [Thiomicrospira crunogena XCL-2] Length = 520 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 98/475 (20%), Positives = 200/475 (42%), Gaps = 69/475 (14%) Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD--GKQMLNLD 113 + I++ ++ LV++P A++ V + + + + GK G+ +I+ + ++ Sbjct: 37 ESQIVKFDYPIKRALVANPDLANLKVLNSKELLVSGKQAGKTELIIWYKKAPNQVGRHIV 96 Query: 114 ILIERDIA-------HLEMTLRRFIADSNI-----------------RVEMVSDTVVLHG 149 + + D + + +R+ D + ++ V + + Sbjct: 97 LKVAPDASRREEIEQTVSTLIRQLDPDKKVKFVLKNIWIESNSSVRRELDNVGNQIDNDS 156 Query: 150 MVRTIQDSQR-------------AVELSETFLSQSGRNQYANSSSKK-----------VM 185 +++ + + ++ ++ + K+ V+ Sbjct: 157 TIKSKGNKNQDILQETQKAGSLNIKPVAGNYMVLLTGEVPNKARKKRIQSVISALGLSVV 216 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGF-------QHSITGSSSGPSKSFAADFGGKF 238 N++++ G+ Q+ L V +AEV + + G + I + +++ + Sbjct: 217 NMIDVTGKSQIKLSVRVAEVVKGNPFKSGVAIRDKKDRFGIFPPGNLGTQALFSLNNSPG 276 Query: 239 VSEGGDFS------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + G F + + S VL LE R LA+P L SG++A+F GG+ Sbjct: 277 DTAGISFPHPDAFQIGFNPENGSIFGVLSLLEGHNLARVLAKPELIVQSGETATFLVGGE 336 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----M 348 ++ T V+ +YGV L F+P V G I + ++ EVS+ + Sbjct: 337 VAIPVAQNADTIT-VSYKEYGVRLRFSPIVTESGDIQMTVEPEVSDIDAANGTQTNNIII 395 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS+R RK TT+ L G + ++ GLL+D+I+ +P+L IPILGALFR++ + +++ Sbjct: 396 PSFRSRKTSTTITLAPGQSFIIGGLLQDNIRSQVSKVPVLGDIPILGALFRSNSYVHDKS 455 Query: 409 EIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 E+ I TP V PV + +S P ++ + AFF +V ++ E++ E Sbjct: 456 ELAIMVTPTFVAPVDAGKKVSLPGENLKRPSNMDAFFLGKVAEVLPEGESALPES 510 >gi|53719509|ref|YP_108495.1| putative exported fimbriae assembly protein [Burkholderia pseudomallei K96243] gi|76808601|ref|YP_333341.1| type II/III secretion system protein [Burkholderia pseudomallei 1710b] gi|121598954|ref|YP_993098.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|124383520|ref|YP_001026125.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] gi|126440403|ref|YP_001058807.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|134282202|ref|ZP_01768907.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|167002482|ref|ZP_02268272.1| type II/III secretion system protein [Burkholderia mallei PRL-20] gi|167719788|ref|ZP_02403024.1| type II/III secretion system protein [Burkholderia pseudomallei DM98] gi|167738786|ref|ZP_02411560.1| type II/III secretion system protein [Burkholderia pseudomallei 14] gi|167816009|ref|ZP_02447689.1| type II/III secretion system protein [Burkholderia pseudomallei 91] gi|167845916|ref|ZP_02471424.1| type II/III secretion system protein [Burkholderia pseudomallei B7210] gi|167894492|ref|ZP_02481894.1| type II/III secretion system protein [Burkholderia pseudomallei 7894] gi|167902899|ref|ZP_02490104.1| type II/III secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|237812067|ref|YP_002896518.1| bacterial type II/III secretion system protein [Burkholderia pseudomallei MSHR346] gi|238562618|ref|ZP_00440075.2| bacterial type II/III secretion system protein [Burkholderia mallei GB8 horse 4] gi|242315526|ref|ZP_04814542.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|254177827|ref|ZP_04884482.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|254179957|ref|ZP_04886556.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|254188633|ref|ZP_04895144.1| type II/III secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254198005|ref|ZP_04904427.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|254260610|ref|ZP_04951664.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] gi|254358355|ref|ZP_04974628.1| type II/III secretion system protein [Burkholderia mallei 2002721280] gi|52209923|emb|CAH35895.1| putative exported fimbriae assembly protein [Burkholderia pseudomallei K96243] gi|76578054|gb|ABA47529.1| type II/III secretion system protein [Burkholderia pseudomallei 1710b] gi|121227764|gb|ABM50282.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|124291540|gb|ABN00809.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] gi|126219896|gb|ABN83402.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|134246240|gb|EBA46329.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|148027482|gb|EDK85503.1| type II/III secretion system protein [Burkholderia mallei 2002721280] gi|157936312|gb|EDO91982.1| type II/III secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|160698866|gb|EDP88836.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|169654746|gb|EDS87439.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|184210497|gb|EDU07540.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|237503987|gb|ACQ96305.1| bacterial type II/III secretion system protein [Burkholderia pseudomallei MSHR346] gi|238522203|gb|EEP85649.1| bacterial type II/III secretion system protein [Burkholderia mallei GB8 horse 4] gi|242138765|gb|EES25167.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|243061822|gb|EES44008.1| type II/III secretion system protein [Burkholderia mallei PRL-20] gi|254219299|gb|EET08683.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] Length = 441 Score = 233 bits (593), Expect = 7e-59, Method: Composition-based stats. Identities = 108/449 (24%), Positives = 173/449 (38%), Gaps = 40/449 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93 V+ + I + + V VQ V ++DP ADV+V + L K Sbjct: 14 VLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKA 73 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G ++++ + + + A R + + V+ + T V+ G T Sbjct: 74 AGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVAGSAAT 127 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + RA+ + + + G ++ K + +++ E R +LKQ Sbjct: 128 LDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVV----------EFSRSVLKQA 177 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261 G + A SV + L Sbjct: 178 GLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 237 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT Sbjct: 238 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 296 Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + + GL+ + Sbjct: 297 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRE 356 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +P L +PI+G F++ + + + E+ I TP LV P+A S P + Sbjct: 357 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 411 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + V + Y S G + Sbjct: 412 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 440 >gi|307726635|ref|YP_003909848.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] gi|307587160|gb|ADN60557.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] Length = 642 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 93/467 (19%), Positives = 182/467 (38%), Gaps = 28/467 (5%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 +R +R +++ L P+ A + +D + + + +V IL Sbjct: 8 VRLRRRVLPSVLVGVLLCEA------APLTLAQSIYSPAADDASAASRVLEMFRGEVRIL 61 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 VP ++ + + + V + L G+ G ++++ G + + + ++ Sbjct: 62 HVPGTIKRIAIGNGKLITANVVDGN-LMLLGEQDGMTSLVVWNEKGIALQTTVRIAKSEV 120 Query: 121 AHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 LR + S +R++ + +VL G++ + V + ++ + Sbjct: 121 NASLQQLRAVLKSVSGLRIDAIGSNIVLSGVI-----HRDMVAVVKSATQDMKNVVDTTT 175 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + A V KV I EV R+ + +G + + G Sbjct: 176 VDEG------EALRKTVHFKVQIMEVTRNAQRNLGIAWDSAFRGPQIGGAASVATGAAKA 229 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G + + + ++ LA P L SG +ASF +GGQ Sbjct: 230 VTAGTSYFLAGIAS-NISSQINFAVNNGDAFILAAPELNTRSGGTASFLAGGQVPIPQS- 287 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + G T+V DYGV L P V + G I + TE+S+ V+ G +P + R + Sbjct: 288 GALGTTNVMYKDYGVKLSINPVVDANGIISAHLTTEISQIDPTVSYGGLPGFLTRSTSSD 347 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +G T+ ++GL+ D +G+P L +IP++G LFR+ F +++++ I TP + Sbjct: 348 ISMRTGETLAISGLISADAVNDSDGMPFLGQIPVIGQLFRSDSFRAKKSDLVIFVTPLIS 407 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 P +L+ D + D + VNK P+ E + Sbjct: 408 DP----ELAPNTDLLARADRIDS---GYVNKFGNPEPLVADEEKAAH 447 >gi|94312586|ref|YP_585795.1| pilus assembly protein [Cupriavidus metallidurans CH34] gi|93356438|gb|ABF10526.1| pilus assembly protein [Cupriavidus metallidurans CH34] Length = 473 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 84/407 (20%), Positives = 166/407 (40%), Gaps = 37/407 (9%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH----SPRTMYLFGK 92 + + + + ++ ++ V V +P AD ++ P T+ + + Sbjct: 44 PPTGSFDTAGSRTLRLLAGAQQEIRPGQALERVAVGNPEVADALLLKHRGGPSTVLVVAR 103 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G ++ + D + + +R +++ + ++ G Sbjct: 104 KPGVTDLKIWSRDVAPVSYTVRV---------DAVRPDPGGASVDLSSAGASI--SGESP 152 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + R + + +S + + V++ + V + V + E+ + +LK+ Sbjct: 153 DAPAAARTLMAARAAVSSADGKRAGV-----VVDRSTVPVSGTVQVDVKVVEISKTVLKE 207 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVL 260 IG + + G F++ L Sbjct: 208 IGLNFYRDNGGFAFGTFSPSSLTKATFTPGVGTVVDSVSPISSAFNLIAGSVSKGIFANL 267 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +E +R LAEP+L A+SGQSASF +GG+ V + G T++ +G+ L +P Sbjct: 268 SLMEANGLVRVLAEPSLVALSGQSASFLAGGEIPIP-VPQALGTTTIQYKPFGIGLTVSP 326 Query: 321 TVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TV+S RI L++ E S+ +N +P+ R+ADTT+EL G + V+ GL+ Sbjct: 327 TVMSRERIALKVAPEASDLDPSRGIVLNGATVPAIVTRRADTTIELGDGESFVIGGLVSR 386 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + +P L +P++G+ F+N F++E+ E+ I TP L+KP+A Sbjct: 387 NTVSNVSKVPFLGDLPVIGSFFKNLNFHQEDRELMIVVTPHLIKPLA 433 >gi|53723520|ref|YP_102954.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|126448299|ref|YP_001080603.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|126452556|ref|YP_001066058.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|167824385|ref|ZP_02455856.1| type II/III secretion system protein [Burkholderia pseudomallei 9] gi|217423417|ref|ZP_03454918.1| type II/III secretion system protein [Burkholderia pseudomallei 576] gi|226199666|ref|ZP_03795219.1| type II/III secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|254199896|ref|ZP_04906262.1| type II/III secretion system protein [Burkholderia mallei FMH] gi|254206228|ref|ZP_04912580.1| type II/III secretion system protein [Burkholderia mallei JHU] gi|254297793|ref|ZP_04965246.1| type II/III secretion system protein [Burkholderia pseudomallei 406e] gi|52426943|gb|AAU47536.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|126226198|gb|ABN89738.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|126241169|gb|ABO04262.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|147749492|gb|EDK56566.1| type II/III secretion system protein [Burkholderia mallei FMH] gi|147753671|gb|EDK60736.1| type II/III secretion system protein [Burkholderia mallei JHU] gi|157807445|gb|EDO84615.1| type II/III secretion system protein [Burkholderia pseudomallei 406e] gi|217393275|gb|EEC33296.1| type II/III secretion system protein [Burkholderia pseudomallei 576] gi|225928252|gb|EEH24286.1| type II/III secretion system protein [Burkholderia pseudomallei Pakistan 9] Length = 432 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 108/449 (24%), Positives = 173/449 (38%), Gaps = 40/449 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93 V+ + I + + V VQ V ++DP ADV+V + L K Sbjct: 5 VLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKA 64 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G ++++ + + + A R + + V+ + T V+ G T Sbjct: 65 AGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVAGSAAT 118 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + RA+ + + + G ++ K + +++ E R +LKQ Sbjct: 119 LDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVV----------EFSRSVLKQA 168 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261 G + A SV + L Sbjct: 169 GLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 228 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT Sbjct: 229 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 287 Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + + GL+ + Sbjct: 288 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRE 347 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +P L +PI+G F++ + + + E+ I TP LV P+A S P + Sbjct: 348 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 402 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + V + Y S G + Sbjct: 403 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 431 >gi|167919159|ref|ZP_02506250.1| type II/III secretion system protein [Burkholderia pseudomallei BCC215] Length = 432 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 108/449 (24%), Positives = 173/449 (38%), Gaps = 40/449 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93 V+ + I + + V VQ V ++DP ADV+V + L K Sbjct: 5 VLLSFAARAAETGAIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKA 64 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G ++++ + + + A R + + V+ + T V+ G T Sbjct: 65 AGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVAGSAAT 118 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + RA+ + + + G ++ K + +++ E R +LKQ Sbjct: 119 LDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVV----------EFSRSVLKQA 168 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261 G + A SV + L Sbjct: 169 GLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 228 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPT Sbjct: 229 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 287 Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + + GL+ + Sbjct: 288 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRE 347 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +P L +PI+G F++ + + + E+ I TP LV P+A S P + Sbjct: 348 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 402 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + V + Y S G + Sbjct: 403 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 431 >gi|304311185|ref|YP_003810783.1| Probable outer membrane channel protein [gamma proteobacterium HdN1] gi|301796918|emb|CBL45131.1| Probable outer membrane channel protein [gamma proteobacterium HdN1] Length = 470 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 92/401 (22%), Positives = 157/401 (39%), Gaps = 19/401 (4%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 V G ISI + +L P +V V + + A+ + L G G ++ Sbjct: 55 PVPPGYDDVISIVQGQTTLLPFP-NVVRVSIGEENLANAQPAGANEILLTGLKAGVTDLR 113 Query: 101 LIGHDGKQ-MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + GK L I+ LE++ + + V++ G + QD+ Sbjct: 114 IWPEHGKAKRYLLKIIDNTWTRVLELSNTVLADIEGVSAREDNGIVLIEGRLLREQDAAV 173 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +L + + + + L N+ V L V + EVR+ LK++G Q Sbjct: 174 IADLKAKLKKEVKEGKVVFN-----VVLPNVKLAAMVMLDVHVVEVRKQDLKKLGVQWDS 228 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-----------RFSFETVLHALERATA 268 + G F + F + S + L+ L+ Sbjct: 229 ATAGPAYGVLGQFRGAGNFEKDTSVFGFLMTENRSPIKVGNGYIGTSIGSKLNFLQSNGV 288 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 LA+P L SG ASF +GG+ TV+ ++ GV+L +P G I Sbjct: 289 AHVLAQPKLVTRSGSEASFLAGGEIPIPTVTKDNQINTI-FKQVGVILKISPKADPDGFI 347 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 I EVS+ V +P + RK + + SG T+ ++G+L ++ + + +P L Sbjct: 348 ETAINVEVSQVDASVQVLGIPGFITRKTKMEMNVQSGQTMAISGMLSEESSKAIDKMPGL 407 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 IPILG LF++ F + TE+ I TP+LV P + ++ Sbjct: 408 GSIPILGELFKSRDFRQNTTELMIFVTPYLVDPDSEQNKEL 448 >gi|323529159|ref|YP_004231311.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] gi|323386161|gb|ADX58251.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] Length = 597 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 88/439 (20%), Positives = 172/439 (39%), Gaps = 23/439 (5%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R +R +++ L P+ A A + +D + + +V IL+ Sbjct: 9 RLRRRVLPSVLIGVLLCEA------APLALAQGASASATDDASATTHVLEMFRGEVRILR 62 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 +P ++ + + + V + L G+ G ++++ G + + + ++ Sbjct: 63 LPGTIKRIAIGNGKLITANVVDGN-LMLLGEQDGMTSLVVWNEKGIALQTTVRIAKAEVN 121 Query: 122 HLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 LR + S ++++ + +VL G+V + V + ++ + Sbjct: 122 ASLQQLRAVLKSVSGLQIDAIGSNIVLSGVV-----HRDMVAVIKSATQDMKNVIDTTTV 176 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 + A V KV I EV R+ +++G + + G Sbjct: 177 DEG------EALRKTVHFKVQIMEVTRNTQRKLGIAWDSAFRGPQIGGAASVASGAAKAV 230 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + + + ++ LA P L SG +ASF +GGQ Sbjct: 231 TAGTSYFLAGIAS-NISSQINFAVNNGDAFILAAPELNTKSGGTASFLAGGQVPIPQS-G 288 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + G T+V DYGV L P V + G I + TE+S+ V+ G +P + R + + Sbjct: 289 ALGTTNVMYKDYGVKLSINPVVDANGIISAHLTTEISQIDPTVSYGGLPGFLTRSTSSDI 348 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +G T+ ++GL+ D +G+P L +IP++G LFR+ F +++++ I TP + Sbjct: 349 SMRTGETLAISGLISADSVNDSDGMPFLGQIPVIGQLFRSDSFRAKKSDLVIFVTPLISD 408 Query: 421 P--VAMRDLSRPDDHYSVE 437 P DL D Sbjct: 409 PELAPNADLLTRADGIDRA 427 >gi|319943382|ref|ZP_08017664.1| type II and III secretion system protein [Lautropia mirabilis ATCC 51599] gi|319743197|gb|EFV95602.1| type II and III secretion system protein [Lautropia mirabilis ATCC 51599] Length = 434 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 95/412 (23%), Positives = 170/412 (41%), Gaps = 37/412 (8%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 A+ + + + I++ L + +++V V + + R + Sbjct: 8 VGAAASVLRPSSTMTSTDAIETITLSLGQGHLMEVGQ-VLRIALGSGRVLQANWLDDRQL 66 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVV 146 L + G+ + L G ++ E + L + + +S +R + D ++ Sbjct: 67 LLIPEAPGETTLHLWLKGGGIRKYQILVTESNSVRLAQDMNLLLGENSGVRARALGDRIL 126 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEV 205 L G T + + RA EL + + +V++L++ G +Q + L+V + E+ Sbjct: 127 LEGQNPTEEGAWRAAELVKRY--------------PQVISLVSRRGYEQMINLEVKMIEI 172 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET------- 258 R+ LKQ+G + G+ + G F G G F Sbjct: 173 GRNALKQLGVRWQGGGAGDWAVSGPSFGVIGDFKRSGAFLPEGGAAATRGFAVAPRIHPF 232 Query: 259 ------------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 ++ + + LAEP L+ SG A F +GG+ V S+ GA + Sbjct: 233 ATSASMVSSLSSMIDLMVQNGDAAVLAEPRLSTRSGGKARFVAGGELPIP-VLSANGAAN 291 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V +YGV P V + G I + TEVS V +P R + ++T V L G Sbjct: 292 VDFKEYGVRFEVEPVVNAQGVISASLHTEVSSIDDEVTVMGVPGLRKQSSNTDVNLRPGE 351 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 T+V+AG++++++ IP L +PILG LFR+ RF + E+E+ + TP L Sbjct: 352 TLVIAGMVRNEMSGAITKIPGLGDLPILGHLFRSKRFRQRESEMVVLITPRL 403 >gi|17549308|ref|NP_522648.1| outer membrane channel signal peptide protein [Ralstonia solanacearum GMI1000] gi|17431560|emb|CAD18238.1| probable pilus assembly, secretin cpac signal peptide protein [Ralstonia solanacearum GMI1000] Length = 454 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 91/414 (21%), Positives = 165/414 (39%), Gaps = 40/414 (9%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMYLFGKNVGQA 97 + + + + +++ ++ + + +P AD ++ ++ + K G A Sbjct: 28 QGMPADQALHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLIIAKKPGAA 87 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 N+++ G + + + + + T VL G V+ Sbjct: 88 NIMVWTQGGTALTYNVQVDAEPRGA-----------GSPDLAVQGSTAVLTGQVKD---- 132 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 L+ S + V++ +A V + V + E + +LK+ GF Sbjct: 133 --VYSLARARKSAAAAGGAEPPKGGSVIDNTTMAVPGTVQVDVRVVEFSKTVLKEAGFIF 190 Query: 218 SITGSSSGPSKSFAADFGG-----------KFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + T + G F++ L +E Sbjct: 191 TRTRGGFTFGSFSPSSLTQYTVTPSSLTTQSTTPIGTAFNLLISSFSKGIFADLSLIESN 250 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 R LAEP+L A+SGQSA+F +GG+ V + G T++ +G+ L +PT+LS Sbjct: 251 GLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFGIGLTVSPTILSEN 309 Query: 327 RIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 RI L++ E S+ + +N +P+ R+ADTTVEL G + V+ GL+ Sbjct: 310 RIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADTTVELGDGESFVIGGLVSRTTLSNV 369 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + +P L +PI+G F+ +N+EE E+ I TP LV+P+A P D Sbjct: 370 DKVPFLGDVPIIGTFFKRLNYNQEERELVIIVTPRLVRPMARNA---PIDKMLP 420 >gi|283779187|ref|YP_003369942.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283437640|gb|ADB16082.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 940 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 118/539 (21%), Positives = 209/539 (38%), Gaps = 77/539 (14%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIG------- 53 +R Q ++ + S P +++ + + E ++ + Sbjct: 406 LRARQAAEARTLTPYSQSIAPVISRPGYAQPGQTRPAALVQPEPIGPARVDMIPEGSPFE 465 Query: 54 -LNKVIILQ----------VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 +++ +L VD+ V D + DVV +PR + + GK+ G +V Sbjct: 466 VIDESGVLTVRVRRSRLLRTKVDIYRTAVVDESICDVVQFTPREVSIIGKSQGATHVTFW 525 Query: 103 -GHDGKQMLNLDILIERDIAH----------LEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 Q L + +E D L+ + DS I + +V+ +++ G Sbjct: 526 FDDPNSQPLTWLVKVEPDAEEVKKEEQTYKLLQDVINEMFPDSKIELVVVASKLIVRGQA 585 Query: 152 RTIQDSQRAVEL-----------------------SETFLSQSGRNQYANSSSKKVMNLL 188 + +++ + + + + + ++ S +V+N+L Sbjct: 586 KDSEEAAQIISIIRAQTGGQGQNGLGGGQNGLGEGAAADVLSDSATGNSSRSRLQVINML 645 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SV 247 + G QV LKV IAE+ R + G S S K + GG ++ Sbjct: 646 RVPGVHQVALKVKIAELNRTAARGFGVDLKTDISFSESEKGSSLLLESILNMAGGQAPAL 705 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 +D + + L++ ++ LAEPTL +SG+ A+F +GG+ TV S G +V Sbjct: 706 LTQIDGDEIQIGIRYLQQHGVVKLLAEPTLVTLSGRPATFIAGGEFAVPTVVGSAGLNAV 765 Query: 308 T--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 T +G ++ F PTV+ RI L + E S+ +N G P RVR A TTVE+ G Sbjct: 766 TTDFRAFGAIISFMPTVVDKDRIRLEVAPEFSQINQDLNVGGTPGLRVRAATTTVEMREG 825 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T+ +AGLL+D++ + +P L +F R ETE+ I +P LV P+ Sbjct: 826 QTLAIAGLLEDNMNGTT-----IGDLPFLAKIFGRRGMQRNETELLILVSPELVHPMEPE 880 Query: 426 DL-SRPDDHYSVEDDAKAFFFN----------------RVNKIYGPKEASEVEGQNYKG 467 ++ P + + + F R+ K YG S G G Sbjct: 881 EVPPLPGFDVTEPTNGQFFLHGDLEGNPTQDYRSTVWPRLRKRYGSGGPSMTSGPFGHG 939 >gi|160897515|ref|YP_001563097.1| type II and III secretion system protein [Delftia acidovorans SPH-1] gi|160363099|gb|ABX34712.1| type II and III secretion system protein [Delftia acidovorans SPH-1] Length = 492 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 91/473 (19%), Positives = 164/473 (34%), Gaps = 85/473 (17%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 LQR +T+ + P P + ++ G + + + ++ + Sbjct: 14 LQRAVWTLCGSMALLALPPAVSAPADTAGVQGMHAPGAGDMPSGDSLQLVAGRQHLMPLA 73 Query: 64 VDVQDVLVSDPTKADVVVHSPR----------TMYLFGKNVGQANVILIGHDGKQMLNLD 113 + V DP DV + + L K G +++ G Sbjct: 74 STPGRIAVGDPNVLDVKLLRATPGSGAGAGGTELLLTPKAQGSTTLVVWPQKGGAPQRW- 132 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 V++ ++L + ++ + +AV + Sbjct: 133 -----------------------EVQVRGQHLLLEKRLTSVPEHAQAVAELRQYAPAQTL 169 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 K + V + V + E ++ +K+IG G ++ + Sbjct: 170 LVDNAQIDVK---------SNTVQVDVQVVEFKKSAMKRIGVNIYSGGRNNQGFSFGSFS 220 Query: 234 FG-------------------------------------GKFVSEGGDFSVKGVLDRFSF 256 G + + Sbjct: 221 PGVVGSISTNTNGTGTGTGTGNTGTGGTGSGGVSNNTSSAIASAMSLVMTFGKAFSGAGI 280 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 T L LE R LA PTL A +GQ+ASF +GG+ V + G ++ ++G+ L Sbjct: 281 VTQLSILEGNGMARVLARPTLLAQTGQNASFLAGGELPIP-VPARDGNIAIQYKEFGIKL 339 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 TPT+LS RI L++ E S+ + ++ +P+ R R+ADT+VEL G + V+ G Sbjct: 340 QLTPTILSDDRIALKVSPEASDLDFNSGVTISGVTVPAIRTRRADTSVELADGESFVIGG 399 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 L+ +P+L +PILG F+N + +EE+E+ I TP LV P+ Sbjct: 400 LVSRATTSNVSKVPVLGDLPILGTFFKNLNYTQEESELVIIVTPRLVHPLPAS 452 >gi|116052338|ref|YP_792649.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115587559|gb|ABJ13574.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 416 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 71/421 (16%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + ++ + + L++ V ++ + + DP ADV + R + GK G ++++ Sbjct: 36 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + L + +E G V T Sbjct: 96 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 G + +++++ N QV + EV R LKQ G + Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274 + + K ++G + + + ++ALE + TLA Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++ Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281 Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE I +P+ RVR+ DT+V L G + V++GL + + P L Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446 IPILGA FR+++ ++++ E+ + TP LV+P+A P + ++ +F Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401 Query: 447 R 447 R Sbjct: 402 R 402 >gi|215433395|gb|ACJ66663.1| outer bacterial membrane secretin family protein [Myxococcus fulvus HW-1] Length = 482 Score = 230 bits (586), Expect = 5e-58, Method: Composition-based stats. Identities = 93/439 (21%), Positives = 175/439 (39%), Gaps = 63/439 (14%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 G +S+G+ ++ +P + V + DP+ ADV + + G+ G+ +++ Sbjct: 25 AQDGTNVSLGVGSQKVITIPG-LSRVALGDPSIADVKTLGSGQLLITGQAEGKTTLLVWK 83 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G+++ L + ++D + ++R + + + V MV D + L G T QD+ R + Sbjct: 84 SSGQRVSYLVAVRKQDPNEVITEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQ 143 Query: 163 LSETFLSQSGRNQYANSS------------------------------------------ 180 + + + + A ++ Sbjct: 144 VVGLYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQ 203 Query: 181 ---------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 +KV NLL + + + +V E+RR+ + G ++ + + S Sbjct: 204 KAELITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYP---TDITGTASAI 260 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 A+ + V + + + R LA+P L SG+ A F +GG Sbjct: 261 ANISQELFPGTFGSGVSTLALNANSDFSFGFQGNDGYGRLLAQPKLVCASGEKAEFLAGG 320 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAG 346 + + + +V YGV+L+ PT G I I+ E SE V + Sbjct: 321 EVPIPLI--TNNQFTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSS 378 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P +R R+ T V + G TIVL+G+ D Q+ +P L IPI+G LF++ F+ Sbjct: 379 SIPGFRTRRVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIVGELFKSRGFDST 438 Query: 407 ETEIFIAATPFLVKPVAMR 425 + E+ I TP +V P + + Sbjct: 439 KRELVIFVTPRIVNPDSDK 457 >gi|207724789|ref|YP_002255186.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum MolK2] gi|206590014|emb|CAQ36975.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum MolK2] Length = 447 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 93/431 (21%), Positives = 172/431 (39%), Gaps = 48/431 (11%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMY 88 A + + G + + +++ ++ + + +P AD ++ R ++ Sbjct: 4 AALAPGVHAQNMPDGPVLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLL 63 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 + K G A++++ G + ++ ++ + + + + T VL Sbjct: 64 IVAKKPGAASIMVWTQGGTAI-TYNVQVDAEARGA----------GSPDLAVQGGTAVLT 112 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G VR L+ + + +++ +A V + V + E + Sbjct: 113 GQVRD------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVPGTVQVDVRVVEFSKT 166 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFV-------------------SEGGDFSVKG 249 +LK+ GF S T + F++ Sbjct: 167 VLKEAGFSFSRTRGGFTFGAYSPSSLSQATPSWLSSTASSSSGLTVQSTQPVSTAFNLLL 226 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 L +E R LAEP+L A+SGQSA+F +GG+ V + G T++ Sbjct: 227 SSVSKGLFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEY 285 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSG 365 +G+ L +PT+LS RI L++ E S+ I +N +P+ R+ADTTVEL G Sbjct: 286 KPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDG 345 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + V+ GL+ + +P L +PI+G+ F+ +N+EE E+ I TP LV+P+A Sbjct: 346 ESFVIGGLVSRTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMARN 405 Query: 426 DLSRPDDHYSV 436 P D Sbjct: 406 A---PIDKMLP 413 >gi|313106823|ref|ZP_07793035.1| RcpA [Pseudomonas aeruginosa 39016] gi|310879537|gb|EFQ38131.1| RcpA [Pseudomonas aeruginosa 39016] Length = 416 Score = 230 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 71/421 (16%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + ++ + + L++ V ++ + + DP ADV + R + GK G ++++ Sbjct: 36 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + L + +E G V T Sbjct: 96 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 G + +++++ N QV + EV R LKQ G + Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274 + + K ++G + + + ++ALE + TLA Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++ Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281 Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE I +P+ RVR+ DT+V L G + V++GL + + P L Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446 IPILGA FR+++ ++++ E+ + TP LV+P+A P + ++ +F Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401 Query: 447 R 447 R Sbjct: 402 R 402 >gi|283781350|ref|YP_003372105.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283439803|gb|ADB18245.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 940 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 118/539 (21%), Positives = 209/539 (38%), Gaps = 77/539 (14%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIG------- 53 +R Q ++ + S P +++ + + E ++ + Sbjct: 406 LRARQAAEARTLTPYSQSIAPVISRPGYAQPGQTRPAALVQPEPIGPARVDMIPEGSPFE 465 Query: 54 -LNKVIILQ----------VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 +++ +L VD+ V D + DVV +PR + + GK+ G +V Sbjct: 466 VIDESGVLTVRVRRSRLLRTKVDIYRTAVVDESICDVVQFTPREVSIIGKSQGATHVTFW 525 Query: 103 -GHDGKQMLNLDILIERDIAH----------LEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 Q L + +E D L+ + DS I + +V+ +++ G Sbjct: 526 FDDPNSQPLTWLVKVEPDAEEVKKEEQTYKLLQDVINEMFPDSKIELVVVASKLIVRGQA 585 Query: 152 RTIQDSQRAVEL-----------------------SETFLSQSGRNQYANSSSKKVMNLL 188 + +++ + + + + + ++ S +V+N+L Sbjct: 586 KDSEEAAQIISIIRAQTGGQGQNGLGGGQNGLGEGAAADVLSDSATGNSSRSRLQVINML 645 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SV 247 + G QV LKV IAE+ R + G S S K + GG ++ Sbjct: 646 RVPGVHQVALKVKIAELNRTAARGFGVDLKTDISFSESEKGSSLLLESILNMAGGQAPAL 705 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 +D + + L++ ++ LAEPTL +SG+ A+F +GG+ TV S G +V Sbjct: 706 LTQIDGDEIQIGIRYLQQHGVVKLLAEPTLVTLSGRPATFIAGGEFAVPTVVGSAGLNAV 765 Query: 308 T--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 T +G ++ F PTV+ RI L + E S+ +N G P RVR A TTVE+ G Sbjct: 766 TTDFRAFGAIISFMPTVVDKDRIRLEVAPEFSQINQDLNVGGTPGLRVRAATTTVEMREG 825 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T+ +AGLL+D++ + +P L +F R ETE+ I +P LV P+ Sbjct: 826 QTLAIAGLLEDNMNGTT-----IGDLPFLAKIFGRRGMQRNETELLILVSPELVHPMEPE 880 Query: 426 DL-SRPDDHYSVEDDAKAFFFN----------------RVNKIYGPKEASEVEGQNYKG 467 ++ P + + + F R+ K YG S G G Sbjct: 881 EVPPLPGFDVTEPTNGQFFLHGDLEGNPTQDYRSTVWPRLRKRYGSGGPSMTSGPFGHG 939 >gi|300697742|ref|YP_003748403.1| pilus assembly protein (cpaC) [Ralstonia solanacearum CFBP2957] gi|299074466|emb|CBJ54016.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum CFBP2957] Length = 462 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 91/419 (21%), Positives = 173/419 (41%), Gaps = 40/419 (9%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMYLFGK 92 + + +G + + +++ ++ + + +P AD ++ R ++ + K Sbjct: 31 PGVHAQSMPEGPVVHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLLIVAK 90 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G A++++ G + ++ ++ + + + + T VL G VR Sbjct: 91 KPGAASIMVWTQGGTAI-TYNVQVDAEARGA----------GSPDLAVQGGTAVLTGQVR 139 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 L+ + + +++ +A V + V + E + +LK+ Sbjct: 140 D------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVPGTVQVDVRVVEFSKTVLKE 193 Query: 213 IGFQHSITGSSSGPSKSFAADFGG-----------KFVSEGGDFSVKGVLDRFSFETVLH 261 GF + T + + F++ L Sbjct: 194 AGFIFTRTRGGFTFGSFSPSSLTQYTVTPSSLSTQSTTAVSSAFNLLISSFSKGIFADLS 253 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 +E R LAEP+L A+SGQSA+F +GG+ V + G T++ +G+ L +PT Sbjct: 254 LIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFGIGLTVSPT 312 Query: 322 VLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 +LS RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ Sbjct: 313 ILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFVIGGLVSRT 372 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + +P L +PI+G+ F+ +N+EE E+ I TP LV+P+A P D Sbjct: 373 TLSNVDKVPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMARNA---PIDKMLP 428 >gi|218893396|ref|YP_002442265.1| RcpA [Pseudomonas aeruginosa LESB58] gi|254239026|ref|ZP_04932349.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719] gi|296391003|ref|ZP_06880478.1| putative type II secretion system protein [Pseudomonas aeruginosa PAb1] gi|126170957|gb|EAZ56468.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719] gi|218773624|emb|CAW29438.1| RcpA [Pseudomonas aeruginosa LESB58] Length = 416 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 71/421 (16%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + ++ + + L++ V ++ + + DP ADV + R + GK G ++++ Sbjct: 36 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + L + +E G V T Sbjct: 96 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 G + +++++ N QV + EV R LKQ G + Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274 + + K ++G + + + ++ALE + TLA Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++ Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281 Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE I +P+ RVR+ DT+V L G + V++GL + + P L Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446 IPILGA FR+++ ++++ E+ + TP LV+P+A P + ++ +F Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401 Query: 447 R 447 R Sbjct: 402 R 402 >gi|319788661|ref|YP_004148136.1| type II and III secretion system protein [Pseudoxanthomonas suwonensis 11-1] gi|317467173|gb|ADV28905.1| type II and III secretion system protein [Pseudoxanthomonas suwonensis 11-1] Length = 502 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 89/406 (21%), Positives = 153/406 (37%), Gaps = 29/406 (7%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 + +++ + + +VP ++ V V D V + G G+ NV Sbjct: 84 ASTAQPLADALTLHAGEAAVRRVPAALRRVAVGDGEILSVHTVGRNELVFIGTQPGETNV 143 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQ 158 L +G Q + + T+R + + ++ V V VV+ G S Sbjct: 144 HLWLGNGTQRTVAVNVTGSRSDGVAATVRELLGNHPDVAVRAVGSNVVISGGELDAATSA 203 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + L + + + V + VTI E +D ++ +G + Sbjct: 204 KIAALQKLYPQVLNFAGSD-----------PVGMRPMVRMDVTIMEFNKDAVEDLGIRWD 252 Query: 219 ITGSSSGPSKSFAADFGGKF----------------VSEGGDFSVKGVLDRFSFETVLHA 262 T S F + + + ++ Sbjct: 253 STISGPIGGLIRDVTTNDYFRVLPEDNRTFDEIREQLPTRLPGPQGYFGIATTIGSQINL 312 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 L LAEP L+A SG +A+F GG+ + S G T + +YG+ L+ +P V Sbjct: 313 LMSRGKAWVLAEPKLSARSGSNATFLVGGEVPIV-IPSVLGQTQIEYKEYGIRLNISPNV 371 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 S + I EVS V +P + R+A+T + + +G TIV++GLL + + Sbjct: 372 NSAREVATSIMAEVSRIDPSVAVQGVPGFLTRRAETEINVLAGQTIVISGLLDREAAKSV 431 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 + P+L IPILG LFR+ F TE+ I TP +V P + +L Sbjct: 432 DKFPILGDIPILGRLFRSDGFRGNRTELVIFVTPHIVTPDSPENLE 477 >gi|300694111|ref|YP_003750084.1| pilus assembly protein (cpac) [Ralstonia solanacearum PSI07] gi|299076148|emb|CBJ35461.2| putative pilus assembly protein (cpaC) [Ralstonia solanacearum PSI07] Length = 462 Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats. Identities = 93/446 (20%), Positives = 172/446 (38%), Gaps = 48/446 (10%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 ++ A + + + + + +++ ++ + + +P A Sbjct: 4 AAVVRGWMGALALGCAALAPGVHAQSMPADQALHLLSGSQREIRLGKPLERIAIGNPEVA 63 Query: 78 DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 D ++ ++ + K G AN+++ G + + Sbjct: 64 DALLLKGHGAAGSLLIVAKKPGAANIMVWTQGGTAITYNVQVDAAPRGA----------- 112 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 + + + T VL G V+ L+ + + S S +++ IA Sbjct: 113 GSPDLAVQGATAVLTGQVKD------VYSLARARKAAAVAGGAEPSKSGSMVDNTTIAVP 166 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------- 240 V + V + E + +LK+ GF S T + + Sbjct: 167 GTVQVDVRVVEFSKTVLKEAGFSFSRTRGGFTFGSYSPSSLSQATPAWLSSTASSSSGLT 226 Query: 241 ------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 F++ L +E R LAEP+L A+SGQSA+F +GG+ Sbjct: 227 VQSTQPVSTAFNLLLSSVSKGIFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIP 286 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPS 350 V + G T++ +G+ L +PT+LS RI L++ E S+ I +N +P+ Sbjct: 287 IP-VPQALGTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPA 345 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+ADTTVEL G + V+ GL+ + +P L +P++G+ F+ +N+EE E+ Sbjct: 346 IVTRRADTTVELGDGESFVIGGLVSRTTLSNVDKVPFLGDVPVIGSFFKRLDYNQEEREL 405 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSV 436 I TP LV+P+A P D Sbjct: 406 VIIVTPHLVRPMARDA---PIDKMLP 428 >gi|167836794|ref|ZP_02463677.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 423 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 109/444 (24%), Positives = 170/444 (38%), Gaps = 40/444 (9%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKNVGQAN 98 + + I + + V VQ V + DP ADV+V + L K G + Sbjct: 1 AAQAAEMGAIELTTGAQRQIAVGRGVQRVAIGDPNVADVLVIKGGRGGVLLVAKAAGSTS 60 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 +++ + + + A R + V T V+ G T+ Sbjct: 61 LMVWERGRDEPAVYTVDVVSGAA------RALLDGGAPGVRAYDGTAVVSGSAATLDAHA 114 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 RA+ + + + G A++ K + +++ E R +LKQ G Sbjct: 115 RALAVGKGMAGKGGGVVDASTVGGKNVVQVDVRVV----------EFSRSVLKQAGLNFF 164 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLHALERA 266 + A SV + L LE Sbjct: 165 KQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILEAN 224 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L TPTVLSP Sbjct: 225 NLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPTVLSPR 283 Query: 327 RIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ + Sbjct: 284 RIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRETTSNV 343 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + +P L +PI+G F++ + + + E+ I TP LV P+A S P + + Sbjct: 344 DKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATPGELSE 398 Query: 443 FFFNRVNKIYGPKEASEVEGQNYK 466 V + Y S G + Sbjct: 399 QRDGPVWRSYLGGALSPDAGPGFS 422 >gi|15599500|ref|NP_252994.1| RcpA [Pseudomonas aeruginosa PAO1] gi|254244885|ref|ZP_04938207.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192] gi|9950526|gb|AAG07692.1|AE004846_9 RcpA [Pseudomonas aeruginosa PAO1] gi|126198263|gb|EAZ62326.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192] Length = 416 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 71/421 (16%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + ++ + + L++ V ++ + + DP ADV + R + GK G ++++ Sbjct: 36 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + L + +E G V T Sbjct: 96 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 G + +++++ N QV + EV R LKQ G + Sbjct: 117 -------RGAPAFTVGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274 + + K ++G + + + ++ALE + TLA Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++ Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281 Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE I +P+ RVR+ DT+V L G + V++GL + + P L Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446 IPILGA FR+++ ++++ E+ + TP LV+P+A P + ++ +F Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401 Query: 447 R 447 R Sbjct: 402 R 402 >gi|115379230|ref|ZP_01466346.1| type II and III secretion system protein [Stigmatella aurantiaca DW4/3-1] gi|310822227|ref|YP_003954585.1| type II and III secretion system [Stigmatella aurantiaca DW4/3-1] gi|115363762|gb|EAU62881.1| type II and III secretion system protein [Stigmatella aurantiaca DW4/3-1] gi|309395299|gb|ADO72758.1| Type II and III secretion system [Stigmatella aurantiaca DW4/3-1] Length = 485 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 103/476 (21%), Positives = 181/476 (38%), Gaps = 75/476 (15%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T FT + L V + + G I++G+ ++ VP + Sbjct: 3 TRFTHHAAVLGVLMALVLSGTALAQERD------------GSTIALGVGTQKVITVPG-I 49 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 + + DP A+V + + G+ G+ +I+ G+++ L + +D + Sbjct: 50 ARIALGDPNVAEVKNIGNNQVLIIGQTEGKTTLIIWKSSGQRVTFLIAVRRQDPNEIISE 109 Query: 127 LRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS----- 180 +++ + + + V MV D + L G T QD+ R ++ + + + A ++ Sbjct: 110 IKKLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVSLYPNVKSFVKIAPNAKKLVA 169 Query: 181 ----------------------------------------------SKKVMNLLNIAGED 194 +KV NLL + + Sbjct: 170 QNLNAAYQKAGLRNVQANVVGSTIFLEGSVESQQDLQKAELITKAIGEKVENLLVVGIKR 229 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 + +V E+RR+ + G ++ S S + + + + S L Sbjct: 230 MILSEVQFVEIRRNSRDRYGIRYPTDISGSATASALISKELFPG-TFSSGVSSLQFLASA 288 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F A R LA+P L SG+ A F +GGQ + + +V YGV Sbjct: 289 DFAVGFQA--NDGYGRLLAQPKLVCASGEKAEFLAGGQVPIPLI--TNNQFTVEYKPYGV 344 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGTIV 369 +L+ PT G I I+ E SE V + +P +R RK T V + G TIV Sbjct: 345 ILNLRPTADRSGNIQTEIEAEASEIDTSVAVSIGGSAAVPGFRTRKVKTNVTVRHGETIV 404 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 L+G+ D Q+ +P L IPI+G LF+N F+ + E+ I TP +V P + + Sbjct: 405 LSGVFSHDEQKAVSKLPGLGHIPIIGELFKNRAFDSTKRELVIFVTPRIVNPDSDK 460 >gi|168703130|ref|ZP_02735407.1| putative outer membrane channel for pilus assembly CpaC [Gemmata obscuriglobus UQM 2246] Length = 577 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 109/488 (22%), Positives = 183/488 (37%), Gaps = 37/488 (7%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R +R + + L + + P AA ++ K + + L + Sbjct: 5 RTSRRFLPWALVVTLGLAAVTTGAGQPPDPKGAAPA-----DLDKSGAVVVPLGGLRSFD 59 Query: 62 VP----VDVQDVLVSDPTKADVVV--HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 V D+L S + P + L GK G + + ++ D L D++ Sbjct: 60 PKLKGGVPPTDILNSREDVLGARPDPNDPTKLLLTGKTAGLSQLTIVQKD-APPLKFDVV 118 Query: 116 IERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 ++ D+A L +R + +++ VE + + +VL G V + D+ L+ + + + Sbjct: 119 VKPDLAQLRKLIRDTVPTASVTVEPGLGNVIVLSGYVTSPSDADIVQRLANSAVGGANA- 177 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 V+N + I G QV + V +A V R+ L+ GF ++ G S S + Sbjct: 178 --------NVINAVQIGGVQQVQIDVVVASVDRNQLRSRGFDFALPGRGSFSFSSLVSGL 229 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETV-------LHALERATAIRTLAEPTLTAISGQSASF 287 G + G + F F V L AL + LAEP + +G+ A F Sbjct: 230 LGVQSAGGVTTATFSPDSNFQFAVVPNRFFGALRALRTEGVAKFLAEPRVVTQTGRPAFF 289 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GV 343 +GGQ + SS VT +G L P V G I L I ++ V Sbjct: 290 RAGGQQAIISGSSGITGPGVTLQPFGTELTVVPIVYGNGMIWLDINPRITAVSQGLGITV 349 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P + + +TV L SG T + GL+++ + +P+L +P G F Sbjct: 350 GGSSSPGFTEQSVQSTVLLESGQTFAIGGLIQNSVNASASKVPVLGDLPFAGTYFSRVEH 409 Query: 404 NREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 E+E+ I TP LV P+ P DD + F N + G + Sbjct: 410 TVRESELVILVTPRLVHPMDQCQGPKRLPGQETRSPDDYELFLENVLEVPRG--QRKVWN 467 Query: 462 GQNYKGAI 469 G+ Y Sbjct: 468 GKCYNAPY 475 >gi|33593509|ref|NP_881153.1| putative secretory apparatus [Bordetella pertussis Tohama I] gi|33572865|emb|CAE42800.1| putative secretory apparatus [Bordetella pertussis Tohama I] gi|332382917|gb|AEE67764.1| putative secretory apparatus [Bordetella pertussis CS] Length = 470 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 94/427 (22%), Positives = 158/427 (37%), Gaps = 36/427 (8%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 R + M++ L + + + + + +L Sbjct: 12 RGWLPWMAVLLAGGTMLWTPGGRAAPPAQPAV------------LRMEVGETQVLAAAG- 58 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 V V V + V + LF + G ++V + G + ++ L Sbjct: 59 VTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLRE 118 Query: 126 TLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 + +A R V +V+ G + D R L++ + Sbjct: 119 EVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIAALAQRYPEVLDFTG--------- 169 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGK 237 + + V L V + E+ R L+++G + G+ S + A G Sbjct: 170 ----RVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAVGGVHAGAVWNGSSAALAPPPGP 225 Query: 238 FVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G+L L AL + LA+P L A SG +ASF +GG+ Y+ Sbjct: 226 LAGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYR 285 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T T++ YGV L TP + + G + RI+ E S + P+ R R+A Sbjct: 286 TTDKEGNGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRA 344 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + SG T+VL G L + ++G+P LS++P++GALF R ETE+ I TP Sbjct: 345 VTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTP 404 Query: 417 FLVKPVA 423 +V P Sbjct: 405 TIVSPSD 411 >gi|108762925|ref|YP_631309.1| outer membrane secretin family protein [Myxococcus xanthus DK 1622] gi|108466805|gb|ABF91990.1| protein transporter, outer bacterial membrane secretin (secretin) family [Myxococcus xanthus DK 1622] Length = 482 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 92/439 (20%), Positives = 174/439 (39%), Gaps = 63/439 (14%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 G +S+G+ ++ +P + V + DP+ A+V + + G+ G+ +++ Sbjct: 25 AQDGTTVSLGVGSQKVITIPG-LSRVALGDPSVAEVKTLGSGQLLITGQAEGKTTLLVWK 83 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G+++ L + ++D + ++R + + + V MV D + L G T QD+ R + Sbjct: 84 SSGQRVSYLVAVRKQDPNEVISEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQ 143 Query: 163 LSETFLSQSGRNQYANSS------------------------------------------ 180 + + + + A ++ Sbjct: 144 VVGLYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQ 203 Query: 181 ---------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 +KV NLL + + + +V E+RR+ + G ++ + + + Sbjct: 204 KAELITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYP---TDITGTATAI 260 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 A + V + + + R LA+P L SG+ A F +GG Sbjct: 261 ASISQELFPGTFGSGVSTLTLNANADFSFGFQGNDGYGRLLAQPKLVCASGEKAEFLAGG 320 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAG 346 + + + +V YGV+L+ PT G I I+ E SE V + Sbjct: 321 EVPIPLI--TNNQFTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSA 378 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P +R RK T V + G TIVL+G+ D Q+ +P L IPI+G LF++ F+ Sbjct: 379 SIPGFRTRKVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIIGELFKSRGFDST 438 Query: 407 ETEIFIAATPFLVKPVAMR 425 + E+ I TP +V P + + Sbjct: 439 KRELVIFVTPRIVNPDSDK 457 >gi|239817412|ref|YP_002946322.1| type II and III secretion system protein [Variovorax paradoxus S110] gi|239803989|gb|ACS21056.1| type II and III secretion system protein [Variovorax paradoxus S110] Length = 457 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 103/444 (23%), Positives = 170/444 (38%), Gaps = 64/444 (14%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 S+ A A+A + + + + L + ++ + + Sbjct: 21 FSLIALCVLALGAWPIATNAADATPVR-----PQPQRPLILNAGTQQELLIEKGIERMAI 75 Query: 72 SDPTKADVVVHS------PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 +D A + V + + GK G+ +++ I + R Sbjct: 76 ADEAVAAITVTRKGPNSPAARLIITGKAAGRTTLMIWEKGNSAATTYSIEVRRR------ 129 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 + L G + ++ Q+A E + G + A + V+ Sbjct: 130 ------------------SATLAGTMDSVAAHQQARETAMA-----GMPEKAELIDRSVV 166 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGD 244 N+ + V ++V + E R +LKQ G S +S+G S + + Sbjct: 167 NV----RSNTVQVEVKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFGPSSLGSTTFASN 222 Query: 245 FSVKG--------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 S+ G + + LE R LAEPTL A+SGQSASF +G Sbjct: 223 GSISGEYHNPLAQAFSLLFNFGKAGVGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLAG 282 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AG 346 G+ G TS+ +G+ L TPTVLS RI L++ E S+ + Sbjct: 283 GELPVP-APQGLGTTSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSIGGV 341 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P+ R+ADTTVEL G + ++ GL+ + +PLL +PILG FR +++ Sbjct: 342 AVPAITTRRADTTVELGDGESFIIGGLVSRTTTSNVDKVPLLGDLPILGTFFRQNKYQMS 401 Query: 407 ETEIFIAATPFLVKPVAMRDLSRP 430 E E+ I TP LVKP+A P Sbjct: 402 EKELVILVTPHLVKPIARGTDLTP 425 >gi|330816715|ref|YP_004360420.1| Type II and III secretion system protein [Burkholderia gladioli BSR3] gi|327369108|gb|AEA60464.1| Type II and III secretion system protein [Burkholderia gladioli BSR3] Length = 477 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 118/493 (23%), Positives = 195/493 (39%), Gaps = 63/493 (12%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + +V+ L A+AA G + + + + ++Q V V DP Sbjct: 5 LIALAIAVSALALSSWASAA---------GPEAGVDLAVGAQRQIASGRNLQRVAVGDPA 55 Query: 76 KADVVVH-SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 AD+++ + L GK+ G NV+L + + + A + D+ Sbjct: 56 VADILIIKGGGGVMLIGKSAGTTNVMLWERGRSEPTVYTVHVTSGAA------HALLNDA 109 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA----------------- 177 RV+ DT V+ G T++ QRAV+++ + Q + Sbjct: 110 TPRVDTYGDTTVISGSANTLEAHQRAVDVANAAAAARAAAQQSSSAGGGQGKGQAVGRGG 169 Query: 178 --------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 +S+ V++ I+G + V + V + E R +KQ G + + Sbjct: 170 GNGGGGGGDSAGPNVVDASTISGRNVVQVDVRVVEFSRSAIKQAGLNLFKSNNGFSFGSF 229 Query: 230 FAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLHALERATAIRTLAEPTL 277 + + +V V L LE+ R LA+PTL Sbjct: 230 APSSLQSSSYNPSAGLTVTAVSPITSAFNLVVGSTSRGIAGNLSVLEQNNLARILAQPTL 289 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A+SGQSASF +GG+ V S G S+ YG+ L TPTVL P RI L++ E S Sbjct: 290 VALSGQSASFLAGGEIPVP-VPQSLGTISIEYKPYGIGLTVTPTVLGPNRIALKVAPEAS 348 Query: 338 EPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + I +N+ +P+ R+ADTTVEL G + V+ GL+ + +P L +PI Sbjct: 349 QLDFLNAITINSITVPALTTRRADTTVELGDGESYVIGGLVDRETTSNVSKVPFLGDLPI 408 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 +GA F++ + + + E+ TP LV P+A S P S + V + + Sbjct: 409 IGAFFKSLNYQQNDKELVFVVTPHLVSPIAAGA-SLP----STPGEQSEQRDGPVWRSFL 463 Query: 454 PKEASEVEGQNYK 466 + Sbjct: 464 GGILVPDAAPGFS 476 >gi|107100112|ref|ZP_01364030.1| hypothetical protein PaerPA_01001133 [Pseudomonas aeruginosa PACS2] Length = 408 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 93/421 (22%), Positives = 170/421 (40%), Gaps = 71/421 (16%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + ++ + + L++ V ++ + + DP ADV + R + GK G ++++ Sbjct: 28 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 87 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + L + +E G V T Sbjct: 88 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 108 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 G + + +++ N QV + EV R LKQ G + Sbjct: 109 -------RGAPAFTVGAVEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 153 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274 + + K ++G + + + ++ALE + TLA Sbjct: 154 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 213 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++ Sbjct: 214 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 273 Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE I +P+ RVR+ DT+V L G + V++GL + + P L Sbjct: 274 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 333 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446 IPILGA FR+++ ++++ E+ + TP LV+P+A P + ++ +F Sbjct: 334 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 393 Query: 447 R 447 R Sbjct: 394 R 394 >gi|91777217|ref|YP_552425.1| putative type II and III secretion system outermembrane protein, secretin [Burkholderia xenovorans LB400] gi|91689877|gb|ABE33075.1| Putative type II and III secretion system outermembrane protein, secretin [Burkholderia xenovorans LB400] Length = 595 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 88/443 (19%), Positives = 171/443 (38%), Gaps = 19/443 (4%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 +R +++ L A + A+AA +D + + + +V IL +P Sbjct: 11 RRRVLPSVLVGMLLCEAAPAALAQTAQAAHAAYTAATDSPSASTRVLEMFRGEVRILHIP 70 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 ++ + + + V ++ L G+ G ++++ G + + + ++ Sbjct: 71 GTIKRIAIGNGKLLTANVVDG-SLMLLGEQDGITSLVVWNDKGIALQTTVRIAKAEVNAS 129 Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 LR + + +R++ + +VL G++ + + + + + Sbjct: 130 LEQLRAVLRSVAGLRIDAIGSNIVLSGVI-----HRDMAGTVKAATQEMKNVVDTTTFDE 184 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 A V KV I EV R + +G + + G Sbjct: 185 GD------ALRKTVHFKVQIMEVTRTGQRNLGIAWDSAFRGPQIGGAASVATGAAKAITA 238 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G + + + ++ LA P L SG +ASF +GGQ + Sbjct: 239 GTSYFLAGIAS-NITSQINFAVENGDAYVLAAPELNTKSGGTASFLAGGQVPIPQS-GAL 296 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 G TS+ DYG+ L P V + I + TE+S+ V MP + R + + + Sbjct: 297 GTTSIEYKDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYAGMPGFLTRNTSSDISM 356 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +G T+ ++GL+ D G+P LS++PI+G LFR+ RF +++++ I TP + P Sbjct: 357 RAGETLAISGLVSADAANDSNGMPFLSQVPIIGQLFRSDRFRAKKSDLVIFVTPVISDP- 415 Query: 423 AMRDLSRPDDHYSVEDDAKAFFF 445 +LS D + D F Sbjct: 416 ---ELSPNTDLLARADKLDENFR 435 >gi|319779649|ref|YP_004130562.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella equigenitalis MCE9] gi|317109673|gb|ADU92419.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella equigenitalis MCE9] Length = 508 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 84/396 (21%), Positives = 167/396 (42%), Gaps = 30/396 (7%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 K I + + ++ +L + V V + + + + LFG + G + Sbjct: 27 AQTTNTPKAIKMEIGQIEVLNF-QSIGRVAVGNSKLLNATTSDDKELVLFGLSEGFTTLQ 85 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQR 159 + G ++ + L ++R + N++ +++D V++ G + D ++ Sbjct: 86 VWDKGGSSSSYRVVIESANQNKLLKDIQRILNKIPNVKTSVIADKVIVEGDKLSDFDREK 145 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 V+L++ + + + + ++ + + V I E+ R ++Q+G + Sbjct: 146 VVQLTKHY-------------PQIIDMSSQVGWDEMLMIDVQIVELPRQFVQQLGLRWGT 192 Query: 220 T------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALER 265 T GS++ + ++ ++ V G + + ++A+ Sbjct: 193 TAEGGVQIGATLEGSTAKKAFAYQSNLLANSVGNAGAIANPAFFGGINAFLNASINAMAV 252 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 LA+P LTA +G +A F +GG+ Y V A +V YGV L+ TP + Sbjct: 253 EGQAVVLAQPQLTARNGTTAEFLAGGEVPYSMVDDKGQAQTV-FKPYGVSLNITPRIQRD 311 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G + +I EVS +N P+ + R+ T SG IV++G + D Q + Sbjct: 312 GTVRSKINVEVSTVDTSMNLNGGPALKTRRTSTEFNTKSGEPIVISGFISRDQMQSMTKV 371 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 P +++ PILG LF++ F ETE+ I P++VKP Sbjct: 372 PGIAETPILGELFKSRNFQNNETELVIIVRPYVVKP 407 >gi|190574779|ref|YP_001972624.1| putative exported fimbriae assembly protein [Stenotrophomonas maltophilia K279a] gi|190012701|emb|CAQ46329.1| putative exported fimbriae assembly protein [Stenotrophomonas maltophilia K279a] Length = 451 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 104/436 (23%), Positives = 176/436 (40%), Gaps = 43/436 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTMYLFGKNVGQANVILIGH 104 + + + +P D++ V ++DP AD+V+ R L GK G ++L Sbjct: 30 AADDLVLQAREQRPWTLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHR 89 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV-VLHGMVRTIQDSQRAVEL 163 + L + ++ + SN V D +L G ++ + + Sbjct: 90 KQAEPQRLQVRVQSAVQGAADA------GSNGLVFTQQDNQGLLQGSTDSVLSHMQEQKT 143 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + L + G A++ S + + + + + LKQIG S Sbjct: 144 AAMALGKDGLLADASTVSSGGVVQVEVKVVE----------FNKTALKQIGISFQNRNGS 193 Query: 224 SGPSKSFAADFGGKFVSE-----------------GGDFSVKGVLDRFSFETVLHALERA 266 + F + + + + L+ Sbjct: 194 FAYGFARPGGQLPGNTGILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSN 253 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 R LAEPTL A+SGQSASF +GG+ G T++T +G+ L TPTVL+P Sbjct: 254 GMARVLAEPTLVALSGQSASFLAGGELP-ILEPQGLGTTTITYKPFGIGLTVTPTVLAPN 312 Query: 327 RIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 RI L++ E S+ N +PS R+ADTTVEL G + V+ GL+ ++ Sbjct: 313 RIALKVAPEASDLDYSNAIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSNV 372 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED--D 439 IPLL +PI+G+ FRN + R++ E+ I TP LV+P+A +L P + + + Sbjct: 373 GKIPLLGDLPIIGSFFRNFDYKRQDKELVIIVTPRLVQPLARNTELPLPGEREAKPHMPE 432 Query: 440 AKAFFFNRVNKIYGPK 455 A+ +++ P Sbjct: 433 WGAWLLGPISQDPVPG 448 >gi|83747917|ref|ZP_00944949.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551] gi|207739458|ref|YP_002257851.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum IPO1609] gi|83725450|gb|EAP72596.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551] gi|206592834|emb|CAQ59740.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum IPO1609] Length = 462 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 94/446 (21%), Positives = 174/446 (39%), Gaps = 48/446 (10%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 ++ A + + G + + +++ ++ + + +P A Sbjct: 4 AAVVRGWMGALALGCAALAPGVHAQSMPDGPVLHLLSGSQREIRLGKPLERIAIGNPEVA 63 Query: 78 DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 D ++ R ++ + K G A++++ G + ++ +E + Sbjct: 64 DALLLKGRGAAGSLLIVAKKPGAASIMVWTQGGTAI-TYNVQVEAEARGA---------- 112 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 + + + T VL G VR L+ + + +++ +A Sbjct: 113 GSPDLAVQGGTAVLTGQVRD------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVP 166 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-------------- 239 V + V + E + +LK+ GF S T + Sbjct: 167 GTVQVDVRVVEFSKTVLKEAGFSFSRTRGGFTFGAYSPSSLSQATPSWLSSTASSSSGLT 226 Query: 240 -----SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 F++ L +E R LAEP+L A+SGQSA+F +GG+ Sbjct: 227 VQSTQPVSTAFNLLLSSVSKGLFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIP 286 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPS 350 V + G T++ +G+ L +PT+LS RI L++ E S+ I +N +P+ Sbjct: 287 IP-VPQALGTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPA 345 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+ADTTVEL G + V+ GL+ + +P L +PI+G+ F+ +N+EE E+ Sbjct: 346 IVTRRADTTVELGDGESFVIGGLVSRTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEEREL 405 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSV 436 I TP LV+P+A P D Sbjct: 406 VIIVTPRLVRPMARNA---PIDKMLP 428 >gi|311107631|ref|YP_003980484.1| type II and III secretion system family protein 2 [Achromobacter xylosoxidans A8] gi|310762320|gb|ADP17769.1| bacterial type II and III secretion system family protein 2 [Achromobacter xylosoxidans A8] Length = 453 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 103/478 (21%), Positives = 186/478 (38%), Gaps = 41/478 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M+ QRT + + A + + A + + IS+ + L Sbjct: 1 MKKHQRT-------TMICLLSAAAAMTLGGLSLAQTAAPAAGANAPVRDISMAVKGQQSL 53 Query: 61 QVPVDV-QDVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDI 114 + + + DP ADV V ++ L+GK G + + + ++ Sbjct: 54 VLDGGAPARIAIGDPDVADVKVLPATGKRAASVLLYGKKPGTTQLQIWTGNNAAPQIWNV 113 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 + ++ L V++ V+ G + + ++ + + Sbjct: 114 RVG---GSVQGALASRGLGGGANVDIADGHAVVSGHAESQLGQIASATMAASAVGGEKNV 170 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 +++ + + + + V R ++K G + + S Sbjct: 171 VDMSTAGTGGVVQVEVKVVE----------VSRSVMKAAGISFTASNGPWSGGSSTMPAS 220 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G ++ G D +F L L+ R LAEPTL A++GQSASF +GG+ Sbjct: 221 LGGALASG----FSLFYDSNNFSARLRLLQTNGMARVLAEPTLVALTGQSASFLAGGELP 276 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---------NA 345 G +VT +G+ L TPTVLS RI L++ E SE + Sbjct: 277 IPQA-GGLGTVNVTFKPFGIGLTVTPTVLSRDRISLKVAPEASELDYTNGIAINTSADTS 335 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ R R+ADTTVEL G + V++GL+ + + +P+L +PI+G+ FR+ +++ Sbjct: 336 TIIPALRTRRADTTVELGDGESFVISGLVSRQTKAMVNKVPMLGDLPIIGSFFRSVDYSQ 395 Query: 406 EETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 E+TE+ I TP LV+P+A L P D A + + G ++ Sbjct: 396 EDTELVIVVTPRLVRPIARGVALPLPGAKQEQTDTAFNAWGYYLTGPMGGQQMPGFSR 453 >gi|33596527|ref|NP_884170.1| putative secretory apparatus [Bordetella parapertussis 12822] gi|33566296|emb|CAE37209.1| putative secretory apparatus [Bordetella parapertussis] Length = 470 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 91/427 (21%), Positives = 156/427 (36%), Gaps = 36/427 (8%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 R + M++ L + + + + + + +L Sbjct: 12 RGWLPWMAVLLAGGSMLWTPGGRAASPAQPAV------------LRMEVGETQVLAAAG- 58 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 V V V + V + LF + G ++V + G + ++ L Sbjct: 59 VTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLRE 118 Query: 126 TLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 + +A V +V+ G + D R L++ + Sbjct: 119 EVAALLARIPRAHSSAVGAHIVIEGSQLSEDDHARIAALAQRYPEVLDFTG--------- 169 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGK 237 + + V L V + E+ R L+++G + G+ + A G Sbjct: 170 ----RVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGP 225 Query: 238 FVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G+L L AL + LA+P L A SG +ASF +GG+ Y+ Sbjct: 226 LAGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYR 285 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T++ YGV L TP + + G + RI+ E S + P+ R R+A Sbjct: 286 ATDKEGNGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRA 344 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + SG T+VL G L + ++G+P LS++P++GALF R ETE+ I TP Sbjct: 345 VTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTP 404 Query: 417 FLVKPVA 423 +V P Sbjct: 405 TIVSPSD 411 >gi|33601080|ref|NP_888640.1| putative secretory apparatus [Bordetella bronchiseptica RB50] gi|33575515|emb|CAE32593.1| putative secretory apparatus [Bordetella bronchiseptica RB50] Length = 470 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 92/427 (21%), Positives = 157/427 (36%), Gaps = 36/427 (8%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 R + M++ L + + + + + + +L Sbjct: 12 RGWLPWMAVLLAGGSMLWTPGGRAASPAQPAV------------LRMEVGETQVLAAAG- 58 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 V V V + V + LF + G ++V + G + ++ L Sbjct: 59 VTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLRE 118 Query: 126 TLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 + +A R V +V+ G + D R L++ + Sbjct: 119 EVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIAALAQRYPEVLDFTG--------- 169 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGK 237 + + V L V + E+ R L+++G + G+ + A G Sbjct: 170 ----RVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGP 225 Query: 238 FVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G+L L AL + LA+P L A SG +ASF +GG+ Y+ Sbjct: 226 LSGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYR 285 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T++ YGV L TP + + G + RI+ E S + P+ R R+A Sbjct: 286 ATDKEGNGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRA 344 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + SG T+VL G L + ++G+P LS++P++GALF R ETE+ I TP Sbjct: 345 VTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTP 404 Query: 417 FLVKPVA 423 +V P Sbjct: 405 TIVSPSD 411 >gi|149927033|ref|ZP_01915291.1| type II/III secretion system protein [Limnobacter sp. MED105] gi|149824254|gb|EDM83474.1| type II/III secretion system protein [Limnobacter sp. MED105] Length = 473 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 102/438 (23%), Positives = 176/438 (40%), Gaps = 46/438 (10%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 + ++ +A I A + +++ ++ +P V + DP Sbjct: 10 SVVAAISLIACAGLISPQVAVGQTPAAPSSAAPFVLTLSTGFQKVISLPGIPARVSIGDP 69 Query: 75 TKADVVVHSPR-------TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 T A V V P + + G G ++++ + + + A TL Sbjct: 70 TIASVTVLKPTDRGGKNAGVLVTGLKTGSTSLLIWDRGASMARVITVSVTGKAAETISTL 129 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + ++ +E + L G + Q+A E S ++ ++++ Sbjct: 130 K------DLNLETEGQVLKLSGSTPNVSTYQQARE--------SLIKPGSDGKPAELIDQ 175 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----FAADFGGKFVSEG 242 I V + V + E R L+++G + + G + S + GG + Sbjct: 176 ATIQTSGTVQVDVKVVEFTRSELQRLGINLTGQVNGGGFTYSIAGPASVSGSGGVSNAFS 235 Query: 243 GDFSVKGVLDRFSFETV---------------LHALERATAIRTLAEPTLTAISGQSASF 287 F+ G + + L+ L+ + LAEP+L A SGQ ASF Sbjct: 236 LAFNGAGCVGEAVIGALNPTPVGPRTCDLVSGLNILQADGYAKVLAEPSLIAQSGQDASF 295 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGV 343 +GG+ V S G + +GV L FTPT+LS I LR+ EVS+ + Sbjct: 296 LAGGEIPIP-VPSGNGTIGIEYKKFGVGLSFTPTILSNKTIALRVSPEVSDLDFSRGTSI 354 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +P+ R+A TTVEL + V+ GL+ +I +P LS+IPILGA F+ + + Sbjct: 355 QGVLVPAILTRRASTTVELGENQSFVIGGLISRNIIANANRVPWLSEIPILGAFFKGNTY 414 Query: 404 NREETEIFIAATPFLVKP 421 +RE+ E+ I TP VKP Sbjct: 415 SREDKELLIIVTPRFVKP 432 >gi|194366097|ref|YP_002028707.1| type II and III secretion system protein [Stenotrophomonas maltophilia R551-3] gi|194348901|gb|ACF52024.1| type II and III secretion system protein [Stenotrophomonas maltophilia R551-3] Length = 452 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 99/430 (23%), Positives = 172/430 (40%), Gaps = 41/430 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTMYLFGKNVGQANVILIGH 104 + + + +P D++ V ++DP AD+V+ R L GK G ++L Sbjct: 31 AADDLVLQAREQRPWTLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHR 90 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 + + + ++ + T + + +L G ++ + + Sbjct: 91 KQAEPQRMQVRVQSAVQGAADT-----GSGGLVFTQQDNQGLLQGSTDSVLSHMQEQRTA 145 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 L + G ++ S + + + + + LKQIG + Sbjct: 146 AMALGKDGTLADTSTISSGGVVQVEVKVVE----------FNKTALKQIGISFQNRNGNF 195 Query: 225 GPSKSFAADFGGKFVSE-----------------GGDFSVKGVLDRFSFETVLHALERAT 267 + F + + + + L+ Sbjct: 196 AYGFARPGGQLPGNTGILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSNG 255 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 R LAEPTL A+SGQSASF +GG+ G T++T +G+ L TPTVL+P R Sbjct: 256 MARVLAEPTLVALSGQSASFLAGGELP-ILEPQGLGTTTITYKPFGIGLTVTPTVLAPNR 314 Query: 328 IGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 I L++ E S+ N +PS R+ADTTVEL G + V+ GL+ ++ Sbjct: 315 IALKVAPEASDLDYSNAIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSSVG 374 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED--DA 440 IPLL +PI+G+ FRN + R++ E+ I TP LVKP+A +L P D + + Sbjct: 375 KIPLLGDLPIIGSFFRNFDYKRQDKELVIIVTPRLVKPLARNTELPLPGDREAKPHMPEW 434 Query: 441 KAFFFNRVNK 450 A+ +++ Sbjct: 435 GAWLLGPISQ 444 >gi|187921506|ref|YP_001890538.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] gi|187719944|gb|ACD21167.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] Length = 561 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 87/443 (19%), Positives = 163/443 (36%), Gaps = 25/443 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 +R +++ L P A + + + +V IL VP Sbjct: 11 RRRVMPSVLIGMLLCEA------APAALAQVGYSAAMASPSASTRVLEMFRGEVRILHVP 64 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 ++ + + + V ++ L G+ G ++++ G + + + +++ Sbjct: 65 GTIKRIAIGNGKLVTANVVDG-SLMLLGERDGITSLVVWNEKGIALQTTVRIAKAEVSAS 123 Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 LR + S + ++ + +VL G++ + + + + Sbjct: 124 VEQLRAVLQSVSGLHIDAIGSNIVLSGVI-----HRDMTGIVKAATQDMQNVIDTTKVDE 178 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 A V KV I EV R + +G + + G Sbjct: 179 GD------ALRKTVHFKVQIMEVTRTGQRNLGIAWDSAFKGPQIGGAASVATGAAKAVTA 232 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G + + + ++ LA P L SG +ASF +GG + Sbjct: 233 GTSYFLAGIAS-NITSQINFAVENGDAYVLAAPELNTKSGGTASFLAGGTVPIPQS-GAL 290 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 G TSV DYG+ L P V + I + TE+S+ V G MP + R + + + Sbjct: 291 GTTSVEYRDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYGGMPGFLTRNTTSDISM 350 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +G T+ ++GL+ D G+P LSK+PI+G LFR+ F +++++ I TP + P Sbjct: 351 RAGETLAISGLVSADAANDTTGMPFLSKVPIIGQLFRSDAFRAKKSDLVIFVTPVISDP- 409 Query: 423 AMRDLSRPDDHYSVEDDAKAFFF 445 +LS D + D F Sbjct: 410 ---ELSPNADLLARADRLDKSFR 429 >gi|127511579|ref|YP_001092776.1| type II and III secretion system protein [Shewanella loihica PV-4] gi|126636874|gb|ABO22517.1| type II and III secretion system protein [Shewanella loihica PV-4] Length = 436 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 88/406 (21%), Positives = 166/406 (40%), Gaps = 32/406 (7%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 ++ + + + + + + L +V+ ++V + V + + L G+ G Sbjct: 14 LLLPASSMAHNNRPMKLYVG-AVELYKAANVERIVVGNGKVLSAKVVDNKGVLLIGEAPG 72 Query: 96 QANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 ++ L DGK + +L + + + M + A ++ V +++ G + Sbjct: 73 NTDLQLWQKDGKLIKLSLTVTPDNSLRTTTMVKKMLAAFPSLTVSESDGLIIVQGEA-DL 131 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 ++ ++ E + +Y + V ++V I E + L +G Sbjct: 132 AQKEQLEKILEGDPNVVSLVKYLKFAK---------TMSPMVKMQVKIVEFNKSTLNNVG 182 Query: 215 FQH--SITGSSSGPSKSFAADFGGKFVSEGG-----------------DFSVKGVLDRFS 255 + S+ G + G +K F A+ S G + Sbjct: 183 IKWETSMAGPAYGVAKGFTANPIFNVASPGQYTEAITKSITENIGVLDTRGWSSLGIVSG 242 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + + L R LA+P LT SG+SASF +GG+ ++V S GA V +YG+ Sbjct: 243 IGSQIQLLSEKGDARLLAQPNLTTRSGESASFLAGGEFPIRSV-SGLGAVDVEYKEYGIK 301 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L P V I R+ EVS V +P R+ ++ + + + TIV++GL+ Sbjct: 302 LDIEPVVDEQQNIVSRVMAEVSSIDPSVAVDGVPGMLTRRTESVINVKNNETIVISGLVN 361 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 ++ ++ PLL IPILG LF++ F ++TE+ I TP +V P Sbjct: 362 SEMSKIVNKFPLLGDIPILGELFKSRDFKDDKTELVIFVTPVVVYP 407 >gi|229588195|ref|YP_002870314.1| putative type II secretion system protein [Pseudomonas fluorescens SBW25] gi|229360061|emb|CAY46915.1| putative type II secretion system protein [Pseudomonas fluorescens SBW25] Length = 405 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 106/452 (23%), Positives = 175/452 (38%), Gaps = 73/452 (16%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKI-------SIGLNKVIILQVPVDVQDVLVS 72 P + ++ + ++ G + +G LQ PV + + + Sbjct: 6 APLFMHMAWALMLSSLPVGMALAAPGNCSALGQLPAVVEVGEGLQQELQSPVAITRLAIG 65 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 DP ADV V+ R L G G ++++ T R+ + Sbjct: 66 DPKIADVRVNGDRHFLLTGVASGATSLMVW------------------TACASTPRQSM- 106 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 V + G + + + S ++ Sbjct: 107 ------------VFVKGRATSAL-----------------TSLSLSPSEDPLL------- 130 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVL 251 QV + EV R LK+ + TG + S + + G F S Sbjct: 131 PSQVQTDIRFVEVSRTKLKEASTRLLGTGKNFFLGSPNLLSPSEGVFKLPVSTDSFNVGF 190 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 +++ALER+ TLA P+L A+SGQSASF +GG+ S+ + S+ + Sbjct: 191 GGGRVSAMINALERSGFAYTLARPSLVAMSGQSASFLAGGEVPVPVPSAGSDTISIEYKE 250 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGT 367 +G+ L TPTV+ RI L++ EVSE + +P+ VR+ DT+V L G + Sbjct: 251 FGIRLTLTPTVIDRNRITLKVAPEVSELDYSNAVIIQGIQVPALTVRRTDTSVSLADGES 310 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 V++GL+ + + P L IPILGA FR+S +REE E+ + TP LV+P+A Sbjct: 311 FVISGLISTNNRSTISKFPGLGDIPILGAFFRDSNISREEKELLMIVTPHLVQPLAANAQ 370 Query: 428 --SRPDDHYS--VEDDAKAFFF--NRVNKIYG 453 S P + + + FF ++ G Sbjct: 371 LPSLPGEKLRSYDPNWFRLFFLENGNFDRRSG 402 >gi|238027562|ref|YP_002911793.1| type II and III secretion system protein [Burkholderia glumae BGR1] gi|237876756|gb|ACR29089.1| Type II and III secretion system protein [Burkholderia glumae BGR1] Length = 476 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 110/492 (22%), Positives = 190/492 (38%), Gaps = 62/492 (12%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + +++ + ANAA ++ + + + + +Q V + DP Sbjct: 5 LIALAMAMSAVMASAVANAAGLDAG---------VDLAVGAQRQIATGRSLQRVAIGDPA 55 Query: 76 KADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 ADV+V + L GK+ G NV+L + + + A + + Sbjct: 56 VADVLVVKGNGGGVLLIGKSAGTTNVMLWERGRSEPDVYPVHVTSGAA------KALLGP 109 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------------ 181 RV+ DT V+ G T++ QRAV+++ + Q + Sbjct: 110 DTPRVDTYGDTTVIAGSATTLEAHQRAVDVANAAAAARAAAQAGGGGAAAAAGVGGKTAG 169 Query: 182 -----------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 V++ I+G + V + V + E R +KQ G + + Sbjct: 170 AGGMGGAGGAAPSVVDASTISGRNVVQVDVRVVEFSRSAVKQAGLNFFKSSNGFAFGSFA 229 Query: 231 AADFG------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + F++ + L LE+ R LA+PTL Sbjct: 230 PSSLSSLGSSATSGLAVTAAQPIASAFNLVVGSASRGISSNLSILEQNNLARILAQPTLV 289 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A+SGQSA+F +GG+ V + G S+ YG+ L PTVL P RI L++ E S+ Sbjct: 290 ALSGQSANFLAGGEIPVP-VPQALGTVSIEWKPYGIGLTVAPTVLGPNRIALKVAPEASQ 348 Query: 339 PV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 I +N +P+ R+ADTTVEL G + V+ GL+ + +P L +PI+ Sbjct: 349 LDFVNAITINGVTVPALTTRRADTTVELGDGESYVIGGLVDRETTSNLSKVPFLGDLPII 408 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 GA F++ + + + E+ I TP LV P+A + P + + V + + Sbjct: 409 GAFFKSLSYQQNDKELVIIVTPHLVSPIAAGT-TLP----AAPGELSEQRDGPVWRSFLG 463 Query: 455 KEASEVEGQNYK 466 + Sbjct: 464 GMLVPDAAPGFS 475 >gi|319795779|ref|YP_004157419.1| type II and iii secretion system protein [Variovorax paradoxus EPS] gi|315598242|gb|ADU39308.1| type II and III secretion system protein [Variovorax paradoxus EPS] Length = 462 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 107/466 (22%), Positives = 178/466 (38%), Gaps = 64/466 (13%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 P I A + N + + +G L + + + ++D T A V + Sbjct: 35 APGIWPAASVAANATPPPRQSQIPLVVGAGTQQELLIQKGIDRLAIADETVAGVTITRKT 94 Query: 86 ------TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 + + GK G+ +++ + + R + Sbjct: 95 PNSPAARLIITGKTAGRTTLMVWEKGSASATTYALEVRRRAS------------------ 136 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 L G + ++ + Q+A + + G + ++N+ + V ++ Sbjct: 137 ------TLTGTLDSMVEHQQARDAASA-----GAGDKTPLVDRSIVNV----RSNTVQVE 181 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------GGD 244 V + E R +LKQ G T ++S G S Sbjct: 182 VKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFSPAGLKSSTFASDGSINGEYNNPLAQA 241 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 FS+ + + LE R LAEPTL A+SGQSASF SGG+ V G Sbjct: 242 FSLLFNFGKAGIGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLSGGELPVP-VPQGLGT 300 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360 TS+ +G+ L TPTVLS RI L++ E S+ + +N +P+ R+ADTTV Sbjct: 301 TSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSINGIAVPAISTRRADTTV 360 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL G + ++ GL+ + +PLL +PILG+ F+ +++ E E+ I TP LVK Sbjct: 361 ELGDGESFIIGGLVSRTTTSNADKVPLLGDLPILGSFFKQNKYQMSEKELVILVTPHLVK 420 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 P+A P Y + V + Y A+ + Sbjct: 421 PIARGTDLAP---YLPGTAEQR--DGAVWRSYFLGGAAGTAVPGFS 461 >gi|187478776|ref|YP_786800.1| pilus assembly protein [Bordetella avium 197N] gi|115423362|emb|CAJ49896.1| putative pilus assembly protein [Bordetella avium 197N] Length = 426 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 95/391 (24%), Positives = 149/391 (38%), Gaps = 34/391 (8%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 + + ++ + + + +L P V + V + + LF + G + Sbjct: 21 SPAYSAARTQHELVLEVGETRVLDAPG-VTRIAVGSGQVVQAQAVDGKEVILFARKEGVS 79 Query: 98 NVILI-GHDGKQMLNLDILIERD--IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 +V + G G + L ++ I L + + V V +V+ G Sbjct: 80 SVHVWRGQSGVRAYALRVMPAGFGHIRAEVEQLLAAMPALRLSV--VGHHLVIEGSGLPD 137 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 D QR L++ + + E V L V + E+ R L ++G Sbjct: 138 HDKQRISALAQRYPEVLDLTGD-------------VGWEQMVLLDVQVVELPRARLTELG 184 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S+ S P +S A +G S L AL + LA Sbjct: 185 MHWSMGAEGSHPVRSHAGVWGSLQWSGAA------------IGARLQALAQRGEAVFLAR 232 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L A SG +ASF +GG+ Y + S YGV L TP + G I I+ Sbjct: 233 PRLLARSGSAASFLAGGEVPY---RGAESEASTVFKPYGVSLKITPRIDPRGTIRSHIEV 289 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 E S + P+ R R+A+T +PSG T+VL G L ++ G+P LS IP+L Sbjct: 290 ESSSIDPTLTVPAGPAMRTRRAETEFNVPSGQTLVLGGFLGRELSSETRGVPWLSDIPVL 349 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR 425 G LF R +TE+ I TP +V+P Sbjct: 350 GLLFGERRQQNRDTELAIFVTPTIVRPDDPA 380 >gi|170725113|ref|YP_001759139.1| type II and III secretion system protein [Shewanella woodyi ATCC 51908] gi|169810460|gb|ACA85044.1| type II and III secretion system protein [Shewanella woodyi ATCC 51908] Length = 436 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 162/392 (41%), Gaps = 32/392 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + + V + +V+ ++V + V + + L ++ G +V L DGK + Sbjct: 28 LKLYMGAVELYNAK-NVERIVVGNGKVLSAKVIDDKGVLLIAESPGNTDVQLWQKDGKLI 86 Query: 110 L-NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 ++ + + + + + A +I+V +++ G + ++ + E Sbjct: 87 KLSISVTPDNSLKTTDTIKKMLAAFPSIKVTENDGLIIVQGEA-DLSQKEQLETIIEADP 145 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGP 226 + +Y + + ++V I E + L IG + S+ G + G Sbjct: 146 NVVSLIKYLKFAK---------TMAPMIKMQVKIVEFNKSTLNNIGIKWESSMAGPAYGA 196 Query: 227 SKSFAADFGGKFVSEGG-----------------DFSVKGVLDRFSFETVLHALERATAI 269 +K+F+A+ S G + + L Sbjct: 197 AKAFSANPIFSVSSPGQYSETITSAITDSIGVLDTRGWNYFGIVTGIGSQIQLLSEKGDA 256 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 R LAEP LT SG+SA+F +GG+ ++V S GA V +YG+ L P V I Sbjct: 257 RMLAEPNLTTRSGESANFLAGGEFPIRSV-SGLGAVDVEYKEYGIKLDIEPVVDDDLNIV 315 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 R+ EVS V +P R+ ++ + + + TIV++GL+ ++ ++ PLL Sbjct: 316 SRVMAEVSSIDPSVAVDGIPGMLTRRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLG 375 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421 IPILG LF++ F ++E+ I TP +V P Sbjct: 376 DIPILGELFKSRDFKDNKSELVIFVTPTVVYP 407 >gi|92113782|ref|YP_573710.1| type II and III secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91796872|gb|ABE59011.1| type II and III secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 483 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 94/429 (21%), Positives = 162/429 (37%), Gaps = 51/429 (11%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + + + L V + D A + R + L G G ++ + Sbjct: 61 AQQGESTLRLDIGDQQRLVFERPVSRTALGDGDIASAQMVDARQLLLTGLAAGTTSLSVW 120 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 + + A +S + +DT L G ++ +A Sbjct: 121 RDGRDAPQRYRVSVRPRGARGM--------ESEYTLADGTDTPTLAGESESLARHAQA-- 170 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + + ++ G QV + + EV R L+ GF Sbjct: 171 -------------RSRLGDQNTVDATRQTGPVQVQTDIRVVEVNRSKLQSAGFFFGKNNG 217 Query: 223 SS-------------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + S+ F+ G F + G +++ S V+ AL Sbjct: 218 GNTLIGVGTSGALGGAEAVGDSFSEGFSFLTGSGFQTGNGGYNIVVGNANDSVLGVISAL 277 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 TLAEP+L +SGQSASF +GG+ + VS+ G + ++GV L TPTVL Sbjct: 278 RSNGFAYTLAEPSLVTLSGQSASFLAGGEFPFP-VSNDDGDVRIDFKEFGVRLQLTPTVL 336 Query: 324 SPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 I L++ EVSE + +P+ VR+ DT+V+L G +++++GL+ + Sbjct: 337 DSNSIMLKVAPEVSELDFTQGVEASGVAVPALNVRRTDTSVQLGDGESLIISGLVSNSTM 396 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS-- 435 Q + P L +P++GA FR++RF + E+ + TP LV P+A P + Sbjct: 397 QTVDKFPGLGDLPVIGAFFRSTRFETQNKELVMIVTPHLVAPMAAGAPRPELPGEALRRY 456 Query: 436 VEDDAKAFF 444 + F Sbjct: 457 DPSYLELLF 465 >gi|73539231|ref|YP_299598.1| type II and III secretion system protein [Ralstonia eutropha JMP134] gi|72122568|gb|AAZ64754.1| type II and III secretion system protein [Ralstonia eutropha JMP134] Length = 469 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 93/440 (21%), Positives = 171/440 (38%), Gaps = 57/440 (12%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 T+++ L ++ A + A + + + ++ ++ Sbjct: 21 MKTLLAAMLATAMLVTAIPRATAQEAAPAPS----------TLRLMAGAQKEIRPAQPIE 70 Query: 68 DVLVSDPTKADVVVHSPRT----MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V V +P AD ++ R+ + + K G ++++ G + ++ Sbjct: 71 RVAVGNPAVADALLIKQRSGPPGVLVVAKQPGVTDLMIWPR-GAAQQTYTVQVDAITPDT 129 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 +NI V T+ G R + + + Sbjct: 130 --------GGANIAYSAVGATI--TGQSRDAYAA----------ARAQTAARVGSGKGGV 169 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------GP 226 V++ + + V + V + E+ + +LK++G S G Sbjct: 170 VVDRSTVPVSNTVQVDVKVVEISKTVLKEVGINFFRNNSGFAFGSFSPSTLSKFTFTPGT 229 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + + F++ F + LE R LAEP+L A+SGQSAS Sbjct: 230 GGANGSFSADITTPISNAFNLVAASLSHGFFANISLLEANGLARVLAEPSLVALSGQSAS 289 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---- 342 F SGG+ V + G T++ +G+ L +PTVLS RI L++ E S+ Sbjct: 290 FLSGGEIPIP-VPQALGTTTIQFKPFGIGLTVSPTVLSDQRIALKVAPEASDLDPSRGIA 348 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +N +P+ R+ADTT+EL G + V+ GL+ + +P L +P++G F+N Sbjct: 349 INGAIVPAIVTRRADTTIELGDGESFVIGGLVSRNTVSNVNKVPFLGDLPVIGPFFKNLN 408 Query: 403 FNREETEIFIAATPFLVKPV 422 F++E+ E+ I TP LVKP+ Sbjct: 409 FHQEDRELMIVVTPRLVKPL 428 >gi|33593025|ref|NP_880669.1| putative type II secretion system protein [Bordetella pertussis Tohama I] gi|33563400|emb|CAE42276.1| putative type II secretion system protein [Bordetella pertussis Tohama I] gi|332382437|gb|AEE67284.1| putative type II secretion system protein [Bordetella pertussis CS] Length = 449 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 110/423 (26%), Positives = 177/423 (41%), Gaps = 41/423 (9%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILI 102 +++ + + L++ V ++DP ADV V P + L G+ G + + Sbjct: 40 RELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVW 99 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 + + + + ++ L R +V+M D+ V+ GM + + Sbjct: 100 SRGSRDPQVWTVRV---LPQVQAALARRGVGGGAQVDMAGDSGVVTGMAPSAEAH----- 151 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + A + KV+++ I V ++V + E+ R ++K +G Sbjct: 152 -----RGAAEAAAAAAGGNDKVVDMSQINTSGVVQVEVKVVELARSVMKDVGINFRADSG 206 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S D G F L L+ R LAEPTL A+SG Sbjct: 207 PWSGGVSLLPDL------ASGGMFGMLSYTSRDFSASLALLQNNGMARVLAEPTLLAMSG 260 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 QSASF +GG+ VS+ G TSV +G+ L TPTV+S RI L++ E SE Sbjct: 261 QSASFLAGGEIPIP-VSAGLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYA 319 Query: 343 VNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + P+ R RKADT VEL G T V++GL+ + +PLL +PI Sbjct: 320 NGISSIDSNNRITVIPALRTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPI 379 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKA-----FFFNR 447 +GA FRN ++++E+ E+ I TP LV+P+A L P DA + Sbjct: 380 IGAFFRNVQYSQEDRELVIVVTPRLVRPIARGVTLPLPGAR-QEVSDAGFNAWGYYLLGP 438 Query: 448 VNK 450 ++ Sbjct: 439 MSG 441 >gi|33596969|ref|NP_884612.1| putative type II secretion system protein [Bordetella parapertussis 12822] gi|33600811|ref|NP_888371.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] gi|33566420|emb|CAE37673.1| putative type II secretion system protein [Bordetella parapertussis] gi|33568411|emb|CAE32323.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] Length = 448 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 110/423 (26%), Positives = 177/423 (41%), Gaps = 41/423 (9%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILI 102 +++ + + L++ V ++DP ADV V P + L G+ G + + Sbjct: 39 RELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVW 98 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 + + + + ++ L R +V+M D+ V+ GM + + Sbjct: 99 SRGSRDPQVWTVRV---LPQVQAALARRGVGGGAQVDMAGDSGVVTGMAPSAEAH----- 150 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + A + KV+++ I V ++V + E+ R ++K +G Sbjct: 151 -----RGAAEAAAAAAGGNDKVVDMSQINTSGVVQVEVKVVELARSVMKDVGINFRADSG 205 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S D G F L L+ R LAEPTL A+SG Sbjct: 206 PWSGGVSLLPDL------ASGGMFGMLSYTSRDFSASLALLQNNGMARVLAEPTLLAMSG 259 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 QSASF +GG+ VS+ G TSV +G+ L TPTV+S RI L++ E SE Sbjct: 260 QSASFLAGGEIPIP-VSAGLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYA 318 Query: 343 VNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + P+ R RKADT VEL G T V++GL+ + +PLL +PI Sbjct: 319 NGISSIDSNNRITVIPALRTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPI 378 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKA-----FFFNR 447 +GA FRN ++++E+ E+ I TP LV+P+A L P DA + Sbjct: 379 IGAFFRNVQYSQEDRELVIVVTPRLVRPIARGVTLPLPGAR-QEVSDAGFNAWGYYLLGP 437 Query: 448 VNK 450 ++ Sbjct: 438 MSG 440 >gi|323525746|ref|YP_004227899.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] gi|323382748|gb|ADX54839.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] Length = 474 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 108/481 (22%), Positives = 180/481 (37%), Gaps = 51/481 (10%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 + + + ++ + G + + I + L ++ V + DP+ ADV+V Sbjct: 1 MTALLCGASMAVSPAGFAAGGAQALDIVVGSQQSLASGHTLRRVAIGDPSVADVLVIRGD 60 Query: 86 T---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142 + L GK+ G NV+L L+ + + A + + V+++ Sbjct: 61 RTGGVLLIGKSPGSTNVMLWEQGKDAPLSYVVNVSSPAA------KSLLGPDTPSVKVLG 114 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-------- 194 DT ++ G T++ QRAV + Q A + A Sbjct: 115 DTALISGSAPTMEAHQRAVAAAGIEAHQRATLGSAAKGGTGGKAGVASALAGADAANGGA 174 Query: 195 -------QVTLKVTIA------------EVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 Q+ T+A E R +LKQ+G + + Sbjct: 175 SGGESGTQIYDSSTVATRSVVQVDVRVVEFSRTVLKQVGLNILKQNNGFTFGSFAPSALS 234 Query: 236 GKFVSEG----------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 F++ L +E R LAEPTL A+SGQSA Sbjct: 235 SATYGATPTFNSVAPISSAFNLVFNSATHGLFADLSLMESNNLARILAEPTLVALSGQSA 294 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----I 341 SF +GG+ + G TS+ YGV L TPTVLSP RI L++ E S+ + Sbjct: 295 SFLAGGEIPVP-IPQGLGTTSIEYKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAV 353 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 ++ +P+ R+ DTTVEL G + V+ GL+ + +PLL +P++GA F+ Sbjct: 354 TISGVSVPAITTRRTDTTVELGDGESFVIGGLIDRETISNVAKVPLLGDLPVIGAFFKQL 413 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + + + E+ I TP LV P+A E + + + + A Sbjct: 414 NYQQNDKELVIIVTPHLVSPLAKGATLPATPGEQSEQRNAPVWRSLLGGVAARDAAPGFS 473 Query: 462 G 462 Sbjct: 474 K 474 >gi|296158514|ref|ZP_06841344.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] gi|295891082|gb|EFG70870.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] Length = 590 Score = 223 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 85/443 (19%), Positives = 167/443 (37%), Gaps = 28/443 (6%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 +R +++ L A A +D + + + +V IL +P Sbjct: 11 RRRILPSVLVGMLLC---------EAVPAALAQAAATDSLSAGTRVLEMFRGEVRILHIP 61 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 ++ + + + V ++ L G+ G ++++ G + + + ++ Sbjct: 62 GTIKRIAIGNGKLLTANVVDG-SLMLLGEQDGITSLVVWNDKGIALQTTVRIAKAEVNAS 120 Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 LR + + +R++ + ++VL G++ + + + + + Sbjct: 121 LEQLRAVLKSVAGLRIDAIGSSIVLSGVI-----HRDMAGIVKAATQDMKNVVDTTTVDE 175 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 A V KV I EV R + +G + + G Sbjct: 176 GD------ALRKTVHFKVQIMEVTRTGQRNLGIAWDSAFKGPQIGGAASVATGAAKAVTA 229 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G + + + ++ LA P L SG +ASF +GGQ + Sbjct: 230 GTSYFLAGIAS-NITSQINFAVENGDAYVLAAPELNTKSGGTASFLAGGQVPIPQS-GAL 287 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 G TS+ DYG+ L P V + I + TE+S+ V MP + R + + + Sbjct: 288 GTTSIEYKDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYAGMPGFLTRNTSSDISM 347 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +G T+ ++GL+ D G+P LS++PI+G LFR+ F +++++ I TP + P Sbjct: 348 RAGETLAISGLVSADAANGSNGMPFLSQVPIIGQLFRSDSFRAKKSDLVIFVTPVISDP- 406 Query: 423 AMRDLSRPDDHYSVEDDAKAFFF 445 +LS D + D F Sbjct: 407 ---ELSPNTDLLARADKLDENFR 426 >gi|254479855|ref|ZP_05093103.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2148] gi|214039417|gb|EEB80076.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2148] Length = 677 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 92/498 (18%), Positives = 174/498 (34%), Gaps = 74/498 (14%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 L + L P A + +NA +I+ I + K I +++ + + Sbjct: 132 RLDNISAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDVSANIDRIKDIIQRMDRSAVQKT 191 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN----VILIGHDGKQMLNLDILIER 118 + V+D A + + K G A ++ +++ D + Sbjct: 192 DIIKLRYAVADDVVAMLDKLNKSE----AKQSGGAEPEVLLVADSRTNSVLVSGDEMERA 247 Query: 119 DIAHLEMTLRRFIADS-NIRV------EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 ++ L L + S N+RV E VL +++ I + A ++ +++ Sbjct: 248 RMSQLIKHLDTPLEQSGNVRVVYLEYAEAKEIAEVLTRVMQNINSLENADGKAQRSNAKT 307 Query: 172 GRNQYANS--------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 + + + V++ L+I QV ++ I E+ + +G Q Sbjct: 308 ATIEADEGTNSLIITAETDEMAAIESVIHRLDIR-RAQVLVEAIIVEMTFSEGQDLGLQW 366 Query: 218 SITGSSSGPSKSFAADF--------------------------------GGKFVSEGGDF 245 + SG S G + G Sbjct: 367 LFANTDSGFYGSNINSPSQAQQLAGALNPDNGDEATPSNDSEFDVGALAGALASTPGLSL 426 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302 V D + +L+AL+ L+ P+L + Q A T G + T S + Sbjct: 427 GWGSVDDDLTMTVILNALKTQGNANILSTPSLLTLDNQEAFITVGQNVPFITGSYTNSGS 486 Query: 303 ------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRV 353 ++ + G+ L TP + + L I+ EVS +IG + + Sbjct: 487 SDGASNPFQTIERENVGITLAVTPHINEGDSVVLEIEQEVSNVIIGASQISEAADIITSE 546 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 RK T V +VL GL++D++Q ++ +P+L IP LG LFR + +T + I Sbjct: 547 RKIQTKVLAQDSKVVVLGGLIEDNVQDGQQKVPILGDIPFLGRLFRTDSVDVSKTNLLIF 606 Query: 414 ATPFLVKPVAMRDLSRPD 431 P +++ A D + D Sbjct: 607 IRPTIIRDNAQLDGATAD 624 >gi|330953053|gb|EGH53313.1| type II and III secretion system protein [Pseudomonas syringae Cit 7] Length = 416 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 97/461 (21%), Positives = 164/461 (35%), Gaps = 81/461 (17%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L + + A P A + + I ++ V + + V DP Sbjct: 12 SLLALVIA-ALCAPGAWAASGSCAGLAAMPAA---VEIDQGIQQEVRSAVPITRIAVGDP 67 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 ADV V+ L G G ++++ R+ + Sbjct: 68 KIADVHVNGTDGFLLTGVAQGTTSLMVW------------------TACASAPRQSM--- 106 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 V + G T ++ L Sbjct: 107 ----------VFVRGRATTAMVESVTAPSADAQL------------------------PS 132 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------ 242 QV + EV R LK+ GS++ + G Sbjct: 133 QVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTPGTVSGTRPNIPLNN 192 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 +F++ +++A+E + TLA P+L A++GQSASF +GG+ + Sbjct: 193 SNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEG 252 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADT 358 S+ ++GV L TPTV+ RI L++ EVSE I + +P+ +R+ DT Sbjct: 253 NGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDT 312 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 ++ L G + V++GL+ + P L IPILGA FR+S+ R+E E+ + TP L Sbjct: 313 SIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHL 372 Query: 419 VKPVAMRD--LSRPDDHYS--VEDDAKAFFF--NRVNKIYG 453 V+P+A S P + + +F ++ G Sbjct: 373 VQPLAANARLPSLPGEGLRTYDPSFPRLYFLENGDFDRRDG 413 >gi|330895618|gb|EGH27925.1| type II and III secretion system protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 416 Score = 219 bits (558), Expect = 8e-55, Method: Composition-based stats. Identities = 97/460 (21%), Positives = 163/460 (35%), Gaps = 81/460 (17%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + + A P A + + I ++ V + + V DP Sbjct: 13 LLALVIA-ALCAPGAWAASGSCAGLAAMPAA---VEIDQGIQQEVRSAVPITRIAVGDPK 68 Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 ADV V+ L G G ++++ R+ + Sbjct: 69 IADVHVNGTDGFLLTGVAQGTTSLMVW------------------TACASAPRQSM---- 106 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 V + G T ++ L Q Sbjct: 107 ---------VFVRGRATTAMVESVTAPSADAQL------------------------PSQ 133 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGG 243 V + EV R LK+ GSS+ + Sbjct: 134 VQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNS 193 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 +F++ +++A+E + TLA P+L A++GQSASF +GG+ + Sbjct: 194 NFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGN 253 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359 S+ ++GV L TPTV+ RI L++ EVSE I + +P+ +R+ DT+ Sbjct: 254 GISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTS 313 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G + V++GL+ + P L IPILGA FR+S+ R+E E+ + TP LV Sbjct: 314 IALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLV 373 Query: 420 KPVAMRD--LSRPDDHYS--VEDDAKAFFF--NRVNKIYG 453 +P+A S P + + +F ++ G Sbjct: 374 QPLAANARLPSLPGEGLRTYDPSFPRLYFLENGDFDRRDG 413 >gi|317403496|gb|EFV84000.1| hypothetical protein HMPREF0005_03138 [Achromobacter xylosoxidans C54] Length = 458 Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 109/474 (22%), Positives = 182/474 (38%), Gaps = 35/474 (7%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 L + A + + A + + I++ + L + Sbjct: 1 MMRFQRTTLICVLSAAAAMTCGAASLAQTAPAAGA-SAPARDIAVAVKGQQALMLDGAPV 59 Query: 68 DVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 + + DP ADV V + ++ L+GK G + + + + ++ Sbjct: 60 RIAIGDPDVADVKVLAASGKRQASVLLYGKKAGTTQLQIWTGANAAPQVWTVRVAGNVQQ 119 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + M R +N+ V + V+ G + Q +V + + + + S Sbjct: 120 V-MAGRGVAGGANVDV--AGERAVVSGQAESPLTHQASVAAAGAAVGDKNVVDVSTAGSG 176 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGKF 238 V+ + E R ++KQ G + G + S D G Sbjct: 177 GVVQVEVKVVEV-----------SRSVMKQAGISFAGRSGPWGSTNSITPDGFPAPLGFN 225 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 D F L L+ R LAEPTL A++GQSASF +GG+ Sbjct: 226 KGAALASGFSLFYDSNDFSARLRLLQNNGMARVLAEPTLVALTGQSASFLAGGELPIPEA 285 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMP 349 G T+VT +G+ L TPTVLS RI L++ E SE + +P Sbjct: 286 -GGLGTTTVTFKPFGIGLTVTPTVLSRERIALKVAPEASELDYSNAIAVSNGTNSTTLIP 344 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R R+ADTTVEL G + V++GL+ + L +P+L +PI+G+ FR+ + +E+TE Sbjct: 345 ALRTRRADTTVELGDGESFVVSGLVSRQTRALVNKVPMLGDLPIIGSFFRSVDYTQEDTE 404 Query: 410 IFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 + I TP LV+P+A L P D A + + G ++ Sbjct: 405 LVIVVTPRLVRPIARGVTLPLPGAKQEAADTAFNAWGYYLMGPVGGQQMPGFSR 458 >gi|70734199|ref|YP_257839.1| type II/III secretion system protein [Pseudomonas fluorescens Pf-5] gi|68348498|gb|AAY96104.1| bacterial type II/III secretion system protein [Pseudomonas fluorescens Pf-5] Length = 417 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 98/440 (22%), Positives = 168/440 (38%), Gaps = 76/440 (17%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 +A AA + + IG LQ V + + V DP ADV + L Sbjct: 24 QALAAAVAGCSSLAPLPAALEIGEGLQQELQSAVAITRLAVGDPKIADVQTTGNKAFLLT 83 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G G ++++ Sbjct: 84 GMAPGATSLMVWTACASTP----------------------------------------- 102 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 ++++ + + +S ++ QV + EV R L Sbjct: 103 -------RQSMVFVQGRATADMSTGRLPASDDPLL-------PSQVQTDIRFVEVSRTKL 148 Query: 211 KQ-----IGFQHSITGSSSGPSKSFAADFGGKFVSEGG--------DFSVKGVLDRFSFE 257 K+ G H+ + G + G + GG + + Sbjct: 149 KEASVSIFGRGHNFLFGAPGTAPVTGGTSGSVTPTFGGRRTNIPLDNGTFNIGFGNGRVL 208 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 T+++ALE + TLA P+L A+SGQSASF +GG+ S+ + + ++ ++G+ L Sbjct: 209 TLINALEGSGFAYTLARPSLVALSGQSASFLAGGEIPIPVPSTGSNSVTIEYKEFGIRLT 268 Query: 318 FTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 TPT++ GRI L++ EVSE + + +P+ VR+ DT++ L G + V++GL Sbjct: 269 LTPTIVDRGRISLKVAPEVSELDYSNAVTIAGTQVPALTVRRTDTSISLADGESFVISGL 328 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPD 431 + + P L IP+LGA FR++ NREE E+ + TP LV+P+A + P Sbjct: 329 ISTNNSSQVNKFPGLGDIPVLGAFFRDTTINREERELLMVVTPHLVQPLAADAKLPALPG 388 Query: 432 DHYS--VEDDAKAFFFNRVN 449 + + + FF N Sbjct: 389 ERLRNYDPNFYRMFFLENGN 408 >gi|330976799|gb|EGH76834.1| type II and III secretion system protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 416 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 97/460 (21%), Positives = 163/460 (35%), Gaps = 81/460 (17%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + + A P A + + I ++ V + + V DP Sbjct: 13 LLALVIA-ALCAPGAWAASGSCAGLAAMPAA---VEIDQGIQQEVRSAVPITRIAVGDPK 68 Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 ADV V+ L G G ++++ R+ + Sbjct: 69 IADVHVNGTDGFLLTGVAQGTTSLMVW------------------TACASAPRQSM---- 106 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 V + G T ++ L Q Sbjct: 107 ---------VFVRGRATTAMVESVTAPSADAQL------------------------PSQ 133 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGG 243 V + EV R LK+ GSS+ + Sbjct: 134 VQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNS 193 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 +F++ +++A+E + TLA P+L A++GQSASF +GG+ + Sbjct: 194 NFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGN 253 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359 S+ ++GV L TPTV+ RI L++ EVSE I + +P+ +R+ DT+ Sbjct: 254 GISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTS 313 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G + V++GL+ + P L IPILGA FR+S+ R+E E+ + TP LV Sbjct: 314 IALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLV 373 Query: 420 KPVAMRD--LSRPDD--HYSVEDDAKAFFF--NRVNKIYG 453 +P+A S P + + +F ++ G Sbjct: 374 QPLAANARLPSLPGEALRTYDPSFPRLYFLENGDFDRRDG 413 >gi|237653358|ref|YP_002889672.1| type II and III secretion system protein [Thauera sp. MZ1T] gi|237624605|gb|ACR01295.1| type II and III secretion system protein [Thauera sp. MZ1T] Length = 479 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 98/443 (22%), Positives = 170/443 (38%), Gaps = 39/443 (8%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 +R ++ L P A+AA + +I + + +L Sbjct: 12 RRRALPPLVCAILILGLP--GPSRAAPPASAAPPEPGRAALAVVHEIQMFAGETRVLP-Q 68 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D Q + V D V R + L G + + G+ + + D A + Sbjct: 69 RDAQRLAVGDAKVLSAAVLDDREILLIANGPGDTMLQVWTRSGRSQRIKITVRQTDTARI 128 Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L+ F+ D +R + D VV+ G + + + EL++ F Sbjct: 129 ARDLQGFLHDVPRLRTRTIGDNVVIEGEGLSDAERDKVTELAKRFPQLIDFTS------- 181 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + + V E+ R L+ +G + G + Sbjct: 182 ------RVGLDRMFAFDVRFVEISRSGLRDLGIDWTTQGKPLLGIGVIGDLYHDNRTGAT 235 Query: 243 GDFSVKGVLDR--------------------FSFETVLHALERATAIRTLAEPTLTAISG 282 ++ SF L+ L + LA P L+A + Sbjct: 236 VTRTLGSGELSSEVEIEANRVSPFAANVALVGSFFGRLNLLAQKGDAVILASPRLSARNR 295 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVI 341 ASF +GG+ V+S+TG SVT +YG+ L+ P + G I RI+TEVS Sbjct: 296 GEASFLAGGEIPVP-VASATGTPSVTFKEYGIRLNILEPVADAAGTIRARIRTEVSSLDR 354 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 V A +P R+ +T L +G T+VL+G+L+ + Q + +P L ++P++G LFR++ Sbjct: 355 SVAAQGVPGLLSRRTETEFNLRNGETLVLSGVLQREQQSDENALPHLGELPVIGRLFRST 414 Query: 402 RFNREETEIFIAATPFLVKPVAM 424 RFN E+E+ + TP+L++P Sbjct: 415 RFNSRESELVVFVTPWLLEPGEG 437 >gi|317403407|gb|EFV83920.1| hypothetical protein HMPREF0005_02046 [Achromobacter xylosoxidans C54] Length = 453 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 100/444 (22%), Positives = 166/444 (37%), Gaps = 35/444 (7%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + G+ + + + + +L V V + D + R + +F + G ++ Sbjct: 17 AARSAWPAGQTLEMQVGESRVLAESG-VTRVAIGDSQVLSAIATDSREVVVFARTEGVSS 75 Query: 99 VILIGHDGKQMLNLDILIE--RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 + + G Q ++ + + L I + + V VV+ G + D Sbjct: 76 IQVWADGGVQAYDVHVAAAGVTRLRAEVDALLARIPGARSSL--VGGRVVVEGDDLSDDD 133 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 R L+E + + + V L V + E+ R L++IG + Sbjct: 134 HARIAALAEHYPEVMDFTG-------------RVGWDSMVQLDVQVVEMPRSRLREIGVR 180 Query: 217 H-SITGSSSGPSKSFAADFGG--------KFVSEGGDFSVKGVLD-RFSFETVLHALERA 266 +T ++ A G + SV G + AL ++ Sbjct: 181 WEGLTQGGVNAGLAWDAGSLGRMARPGEAVIDTPAPVSSVAGYFGVNALLSARIAALAQS 240 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LA+P L A SG SA+F +GG+ Y + S T++ YGV L TP + G Sbjct: 241 GEAVMLAQPQLLARSGASATFLAGGEVPYVSTDSRGNPTTL-FKPYGVSLRITPRIDRNG 299 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I I+ E S + + P+ R R+A T + SG T+V+ G L + G+P Sbjct: 300 VIRSLIEVEASSVDMALTGASGPALRTRRASTEFNVRSGDTLVIGGFLSRERADDSSGLP 359 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 L IPILGALF + R+ ETE+ I TP +V D D F Sbjct: 360 GLKDIPILGALFASRRYQLRETELAIFVTPRIVSRNEPAM----TDRVRRGRDVIRAAFP 415 Query: 447 RVNKIYGPKEASEVEGQNYKGAIG 470 +++ E + G N G G Sbjct: 416 EPSRL--GTEVPVMAGWNIHGGKG 437 >gi|221066739|ref|ZP_03542844.1| type II and III secretion system protein [Comamonas testosteroni KF-1] gi|220711762|gb|EED67130.1| type II and III secretion system protein [Comamonas testosteroni KF-1] Length = 467 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 97/453 (21%), Positives = 161/453 (35%), Gaps = 72/453 (15%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINI----SDVEIGKGKKISIGLNKVIILQVPV 64 FT + + + + A + A A + G + + + +L + Sbjct: 7 FTALGLASSAILSTFATSAMAQTAAADNVRAGVVSVATPTGAASPLPLTMGSQHVLLPAM 66 Query: 65 DVQDVLVSDPTKADVVVHSPR------TMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 + + V DP DV V + L K G + + G + + + Sbjct: 67 PLARLAVGDPNVLDVKVLRSTGNSSAPELLLTPKAPGSTTLSIWSTRG-LSQSWQVEVSS 125 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 L+ L A+EL+ L + + Sbjct: 126 PSLLLKKNLDSV--------------------------HDHALELASLRLKAAKDTALLD 159 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-------- 230 S V + V + V + E ++ LK+ G GS++ Sbjct: 160 RSQISV-------RSNTVQVDVQVVEFKKTALKRAGINLFSGGSNNHGFSFGMYTPGASS 212 Query: 231 ----------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + L LE R LA+ Sbjct: 213 SSGSGSSSGGSGDGGASGGSTALSSAMNLVLGFSKAFSGAGISAQLGFLEGNGLARVLAK 272 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 PTL A +GQSASF +GG+ S+S+ S+ ++GV L TPTVLS RI L++ Sbjct: 273 PTLVAHTGQSASFLAGGEIPIPVPSTSSNNISIRYKEFGVKLQLTPTVLSNERIALKVAP 332 Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 E S+ + + +P+ R+ADT VEL G + V+ GL+ +PLL Sbjct: 333 EASDLDYTSGVTIAGVAVPAIATRRADTMVELADGESFVIGGLVSRSTSSSVNKVPLLGD 392 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +PILG F+N ++++E E+ I TP LV+P+ Sbjct: 393 LPILGPFFKNLNYSQDEKELVIIVTPRLVQPLP 425 >gi|66047618|ref|YP_237459.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63258325|gb|AAY39421.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 416 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 96/460 (20%), Positives = 166/460 (36%), Gaps = 81/460 (17%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + + P A+ + ++ + + I ++ V + + V DP Sbjct: 13 LLALVIATLCAPGAWAASGSCAGLAAMPAA----VEIDQGIQQEVRSAVPITRIAVGDPK 68 Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 ADV V+ L G G ++++ R+ + Sbjct: 69 IADVHVNGTDGFLLTGVAQGTTSLMVW------------------TACASAPRQSM---- 106 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 V + G T ++ L Q Sbjct: 107 ---------VFVRGRATTAMVESVTAPSADAQL------------------------PSQ 133 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGG 243 V + EV R LK+ GSS+ + Sbjct: 134 VQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNS 193 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 +F++ +++A+E + TLA P+L A++GQSASF +GG+ + Sbjct: 194 NFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGN 253 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359 S+ ++GV L TPTV+ RI L++ EVSE I + +P+ +R+ DT+ Sbjct: 254 GISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTS 313 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G + V++GL+ + P L IPILGA FR+S+ R+E E+ + TP LV Sbjct: 314 IALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLV 373 Query: 420 KPVAMRD--LSRPDD--HYSVEDDAKAFFF--NRVNKIYG 453 +P+A S P + + +F ++ G Sbjct: 374 QPLAANARLPSLPGEALRTYDPSFPRLYFLENGDFDRRDG 413 >gi|331092898|ref|ZP_04586842.2| type II and III secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021233|gb|EGI01290.1| type II and III secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 416 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 100/453 (22%), Positives = 162/453 (35%), Gaps = 80/453 (17%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82 +A P A + N I I +Q PV + + V DP ADV V Sbjct: 19 IALSAPSAWAASGSCNGLAAMPAA---IEIDQGIQQNVQSPVAITRIAVGDPKVADVHVS 75 Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142 + L G G ++++ + Sbjct: 76 NSDGFLLTGVAQGTTSLMVWTACSSAPRQSMVF--------------------------- 108 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 VR + L+ + QV + Sbjct: 109 --------VRGRASASMVETLAAPSTDANL--------------------PSQVQTDIRF 140 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGV 250 EV R LK+ GS++ + G +F++ Sbjct: 141 IEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWG 200 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ Sbjct: 201 GGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYK 260 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGG 366 ++GV L TPTV+ RI L++ EVSE I ++ +P+ +R+ DT++ L G Sbjct: 261 EFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITISGTTVPALNIRRTDTSIALADGE 320 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP--VAM 424 + V++GL+ + P L IPILGA FR+S+ R+E E+ + TP LV+P V Sbjct: 321 SFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAVDA 380 Query: 425 RDLSRPDDHYS--VEDDAKAFFF--NRVNKIYG 453 R S P + + +F ++ G Sbjct: 381 RLPSLPGESLRNYDPSFPRLYFLENGDFDRRDG 413 >gi|113867004|ref|YP_725493.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16] gi|113525780|emb|CAJ92125.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16] Length = 478 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 95/453 (20%), Positives = 176/453 (38%), Gaps = 33/453 (7%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 P A S + I + +V L+VP ++ V + + V R Sbjct: 22 PVTTAARTGAQPPSYELPARFGAIELFKGEVRALEVPGTIRRVAIGNGALVSSTVVDGR- 80 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTV 145 + L + +G ++I+ G + + D A + LR + +++E+V +V Sbjct: 81 LLLLAEEIGTTSLIVWNERGVALQGKLRVAPADTADVAQRLRASLGSVRGLKIEVVGPSV 140 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 VL G+V + V L +T S + + A + V KV I E+ Sbjct: 141 VLSGIVDP-----QMVPLIKTATSGLDSVVNLVRADEGD------ALKKTVHFKVHIMEI 189 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFA---------------ADFGGKFVSEGGDFSVKGV 250 R ++++G + + + + A F G S + Sbjct: 190 TRRGMEKLGIAWQQSFNGPQIAFAGNPVHTGRYRTLPSTDAATFTDTPSQVAGAASGFYL 249 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + + ++ LA P L + SG A+F +GG+ + G T V Sbjct: 250 GIATTIFSRINLAISDGDAYVLAAPELNSKSGGLATFLAGGEVPIPKA-GAFGTTDVDYK 308 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 YG+ L+ P V I ++TE+S+ V+ G P++ R+ + + +G T+ + Sbjct: 309 PYGIKLNIRPAVNVDNVISTTLETEISQIDPSVSFGGFPAFLTRRTTSETSIRAGETLAI 368 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 +GL+ D + + +PLL IPILG LFR+ F ++++ I TP + P + + + Sbjct: 369 SGLVNADASKAVDKVPLLGSIPILGRLFRSDEFRNNKSDLVIFVTPVVYDPASPENAAL- 427 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 D A + +R + A+ V Q Sbjct: 428 ---LQRGADVDANYRHRFGEPSPLPAANAVREQ 457 >gi|307730006|ref|YP_003907230.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] gi|307584541|gb|ADN57939.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] Length = 490 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 101/497 (20%), Positives = 180/497 (36%), Gaps = 67/497 (13%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 + + ++ + + G +++ + + L ++ V + DP+ ADV++ Sbjct: 1 MAALVCGSSMAASPAGFAAGGAQQLELLVGSQQSLASGHTLRRVAIGDPSVADVLIIKGD 60 Query: 86 T---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142 + L GK+ G NV+L L+ + + A + + V ++ Sbjct: 61 KTGGVLLVGKSPGSTNVMLWEQGKDAPLSYVVNVSSPAA------KSLLGPGTPSVRVLG 114 Query: 143 DTVVLHGMVRTIQDSQR-------------------------------AVELSETFLSQS 171 D+ ++ G T++ QR Sbjct: 115 DSALISGSAPTMEAHQRAVAAAAIEARQRATLGTVANSAANSAAAGASVGRGGRGTAVSG 174 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA------------EVRRDILKQIGFQHSI 219 + ++ + + G+ Q+ T+A E R +LKQ+G Sbjct: 175 MSGAAGSDATNGGASFASAMGDAQIYDTSTVATRSVVQVDVRVVEFSRTVLKQVGLNILK 234 Query: 220 TGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETVLHALERATAI 269 + + F++ L +E Sbjct: 235 QNNGFTFGSFAPSALSSATYGPTPSFNSVAPISSAFNLVFNSATRGLFADLSLMESNNLA 294 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 R LAEPTL A+SGQSASF +GG+ + G TS+ YGV L TPTVLSP RI Sbjct: 295 RILAEPTLVALSGQSASFLAGGEIPVP-IPQGLGTTSIEYKPYGVGLTLTPTVLSPQRIA 353 Query: 330 LRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L++ E S+ + ++ +P+ R+ DTTVEL G + V+ GL+ + + Sbjct: 354 LKVAPEASQLDFANAVTISGVSVPAITTRRTDTTVELGDGESFVIGGLIDRETISNVAKV 413 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 PLL +P++GA F+ + + + E+ I TP LV P+A E + Sbjct: 414 PLLGDLPVIGAFFKQLNYQQNDKELVIIVTPHLVSPLAKGATLPATPGEQSEQRNAPVWR 473 Query: 446 NRVNKIYGPKEASEVEG 462 + + + A Sbjct: 474 SFLGGVAARDAAPGFSK 490 >gi|329912918|ref|ZP_08275837.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480] gi|327545493|gb|EGF30693.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480] Length = 608 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 95/435 (21%), Positives = 172/435 (39%), Gaps = 43/435 (9%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 P+V + A + +D + +I + + + + P V + V + Sbjct: 88 LKPTVRRPQVASRPYAPISPQNDQGMIP--EIEMFVGESRVFPTPG-VARIAVGNGQIMS 144 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIR 137 + + +F VG +++ + DG+ ++ D + + F+ S R Sbjct: 145 AAALDEKEVIVFANGVGTSSLFVWNADGRYQRVKVSIVPGDTTRIARDVTAFLKSMSGTR 204 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQV 196 ++ D V++ G + + + L + + +++N + E V Sbjct: 205 TSIIGDKVIIEGDNLSDVELAKIDMLEKRY--------------PQIINFTNQLGWEPMV 250 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFVSEG 242 L V + E + L+ IG + G ++ + + + S Sbjct: 251 MLDVKVVEFPTNELRDIGLKWGSVGGAAVGAIWSPGRRGTDGPYQVNIQSANAAPITSPE 310 Query: 243 GDFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G S V + L+ L + LA+P L+A SG ASF +GG+ Sbjct: 311 GSGSPVRVPGGLNVLSALNLGLNAQLNLLAQQGKASLLAQPQLSARSGTKASFLAGGEFP 370 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 Y + + +V YG+ L P V G I I EVS+ V+ P+ + R Sbjct: 371 YSVATING--VTVQFKPYGIKLDILPKVDRNGVIRATIDAEVSKIDASVSTVVGPALQTR 428 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 K T + +G TIVLAG+L+ D + +PLL +P+LGALFR+ RF +ETE+ + Sbjct: 429 KTKTEFNVLAGDTIVLAGMLQADNSTSIDKVPLLGDVPVLGALFRSKRFENKETELVVFV 488 Query: 415 TPFLVKPVAMRDLSR 429 TP +V + + R Sbjct: 489 TPTIVDSRSPALIER 503 >gi|319791194|ref|YP_004152834.1| type II and iii secretion system protein [Variovorax paradoxus EPS] gi|315593657|gb|ADU34723.1| type II and III secretion system protein [Variovorax paradoxus EPS] Length = 532 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 88/438 (20%), Positives = 163/438 (37%), Gaps = 34/438 (7%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ + ++ ++++P V V + + + V M + ++ G + + + +G Sbjct: 96 LTLYVGQMALVKMPG-VSRVAIGNGKVMEARVLDGANMLITAQDAGDSTLHVWDKNGTVR 154 Query: 110 LNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + D+ + LR S + + + + +++ G +R +++ + Sbjct: 155 KLKVRVNVADLERIADELREITRGISGVNIRRIGERIIMDGNSLDPAAVERLNTVAQLYA 214 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 A+ I + V ++V I E + L +G + +G Sbjct: 215 PAVVSLATAD----------RIRVDRMVDIQVRIVEFSKTALDDLGVRWQSSGDGFNFGL 264 Query: 229 SFAADFGGK--FVSEGGDFSVKGVLD-----------------RFSFETVLHALERATAI 269 G + +G F+ S + ++ L + Sbjct: 265 FSDIASSGSYRILPDGSAFNTSTPQGTALLGQNRRMPEAYFGIGLSLTSRINLLVQRGNA 324 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LA P L+ SG A F +GG+ S+ GA SV YGV L+ P G + Sbjct: 325 FLLASPNLSTRSGGEAKFLAGGEIPLP-ALSTQGAGSVEFKPYGVRLNIKPIADGEGNVS 383 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I TEVS V +P +R+ DT + +G TIVL+GLL + + +G+P L Sbjct: 384 GSILTEVSSIDRSVAVQGIPGLLIRRTDTEFNVKAGETIVLSGLLSRESTRSSDGVPGLR 443 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 K PI+G FR +E E+ + TP +V P R R + +E D + F Sbjct: 444 KTPIIGRAFRADNDTDKEQEVVVFITPRVVGPADSR--PRIERARELERDVGSNFGTLTE 501 Query: 450 KIYGPKEASEVEGQNYKG 467 P + G Sbjct: 502 DKSDPNGSRPPAAAADIG 519 >gi|330819176|ref|YP_004348038.1| type II and III secretion system protein [Burkholderia gladioli BSR3] gi|327371171|gb|AEA62526.1| type II and III secretion system protein [Burkholderia gladioli BSR3] Length = 564 Score = 216 bits (549), Expect = 9e-54, Method: Composition-based stats. Identities = 90/445 (20%), Positives = 172/445 (38%), Gaps = 31/445 (6%) Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84 P A + + + + + ++ ++ VP ++ + + D + V Sbjct: 26 PGAPPALAARQAEHEENATPAQHALLDLYRGEIRLIDVPGRIKRIAIGDGSLVTANVVDG 85 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSD 143 R + L + G +++ +G + + + ++ LR +A +++V Sbjct: 86 R-LMLLAEKAGVTSLVAWTANGIALNTTVRVAKGNVRETAAQLREVLAIVPDVKVIESGP 144 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----AGEDQVTLK 199 ++L G V GR + A + ++N + + A + + K Sbjct: 145 NILLTGTV---------------HRDMLGRIKAATAGVPNLVNAIAVDEGDALKKTIHFK 189 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 V I E+ R+ + +G + + A + G G + G+ + Sbjct: 190 VRIMELTRNAQENLGIEWDRKIAGPQAG---AQGYIGSQAVAGPGMVIAGI--STHIAST 244 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L+ + LA P L SG +ASF +GGQ + G T V DYG+ L Sbjct: 245 LNLMITRGDAYVLAAPELNTKSGGTASFLAGGQVPIPRA-GALGTTDVEYKDYGIKLDIK 303 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P V + I +I TE+S+ V+ G P + R A + + L +G T+ ++GL+ D Sbjct: 304 PVVDANNVISAQIDTEISQIDPSVSYGGYPGFLTRSARSDISLRAGETMAISGLVNADAI 363 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 +P L ++PI+G LFR+ F + +++ I TP + P L+ D + D Sbjct: 364 GNMSRLPFLGRLPIIGRLFRSDEFRSKRSDLVIFVTPMISDPT----LAPNTDLLARADR 419 Query: 440 AKAFFFNRVNKIYGPKEASEVEGQN 464 F R E G++ Sbjct: 420 IDRGFHQRHGDPSPLAERDRARGKD 444 >gi|71735124|ref|YP_276550.1| type II/III secretion system protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555677|gb|AAZ34888.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 416 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 99/435 (22%), Positives = 158/435 (36%), Gaps = 75/435 (17%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 ++ A + I ++ PV + + V DP ADV V+ L Sbjct: 24 QSAWAASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLT 83 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G G ++++ R+ + V + G Sbjct: 84 GVAQGTTSLMVW------------------TACATAPRQSM-------------VFVRGR 112 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 T ++ ++ QV + EV R L Sbjct: 113 ATTSMV---------------ETVPAPSADAE---------LPSQVQTDIRFIEVSRTKL 148 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFET 258 KQ G GS++ + G F++ Sbjct: 149 KQAGTSIFGKGSNNFLFGAPGTVPGVTVTPGTVSGALPSIPLAESAFNIVWGGGSSKVLG 208 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+ALE + TLA P+L A+SGQSASF +GG+ ++ S+ ++GV L Sbjct: 209 ILNALENSGFAYTLARPSLVALSGQSASFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE + +P R R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRNRILLKVAPEVSELDFTSEISIAGTTVPIIRTRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDD 432 E P L IPILGA FR+S+ R+E E+ + TP LV+P+A S P + Sbjct: 329 NTSNISTVEKFPGLGDIPILGAFFRSSKIQRDERELLMIVTPHLVQPLAANAQLPSLPGE 388 Query: 433 HYS--VEDDAKAFFF 445 + +F Sbjct: 389 GLRTYDPSFPRLYFL 403 >gi|238759122|ref|ZP_04620291.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236] gi|238702670|gb|EEP95218.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236] Length = 354 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 167/381 (43%), Gaps = 37/381 (9%) Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + + + M+ +L+ I + ++ DSNI + + D+ +L G + + Sbjct: 1 MFNRNNQPMIKTVVLVNNIINLVYQRIKVEYPDSNIEINKIGDSYILTGQAESEEAKDTI 60 Query: 161 VELSETFLSQS-----GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 + ++ N + ++N + + +QV +K+TIAEV +D + IG Sbjct: 61 ASMVGEAVNNRREIKHKDQYLNNHNYLGIINKIKLPRPNQVNVKLTIAEVTKDFSENIGI 120 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 S G S G + + T++HA+ + R LAEP Sbjct: 121 DWSSIGESVGSFQFL-------------------KFNASGISTLVHAINDDSIARILAEP 161 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L+ +SG+SASF GG+ + +T + YG+ L + V +I +++ E Sbjct: 162 NLSVLSGESASFLVGGEIPLYNT--TQNSTIIKYKPYGIKLSISAKVNEHSKIRIKVDEE 219 Query: 336 VSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 VS P+ RKA TT+EL G + +L GL+ ++ + IP + IP Sbjct: 220 VSNIGKRFNVEGGNAYPTLETRKAATTLELADGESFILGGLITKSERESLKKIPFIGDIP 279 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF-FNRVNKI 451 ILGA FRN++ ++TE+ + AT LVKP+A ++ PD + + F F R+ ++ Sbjct: 280 ILGAFFRNAQTENKQTELVVVATVSLVKPLAGTEVELPD--FMNTSTLERLFNFTRIIEV 337 Query: 452 YGPKEASEVEGQNYKGAIGFI 472 K A E + GFI Sbjct: 338 KRKKVAKEFLRKG-----GFI 353 >gi|114321311|ref|YP_742994.1| type II and III secretion system protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227705|gb|ABI57504.1| type II and III secretion system protein [Alkalilimnicola ehrlichii MLHE-1] Length = 428 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 96/414 (23%), Positives = 158/414 (38%), Gaps = 75/414 (18%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + L P V V V DP AD+ + R + L G + G +V + + Sbjct: 51 LDAGVHKRLTFPTRVTRVAVGDPDVADLEIIGDRELLLTGVDGGLTSVYVWTTCNDRPDR 110 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 +++ ++V + + +L Sbjct: 111 TLVIVSAR--------------EALQVHEAEGS------------RDQVADL-------- 136 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 QV + + EV R L+++G S+ Sbjct: 137 ---------------------PMQVQADIRLVEVSRSKLREMGGSILGRRGSANFLFGGP 175 Query: 232 ADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G G F++ F ++++ALE TLAEP+L A Sbjct: 176 GSVSGSVAPGGVGDANVGLPASDSGFNIFYGGGGSRFLSMINALEANDFAYTLAEPSLVA 235 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 +SGQSA+F +GG+ SS + ++ ++GV + FTPTV+ R+ L++ EVSE Sbjct: 236 LSGQSATFHAGGEFPVPVPSSGSDTINIRFKEFGVRVSFTPTVIDGDRLTLKVAPEVSEL 295 Query: 340 VIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 +P RVR+ DTTV L G + V++GL+ + + + P L IP+LG Sbjct: 296 DDTSGIEIAGTRVPGLRVRRTDTTVTLGDGESFVISGLVSNHMASQVDKFPGLGNIPVLG 355 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSV--EDDAKAFFF 445 A FR+SR + E+ E+ + TP LV+P+A P + + FF Sbjct: 356 AFFRSSRVSEEDRELLMIVTPHLVQPLARDAEQPPLPGEDLRDYRPSWTEQFFL 409 >gi|320322730|gb|EFW78823.1| type II/III secretion system protein [Pseudomonas syringae pv. glycinea str. B076] gi|320330485|gb|EFW86464.1| type II/III secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 416 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 99/435 (22%), Positives = 158/435 (36%), Gaps = 75/435 (17%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 ++ A + I ++ PV + + V DP ADV V+ L Sbjct: 24 QSAWAASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLT 83 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G G ++++ R+ + V + G Sbjct: 84 GVAQGTTSLMVW------------------TACATAPRQSM-------------VFVRGR 112 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 S ++ ++ QV + EV R L Sbjct: 113 AT---------------ASMVETVPAPSADAE---------LPSQVQTDIRFIEVSRTKL 148 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFET 258 KQ G GS++ + G F++ Sbjct: 149 KQAGTSIFGKGSNNFLFGAPGTVPGVTVTPGTVSGALPSIPLAESAFNIVWGGGSSKVLG 208 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+ALE + TLA P+L A+SGQSASF +GG+ ++ S+ ++GV L Sbjct: 209 ILNALENSGFAYTLARPSLVALSGQSASFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE + +P R R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRNRILLKVAPEVSELDFTSEISIAGTTVPIIRTRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDD 432 E P L IPILGA FR+S+ R+E E+ + TP LV+P+A S P + Sbjct: 329 NTSNISTVEKFPGLGDIPILGAFFRSSKIQRDERELLMIVTPHLVQPLAANAQLPSLPGE 388 Query: 433 HYS--VEDDAKAFFF 445 + +F Sbjct: 389 GLRTYDPSFPRLYFL 403 >gi|170696786|ref|ZP_02887895.1| type II and III secretion system protein [Burkholderia graminis C4D1M] gi|170138302|gb|EDT06521.1| type II and III secretion system protein [Burkholderia graminis C4D1M] Length = 479 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 109/478 (22%), Positives = 183/478 (38%), Gaps = 47/478 (9%) Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84 L + ++ ++ + G +++ I + L ++ V + DP+ ADV++ Sbjct: 9 GLTALLCGSSMAMSSASFAAGGAEQLDIAVGSQQSLAGGHTLRRVAIGDPSVADVLIIKG 68 Query: 85 RT---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141 + L GK+ G NV+L L+ + + A + + V+++ Sbjct: 69 DKTGGVLLIGKSPGTTNVMLWEQGKDAPLSYVVNVSSPAA------KSLLGPGTPSVKVL 122 Query: 142 SDTVVLHGMVRTIQDSQRA---------VELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 DT ++ G T++ RA + G A S + N + Sbjct: 123 GDTALITGAAPTMEAHHRAAAAAEIEAHQRAALGGAGGIGTADGAKSGANGGPNGSANSA 182 Query: 193 ED--QVTLKVTIA------------EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + Q+ TIA E R +LKQ+G + + Sbjct: 183 SNNAQIYDTSTIATRSVVQVDVRVVEFSRTVLKQVGLNILKQNNGFTFGSFAPSALTSAT 242 Query: 239 VSEGGDFSVKGVLDRF----------SFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 FS + L +E R LAEPTL A+SGQSASF Sbjct: 243 YGPTPSFSSVAPISSAFNLVFNSATHGLFADLSLMESNNLARILAEPTLVALSGQSASFL 302 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344 +GG+ + G TS+ YGV L TPTVLSP RI L++ E S+ + ++ Sbjct: 303 AGGEIPVP-IPQGLGTTSIEYKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTIS 361 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ R+ DTTVEL G + V+ GL+ + +PLL +P++GA F+ + Sbjct: 362 GVSVPAITTRRTDTTVELGDGESFVIGGLIDRETISNVAKVPLLGDLPVIGAFFKQLNYQ 421 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 + + E+ I TP LV P+A E + + + + A Sbjct: 422 QNDKELVIIVTPHLVSPLAKGATLPATPGEQSEQRNAPVWRSLIGGVAARDAAPGFSK 479 >gi|254523433|ref|ZP_05135488.1| type II and III secretion system protein:Transport-associated [Stenotrophomonas sp. SKA14] gi|219721024|gb|EED39549.1| type II and III secretion system protein:Transport-associated [Stenotrophomonas sp. SKA14] Length = 433 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 100/445 (22%), Positives = 180/445 (40%), Gaps = 41/445 (9%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTMYLFGKNV 94 ++ ++ + + + +P D++ V ++DP AD+V+ R L GK Sbjct: 2 LVLLAPATSVAADDLVLQAREQRPWSLPADLERVAIADPGVADIVMLRGQRQALLVGKAP 61 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G ++L + + + ++ + T S + +L G ++ Sbjct: 62 GTTTLLLWHRKQAEPQRVQVRVQSAVQGAANT-----GTSGLLFTQQDQQGLLQGSTDSV 116 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + + + L + G+ A++ S + + + + + LKQIG Sbjct: 117 LAHMQEQQTAAMALGKEGQLADASTVSSGGVVQVEVKVVE----------FNKTALKQIG 166 Query: 215 FQHSITGSSSGPSKSFAAD-----------------FGGKFVSEGGDFSVKGVLDRFSFE 257 S + F + + + Sbjct: 167 ISFQNRNGSFAYGIARPGGQLPGNTGILPGMKEGESGNESTSPISSAFRLVFGSTKGLWN 226 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 + L+ R LAEPTL A+SGQSASF +GG+ G T++T +G+ L Sbjct: 227 ADVDLLQSNGMARVLAEPTLVALSGQSASFLAGGELP-ILEPQGLGTTTITYKPFGIGLT 285 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 TPTVL+P RI L++ E S+ N +PS R+ADTTVEL G + V+ GL Sbjct: 286 VTPTVLAPNRIALKVAPEASDLDYSNSIALNGVQIPSITTRRADTTVELGDGESFVIGGL 345 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDD 432 + ++ IPLL +PI+G+ FRN + R++ E+ I TP LV+P+A +L P Sbjct: 346 VSSNVVSSVNKIPLLGDLPIIGSFFRNFDYKRQDKELVIIVTPRLVQPLARNTELPLPGA 405 Query: 433 HYSVEDDAK--AFFFNRVNKIYGPK 455 + + + ++ +++ P Sbjct: 406 REAKPNLPEWGSWLLGPISQDPVPG 430 >gi|297568753|ref|YP_003690097.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] gi|296924668|gb|ADH85478.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] Length = 406 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 90/441 (20%), Positives = 174/441 (39%), Gaps = 69/441 (15%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M L+R+ + + + ++ + + + ++ Sbjct: 1 MSILKRSVTHPLLLLTMCLAVLLPPGAVAAAPDSWRPD----------SLRLEAQSQHVI 50 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + V V+DP+ +V + S + + L G + L + + + +++ Sbjct: 51 SRDQPIIRVAVADPSIMEVEMISQQELLLTALAPGATQLRLWHQETEPEMLRVVVVP--- 107 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 D +I+V +R ++ S+RA+ S L + + ++ Sbjct: 108 -------AAPYQDYDIQVRA---------DIRVVEVSRRALRQSGVNLLKDSDSITVATT 151 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 + V+ ++ + FV Sbjct: 152 APGVLTGID-----------------------------------NQAAGLPLASDSGFVP 176 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 F++ + ++ LE TLAEP+LT +SG++ASF +GG+ Sbjct: 177 LAQAFNLVAGDAKQRLLGIISLLESNGFAYTLAEPSLTVMSGKTASFLAGGEVPIPVSHG 236 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKA 356 ++G+ S+ D+GV L TPTVL P RI + + EVSE + +P +RVR+ Sbjct: 237 TSGSVSIEYRDFGVRLQLTPTVLDPRRITIEVSPEVSELDFSAAVSTAGVTVPGFRVRRT 296 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +TTV+L G + V++GL+ ++ E +P L +PILGA F+++R + E+ + TP Sbjct: 297 ETTVQLADGESFVISGLISNENASTVEKVPFLGSLPILGAFFKSTRLQSNDKELIMVVTP 356 Query: 417 FLVKPVAMRD-LSRPDDHYSV 436 LV+P+ + P +HY Sbjct: 357 HLVRPLERGAQVPLPGEHYRD 377 >gi|213968016|ref|ZP_03396162.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato T1] gi|301383668|ref|ZP_07232086.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato Max13] gi|302059963|ref|ZP_07251504.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato K40] gi|302131629|ref|ZP_07257619.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927359|gb|EEB60908.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato T1] Length = 419 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 91/426 (21%), Positives = 155/426 (36%), Gaps = 72/426 (16%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + I ++ V + + V DP ADV V+ L G G ++++ Sbjct: 37 AAMPAAMEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGNDGFLLTGVAQGTTSLMVWT 96 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + ++V + + + + Sbjct: 97 TCASAPRQSMVFVRGRATA---------------------SMVERANAPSAEAHEAQL-- 133 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 QV + EV R LK+ GS+ Sbjct: 134 -----------------------------PSQVQTDIRFVEVSRTRLKEASISIFGKGSN 164 Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271 + + G G+F++ +L+A+E + T Sbjct: 165 NFLFGAPGTVPGVTVTPGTVSGTLPSIPLNNGNFNIVWGGGSSKVLGMLNAMENSGYAYT 224 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P+L A++GQSASF +GG+ + S+ ++GV L TPT++ RI L+ Sbjct: 225 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLK 284 Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVSE I + +P+ +R+ DT++ L G + V++GL+ + P Sbjct: 285 VAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPG 344 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443 L IPILGA FR+S+ R E E+ + TP LV+P+A+ S P + + Sbjct: 345 LGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLL 404 Query: 444 FFNRVN 449 F R N Sbjct: 405 FMERGN 410 >gi|21673269|ref|NP_661334.1| type II secretion system protein [Chlorobium tepidum TLS] gi|21646357|gb|AAM71676.1| type II secretion system protein [Chlorobium tepidum TLS] Length = 445 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 116/446 (26%), Positives = 182/446 (40%), Gaps = 58/446 (13%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 S+ + + ++ V + V V DP AD ++ SP +YL GK G N+I+ G +G Sbjct: 12 SVPEGESRVYRLAVPAKRVAVGDPAIADFIMISPSELYLSGKKTGATNLIVWGKNGNFTT 71 Query: 111 -----------------------------------------NLDILIERDIAHLEMTLRR 129 + + E I ++ L Sbjct: 72 APLVVSRNVKPIQDLLRAVLPKEHDIQLYSSGDALVLAGSVSNALAAETAIRLVKTFLGG 131 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + D + + G + S + + SG A+S +NLL Sbjct: 132 TVPDVTPEATLTKKSEAATGT--SGGTSISGMTGVASAAGMSGAATVASSGIHGFINLLK 189 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 I QV L+V IAEV + ++ +GF + G + + FVS + Sbjct: 190 IRDPQQVRLEVRIAEVSKSYMEALGFSW-----TQGVGSTAGSSLMTGFVSNATLNLLLK 244 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + A + I+ LAEPT+ A+SGQ F GG+ + GA Sbjct: 245 NSG----NLKVEADSQKNWIKMLAEPTIVAMSGQEGYFLVGGKIYTP-TPTGNGAVDYQE 299 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSG 365 YGV L FTPTVL GRI L++ EVSEP + +P+++V A TTVE+ G Sbjct: 300 RTYGVGLRFTPTVLDAGRISLKVAPEVSEPDSQFQSAGSLYNLPAFKVSAASTTVEMNEG 359 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +V+ GLLKD + + E +PLL ++P+LGALFR++ + E+ E+ + P LVK Sbjct: 360 QNLVIGGLLKDKLTETIEAVPLLGQLPLLGALFRHTSMDSEKVEVIVIVRPTLVKASDTV 419 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKI 451 P D + + F ++ Sbjct: 420 P-ELPTDRFVPPGPNRLFLEGKLQGS 444 >gi|330873641|gb|EGH07790.1| type II/III secretion system protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 416 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 94/462 (20%), Positives = 162/462 (35%), Gaps = 76/462 (16%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK-ISIGLNKVIILQVPVDVQ 67 + S+ V + +A + S + + I ++ V + Sbjct: 1 MSCCSVPAIKPGLLVLLFTALSAPSAWAASGSCAGLAAMPAAMEIDQGIQQNVRSSVAIT 60 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 + V DP ADV V+ L G G ++++ + + Sbjct: 61 RIAVGDPKIADVHVNGSDGFLLTGVAQGTTSLMVWTTCASAPRQSMVFVRGRATA----- 115 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 ++V + + Sbjct: 116 ----------------SMVERADAPSAEA------------------------------- 128 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----- 242 QV + EV R LK+ GS++ + G Sbjct: 129 ---QLPSQVQTDIRFVEVSRTRLKEASISIFGKGSNNFLFGAPGTVPGVTVTPGTVSGTL 185 Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 +F++ +L+A+E + TLA P+L A++GQSASF +GG+ Sbjct: 186 PSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPV 245 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSY 351 + S+ ++GV L TPT++ RI L++ EVSE I + +P+ Sbjct: 246 PVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPAL 305 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 +R+ DT++ L G + V++GL+ + P L IPILGA FR+S+ R E E+ Sbjct: 306 NIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELL 365 Query: 412 IAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFFNRVN 449 + TP LV+P+A+ S P + + F R N Sbjct: 366 MIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLLFMERGN 407 >gi|28871966|ref|NP_794585.1| type II/III secretion system protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28855219|gb|AAO58280.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331014708|gb|EGH94764.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 419 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 91/426 (21%), Positives = 155/426 (36%), Gaps = 72/426 (16%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + I ++ V + + V DP ADV V+ L G G ++++ Sbjct: 37 AAMPAAMEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGSDGFLLTGVAQGTTSLMVWT 96 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + ++V + + + + Sbjct: 97 TCASAPRQSMVFVRGRATA---------------------SMVERANAPSAEAHEAQL-- 133 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 QV + EV R LK+ GS+ Sbjct: 134 -----------------------------PSQVQTDIRFVEVSRTRLKEASISIFGKGSN 164 Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271 + + G G+F++ +L+A+E + T Sbjct: 165 NFLFGAPGTVPGVTVTPGTVSGTLPSIPLNNGNFNIVWGGGSSKVLGMLNAMENSGYAYT 224 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P+L A++GQSASF +GG+ + S+ ++GV L TPT++ RI L+ Sbjct: 225 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLK 284 Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVSE I + +P+ +R+ DT++ L G + V++GL+ + P Sbjct: 285 VAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPG 344 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443 L IPILGA FR+S+ R E E+ + TP LV+P+A+ S P + + Sbjct: 345 LGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLL 404 Query: 444 FFNRVN 449 F R N Sbjct: 405 FMERGN 410 >gi|119773845|ref|YP_926585.1| putative type II and III secretion system outermembrane protein, secretin [Shewanella amazonensis SB2B] gi|119766345|gb|ABL98915.1| putative type II and III secretion system outermembrane protein, secretin [Shewanella amazonensis SB2B] Length = 423 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 90/420 (21%), Positives = 167/420 (39%), Gaps = 36/420 (8%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + + + + V + ++ +V+ V+V + V + + L G++ G +++ L DG Sbjct: 12 QPLKLYVGAVELYKI-ANVERVVVGNGGVLSAKVLDEKNVILIGESEGLSDIQLWQKDGT 70 Query: 108 QMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 ++ + + T++R +A+ +I V +V+HG + ++ + Sbjct: 71 VRKLSVVVTKENAQTTVGTMKRMLAEFPSIEVTESDGVIVIHGEA-DASQRETLEKVLDG 129 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 + +Y E V ++V I E + L IG Q S Sbjct: 130 KDNILPLIKYVKYGKS---------IEPMVKMEVKIVEFNKSTLNNIGVQWENVMSGPAF 180 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDR-------------------FSFETVLHALERAT 267 + A F + + + L Sbjct: 181 GAAKAFTANPIFSVSSPGQYANSIGGAVSDAIGVLDTRGWSYFGIVTGIGSQIQLLAEKG 240 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 R LAEP LT SG++ASF +GG+ S G+ + +YG+ L+ P V + Sbjct: 241 DARMLAEPNLTTRSGEAASFLAGGEIP-IRTVSGVGSVDIQYKEYGIRLNIEPVVDADNN 299 Query: 328 IGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I R+ EVS + G P + R+ ++ + + + T+V++GL+ ++ ++ P Sbjct: 300 IVSRVMAEVSAVDPSIQLEGSAPGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFP 359 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA---MRDLSRPDDHYSVEDDAKAF 443 LL IPILG LF++ F E+TE+ I TP +V P + LSR + +AF Sbjct: 360 LLGDIPILGELFKSRNFREEKTELVIFVTPTVVYPGEDSHEKSLSRARELVDDAAKLEAF 419 >gi|330959995|gb|EGH60255.1| type II and III secretion system protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 416 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 93/466 (19%), Positives = 161/466 (34%), Gaps = 86/466 (18%) Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69 + I L + + P + A + + + I + PV + + Sbjct: 12 RWLVILLTALSMDSVWAAPGSCSTLAAMPAA---------VEIDQGIQQNISSPVAITRI 62 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 V DP ADV V L G G ++++ + + Sbjct: 63 AVGDPKIADVHVSGNDGFLLTGVAQGTTSLMVWTACSSAPRQSMVFVRGRAT-------- 114 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + + + +V Sbjct: 115 -----------------------------------ASMVETASAPSGDAQLPSQV----- 134 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------- 242 + EV R LK+ GS++ + G Sbjct: 135 -------QTDIRFVEVSRSKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTPGTVSATKPN 187 Query: 243 -----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 +F++ +L+A+E + TLA P+L A++GQSASF +GG+ Sbjct: 188 IPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPV 247 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRV 353 + S+ ++GV L TPTV+ RI L++ EVSE I + +P+ + Sbjct: 248 PNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNI 307 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+ DT++ L G + V++GL+ + P L IPILGA FR+S+ R+E E+ + Sbjct: 308 RRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMI 367 Query: 414 ATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFF--NRVNKIYG 453 TP LV+P+A S P + + +F ++ G Sbjct: 368 VTPHLVQPLAANAQLPSLPGEGLRNYDPSFPRLYFLESGDFDRRSG 413 >gi|330873797|gb|EGH07946.1| type II/III secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 384 Score = 213 bits (541), Expect = 8e-53, Method: Composition-based stats. Identities = 98/421 (23%), Positives = 156/421 (37%), Gaps = 75/421 (17%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + I ++ PV + + V DP ADV V+ L G G ++++ Sbjct: 8 QRLVEIDQGIQQEVRSPVAIPRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW---- 63 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 R+ + V + G Sbjct: 64 --------------TACATAPRQSM-------------VFVRGRAT-------------- 82 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 S ++ ++ QV + EV R LKQ G GS++ Sbjct: 83 -ASMVETVPAPSADAE---------LPSQVQTDIRFIEVSRTKLKQAGTSIFGKGSNNFL 132 Query: 227 SKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + G F++ +L+ALE + TLA Sbjct: 133 FGAPGTVPGVTVTPGTVSGALPSIPLAESAFNIVWGGGSSKVLGILNALENSGFAYTLAR 192 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P+L A+SGQSASF +GG+ ++ S+ ++GV L TPTV+ RI L++ Sbjct: 193 PSLVALSGQSASFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTLTPTVVGRNRILLKVAP 252 Query: 335 EVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE + +P R R+ DT++ L G + V++GL+ E P L Sbjct: 253 EVSELDFTSEISIAGTTVPIIRTRRTDTSIALADGESFVVSGLINTSNISTVEKFPGLGD 312 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFFN 446 IPILGA FR+S+ R+E E+ + TP LV+P+A S P + + +F Sbjct: 313 IPILGAFFRSSKIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLYFLE 372 Query: 447 R 447 Sbjct: 373 N 373 >gi|264680618|ref|YP_003280528.1| type II and III secretion system protein [Comamonas testosteroni CNB-2] gi|262211134|gb|ACY35232.1| type II and III secretion system protein [Comamonas testosteroni CNB-2] Length = 454 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 109/432 (25%), Positives = 171/432 (39%), Gaps = 35/432 (8%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 RTF L + SV P + + + ++I + + L +P Sbjct: 10 SRTFSLKPLYLLCGLSLSVVTAPVLAQQVPNTGESRAQQATAAREIKLVMGAQHELNLPG 69 Query: 65 DVQDVLVSDPTKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V+ + + D T A V + + L G + ++ Q + +++ Sbjct: 70 GVERIAIGDDTIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQR 129 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYA 177 + LR A S I + G + Q + +A V+LS L + Sbjct: 130 VE-----LRTAKASSLIEQQFA-------GELANAQSADKAKTVDLSSVQLKSNVVQVDV 177 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + + + GF I G S ++ G Sbjct: 178 KVVEFNKTQMKKVG-----------LNLFSTAPNSSGFSFGIFGRGSYGISGGSSTTGAA 226 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F++ D+ + LE R LA PTL A+SGQSA+F SGG+ Sbjct: 227 ANPLTQAFNLLMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP- 285 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRV 353 V + TG ++ YG+ L +PTVLS RI L++ E SE N+ +PS Sbjct: 286 VPAGTGMVAIQYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITT 345 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+ADTTVEL G + V+ GL+ + + +PLL IPILG LF+ F ++E+E+ I Sbjct: 346 RRADTTVELGDGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIV 405 Query: 414 ATPFLVKPVAMR 425 TP LVKP+A Sbjct: 406 VTPRLVKPLARD 417 >gi|221070074|ref|ZP_03546179.1| type II and III secretion system protein [Comamonas testosteroni KF-1] gi|220715097|gb|EED70465.1| type II and III secretion system protein [Comamonas testosteroni KF-1] Length = 454 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 105/422 (24%), Positives = 168/422 (39%), Gaps = 35/422 (8%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L + S +P + + + ++I + + L +P V+ + + D Sbjct: 20 LLCGLSLSAVTVPALAQQLPNAGESRAQQATAAREIKLVMGAQHELNLPGGVERIAIGDD 79 Query: 75 TKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 A V + + L G + ++ Q + +++ + LR Sbjct: 80 AIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQRVE-----LRT 134 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNL 187 A S I + G + Q + +A V+LS L + + Sbjct: 135 AKASSLIEQQFA-------GELANAQSADKAKTVDLSSVQLKSNVVQVDVKVVEFNKTQM 187 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 + + GF I G S S ++ G F++ Sbjct: 188 KKVG-----------LNLFSTSPNGSGFSFGIFGRGSYGSSGGSSTTGATANPLTQAFNL 236 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 D+ + LE R LA PTL A+SGQSA+F SGG+ V + TG ++ Sbjct: 237 LMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP-VPAGTGLVAI 295 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELP 363 YG+ L +PTVLS RI L++ E SE N+ +PS R+ADTTVEL Sbjct: 296 QYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATIPSITTRRADTTVELG 355 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G + V+ GL+ + + +PLL IPILG LF+ F ++E+E+ I TP LVKP+A Sbjct: 356 DGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIVVTPRLVKPLA 415 Query: 424 MR 425 Sbjct: 416 RD 417 >gi|163856388|ref|YP_001630686.1| putative outer membrane protein [Bordetella petrii DSM 12804] gi|163260116|emb|CAP42417.1| putative outer membrane protein [Bordetella petrii] Length = 458 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 160/380 (42%), Gaps = 25/380 (6%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ + + +L+ +V V V + V R + LF + G ++V + G Sbjct: 30 LTLEVGQTRVLR-HAEVTRVAVGNGQVVSAVSVDGREVVLFARQEGASSVHVWAPRGVAA 88 Query: 110 LNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + A ++ ++ + N+R +V VVL G D R L++ + Sbjct: 89 AYEVQVRPAGWALIQEEVQTLLRHIPNVRSSVVGGNVVLEGDDLADDDRARVAALAQRYP 148 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSG 225 + ++ V L V + E+ L++ G Q S G +G Sbjct: 149 RILDFTG-------------QVGWDNMVLLDVQVVEIPSARLREFGLQWDALSQGGLHAG 195 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET------VLHALERATAIRTLAEPTLTA 279 + ++ S++G+ F L AL + LA+P L A Sbjct: 196 GVWQPGSSLQLADAAQPPALSMQGMGAAGYFGVNALLSARLAALAQRGEAVMLAQPQLLA 255 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 SG +ASF +GG+ Y T + G +S YGV L+ TP + G I RI+ E S Sbjct: 256 RSGTTASFLAGGEVPYSTT-DAQGNSSTEFKPYGVSLNITPRIDRNGAIRSRIEVEASSI 314 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ P+ R R+A T + SG T+VL G L + + G+P+L IP+LGALF Sbjct: 315 DTSLSVAGGPALRTRRAVTEFNVRSGQTLVLGGFLSRERSHERSGLPVLQDIPLLGALFS 374 Query: 400 NSRFNREETEIFIAATPFLV 419 + R +ETE+ I TP +V Sbjct: 375 SRRDQHKETELAIFVTPRIV 394 >gi|302185189|ref|ZP_07261862.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae 642] Length = 416 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 92/422 (21%), Positives = 154/422 (36%), Gaps = 75/422 (17%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + I ++ V + + V DP ADV V+ L G G ++++ Sbjct: 37 AAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW- 95 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 R+ + V + G T Sbjct: 96 -----------------TACASAPRQSM-------------VFVRGRATTAMVESVTAPS 125 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 ++ L QV + EV R LK+ GS+ Sbjct: 126 ADAQL------------------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSN 161 Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271 + + G +F++ +++A+E + T Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAYT 221 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L+ Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281 Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVSE I + +P+ +R+ DT++ L G + V++GL+ + P Sbjct: 282 VAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPG 341 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDD--HYSVEDDAKAF 443 L IPILGA FR+S+ R+E E+ + TP LV+P+A S P + + + Sbjct: 342 LGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEALRTYDPSFPRLY 401 Query: 444 FF 445 F Sbjct: 402 FL 403 >gi|118581113|ref|YP_902363.1| type II and III secretion system protein [Pelobacter propionicus DSM 2379] gi|118503823|gb|ABL00306.1| type II and III secretion system protein [Pelobacter propionicus DSM 2379] Length = 386 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 91/397 (22%), Positives = 154/397 (38%), Gaps = 54/397 (13%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 + +NK +++ + + V +++P AD+++ +PR + L G +G ++I+ G++ L Sbjct: 33 QVIVNKSVLVNLKNPAERVSIANPAIADLLLITPRQIQLNGLALGATSLIVWEKGGEKPL 92 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 D+ + + + V + + + L Sbjct: 93 FFDVNVVGNTN-----------------------IDDSQQVLLQVKVAQIDKTALKNLGV 129 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 S + N++ IG + + S+SG Sbjct: 130 SFLVKNQNANG---------------------------FSNMIGAPSTSSTSASGDGTIS 162 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ S +++ V+ AL + LAEP L SGQ F +G Sbjct: 163 TANGIIDGFSSLNPYTMGITHFPSGVSAVIKALATKGMAKILAEPNLVVKSGQKGEFFAG 222 Query: 291 GQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGD 347 + + + ST S+ + GV L+F P V+ G I L + EVS + Sbjct: 223 SRIPFSVLENTGSTSTPSIRWEEVGVKLNFKPFVMESGTIALELDPVEVSNIQGTLETNG 282 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P R T+ EL G ++VLAGLL+D+ + +PLL IPILGALFR + ++E Sbjct: 283 YPVIDTRTIKTSAELRDGESLVLAGLLRDETYKSISKVPLLGDIPILGALFRTTENEQKE 342 Query: 408 TEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAF 443 TE+ TP LV P + P D + K F Sbjct: 343 TELVFFITPKLVMPEVPGVKVELPTDKQLTPEQEKEF 379 >gi|330963438|gb|EGH63698.1| type II/III secretion system protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 416 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 93/460 (20%), Positives = 161/460 (35%), Gaps = 76/460 (16%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK-ISIGLNKVIILQVPVDVQ 67 + S+ V + +A + S + + I ++ V + Sbjct: 1 MSCCSVPAIKPGLLVLLFTALSAPSAWAASGSCAGLAAMPAAMEIDQGIQQNVRSSVAIT 60 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 + V DP ADV V+ L G G ++++ + + Sbjct: 61 RIAVGDPKIADVHVNGIDGFLLTGVAQGTTSLMVWTTCASAPRQSMVFVRGRATA----- 115 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 ++V + + Sbjct: 116 ----------------SMVERADAPSAEA------------------------------- 128 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----- 242 QV + EV R LK+ GS++ + G Sbjct: 129 ---QLPSQVQTDIRFVEVSRTRLKEASISIFGKGSNNFLFGAPGTVPGVTVTPGTVSGTL 185 Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 +F++ +L+A+E + TLA P+L A++GQSASF +GG+ Sbjct: 186 PSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPV 245 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSY 351 + S+ ++GV L TPT++ RI L++ EVSE I + +P+ Sbjct: 246 PVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPAL 305 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 +R+ DT++ L G + V++GL+ + P L IPILGA FR+S+ R E E+ Sbjct: 306 NIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELL 365 Query: 412 IAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFFNR 447 + TP LV+P+A+ S P + + F R Sbjct: 366 MIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLLFMER 405 >gi|289625312|ref|ZP_06458266.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647837|ref|ZP_06479180.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867146|gb|EGH01855.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871034|gb|EGH05743.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 416 Score = 210 bits (535), Expect = 4e-52, Method: Composition-based stats. Identities = 94/432 (21%), Positives = 157/432 (36%), Gaps = 77/432 (17%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + I ++ PV + + V DP ADV V+ L G G ++++ Sbjct: 37 AAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW- 95 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 R+ + V + G + + Sbjct: 96 -----------------TSCATAPRQSM-------------VFVRGRAT----ASMIESV 121 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + QV + EV R LK+ GS+ Sbjct: 122 TAPSADAEL--------------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSN 161 Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271 + + G +F++ +L+A+E + T Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYT 221 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L+ Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281 Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVSE I + ++P+ +R+ DT++ L G + V++GL+ P Sbjct: 282 VAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPG 341 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443 L IPILGA FRNS+ R+E E+ + TP LV+P+A S P + + + Sbjct: 342 LGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLY 401 Query: 444 FF--NRVNKIYG 453 F ++ G Sbjct: 402 FLENGDFDRRDG 413 >gi|319795562|ref|YP_004157202.1| type II and iii secretion system protein [Variovorax paradoxus EPS] gi|315598025|gb|ADU39091.1| type II and III secretion system protein [Variovorax paradoxus EPS] Length = 533 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 81/423 (19%), Positives = 162/423 (38%), Gaps = 33/423 (7%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P+ + EA I + + +++ + +++++++P V V + + + Sbjct: 67 PTTPPPQAVDEAELQRIAARATVMQRLPDSLTLYVGQMVLVKMPG-VARVAIGNGKVMEA 125 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRV 138 V M + ++ G + + + G + D+ + LR S + + Sbjct: 126 RVLDGANMLITAQDGGDSTLHVWDKSGGIRKVKVRVNVVDLDRIAGELREITRGISGVNI 185 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 V + +++ G +R +++ + A+ I + V + Sbjct: 186 RRVGERIIMDGNSLDPAAVERLNTVAQLYAPAVVSLATAD----------RIRVDRMVDI 235 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSS-------------------GPSKSFAADFGGKFV 239 +V I E ++ L +G + +G G + + + G + Sbjct: 236 QVRIVEFSKNALDDLGVRWQTSGDGFNFGLFSDIASSGSYRVLPDGSAFNTSTPQGTALL 295 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S+ + + + ++ + LA P L+ SG A + +GG+ Sbjct: 296 SQNRRTPQAYLGIGLTLGSQINLQVQRGNAFLLASPNLSTRSGGEAKYLAGGEIPLP-AL 354 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 S+ GA SV YGV L+ P G I I TEVS V +P +R+ DT Sbjct: 355 STQGAGSVEFKPYGVRLNIKPIADGEGNISGSILTEVSSIDPSVAVQGIPGLLIRRTDTE 414 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G TIVL+GLL + + +G+P L P++G FR + +E E+ + TP +V Sbjct: 415 FNVKTGETIVLSGLLSRESSRASDGLPGLRNTPVIGRAFRADKDIDKEQEVVVFITPRVV 474 Query: 420 KPV 422 Sbjct: 475 DAA 477 >gi|104779900|ref|YP_606398.1| type II/IV secretion system protein D [Pseudomonas entomophila L48] gi|95108887|emb|CAK13583.1| Putative type II/IV secretion system protein D [Pseudomonas entomophila L48] Length = 426 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 102/471 (21%), Positives = 173/471 (36%), Gaps = 97/471 (20%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 + + + L P A + + I + L++PV + Sbjct: 10 WLCLVVPLMLLMPQALATGKGCAAFDQMPTV----------IEMDQGLQQELRLPVAITR 59 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 V V +P ADV R + L G G +++L Sbjct: 60 VAVGEPKVADVQASGERAVLLTGVGQGNTSLMLW------------------TDCAPKPH 101 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 R + V + G + ++ A++ +E Sbjct: 102 RAM-------------VFIKGRA-SADMAEVALQATEQA--------------------- 126 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------------ 236 QV + EVRR K+ G + GS++ S Sbjct: 127 --PLPTQVQADIRFVEVRRLKYKEAGAKLFFKGSNNSLFGSPGTVPNTVVRPGYVPGIQT 184 Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + F++ F +++ALE + TLA P+LT +SG + Sbjct: 185 GTNPVTYADVRPGIPLDNDVFNIVWGGGSSRFLAMINALENSGFAYTLARPSLTVLSGLT 244 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---- 340 ASF +GG+ SS + S+ ++GV L TPTV+S RI L++ EVSE Sbjct: 245 ASFLAGGEIPIPVPSSGSDNVSIEYKEFGVRLALTPTVVSGNRINLKVAPEVSELDYNNA 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + +P VR+ DT++ L G + +++GL+ +++ + +P L +PI+GA FR Sbjct: 305 VVIAGTRVPGLSVRRTDTSITLADGESFIISGLITSNVRSGVDKMPGLGNLPIIGAFFRQ 364 Query: 401 SRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFNR 447 + NREETE+ + TP LV+P+A+ P + FF Sbjct: 365 TALNREETELLMIVTPHLVQPLAVNAKLPELPGEGLRTYDPSWGHLFFMEN 415 >gi|330887974|gb|EGH20635.1| type II and III secretion system protein [Pseudomonas syringae pv. mori str. 301020] Length = 416 Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 93/432 (21%), Positives = 156/432 (36%), Gaps = 77/432 (17%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + I ++ PV + + V DP ADV V+ G G ++++ Sbjct: 37 AAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLFTGVAQGTTSLMVW- 95 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 R+ + V + G + + Sbjct: 96 -----------------TACATAPRQSM-------------VFVRGRAT----ASMIESV 121 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + QV + EV R LK+ GS+ Sbjct: 122 TAPSADAEL--------------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSN 161 Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271 + + G +F++ +L+A+E + T Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYT 221 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L+ Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281 Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVSE I + ++P+ +R+ DT++ L G + V++GL+ P Sbjct: 282 VAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPG 341 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443 L IPILGA FRNS+ R+E E+ + TP LV+P+A S P + + + Sbjct: 342 LGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLY 401 Query: 444 FF--NRVNKIYG 453 F ++ G Sbjct: 402 FLENGDFDRRDG 413 >gi|254515204|ref|ZP_05127265.1| general secretion pathway protein D [gamma proteobacterium NOR5-3] gi|219677447|gb|EED33812.1| general secretion pathway protein D [gamma proteobacterium NOR5-3] Length = 682 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 86/486 (17%), Positives = 166/486 (34%), Gaps = 72/486 (14%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 L+ + L P A + +NA +I+ S I + + I +++ + + Sbjct: 137 RLENISAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDSAANISRIRDIIERMDQSAVQET 196 Query: 63 PVDVQDVLVSDPTKADVVVHSPRT---------MYLFGKNVGQANVILIGHDGKQMLNLD 113 V V++ + + + L ++++ G + ++ Sbjct: 197 DVIAMRYAVAEDVVRMLETLNATEAKNNGGEVDVLLVPDK-RTNSLLVSGDELQRARIRK 255 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 ++ D + + I + +++ VL +++ I + + Sbjct: 256 LVAYVDTPLEQTGNVKVIYLEYAQATAIAE--VLTRVMQNINKLDTGDGKAARSSGNTAT 313 Query: 174 NQYANS--------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217 + + + V+ L+I QV ++ I E+ + +G Q Sbjct: 314 IEADEGTNSLIITADPDEMAAVESVITRLDIR-RAQVLVEAIIVELEVTDGQDLGLQWLF 372 Query: 218 ----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----------------- 256 GSS S + A + G + GD F Sbjct: 373 ANDNGFYGSSINASDARARNIAGAILPPDGDGGSGATTGDFDVGNLAAALAGSAGLSLGW 432 Query: 257 ---------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----- 302 +L+ALE + L+ P+L + + A T G Q + T S + Sbjct: 433 GVVGEDLSMTVILNALEEQSNANILSTPSLLTLDNEEAFITVGQQVPFITGSFTNTGGNN 492 Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVR 354 ++ + G+ L TP V + L I+ EV+ A R Sbjct: 493 GAQNPFQTIERENVGITLTVTPQVNEGDSVVLEIEQEVNSLTGATLVASAAAADLITNER 552 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 K T V G +VL GL+KDD+Q ++ +P+L IP LG LFRN + +T + I Sbjct: 553 KIRTKVLAEDGRIVVLGGLIKDDVQSTEQRVPILGDIPFLGRLFRNDAVSVSKTNLMIFI 612 Query: 415 TPFLVK 420 P +++ Sbjct: 613 RPTIIR 618 >gi|88704137|ref|ZP_01101852.1| General secretion pathway protein D [Congregibacter litoralis KT71] gi|88701964|gb|EAQ99068.1| General secretion pathway protein D [Congregibacter litoralis KT71] Length = 696 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 89/486 (18%), Positives = 166/486 (34%), Gaps = 72/486 (14%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 L+ + L P A + +NA +I+ S I + + I +++ + + Sbjct: 151 RLENISAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDSASNISRIQDIIERMDQSAVQET 210 Query: 63 PVDVQDVLVSDPTKADVVVHSPRT---------MYLFGKNVGQANVILIGHDGKQMLNLD 113 V V++ + + + L +V++ G + ++ Sbjct: 211 DVIALRYAVAEDVVRMLEKLNASEAKNNGGEVDVLLVPDK-RTNSVLVTGDELQRARIRS 269 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 ++ D + + I + +++ VL +++ I + S + Sbjct: 270 LVAYVDTPLEQTGNVKVIYLEYAQATAIAE--VLTRVMQNINKLDTGDAKAARASSNTAT 327 Query: 174 NQYANS--------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217 + + + V+ L+I QV ++ I E+ + +G Q Sbjct: 328 IEADEGTNSLIITADADEMAALESVITRLDIR-RAQVLVEAIIVELEVTDGQDLGLQWLF 386 Query: 218 ----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----------------- 256 GSS S S A + G + D F Sbjct: 387 ANDSGFYGSSINASDSRARNIAGAILPPDSDGGTGSTTGDFDVGNLAAALAGSAGLSLGW 446 Query: 257 ---------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----- 302 +L+ALE + L+ P+L + Q A T G Q + T S + Sbjct: 447 GVVGEDLSMTVILNALEEQSNANILSTPSLLTLDNQEAFITVGQQVPFITGSFTNTGGNN 506 Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVR 354 ++ + G+ L TP V + L I+ EV+ A R Sbjct: 507 GAQNPFQTIERENVGITLTVTPQVNEGDSVVLEIEQEVNSLTGATLVASAAAADLITNER 566 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 K T V G +VL GL+KDD+Q ++ +P+L IP LG LFRN + +T + I Sbjct: 567 KIRTKVLAEDGRVVVLGGLIKDDVQSTEQRVPILGDIPYLGRLFRNDAVSVSKTNLMIFI 626 Query: 415 TPFLVK 420 P +++ Sbjct: 627 RPTIIR 632 >gi|119477881|ref|ZP_01618004.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2143] gi|119449042|gb|EAW30283.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2143] Length = 689 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 84/463 (18%), Positives = 171/463 (36%), Gaps = 58/463 (12%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L P + +NA +I+ + I + +++ ++ + + + + ++ Sbjct: 162 VLRPLVPQQGHMAAYGPSNAIIISDTMANINRIRQVIESIDLSAVEKTEIIPLEYASAEE 221 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + +V + ++ ++ D L + + L L +A S Sbjct: 222 IVRMLQQLQKTESAKGQADVKKLTLVADKRTNSILVAGDELERQRLESLITHLDTPLAQS 281 Query: 135 -NIRV------EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182 N++V + +VVL + + ++ E + + + ++ Sbjct: 282 GNVKVIYLKYADATELSVVLSKVAQNMERMSENNEKTRLAGKSEATIEADDGTNSLIVTA 341 Query: 183 ---------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 V+ L+I QV ++V I E+ + + +G + S G S + Sbjct: 342 EADTMQLLLAVVAKLDIR-RAQVQVEVIIVEMTDNDGRDLGVEWLFINDSGGYGASNNSG 400 Query: 234 FGGKFV-------------------------SEGGDFSVKGVLDRFSFETVLHALERATA 268 G + G + + D SF V++AL++ + Sbjct: 401 LGSTIAGAAFETNNNGSSVDARGGIAEAIGGAAGQVLGIGRLDDDLSFNVVVNALQQNSE 460 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHF 318 L+ P+L + + ASF G + T S + +V + G+ L Sbjct: 461 ANILSTPSLLTLDNEEASFVVGQSIPFVTGSYTATGSSSSNPDNPFQTVERENVGITLRV 520 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + + L I EVS + P RK +TT+ +G TIVL GL++D+ Sbjct: 521 TPQINEGDSLILAISQEVSNVIGTSTILNSNPITSERKIETTILADNGQTIVLGGLIEDN 580 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + + +P+L IP LG LFR++ + + + I P +V+ Sbjct: 581 ITESIQKVPILGDIPFLGRLFRSTSTSVGKKNLLIFLRPTIVR 623 >gi|330811024|ref|YP_004355486.1| type II secretion system protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379132|gb|AEA70482.1| putative type II secretion system protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 407 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 91/410 (22%), Positives = 150/410 (36%), Gaps = 70/410 (17%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 +G L++ V + V DP ADV L G G ++++ K Sbjct: 42 TFEVGQGLQSELRILAPVTKLAVGDPKIADVQPSGNDAFILTGLAPGATSLMVWTDCSKI 101 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + ++ L G + + Sbjct: 102 PRQSMVFVKGRATEA-----------------------LTGAASIPSEDPMLLA------ 132 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ-----IGFQHSITGSS 223 QV + EV R LK+ G + + S Sbjct: 133 --------------------------QVQTDIRFVEVSRTKLKEASTSIFGTRGNFLFGS 166 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + F++ + +++ALE + TLA P+L A+SGQ Sbjct: 167 PRTLPTVGGIVRPSLPVNNDMFNLSFATGKTLL--MINALEGSGFAYTLARPSLVALSGQ 224 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342 SASF +GG+ S+ + S+ ++G+ L TPTV+ RI L++ EVSE Sbjct: 225 SASFLAGGEVPIPVPSAGSDNVSIEYKEFGIRLTLTPTVIGKNRIALKVAPEVSELDFTN 284 Query: 343 ---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + +P+ VR+ DT++ L G + V++GL+ P L IPILGA FR Sbjct: 285 AVNIAGTLVPALTVRRTDTSIALADGESFVISGLISTRNSSQVNKFPGLGDIPILGAFFR 344 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFF 445 ++ NREE E+ + TP LV+P+A + P + + + +F Sbjct: 345 DNSINREERELLMIVTPHLVQPLAADAQLPTLPGEQLRNYDPNFYRMYFL 394 >gi|238796996|ref|ZP_04640500.1| Type II/III secretion system protein [Yersinia mollaretii ATCC 43969] gi|238719256|gb|EEQ11068.1| Type II/III secretion system protein [Yersinia mollaretii ATCC 43969] Length = 340 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 156/339 (46%), Gaps = 31/339 (9%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 ++ I + DS+I ++ + D+ +L G V + ++ L + Sbjct: 1 MVNDIINATNKRIIAEYPDSHIEIDKIGDSYILTGEVESEEEKDTIATLVGEAIGSKKEE 60 Query: 175 QY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 ++N + + +QV +K+TIAEV +D + +G S G + G + Sbjct: 61 SGKGQYFNTPYYSNIINKIKLPQSNQVNVKLTIAEVTKDFSENVGVDWSTAGDAVGSFQF 120 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + T++HA+ + R LAEP L+ +SG+SASF Sbjct: 121 I-------------------RFNAKGISTLVHAINDDSIARILAEPNLSVLSGESASFLV 161 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AG 346 GG+ + + + +V+ ++G+ L+ V RI + I EVS N Sbjct: 162 GGEIPIIST--TENSRTVSYKEFGIKLNIGAKVNEKKRIRIHINEEVSSIGKTFNIEGGD 219 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +PS R RKA+TT+EL G + +L GL+ ++ + IPL+ IPILGALFRN++ + Sbjct: 220 SIPSLRTRKAETTLELGDGESFILGGLISHTERESLKKIPLIGDIPILGALFRNAQTEQN 279 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 +TE+ + AT LVK V+ +++ PD + + FF Sbjct: 280 QTELVVIATVNLVKSVSKKEVELPD--FMHTSTLERFFN 316 >gi|257483347|ref|ZP_05637388.1| type II and III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012566|gb|EGH92622.1| type II and III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 416 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 92/432 (21%), Positives = 155/432 (35%), Gaps = 77/432 (17%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + I ++ PV + + V DP ADV V+ L G G ++++ Sbjct: 37 AAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW- 95 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 R+ + V + G Sbjct: 96 -----------------TACATAPRQSM-------------VFVRGRAT----------- 114 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + + +V + EV R LK+ GS+ Sbjct: 115 -ASMIESVTAPSADAELPSQV------------QTDIRFIEVSRTKLKEASTSIFGKGSN 161 Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271 + + G +F++ +L+A+E + Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYI 221 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L+ Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281 Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVSE I + ++P+ +R+ DT++ L G + V++GL+ P Sbjct: 282 VAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPG 341 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443 L IPILGA FRNS+ R+E E+ + TP LV+P+A S P + + + Sbjct: 342 LGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLY 401 Query: 444 FF--NRVNKIYG 453 F ++ G Sbjct: 402 FLENGDFDRRDG 413 >gi|311105392|ref|YP_003978245.1| type II and III secretion system family protein 1 [Achromobacter xylosoxidans A8] gi|310760081|gb|ADP15530.1| bacterial type II and III secretion system family protein 1 [Achromobacter xylosoxidans A8] Length = 456 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 87/475 (18%), Positives = 167/475 (35%), Gaps = 57/475 (12%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 ++R ++ + L +P+ ++I + + + IL P Sbjct: 1 MRRAVASIFAWALCLVSPAAWP--------------------ADEEIELQVGETRILSHP 40 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V+ V + + + R + +F + G +++ + + + ++ L Sbjct: 41 G-VKRVAIGNGQVIGAIEAEGREVIVFARAEGVSSLHVWANGARAKAYELRVVPAGAPRL 99 Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + +A R V +++ G + D R L++ + + Sbjct: 100 RAEVEALLARIPGARSTEVGGRILIEGDDLSDDDRLRITALADRYPAVLDFTG------- 152 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSE 241 + + V L V + E+ L+ +G + ++ A G+ Sbjct: 153 ------QVGWDRMVQLDVQVVEIPTSKLRDLGVRWDGMSQGGINAGLAWDAGSRGRVSRP 206 Query: 242 G---------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G + + L ++ LA+P L A SG SA+F +GG+ Sbjct: 207 GEEIIETMGRVSSPAGYFGVNALLSSRIAMLAQSGEAVMLAQPQLLARSGASATFLAGGE 266 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 Y + + +T++ YGV+L TP V G I I+ E S ++ P+ R Sbjct: 267 VPYSSTDTRGNSTTL-FKPYGVMLRITPRVDRNGIIRSLIEVEASSVDNALSVPGGPALR 325 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+A T + SG T+V+ G L + + +G+P L IP+LGALF + R+ ETE+ I Sbjct: 326 TRRASTEFNVRSGDTLVIGGFLSRERDEASDGLPWLKDIPVLGALFSSRRYQLRETELAI 385 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 TP L+ D + + G Sbjct: 386 FVTPKLIAQAEPAM----ADRVRRG-------RGVLEAAFPEAPRLGTAVPAASG 429 >gi|258624763|ref|ZP_05719694.1| Flp pilus assembly protein [Vibrio mimicus VM603] gi|258582925|gb|EEW07743.1| Flp pilus assembly protein [Vibrio mimicus VM603] Length = 347 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 149/366 (40%), Gaps = 42/366 (11%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ------------ 170 L+ TL D +I V V D VVL G V + + + L L + Sbjct: 2 LKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLKKNVSKVNNHVIET 61 Query: 171 ------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 A V+N L + +Q+ +K+TIAEV L ++G + G Sbjct: 62 GENNREEALQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLSELGVSYGDIGGGD 121 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G ++ ++ A + LAEP L+ ISG++ Sbjct: 122 ----------------VGKFYNKLLDFTAQDIVAIIAASGNDDIGQVLAEPNLSVISGET 165 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341 ASF GG+ T ++ +YG+ L V I L + EVS Sbjct: 166 ASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLSLLPEVSSLDSVNR 223 Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 ++ + PS + RKA TTV+L G + VLAGLL + ++ IP+L IPILGALF + Sbjct: 224 SDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPILGDIPILGALFSS 283 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 ++ +R++TE+ I AT LV PV + P + D + ++ + P+ + Sbjct: 284 TKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLLRIDLSGVDEPELQRTI 341 Query: 461 EGQNYK 466 + Sbjct: 342 NAGGFN 347 >gi|298488959|ref|ZP_07006982.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156457|gb|EFH97554.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 416 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 93/445 (20%), Positives = 158/445 (35%), Gaps = 77/445 (17%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 ++ A + I ++ PV + + V P ADV V+ L Sbjct: 24 QSAWAASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGAPKIADVHVNGTDGFLLT 83 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G G ++++ R+ + V + G Sbjct: 84 GVAQGTTSLMVW------------------TACATAPRQSM-------------VFVRGR 112 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + + +V + EV R L Sbjct: 113 AT------------ASMIESVTAPSADAELPSQV------------QTDIRFIEVSRTKL 148 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFET 258 K+ GS++ + G +F++ Sbjct: 149 KEASTSIFGKGSNNFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLA 208 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + ++P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDD 432 P L IPILGA FRNS+ R+E E+ + TP LV+P+A S P + Sbjct: 329 SSSNVGSVSKFPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGE 388 Query: 433 HYS--VEDDAKAFFF--NRVNKIYG 453 + +F ++ G Sbjct: 389 GLRTYDPSFPRLYFLENGDFDRRDG 413 >gi|186473164|ref|YP_001860506.1| type II and III secretion system protein [Burkholderia phymatum STM815] gi|184195496|gb|ACC73460.1| type II and III secretion system protein [Burkholderia phymatum STM815] Length = 451 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 89/424 (20%), Positives = 167/424 (39%), Gaps = 21/424 (4%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 S LF + + ++ + + + +V +L VP + Sbjct: 9 ALRCFASAALFMGVLAAGASAADATSAQRGVDADAAQNAA--VLDLYKGEVRMLNVPGTI 66 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 + + + + V R + L ++ G ++++ G + + + D+ Sbjct: 67 KRIAIGNGKLLTANVVDGR-VMLLAESAGITSLVVWNERGVALQTTVRVAKGDVGMSAAQ 125 Query: 127 LRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 LR +A +RV+ V +VL G V + + +++ + KK + Sbjct: 126 LRSVLAAVPGVRVQEVGPNIVLAGSVHREKAAAVKAAIADMTNVIDTTTIDEGDALKKTL 185 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 + KV I EV R K IG + S F G + G +F Sbjct: 186 HF-----------KVQIMEVTRTGQKDIGIAWDSQFAGPQVSGQ---GFIGSGAASGANF 231 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + G+ + + ++ LA P L SG +ASF +GG+ + G T Sbjct: 232 FLAGIAS--TITSRINFAINNGDAFILAAPELNTKSGGTASFLAGGEVPIPKA-GALGTT 288 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 V YG+ L+ P V + I +QTE+S+ V+ G P + R A + + L +G Sbjct: 289 DVEYKPYGIRLNIRPVVDANDIISATVQTEISQIDPSVSYGGFPGFLTRSASSDISLRAG 348 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 TI ++GL+ D G+P +++PI+G LFR+ F + +++ I TP + +P Sbjct: 349 ETIAISGLVSADALNGSAGMPFFARLPIIGQLFRSDSFRAKNSDLVIFVTPLISEPSGEP 408 Query: 426 DLSR 429 + + Sbjct: 409 NTAL 412 >gi|330989176|gb|EGH87279.1| type II and III secretion system protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 416 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 93/432 (21%), Positives = 156/432 (36%), Gaps = 77/432 (17%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + I ++ PV + + V DP ADV V+ L G G ++++ Sbjct: 37 AAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW- 95 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 R+ + V + G Sbjct: 96 -----------------TACATAPRQSM-------------VFVRGRAT----------- 114 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + + +V + EV R LK+ GS+ Sbjct: 115 -ASMIESVTAPSADAELPSQV------------QTDIRFIEVSRTKLKEASTSIFGKGSN 161 Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271 + + G +F++ +L+A+E + T Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYT 221 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L+ Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281 Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVSE I + ++P+ +R+ DT++ L G + V++GL+ P Sbjct: 282 VAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPG 341 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443 L IPILGA FRNS+ R+E E+ + TP LV+P+A S P + + + Sbjct: 342 LGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLY 401 Query: 444 FF--NRVNKIYG 453 F ++ G Sbjct: 402 FLENGDFDRRDG 413 >gi|291279644|ref|YP_003496479.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans SSM1] gi|290754346|dbj|BAI80723.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans SSM1] Length = 406 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 110/262 (41%), Gaps = 16/262 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------- 224 + K ++ +++ + QV ++ I EV + +++G Q S + + Sbjct: 147 TDTKENIEKMKYYISKIDVPIK-QVMIEAKIVEVSKTGSRELGLQWSANTNINSTNKYFP 205 Query: 225 ------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 G + + + + F + L ALE+ + +++P + Sbjct: 206 NTISIGGDTSGYMVNLPITNPGGTLSLLLGNYSGSFILDAKLQALEQQGLAKIVSQPKIV 265 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 ++ + A SG + YK + T V + + + L TP V I L+I + SE Sbjct: 266 TMNNKEAKIESGFEFHYKVIDD--DDTDVESDEAKLSLTVTPQVTPDNNILLKIVVDKSE 323 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P RKA+T V+L G T V+ GL+++ +P LSKIP++G LF Sbjct: 324 LDFSKTVDGYPLKFTRKAETYVKLKDGETTVIGGLVQEKQSNSTSAVPGLSKIPLIGWLF 383 Query: 399 RNSRFNREETEIFIAATPFLVK 420 ++ + + ++ I TP ++K Sbjct: 384 KSKTNSHDLNDLVIFITPKIIK 405 >gi|327541686|gb|EGF28210.1| bacterial type II/III secretion system protein [Rhodopirellula baltica WH47] Length = 454 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 94/338 (27%), Positives = 154/338 (45%), Gaps = 29/338 (8%) Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 + + +++RV + ++ ++ G V ++ D +AV ++E F + V+N Sbjct: 1 MNSQLPLASLRVTPIGESAIISGYVTSVDDVDKAVAITEQFYTT-------------VIN 47 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFG-----GK 237 + + G QV L I EV R L+++G +I + GPS G Sbjct: 48 NIQVVGIQQVLLHTKIMEVSRTKLRELGVDLAILDDNFTLLNGPSGVLDVGAGIVEGDAG 107 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F + +FET+++AL + LAEPT+ A G+ A FT GG+ Sbjct: 108 FGPIPLGDTNLRFNVNGNFETLINALHEQRLTKLLAEPTVVATHGRPARFTVGGRIP-TI 166 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRV 353 V G +T DYG + F P V+ PGRI L ++ EVSEP VN ++ ++ Sbjct: 167 VPGQNGQVQITYEDYGTSIDFLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTT 226 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R +T VE+ +G T LAGLL+ + P +P +G LFR + R E E+ I Sbjct: 227 RYVETAVEMQAGQTFALAGLLQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLIL 286 Query: 414 ATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN 449 TP LV+ + ++ R P + DD + + + + Sbjct: 287 VTPELVEAMDPHEVPRGGPGMNSHSPDDKEFYLYGHIE 324 >gi|299532819|ref|ZP_07046206.1| type II and III secretion system protein [Comamonas testosteroni S44] gi|298719043|gb|EFI60013.1| type II and III secretion system protein [Comamonas testosteroni S44] Length = 454 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 110/432 (25%), Positives = 174/432 (40%), Gaps = 35/432 (8%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 RTF L S + SV +P + + + ++I + + L +P Sbjct: 10 SRTFSLKSLYLLCSLSLSVVTVPALAQQVPNAGESRAQQATAAREIKLVMGAQHELNLPG 69 Query: 65 DVQDVLVSDPTKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V+ + + D T A V + + L G + ++ Q + +++ Sbjct: 70 GVERIAIGDDTIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQR 129 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYA 177 + LR A S I + G + Q + +A V+LS L + Sbjct: 130 VE-----LRTAKASSLIEQQFA-------GELANAQLADKAKTVDLSSVQLKSNVVQVDV 177 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + + + GF I G S + ++ G Sbjct: 178 KVVEFNKTQMKKVG-----------LNLFSTAPNSSGFSFGIFGRGSYGTGGGSSTTGAA 226 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F++ D+ + LE R LA PTL A+SGQSA+F SGG+ Sbjct: 227 ANPLTQAFNLLMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP- 285 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRV 353 V + TG ++ YG+ L +PTVLS RI L++ E SE N+ +PS Sbjct: 286 VPAGTGMVAIQYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITT 345 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+ADTTVEL G + V+ GL+ + + +PLL IPILG LF+ F ++E+E+ I Sbjct: 346 RRADTTVELGDGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIV 405 Query: 414 ATPFLVKPVAMR 425 TP LVKP+A Sbjct: 406 VTPRLVKPLARD 417 >gi|85859832|ref|YP_462034.1| general secretion pathway protein D [Syntrophus aciditrophicus SB] gi|85722923|gb|ABC77866.1| general secretion pathway protein D [Syntrophus aciditrophicus SB] Length = 717 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 16/264 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++ L++ QV ++ TI E+ + G + I S G S + G Sbjct: 452 NLLQALDVPAR-QVLIEATIVELTLTDELKYGVEWFIRNSWDGDSYTLGTLGKLGLEPLG 510 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--- 299 ++ FE ++ AL + L+ P L + A+ G T Sbjct: 511 LTYAFLSRTG--QFEALISALAEKSKANILSTPRLMVLDNMEATIQVGKDVPTVTGQIST 568 Query: 300 --------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 S++ + S+ GV+L PT+ + G + L I EVS+ GD P Sbjct: 569 LDSVNTTDSTSVSQSIQYRSTGVMLKVKPTINTEGLMTLEITQEVSDIAETPGVGDSPII 628 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ +T++ G TIVL GL++++ + +PLL IPILG LF+ + +++TE+ Sbjct: 629 LTRRINTSIIAAHGQTIVLGGLMQENQSLGESKVPLLGDIPILGNLFKATSKTKDKTELL 688 Query: 412 IAATPFLVKPVAMRDLSRPDDHYS 435 + TP ++ D + D Sbjct: 689 VLVTPTIL--TDPNDAVKITDQLR 710 >gi|87120710|ref|ZP_01076603.1| general secretion pathway protein D [Marinomonas sp. MED121] gi|86163938|gb|EAQ65210.1| general secretion pathway protein D [Marinomonas sp. MED121] Length = 616 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 83/459 (18%), Positives = 167/459 (36%), Gaps = 35/459 (7%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 ++ + L P L + NA +I+ I + + L+ I ++ Sbjct: 131 IKNAVAAELVPILRPLIPQYGHLAAVPTMNALIISDHADNIRSLEDLVERLDSTIEGEMA 190 Query: 64 VDVQDVLVSDPTKADVVVH---------SPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114 V + + + + +IL G G+ D+ Sbjct: 191 VIPLKHAWAGDVITLLQELTTTTTGKGARSSDVTTIVADERTNRLILKGKPGELNQIKDL 250 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 +I+ DI + + ++I V+D +L G+V I+ + ET + Sbjct: 251 IIKLDIPAEKTSRLQYIPLQYADATKVAD--LLKGVVGDIEKKEGNAPTLETNIQADEDL 308 Query: 175 QYANSSSKK--------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------- 217 +S+ V+ +++ QV ++ I E+ +++G Q Sbjct: 309 NALLVNSEPGVMSEIYSVLKQIDVP-RAQVLIEAVIVEITVTDEEELGVQWLIGGSDEII 367 Query: 218 -SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 +S+G S + A + +L +F ++ AL+ T L+ P Sbjct: 368 SGTNFTSAGSSANTIASSINSSTANTLATGGTAILGDTNFGAIIQALQSKTNSNLLSTPK 427 Query: 277 LTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + Q A G ++T S + + + D G+ L TP + S + + + Sbjct: 428 ILTLDNQEARILVGETRPFQTGEYSEDSDSTFVTTSREDVGLTLKVTPHINSGNEVKMEV 487 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 V + VR+ +T V TIVL GL++D+I + K+ +P L +P Sbjct: 488 FQTVESASDEASDLGT-ITTVREVETVVIAGDRQTIVLGGLIQDNITESKQKVPFLGDLP 546 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 +G LFR+S F+ ++ + + P +++ A D Sbjct: 547 FVGGLFRSSSFSIDKKNLLVFIRPTIIRGKAKADQITNT 585 >gi|119505085|ref|ZP_01627161.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080] gi|119459067|gb|EAW40166.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080] Length = 696 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 163/476 (34%), Gaps = 59/476 (12%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 L+ + L P A + +NA +I+ I + +I +++ I Sbjct: 155 RLENISAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDIASNIRRIVEIIDRMDRSAIQGT 214 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 V V++ + ++ ++ + ++ ++ D L + I Sbjct: 215 QVIKLRYAVAEDVVQMLQTLEKQSRGDGAESNDEVTLVADKRTNSVVVTADELNSQRILD 274 Query: 123 LEMTLRRFIADS-NIRV------EMVSDTVVLHGMVRTIQDSQR-------------AVE 162 L L + S N++V + V VL +++ + Sbjct: 275 LVTYLDTPLEQSGNVKVVYLEYADAVEVAEVLTRVMQNMSRLDTGGDRKPSTNTNSTIEA 334 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 T + +S + V+ L+I QV ++ I E+ +++G Q Sbjct: 335 DEGTNALIITADADEMASLEAVIARLDIR-RAQVLVEAIIVEMEITEGQELGLQWIFADD 393 Query: 223 SSGPSKSFAADF-----------------------------GGKFVSEGGDFSVKGVLDR 253 S + + G G V D Sbjct: 394 SGAFGSNVSTSSAQQQRNAAIGNALLGDENSNADIGVRDLAGALSQVPGTTLGWGVVGDD 453 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------GA 304 S +L+ALE L+ P+L + Q A T G + T S S Sbjct: 454 LSMSVILNALETQGNANILSTPSLLTLDNQEAYITVGQNVPFVTGSYSNTGGASNVQNPF 513 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 ++ + G+ L TP V + L I EVS + A RK +T V Sbjct: 514 QTIERENVGITLKVTPQVNEGDSVVLDIVQEVSSISQQLLAAADVITNERKIETKVMAQD 573 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G +VL GL+KDD+Q ++G+P L IP+LG LFRN + ++ + + P +V+ Sbjct: 574 GDVVVLGGLVKDDVQDSQQGVPFLQDIPLLGRLFRNDVVSVTKSNLLVFIRPTIVR 629 >gi|170720034|ref|YP_001747722.1| type II and III secretion system protein [Pseudomonas putida W619] gi|169758037|gb|ACA71353.1| type II and III secretion system protein [Pseudomonas putida W619] Length = 419 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 101/470 (21%), Positives = 175/470 (37%), Gaps = 87/470 (18%) Query: 2 RYLQRTFFTMMSIFLF--SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII 59 R + FF++ + L + P+ EA A + ++ +++ G +++ + L Sbjct: 6 RCSSKRFFSLACLALLTVALLPNAHGASKGCEAFAQLPSVIEIDQGLQQELRLPL----- 60 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + V DP ADV R + V +G ++ Sbjct: 61 -----AITRAAVGDPKVADVQPSGDRAVL----------VTAVGQGNTTLMLWTACAPGP 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + + G + Sbjct: 106 HRAM---------------------LFVKGQASAAMA---------------ETGLPPSL 129 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + QV + EVRR K+ G + +GS++ S G Sbjct: 130 DPE---------LPSQVQADIRFVEVRRTKYKEAGARLFFSGSNNSLIGSPGTVPGTSVT 180 Query: 240 S------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 G F++ F ++ALE + TLA P+LT +SG +ASF Sbjct: 181 PGAVPVTSPQIPLNNGVFNIVWGGGSSRFLAAINALENSGFAYTLARPSLTVLSGLTASF 240 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGV 343 +GG+ S+ + S+ ++GV L TPTV+S RI L++ EVSE + + Sbjct: 241 LAGGEIPIPVPSAGSDNFSIEYKEFGVRLALTPTVISRDRITLKVAPEVSELDYTNAVTI 300 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +P +R+ DT++ L G + +++GL+ ++ + + +P L +PILGA FR S Sbjct: 301 GGTSVPGLSIRRTDTSISLADGESFIISGLVGNNTRSAVDKLPGLGNLPILGAFFRQSAL 360 Query: 404 NREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFNRVN 449 REETE+ + TP LV+P+A P + + FF N Sbjct: 361 VREETELLMIVTPHLVQPLAANARLPELPGEGLRTYDPSWGRLFFMENGN 410 >gi|163801327|ref|ZP_02195226.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4] gi|159174816|gb|EDP59616.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4] Length = 416 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 74/366 (20%), Positives = 137/366 (37%), Gaps = 40/366 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ +N+ L + +D++V DV + +YL G+ VI+ G + Sbjct: 37 INMSVNETKHLPLSYVPKDIVVGSDKVVDVNLADSNNLYLIAHEAGKTKVIVKGEEETTE 96 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + + H +++ V++ + ++G V+ + + +L +S Sbjct: 97 YVIQVRDTDKDTHNLNKFLESAGYTDVEAVKVAEKIYINGAVKDKVEKRELNKLVRNAIS 156 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 + ++ I QV + +T+AEV + I ++G Sbjct: 157 RY------------YVDNTTITENRQVRINLTMAEVSKSIDDELGITW------------ 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G +S + S + L R L P++ +G +A+F + Sbjct: 193 ------------GAGWSKIDGVTSKSLSATIGLLSRNNLATVLTRPSIIVTNGSTATFEA 240 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347 GG+ T V DYG+ L F P + I LR S+ + D Sbjct: 241 GGEVPVLTYDDEN--VDVEFKDYGIKLEFKPNIKRDQSIDLRANVSSSQIADFIKLGGND 298 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P R +T + + G VLAGL+ + Q +P L +PI+G+LF + F + Sbjct: 299 TPQLNTRSVNTELNVNDGDIFVLAGLIDNSQTQAVSKVPFLGYLPIIGSLFTSENFKSNK 358 Query: 408 TEIFIA 413 TE+ I Sbjct: 359 TELMIF 364 >gi|192361327|ref|YP_001983786.1| general secretion pathway protein D [Cellvibrio japonicus Ueda107] gi|190687492|gb|ACE85170.1| General secretion pathway protein D [Cellvibrio japonicus Ueda107] Length = 681 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 97/523 (18%), Positives = 183/523 (34%), Gaps = 88/523 (16%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 L+ T + L P L + +NA +I + + + ++ + L+K+ I Q Sbjct: 145 LKNTSAAKILAALRPLVPQYGHLTTYEPSNALIITDTRANVARMNELVVQLDKIGITQTD 204 Query: 64 VDVQDVLVSDPTK---ADVVVHSPRTMYLFGKNVGQAN---VILIGHD-GKQMLNLDILI 116 V + + P G VI+ +++ D + Sbjct: 205 VIPLRYANATEVVNMLTQLEKPDPNR--------GMTTSPPVIVADKRINAVVISGDDMS 256 Query: 117 ERDIAHLEMTL-RRFIADSNIRV------EMVSDTVVLHGMVRTIQDSQRAVELS----- 164 + + L L R ++N+RV + VL GM+++ S++A + Sbjct: 257 RQRLKFLIDDLDRPQTKNANVRVVYLRYAKAEDVAKVLTGMMQSFTQSRQAEGAAPNTQQ 316 Query: 165 -------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 T + + +++ L+I QV ++ IAEV + K++G + Sbjct: 317 PGVQADPATNSVLLTADVDTMDTMLSIVDSLDIR-RAQVLVEAIIAEVSDEDGKELGIEW 375 Query: 218 SITGSSSGPS-------------------------------KSFAADFGGKFVSEGGDFS 246 G + A G G F Sbjct: 376 MYRDDKYGFGASANGSRGSIGGIGSAVLAASDKNASQDDKDTALANLASGLSGLSGQMFG 435 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----- 301 + +R F VL ++ ++ L+ P+L A + G Q ++T S S Sbjct: 436 FGRLGERTDFLAVLKLMQSSSKTNILSTPSLLTTDNNQAVISVGRQVPFRTGSYSAVGTG 495 Query: 302 ------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + T++ D G+ L TP + I L I+ EVS + + R+ Sbjct: 496 GNSTIGSPFTTINREDVGLKLEVTPHINEGDSIVLDIKQEVSSLSDVSSEDGI-ITNKRE 554 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T + G TIVL GL+ D++Q + +P+L IP+LG LFR+ ++ +T + + Sbjct: 555 IQTQILSSDGETIVLGGLITDEVQTGERRVPVLGSIPVLGQLFRSQTSSKSKTNLLVFIR 614 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 +V+ DD A+ + R ++ + Sbjct: 615 ATVVR----------DDKVLTGSTAEKYRLIREEQLNHVRNRG 647 >gi|194446460|ref|YP_002042738.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405123|gb|ACF65345.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 426 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 84/426 (19%), Positives = 164/426 (38%), Gaps = 21/426 (4%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +RT ++I L + P+ K A ++ + + ++ + ++ Sbjct: 10 VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65 Query: 63 PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 P + + A V + + L + G + + Q + + Sbjct: 66 PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 118 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L + + + +I ++ + + + + T N+ A Sbjct: 119 DAERLRLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRMLLRDNRAAL 178 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K ++ +++ QV L I + L+++G + ++ ++ + Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 237 Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V G ++ + L ALE+ + +A P L A Q AS G + Y Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 297 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353 + S +GATSV + + + TPTVL GRI L+ I V V+ G++ + Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 357 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417 Query: 414 ATPFLV 419 TP LV Sbjct: 418 ITPRLV 423 >gi|205357592|ref|ZP_03223780.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205330642|gb|EDZ17406.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 426 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 85/426 (19%), Positives = 163/426 (38%), Gaps = 21/426 (4%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +RT ++I L + P+ K A ++ + + ++ + ++ Sbjct: 10 VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65 Query: 63 PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 P + + A V + + L + G + + Q + + Sbjct: 66 PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 118 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L + + +I ++ + + + + T N+ A Sbjct: 119 DAERLRFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 178 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K ++ +++ QV L I + L+++G + ++ ++ S Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDL 237 Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V G ++ + L ALE+ + +A P L A Q AS G + Y Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPY 297 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353 + S +GATSV + + + TPTVL GRI L+ I V V+ G++ + Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 357 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417 Query: 414 ATPFLV 419 TP LV Sbjct: 418 ITPRLV 423 >gi|194451757|ref|YP_002047512.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359079|ref|ZP_03224213.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194410061|gb|ACF70280.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338987|gb|EDZ25751.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 426 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 84/426 (19%), Positives = 164/426 (38%), Gaps = 21/426 (4%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +RT ++I L + P+ K A ++ + + ++ + ++ Sbjct: 10 VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65 Query: 63 PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 P + + A V + + L + G + + Q + + Sbjct: 66 PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 118 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L + + + +I ++ + + + + T N+ A Sbjct: 119 DAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 178 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K ++ +++ QV L I + L+++G + ++ ++ + Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 237 Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V G ++ + L ALE+ + +A P L A Q AS G + Y Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 297 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353 + S +GATSV + + + TPTVL GRI L+ I V V+ G++ + Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 357 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417 Query: 414 ATPFLV 419 TP LV Sbjct: 418 ITPRLV 423 >gi|205359546|ref|ZP_03224342.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344340|gb|EDZ31104.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 429 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 84/426 (19%), Positives = 164/426 (38%), Gaps = 21/426 (4%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +RT ++I L + P+ K A ++ + + ++ + ++ Sbjct: 13 VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 68 Query: 63 PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 P + + A V + + L + G + + Q + + Sbjct: 69 PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 121 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L + + + +I ++ + + + + T N+ A Sbjct: 122 DAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 181 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K ++ +++ QV L I + L+++G + ++ ++ + Sbjct: 182 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 240 Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V G ++ + L ALE+ + +A P L A Q AS G + Y Sbjct: 241 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 300 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353 + S +GATSV + + + TPTVL GRI L+ I V V+ G++ + Sbjct: 301 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 360 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + Sbjct: 361 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 420 Query: 414 ATPFLV 419 TP LV Sbjct: 421 ITPRLV 426 >gi|254784514|ref|YP_003071942.1| general secretion pathway protein D [Teredinibacter turnerae T7901] gi|237684660|gb|ACR11924.1| general secretion pathway protein D [Teredinibacter turnerae T7901] Length = 661 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 82/466 (17%), Positives = 166/466 (35%), Gaps = 52/466 (11%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 L+ + L P + L +NA V++ + I + K++ ++ + Sbjct: 133 LKNIAAAKVLPVLRPLVPQHSHLAAYDPSNAIVVSDTAANIERIKEVIEKIDTAAMPVTE 192 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V S+ A + G + Q ++ + +L+ + L + + L Sbjct: 193 VIELKYADSESLVATLAKLDGANK--QGNSANQITMVADKRNNAILLSGEDLQRQRVKQL 250 Query: 124 EMTL-RRFIADSNIRV------EMVSDTVVLHGMVRTIQDSQ------RAVELSETFLSQ 170 L R + N+RV VL +V+ + A + + + Sbjct: 251 IRRLDRPQLQTGNVRVVYLEYATAKDVATVLSKVVQNMAKMTPGGDKGAARQGATVEADE 310 Query: 171 SGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + + + V++ L+I QV ++ I E+ + +G ++ Sbjct: 311 ATNSLLITAEGDQLDAIMAVVDRLDIR-RAQVLVEAIIVEMTLGDKESLGIDWMFKNATQ 369 Query: 225 GPSK----------------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 G + A S+G V G F +++ Sbjct: 370 GLIGASTAGGTGAAGVAAALFGGAEDAAAQLLTALGGSDGQTLGVAGESGGEDFLVLVNM 429 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGV 314 L+ + L+ PTL + A + G + T S + ++ D G+ Sbjct: 430 LQSNSNANILSTPTLLTMDNNEAMISVGQNVPFVTGSFTNAGGNGGTNPFQTIQRQDVGI 489 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L TP V ++ L IQ E+S + RK +T V IVL GL+ Sbjct: 490 TLTVTPHVNEGDKVILDIQQEISSVSEEAGSASDVITNQRKVETQVMAKDRSVIVLGGLI 549 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +D++Q+ + +P+L IP++G LFR++ ++ + I P +++ Sbjct: 550 RDELQKSENRVPVLGSIPVMGRLFRSNSETLRKSNLMIFIRPTIIR 595 >gi|329895109|ref|ZP_08270837.1| General secretion pathway protein D [gamma proteobacterium IMCC3088] gi|328922510|gb|EGG29849.1| General secretion pathway protein D [gamma proteobacterium IMCC3088] Length = 672 Score = 200 bits (508), Expect = 5e-49, Method: Composition-based stats. Identities = 81/480 (16%), Positives = 160/480 (33%), Gaps = 67/480 (13%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 L+ + L P A + +NA VI+ I + + +++ I + Sbjct: 142 RLENISAAKLIPVLRPLVPQQAHMAAYTPSNAIVISDLASNISRINDLISQMDQSAIQET 201 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG--QANVILIG-HDGKQMLNLDILIERD 119 + + V++ + + G + +++ ++ D L Sbjct: 202 DILPLEYAVAEDVVKMLEQLNKSE----AAQAGGEETVLLVADTRTNSVLVTGDELQRAR 257 Query: 120 IAHLEMTLRRFIADS-NIRV------EMVSDTVVLHGMVRTIQDSQ------------RA 160 + L L + + N++V + VL +++ I Sbjct: 258 MRALVEHLDTPLQRAGNVKVVYLKYAKAADVAQVLTKVMQNIGRLDSSKSKTSGGHDATI 317 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217 T + ++ + V+ L+I QV ++ I E+ + +G Q Sbjct: 318 EADEGTNSLIITADTDEMAALESVIYQLDIR-RAQVLVEAIIVEMEVIDGQSLGLQWLFA 376 Query: 218 ---------------------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + ++ S G + Sbjct: 377 NDSGVYGSSVSSDVSTAGAISSAVLGGNADAANPVGDFDLGQLAAALAGSPGLTLGWGAI 436 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302 + S +L+AL++ + L+ PTL + Q A T G + T + + Sbjct: 437 DNDLSMTVILNALKKQSNANILSTPTLLTLDNQEAYITVGQNVPFVTGAYTNTGSGGSGV 496 Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 ++ + G+ L TP + + L I+ EVS + RK T V Sbjct: 497 QNPFQTIERENVGITLTVTPHINDGDSVVLDIEQEVSSLTGLSSIASDLITNERKIQTKV 556 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+VL GL+KD++Q + +P+L IP+LG LFRN +T + I P +++ Sbjct: 557 LAGDGKTVVLGGLIKDNVQDGSQRVPVLGSIPLLGRLFRNDAVEVTKTNLLIFIRPTIIR 616 >gi|194470789|ref|ZP_03076773.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358599|ref|ZP_02657680.2| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194457153|gb|EDX45992.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333155|gb|EDZ19919.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 426 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 84/426 (19%), Positives = 163/426 (38%), Gaps = 21/426 (4%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +RT ++I L + P+ K A ++ + + ++ + ++ Sbjct: 10 VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65 Query: 63 PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 P + + A V + + L + G + Q + + Sbjct: 66 PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-FHV----HSQAWQKEHSARQ 118 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L + + + +I ++ + + + + T N+ A Sbjct: 119 DAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 178 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K ++ +++ QV L I + L+++G + ++ ++ + Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 237 Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V G ++ + L ALE+ + +A P L A Q AS G + Y Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 297 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353 + S +GATSV + + + TPTVL GRI L+ I V V+ G++ + Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 357 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417 Query: 414 ATPFLV 419 TP LV Sbjct: 418 ITPRLV 423 >gi|148556416|ref|YP_001263998.1| type II and III secretion system protein [Sphingomonas wittichii RW1] gi|148501606|gb|ABQ69860.1| type II and III secretion system protein [Sphingomonas wittichii RW1] Length = 431 Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats. Identities = 102/438 (23%), Positives = 158/438 (36%), Gaps = 59/438 (13%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++S L ++ + + +S+ L +L P + Sbjct: 1 MTRLLSTALVAAVALIGPAAATAAED---------------SLSLQLRVKRVLDYPKPIA 45 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 + V V S R++ + G A + + DG + I + Sbjct: 46 RIQVDREGVIAVRAPSRRSLGVTAIGTGLATLSVFAADGSLIGRTAISVG---------- 95 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + V D L G V + +S+ + N Sbjct: 96 --LPGGATGDVRADEDDGSLSGTVDGLAARAALQR---------------SSADRGAANS 138 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---- 243 L++ GE V + V A V L+ +GF S + A G + G Sbjct: 139 LSVNGEQVVAVDVQFAAVSSSTLRALGFNFSKLSGDLQGAIVSPATLGNFSSTSTGLTLD 198 Query: 244 -------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HL 294 F++ VL AL + LA+PTL SG+ ASF +GG+ Sbjct: 199 TTAPLQNAFNLFLSAPNRGITAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEVPIP 258 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPS 350 + + + ++GV L TP VLS RI L+I EVSE +P Sbjct: 259 VPQNNGNGNGIGIEYKEFGVRLKVTPFVLSKDRIVLKIAPEVSELDYTNGVRLQGYVVPG 318 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R R +TTV+L SG + V+AGL + KE P L +P+LGALF+ + RE E+ Sbjct: 319 LRRRSTETTVQLGSGQSFVIAGLTYSNSVVSKEKTPFLGDLPVLGALFKRQQNQRESQEL 378 Query: 411 FIAATPFLVKPVAMRDLS 428 I ATP LV P+ + Sbjct: 379 IIVATPRLVGPMDPSRIP 396 >gi|197265045|ref|ZP_03165119.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243300|gb|EDY25920.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 426 Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 83/426 (19%), Positives = 163/426 (38%), Gaps = 21/426 (4%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +RT ++I L + P+ K A ++ + + ++ + ++ Sbjct: 10 VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65 Query: 63 PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 P + + A V + + L + G + + Q + + Sbjct: 66 PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 118 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L + + + +I ++ + + + + T N+ A Sbjct: 119 DAERLRLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 178 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K ++ +++ QV L I + L+++G + ++ ++ + Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 237 Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V G ++ + L ALE+ + +A P L A Q AS G + Y Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 297 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353 + S +GATSV + + + TPTVL G I L+ I V V+ G++ + Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGLIRLKLHISQNVPGQVLQQADGEVLAIDK 357 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417 Query: 414 ATPFLV 419 TP LV Sbjct: 418 ITPRLV 423 >gi|119943949|ref|YP_941629.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37] gi|119862553|gb|ABM02030.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37] Length = 689 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 64/296 (21%), Positives = 120/296 (40%), Gaps = 6/296 (2%) Query: 129 RFIADSNIRVEMV---SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 + I+V + +L ++ + AV + + ++ A + K M Sbjct: 389 APLYSEFIQVNYAKVADISAMLSSDKTSLLSERGAVSVDNRTNTLLVKDTAAVIDAVKKM 448 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 + QV ++ + V + +++G + +T +SS S + + F Sbjct: 449 IQILDIPVRQVVIEARMVTVDDSVSEELGVKWGMTSTSSSTVDSLNVNLPATDAAGTIAF 508 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + + + L ALE +A P +T + Q+A G + Y +SS GAT Sbjct: 509 KLAKFSNGDILDLELSALESENKAEIIASPRITTANQQTAYIEQGTEIPYVESASS-GAT 567 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELP 363 SV + L TP + ++ L ++ + G+ + +K T V + Sbjct: 568 SVAFKKAVLSLTVTPQITPDNKVILDLEITQDTVGETVSAGTGEAVAIDTQKIGTQVLVG 627 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G T+VL G+ + +PLL IP LGALFR++ ++E+ I TP +V Sbjct: 628 NGETLVLGGIYQQRNSIAVSKVPLLGDIPYLGALFRSTNEENTKSELLIFVTPRIV 683 >gi|255020086|ref|ZP_05292157.1| type II and III secretion system protein [Acidithiobacillus caldus ATCC 51756] gi|254970448|gb|EET27939.1| type II and III secretion system protein [Acidithiobacillus caldus ATCC 51756] Length = 502 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 77/439 (17%), Positives = 150/439 (34%), Gaps = 59/439 (13%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 A+ + + + I + +V ++ V+ V + D V + L G Sbjct: 13 AIAMAIPAQAAEDRTIDLYAGQVRVIPTK-PVKRVAIGDGKVLSTTVVDGNELLLLGDAE 71 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN----IRVEMVSDTVVLHGM 150 G+ ++ + DG + ++ +++ +R + IRV V + Sbjct: 72 GETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNL 131 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 T RA++ + + +K V L V I E+R+ +L Sbjct: 132 APTTLARVRALQ--ALYPKTIVLATPSPFDMEK-----------MVWLDVNILEIRKSVL 178 Query: 211 KQIGFQHSITGSSSGPSKS--------------------------------FAADFGGKF 238 + G S + G Sbjct: 179 ENFGVDWSKQIPGPFAAFGKDFVGPRNVATVPLGQDLTQPPVAGTGVRVTPPLGSLNGAI 238 Query: 239 VSEGGDFSVKGVLDRFSFET---VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G + ++ +A P L+A SG F +GGQ Sbjct: 239 DLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPI 298 Query: 296 KTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMP 349 ++ +VT DYG+ L F P V + +R+ +VS+ N +P Sbjct: 299 LQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVP 358 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R+++ + + G T+V++GL+ + +P L IPILG LF+++ F T+ Sbjct: 359 GFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTD 418 Query: 410 IFIAATPFLVKPVAMRDLS 428 + I TP +V ++ ++ Sbjct: 419 LVILVTPRVVSAASLENIR 437 >gi|331005872|ref|ZP_08329224.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989] gi|330420316|gb|EGG94630.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989] Length = 659 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 83/448 (18%), Positives = 165/448 (36%), Gaps = 46/448 (10%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L P A L + +NA +++ + I + I +++ + + V + + Sbjct: 161 VLRPLAPQHAHLAAYEPSNAIIVSDTVANIARLTDIIERIDRAGVAETDVMPLEYAQA-A 219 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 A ++ + KN QA ++ ++ D + + L L S Sbjct: 220 ELATILQQLSKNDQDSPKNT-QAVIVADQRSNSILVTGDQVRRNKVRELVARLDVSQPQS 278 Query: 135 -NIRV------EMVSDTVVLHGMVRTIQD------------SQRAVELSETFLSQSGRNQ 175 N+RV + VL +V +I ++ A ++ + Sbjct: 279 GNVRVIYLEYADAEEVATVLAKVVSSISKLEPDSAKGAKPSAENASVEADPATNSLLITA 338 Query: 176 YANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 A++ V+ L+I QV ++ I E+ D+ +++G + + ++G S + Sbjct: 339 DADTMESLLSVIKRLDIR-RAQVLVEAIIVEITNDLSRELGVEWAAYKQNNGFIGSRNSA 397 Query: 234 FGGKFVSE--------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G + G G + F +++ + + L+ P+L Sbjct: 398 TLGTLATAIESGDGIAGAPNFTGQGLGFFGNSNGVDFAGLINFFQGSAEANVLSTPSLLT 457 Query: 280 ISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A + G + T S+ ++ D G+ L TP + + L I Sbjct: 458 TDNNEAEISIGQNVPFVTGSFTTSSGDSTDPFQTIEREDVGISLKVTPQINEGDTVNLEI 517 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 Q EVS A D+ RK T V G TI+L GL+ ++++Q ++ +P L IP Sbjct: 518 QQEVSSISNSSQASDV-ITNERKISTKVIAQDGETIILGGLISNEVRQDEQKVPFLGDIP 576 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420 +LG LFRN + + + +++ Sbjct: 577 LLGGLFRNDSTTSSKQNLMVFLRATILR 604 >gi|207858728|ref|YP_002245379.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206710531|emb|CAR34889.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 412 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 83/421 (19%), Positives = 161/421 (38%), Gaps = 21/421 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I L + P+ K A ++ + + ++ + ++ P Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56 Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + + A V + + L + G + + Q + +D L Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + + +I ++ + + + + T N+ A + +K Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRMLLRDNRAALAELEK 169 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ +++ QV L I + L+++G + ++ ++ S Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAA 228 Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V G ++ + L ALE+ + +A P L A Q AS G + Y+ S Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358 +GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408 Query: 419 V 419 V Sbjct: 409 V 409 >gi|330722019|gb|EGG99947.1| General secretion pathway protein D [gamma proteobacterium IMCC2047] Length = 338 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 62/290 (21%), Positives = 113/290 (38%), Gaps = 12/290 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKF 238 K V+ L+I QV ++ I EV +L +G Q + S+G +F A + Sbjct: 14 KGVVQKLDIR-RKQVLVEAVIVEVNDSVLDDLGVQWQTSTPSNGEFSAFNAIPANISTPA 72 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + G G S ++ ALE T L+ PT+ + + A G + T Sbjct: 73 LPTLGSGLTLGYFKDNSLRALIRALESDTKANVLSTPTIVTLDNEEAEILVGSNVPFITG 132 Query: 299 SSST-------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 S + ++ D G+ L P + + L I+ V Sbjct: 133 SETNESSPTSNPFQTIQRQDIGITLKVKPRINENDSMTLAIEQTVESIATSAVNTADIVT 192 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V L +VL GL+ D+ ++ +P+L IP+LG LFR++ E+ + Sbjct: 193 NKRNIKTNVLLEDDQVLVLGGLISDESSNVESKVPVLGHIPVLGRLFRSTSTKVEKKNLM 252 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + P ++ + + D Y+ + + + ++I+ PK+ + Sbjct: 253 VFIHPMILSDLERSN-KLTSDRYNSMRNKQQQYNGDRDRIFIPKQPPLLP 301 >gi|16766776|ref|NP_462391.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422046|gb|AAL22350.1| putative transport protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261248643|emb|CBG26481.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995705|gb|ACY90590.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160031|emb|CBW19550.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914512|dbj|BAJ38486.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323131847|gb|ADX19277.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990340|gb|AEF09323.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 412 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 83/421 (19%), Positives = 160/421 (38%), Gaps = 21/421 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I L + P+ K A ++ + + ++ + ++ P Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56 Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + + A V + + L + G + + Q + +D L Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + +I ++ + + + + T N+ A + +K Sbjct: 110 RFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ +++ QV L I + L+++G + ++ ++ S Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAA 228 Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V G ++ + L ALE+ + +A P L A Q AS G + Y+ S Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358 +GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408 Query: 419 V 419 V Sbjct: 409 V 409 >gi|320087902|emb|CBY97664.1| Protein transport protein hofQ Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 412 Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 82/421 (19%), Positives = 161/421 (38%), Gaps = 21/421 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I L + P+ K A ++ + + ++ + ++ P Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56 Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + + A V + + L + G + + Q + +D L Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + + +I ++ + + + + T N+ A + +K Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ +++ QV L I + L+++G + ++ ++ + Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228 Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V G ++ + L ALE+ + +A P L A Q AS G + Y+ S Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358 +GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408 Query: 419 V 419 V Sbjct: 409 V 409 >gi|260768627|ref|ZP_05877561.1| type II and III secretion system protein [Vibrio furnissii CIP 102972] gi|260616657|gb|EEX41842.1| type II and III secretion system protein [Vibrio furnissii CIP 102972] Length = 387 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 92/411 (22%), Positives = 162/411 (39%), Gaps = 67/411 (16%) Query: 44 IGKGKKISIGLNKVIILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + + I++ N L V + V V+DP A + V + T+ + N G ++++ Sbjct: 20 VHAAEPITLSENAQTSLSVGEQQITRVAVADPNVATIDVLNKNTLLINSHNGGSTSLLVW 79 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 + + + + N++V+ ++ ++ S+ A++ Sbjct: 80 LKNSPSPKAYQLHVVPSLVSTT----------NVQVQT---------DIKVVEVSKSALK 120 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + F + N + +N Sbjct: 121 EAGFFFGKQSGNTTFGIGNNAALN------------------------------------ 144 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + + G F+ F+V + + AL TLAEP+L +SG Sbjct: 145 --GGNFAGELLSGNSFLPLSNAFNVVIGDMSRGILSTISALNANGFAYTLAEPSLVTMSG 202 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 +A+F +GG+ Y SS G ++ ++GV L+ +PTV+ RI L++ EVSE Sbjct: 203 HTATFLAGGEFPYPKA-SSDGDITIEFKEFGVRLNLSPTVMKDNRIMLKVAPEVSELNYN 261 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + +P VR+ DTTV+L G T V++GL+ + P L IPILGA F Sbjct: 262 NAVSTGGVLVPGMSVRRTDTTVQLGDGETFVISGLISSSTMNNSDRFPGLGDIPILGAFF 321 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFF 445 ++RF + + E+ + TP LVKP+A P + Y D + F Sbjct: 322 SSTRFEKNDKELMMVVTPHLVKPIAKGATLPPLPGEIYRNYRPDFFELVFL 372 >gi|62181990|ref|YP_218407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129623|gb|AAX67326.1| putative transport protein, possibly in biosynthesis of type IV pilin [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716478|gb|EFZ08049.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 412 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 83/421 (19%), Positives = 163/421 (38%), Gaps = 21/421 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I L + P+ K A ++ + + ++ + ++ P Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQALA-EQERQNLVVSPDVSG 56 Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + + A V + + L + G + + Q + ++D L Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSAQQDAERL 109 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + + +I ++ + + + + T N+ A + +K Sbjct: 110 RLQANLPLENRSINLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ +++ QV L I + L+++G + ++ ++ + A Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVATLSSDLSVAAA 228 Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V G ++ + L ALE+ + +A P L A Q AS G + Y+ S Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358 +GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408 Query: 419 V 419 V Sbjct: 409 V 409 >gi|238913611|ref|ZP_04657448.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 412 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 82/421 (19%), Positives = 161/421 (38%), Gaps = 21/421 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I L + P+ K A ++ + + ++ + ++ P Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVSVVQVLQALA-EQERQNLVVSPDVSG 56 Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + + A V + + L + G + + Q + +D L Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + + +I ++ + + + + T N+ A + +K Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ +++ QV L I + L+++G + ++ ++ + Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228 Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V G ++ + L ALE+ + +A P L A Q AS G + Y+ S Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358 +GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408 Query: 419 V 419 V Sbjct: 409 V 409 >gi|85705572|ref|ZP_01036670.1| type II and III secretion system protein [Roseovarius sp. 217] gi|85669997|gb|EAQ24860.1| type II and III secretion system protein [Roseovarius sp. 217] Length = 441 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 87/448 (19%), Positives = 172/448 (38%), Gaps = 38/448 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 + ++ +++++ K I+L V +V V VSD T AD + S +++FGK VG Sbjct: 22 LPSVLSSPASAQERLTVEQGKSILLPVGDNVDTVFVSDTTVADASISSNNRVFVFGKEVG 81 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 + ++I + +++ ++ + ++ I VE ++++ G+V + + Sbjct: 82 ETSLIATSTYADSDMTFTVVVTHKLSEIRSVIQSRFPGEQIAVESSRGSLMITGIVSSDR 141 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 + V E+ ++ +++ L +A + + L+V + EV R ++ G Sbjct: 142 VRETLVTTLESAAPETT-----------IIDRLRVASSNIIRLEVKLLEVSRTQVENFGI 190 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + T +++G + + G K S L L E Sbjct: 191 DWNATVTANGFFLGTS--------NRGVLSVGKSDTAESSLNAALDVLISNGIATIAQET 242 Query: 276 TLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 L+ ++G+ A F+ GG+ SS G + G L FTP++ ++ L Sbjct: 243 VLSTVNGEEALFSVGGEIPIPTFIPVDSGSSDGNFQLDFKFIGTSLSFTPSIAPGNKLRL 302 Query: 331 RIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I + +S + VN P+ R T VEL V+AG+ ++D Sbjct: 303 LIDSTISSQGQTSSTVNGNVFPNLNTRSFRTNVELSDRQPFVIAGVTRNDTSNDLRQDRG 362 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFF 445 I+ +L R E+ + TP L+ + + + P + + Sbjct: 363 TGLSRIVDSLLGQDRVTANSQELVVIVTP-LLTELEPQSIQERLP----APLSNLGFILS 417 Query: 446 NRVNKIYGPKEASEVEGQNYKGAIGFIY 473 NR ++ + N GA GF Y Sbjct: 418 NRDSR----TAITHEPRYNAFGAAGFRY 441 >gi|322831067|ref|YP_004211094.1| general secretion pathway protein D [Rahnella sp. Y9602] gi|321166268|gb|ADW71967.1| general secretion pathway protein D [Rahnella sp. Y9602] Length = 659 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 24/272 (8%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 Q S ++V+ L+I QV ++ I EV+ +G Q S Sbjct: 321 TAQQDVMQSLEQVITKLDIR-RAQVLVEAIIVEVQDGNGLNLGIQWSNNQVGGTQFTGTG 379 Query: 232 ADFG------------GKFVSEGGDFSVKGVLDR-------FSFETVLHALERATAIRTL 272 A G S+ S + + +L AL + L Sbjct: 380 APISTVAAGVRQYKKEGIISSDNPLSSTLQTFNGMTAGFFSGDWNVLLTALSTSNKNDIL 439 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G + + S +T +SV G L TP + + Sbjct: 440 ATPSIVTLDNKEASFNVGQEVPSLSGSQTTSGDNIYSSVVYKTVGTKLKVTPQINEGDSV 499 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + I+ EVS N+ P++ R V + +G T+VL GLL D ++ K +PLL Sbjct: 500 LMEIEQEVSSVDTSTNSSLGPTFNTRTISNAVLVRTGETVVLGGLLDDSTKETKSKVPLL 559 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP +G LFR + + + + P +++ Sbjct: 560 GDIPWIGNLFRYTSTESAKRNLMVFIRPTIIR 591 >gi|56415404|ref|YP_152479.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364334|ref|YP_002143971.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129661|gb|AAV79167.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095811|emb|CAR61383.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 412 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 83/421 (19%), Positives = 162/421 (38%), Gaps = 21/421 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I L + P+ K A ++ + + ++ + ++ P Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQALA-EQERQNLVVSPDVSG 56 Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + + A V + + L + G + + Q + +D L Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + + +I ++ V + + + + T N+ A + +K Sbjct: 110 RLQANLPLENRSISLQYVDTGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ +++ QV L I + L+++G + ++ ++ + Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228 Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V G ++ + L ALE+ + +A P L A Q AS G + Y+ S Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358 +GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408 Query: 419 V 419 V Sbjct: 409 V 409 >gi|116328309|ref|YP_798029.1| Type II secretory pathway component, protein D [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331035|ref|YP_800753.1| Type II secretory pathway component, protein D [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121053|gb|ABJ79096.1| Type II secretory pathway component, protein D [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124724|gb|ABJ75995.1| Type II secretory pathway component, protein D [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 598 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 81/438 (18%), Positives = 160/438 (36%), Gaps = 39/438 (8%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKIS--IGLNKVIILQVPVDVQDVLVSDPTKADV 79 ++A+ P ++ + + E+G + I+ I + ++ ++ + + + Sbjct: 132 ALARSPVVRVGKELIP---ETEVGDYRTITQIIPIENTKPEELEPILKRLTSPNTDV--I 186 Query: 80 VVHSPRTMYLFGKNVGQANVILI----------GHDGKQMLNLDILIERDIAHLEMTLRR 129 V + T+ L G ++++ G D+ I + Sbjct: 187 VYRNTNTIVLSGSGADINKLLVLINELDLKLEEASPGAIASAGDVHIYTLEHSEAEKIAA 246 Query: 130 FI---ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 + + ++ E +S + G + + +AV E+ + +K++ Sbjct: 247 TLVKLDNPVVQSEELSPEKKVPGQIPMKVEKIKAVGHKESNSVIVTATNAEWAEIRKIIK 306 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 +L+ + QV L+V I E+ L G G + G S + S G Sbjct: 307 VLD-SARKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSNGQINP 365 Query: 247 VKGVLDRFSFETV----------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 L FS + L A + L+ P + + Q A + G + Sbjct: 366 NVNTLSGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQDVPVR 425 Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 T S + G + G+ L FTP V RI L + E+ AG Sbjct: 426 TQSRNAGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNRITLELFQEIKNIAEIALAGGN 485 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P++ R+ T++ + + +IV+ GL+ +D Q+ IP L IP LG LF+ + ++T Sbjct: 486 PTFNRREIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTEKIKKT 545 Query: 409 EIFIAATPFLVKPVAMRD 426 + + TP ++ D Sbjct: 546 NLMVFITPHILDSRENAD 563 >gi|85711968|ref|ZP_01043022.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145] gi|85694154|gb|EAQ32098.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145] Length = 393 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 85/386 (22%), Positives = 152/386 (39%), Gaps = 36/386 (9%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 + + +++ + + +L + V+++D A + S T+ + G G Sbjct: 11 AAWVQTSNAVTTENLTLTVGQSELLTI-TPSTQVMIADEALAQAKLISQDTLLVRGLLPG 69 Query: 96 QANVILIGHDGK--QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 ++ LIG + K + + + + + L+ R + N V + L G + Sbjct: 70 TTDMWLIGPNDKRVVITIVHAVPKTIVTRLKTWARDY---PNFNVHEEGQHIELSGSLP- 125 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + +L E + + R + LKVTI E+++ ++Q+ Sbjct: 126 ALERTALKKLIEPYPNIIDRTVSTRVDHPML------------RLKVTILEIKQQFVQQL 173 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G Q GV + + LE+ A + LA Sbjct: 174 GIQWDSQIDGPNWQWGRQ----------------GGVQWSPLLMSNIQLLEQQGAAKLLA 217 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 P LT SGQ ASF +GG+ V G V+ +YGV L PTV + +I ++ Sbjct: 218 TPVLTTQSGQPASFLAGGEIPIPQVV-GQGMQDVSFREYGVRLTIEPTVSAESKITAKLS 276 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 EVS V +P R+ + + G T+VL+GLL D + + G+P L ++PI Sbjct: 277 AEVSNIDPAVEVNGVPGILTRRTEAVLSSRHGETVVLSGLLSTDSSESEAGLPGLKQLPI 336 Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419 G +F++ + TE+ I T +V Sbjct: 337 AGEVFKHRGQRNQHTELLIFVTSEIV 362 >gi|322629821|gb|EFY26594.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322659197|gb|EFY55449.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|323227365|gb|EGA11531.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323245960|gb|EGA29947.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250737|gb|EGA34615.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323261394|gb|EGA44980.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] Length = 412 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 82/421 (19%), Positives = 160/421 (38%), Gaps = 21/421 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I L P+ K A ++ + + ++ + ++ P Sbjct: 1 MKRWIAIILIVLMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56 Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + + A V + + L + G + + Q + +D L Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + + +I ++ + + + + T N+ A + +K Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ +++ QV L I + L+++G + ++ ++ + Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228 Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V G ++ + L ALE+ + +A P L A Q AS G + Y+ S Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358 +GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408 Query: 419 V 419 V Sbjct: 409 V 409 >gi|209518484|ref|ZP_03267306.1| type II and III secretion system protein [Burkholderia sp. H160] gi|209501117|gb|EEA01151.1| type II and III secretion system protein [Burkholderia sp. H160] Length = 684 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 78/483 (16%), Positives = 167/483 (34%), Gaps = 72/483 (14%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK-- 76 + S+ + P + A + + + + +++ ++ + + + V++ T Sbjct: 190 AASSIMRTPVTLQFRDANVRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNATLQD 246 Query: 77 ----------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 D + T++++ + + + L + ++ Sbjct: 247 TVNMILMQNQLDKKQLNANTLFIYPATPAK-----QLEYQELKVRTFQLSNVEAKQIQSL 301 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L+ + + V+ ++TV + G TI+ +++ ++ L Sbjct: 302 LKSLLKIKEVVVDERANTVTIRGTPDTIRVAEQM--IAAQDLPDPE-------------- 345 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 V L+V + EV D L +G + + S PS + S Sbjct: 346 ---------VILEVKVLEVSHDRLTDLGIAWPNSFTVSTPSTVDTWGELHHLPINALNVS 396 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 F T LA P++ A + + A G + + SS+ Sbjct: 397 GLSATANFKL--------TDTDANLLASPSIRARNKEKARILIGDKVPVISSSSTPSTSG 448 Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYR 352 ++ D G+ L P V +G+++ EVS +++ + Sbjct: 449 PSYAQTIQYLDVGIKLEVEPQVYRDADVGMKLNLEVSNITNTISSSNSTTGLTSLAYEIG 508 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A T++ + G + +L GL++D+ + + +P L ++P+LG LF N + ++TEI + Sbjct: 509 TRSASTSLRVHDGESQILGGLIQDEDRLTADKVPGLGQLPVLGRLFSNHNGDHKKTEIVL 568 Query: 413 AATPFLVKP-----VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 TP +V+P ++L D D + P A G G Sbjct: 569 EITPHIVRPQTSADADTQELWSGTDVNVHADQLRLDPVGAEATEQMPVPAVRTPGNVGGG 628 Query: 468 AIG 470 G Sbjct: 629 TTG 631 >gi|17547022|ref|NP_520424.1| GSPD-like protein [Ralstonia solanacearum GMI1000] gi|17429323|emb|CAD16010.1| probable type II secretory pathway, gspd-related protein [Ralstonia solanacearum GMI1000] Length = 789 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 80/434 (18%), Positives = 155/434 (35%), Gaps = 67/434 (15%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 + S+ + P + A + + + + +S+ ++ + + + + VS+ + D Sbjct: 185 AAASIMRKPVSLQFRDANVRMVFEALSRTTGLSVIFDRDVRVDLK---TTIFVSNASLED 241 Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 V V + T++++ + + L D H++ Sbjct: 242 TVDMILLQNQLAKKVLNANTVFIYPATPAK-----QQEYQDLKVRTFQLSNTDAKHIDTL 296 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L+ + I + ++TV + TI+ ++R ++ L + Sbjct: 297 LKNLLKIKEIVTDERANTVSIRATPETIRVAERM--IAAQDLPEPE-------------- 340 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 V L+V + EV RD L +G + S PS + S Sbjct: 341 ---------VMLEVEVLEVSRDRLTDLGIDWPNSFSLGTPSSASTWGALHHLTVNQLTAS 391 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 V T LA P + + + A G + + SS Sbjct: 392 GLSVTANLKL--------TDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSG 443 Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYR 352 S+ D G+ L P V +G+++ EVS +++ + Sbjct: 444 PVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNAQTGLSSLAYQIG 503 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A TT+ L G T +L GL++D+ + +P L ++P+LG LF N + ++TEI + Sbjct: 504 TRNASTTLRLKDGETQILGGLIQDEDRDAANKVPGLGQLPVLGRLFSNHNGDHKKTEIVL 563 Query: 413 AATPFLVKPVAMRD 426 TP +V+P D Sbjct: 564 QITPHIVRPQLAAD 577 >gi|327399337|ref|YP_004340206.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411] gi|327181966|gb|AEA34147.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411] Length = 704 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 110/257 (42%), Gaps = 32/257 (12%) Query: 196 VTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGK---------------- 237 V + I E+ + +Q+G Q + SK+F G Sbjct: 447 VEIDARIVEISKSFERQLGIQWGGNFFNQNINNSKTFIGVGGSSSPVDVSSGLPPSESFS 506 Query: 238 --------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + ++ VL ++ + L E + L+ P + + + Sbjct: 507 NDNFVVNLPAGLSDAPTSTVRLAIGNVLANYNLDLKLTMGEIEGYSKVLSTPKVITLDNE 566 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 A +SG + Y+ + ++GATSV+ + + L TP + ++ L+++ + P Sbjct: 567 PAKISSGQEIPYQESAGASGATSVSFKEATLSLEVTPHITRNDQVILKLKIKKDSPDYSH 626 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + G P + D+TV L +G TIV+ GL++ Q+ G+P L +IP+LG LF+ R Sbjct: 627 SVGGEPPINTNEVDSTVILSNGQTIVIGGLMQSTTQKTVSGVPGLMRIPLLGWLFKTKRI 686 Query: 404 NREETEIFIAATPFLVK 420 +TE++I TP +VK Sbjct: 687 YNPKTELYIFVTPHIVK 703 >gi|308271298|emb|CBX27906.1| hypothetical protein N47_G32300 [uncultured Desulfobacterium sp.] Length = 695 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 102/241 (42%), Gaps = 12/241 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV ++ TIAE+ Q G + I + G + + + G F+ + + Sbjct: 443 KQVLIEATIAELTLSDDLQYGLEWYINNTLQGGAYTLGTSGNLGLSASGLAFNF--ISES 500 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTGA 304 + ++ A A L+ P L I + A+ G T S+ Sbjct: 501 KKVKGLISAFAIAGKTNILSTPRLMVIDNKEATIQVGEDVPTVTSQVTSTESTITSTNLL 560 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 SV + GV+L PT+ + G + L + EVSE P +RK +TTV + Sbjct: 561 QSVQYRNTGVILRVKPTINTEGLLTLELSQEVSE-TGEKGVAGSPVILMRKINTTVVIAQ 619 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T++L GL+K+ + +P L IPI+G LF+ + + +TE+ I TP ++ V Sbjct: 620 GQTLLLGGLMKEKNTTGESKVPGLGDIPIIGNLFKATSKTKNKTELIILVTPTIISNVDD 679 Query: 425 R 425 Sbjct: 680 A 680 >gi|16762799|ref|NP_458416.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144286|ref|NP_807628.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053391|ref|ZP_03346269.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416770|ref|ZP_03349914.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426742|ref|ZP_03359492.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646579|ref|ZP_03376632.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852697|ref|ZP_03382229.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25324276|pir||AB1000 type II secretion system protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505105|emb|CAD08126.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139923|gb|AAO71488.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 412 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 82/421 (19%), Positives = 160/421 (38%), Gaps = 21/421 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I L P+ K A ++ + + ++ + ++ P Sbjct: 1 MKRWIAIILIVLMPAA---QAGKAAKVTLVVDDVPVVQVLQALA-EQERQNLVVSPDVSG 56 Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + + A V + + L + G + + Q + +D L Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + + +I ++ + + + + T N+ A + +K Sbjct: 110 RLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ +++ QV L I + L+++G + ++ ++ + Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228 Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V G ++ + L ALE+ + +A P L A Q AS G + Y+ S Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358 +GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408 Query: 419 V 419 V Sbjct: 409 V 409 >gi|325294586|ref|YP_004281100.1| general secretion pathway protein D [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065034|gb|ADY73041.1| general secretion pathway protein D [Desulfurobacterium thermolithotrophum DSM 11699] Length = 630 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 84/448 (18%), Positives = 167/448 (37%), Gaps = 47/448 (10%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 V ++ ++ +NA V+ + + + + + L++ + +++ + + D Sbjct: 145 LLSPVGRVSIVRNSNAIVVTDKEKNVHRIETVVRRLDRA---PMKMEIASFEIKNGKVED 201 Query: 79 V-----VVHSPRTMYLFGKN---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V V+ + K G+ D + + ++ I ++ L + Sbjct: 202 VEKVLKVLLDKTFAFDIAKTVPLPGRDYYH-FASDKRTNTLFVVGTQKVIREVQSLLPKL 260 Query: 131 IADSNIRVEMVSDTVV-----------------LHGMVRTIQDSQRAVELSETFLSQSGR 173 D + VE + ++ G R V++ S S Sbjct: 261 --DKPLNVEDGNIHIIRLNYAFAEDMAKVLSSLFKGTSRKSMGLTGEVKIVADKSSNSLI 318 Query: 174 NQYANS---SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGP 226 + S K+V++ ++I QV ++V I E+ D L Q+G + G Sbjct: 319 VLSSPSDFKVVKEVIDSVDIKRP-QVFVEVQIVEMSMDKLLQLGVEWKFLSRGNLVPFGG 377 Query: 227 SKSFAADFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S + S + D +L+A + + +A P + + + Sbjct: 378 SLYGNLPLQAGYPSASPGLLLGIAKWRGDTPDIGLLLNAYAKEGGVNVIATPQILTLDNE 437 Query: 284 SASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 A Y T +++ S D G+ L TP + + G + L+I +V + Sbjct: 438 EAEINISKVIPYSTGVKYDANNNPVISYDYKDVGITLKITPHITASGEVRLKIYEKVEDV 497 Query: 340 VIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 V NA P R+A TTV++ G T+V+ GL+K E +P+L IP+LG LF Sbjct: 498 VGYANADQTAPITSKREAKTTVDVQDGQTLVIGGLIKSKKLTTIEKVPVLGNIPVLGNLF 557 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRD 426 + + E+T + + TP +V+ + Sbjct: 558 KKTGHQIEKTNLLVFITPRVVRSREEEN 585 >gi|213585294|ref|ZP_03367120.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 412 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 81/421 (19%), Positives = 159/421 (37%), Gaps = 21/421 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I L P+ K A ++ + + ++ + ++ P Sbjct: 1 MKRWIAIILIVLMPAA---QAGKAAKVTLVVDDVPVVQVLQALA-EQERQNLVVSPDVSG 56 Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + + A V + + L + G + + Q + +D L Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + + +I ++ + + + + T N+ A + +K Sbjct: 110 RLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ +++ QV L I + L+++G + ++ ++ + Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228 Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V G ++ + L ALE+ + +A P L A Q AS G + Y+ S Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358 +G TSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T Sbjct: 289 ESGTTSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408 Query: 419 V 419 V Sbjct: 409 V 409 >gi|205354888|ref|YP_002228689.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274669|emb|CAR39723.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326630034|gb|EGE36377.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 412 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 83/421 (19%), Positives = 161/421 (38%), Gaps = 21/421 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I L + P+ K A ++ + + ++ + ++ P Sbjct: 1 MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56 Query: 68 DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + + A V + + L + G + + Q + +D L Sbjct: 57 TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + + +I ++ + + + + T N+ A + +K Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRMLLRDNRAALAELEK 169 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ +++ QV L I + L+++G + ++ ++ S Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAA 228 Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V G ++ + L ALE+ + +A P L A Q AS G + Y+ S Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358 +GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP L Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGGIPWLGQLFRHDGKEDERRELVVFITPRL 408 Query: 419 V 419 V Sbjct: 409 V 409 >gi|113461255|ref|YP_719324.1| competence protein E [Haemophilus somnus 129PT] gi|112823298|gb|ABI25387.1| competence protein E [Haemophilus somnus 129PT] Length = 377 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 100/254 (39%), Gaps = 17/254 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I ++ ++ +F Sbjct: 122 EQIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGSLAANGFQHLTEQLNVNFATAA 181 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + QSAS G + Y Sbjct: 182 TPAGSIALQIAKINDRLLDLELTALERENNVEIIASPRLLTTNKQSASIKQGTEIPYVIT 241 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKA 356 + V + + L TP + I L + + P + G M S ++ Sbjct: 242 GKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNSPGSRITYGQNEMVSIDKQEI 301 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + + +PLL IPIL LF ++ E+ I TP Sbjct: 302 NTQVFARDGETIVLGGVFHDTITKGVDKVPLLGDIPILKRLFSRESERHQKRELVIFVTP 361 Query: 417 FLVKPVAMRDLSRP 430 +++ ++ +P Sbjct: 362 RIIRSEQPNEIIKP 375 >gi|207723669|ref|YP_002254067.1| type II secretory pathway, gspd-related protein [Ralstonia solanacearum MolK2] gi|206588873|emb|CAQ35835.1| type II secretory pathway, gspd-related protein [Ralstonia solanacearum MolK2] Length = 778 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 77/434 (17%), Positives = 152/434 (35%), Gaps = 67/434 (15%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 ++ S+ + P + A + + + + +++ ++ + + + VS+ T D Sbjct: 185 ASASIMRKPVSLQFRDANVRMVFEALSRTTGLNVIFDRDVRTDLK---TTIFVSNATLED 241 Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 V V + T++++ + + L D H+E Sbjct: 242 TVDMILMQSQLAKKVMNANTVFIYPATAAK-----QQEYQDLKVRTFQLSNTDAKHIEAL 296 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L+ + I + ++TV + +I+ ++R ++ L + Sbjct: 297 LKSLLKIKEIVTDERANTVSIRATPESIRVAERM--IAAQDLPEPE-------------- 340 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 V L+V + EV RD L +G P+ Sbjct: 341 ---------VMLEVEVLEVSRDRLTDLGIDW--------PNSFTLGTPSSAATWGDLHHL 383 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 L + T LA P + + + A G + + SS Sbjct: 384 TINRLTASGLSATANFKLTDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSG 443 Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYR 352 S+ D G+ L P V +G+++ EVS +++ + Sbjct: 444 PVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNAQTGLSSLAYQIG 503 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A T++ L G T VL GL++D+ + +P L ++P+LG LF N + ++TEI + Sbjct: 504 TRNASTSLRLKDGETQVLGGLIQDEDRDAANKVPGLGQLPVLGRLFSNHNGDHKKTEIVL 563 Query: 413 AATPFLVKPVAMRD 426 TP +V+P D Sbjct: 564 QITPHIVRPQPAAD 577 >gi|68249035|ref|YP_248147.1| competence protein E [Haemophilus influenzae 86-028NP] gi|148825285|ref|YP_001290038.1| competence protein E [Haemophilus influenzae PittEE] gi|59939227|gb|AAX12385.1| ComE [Haemophilus influenzae] gi|68057234|gb|AAX87487.1| competence protein E [Haemophilus influenzae 86-028NP] gi|148715445|gb|ABQ97655.1| competence protein E [Haemophilus influenzae PittEE] Length = 445 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|291280100|ref|YP_003496935.1| hypothetical protein DEFDS_1724 [Deferribacter desulfuricans SSM1] gi|290754802|dbj|BAI81179.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 796 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 71/290 (24%), Positives = 118/290 (40%), Gaps = 28/290 (9%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 V + + S +F+ + A +K ++ L+ QVT++ I EV Sbjct: 514 SVLSPRGKMEINAKSNSFV--ITDIKSAIEQAKDLLEELDKRTP-QVTIEARIVEVFDTN 570 Query: 210 LKQIGFQHSITGSSSGPSKSFAA--------------------DFGGKFVSEGGDFSVKG 249 +G Q + + S +F + + S+ Sbjct: 571 NVNLGIQWGGNYNVNSTSVNFPNTITVNGNTGSTGIGGAGYVVNLPVGAPAGALALSLGN 630 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + F+ + L ALE +RT++ P +T + Q A SGG + + T Sbjct: 631 LSRTFNLDIALSALESQNKVRTISSPRITTLDNQEAEIKSGGTAIIVP---TGDNTETEE 687 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D G+ L P + S I L I+ E S G + + +KA T V L +G T V Sbjct: 688 VDVGIKLKIKPHITSNNMIYLDIEVEKSSL--GAVTANTATTEEKKAKTQVLLANGETTV 745 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G+ +D+ ++ +G+P LSKIPILGALFR + E+ + TP +V Sbjct: 746 IGGIYEDEKSEVNQGVPFLSKIPILGALFRAKNNTVTKRELLVFITPKIV 795 >gi|325529100|gb|EGD06093.1| putative secretion type II protein [Burkholderia sp. TJI49] Length = 608 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 71/437 (16%), Positives = 155/437 (35%), Gaps = 74/437 (16%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK-- 76 ++ S+ + P + A + + + + +++ ++ + + + V + + Sbjct: 158 ASSSIMRTPVSLQFRDANVRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVQNASLQD 214 Query: 77 ----------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI----ERDIAH 122 D + T++++ + L + D Sbjct: 215 TVDMILLQNQLDKKQMNANTLFIYPATP---------AKELEYQELKVRTFQLSNVDAKQ 265 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 ++ L+ + ++ ++TV + G I+ ++ ++ L + Sbjct: 266 VQSLLKSLLKVKEAVIDEHANTVTIRGTPDMIKVAEEM--IAAQDLPEPE---------- 313 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 V L+V + EV D + Q+G + + S PS + Sbjct: 314 -------------VMLEVEVLEVSHDRMSQLGINWPNSFTVSTPSSADTWGVLHHLPINA 360 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + S F T LA P + A + + A G + + SS+ Sbjct: 361 LNVSGLSATADFKL--------TDTDANLLASPRIRARNKEKARIMIGDKVPVISSSSTP 412 Query: 303 G------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MP 349 + D G+ L P V G +G+++ EVS +++G+ Sbjct: 413 STSGPSFTQMIQYLDVGIKLEVEPQVYRDGDVGIKLNLEVSNITNTISSGNSQGLSSLAY 472 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R A T++ L G T ++ GL+ D+ ++ +P L ++P+LG LF + + ++TE Sbjct: 473 QIGTRSASTSLRLRDGETQIMGGLISDEDRRNANKVPGLGQLPVLGRLFSDHGGDHKKTE 532 Query: 410 IFIAATPFLVKPVAMRD 426 I + TP +V+P D Sbjct: 533 IVLQITPHIVRPQVAAD 549 >gi|238754119|ref|ZP_04615477.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473] gi|238707615|gb|EEP99974.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473] Length = 422 Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 63/288 (21%), Positives = 109/288 (37%), Gaps = 25/288 (8%) Query: 157 SQRAVELSETFLSQSGRNQYANSS--SKKVMNLLNIAGE------------------DQV 196 A E++ G + K N L I QV Sbjct: 133 HAEAEEIAANLNVNHGGLLSPQGRVFADKRTNRLLIRDTAESIAALKAWLSELDSPLQQV 192 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---DR 253 L I + + L ++G + I SG S +F + + + Sbjct: 193 QLAAHIVTISSESLHELGVRWGIPARDSGGSALRINNFNVGLPIQNSAITAGFNIARISG 252 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + L ALE+ + +A P LT Q+AS G Y S G T+V + Sbjct: 253 QLLDLELSALEQENQVEIIASPRLTTSHQQTASIKQGTDIPYSVSSGKNGGTTVEFKEAV 312 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLA 371 + + TP +L G+I L+++ + P + + + + ++ T + + G TIVL Sbjct: 313 LGMEVTPRILGAGKITLKLKISQNMPGMAIKRGENESLAIDKQEIKTQITVNDGETIVLG 372 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ + + +P+LS IP+LG LF+ + + E+ I TP L+ Sbjct: 373 GIFQQKNSRGANKVPVLSDIPLLGHLFKQTVNAKSRRELVIFITPRLI 420 >gi|52426025|ref|YP_089162.1| GspD protein [Mannheimia succiniciproducens MBEL55E] gi|52308077|gb|AAU38577.1| GspD protein [Mannheimia succiniciproducens MBEL55E] Length = 478 Score = 193 bits (489), Expect = 8e-47, Method: Composition-based stats. Identities = 79/423 (18%), Positives = 155/423 (36%), Gaps = 46/423 (10%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P VA L + A + I D +S+ L K + + V ++ Sbjct: 59 APLVATLQQLALEQNANLVIDDE---LEGTLSLKLEK---VNLERLFHSVA----KLKNL 108 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT---LRRFIADSNI 136 +H + +Y F KN N+I ++ N + +L T L A + Sbjct: 109 SLHKDKDIYYFTKN----NLIEPSSIAGELKNTENFTALSEPNLVSTTVKLHFAKASEVM 164 Query: 137 RVEMVSDTVVLH--GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 + +L G V + S + + + + + K ++ L+ + Sbjct: 165 KSLTSGTGSLLSPVGSVSFDERSNQLL---------IQDERRSLQNIKNIIAQLDKPI-E 214 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKFV 239 Q+ ++ I + + LK++G + + + ++ +F Sbjct: 215 QIAIEARIVTMNDESLKELGVRWGLLEGVNSAHRIAGSLEANGFADIGQNLNVNFPTSAT 274 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G + + L ALE+ ++ +A P L + +SAS G + Y V+ Sbjct: 275 PAGSVALQVAKIHGRLLDLELTALEQENNVKIIASPRLLTTNKKSASIKQGTEIPYVAVN 334 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKAD 357 V + + L TP + I L + + P + G++ S ++ + Sbjct: 335 RKNDTEHVEFREAVLGLEVTPHISKDNSILLDLIVSQNSPGANIVYGNGNLISIDKQEIN 394 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V G TIVL G+ D I + ++ +P+L IP++ LF ++ E+ I TP Sbjct: 395 TQVFAKDGETIVLGGVFNDTITKSEDKVPILGDIPLIKHLFSKESEKHQKRELVIFVTPH 454 Query: 418 LVK 420 ++K Sbjct: 455 ILK 457 >gi|170717282|ref|YP_001784397.1| type IV pilus secretin PilQ [Haemophilus somnus 2336] gi|168825411|gb|ACA30782.1| type IV pilus secretin PilQ [Haemophilus somnus 2336] Length = 377 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 100/254 (39%), Gaps = 17/254 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I ++ ++ +F Sbjct: 122 EQIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGNLAANGFQHLTEQLNVNFATTA 181 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + QSAS G + Y Sbjct: 182 TPAGSIALQIAKINDRLLDLELTALERENNVEIIASPRLLTTNKQSASIKQGTEIPYVIT 241 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKA 356 + V + + L TP + I L + + P + G M S ++ Sbjct: 242 GKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNSPGSRITYGQNEMVSIDKQEI 301 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + + +PLL IPIL LF ++ E+ I TP Sbjct: 302 NTQVFAQDGETIVLGGVFHDTITKGVDKVPLLGDIPILKRLFSRESERHQKRELVIFVTP 361 Query: 417 FLVKPVAMRDLSRP 430 +++ ++ +P Sbjct: 362 RIIRSEQPNEIIKP 375 >gi|299066099|emb|CBJ37280.1| putative type II secretory pathway, gspd-related protein [Ralstonia solanacearum CMR15] Length = 792 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 78/434 (17%), Positives = 150/434 (34%), Gaps = 67/434 (15%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 S S+ + P + A + + + + +++ ++ + + + VS+ D Sbjct: 185 SAASIMRKPVSLQFRDANVRMVFEALSRTTGLNVIFDRDVRTDLK---TTIFVSNAALDD 241 Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 V V + T++++ + + L D H++ Sbjct: 242 TVDMILLQSQLAKKVLNANTVFIYPATPAK-----QQEYQDLKVRTFQLSNTDAKHIDTL 296 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L+ + I + ++TV + TI+ ++R ++ L + Sbjct: 297 LKNLLKIKEIVTDERANTVSIRATPETIRVAERM--IAAQDLPEPE-------------- 340 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 V L+V + EV RD L +G P+ Sbjct: 341 ---------VMLEVEVLEVSRDRLTDLGIDW--------PNSFSLGTPSSAATWGALHHL 383 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 L + T LA P + + + A G + + SS Sbjct: 384 TVNQLTASGLSATANFKLTDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSG 443 Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYR 352 S+ D G+ L P V +G+++ EVS +++ + Sbjct: 444 PVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNSQTGLSSLAYQIG 503 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A TT+ L G T +L GL++D+ + IP L ++P+LG LF N + ++TEI + Sbjct: 504 TRNASTTLRLKDGETQILGGLIQDEDRDAANKIPGLGQLPVLGRLFSNHNGDHKKTEIVL 563 Query: 413 AATPFLVKPVAMRD 426 TP +V+P D Sbjct: 564 QITPHIVRPQLAAD 577 >gi|319775638|ref|YP_004138126.1| competence protein E [Haemophilus influenzae F3047] gi|317450229|emb|CBY86445.1| competence protein E [Haemophilus influenzae F3047] Length = 445 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|301169135|emb|CBW28732.1| predicted fimbrial transporter [Haemophilus influenzae 10810] Length = 445 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IPI+ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPIIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|170721354|ref|YP_001749042.1| general secretion pathway protein D [Pseudomonas putida W619] gi|169759357|gb|ACA72673.1| general secretion pathway protein D [Pseudomonas putida W619] Length = 745 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 71/337 (21%), Positives = 122/337 (36%), Gaps = 14/337 (4%) Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 ++ + G Q + + + S G V++++ Sbjct: 382 TTSLTSLNGTGSQSGQGLSGMGMNTQASIREAPSEDDYEDTGQPEASSAESADGSVKSLE 441 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 +S R + + + L+ + QV ++ I EV+ +G Sbjct: 442 ESVRITAQKSSNQLLVRTRPAQWKEIESAIKRLD-SPPLQVQIETRILEVKLTGDLDLGV 500 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD------RFSFETVLHALERATAI 269 Q + + S + A+ G + G G + + L ALE Sbjct: 501 QWYLGRLAGNSSSTTVANESGSQGALGAGGVALGSASMFYSFVSSNLQVALRALETRGLT 560 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLS 324 + L+ P+L ++ Q A G S T +SV GV+L P + Sbjct: 561 QVLSAPSLVVLNNQQAQIQVGDNIPISQTTVNTSDSDTTLSSVEYVQTGVILDVVPRINP 620 Query: 325 PGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G + + IQ +VS+ P R T V + SG T++L GL+K D Q Sbjct: 621 GGLVYMDIQQQVSDADDSAVTTTQPNPRISSRAVSTQVAVQSGQTVLLGGLIKQDNGQSD 680 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P LS IP LG LF ++ +R+ TE+ + TP +V Sbjct: 681 TRVPGLSSIPGLGWLFGSTSKSRDRTELIVLITPRVV 717 >gi|227822850|ref|YP_002826822.1| general secretion pathway protein D, GspD [Sinorhizobium fredii NGR234] gi|227341851|gb|ACP26069.1| general secretion pathway protein D, GspD [Sinorhizobium fredii NGR234] Length = 692 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 75/366 (20%), Positives = 139/366 (37%), Gaps = 32/366 (8%) Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 +++ G+ G V + ++ D++ E A E ++ + + Sbjct: 334 QSVLATGQAGGGTVV------RQSVVAPDLVAETVAAGGEGAPMEMPPEAAVEAASAPVS 387 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 V + ++ + + ++++ L++ QV L+ IAE Sbjct: 388 SVPSVVADIENNALLISTTAREY-----------QRIEQILRQLDV-LPTQVFLEAVIAE 435 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V + + G + +S S A G + F+ + L AL Sbjct: 436 VSLNDELKFGLRWYFEHNSDAFGLSDLAS--GAVAATFPGFNWTHLAGDAQI--ALQALS 491 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLH 317 T ++ ++ P L I+ Q A G Q T + + SV D G++L Sbjct: 492 SVTNVKVISSPNLMVINNQQAKLQVGDQVPTVTQTSTSTSSADAAIVNSVELKDTGIILA 551 Query: 318 FTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + S GR+ L IQ EVS V + D P+ + RK T V + G ++ L GL+++ Sbjct: 552 VTPRINSSGRVMLDIQQEVSNVVETTTSGIDSPTIQQRKISTRVVVNDGESLALGGLIQE 611 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 ++ +P+L IP+ G F++ TE+ I P +V+ V D + Sbjct: 612 KKSLGQKKMPVLGDIPLFGNAFKSKTDGINRTELIIFIRPRIVRDVQEARQV--TDEFRQ 669 Query: 437 EDDAKA 442 + D Sbjct: 670 QFDFDR 675 >gi|229846521|ref|ZP_04466629.1| competence protein E [Haemophilus influenzae 7P49H1] gi|229810614|gb|EEP46332.1| competence protein E [Haemophilus influenzae 7P49H1] Length = 445 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|145640400|ref|ZP_01795984.1| competence protein E [Haemophilus influenzae R3021] gi|145274986|gb|EDK14848.1| competence protein E [Haemophilus influenzae 22.4-21] Length = 445 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|329122312|ref|ZP_08250900.1| competence protein E [Haemophilus aegyptius ATCC 11116] gi|327473873|gb|EGF19290.1| competence protein E [Haemophilus aegyptius ATCC 11116] Length = 445 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V + S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEGVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|145630388|ref|ZP_01786169.1| competence protein E [Haemophilus influenzae R3021] gi|144984123|gb|EDJ91560.1| competence protein E [Haemophilus influenzae R3021] Length = 447 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|260582299|ref|ZP_05850092.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae NT127] gi|260094667|gb|EEW78562.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae NT127] Length = 447 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 17/251 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKPVAMRDL 427 ++K D+ Sbjct: 426 HILKAGETLDV 436 >gi|145628805|ref|ZP_01784605.1| competence protein E [Haemophilus influenzae 22.1-21] gi|145638655|ref|ZP_01794264.1| competence protein E [Haemophilus influenzae PittII] gi|144979275|gb|EDJ88961.1| competence protein E [Haemophilus influenzae 22.1-21] gi|145272250|gb|EDK12158.1| competence protein E [Haemophilus influenzae PittII] gi|309750149|gb|ADO80133.1| Outer membrane secretin ComE [Haemophilus influenzae R2866] Length = 445 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|295096434|emb|CBK85524.1| general secretion pathway protein D [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 638 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 105/265 (39%), Gaps = 18/265 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFV 239 +KV++ L+I QV ++ IAEV+ +G Q + G G + + + Sbjct: 331 EKVIDKLDIRRP-QVLVEAIIAEVQDGNGLDLGVQWTSKHGGVQFGATGLPISQIKNGTM 389 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + F ++ AL L+ P++ + + ASF G + S Sbjct: 390 KGASFTGLATGFFNGDFGALVTALSTDGKNDILSTPSVVTLDNKEASFNVGQDVPVLSGS 449 Query: 300 SS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353 + SV G L P + I L+I+ EVS P++ Sbjct: 450 QTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDNSATEDSSLGPTFNT 509 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R + V + SG T+VL GL+++ +Q +PLL IP++G LFR + + + + + Sbjct: 510 RTINNEVMVHSGQTVVLGGLMENVTKQSVSKVPLLGDIPLVGQLFRYTSQDTSKRNLMVF 569 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVED 438 +++ DD+YS Sbjct: 570 IHTTVLRD---------DDNYSAAS 585 >gi|94313628|ref|YP_586837.1| putative secretion type II protein [Cupriavidus metallidurans CH34] gi|93357480|gb|ABF11568.1| Putative secretion type II protein; gspD(secretin)-like protein [Cupriavidus metallidurans CH34] Length = 734 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 71/429 (16%), Positives = 156/429 (36%), Gaps = 67/429 (15%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 + S+ + P + A I + + + +++ ++ + + + V++ D Sbjct: 170 AAGSIMRTPVTLQFRDANIRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNAAIED 226 Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 V V + T++++ + + + L D ++ Sbjct: 227 AVDLILLQSQLDKKVLNANTLFIYPATPAK-----QQEYQELKVRTFQLSNVDSKQVQSL 281 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L+ + + V+ ++TV + G TI+ +++ ++ L + Sbjct: 282 LKSLLKIKEVVVDERANTVTIRGTPDTIRVAEQM--IAAQDLPEPE-------------- 325 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 V L+V + EV R+ L +G + + + P+ + + + S Sbjct: 326 ---------VMLEVQVLEVSRERLTDLGIAWPNSFTMATPASATTWGVLHHLTANELEVS 376 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303 F T LA P + + + A G + + SS+ Sbjct: 377 PLSATANFKL--------TDTDANLLASPRIRTRNKEKARILIGDKVPVISSSSTPSTSG 428 Query: 304 ---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYR 352 ++ D G+ L P V +G+++ EVS + +G+ Sbjct: 429 PSFTQTIQYLDVGIKLEVEPQVYRDNDVGIKLALEVSNITKTIQSGNAQTGLSSLAYQIG 488 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A T++ L G T +L GL+ D + + +P L ++P++G LF + + +TEI + Sbjct: 489 TRSASTSLRLRDGETQILGGLISDQDRTSADKVPGLGQLPVVGRLFSDHNGDHVKTEIVL 548 Query: 413 AATPFLVKP 421 TP +V+P Sbjct: 549 QITPHIVRP 557 >gi|145634568|ref|ZP_01790277.1| competence protein E [Haemophilus influenzae PittAA] gi|229844405|ref|ZP_04464545.1| competence protein E [Haemophilus influenzae 6P18H1] gi|145268113|gb|EDK08108.1| competence protein E [Haemophilus influenzae PittAA] gi|229812654|gb|EEP48343.1| competence protein E [Haemophilus influenzae 6P18H1] Length = 445 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLAGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|16272383|ref|NP_438596.1| competence protein E [Haemophilus influenzae Rd KW20] gi|260580502|ref|ZP_05848330.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae RdAW] gi|1169008|sp|P31772|COME_HAEIN RecName: Full=Competence protein E; AltName: Full=DNA transformation protein ComE; Flags: Precursor gi|1573410|gb|AAC22094.1| competence protein E (comE) [Haemophilus influenzae Rd KW20] gi|260092844|gb|EEW76779.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae RdAW] Length = 445 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|254283571|ref|ZP_04958539.1| general secretion pathway protein D [gamma proteobacterium NOR51-B] gi|219679774|gb|EED36123.1| general secretion pathway protein D [gamma proteobacterium NOR51-B] Length = 682 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 88/477 (18%), Positives = 160/477 (33%), Gaps = 61/477 (12%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 L+ + L P A + +NA +I+ IG+ ++I ++ + Sbjct: 147 RLENVSAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDIRSNIGRIREIIDRMDSSAVRST 206 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 V V++ + G ++ ++ D L I Sbjct: 207 EVVRLKYGVAEDIVQMLRTLETDEGEAGGAGEEVT-LVADKRTNSVVVTADELNSGRIKQ 265 Query: 123 LEMTLRRFIADSN----IRVEMVSDTVV---LHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 L L + S I +E + V L +++ I + + S Sbjct: 266 LITYLDTPLEQSGNVKVIYLEYANAAEVAEVLTRVMQNITRLDDNGQRERSAGGNSTIEA 325 Query: 176 YANSSS-------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 +++ + V+ L+I QV ++ I E+ +++G Q Sbjct: 326 DEGTNALIITADADEMAALEAVIARLDIR-RAQVLVEAIIVEMEVVEGQELGLQWLFAND 384 Query: 223 SSGPSKSFAADF------------------------------GGKFVSEGGDFSVKGVLD 252 S + + G G V D Sbjct: 385 SGFYGSNISTSSAQRARNAAIADAILPGDGDSSGDIGITDLAGALSQVPGATLGWGAVDD 444 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------G 303 + +L+ALE L+ P+L + + A T G Q + T S + Sbjct: 445 DLTMTVILNALETQGNANILSTPSLLTLDNEEAYITVGQQVPFVTGSFTNTGSGDSARNP 504 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 ++ + G+ L TP V + L I EVS + RK +T V Sbjct: 505 FQTIERQNVGITLKVTPQVNEGDSVVLDIVQEVSSISQQLLVASDVITNERKIETKVLAS 564 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G +VL GL+KD++Q ++G+P+LS IP+LG LFRN ++ + + P +V+ Sbjct: 565 DGDIVVLGGLVKDEVQDSQQGVPILSSIPLLGRLFRNDVVEVSKSNLLVFIRPTIVR 621 >gi|309972408|gb|ADO95609.1| Outer membrane secretin ComE [Haemophilus influenzae R2846] Length = 445 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|297180471|gb|ADI16685.1| type II secretory pathway, component puld [uncultured gamma proteobacterium HF0010_05D02] Length = 666 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 87/476 (18%), Positives = 167/476 (35%), Gaps = 59/476 (12%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 L + L P A + +NA +I+ I + KI +++ + + Sbjct: 133 RLDNVSAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDIRANIDRIAKIIDRMDQSAVKKT 192 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 V V+ + +A+++ ++ D + I Sbjct: 193 EVVKLRYGVATDVVEMLKTLEKSRAGEGADANDEASLVADKRTNSVIVTADEVSIERIKG 252 Query: 123 LEMTLRRFIADS-NIRV------EMVSDTVVLHGMVRTIQDSQ-------RAVELSETFL 168 L L + S N+RV + VL +++ + RA +++ + Sbjct: 253 LVDYLDIPLEQSGNVRVMYLEYADATEVAEVLTRVMQNLARLDDESSGRTRAANAAKSTI 312 Query: 169 SQS--------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + ++ + V+ L+I QV ++ I E+ +++G Q Sbjct: 313 EADEGTNSLIITADTDEMAALEAVIARLDIR-RAQVLVEAIIVEIDVTEGRELGLQWLFA 371 Query: 221 GSSSGPSKSFAADFGGKFVS---------------------------EGGDFSVKGVLDR 253 S + + G + G F V + Sbjct: 372 NDSGLYGSNISPARQGSNAAIAQAILPEDAASTEIGVRDLAGALSQVPGTTFGWGVVDEN 431 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------GA 304 + T+L+ LE+ L+ P+L + + A T G Q + T S + Sbjct: 432 LTMTTILNTLEKQGNTNILSTPSLLTLDNEEAFITVGQQVPFVTGSYTNTGAANGVANPF 491 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 ++ + GV L TP + + + I EVS + RK +T V Sbjct: 492 QTIQRENVGVTLQVTPQINEGDSVVMDIVQEVSSISQQALSASDVITNERKIETKVLAKD 551 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G +VL GL+KDDIQ ++G+PLLS IP++G LFRN + ++ + + +++ Sbjct: 552 GDIVVLGGLVKDDIQDSQQGVPLLSGIPVVGRLFRNDVVSVTKSNLLVFIRSTIIR 607 >gi|145636296|ref|ZP_01791965.1| competence protein E [Haemophilus influenzae PittHH] gi|145270461|gb|EDK10395.1| competence protein E [Haemophilus influenzae PittHH] Length = 445 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|148263871|ref|YP_001230577.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4] gi|146397371|gb|ABQ26004.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4] Length = 944 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 68/434 (15%), Positives = 154/434 (35%), Gaps = 53/434 (12%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV-PVDVQDVLVSDPTKADVVVHSP 84 + + A + + K + + + L+ D++ + A+V + Sbjct: 523 MAAPAKEPEAFAELPSSAVSKQVTKKVYTGRKVTLEFSDADIRKIF---QLIAEVSNLN- 578 Query: 85 RTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 +L +V G ++ L+ Q L++ + + E + + + ++ + + Sbjct: 579 ---FLIADDVSGTISIKLVNVPWDQALDVILDTKGLGMQREGNIVQIKPKAKMQSQADEE 635 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM------NLLNIA------ 191 R ++ +++ ++ S + ++ N + + Sbjct: 636 IAAKKARERAMELRTEVFDVNYAAVADIVTQFNTLKSERGIITSDVRTNRVIVKDIATAI 695 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------SSSG 225 E QV ++ I E + ++ +G Q + + G Sbjct: 696 EDMKSLLKNLDSPEKQVMIEARIVEAQTSFVRDLGVQWGLHYVDGSASVAGISRFDTGFG 755 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + G S + + L A A I+ ++ P + ++ + A Sbjct: 756 GVVTPPPTSGTSGPGAAAGMSFGKLASNIQIDMRLSAAVTAEQIKIISSPRVVTLNNKPA 815 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 + G Y+T S+ T + + L TP + S G IG++I+ Sbjct: 816 KISQGASIPYQTTSAEG--TKTEFVEAALTLEVTPHITSDGSIGMKIKAS----NNSAGT 869 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 G P ++A T + + +G T V+ G+ D +G+P L IP+LG LF+++ N+ Sbjct: 870 GSPPPINKKEATTELLVKNGETTVIGGIYVDSETDNDKGVPFLQDIPLLGWLFKSNTKNK 929 Query: 406 EETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 930 SKNELLIFITPKII 943 >gi|90407251|ref|ZP_01215438.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3] gi|90311674|gb|EAS39772.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3] Length = 739 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 65/292 (22%), Positives = 113/292 (38%), Gaps = 18/292 (6%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 ++ G V + D T + + K ++ +L+I QV ++ + Sbjct: 445 AILSSGDVSLLSDRGSVNVDKRTNMLLLKDTARVIKAVKNMIKVLDIPVR-QVVIEARMV 503 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKS--------------FAADFGGKFVSEGGDFSVKG 249 V + +++G + + + S S + + F + Sbjct: 504 TVNDSVGEELGIRWGNSNVNGDLSTSGSLDGLTNGSLDERLNVNLPVVGAAGRIAFRIAK 563 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + + L ALE+ +A P +T Q+A G + Y +SS GAT+V+ Sbjct: 564 LASGKILDLELSALEKENKAEIIASPRITTADQQTAYIEQGTEIPYVESASS-GATAVSF 622 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + L TP + +I L + VI G S ++ T V + +G T Sbjct: 623 KKAVLSLQVTPQITPDNKIILDLVITQDSKGDVIPTGLGQAVSINTQEIKTQVLVGNGET 682 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IVL G+ + I + +P L IP LGALFR + ++E+ I TP LV Sbjct: 683 IVLGGIYQQRIIDTVQKVPFLGDIPFLGALFRTTIKENRKSELLIFVTPRLV 734 >gi|78222195|ref|YP_383942.1| type II and III secretion system secretin [Geobacter metallireducens GS-15] gi|78193450|gb|ABB31217.1| type II and III secretion system protein:NolW-like protein:Secretin/TonB, short-like protein [Geobacter metallireducens GS-15] Length = 870 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 73/447 (16%), Positives = 156/447 (34%), Gaps = 55/447 (12%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVE----IGKGKKISIGLNKVIILQV-PVDVQDVLV 71 ++ P ++ E+ + + + + + + L+ D++ + Sbjct: 434 ITAAPVASEPAKQTESERSAPVVVKSQAVSPTAAADGKKVYTGRRVTLEFSDADIRKIF- 492 Query: 72 SDPTKADVVVHSPRTMYLFGKNV-GQANVIL----IG---------------HDGKQMLN 111 A+V + ++ G +V G ++ L DG + Sbjct: 493 --QLIAEVSNLN----FIVGDDVTGTISLKLVNVPWDQALDVILENKGLGMQRDGNIVQI 546 Query: 112 LDILIERDIAHLEMTLRR------FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 +A E ++ + V + V+ + + + Sbjct: 547 RPKSKIMTLADEEQKAKKSREQGMELKTEVFDVNYAAVGDVVTQFNTLKSERGMISQDAR 606 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---- 221 T + + ++ L+I E QV ++ I E + +++G Q I Sbjct: 607 TNRVIVKDIAPVVAEMRNLLKSLDIP-EKQVMIEARIVEASSTVTQELGIQWGIHARDAN 665 Query: 222 ---------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G A G + ++ S + L AL I+ + Sbjct: 666 TIGVTNADVGFGGILTGLAPTAGTFGPGAAAGITFGKLISGGSLDLKLSALASGERIKII 725 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + P + ++ ++A + G Y TVS+ T + + L TP + S G I ++I Sbjct: 726 SSPKVVTLNNKAAKISQGQSIPYSTVSAEG--TKTEFVEAALTLEVTPHIASDGSISMKI 783 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + + +P+ ++A T + + +G T V+ G+ D+ Q +G+P IP Sbjct: 784 KATNNSAAPAPTGA-VPAINKKEATTELLVRNGETTVIGGIYVDNDSQADQGVPFFKDIP 842 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 +LG LF++S + + E+ I TP +V Sbjct: 843 LLGWLFKSSNTQKIKNELLIFITPKIV 869 >gi|319898044|ref|YP_004136241.1| competence protein e [Haemophilus influenzae F3031] gi|317433550|emb|CBY81934.1| competence protein E [Haemophilus influenzae F3031] Length = 445 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGIRWGIFNPTENARRVAGSLAGNSFENIADNLNVNFATTA 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|148262762|ref|YP_001229468.1| general secretion pathway protein D [Geobacter uraniireducens Rf4] gi|146396262|gb|ABQ24895.1| general secretion pathway protein D [Geobacter uraniireducens Rf4] Length = 641 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 69/321 (21%), Positives = 114/321 (35%), Gaps = 37/321 (11%) Query: 137 RVEMVSDTVVLHGMV--RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---- 190 + VL G+V + + + + + K N L I Sbjct: 278 NADATEVAKVLDGVVKGSSAAAAPSQPGAANAPQQSPFEGGKISITPDKATNSLVIMASP 337 Query: 191 --------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--- 233 QV ++ IAEV LK +G Q + G +S + + A Sbjct: 338 TDYQNLIQVIQKLDKRRRQVFVEAVIAEVSLSKLKDLGVQWGVLGGASNGTATAAGLYDP 397 Query: 234 --------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + G +F VL AL+ A+ L+ PT+ + A Sbjct: 398 QDTFTTLLTALANLKSAGITIPDLTGTALNFSAVLRALDSLGAVNVLSTPTIMTSDNKEA 457 Query: 286 SFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 G + + +++ S+ D G+ L TP + + L I E+S Sbjct: 458 EIFVGENVPFKGNVTISNTTTPSFQSIERKDTGITLKITPQISEGEYVKLDIYQEISAIS 517 Query: 341 IGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + R A T+V + T+V+ GL++D Q+ IPLL IP LG LF+ Sbjct: 518 NTTVSGASDLITTKRSAKTSVAVKDKDTMVIGGLIQDREQETVNKIPLLGDIPFLGWLFK 577 Query: 400 NSRFNREETEIFIAATPFLVK 420 R++T + I TP +V+ Sbjct: 578 FKNTTRQKTNLLIVLTPRIVR 598 >gi|292670351|ref|ZP_06603777.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648082|gb|EFF66054.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 426 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 88/436 (20%), Positives = 168/436 (38%), Gaps = 31/436 (7%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T ++ + L S + A + + + + + + + ++ +V V Sbjct: 2 TIAALVCMMLLSVPAAAAPVTINVTGGD--VRTVLLAVARMGNLPLIVDD----RVDGTV 55 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD----GKQMLNLDILIERDIAH 122 L + + +V + R +++ ++ G + G D +++ + Sbjct: 56 TAHLTGEAEEVLHLVAAARGIHI-ERHGGV--FLAFGADARGENRRVHTYAVRFADPEEL 112 Query: 123 LEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + V +D G QR + + T + + Sbjct: 113 AHAANLSLTGEGKRAIVSKNNDERENEGSDSDSDAQQRVLVDTATNTLLFYGTESEALAV 172 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAA 232 +++++ L+ QV+L+ + + ++ KQ+G S G + Sbjct: 173 REIISALD-REPQQVSLEARVVAISKEAAKQLGVDWSWSSLPQYPRVQYDRGGSWRVGER 231 Query: 233 DFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + G S G + F + + AL + LA P +T I G+ A Sbjct: 232 NAGTGGTSAPGIIRFGRGPEGLPYEFYYSAAIRALITEGKAKMLARPNVTTIQGREALIN 291 Query: 289 SGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 G + V++S T+ + + G++L +TP V + G I R+ TEVS PV V Sbjct: 292 IGAEVPVPRVATSNNVTTTGIEYREAGIILRYTPRVTADGNIVARVHTEVSTPVY-VEDL 350 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 ++ R ADTTV L +G T+V+ GL+ D + IP L +P+LGA FR+ R +R Sbjct: 351 KAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRSLSKIPFLGDLPVLGAFFRSVRTSRT 410 Query: 407 ETEIFIAATPFLVKPV 422 ETE+ I T ++ Sbjct: 411 ETELMIFLTAHVLDET 426 >gi|251788920|ref|YP_003003641.1| general secretion pathway protein D [Dickeya zeae Ech1591] gi|247537541|gb|ACT06162.1| general secretion pathway protein D [Dickeya zeae Ech1591] Length = 716 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 116/312 (37%), Gaps = 37/312 (11%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 T+V+ G T++ + L T R+ ++V+N L+I QV + Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 402 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------- 241 + IAE++ +G Q + + + A + Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMIQFPNSNASNNIPISTAMIGTDQFRSDGTLTTAY 462 Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--- 294 G + R ++ +L AL LA P++ + A+F G + Sbjct: 463 ANALGSFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLT 522 Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---M 348 S S +V G+ L P + + L+I+ EVS G ++ + Sbjct: 523 GQQTTMGSGSNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNSSTNSSLG 582 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ R + V + +G T+V+ GLL + +PLL IP LG+LFR+ + + Sbjct: 583 VTFNTRTVNNAVMVTNGETVVVGGLLDKSTIETNNKVPLLGDIPWLGSLFRSKSQSMSKR 642 Query: 409 EIFIAATPFLVK 420 + + P +++ Sbjct: 643 NLMLFLRPTIIR 654 >gi|148997|gb|AAA25012.1| A mini-Tn10kan insertion in ORF E causes a deficiency in transformation. ORF E is 24% identical to the products of the filamentous phage gene IV and of pulD, a gene in the pulC operon of Klebsiella; ORF; putative [Haemophilus influenzae] Length = 441 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|294012239|ref|YP_003545699.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] gi|292675569|dbj|BAI97087.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] Length = 543 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 87/257 (33%), Positives = 123/257 (47%), Gaps = 10/257 (3%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 +I+ SS A + G L + L ALER ++TLAEPTL Sbjct: 260 NISNSSVTGRGGNGALDLLLPTTAFGALGWVTNLGGLRISSALDALERKGLVKTLAEPTL 319 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 A+SG++ASF +GG+ + G +V +GV L FTPTVLS G I L Sbjct: 320 VALSGETASFLAGGEFPIPVAQNGNGTGSGSNSITVEFKPFGVSLGFTPTVLSDGIINLV 379 Query: 332 IQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++ EVS +N +P R+A T VEL G + +AGLL++D Q IP+ Sbjct: 380 VEPEVSSIDPSASVQINGLVIPGLLTRRAKTVVELRDGQSFAIAGLLRNDFQDTIRQIPV 439 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L +PI+GALFR+S F ++ETE+ + TP LVKP+ D+ P D + F R Sbjct: 440 LGSLPIIGALFRSSGFQKQETELVMIVTPRLVKPMRADDVRLPTDRVGNPHELDLFLMGR 499 Query: 448 VNKIYGPKEASEVEGQN 464 +K G + Sbjct: 500 TDKAVGINPLNPDAMPP 516 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 12/244 (4%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M L + + LP +A A +N+ ++ + LNK +L V LV Sbjct: 1 MLASLLALGAGASLLPMQAQAQVASLNV--SNANHAGQLDVPLNKSQVLTVDRPFAKALV 58 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 + ADV+ + R++Y+ GK +G ++ L + +D+ + D+ L+ L I Sbjct: 59 GNAEIADVLPMTNRSVYVLGKKMGTTSLTLYDSRNMMIAVVDVAVGPDVVTLKRQLSELI 118 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 I + +D ++L G V + +AV ++ T+ S+K++N+L++ Sbjct: 119 PGEQIGARISNDALILTGTVSSAAAVDQAVRIASTYAGG----------SEKIVNMLSVG 168 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV L+V +EV R K++G H+ +S + G S+ Sbjct: 169 ASQQVMLEVRFSEVNRQAAKELGLNHTFLNNSGKFVGGMGENGLAGVPVTGNTSSMGSGT 228 Query: 252 DRFS 255 S Sbjct: 229 SNSS 232 >gi|78484595|ref|YP_390520.1| type II and III secretion system protein [Thiomicrospira crunogena XCL-2] gi|78362881|gb|ABB40846.1| Type II secretion pathway protein D [Thiomicrospira crunogena XCL-2] Length = 703 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 74/399 (18%), Positives = 141/399 (35%), Gaps = 43/399 (10%) Query: 55 NKVIILQVPVDVQDVLVSDPT---------KADVVVHSPRTMYLFGKNVGQANVILIGHD 105 NK + V++S AD+ V P G+ VI + + Sbjct: 216 NKQFNVSFDERSNRVILSGDQDTRREMRALIADLDVSVPSE--------GRVQVIYLHYA 267 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 L + L ++ S + + V + R +E Sbjct: 268 KAAELVPVLQKIATNRSLLSSVSSDAKTSEATIPDATGNGVQVNQLDDKTLKSRISIEAE 327 Query: 166 TFLSQS--GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 ++ S K V+ L+I QV ++ + EV ++G + G + Sbjct: 328 ERMNAIIISAPPGVVSVLKTVIKQLDIR-RAQVLIEAILVEVTETKQAELGVEWGAAGPN 386 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLD-------------RFSFETVLHALERATAIR 270 +F+ + G + + + ++ AL + Sbjct: 387 GVGLINFSGTIPTIIGNAGNPAAQANAIGTGVNAAFGEVSADGTGWGALIRALNSDSEAN 446 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------TGATSVTTHDYGVVLHFTPT 321 L+ PTL + + A G + ++T S + ++ + G+ L TP Sbjct: 447 ILSTPTLLTLDNEEAEIVVGKEVPFQTGSYTSTGTSSTPTNPFNTIERKNVGLSLKVTPQ 506 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + L I E+S+ + +A D+ R+ T V + G IVL GLL + ++ Sbjct: 507 INEGDEVFLEINQEISDVIPKGDAVDV-QTSKRQIKTRVIVGDGNVIVLGGLLTEKETEV 565 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++ +P L IP LGALFR++ RE+ + + P +V+ Sbjct: 566 EKKVPGLGDIPGLGALFRSTSNEREKVNLMVFLRPVIVR 604 >gi|294055809|ref|YP_003549467.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] gi|293615142|gb|ADE55297.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] Length = 595 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 81/499 (16%), Positives = 169/499 (33%), Gaps = 82/499 (16%) Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69 + + + S++ + ++ ++ V+ + G + ++ + I + P + V Sbjct: 66 AVAGVSVESADAEIPEVTVALPEDSTVVLDLPGQTGSVEAGTVEEEETISVDFPDEDVRV 125 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 ++ + A++ + + + VG+ ++ L +++ + + + + + Sbjct: 126 ILFN--VAELFDLN---LVVPEALVGRTSIKLHNVTWREVFEVVLEPLGYAYIEDRNIIK 180 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + ++I E V+ TV+ RA ++ + + NLL Sbjct: 181 VKSVADIAAEPVTTTVI-------AIKHARAADIMGSIAPLVDGAAGGKMVADSRKNLLV 233 Query: 190 I------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 I +QV ++ + EV + L+ +G S + F Sbjct: 234 ITERPSQIQKIRDLVDEVDRATEQVMIETKLVEVFDEDLENLGVNWSSLNGYGLSAGPFT 293 Query: 232 A---------------------DFGGKFVSEGGDFSVKGV-------LDRFSFETVLHAL 263 + +FV+ S+ + F +L AL Sbjct: 294 RQWDRSREKSTGTTTEFSPATDNQPAQFVTGNLVDSLASTSRLDTAVFNADQFNVILSAL 353 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHF 318 E + + PT+ ++ + A F G + + + + A V GV L Sbjct: 354 ETLNDTKLVTNPTVVVMNKRPAKFEVGRDYPIREITFNQETGTYEAGGVEETFIGVELEV 413 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP VL G I L + +S V + P R DT V + G T+ L GL Sbjct: 414 TPEVL-GGNIHLDVDPTISALDGTVESFGAIDPIVARRSVDTEVIIKDGYTLALGGLADT 472 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT----------------PFLVK 420 +P+L IP LG LF + + + + I T P +++ Sbjct: 473 QEVNSGTKVPILGDIPGLGRLFSSDSDSLGKRNLIIFITAKTLNPEGSDYRDVIDPRMIE 532 Query: 421 PVAMRDLSRPDDHYSVEDD 439 + + D P H+ +D Sbjct: 533 EMGITDYEVPGYHFREGND 551 >gi|310765643|gb|ADP10593.1| Protein transport protein hofQ precursor [Erwinia sp. Ejp617] Length = 414 Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 72/430 (16%), Positives = 161/430 (37%), Gaps = 35/430 (8%) Query: 8 FFTMMSIFLFSSNPSVA-KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 ++ +++ +P A + P + A + + +++++ + + + + + Sbjct: 1 MLRILGLWMALISPLAAVQPPLTLAFDDAPVAQVLQALADYQQLNLMVAPGVEGHLSLRL 60 Query: 67 QDV--------LVSDPTKADVVVHSPRTMYLFGK---NVGQANVILIGHDGKQMLNLDIL 115 +DV ++ + + +F + Q + + +QML L Sbjct: 61 KDVPWRQALQLVIKTGKL--TMEQQGNVLMVFPEGWQQEQQRKAAIRREEQEQMLPLFDR 118 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 I + ++ + R+ ++ L ++ L++T Sbjct: 119 ILTLVHADAASVNTSLQHERARLMSARGSITLDSRTNSLLLRDTEKALAQT--------- 169 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF- 234 + ++ L++ +Q+ L I + + L+++G ++G + + Sbjct: 170 ------EHWVHQLDVPL-EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLR 222 Query: 235 --GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G LD + L ALE +A P L Q+AS G + Sbjct: 223 VDLATGRPAGVVGFTLAKLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTE 282 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPS 350 Y+ + ++G+T++ + + + TP V + GRI L I V + ++ + Sbjct: 283 IPYEVSTGNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLT 342 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ DT V L G T+ L G+ + +P L IP+LG LFR+ ++ E+ Sbjct: 343 IDKQEIDTQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRREL 402 Query: 411 FIAATPFLVK 420 I TP L++ Sbjct: 403 VIFITPRLIR 412 >gi|301155450|emb|CBW14916.1| predicted fimbrial transporter [Haemophilus parainfluenzae T3T1] Length = 460 Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 17/260 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I S + +F Sbjct: 195 EQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVSGSLDANGFSNIGDNLNVNFATTV 254 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 255 TPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVT 314 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 + SV + + L TP + I L + + P V ++ S ++ Sbjct: 315 NGKNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEI 374 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + + +PLL IP + LF ++ E+ I TP Sbjct: 375 NTQVFAKDGETIVLGGVFHDTITKGIDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTP 434 Query: 417 FLVKPVAMRDLSRPDDHYSV 436 ++K ++++ + H+ Sbjct: 435 HILKQGERMEMAKKEKHFKQ 454 >gi|312961914|ref|ZP_07776411.1| general secretion pathway protein D [Pseudomonas fluorescens WH6] gi|311283724|gb|EFQ62308.1| general secretion pathway protein D [Pseudomonas fluorescens WH6] Length = 740 Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 116/317 (36%), Gaps = 36/317 (11%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------------------Q 195 + A + + + +++K N L + Q Sbjct: 416 EAEQDNAEQGTRDDAPAKSLDAGTRITAQKSSNQLLVRTRPVQWKEIESAIKRLDNPPLQ 475 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------SVK 248 V ++ I EV+ +G Q + + + + A+ G + G S+ Sbjct: 476 VQIETRILEVKLTGELDLGVQWYLGRLAGNSTSTTVANASGSQGALGRGGAGLGAADSLF 535 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-- 306 + + LHALE + L+ P+L ++ Q A G + +TG + Sbjct: 536 YSFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTSDTT 595 Query: 307 ---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTT 359 V GV+L P + G + + IQ +VS+ + P R T Sbjct: 596 LSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASTNGDTPANPRISTRSVSTQ 655 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + SG T++L GL+K D +P L KIP L LF ++ +++ TE+ + TP ++ Sbjct: 656 VAVQSGQTVLLGGLIKQDNADTVSAVPYLGKIPGLRWLFGSTSKSKDRTELIVLITPRVI 715 Query: 420 KPVAMRDLSRPDDHYSV 436 + + D Y Sbjct: 716 --TSSSQARQVTDDYRQ 730 >gi|319789871|ref|YP_004151504.1| general secretion pathway protein D [Thermovibrio ammonificans HB-1] gi|317114373|gb|ADU96863.1| general secretion pathway protein D [Thermovibrio ammonificans HB-1] Length = 638 Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 71/383 (18%), Positives = 129/383 (33%), Gaps = 45/383 (11%) Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-------------------L 115 A R Y F + + ++G + L + L Sbjct: 222 DIAKTFPLPGREYYHFAVDGRTNTLYVVGTPKTIVRVLQLCEKLDRPIKVKEGDIHIIKL 281 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + L D L G V+ + D + + Sbjct: 282 NYAFAEDMAKVLDSLFKD------TSQKKFGLSGPVKVVADKGSNSLIVLASPQDFAVVK 335 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFA 231 V+ +++ QV ++V I E+ D L Q+G + G S Sbjct: 336 D-------VVKSIDVKRP-QVFVEVQIVEMSMDKLLQMGVEWKFLSRGNYVPFGGSLYGN 387 Query: 232 ADFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + S + +L+A + + +A P + + + A Sbjct: 388 LPLQPGYPSASPGLLLGIAKWRDGVPDIGLLLNAYAKEGGVNVIATPQILTLDNEEAEIN 447 Query: 289 SGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 Y T +++ S D G+VL TP + + G + L++ +V + V N Sbjct: 448 ISKVIPYSTGVKYDTNNNPVISYDYKDVGIVLKITPHITASGEVRLKVYEKVEDVVGYAN 507 Query: 345 AG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 A P R+A TTV++ G T+V+ GL+K E +P+L IP++G LF+ + Sbjct: 508 ADQTAPITSKREAKTTVDVHDGQTLVIGGLIKRKKLTTVEKVPVLGSIPVIGNLFKKTGH 567 Query: 404 NREETEIFIAATPFLVKPVAMRD 426 E+T + + TP +V+ Sbjct: 568 QIEKTNLLVFITPHIVRNTEEEQ 590 >gi|325576567|ref|ZP_08147285.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392] gi|325161130|gb|EGC73245.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392] Length = 460 Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 102/260 (39%), Gaps = 17/260 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I S S + +F Sbjct: 195 EQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVGGSLDANGFSNISNNLNVNFATTV 254 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 255 TPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVT 314 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 + SV + + L TP + I L + + P V ++ S ++ Sbjct: 315 NGKNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEI 374 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + + +PLL IP + LF ++ E+ I TP Sbjct: 375 NTQVFAKDGETIVLGGVFHDTITKGVDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTP 434 Query: 417 FLVKPVAMRDLSRPDDHYSV 436 ++K +++R + H+ Sbjct: 435 HILKQGERMEMARKEKHFKQ 454 >gi|229591502|ref|YP_002873621.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25] gi|229363368|emb|CAY50509.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25] Length = 740 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 118/316 (37%), Gaps = 36/316 (11%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------------------QV 196 + A + + + +++K N L + QV Sbjct: 418 AEQDDAEQGATEDAPTKSLDAGTRITAQKSSNQLLVRTRPVQWKEIESAIKRLDNPPLQV 477 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------SVKG 249 ++ I EV+ +G Q + + + + + G + GG S+ Sbjct: 478 QIETRILEVKLTGELDLGVQWYLGRLAGNSTSTTVGNTAGSQGALGGGGAGLGAADSLFY 537 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--- 306 + + LHALE + L+ P+L ++ Q A G + +TG + Sbjct: 538 SFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTSDTTL 597 Query: 307 --VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTV 360 V GV+L P + G + + IQ +VS+ + + P R T V Sbjct: 598 SSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASSSNDTQNNPRISTRSVSTQV 657 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + SG T++L GL+K D + +P L +IP L LF N+ +++ TE+ + TP ++ Sbjct: 658 AVQSGQTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI- 716 Query: 421 PVAMRDLSRPDDHYSV 436 + + D Y Sbjct: 717 -TSSSQARQVTDDYRQ 731 >gi|330958220|gb|EGH58480.1| general secretion pathway protein D [Pseudomonas syringae pv. maculicola str. ES4326] Length = 773 Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 112/305 (36%), Gaps = 19/305 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G +++ S R + + + L+ QV ++ I EV+ Sbjct: 456 TGNGKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVKL 514 Query: 208 DILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 +G Q S T + + G + S + + Sbjct: 515 TGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSIGTGGAALAATDSFFYSFVSNNLQVA 574 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGV 314 L ALE + L+ P+L ++ Q A G + S+T +SV GV Sbjct: 575 LRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTTVNTNASATTLSSVEYVQTGV 634 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLA 371 +L P + G + + IQ +VS+ N+ P R T V SG T++L Sbjct: 635 ILDVVPRINPGGLVYMDIQQQVSDADNSANSTDLNGNPRISTRSVSTQVAAQSGQTVLLG 694 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K D + +P L +IP L LF N+ +++ TE+ + TP ++ + + Sbjct: 695 GLIKQDNAESVSAVPYLGRIPGLKWLFGNTSKSKDRTELIVLITPRVI--TSSSQARQVT 752 Query: 432 DHYSV 436 D Y Sbjct: 753 DDYRQ 757 >gi|222056148|ref|YP_002538510.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32] gi|221565437|gb|ACM21409.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32] Length = 911 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 69/405 (17%), Positives = 148/405 (36%), Gaps = 53/405 (13%) Query: 55 NKVIILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNL 112 + + L+ D++ + A+V + +L +V G ++ L+ Q L++ Sbjct: 519 GRKVTLEFSDADIRKIF---QLIAEVSNLN----FLIADDVTGTISIKLVNVPWDQALDV 571 Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 + + E + + + ++ + + R ++ +++ ++ Sbjct: 572 ILDTKGLGMLKEGNIVQIKPKAKMQSQADEEMATKKARERGMELRTEIFDVNYAAVTDIA 631 Query: 173 RNQYANSSSKKVM------NLLNI------------------AGEDQVTLKVTIAEVRRD 208 S + ++ N + + E QV ++ I E Sbjct: 632 TQFGTLKSDRGIISTDARTNRVIVKDITTAIEDMRMLLKSLDTPEKQVMIEARIVEASTS 691 Query: 209 ILKQIGFQHSITG--------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 ++ +G Q I + G + A G S + Sbjct: 692 FVRDLGVQWGIHYIDGSASVAGISRLDTGFGGQVAIAPTSGTSGPGAAVGMSFGKLASNI 751 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + L A A I+ ++ P + ++ + A + G Y+T S+ T + + Sbjct: 752 QLDMRLSAAVTADQIKIMSTPRVVTLNNKPAKISQGASIPYQTTSAEG--TKTEFVEAAL 809 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L TP + S G IG++I+ G P ++A T + + +G T V+ G+ Sbjct: 810 TLEVTPHITSDGSIGMKIKAS----NNSAGTGSPPPINKKEATTELLIKNGETTVIGGIY 865 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 D + +G+P L IP+LG LF+++ N+ + E+ I TP +V Sbjct: 866 VDSDTESDKGVPFLQDIPLLGWLFKSNTKNKSKNELLIFITPKIV 910 >gi|87122896|ref|ZP_01078763.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121] gi|86161822|gb|EAQ63120.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121] Length = 390 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 5/227 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + IA+V+ + QIG + + S + S S Sbjct: 165 RQIEISARIAQVQNAVESQIGVEWQGQLAGDTLSTASG-LVDLATTSSTSGLSFAVAKSD 223 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 L LE ++EP + GQ A SG + Y+T S T V G Sbjct: 224 DLLALNLSFLESNGLANIVSEPKIVTAEGQMAKIESGTEVPYQT--SDDEGTHVEFKQAG 281 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L P V ++ L ++ + + +G +PS + +T V + + T+VL G+ Sbjct: 282 LTLEVIPFVKQGDKVQLSLK--IYQDAVGEMYNGVPSIETNRINTQVLVGNQETLVLGGI 339 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +D++ + +P +P +GALFR+ +E+ E+ + TP L++ Sbjct: 340 YRDEVWESTSKVPFFGDLPFVGALFRHQAQRQEKVELLVFITPKLLQ 386 >gi|330969406|gb|EGH69472.1| type II and III secretion system protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 325 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 124/283 (43%), Gaps = 22/283 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVS 240 QV + EV R LK+ GSS+ + Sbjct: 40 PSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPL 99 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +F++ +++A+E + TLA P+L A++GQSASF +GG+ + Sbjct: 100 NNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNG 159 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKA 356 S+ ++GV L TPTV+ RI L++ EVSE I + +P+ +R+ Sbjct: 160 EGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRT 219 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT++ L G + V++GL+ + P L IPILGA FR+S+ R+E E+ + TP Sbjct: 220 DTSIALADGESFVISGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTP 279 Query: 417 FLVKPVAMRD--LSRPDDHYS--VEDDAKAFFF--NRVNKIYG 453 LV+P+A S P + + +F ++ G Sbjct: 280 HLVQPLAANARLPSLPGEGLRTYDPSFPRLYFLENGDFDRRDG 322 >gi|283480139|emb|CAY76055.1| Protein transport protein hofQ precursor [Erwinia pyrifoliae DSM 12163] Length = 414 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 72/430 (16%), Positives = 161/430 (37%), Gaps = 35/430 (8%) Query: 8 FFTMMSIFLFSSNPSVA-KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 ++ +++ +P A + P + A + + +++++ + + + + + Sbjct: 1 MLRILGLWMALISPLAAVQPPLTLAFDDAPVAQVLQALADYQQLNLMVAPGVEGHLSLRL 60 Query: 67 QDV--------LVSDPTKADVVVHSPRTMYLFGK---NVGQANVILIGHDGKQMLNLDIL 115 +DV ++ + + +F + Q + + +QML L Sbjct: 61 KDVPWRQALQLVIKTGKL--TMEQQGNVLMVFPEGWQQEQQRKAAIRREEQEQMLPLFDR 118 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 I + ++ + R+ ++ L ++ L++T Sbjct: 119 ILTLVHADAASVNTSLQRERARLMSARGSITLDSRTNSLLLRDTEKALAQT--------- 169 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF- 234 + ++ L++ +Q+ L I + + L+++G ++G + + Sbjct: 170 ------EHWVHQLDVPL-EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLR 222 Query: 235 --GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G LD + L ALE +A P L Q+AS G + Sbjct: 223 VDLATGRPAGVVGFTLAKLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTE 282 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPS 350 Y+ + ++G+T++ + + + TP V + GRI L I V + ++ + Sbjct: 283 IPYEVSTGNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLT 342 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ DT V L G T+ L G+ + +P L IP+LG LFR+ ++ E+ Sbjct: 343 IDKQEIDTQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRREL 402 Query: 411 FIAATPFLVK 420 I TP L++ Sbjct: 403 VIFITPRLIR 412 >gi|293416792|ref|ZP_06659429.1| transporter HofQ [Escherichia coli B185] gi|291431368|gb|EFF04353.1| transporter HofQ [Escherichia coli B185] Length = 412 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 85/425 (20%), Positives = 155/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L PSV P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPSVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + NI ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + +K + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEKWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|330862294|emb|CBX72455.1| hypothetical protein YEW_HH31870 [Yersinia enterocolitica W22703] Length = 271 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 139/264 (52%), Gaps = 20/264 (7%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 MN + + G +QV +K+TIAEV +D + IG S G+ SG + F + KF ++G Sbjct: 1 MNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSGSFQFFKLNGSNKFNAKG-- 58 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++HA+ + R LAEP L+ +SG+SASF GG+ V+++ + Sbjct: 59 -----------ISALVHAINDDSIARVLAEPNLSVLSGESASFLVGGELPL--VNTTANS 105 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVE 361 T +T +G+ L+ V + RI +++ EVS PS+R RKA TT+E Sbjct: 106 TVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNIDGGDAYPSFRTRKAATTLE 165 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L G + +L GL+ ++ + IP + IPILGA FRN+ + +TE+ + AT LV+P Sbjct: 166 LGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRP 225 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFF 445 V+ +++ P ++ + FF Sbjct: 226 VSEKEVELP--NFMHTSTLERFFN 247 >gi|90406756|ref|ZP_01214949.1| putative type II secretory pathway, component EpsD [Psychromonas sp. CNPT3] gi|90312209|gb|EAS40301.1| putative type II secretory pathway, component EpsD [Psychromonas sp. CNPT3] Length = 658 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 107/259 (41%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKF 238 V+ L+I QV ++ I E+ + Q + + G + G + Sbjct: 333 SSVIRKLDIR-RAQVLVEAIIVEISEGNGINLSVQFATSAGGSQFHGNGATTGDAINGAY 391 Query: 239 ----------VSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 VS GV+ ++ +L AL +T LA P++ + Q AS Sbjct: 392 QIRHDGDLSDVSSAISKIAGGVVGYLGSNWGVMLQALSSSTGSNILATPSIMTLDNQEAS 451 Query: 287 FTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 F G + + + ++ + GV L+ TP + + L I+ EVS Sbjct: 452 FLVGDEVPVLTGSTSSDDNDNPFQTIERKEIGVKLNVTPQINEGDSVQLVIEQEVSSIKD 511 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 N D+ + R TTV + SG TIV+ GL+ + + + + IPLL IP LG LF+++ Sbjct: 512 STNTVDV-VFSTRSVKTTVLVKSGQTIVIGGLIDEKVIESVDKIPLLGDIPWLGNLFKST 570 Query: 402 RFNREETEIFIAATPFLVK 420 R E+ + I +++ Sbjct: 571 RNTTEKRNLMIFLRATIIR 589 >gi|121533454|ref|ZP_01665282.1| type II and III secretion system protein [Thermosinus carboxydivorans Nor1] gi|121308013|gb|EAX48927.1| type II and III secretion system protein [Thermosinus carboxydivorans Nor1] Length = 414 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 83/407 (20%), Positives = 164/407 (40%), Gaps = 35/407 (8%) Query: 21 PSVAKLPPIKEA-NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P++A P + A + + ++SI + + ++ + ++++ + V Sbjct: 36 PALAAGPMVNMNVTDAEVRDVLTALASVGRVSIVADDSVTGKITIQLRNI-PFETALDLV 94 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 T Y G + A+ + + + + ++ +L I D ++V+ Sbjct: 95 TKTKGLTYYKTGNVIVVASADKLSKGFGSVQIIKLK-YARADEVKKSLALVIPDERLKVD 153 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 ++++V G + ++A+ L++ +QV+L+ Sbjct: 154 EATNSLVFSGSPAESEALRQALA------------------------ELDVP-YEQVSLE 188 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FS 255 + + R+ K +GF +G + + G D F+ Sbjct: 189 AQVVAINRNAAKDLGFDWQWSGLPANTEFDSTSGTTKTTREYPGVIKFGKAYDGTPYEFT 248 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYG 313 F+ L AL + + LA+P +T I+G+ A G + + G T+ + D G Sbjct: 249 FQAKLSALITSGEAKLLAKPKITTINGKEAKILIGDRIPVLVERTENGKTTTTIEYIDAG 308 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L +TP + + G I + TEVS P + V R+A T V + G T+V+ GL Sbjct: 309 IKLTYTPRINADGYITAAVHTEVSTPTL-VPEMKAYRVTTREATTNVRMKDGDTMVIGGL 367 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ K +PLLS +P+LG LF + + ETE+ I T +VK Sbjct: 368 ISNEESGGKNRVPLLSDLPVLGKLFESVHKTKNETEVVIFLTARIVK 414 >gi|153871180|ref|ZP_02000417.1| Bacterial type II and III secretion system protein [Beggiatoa sp. PS] gi|152072356|gb|EDN69585.1| Bacterial type II and III secretion system protein [Beggiatoa sp. PS] Length = 442 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 62/314 (19%), Positives = 114/314 (36%), Gaps = 35/314 (11%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G + + T + + V+ L+I QV ++ IAE+ Sbjct: 92 KGKSPSPEIKTNIQADESTNSLVITATPKVQQNLQTVIRQLDIR-RAQVLVEAVIAEIST 150 Query: 208 DILKQIGFQHSITGS----------------------SSGPSKSFAADFGGKFVSEGGDF 245 D +++G Q + G+ S+G + + + G Sbjct: 151 DTARELGVQWLLYGNKGTAPFGLSNFDNSGTRIADLASAGYLANNNSSTSLPNIGAGAFL 210 Query: 246 SVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302 + + F +F +L AL T L+ P+L + Q A G + T + Sbjct: 211 GLGRFNNSFLNFGVLLRALASDTNTNVLSTPSLLTLDNQEAEIVVGQNVPFVTGQYTNTG 270 Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 ++ D G+ L P + + L I+ EVS A Sbjct: 271 TSGGGGVTNPFQTIQREDIGIKLRVKPQINEGNAVKLEIEQEVSSLSRSSQATTDIVTNK 330 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R TTV + G +VL GL+ +D+QQ + +P L +PI+G LFR+ + + + + Sbjct: 331 RTIKTTVIVEDGNMVVLGGLIDEDLQQTAQKVPGLGDLPIIGHLFRSRSTQKIKRNLMVF 390 Query: 414 ATPFLVKPVAMRDL 427 P +++ A ++ Sbjct: 391 LHPVIIRDAASENI 404 >gi|331685028|ref|ZP_08385614.1| protein transport protein HofQ [Escherichia coli H299] gi|331077399|gb|EGI48611.1| protein transport protein HofQ [Escherichia coli H299] Length = 412 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 83/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + NI ++ + + + T N+ A S Sbjct: 106 AEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKAALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTALGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|218706981|ref|YP_002414500.1| outer membrane porin HofQ [Escherichia coli UMN026] gi|293406969|ref|ZP_06650893.1| hofQ [Escherichia coli FVEC1412] gi|298382711|ref|ZP_06992306.1| hofQ [Escherichia coli FVEC1302] gi|218434078|emb|CAR14995.1| fimbrial transporter [Escherichia coli UMN026] gi|291425780|gb|EFE98814.1| hofQ [Escherichia coli FVEC1412] gi|298276547|gb|EFI18065.1| hofQ [Escherichia coli FVEC1302] Length = 412 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 84/420 (20%), Positives = 158/420 (37%), Gaps = 19/420 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ ++ + V + Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVRGTVSL 60 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 + DV VV S L + G + + D + ++ Sbjct: 61 HLTDVPWKQA--LQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQEAEQAR 110 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 + + NI ++ + + + T N+ A S+ ++ Sbjct: 111 AQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKAALSALEQW 170 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + +++ QV L I + L+++G + ++ + G Sbjct: 171 VAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATAT 229 Query: 245 FSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 V G ++ + L ALE+ + +A P L A Q AS G + Y+ S Sbjct: 230 THVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGE 289 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTT 359 +GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ +T Sbjct: 290 SGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQ 349 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 350 VEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|94959236|gb|ABF47508.1| GspD [Leptospira biflexa serovar Patoc] Length = 595 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 84/438 (19%), Positives = 147/438 (33%), Gaps = 52/438 (11%) Query: 38 NISDVEIGKGKKIS--IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 +SD E+ K I+ + L +++ ++ V D ++ + T+ G Sbjct: 139 PVSDSEVALNKTITQIVPLEFSNAIELEPILKRVTSPDTDI--IIPKNQNTLIFSGSTAD 196 Query: 96 QANVILI--------GHDGKQMLNLDILIERDIAHLEMTLRRF-----IADSNIRVEMVS 142 ++ + G DI I + L + D+ + Sbjct: 197 INKLLKLVDNLDVRADGPGSISSAGDIHIYTLEYNEAEKLAAILVKLDMPDAPVAPTTQG 256 Query: 143 ---------------DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 V QD +AV E+ KK++ + Sbjct: 257 APGEAGADGKPAPPPQPTAQAPKVPGKQDKIKAVAHKESNSLIVTATPQEWEEIKKIIKI 316 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L+ QV L+V I E+ L G + G + A GG G +V Sbjct: 317 LD-TPRKQVLLEVLIVELSSTDLNDFGIDWRYQELAYGQFNTGLAAQGGVIDKNGRPTNV 375 Query: 248 KGVLD---------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + +L+A L+ P + + Q A G +T Sbjct: 376 NTLSGFSLGFIRRGGQQIIGILNANSTNENFNVLSAPQILTLDNQEAEINVGQDVPVRTQ 435 Query: 299 SSSTG--------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDM 348 + + G + G+ L FTP + RI L + E+ G Sbjct: 436 NRNAGLGGDNAVTVANFEYRPTGIKLKFTPHINKNNRITLDLYQEIKNVAGISSEATGGN 495 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P++ R TT+ + + TIV+ GLL +D Q+ + IP+L +IP+LG LFR + +T Sbjct: 496 PTFNKRDIKTTIVVDNIQTIVIGGLLSNDKQKKVQKIPILGEIPLLGTLFRRTTNQNRKT 555 Query: 409 EIFIAATPFLVKPVAMRD 426 + + TP ++ D Sbjct: 556 NLMVFLTPHILDDRDKSD 573 >gi|293412807|ref|ZP_06655475.1| conserved hypothetical protein [Escherichia coli B354] gi|291468454|gb|EFF10947.1| conserved hypothetical protein [Escherichia coli B354] Length = 412 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 80/425 (18%), Positives = 153/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGAQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +I ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRSITLKYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L++ V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|148827632|ref|YP_001292385.1| competence protein E [Haemophilus influenzae PittGG] gi|148718874|gb|ABR00002.1| competence protein E [Haemophilus influenzae PittGG] Length = 445 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKGGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKP 421 ++K Sbjct: 426 HILKA 430 >gi|331659679|ref|ZP_08360617.1| protein transport protein HofQ [Escherichia coli TA206] gi|331052894|gb|EGI24927.1| protein transport protein HofQ [Escherichia coli TA206] Length = 412 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 81/425 (19%), Positives = 156/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNVARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + + NI ++ + + + T N+ A S Sbjct: 106 VEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ ++ +++ QV L I + L+++G + ++ + G Sbjct: 166 TLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L++ V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|183221062|ref|YP_001839058.1| general secretory pathway protein D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911156|ref|YP_001962711.1| type II secretory pathway protein D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775832|gb|ABZ94133.1| Type II secretory pathway component, protein D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779484|gb|ABZ97782.1| General secretory pathway protein D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 587 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 84/438 (19%), Positives = 147/438 (33%), Gaps = 52/438 (11%) Query: 38 NISDVEIGKGKKIS--IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 +SD E+ K I+ + L +++ ++ V D ++ + T+ G Sbjct: 131 PVSDSEVALNKTITQIVPLEFSNAIELEPILKRVTSPDTDI--IIPKNQNTLIFSGSTAD 188 Query: 96 QANVILI--------GHDGKQMLNLDILIERDIAHLEMTLRRF-----IADSNIRVEMVS 142 ++ + G DI I + L + D+ + Sbjct: 189 INKLLKLVDNLDVRADGPGSISSAGDIHIYTLEYNEAEKLAAILVKLDMPDAPVAPTTQG 248 Query: 143 ---------------DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 V QD +AV E+ KK++ + Sbjct: 249 APGEAGADGKPAPPPQPTAQAPKVPGKQDKIKAVAHKESNSLIVTATPQEWEEIKKIIKI 308 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L+ QV L+V I E+ L G + G + A GG G +V Sbjct: 309 LD-TPRKQVLLEVLIVELSSTDLNDFGIDWRYQELAYGQFNTGLAAQGGVIDKNGRPTNV 367 Query: 248 KGVLD---------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + +L+A L+ P + + Q A G +T Sbjct: 368 NTLSGFSLGFIRRGGQQIIGILNANSTNENFNVLSAPQILTLDNQEAEINVGQDVPVRTQ 427 Query: 299 SSSTG--------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDM 348 + + G + G+ L FTP + RI L + E+ G Sbjct: 428 NRNAGLGGDNAVTVANFEYRPTGIKLKFTPHINKNNRITLDLYQEIKNVAGISSEATGGN 487 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P++ R TT+ + + TIV+ GLL +D Q+ + IP+L +IP+LG LFR + +T Sbjct: 488 PTFNKRDIKTTIVVDNIQTIVIGGLLSNDKQKKVQKIPILGEIPLLGTLFRRTTNQNRKT 547 Query: 409 EIFIAATPFLVKPVAMRD 426 + + TP ++ D Sbjct: 548 NLMVFLTPHILDDRDKSD 565 >gi|91200092|emb|CAJ73135.1| similar to general secretion pathway protein D [Candidatus Kuenenia stuttgartiensis] Length = 668 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 11/281 (3%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 R I +S + + +ET S K ++ ++ A QV ++V I EV R+ Sbjct: 374 RDIVESMKVLADTETNSVIMKTFPSDYKSIKAIIEAID-ATPQQVFIEVLIVEVTRNDTL 432 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 G + +GS+ + + SFE ++ L ++ + Sbjct: 433 DYGTEWLWSGSNLQVYGVGDI----ARAAGNAAVQFTNTFAKGSFEILIDILATSSNAKI 488 Query: 272 LAEPTLTAISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 L+ P + Q AS G + + ++ V D G++L TP + G Sbjct: 489 LSAPHILVRDEQPASIQVGEEVPILTSSGQQTGTTITFEQVQYRDTGIILTVTPHIAENG 548 Query: 327 RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + EVS + + P++ R+ T++ + SG TI L G+++ ++ + I Sbjct: 549 LITLEVNQEVSNAKLTDTGVEKSPTFSTRQVQTSLVIKSGHTIGLGGIIEQKNEKEVKKI 608 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 PLL IP LG LF+ + + TE+ + TP++ D Sbjct: 609 PLLGDIPYLGNLFKATSLIDKRTELIMLITPYIANNAEDAD 649 >gi|270264426|ref|ZP_06192692.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13] gi|270041562|gb|EFA14660.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13] Length = 414 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 82/378 (21%), Positives = 142/378 (37%), Gaps = 36/378 (9%) Query: 75 TKADVVVHSPRTMYLFGKNVG-QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 AD + + VG + L +Q L + + + + LE + + Sbjct: 42 ALADYQQLN----VVTATGVGGNLTLRLDNVSWQQALAVILRMGKLSMTLEGNVMMVFPE 97 Query: 134 SNIRVEMVSDTVVLHG-----MVRTIQDSQRAVELSETFLSQSGR--NQYANSSSKKVMN 186 + E + L V + AVE++E +Q ++ + + K N Sbjct: 98 PD-EQEKQRQQLALAQKQPLESVTLTLNHADAVEIAENLNAQGSILLSERGSVVADKRTN 156 Query: 187 LLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 L I QV L I + + L+++G + + Sbjct: 157 ALLIRDTAPIVALLTKRIAEMDAPLAQVQLAAHIVTINSESLRELGVRWGLAPDEGAAKP 216 Query: 229 SFAADFGGKFV---SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 DF S + + L ALE+ + +A P L Q+A Sbjct: 217 LRMGDFNVSLPLERSAVSAGFHLARIGGRLLDLELMALEQENRVEIIASPRLLTAHQQTA 276 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344 S G + Y+ S S+GATS+ + + + TP +L GRI L +Q + P ++ Sbjct: 277 SIKQGTEIPYEVKSGSSGATSMEFKEAVLGMEVTPKILPNGRITLTLQISQNMPGRSISR 336 Query: 345 -AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 G+ + ++ T V + G TIVL G+ + Q + +P L IP+LG+LF+ S Sbjct: 337 ADGEALAIDKQEIKTQVTVKDGETIVLGGVFQRQSAQGADKVPGLGDIPLLGSLFKQSTK 396 Query: 404 NREETEIFIAATPFLVKP 421 + E+ I TP L+K Sbjct: 397 QHKRRELVIFITPTLIKA 414 >gi|15803894|ref|NP_289930.1| outer membrane porin HofQ [Escherichia coli O157:H7 EDL933] gi|15833487|ref|NP_312260.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. Sakai] gi|168747135|ref|ZP_02772157.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113] gi|168753140|ref|ZP_02778147.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401] gi|168759412|ref|ZP_02784419.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501] gi|168765735|ref|ZP_02790742.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486] gi|168772721|ref|ZP_02797728.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196] gi|168779471|ref|ZP_02804478.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076] gi|168785192|ref|ZP_02810199.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869] gi|168797158|ref|ZP_02822165.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508] gi|208807105|ref|ZP_03249442.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206] gi|208814350|ref|ZP_03255679.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045] gi|208821093|ref|ZP_03261413.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042] gi|209400800|ref|YP_002272825.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115] gi|217324393|ref|ZP_03440477.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588] gi|254795305|ref|YP_003080142.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. TW14359] gi|261224673|ref|ZP_05938954.1| predicted fimbrial transporter [Escherichia coli O157:H7 str. FRIK2000] gi|261254432|ref|ZP_05946965.1| predicted fimbrial transporter [Escherichia coli O157:H7 str. FRIK966] gi|291284727|ref|YP_003501545.1| putative fimbrial transporter [Escherichia coli O55:H7 str. CB9615] gi|12518014|gb|AAG58491.1|AE005561_4 putative transport portein [Escherichia coli O157:H7 str. EDL933] gi|13363707|dbj|BAB37656.1| putative transport portein [Escherichia coli O157:H7 str. Sakai] gi|187771720|gb|EDU35564.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196] gi|188018292|gb|EDU56414.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113] gi|189002616|gb|EDU71602.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076] gi|189359008|gb|EDU77427.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401] gi|189364497|gb|EDU82916.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486] gi|189369829|gb|EDU88245.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501] gi|189374266|gb|EDU92682.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869] gi|189380180|gb|EDU98596.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508] gi|208726906|gb|EDZ76507.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206] gi|208735627|gb|EDZ84314.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045] gi|208741216|gb|EDZ88898.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042] gi|209162200|gb|ACI39633.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115] gi|209756640|gb|ACI76632.1| putative transport protein [Escherichia coli] gi|209756642|gb|ACI76633.1| putative transport protein [Escherichia coli] gi|209756644|gb|ACI76634.1| putative transport protein [Escherichia coli] gi|209756646|gb|ACI76635.1| putative transport protein [Escherichia coli] gi|217320614|gb|EEC29038.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588] gi|254594705|gb|ACT74066.1| predicted fimbrial transporter [Escherichia coli O157:H7 str. TW14359] gi|290764600|gb|ADD58561.1| predicted fimbrial transporter [Escherichia coli O55:H7 str. CB9615] gi|320639673|gb|EFX09267.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. G5101] gi|320655674|gb|EFX23597.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661459|gb|EFX28874.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. USDA 5905] gi|320666481|gb|EFX33464.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. LSU-61] Length = 412 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 83/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + NI ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|317049888|ref|YP_004117536.1| type IV pilus secretin PilQ [Pantoea sp. At-9b] gi|316951505|gb|ADU70980.1| type IV pilus secretin PilQ [Pantoea sp. At-9b] Length = 418 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 127/309 (41%), Gaps = 30/309 (9%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 L+ ++ V+ +++++L R +Q++ R Sbjct: 131 ARSLQAERSLMTPRGSVTVDSRTNSLLLRDTPRALQETVR-------------------- 170 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 +N L++ +QV L I + + L+++G ++ + Sbjct: 171 ----WLNALDLPL-EQVELSAHIVTISEEHLRELGVNWGLSPAEEVMQTLRNPQLAIPLA 225 Query: 240 SEGGDF---SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 F G + L ALE+ + I +A P L Q+A+ G + Y+ Sbjct: 226 VSNPAFRMGVTLGHIGGDLLNLELSALEQESQIDIIASPRLFTSHQQTATIKQGTEIPYE 285 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVR 354 S ++GAT++ + + + TP VL GRI L+++ + P +N G S + Sbjct: 286 VKSGNSGATAIEFKEAVLGMEVTPVVLGNGRIQLKLRLSQNMPGRSINTGEHQTLSIDKQ 345 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + DT V L G T+ L G+ + Q + +P L K+P++G LFR+ ++ E+ I Sbjct: 346 EIDTQVTLRDGETLALGGIFQQQRAQNENRVPWLGKLPVVGNLFRHQTDEHKKKELVIFI 405 Query: 415 TPFLVKPVA 423 TP LV+ A Sbjct: 406 TPRLVREAA 414 >gi|297537658|ref|YP_003673427.1| type II and III secretion system protein [Methylotenera sp. 301] gi|297257005|gb|ADI28850.1| type II and III secretion system protein [Methylotenera sp. 301] Length = 838 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 76/479 (15%), Positives = 155/479 (32%), Gaps = 81/479 (16%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P + A + + + + I++ L++ + + + V D + D Sbjct: 198 PISLQFRDANLKMVFEALSRTSGINVLLDRDVKNDLK---TTIFVKDASVEDTIGLILMQ 254 Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 V + T++++ + + ++ L+ D ++ ++ + Sbjct: 255 NQLEEKVLNENTVFIYPSTPAKIK-----EYQELVIRTFHLVNADAKQMQTMIKTMLKTK 309 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 +I + ++++V+ AV+L+E ++ N Sbjct: 310 DIFIHEKTNSLVMRDTP-------EAVQLAEKLVAAQDLNDPE----------------- 345 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------- 241 V L+V + EV + +IG Q S Sbjct: 346 -VMLEVEVLEVLHSKMTEIGVQWPTQFGLSVTDAPSTPTTTVGLGGAIQTTTPPPVPLTL 404 Query: 242 -GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + +L + LA P + + A G + T S Sbjct: 405 EGLRNITGSNIKVTPLSLLLTMKKDVGDTNLLASPRIRVRQHEKAKIMIGDRVPVITNSV 464 Query: 301 STGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MP 349 + +T SV D G+ L P + G + ++ EVS V Sbjct: 465 TPVSTGTPVVTGSVQYLDVGLKLEVEPDIHIDGEVAIKTYLEVSNIANQVTNATSGTIAY 524 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R A T + L G T VL GL+ D+ ++ +P L +PILG LF + ++ +TE Sbjct: 525 QIGTRNASTVLRLKDGETQVLGGLISDEDRKSASKVPGLGDLPILGRLFSSHNNSKTKTE 584 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 I + TP +++ + + D F+ ++ + + G G+ Sbjct: 585 IILFITPHIIRNI-----------HQPAADLSEFWSGTDATLHSKPMSLQPVGVAKTGS 632 >gi|302392509|ref|YP_003828329.1| type II and III secretion system protein [Acetohalobium arabaticum DSM 5501] gi|302204586|gb|ADL13264.1| type II and III secretion system protein [Acetohalobium arabaticum DSM 5501] Length = 428 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 9/229 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV ++ I +V D LK +G S + + + GG ++ Sbjct: 181 KQVIIEARIEDVSYDKLKDLGINWSF---AKNRGDNKGEQISDTDIENGGSGILEIGDVS 237 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---SSSTGATSVTTH 310 ++ ++ AL+ TLA P + I G+ A G + +T+++ Sbjct: 238 MNYTAIIRALKSTDDSTTLANPRIATIDGKEAVINMGQEVPILKSEKDDDGQTSTNISFR 297 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 D G VL TP ++ +I + I+ EVSE G P +K +T + + +G TIV+ Sbjct: 298 DVGTVLKITPR-INNNQIRMNIKPEVSEVDHWE--GSYPVINTKKVETNIIVKNGETIVI 354 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GL+ + +PL +PI G LF++ R +E+ E+ I TP ++ Sbjct: 355 GGLISEKEINQLSKVPLFGDVPIFGELFKSRRTTKEKRELVIFITPRII 403 >gi|114571311|ref|YP_757991.1| general secretion pathway protein D [Maricaulis maris MCS10] gi|114341773|gb|ABI67053.1| general secretion pathway protein D [Maricaulis maris MCS10] Length = 686 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 66/334 (19%), Positives = 126/334 (37%), Gaps = 20/334 (5%) Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTVVLHGMVRTIQD 156 ++ L ++ + L + A I D HG + Sbjct: 326 SAGSERRLRYYVVRNTPASTLATQITAAFAGGQTGAGQLIEPRFQGDDA--HGEPSAPGE 383 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 Q + + L+ + + + +++ + +++ QV ++ TIAEVR + Sbjct: 384 EQSRLTIIPDELNNALIIRATDQEYREILDLVQRMDV-MPPQVLIEATIAEVRLEDGLDF 442 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G + + S + S + L AL T + L+ Sbjct: 443 GVRWYFENAGSNETSSLQFSDSNTGSTAPVFPGFNYAFSGTDLTATLSALRSITDVTVLS 502 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPG 326 P++ + Q+A G + T ++++ S V + GV+L TP + + G Sbjct: 503 APSIMVQNNQTAHLQVGDEVPIVTQTATSVTESNAPIVSSVELRETGVILQVTPRINASG 562 Query: 327 RIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L + EVS + D P+ + + +TV + S TI L GL+++ + Sbjct: 563 MVVLEVNQEVSSVRPTTTSGIDSPTIQKLEFTSTVSVRSSNTIALGGLIRETTSDNESRT 622 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 PLL IP +G LFRN + +E+ I TP ++ Sbjct: 623 PLLGDIPGVGNLFRNRAMTSQRSELVIFLTPRII 656 >gi|260886221|ref|ZP_05897484.1| putative secretin and TonB short domain protein [Selenomonas sputigena ATCC 35185] gi|260863940|gb|EEX78440.1| putative secretin and TonB short domain protein [Selenomonas sputigena ATCC 35185] Length = 462 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 78/438 (17%), Positives = 174/438 (39%), Gaps = 23/438 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 + F+ A P E A + I + + + L+ + ++ Sbjct: 18 ISPRVGAFFLAAWFAGALPAAASPLTLEVVDADVTALLTSIARLSGLDLILDDSVKGRIS 77 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI--LIERDIA 121 + ++DV +P +A +++ + + + ++ G+ ++ + + + + D+ Sbjct: 78 LSLKDV---EPEEALMLISRAKGLAV--QHEGKVLLVRAAKEAAPFYRMHVLPVHHADLD 132 Query: 122 HLEMTLRRFIADSNIRV---EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 ++ + ++ I + + + ++ + L G + Sbjct: 133 TAFAAVKLSLGEAGISAIDENKKNGKEDISEQGLYRTGERLLIDRATNALLFYGTEEE-K 191 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++ V++ L++ +QV+L+ + + ++ K++G + P + + G Sbjct: 192 ARAEAVLHSLDVPT-EQVSLEARVVALEKNAAKELGVDWDWSPLPIDPHGTSKSGAEGSR 250 Query: 239 VSEGGDFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G+ R + + AL LA P +T + G+ A G Sbjct: 251 RGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLARPNITTLQGREAVINIG 310 Query: 291 GQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 G ++ + + G++L +TP + G I R+ TEVS PV V+A Sbjct: 311 GSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARVHTEVSSPVY-VDALKA 369 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ R ADTTV L G T+V+ GL+ + ++ +PLL IPILG F++ R + ++ Sbjct: 370 YKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIPILGTFFKSVRRTKTDS 429 Query: 409 EIFIAATPFLVKPVAMRD 426 EI I T +++ + Sbjct: 430 EIMIFLTAHILRDTSPPA 447 >gi|26249985|ref|NP_756025.1| outer membrane porin HofQ [Escherichia coli CFT073] gi|227883521|ref|ZP_04001326.1| competence protein E [Escherichia coli 83972] gi|26110414|gb|AAN82599.1|AE016768_17 Protein transport protein hofQ precursor [Escherichia coli CFT073] gi|227839400|gb|EEJ49866.1| competence protein E [Escherichia coli 83972] Length = 412 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 82/425 (19%), Positives = 155/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + NI ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ ++ +++ QV L I + L+++G + ++ + G Sbjct: 166 TLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|218702134|ref|YP_002409763.1| outer membrane porin HofQ [Escherichia coli IAI39] gi|331664993|ref|ZP_08365894.1| protein transport protein HofQ [Escherichia coli TA143] gi|218372120|emb|CAR19982.1| fimbrial transporter [Escherichia coli IAI39] gi|331057503|gb|EGI29489.1| protein transport protein HofQ [Escherichia coli TA143] Length = 412 Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 82/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + NI ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L++ V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|293390985|ref|ZP_06635319.1| protein transport protein HofQ [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951519|gb|EFE01638.1| protein transport protein HofQ [Aggregatibacter actinomycetemcomitans D7S-1] Length = 469 Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I +F Sbjct: 194 EQIAIEARIVTINDESLKELGVRWGIFNPTENAHRIGGSLAGNGFDNLVNQLNVNFPTTT 253 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y V Sbjct: 254 TPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTELPYILV 313 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKA 356 + +G+ SV + + L TP + +I L + + P V G ++ S ++ Sbjct: 314 NEKSGSQSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGSRVAYGLGEVVSIDKQEI 373 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + + +P+L IP + LF ++ E+ I TP Sbjct: 374 NTQVFAKDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFSKESERHQKRELVIFVTP 433 Query: 417 FLVK 420 +++ Sbjct: 434 HILR 437 >gi|119943890|ref|YP_941570.1| general secretion pathway protein D [Psychromonas ingrahamii 37] gi|119862494|gb|ABM01971.1| general secretion pathway protein D [Psychromonas ingrahamii 37] Length = 662 Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 117/287 (40%), Gaps = 16/287 (5%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G + Q T SS ++ L+I QV ++ I EV Sbjct: 309 AGQSGSAQGGLSIEAHEGTNAIVVSAQPALMSSLTSIIRQLDIR-RAQVLVEAIIVEVSE 367 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------RFSFET 258 + Q T + S ++ D ++ + + ++ Sbjct: 368 GDGINLNVQWGTTNGGTQFQDSAVTTGNIVAGTQDNDAAISAIGNISGGIAGYIGSNWGV 427 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYG 313 VL AL AT LA P+LT + Q ASF G + + ++ ++ + G Sbjct: 428 VLQALSSATTSNILATPSLTTLDNQEASFIVGDEVPVLTGSTSSATNDNPFQTIERKEIG 487 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L TP + + + I+ EVS+ +A D+ + R TTV SG TIV+ GL Sbjct: 488 IKLKVTPQINEGDSVQMIIEQEVSDIKNDTSAVDV-IFSTRSVKTTVLAKSGETIVIGGL 546 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +++ + +PLL IP+LG LFR+++ + E+ + I +++ Sbjct: 547 IDETVKETVQKVPLLGDIPLLGFLFRSTQSSTEKRNLMIFLRATIIR 593 >gi|30065325|ref|NP_839496.1| outer membrane porin HofQ [Shigella flexneri 2a str. 2457T] gi|56480325|ref|NP_709164.2| outer membrane porin HofQ [Shigella flexneri 2a str. 301] gi|30043587|gb|AAP19307.1| putative transport portein [Shigella flexneri 2a str. 2457T] gi|56383876|gb|AAN44871.2| putative transport portein [Shigella flexneri 2a str. 301] gi|281602739|gb|ADA75723.1| putative transport protein [Shigella flexneri 2002017] gi|313647313|gb|EFS11765.1| transport protein hofQ [Shigella flexneri 2a str. 2457T] gi|332749511|gb|EGJ79928.1| transport protein hofQ [Shigella flexneri K-671] Length = 412 Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 80/425 (18%), Positives = 153/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +I ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L++ V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|157146468|ref|YP_001453787.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895] gi|157083673|gb|ABV13351.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895] Length = 640 Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 60/297 (20%), Positives = 114/297 (38%), Gaps = 20/297 (6%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 ++ + ++ + N +S +KV++ L+I QV ++ IAEV+ Sbjct: 299 KSPVAATDLNITADESTNSLVITAQPNVMNSLEKVIDKLDIRRP-QVLVEAIIAEVQDGA 357 Query: 210 LKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 +G Q + G G + + + F ++ AL Sbjct: 358 GTDLGVQWTSKHGGVQFGATGLPIGQVKNGTIKGVNFTGMATGFFNGDFGALMTALSTNG 417 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVL 323 L+ P++ + + ASF G + S +T +V G L P + Sbjct: 418 KNDILSTPSVVTLDNKEASFNVGQDVPVLSGSQTTTGDNVFNTVERKTVGTKLKILPQIN 477 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 I ++I+ EVS P++ R + V + SG T+VL GL+++ +Q Sbjct: 478 DGDMIHMKIEQEVSSVDASSTEDSSLGPTFNTRTINNEVMVHSGQTVVLGGLIENVTKQN 537 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 +PLL IP++G LFR + + + + + +++ DD+YS Sbjct: 538 VSKVPLLGDIPLVGQLFRYTSQDTTKRNLMVFIHTTVLRD---------DDNYSAAS 585 >gi|110643624|ref|YP_671354.1| outer membrane porin HofQ [Escherichia coli 536] gi|191171563|ref|ZP_03033111.1| protein transporter HofQ [Escherichia coli F11] gi|215488672|ref|YP_002331103.1| outer membrane porin HofQ [Escherichia coli O127:H6 str. E2348/69] gi|331649187|ref|ZP_08350273.1| protein transport protein HofQ [Escherichia coli M605] gi|110345216|gb|ABG71453.1| protein transport protein HofQ precursor [Escherichia coli 536] gi|190908190|gb|EDV67781.1| protein transporter HofQ [Escherichia coli F11] gi|215266744|emb|CAS11183.1| predicted fimbrial transporter [Escherichia coli O127:H6 str. E2348/69] gi|281180422|dbj|BAI56752.1| putative transport protein [Escherichia coli SE15] gi|331041685|gb|EGI13829.1| protein transport protein HofQ [Escherichia coli M605] Length = 412 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 81/425 (19%), Positives = 155/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + NI ++ + + + T N+ A S Sbjct: 106 AEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ ++ +++ QV L I + L+++G + ++ + G Sbjct: 166 TLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L++ V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|205360346|ref|ZP_02682767.2| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350396|gb|EDZ37027.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 389 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 Q + +D L + + + +I ++ + + + + Sbjct: 69 HSQAWQKEYSARQDAERLRLQANLPLENRSINLQYADAGELAKAGEKLLSAKGTIMVDKR 128 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A + +K ++ +++ QV L I + L+++G + ++ ++ Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S V G ++ + L ALE+ + +A P L A Sbjct: 188 GSVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 368 DGKEDERRELVVFITPRLV 386 >gi|1170050|sp|P31780|GSPD_AERHY RecName: Full=General secretion pathway protein D; Flags: Precursor gi|551421|emb|CAA47124.1| ExeD [Aeromonas hydrophila] Length = 678 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 106/275 (38%), Gaps = 24/275 (8%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + ++V+ L+I QV ++ I E+ +G Q + T + Sbjct: 331 TAQPDVMAELEQVVAKLDIR-RAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTNAG 389 Query: 232 ADFGGKFVSEG----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 G ++ + + ++ ++ AL T L+ P Sbjct: 390 PGIGSVAIAAKDYKDNGTTTGLAKLAENFNGMAAGFYQGNWAMLVTALSTNTKSDILSTP 449 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ + + ASF G + +T + + T +++ G L TP + + L Sbjct: 450 SIVTMDNKEASFNVGQEVPVQTGTQNSTSGDTTFSTIERKTVGTKLVVTPQINEGDSVLL 509 Query: 331 RIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 I+ EVS D P++ R V + SG T+VL GL+ + ++ +PLL Sbjct: 510 TIEQEVSSVGKQATGTDGLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEEVSKVPLL 569 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 IP+LG LFR++ N + + + P +++ Sbjct: 570 GDIPVLGYLFRSTSNNTSKRNLMVFIRPTILRDAN 604 >gi|296103142|ref|YP_003613288.1| general secretion pathway protein D [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057601|gb|ADF62339.1| general secretion pathway protein D [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 642 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 101/247 (40%), Gaps = 9/247 (3%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFV 239 +KV++ L+I QV ++ IAEV+ +G Q + G G + + + Sbjct: 331 EKVIDKLDIRRP-QVLVEAIIAEVQDGNGMDLGVQWTGKHGGVQFGSTGLPISQVKNGTI 389 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + + +L AL + L+ P++ + + ASF G + S Sbjct: 390 KGASFTGLATGFFNGDYGALLTALSTSGKNDILSTPSVVTLDNKEASFNVGQDVPVLSGS 449 Query: 300 SS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353 + SV G L P + I L+I+ EVS P++ Sbjct: 450 QTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASATEDASLGPTFNT 509 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R + V + SG T+VL GL+++ +Q +PLL +P++G LFR + + + + + Sbjct: 510 RTINNEVMVHSGQTVVLGGLMENVSKQNVSKVPLLGDLPLVGQLFRYTSEDTSKRNLMVF 569 Query: 414 ATPFLVK 420 +++ Sbjct: 570 IHTTVLR 576 >gi|157148976|ref|YP_001456295.1| outer membrane porin HofQ [Citrobacter koseri ATCC BAA-895] gi|157086181|gb|ABV15859.1| hypothetical protein CKO_04814 [Citrobacter koseri ATCC BAA-895] Length = 412 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 83/423 (19%), Positives = 163/423 (38%), Gaps = 25/423 (5%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++ L + P+ + K N ++ + + ++ K +++ P Sbjct: 1 MKRWIAAALIAVMPA---VQAGKAQNVTLVVDDVPVVQVLQALAAQEKKNLVV-SPDVSG 56 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH----L 123 + +S + + K+ G +++ +G + + + + A Sbjct: 57 SLSLSLTDV-----PWKQAVQTVIKSAG----LVLRQEGNILHVHSVHWQNENAARQEAE 107 Query: 124 EMTLRRFIADSN--IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + LR + + I ++ + + + + T N A ++ Sbjct: 108 QARLRANLPLEDRSISLQYADASELAKAGEKLLSAKGSMTVDKRTNRLLLRDNNAALAAL 167 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +++ +QV L I + L+++G + ++ + S Sbjct: 168 ETWAAQMDLP-VEQVELAAHIVTINEKSLRELGVKWTLADAQLAGSPGQVTSLASDLSVA 226 Query: 242 GGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 227 AATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVS 286 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKA 356 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + ++ Sbjct: 287 SGESGATSVEFKEAVLGMEVTPTVLPKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEI 346 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT VE+ SG T+ L G+ + K+ +PLL IP LG+LF + E E+ + TP Sbjct: 347 DTQVEVKSGETLALGGIFSRKNKSAKDSVPLLGDIPWLGSLFSHDGKENERRELVVFITP 406 Query: 417 FLV 419 LV Sbjct: 407 RLV 409 >gi|307131917|ref|YP_003883933.1| general secretion pathway protein D [Dickeya dadantii 3937] gi|399825|sp|Q01565|GSPD2_DICD3 RecName: Full=General secretion pathway protein D; AltName: Full=Pectic enzymes secretion protein outD; Flags: Precursor gi|581156|emb|CAA46370.1| outD [Erwinia chrysanthemi] gi|306529446|gb|ADM99376.1| General secretion pathway protein D [Dickeya dadantii 3937] Length = 710 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 59/306 (19%), Positives = 115/306 (37%), Gaps = 31/306 (10%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 T+ + G T++ + L T R+ ++V+N L+I QV + Sbjct: 350 SSGGRTITIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 402 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------- 241 + IAE++ +G Q + + + + Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAVIGTDQFRSNGTLTTAYASAL 462 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 V R ++ +L AL + LA P++ + A+F G + T S + Sbjct: 463 SSFNGVTAGFYRGNWSMLLTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522 Query: 302 TG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354 T +V G+ L P + + L+I+ EVS ++ + ++ R Sbjct: 523 TSADNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSTNSSLGVTFNTR 582 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + V + +G T+V+ GLL + + +PLL IP LG+LFR+ + + + Sbjct: 583 TVNNAVMVTNGETVVVGGLLDKTSVESNDKVPLLGDIPWLGSLFRSKSQEVRKRNLMLFL 642 Query: 415 TPFLVK 420 P +++ Sbjct: 643 RPTIIR 648 >gi|261867159|ref|YP_003255081.1| protein transport protein HofQ [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412491|gb|ACX81862.1| protein transport protein HofQ [Aggregatibacter actinomycetemcomitans D11S-1] Length = 469 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 77/418 (18%), Positives = 152/418 (36%), Gaps = 35/418 (8%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P V L + A+ + I D E+ + + + + + V + Sbjct: 38 APLVPTLQQLALAHNTNL-IIDDELQGTVSLQLE-----NVDLDQLFRSVA----KIKQL 87 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 + +Y F K G N G + + E T++ A ++ ++ Sbjct: 88 DLWQENGIYYFTK--GDTNTKFAGKMEEPFPLSLPMAEEPAQLTTATIKLHFAKASEVMK 145 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 ++ G + + S + + L + + KK++ L+ +Q+ ++ Sbjct: 146 SLTGG---SGSLLSPNGSITFDD--RSNLLLIQDEPRSVRNIKKLIKELDKPI-EQIAIE 199 Query: 200 VTIAEVRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGKFVSEGGD 244 I + + LK++G + I +F G Sbjct: 200 ARIVTINDESLKELGVRWGIFSPTDNAHRIGGSLAGNGFDNLVNQLNVNFPTTTTPAGSV 259 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ + L ALER + +A P L + +SAS G + Y V+ +G+ Sbjct: 260 ALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTELPYILVNEKSGS 319 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVEL 362 SV + + L TP + +I L + + P V G++ S ++ +T V Sbjct: 320 QSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGSRVAYGLGEVVSIDKQEINTQVFA 379 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G TIVL G+ D I + + +P+L IP + LF ++ E+ I TP +++ Sbjct: 380 KDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFSKESERHQKRELVIFVTPHILR 437 >gi|331654967|ref|ZP_08355966.1| protein transport protein HofQ [Escherichia coli M718] gi|331046982|gb|EGI19060.1| protein transport protein HofQ [Escherichia coli M718] Length = 412 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 82/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + +V S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTIVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + NI ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|194431292|ref|ZP_03063585.1| protein transporter HofQ [Shigella dysenteriae 1012] gi|194420747|gb|EDX36823.1| protein transporter HofQ [Shigella dysenteriae 1012] Length = 412 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 82/425 (19%), Positives = 155/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + + + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +I ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+VL G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|330957039|gb|EGH57299.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. maculicola str. ES4326] Length = 692 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 63/343 (18%), Positives = 134/343 (39%), Gaps = 21/343 (6%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 402 TSAESKADERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF------------SVKGVLDRFS 255 D K++G + ++SG S G + F + + + Sbjct: 461 DYDKELGVRWGGATNTSGSSNWSTGTAAGGSTANSSTFVDMGAANATSGIGLGFLTNNTM 520 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + L A+E+ +++P + ++A G + Y+ SS+GAT+V+ + + Sbjct: 521 LDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEVPYQES-SSSGATTVSFKEASLS 579 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + RI + ++ EP +P + + + V + G TIV+ G+ Sbjct: 580 LEVTPQITPDNRIIMEVKVTKDEPDYVNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFS 639 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + + +P L +P LG LFR + ++E+ + TP + Sbjct: 640 NTQSKSVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 682 >gi|323966201|gb|EGB61637.1| type IV pilus secretin PilQ [Escherichia coli M863] Length = 412 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 82/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +I ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKAALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|28870471|ref|NP_793090.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato str. DC3000] gi|28853718|gb|AAO56785.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato str. DC3000] Length = 763 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 101/261 (38%), Gaps = 19/261 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244 QV ++ I EV+ +G Q S T + + G + Sbjct: 489 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 548 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298 S + + L ALE + L+ P+L ++ Q A G Sbjct: 549 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 608 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355 +++T +SV GV+L P + G + + IQ +VS+ G + P R Sbjct: 609 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 668 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V SG T++L GL+K D + +P L +IP L LF NS +++ TE+ + T Sbjct: 669 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 728 Query: 416 PFLVKPVAMRDLSRPDDHYSV 436 P ++ + + D Y Sbjct: 729 PRVI--TSSSQARQVTDDYRQ 747 >gi|209920843|ref|YP_002294927.1| outer membrane porin HofQ [Escherichia coli SE11] gi|218697071|ref|YP_002404738.1| outer membrane porin HofQ [Escherichia coli 55989] gi|331670209|ref|ZP_08371048.1| protein transport protein HofQ [Escherichia coli TA271] gi|331679451|ref|ZP_08380121.1| protein transport protein HofQ [Escherichia coli H591] gi|209914102|dbj|BAG79176.1| putative transport protein [Escherichia coli SE11] gi|218353803|emb|CAV00141.1| fimbrial transporter [Escherichia coli 55989] gi|323944387|gb|EGB40462.1| type IV pilus secretin PilQ [Escherichia coli H120] gi|324116416|gb|EGC10335.1| type IV pilus secretin PilQ [Escherichia coli E1167] gi|331062271|gb|EGI34191.1| protein transport protein HofQ [Escherichia coli TA271] gi|331072623|gb|EGI43948.1| protein transport protein HofQ [Escherichia coli H591] Length = 412 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 82/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +I ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|94500719|ref|ZP_01307248.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65] gi|94427041|gb|EAT12022.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65] Length = 640 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 84/454 (18%), Positives = 161/454 (35%), Gaps = 49/454 (10%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV-DVQDVL 70 + L L +K ANA ++ + + +KI L+ + ++ V +++ Sbjct: 149 LVPILRPMVAKYGHLAGVKSANALIVTDHASNVRRLEKIIQRLDGSGVSELEVVQLEEAW 208 Query: 71 VSDPTKADVVV-HSPRTMYLFGKN------VGQANVILIGHDGKQMLNLDILIERDIAHL 123 V D D++ P + GK G+ V+ + ++ + + L Sbjct: 209 VGD--IVDILTNLDPDKVSEGGKAREASGVAGRIRVVADERANRLIIQGEQSARERVKEL 266 Query: 124 EMTLRRFIADSN----IRVEMVSDTVV------LHGMVRTIQDSQRAVELSETFLSQSGR 173 TL R S IR++ + L G V+ + +A Sbjct: 267 IATLDRPSKFSGKASVIRLQHADSEELAELLKNLMGDVKDDKGKSQAGGSVSIHADTGLN 326 Query: 174 NQYANSSSK------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + +++ L++ QV ++ I EV + ++G Q + +G + Sbjct: 327 ALVVRAEPSVMSEIKEIVTELDVR-RAQVLIEAAIVEVTGQVDDRVGVQTAALDQETGET 385 Query: 228 KSFAADFGGKFVS----------------EGGDFSVKGVLDRFSFETVLHALERATAIRT 271 A DF S G G F ++ ALE + Sbjct: 386 PLVATDFANAGTSISQLITGIATGQPAISSGLTLGGVGQNGDTEFAFLVQALESVSNANL 445 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-----GATSVTTHDYGVVLHFTPTVLSPG 326 L+ P++ + A G + T S+S+ T++ D G L TP V Sbjct: 446 LSTPSIMTMDNHEAEIIVGQNVPFVTGSTSSTSNSNPFTTIKREDIGTTLKVTPHVQDGK 505 Query: 327 RIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L ++ V R T + +G ++L GL++D +Q+ + + Sbjct: 506 FVRLSVEQSTESVAPTAVEGQADLITNKRSIQTQILAENGEIVMLGGLIRDAVQESESKV 565 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P L IPI+G LFR++ +R + + + P +V Sbjct: 566 PFLGDIPIIGWLFRSTSESRVKQNLIVFLKPTVV 599 >gi|200387767|ref|ZP_03214379.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604865|gb|EDZ03410.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 389 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 Q + +D L + + + +I ++ + + + + Sbjct: 69 HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKR 128 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A + +K ++ +++ QV L I + L+++G + ++ ++ Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S V G ++ + L ALE+ + +A P L A Sbjct: 188 GSVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 368 DGKEDERRELVVFITPRLV 386 >gi|251793894|ref|YP_003008626.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700] gi|247535293|gb|ACS98539.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700] Length = 474 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 70/414 (16%), Positives = 152/414 (36%), Gaps = 38/414 (9%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVII---------LQVPVDVQDVLVSDPTKADVVVHS 83 A + + ++ + +++ ++ + + + + V + + Sbjct: 40 KQAPLVPTLQQLALAQNVNLIIDDELQGTVSLQLENVDLDQLFRSVA----KIKQLDLWQ 95 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 +Y K + + + ++ E T++ A ++ ++ ++ Sbjct: 96 ENGIYYLSKL--DTSAKFATKMDEPFILPAVMTEEPTRLTTATIKLHFAKASEVMKSLTG 153 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 G + + S + S L Q AN KK++ L+ +Q+ ++ I Sbjct: 154 G---SGSLLSPNGSLTFDDRSNLLLIQDEPKSIANL--KKLIKELDKPI-EQIAIEARIV 207 Query: 204 EVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGKFVSEGGDFSVK 248 + + LK++G + + + +F G Sbjct: 208 TMNGESLKELGVRWGMFNPTENAHRIGGSLAGNGFDNITNQLNVNFPTATTPAGSVALQV 267 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 ++ + L ALER + +A P L + ++AS G + Y V+ +G+ SV Sbjct: 268 AKINGRLLDLELTALERENNVEIIASPRLLTTNKKAASIKQGTELPYILVNEKSGSQSVE 327 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGG 366 + + L TP + +I L + + P V G++ S ++ +T V G Sbjct: 328 FREAVLGLEVTPHISQDKQILLDLVVSQNAPGSRVAHGLGEVVSIDKQEINTQVFAKDGE 387 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 TIVL G+ D I + + +PLL IP + LF ++ E+ I TP +++ Sbjct: 388 TIVLGGVFHDTITKNVDKVPLLGDIPGVKHLFSKESERHQKRELVIFVTPHILR 441 >gi|170681657|ref|YP_001745634.1| outer membrane porin HofQ [Escherichia coli SMS-3-5] gi|170519375|gb|ACB17553.1| protein transporter HofQ [Escherichia coli SMS-3-5] Length = 412 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 83/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + NI ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|308188407|ref|YP_003932538.1| Type IV pilus biogenesis and competence protein pilQ precursor [Pantoea vagans C9-1] gi|308058917|gb|ADO11089.1| Type IV pilus biogenesis and competence protein pilQ precursor [Pantoea vagans C9-1] Length = 423 Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats. Identities = 63/323 (19%), Positives = 123/323 (38%), Gaps = 31/323 (9%) Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 +L E + L ++ V+ ++ ++L Sbjct: 122 AVILRYASASEVHASLLTERQSLMTPRGSVTVDKRTNALLLRDTA--------------- 166 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 A +++ + L++ +Q+ L I + + L+++G + + + Sbjct: 167 ---------AALKETERWIRALDLPL-EQIELSAHIVTISEEHLQELGVKWGLQAGDAAV 216 Query: 227 SKSF----AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + + + L ALE+ I +A P L Sbjct: 217 TDILHHPRLDIPLALSSPGISVGMALARIGGQLLDLELSALEQENQIEIIASPRLFTSHQ 276 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340 Q+AS G + Y+ + ++GATS+ + + + TPT+ GRI L+I + P Sbjct: 277 QTASIKQGTEIPYEVSAGNSGATSIEFKEAVLGMEVTPTISGNGRIQLKIHISQNMPGRS 336 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 I D+ S ++ +T V + G T+ L G+ + + +PLL +P++G LFR Sbjct: 337 IRTGDSDILSIDKQEIETQVTVSDGQTLALGGIFQQQRSHGENKVPLLGNVPLIGGLFRQ 396 Query: 401 SRFNREETEIFIAATPFLVKPVA 423 R++ E+ I TP LV+ A Sbjct: 397 QSEQRKKRELVIFITPRLVREAA 419 >gi|238754545|ref|ZP_04615899.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473] gi|238707176|gb|EEP99539.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473] Length = 674 Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 13/254 (5%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----KSFAADFGG 236 +KV+ L+I QV ++ I E + +G Q G + G Sbjct: 359 EKVIEKLDIR-RAQVLVEAIIVEAQDGEGINLGIQWDTKQKKVGGFISYNKSNLGNIQNG 417 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G + R ++ + AL ++ LA P++ + A F+ G + Sbjct: 418 VTSIANGISGLTTGFYRGNWSGLFTALATNSSNEILATPSIVTLDNMDAEFSVGQEVPVL 477 Query: 297 TVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MP 349 + +T +++ G++L P + + L I+ EVS N Sbjct: 478 SSQQTTSTDKVYNTISRQSVGIMLKVKPQINKGDSVLLEIRQEVSSVAENSNVDKDNIGS 537 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R + V + SG T+V+ GLL + + IPLL IPI+G LFR + E+ Sbjct: 538 TFNKRVVNNAVLVKSGETVVVGGLLDKKVSNVINKIPLLGDIPIIGNLFRQKKEKIEKRN 597 Query: 410 IFIAATPFLVKPVA 423 + + P +++ Sbjct: 598 LILFIKPTIIRESD 611 >gi|204928849|ref|ZP_03220048.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322282|gb|EDZ07480.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 389 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 77/376 (20%), Positives = 147/376 (39%), Gaps = 17/376 (4%) Query: 53 GLNKVIILQVPVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++ ++ P + + A V + + L + G + + Q Sbjct: 19 EQDRQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQ 71 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D L + + + +I ++ + + + + T Sbjct: 72 AWQKEHSARQDAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNR 131 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ S Sbjct: 132 LLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSV 190 Query: 229 SFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 V G ++ + L ALE+ + +A P L A Q A Sbjct: 191 GDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPA 250 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGV 343 S G + Y+ S +GATSV + + + TPTVL GRI L+ I V ++ Sbjct: 251 SIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQILQQ 310 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ Sbjct: 311 ADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGK 370 Query: 404 NREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 371 EDERRELVVFITPRLV 386 >gi|56476309|ref|YP_157898.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum aromaticum EbN1] gi|56312352|emb|CAI06997.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum aromaticum EbN1] Length = 769 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 70/352 (19%), Positives = 129/352 (36%), Gaps = 17/352 (4%) Query: 86 TMYLFGKNVGQAN-----VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140 +Y++ G A + + G+ L R + S + + Sbjct: 366 QLYVYPVQNGSAQHLGSLLSAVFGGGQAGAARTPTDSGVAPGLSSIGRTGLGGSGMMSQA 425 Query: 141 VSDTVVLHG---MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQ 195 +++ G T V + + + S +K+ L Q Sbjct: 426 LNNAGRNDGSQTQATTQFSLGPLVRVVADEFNNALLIYAPGSEYRKIEAALRRLDLSPTQ 485 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFVSEGGDFSVKGVLD 252 V ++ +I EV + G Q G G S F FS Sbjct: 486 VLIEASILEVTLSDETRFGLQWFFEGKLGGDYRGSGLFTDRASETLGRTVPGFSYSITNA 545 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVT 308 VL+A+ + + + ++ P++ + +A G Q T +TS+ Sbjct: 546 AGQVRAVLNAMAQKSLVNVISSPSVMVLDNHTAVIHVGDQQPIRSTQTVTDGGTTSTSIQ 605 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 D GV+L TP+ + G + + I+ V++ +A S+ R+ + V + +G T+ Sbjct: 606 YKDTGVMLQVTPSANAGGMVAMDIKQSVTDVGAVDDATGQRSFNQREVASKVAVRTGETV 665 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +L GL++D K G+P L IP+LG LF + TE+ + TP +V+ Sbjct: 666 ILGGLIRDSDTNGKTGVPWLHDIPVLGPLFGTTSDVTRRTELLVMITPRVVQ 717 >gi|225024352|ref|ZP_03713544.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC 23834] gi|224942849|gb|EEG24058.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC 23834] Length = 707 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 105/251 (41%), Gaps = 16/251 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--------------GSSSGPS 227 ++++ L++ QV ++ I E + +G + G ++G + Sbjct: 449 ERLIEQLDVPAR-QVMIEARIVEANDGFSRALGVKFGYNKTSGSTRIGSGLGSGGANGNT 507 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 S A + +S ++ L + L A++ + ++ P + + A+ Sbjct: 508 FSIAPNVNLPAISATSSITIVRALSSGALGLELTAMQEQNRGKIISSPRVLTQDRKEATI 567 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 +G + Y+ SSS ++ + + + L TP + G + + I+ + Sbjct: 568 KAGREIPYQEASSSGATST-SFKEAVLGLTVTPQITPDGNVIMDIKLNKDSVDENCSVLG 626 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P ++ T + GGTI+L G+ +++ + +PLL IP++G LFR +R N + Sbjct: 627 TPCINTKELVTRAMVEDGGTIILGGIYEEENSNSQYKVPLLGDIPVVGNLFRGTRRNNSK 686 Query: 408 TEIFIAATPFL 418 E+ I TP + Sbjct: 687 NELLIFITPRI 697 >gi|321226537|gb|EFX51587.1| Type IV pilus biogenesis protein PilQ [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 389 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 Q + +D L + + +I ++ + + + + Sbjct: 69 HSQAWQKEHSARQDAERLRFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKR 128 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A + +K ++ +++ QV L I + L+++G + ++ ++ Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S V G ++ + L ALE+ + +A P L A Sbjct: 188 GSVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHL 247 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 368 DGKEDERRELVVFITPRLV 386 >gi|91212863|ref|YP_542849.1| outer membrane porin HofQ [Escherichia coli UTI89] gi|117625659|ref|YP_858982.1| outer membrane porin HofQ [Escherichia coli APEC O1] gi|218560448|ref|YP_002393361.1| outer membrane porin HofQ [Escherichia coli S88] gi|237703118|ref|ZP_04533599.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA] gi|91074437|gb|ABE09318.1| protein transport protein HofQ precursor [Escherichia coli UTI89] gi|115514783|gb|ABJ02858.1| putative transport protein HofQ precursor [Escherichia coli APEC O1] gi|218367217|emb|CAR04991.1| fimbrial transporter [Escherichia coli S88] gi|226902382|gb|EEH88641.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA] gi|294490021|gb|ADE88777.1| protein transporter HofQ [Escherichia coli IHE3034] gi|312947939|gb|ADR28766.1| outer membrane porin HofQ [Escherichia coli O83:H1 str. NRG 857C] gi|323950048|gb|EGB45931.1| type IV pilus secretin PilQ [Escherichia coli H252] gi|323954672|gb|EGB50454.1| type IV pilus secretin PilQ [Escherichia coli H263] Length = 412 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 79/413 (19%), Positives = 157/413 (38%), Gaps = 21/413 (5%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISI--GLNKVIILQVPVDVQDVLVSDPTK 76 + + +P ++ A + + ++ + + + K+ ++ P V + Sbjct: 6 AALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQVLAEQEKLNLVVSPDVSGTVSLHLTDV 65 Query: 77 -----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 VV S L + G + + D + ++ + Sbjct: 66 PWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQEAEQTRAQANLPL 117 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + NI ++ + + + T N+ A S+ ++ ++ +++ Sbjct: 118 ENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSTLEQWVSQMDLP 177 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK--- 248 QV L I + L+++G + ++ + G + Sbjct: 178 -VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATATTHIGFNI 236 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G ++ + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 237 GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVE 296 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + + + TPTVL GRI L++ V V+ G++ + ++ +T VE+ SG Sbjct: 297 FKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGE 356 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 357 TLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|213970091|ref|ZP_03398223.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato T1] gi|301381448|ref|ZP_07229866.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato Max13] gi|302061436|ref|ZP_07252977.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato K40] gi|302133002|ref|ZP_07258992.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925195|gb|EEB58758.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato T1] Length = 775 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 101/261 (38%), Gaps = 19/261 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244 QV ++ I EV+ +G Q S T + + G + Sbjct: 501 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 560 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298 S + + L ALE + L+ P+L ++ Q A G Sbjct: 561 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 620 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355 +++T +SV GV+L P + G + + IQ +VS+ G + P R Sbjct: 621 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 680 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V SG T++L GL+K D + +P L +IP L LF NS +++ TE+ + T Sbjct: 681 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 740 Query: 416 PFLVKPVAMRDLSRPDDHYSV 436 P ++ + + D Y Sbjct: 741 PRVI--TSSSQARQVTDDYRQ 759 >gi|145632680|ref|ZP_01788414.1| competence protein E [Haemophilus influenzae 3655] gi|144986875|gb|EDJ93427.1| competence protein E [Haemophilus influenzae 3655] Length = 401 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 142 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLAGNSFENIADNLNVNFATTT 201 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 202 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 261 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 262 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 321 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 322 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 381 Query: 417 FLVKP 421 ++K Sbjct: 382 HILKA 386 >gi|323974808|gb|EGB69920.1| type IV pilus secretin PilQ [Escherichia coli TW10509] Length = 412 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 82/426 (19%), Positives = 162/426 (38%), Gaps = 31/426 (7%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L PSV P + + + + +K+++ ++ + V + Sbjct: 1 MKQWIAALLLMLIPSVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSL 60 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI---- 120 + DV + + K+ G ++ +G + + + D Sbjct: 61 HLTDV------------PWKQALQTVVKSAG----LITRQEGNILSVHSVAWQNDNIARQ 104 Query: 121 AHLEMTLRRFIADSN--IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 + ++ + N I ++ + + + T N+ A Sbjct: 105 EAEQARVQASLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKAAL 164 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ ++ + +++ QV L I + L+++G + ++ + G Sbjct: 165 SALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDL 223 Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V G ++ + L ALE+ + +A P L A Q AS G + Y Sbjct: 224 SVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 283 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRV 353 + S +GATSV + + + TPTVL GRI L++ V V+ G++ + Sbjct: 284 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 343 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 344 QEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVF 403 Query: 414 ATPFLV 419 TP LV Sbjct: 404 ITPRLV 409 >gi|239995641|ref|ZP_04716165.1| general secretion pathway protein D [Alteromonas macleodii ATCC 27126] Length = 683 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 71/330 (21%), Positives = 121/330 (36%), Gaps = 47/330 (14%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 ++I+ E + S A E S + S ++V+ L+I Sbjct: 290 SASIQAEEQGGGTTSRRAGSNREISIDAHEDSNAIV--ITAEPDMMRSLEEVVRQLDIR- 346 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------ 240 QV ++ I EV +G Q + + G V+ Sbjct: 347 RAQVQVEAIIVEVFEGDGTTLGVQWASEAGGGTQFSNGVVPVGSLAVALKQAEDDTDTEA 406 Query: 241 -------------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 GG + + + V+ A+ T LA P Sbjct: 407 YVTDDGEVVTVNTTDEGDYTALASLLGGANGLIAGVIENGWGAVVQAVSTDTNSNILATP 466 Query: 276 TLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LT + + A F G + T ++S +V + G+ L TP + + L Sbjct: 467 HLTTMDNEEAFFIVGQEVPIITGTTTGANNSNPFQTVDRQEVGIKLKVTPQINEGDAVQL 526 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 I+ EVS + S R+ TTV + GGTIVL GL+ +D+Q+ + +PLL Sbjct: 527 LIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESESKVPLLGD 584 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420 IPILG LF+++ ++ + + + P +V+ Sbjct: 585 IPILGHLFKSTSTSKRKRNLMVFLKPTIVR 614 >gi|89074487|ref|ZP_01160964.1| putative type II secretory pathway, component EpsD [Photobacterium sp. SKA34] gi|89049775|gb|EAR55325.1| putative type II secretory pathway, component EpsD [Photobacterium sp. SKA34] Length = 672 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 77/465 (16%), Positives = 162/465 (34%), Gaps = 84/465 (18%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKV-----IILQVPVDVQ----DVLVSDPTKADV 79 AN +I + + I +++ ++ + ++ + AD Sbjct: 158 YDPANIIMITGRAAVVNRLADIIERVDRAGNKDVTVVSLNNASAPEMVRIVEALNKSADA 217 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN---- 135 +L K V +++ D + + L L + +A S Sbjct: 218 KSTPG---FLIPKAV------ADERTNSVLISGDPKVRERLKALIHKLDKEMAASGNSRV 268 Query: 136 --IRVEMVSDTV-VLHGMVRTIQDS-------------QRAVELSETFLSQS--GRNQYA 177 ++ +D V VL G+ IQ + + + + Sbjct: 269 IYLKYAKAADMVDVLKGVSENIQAANKSNTPQVSQSSKDEVMISAHDATNSLIISAPSDV 328 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + + +++ L+I QV ++ I EV+ G Q + A GG Sbjct: 329 MNKLESIISQLDIR-RAQVHIEAMIVEVQEGDGVNFGVQFGSQDGGVIQFGNSGAPIGGL 387 Query: 238 FVSE-------------------------------------GGDFSVKGVLDRFSFETVL 260 ++ GG + + ++ Sbjct: 388 LSAQEAAKDRTKTETRYDADGKPYSYETTESGDLAPMAAFLGGIKGAAAAITMGDWTALV 447 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVV 315 A+++ + L+ P +T + Q A+ + G + T S + T+V D G+ Sbjct: 448 TAIKQNRNVNVLSTPNVTVLDNQEANLSVGQEVPVTTGSQTGSNNDNPFTTVERKDVGIQ 507 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + + ++I+ VS+ A D+ + R+ T+V + G I L GL++ Sbjct: 508 LKVTPQINEGDSVQMKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLMQ 566 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + ++ +P+L IP+LGALFR++ E+T + + P +++ Sbjct: 567 EKTLESEQKVPILGDIPVLGALFRSTNNQTEKTNLMVFIRPTILR 611 >gi|304397810|ref|ZP_07379686.1| type IV pilus secretin PilQ [Pantoea sp. aB] gi|304354521|gb|EFM18892.1| type IV pilus secretin PilQ [Pantoea sp. aB] Length = 423 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 70/431 (16%), Positives = 152/431 (35%), Gaps = 27/431 (6%) Query: 7 TFFTMMSIFLFSSNPSVAK--LPPIKEANAAVINISDVEIGKGKKISI----GLNKVIIL 60 + + + + P A P + A + + ++ ++ + + L Sbjct: 2 VWIATLLLVISCLLPVYAADEEPLSLTFDNAPVERILQALADYQQFNLMIAPEVEGSLSL 61 Query: 61 QVPV-DVQDVLVSDPTKADVVVHS-PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++ L A + + + ++ ++ +Q + + Sbjct: 62 RLDNLPWHQALDLVARMAKLTLIEQDNVLLVYPES--------WQQAQQQARAAEQQAQL 113 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 L+ S V +L + T A Sbjct: 114 QQVPLQQRAVTLRYASASEVHAS----LLSERQSLMTARGSVTVDKRTNALLLRDTAAAL 169 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADF 234 +++ + L++ +Q+ L I + + L+++G + + + + Sbjct: 170 KETERWIRALDLPL-EQIELSAHIVTISEEHLQELGVKWGLQAGDAAVTDILHHPRLDIP 228 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + + L ALE+ I +A P L Q+AS G + Sbjct: 229 LALSSPGISVGMALARIGGQLLDLELSALEQENQIEIIASPRLFTSHQQTASIKQGTEIP 288 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYR 352 Y+ + ++GATS+ + + + TPT+ GRI L+I+ + P I ++ S Sbjct: 289 YEVSAGNSGATSIEFKEAVLGMEVTPTLSGNGRIQLKIRISQNMPGRSIRTGDSNILSID 348 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 ++ +T V + G T+ L G+ + + + +PLL +P++G LFR R++ E+ I Sbjct: 349 KQEIETQVTVSDGQTLALGGIFQQQRSRGENKVPLLGNVPLIGGLFRQQSEQRKKRELVI 408 Query: 413 AATPFLVKPVA 423 TP LV+ A Sbjct: 409 FITPRLVREAA 419 >gi|289824820|ref|ZP_06544263.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 389 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 Q + +D L + + + +I ++ + + + + Sbjct: 69 HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKR 128 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A + +K ++ +++ QV L I + L+++G + ++ ++ Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + V G ++ + L ALE+ + +A P L A Sbjct: 188 GAVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 368 DGKEDERRELVVFITPRLV 386 >gi|330720479|gb|EGG98780.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC2047] Length = 332 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 13/239 (5%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAADFGGKFVSEGG 243 QV ++ I R KQ+G + T G S + Sbjct: 93 RQVQVEARIVIARDTFDKQLGIRWGFTAQGGGSSDRTLTTGGGGLAGDVAVDLGVSGATS 152 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + V + + L ALE +++P L GQ+A SG + Y+ SS+G Sbjct: 153 ALQLGFVHGNDTLDLTLSALESDGVSEVVSQPKLITADGQTARIESGVEIPYQEA-SSSG 211 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 ATSV+ D + L TP + RI + ++ V++ +G +PS R+ T V + Sbjct: 212 ATSVSFKDAVLALEVTPQITPDDRIIMDLK--VNKDSVGEIFLGIPSVDTREIQTQVLVE 269 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +G T+VL G+ + + + P L IP+LG LF+ ++TE+ I TP L+K Sbjct: 270 NGETVVLGGVYERETIENISKTPFLGDIPVLGELFKRKTKEDDKTELLIFITPKLIKDT 328 >gi|188492932|ref|ZP_03000202.1| protein transporter HofQ [Escherichia coli 53638] gi|188488131|gb|EDU63234.1| protein transporter HofQ [Escherichia coli 53638] Length = 412 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 82/426 (19%), Positives = 160/426 (37%), Gaps = 31/426 (7%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ ++ + V + Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSL 60 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI---- 120 + DV + + K+ G ++ +G + I + + Sbjct: 61 HLTDV------------PWKQALQTVVKSAG----LITRQEGNILSVHSIAWQNNNIARQ 104 Query: 121 AHLEMTLRRFIADSN--IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 + + + N I ++ + + + T N+ A Sbjct: 105 EAEQARAQANLPQENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTAL 164 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ ++ + +++ QV L I + L+++G + ++ + G Sbjct: 165 SALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDL 223 Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V G ++ + L ALE+ + +A P L A Q AS G + Y Sbjct: 224 SVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 283 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353 + S +GATSV + + + TPTVL GRI L+ I V V+ G++ + Sbjct: 284 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 343 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 344 QEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVF 403 Query: 414 ATPFLV 419 TP LV Sbjct: 404 ITPRLV 409 >gi|311280237|ref|YP_003942468.1| general secretion pathway protein D [Enterobacter cloacae SCF1] gi|308749432|gb|ADO49184.1| general secretion pathway protein D [Enterobacter cloacae SCF1] Length = 647 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 9/247 (3%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFV 239 +KV++ L+I QV ++ IAEV+ +G Q + G+ + Sbjct: 331 EKVIDKLDIR-RAQVLVEAIIAEVQDGSGLDVGVQWTSQHGGTQFTSTGLPIGQVKNGKN 389 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G + F ++ AL L+ P++ + + ASF G + S Sbjct: 390 TGIGFNGLATGFFNGDFGALMTALSTDGKNDILSTPSVVTLDNKEASFNVGQDVPVLSGS 449 Query: 300 SS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353 + +V G L P + I L+I+ EVS P++ Sbjct: 450 QTTSGDNVFNTVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDSNATEDASLGPTFNT 509 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R + V + SG T+VL GL++ + +Q +PLL IP++G LFR + + + + + Sbjct: 510 RTINNEVMVHSGQTVVLGGLIESNTKQSVSKVPLLGDIPLVGQLFRYTSQDTSKRNLMVF 569 Query: 414 ATPFLVK 420 +++ Sbjct: 570 IHTTVLR 576 >gi|45657443|ref|YP_001529.1| general secretory pathway protein D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294828092|ref|NP_712556.2| type II secretory pathway component protein D [Leptospira interrogans serovar Lai str. 56601] gi|45600682|gb|AAS70166.1| general secretory pathway protein D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293385940|gb|AAN49574.2| type II secretory pathway component protein D [Leptospira interrogans serovar Lai str. 56601] Length = 596 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 96/253 (37%), Gaps = 18/253 (7%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV L+V I E+ L G G + G S + S G L Sbjct: 312 ARKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSNGQVNPNINTL 371 Query: 252 DRFSFETV----------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 FS + L A + L+ P + + Q A + G +T S + Sbjct: 372 SGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQDVPVRTQSRN 431 Query: 302 TGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 G + G+ L FTP V +I L + E+ AG P++ Sbjct: 432 AGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNKITLELFQEIKNIAEIALAGGNPTFNR 491 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+ T++ + + +IV+ GL+ +D Q+ IP L IP LG LF+ + ++T + + Sbjct: 492 REIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTEKIKKTNLMVF 551 Query: 414 ATPFLVKPVAMRD 426 TP ++ D Sbjct: 552 ITPHILDSRETAD 564 >gi|195873801|ref|ZP_02699139.2| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197248588|ref|YP_002148409.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|195632392|gb|EDX50876.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212291|gb|ACH49688.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 389 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 Q + +D L + + + +I ++ + + + + Sbjct: 69 HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKR 128 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A + +K ++ +++ QV L I + L+++G + ++ ++ Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + V G ++ + L ALE+ + +A P L A Sbjct: 188 GAVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 368 DGKEDERRELVVFITPRLV 386 >gi|322614138|gb|EFY11074.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618029|gb|EFY14922.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625356|gb|EFY22182.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322632290|gb|EFY29041.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636359|gb|EFY33066.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643215|gb|EFY39784.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644783|gb|EFY41319.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651192|gb|EFY47576.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654940|gb|EFY51255.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322663102|gb|EFY59306.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668588|gb|EFY64741.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674608|gb|EFY70701.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678186|gb|EFY74247.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682557|gb|EFY78578.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684270|gb|EFY80276.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192175|gb|EFZ77407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196399|gb|EFZ81551.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201800|gb|EFZ86863.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206342|gb|EFZ91303.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211936|gb|EFZ96763.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216841|gb|EGA01564.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222240|gb|EGA06623.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323228183|gb|EGA12314.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233550|gb|EGA17643.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323236988|gb|EGA21055.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243797|gb|EGA27813.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323255748|gb|EGA39498.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323267633|gb|EGA51115.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268514|gb|EGA51981.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 389 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 Q + +D L + + + +I ++ + + + + Sbjct: 69 HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKR 128 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A + +K ++ +++ QV L I + L+++G + ++ ++ Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + V G ++ + L ALE+ + +A P L A Sbjct: 188 GAVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 368 DGKEDERRELVVFITPRLV 386 >gi|332289551|ref|YP_004420403.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179] gi|330432447|gb|AEC17506.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179] Length = 380 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 57/306 (18%), Positives = 118/306 (38%), Gaps = 28/306 (9%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 + ++ + +L G+ + + L + ++ K++++ L+ G Sbjct: 61 NELYKIFNENGNGLLSGLSGFSVEPSNNLLLVK-------GDKQQIQKFKQLISQLDKPG 113 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGK 237 + Q+ ++ I + + L ++G + + S +F Sbjct: 114 K-QIAIEARIVTINNESLNELGVRWGMFSDADNFHKVAAKFDSFGLENLSSHLNVNFSTS 172 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + V + R + L ALE+ + +A P L + + AS G + Y Sbjct: 173 SEAASIALQVAKIHGRL-LDLELKALEQENNVEIIASPHLLTSNQRKASIKQGSEIPYVI 231 Query: 298 VSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRV 353 + + T + + + L TP VL G I L + + + AG + + Sbjct: 232 EDDTERSSRTHIEFKEAVLGLEVTPQVLHQGVISLDLVVTQNSAGASIPYGAGQVVTIDK 291 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 ++ + V + G T+VL G+ D I + + +PLL IP LG LF + ++ E+ I Sbjct: 292 QEVQSQVLVRDGETVVLGGIFHDLIGKGENKVPLLGDIPGLGKLFSSKSERHQKRELVIF 351 Query: 414 ATPFLV 419 TP ++ Sbjct: 352 ITPRII 357 >gi|121999148|ref|YP_001003935.1| general secretion pathway protein D [Halorhodospira halophila SL1] gi|121590553|gb|ABM63133.1| general secretion pathway protein D [Halorhodospira halophila SL1] Length = 670 Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 79/449 (17%), Positives = 150/449 (33%), Gaps = 40/449 (8%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L A+L E N +++ + IG+ K++ +++ V + + Sbjct: 165 LLRPLISDEAELAAYSETNTLIVSETAGNIGRLKRLIDRVDQDTTGVTEVVPLEHGSASE 224 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 V P + + + ++ D + L L + D Sbjct: 225 IVEMVEAIEPEK-----RAGRRLLLAADDRSNSVLVGGDPARRPSVMELIQRLDAELEDE 279 Query: 135 NIRV-----EMVSDTVV--LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182 ++++V L GM + ++ N Sbjct: 280 EGAAVIYLRYSDAESIVPILEGMAEGMARGPEGETGVSIHDHEATNALIINGPPDLVAKL 339 Query: 183 -KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-- 239 V+N L++ QV ++ IAEV + +++G Q G +F A GG Sbjct: 340 RGVVNRLDVR-RAQVLVEAIIAEVSAERSQELGIQWGALGDQGVGLVNFDAAGGGSVTNI 398 Query: 240 --------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 S G + +L AL + L+ P++ + + A Sbjct: 399 GRAAAGGTDALGNLSLGSGLTAGAATRGGELGVLLRALSSESDSNILSTPSVMTMDNEEA 458 Query: 286 SFTSGGQHLYKTVS---SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G + T + S+ D GV L P + + L I+ EVS+ Sbjct: 459 EIVVGQNVPFVTGREVGDTRDFQSIQREDVGVQLRIRPQINEGDSLKLDIEKEVSDVQER 518 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 A D+ +R T+ + G +VL GL+ + + + +P L IP LG LFR Sbjct: 519 GEAEDI-VTSMRSITTSAMVDDGEIMVLGGLMDEQAESQTDRVPGLGSIPGLGWLFRYES 577 Query: 403 FNREETEIFIAATPFLVKPV-AMRDLSRP 430 ++ + + P +++ R+L+ P Sbjct: 578 SAAQKQNLMVFLRPRIIENRDDARELTSP 606 >gi|331006529|ref|ZP_08329826.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC1989] gi|330419665|gb|EGG94034.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC1989] Length = 678 Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 6/241 (2%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKF 238 K ++N +++ QV ++ I +++ GF + +S+ + + F Sbjct: 434 KSLINKVDVPVR-QVMIEARIVSATDTFMEEFGFFVGASDTSTANNPNLTTSALSDATVF 492 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G V V + S + ALE + +++P + Q+A +SG Q + + Sbjct: 493 NPVGSVLDVSYVSNGVSLALEIQALEDSGYGEVVSQPRVLTGDKQTAKISSGQQIPFTSS 552 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 T T D + L TP + RI + ++ V + T Sbjct: 553 DGDTVTTI--FQDAVLSLEVTPQITPDNRIIMELKVNRDSLDTSTVTVSGSPINVTELTT 610 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 T + G TIVL G+ + +P+L IP+LG LF ++ + TE+ I TP + Sbjct: 611 TALVGDGDTIVLGGIYEQTKTSSVSKVPVLGDIPVLGRLFTSNTDQDDRTELLIFITPRI 670 Query: 419 V 419 + Sbjct: 671 L 671 >gi|330972847|gb|EGH72913.1| general secretion pathway protein D [Pseudomonas syringae pv. aceris str. M302273PT] Length = 775 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 110/305 (36%), Gaps = 20/305 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G +++ S R + + + L+ QV ++ I EV+ Sbjct: 458 GNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVQLT 516 Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G Q S T + + G + + + + L Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTSGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGV 314 ALE + L+ P+L ++ Q A G S+ T +SV GV Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNSSTDTTLSSVEYVQTGV 636 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 +L P + G + + IQ +VS G +A P R T V SG T++L Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTDTTGNDANGNPRISTRSVATQVAAQSGQTVLLG 696 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + + Sbjct: 697 GLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKNRTELIVLITPRVI--TSSSQARQVT 754 Query: 432 DHYSV 436 D Y Sbjct: 755 DDYRQ 759 >gi|90581085|ref|ZP_01236885.1| putative type II secretory pathway, component EpsD [Vibrio angustum S14] gi|90437781|gb|EAS62972.1| putative type II secretory pathway, component EpsD [Vibrio angustum S14] Length = 674 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 120/314 (38%), Gaps = 48/314 (15%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + + + + + +N + + +++ L+I QV ++ I EV+ Sbjct: 302 SQSSKDEVMISAHDATNSLIISAPSNVMNKLESIISQLDIR-RAQVHIEAMIVEVQEGDG 360 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------------------- 241 G Q S + A GG ++ Sbjct: 361 VDFGVQWGSQDGSVIQFGNSGAPIGGLLSAQEAAKDKTTTQKRYDPDTGAELPPIVTTES 420 Query: 242 ----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 GG + + ++ A++ + L+ P +T + Q A+ + G Sbjct: 421 GDLAPMAAFLGGVKGAAAAIALGDWTALVTAVQANRNVNVLSTPNITVLDNQEANLSVGQ 480 Query: 292 QHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + T S + T+V D G+ L TP + + ++I+ VS+ A Sbjct: 481 EVPVTTGSQTGSNNDNPFTTVERKDVGIQLKVTPQINEGDSVQMKIEQVVSQVADANGAV 540 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+ + R+ T+V + G I L GL+++ + ++ +P+L IP+LGALFR++ E Sbjct: 541 DI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVPILGDIPVLGALFRSTNNQTE 599 Query: 407 ETEIFIAATPFLVK 420 +T + + P +++ Sbjct: 600 KTNLMVFIRPTILR 613 >gi|148874|gb|AAA24947.1| ORF 1 [Haemophilus influenzae] Length = 371 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + I + + + +F Sbjct: 112 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 171 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 172 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 231 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P V ++ S ++ Sbjct: 232 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 291 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 292 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 351 Query: 417 FLVKP 421 ++K Sbjct: 352 HILKA 356 >gi|152978367|ref|YP_001343996.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z] gi|150840090|gb|ABR74061.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z] Length = 482 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 100/245 (40%), Gaps = 18/245 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + + ++G S + +F Sbjct: 195 EQIAIEARIVTMNDESLKELGVRWGMFEPTAGAHKVSGSLAANGFTDISNNLNVNFATAT 254 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + G ++ + L ALE+ + +A P L + ++AS G + Y Sbjct: 255 MPAGSVALQVAKINGRLLDLELTALEQEKNVEIIASPRLLTTNKKAASIKQGTEIPYVVT 314 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRK 355 + SV + + L TP + I + + + P V+ ++ S ++ Sbjct: 315 NGKNDTQSVEFREAVLGLEVTPHISQNNAILMDLTVSQNSPGNRVSYGENSEVVSIDKQE 374 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V G TIVL G+ D + + +P+L IP++ LF N R++ E+ I T Sbjct: 375 IKTQVFAKDGETIVLGGVFHDTVTKGSNKVPVLGDIPVIKHLFGNHSERRQKRELVIFVT 434 Query: 416 PFLVK 420 P ++K Sbjct: 435 PRILK 439 >gi|161505946|ref|YP_001573058.1| outer membrane porin HofQ [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867293|gb|ABX23916.1| hypothetical protein SARI_04127 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 400 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 81/406 (19%), Positives = 156/406 (38%), Gaps = 18/406 (4%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK----AD 78 + K AN ++ + + ++ + ++ P + + A Sbjct: 1 MPAAQAGKAANVTLVVDDVPVVQVLQALA-EQERQNLVASPDVSGTLSLHLMDVPWRQAL 59 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V S + L + G + + Q + +D L++ + + +I + Sbjct: 60 QTVASSAGLVL--RQEGNI-LHV----HSQAWQKEHHARQDAERLKLQANLPLENRSISL 112 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + + + + T N+ A + +K ++ +++ QV L Sbjct: 113 QYADAAELAKAGEKLLSAKGTITVDKRTNRLLLRDNRTALAELEKWVSQMDLP-VAQVEL 171 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFS 255 I + L+++G + ++ + + V G ++ Sbjct: 172 AAHIVTINEKSLRELGVKWTLADAQQAGAVGDVTMLSSDLSVAAATSRVGFNIGRINGRL 231 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + L ALE+ + +A P L A Q AS G + Y+ S +GATSV + + Sbjct: 232 LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLG 291 Query: 316 LHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + TPTVL GRI L+ I V V+ G++ + ++ +T VE+ SG T+ L G+ Sbjct: 292 MEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGI 351 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + ++ +PLL IP LG LFR+ E E+ + TP LV Sbjct: 352 FSRKNKSGRDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 397 >gi|16131268|ref|NP_417850.1| protein required for the utilization of DNA as a carbon source; fimbrial transporter homolog [Escherichia coli str. K-12 substr. MG1655] gi|74313896|ref|YP_312315.1| outer membrane porin HofQ [Shigella sonnei Ss046] gi|89110619|ref|AP_004399.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr. W3110] gi|157158971|ref|YP_001464845.1| outer membrane porin HofQ [Escherichia coli E24377A] gi|170082908|ref|YP_001732228.1| fimbrial transporter [Escherichia coli str. K-12 substr. DH10B] gi|218555936|ref|YP_002388849.1| outer membrane porin HofQ [Escherichia coli IAI1] gi|229774932|ref|YP_690743.2| outer membrane porin HofQ [Shigella flexneri 5 str. 8401] gi|238902482|ref|YP_002928278.1| putative fimbrial transporter [Escherichia coli BW2952] gi|256025882|ref|ZP_05439747.1| outer membrane porin HofQ [Escherichia sp. 4_1_40B] gi|293453697|ref|ZP_06664116.1| hofQ [Escherichia coli B088] gi|307140075|ref|ZP_07499431.1| outer membrane porin HofQ [Escherichia coli H736] gi|331644090|ref|ZP_08345219.1| protein transport protein HofQ [Escherichia coli H736] gi|1170332|sp|P34749|HOFQ_ECOLI RecName: Full=Putative DNA transport protein HofQ; Flags: Precursor gi|606325|gb|AAA58188.1| hopQ [Escherichia coli str. K-12 substr. MG1655] gi|1789793|gb|AAC76416.1| protein required for the utilization of DNA as a carbon source; fimbrial transporter homolog [Escherichia coli str. K-12 substr. MG1655] gi|73857373|gb|AAZ90080.1| putative transport portein [Shigella sonnei Ss046] gi|85676650|dbj|BAE77900.1| predicted fimbrial transporter [Escherichia coli str. K12 substr. W3110] gi|157081001|gb|ABV20709.1| protein transporter HofQ [Escherichia coli E24377A] gi|169890743|gb|ACB04450.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr. DH10B] gi|218362704|emb|CAR00330.1| fimbrial transporter [Escherichia coli IAI1] gi|238862385|gb|ACR64383.1| predicted fimbrial transporter [Escherichia coli BW2952] gi|260447590|gb|ACX38012.1| type IV pilus secretin PilQ [Escherichia coli DH1] gi|291321823|gb|EFE61254.1| hofQ [Escherichia coli B088] gi|315137967|dbj|BAJ45126.1| outer membrane porin HofQ [Escherichia coli DH1] gi|323939390|gb|EGB35601.1| type IV pilus secretin PilQ [Escherichia coli E482] gi|331036384|gb|EGI08610.1| protein transport protein HofQ [Escherichia coli H736] Length = 412 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 81/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + + + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +I ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|83647301|ref|YP_435736.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC 2396] gi|83635344|gb|ABC31311.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC 2396] Length = 647 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 76/458 (16%), Positives = 164/458 (35%), Gaps = 52/458 (11%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVL 70 + L L + AN +I+ I + ++I L+ Q+ V ++D Sbjct: 141 LVPILRPMVAKYGHLAGVAAANGLIISDHVNNIARIERIVSELDSPSNYQLEVIQLKDAW 200 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQAN---VILIGHDGKQMLNLDILIERDIAHLEMTL 127 V D + +P + G G AN V+ + +L D + L L Sbjct: 201 VGD-MVKLLEELAPSEL-GKGAPKGPANKFSVVADERSNRLILKGDENFRDKMRLLIAKL 258 Query: 128 RRFIADSNIR-------VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + A S + + +L G++ I ++ + + + Sbjct: 259 DQPAAVSGTTKVINLRHADAEALAELLKGLMGEIAPAKGEGAAAAPGGGKVSIYPDEGLN 318 Query: 181 S-------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + + ++ L++ QV ++ I E+ + +Q+G Q + + Sbjct: 319 ALVVRAEPSMMKEIEAIVQQLDVR-RAQVLIEAAIVEISDGLSRQLGVQMAAGDLTGKSG 377 Query: 228 KSFAADFGG------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + +F + ++ R + ++ AL + Sbjct: 378 PATVTNFTNVGISASAILAAIASNSTPSIGGDIAAVAIGEAEGRKGWGALIQALGTSGQA 437 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLY-------KTVSSSTGATSVTTHDYGVVLHFTPTV 322 L+ P++ + + G + T +S T++ D G+ L TP++ Sbjct: 438 NLLSTPSIITMDNLQSEIIVGQNVPFRTGQTGTGTDGTSNPFTTIERQDVGLTLRVTPSI 497 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + L I+ E S + R+ T+V + TIVL GL+ ++ + + Sbjct: 498 SDGDLVRLEIEQESSSIAPSNESASDIITNKRQIKTSVLADNAETIVLGGLMSENYKLSE 557 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +PLL IP+LGALFR+++ +++ + + P +++ Sbjct: 558 AKVPLLGDIPLLGALFRSTKREKDKQNLLVFLRPTILR 595 >gi|330839785|ref|YP_004414365.1| type II and III secretion system protein [Selenomonas sputigena ATCC 35185] gi|329747549|gb|AEC00906.1| type II and III secretion system protein [Selenomonas sputigena ATCC 35185] Length = 447 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 78/438 (17%), Positives = 174/438 (39%), Gaps = 23/438 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 + F+ A P E A + I + + + L+ + ++ Sbjct: 3 ISPRVGAFFLAAWFAGALPAAASPLTLEVVDADVTALLTSIARLSGLDLILDDSVKGRIS 62 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI--LIERDIA 121 + ++DV +P +A +++ + + + ++ G+ ++ + + + + D+ Sbjct: 63 LSLKDV---EPEEALMLISRAKGLAV--QHEGKVLLVRAAKEAAPFYRMHVLPVHHADLD 117 Query: 122 HLEMTLRRFIADSNIRV---EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 ++ + ++ I + + + ++ + L G + Sbjct: 118 TAFAAVKLSLGEAGISAIDENKKNGKEDISEQGLYRTGERLLIDRATNALLFYGTEEE-K 176 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++ V++ L++ +QV+L+ + + ++ K++G + P + + G Sbjct: 177 ARAEAVLHSLDVPT-EQVSLEARVVALEKNAAKELGVDWDWSPLPIDPHGTSKSGAEGSR 235 Query: 239 VSEGGDFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G+ R + + AL LA P +T + G+ A G Sbjct: 236 RGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLARPNITTLQGREAVINIG 295 Query: 291 GQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 G ++ + + G++L +TP + G I R+ TEVS PV V+A Sbjct: 296 GSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARVHTEVSSPVY-VDALKA 354 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ R ADTTV L G T+V+ GL+ + ++ +PLL IPILG F++ R + ++ Sbjct: 355 YKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIPILGTFFKSVRRTKTDS 414 Query: 409 EIFIAATPFLVKPVAMRD 426 EI I T +++ + Sbjct: 415 EIMIFLTAHILRDTSPPA 432 >gi|126665040|ref|ZP_01736023.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17] gi|126630410|gb|EBA01025.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17] Length = 640 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 85/462 (18%), Positives = 159/462 (34%), Gaps = 70/462 (15%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN-----KVIILQVPVDVQDV 69 L L + ANA +++ I + +++ L+ +V ++Q+ Sbjct: 144 ILRPLVAKYGHLAAVPAANALIVSDHYANIQRIEQLVKELDSPAKYEVEVIQLDEAW--- 200 Query: 70 LVSDPTKADVVVHSPRTMYLFG--KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 V D + +P + G V + +V + +L D + L L Sbjct: 201 -VGD-MVTLLQELAPDELARNGTENAVRKYSVTADERSNRLILRGDQNFRAKMRGLISQL 258 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV-----ELSETFLSQSGRNQYANSSSK 182 + A T VL + + EL + + + Sbjct: 259 DQPSASG-------GATKVLRLKNADAKSLADLLKGVMGELVRETAGDNRPSGQFAVFAD 311 Query: 183 KVMNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + +N L I G QV ++ I E+ ++ +Q+G Q + SS Sbjct: 312 EGLNALVIRGEPSLMQEAEQIVMALDIRRAQVMIEAAIVEISENMGEQLGVQLAAGDESS 371 Query: 225 GPSKSFAADFG-----------------GKFVSEGGDFSVKGVL---DRFSFETVLHALE 264 G + G + G + + ++ ++ AL Sbjct: 372 GGFPVLGTNLASGGMLGLNQVISAVLGDGTVPALAGGLTAGAGDRNRNGVTWGLLIQALS 431 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATSVTTHDYGVVLH 317 ++A L+ P++ + Q + G ++T + + T++ D G+ L Sbjct: 432 TSSAANLLSTPSIITLDNQESEIIVGQNVPFRTGQAAVSGEGLTNPFTTIERRDVGLTLK 491 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TPT+ + G + L ++ V R+ TTV G TIVL GL+KD Sbjct: 492 VTPTISADGLVRLVVEQTTENVVPTTVAGASDLITNKREIKTTVLADDGETIVLGGLMKD 551 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 D + K +PLL IP LG LF + +R + + + P + Sbjct: 552 DYEVQKSKVPLLGDIPYLGRLFSSESESRVKRNLLVFLRPTI 593 >gi|217967423|ref|YP_002352929.1| type II and III secretion system protein [Dictyoglomus turgidum DSM 6724] gi|217336522|gb|ACK42315.1| type II and III secretion system protein [Dictyoglomus turgidum DSM 6724] Length = 1421 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 13/247 (5%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 SS + ++ L+ QV + V + EV R+ +K IG + S + Sbjct: 1186 GPADQVSSVESMIAKLDKPTP-QVKIDVQVIEVSRENVKDIGIEW---------STGSIS 1235 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + G +++ + ALE R LA+P++T +SG A+ G Sbjct: 1236 TGLQITANLGWQDLRVSIVNPGQISANIRALETQNKARILAQPSMTTLSG-KATRIMIGD 1294 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 + + G V+ D G++L+ TPTV + G I I +VS V+ D+P Sbjct: 1295 RVPLISYDAQGNRQVSFVDVGIILNVTPTVNADGTITANINPQVSTIQGYVS--DVPIIS 1352 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+A T V L +G T+ L GLL+ + +PLL IPILG LF+ + + E E+ I Sbjct: 1353 TREAQTIVNLKNGETLALGGLLRQEEIDSMSKVPLLGDIPILGELFKARKTQKVERELII 1412 Query: 413 AATPFLV 419 TP L+ Sbjct: 1413 LITPKLI 1419 >gi|205356871|ref|ZP_02343070.2| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325673|gb|EDZ13512.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 389 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 Q + +D L + + + +I ++ + + + + Sbjct: 69 HSQAWQKEHSARQDAERLRLQANLPLENRSINLQYADAGELAKAGEKLLSAKGTIMVDKR 128 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A + +K ++ +++ QV L I + L+++G + ++ ++ Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELVAHIVTINEKSLRELGVKWTLADATQA 187 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S V G ++ + L ALE+ + +A P L A Sbjct: 188 GSVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 368 DGKEEERRELVVFITPRLV 386 >gi|399792|sp|P31700|GSPD1_ERWCH RecName: Full=General secretion pathway protein D; AltName: Full=Pectic enzymes secretion protein outD; Flags: Precursor gi|148434|gb|AAA24831.1| secretory component [Erwinia chrysanthemi] Length = 712 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 113/308 (36%), Gaps = 33/308 (10%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 T+V+ G T++ + L T R+ ++V+N L+I QV + Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITRPPDIMRDL------EQVINQLDIRRP-QVLV 402 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK-----------------FVSE 241 + IAE++ +G Q + + + + Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAMIGTDQFRSDGTLTTAYASAL 462 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + R ++ +L AL LA P++ + A+F G + T S + Sbjct: 463 SNFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522 Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYR 352 T +V G+ L P + + L+I+ EVS G + + ++ Sbjct: 523 TVGSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFN 582 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + V + + T+V+ GLL + +PLL IP LG+LFR+ + + + Sbjct: 583 TRTVNNAVMVTNRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML 642 Query: 413 AATPFLVK 420 P +++ Sbjct: 643 FLRPTIIR 650 >gi|222083138|ref|YP_002542503.1| general secretion pathway protein D [Agrobacterium radiobacter K84] gi|221727817|gb|ACM30906.1| general secretion pathway protein D [Agrobacterium radiobacter K84] Length = 714 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 69/277 (24%), Positives = 111/277 (40%), Gaps = 13/277 (4%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 V E Q ++++ L++ QV ++ IAEV + + G + Sbjct: 407 HTSVVADVENNALLISTTQREYEHIEQILKQLDV-MPTQVLIEAVIAEVTLNDQLKFGLR 465 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G S +D G + L+AL T + ++ PT Sbjct: 466 WFFENGKFGVGLSDLSDGSTGASFPG----FAWTFASSNVGATLNALSSITNVNIVSAPT 521 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIG 329 L A++ Q A+ G Q T S++ +S + D GV+L P V S GR+ Sbjct: 522 LMALNNQKATLQVGDQVPIVTQQSASTTSSNTAIVSSIDLKDTGVILTVLPRVNSSGRVM 581 Query: 330 LRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L IQ EVS V + D P+ + RK T V + ++ L GL++ +P+L Sbjct: 582 LDIQQEVSNVVKTTTSGIDSPTIQQRKLSTKVIVDDNESVALGGLIQQSNTLNHSQVPIL 641 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 K+PI G F+N +TE+ I P +V+ V Sbjct: 642 GKMPIFGNAFKNKEDTINKTELIIFIKPRIVRDVRQA 678 >gi|315633544|ref|ZP_07888834.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393] gi|315477586|gb|EFU68328.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393] Length = 474 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 69/410 (16%), Positives = 143/410 (34%), Gaps = 30/410 (7%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHS---PRTM 87 A + + ++ + +++ ++ + + + + +V + + A + + Sbjct: 36 KQAPLVPTLQQLALAQNVNLLIDDELQGTLTLKLDNVDLDQLFRSVAKIKQLDLWQEEGI 95 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 Y K A + + + L E +A + L A ++ +L Sbjct: 96 YYLSKRDTVAKFTGNMTEPQAIAALPSEEETSLATATIKLHFAKASEVMKSLTGGSGSML 155 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 D + + L + + K + +Q+ ++ I + Sbjct: 156 SPNGSITFDDRSNLLLIQDEPKSIANLKKLIKELDKPI--------EQIAIEARIVTINA 207 Query: 208 DILKQIGFQHSITG---------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + LK +G + I + + G ++ Sbjct: 208 ESLKDLGVRWGIFNPTENAHKIAGSLAANGFDNIANQLNVNLPTATTPAGSIALQVAKIN 267 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + L ALER + +A P L + +SAS G + Y V+ +G SV + Sbjct: 268 GRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTELPYIMVNEKSGTQSVEFREA 327 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVL 370 + L TP + +I L + + P V G ++ S ++ +T V G TIVL Sbjct: 328 VLGLEVTPHISLDKQILLDLIVSQNAPGSRVAYGLGEVVSIDKQEINTQVFAKDGETIVL 387 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G+ D I + + +PLL IP + LF ++ E+ I TP +++ Sbjct: 388 GGVFHDTITKSLDKVPLLGDIPGIKHLFSKESDRHQKRELVIFVTPHILR 437 >gi|145300643|ref|YP_001143484.1| general secretion pathway protein D [Aeromonas salmonicida subsp. salmonicida A449] gi|1170051|sp|P45778|GSPD_AERSA RecName: Full=General secretion pathway protein D; Flags: Precursor gi|516351|emb|CAA56668.1| ExeD [Aeromonas salmonicida] gi|142853415|gb|ABO91736.1| general secretion pathway protein D [Aeromonas salmonicida subsp. salmonicida A449] Length = 678 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 54/273 (19%), Positives = 100/273 (36%), Gaps = 25/273 (9%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + ++V+ L+I QV ++ I E+ +G Q + T Sbjct: 330 TAQPDVMAELEQVVAKLDIR-RAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTDTN 388 Query: 232 ----------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 G G + ++ ++ AL +T L+ P Sbjct: 389 LPIGSVAIAAKDYNENGTTTGLADLAKGFNGMAAGFYHGNWAALVTALSTSTKSDILSTP 448 Query: 276 TLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ + + ASF G + + +S ++ G L TP + + L Sbjct: 449 SIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLTVTPQINEGDSVLL 508 Query: 331 RIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I+ EVS G P++ R V + SG T+VL GL+ + Q+ +PL Sbjct: 509 NIEQEVSSVAQKQATGTADLGPTFDTRTIKNAVLVKSGETVVLGGLMDEQTQEKVSKVPL 568 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L IP+LG LFR++ + + + P +++ Sbjct: 569 LGDIPVLGYLFRSTNNTTSKRNLMVFIRPTILR 601 >gi|319785509|ref|YP_004144985.1| general secretion pathway protein D [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171397|gb|ADV14935.1| general secretion pathway protein D [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 707 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 64/279 (22%), Positives = 111/279 (39%), Gaps = 12/279 (4%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 V E +++++ +++ QV L+ IAEV + + Sbjct: 399 PPAHATVVADIENNALLIQTTARDYERIEQILSKVDV-LPTQVMLEAVIAEVTLNDDLKY 457 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G + S S A G ++S + + L+AL T + ++ Sbjct: 458 GLRWFFENGGMKISVSDVAKGVAAAALPGFNWSYAT----DNIQVTLNALSSITDVNVIS 513 Query: 274 EPTLTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 PT+ A++ Q A G Q S+ SV D GV+L TP + + GR Sbjct: 514 APTIMALNNQKAVLQVGDQVPIATRQVVDQTLGSSPVVSVEMKDTGVILTVTPRINNAGR 573 Query: 328 IGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L I+ EVS + D P+ + RK T V + G ++ L GL++ + +P Sbjct: 574 VMLDIEQEVSNVTKTTSSGIDSPTIQQRKIQTRVLVNDGESLALGGLIQSRNNVDRTQVP 633 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +L IPI+G F+ + TE+ I P +V+ + Sbjct: 634 ILGDIPIIGNAFKQKTDSIGRTELIIFIRPHVVRDINEA 672 >gi|261493374|ref|ZP_05989900.1| competence protein E [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496640|ref|ZP_05993020.1| competence protein E [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307843|gb|EEY09166.1| competence protein E [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311018|gb|EEY12195.1| competence protein E [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 437 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 99/241 (41%), Gaps = 13/241 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFV 239 +Q+ ++ I + + L+++G + I +G + + Sbjct: 185 TEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGRLEGNGLNDVTNNLNVNFPIT 244 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 ++ + L ALE+ ++ +A P L + + AS G + Y + Sbjct: 245 GGASAVLQVASINSRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYN 304 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + AT V + + L P + + +I L + + P + + + ++ +T Sbjct: 305 TKSEATDVEFKEAVLGLEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQ 364 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V G TIVL G+ + Q+ ++ +P+L IP + LF +R + E+ I TP+++ Sbjct: 365 VFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIKRLFSQTRDKISKRELVIFVTPYIL 424 Query: 420 K 420 + Sbjct: 425 Q 425 >gi|88861068|ref|ZP_01135703.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2] gi|18643169|gb|AAL76242.1|AF441248_2 WmpD [Pseudoalteromonas tunicata] gi|88816996|gb|EAR26816.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2] Length = 689 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 102/286 (35%), Gaps = 47/286 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V+ L++ QV ++ I EV +GFQ + G Sbjct: 341 EGVIAKLDVR-RAQVLVEAIIVEVFEGDGVNLGFQWINKQGGMLQFNNGTTVPVGSLGVA 399 Query: 242 G---------------------------------------GDFSVKGVLDRFSFETVLHA 262 G G + R + +L A Sbjct: 400 GELARDKTIKKTVLGTNEGSANQYEETKEGDLTALASLLGGVNGLALGFARGDWGAILQA 459 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLH 317 + T LA P++T + + AS G + T S + +V + G+ L Sbjct: 460 VSTDTNSNILATPSVTTMDNEEASMIVGQEVPIITGSQTGNNNTNPFQTVERQEVGIKLK 519 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + + L I+ EVS + R+ TTV G +VL GL+ +D Sbjct: 520 VTPQINDGSAVQLTIEQEVSSVSGATAVD--ITINKREVTTTVLADDGAMVVLGGLIDED 577 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +Q+ +PLL +PI+G LF+++ NR + + I P +++ A Sbjct: 578 VQESVSKVPLLGDLPIIGHLFKSTSTNRRKRNLLIFIRPTIIRDSA 623 >gi|259982|gb|AAB24178.1| OutD=pectic enzyme secretion protein [Erwinia chrysanthemi, Peptide, 712 aa] Length = 712 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 113/308 (36%), Gaps = 33/308 (10%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 T+V+ G T++ + L T R+ ++V+N L+I QV + Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITRPPDIMRDL------EQVINQLDIRRP-QVLV 402 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK-----------------FVSE 241 + IAE++ +G Q + + + + Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAMIGTDQFRSDGTLTTAYASAL 462 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + R ++ +L AL LA P++ + A+F G + T S + Sbjct: 463 SNFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522 Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYR 352 T +V G+ L P + + L+I+ EVS G + + ++ Sbjct: 523 TVGSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFN 582 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + V + + T+V+ GLL + +PLL IP LG+LFR+ + + + Sbjct: 583 TRTVNNAVMVTNRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML 642 Query: 413 AATPFLVK 420 P +++ Sbjct: 643 FLRPTIIR 650 >gi|261339183|ref|ZP_05967041.1| hypothetical protein ENTCAN_05409 [Enterobacter cancerogenus ATCC 35316] gi|288319030|gb|EFC57968.1| general secretion pathway protein D [Enterobacter cancerogenus ATCC 35316] Length = 643 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 106/265 (40%), Gaps = 18/265 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFV 239 +KV++ L+I QV ++ IAEV+ +G Q + G G + + + Sbjct: 331 EKVIDKLDIRRP-QVLVEAIIAEVQDGNGMDLGVQWTGKHGGVQFGATGLPISQVKNGTM 389 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + F ++ AL + L+ P++ + + ASF G + S Sbjct: 390 KGTAFTGLATGFFNGDFGALVTALSTGSKNDILSTPSVVTLDNKEASFNVGQDVPVLSGS 449 Query: 300 SS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353 + SV G L P + I L+I+ EVS P++ Sbjct: 450 QTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASATEDASLGPTFNT 509 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R + V + SG T+VL GL+++ ++ +PLL IP++G LFR + + + + + Sbjct: 510 RTINNEVMVHSGQTVVLGGLMENVTKETVSKVPLLGDIPLVGQLFRYTSEDTSKRNLMVF 569 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVED 438 +++ DD+YS Sbjct: 570 IHTTVLRD---------DDNYSAAS 585 >gi|187731764|ref|YP_001882066.1| outer membrane porin HofQ [Shigella boydii CDC 3083-94] gi|187428756|gb|ACD08030.1| protein transporter HofQ [Shigella boydii CDC 3083-94] Length = 412 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 80/425 (18%), Positives = 155/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + + + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +I ++ + + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMIVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L++ V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|119476010|ref|ZP_01616362.1| type II and III secretion system protein [marine gamma proteobacterium HTCC2143] gi|119450637|gb|EAW31871.1| type II and III secretion system protein [marine gamma proteobacterium HTCC2143] Length = 630 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 80/442 (18%), Positives = 153/442 (34%), Gaps = 39/442 (8%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M+ L A + P NA V+ I +++ L+K ++ DV+V Sbjct: 142 MAEALRPLMSKDAVIKPYLATNALVLADHASNISSAQELIQQLDK----TSDSEI-DVIV 196 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQA---NVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 A+ ++ S T+ G A + + +L D + +L L Sbjct: 197 LQHADAESILQSLSTLLPSGSQQASALNITISINERSNSILLAGDPAKRKQFRNLIKKLD 256 Query: 129 RFIADSNIR-------VEMVSDTVVLHGMVRTIQDSQR-------AVELSETFLSQSGRN 174 + + V+ +L + ++IQ +Q+ Sbjct: 257 KPLDGQGNTDVVYLHYVDASEIVPILENLAKSIQSNQKDTDSNISIEASKSANALVINAP 316 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSG 225 ++ K +++ L+I QV ++ + EVR ++ +G + Sbjct: 317 PSILTTMKSIISQLDIR-RAQVMVEAILVEVRGELASDVGVTWITDPDNSIVGAVNTLGN 375 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + A G G G + + L AL L+ PT+ AI + A Sbjct: 376 LPLANAPSDGSALPFSAGRGFTFGYFNGGDLQAALRALSATQNANILSTPTIVAIDNEEA 435 Query: 286 SFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 S G + T ++ T++ D G L TP + I L I + Sbjct: 436 SLLVGQNVPFITGQATSSASSTNDPFTTIERQDIGTSLVVTPRINQGDSITLEIHQKTET 495 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++ R+ T + +V+ GL+ D+ ++ E +PLL IP LG+LF Sbjct: 496 IAPSIDIASDIVTNKREIITKALIRDDQVLVIGGLINDEETEIIEKVPLLGDIPYLGSLF 555 Query: 399 RNSRFNREETEIFIAATPFLVK 420 + + +T + + P ++K Sbjct: 556 SSKGTSHTKTNLMVFIHPTILK 577 >gi|326796602|ref|YP_004314422.1| general secretion pathway protein D [Marinomonas mediterranea MMB-1] gi|326547366|gb|ADZ92586.1| general secretion pathway protein D [Marinomonas mediterranea MMB-1] Length = 623 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 83/474 (17%), Positives = 172/474 (36%), Gaps = 65/474 (13%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI-----SIGLNKVIILQ 61 + + L P L + E NA +I+ I + + I S ++ +++ Sbjct: 129 AVASELVPILRPLIPQYGHLAAVNEVNALIISDHAANIRELEDIISRLDSTVEGQIRVVR 188 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG---------QANVILIGHDGKQMLNL 112 + D + + S + G G + +I + +L Sbjct: 189 LKHAWA----GDL----IEMLSQ---LVEGAEAGNGRKSSASNTSKIIADERTNRLVLKG 237 Query: 113 DILIERDIAHLEMTLRR-------------FIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I L L + AD+ E+++ + ++ + Sbjct: 238 KEATLDQIEDLIQQLDQPSDSTTRLKVIPLRYADAKTTAELITGLLSAEKTAQSSDRPES 297 Query: 160 AVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 + ++ L+ + N + V++ L+I QV ++ I EV+ + +GFQ Sbjct: 298 SFVQADESLNALVVSAEPNVMADILGVLSELDIP-RAQVLIEAIIVEVKMEGSDALGFQW 356 Query: 218 SIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE--------TV 259 G++ + S D V+ S + SF + Sbjct: 357 LFGDTSDSTTPVLGTNFSSAGSSLTDIATSVVAGTPTLSNGITVGAASFNSDGDLNMAGI 416 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVV 315 L A+E + L+ P + + Q + G ++T S + + D G+ Sbjct: 417 LQAIESNSNSNLLSTPKIMTLDNQKSKILVGETRPFQTGGYSDSSSSAFVTTSREDIGLT 476 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + + + + + V ++ R+ +TTV + TIVL GL++ Sbjct: 477 LEVTPHINADNEVKMEVNQIVEAASPEASSLGT-ITTKREIETTVIAGNRKTIVLGGLIE 535 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 D++ ++++ +PLL IPILGALFR+ + + + + P +++ V D++ Sbjct: 536 DNVVEVEQKVPLLGDIPILGALFRSKSYENNKKNLLVFIRPTILRSAVEAEDMA 589 >gi|292489334|ref|YP_003532221.1| type II secretion system protein OutD [Erwinia amylovora CFBP1430] gi|292898442|ref|YP_003537811.1| type II secretion system protein [Erwinia amylovora ATCC 49946] gi|291198290|emb|CBJ45396.1| type II secretion system protein [Erwinia amylovora ATCC 49946] gi|291554768|emb|CBA22567.1| Type II secretion system protein outD [Erwinia amylovora CFBP1430] gi|312173499|emb|CBX81753.1| Type II secretion system protein outD [Erwinia amylovora ATCC BAA-2158] Length = 645 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 62/400 (15%), Positives = 133/400 (33%), Gaps = 24/400 (6%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 + ++ AD + + G + + ++ Sbjct: 205 ASAPQVAEILNFINGDSKTAGSNKPFAK------AVADTRT---NAVLITGDELARQQLV 255 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 D + +L+ + + V + S+ Sbjct: 256 --DAARNLDEEKDRSSNSRVFYLKHAKAENLVEVLSGVSSNIQDKSESKSASPVAMSKDI 313 Query: 161 VELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V ++T+ + N + ++++N L+I+ QV ++ I EV+ +G Q Sbjct: 314 VVKADTYTNSLIINAPPDVMGDLEEIINRLDIS-RAQVQVEAIIVEVQDADGLALGVQWF 372 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERATAIRTLA 273 + A S + ++ + AL+ + LA Sbjct: 373 NKNGGGTQFPASDAPVSNLIGSTIAEALSKTNGLAAGFYHGNWAGLFTALQTNSQNNILA 432 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIG 329 P++ + A FT G T + +T SV G+ L P + + Sbjct: 433 TPSIVTLDNMEAEFTVGQDVPILTGTQTTNTDGVYNSVDRKSVGIKLKVKPQINKGDSVL 492 Query: 330 LRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + I+ EVS + + ++ R V + SG T+V+ GLL ++ +P+L Sbjct: 493 MEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVLVESGKTVVVGGLLDTTHSNVESSVPVL 552 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +IP++G LFR + + + + + P +++ DL+ Sbjct: 553 GQIPLIGRLFRYTSDKKSKRNLMLFIRPTIIRQQDKFDLT 592 >gi|332995712|gb|AEF05767.1| general secretion pathway protein D [Alteromonas sp. SN2] Length = 680 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 71/330 (21%), Positives = 120/330 (36%), Gaps = 48/330 (14%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 ++I+ E S + G S A E S + S ++V+ L+I Sbjct: 290 SASIQAEEKSGSTNSRGS-SNRDVSIDAHEDSNALV--ITAEPDMMRSLEEVVRQLDIR- 345 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------- 241 QV ++ I EV +G Q + G V+ Sbjct: 346 RAQVQVEAIIVEVFEGDGTTLGVQWVSENGGGTQFSNGVIPVGSLAVALKEAEDDTDTEA 405 Query: 242 --------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 G + + + V+ A+ T LA P Sbjct: 406 YVTDEGAVVRVTTTDEGDYTSLASLLGSANGLIAGIIDNGWGAVVQAVSTDTNSNVLATP 465 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LT + + A F G + T +S+ +V + G+ L TP + + L Sbjct: 466 HLTTMDNEEAYFIVGQEVPIITGTSTGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQL 525 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 I+ EVS + S R+ TTV + GGTIVL GL+ +D+Q+ +PLL Sbjct: 526 LIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGD 583 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420 IPI+G LF+++ ++ + + + P +V+ Sbjct: 584 IPIIGNLFKSTSTSKRKRNLMVFLKPTIVR 613 >gi|326796946|ref|YP_004314766.1| type II and III secretion system protein [Marinomonas mediterranea MMB-1] gi|326547710|gb|ADZ92930.1| type II and III secretion system protein [Marinomonas mediterranea MMB-1] Length = 398 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 5/230 (2%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 A Q+ ++ IA+V R K +G G ++ + +V+ Sbjct: 170 APVRQIEIQAHIAQVHRSAQKTLGVNWQTVIE-DGTRQALTGMVNLNAIGATSSLAVETT 228 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +L ALE +++P + GQSA SG + Y+ T+V Sbjct: 229 RGSSRLSLLLDALETDGFANVISKPKIVTAEGQSARIESGTEIPYQVQH--DDVTTVEFR 286 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 G++L TP V G + L + + + +G +PS + +T VE+ G T+VL Sbjct: 287 QAGLMLEVTPIVKEQGVLRLDL--NIHQDSVGEMVNGVPSLETNRLNTQVEVKDGETLVL 344 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G+ + + + +P+ +P+LGALFR+ E+ E+ + TP L++ Sbjct: 345 GGIFRQEKFENISKVPVFGDLPVLGALFRHRSDKTEKVELLVFITPKLLQ 394 >gi|259910041|ref|YP_002650397.1| putative outer membrane porin HofQ [Erwinia pyrifoliae Ep1/96] gi|224965663|emb|CAX57195.1| outer membrane porin [Erwinia pyrifoliae Ep1/96] Length = 406 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 73/423 (17%), Positives = 158/423 (37%), Gaps = 35/423 (8%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV---- 69 + L S +V + P + A + + +++++ + + + + ++DV Sbjct: 1 MALISPLAAV-QPPLTLAFDDAPVAQVLQALADYQQLNLMVAPGVEGHLSLRLKDVPWRQ 59 Query: 70 ----LVSDPTKADVVVHSPRTMYLFGK---NVGQANVILIGHDGKQMLNLDILIERDIAH 122 ++ + + +F + Q + + +QML L I + Sbjct: 60 ALQLVIKTGKL--TMEQQGNVLMVFPEGWQQEQQRKAAIRREEQEQMLPLFDRILTLVHA 117 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 ++ + R+ ++ L ++ L++T + Sbjct: 118 DAASVNTSLQRERARLMSARGSITLDSRTNSLLLRDTEKALAQT---------------E 162 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKFV 239 ++ L++ +Q+ L I + + L+++G ++G + + Sbjct: 163 HWVHQLDVPL-EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLRVDLATGR 221 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G LD + L ALE +A P L Q+AS G + Y+ + Sbjct: 222 PAGVVGFTLAKLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTEIPYEVST 281 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 ++G+T++ + + + TP V + GRI L I V + ++ + ++ D Sbjct: 282 GNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLTIDKQEID 341 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V L G T+ L G+ + +P L IP+LG LFR+ ++ E+ I TP Sbjct: 342 TQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRRELVIFITPR 401 Query: 418 LVK 420 L++ Sbjct: 402 LIR 404 >gi|332304529|ref|YP_004432380.1| general secretion pathway protein D [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171858|gb|AEE21112.1| general secretion pathway protein D [Glaciecola agarilytica 4H-3-7+YE-5] Length = 690 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 94/503 (18%), Positives = 177/503 (35%), Gaps = 85/503 (16%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL-QVPVDVQDVLVSDPTKADVVVH-- 82 L PI +V + + + ++ ++ ++ V + + D+V Sbjct: 146 LAPILRQLNDQAGGGNVVSHDASNVMMLTGRAAVVNRLVEIIERVDKAGDEEVDIVKLKF 205 Query: 83 -SPRTMY----LFGKNVGQAN--------VILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 S + K+ G+ N V+ M++ DI + I +L + + Sbjct: 206 ASASELVRIIDSINKSTGKTNASGKDAPRVVADDRTNSIMVSGDIKARQRIVNLIERMDQ 265 Query: 130 FIA-DSNIRVEMVSDTV------VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS- 181 + + N RV + + VL G+ +IQ ++ S + ++ + A+ S Sbjct: 266 ELETNGNTRVIFLKYSKAEELVKVLQGVSASIQAEEQGAAKSSSNSNRGDISIEAHEDSN 325 Query: 182 --------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGP 226 + V+ L+I QV ++ I EV +G Q S + Sbjct: 326 ALVITAQPDMMRSLEDVIRQLDIR-RAQVQVEAIIVEVFEGDGTTVGVQWASEDYGAQQF 384 Query: 227 SKSFAADFGGKFVSE-------------------------------------GGDFSVKG 249 S G V+ GG Sbjct: 385 SNGNVVGIGSLAVAAEQASDTTTTTVGFDDDGDPYSFDETTEGDYTALASLLGGVNGFLV 444 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGA 304 + + VL A+ T L+ P LT + + A F G + +++ Sbjct: 445 GAVKDGWGAVLQAVSTDTNSNVLSTPHLTTLDNEEAFFIVGQEVPIITGSTTGSNNTNPF 504 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 SV + G+ L TP + + L I+ EVS + + R+ T V + Sbjct: 505 QSVERQEIGIKLKVTPQINEGNAVQLLIEQEVSSISGATSVDIL--INKREIKTNVIVDD 562 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VA 423 GGTIVL GL+ DD+Q+ +P+L IP +G LF+++ ++ + + + P +++ V Sbjct: 563 GGTIVLGGLIDDDVQESVSKVPILGDIPFIGNLFKSTTTSKSKRNLMVFIRPTIIRDGVT 622 Query: 424 MRDLSRPDDHYSVEDDAKAFFFN 446 D+SR +Y + K Sbjct: 623 ANDISRKKYNYIRAEQLKRQSEG 645 >gi|300718766|ref|YP_003743569.1| secretion and pilus transport protein [Erwinia billingiae Eb661] gi|299064602|emb|CAX61722.1| secretion and pilus transport protein [Erwinia billingiae Eb661] Length = 388 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 62/331 (18%), Positives = 129/331 (38%), Gaps = 10/331 (3%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV----LHGMVRTI 154 +++ +E++ + + + + + ++V R + Sbjct: 57 LLVWPESRALEQQRKEALEQEHQREKAEKEQLLITEVLTLAHADASIVNSSLQSERARLM 116 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + + T + A ++++ + L++ +Q+ L I + + L+++G Sbjct: 117 SERGSVTVDARTNSLLLRDTRPALDATRRWVQALDVPL-EQIELAAHIVTINEESLRELG 175 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRT 271 + T + + F + L D + L ALE+ + Sbjct: 176 VRWGTTSNEQITQALRTSQFTVSLPVADAALTAGFTLARLDGKLLDLELSALEQENKLEI 235 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--G 329 +A P L Q AS G + Y+ S ++G T+V + + + TP V + GRI Sbjct: 236 IASPRLFTSHQQPASIKQGTEIPYEVSSGTSGTTTVEFKEAVLGMEVTPVVQANGRILLK 295 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 L++ V + G+ + ++ T V L G T+ L G+ + + +PL+ Sbjct: 296 LQLTQNVPGRTMRSGEGEYLAIDKQEIQTQVTLKDGQTLALGGIFQRSTASGQRKVPLIG 355 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420 IPILG+LFR ++ E+ I TP L++ Sbjct: 356 DIPILGSLFRYDINEQKRRELVIFITPRLIR 386 >gi|271501355|ref|YP_003334380.1| general secretion pathway protein D [Dickeya dadantii Ech586] gi|270344910|gb|ACZ77675.1| general secretion pathway protein D [Dickeya dadantii Ech586] Length = 713 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 58/308 (18%), Positives = 118/308 (38%), Gaps = 33/308 (10%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 T+++ G T++ + L T R+ ++V+N L+I QV + Sbjct: 351 SSGGRTIMIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 403 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------- 241 + IAE++ +G Q + + + + Sbjct: 404 EAIIAEIQDADGLNLGIQWANNRAGMTQFTNTGIPISTAVIGTDQFRKDGTLTTAYASAL 463 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + R ++ ++ AL + LA P++ + A+F G + T S + Sbjct: 464 GSFNGITAGFYRGNWSMLMTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 523 Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352 T +V G+ L P + + L+I+ EVS ++ + ++ Sbjct: 524 TVGSGNNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSANSSLGVTFN 583 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + V + +G T+V+ GLL + +PLL IP+LG LFR+ + ++ + + Sbjct: 584 TRTVNNAVMVSNGETVVVGGLLDKSTDENNSKVPLLGDIPVLGNLFRSKSQSVKKRNLML 643 Query: 413 AATPFLVK 420 P +++ Sbjct: 644 FLRPTIIR 651 >gi|157162867|ref|YP_001460185.1| outer membrane porin HofQ [Escherichia coli HS] gi|254038556|ref|ZP_04872612.1| transporter HofQ [Escherichia sp. 1_1_43] gi|157068547|gb|ABV07802.1| protein transporter HofQ [Escherichia coli HS] gi|226839062|gb|EEH71085.1| transporter HofQ [Escherichia sp. 1_1_43] gi|323934619|gb|EGB31019.1| type IV pilus secretin PilQ [Escherichia coli E1520] Length = 412 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 80/425 (18%), Positives = 155/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + + + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +I ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L++ V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP+ G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|85860072|ref|YP_462274.1| general secretion pathway protein D [Syntrophus aciditrophicus SB] gi|85723163|gb|ABC78106.1| general secretion pathway protein D [Syntrophus aciditrophicus SB] Length = 601 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 69/345 (20%), Positives = 119/345 (34%), Gaps = 38/345 (11%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 ++++ L L L L V+ D + Sbjct: 234 EKNAIVMHVYPLQNASAEDLAKVLINLQPKETAPGSEKG-QPALSRNVQIQSDKATNSLI 292 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGS 222 Q V ++ I EV +G + ++ + Sbjct: 293 ITASAEDYALLQGLIQKLDS--------SRPMVYIEALILEVNIVKDFNLGTEWRAMHDA 344 Query: 223 SSGPSKSFAADFGGKFVSEG-----------------------GDFSVKGVLDRFSFETV 259 SG + S GG G G G + + Sbjct: 345 GSGGTGSLLFGSGGLGPPAGTYNILPDVTTPATYSSGFTFGILGTGITLGGITFQDIGAM 404 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVV 315 + A++ T I L++P L + + A G Y T +T +S D GV Sbjct: 405 IQAIKSDTDIHILSKPQLLTMDNEEAQIHVGKNVPYATRKETTTTNLDYSSYEYRDVGVS 464 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + S G + ++I EVS+ + +P+ R +TTV + T+V+ G++ Sbjct: 465 LKITPHINSEGFVRMKINQEVSQVT-EDSPTGLPTTNKRAVNTTVTIKDSETVVIGGMIG 523 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 D Q +PLL IP+LG LF++ NRE+T +++ TP +++ Sbjct: 524 DSTQLGTYKVPLLGDIPVLGWLFKSRSSNREKTNLYVFITPRVIR 568 >gi|13475694|ref|NP_107261.1| general secretion proteinD [Mesorhizobium loti MAFF303099] gi|14026450|dbj|BAB53047.1| general secretion protein D [Mesorhizobium loti MAFF303099] Length = 708 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 114/280 (40%), Gaps = 13/280 (4%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 V E +++++ +++ QV L+ IAEV + + Sbjct: 399 APAHATVVADVENNALLIQTTARDYQRIEQILSKVDV-LPTQVMLEAVIAEVTLNDDLKY 457 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G + + S + A G ++S + + L+AL + T + ++ Sbjct: 458 GLRWFFENGGTKVSVTDVAKAAAAATLPGFNWSYAT----DNIQVTLNALSKITDVNVIS 513 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPG 326 PT+ A++ Q A G Q T S SV D GV+L TP + + G Sbjct: 514 APTIMALNNQKAILQVGDQVPILTQQSQDTGNGSAPIINSVQMKDTGVILTVTPRINNAG 573 Query: 327 RIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 R+ L IQ EVS ++ D P+ + RK T V + G ++ L GL++ + + + Sbjct: 574 RVMLDIQQEVSNVTKTDSSDIDSPTIQQRKVQTRVLVNDGESLALGGLIQQNNSVDRSQV 633 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 P+L IPILG F+ TE+ I P +V+ + Sbjct: 634 PILGDIPILGNAFKQKDDTIRRTELIIFIRPHVVRDINEA 673 >gi|117620160|ref|YP_855102.1| general secretion pathway protein D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561567|gb|ABK38515.1| general secretion pathway protein D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 677 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 104/276 (37%), Gaps = 25/276 (9%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + ++V+ L+I QV ++ I E+ +G Q + T Sbjct: 331 TAQPDVMAELEQVVAKLDIR-RAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTDTN 389 Query: 232 ADFGGKFVSE---------GGDFSVKGVLDR-------FSFETVLHALERATAIRTLAEP 275 G ++ G ++ + ++ ++ AL T L+ P Sbjct: 390 LPIGSVAIAAKDYQKNGTTTGLAALAKDFNGMAAGFYKGNWAALVTALSTNTKNDILSTP 449 Query: 276 TLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ + + ASF G + + +S ++ G L TP + + L Sbjct: 450 SIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLL 509 Query: 331 RIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I+ EVS G P++ R V + SG T+VL GL+ + Q+ +PL Sbjct: 510 NIEQEVSSVAQTQAPGTSTLGPTFDTRTIKNAVLVKSGETVVLGGLMDEKTQEKVSKVPL 569 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 L IP+LG LFR++ + + + + P +++ Sbjct: 570 LGDIPVLGYLFRSTSNSTSKRNLMVFIRPTILRDAD 605 >gi|161616525|ref|YP_001590490.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365889|gb|ABX69657.1| hypothetical protein SPAB_04341 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 389 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 129/319 (40%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 Q + +D L + + + +I ++ + + + + Sbjct: 69 HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKR 128 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ + +K ++ +++ QV L I + L+++G + ++ ++ Sbjct: 129 TNRLLLRDNRAVLAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + V G + + L ALE+ + +A P L A Sbjct: 188 GAVGDVTTLSSDLSVAAATSRVGFNIGRISGRLLDLELSALEQKQQLDIIASPRLLASHL 247 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 368 DGKEDERRELVVFITPRLV 386 >gi|39997126|ref|NP_953077.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens PCA] gi|39984016|gb|AAR35404.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens PCA] gi|298506139|gb|ADI84862.1| type IV pilus secretin lipoprotein PilQ [Geobacter sulfurreducens KN400] Length = 894 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 63/338 (18%), Positives = 128/338 (37%), Gaps = 27/338 (7%) Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRF------IADSNIRVEMVSDTVVLHGMVRTIQ 155 + DG + + +A E L+R + + + ++ Sbjct: 563 MQRDGNIVQIRPKSKIQTLADEEQALKRAKERGMELKTEVFDINFAAVGDIVSQFNAVKS 622 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 + + + T + A + + ++ L++ E QV ++ I E + +G Sbjct: 623 ERGTISQDARTNRVIVKDIEPALAEMRILLKNLDLP-EKQVLIEARIVEATSTFTRDLGV 681 Query: 216 QHSITGSSSGP--------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 Q I + SG + A+ F S G + + L Sbjct: 682 QWGIHSNDSGADIIRSVDAGFGGIVTPPPASGFPAATSSGGAVGISFAKMGSLQVDLRLS 741 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 A A ++ ++ P + ++ ++A + G Y+T S+ T + + L TP Sbjct: 742 AAAVAGLVKIVSTPKVVTLNNKAAKISQGQSIPYQTTSAEG--TKTEFVEAALTLEVTPH 799 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + G + ++I+ G P ++A T + + +G T V+ G+ D Sbjct: 800 ITADGSVSMKIKAS----NNSAGTGSPPPINKKEATTELLVKNGETTVIGGIYVDSDTDE 855 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+P L IP+LG LF+++ N+ +TE+ I TP +V Sbjct: 856 DRGVPFLMDIPVLGWLFKSNTKNKTKTELLIFITPKIV 893 >gi|300313469|ref|YP_003777561.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum seropedicae SmR1] gi|300076254|gb|ADJ65653.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 674 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 113/280 (40%), Gaps = 31/280 (11%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPS 227 A ++ +K++ ++IA QV ++ I E + +G + + G++ G S Sbjct: 398 TDTLAALANVRKLIERIDIAAR-QVMIEARIVEADDSFARNLGVKLGLAARTQGAALGNS 456 Query: 228 KSFAADFGGKFVSEGG-----------------------DFSVKGVLDRFSFETVLHALE 264 + + G+ G F++ + L ALE Sbjct: 457 YASVGELSGQTPPAAGTYLREPALGLGAGALAGSAPGSFAFTLFNAAAQRFLNVELSALE 516 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + ++ P L Q+A G + Y+ +GAT+ + L TP + Sbjct: 517 AEGRGKIVSSPRLVTADQQAALIEQGEEIPYQQSI-GSGATATAFKKANLKLEVTPQITP 575 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + L +V++ G + + T V++ GGT+V+ G+ + + Sbjct: 576 DGNVILD--VDVNKDSRGSATPGGLAINTKHIKTKVQVEDGGTVVIGGIYTQTDNEHETR 633 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 +PLL +IP+LGALFR+ R++TE+ I TP +V P Sbjct: 634 VPLLGEIPLLGALFRSRNKVRDKTELLIFLTPRIVAPPRP 673 >gi|77456876|ref|YP_346381.1| type II and III secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77380879|gb|ABA72392.1| putative Flp pilus assembly protein, secretin [Pseudomonas fluorescens Pf0-1] Length = 422 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 130/284 (45%), Gaps = 27/284 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------ 240 QV + EV R LK+ G GS++ + Sbjct: 130 PSQVQTDIRFVEVSRTKLKEAGTSIYGKGSNNFLFGAPGTVPNTGVTPGVVPLLNIDPRI 189 Query: 241 -------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F++ F +++ALE + TLA P+L A+SGQSASF +GG+ Sbjct: 190 AAPSIPLANDMFNIVWGGGSSKFLGIVNALEGSGFAYTLARPSLVALSGQSASFLAGGEV 249 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMP 349 S+++ + S+ ++G+ L TPTV+S RI L++ EVSE + + +P Sbjct: 250 PIPVPSANSNSYSIEYKEFGIRLTLTPTVVSNDRIALKVAPEVSELDYNNGVTIGGTKVP 309 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ +R+ DT++ L G + V++GL+ P L IP+LGA FRNS NREE E Sbjct: 310 AFTIRRTDTSISLADGESFVISGLISTRNASEVNKFPGLGDIPVLGAFFRNSSINREERE 369 Query: 410 IFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFNRVN 449 + + TP LV+P+A+ S P + + + +F N Sbjct: 370 LLMIVTPHLVQPLAVNAPLPSLPGEKLRNYDPNWYRLYFLENGN 413 >gi|330886181|gb|EGH20082.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. mori str. 301020] Length = 428 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 72 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 128 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 129 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 187 Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246 D KQ+G + + ++SG + ++ Sbjct: 188 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 247 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + L A+E+ +++P + ++A G + Y+ SS+GAT+ Sbjct: 248 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 306 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V+ + + L TP + RI + ++ EP +P + + + V + G Sbjct: 307 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 366 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP + Sbjct: 367 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 418 >gi|304438627|ref|ZP_07398566.1| type II and III secretion system protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368465|gb|EFM22151.1| type II and III secretion system protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 428 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 81/435 (18%), Positives = 163/435 (37%), Gaps = 26/435 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 ++R M L V+ + + + + + + ++ + V Sbjct: 1 MKRWIIRAMFFGLLLFAAPVSAASVTVDVTGGDVRSVLLAAARMGNLPLIVDDSVTGTVT 60 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL---IGHDGKQMLNLDILIERDI 120 + + + ++ + R ++L + G + + + +++ + Sbjct: 61 AHLT----GEAEEVLHLIAAARGIHL--EQHGDVWLAVGTEVRDAQRRVHTYVVRYADPE 114 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + + ++ QR + + T + + Sbjct: 115 ELAHAANLSLTGEGKRAIVSKNNKDTSENEDSDSDTPQRVLVDTATNTLLFYGTESEARA 174 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---------SSSGPSKSFA 231 ++++ L+ QV+L+ + V + K++G S + +SG Sbjct: 175 VREIVFALD-TAPRQVSLEARVVAVSKRAAKELGIDWSWSSLPQYPDVSRDASGSWHVNG 233 Query: 232 ADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 + G S G + F + + AL + LA P +T + G+ A Sbjct: 234 RNAGMDGTSAPGIIRFGRGPEGMPYEFYYTAAIRALVSEGKAKMLARPNVTTVQGREALI 293 Query: 288 TSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 G + V++S T+ + + G++L +TP V + G I R+ TEVS PV V+ Sbjct: 294 NIGAEVPVPVVTTSNNVTTTGIEYREAGIILRYTPRVTADGNIVARVHTEVSTPVF-VDD 352 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 ++ R ADTTV L +G T+V+ GL+ D + IP L +P+LGA FR R +R Sbjct: 353 LKAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRTLAKIPFLGDLPLLGAFFRTVRTSR 412 Query: 406 EETEIFIAATPFLVK 420 ETE+ I T ++ Sbjct: 413 NETELMIFLTAHVLD 427 >gi|188532939|ref|YP_001906736.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99] gi|188027981|emb|CAO95838.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99] Length = 646 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 67/366 (18%), Positives = 130/366 (35%), Gaps = 18/366 (4%) Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 AD ++ L G + + +I D + +L+ + + Sbjct: 233 AVADTRT---NSVLLTGDELARQQLI--DAARNLDEEKDHSSNSKVFYLKHAKAENLLEV 287 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAG 192 V + S+ V ++T+ + N + + ++N L+I+ Sbjct: 288 LSGVSGSIQDKAESKTASPVAMSKDIVVKADTYTNSLIINAPPDVMGDLEDIINRLDIS- 346 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----DFSV 247 QV ++ I EV+ +G Q + A S + Sbjct: 347 RAQVQVEAIIVEVQDADGLALGVQWFNQHGGGTQFPAADAPVSHLIGSTVAETLSKTNGL 406 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---- 303 ++ + +AL+ + LA P++ + A FT G T S +T Sbjct: 407 AAGFYHGNWAGLFNALQTNSLNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGV 466 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVEL 362 SV G+ L P + + + I+ EVS + + ++ R V + Sbjct: 467 FNSVDRKSVGIKLKVKPQINEGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVLV 526 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 SG T+V+ GLL ++ +PLL KIP +G LFR + + + + + P +++ Sbjct: 527 QSGKTVVVGGLLDTTHSNVESSVPLLGKIPFIGGLFRYTSDKKSKRNLMLFIRPTIIRQQ 586 Query: 423 AMRDLS 428 DL+ Sbjct: 587 DSFDLT 592 >gi|242237793|ref|YP_002985974.1| outer membrane porin HofQ [Dickeya dadantii Ech703] gi|242129850|gb|ACS84152.1| type IV pilus secretin PilQ [Dickeya dadantii Ech703] Length = 426 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 76/451 (16%), Positives = 157/451 (34%), Gaps = 48/451 (10%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M+ + T++ + + A+ P + + + + +++++ + + Sbjct: 1 MKGMFIYGMTLVMAAQCADTWANAETPVSLAFDDVPVQRVLQALAEHQQLNLVIAPGVEG 60 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 V + ++ V R +G + +G+ ++ Sbjct: 61 NVSLTLERV-------------PWRQALDIILRMGDLTL---EREGRVLMVYPREHL--- 101 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 LR A+ + R + + L +R + ++ A L + + + + Sbjct: 102 ----EMLRLQQAEEDERKQQQQALLNLSVTLRHAESTEVAASL--QSQRGTLLTERGSVT 155 Query: 181 SKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGS 222 K N L + QV L I + + LK +G + Sbjct: 156 VDKRTNTLIVRDVSSALEQIRSWLDVLDKPLAQVQLAAHIVTISSEHLKALGVNWGLDAG 215 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + +F E + L+ + L ALE+ + +A P L Sbjct: 216 DATKQALRMNNFNINLPVETPTVNAGFHLARLNGRLLDLELMALEQEDEVEIIASPRLFT 275 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 Q+AS G + Y+ S ++G+TS+ + + + TP +L G I L + + P Sbjct: 276 AHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPRILQGGFITLNLLISQNMP 335 Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 I G+M + ++ T V + G TIVL G+ + + + +P L +P +G L Sbjct: 336 GRSIKQGEGEMLAIDKQEIQTQVTVKDGETIVLGGIFQQQKNRTERKVPGLGALPGIGRL 395 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 F +S E+ I TP L++ Sbjct: 396 FSSSDRQNTRRELVIFITPTLIQASLPTKQP 426 >gi|320327874|gb|EFW83879.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 775 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G +++ S R + + + L+ QV ++ I EV Sbjct: 458 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 516 Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G Q S T + + G + + + + L Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314 ALE + L+ P+L ++ Q A G S +T ++ V GV Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 636 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 +L P + G + + IQ +VS +A P R T V SG T++L Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAKSGQTVLLG 696 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + + Sbjct: 697 GLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 754 Query: 432 DHYSV 436 D Y Sbjct: 755 DDYRQ 759 >gi|191167908|ref|ZP_03029712.1| protein transporter HofQ [Escherichia coli B7A] gi|190902081|gb|EDV61826.1| protein transporter HofQ [Escherichia coli B7A] Length = 412 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 81/425 (19%), Positives = 153/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + + + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +I ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G + + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGVVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|322830997|ref|YP_004211024.1| type IV pilus secretin PilQ [Rahnella sp. Y9602] gi|321166198|gb|ADW71897.1| type IV pilus secretin PilQ [Rahnella sp. Y9602] Length = 420 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 75/358 (20%), Positives = 142/358 (39%), Gaps = 33/358 (9%) Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV----------EMVSDT 144 GQ +V L +Q L++ + + + L+ + + + +V + + Sbjct: 60 GQMSVKLKDVPWQQALDIILQMNHLTSQLQGNVLLVSPEEDPQVVQQRIKDAADQQALQS 119 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---------- 194 ++ V + LS S +Q N+S+ N L + Sbjct: 120 PLISLTVPLQYADAKETALSLNAQKGSLLSQKGNASADTRTNTLLLRDTQAALDVVAPWV 179 Query: 195 --------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 QV L I + + L+++G + TG +F E F+ Sbjct: 180 KEMDLPLQQVQLAAHIVTMNSESLRELGVRWGFTGEEPITKAVRMNNFSMGMPVENPIFT 239 Query: 247 VKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + + L ALE+ + +A P L Q+AS G + Y+ S ++G Sbjct: 240 AGFNLAHISGRILDLELTALEQEDKVDIIASPRLLTAHMQTASIKQGTEIPYQVSSGASG 299 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVE 361 +TS+ + + + P + GRI L +Q + P I + G+ + ++ T V Sbjct: 300 STSIEFKEAVLGMEVMPKIQRDGRIQLALQISQNMPGRSIKQSEGEALAIDKQEIKTQVT 359 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G TIVL G+ + Q+ +P+L IP++G+LF++ N + E+ I TP L+ Sbjct: 360 VKNGETIVLGGIFQRKNQKTDTKVPVLGDIPVVGSLFKHQYTNEQRRELVIFITPTLI 417 >gi|71733584|ref|YP_275230.1| general secretion pathway protein GspD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554137|gb|AAZ33348.1| general secretion pathway protein GspD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 759 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G +++ S R + + + L+ QV ++ I EV Sbjct: 442 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 500 Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G Q S T + + G + + + + L Sbjct: 501 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 560 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314 ALE + L+ P+L ++ Q A G S +T ++ V GV Sbjct: 561 RALETNGRTQILSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 620 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 +L P + G + + IQ +VS +A P R T V SG T++L Sbjct: 621 ILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSGQTVLLG 680 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + + Sbjct: 681 GLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 738 Query: 432 DHYSV 436 D Y Sbjct: 739 DDYRQ 743 >gi|302184967|ref|ZP_07261640.1| general secretion pathway protein D [Pseudomonas syringae pv. syringae 642] Length = 775 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 107/305 (35%), Gaps = 20/305 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G +++ S R + + + L+ QV ++ I EV+ Sbjct: 458 GNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVQLT 516 Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G Q S T + + G + + + + L Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGV 314 ALE + L+ P+L ++ Q A G ++ T +SV GV Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVEYVQTGV 636 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLA 371 +L P + G + + IQ +VS P R T V SG T++L Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTTSGTNDANGNPRISTRSVATQVAAQSGQTVLLG 696 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + + Sbjct: 697 GLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 754 Query: 432 DHYSV 436 D Y Sbjct: 755 DDYRQ 759 >gi|85712761|ref|ZP_01043805.1| Type II secretory pathway [Idiomarina baltica OS145] gi|85693401|gb|EAQ31355.1| Type II secretory pathway [Idiomarina baltica OS145] Length = 560 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 62/276 (22%), Positives = 105/276 (38%), Gaps = 21/276 (7%) Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + L + + ++ L + QV L+ I EV Q G + + S Sbjct: 258 QAGLVSVTAQPSKLRAVGQFLDNLQSRLQRQVILEARIVEVTLGDQYQQGIRWNELNMSG 317 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 F + D + F L L+ +++ L+ P +TA + Q Sbjct: 318 RFDFGFNGSVPNDIAAATADGVFGLTFNSNRFTGFLELLQTQGSVQVLSNPRVTASNNQK 377 Query: 285 ASFTSGGQHLYKTVSSSTGATSVT------------THDYGVVLHFTPTVLSPGRIGLRI 332 A G Y T +S T+VT G+ L TP + G + L + Sbjct: 378 AVIKIGEDEYYVTDVTSQTNTTVTQDALTSSNVDLTPFFSGISLDVTPQISDDGEVTLHV 437 Query: 333 QTEVSE-------PVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 V E IG +P +R++DT V SG +VL GL+++ + E Sbjct: 438 HPSVVETKEQEKVITIGDETLRLPLARSNIRESDTIVRARSGEIVVLGGLMQNSTSENVE 497 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL +P++G LF+N + + E+ I P ++ Sbjct: 498 KVPLLGDLPLVGNLFKNKSNDASKKELVILIKPTVI 533 >gi|167626227|ref|YP_001676727.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596228|gb|ABZ86226.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 582 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 9/244 (3%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVS 240 V+N +++ DQV ++ I EV R ++GF + S K+F V Sbjct: 335 NVINEIDVPN-DQVLIEARIVEVTRTSGLELGFNYTVSHPSGVDVGLKTFGTASESDTVV 393 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + S E + ALE + +A P L + ++A G Y+ + Sbjct: 394 ASTAKLAYTLAGGLSLEMEIRALENESLANQVASPHLVVANNETAFIKDGQDVPYQQA-T 452 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGL-----RIQTEVSEPVIGVNAGDMPSYRVRK 355 ++GA SV + + L TP + G I + + S P R+ Sbjct: 453 ASGAASVAFQEAVLELQVTPQIAPDGNIVMEVLVTKNSVGASSGKTSTGEDLPPIIDKRE 512 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V + G T+V+ G+ + + IP L IP LG LF N+ ++E+ I T Sbjct: 513 VTTKVMVKDGETVVIGGIYSKKQIETRNKIPFLGDIPYLGYLFSNTVIGDTDSELLIFIT 572 Query: 416 PFLV 419 P ++ Sbjct: 573 PKII 576 >gi|332143347|ref|YP_004429085.1| general secretion pathway protein D [Alteromonas macleodii str. 'Deep ecotype'] gi|327553369|gb|AEB00088.1| general secretion pathway protein D [Alteromonas macleodii str. 'Deep ecotype'] Length = 681 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 117/330 (35%), Gaps = 47/330 (14%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 ++I+ E + S A E S + S ++V+ L+I Sbjct: 290 SASIQAEEQGSGATSRRASSNREISIDAHEDSNAIV--ITAEPDMMRSLEEVVRQLDIR- 346 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------- 241 QV ++ I EV +G Q + G V+ Sbjct: 347 RAQVQVEAIIVEVFEGDGNTLGVQWVSEEGGGTQFNNGVIGVGSLAVALRQAEDRETTQT 406 Query: 242 --------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 GG + + + V+ A+ T LA P Sbjct: 407 NITANGEVVETTDTIEGDFTALASLLGGANGLIAGVIENGWGAVVQAVSTDTNSNILATP 466 Query: 276 TLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LT + + A F G + ++S +V + G+ L TP + + L Sbjct: 467 HLTTMDNEEAFFIVGQEVPIITGTTTGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQL 526 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 I+ EVS + S R+ TTV + GGTIVL GL+ +D+Q+ +PLL Sbjct: 527 LIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGD 584 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+LG LF+ + ++ + + + P +V+ Sbjct: 585 IPVLGHLFKTTSTSKRKRNLMVFLKPTIVR 614 >gi|82545746|ref|YP_409693.1| outer membrane porin HofQ [Shigella boydii Sb227] gi|81247157|gb|ABB67865.1| putative transport portein [Shigella boydii Sb227] Length = 412 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 81/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + + + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +I ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|313291988|gb|ADR51186.1| general secretion pathway protein D [Aeromonas veronii] Length = 679 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 97/275 (35%), Gaps = 24/275 (8%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S ++V+ L+I QV ++ I E++ +G Q + Sbjct: 328 TAQPDVMSELEQVVAKLDIR-RAQVLVEAIIVEMQDGDGLSLGVQWGNANGGGTQFTNSG 386 Query: 232 ADFGGKFVSEGG---------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G + + + + AL T L+ P+ Sbjct: 387 LPLGSAIAAGKDYQNGKTDTAAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPS 446 Query: 277 LTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + + ASF G + + +S ++ G L TP + + L Sbjct: 447 IVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLN 506 Query: 332 IQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 I+ EVS G P++ R V + SG T+VL GL+ + ++ +PLL Sbjct: 507 IEQEVSSVAQTQATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLL 566 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 IP+LG LFR++ + + + P +++ Sbjct: 567 GDIPVLGYLFRSTSNTTSKRNLMVFIRPTILRDAD 601 >gi|193061725|ref|ZP_03042822.1| protein transporter HofQ [Escherichia coli E22] gi|193068780|ref|ZP_03049740.1| protein transporter HofQ [Escherichia coli E110019] gi|194427057|ref|ZP_03059609.1| protein transporter HofQ [Escherichia coli B171] gi|194435813|ref|ZP_03067916.1| protein transporter HofQ [Escherichia coli 101-1] gi|253771782|ref|YP_003034613.1| outer membrane porin HofQ [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163319|ref|YP_003046427.1| outer membrane porin HofQ [Escherichia coli B str. REL606] gi|256020735|ref|ZP_05434600.1| outer membrane porin HofQ [Shigella sp. D9] gi|260846175|ref|YP_003223953.1| putative fimbrial transporter HofQ [Escherichia coli O103:H2 str. 12009] gi|260857498|ref|YP_003231389.1| putative fimbrial transporter HofQ [Escherichia coli O26:H11 str. 11368] gi|260870117|ref|YP_003236519.1| putative fimbrial transporter HofQ [Escherichia coli O111:H- str. 11128] gi|332281935|ref|ZP_08394348.1| outer membrane porin HofQ [Shigella sp. D9] gi|192932515|gb|EDV85112.1| protein transporter HofQ [Escherichia coli E22] gi|192957856|gb|EDV88299.1| protein transporter HofQ [Escherichia coli E110019] gi|194415018|gb|EDX31288.1| protein transporter HofQ [Escherichia coli B171] gi|194425356|gb|EDX41340.1| protein transporter HofQ [Escherichia coli 101-1] gi|242378917|emb|CAQ33712.1| protein involved in utilization of DNA as a carbon source [Escherichia coli BL21(DE3)] gi|253322826|gb|ACT27428.1| type IV pilus secretin PilQ [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975220|gb|ACT40891.1| predicted fimbrial transporter [Escherichia coli B str. REL606] gi|253979376|gb|ACT45046.1| predicted fimbrial transporter [Escherichia coli BL21(DE3)] gi|257756147|dbj|BAI27649.1| predicted fimbrial transporter HofQ [Escherichia coli O26:H11 str. 11368] gi|257761322|dbj|BAI32819.1| predicted fimbrial transporter HofQ [Escherichia coli O103:H2 str. 12009] gi|257766473|dbj|BAI37968.1| predicted fimbrial transporter HofQ [Escherichia coli O111:H- str. 11128] gi|323376744|gb|ADX49012.1| type IV pilus secretin PilQ [Escherichia coli KO11] gi|323959609|gb|EGB55261.1| type IV pilus secretin PilQ [Escherichia coli H489] gi|323969989|gb|EGB65264.1| type IV pilus secretin PilQ [Escherichia coli TA007] gi|332104287|gb|EGJ07633.1| outer membrane porin HofQ [Shigella sp. D9] Length = 412 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 81/425 (19%), Positives = 155/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S + N+ + I ++ + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAGLITRQEDNILSVHSIAWQNNN--------IARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +I ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|218550647|ref|YP_002384438.1| outer membrane porin HofQ [Escherichia fergusonii ATCC 35469] gi|218358188|emb|CAQ90835.1| fimbrial transporter [Escherichia fergusonii ATCC 35469] Length = 426 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 83/429 (19%), Positives = 154/429 (35%), Gaps = 31/429 (7%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ ++ L + P K A ++ + ++ + I+ P Sbjct: 12 EKKMKQWIAAILMMALPVA---QAAKPAKVTLVVDDAPVAQVLQALA-EQERQNIVVSPD 67 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQA----NVILIGHDGKQMLNLDIL 115 V + VV S L + G + + + + Sbjct: 68 VSGLVSLHLIDVPWKQALQTVVKSAG---LVSRQEGNILHIHSAAWQNENAARQEAEQVR 124 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + + AD+ + + G + + R + N+ Sbjct: 125 RLASLPVEHRAIALQYADAAELAKAGGKLLSAKGSMTVDTRTNRLL---------LRDNK 175 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 A ++ + ++ +++ QV L I + L+++G + + + Sbjct: 176 TALAALEHWISEMDVP-VGQVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTTLS 234 Query: 236 GKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 V G ++ + L ALE+ + +A P L A Q AS G + Sbjct: 235 SDLAVATATTQVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSE 294 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPS 350 Y+ S +GATSV + + + TPTVL GRI L+ I V V+ + G++ + Sbjct: 295 IPYQVSSGESGATSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGEVLT 354 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ +T VE+ SG T+ L G+ + K+ IPLL IP LG LF + E E+ Sbjct: 355 IDKQEIETQVEVKSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENERREL 414 Query: 411 FIAATPFLV 419 + TP LV Sbjct: 415 VVFITPRLV 423 >gi|83749638|ref|ZP_00946621.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551] gi|83723699|gb|EAP70894.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551] Length = 401 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 82/333 (24%), Positives = 150/333 (45%), Gaps = 32/333 (9%) Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83 A +AA + + ++++ + K ++Q+P V++ V +P ++ S Sbjct: 74 AATAEASRESAAKGPNCTGAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVS 133 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142 P+T+YL G+ VG N+I+ G G +D+ + D L+ TLR + + N++V + Sbjct: 134 PQTLYLLGQEVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQSTLRTLMPGAKNVQVSAAA 192 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYANSS 180 D++VL G V +Q+ ++++ F+ G A Sbjct: 193 DSLVLGGSVSDSVQAQKVLDIANAFVMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPR 252 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 S +++N++ + QV L+V +AEV + ++ Q+G ++ +G S+ F+S Sbjct: 253 SPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNV----NGAFGSWTFGALANFLS 308 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 D + + L A + ++ LAEP+L AISGQ ASF +GG+ Sbjct: 309 GSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVSQG 368 Query: 301 STG----ATSVTTHDYGVVLHFTPTVLSPGRIG 329 + + +GV L FTPTV+ GRI Sbjct: 369 AATNGVANIILXEETFGVGLRFTPTVMEKGRIT 401 >gi|307555474|gb|ADN48249.1| protein transport protein HofQ precursor [Escherichia coli ABU 83972] Length = 377 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + NI ++ + + + Sbjct: 57 HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 116 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + Sbjct: 117 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 175 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + G ++ + L ALE+ + +A P L A Sbjct: 176 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 235 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 236 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 295 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 296 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 355 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 356 DGKEDERRELVVFITPRLV 374 >gi|330830590|ref|YP_004393542.1| general secretion pathway protein D [Aeromonas veronii B565] gi|328805726|gb|AEB50925.1| General secretion pathway protein D [Aeromonas veronii B565] Length = 679 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 97/275 (35%), Gaps = 24/275 (8%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S ++V+ L+I QV ++ I E++ +G Q + Sbjct: 328 TAQPDVMSELEQVVAKLDIR-RAQVLVEAIIVEMQDGDGLSLGVQWGNANGGGTQFTNSG 386 Query: 232 ADFGGKFVSEGG---------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G + + + + AL T L+ P+ Sbjct: 387 LPLGSAIAAGKDYQNGKTDTAAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPS 446 Query: 277 LTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + + ASF G + + +S ++ G L TP + + L Sbjct: 447 IVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLN 506 Query: 332 IQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 I+ EVS G P++ R V + SG T+VL GL+ + ++ +PLL Sbjct: 507 IEQEVSSVAQTQATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLL 566 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 IP+LG LFR++ + + + P +++ Sbjct: 567 GDIPVLGYLFRSTSNTTSKRNLMVFIRPTILRDAD 601 >gi|224585282|ref|YP_002639081.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469810|gb|ACN47640.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 379 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 132/319 (41%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 Q + ++D L + + + +I ++ + + + + Sbjct: 59 HSQAWQKEHSAQQDAERLRLQANLPLENRSINLQYADAGELAKAGEKLLSAKGTIMVDKR 118 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A + +K + +++ QV L I + L+++G + ++ ++ Sbjct: 119 TNRLLLRDNRAALAELEKWGSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 177 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + A V G ++ + L ALE+ + +A P L A Sbjct: 178 GAVGDVATLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 237 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 238 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 297 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ Sbjct: 298 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 357 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 358 DGKEDERRELVVFITPRLV 376 >gi|238758913|ref|ZP_04620085.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236] gi|238702870|gb|EEP95415.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236] Length = 641 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 110/288 (38%), Gaps = 16/288 (5%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 TI+ ++ L T + +V++ L++ QV ++ I E + Sbjct: 305 TIRAHEQTNALVITAAPGLMKEL------SQVIDKLDVR-RAQVLVEAIIVETQNGEGLN 357 Query: 213 IGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 +G Q + G + S A + + + +++ + AL + Sbjct: 358 LGIQWANKFLGGVNFIKNSGATASSSEKGIPMMIAGLTAGFYKGNWDGLFSALATNSNNN 417 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPG 326 LA P++ + A F G + T + +T S++ GV+L P + Sbjct: 418 ILATPSIVTLDNMEAEFNVGQEVPVLTSTQTTATDKVYNSISRQPVGVMLKVKPQINQGD 477 Query: 327 RIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + L I+ EVS + + R + V + SG T+V+ GLL ++ Sbjct: 478 SVLLEIRQEVSSVADSTDTNTNNLGSVFNKRVVNNAVLVRSGETVVVGGLLDKKTNRIIN 537 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 +P L IP++G LFR ++ E + + + P +++ V L Sbjct: 538 KVPFLGDIPLIGGLFRQTKEKVERSNLILFIKPTILREVDDYSLVTSG 585 >gi|313673420|ref|YP_004051531.1| type ii and iii secretion system protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940176|gb|ADR19368.1| type II and III secretion system protein [Calditerrivibrio nitroreducens DSM 19672] Length = 786 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 22/286 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 V+ G V + + + S +F+ ++ A K V+ ++ QVT++ + EV Sbjct: 507 VVKG-VLSPRGKVQVESKSNSFVVTDTKDSIAKV--KNVLKEVDKPTP-QVTIEARVVEV 562 Query: 206 RRDILKQIGFQHSITG-------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 G + +G + + + + ++ + + Sbjct: 563 SDSNDLAYGIKWGANTKINRTSINFPNSIGINGDAGGYMVNLPIGAPTGALALTLGNISN 622 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F+ + + A+E +T++ P +T + Q A SGG+ + S T T D Sbjct: 623 TFNIDMAISAMESRNKAKTISSPKITTLDNQEAEIKSGGKAIIVP---SGDNTQSQTIDV 679 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G+ L P + + I + I+ E S G +G +KA T V L +G T V+ G Sbjct: 680 GIKLKVKPHITANNMIFMEIEVEKSSL--GAVSGTNAETLEKKAKTQVLLANGETTVIGG 737 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + +D+ ++K +P LSKIP+LG LFRN+ R + E+ + TP + Sbjct: 738 IYEDEQNEIKNEVPGLSKIPLLGWLFRNNIERRAKKELLVFITPRI 783 >gi|284923383|emb|CBG36477.1| protein transport protein [Escherichia coli 042] Length = 386 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + NI ++ + + + Sbjct: 66 HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|66046370|ref|YP_236211.1| type II and III secretion system protein:NolW-like [Pseudomonas syringae pv. syringae B728a] gi|63257077|gb|AAY38173.1| type II and III secretion system protein:NolW-like [Pseudomonas syringae pv. syringae B728a] Length = 776 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 18/260 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244 QV ++ I EV+ +G Q S T + + G + Sbjct: 503 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 562 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298 + + + L ALE + L+ P+L ++ Q A G Sbjct: 563 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 622 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKA 356 ++ T +SV GV+L P + G + + IQ +VS+ +A P R Sbjct: 623 NTGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADSSGTTDANGNPRISTRSV 682 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V SG T++L GL+K D + +P L +IP L LF N+ +++ TE+ + TP Sbjct: 683 ATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITP 742 Query: 417 FLVKPVAMRDLSRPDDHYSV 436 ++ + + D Y Sbjct: 743 RVI--TSSSQARQVTDDYRQ 760 >gi|260912709|ref|ZP_05919195.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325] gi|260633087|gb|EEX51252.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325] Length = 431 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKF 238 +Q+ ++ I + + LK++G + + S S+ +F Sbjct: 185 EQIAIEARIVTISDESLKELGVRWGLLNPTELSHRVAGSLDANGFSQISEQLNVNFATSI 244 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 245 TPAGSLALQLAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVT 304 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 S SV + + L TP + +I L + + P V +G++ S ++ Sbjct: 305 SGKNETQSVEFREAVLGLDVTPHISKDNQILLDLVVSQNSPGARVAYGSGEIVSIDKQEI 364 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D + + + +P+L IP++ LFR ++ E+ I TP Sbjct: 365 NTQVVAKDGETIVLGGVFHDSMTKGVDKVPVLGDIPMIKHLFRKQNERHQKRELVIFVTP 424 Query: 417 FLVK 420 ++K Sbjct: 425 RILK 428 >gi|15603090|ref|NP_246162.1| ComE [Pasteurella multocida subsp. multocida str. Pm70] gi|12721580|gb|AAK03309.1| ComE [Pasteurella multocida subsp. multocida str. Pm70] Length = 444 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 17/249 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGKF 238 +Q+ ++ I + + L+++G + + S +F Sbjct: 181 EQIAIEARIVTMTDESLQELGVRWGLFQATEQAHTIAGSLAANGFSNIENQLNVNFSTNS 240 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER I +A P L + +SAS G + Y Sbjct: 241 APVGSIALQLAKINGRLLDLELTALEREKHIEIIASPRLLTTNKKSASIKQGTEIPYVMK 300 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 + SV + + L TP + I L + + V + G++ S ++ Sbjct: 301 RGKDKSESVEFREAVLGLDVTPHISKDNTILLDLLITQNTLGAPVVYDKGEIVSIDKQEI 360 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D + + +PLL +P+L +F ++ E+ I TP Sbjct: 361 NTQVVAQDGETIVLGGVFHDTMTKGVNKVPLLGDLPLLKHVFSQKTERHQKRELVIFVTP 420 Query: 417 FLVKPVAMR 425 ++KP Sbjct: 421 HIIKPSQGS 429 >gi|307545360|ref|YP_003897839.1| general secretion pathway protein D [Halomonas elongata DSM 2581] gi|307217384|emb|CBV42654.1| general secretion pathway protein D [Halomonas elongata DSM 2581] Length = 749 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 14/250 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I EVR G Q + + S A+ G + G G Sbjct: 480 PRQVQIETRILEVRLTGALNQGVQWYLGQLAGNASNPSVANASGSQGALGAGGVSLGGSS 539 Query: 253 ------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSS 301 + + L AL+ + L+ P+L ++ Q A G + Sbjct: 540 MFYSFVGDNLQVALRALQTRGLTQVLSAPSLVVLNNQQAQIQVGDNIPVNQTTVNTADAD 599 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTT 359 T +SV GV+L P + G + + IQ +VS+ + P R T Sbjct: 600 TTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADDNAAGSTASNPRISTRAVSTQ 659 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + SG T++L GL++ + + + +P LS IP LG LF + +R+ TE+ + TP +V Sbjct: 660 VAVQSGQTVLLGGLIQQNNAESETRVPGLSSIPGLGRLFGSEARDRDRTELIVLITPKVV 719 Query: 420 -KPVAMRDLS 428 PV R+++ Sbjct: 720 NNPVQAREIT 729 >gi|307131443|ref|YP_003883459.1| general secretion pathway protein D [Dickeya dadantii 3937] gi|306528972|gb|ADM98902.1| General secretion pathway protein D [Dickeya dadantii 3937] Length = 696 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 16/262 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + A + ++ L++ +QV ++ + EV++ +G + G S Sbjct: 384 SASPAAMQQAVSIIQQLDVR-HEQVLVEAIVVEVQQAEGLNLGIAWG--NKNYGGSNFNG 440 Query: 232 ADFGGKFVSEG-------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + G F G + S+ ++ +ALE LA P++ + Sbjct: 441 VNVGNGFNQANPLVDALKGTEGLIAGFYHGSWGSLFNALESNKRNNILATPSVVTLDNHR 500 Query: 285 ASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 A F G T S +T +V G+ P + G I L I E+S Sbjct: 501 AEFNVGQDVPILTGSQTTNNDNIFNTVQRRTIGIKFSILPRINQSGTILLNISQEISSLS 560 Query: 341 IGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + +R + V++ T+V+ GLL D+ ++ +PLL IP LG LF Sbjct: 561 DTSQVNSNLGSVFNIRTVNNVVQVQDDETVVIGGLLDDEKKETANKVPLLGDIPWLGNLF 620 Query: 399 RNSRFNREETEIFIAATPFLVK 420 R + N ++ + + P +++ Sbjct: 621 RYTSQNNDKRNLMLFIRPRIIR 642 >gi|320197345|gb|EFW71960.1| Type IV pilus biogenesis protein PilQ [Escherichia coli WV_060327] Length = 386 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + NI ++ + + + Sbjct: 66 HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKAALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTALGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|330938634|gb|EGH42200.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 554 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 108/257 (42%), Gaps = 23/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------SK 228 ++++ L+I QV ++ I E D KQ+G + + ++SG + Sbjct: 290 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAG 348 Query: 229 SFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + + + V + + L A+E+ +++P + Sbjct: 349 NTSGNLTSNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 408 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP Sbjct: 409 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 467 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR Sbjct: 468 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 527 Query: 402 RFNREETEIFIAATPFL 418 + ++E+ + TP + Sbjct: 528 VVSESKSELLVFLTPRI 544 >gi|289648905|ref|ZP_06480248.1| general secretion pathway protein D [Pseudomonas syringae pv. aesculi str. 2250] gi|330987884|gb|EGH85987.1| general secretion pathway protein D [Pseudomonas syringae pv. lachrymans str. M301315] Length = 775 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G +++ S R + + + L+ QV ++ I EV Sbjct: 458 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 516 Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G Q S T + + G + + + + L Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314 ALE + L+ P+L ++ Q A G S +T ++ V GV Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 636 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 +L P + G + + IQ +VS +A P R T V SG T++L Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSGQTVLLG 696 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ + + Sbjct: 697 GLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQVT 754 Query: 432 DHYSV 436 D Y Sbjct: 755 DDYRQ 759 >gi|320323732|gb|EFW79816.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. B076] Length = 775 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G +++ S R + + + L+ QV ++ I EV Sbjct: 458 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 516 Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G Q S T + + G + + + + L Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314 ALE + L+ P+L ++ Q A G S +T ++ V GV Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 636 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 +L P + G + + IQ +VS +A P R T V SG T++L Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSGQTVLLG 696 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + + Sbjct: 697 GLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 754 Query: 432 DHYSV 436 D Y Sbjct: 755 DDYRQ 759 >gi|218691667|ref|YP_002399879.1| outer membrane porin HofQ [Escherichia coli ED1a] gi|218429231|emb|CAR10041.1| fimbrial transporter [Escherichia coli ED1a] Length = 412 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 79/413 (19%), Positives = 156/413 (37%), Gaps = 21/413 (5%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISI--GLNKVIILQVPVDVQDVLVSDPTK 76 + + +P ++ A + + ++ + + + K+ ++ P V + Sbjct: 6 AALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQVLAEQEKLNLVVSPDVSGTVSLHLTDV 65 Query: 77 -----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 VV S L + G + + D + ++ + Sbjct: 66 PWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQEAEQTRAQANLPL 117 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + NI ++ + + + T N+ A S+ ++ ++ +++ Sbjct: 118 ENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSTLEQWVSQMDLP 177 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK--- 248 QV L I + L+++G + ++ + G + Sbjct: 178 -VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATATTHIGFNI 236 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G ++ + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 237 GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVE 296 Query: 309 THDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + + + TPTVL GRI L+ I V V+ G++ + ++ +T VE+ SG Sbjct: 297 FKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGE 356 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T+ L G+ + ++ +PLL IP G LF + E E+ + TP LV Sbjct: 357 TLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFHHDGKEDERRELVVFITPRLV 409 >gi|330444859|ref|ZP_08308514.1| general secretion pathway protein D [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489169|dbj|GAA03011.1| general secretion pathway protein D [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 677 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 59/316 (18%), Positives = 119/316 (37%), Gaps = 48/316 (15%) Query: 151 VRTIQDSQRAVELS--ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 ++ + + ET + + +++ L+I QV ++ I EV+ Sbjct: 303 AKSGSSKDEVMISAHPETNALIISAPSDVMNRLESIISQLDIR-RAQVHIEAMIVEVQEG 361 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------------------------- 241 G Q + A GG ++ Sbjct: 362 AGVDFGVQWGSQDGGVIQFGNSGAPIGGLLSAQEAAKDKTTTQNRTDPNTGAQLPPIVTT 421 Query: 242 ------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 GG + + ++ A++ + L+ P +T + Q A+ + Sbjct: 422 ESGDLAPMAAFLGGVKGAAAAISMGDWTALVTAVQANRNVNVLSTPNITVLDNQEANLSV 481 Query: 290 GGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 G + T SS+ T+V D G+ L TP + + ++I+ VS+ Sbjct: 482 GQEVPVTTGSSTGSNNDNPFTTVERKDVGIQLKVTPQINEGDSVQMKIEQVVSQVADANG 541 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 A D+ + R+ T+V + G I L GL+++ + ++ +P+L IP+LGALFR++ Sbjct: 542 AVDI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVPILGDIPVLGALFRSTNDQ 600 Query: 405 REETEIFIAATPFLVK 420 E+T + + P +++ Sbjct: 601 TEKTNLMVFIRPTILR 616 >gi|291614284|ref|YP_003524441.1| type II and III secretion system protein [Sideroxydans lithotrophicus ES-1] gi|291584396|gb|ADE12054.1| type II and III secretion system protein [Sideroxydans lithotrophicus ES-1] Length = 851 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 79/480 (16%), Positives = 163/480 (33%), Gaps = 81/480 (16%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P + A + + + + I+I L++ + + + V D + AD Sbjct: 184 PVTLQFRDANLKMVFEALSRSSGINILLDRDMRNDLK---ASIFVKDASVADALDLILMQ 240 Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 V + T++++ + ++ L D ++ ++ + Sbjct: 241 NQLEKKVLNDSTVFIYPNTPAKIK-----EYQDLVIRTFQLTNADAKQMQTMIKTMLKTK 295 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 +I V ++++++ AV+++E ++ N+ Sbjct: 296 DIYVNEKNNSLIIRDTP-------EAVKMAEKLIASQDINEPE----------------- 331 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--------------SSGPSKSFAADFGGKFVS 240 V L+V + EV L Q+G + +SG + Sbjct: 332 -VMLEVEVLEVLHSKLTQLGVKWPNQLGLSVNATPATSTATTTSGGAVVTTNTPAVPLTV 390 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G ++ L + LA P + + A G + T S Sbjct: 391 NGLRHINGDAINVTPLSMTLDLRKELGDSNLLASPRIRVKQHEKAKIMIGDRVPVITNSV 450 Query: 301 STGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMP 349 + AT SV D G+ L P + G + ++ EVS + + Sbjct: 451 TPVATGTPVVTGSVQYLDVGLKLEVEPDIHMDGEVAIKTYLEVSTIANQVTNAASGSVAY 510 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R +T + L G T VLAGL+ D+ ++ +P L +PILG LF ++ ++ +TE Sbjct: 511 QIGTRNVNTVLRLKDGETQVLAGLINDEDRKSSASVPGLGDLPILGHLFSSNGDDKRKTE 570 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 I ++ TP +++ + D+ D F+ + + + + G G+ Sbjct: 571 IILSITPHIIRNIHRPDV-----------DLAEFWSGTEDTLRNRPLSLQPVGMVNTGSA 619 >gi|330981434|gb|EGH79537.1| general secretion pathway protein D [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 589 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 64/305 (20%), Positives = 109/305 (35%), Gaps = 20/305 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G +++ S R + + + L+ QV ++ I EV+ Sbjct: 272 GNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVQLT 330 Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G Q S T + + G + + + + L Sbjct: 331 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 390 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGV 314 ALE + L+ P+L ++ Q A G ++ T +SV GV Sbjct: 391 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVEYVQTGV 450 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLA 371 +L P + G + + IQ +VS N A P R T V SG T++L Sbjct: 451 ILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGNPRISTRSVATQVAAQSGQTVLLG 510 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + + Sbjct: 511 GLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 568 Query: 432 DHYSV 436 D Y Sbjct: 569 DDYRQ 573 >gi|109896562|ref|YP_659817.1| general secretion pathway protein D [Pseudoalteromonas atlantica T6c] gi|109698843|gb|ABG38763.1| general secretion pathway protein D [Pseudoalteromonas atlantica T6c] Length = 689 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 93/502 (18%), Positives = 176/502 (35%), Gaps = 84/502 (16%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL-QVPVDVQDVLVSDPTKADVVVH-- 82 L PI +V + + + ++ ++ ++ V + + ++V Sbjct: 146 LAPILRQLNDQAGGGNVVSHDASNVMMLTGRAAVVNRLVEIIERVDKAGDEEVEIVKLKF 205 Query: 83 -SPRTMY----LFGKNVGQAN--------VILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 S + K G+A+ V+ M++ DI + I +L + + Sbjct: 206 ASATELVRIIESINKTTGKASASGKDAPRVVADDRTNSIMVSGDIKARQRIVNLIERMDQ 265 Query: 130 FIADSN------IRVEMVSDTV-VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS- 181 + S ++ + V VL G+ +IQ ++ S + ++ + S+ Sbjct: 266 ELETSGNTRVIFLKYSKAEELVKVLQGVSASIQAEEQGAAKSTSKAARDISIEAHEDSNA 325 Query: 182 -------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPS 227 + V+ L+I QV ++ I EV +G Q S + S Sbjct: 326 LVITAQPDMMRSLEDVIRQLDIR-RAQVQVEAIIVEVFEGDGTTVGVQWASEKYGAQQFS 384 Query: 228 KSFAADFGGKFVSE-------------------------------------GGDFSVKGV 250 G V+ GG Sbjct: 385 NGNVVGIGSLAVAAEQAEDTTTTTVGFDDDGDPYSFDETTEGDYTALASLLGGVNGFLVG 444 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGAT 305 + + VL A+ T L+ P LT + + A F G + +++ Sbjct: 445 AVKDGWGAVLQAVSTDTNSNVLSTPHLTTLDNEEAFFIVGQEVPIITGSTTGSNNTNPFQ 504 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 SV + G+ L TP + + L I+ EVS + + R+ TTV + G Sbjct: 505 SVERQEIGIKLKVTPQINEGNAVQLLIEQEVSSISGATSVDIL--INKREIKTTVIVDDG 562 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAM 424 GTIVL GL+ DD+Q+ +P+L IP LG LF+++ ++ + + + P +++ V Sbjct: 563 GTIVLGGLIDDDVQESVSKVPILGDIPYLGNLFKSTTTSKSKRNLMVFIRPTIIRDGVTA 622 Query: 425 RDLSRPDDHYSVEDDAKAFFFN 446 D+SR +Y + K Sbjct: 623 SDISRKKYNYIRAEQLKRQSEG 644 >gi|315295914|gb|EFU55227.1| type IV pilus secretin PilQ [Escherichia coli MS 16-3] Length = 386 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 129/319 (40%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + +++ + + NI ++ + + + Sbjct: 66 HSVAWQNDNVARQEVEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|300898927|ref|ZP_07117225.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1] gi|300357442|gb|EFJ73312.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1] Length = 386 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + NI ++ + + + Sbjct: 66 HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKAALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|262370669|ref|ZP_06063994.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter johnsonii SH046] gi|262314469|gb|EEY95511.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter johnsonii SH046] Length = 390 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 10/243 (4%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFAADFGGKF 238 ++++LL++A + QV ++ I D +++G + S G + D G Sbjct: 144 RMIDLLDVAVK-QVMVEARIVTASTDFSRELGIKWSAKKLGNSPVWGGDFQPSFDLGVDL 202 Query: 239 VSEGGDFSVKGV--LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G+ + + L AL+ L+ P + Q A G + Y+ Sbjct: 203 ATNTAGTFNFGLLKISDYMLNLELSALQADGHGEVLSAPKVLTGDKQKAYILRGTEIPYQ 262 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 S+T + L TP++ G++ + ++ E + +G + Sbjct: 263 -TWSATEGLKTEFRAANLKLEVTPSITPDGKVQMALKIE--KDTVGTLTSAGYLINTNEL 319 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V + G T+VL G+ D Q E +P +P++GALF+N+ + +TE+ I TP Sbjct: 320 ETNVLVDDGETVVLGGIFDDIKQNQYEKVPFFGDLPVVGALFKNNTRSSAQTELLIFVTP 379 Query: 417 FLV 419 +V Sbjct: 380 RIV 382 >gi|33151657|ref|NP_873010.1| competence protein E [Haemophilus ducreyi 35000HP] gi|33147878|gb|AAP95399.1| competence protein E [Haemophilus ducreyi 35000HP] Length = 419 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 71/441 (16%), Positives = 152/441 (34%), Gaps = 52/441 (11%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 R F++ S L A +++ E K +S ++K L++ Sbjct: 1 MRILFSLFFFISLSLLAQPLSLSLKNAPTAEILSYLAEENMKNIVLSDQIDKNTTLRIEN 60 Query: 65 DVQDVLVSDPTKADVVVHSPR---TMYLFG--KNVGQANVILIGHDGKQMLNLDILIERD 119 D +V + S R +Y G K I G K + L Sbjct: 61 SHFDEIV--ESIVRANQLSKRKEKQIYFIGHLKEDKAIEKIDNGDKPKLITQTIKLDYAK 118 Query: 120 IAHLEMTLRRFIADSNI-------RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 + + +L + + N+ + S+++++ + + + L + + Sbjct: 119 ASEVIESLTKGKGNGNVLSEQGYLYFDERSNSLIIK---DSPDSMKHILALIKNLDKPT- 174 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------- 224 +Q+ ++ I + L+++G + + S Sbjct: 175 ---------------------EQIAIEARIVTISSQDLQELGVRWGMFSPSDDYHKVASS 213 Query: 225 ----GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G + + + + ++ + L ALE+ + +A P L Sbjct: 214 LETKGLTTANHLNVNFPVNNATSLALQVARINSRVLDLELTALEQENNVEIIASPRLLTT 273 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + + AS G + Y + ++ + + L TP + + +I L + + P Sbjct: 274 NKKPASIKQGAEIPYVLYNRKDEVKNIEFKEAVLGLQVTPHISADNQILLDLVVTQNSPN 333 Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + ++ +T V G TIVL G+ + + ++ +PLL IP+L LF Sbjct: 334 LNNTAVNGLITIDKQELNTQVFAKHGETIVLGGIFQHLTAKGEDRVPLLGSIPVLKKLFS 393 Query: 400 NSRFNREETEIFIAATPFLVK 420 +S + E+ I TP+LV+ Sbjct: 394 HSTDKITKRELVIFVTPYLVQ 414 >gi|167855583|ref|ZP_02478343.1| type II secretory pathway, component HofQ [Haemophilus parasuis 29755] gi|167853274|gb|EDS24528.1| type II secretory pathway, component HofQ [Haemophilus parasuis 29755] Length = 420 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 96/239 (40%), Gaps = 12/239 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV----- 247 +Q+ ++ I + + L+Q+G + + + K G + + + Sbjct: 173 TEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPS 232 Query: 248 ------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 ++ L ALE I +A P L + AS G + Y S Sbjct: 233 ASVALQIAAINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKK 292 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 T + + + L TP + +I L + + P +N M + ++ +T V Sbjct: 293 KEITDIEFREAVLGLEVTPHISKQNQILLDLAISQNSPNNQMNNM-MATIDKQEINTQVL 351 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G TIVL G+ + I + ++ +PLL IP++ LF +R + E+ I TP++VK Sbjct: 352 AKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKRELVIFVTPYIVK 410 >gi|301019596|ref|ZP_07183756.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1] gi|300399184|gb|EFJ82722.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1] Length = 386 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + NI ++ + + + Sbjct: 66 HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKAALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|152991308|ref|YP_001357030.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2] gi|151423169|dbj|BAF70673.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2] Length = 495 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 55/316 (17%), Positives = 117/316 (37%), Gaps = 40/316 (12%) Query: 121 AHLEMTLRRFI--ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 L+ L+ F+ S++ + + V + G + Sbjct: 188 DSLKQQLQTFLHDPHSDVFLNKDASIVTVTGT------------------------KEEL 223 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + L QV ++ I EV+ + + +G S S+S G Sbjct: 224 DKVERFLQKLQDRMHKQVMIEAKIIEVQYNDDQTVGIDWSKFSLDVTGSRSAQQSRSGST 283 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + FS + +L L++ ++ L+ P + ++ Q A G Q Y+ Sbjct: 284 KLNNFGTPDYFIGYNFSMQGLLDFLKKYGKVKILSNPKVMTLNNQPAIINVGDQLSYRYE 343 Query: 299 SS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVN 344 + + S+ G+ L+ P + I ++I S N Sbjct: 344 NGVVITGGNAVANQTYSIGQTFVGISLYVIPEITENSDIIMKINPVTSALKNENIGYETN 403 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P R+++ + V++ G I++ GL+ + + +P+L IPI+G F++ + Sbjct: 404 RTLPPDIRLKQVTSIVKVKDGQKILIGGLISKNYSKQFNKVPVLGDIPIIGYAFKSKNNS 463 Query: 405 REETEIFIAATPFLVK 420 +++E+F+ P +VK Sbjct: 464 VKKSELFVLIIPKIVK 479 >gi|224368216|ref|YP_002602379.1| PilQ [Desulfobacterium autotrophicum HRM2] gi|223690932|gb|ACN14215.1| PilQ [Desulfobacterium autotrophicum HRM2] Length = 727 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 3/228 (1%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q+ + + EV ++ K +G S++ +++ ++ G + Sbjct: 497 TPQIMISARVVEVNKNFSKSLGIDWSVSKNNANSGFDVIMNYPVASDGSLGFDFSRIFGT 556 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + + L A E ++ ++ P + + + A G +G +SV + Sbjct: 557 ELALDATLSASEIKGDVKIISSPKILTLDNKKAKIK-QGLEYAYLERDDSGGSSVLFKNI 615 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 ++L TP V RIG+ + ++ V+ +PS +A+T + + G TIV+ G Sbjct: 616 DLLLEVTPHVTPDNRIGMSVLITKNDLASVVDG--VPSLSTNEAETELLVNDGNTIVIGG 673 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++K+ + G P LS IP+LG LF + + E+ I TP +V+ Sbjct: 674 IVKNTSSTSETGFPGLSNIPLLGKLFGSDSTEDTKNELLIFITPTIVQ 721 >gi|330889718|gb|EGH22379.1| general secretion pathway protein D [Pseudomonas syringae pv. mori str. 301020] Length = 680 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G +++ S R + + + L+ QV ++ I EV Sbjct: 363 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 421 Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G Q S T + + G + + + + L Sbjct: 422 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 481 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314 ALE + L+ P+L ++ Q A G S +T ++ V GV Sbjct: 482 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 541 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 +L P + G + + IQ +VS +A P R T V SG T++L Sbjct: 542 ILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSGQTVLLG 601 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ + + Sbjct: 602 GLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQVT 659 Query: 432 DHYSV 436 D Y Sbjct: 660 DDYRQ 664 >gi|195934879|ref|ZP_03080261.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. EC4024] gi|320191599|gb|EFW66249.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7 str. EC1212] gi|326337648|gb|EGD61483.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7 str. 1044] gi|326344601|gb|EGD68350.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7 str. 1125] Length = 386 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + NI ++ + + + Sbjct: 66 HSIAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|308047936|ref|YP_003911502.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799] gi|307630126|gb|ADN74428.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799] Length = 723 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 68/383 (17%), Positives = 128/383 (33%), Gaps = 64/383 (16%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-------VEMVSDTVVLHGMV 151 V+ +++ D + A L L + + +S + VL G Sbjct: 240 VVADERTNSVVISGDERARQRAAALVRELDQEMQNSGNTKVVYLKYAKAEDLQEVLSGFA 299 Query: 152 RTIQDSQ--------------RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 ++Q + + +++ + + V+ L+I QV Sbjct: 300 ESLQTEEGGSAQTQRRRNNEITIMAHADSNALVINAQPDQIQTLESVIRQLDIR-RAQVL 358 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------------------- 235 ++ I E+ G Q +F G Sbjct: 359 VEAIIVEIAEGDEVGFGVQWGSADGGLIQYNTFGTTIGEVGAGIWDARDVPGTEVCSPEG 418 Query: 236 -------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + + + F ++ A+ + LA P++T + Sbjct: 419 VCTTNPDQDGDITTLAAALSKVNGMAWGVAMGDFGALIQAVAADSNSNVLATPSITTLDN 478 Query: 283 QSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 Q ASF G + T ++ T+V + G+ L TP + + L I+ EVS Sbjct: 479 QEASFIVGDEVPVITGSTSGSNNDNPFTTVERKEVGIKLKVTPQINEGNAVQLEIEQEVS 538 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 ++ R TTV SG T+VL GLL +D+Q+ +PLL IP++G L Sbjct: 539 NVNGRTAVD--VTFGKRTLTTTVLADSGETVVLGGLLNEDVQESVSKVPLLGDIPVIGHL 596 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F ++ + + + I P +++ Sbjct: 597 FSSTSSKKTKRNLMIFIKPTIIR 619 >gi|300974788|ref|ZP_07172732.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1] gi|301050407|ref|ZP_07197293.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1] gi|300297875|gb|EFJ54260.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1] gi|300410491|gb|EFJ94029.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1] gi|315291661|gb|EFU51017.1| type IV pilus secretin PilQ [Escherichia coli MS 153-1] Length = 386 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + NI ++ + + + Sbjct: 66 HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|300987128|ref|ZP_07178014.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1] gi|300306272|gb|EFJ60792.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1] gi|323189024|gb|EFZ74308.1| transport protein hofQ [Escherichia coli RN587/1] gi|324009420|gb|EGB78639.1| type IV pilus secretin PilQ [Escherichia coli MS 57-2] gi|324014615|gb|EGB83834.1| type IV pilus secretin PilQ [Escherichia coli MS 60-1] gi|330909424|gb|EGH37938.1| type 4 pilus biogenesis protein PilQ [Escherichia coli AA86] Length = 386 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + NI ++ + + + Sbjct: 66 HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|289625539|ref|ZP_06458493.1| general secretion pathway protein D [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866897|gb|EGH01606.1| general secretion pathway protein D [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 775 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G +++ S R + + + L+ QV ++ I EV Sbjct: 458 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 516 Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G Q S T + + G + + + + L Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314 ALE + L+ P+L ++ Q A G S +T ++ V GV Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 636 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 +L P + G + + IQ +VS +A P R T V SG T++L Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSTADTNSTNNDANGNPRISTRSVATQVAAQSGQTVLLG 696 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ + + Sbjct: 697 GLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQVT 754 Query: 432 DHYSV 436 D Y Sbjct: 755 DDYRQ 759 >gi|238792812|ref|ZP_04636443.1| General secretion pathway protein D [Yersinia intermedia ATCC 29909] gi|238727920|gb|EEQ19443.1| General secretion pathway protein D [Yersinia intermedia ATCC 29909] Length = 658 Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 10/257 (3%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--V 239 V+ L++ QV ++ I E + +G Q S +A+ + Sbjct: 348 DLVIEKLDVR-RAQVLVEAIIVETQNGEGLNLGIQWENKFSGGVNFIPNSANTRNNSERM 406 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + + ++ + AL + LA P++ + A F G + T + Sbjct: 407 PPMAIAGLTAGFYKGNWSGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLTST 466 Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352 +T S++ + GV+L P + + L I+ EVS +A + Sbjct: 467 QTTSTDRVYNSISRKNVGVMLKVKPQINKGDSVLLEIRQEVSSIADSSDANANNLGSIFN 526 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + V + SG T+V+ GLL I ++ IP+L IP +G LFR + E++ + + Sbjct: 527 KRVVNNAVLVKSGETVVVGGLLDKKIYKIVNKIPILGDIPFIGGLFRQKKEKVEKSNLIL 586 Query: 413 AATPFLVKPVAMRDLSR 429 P +++ + +L Sbjct: 587 FIKPTILRETSDYNLVT 603 >gi|206901782|ref|YP_002250755.1| bacterial type II and III secretion system protein [Dictyoglomus thermophilum H-6-12] gi|206740885|gb|ACI19943.1| bacterial type II and III secretion system protein [Dictyoglomus thermophilum H-6-12] Length = 1256 Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 137/324 (42%), Gaps = 38/324 (11%) Query: 97 ANVILIGHDGKQMLNLDILIER-DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 ++ +G ++ + ++ + L+ + D N + S +++ G Sbjct: 969 TTAVVATKEGAPIVTKEYKLKYISLDTLKSVVSGIAKDVNFYYDQTSGLLLVQG------ 1022 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 + + + + ++ L+ QV + V + EV R+ +K IG Sbjct: 1023 PADQVSSV------------------ESMIAKLDKPTP-QVKIDVQVIEVSRENIKDIGI 1063 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + S+G + + +S +++ + ALE + LA+P Sbjct: 1064 EWGTGSISTGLQITANVGWQDLRIS---------IINPGQISANIKALESQNKAKILAQP 1114 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ++T +SG+S + G + + G V+ D G++L+ TPTV + G I + + Sbjct: 1115 SMTTVSGKS-TRIMIGDRVPLISYDAQGNRQVSFVDVGIILNVTPTVNADGTITANLNPQ 1173 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 VS V D+P R+A T V L +G T+ L GLL+ + + +PLL IPILG Sbjct: 1174 VSTIQGYVQ--DVPIISTREAQTIVNLKNGETLALGGLLRQEEIESMSKVPLLGDIPILG 1231 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF+ + + E E+ I TP ++ Sbjct: 1232 ELFKARKIQKVERELIILITPKII 1255 >gi|219872291|ref|YP_002476666.1| competence protein E/type II secretory pathway, component HofQ [Haemophilus parasuis SH0165] gi|219692495|gb|ACL33718.1| competence protein E/type II secretory pathway, component HofQ [Haemophilus parasuis SH0165] Length = 420 Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 96/239 (40%), Gaps = 12/239 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV----- 247 +Q+ ++ I + + L+Q+G + + + K G + + + Sbjct: 173 TEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPS 232 Query: 248 ------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 ++ L ALE I +A P L + AS G + Y S Sbjct: 233 ASVALQIAAINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKK 292 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 T + + + L TP + +I L + + P +N M + ++ +T V Sbjct: 293 KEITDIEFREAVLGLEVTPHISKQNQILLDLAISQNSPNNQMNNM-MATIDKQEINTQVL 351 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G TIVL G+ + I + ++ +PLL IP++ LF +R + E+ I TP++VK Sbjct: 352 AKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKRELVIFVTPYIVK 410 >gi|293393378|ref|ZP_06637690.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582] gi|291424115|gb|EFE97332.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582] Length = 411 Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 63/292 (21%), Positives = 120/292 (41%), Gaps = 25/292 (8%) Query: 154 IQDSQRAVELSETFLSQSGR--NQYANSSSKKVMNLLNIAGE------------------ 193 A ++ + +Q G ++ + K N L I Sbjct: 119 ALQHADAETIAASLQAQRGTLLSERGSVVVDKRTNALMIRDAAPALSALQGWLRELDKPL 178 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGV 250 +QV L I + R+ L+++G + +T + +F S Sbjct: 179 EQVQLAAHIVTISREDLRELGVRWGLTADQRAAKRLRIDNFSVGLPLERSAINVGFHLAR 238 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + + L ALE+ A+ +A P L + Q+AS G + Y+ S ++GAT++ Sbjct: 239 VSGRLLDLELMALEQENAVEIIASPRLLTANQQTASIKQGTEIPYEVSSGASGATAIQFR 298 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP +L G I L + + P + +G+ + ++ T V + +G T+ Sbjct: 299 EAVLGMEVTPRILPNGLITLTLHISQNMPGRAVRQGSGEALAIDKQEIKTQVTVKNGETV 358 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 VL G+ + + +P L +P+LG+LF+ S ++ E+ I TP L+K Sbjct: 359 VLGGIFQRQRSHGADKVPGLGDVPLLGSLFKQSSKQHKKRELVIFITPTLIK 410 >gi|320330838|gb|EFW86812.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. glycinea str. race 4] Length = 701 Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 345 RKVGSVLLVAPSDEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 402 TSAESKADERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460 Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246 D KQ+G + + ++SG + ++ Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 520 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + L A+E+ +++P + ++A G + Y+ SS+GAT+ Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V+ + + L TP + RI + ++ EP +P + + + V + G Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP + Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691 >gi|241668668|ref|ZP_04756246.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877201|ref|ZP_05249911.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843222|gb|EET21636.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 587 Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 70/411 (17%), Positives = 148/411 (36%), Gaps = 29/411 (7%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84 P + + + +++ ++ + V +D+++V P ++V+ S Sbjct: 182 PITISFKDTPVQTVLQVLSEFAGLNLVVSSSVRGNVSIDLKNV----PWNEVMNIVLVSK 237 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 L K + + + L++ +R + + + FI + + Sbjct: 238 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 294 Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + +G + + + S + T + + V+N ++I DQV ++ Sbjct: 295 ITSMAKQNGGIMSPRGS--ITSDARTNTLIVTDTEEKIPLIRNVINEIDIPN-DQVLIEA 351 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-------DR 253 I EV+R ++GF + ++ S E V Sbjct: 352 RIVEVQRTSGLELGFNYGVSHPSGLNVGLDTFRNPTPKPGETDTSVVASTARLAYTLAGG 411 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 E + ALE + ++ P L + ++A F G+ + ++++GA SV + Sbjct: 412 LQLEMEIRALENESLANLVSSPHLVVSNNETA-FIKDGKDVPYQQATASGAASVAFQEAV 470 Query: 314 VVLHFTPTVLSPGRIGL-----RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + L TP + G I + + S P R+ T V + T+ Sbjct: 471 LELQVTPQIAPDGNIVMEVLVTKNSVGASSGKTSTGEDLPPIINKREVTTKVMVKDSETV 530 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V+ G+ + + + IP L IP LG LF ++ + E+ I TP ++ Sbjct: 531 VIGGIYTKEQTETRNKIPFLGDIPYLGYLFSYTKIEDRDAELLIFITPKII 581 >gi|332750832|gb|EGJ81239.1| transport protein hofQ [Shigella flexneri 2747-71] gi|332763627|gb|EGJ93866.1| protein involved in utilization of DNA as a carbon source [Shigella flexneri 2930-71] gi|332997370|gb|EGK16986.1| transport protein hofQ [Shigella flexneri K-218] gi|333012492|gb|EGK31873.1| transport protein hofQ [Shigella flexneri K-304] Length = 386 Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + +I ++ + + + Sbjct: 66 HSIAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 245 QPASIKQESEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|312968303|ref|ZP_07782513.1| transport protein hofQ [Escherichia coli 2362-75] gi|312287128|gb|EFR15038.1| transport protein hofQ [Escherichia coli 2362-75] Length = 386 Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + NI ++ + + + Sbjct: 66 HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|114321548|ref|YP_743231.1| general secretion pathway protein D [Alkalilimnicola ehrlichii MLHE-1] gi|114227942|gb|ABI57741.1| general secretion pathway protein D [Alkalilimnicola ehrlichii MLHE-1] Length = 673 Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 81/457 (17%), Positives = 159/457 (34%), Gaps = 40/457 (8%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 + L P L AN+ +I+ + + + + + +++ ++ V + Sbjct: 148 LVPVLRPLVPQDGHLAAYSPANSLIISDTAANVDRLEVLIGRVDRDTEGEIEVIQLEHAA 207 Query: 72 SDPTKADVVVHSP-----RTMYLFGKNVGQANVILIGHDGKQMLN---LDILIERDIAHL 123 + V R + + + +I + ++ I E Sbjct: 208 ASEVVRMVRELEDEEREGRRLRVVADERANSVMIAGDRQRRLLVRALIGQIDSEVAAEGT 267 Query: 124 EMTLRRFIADSN---IRVEMVSDTVVLH-GMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + AD+ +E + +++ G S T Sbjct: 268 AQVVYLRFADAEELVPVLEGIGTSLLESRGGNDAGGQGLDIRAHSSTNALVMNGPADVLR 327 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS------------ 227 S + V+N L+I QV ++ IAEV +D ++++G Q + G Sbjct: 328 SLRSVLNRLDIR-RAQVLVEAVIAEVSQDRVEELGVQWGVLSEDRGVGLINFGGAAGAGG 386 Query: 228 -----------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 S + V +G V + ++ AL +A L+ P+ Sbjct: 387 GIADVIRAAGAISDGSTADLPQVGDGAAIGVGDLRGSTQVAALIRALSGDSASNILSTPS 446 Query: 277 LTAISGQSASFTSGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 L + + A G + T S +S+ D GV L P + + L I Sbjct: 447 LMTMDNEEAEIVVGQNVPFITGRAIEDSGQAFSSIQRQDVGVQLRIRPQINEGDTLKLEI 506 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EVS G+ +R T+V + +G +VL GL+ D ++ + +PLL +P Sbjct: 507 EQEVSSVSGGIQGAADLVTDLRSVRTSVMVENGQMVVLGGLIDDQLRTRSQAVPLLGNLP 566 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 LG LFR R E+ + + P +++ A ++ + Sbjct: 567 GLGRLFRYDRSQVEKRNLMVFLRPVIIRDTAAQERAT 603 >gi|251790891|ref|YP_003005612.1| general secretion pathway protein D [Dickeya zeae Ech1591] gi|247539512|gb|ACT08133.1| general secretion pathway protein D [Dickeya zeae Ech1591] Length = 696 Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 97/260 (37%), Gaps = 12/260 (4%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 A + ++ L++ +QV ++ + EV++ +G S Sbjct: 385 SAPPDAMRQAASIIRQLDVR-HEQVLVEAIVVEVQQAEGLNLGIAWGNRNYGGSNFNSVN 443 Query: 232 ADFGGKFVSEGGDF-----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 G + + + ++ T+ +ALE LA P++ + A Sbjct: 444 VGNGFNQPNPLVNALKGTEGLVAGFYHGNWGTLFNALESNKRNNILATPSVVTLDNHRAE 503 Query: 287 FTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 F G T S +T +V G+ P + G I L I E+S Sbjct: 504 FNVGQDVPILTGSQTTNNDNIFNTVQRRTIGIKFSILPRINQSGTILLNISQEISSLSDT 563 Query: 343 VNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + +R + V++ T+V+ GLL D+ ++ +PLL IP LG LFR Sbjct: 564 AQVNSNLGSVFNIRTVNNVVQVQDDETVVIGGLLDDEKKETTNKVPLLGDIPWLGNLFRY 623 Query: 401 SRFNREETEIFIAATPFLVK 420 + N ++ + + P +++ Sbjct: 624 TSQNNDKRNLMLFIRPRIIR 643 >gi|330872058|gb|EGH06207.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. glycinea str. race 4] Length = 681 Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 325 RKVGSVLLVAPSDEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 381 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 382 TSAESKADERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 440 Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246 D KQ+G + + ++SG + ++ Sbjct: 441 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 500 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + L A+E+ +++P + ++A G + Y+ SS+GAT+ Sbjct: 501 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 559 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V+ + + L TP + RI + ++ EP +P + + + V + G Sbjct: 560 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 619 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP + Sbjct: 620 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 671 >gi|306816271|ref|ZP_07450409.1| outer membrane porin HofQ [Escherichia coli NC101] gi|222035093|emb|CAP77838.1| Protein transport protein hofQ [Escherichia coli LF82] gi|305850667|gb|EFM51124.1| outer membrane porin HofQ [Escherichia coli NC101] gi|307628452|gb|ADN72756.1| outer membrane porin HofQ [Escherichia coli UM146] gi|315286025|gb|EFU45463.1| type IV pilus secretin PilQ [Escherichia coli MS 110-3] Length = 386 Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + NI ++ + + + Sbjct: 66 HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|320322061|gb|EFW78157.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. glycinea str. B076] Length = 701 Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 345 RKVGSVLLVAPSDEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460 Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246 D KQ+G + + ++SG + ++ Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 520 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + L A+E+ +++P + ++A G + Y+ SS+GAT+ Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V+ + + L TP + RI + ++ EP +P + + + V + G Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP + Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691 >gi|238783680|ref|ZP_04627700.1| General secretion pathway protein D [Yersinia bercovieri ATCC 43970] gi|238715393|gb|EEQ07385.1| General secretion pathway protein D [Yersinia bercovieri ATCC 43970] Length = 661 Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 65/345 (18%), Positives = 133/345 (38%), Gaps = 27/345 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192 VL+G+ + + ++A +S++ Y +++ ++V+ L++ Sbjct: 303 VLNGISQGQRSDKKASVVSKSQSGNIAIKAYDQTNALVITADLRMMKELEQVIEKLDVR- 361 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--VSEGGDFSVKGV 250 QV ++ I E + +G Q + S + Sbjct: 362 RAQVLVEAIIVETQNAEGLNLGIQWANKYSGGINLLPRPGHARSHSEQPMPMVIAGLTAG 421 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATS 306 + ++ + AL + LA P++ + A F G + T + +T S Sbjct: 422 FYKGNWNGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLTSTQTTATDKVYNS 481 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELP 363 ++ G++L P + + L I+ EVS N + R + V + Sbjct: 482 ISRQSVGIMLKVKPQINKGDSVLLEIRQEVSSVADSSNTNTNNLGFIFNKRAINNAVLVK 541 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SG T+V+ GLL + + + IPLL IP +G LFR S+ +++ + + P +++ Sbjct: 542 SGETVVVGGLLDEKLSKTVNKIPLLGDIPFIGGLFRQSKEKVDKSNLILFIKPTILRETN 601 Query: 424 MRDLSRPDDH--YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + D H Y + + N N++Y A+E++ +Y Sbjct: 602 DYSVVTIDKHTKYKDSNSQENTINN--NRLYHDLLATEIKSDSYN 644 >gi|197117937|ref|YP_002138364.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis Bem] gi|197087297|gb|ACH38568.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis Bem] Length = 946 Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 68/442 (15%), Positives = 157/442 (35%), Gaps = 61/442 (13%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIG----KGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 P + ++ + + G+++++ + + ++ + +V + Sbjct: 523 VAEELTPTPARTSDDMAVQLPSDRPAKKVYTGRRVTLEFSDADVRKIFQLIAEVSNLNFL 582 Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA--- 132 AD V G ++ L+ Q L++ + + E + + Sbjct: 583 IADDVT-------------GTISIKLVNVPWDQALDVILDAKGLAMVREGNIVQIKPRSK 629 Query: 133 -----DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF--LSQSGRNQYANSSSKKVM 185 D + + ++ ++ + + +++ F L + + +V+ Sbjct: 630 MQNQADEELAAKKAAERLMELKTMVFEVNYASVNDVAMQFGMLKSDRGVITKDERTSRVI 689 Query: 186 --------NLLNI------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 N + A E QV ++ I E + +G Q ++ S + Sbjct: 690 VKDIQTALNDMKALLKTLDAPEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASVAGI 749 Query: 232 ADFGGKFVS--------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 F G S + + L A ++ ++ P + Sbjct: 750 NSVDTGFGGVVSAAGPGSSGAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKV 809 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 ++ ++A + G Y+T S+ T + + L TP + + G + ++I+ + Sbjct: 810 VTLNNKAAKISQGQSIPYQTTSAEG--TKTEFVEAALTLEVTPHITADGSVSMKIKASNN 867 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 P G P ++A T + + +G T V+ G+ D + G+P LS IP+LG L Sbjct: 868 SP----GTGSPPPINKKEATTELVVSNGDTTVIGGIYVDSDTESDTGVPFLSDIPLLGWL 923 Query: 398 FRNSRFNREETEIFIAATPFLV 419 F+++ + +TE+ I TP +V Sbjct: 924 FKSNSKQKTKTELLIFITPKIV 945 >gi|283788039|ref|YP_003367904.1| T2SS protein D [Citrobacter rodentium ICC168] gi|282951493|emb|CBG91192.1| putative T2SS protein D [Citrobacter rodentium ICC168] Length = 662 Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 109/295 (36%), Gaps = 25/295 (8%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + ++ +T NQ + V+ L+I QV ++ I EV+ Sbjct: 302 SAPSSNNAISITADEQTNSLVITANQSQLQQLEPVIEKLDIR-RAQVLVEAIIVEVQDGK 360 Query: 210 LKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDF-------SVKGV 250 +G Q + + + G S+ + + Sbjct: 361 GLNLGVQWANKNIGATQFTNTGLPIFNAAQGVKEFKKQGGITSDNPAYDLFSKYRGMAAG 420 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATS 306 + +L AL + L+ P++ + + ASF G + S +T ++ Sbjct: 421 FFSGDWAVLLTALSSDSKNDILSTPSIVTLDNKEASFNVGQDVPVLSGSQTTSGDNIYST 480 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSG 365 V G L TP + + + I+ EVS ++ + P++ R V + SG Sbjct: 481 VERKTVGTKLKVTPQINEGDSVLMEIEQEVSSVDSTASSSSLGPTFNTRTIQNAVLVKSG 540 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GL+ D ++ +PLL IP +G LFR + + + + + P +++ Sbjct: 541 ETVVLGGLMDDSSKEEVSKVPLLGDIPFIGQLFRYTNHEKSKRNLMVFIRPTIIR 595 >gi|239787173|emb|CAR94716.1| wmpD protein [Pseudoalteromonas ruthenica] Length = 688 Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 103/286 (36%), Gaps = 47/286 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +KV+ L+I QV ++ I EV G Q + G Sbjct: 342 EKVIERLDIR-RAQVLVEAIIVEVSEGDGVNFGLQWISEQGGMLQFNNGTTVPVGSLAVA 400 Query: 242 ---------------------------------------GGDFSVKGVLDRFSFETVLHA 262 GG + + + + ++ A Sbjct: 401 AEQARDKTITDNVVGSESGVVTPISRTEEGDLGPLASLLGGINGLAMGIVKNDWGAIVQA 460 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLH 317 + T LA P++T + + AS G + T SS+ +V + GV L Sbjct: 461 VSNDTNSNILATPSITTMDNEEASMIVGQEVPIITGSSTGSNNENPFQTVDRQEVGVKLK 520 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + + L I+ EVS S R TTV GG +VL GL+ +D Sbjct: 521 VTPQINDGSAVQLTIEQEVSNVAGSTAVD--ISINKRAITTTVLADDGGMVVLGGLIDED 578 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +Q+ +PLL IP+LG LF+++ ++ + + + P +++ + Sbjct: 579 VQESVSKVPLLGDIPVLGHLFKSTSTSKRKRNLIVFIRPTILRDIE 624 >gi|332085619|gb|EGI90783.1| transport protein hofQ [Shigella dysenteriae 155-74] Length = 386 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + + +I ++ + + + Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+VL G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|327251020|gb|EGE62713.1| transport protein hofQ [Escherichia coli STEC_7v] Length = 386 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + +I ++ + + + Sbjct: 66 HSVAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKAALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|257483507|ref|ZP_05637548.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330984730|gb|EGH82833.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009590|gb|EGH89646.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 701 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460 Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246 D KQ+G + + ++SG + ++ Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 520 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + L A+E+ +++P + ++A G + Y+ SS+GAT+ Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V+ + + L TP + RI + ++ EP +P + + + V + G Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP + Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691 >gi|220933412|ref|YP_002512311.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7] gi|219994722|gb|ACL71324.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7] Length = 655 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 82/460 (17%), Positives = 155/460 (33%), Gaps = 49/460 (10%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 + L P L E+N +++ S + ++ ++ + + Sbjct: 136 AAQLVPILRPLVPQSGHLVASAESNVLIVSDSAANAERIAELVARIDLDGREDLEMIPLR 195 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 + + G+ GQ ++ +L D I + L Sbjct: 196 HASAAEVVRVLTSLHGGGE---GRR-GQMQMVADERTNSILLGGDPKRRVAIRAMISHLD 251 Query: 129 RFIADSNIRV------EMVSDTVVLHGMVRTIQDSQ------------RAVELSETFLSQ 170 I N +V + VL G+V+ + +A E + + Sbjct: 252 TRIEGGNTQVVYLRYANAMDMAEVLKGLVQGMDVPGADGREGRGGINIQAHESTNALVLS 311 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 + + + V+N L++ QV ++ IAEV D + ++G Q + +SG Sbjct: 312 GPPDAVRDLRA--VINQLDVR-RAQVLVEAVIAEVSYDKITELGVQWGVGNPNSGVGVIN 368 Query: 231 AADFGGKFVSEGGD--------------------FSVKGVLDRFSFETVLHALERATAIR 270 G + G G + ++ AL ++ Sbjct: 369 FNRSGSGIIGVAGGIDAFLRGAVATPPNLGDGAFLGGIGTSGSTTIAALVRALAGDSSSN 428 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPG 326 L+ P+L + + A G + S ++ D GV L P + Sbjct: 429 ILSTPSLMTMDNEEAEIVVGQNVPFIAGRSIEQSGQAFDTIQRQDVGVKLRIKPQINEGN 488 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L I+ EVS+ G A R T V + G +VL GL+ D + Q ++ +P Sbjct: 489 SIRLEIEQEVSQVAAGATAAADLVTNKRSLRTIVMVDDGEMVVLGGLIDDVLVQTQDRVP 548 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L IP +G LFR +E+ + + P +V+ A+++ Sbjct: 549 GLGSIPGVGRLFRYDTARKEKRNLMVFLHPVIVRDSAVQE 588 >gi|260770770|ref|ZP_05879699.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio furnissii CIP 102972] gi|260614007|gb|EEX39197.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio furnissii CIP 102972] gi|315178810|gb|ADT85724.1| general secretion pathway protein D [Vibrio furnissii NCTC 11218] Length = 675 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 54/320 (16%), Positives = 113/320 (35%), Gaps = 49/320 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIA 203 G + +QR + + A V+ L+I QV ++ I Sbjct: 296 TGQKSSSGAAQRNEVMIAAHADTNSLVITAPQDIMNAILDVVAQLDIR-RAQVLIEALIV 354 Query: 204 EVRRDILKQIGFQHSI--------------------------------------TGSSSG 225 E+ +G Q +G+ Sbjct: 355 EMSEADGINLGVQWGSLESGSVIQYSNSGASIGSVMVGLEEAKDQTTTEYYYDSSGNRRP 414 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + + + D+ + G + + ++ A+ + L+ P++T + A Sbjct: 415 YTSTESGDYSSLASALSGINGAAVSVLMGDWTALISAVSSNSNTNILSSPSITVMDNGEA 474 Query: 286 SFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 SF G + + ++ +V + G+ L P + + L I+ EVS + Sbjct: 475 SFIVGEEVPVITGSTSSSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLAIEQEVSNVL 534 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 A D+ + R+ +T+V + G +VL GL+ + + + +PLL IPI+G LF + Sbjct: 535 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERTAESESKVPLLGDIPIIGHLFSS 593 Query: 401 SRFNREETEIFIAATPFLVK 420 + E+ + + P +++ Sbjct: 594 TSTQVEKKNLMVFIKPTIIR 613 >gi|330807111|ref|YP_004351573.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375219|gb|AEA66569.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 696 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 103/255 (40%), Gaps = 21/255 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 +++ L+I QV ++ I E D K +G + + + G S G Sbjct: 434 RIVAQLDIPVR-QVMIEARIVEANVDYDKSLGVRWGGSVQNKGNWSSSGVTTGDSTTVGT 492 Query: 236 ------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + + D + L A+E+ +++P + + Sbjct: 493 PGSTSTNQPFVDLGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKE 552 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +A G + Y+ SS+GATSV+ + + L TP + RI + ++ EP Sbjct: 553 TAKILKGTEIPYQEA-SSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLN 611 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 D+P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR Sbjct: 612 KVNDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVV 671 Query: 404 NREETEIFIAATPFL 418 + ++E+ + TP + Sbjct: 672 SDSKSELLVFLTPRI 686 >gi|110632479|ref|YP_672687.1| Flp pilus assembly protein secretin CpaC-like [Mesorhizobium sp. BNC1] gi|110283463|gb|ABG61522.1| Flp pilus assembly protein secretin CpaC-like protein [Chelativorans sp. BNC1] Length = 473 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 94/446 (21%), Positives = 172/446 (38%), Gaps = 55/446 (12%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 + G+++ I + K + L + + + V+DPT AD+ +++GK+ G+ Sbjct: 73 TWAQASPAYGQRLIIEIGKGLQLSGTENAESLFVADPTIADIKESPGEAHFIYGKSAGET 132 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 V + G+ + D+++ ++ ++ L + + I + +V G V Q Sbjct: 133 TVTGVDLGGRTLFQYDMVVIYNLDEMQRMLSQRFPAARITIRSARGSVYATGTVPDQQTY 192 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 A+E E + +S ++N + +A + L + EV RD L+ G Sbjct: 193 DAAIESLEKSIPESV-----------LINEIAVAESPIIRLDIKFMEVSRDRLETYGVNW 241 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 S S+ G + L L++ TL Sbjct: 242 SALSPSNHYRTGDIRGRG------------------HDVNKFMKLLLDNGVATILSDTTL 283 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 T I + ASF +G + T S + GA S V G + FTP +L G++ L I+ E Sbjct: 284 TTIGRKKASFMAGEEIAIPTHSVNNGAASFGVDYKFVGFNIGFTPQLLPGGKVSLAIEAE 343 Query: 336 VSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-----LL 388 +SEP V ++G +P RK +T V+L SG + +LAGL + D + P ++ Sbjct: 344 ISEPRQTVQFSSGPVPYVAARKLNTNVDLHSGESFILAGLSRMDTTGAHDQ-PRRNWGVV 402 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS-VEDDAKAFFFNR 447 + +L +L + + +I + TP+ D D + + N+ Sbjct: 403 GE--VLRSLAGHGSVSAHNRDIAVVVTPY----FGASDKPSAADITGLQRSNIEFILSNK 456 Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIY 473 + G GF+Y Sbjct: 457 ---------SKPFSSARIYGPAGFLY 473 >gi|300822816|ref|ZP_07102952.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7] gi|300524582|gb|EFK45651.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7] gi|324018703|gb|EGB87922.1| type IV pilus secretin PilQ [Escherichia coli MS 117-3] gi|332996422|gb|EGK16049.1| transport protein hofQ [Shigella flexneri VA-6] gi|332996664|gb|EGK16289.1| transport protein hofQ [Shigella flexneri K-272] Length = 386 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + +I ++ + + + Sbjct: 66 HSIAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|300918298|ref|ZP_07134902.1| general secretion pathway protein D [Escherichia coli MS 115-1] gi|300414559|gb|EFJ97869.1| general secretion pathway protein D [Escherichia coli MS 115-1] Length = 650 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 107/295 (36%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S+ +K V+ L+I QV ++ I EV+ Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSAQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249 +G Q + + + G S + Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595 >gi|301021125|ref|ZP_07185165.1| general secretion pathway protein D [Escherichia coli MS 196-1] gi|299881655|gb|EFI89866.1| general secretion pathway protein D [Escherichia coli MS 196-1] Length = 654 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249 +G Q + + + G S + Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGLTSANPAWDMFSAYNGMAA 424 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599 >gi|71733370|ref|YP_272697.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553923|gb|AAZ33134.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. phaseolicola 1448A] Length = 701 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460 Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246 D KQ+G + + ++SG + ++ Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 520 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + L A+E+ +++P + ++A G + Y+ SS+GAT+ Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V+ + + L TP + RI + ++ EP +P + + + V + G Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP + Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691 >gi|71280718|ref|YP_271238.1| general secretion pathway protein D [Colwellia psychrerythraea 34H] gi|71146458|gb|AAZ26931.1| general secretion pathway protein D [Colwellia psychrerythraea 34H] Length = 697 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 70/391 (17%), Positives = 135/391 (34%), Gaps = 69/391 (17%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEM-----VSDTV-VLHGMV 151 ++ +++ ++ +A L L + ++ N RV D V VL G+ Sbjct: 231 IVADDRSNSVIVSGEVKARERVARLVKRLDSELESNGNTRVYYLKYSKAEDLVKVLQGVS 290 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQV 196 +I + + + A+ S+ + V+ L++ QV Sbjct: 291 DSIASETTTAKTKTRSSKKRDVSIEAHESTNALVITAQPDMLRSLEAVIRQLDVR-RAQV 349 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------------- 240 ++ I EV +G Q + A Sbjct: 350 LVEAIIVEVFESDGVSLGVQWYNEAGGFTQFTNGPASISSVAAGVQAAEGEPATKVTTID 409 Query: 241 -----------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 G + + + + ++ A+ T LA P++ Sbjct: 410 ANGNPVISENPSTDGDYSILAQVLGNVSGMMFGIAKNDWGAIVSAVSSDTNSNILATPSI 469 Query: 278 TAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 T + + A F G + T S++ +V + G+ L TP V + L I Sbjct: 470 TTLDNEEAYFIVGQEVPIITGSATGSNNANPFQTVDRQEVGIKLRVTPQVNEGNAVQLII 529 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EVS S R+ TTV SG T++L GL+ +D+Q+ + +P+L IP Sbjct: 530 EQEVSSVSGTTGVD--ISINKREIKTTVMADSGDTVILGGLIDEDVQESVQKVPILGDIP 587 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA 423 I+G LF+++ + + + + +V+ A Sbjct: 588 IIGHLFKSTSNSTRKRNLMVFLRATIVRDSA 618 >gi|323179085|gb|EFZ64659.1| transport protein hofQ [Escherichia coli 1180] Length = 377 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + + +I ++ + + + Sbjct: 57 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 116 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 117 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 175 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 176 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 235 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 236 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 295 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 296 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 355 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 356 DGKEDERRELVVFITPRLV 374 >gi|320180160|gb|EFW55099.1| General secretion pathway protein D [Shigella boydii ATCC 9905] Length = 654 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 62/295 (21%), Positives = 108/295 (36%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDR--- 253 +G Q S + + G S + + + Sbjct: 365 NGLNLGVQWSNKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424 Query: 254 ----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599 >gi|56459478|ref|YP_154759.1| Type II secretory pathway [Idiomarina loihiensis L2TR] gi|56178488|gb|AAV81210.1| Type II secretory pathway [Idiomarina loihiensis L2TR] Length = 557 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 101/259 (38%), Gaps = 24/259 (9%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSE 241 + +L + QV L+ I EV + Q G S S G + + Sbjct: 274 ITVLESRLQRQVILEARIIEVTLNDGYQQGINWSDIYSGNAGFGVDFNGVTPSNATSAAI 333 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---- 297 GG F + D +F ++ L+ ++ L+ P ++A + Q A G + T Sbjct: 334 GGLFGLTYTDDGNNFSGMIEMLQTQGTVQVLSNPRVSASNNQKAVIKIGEDEYFVTDVTS 393 Query: 298 --------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 SSS T G+ L TP + G + L + V E + Sbjct: 394 RTVLNTGGASSSDSDIEFTPFFSGISLDVTPQISDDGEVILHVHPSVVETSEQEKVITVS 453 Query: 350 S---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +R++DT V+ +G +VL GL++ + +PLL IP+LG LF N Sbjct: 454 GEESVLPLARSNIRESDTIVKARNGEIVVLGGLMQTTNSEEVGKVPLLGDIPLLGELFTN 513 Query: 401 SRFNREETEIFIAATPFLV 419 R +E+ E+ I P +V Sbjct: 514 RRNRQEKKELVILLKPTVV 532 >gi|322515010|ref|ZP_08068020.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976] gi|322118999|gb|EFX91171.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976] Length = 431 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 100/248 (40%), Gaps = 13/248 (5%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------------DFGGKF 238 +Q+ ++ I + + L+++G + + ++G K + + Sbjct: 172 RPTEQIAIEARIVTISSENLQELGVRWGMFSPANGHHKIAGSLEANGLPNTNHLNVNFPV 231 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE+ + +A P L + + AS G + Y Sbjct: 232 NNAASLALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQGTEIPYVLY 291 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKAD 357 + ++ + + L TP + + +I L + + P + + + ++ + Sbjct: 292 NRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPNSTSSTVHGLVTIDKQELN 351 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V G TIVL G+ + + ++ +P+L IP++ LF +S + E+ I TP+ Sbjct: 352 TQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVIKKLFSHSSDKISKRELVIFVTPY 411 Query: 418 LVKPVAMR 425 +VK + Sbjct: 412 IVKNGKPQ 419 >gi|77456637|ref|YP_346142.1| type II and III secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77380640|gb|ABA72153.1| pilus secretin [Pseudomonas fluorescens Pf0-1] Length = 692 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 64/350 (18%), Positives = 135/350 (38%), Gaps = 28/350 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ ++ IA L R + + +D L V Sbjct: 338 RKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 394 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + +++ L+I QV ++ I E Sbjct: 395 TSAEAKVDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVR-QVMIEARIVEANV 453 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGG-------------------KFVSEGGDFSVK 248 D K +G + + + G + G V+ + Sbjct: 454 DYDKSLGVRWGGSIQNKGNWNTSGVSNGSSTTIGTPGSTSTNSPFVDMGTVNNTSGIGIA 513 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + D + L A+E+ +++P + ++A G + Y+ SS+GATSV+ Sbjct: 514 FITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQEA-SSSGATSVS 572 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + L TP + RI + ++ EP D+P + + + V + G TI Sbjct: 573 FKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETI 632 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V+ G+ + ++ + +P L +P LG LFR + +++E+ + TP + Sbjct: 633 VIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRI 682 >gi|330964738|gb|EGH64998.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 701 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 402 TSAESKAEERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460 Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246 D KQ+G + + ++SG + + + Sbjct: 461 DYNKQLGVRWGGSTNTSGSGKWTTYGLDDNGDEAGNTSGNLTSNVPFVDLGAAGATSGIG 520 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + L A+E+ +++P + ++A G + Y+ SS+GAT+ Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V+ + + L TP + RI + ++ EP +P + + + V + G Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP + Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691 >gi|300937316|ref|ZP_07152157.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1] gi|300457639|gb|EFK21132.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1] Length = 386 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + NI ++ + + + Sbjct: 66 HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSTLEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|78484984|ref|YP_390909.1| type II and III secretion system protein [Thiomicrospira crunogena XCL-2] gi|78363270|gb|ABB41235.1| Type II secretion pathway protein D homolog [Thiomicrospira crunogena XCL-2] Length = 569 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 65/295 (22%), Positives = 122/295 (41%), Gaps = 28/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN---IAGEDQVTLKVTIAEVRRD 208 + ++ + + ++V N L+ QV ++ T+ EV Sbjct: 254 SASKSRKQFQNVVVNREAGMLSVYTTAKKHQQVKNYLDSSLNRTNKQVLIEATVVEVELS 313 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERAT 267 Q G S S+SG S + G +S+ +FS+ + ++F + L++ Sbjct: 314 DQYQAGVDWSAVNSNSGGSSDISQSLLGTNLSKDPNFSINLSSIGTWNFNIGIKMLQQFG 373 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------------STGATSVTTHDYGVV 315 + L+ P + A++ Q+A +Y TV +T T+V T G + Sbjct: 374 DAKVLSSPKIMAMNNQAALLKVVNNEVYFTVEVNRESATASSAGVTTYETTVHTVPVGFM 433 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPS 364 +H TP +S I L I+ +S V VN + +P + R+ D+ + L + Sbjct: 434 MHVTP-FISDDEISLNIRPTLSRIVGYVNDPNPDLARENIESKVPIIQEREMDSVLRLRN 492 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T ++ GL++D ++G+P LS +P +G LF ++E+ I P +V Sbjct: 493 RQTAIIGGLIQDTHDNQRQGVPGLSDLPWIGDLFSYRDDTVSKSELIIFIRPIIV 547 >gi|194439979|ref|ZP_03072038.1| general secretion pathway protein D [Escherichia coli 101-1] gi|307140008|ref|ZP_07499364.1| general secretory pathway component, cryptic [Escherichia coli H736] gi|331644021|ref|ZP_08345150.1| general secretion pathway protein D [Escherichia coli H736] gi|606259|gb|AAA58122.1| ORF_o654 [Escherichia coli str. K-12 substr. MG1655] gi|194421087|gb|EDX37115.1| general secretion pathway protein D [Escherichia coli 101-1] gi|315137900|dbj|BAJ45059.1| general secretion pathway protein D [Escherichia coli DH1] gi|323959524|gb|EGB55177.1| general secretion pathway protein D [Escherichia coli H489] gi|323970129|gb|EGB65403.1| general secretion pathway protein D [Escherichia coli TA007] gi|331036315|gb|EGI08541.1| general secretion pathway protein D [Escherichia coli H736] gi|332345271|gb|AEE58605.1| general secretion pathway protein GspD [Escherichia coli UMNK88] Length = 654 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249 +G Q + + + G S + Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599 >gi|254038486|ref|ZP_04872542.1| general secretion pathway protein D [Escherichia sp. 1_1_43] gi|226838992|gb|EEH71015.1| general secretion pathway protein D [Escherichia sp. 1_1_43] Length = 654 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249 +G Q + + + G S + Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599 >gi|296446147|ref|ZP_06888095.1| general secretion pathway protein D [Methylosinus trichosporium OB3b] gi|296256341|gb|EFH03420.1| general secretion pathway protein D [Methylosinus trichosporium OB3b] Length = 785 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 67/304 (22%), Positives = 126/304 (41%), Gaps = 22/304 (7%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V + AV+ ++ + + KV+ L++ +QV ++ TIAEV + Sbjct: 458 VSDDGRYKFAVDDAKNAIVVLATPEDYKRVL-KVVETLDV-LPNQVFIEATIAEVTLNDD 515 Query: 211 KQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF----------SFETV 259 G + + +S G + G + V F + + Sbjct: 516 LSFGVRWFLQKNASMGAFSDGDTGTPAANDTLGNNLLGAAVGAAFPGFAYAVRAANTQVT 575 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------THDYG 313 L AL + T + ++ P+LT + + A G Q T++ + VT D G Sbjct: 576 LSALNQITNVNIISTPSLTVLDNRQAVLQVGDQVPVTTLTGANTNGGVTTFNSVNYRDTG 635 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAG 372 V+L TP + GR+ L ++ EVS G + P+ + R+ T V + +++L G Sbjct: 636 VILSITPHINESGRVMLELEQEVSNVASGTSATSTTPTIKQRRVKTQVVVNDSESLMLGG 695 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L++D + IP++ IP+ G F++ + +TE+ I TP +V+ +A + D Sbjct: 696 LIQDSSSRGSSQIPVIGDIPLFGNAFKSKTNSAGKTELLIMITPHVVRTLA--EARDITD 753 Query: 433 HYSV 436 + Sbjct: 754 EFKR 757 >gi|298485082|ref|ZP_07003178.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160334|gb|EFI01359.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 718 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 63/352 (17%), Positives = 133/352 (37%), Gaps = 30/352 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 362 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 418 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 419 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 477 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGG---------------------KFVSEGGDFS 246 D KQ+G + + ++SG K Sbjct: 478 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIG 537 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + L A+E+ +++P + ++A G + Y+ SS+GAT+ Sbjct: 538 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 596 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V+ + + L TP + RI + ++ EP +P + + + V + G Sbjct: 597 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGE 656 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP + Sbjct: 657 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 708 >gi|330877965|gb|EGH12114.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 701 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 402 TSAESKAEERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460 Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246 D KQ+G + + ++SG + + + Sbjct: 461 DYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAGNTSGNLTSNVPFVDLGAAGATSGIG 520 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + L A+E+ +++P + ++A G + Y+ SS+GAT+ Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V+ + + L TP + RI + ++ EP +P + + + V + G Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP + Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691 >gi|253699252|ref|YP_003020441.1| general secretion pathway protein D [Geobacter sp. M21] gi|251774102|gb|ACT16683.1| general secretion pathway protein D [Geobacter sp. M21] Length = 635 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 15/255 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V+ L+ QV ++ IAEV + K++G Q + +S + S F G Sbjct: 341 QVIQKLD-RRSRQVFVQAMIAEVSANKAKELGVQWGVIAGASNGTLSTVGTFDPFGAVAG 399 Query: 243 GDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +++ F L AL A+ L+ P + + A G Sbjct: 400 LSGALQLADTLGITPPDGGVALFPATLKALHSNGALNVLSTPNIMTSDNKEAEIFVGENV 459 Query: 294 LYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDM 348 + + ++ T S+ D G++L P + I L I E+S G Sbjct: 460 PFLSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYIKLDIYQEISAVKDFGTATNPN 519 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R A T+V + + T+++ GL++D Q + IPLL IP+LG LF+ R R++T Sbjct: 520 LGSTKRSAKTSVVVKNTDTVIIGGLIQDTDQVTESKIPLLGDIPLLGWLFKTKRTTRDKT 579 Query: 409 EIFIAATPFLVKPVA 423 + I TP ++K Sbjct: 580 NLLIMLTPRIIKDAR 594 >gi|254360608|ref|ZP_04976757.1| competence protein E [Mannheimia haemolytica PHL213] gi|153091148|gb|EDN73153.1| competence protein E [Mannheimia haemolytica PHL213] Length = 437 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 100/241 (41%), Gaps = 13/241 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFV 239 +Q+ ++ I + + L+++G + I +G + + + Sbjct: 185 TEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGRLEGNGLNNVTNNLNVNFPIT 244 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 ++ + L ALE+ ++ +A P L + + AS G + Y + Sbjct: 245 GGASAVLQVSSINSRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYN 304 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + AT V + + L P + + +I L + + P + + + ++ +T Sbjct: 305 TKSEATDVEFKEAVLGLEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQ 364 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V G TIVL G+ + Q+ ++ +P+L IP + LF +R + E+ I TP+++ Sbjct: 365 VFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIKRLFSQTRDKISKRELVIFVTPYIL 424 Query: 420 K 420 + Sbjct: 425 Q 425 >gi|227329158|ref|ZP_03833182.1| putative outer membrane porin HofQ [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 424 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 76/437 (17%), Positives = 161/437 (36%), Gaps = 37/437 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M+ L R + L + + A+ + I + +++++ + + Sbjct: 3 MKMLCRVAAWSWLLLLTAPFQASAESSVSMAFEDSPIPRVLQALADHQQLNVVIAPGVTG 62 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + + + D + D+V+ +G+ +V +G ++ + Sbjct: 63 NLSLRLAD--IPWEQALDIVLR-----------MGKLSV---ERNGNVLMVFPADHLESL 106 Query: 121 AHLE----MTLRRFIADSNIRV--------EMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + + NI V E+ + G + + + S + + T L Sbjct: 107 QKERDEHAAEQAQKLPLHNISVALQYADATEVAASVQAQRGTLLSTRGSVTVDKRTNTLL 166 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 + + + L++ QV L I + + L+ +G + Sbjct: 167 IRDTEEALTQL--EPWVKELDLPL-AQVQLAAHIVTISSEHLQALGVNWGLGEGDVANKA 223 Query: 229 SFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 +F + + L+ + L ALE+ + + +A P L Q+A Sbjct: 224 LRLNNFNVGLPVDTPAVNAGFHLARLNGRLLDLELMALEQESQVEIIASPRLFTAHQQTA 283 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-- 343 S G + Y+ S ++G+TS+ + + + TP +L GRI L ++ + P + Sbjct: 284 SIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQ 343 Query: 344 -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + G+ + ++ T V + G TIVL G+ + + +PLL ++P+ G LFRN Sbjct: 344 GDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQQKKNSDRQVPLLGEVPVFGHLFRNHT 403 Query: 403 FNREETEIFIAATPFLV 419 E+ I TP L+ Sbjct: 404 QQHTRRELVIFITPTLI 420 >gi|170018439|ref|YP_001723393.1| general secretion pathway protein D [Escherichia coli ATCC 8739] gi|188495544|ref|ZP_03002814.1| general secretion pathway protein D [Escherichia coli 53638] gi|169753367|gb|ACA76066.1| general secretion pathway protein D [Escherichia coli ATCC 8739] gi|188490743|gb|EDU65846.1| general secretion pathway protein D [Escherichia coli 53638] Length = 654 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249 +G Q + + + G S + Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599 >gi|66043674|ref|YP_233515.1| type II and III secretion system protein:NolW-like:NolW-like [Pseudomonas syringae pv. syringae B728a] gi|63254381|gb|AAY35477.1| type II and III secretion system protein:NolW-like:NolW-like [Pseudomonas syringae pv. syringae B728a] Length = 718 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 105/257 (40%), Gaps = 23/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236 ++++ L+I QV ++ I E D KQ+G + + ++SG K Sbjct: 454 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAG 512 Query: 237 ---------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + V + + L A+E+ +++P + Sbjct: 513 NTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 572 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP Sbjct: 573 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 631 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR Sbjct: 632 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 691 Query: 402 RFNREETEIFIAATPFL 418 + ++E+ + TP + Sbjct: 692 VVSESKSELLVFLTPRI 708 >gi|306816332|ref|ZP_07450470.1| general secretory pathway component, cryptic [Escherichia coli NC101] gi|305850728|gb|EFM51185.1| general secretory pathway component, cryptic [Escherichia coli NC101] Length = 654 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364 Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249 +G Q + + + + + Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599 >gi|270157382|ref|ZP_06186039.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968] gi|269989407|gb|EEZ95661.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968] Length = 701 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 27/262 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241 K++ L++ + QV ++ I EV +D + +G + ++ A+ + V+ Sbjct: 422 KLIKELDVPVK-QVLIEARIVEVTKDFAQDLGIRWGVSKPQHLSGTLAGANQLAQGVAPA 480 Query: 242 ------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 ++ + D + L ALE ++ P L Sbjct: 481 DVTPFTDRLNLDLVAAPLTKANPATVGIALAQLGDNILLDLELSALESEGLAELISSPRL 540 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A SG + Y+ +SS GAT+V + L P + +I + ++ Sbjct: 541 ITANQQPALIDSGQEIPYQQSTSS-GATAVAFKKAVLSLKVIPQITPDNKILMDLKINQD 599 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + +P+ ++ T V + +G TIVL G+ + D + +P ++P++G L Sbjct: 600 LALPNQTYNGVPAIATKEIQTNVLVSNGQTIVLGGIYQQDKSKTITRVPFFGQLPVVGNL 659 Query: 398 FRNSRFNREETEIFIAATPFLV 419 F+N++ E+ I TP ++ Sbjct: 660 FKNTQIGVHNDELLIFITPKII 681 >gi|170719573|ref|YP_001747261.1| type IV pilus secretin PilQ [Pseudomonas putida W619] gi|169757576|gb|ACA70892.1| type IV pilus secretin PilQ [Pseudomonas putida W619] Length = 422 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 97/236 (41%), Gaps = 2/236 (0%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ L++ QV ++ I E D +G + S P+ G Sbjct: 179 QLVAQLDVPVR-QVEIEARIVEANVDYENSLGVRWGPRLYSEAPALGKDVFVDLGMERAG 237 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + + L A+E+ +++P + + ++A G + Y+ + S Sbjct: 238 SSIGFGVLRGGVLLDLELSAMEKTGNGEIISQPKVVTANNETARILKGTEVPYQETTKS- 296 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 GATSVT + + L TP + G++ + ++ EP D+P R + + V + Sbjct: 297 GATSVTFREASLSLEVTPQITPDGKVIMTVKVTKDEPDFVNALNDVPPIRKNEVNAKVRV 356 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 G TIV+ G+ + + +P +P +G LFR +++E+ + TP + Sbjct: 357 ADGETIVIGGVYSTTQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 412 >gi|224823626|ref|ZP_03696735.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002] gi|224604081|gb|EEG10255.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002] Length = 691 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 98/242 (40%), Gaps = 13/242 (5%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKSFAADFGGKFVSE 241 QV ++ I E + +++G + S G+ +G + + Sbjct: 447 KQVVIEARIVEATDNFSRELGVKLSYDRIGRLSLGGNIAGAGNGSLTDTLVNLPTNSAAT 506 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G +V L AL+ + + +A P + A+ G + Y+ +SS Sbjct: 507 GTIGAVYKAGASNLIGLELQALQTESQGKIVASPRVLTSDRTEATIEQGQEIPYQEATSS 566 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 GATS + + L P + I + IQ + +PS + +K +T V Sbjct: 567 -GATSTSFKKAVLSLKVKPQITPDSTILMDIQINNDTADFANLSNGVPSLKTKKVNTQVL 625 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +GGT+V+ G+ D + +PLL IP+LGALFR+ TE+ + TP +V Sbjct: 626 VENGGTVVIGGIYTQDENEGLSKVPLLGDIPLLGALFRSKTKKDNRTELLVFLTPRVVSD 685 Query: 422 VA 423 Sbjct: 686 FD 687 >gi|323934477|gb|EGB30885.1| general secretion pathway protein D [Escherichia coli E1520] Length = 654 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249 +G Q + + + G S + Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599 >gi|289164222|ref|YP_003454360.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae NSW150] gi|288857395|emb|CBJ11223.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae NSW150] Length = 701 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 27/262 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241 K++ L++ + QV ++ I EV +D + +G + ++ A+ + V+ Sbjct: 422 KLIKELDVPVK-QVLIEARIVEVTKDFAQDLGIRWGVSKPQHLSGTLAGANQLAQGVAPA 480 Query: 242 ------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 ++ + D + L ALE ++ P L Sbjct: 481 DVTPFTDRLNLDLVAAPLTKANPATVGIALAQLGDNILLDLELSALESEGLAELISSPRL 540 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A SG + Y+ +SS GAT+V + L P + +I + ++ Sbjct: 541 ITANQQPALIDSGQEIPYQQSTSS-GATAVAFKKAVLSLKVIPQITPDNKILMDLKINQD 599 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + +P+ ++ T V + +G TIVL G+ + D + +P ++P++G L Sbjct: 600 LALPNQTYNGVPAIATKEIQTNVLVSNGQTIVLGGIYQQDKSKTITRVPFFGQLPVVGNL 659 Query: 398 FRNSRFNREETEIFIAATPFLV 419 F+N++ E+ I TP ++ Sbjct: 660 FKNTQIGVHNDELLIFITPKII 681 >gi|293412744|ref|ZP_06655412.1| general secretion pathway protein D [Escherichia coli B354] gi|291468391|gb|EFF10884.1| general secretion pathway protein D [Escherichia coli B354] Length = 650 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249 +G Q + + + G S + Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595 >gi|157162799|ref|YP_001460117.1| general secretion pathway protein D [Escherichia coli HS] gi|157068479|gb|ABV07734.1| general secretion pathway protein D [Escherichia coli HS] Length = 654 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249 +G Q + + + G S + Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599 >gi|331674826|ref|ZP_08375583.1| general secretion pathway protein D [Escherichia coli TA280] gi|331067735|gb|EGI39133.1| general secretion pathway protein D [Escherichia coli TA280] Length = 654 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 58/294 (19%), Positives = 101/294 (34%), Gaps = 26/294 (8%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + ++ + K V+ L+I QV ++ I EV+ Sbjct: 307 SSTSAMDNVAITADEQTNSLVITADQPVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGN 365 Query: 210 LKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKGV 250 +G Q + + + G S + Sbjct: 366 GLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAG 425 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATS 306 + +L AL LA P++ + + ASF G + S + + Sbjct: 426 FFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNT 485 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 486 VERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGE 545 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 546 TVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599 >gi|26249920|ref|NP_755960.1| general secretion pathway protein D [Escherichia coli CFT073] gi|91212762|ref|YP_542748.1| general secretion pathway protein D [Escherichia coli UTI89] gi|117625603|ref|YP_858926.1| putative general secretion pathway protein D precursor [Escherichia coli APEC O1] gi|227883456|ref|ZP_04001261.1| general secretion pathway protein D precursor [Escherichia coli 83972] gi|300979896|ref|ZP_07174772.1| general secretion pathway protein D [Escherichia coli MS 45-1] gi|301046096|ref|ZP_07193274.1| general secretion pathway protein D [Escherichia coli MS 185-1] gi|26110348|gb|AAN82534.1|AE016767_294 Probable general secretion pathway protein D precursor [Escherichia coli CFT073] gi|91074336|gb|ABE09217.1| probable general secretion pathway protein D [Escherichia coli UTI89] gi|115514727|gb|ABJ02802.1| putative general secretion pathway protein D precursor [Escherichia coli APEC O1] gi|227839600|gb|EEJ50066.1| general secretion pathway protein D precursor [Escherichia coli 83972] gi|294492078|gb|ADE90834.1| general secretion pathway protein D [Escherichia coli IHE3034] gi|300301922|gb|EFJ58307.1| general secretion pathway protein D [Escherichia coli MS 185-1] gi|300409407|gb|EFJ92945.1| general secretion pathway protein D [Escherichia coli MS 45-1] gi|307628360|gb|ADN72664.1| general secretory pathway component, cryptic [Escherichia coli UM146] gi|315284600|gb|EFU44045.1| general secretion pathway protein D [Escherichia coli MS 110-3] gi|315292358|gb|EFU51710.1| general secretion pathway protein D [Escherichia coli MS 153-1] gi|323950239|gb|EGB46121.1| general secretion pathway protein D [Escherichia coli H252] gi|323954552|gb|EGB50335.1| general secretion pathway protein D [Escherichia coli H263] Length = 654 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364 Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249 +G Q + + + + + Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599 >gi|218560386|ref|YP_002393299.1| general secretory pathway component, cryptic [Escherichia coli S88] gi|218367155|emb|CAR04929.1| general secretory pathway component, cryptic [Escherichia coli S88] gi|307555412|gb|ADN48187.1| general secretory pathway component [Escherichia coli ABU 83972] Length = 650 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 302 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360 Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249 +G Q + + + + + Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595 >gi|311277674|ref|YP_003939905.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1] gi|308746869|gb|ADO46621.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1] Length = 412 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 81/396 (20%), Positives = 153/396 (38%), Gaps = 45/396 (11%) Query: 63 PVDVQDVLVSDPTKADVV----VHSPRTMYLFGKNVGQANV------------ILIGHDG 106 V+ + V + A V+ R + + + G ++ ++ G Sbjct: 20 KVNAVTLTVDEVPVAQVLQTLAALDGRNIVIGPEVDGVLSLQLTNIPWMQALQTVLSSAG 79 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 M + ++ + + + E T+ L G A EL++ Sbjct: 80 LTMTSQGAVLFIHSHAWQEAKQSRLETEQ---EKRRQTLPLRGQ-SIALRYADAGELAKA 135 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGED------------------QVTLKVTIAEVRRD 208 + + + K N L + ++ QV L I + Sbjct: 136 --GEKLLSPRGAMTVDKRTNRLLVRDDERHLSDIQTWAEEMDKPVGQVELAAHIVTMNEK 193 Query: 209 ILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 L+++G + ++ + S P + + + G ++ E L ALE+ Sbjct: 194 SLRELGVKWTLADADSPPGRGKFTTLSSDLSVTDATSRAGFNIGRINGRLLEFELSALEQ 253 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + +A P L A Q AS G + Y+ S +GATSV + + + TPTVL Sbjct: 254 QQQLEIIASPRLLASHLQPASIKQGSEIPYQVSSGDSGATSVEFKEAVLGMEVTPTVLDD 313 Query: 326 GRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 R+ L+++ + P V+ G++ + ++ +T VE+ SG T+ L G+ + ++ Sbjct: 314 RRVRLKLRISENMPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSQKNKSARD 373 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GIPLL IP LG LFR+ + E E+ + TP ++ Sbjct: 374 GIPLLGDIPWLGQLFRHDGKDHERRELVVFITPRII 409 >gi|324111701|gb|EGC05681.1| type IV pilus secretin PilQ [Escherichia fergusonii B253] Length = 412 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 81/417 (19%), Positives = 150/417 (35%), Gaps = 29/417 (6%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISI--GLNKVIILQVPVDVQDVLVSDPTK 76 + + LP + A A + + + + + + I+ P V + Sbjct: 6 AAILMMALPVAQAAKPAKVTLVVDDAPVAQVLQALAEQERQNIVVSPDVSGLVSLHLIDV 65 Query: 77 -----ADVVVHSPRTMYLFGKNVGQA---NVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 VV S L + G + ++ + +E Sbjct: 66 PWKQALQTVVKSAG---LVSRQEGNILHIHSAAWQNENAARQEAEQARRLASLPVEHRAI 122 Query: 129 RFIADSNIRVEMVSDTVV-LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + ++ G + + R + N+ A ++ + ++ Sbjct: 123 ALQYADAAELAKAGGKLLSAKGSMTVDTRTNRLL---------LRDNKTALAALEHWISE 173 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 +++ QV L I + L+++G + + + V Sbjct: 174 MDVP-VGQVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTTLSSDLAVATATTQV 232 Query: 248 K---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 G ++ + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ V V+ + G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGEVLTIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + K+ IPLL IP LG LF + E E+ + TP LV Sbjct: 353 KSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENERRELVVFITPRLV 409 >gi|333013071|gb|EGK32447.1| transport protein hofQ [Shigella flexneri K-227] Length = 386 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + +I ++ + + + Sbjct: 66 HSIAWQNDNIARQESEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|323174021|gb|EFZ59649.1| transport protein hofQ [Escherichia coli LT-68] Length = 386 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 71/331 (21%), Positives = 132/331 (39%), Gaps = 12/331 (3%) Query: 100 ILIGHDGKQMLNLDILIERDI----AHLEMTLRRFIADSN--IRVEMVSDTVVLHGMVRT 153 ++ +G + I + + + + + N I ++ + + Sbjct: 54 LITRQEGNILSVHSIAWQNNNIARQEAEQARAQANLPLENCSITLQYADAGELAKAGEKL 113 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + T N+ A S+ ++ + +++ QV L I + L+++ Sbjct: 114 LSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLREL 172 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIR 270 G + ++ + G V G ++ + L ALE+ + Sbjct: 173 GVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLD 232 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 +A P L A Q AS G + Y+ S +GATSV + + + TPTVL GRI L Sbjct: 233 IIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRL 292 Query: 331 RIQ--TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 ++ V V+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL Sbjct: 293 KLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLL 352 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP G LFR+ E E+ + TP LV Sbjct: 353 GDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|331684967|ref|ZP_08385553.1| general secretion pathway protein D [Escherichia coli H299] gi|331077338|gb|EGI48550.1| general secretion pathway protein D [Escherichia coli H299] Length = 654 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249 +G Q + + + G S + Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599 >gi|302189475|ref|ZP_07266148.1| type II and III secretion system protein:NolW-like:NolW-like [Pseudomonas syringae pv. syringae 642] Length = 701 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 104/257 (40%), Gaps = 23/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236 ++++ L+I QV ++ I E D KQ+G + + SG S A Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGRTNISGTSNWSAGGLDNRGDEAG 495 Query: 237 ---------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + V + + L A+E+ +++P + Sbjct: 496 NTGNSLGPNIPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674 Query: 402 RFNREETEIFIAATPFL 418 + ++E+ + TP + Sbjct: 675 VVSESKSELLVFLTPRI 691 >gi|323142233|ref|ZP_08077067.1| bacterial type II/III secretion system short domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413296|gb|EFY04181.1| bacterial type II/III secretion system short domain protein [Phascolarctobacterium sp. YIT 12067] Length = 364 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 7/239 (2%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QVTL+ I V R+ K +G + ++ D F Sbjct: 113 ATRQVTLEAKIIAVSREDSKNMGVRWDWDTIPQRAQETNNGDSDSSNYDGSFKFWRGFAF 172 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTT 309 F L+AL + R LA P + I G+ AS G +T SS T+ Sbjct: 173 ---RFNATLNALINSGKARILATPRIITIPGKEASIFIGDHIPVQTEKHDSSGSYTATEY 229 Query: 310 HDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 D G+ L + P + G+ + + TEVS PV+ ++ R ADT V + SG T+ Sbjct: 230 LDAGIKLQYAPIISEDGKMVTASVHTEVSTPVL-ISELKNYRITSRTADTNVRMYSGETL 288 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 V+ GL+ ++ Q+ + +P LSKIP+LG LF+N + +TE+ + TP + + A + Sbjct: 289 VIGGLISEEQQRTMQKVPFLSKIPLLGELFKNRSRSHNKTEVLLLLTPHITEAGASPAI 347 >gi|149378291|ref|ZP_01896001.1| Type II secretory pathway, component PulD [Marinobacter algicola DG893] gi|149357425|gb|EDM45937.1| Type II secretory pathway, component PulD [Marinobacter algicola DG893] Length = 650 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 88/468 (18%), Positives = 163/468 (34%), Gaps = 69/468 (14%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN-----KVIILQVPVDV 66 + L L + ANA +++ I + ++I L+ +V ++Q+ Sbjct: 142 LVPILRPLVAKYGHLAGVAAANALIVSDHSSNIQRIEQIVRELDSPSKYEVEVIQLEEAW 201 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDILIERDIA 121 V D + +P + G+ G +V + +L D + Sbjct: 202 ----VGD-MVELLQELAPAEL---GQGGGDNAARKYSVTADERSNRLILRGDETFRDKMR 253 Query: 122 HLEMTLRRFIADSNIR-------VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 L L + A + + T +L G++ + + SGRN Sbjct: 254 ELIRKLDQPSATGGTTKVIRLSHADAENLTEILKGVMGEVVKESSGGSGGAGGSAGSGRN 313 Query: 175 QYANSSSKKVMNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGFQ 216 + + + +N L + G QV ++ I E+ ++ + +G Q Sbjct: 314 TNFSVFADEGLNALVVRGEPSMMQEAEMIVKALDVRRAQVMIEAAIVEISDELGQDLGVQ 373 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-------------------DRFSFE 257 ++ S + +F S G + S+ Sbjct: 374 LALGDESGESTPVAGTNFNNVGRSLGDVLGAILSDSVIAPATGGITIGAGQRNENGVSWG 433 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTH 310 +L AL + A L+ P++ + Q + G ++T S+ T++ Sbjct: 434 VLLQALSTSAAANLLSTPSIITLDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERR 493 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 D G+ L TPT+ + G + L ++ V + R+ TTV G TIVL Sbjct: 494 DIGLTLKVTPTISADGLVRLVVEQTTENIGDSVESASDIITNKREIKTTVLADDGETIVL 553 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 GL DD+Q K +PLL IP+LG LF + R + + + P + Sbjct: 554 GGLTTDDLQVNKSKVPLLGDIPVLGRLFSSESERRVKRNLLVFLRPTI 601 >gi|88861010|ref|ZP_01135645.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas tunicata D2] gi|88816938|gb|EAR26758.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas tunicata D2] Length = 659 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 58/307 (18%), Positives = 116/307 (37%), Gaps = 48/307 (15%) Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 + V+ ++T+++ ++I++ +R VE + + Q Sbjct: 378 VSVDTRTNTLLIKDTAKSIENVRRMVETLDVAV-------------------------KQ 412 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------------------FAADFG 235 V ++ + VR + + +G + + + + Sbjct: 413 VVIESRMVTVRDSVQEDLGIRWGFSDQQLTDGIAGTLAGAQKISNGVIPTLAERLNVNLA 472 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + + + D + L ALE+ +A P +T + + A G + Y Sbjct: 473 VTNPAGSIGMHIAKLADGTLIDLELSALEQENKAEIIASPRITTANQKKARIEQGTEIPY 532 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRV 353 +SS GAT+V + L TP + ++ L + P + G+ + Sbjct: 533 VQAASS-GATTVEFKKAVLSLEVTPHITPDNKVILDLVITQDTPGDTVQTPTGNAVAINT 591 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 ++ T V + +G TIVL G+ + + +PLL IP LGALF+ + E+ E+ I Sbjct: 592 QEIRTQVLVENGQTIVLGGIYQQQVINSSSKVPLLGDIPYLGALFKRTSEKTEKKELLIF 651 Query: 414 ATPFLVK 420 TP ++K Sbjct: 652 VTPKILK 658 >gi|89110685|ref|AP_004465.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. W3110] gi|90111569|ref|NP_417784.4| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. MG1655] gi|170082844|ref|YP_001732164.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. DH10B] gi|238902416|ref|YP_002928212.1| general secretory pathway component, cryptic [Escherichia coli BW2952] gi|256025947|ref|ZP_05439812.1| general secretory pathway component, cryptic [Escherichia sp. 4_1_40B] gi|300932218|ref|ZP_07147497.1| general secretion pathway protein D [Escherichia coli MS 187-1] gi|300946547|ref|ZP_07160812.1| general secretion pathway protein D [Escherichia coli MS 116-1] gi|300954740|ref|ZP_07167173.1| general secretion pathway protein D [Escherichia coli MS 175-1] gi|301643855|ref|ZP_07243886.1| general secretion pathway protein D [Escherichia coli MS 146-1] gi|14917006|sp|P45758|GSPD_ECOLI RecName: Full=Probable general secretion pathway protein D; Flags: Precursor gi|85676716|dbj|BAE77966.1| general secretory pathway component, cryptic [Escherichia coli str. K12 substr. W3110] gi|87082242|gb|AAC76350.2| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. MG1655] gi|169890679|gb|ACB04386.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. DH10B] gi|238861291|gb|ACR63289.1| general secretory pathway component, cryptic [Escherichia coli BW2952] gi|260447656|gb|ACX38078.1| general secretion pathway protein D [Escherichia coli DH1] gi|300318291|gb|EFJ68075.1| general secretion pathway protein D [Escherichia coli MS 175-1] gi|300453793|gb|EFK17413.1| general secretion pathway protein D [Escherichia coli MS 116-1] gi|300460042|gb|EFK23535.1| general secretion pathway protein D [Escherichia coli MS 187-1] gi|301077758|gb|EFK92564.1| general secretion pathway protein D [Escherichia coli MS 146-1] gi|309703737|emb|CBJ03078.1| probable general secretion pathway protein D precursor [Escherichia coli ETEC H10407] gi|315618942|gb|EFU99525.1| general secretion pathway protein D [Escherichia coli 3431] Length = 650 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249 +G Q + + + G S + Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595 >gi|254163253|ref|YP_003046361.1| general secretory pathway component, cryptic [Escherichia coli B str. REL606] gi|253975154|gb|ACT40825.1| general secretory pathway component, cryptic [Escherichia coli B str. REL606] Length = 650 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249 +G Q + + + G S + Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595 >gi|110643564|ref|YP_671294.1| general secretion pathway protein D precursor [Escherichia coli 536] gi|191171536|ref|ZP_03033084.1| general secretion pathway protein D [Escherichia coli F11] gi|300974004|ref|ZP_07172411.1| general secretion pathway protein D [Escherichia coli MS 200-1] gi|331649123|ref|ZP_08350209.1| general secretion pathway protein D [Escherichia coli M605] gi|331659615|ref|ZP_08360553.1| general secretion pathway protein D [Escherichia coli TA206] gi|110345156|gb|ABG71393.1| probable general secretion pathway protein D precursor [Escherichia coli 536] gi|190908163|gb|EDV67754.1| general secretion pathway protein D [Escherichia coli F11] gi|281180360|dbj|BAI56690.1| general secretion pathway protein D [Escherichia coli SE15] gi|300309014|gb|EFJ63534.1| general secretion pathway protein D [Escherichia coli MS 200-1] gi|312947876|gb|ADR28703.1| general secretion pathway protein D precursor [Escherichia coli O83:H1 str. NRG 857C] gi|315298623|gb|EFU57878.1| general secretion pathway protein D [Escherichia coli MS 16-3] gi|324009016|gb|EGB78235.1| general secretion pathway protein D [Escherichia coli MS 57-2] gi|324014941|gb|EGB84160.1| general secretion pathway protein D [Escherichia coli MS 60-1] gi|330909367|gb|EGH37881.1| general secretion pathway protein D [Escherichia coli AA86] gi|331041621|gb|EGI13765.1| general secretion pathway protein D [Escherichia coli M605] gi|331052830|gb|EGI24863.1| general secretion pathway protein D [Escherichia coli TA206] Length = 654 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364 Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249 +G Q + + + + + Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599 >gi|218691610|ref|YP_002399822.1| general secretory pathway component, cryptic [Escherichia coli ED1a] gi|218429174|emb|CAR10129.2| general secretory pathway component, cryptic [Escherichia coli ED1a] gi|222035034|emb|CAP77777.1| general secretion pathway protein D [Escherichia coli LF82] Length = 650 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 302 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360 Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249 +G Q + + + + + Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595 >gi|255658549|ref|ZP_05403958.1| putative type IV pili biogenesis protein PilQ [Mitsuokella multacida DSM 20544] gi|260849353|gb|EEX69360.1| putative type IV pili biogenesis protein PilQ [Mitsuokella multacida DSM 20544] Length = 430 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 84/398 (21%), Positives = 148/398 (37%), Gaps = 45/398 (11%) Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRT--------------MYLFGKNVGQANVIL 101 + ++L + + +V D + A V + L G ++ Sbjct: 38 RSVLLSLARTAHENIVLDDSVAGTVTLHATEEPAKLLRMIAASKGLVLI--KEGSTYLVT 95 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + ++ + R + + ++ V+ G Sbjct: 96 TMPRADALRSVHVYPVRHADP-----ADLAHAAELSLKSVAGDKTADGQETGTARRVLVD 150 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + + L + AN + KV+ L+ QV+L+ + + +D K++G + + Sbjct: 151 SATNSVLFYGTAAEAANVA--KVVQQLD-RKPRQVSLEAKVLALSKDASKKLGVEWQWSS 207 Query: 222 SSSGPSKSFA------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 P G +GV F + + AL Sbjct: 208 LPQYPDFETTYRHKGSANEVQEKEIKRHTQDGTVPGIIQFGRGPEGVPFEFYYSATIQAL 267 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHDYGVVLHFTPT 321 + LA P +T + G+ A GG+ T V+++T T+ T G++L TP Sbjct: 268 VTQGKAKMLARPNITTVQGREALINIGGEVPVPTQSVTNNTTTTTYTYRQAGIILRCTPR 327 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + GRI + TEVS P+ V ++ R ADTTV L G T+V+ GL+ D + Sbjct: 328 IHEDGRITATVHTEVSSPLY-VEDIKAYRFQNRSADTTVSLRDGETMVIGGLIGSDESRT 386 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP L +PILG+ FR+ R +R E+EI I T ++ Sbjct: 387 LSKIPFLGDLPILGSFFRSVRQSRSESEIMIFLTAHVI 424 >gi|323164950|gb|EFZ50741.1| transport protein hofQ [Shigella sonnei 53G] Length = 385 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + + +I ++ + + + Sbjct: 65 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 124 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 125 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 183 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 184 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 243 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 244 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 303 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 304 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 363 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 364 DGKEDERRELVVFITPRLV 382 >gi|271502312|ref|YP_003335338.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586] gi|270345867|gb|ACZ78632.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586] Length = 433 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 76/397 (19%), Positives = 147/397 (37%), Gaps = 40/397 (10%) Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 V VQ VL + AD + + + G ++ L +Q L++ + + + Sbjct: 40 DVPVQRVLQA---LADHQQLN---LVVAPGVAGNISLNLQQVPWQQALDIILRMGQLTVE 93 Query: 123 LEMTLRRFIADSNIR---------VEMVSDTVVLHGMVRTIQDSQRAVELSE-TFLSQSG 172 + ++ D+ ++ + L + T+Q ++ ++ + Sbjct: 94 QQNSVMMVYPDTYVKDRQQKQEELAAKQRLQLPLQNLSVTLQYAEATEVVANLQSQRGTL 153 Query: 173 RNQYANSSSKKVMNLLNIAGED------------------QVTLKVTIAEVRRDILKQIG 214 + N + K N L I QV L I + + LK +G Sbjct: 154 LTERGNVTVDKRTNTLLIRDVASALEQIRPWIDALDKPLSQVQLAAHIVTISSEHLKALG 213 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRT 271 + +S +F E + L+ + L ALE+ + Sbjct: 214 VNWGLGEASIAGQAMQMNNFTVNLPVESPAINAGFHLAKLNGRLLDLELMALEQENEVEI 273 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G + Y+ S ++G+TS+ + + + TP +L G+I L Sbjct: 274 IASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPRILHGGQITLN 333 Query: 332 IQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + + P + G++ + ++ T V + G TIVL G+ + Q + +P L Sbjct: 334 LLISQNMPGRAIKQGEGGEILAIDKQEIQTQVTVQDGETIVLGGIFQQQKNQGERQVPGL 393 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +P +G LFR + E+ I TP L++ Sbjct: 394 GALPGIGRLFRATSQQHTRRELVIFITPTLIQAAKRA 430 >gi|297519102|ref|ZP_06937488.1| outer membrane porin HofQ [Escherichia coli OP50] gi|300907468|ref|ZP_07125113.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1] gi|300931080|ref|ZP_07146434.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1] gi|301302267|ref|ZP_07208399.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1] gi|300400806|gb|EFJ84344.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1] gi|300461100|gb|EFK24593.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1] gi|300842430|gb|EFK70190.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1] gi|315255979|gb|EFU35947.1| type IV pilus secretin PilQ [Escherichia coli MS 85-1] gi|320199559|gb|EFW74149.1| Type IV pilus biogenesis protein PilQ [Escherichia coli EC4100B] gi|323154220|gb|EFZ40423.1| transport protein hofQ [Escherichia coli EPECa14] gi|323162775|gb|EFZ48612.1| transport protein hofQ [Escherichia coli E128010] Length = 386 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + + +I ++ + + + Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|238752500|ref|ZP_04613975.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380] gi|238709263|gb|EEQ01506.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380] Length = 625 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 111/282 (39%), Gaps = 18/282 (6%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 +I+ ++ L T + + + +KV+ L++ QV ++ I E + Sbjct: 291 SIKAHEQTNSLVITAVPKIMKEL------EKVIEKLDVR-RAQVLVEAIIVETQNGEGLN 343 Query: 213 IGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 +G Q + S + + + + +++ + AL + Sbjct: 344 LGIQWANKFYGGVNFLPKPDSIKDNKSSENPVPMLITGLTAGFYKGNWDGLFTALATNSN 403 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLS 324 LA P++ + A F G + T + +T S++ GV+L P + Sbjct: 404 NNILATPSIVTLDNMEAEFNVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINK 463 Query: 325 PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + L I+ EVS + + R + V + SG T+V+ GLL I + Sbjct: 464 GDSVLLEIRQEVSSIADNSDINTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKINKT 523 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +P L IP++GALFR S+ E++ + + P +++ + Sbjct: 524 INKVPFLGDIPLIGALFRQSKERMEKSNLILFIKPTILRETS 565 >gi|289806224|ref|ZP_06536853.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 295 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 6/252 (2%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ + Sbjct: 42 DNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVT 100 Query: 233 DFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 V G ++ + L ALE+ + +A P L A Q AS Sbjct: 101 TLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 160 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ V V+ G+ Sbjct: 161 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 220 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 221 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 280 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 281 RELVVFITPRLV 292 >gi|237798101|ref|ZP_04586562.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020953|gb|EGI01010.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 701 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 107/257 (41%), Gaps = 23/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------------K 228 ++++ L+I QV ++ I E D KQ+G + + SG S Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGRTNLSGSSKWSAGGLDNNGDEAG 495 Query: 229 SFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + G + + V + + L A+E+ +++P + Sbjct: 496 NTGNNLGPNIPFVDLGAANATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674 Query: 402 RFNREETEIFIAATPFL 418 + ++E+ + TP + Sbjct: 675 VVSESKSELLVFLTPRI 691 >gi|28872241|ref|NP_794860.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato str. DC3000] gi|213969446|ref|ZP_03397583.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato T1] gi|28855495|gb|AAO58555.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato str. DC3000] gi|213925817|gb|EEB59375.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato T1] Length = 718 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 134/352 (38%), Gaps = 30/352 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 362 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 418 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 419 TSAESKAEERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 477 Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246 D KQ+G + + ++S + A+ Sbjct: 478 DYNKQLGVRWGGSTNTSRNGKWTTYGLDDNGDEGGNTNANLTSNIPFVDLGAADATTGIG 537 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + L A+E+ +++P + ++A G + Y+ SS+GAT+ Sbjct: 538 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 596 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V+ + + L TP + RI + ++ EP +P + + + V + G Sbjct: 597 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 656 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP + Sbjct: 657 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 708 >gi|325265676|ref|ZP_08132365.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394] gi|324982807|gb|EGC18430.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394] Length = 705 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 97/264 (36%), Gaps = 29/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSGPSK------ 228 ++++ L++ + QV ++ I E + + +G + GS+ G Sbjct: 434 QRLIEELDVPAK-QVMVEARIVEAADGVARDLGVKFGANRQGSTSWGSNWGNGVEANRRY 492 Query: 229 -------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 +FA + S +V + L A+E +T++ P Sbjct: 493 VGNGTGSGSNGGVNFAPNVNLPVSSATSSIAVIRSWASGALGLELSAMETDNLTKTISTP 552 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + + A G Q Y S G + + D + L TP + +I L I Sbjct: 553 RVLTQDRKEAEIRQGTQIPYT-TRGSNGEVTTSFKDAILSLKVTPRITPDSKIILDITIN 611 Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EP VN P R T + GGT+V+ G+ ++ + +P L IP+L Sbjct: 612 KDEPDYTRVNVEGEPGITTRAVKTQAMIEDGGTLVVGGIYQEQMSNNISKVPFLGDIPVL 671 Query: 395 GALFRNSRFNREETEIFIAATPFL 418 G LF++ + E+ TP + Sbjct: 672 GNLFKSRSRSHTRNELLFFITPRI 695 >gi|113869383|ref|YP_727872.1| pili assembly protein PilQ [Ralstonia eutropha H16] gi|113528159|emb|CAJ94504.1| pili assembly protein PilQ [Ralstonia eutropha H16] Length = 706 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 24/289 (8%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDI 209 + + R L+ + S ++V N + QV ++ I E Sbjct: 414 ASARMLSRRGSLTADARTNQLFVSDIASKLEEVQNFIGKIDIPVRQVIIEARIVEATDSF 473 Query: 210 LKQIGFQHSITG-------------------SSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + +G + G S +GP S A S+ Sbjct: 474 SRNLGVKLGFAGQYNNARVGNTYNNVLPGATSDNGPFLSLPAGAINGTNPANIAVSLFNS 533 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L ALE + ++ P + + A G + Y+ +SS GATSV Sbjct: 534 AATKFLALELSALEADGKGKIISSPRVVTANNIKALIEQGTELPYQAATSS-GATSVQFR 592 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + L TP + G + L +V++ +G+ + + T V + +GGT+V+ Sbjct: 593 KANLKLEVTPQITPEGNVLLD--VDVNKDSVGIQTTSGFAIDTKHVQTQVLVENGGTVVI 650 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ + +PLL IP+LG LF+N+ R TE+ + TP ++ Sbjct: 651 GGIYTQTESNETDKVPLLGDIPVLGYLFKNNAKVRNRTELLVFLTPRIL 699 >gi|332345342|gb|AEE58676.1| transport protein PilQ [Escherichia coli UMNK88] Length = 386 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + + +I ++ + + + Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|238927984|ref|ZP_04659744.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas flueggei ATCC 43531] gi|238883944|gb|EEQ47582.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas flueggei ATCC 43531] Length = 428 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 75/335 (22%), Positives = 130/335 (38%), Gaps = 18/335 (5%) Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + + + + L V + + G + + Sbjct: 96 VHDAQRRVHTYTVRYADPEELAHAANLSLTGEGKRAIVSKPNKDIGESGDQSSDVQRRVL 155 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V+ + L G A + + V L QV+L+ + V + K++G S + Sbjct: 156 VDTATNTLLFYGTESEAFAVREIVSALD--TAPRQVSLEARVVAVSKRAAKELGVDWSWS 213 Query: 221 G---------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERAT 267 S+G + G S G + F + + AL Sbjct: 214 SLPQYPNVTRDSAGNWHVSGRNAGTAGRSAPGVIRFGRGPEGLPYEFYYSAAIRALITEG 273 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325 + LA P +T + G+ A G + V++S T+ + + G++L +TP V + Sbjct: 274 KAKMLARPNVTTVQGREALINIGAEVPVPVVTTSNNVTTTGIEYREAGIILRYTPRVTAD 333 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G I + TEVS PV V+ ++ R ADTTV L +G T+V+ GL+ D + I Sbjct: 334 GNIVAHVHTEVSTPVF-VDDLKAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRTLAKI 392 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 P L +P+LGA FR R ++ E+E+ I T ++ Sbjct: 393 PFLGDLPLLGAFFRTVRTSKNESELMIFLTAHVLD 427 >gi|109896995|ref|YP_660250.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c] gi|109699276|gb|ABG39196.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c] Length = 580 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 67/350 (19%), Positives = 132/350 (37%), Gaps = 25/350 (7%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + G +I + + + +A L + + + + + V+ +L Sbjct: 227 RLEGNILLIAPSEELASRETQQLQNRQQVAQLAPLISANLQINYAKAKEVAG--ILKNTD 284 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 +I + +V + E + R+ + + + QV ++ + VR + + Sbjct: 285 SSILSPRGSVAVDERTNTVLLRDTQTSIDEARKLIRALDIPVKQVLIESRMVTVRDNAGE 344 Query: 212 QIGFQHSITGSSSGPSKS--------------------FAADFGGKFVSEGGDFSVKGVL 251 Q+G + + +S + S + + V ++ Sbjct: 345 QLGVRWGFSNNSGDTATSGSIEGADTLSSGVVPSIDNRLNVNLPVTNPAGSIGIQVARLV 404 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + L ALE +A P +T + + A G + Y +SS GATSV Sbjct: 405 DGTILDLELSALESENKGEVIASPRITVANQREAYIEQGTEIPYVQSTSS-GATSVEFKK 463 Query: 312 YGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + L TP + RI L + + + + G + ++ T V + +G TIV Sbjct: 464 AVLSLKVTPHITPDHRIILDLVVTQDTRGDTVNTSTGLAVAIDTQEISTQVLVNNGETIV 523 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + +PLL IP+LG LF+N++ E+ E+ I TP ++ Sbjct: 524 LGGIFQQTTTDDVSQVPLLGDIPVLGHLFKNTQTVNEKRELLIFVTPKIL 573 >gi|311695246|gb|ADP98119.1| type II and III secretion system protein [marine bacterium HP15] Length = 663 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 86/461 (18%), Positives = 159/461 (34%), Gaps = 59/461 (12%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVL 70 + L L + ANA +I+ I + ++I L+ +V V +Q+ Sbjct: 156 LVPILRPLVAKYGHLAGVAAANALIISDHSSNIQRIEQIVRELDSPSKYEVEVIQLQEAW 215 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDILIERDIAHLEM 125 V D + +P + G+ G +V + +L D + L Sbjct: 216 VGD-MVTLLQELAPDEL---GRAGGDNAARKYSVTADERSNRLILRGDETFREKMRGLIR 271 Query: 126 TLRRFIADSNIR-------VEMVSDTVVLHGMV---------------RTIQDSQRAVEL 163 L + A + + T +L G++ Q S Sbjct: 272 QLDQPSATGGTTKVLRLKHADAKNLTEILKGVMGELVKEGTGSGSGGAAKPQSSFAVFAD 331 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +++++ L++ QV ++ I E+ ++ + +G Q ++ S Sbjct: 332 EGLNALVVRGEPSLMQEAEQIVAALDVR-RAQVMIEAAIVEISDELGQDLGVQVAVGDES 390 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVL-------------------DRFSFETVLHALE 264 + +FG S G S + S+ +L AL Sbjct: 391 GESTPVAGTNFGNVGRSLGEVLSAILTGSAITPATGGITIGAGQRNENGVSWGVLLQALS 450 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLH 317 + A L+ P++ + Q + G ++T S+ T++ D G+ L Sbjct: 451 TSAAANLLSTPSIITLDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERRDIGLTLK 510 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TPT+ + G + L ++ + R+ TTV G TIVL GL +DD Sbjct: 511 VTPTISADGLVRLVVEQTTESVADSIENASDIVTNKREIKTTVLADDGETIVLGGLTRDD 570 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 Q K +PLL IP +G LF + R + + + P + Sbjct: 571 YQVNKSKVPLLGDIPFVGRLFSSESERRVKRNLLVFLRPKI 611 >gi|300815414|ref|ZP_07095639.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1] gi|300919331|ref|ZP_07135842.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1] gi|300926924|ref|ZP_07142688.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1] gi|300946869|ref|ZP_07161109.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1] gi|300956717|ref|ZP_07168988.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1] gi|301329693|ref|ZP_07222442.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1] gi|301645828|ref|ZP_07245743.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1] gi|309794656|ref|ZP_07689078.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7] gi|110616771|gb|ABF05438.1| putative transport portein [Shigella flexneri 5 str. 8401] gi|300316473|gb|EFJ66257.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1] gi|300413587|gb|EFJ96897.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1] gi|300417082|gb|EFK00393.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1] gi|300453478|gb|EFK17098.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1] gi|300532306|gb|EFK53368.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1] gi|300844205|gb|EFK71965.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1] gi|301075906|gb|EFK90712.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1] gi|308121706|gb|EFO58968.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7] gi|315619010|gb|EFU99593.1| transport protein hofQ [Escherichia coli 3431] gi|320181878|gb|EFW56784.1| Type IV pilus biogenesis protein PilQ [Shigella boydii ATCC 9905] gi|323182850|gb|EFZ68251.1| transport protein hofQ [Escherichia coli 1357] gi|332085536|gb|EGI90702.1| transport protein hofQ [Shigella boydii 5216-82] Length = 386 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + + +I ++ + + + Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|119470430|ref|ZP_01613158.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonadales bacterium TW-7] gi|119446355|gb|EAW27631.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonadales bacterium TW-7] Length = 697 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 122/326 (37%), Gaps = 49/326 (15%) Query: 116 IERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 E L+ + I ++ V+ ++T+++ V++I++ +R Sbjct: 395 AEDFADLLKTDINSIITPRGSVSVDQRTNTLLVKDTVKSIENIRRM-------------- 440 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----- 229 + L+I QV ++ + VR ++ + +G + + S Sbjct: 441 ----------IETLDIP-VQQVVIESRMVTVRDNVTEDLGVRWGFSDQQGSDGISGSLEG 489 Query: 230 ---------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + + + + + L ALE +A Sbjct: 490 AETISNGVIPDLTDRLNVNLPITNPAASIGLHIAKLANGTLIDLELSALEEENKGEIIAS 549 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + A + Q A G + Y +SS GAT+V+ + L TP + ++ L + Sbjct: 550 PRIIAANQQKARIEQGTEIPYTESASS-GATTVSFKKAVLSLEVTPHITPDNKVILDLII 608 Query: 335 EVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 V+ G+ S ++ T V + +G TIVL G+ + I +P+L IP Sbjct: 609 TQDTRGDVVQTGTGEAVSIDTQEIQTQVLVENGQTIVLGGIFQQQIINTTNKVPVLGDIP 668 Query: 393 ILGALFRNSRFNREETEIFIAATPFL 418 +G LF+++ E+ E+ I TP + Sbjct: 669 YVGRLFKSTSEFNEKRELLIFVTPKI 694 >gi|301023148|ref|ZP_07186952.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1] gi|299880971|gb|EFI89182.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1] Length = 389 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + + +I ++ + + + Sbjct: 69 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 128 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 129 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 187 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 188 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 367 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 368 DGKEDERRELVVFITPRLV 386 >gi|289648291|ref|ZP_06479634.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. aesculi str. 2250] Length = 701 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 63/352 (17%), Positives = 133/352 (37%), Gaps = 30/352 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGG---------------------KFVSEGGDFS 246 D KQ+G + + ++SG K Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIG 520 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + L A+E+ +++P + ++A G + Y+ SS+GAT+ Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V+ + + L TP + RI + ++ EP +P + + + V + G Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGE 639 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP + Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691 >gi|259907443|ref|YP_002647799.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96] gi|224963065|emb|CAX54548.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96] gi|283477275|emb|CAY73191.1| Type II secretion system protein outD [Erwinia pyrifoliae DSM 12163] Length = 645 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 63/392 (16%), Positives = 132/392 (33%), Gaps = 24/392 (6%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 + ++ AD + + G + + ++ Sbjct: 205 ASAPQVAEILNFINGDSKKTGSNKPFAK------AVADTRT---NAVLITGDELARQQLV 255 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 D + +L+ + + V + ++ Sbjct: 256 --DAARNLDEEKDRSSNSRVFYLKHAKAENLLEVLSGVSSTMQDKSESKTASPVAMTKDI 313 Query: 161 VELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V ++T + N + ++++ L+I+ QV ++ I EV+ +G Q Sbjct: 314 VVKADTHTNSLIINAPPDVMGDLEEIITQLDIS-RAQVQVEAIIVEVQDADGLALGVQWF 372 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERATAIRTLA 273 + A S + ++ + +AL+ + LA Sbjct: 373 NKNGGGTQFPAADAPVSNLIGSTVAETLSKANGLAAGFYHGNWAGLFNALQTNSQNNILA 432 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIG 329 P++ + A FT G T S +T SV G+ L P + + Sbjct: 433 TPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVFNSVDRKSVGIKLKVKPQINKGDSVL 492 Query: 330 LRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + I+ EVS + + ++ R TV + SG T+V+ GLL +++ +P+L Sbjct: 493 MEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVLVESGKTVVVGGLLDTTHNKVESSVPVL 552 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 KIP+LGALFR + + + + + P +++ Sbjct: 553 GKIPLLGALFRYTTDKQSKRNLMLFIRPTIIR 584 >gi|131592|sp|P15644|GSPD_KLEPN RecName: Full=General secretion pathway protein D; AltName: Full=Pullulanase secretion envelope pulD; Flags: Precursor gi|7246031|gb|AAA25126.2| pulD (ttg start codon) [Klebsiella pneumoniae] Length = 660 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 118/312 (37%), Gaps = 38/312 (12%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192 VL G+ T+Q ++A + + +++ ++V+ L+I Sbjct: 285 VLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 344 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------- 242 QV ++ IAEV+ +G Q + + + Sbjct: 345 P-QVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSS 403 Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + + ++ +L AL +T LA P++ + A+F G + Sbjct: 404 SLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPV 463 Query: 296 KTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDM 348 T S +T +V G+ L P + + L I+ EVS + ++ Sbjct: 464 LTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLG 523 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ R + V + SG T+V+ GLL + + +PLL IP++GALFR++ + Sbjct: 524 ATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKR 583 Query: 409 EIFIAATPFLVK 420 + + P +++ Sbjct: 584 NLMLFIRPTVIR 595 >gi|289625073|ref|ZP_06458027.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330865718|gb|EGH00427.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 701 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 63/352 (17%), Positives = 133/352 (37%), Gaps = 30/352 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGG---------------------KFVSEGGDFS 246 D KQ+G + + ++SG K Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIG 520 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + L A+E+ +++P + ++A G + Y+ SS+GAT+ Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V+ + + L TP + RI + ++ EP +P + + + V + G Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGE 639 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP + Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691 >gi|301064256|ref|ZP_07204699.1| general secretion pathway protein D [delta proteobacterium NaphS2] gi|300441701|gb|EFK06023.1| general secretion pathway protein D [delta proteobacterium NaphS2] Length = 694 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 70/309 (22%), Positives = 118/309 (38%), Gaps = 28/309 (9%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G I R V T + ++V+ L+I V ++ I EV Sbjct: 355 KGKAPLISKEARIVADQATNSLVIMADPDDYMILEEVIQKLDIP-RMMVFIEALIMEVNV 413 Query: 208 DILKQIGFQH--------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK----- 248 + +G + + GSS G + + G + +G V Sbjct: 414 NKDFNLGVEWEGVKTFTYDGKDAAAFAGSSPGNFDTISGVVGKGTLPQGFSMGVITDTIE 473 Query: 249 -GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----G 303 + + V++A ++ + L+ P L + A G Y+ +T Sbjct: 474 IAGVKFPNLAAVVNAYQQDRDVHILSTPQLLTTDNEEAEIMVGRNVPYQVRQETTAAELD 533 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVE 361 +S D GV L TP + + L+I EV+ V A D P R A TTV Sbjct: 534 YSSYEYKDVGVTLKVTPQISLERSVRLKIYQEVTRLVDNNALTASDRPETYKRLAQTTVI 593 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK- 420 + T+V+ GL+ DD + +P L IP++G LF+ + RE+T +FI TP +++ Sbjct: 594 VKDANTVVIGGLIGDDTTHTEYKVPCLGDIPLVGWLFKGTSKKREKTNLFIFLTPRIIQN 653 Query: 421 PVAMRDLSR 429 P + + Sbjct: 654 PAEAKKIYL 662 >gi|239998226|ref|ZP_04718150.1| PilQ [Neisseria gonorrhoeae 35/02] gi|240112199|ref|ZP_04726689.1| PilQ [Neisseria gonorrhoeae MS11] gi|268594082|ref|ZP_06128249.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae 35/02] gi|268598258|ref|ZP_06132425.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae MS11] gi|268547471|gb|EEZ42889.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae 35/02] gi|268582389|gb|EEZ47065.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae MS11] gi|317163512|gb|ADV07053.1| PilQ [Neisseria gonorrhoeae TCDC-NG08107] Length = 731 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 101/259 (38%), Gaps = 22/259 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 524 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + S+ + + L A E + +TLA P + + + Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI- 341 A SG + + ++S G +T+ + L TP + G+I + ++ P Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 645 ASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704 Query: 402 RFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 705 GKKTDRRELLIFITPRIID 723 >gi|167036119|ref|YP_001671350.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1] gi|166862607|gb|ABZ01015.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1] Length = 420 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 66/426 (15%), Positives = 150/426 (35%), Gaps = 24/426 (5%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M+ + + +S S P + + +++ + + Sbjct: 1 MKTWMKYLLATLLSVPLASATSYEGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQG 60 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 V + +QD V D+V+ S L + G ++ D + Sbjct: 61 NVTMRLQD--VPWDQALDLVLRSKG---LARRQEGNVLLVAPAADFAAQSAGTRAGQVLE 115 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTV--------VLHGMVRTIQDSQRAVELSETFLSQSG 172 A L+ R + + + +++ + +L G + + + V Sbjct: 116 AQLQPLRRELLPIHHAKAADLAELLQSSLVGDGILTGSLSVDERTNTLV---------VH 166 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + ++++ L++ QV ++ I E D K +G + + Sbjct: 167 MPADRLAELRQLVTQLDVPVR-QVAIEARIVEANVDYEKSLGVRWGGPLYGAQLRPGKEL 225 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 GG + + + L A+E++ +++P + ++A G + Sbjct: 226 FVDLGVERAGGSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTE 285 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 Y+ S S GATSV+ + + L TP + ++ + ++ EP ++P R Sbjct: 286 VPYQETSQS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIR 344 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + + V + G TIV+ G+ + + +P +P +G LFR +++E+ + Sbjct: 345 KNEVNAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLV 404 Query: 413 AATPFL 418 TP + Sbjct: 405 FLTPRI 410 >gi|170766950|ref|ZP_02901403.1| protein transporter HofQ [Escherichia albertii TW07627] gi|170124388|gb|EDS93319.1| protein transporter HofQ [Escherichia albertii TW07627] Length = 386 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 D + ++ + + NI ++ + + + Sbjct: 66 HSIAWQNDNIARQEAEWARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A ++ ++ +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKAALTALEQWAAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHV 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S G + G ++ + L ALE+ + +A P L A Sbjct: 185 GSVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|240013410|ref|ZP_04720323.1| PilQ [Neisseria gonorrhoeae DGI18] gi|240015851|ref|ZP_04722391.1| PilQ [Neisseria gonorrhoeae FA6140] gi|240120480|ref|ZP_04733442.1| PilQ [Neisseria gonorrhoeae PID24-1] Length = 731 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 101/259 (38%), Gaps = 22/259 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 524 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + S+ + + L A E + +TLA P + + + Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI- 341 A SG + + ++S G +T+ + L TP + G+I + ++ P Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 645 ASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704 Query: 402 RFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 705 GKKTDRRELLIFITPRIID 723 >gi|238756264|ref|ZP_04617580.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473] gi|238705519|gb|EEP97920.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473] Length = 660 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 96/269 (35%), Gaps = 13/269 (4%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 ++T ++V+ L+I QV ++ I EV+ + +G Q Sbjct: 333 AQTNSLIINAAPDLLRDLEQVITQLDIR-RAQVLVEAIIVEVQDNDDLNLGVQWFNRHGG 391 Query: 224 SGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 A S G + R ++ + AL + LA P++ Sbjct: 392 GSNFPDTGASASSISANNIGSSLNGVAGLATGFYRGNWSGLFTALRTNSQNDILATPSIV 451 Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + A F+ G + T S +T +V G+ L P + + L I+ Sbjct: 452 TLDNMEAEFSVGQEVPILTGSQTTTGDNIFRTVDRKSVGIKLKVKPQINKGDSVLLEIEQ 511 Query: 335 EVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS G ++ R V + S +V+ GLL + +PLL I Sbjct: 512 EVSSVAEKTPGGTGDLGATFNTRTVKNAVMVGSNNIVVVGGLLDSTSHDITSKVPLLGDI 571 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P +G LFR++ + + + P +++ Sbjct: 572 PGIGFLFRSTSQKMVKRNLMLFIRPTIIR 600 >gi|320175756|gb|EFW50842.1| Type IV pilus biogenesis protein PilQ [Shigella dysenteriae CDC 74-1112] Length = 386 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + + +I ++ + + + Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLKNRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEYERRELVVFITPRLV 383 >gi|298530088|ref|ZP_07017490.1| type II and III secretion system protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509462|gb|EFI33366.1| type II and III secretion system protein [Desulfonatronospira thiodismutans ASO3-1] Length = 504 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 78/491 (15%), Positives = 164/491 (33%), Gaps = 78/491 (15%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVIN----ISDVEIGKGKKIS-------- 51 RT+ + LF ++A ++ + +++ G ++ Sbjct: 22 SSRTYSVCTLLILFILAAAIAGCTGTRDQEEPFMTQWWDLAEESRGHTHEVEERESLDIE 81 Query: 52 ----------------IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 + ++V + V +L + AD + + + G Sbjct: 82 PSHIDLEDIEPEPAHELPRDRVTLNMQQAPVATILRALSRIAD------QNIIVSETVEG 135 Query: 96 QANVIL----IGHDGKQM---------LNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142 AN+ + K + +IL + + L+ L R +I ++ Sbjct: 136 TANLNIRDVPWDQAFKSIIASQGLSYVWEGEILRIKSMQDLQHELDRAGLKEDIGRRKLA 195 Query: 143 DTV-------VLHGMVRTIQDSQRAV--------------ELSETFLSQSGRNQYANSSS 181 + ++ + Q + + + S Q + Sbjct: 196 AELTAPLMHRIVKLNYADPEKLQDNLIRFLSRDGDGEPHGSIVVDEETNSLMIQATRNDM 255 Query: 182 KKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAAD 233 ++V +N L+ Q+ ++ I E + +++G + S + Sbjct: 256 ERVHKAINHLD-RPRPQILMEANIVEATQRTARELGVRWSGRYVTPLSFEDEVGFGDLLR 314 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + + + L L ALER + L P++T + Q A FT GQ Sbjct: 315 DEAGYTGDMDLSVISARLPGSVLYAHLQALERDGEVNILTSPSITTMDNQMA-FTEHGQR 373 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 + G+ +V D + L P+V+ + + I+ E + P R Sbjct: 374 VPYETVDEDGSRTVEFEDAVLRLEVVPSVMEGNHLKMDIRVNKDEVDFTRDVRGQPVIRT 433 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + +T + + G TIV++GL K+ + + G+ L +P LG LF++ +E E I Sbjct: 434 KHTETNLVVRDGETIVISGLSKETLSDTERGVMGLRDLPGLGWLFKSREQEQEMEEFLIF 493 Query: 414 ATPFLVKPVAM 424 TP +++P Sbjct: 494 ITPTILEPQRR 504 >gi|307311947|ref|ZP_07591585.1| type IV pilus secretin PilQ [Escherichia coli W] gi|306908091|gb|EFN38591.1| type IV pilus secretin PilQ [Escherichia coli W] gi|315062668|gb|ADT76995.1| dsDNA transporter subunit [Escherichia coli W] Length = 402 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + + +I ++ + + + Sbjct: 82 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 141 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 142 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 200 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 201 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 260 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V Sbjct: 261 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 320 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 321 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 380 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 381 DGKEDERRELVVFITPRLV 399 >gi|238921473|ref|YP_002934988.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146] gi|238871042|gb|ACR70753.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146] Length = 409 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 80/434 (18%), Positives = 151/434 (34%), Gaps = 40/434 (9%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGL-----NKVIILQVPVDVQDV 69 L +P+ +P + A ++ + + +++ L + + V Sbjct: 1 MLLVMSPTGQAMPLTLWFDRAPLSSVLQAVAEFAGLNLILSEEVRGEATVHIAHTPWPRV 60 Query: 70 LVSDPTKADVVVHSPRTMYLF------GKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 L + D+ V + L + + A + +L D A + Sbjct: 61 LDALAEIHDLSVVRRDGILLIQSRARAARQIRPAAAPAPPKPPQMRSQRVVLHYADAATV 120 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 E +LR+ D + G + + +E R+ Sbjct: 121 EKSLRQR-----------RDLLGETGSAVADSRTNALLLRAEVARLAPLRDW-------- 161 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 + L++ QV L I + ++ L+++G + S S + F + Sbjct: 162 -IAQLDVPLP-QVQLAAHIVSISQEGLRELGIRWSSGDQRSRGQDTLRGAADAYFSAG-- 217 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + + L ALER + +A P L A GQ+AS G + Y G Sbjct: 218 --FQVARIGGQTLAVALAALERQDKVAIIASPHLMAAHGQTASIKQGSELPYAVSGGERG 275 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVE 361 +++ + + + TP +L+ RI L +Q + P V+ + + ++ T V Sbjct: 276 VSTMEFKEAVLGMSVTPRILADARIELALQISQNMPGRVVRQGDSEALAIDKQEITTQVT 335 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L G T +L G+ + Q G P L+ +P+LG L R+ E+ I TP L+ Sbjct: 336 LADGDTAMLGGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSA 395 Query: 422 VA--MRDLSRPDDH 433 + R L P Sbjct: 396 SSLLPRTLRPPARG 409 >gi|310777966|ref|YP_003966299.1| type II and III secretion system protein [Ilyobacter polytropus DSM 2926] gi|309747289|gb|ADO81951.1| type II and III secretion system protein [Ilyobacter polytropus DSM 2926] Length = 554 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 16/261 (6%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + K +M+ +++ + QV ++ I EV+ + G ++ + S Sbjct: 230 ASSEEADTLKNIMDKIDVP-DLQVVIEARILEVQEGTGRDWGMSWGYNSNNLTEADSSDG 288 Query: 233 DFGGKFVSEG---------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G ++ G G+L F V + LA+P +T ++G+ Sbjct: 289 SGGYLSGTDSYYDASSLSDGITLGLGLLGSDQFSAVYRNVVEDNTTEILAKPVITTLNGK 348 Query: 284 SASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A+ + Y + S +TS D G+ L TP + G I + + E+SE Sbjct: 349 KATIELTEEVPYKELEYVSDSGDATSTSYEFKDVGITLEVTPVITDDGMIKIEVTPEISE 408 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G +P RK +T V + +G T+ + GL+KD P LSKIPILG LF Sbjct: 409 VT-GYTDDGVPYVSSRKVETNVIVRNGQTLAIGGLIKDTKSTTDTKDPYLSKIPILGYLF 467 Query: 399 RNSRFNREETEIFIAATPFLV 419 ++S + +T + I TP ++ Sbjct: 468 KSSSNEKSKTNLMIFITPKII 488 >gi|297570196|ref|YP_003691540.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus AHT2] gi|296926111|gb|ADH86921.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus AHT2] Length = 690 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 73/291 (25%), Positives = 115/291 (39%), Gaps = 31/291 (10%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH- 217 + T + + V+ L+I Q+ ++ IAE+ +G Q Sbjct: 324 DIQADANTNALIMTGPPAVLQNLQTVIRQLDIR-RAQLMIEAVIAEISTARAVDLGIQWF 382 Query: 218 -----------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR---------FSFE 257 + GS + S A D G G GV FSF Sbjct: 383 SADADKVIGGTNFPGSGASMSGIAAGDEGSIAALAGLGGFNMGVFSGSTEILGREFFSFG 442 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTT 309 +++AL R L+ P+L + Q A G + T S + GAT +V Sbjct: 443 ALVNALARDGDTNILSTPSLVTMDNQEAEIIVGQNVPFLTGSFTEGATGVGGSPFQTVER 502 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D G+ L P V I L+I+ EVS A + R +T+V + G +V Sbjct: 503 RDVGIKLRVKPQVTEGDVIRLQIEQEVSSVERDDLAAGL-VTNTRNINTSVLVEDGKVLV 561 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L GL+ DD+Q+ +PLL IP+ GALFR++R R + + + P +++ Sbjct: 562 LGGLISDDVQETVSKVPLLGDIPLFGALFRHTRSERSKRNLMVFLRPVILR 612 >gi|59800555|ref|YP_207267.1| hypothetical protein NGO0094 [Neisseria gonorrhoeae FA 1090] gi|240117229|ref|ZP_04731291.1| hypothetical protein NgonPID_02009 [Neisseria gonorrhoeae PID1] gi|268602920|ref|ZP_06137087.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID1] gi|293397705|ref|ZP_06641911.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae F62] gi|62900657|sp|Q5FAD2|PILQ_NEIG1 RecName: Full=Type IV pilus biogenesis and competence protein pilQ; AltName: Full=Outer membrane protein omc; Flags: Precursor gi|59717450|gb|AAW88855.1| pilus secretion protein [Neisseria gonorrhoeae FA 1090] gi|268587051|gb|EEZ51727.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID1] gi|291611651|gb|EFF40720.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae F62] Length = 723 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 102/259 (39%), Gaps = 22/259 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 458 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 516 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + S+ + + L A E + +TLA P + + + Sbjct: 517 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 576 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + ++S G +T+ + L TP + G+I + ++ P Sbjct: 577 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 636 Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 637 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 696 Query: 402 RFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 697 GKKTDRRELLIFITPRIID 715 >gi|237703055|ref|ZP_04533536.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA] gi|226902319|gb|EEH88578.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA] Length = 654 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364 Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249 +G Q + + + + + Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTVIR 599 >gi|194097721|ref|YP_002000762.1| PilQ [Neisseria gonorrhoeae NCCP11945] gi|240124975|ref|ZP_04737861.1| PilQ [Neisseria gonorrhoeae SK-92-679] gi|240127489|ref|ZP_04740150.1| PilQ [Neisseria gonorrhoeae SK-93-1035] gi|254493004|ref|ZP_05106175.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae 1291] gi|268683559|ref|ZP_06150421.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae SK-92-679] gi|268685861|ref|ZP_06152723.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae SK-93-1035] gi|193933011|gb|ACF28835.1| PilQ [Neisseria gonorrhoeae NCCP11945] gi|226512044|gb|EEH61389.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae 1291] gi|268623843|gb|EEZ56243.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae SK-92-679] gi|268626145|gb|EEZ58545.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae SK-93-1035] Length = 731 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 102/259 (39%), Gaps = 22/259 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 524 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + S+ + + L A E + +TLA P + + + Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + ++S G +T+ + L TP + G+I + ++ P Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644 Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 645 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704 Query: 402 RFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 705 GKKTDRRELLIFITPRIID 723 >gi|332284397|ref|YP_004416308.1| general secretion pathway protein D [Pusillimonas sp. T7-7] gi|330428350|gb|AEC19684.1| general secretion pathway protein D [Pusillimonas sp. T7-7] Length = 792 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 64/272 (23%), Positives = 104/272 (38%), Gaps = 29/272 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADFGGKFV 239 +V++ L+ QV ++ I EV D + G Q G SS S A+F G + Sbjct: 466 EVIDQLDQR-RAQVLVESLIVEVSTDKAAEFGIQWMAGGNDLSSGNTSFMGGANFNGSGI 524 Query: 240 SEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISG 282 + G ++ + + + ALE L+ P L + Sbjct: 525 NPSGITTIDALAQGLSLGVVKGTVDILGTEILNLGVLARALESKGDANVLSTPNLMTLDN 584 Query: 283 QSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + AS G + T + +VT D G+ L P + G + + I E Sbjct: 585 EEASIIVGRTVPFVTGQYTTSADGASNPFQTVTREDVGLTLRIRPQISEGGTVKMAIYQE 644 Query: 336 VSEPVIGVNAGDMPSYR-VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VS ++ R +T V + G IVL GLL+D I +P+L IP+L Sbjct: 645 VSSIDGAASSAGAGLITRKRALETNVLVDDGQIIVLGGLLEDTISDSTSAVPVLGDIPVL 704 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 G LFR + +R +T + + P +V+ Sbjct: 705 GNLFRYDKRSRTKTNLMVFLRPHIVRNARDGA 736 >gi|309782882|ref|ZP_07677602.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA] gi|308918306|gb|EFP63983.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA] Length = 719 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------------------F 230 QV ++ I E + +G + ++G F Sbjct: 467 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 526 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 527 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 586 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV+ + L TP + G I L +V++ +G+ + + Sbjct: 587 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLD--VDVNKDSVGIQTTNGFA 643 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ TE+ Sbjct: 644 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 703 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 704 LVFLTPRVL 712 >gi|123443753|ref|YP_001007724.1| general secretion pathway protein D [Yersinia enterocolitica subsp. enterocolitica 8081] gi|27529236|emb|CAC83029.1| Yts1D protein [Yersinia enterocolitica (type 0:8)] gi|122090714|emb|CAL13590.1| general secretion pathway protein D [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 658 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 57/317 (17%), Positives = 107/317 (33%), Gaps = 18/317 (5%) Query: 148 HGMVRTIQDSQRAVEL---SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 G + V + ++T ++V+N L+I QV ++ I E Sbjct: 311 KGQATPAVAMMKNVVIKADAQTNSLIINAAPDLLRDLEQVINQLDIR-RAQVLVEAIIVE 369 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETV 259 V+ +G Q A ++ G + R ++ + Sbjct: 370 VQDSDALNLGVQWFNRNGGGSNFPENGASASSITSNDMGSSLKGITGLATGFYRGNWSGL 429 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVV 315 AL + LA P++ + A F+ G + + S +T +V G+ Sbjct: 430 FTALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPVLSGSQTTTGDNIFRTVDRKSVGIK 489 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P + + L I+ EVS G ++ R V + S +V+ G Sbjct: 490 LKVKPQINKGDSVLLEIEQEVSSVAEKAPGGTGDLGATFNTRMVKNAVMVGSNNIVVVGG 549 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRP 430 LL + +PLL IP +G LFR++ + + + P +++ + Sbjct: 550 LLDSTSHDVTSKVPLLGDIPGIGFLFRSTSQKMVKRNLMLFIRPTIIREQGDYVDASKKK 609 Query: 431 DDHYSVEDDAKAFFFNR 447 D + E D + Sbjct: 610 LDKFQQEQDIDRTTNGQ 626 >gi|310765060|gb|ADP10010.1| General secretion pathway protein D [Erwinia sp. Ejp617] Length = 645 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 63/392 (16%), Positives = 132/392 (33%), Gaps = 24/392 (6%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 + ++ AD + + G + + ++ Sbjct: 205 ASAPQVAEILNFINGDSKKTGSNKPFAK------AVADTRT---NAVLITGDELARQQLV 255 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 D + +L+ + + V + ++ Sbjct: 256 --DAARNLDEEKDRSSNSRVFYLKHAKAENLLEVLSGVSSTMQDKSESKTASPVAMTKDI 313 Query: 161 VELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V ++T + N + ++++ L+I+ QV ++ I EV+ +G Q Sbjct: 314 VVKADTHTNSLIINAPPDVMGDLEEIITQLDIS-RAQVQVEAIIVEVQDADGLALGVQWF 372 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERATAIRTLA 273 + A S + ++ + +AL+ + LA Sbjct: 373 NKNGGGTQFPAADAPVSNLIGSTVAETLSKANGLAAGFYHGNWAGLFNALQTNSQNNILA 432 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIG 329 P++ + A FT G T S +T SV G+ L P + + Sbjct: 433 TPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVFNSVDRKSVGIKLKVKPQINKGDSVL 492 Query: 330 LRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + I+ EVS + + ++ R TV + SG T+V+ GLL +++ +P+L Sbjct: 493 MEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVLVESGKTVVVGGLLDTTHNKVESSVPVL 552 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 KIP+LGALFR + + + + + P +++ Sbjct: 553 GKIPLLGALFRYTTDKQSKRNLMLFIRPTIIR 584 >gi|241664484|ref|YP_002982844.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D] gi|240866511|gb|ACS64172.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D] Length = 721 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------------------F 230 QV ++ I E + +G + ++G F Sbjct: 469 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 528 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 529 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 588 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV+ + L TP + G I L +V++ +G+ + + Sbjct: 589 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLD--VDVNKDSVGIQTTNGFA 645 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ TE+ Sbjct: 646 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 705 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 706 LVFLTPRVL 714 >gi|240114943|ref|ZP_04729005.1| PilQ [Neisseria gonorrhoeae PID18] gi|240122781|ref|ZP_04735737.1| PilQ [Neisseria gonorrhoeae PID332] gi|260441241|ref|ZP_05795057.1| PilQ [Neisseria gonorrhoeae DGI2] gi|268600608|ref|ZP_06134775.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID18] gi|268681392|ref|ZP_06148254.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID332] gi|291044580|ref|ZP_06570289.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2] gi|268584739|gb|EEZ49415.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID18] gi|268621676|gb|EEZ54076.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID332] gi|291011474|gb|EFE03470.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2] Length = 731 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 102/259 (39%), Gaps = 22/259 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 524 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + S+ + + L A E + +TLA P + + + Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + ++S G +T+ + L TP + G+I + ++ P Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644 Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 645 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704 Query: 402 RFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 705 GKKTDRRELLIFITPRIID 723 >gi|312972346|ref|ZP_07786520.1| transport protein hofQ [Escherichia coli 1827-70] gi|310334723|gb|EFQ00928.1| transport protein hofQ [Escherichia coli 1827-70] Length = 386 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + + +I ++ + + + Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGNDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP+ G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|187930316|ref|YP_001900803.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J] gi|187727206|gb|ACD28371.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J] Length = 721 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------------------F 230 QV ++ I E + +G + ++G F Sbjct: 469 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 528 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 529 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 588 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV+ + L TP + G I L +V++ +G+ + + Sbjct: 589 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLD--VDVNKDSVGIQTTNGFA 645 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ TE+ Sbjct: 646 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 705 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 706 LVFLTPRVL 714 >gi|77919728|ref|YP_357543.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM 2380] gi|77545811|gb|ABA89373.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM 2380] Length = 874 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 18/243 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFGGKFVSEG--- 242 QV ++ I E + +G I+ + S G VS G Sbjct: 634 RQVLIEARIVEASATFSRDLGVNWGISYQHNPGSDVEGNDASIGMGGTLVGIPVSPGEVS 693 Query: 243 ----GDFSVKGVL-DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + V D+ + L ALE++ R ++ P ++ ++G+ A G + Y + Sbjct: 694 SGIVSGLTFGQVGVDKTVLDLRLAALEQSGHGRIVSTPRVSTLNGEEAEVAQGTEIPYLS 753 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 V S T + L TP + G + L I+ + + P+ ++A Sbjct: 754 V--SDDGTKTEFKKAELSLKVTPEINPDGSVILEIEAKNDSRGANTGLSEAPAIDTKRAT 811 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V + G T V+ G+ D + G+P L +PILG LF++ + E E+ + TP Sbjct: 812 TKVLVKDGETTVIGGIFIQDKSESDSGVPWLMNVPILGHLFKSKSVSEERRELLVFITPR 871 Query: 418 LVK 420 ++ Sbjct: 872 ILD 874 >gi|300903573|ref|ZP_07121495.1| general secretion pathway protein D [Escherichia coli MS 84-1] gi|301305534|ref|ZP_07211626.1| general secretion pathway protein D [Escherichia coli MS 124-1] gi|300404446|gb|EFJ87984.1| general secretion pathway protein D [Escherichia coli MS 84-1] gi|300839229|gb|EFK66989.1| general secretion pathway protein D [Escherichia coli MS 124-1] gi|315255908|gb|EFU35876.1| general secretion pathway protein D [Escherichia coli MS 85-1] Length = 650 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-HAQVLVEAIIVEVQDG 360 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249 +G Q + + + G S + Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595 >gi|309785870|ref|ZP_07680501.1| transport protein hofQ [Shigella dysenteriae 1617] gi|308926990|gb|EFP72466.1| transport protein hofQ [Shigella dysenteriae 1617] Length = 267 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 6/252 (2%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 14 DNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVT 72 Query: 233 DFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G V G ++ + L ALE+ + +A P L A Q AS Sbjct: 73 TLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 132 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ V V+ G+ Sbjct: 133 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 192 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 193 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 252 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 253 RELVVFITPRLV 264 >gi|325498932|gb|EGC96791.1| outer membrane porin HofQ [Escherichia fergusonii ECD227] Length = 385 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 112/252 (44%), Gaps = 6/252 (2%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 N+ A ++ + ++ +++ QV L I + L+++G + + + Sbjct: 132 DNKTALAALEHWISEMDVP-VGQVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVT 190 Query: 233 DFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 V G ++ + L ALE+ + +A P L A Q AS Sbjct: 191 TLSSDLAVATATTQVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 250 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ V V+ + G+ Sbjct: 251 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGE 310 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + K+ IPLL IP LG LF + E Sbjct: 311 VLTIDKQEIETQVEVKSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENER 370 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 371 RELVVFITPRLV 382 >gi|315125412|ref|YP_004067415.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas sp. SM9913] gi|315013925|gb|ADT67263.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas sp. SM9913] Length = 696 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 59/307 (19%), Positives = 118/307 (38%), Gaps = 33/307 (10%) Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 +++ + + G V Q + + + S ++++ L+I + Sbjct: 398 ADLLKTDTNSIITARGSVSVDQRTNTLLM---------KDTAKSIESVRRMVETLDIPVK 448 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI--------------------TGSSSGPSKSFAAD 233 QV ++ + VR ++ + +G + G+ S + Sbjct: 449 -QVVIEARMVTVRDNVTEDLGVRWGFSDQQGSDGVSGTLEGAETISNGNIPSLSDRLNVN 507 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 S + + + + L ALE +A P +TA + Q A G + Sbjct: 508 LPVANPSASIGMHIAKLANGTLIDLELTALEEENKGEIIASPRITAANQQKARIEQGTEI 567 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SY 351 Y +SS GAT+V+ + L TP + ++ L + V G P + Sbjct: 568 PYVESASS-GATTVSFKKAVLSLEVTPHITPDNKVILNLIITQDTRGDTVQTGTGPAVAI 626 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ +T V + +G T+VL G+ + I + +PLL +P +G LF+++ E+ E+ Sbjct: 627 DTQQIETQVLVENGQTVVLGGIFQQQIINSTKKVPLLGDLPYVGRLFKSTSEFNEKRELL 686 Query: 412 IAATPFL 418 I TP + Sbjct: 687 IFVTPKI 693 >gi|90023220|ref|YP_529047.1| helix-turn-helix, AraC type [Saccharophagus degradans 2-40] gi|89952820|gb|ABD82835.1| type II and III secretion system protein [Saccharophagus degradans 2-40] Length = 666 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 83/459 (18%), Positives = 159/459 (34%), Gaps = 60/459 (13%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L P + L E+N V++ + I + + + ++ + V ++ Sbjct: 151 VLRPLVPQHSHLSSYTESNVIVVSDTAPNIARLRDVIERIDTAALPTTEVVPLKYADAED 210 Query: 75 TKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDILIERDIAHLEMTL-R 128 A + G+ ++ + +L+ + + + L L R Sbjct: 211 LVATLTKLDR------GEKQSSTPVNQLQIVADKRNNSVLLSGEDIQRKRAKDLIRKLDR 264 Query: 129 RFIADSNIRVEMVS------DTVVLHGMVRTIQDSQ------RAVELSETFLSQSGRNQY 176 + N+RV ++ L +V+ +Q Q + + + Sbjct: 265 PPVQMGNVRVVYLNYANAKDVAATLSKVVQNMQQMQPGGKDKGGKDGATVEADEDTNALL 324 Query: 177 ANSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S + +LL I QV ++ I ++ D K++G Q + ++G + Sbjct: 325 LTGSGDMLNSLLTIVERLDIKRAQVLVEAIIVDINVDANKELGVQWMFSNENNGTFGGSS 384 Query: 232 ADFG----------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 G G + G V G +F +L AL+ ++ Sbjct: 385 QGDGSLGSLATGTLGGGTDALTNLASGIAGNTGQLLGVAGNNGGENFIALLSALQTSSDA 444 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS---------STGATSVTTHDYGVVLHFTP 320 L+ P+L + Q AS + G ++T S T++ D G+ L TP Sbjct: 445 NILSTPSLVTMDNQEASISVGQSVPFRTGSYSTTGTTGSVGNPFTTIQREDVGITLTVTP 504 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 V +I L I EVS V K +T + G ++L GL+++D+Q Sbjct: 505 HVNEGNKILLDISQEVSSISSSVAGSADLITNQSKIETQLLANDGQIVILGGLIQEDVQD 564 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP+LG LF+ + + + +V Sbjct: 565 GDTRVPLLGSIPLLGHLFKYQSTKFLKKNLMVFIRVKIV 603 >gi|256823455|ref|YP_003147418.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069] gi|256796994|gb|ACV27650.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069] Length = 701 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 108/282 (38%), Gaps = 21/282 (7%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V T Q + + ++++ L+I QV ++ I Sbjct: 425 RGSVTTDQRTNTIL---------VQDVSTKIEDVRRLVAQLDIPVR-QVLIEARIVTADD 474 Query: 208 DILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + +G + ++ + + F + + S + D + L ALE Sbjct: 475 GFARDLGSRFGVSDVMNSGEVNGDFNVNLPIANPAGSLGLSFARLQDGIVVDMELSALES 534 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 +A P + + + A +G + Y +SS GA +V + + L TP + Sbjct: 535 ENRGEVVASPKVITANQKEAFIKAGEEIPYLQGASS-GAANVQFKEAVLELKVTPQITPD 593 Query: 326 GRIGLRIQTEVSE--------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 GR+ L + G + P+ ++ T V + +G TIVL G+ + Sbjct: 594 GRVILDLAITQDTRGENVIFTSPDGGGSSGAPAINTQEIGTQVLVDNGETIVLGGIFQHR 653 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL IP+LG LF+N++ + E+ I TP ++ Sbjct: 654 TTYDESKVPLLGDIPLLGWLFKNTQREDTKQELLIFVTPKII 695 >gi|170018373|ref|YP_001723327.1| outer membrane porin HofQ [Escherichia coli ATCC 8739] gi|169753301|gb|ACA76000.1| type IV pilus secretin PilQ [Escherichia coli ATCC 8739] Length = 386 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + + +I ++ + + + Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP+ G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEDERRELVVFITPRLV 383 >gi|307260659|ref|ZP_07542351.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869736|gb|EFN01521.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 432 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%) Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + S K ++ L+ +Q+ ++ I + + L+++G + I ++G K + Sbjct: 155 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 214 Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + ++ + L ALE+ + +A P L Sbjct: 215 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 274 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + + AS G + Y + ++ + + L TP + + +I L + + P Sbjct: 275 NKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKKILLDLVVTQNSPN 334 Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF Sbjct: 335 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 394 Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425 +S + E+ I TP++VK + Sbjct: 395 HSSDKISKRELVIFVTPYIVKNGQPQ 420 >gi|289676481|ref|ZP_06497371.1| type II and III secretion system protein:NolW-like:NolW-like [Pseudomonas syringae pv. syringae FF5] Length = 701 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 108/257 (42%), Gaps = 23/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------SK 228 ++++ L+I QV ++ I E D KQ+G + + ++SG + Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAG 495 Query: 229 SFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + + + V + + L A+E+ +++P + Sbjct: 496 NTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674 Query: 402 RFNREETEIFIAATPFL 418 + ++E+ + TP + Sbjct: 675 VVSESKSELLVFLTPRI 691 >gi|309703802|emb|CBJ03143.1| protein transport protein [Escherichia coli ETEC H10407] Length = 412 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 80/425 (18%), Positives = 155/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + + + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +I ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ + L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L++ V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP+ G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFN 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|322418906|ref|YP_004198129.1| type IV pilus secretin PilQ [Geobacter sp. M18] gi|320125293|gb|ADW12853.1| type IV pilus secretin PilQ [Geobacter sp. M18] Length = 922 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 66/451 (14%), Positives = 157/451 (34%), Gaps = 56/451 (12%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK-----ISIGLNKVIILQV-PVDV 66 + L + + + P + + AA + + + + + L+ D+ Sbjct: 483 AAKLPPAPVAKPRAPEVADELAAPVRSDEAMTEVSGTDKRVPKKVYKGRRVTLEFSDADI 542 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 + + A+V + + G ++ L+ Q L++ + + + Sbjct: 543 RKIF---QLIAEVSNLN---FLISDDVTGTISIKLVNVPWDQALDVILDAKGLAMVQQGN 596 Query: 127 LRRFIA--------DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF--LSQSGRNQY 176 + + D + + ++ ++ + E++ F L Sbjct: 597 IVQIKPRSKMQNQADEELAAKKAAERLMEMKTAVFEVNYASVGEVATQFNMLKSDRGIIT 656 Query: 177 ANSSSKKVMNLLNIAG--------------EDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + + +V+ E QV ++ I E + +G Q +++ Sbjct: 657 KDERTSRVIVKDIQTALDDMRALLKTLDAPEKQVMIEARIVEATSTFTRDLGVQWALSYK 716 Query: 223 SSGPSKSFAADFGGKFVSEGGD--------------FSVKGVLDRFSFETVLHALERATA 268 S S + F S + + + A Sbjct: 717 DSSASIANINSAETTFGGVVSTAGPGTSGSGGLGLGMSFGKLTSNVQLDMRIAAAATIGQ 776 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 ++ ++ P + ++ ++A + G Y+T S+ T + + L TP + + G + Sbjct: 777 VKIISTPKVVTLNNKAAKISQGQSIPYQTTSAEG--TKTEFVEAALTLEVTPHITADGSV 834 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 ++I+ + P G P ++A T + + +G T V+ G+ D + G+P L Sbjct: 835 SMKIKASNNSP----GTGTPPPINKKEATTELVVSNGDTTVIGGIYVDSDTESDTGVPFL 890 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 + IP+LG LF+++ + +TE+ I TP +V Sbjct: 891 ADIPLLGWLFKSNTKQKTKTELLIFITPKIV 921 >gi|212634883|ref|YP_002311408.1| type II and III secretion system protein:NolW-like protein [Shewanella piezotolerans WP3] gi|212556367|gb|ACJ28821.1| Type II and III secretion system protein:NolW-like protein [Shewanella piezotolerans WP3] Length = 688 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 72/397 (18%), Positives = 139/397 (35%), Gaps = 59/397 (14%) Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 AD + + + G + L Q L+L + + +E + Sbjct: 294 IADY---NNFNLVVSDTVEGDITLRLDDVPWDQALDLILQTKGLDKRIEGNILMIAPSEE 350 Query: 136 IRVEMVSD----------------------------TVVLHGMVRTIQDSQRAVELSETF 167 I + + ++L G ++ S+ ++ Sbjct: 351 IAIRESQELKNRQEVKELAPLYSEYLQINYAKAADIAILLKGEDSSLLSSR--GSVAVDE 408 Query: 168 LSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 + + + + + + L+ + QV ++ + V+ D+ + +G + +T Sbjct: 409 RTNTLLVKDTEETLESIYRLIEVLDIPIKQVLIEARMVTVKDDVAEDLGVRWGVTDQQGT 468 Query: 226 PSKSFA---------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 S + + FSV + D + L ALE Sbjct: 469 KGTSGSLEGANDIAAGILPSLNDRLNVNLPAAPVNATSIAFSVAKLADGTVLDLELSALE 528 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + +A P + S Q A++ G + +SS+GAT+VT + L TP + Sbjct: 529 QENKGEIIASPRIMT-SNQKAAYIEQGVEIPYVEASSSGATTVTFKKAVLSLRVTPQITP 587 Query: 325 PGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 R+ L ++ V+ G+ S ++ T V + G TIVL G+ + + Sbjct: 588 DNRVILDLEITQDSQGKVVATPTGEAVSIDTQRIGTQVLVDHGETIVLGGIYQQQLISRV 647 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP LG +FR++ E E+ I TP +V Sbjct: 648 SKVPLLGDIPYLGFMFRSTSDKNERQELLIFVTPKIV 684 >gi|54310371|ref|YP_131391.1| putative MSHA biogenesis protein MshL [Photobacterium profundum SS9] gi|46914812|emb|CAG21589.1| putative MSHA biogenesis protein MshL [Photobacterium profundum SS9] Length = 556 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 77/312 (24%), Positives = 120/312 (38%), Gaps = 35/312 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 ++E ++ G R+I S +A + + ++ + S SKK + Q Sbjct: 229 QLEKAVQAMIGSGEGRSIVVSPQASLISVRAYPNELREVKEFLSVSKK-------RLKRQ 281 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS------KSFAADFGGKFVSEGGDFSVKG 249 V L+ I EV Q G S SS G + +A GG +S Sbjct: 282 VVLEAKIMEVTLSDGYQQGVNWSNITSSIGGTDIVFGRTGPSALPGGDAISALLGGQTNL 341 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------- 302 + +FE VL LE + L+ P +TA + Q A GG + T S Sbjct: 342 TISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSGDNS 401 Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-------- 351 +T G+ L TP + G + L + V E V D+ + Sbjct: 402 TSAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKEIDLGATFGVYKLPL 461 Query: 352 ---RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +R++D+ + SG +V+ GL+K I +P L IP LG LFRN + +T Sbjct: 462 AKSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVKSKT 521 Query: 409 EIFIAATPFLVK 420 E+ I P +V Sbjct: 522 ELVILLKPTVVD 533 >gi|301382657|ref|ZP_07231075.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato Max13] gi|302060641|ref|ZP_07252182.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato K40] gi|302130950|ref|ZP_07256940.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331016027|gb|EGH96083.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 701 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 134/352 (38%), Gaps = 30/352 (8%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + ++ + IA L R + + +D L V Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401 Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 + + +R + + Q + + ++++ L+I QV ++ I E Sbjct: 402 TSAESKAEERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460 Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246 D KQ+G + + ++S + A+ Sbjct: 461 DYNKQLGVRWGGSTNTSRNGKWTTYGLDDNGDEGGNTNANLTSNIPFVDLGAADATTGIG 520 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + L A+E+ +++P + ++A G + Y+ SS+GAT+ Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V+ + + L TP + RI + ++ EP +P + + + V + G Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + TP + Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691 >gi|330977147|gb|EGH77105.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 701 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 108/257 (42%), Gaps = 23/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------SK 228 ++++ L+I QV ++ I E D KQ+G + + ++SG + Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAG 495 Query: 229 SFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + + + V + + L A+E+ +++P + Sbjct: 496 NTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674 Query: 402 RFNREETEIFIAATPFL 418 + ++E+ + TP + Sbjct: 675 VVSESKSELLVFLTPRI 691 >gi|150260167|ref|ZP_01916895.1| general secretion pathway protein D [Yersinia pestis CA88-4125] gi|165925049|ref|ZP_02220881.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. F1991016] gi|165937283|ref|ZP_02225847.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. IP275] gi|167419065|ref|ZP_02310818.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167466632|ref|ZP_02331336.1| general secretion pathway protein D [Yersinia pestis FV-1] gi|218927995|ref|YP_002345870.1| general secretion pathway protein D [Yersinia pestis CO92] gi|229840719|ref|ZP_04460878.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842725|ref|ZP_04462879.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. India 195] gi|115346606|emb|CAL19488.1| general secretion pathway protein D [Yersinia pestis CO92] gi|149289575|gb|EDM39652.1| general secretion pathway protein D [Yersinia pestis CA88-4125] gi|165914757|gb|EDR33370.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. IP275] gi|165923249|gb|EDR40400.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. F1991016] gi|166963059|gb|EDR59080.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229690205|gb|EEO82260.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. India 195] gi|229697085|gb|EEO87132.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. PEXU2] Length = 640 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 10/267 (3%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + + +V+ L+I QV ++ I E + +G + S + Sbjct: 325 TADPDMMLALGEVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNS 383 Query: 232 ADF--GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + + + +++ +L AL T LA P++ + A F Sbjct: 384 DGLLNNNGWGIATTITGLTAGFYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNV 443 Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 G + + +T S++ GV+L P + + L I+ EVS Sbjct: 444 GQEVPVLISTQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTV 503 Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + R + V + SG T+V+ GLL + +P L +P++G LFR ++ Sbjct: 504 NTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTK 563 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSR 429 E++ + + P +++ + Sbjct: 564 EKVEKSNLILFIKPTILRESDDYSVVT 590 >gi|325275672|ref|ZP_08141565.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51] gi|324099192|gb|EGB97145.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51] Length = 418 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 98/236 (41%), Gaps = 2/236 (0%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ L++ QV ++ I E D K +G + P + G Sbjct: 175 QLVAQLDVPVR-QVAIEARIVEANVDYEKALGVRWGSPLYGDNPLPGKSLFVDLGVERAG 233 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + + + L A+E++ +++P + ++A G + Y+ + S Sbjct: 234 SSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETTKS- 292 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 GATSV+ + + L TP + ++ + ++ EP ++P R + + V + Sbjct: 293 GATSVSFREASLSLEVTPQITPDNKVIMAVRVTKDEPDYVNALNNVPPIRKNEVNAKVRV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 G TIV+ G+ + + +P L +P +G LFR +++E+ + TP + Sbjct: 353 ADGETIVIGGVYSTSQNNVVDKVPFLGDLPYVGRLFRRDALQEKKSELLVFLTPRI 408 >gi|332702049|ref|ZP_08422137.1| type II and III secretion system protein [Desulfovibrio africanus str. Walvis Bay] gi|332552198|gb|EGJ49242.1| type II and III secretion system protein [Desulfovibrio africanus str. Walvis Bay] Length = 524 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 81/455 (17%), Positives = 147/455 (32%), Gaps = 70/455 (15%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR-- 85 P + +A I E K ++ +P + + + D + V+ R Sbjct: 56 PSPKPHAPEITDIGSEGASAKPATVQR------SLPDTLVTLRLRDTEVSAVLRALGRLA 109 Query: 86 --TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-----V 138 + L G+AN+ + Q+ + + + R I+ +++ Sbjct: 110 KVNLLLSPGVQGKANLDVRNASWSQVFEGLLKSHGLTWAWQGQVLRVISAEDLQREASVS 169 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM----NLLNIAG-- 192 + + L A +L E V+ N L I Sbjct: 170 NAMGGNLALRQTSVVAVRYADAAKLKENLQPLMTTGPTGQPMGTLVVDEHNNALIIQAAP 229 Query: 193 ----------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 Q+ LK I E +D + +G Q +SG + A GG Sbjct: 230 EESRRILRLVEQLDKPRAQILLKAHIVETTKDTARDLGVQWGGVYQTSGSGNNLFAIPGG 289 Query: 237 K--------------------------------FVSEGGDFSVKGVLDRFSFETVLHALE 264 + G L E L AL+ Sbjct: 290 TNGRLEDNKWVYDSTLGTGIGGQGFGVNLPADLAAGGTQLGLMFGKLGGSILELQLSALQ 349 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + L+ P+++ + Q A FT G+ + + G +V D + L TP V+ Sbjct: 350 ENGRVNILSSPSISTLDNQMA-FTENGERVPYVATDEEGDLNVKFEDAVLRLEITPHVID 408 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 ++ L+I E P ++ +T + + G T+V++GL +D + Sbjct: 409 REQLKLKILVRKDEVDTSRTVQGNPFIIKKRTETVLVVDDGETVVISGLSRDFDSSRDQK 468 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L IP+LG LF+ + E E+ I TP ++ Sbjct: 469 VPWLGDIPLLGRLFQRNVDKAEMEEVLIFITPHVL 503 >gi|77359203|ref|YP_338778.1| general secretion pathway protein D [Pseudoalteromonas haloplanktis TAC125] gi|76874114|emb|CAI85335.1| General secretion pathway protein D [Pseudoalteromonas haloplanktis TAC125] Length = 688 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 133/396 (33%), Gaps = 68/396 (17%) Query: 88 YLFGKNV--GQANVILIGHDGKQMLNLDILIERDIAHLEMT-------LRRFIADSNIRV 138 +L K V G+ N +++ +G+ LI+R LE L A+ ++V Sbjct: 231 FLIPKVVADGRTNSVIVSGEGQARTRAIELIKRLDGELESQGNTKVFYLNYAKAEDLVKV 290 Query: 139 ----------EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + + + S A S + + S + V+ L Sbjct: 291 LQGVSKSLTDDTQGGSATKTRTRSNNETSIEAHPDSNSLI--ITAQPDTMRSLESVIERL 348 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------- 241 +I QV ++ I EV G Q + G Sbjct: 349 DIR-RAQVLVEAIIIEVMEGDGINFGLQWISEQGGMLQFNNGTTVPVGALAVAAEQARDT 407 Query: 242 --------------------------------GGDFSVKGVLDRFSFETVLHALERATAI 269 GG + + + + ++ A+ + Sbjct: 408 TVSKNIIGTESGTITQVDETTKGDYGPLASLLGGINGLAMGVIKNDWGAIVQAVSTDSNS 467 Query: 270 RTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 LA P++T + + AS G + +++ +V + G+ L TP + Sbjct: 468 NILATPSITTMDNEEASILVGQEVPIITGSQTGSNNTNPFQTVERQEVGIKLKVTPQIND 527 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS S R TTV GG +VL GL+ +D+Q+ Sbjct: 528 GSAVQLTIEQEVSSVSGATAVD--ISVNKRSIKTTVMADDGGMVVLGGLIDEDVQESVSK 585 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +PLL IPILG LF+++ R + + + P +++ Sbjct: 586 VPLLGDIPILGHLFKSTNTTRRKRNLIVFIRPTIIR 621 >gi|169634604|ref|YP_001708340.1| putative general secretion pathway protein [Acinetobacter baumannii SDF] gi|260556356|ref|ZP_05828575.1| general secretion pathway protein D [Acinetobacter baumannii ATCC 19606] gi|169153396|emb|CAP02525.1| putative general secretion pathway protein [Acinetobacter baumannii] gi|260410411|gb|EEX03710.1| general secretion pathway protein D [Acinetobacter baumannii ATCC 19606] Length = 756 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 67/300 (22%), Positives = 110/300 (36%), Gaps = 45/300 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV Q+G Q ++ +SG + G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGKDADQLGVQWALGDINSGIGLINFTNAGSSLASL 440 Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278 + G S + ++ AL+ TA L+ P++ Sbjct: 441 AAGYLTGGAAGLGSAIGAGSSIALGKYKEGADGSRQLYGALIQALKENTASNLLSTPSIV 500 Query: 279 AISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + A G + T S + T+V D GV L P + G + L I Sbjct: 501 TMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVRLEI 560 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EVS R T V G T+VL GL+ DD++ ++GIP LS IP Sbjct: 561 EQEVSNVQASKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGLSSIP 620 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 LG LFR+ + + + + P +V +D + R N++Y Sbjct: 621 YLGRLFRSDTRSNTKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQLY 665 >gi|126207688|ref|YP_001052913.1| type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae L20] gi|165975656|ref|YP_001651249.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149472|ref|YP_001967997.1| type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307258421|ref|ZP_07540162.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|126096480|gb|ABN73308.1| type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875757|gb|ABY68805.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914603|gb|ACE60855.1| type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306867605|gb|EFM99452.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 432 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%) Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + S K ++ L+ +Q+ ++ I + + L+++G + I ++G K + Sbjct: 155 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 214 Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + ++ + L ALE+ + +A P L Sbjct: 215 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 274 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + + AS G + Y + ++ + + L TP + + +I L + + P Sbjct: 275 NKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPN 334 Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF Sbjct: 335 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 394 Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425 +S + E+ I TP++VK + Sbjct: 395 HSSDKISKRELVIFVTPYIVKNGQPQ 420 >gi|297537923|ref|YP_003673692.1| type II and III secretion system protein [Methylotenera sp. 301] gi|297257270|gb|ADI29115.1| type II and III secretion system protein [Methylotenera sp. 301] Length = 675 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 74/467 (15%), Positives = 156/467 (33%), Gaps = 73/467 (15%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P E I + + + I+ L+K I P ++ V D Sbjct: 190 PVSLELRDVNIKVVFEALSRATGINFILDKDIK---PDTKANIFVKKARIEDAIEMVLSS 246 Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + S T+ +F L + + + L + ++ + Sbjct: 247 NALQKKILSENTVLVFP----STQQKLKDYQDLMIRSF-YLSNTTAKQVAALIKSMLKTK 301 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 +I V+ + +V+ + ++E ++ + + Sbjct: 302 DIFVDDRLNMMVMRDTP-------EVIRIAEKLVAANDM------------------ADP 336 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 +V L++ + EV R L+++G ++ + V+ + + Sbjct: 337 EVMLEIEVLEVSRSRLQELGVEYPNRIGVNSLIPITTVTSATGVVASSTVNTPTQLTLEG 396 Query: 255 SFET-----------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 ++ + + L+ P + + + A G + T +S+ Sbjct: 397 LLNLSKGRFDVSPNPAVNFRKTTGDVNLLSNPRIRVRNNEKAKILVGDKVPVITTTSTAN 456 Query: 304 ---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKAD 357 + SV D G+ L P + + + ++I EVS I N + + R A+ Sbjct: 457 VGISESVQYVDVGLKLDVEPRITADNYVNIKIALEVSSLGERTITRNGATVYTIGTRDAN 516 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + L G T VLAGL+ DD ++ +P L IP++G LF N + + +TEI +A TP Sbjct: 517 TILRLKDGETQVLAGLISDDERKNASKLPGLGDIPLIGRLFSNQQDQKNKTEIVLAITPR 576 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 ++ +A + ++ I + + Sbjct: 577 IISNIA-----------RPSAEVSEYWSGTDAVINDKLQTTLPVTPA 612 >gi|77361631|ref|YP_341206.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas haloplanktis TAC125] gi|76876542|emb|CAI87764.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas haloplanktis TAC125] Length = 696 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 118/309 (38%), Gaps = 48/309 (15%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 ++ V+ ++T+++ ++I+ +R VE + + Sbjct: 411 PRGSVSVDQRTNTLLMKDTAKSIESVRRMVETLDIPV----------------------- 447 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSI--------------------TGSSSGPSKSFA 231 QV ++ + VR ++ + +G + G+ S Sbjct: 448 --KQVVIEARMVTVRDNVTEDLGVRWGFSDQQGTDGISGTLEGAENISNGNIPSLSDRLN 505 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + S + + + + L ALE +A P +TA + Q A G Sbjct: 506 VNLPVANPSASIGMHIAKLANGTLIDLELTALEEENKGEIIASPRITAANQQKARIEQGT 565 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS- 350 + Y +SS GAT+V+ + L TP + ++ L + V G P+ Sbjct: 566 EIPYVESASS-GATTVSFKKAVLSLEVTPHITPDNKVILNLIITQDTRGDTVQTGTGPAV 624 Query: 351 -YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ +T V + +G T+VL G+ + I + +PLL IP +G LF+++ E+ E Sbjct: 625 AIDTQQIETQVLVENGQTVVLGGIFQQQIINSTKKVPLLGDIPYIGRLFKSTSEFNEKRE 684 Query: 410 IFIAATPFL 418 + I TP + Sbjct: 685 LLIFVTPKI 693 >gi|253701270|ref|YP_003022459.1| type IV pilus secretin PilQ [Geobacter sp. M21] gi|251776120|gb|ACT18701.1| type IV pilus secretin PilQ [Geobacter sp. M21] Length = 926 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 20/243 (8%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------ 244 A E QV ++ I E + +G Q ++ S + F Sbjct: 689 APEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASMAGINSVDTGFGGVVSAAGPGAT 748 Query: 245 --------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 S + + L A ++ ++ P + ++ ++A + G Y+ Sbjct: 749 GAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKVVTLNNKAAKISQGQSIPYQ 808 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T S+ T + + L TP + + G + ++I+ + P G P ++A Sbjct: 809 TTSAEG--TKTEFVEAALTLEVTPHITADGSVSMKIKASNNSP----GTGSPPPINKKEA 862 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + + +G T V+ G+ D + G+P LS IP+LG LF+++ + +TE+ I TP Sbjct: 863 TTELVVSNGDTTVIGGIYVDSETESDTGVPFLSDIPLLGWLFKSNAKQKTKTELLIFITP 922 Query: 417 FLV 419 ++ Sbjct: 923 KII 925 >gi|330971735|gb|EGH71801.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 701 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 108/257 (42%), Gaps = 23/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAA 232 ++++ L+I QV ++ I E D KQ+G + + ++SG A Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAG 495 Query: 233 DFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + G S + V + + L A+E+ +++P + Sbjct: 496 NTGSSVTSNVPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y+ SS+GAT+V+ + + L TP + RI + ++ EP Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674 Query: 402 RFNREETEIFIAATPFL 418 + ++E+ + TP + Sbjct: 675 VVSESKSELLVFLTPRI 691 >gi|283787974|ref|YP_003367839.1| fimbrial protein HofQ [Citrobacter rodentium ICC168] gi|282951428|emb|CBG91127.1| putative fimbrial protein HofQ [Citrobacter rodentium ICC168] Length = 412 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 95/428 (22%), Positives = 159/428 (37%), Gaps = 51/428 (11%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 +A L P+ A + + E+ + + + + LV P + Sbjct: 6 LAALIAVLHPVLAGKAQNVTLVVDEVPVAQVLQ---------ALAEQERRNLVVAPDVSG 56 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 VV R + K Q + G + + +I A+ + + N R Sbjct: 57 VVSLRLRD--VPWKQALQT---VASSAGLVLRQEEAIIHVHSANWQRDEAARLQAENARR 111 Query: 139 EMV----SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 E + + L A EL++ Q + N + N L I Sbjct: 112 EASLPLENRHITL--------HYADAAELAKA--GQKLLSARGNMTVDTRTNRLLIRDTP 161 Query: 195 ------------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 QV L I + L+++G + ++ + S + + G Sbjct: 162 PTLTLLEQWAAQMDLPVGQVELAAHIVTINEKSLRELGVKWTLAEAQSTGAVGDVSTLGS 221 Query: 237 KFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G +D + L ALE+ + +A P L A Q AS G + Sbjct: 222 DLSVAAATTRVGFNIGRIDGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEI 281 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSY 351 Y+ S +GATSV + + + TP VL GRI L++ + P V+ G++ + Sbjct: 282 PYQVSSGESGATSVEFKEAVLGMEVTPVVLQKGRIRLKLHISQNMPGQVLQQADGEVLAI 341 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ DT VE+ SG T+ L G+ ++ +E +PLL IP LG LFR+ E E+ Sbjct: 342 DKQEIDTQVEVKSGETLALGGIFSRKNKRGQESVPLLGDIPWLGQLFRHDGKENERRELV 401 Query: 412 IAATPFLV 419 + TP LV Sbjct: 402 VFITPRLV 409 >gi|187931580|ref|YP_001891564.1| type IV pili secretin component [Francisella tularensis subsp. mediasiatica FSC147] gi|187712489|gb|ACD30786.1| type IV pili secretin component [Francisella tularensis subsp. mediasiatica FSC147] Length = 590 Score = 180 bits (456), Expect = 6e-43, Method: Composition-based stats. Identities = 72/416 (17%), Positives = 156/416 (37%), Gaps = 34/416 (8%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84 P A + + + +++ ++ + + +D+++V P ++++ S Sbjct: 180 PISISFKDASVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIILVSK 235 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 L K + + + + L++ +R + + + FI + + Sbjct: 236 G---LATKKMSSISYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292 Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + +G + + + S A + T + K+V+N ++I DQV ++ Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349 Query: 201 TIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251 I EV R ++GF + + + G + + + G Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPTPVDTFVGTTAKLAY 409 Query: 252 ---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 E + ALE + +A P L + Q A F G+ + ++++GA +V Sbjct: 410 TIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVA 468 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELP 363 + + L TP + G I + I + P + R+ T V Sbjct: 469 FQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTK 528 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++ Sbjct: 529 DGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 584 >gi|149911025|ref|ZP_01899654.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36] gi|149805928|gb|EDM65914.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36] Length = 532 Score = 180 bits (456), Expect = 6e-43, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 18/243 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L+V I EV + + G ++ S+ SF G L Sbjct: 264 RQVLLEVKIMEVTLNDGYKQGIDWNVNNSNVAADSSFNFSITDITDLASGAGVF--TLAG 321 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----------T 302 F + L+ + L+ P +TA++ Q A G + T SS Sbjct: 322 NDFSAAISLLKTQGDVNVLSSPRVTALNNQKAVIKVGSDEYFVTGYSSTKSTSSDDDSIE 381 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYR--VRKAD 357 +T G+ L TP + S G + L + EV++ V ++P + VR+ D Sbjct: 382 QDVELTPFFSGIALDVTPQIDSDGGVLLHVHPSIIEVTDSNKIVAGIELPLAKSDVRETD 441 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V+ SG IV+ GL+K + L +P L IP LG LF + ++TE+ I P Sbjct: 442 TVVKAKSGEIIVIGGLMKTANKDLVSKVPFLGDIPWLGELFTYRSQSVQKTELIILIKPI 501 Query: 418 LVK 420 +V Sbjct: 502 VVD 504 >gi|22127080|ref|NP_670503.1| general secretion pathway protein D [Yersinia pestis KIM 10] gi|45442607|ref|NP_994146.1| general secretion pathway protein D [Yersinia pestis biovar Microtus str. 91001] gi|108806450|ref|YP_650366.1| general secretion pathway protein D [Yersinia pestis Antiqua] gi|108813180|ref|YP_648947.1| general secretion pathway protein D [Yersinia pestis Nepal516] gi|145597997|ref|YP_001162073.1| general secretion pathway protein D [Yersinia pestis Pestoides F] gi|153949658|ref|YP_001399937.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP 31758] gi|162421010|ref|YP_001607617.1| general secretion pathway protein D [Yersinia pestis Angola] gi|166010333|ref|ZP_02231231.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. E1979001] gi|166212712|ref|ZP_02238747.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. B42003004] gi|167399809|ref|ZP_02305327.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167425419|ref|ZP_02317172.1| general secretion pathway protein D [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229837688|ref|ZP_04457848.1| general secretion pathway protein D [Yersinia pestis Pestoides A] gi|229903625|ref|ZP_04518738.1| general secretion pathway protein D [Yersinia pestis Nepal516] gi|270487407|ref|ZP_06204481.1| general secretion pathway protein D [Yersinia pestis KIM D27] gi|294503003|ref|YP_003567065.1| general secretion protein [Yersinia pestis Z176003] gi|21960134|gb|AAM86754.1|AE013921_5 putative general secretion protein [Yersinia pestis KIM 10] gi|45437472|gb|AAS63023.1| putative general secretion protein [Yersinia pestis biovar Microtus str. 91001] gi|108776828|gb|ABG19347.1| general secretion pathway protein D [Yersinia pestis Nepal516] gi|108778363|gb|ABG12421.1| general secretion pathway protein D [Yersinia pestis Antiqua] gi|145209693|gb|ABP39100.1| general secretion pathway protein D [Yersinia pestis Pestoides F] gi|152961153|gb|ABS48614.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP 31758] gi|162353825|gb|ABX87773.1| general secretion pathway protein D [Yersinia pestis Angola] gi|165990819|gb|EDR43120.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. E1979001] gi|166206004|gb|EDR50484.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. B42003004] gi|167050517|gb|EDR61925.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055819|gb|EDR65603.1| general secretion pathway protein D [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679395|gb|EEO75498.1| general secretion pathway protein D [Yersinia pestis Nepal516] gi|229704065|gb|EEO91077.1| general secretion pathway protein D [Yersinia pestis Pestoides A] gi|262361038|gb|ACY57759.1| general secretion protein [Yersinia pestis D106004] gi|262364982|gb|ACY61539.1| general secretion protein [Yersinia pestis D182038] gi|270335911|gb|EFA46688.1| general secretion pathway protein D [Yersinia pestis KIM D27] gi|294353462|gb|ADE63803.1| general secretion protein [Yersinia pestis Z176003] gi|320014111|gb|ADV97682.1| general secretion pathway protein D [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 640 Score = 180 bits (456), Expect = 6e-43, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 10/267 (3%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + + +V+ L+I QV ++ I E + +G + S + Sbjct: 325 TADPDMMLALGEVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNS 383 Query: 232 ADF--GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + + + +++ +L AL T LA P++ + A F Sbjct: 384 DGLLNNNGWGIATTITGLTAGFYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNV 443 Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 G + + +T S++ GV+L P + + L I+ EVS Sbjct: 444 GQEVPVLISTQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTV 503 Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + R + V + SG T+V+ GLL + +P L +P++G LFR ++ Sbjct: 504 NTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTK 563 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSR 429 E++ + + P +++ + Sbjct: 564 EKVEKSNLILFIKPTILRESDDYSVVT 590 >gi|156936449|ref|YP_001440365.1| outer membrane porin HofQ [Cronobacter sakazakii ATCC BAA-894] gi|156534703|gb|ABU79529.1| hypothetical protein ESA_04350 [Cronobacter sakazakii ATCC BAA-894] Length = 390 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 5/230 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251 QV L I + + L+++G + S + + + G + Sbjct: 158 QVELAAHIVTINQQSLRELGVKWSTADADGPTTLYHPTTISADLAVANATTRLGFNIGRI 217 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D E L ALE+ + +A P L A Q AS G + Y+ S +GATSV + Sbjct: 218 DGRMLEFELSALEQKQKVEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEFKE 277 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + TPT+ GRI L+++ + P + G++ + ++ +T VE+ G T+ Sbjct: 278 AVLGMEVTPTIGQDGRIKLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGETLA 337 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + + E +P+L IP+ G+LFR+ + E+ E+ + TP ++ Sbjct: 338 LGGIFQQKNKAGNEQVPVLGNIPLFGSLFRHDGKDNEKRELVVFITPRII 387 >gi|253690245|ref|YP_003019435.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756823|gb|ACT14899.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 424 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 6/231 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251 QV L I + + L+++G + S+ + +F + + L Sbjct: 190 QVQLAAHIVTISSEHLQELGVNWGLGEGSAANNALRLNNFNVGLPVDTPAINAGFHLARL 249 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + Sbjct: 250 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 309 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368 + + TP +L GRI L ++ + P + + G+ + ++ T V + G TI Sbjct: 310 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 369 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + +P+L ++P+ G LFRN E+ I TP L+ Sbjct: 370 VLGGIFQQQKKSSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420 >gi|170023253|ref|YP_001719758.1| general secretion pathway protein D [Yersinia pseudotuberculosis YPIII] gi|169749787|gb|ACA67305.1| general secretion pathway protein D [Yersinia pseudotuberculosis YPIII] Length = 640 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 97/267 (36%), Gaps = 10/267 (3%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + + +V+ L+I QV ++ I E + +G + S + Sbjct: 325 TADPDMMLALGEVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNS 383 Query: 232 ADF--GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + + + +++ +L AL LA P++ + A F Sbjct: 384 DGLLNNNGWGIATTITGLTAGFYKGNWDVLLSALSTNKNNNILATPSIVTLDNMEAEFNV 443 Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 G + + +T S++ GV+L P + + L I+ EVS Sbjct: 444 GQEVPVLISTQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTV 503 Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + R + V + SG T+V+ GLL + +P L +P++G LFR ++ Sbjct: 504 NTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTK 563 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSR 429 E++ + + P +++ + Sbjct: 564 EKVEKSNLILFIKPTILRESDDYSVVT 590 >gi|163802236|ref|ZP_02196131.1| general secretion pathway protein D precursor [Vibrio sp. AND4] gi|159174041|gb|EDP58851.1| general secretion pathway protein D precursor [Vibrio sp. AND4] Length = 675 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 71/453 (15%), Positives = 156/453 (34%), Gaps = 83/453 (18%) Query: 49 KISIGLNKVIIL-QVPVDVQDV-LVSDPTKADVVVHSPRT---MYLFGKNVGQAN----- 98 I + + ++ ++ ++ V D V + + + + N Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKDIELVELRNASAAEMVRIVEALNKTTNQKSTP 220 Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145 ++ +++ D + + L L +A ++ D V Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280 Query: 146 VLHGMVRTIQDSQRA------------VELSETFLSQSGRNQYANS---SSKKVMNLLNI 190 VL G+ +Q ++A V ++ + S + + V+ L+I Sbjct: 281 VLKGVSDNLQAEKQAGQKNTSSAQRGEVVIASHEATNSLVLTAPPDIMMALQDVIAQLDI 340 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSF------------- 230 QV ++ I E+ +G Q I ++G S Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGNLDTGAVIQYGNTGASIGNVMVGLEEAKDQTR 399 Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 + D+ + GG L + ++ A+ + L Sbjct: 400 TEYYTNSDGERTPYDVTESGDYSTLAAALGGVNGAAMSLVMGDWTALISAVSSDSNSNIL 459 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + P++T + ASF G + T ++ +V + G+ L P + Sbjct: 460 SSPSITVMDNGEASFIVGEEVPVITGSTSGANNDNPFQTVDRKEVGIKLKVVPQINEGDS 519 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + +PL Sbjct: 520 VHLDIEQEVSNVLGAEGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERAMESESKVPL 578 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L IP++G LF+++ ++ + + P +++ Sbjct: 579 LGDIPVIGQLFKSTSTQTQKRNLMVFIKPTIIR 611 >gi|51597379|ref|YP_071570.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP 32953] gi|186896487|ref|YP_001873599.1| general secretion pathway protein D [Yersinia pseudotuberculosis PB1/+] gi|51590661|emb|CAH22303.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP 32953] gi|186699513|gb|ACC90142.1| general secretion pathway protein D [Yersinia pseudotuberculosis PB1/+] Length = 640 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 10/267 (3%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + + +V+ L+I QV ++ I E + +G + S + Sbjct: 325 TADPDMMLALGEVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNS 383 Query: 232 ADF--GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + + + +++ +L AL T LA P++ + A F Sbjct: 384 DGLLNNNGWGIATTITGLTAGFYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNV 443 Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 G + + +T S++ GV+L P + + L I+ EVS Sbjct: 444 GQEVPVLISTQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTV 503 Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + R + V + SG T+V+ GLL + +P L +P++G LFR ++ Sbjct: 504 NTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTK 563 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSR 429 E++ + + P +++ + Sbjct: 564 EKVEKSNLILFIKPTILRESDDYSVVT 590 >gi|332090365|gb|EGI95463.1| transport protein hofQ [Shigella boydii 3594-74] Length = 385 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + + +I ++ + + + Sbjct: 65 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 124 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 125 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 183 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 184 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 243 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 244 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQV 303 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 304 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 363 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 364 DGKEYERRELVVFITPRLV 382 >gi|313672368|ref|YP_004050479.1| type ii and iii secretion system protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939124|gb|ADR18316.1| type II and III secretion system protein [Calditerrivibrio nitroreducens DSM 19672] Length = 425 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 24/252 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--------------------AA 232 Q+ ++ I ++ K +G Q + + + Sbjct: 170 SQQIMIEAKIVRTTKNAGKDLGIQWGVNVNDRTSKNFPYSVQVGAGADPNRNYIVNLPIS 229 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 D + G ++ + F L+ALE + + P + ++ Q A SG + Sbjct: 230 DVARAGIGAGVGVTLGNFNNTFVLNAKLNALETKGEAKVVHSPKILTMNNQKAKLESGEE 289 Query: 293 ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 + +++T + + VL TP +L+ G I L + E+SE + ++ Sbjct: 290 IRFRETKTSTTTTTQEIEIQKDEAKTVLDITPQILNDGNILLNLAVELSEFDWTKSVDNI 349 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ KA+T V L G T+++ GL K+++ + + +PLLSKIP+LGALFRN E Sbjct: 350 PAKNKNKAETQVILKDGETLIIGGLKKENVFKNEAAVPLLSKIPLLGALFRNKSSGEELN 409 Query: 409 EIFIAATPFLVK 420 E+ I TP +++ Sbjct: 410 ELLIFVTPKIMR 421 >gi|225850118|ref|YP_002730352.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1] gi|225646446|gb|ACO04632.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1] Length = 608 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 15/244 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------ 238 Q+ ++ I ++ + +G Q S + + G Sbjct: 363 KRPYQIAIEARIVQIESSYKRDLGIQWGFAASGGAGNIGYGVTTGTATGYMFDFPAGNVD 422 Query: 239 VSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 V +G S+ V S + L ALE+ R L+ P + I G+ A + G + Y T Sbjct: 423 VGKGASMSIGIVRGLTTSLDIQLSALEQIGKSRILSRPKVITIDGEGAEISQGIEVPYST 482 Query: 298 --VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + V + L+ P G I + I+ P G P + Sbjct: 483 FGAAGGAAIARVQFKKALLKLNVIPRTTLDGNIIMNIELTQDVPDFGRAVNGQPPINTKS 542 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 + V G TIV+ G+L+ Q+ + G+P L +P+ G LF+N N E+ I T Sbjct: 543 ITSKVIAKDGTTIVIGGILEKTEQETENGVPGLRNVPLFGWLFKNKGINTTNKELLIFIT 602 Query: 416 PFLV 419 P ++ Sbjct: 603 PKII 606 >gi|315125823|ref|YP_004067826.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913] gi|315014337|gb|ADT67675.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913] Length = 688 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 59/293 (20%), Positives = 100/293 (34%), Gaps = 47/293 (16%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S + V+ L+I QV ++ I EV G Q + Sbjct: 332 TAQPDTMRSLESVIERLDIR-RAQVLVEAIIIEVMEGDGVNFGLQWISEQGGMLQFNNGT 390 Query: 232 ADFGGKFVSE---------------------------------------GGDFSVKGVLD 252 G GG + + Sbjct: 391 TVPVGSLAVAAEQARDKTVTKNIIGTESGTVTKYDETTEGDYGPLASLLGGINGLAMGVI 450 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSV 307 + + ++ A+ T LA P++T + + AS G + T S + +V Sbjct: 451 KNDWGAIVQAVSTDTNSNILATPSITTMDNEEASILVGQEVPIITGSQTGSNNENPFQTV 510 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + G+ L TP + + L I+ EVS S R TTV GG Sbjct: 511 ERQEVGIKLKVTPQINDGSAVQLTIEQEVSSVSGATAVD--ISVNKRAIKTTVMADDGGM 568 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +VL GL+ +D+Q+ +PLL IPILG LF+++ + + + + P +++ Sbjct: 569 VVLGGLIDEDVQESVSKVPLLGDIPILGHLFKSTNTTKRKRNLIVFIRPTIIR 621 >gi|209696322|ref|YP_002264253.1| general secretion pathway protein D [Aliivibrio salmonicida LFI1238] gi|208010276|emb|CAQ80608.1| general secretion pathway protein D [Aliivibrio salmonicida LFI1238] Length = 675 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 58/301 (19%), Positives = 110/301 (36%), Gaps = 46/301 (15%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----- 218 ++T + K V+ L+I QV ++ I E+ +G Q Sbjct: 309 ADTNAIIITAPPDIMRAVKDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLKTG 367 Query: 219 --ITGSSSGPSKSFA--------------------------------ADFGGKFVSEGGD 244 I S++G S D+G + GG Sbjct: 368 AMIQYSNTGASIGGTMVGLEEAKDSTTTTAVYDSDDNFQRNETTTEEGDYGALASALGGV 427 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVS 299 + + ++ A+ + L+ P++T + ASF G + + Sbjct: 428 QGAAVSIMMGDWTALITAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTSGSN 487 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + +V + G+ L P + + L I+ EVS + A D+ + R+ T+ Sbjct: 488 NENPFQTVERKEVGIKLKVVPQINEGNSVRLDIEQEVSNVLGANGAVDV-RFAKRQLSTS 546 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + G +VL GL+ + + + +P L IPILG LF+++ E+ + I P ++ Sbjct: 547 VMVEDGKMLVLGGLIDERAMESESKVPFLGDIPILGYLFKSTSTQVEKKNLMIFIKPTII 606 Query: 420 K 420 + Sbjct: 607 R 607 >gi|307247187|ref|ZP_07529238.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249414|ref|ZP_07531405.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251732|ref|ZP_07533636.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253966|ref|ZP_07535818.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256227|ref|ZP_07538014.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262791|ref|ZP_07544418.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306856325|gb|EFM88477.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858556|gb|EFM90621.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860818|gb|EFM92827.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863170|gb|EFM95112.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865408|gb|EFM97304.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871936|gb|EFN03653.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 429 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%) Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + S K ++ L+ +Q+ ++ I + + L+++G + I ++G K + Sbjct: 152 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 211 Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + ++ + L ALE+ + +A P L Sbjct: 212 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 271 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + + AS G + Y + ++ + + L TP + + +I L + + P Sbjct: 272 NKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPN 331 Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF Sbjct: 332 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 391 Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425 +S + E+ I TP++VK + Sbjct: 392 HSSDKISKRELVIFVTPYIVKNGQPQ 417 >gi|91224969|ref|ZP_01260228.1| general secretion pathway protein D precursor [Vibrio alginolyticus 12G01] gi|91190215|gb|EAS76485.1| general secretion pathway protein D precursor [Vibrio alginolyticus 12G01] Length = 672 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 70/383 (18%), Positives = 141/383 (36%), Gaps = 62/383 (16%) Query: 96 QANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 + N ILI D K L ++ + D+ R + N + E + D VL G+ + Sbjct: 232 RTNAILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKNAKAEDLVD--VLKGVSDNL 289 Query: 155 QDSQRA-----------VELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKV 200 Q ++A V ++ + S + + V++ L+I QV ++ Sbjct: 290 QAEKQAGQKTSGASRGEVVIAAHAATNSLVLTAPPDIMMALQDVISQLDIR-RAQVLIEA 348 Query: 201 TIAEVRRDILKQIGFQHSI--------------------------------------TGS 222 I E+ +G Q G Sbjct: 349 LIVEMSEGDGINLGVQWGSLETGAVIQYGNSGAPIGQVMVGLEEAKDQTRTEYYTNSNGE 408 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + + + D+ + G + + ++ A+ + L+ P++T + Sbjct: 409 RTPYDVTESGDYSTLASALSGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSITVMDN 468 Query: 283 QSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 ASF G + T ++ +V + G+ L P + + L I+ EVS Sbjct: 469 GEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVS 528 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG L Sbjct: 529 NVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHL 587 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F+++ E+ + + P +++ Sbjct: 588 FKSTSTQTEKRNLMVFIKPTIIR 610 >gi|238750896|ref|ZP_04612393.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380] gi|238710810|gb|EEQ03031.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380] Length = 316 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 132/321 (41%), Gaps = 29/321 (9%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 S AD + ++ ++ KN G A IL + K + +++ I ++ Sbjct: 2 SAAAIADYELVGKNSVIVYAKNEGVAEFILFDQNHKPITKSVVMVNNIITLATKRIQAEY 61 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS-----SSKKVMN 186 S I + + ++ +L G V + + V + + N ++N Sbjct: 62 PGSIIDISKIGNSYILTGTVESEEARDTIVNIVGEAIGSKKNKGSDNQYINTNDYPGIVN 121 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 + + +QV +K+TIAEV +D + IG S G++ G + F Sbjct: 122 KIKLPQSNQVNVKLTIAEVTKDFTENIGINWSTIGNNVGAFQFF---------------- 165 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + T++HA+ R LAEP L+ +SG++ASF GG+ + S + Sbjct: 166 ---QFNAKGISTLVHAINDDAIARVLAEPNLSVLSGETASFLVGGEIPIASTSQNG--VK 220 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELP 363 + ++G+ L+ V RI + + EVS PS R RKA TT+EL Sbjct: 221 IDYKEFGIKLNIGAKVNDKKRIRIMLNEEVSSIGKSFNVTGGDSYPSLRTRKAATTLELG 280 Query: 364 SGGTIVLAGLLKDDIQQLKEG 384 G + +L GL+ + ++ + Sbjct: 281 DGESFILGGLISSNERESLKK 301 >gi|240079992|ref|ZP_04724535.1| PilQ [Neisseria gonorrhoeae FA19] gi|268596134|ref|ZP_06130301.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae FA19] gi|268549922|gb|EEZ44941.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae FA19] Length = 731 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 101/259 (38%), Gaps = 22/259 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFRG 524 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + S+ + + L A E + +TLA P + + + Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI- 341 A SG + + ++S G +T+ + L TP + G+I + ++ P Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 645 ASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704 Query: 402 RFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 705 GKKTDRRELLIFITPRIID 723 >gi|213622639|ref|ZP_03375422.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 250 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 110/248 (44%), Gaps = 6/248 (2%) Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 + K ++ +++ QV L I + L+++G + ++ ++ + Sbjct: 1 GPGGAGKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSS 59 Query: 237 KFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G ++ + L ALE+ + +A P L A Q AS G + Sbjct: 60 DLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEI 119 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSY 351 Y+ S +GATSV + + + TPTVL GRI L++ V V+ G++ + Sbjct: 120 PYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAI 179 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ Sbjct: 180 DKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELV 239 Query: 412 IAATPFLV 419 + TP LV Sbjct: 240 VFITPRLV 247 >gi|320186741|gb|EFW61464.1| Type IV pilus biogenesis protein PilQ [Shigella flexneri CDC 796-83] Length = 386 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + + +I ++ + + + Sbjct: 66 HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T N+ A S+ ++ + +++ QV L I + L+++G + ++ + Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184 Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G V G ++ + L ALE+ + +A P L A Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I V V Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQV 304 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 365 DGKEYERRELVVFITPRLV 383 >gi|94500410|ref|ZP_01306942.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65] gi|94427445|gb|EAT12423.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65] Length = 696 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 33/269 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240 + +N+L++ + QV ++ I ++ + +G + S + G VS Sbjct: 428 RAINILDVPVK-QVLIEARIVVASTNVGENLGIRWGGGYGVLDGSDNLTLGGGLDTVSRF 486 Query: 241 ---------------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 F+ D + + L ALE ++ Sbjct: 487 NDGITAGSPVRDISETDSVINFPIAAANASTFAFGLSTDEYVLDLELSALESDGKAEIIS 546 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 +P + GQ+A +G + Y +S++GATS+ + + L TP + RI + + Sbjct: 547 QPRVITADGQTARIQAGTEIPY-EQASASGATSIVFKEAVLKLEATPQITPDDRILMDLI 605 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +++ +G +PS + +T V + +G TIVL G+ + + + P +P+ Sbjct: 606 --INKDAVGEIFNSIPSIDTNELETQVLVNNGETIVLGGIFQSEDITQVDKTPFFGDLPV 663 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422 +G LFR + +++E+ I TP LVK V Sbjct: 664 IGQLFRRTTRTEDKSELLIFITPRLVKDV 692 >gi|294670682|ref|ZP_06735557.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307570|gb|EFE48813.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 711 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 106/277 (38%), Gaps = 41/277 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 +K++ L++ QV ++ I E +Q+G + GS+ S Sbjct: 430 EKLIAELDVPAR-QVMVEARIVEAEDGFSRQLGVKFGYAGSNGKNSWGSNWANAGANRNS 488 Query: 232 ----------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + + ++ L + L A Sbjct: 489 YVDKQRTLANWSRNPSQDIPALPAWTVDPNVNLPIAAATSSIALVHALSSGALGLELSAQ 548 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + ++ ++ P + + A +G + Y+ SSS ++ + + + TP + Sbjct: 549 QAQNKLKIVSTPRVLTQDRKEAIIEAGTEVPYQEASSSGATST-SFKKAVLGMTVTPNIT 607 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G+I + I+ + V P ++ +T V + GGT++L G+ +++ + Sbjct: 608 PDGQIIMDIKINK-DSVNSDCRATEPCINTQRLNTNVMVEDGGTLILGGIYQEENSEGVS 666 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +PLL IP++G LF++ + ++TE+ I TP +V Sbjct: 667 KVPLLGDIPVVGNLFKSKTRSDKKTELLIFITPRIVD 703 >gi|260599692|ref|YP_003212263.1| outer membrane porin HofQ [Cronobacter turicensis z3032] gi|260218869|emb|CBA34224.1| Protein transport protein hofQ [Cronobacter turicensis z3032] Length = 390 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 67/333 (20%), Positives = 128/333 (38%), Gaps = 16/333 (4%) Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRR------FIADSNIRVEMVSDTVVLHGMVRTIQ 155 + + E+ R+ +A + + T + G+ Sbjct: 56 WRKESNILRVYPETWEQQTQAQREAARQQQERSLPLASETVTLRYAEATELAAGLAALGD 115 Query: 156 DSQR----AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 T A ++ + ++I QV L I + + L+ Sbjct: 116 KLMTPRGSITVDKRTNRLLIRDTASALRQVQEWVAKMDIP-VGQVELAAHIVTINQQSLR 174 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATA 268 ++G + S + + G +D E L ALE+ Sbjct: 175 ELGVKWSTADAEGATKLYHPTTVSADLAVANATTRLGFNIGRIDGRMLEFELSALEQKQK 234 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + +A P L A Q AS G + Y+ S +GATSV + + + TPT+ GRI Sbjct: 235 VEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTIGQGGRI 294 Query: 329 GLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 L+++ + P + G++ + ++ +T VE+ G T+ L G+ + + E +P Sbjct: 295 RLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGETLALGGIFQQKNKTGNEQVP 354 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +L IP+LG+LFR+ ++E+ E+ + TP ++ Sbjct: 355 VLGNIPLLGSLFRHDGKDKEKRELVVFITPRII 387 >gi|304310058|ref|YP_003809656.1| General secretion pathway D protein, outer membrane secretin [gamma proteobacterium HdN1] gi|301795791|emb|CBL43990.1| General secretion pathway D protein, outer membrane secretin [gamma proteobacterium HdN1] Length = 721 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 69/389 (17%), Positives = 128/389 (32%), Gaps = 46/389 (11%) Query: 77 ADVVVHSPRTMYLFGKNVGQ-ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 AD V S L G GQ G Q + + + + S Sbjct: 288 ADAVKISE---VLRGIVTGQATTPTSTTAGGMQTASRTPGSSFGNSSAGLGGNSSMGMSG 344 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGE 193 V + G T + ++ L+ + + ++ L++ Sbjct: 345 AGVSSSTSR--QRGT-STPIQAGNITIQADDTLNALVVRASPSDMGEIRSLIKQLDVR-R 400 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---------- 243 QV ++ I EV +G Q + + ++ G + G Sbjct: 401 AQVLIEAAIVEVTGSAGNSLGVQWGAANENRVVGGTNFSNVGNSISALLGAALSSSGSDS 460 Query: 244 --------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + + F +L A+ A+ L+ P++ + + Sbjct: 461 TGTTSSTTTTMPTLSNGITLGGGHRNSAGKVDFGLILQAVNTASNTNVLSTPSIMTLDNE 520 Query: 284 SASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A G + T + + +V D G+ L P V + I LR+ E S Sbjct: 521 EAEILVGQNVPFITGNQLSYSGTNPFQTVERKDVGLNLKVIPQVNAGDTISLRVTQEASS 580 Query: 339 PVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 N R +TT+ G IVL GL++D + + +PLL IP++GAL Sbjct: 581 IADSSNVKTTDVITNKRLINTTILASDGQVIVLGGLMEDTLSDAVQKVPLLGDIPLIGAL 640 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426 FR++ +E+ + + P +++ A + Sbjct: 641 FRSTSKVQEKRNLLLFLRPTVIRDDAKAE 669 >gi|328471682|gb|EGF42559.1| general secretion pathway protein D [Vibrio parahaemolyticus 10329] Length = 674 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 69/454 (15%), Positives = 153/454 (33%), Gaps = 84/454 (18%) Query: 49 KISIGLNKVIIL-QVPVDVQDV-LVSDPTKADVVVHSPRT---MYLFGKNVGQAN----- 98 I + + ++ ++ ++ V D V + + + + N Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKEIELVELRNASAAEMVRIVEALNKTTNQKSTP 220 Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145 ++ +++ D + + L L +A ++ D V Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190 VL G+ +Q ++A + + + A+ ++ V++ L+I Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------------- 219 QV ++ I E+ +G Q Sbjct: 341 R-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAVIQYGNTGAPIGQVMVGLEEAKDVTK 399 Query: 220 --------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 T + D+ + GG + + ++ A+ + Sbjct: 400 TESYWNSDTNKWENRQYTEEGDYSTLASALGGVNGAAMSIVMGDWTALISAVASDSNSNI 459 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPG 326 L+ P++T + ASF G + T ++ +V + G+ L P + Sbjct: 460 LSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGD 519 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + +P Sbjct: 520 SVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVP 578 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 LL IP+LG LF+++ E+ + + P +++ Sbjct: 579 LLGDIPVLGHLFKSTSTQTEKRNLMVFIKPTIIR 612 >gi|307245013|ref|ZP_07527110.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854178|gb|EFM86386.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 429 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%) Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + S K ++ L+ +Q+ ++ I + + L+++G + I ++G K + Sbjct: 152 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 211 Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + ++ + L ALE+ + +A P L Sbjct: 212 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 271 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + + AS G + Y S ++ + + L TP + + +I L + + P Sbjct: 272 NKKPASIKQGTEVPYVLYSRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPN 331 Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF Sbjct: 332 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 391 Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425 +S + E+ I TP++VK + Sbjct: 392 HSSDKISKRELVIFVTPYIVKNGQPQ 417 >gi|53728904|ref|ZP_00134621.2| COG4796: Type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|303250734|ref|ZP_07336930.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252023|ref|ZP_07338194.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649453|gb|EFL79638.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650404|gb|EFL80564.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 417 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%) Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + S K ++ L+ +Q+ ++ I + + L+++G + I ++G K + Sbjct: 140 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 199 Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + ++ + L ALE+ + +A P L Sbjct: 200 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 259 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + + AS G + Y + ++ + + L TP + + +I L + + P Sbjct: 260 NKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPN 319 Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF Sbjct: 320 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 379 Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425 +S + E+ I TP++VK + Sbjct: 380 HSSDKISKRELVIFVTPYIVKNGQPQ 405 >gi|325124244|gb|ADY83767.1| putative general secretion pathway protein [Acinetobacter calcoaceticus PHEA-2] Length = 756 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 102/267 (38%), Gaps = 30/267 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV Q+G Q ++ +SG + G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGKDADQLGVQWALGDINSGIGLINFTNAGSSLASL 440 Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278 + G S + ++ AL+ TA L+ P++ Sbjct: 441 AAGYLTGGASGLGSAIGAGSSIALGKYKEGADGSRQLYGALIQALKENTASNLLSTPSIV 500 Query: 279 AISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + A G + T S + T+V D GV L P + G + L I Sbjct: 501 TMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVRLEI 560 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EVS R T V G T+VL GL+ DD++ ++GIP LS IP Sbjct: 561 EQEVSNVQASKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGLSSIP 620 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 LG LFR+ + + + + P +V Sbjct: 621 YLGRLFRSDTRSNVKRNLLVFIHPTIV 647 >gi|77164279|ref|YP_342804.1| general secretion pathway protein D [Nitrosococcus oceani ATCC 19707] gi|254435433|ref|ZP_05048940.1| general secretion pathway protein D [Nitrosococcus oceani AFC27] gi|76882593|gb|ABA57274.1| General secretion pathway protein D [Nitrosococcus oceani ATCC 19707] gi|207088544|gb|EDZ65816.1| general secretion pathway protein D [Nitrosococcus oceani AFC27] Length = 833 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 71/340 (20%), Positives = 124/340 (36%), Gaps = 28/340 (8%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRD 208 + +D + V + + + +K++ L+ QV ++ TIAEV Sbjct: 488 AKDDEDKKPEVRVIPDVENNTLLISAPPPVYEKILVALHQLDIPPRQVLVEATIAEVTLT 547 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 Q G + + G + F+ + VL L T Sbjct: 548 DDLQYGVRWFFENT--GVKDYLGRGALTAAIPGTSTFTYGLFDAAGAARIVLDTLSSQTK 605 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLS 324 ++ L+ P L + Q+A G Q +T S T + D GV+L TP V + Sbjct: 606 VKVLSSPQLLVLDNQTAEIRVGDQIPIQTGSTIGIGGNSTTRIQFRDTGVLLTVTPRVNA 665 Query: 325 PGRIGLRIQTEVSEPVIG------------------VNAGDMPSYRVRKADTTVELPSGG 366 GR+ + + EV++ G+ P++ R + V + SG Sbjct: 666 GGRVTMELTQEVTDVGGTKLPTSAAPSGDGDDDNNNQTVGNNPTFLQRSFRSVVTVQSGD 725 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 TIVL GL++D+ + G+P L K+P++G LF + ++ TE+ + TP +V+ Sbjct: 726 TIVLGGLIRDNERFSDSGLPFLHKLPLIGPLFGATAKSKSRTELIVLMTPRVVRNQYEAR 785 Query: 427 LSRPDDH--YSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 L + D KE E + Sbjct: 786 LVTEEFREKLRNASDVAEEMGGIAPIAIPRKENKEKPSPS 825 >gi|251787909|ref|YP_003002630.1| putative outer membrane porin HofQ [Dickeya zeae Ech1591] gi|247536530|gb|ACT05151.1| type IV pilus secretin PilQ [Dickeya zeae Ech1591] Length = 433 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 75/397 (18%), Positives = 148/397 (37%), Gaps = 40/397 (10%) Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 V VQ VL + AD + + + G ++ L +Q L++ + + + Sbjct: 40 DVPVQRVLQA---LADHQQLN---LVVAPGVAGNVSLNLQQVPWQQALDIILRMGQLTLE 93 Query: 123 LEMTLRRFIADSNIR---------VEMVSDTVVLHGMVRTIQDSQRAVELSE-TFLSQSG 172 + ++ D+ ++ + L + T+Q ++ A ++ + Sbjct: 94 RQDSVMMVYPDTMMKDRQQKQEELAAKQRQQLPLQNVSVTLQYAEAADVVANLQSQRGTL 153 Query: 173 RNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIG 214 + N + K N L + QV L I + + LK +G Sbjct: 154 LTERGNVTVDKRTNTLLVRDVGSALEQIRPWIEELDKPLSQVQLAAHIVTISSEHLKALG 213 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRT 271 + + +F E + L+ + L ALE+ + Sbjct: 214 VNWGLGDGMATGQALQMNNFNVSLPIESPAINAGFHLAKLNGRLLDLELMALEQENEVEI 273 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G + Y+ S ++G+TS+ + + + TP +L G+I L Sbjct: 274 IASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPRILHGGQITLN 333 Query: 332 IQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + + P + G++ + ++ T V + G TIVL G+ + Q + +P L Sbjct: 334 LLISQNMPGRAIKQGENGEILAIDKQEIQTQVTVQDGETIVLGGIFQQQKNQAERQVPGL 393 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +P +GA FR+ E+ I TP L++ + Sbjct: 394 GALPGIGAWFRSGNRQHTRRELVIFITPTLIQAAKRK 430 >gi|145588279|ref|YP_001154876.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046685|gb|ABP33312.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 353 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 95/240 (39%), Gaps = 12/240 (5%) Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------SKSFAADFGGKFVS 240 +I Q+ ++ I E +++G + + +G + F Sbjct: 116 HINSPSQILIEARIVEADERFARELGVKIGQQANLAGSRTDKKISANLDLGGAGLNGFNP 175 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 ++ + L ALE + L+ P + A+ G + Y+T S Sbjct: 176 ATVAATLLSKDASRLLQMELSALESEGQGKILSNPRIMTGDQVKATIEQGTELPYQTTSQ 235 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + + + + L P + G+I + +++ IG+ + + + V Sbjct: 236 NG--SKLQFRKANLRLEVLPKIHPDGKISML--VGINKDTIGMKTEQGYAIDTKSLSSEV 291 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +GGT ++ G+ + ++ + IPLL IP+ G LFR+ +++TE+ + TP ++ Sbjct: 292 TVENGGTAIIGGIYQTTEREDEVKIPLLGDIPLFGHLFRHKSKLKDKTELLVFLTPTVLD 351 >gi|224370094|ref|YP_002604258.1| GspD2 [Desulfobacterium autotrophicum HRM2] gi|223692811|gb|ACN16094.1| GspD2 [Desulfobacterium autotrophicum HRM2] Length = 761 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 61/305 (20%), Positives = 114/305 (37%), Gaps = 18/305 (5%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 ++ I D + +++ G ++ S + + V+ Sbjct: 437 KKEINDPKTKARPTPNSI--SGS-SSLNTSINIIPDAIRNALIIEATPADYQVVLDVLKR 493 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L++ QV ++VT+AEV + +G + + + G +F Sbjct: 494 LDV-LPRQVLIEVTLAEVTLNDSSSLGVEWTFIKDGGSVADGLIQGTLGSTNVLQYNFG- 551 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--- 304 + + L AL + L+ P++ A + A + T G Sbjct: 552 ----NTQKWAATLTALASKGDVNILSSPSVLASDNKEAKIDISTEVPVVTTEYKYGTDGD 607 Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADT 358 T++ + GV+L TP + G + + I EVSE V + PS+ R T Sbjct: 608 DMLATNIQYRNTGVILTVTPHINERGLVSMEINQEVSEQADAVLAGGQEYPSFYKRSVQT 667 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 T+ + TI + GL++ + GIPLL+++P LF + E+ E+ I TP + Sbjct: 668 TLTVNDNQTIAIGGLMRKKEEDSSAGIPLLNQLPFFKYLFGKTAGGNEKNELIILITPRV 727 Query: 419 VKPVA 423 V + Sbjct: 728 VSDLD 732 >gi|300690062|ref|YP_003751057.1| general Secretory Pathway protein D, type II secretion system [Ralstonia solanacearum PSI07] gi|299077122|emb|CBJ49746.1| General Secretory Pathway protein D, type II secretion system [Ralstonia solanacearum PSI07] Length = 805 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 71/323 (21%), Positives = 115/323 (35%), Gaps = 45/323 (13%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235 A QV ++ I EV D Q+G Q + +FG Sbjct: 429 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVIAAT 488 Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G VS + +L AL ++ L+ P Sbjct: 489 VGSGGIGSTAAQTALSGITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 548 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G T S + T + D G+ L P + G + Sbjct: 549 LITLDNEEAKILIGQNVPITTGSYAQTGSAASVTPFQTFDRKDVGITLRVKPQITDGGLV 608 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P Sbjct: 609 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDAEQKVPG 668 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-FFFN 446 L IP+LGALFR+ R++T + + P++++ A + D+ Y+ D + F Sbjct: 669 LGDIPVLGALFRSESKQRKKTNLLVFLRPYILR-TAEATGALSDNRYNYMRDTQQGFVSP 727 Query: 447 RVNKIYGPKEASEVEGQNYKGAI 469 V ++ + + Sbjct: 728 NVLPTTSDRDTPVLPSPDSMRPA 750 >gi|300702828|ref|YP_003744429.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957] gi|299070490|emb|CBJ41785.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957] Length = 713 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231 QV ++ I E + +G + ++G + Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNSYTNVTSPVTTNGTWTTDPAVSL 520 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV + L TP + G + L +V++ +G + + Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLD--VDVNKDSVGTQTTNGFA 637 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+ Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 698 LVFLTPRVL 706 >gi|73542815|ref|YP_297335.1| type II and III secretion system secretin [Ralstonia eutropha JMP134] gi|72120228|gb|AAZ62491.1| type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal [Ralstonia eutropha JMP134] Length = 706 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 23/257 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------S 222 + +N ++I QV ++ I E + +G + G S Sbjct: 447 QGFLNKIDIPVR-QVIIEARIVEATDTFSRNLGVKLGFAGQYNNARVGNTYSNVLPGANS 505 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 +GP S A S+ L ALE + ++ P + + Sbjct: 506 DNGPFLSLPAGAINGTNPANIAVSIFNSAATRFLALELSALEADGKGKIISSPRVVTANN 565 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A G + Y+ +SS GATSV + L TP + G + L +V++ +G Sbjct: 566 IKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVTPQITPEGNVLLD--VDVNKDSVG 622 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + + T V + +GGT+V+ G+ + +P L IP+LG LF+N+ Sbjct: 623 IQTTSGFAIDTKHVQTQVLVDNGGTVVIGGIYTQTESTDVDKVPFLGDIPVLGYLFKNNA 682 Query: 403 FNREETEIFIAATPFLV 419 R TE+ + TP ++ Sbjct: 683 KVRNRTELLVFLTPRVL 699 >gi|225077283|ref|ZP_03720482.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens NRL30031/H210] gi|224951427|gb|EEG32636.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens NRL30031/H210] Length = 710 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 30/279 (10%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSS 223 N+ +K+++ L++ QV ++ I E + +G + GS+ Sbjct: 428 TDNRGVIEKFRKLIDELDVPTR-QVMVEARIVEAEDTFFRNLGVKFGFVGAKGSRAWGSN 486 Query: 224 SGP-------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + S + + ++ + + A E Sbjct: 487 WSNAQTNYSTKFSSDRGDVDYPTWSLEPNVSLPTAAAVNSIALVRAFSSGALGLEISASE 546 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +T++ P + + A SG + Y+ +SS GATS+T + L TP + Sbjct: 547 EQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEAASS-GATSITFKKAVLGLTVTPNITP 605 Query: 325 PGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G+I + ++ P V++ + +T + GGT+++ G+ +++ Sbjct: 606 DGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVN 665 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +P+L IP++G LF++ E+ I TP ++ V Sbjct: 666 KVPVLGDIPVVGNLFKSRGKRENRRELLIFITPHIMDNV 704 >gi|254429767|ref|ZP_05043474.1| general secretion pathway protein D [Alcanivorax sp. DG881] gi|196195936|gb|EDX90895.1| general secretion pathway protein D [Alcanivorax sp. DG881] Length = 694 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 87/458 (18%), Positives = 159/458 (34%), Gaps = 50/458 (10%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 + L P L + ANA +I+ I + + I L+ V V Sbjct: 141 LVPVLRPLVPQYGHLAAVGSANALIISDHMDNIRRMEAIIASLDSAESEDVQVIKLKYAF 200 Query: 72 SDPTKADVVVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAHLEMTLR-R 129 + + +P+T GK G V+ + ++ D + + + + +L Sbjct: 201 AGDMVKMLESLTPQTGGRRGKTPEGGVTVVADERTNRLIIKGDRVTRQRMVQMIRSLDTE 260 Query: 130 FIADSNIRVE--MVSDTVVLHGMVRTIQDSQRAVEL---SETFLSQSGRNQYANSSSKKV 184 + ++V D L +++ D + S+T + S N + + + Sbjct: 261 ETDNGGVQVIRLSHGDAKTLAELLKNFADGASVTKAGGDSKTATAASSNNSKVSIQADES 320 Query: 185 MNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +N L I Q+ ++ I E+ + K +GFQ+ + SG Sbjct: 321 LNALVIRAEPSMMRELQSVISQLDVRRAQILIEAAIVEISGEQGKNLGFQYVGGSNESGV 380 Query: 227 SKSFAADFGGKFVSE------------------GGDFSVKGVLDRFSFETVLHALERATA 268 G S + ++ AL ++ Sbjct: 381 GAVNFGGGGLSINSIVQALATDDPSGLSLGDGITAGLGETDSNGDLKWGALVQALSTSSD 440 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLHFTPT 321 + L+ P++ + + AS G + T S+ T++ D G+ L TP Sbjct: 441 VNLLSTPSILTLDNEEASIVVGENVPFVTGQSTNTGSGVSNPFTTIQREDVGLTLKVTPH 500 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 V I L ++ E S RK +TV TI L GL+KDDI+ Sbjct: 501 VAGLSTIRLELEQENSAVKDSAGDAVDIVTTTRKLQSTVLADDAETIALGGLIKDDIRVT 560 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP LG LFR++ +R ++ + + P ++ Sbjct: 561 VRKVPLLGDIPFLGFLFRSTSKDRVKSNLMVFLKPTIL 598 >gi|152998114|ref|YP_001342949.1| type II and III secretion system protein [Marinomonas sp. MWYL1] gi|150839038|gb|ABR73014.1| type II and III secretion system protein [Marinomonas sp. MWYL1] Length = 393 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 5/227 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + IA+V R Q G S G S ++ + Sbjct: 168 KQIEISAQIAQVSRTAQSQFGVNWQAK-LSDGVRSSIGGAVDLGALTPTTSLDFSSIGGS 226 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 L +E +++P + G A SG + Y+TV S S+ Sbjct: 227 GLLALTLDMMESEGLANVVSKPKIVTSEGLPARIESGTEVPYQTV--SDDKVSIEFRQAV 284 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 ++L TP V G I L + + +G +PS + + T V + + T+VL G+ Sbjct: 285 LMLEVTPFVKDSGHILL--SLTIHQDSVGDLVNGVPSLKTNRLKTQVVVKNQETLVLGGV 342 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++ + + +P S IP LG LF+ +E+ E+ + TP L++ Sbjct: 343 FREERFESESRVPFFSDIPWLGELFKRQSEQQEKVELLVFITPKLLQ 389 >gi|330875847|gb|EGH09996.1| general secretion pathway protein D [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 775 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 62/307 (20%), Positives = 110/307 (35%), Gaps = 21/307 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVR 206 G + + + ++ S + + K++ + + QV ++ I EV Sbjct: 455 GSNASSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 514 Query: 207 RDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 +G Q S T + + G + + + + Sbjct: 515 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 574 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDY 312 L ALE + L+ P+L ++ Q A G S +T ++ V Sbjct: 575 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 634 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIV 369 GV+L P + G + + IQ +VS N P R T V SG T++ Sbjct: 635 GVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRSVSTQVAAQSGQTVL 694 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + + Sbjct: 695 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLITPRVI--TSSSQARQ 752 Query: 430 PDDHYSV 436 D Y Sbjct: 753 VTDDYRQ 759 >gi|121997138|ref|YP_001001925.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila SL1] gi|121588543|gb|ABM61123.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila SL1] Length = 538 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 87/461 (18%), Positives = 157/461 (34%), Gaps = 69/461 (14%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKI---------SIGLNKVIILQVPVDVQD 68 + P + +I+ +G + ++ ++ + ++ + ++D Sbjct: 65 ALGAPGLGDPLALQPEDPRFDITADGVGAREFFHGLVEDTPYNVVVHPDLEGELSLTLRD 124 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK-QMLNLDILIERDIAHLEMTL 127 V V P D V R +Y + + +++ + ++ +LD L H + Sbjct: 125 VSV--PEVMDTV----REIYGYEYKQARTGFLILPARPRAEVFHLDYLNVHRSGHSGTRV 178 Query: 128 RRFIADSNIRVEMVSDTVVLH--GMVRTIQDSQRAVELSETFLSQSGRNQYANSSS---- 181 I E D V+ + E + S Sbjct: 179 TS----GEITGEDDGDGVIGSRVDTASNSDLWGQVEETVSRMIDDDDTASVVASPQAGTL 234 Query: 182 ------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 + ++ L + QV L+ I EV Q G G G + Sbjct: 235 AVRGMPESLRRVEAFVDRLQGSLNRQVILEARILEVELGDDFQAGISWESLGRHDGQALE 294 Query: 230 FAADFGGKF-VSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQS 284 + G +S G F++ + FE L ALE+ ++ L+ P ++ ++ Q Sbjct: 295 GSFRPGDNLELSSAGVFNIGITRGQDGQRGFFEGFLRALEQQGDVQVLSTPQVSTLNNQK 354 Query: 285 ASFTSGGQHLYKTVSSSTGAT---------------SVTTHDYGVVLHFTPTVLSPGRIG 329 A +G Y+T S T G+ L TP + G I Sbjct: 355 AVIKAGTDSFYQTDFSINYRTVEVGGQTTTQPELDPDFEPFFSGIALDVTPQIEESGWIN 414 Query: 330 LRIQTEVSEPVI------GVNAGDMPSYR-----VRKADTTVELPSGGTIVLAGLLKDDI 378 L +Q V+E D + VR++D+ V SG IV+ GL+++ Sbjct: 415 LHVQPSVTEVRERERTLRTGRGDDEVRFSLAESDVRQSDSIVRARSGEMIVIGGLIEERE 474 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 QQ +PLL ++P+LG LF R + E+ I P +V Sbjct: 475 QQETSRVPLLGRVPLLGWLFTQERQESSKYELVILLRPRVV 515 >gi|299065327|emb|CBJ36496.1| General Secretory Pathway protein D, type II secretion system [Ralstonia solanacearum CMR15] Length = 805 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 109/294 (37%), Gaps = 44/294 (14%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235 A QV ++ I EV D Q+G Q + +FG Sbjct: 429 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVIAAT 488 Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G VS + +L AL ++ L+ P Sbjct: 489 VGSGGIGSTAAQTALSSLTGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 548 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G T S + T + D G+ L P + G + Sbjct: 549 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGTV 608 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P Sbjct: 609 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVIANDGQVIVLGGLLEDNYQDSEQKVPG 668 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 L IP+LGALFR+ R++T + + P++++ A + D+ Y DA+ Sbjct: 669 LGDIPVLGALFRSESKTRKKTNLLVFLRPYILR-TAEATGALSDNRYGYMRDAQ 721 >gi|157372484|ref|YP_001480473.1| general secretion pathway protein D [Serratia proteamaculans 568] gi|157324248|gb|ABV43345.1| general secretion pathway protein D [Serratia proteamaculans 568] Length = 660 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 119/320 (37%), Gaps = 22/320 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTV-VLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 L L A+ + V + V V+ MV + A+ + Sbjct: 292 YAKAQGLLEVLSGVSANLQDEKKTVGNNVSVMKNMVIKADEQTNALII--------NATP 343 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 S+ +KV+ L+I QV ++ I E++ +G Q + + A Sbjct: 344 DVMSNLEKVIEQLDIR-RAQVLVEAVIVEMQNADGLNLGIQWANRYGGGTQFGNAQAQIA 402 Query: 236 GKFVSEG-----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 F + ++ +L A+ + LA P++ + + A F+ G Sbjct: 403 PGFKGGMTEVFKNANGLVTGFYSGNWAGLLTAISNQSQNNILATPSIMTLDNEDAEFSVG 462 Query: 291 GQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA- 345 +T +S +V G+ L P + + L+I+ EVS + Sbjct: 463 QDVPILTGSQTTNSDNVFNTVARKTVGIKLKVKPQINKGQSVLLQIEQEVSSVAENSSVD 522 Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 ++ +R + TV + SG T+V+ GLL K +P L +IP+LGALFR++ Sbjct: 523 KDNLGATFNIRTVNNTVLVESGETVVVGGLLDKSQSDSKSAVPFLERIPLLGALFRSTSH 582 Query: 404 NREETEIFIAATPFLVKPVA 423 + + + P +++ Sbjct: 583 KESKRNLILFIRPTVIRSTE 602 >gi|83748197|ref|ZP_00945224.1| PilQ [Ralstonia solanacearum UW551] gi|207744528|ref|YP_002260920.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609] gi|83725165|gb|EAP72316.1| PilQ [Ralstonia solanacearum UW551] gi|206595934|emb|CAQ62861.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609] Length = 713 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231 QV ++ I E + +G + S+G Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFAAKSNGSGIGNTYSNVVSPVTTNGTWDNSSALSL 520 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV + L TP + G + L +V++ +G + + Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLD--VDVNKDSVGTQTTNGFA 637 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+ Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 698 LVFLTPRVL 706 >gi|207721850|ref|YP_002252288.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2] gi|206587017|emb|CAQ17601.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2] Length = 713 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231 QV ++ I E + +G + ++G + Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNSYTNVTSPITTNGTWTTDPAVSL 520 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV + L TP + G + L +V++ +G + + Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLD--VDVNKDSVGTQTTNGFA 637 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+ Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 698 LVFLTPRVL 706 >gi|194290974|ref|YP_002006881.1| fimbrial type IV assembly protein pilq precursor [Cupriavidus taiwanensis LMG 19424] gi|193224809|emb|CAQ70820.1| Fimbrial type IV assembly protein pilQ precursor [Cupriavidus taiwanensis LMG 19424] Length = 710 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 22/245 (8%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-------------------SSSGPSKSFAADF 234 QV ++ I E + +G + G S +GP S A Sbjct: 462 RQVIIEARIVEATDTFSRNLGVKLGFAGQYNNARVGNTYNNVLPGATSDNGPFLSLPAGS 521 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 S+ L ALE + ++ P + + A G + Sbjct: 522 INGTNPANIAVSLFNSAATRFLALELSALEADGKGKIISSPRVVTANNIKALIEQGTELP 581 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 Y+ +SS GATSV + L TP + G + L +V++ +G+ + + Sbjct: 582 YQAATSS-GATSVQFRKANLKLEVTPQITPEGNVLLD--VDVNKDSVGIQTTSGFAIDTK 638 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T V + +GGT+V+ G+ + +PLL IP+LG LF+N+ R TE+ + Sbjct: 639 HVQTQVLVENGGTVVIGGIYTQTESTDVDKVPLLGDIPVLGYLFKNNAKVRNRTELLVFL 698 Query: 415 TPFLV 419 TP ++ Sbjct: 699 TPRIL 703 >gi|134302144|ref|YP_001122113.1| type IV pilus secretin/type II and III secretion system protein [Francisella tularensis subsp. tularensis WY96-3418] gi|134049921|gb|ABO46992.1| type IV pilus secretin/type II and III secretion system protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 590 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 73/416 (17%), Positives = 155/416 (37%), Gaps = 34/416 (8%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84 P A + + + +++ ++ + + +D+++V P ++V+ S Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 L K + + + L++ +R + + + FI + + Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292 Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + +G + + + S A + T + K+V+N ++I DQV ++ Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTKEKLQRIKEVVNEIDIPN-DQVLIEA 349 Query: 201 TIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251 I EV R ++GF + + + G + + + G Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPTPVDTFVGTTAKLAY 409 Query: 252 ---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 E + ALE + +A P L + Q A F G+ + ++++GA +V Sbjct: 410 TIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVA 468 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELP 363 + + L TP + G I + I + P + R+ T V Sbjct: 469 FQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTK 528 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++ Sbjct: 529 DGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 584 >gi|331017211|gb|EGH97267.1| general secretion pathway protein D [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 361 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 101/261 (38%), Gaps = 19/261 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244 QV ++ I EV+ +G Q S T + + G + Sbjct: 87 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 146 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298 S + + L ALE + L+ P+L ++ Q A G Sbjct: 147 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 206 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355 +++T +SV GV+L P + G + + IQ +VS+ G + P R Sbjct: 207 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 266 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V SG T++L GL+K D + +P L +IP L LF NS +++ TE+ + T Sbjct: 267 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 326 Query: 416 PFLVKPVAMRDLSRPDDHYSV 436 P ++ + + D Y Sbjct: 327 PRVI--TSSSQARQVTDDYRQ 345 >gi|291619222|ref|YP_003521964.1| HofQ [Pantoea ananatis LMG 20103] gi|291154252|gb|ADD78836.1| HofQ [Pantoea ananatis LMG 20103] Length = 413 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 7/247 (2%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADFGGKF 238 + + L++ +QV L I + + L ++G + +++ G Sbjct: 164 RWIRALDVPL-EQVELAAHIVTISEEHLHELGVNWRLYNEGDVINRALRHPLLDIPLGLN 222 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + + L ALE+ + +A P L Q+AS G + Y+ Sbjct: 223 SHDVSVGVTLSRIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIKQGTEIPYEVS 282 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI--QTEVSEPVIGVNAGDMPSYRVRKA 356 + ++GATS+ + + + TP VL GRI L+I V + + S ++ Sbjct: 283 AGNSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDSQVLSIDKQEI 342 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V + G T+ L G+ + + +PLL +P++G+LFR + + E+ I TP Sbjct: 343 ETQVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQRKRELVIFMTP 402 Query: 417 FLVKPVA 423 LV+ A Sbjct: 403 RLVREAA 409 >gi|254673580|emb|CBA09077.1| fimbrial assembly protein [Neisseria meningitidis alpha275] Length = 687 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 422 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 480 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D + S+ + + L A E + +TLA P + + + Sbjct: 481 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 540 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 541 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 600 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 601 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 660 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 661 GKKTDRRELLIFITPRI 677 >gi|261341890|ref|ZP_05969748.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus ATCC 35316] gi|288315792|gb|EFC54730.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus ATCC 35316] Length = 403 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 5/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GV 250 DQV L I + L+++G + ++ +S G V G Sbjct: 170 DQVELAAHIVTINEKSLRELGVKWNLAEASEAGRVGEVTALGADLSVANATTHVGFNIGR 229 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +D + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 230 IDGRLLDLELSALEQKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 289 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP VL GR+ L++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 290 EAVLGMEVTPVVLPGGRVRLKLHISENMPGQVLQQADGETLAIDKQEIETQVEVKSGETL 349 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + + +P L +IP LG LFR+ + E E+ + TP LV Sbjct: 350 ALGGIFSQKNKTGSDSVPGLGRIPWLGQLFRHDGKDNERRELVVFITPRLV 400 >gi|189424703|ref|YP_001951880.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ] gi|189420962|gb|ACD95360.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ] Length = 891 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 102/264 (38%), Gaps = 22/264 (8%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227 + A +K++ L++ E QV ++ I E + +G I S Sbjct: 630 KDVKSAVDDMRKILASLDVP-EKQVMIEARIVEASSTFTQSLGVNWGIHYRDGSASIAGI 688 Query: 228 ------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + + S + + L+A A +R ++ P Sbjct: 689 NSMDTNFGGLASTAPTSSGVSGSPGAAAGISFGTLSSNIKLDLRLNAAVSAGLVRIVSTP 748 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + ++ +SA T G Q Y S++ + + L TP + G + ++I + Sbjct: 749 RVATLNHKSAKITQGQQIPYTA--STSDKIETKFVEAALALEVTPHINPNGTVVMKIDAK 806 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 P + G+ P+ ++A T + L G T V+ G+ + +G+P L+ +P LG Sbjct: 807 NDSP---GSTGNPPAINKKQATTEMMLRDGETTVIGGIFVESESNNDDGVPFLADVPWLG 863 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF+++ R E+ I TP ++ Sbjct: 864 GLFKSNETKRNRNELLIFITPRII 887 >gi|3978475|gb|AAC83352.1| outer membrane secretion protein Q [Pseudomonas alcaligenes] Length = 649 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 82/504 (16%), Positives = 167/504 (33%), Gaps = 69/504 (13%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV-----IILQVPVDVQDVLVS 72 P L + +NA +I+ I + +++ L+ ++ + Sbjct: 157 PLVPQNGHLAAVAASNALIISDRRANIERIRELIAELDAQGGGDYNVINLQHAW------ 210 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL----- 127 D + KN VI + +L + +A+L +L Sbjct: 211 ---VLDAAEALNNAVMRNEKNSAGTRVIADARTNRLILLGPPAARQRLANLARSLDIPST 267 Query: 128 --------RRFIADSNIRVEMVSD-----TVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 R +D+ E + D G Q + ++ L+ Sbjct: 268 RSANARVIRLRHSDAKSLAETLGDISEGLKTAEGGGEAASSKPQNILIRADESLNALVLL 327 Query: 175 QYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 ++ + ++++ L++ QV ++ I E+ DI +G Q ++ Sbjct: 328 ADPDTVATLEEIVRNLDVP-RAQVMVEAAIVEISGDISDALGVQWAVDARGG-TGGLGGV 385 Query: 233 DFGGKFVSEGGDF----------------SVKGVLDRFSFETVLHALERATAIRTLAEPT 276 +FG +S G + +F ++ AL + L+ P+ Sbjct: 386 NFGNTGLSVGTVLKAIQNEEIPDDLTLPDGAIIGIGTENFGALITALSANSKSNLLSTPS 445 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIG 329 L + Q A G ++T S + T++ D GV L TP + + Sbjct: 446 LLTLDNQEAEILVGQNVPFQTGSYTTDASGANNPFTTIEREDIGVTLKVTPHINDGATLR 505 Query: 330 LRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 L ++ E+S R + + G IVL GL++DD+ +P Sbjct: 506 LEVEQEISSIAPSAGVNAQAVDLVTNKRSIKSVILADDGQVIVLGGLIQDDVTSTDSKVP 565 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED------DA 440 LL IP++G LFR+++ + + + P +V+ + YS D Sbjct: 566 LLGDIPLIGRLFRSTKDTHVKRNLMVFLRPTIVRD-RAGMAALSGKKYSDISVLGADEDG 624 Query: 441 KAFFFNRVNKIYGPKEASEVEGQN 464 + +++ A V+ ++ Sbjct: 625 HSSLPGSAERLFDKPGAGAVDLRD 648 >gi|300690208|ref|YP_003751203.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07] gi|299077268|emb|CBJ49894.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07] Length = 717 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------------------F 230 QV ++ I E + +G + ++G F Sbjct: 465 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPVTTNGTWDNSPALSF 524 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 525 PANGINGVSAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 584 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV + L TP + G + L +V++ +G + + Sbjct: 585 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLD--VDVNKDSVGTQTTNGFA 641 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+ Sbjct: 642 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 701 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 702 LVFLTPRVL 710 >gi|269959419|ref|ZP_06173802.1| general secretion pathway protein D [Vibrio harveyi 1DA3] gi|269835856|gb|EEZ89932.1| general secretion pathway protein D [Vibrio harveyi 1DA3] Length = 675 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 68/453 (15%), Positives = 156/453 (34%), Gaps = 83/453 (18%) Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98 I + + ++ ++ ++ V + ++ S M + + Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKEIEVVELRNASASEMVRIVDALNKTTNQKSTP 220 Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145 ++ +++ D + + L L +A ++ D V Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190 VL G+ +Q ++A + + + A+ ++ V++ L+I Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSF------------- 230 QV ++ I E+ +G Q I ++G Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGNLETGAVIQYGNTGAQIGNVMVGLEEAKDQTR 399 Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 + D+ + GG + + ++ A+ + L Sbjct: 400 TEYYTNSDGERTPYDVTESGDYSTLAAALGGVNGAAMSIMMGDWTALITAVSSDSNSNIL 459 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + P++T + ASF G + T ++ +V + G+ L P + Sbjct: 460 SSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDS 519 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + +PL Sbjct: 520 VQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPL 578 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L IP++G LF+++ E+ + + P +++ Sbjct: 579 LGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIR 611 >gi|86146572|ref|ZP_01064894.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222] gi|85835629|gb|EAQ53765.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222] Length = 674 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 54/314 (17%), Positives = 116/314 (36%), Gaps = 48/314 (15%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + + + + + + + ++ + V+ L+I QV ++ I E+ Sbjct: 301 SSSQRNQVMISAHSDTNSLVITAQPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDG 359 Query: 211 KQIGFQHS-------ITGSSSGPSKSFA-------------------------------- 231 +G Q I S++G S Sbjct: 360 VNLGVQWGNLETGAMIQYSNTGASIGGVMVGLEEAKDSTTTKAVYDKDNNFLRNETTTEK 419 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D+ + G + + ++ A+ + L+ P++T + ASF G Sbjct: 420 GDYSTLASALSGVNGAAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVGE 479 Query: 292 QHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + T S + +V + G+ L P + + L+I+ EVS + A Sbjct: 480 EVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSNVLGANGAV 539 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+ + R+ +T+V + G +VL GL+ + + + +P L IP+LG LF+++ E Sbjct: 540 DV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVE 598 Query: 407 ETEIFIAATPFLVK 420 + + + P +++ Sbjct: 599 KKNLMVFIKPTIIR 612 >gi|312958540|ref|ZP_07773060.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6] gi|311287083|gb|EFQ65644.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6] Length = 460 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 68/464 (14%), Positives = 157/464 (33%), Gaps = 63/464 (13%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 ++RTF + + +A P + + ++ LN +++ Sbjct: 1 MKRTFLSFGVALWIAFTAPMAAAVPNRVDLIQLPAPGRAMSDGYAGDTLNLNFQN-IELR 59 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 +Q + A + + + + G + L Q L+L + + + Sbjct: 60 AVLQQIA----DVAGLNLVASDDV------QGTITLRLKDVPWDQALDLVLQAKGLDKRV 109 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR---------AVELSETFLSQSGRN 174 + + + + T+ + + +R A +L++ F S +G Sbjct: 110 KAGVLLVAPAEELAARELL-TLEARKQMADLAPLRRELLQVNYAKAADLAKLFQSMTGFE 168 Query: 175 QYANSSSK-----------------------KVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + +++ L+I QV ++ I E D K Sbjct: 169 GATDERGSVAVDDRTNNIIAYQTSERLEELRRIVAQLDIPVR-QVMIEARIVEANVDYDK 227 Query: 212 QIGFQHSITGSSSGPSKSFAADFGG-----------------KFVSEGGDFSVKGVLDRF 254 +G + + + ++ + + D Sbjct: 228 SLGARWGGAINRGNWAAGGIRKPVPDGEAPPENLPSSPFVDLGSLTGTSGLGIAYITDNL 287 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + L A+E+ +++P + ++A G + Y+ +S GATSV+ + + Sbjct: 288 LLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQES-TSQGATSVSFKEASL 346 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L TP + + + ++ EP D+P + + + V + G TIV+ G+ Sbjct: 347 SLEVTPQITPDNHVIMVVKVTKDEPDYLNKLNDVPPIKKNEVNAKVLVKDGETIVIGGVF 406 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + ++ + +P L +P LG LFR +++E+ + TP + Sbjct: 407 SNTQSKVVDKVPFLGDVPYLGRLFRRDVLAEKKSELLVFLTPRI 450 >gi|323939252|gb|EGB35464.1| general secretion pathway protein D [Escherichia coli E482] Length = 504 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 156 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 214 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDR--- 253 +G Q + + + G S + + + Sbjct: 215 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 274 Query: 254 ----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 275 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 334 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 335 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 394 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PLL IP++G LFR + R + + + P +++ Sbjct: 395 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 449 >gi|294788170|ref|ZP_06753413.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453] gi|294483601|gb|EFG31285.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453] Length = 700 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 66/419 (15%), Positives = 146/419 (34%), Gaps = 39/419 (9%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPRTMYLF 90 + + K I+I + + ++ + ++DV P +A +V S R + + Sbjct: 281 FQDIEVRTVLQILAKESGINIVASDSVQGKMTLSLKDV----PWDQALDLVLSARDLVM- 335 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--- 147 + G IL + K+ D + L + + VE + D + L Sbjct: 336 -EKNGNIINILTNAESKKRRLEDAEDRAKLDDLIPLVSQTFQLKYKNVEELRDVLKLDQR 394 Query: 148 ---HGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 G ++ + + + T ++++ L++ QV ++ I Sbjct: 395 GNDSGTSGSLLTKRGSARVDPATNTLIVKDTSTVIQEFQRLIEELDVPAR-QVMVETRIV 453 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----------------------FVSE 241 E + + +G + + + + + Sbjct: 454 EADVSVGRDLGIKLGYARAGRTGVGNTYNNALNNRNVGVGASTGVIDISPNINLPTVATA 513 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + + L A+E +T++ P + + A G Q Y+ + Sbjct: 514 TTALGLIRSFGSSALSLELSAMEEENRSKTISSPRVLTQDRKEAEIRQGTQIPYQ-TRDA 572 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTV 360 G+ + D + + TP + I L + +NA P+ V++ T Sbjct: 573 DGSYTTAFKDAVLSMKVTPRITPDNNIILDVTINKDNVDNTRINADGEPAISVKQVKTQA 632 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +GGT+V+ G+ ++ I +PLL +P+LG LF++ N + +E+ TP ++ Sbjct: 633 MVENGGTLVVGGVYQEQISNNISKVPLLGDVPVLGNLFKSKSRNHQRSEVLFFITPRII 691 >gi|262402018|ref|ZP_06078583.1| type II secretory pathway component PulD [Vibrio sp. RC586] gi|262351990|gb|EEZ01121.1| type II secretory pathway component PulD [Vibrio sp. RC586] Length = 675 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 50/321 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204 G + + V ++ + S +V+ L+I QV ++ I E Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVITAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352 Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231 + +G Q I ++G S Sbjct: 353 MSEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKKPIRNSDTGEIKY 412 Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D+ + G + + +++A+ + L+ P++T + Sbjct: 413 YEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGE 472 Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 ASF G + T ++ +V + G+ L P + + L I+ EVS Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLIDERAIESESKVPLLGDIPVLGQLFR 591 Query: 400 NSRFNREETEIFIAATPFLVK 420 ++ E+ + + P +++ Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612 >gi|269103695|ref|ZP_06156392.1| putative type II secretory pathway component EpsD [Photobacterium damselae subsp. damselae CIP 102761] gi|268163593|gb|EEZ42089.1| putative type II secretory pathway component EpsD [Photobacterium damselae subsp. damselae CIP 102761] Length = 579 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 58/317 (18%), Positives = 117/317 (36%), Gaps = 47/317 (14%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEV 205 G ++ S+ V ++ + S +K +++ L+I QV ++ I EV Sbjct: 204 GQAKSASSSKNEVSINADKGTNSLVISAPPDLMRKLKDIISQLDIR-RAQVHIEAMIVEV 262 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------------- 240 + G Q + G V+ Sbjct: 263 QEGDGLNFGVQWGSEDGGIIQYGNSPVGIGSYMVAKKEAEDQTKVETRYDSDGKPYTYET 322 Query: 241 ------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 GG + + +++A+ L+ P++T + Q A + Sbjct: 323 KESGDYSSLAKLLGGVNGTAVAIAMGDWTALVNAVRTNRNANVLSTPSITVLDNQEAELS 382 Query: 289 SGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G + +T ++ T+V D G+ L TP + + L I+ VS+ Sbjct: 383 VGQEVPVQTGSTSSSNNDNPFTTVERKDVGIQLTVTPQINEGDSVKLDIKQVVSQVADAQ 442 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 A D+ + R+ +T V + G I L G++++ + + +P+L IP+LG+LFR++ Sbjct: 443 GAVDI-RFDKRELNTAVLVKDGSMIALGGMMQEKALESESKVPILGDIPVLGSLFRSTNN 501 Query: 404 NREETEIFIAATPFLVK 420 +T + I P +++ Sbjct: 502 ETVKTNLLIFIKPTIIR 518 >gi|52841166|ref|YP_094965.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628277|gb|AAU27018.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 698 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 117/312 (37%), Gaps = 30/312 (9%) Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAG 192 I +D VL + S R + + + +++ L+I Sbjct: 372 QINYAKAADIAVLIKDKQNSLLSDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPV 431 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------- 233 + QV ++ I EV +D + IG + ++ + A+ Sbjct: 432 K-QVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLN 490 Query: 234 ------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 ++ + D + L ALE ++ P L + Q A+ Sbjct: 491 LDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAV 549 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G+ + ++S+GAT+V + L TP + G+I + +Q P Sbjct: 550 IESGEEIPYQEATSSGATAVAFKKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLG 608 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P+ ++ T V + +G TIVL G+ K D ++ IP ++P++G LF N + + Sbjct: 609 VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKN 668 Query: 408 TEIFIAATPFLV 419 E+ I TP ++ Sbjct: 669 EELLIFITPRII 680 >gi|160896756|ref|YP_001562338.1| general secretion pathway protein D [Delftia acidovorans SPH-1] gi|160362340|gb|ABX33953.1| general secretion pathway protein D [Delftia acidovorans SPH-1] Length = 819 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 108/242 (44%), Gaps = 14/242 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------FVSEGGD 244 Q+ ++ +I EV + Q G Q + +G S + + G Sbjct: 536 PTQILIEASIVEVTLNDGLQYGLQWAFSGDVGNNGYSGSGLISTDGKRTTADIAAAIGQG 595 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTV 298 F+ + + L+AL T ++ +A P+L + +A+ + G Q Y T Sbjct: 596 FNYTLKNSAGTIKAALNALSSKTNVKVVASPSLMVLDNHTAAISVGTQQPYRSGEISTTT 655 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 S+ A S D GV L TP+V + + + + V++ ++ R+ + Sbjct: 656 VGSSNAVSYQYKDTGVNLQVTPSVNAGNIVTMTVNQMVTDVGAKDEITQQVTFLQRQLSS 715 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + SG +IV+ GL++++ + GIP+L ++P++G LF ++ + TE+ + TP + Sbjct: 716 RVSVRSGESIVMGGLIQENTSDGRSGIPVLHELPVVGNLFGSTNNSMRRTELLVIITPRV 775 Query: 419 VK 420 V+ Sbjct: 776 VR 777 >gi|84386329|ref|ZP_00989357.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01] gi|84378753|gb|EAP95608.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01] Length = 674 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 54/314 (17%), Positives = 116/314 (36%), Gaps = 48/314 (15%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + + + + + + + ++ + V+ L+I QV ++ I E+ Sbjct: 301 SSSQRNQVMISAHSDTNSLVITAQPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDG 359 Query: 211 KQIGFQHS-------ITGSSSGPSKSFA-------------------------------- 231 +G Q I S++G S Sbjct: 360 VNLGVQWGNLETGAMIQYSNTGASIGGVMVGLEEAKDSETTTAVYDSDGKFLRNETTTEE 419 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D+ + G + + ++ A+ + L+ P++T + ASF G Sbjct: 420 GDYSTLASALSGVNGAAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVGE 479 Query: 292 QHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + T S+ +V + G+ L P + + L+I+ EVS + A Sbjct: 480 EVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSNVLGANGAV 539 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+ + R+ +T+V + G +VL GL+ + + + +P L IP+LG LF+++ E Sbjct: 540 DV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVE 598 Query: 407 ETEIFIAATPFLVK 420 + + + P +++ Sbjct: 599 KKNLMVFIKPTIIR 612 >gi|257464993|ref|ZP_05629364.1| type II secretory pathway, component HofQ [Actinobacillus minor 202] gi|257450653|gb|EEV24696.1| type II secretory pathway, component HofQ [Actinobacillus minor 202] Length = 442 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 97/252 (38%), Gaps = 16/252 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPSKSFAADFGGKFVSEG 242 +Q+ ++ I + + L ++G + + G+ G + F G Sbjct: 181 TEQIAIEARIVTISSENLHELGVRWGMLSPNTSHSRLGGTLEGNGVDSTKNLNVNFPVSG 240 Query: 243 GDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G +V ++ + L ALE+ ++ +A P L + + AS G + Y Sbjct: 241 GASAVLQVASINSKVLDLELSALEQENSVEIIASPRLLTTNKKLASIKQGTEIPYAIYDR 300 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356 + V + + L TP + +I + + + V + S ++ Sbjct: 301 KSETYDVEFKEAVLGLQVTPHISKDNQILMDLVVTQNSQGQSVVSSTSGNAAVSIDKQEL 360 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ + + + +P+L IP L LF + + E+ I TP Sbjct: 361 NTQVFAKHGETIVLGGIFQHLKTKDSDRVPVLGSIPFLKHLFSYQKDQISKRELVIFVTP 420 Query: 417 FLVKPVAMRDLS 428 ++++ + L Sbjct: 421 YIIQANDINALP 432 >gi|261381191|ref|ZP_05985764.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703] gi|284795810|gb|EFC51157.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703] Length = 710 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 30/279 (10%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSS 223 N+ +K+++ L++ QV ++ I E + +G + GS+ Sbjct: 428 TDNRGVIEKFRKLIDELDVPTR-QVMVEARIVEAEDTFFRNLGVKFGSGGASGRNAWGSN 486 Query: 224 SGP-------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + S + + ++ + + A E Sbjct: 487 WSNAQTNYNTNASFNRGDVRYPTWSLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASE 546 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +T++ P + + A SG + Y+ SS+GATS+T + L TP + Sbjct: 547 EQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEA-SSSGATSITFKKAVLGLTVTPNITP 605 Query: 325 PGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G+I + ++ P V++ + +T + GGT+++ G+ +++ Sbjct: 606 DGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVN 665 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +P+L IP++G LF++ E+ I TP ++ V Sbjct: 666 KVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNV 704 >gi|291285874|ref|YP_003502691.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615] gi|290765747|gb|ADD59707.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615] Length = 656 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 115/308 (37%), Gaps = 34/308 (11%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192 VL G+ I++ + +E + +++ + V++ L+I Sbjct: 285 VLTGISSNIENDAKKSSSTEALRKGVTIKSHEQTNALILTGAPDVIRDLENVISQLDIRR 344 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------------KFV 239 QV ++ IAEV+ +G Q S S + Sbjct: 345 P-QVLVEAIIAEVQDADGLNLGIQWVNKHSGVTQFTSTGLPITTMVQTRQSDISDSDQSN 403 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + + + ++ +L AL ++ LA P++ + A+F G + + S Sbjct: 404 TLSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGS 463 Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYR 352 +T +V G+ L P + + L I+ EVS + + ++ Sbjct: 464 QTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFN 523 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + + +G T+V+ GLL I+ + +PLL IP+LG LF + + + + + Sbjct: 524 TRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLML 583 Query: 413 AATPFLVK 420 P +++ Sbjct: 584 FIRPTIIR 591 >gi|220931453|ref|YP_002508361.1| type II and III secretion system protein [Halothermothrix orenii H 168] gi|219992763|gb|ACL69366.1| type II and III secretion system protein [Halothermothrix orenii H 168] Length = 881 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 65/326 (19%), Positives = 126/326 (38%), Gaps = 52/326 (15%) Query: 106 GKQMLNLDILIER-DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G+++ + ++ ++ +L ++ D ++ + +++ G + Q V L Sbjct: 300 GEEIDTEVVRVDYGNLDNLISVIQGLFPDIRLQSNPLKKEIIIKG---NTSEVQEIVSL- 355 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 +N L+I QV ++ E+ + + + G + +++ Sbjct: 356 --------------------VNSLDIP-RRQVIIEARFEEISANKISEFGMRPNLSEIQF 394 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 ++ + L LE LA P L ++G++ Sbjct: 395 IFDEATRELKSMNIT----------------WPEYLRFLEEEGQANMLANPRLLTLNGEN 438 Query: 285 ASFTSGGQHL---------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 A G + + + A S D G+ L FTP + G I + + E Sbjct: 439 ARLLIGDKVPVKIEETSGSSEESEGESNAVSYEYIDVGISLEFTPWITEDGYIIMDVAPE 498 Query: 336 VSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VS +P + R+A T + L G T + GL+++D + +PLL IP+L Sbjct: 499 VSSLGSPMGGGESIPPIKTREARTKIRLKDGQTFAIGGLIREDELESIAKVPLLGDIPLL 558 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G LFR S+ ++ +TE+ I TP +VK Sbjct: 559 GTLFRRSQTDKVKTEVVIFITPHIVK 584 >gi|54293906|ref|YP_126321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila str. Lens] gi|53753738|emb|CAH15196.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila str. Lens] Length = 698 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 57/290 (19%), Positives = 111/290 (38%), Gaps = 28/290 (9%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 D + + T ++++ L+I + QV ++ I EV +D + IG Sbjct: 394 SDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPVK-QVLIEARIVEVTKDFSQDIG 452 Query: 215 FQHSITGSSSGPSKSFAAD-------------------------FGGKFVSEGGDFSVKG 249 + ++ + A+ ++ Sbjct: 453 IRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLNLDLAAAPLTGATPASVGIALAK 512 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + D + L ALE ++ P L + Q A+ G+ + ++S+GAT+V Sbjct: 513 LNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAVIESGEEIPYQEATSSGATAVAF 571 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + L TP + G+I + +Q P +P+ ++ T V + +G TIV Sbjct: 572 KKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLGVPAIITKEIQTNVLVNNGQTIV 630 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ K D ++ IP ++P++G LF N + + E+ I TP ++ Sbjct: 631 LGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680 >gi|319639388|ref|ZP_07994138.1| type IV pilus biogenesis and competence protein pilQ [Neisseria mucosa C102] gi|317399283|gb|EFV79954.1| type IV pilus biogenesis and competence protein pilQ [Neisseria mucosa C102] Length = 710 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 30/279 (10%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSS 223 N+ +K+++ L++ QV ++ I E + +G + GS+ Sbjct: 428 TDNRGVIEKFRKLIDELDVPTR-QVMVEARIVEAEDTFFRNLGVKFGSGGASGRTAWGSN 486 Query: 224 SGP-------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + S + + ++ + + A E Sbjct: 487 WSNAQANHNTNASFNRGDVGYPTWSLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASE 546 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +T++ P + + A SG + Y+ SS+GATS+T + L TP + Sbjct: 547 EQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEA-SSSGATSITFKKAVLGLTVTPNITP 605 Query: 325 PGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G+I + ++ P V++ + +T + GGT+++ G+ +++ Sbjct: 606 DGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVN 665 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +P+L IP++G LF++ E+ I TP ++ V Sbjct: 666 KVPILGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNV 704 >gi|260551051|ref|ZP_05825255.1| type II secretory pathway [Acinetobacter sp. RUH2624] gi|260405818|gb|EEW99306.1| type II secretory pathway [Acinetobacter sp. RUH2624] Length = 758 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 101/269 (37%), Gaps = 32/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 242 GGDFSVKGVLDRFS-------------------------FETVLHALERATAIRTLAEPT 276 + G S + ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGTAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S + T+V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP +G LFR+ + + + + P +V Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649 >gi|218708199|ref|YP_002415820.1| type II secretory pathway subunit EpsD [Vibrio splendidus LGP32] gi|218321218|emb|CAV17168.1| Type II secretory pathway, component EpsD [Vibrio splendidus LGP32] Length = 674 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 54/314 (17%), Positives = 116/314 (36%), Gaps = 48/314 (15%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + + + + + + + ++ + V+ L+I QV ++ I E+ Sbjct: 301 SSSQRNQVMISAHSDTNSLVITAQPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDG 359 Query: 211 KQIGFQHS-------ITGSSSGPSKSFA-------------------------------- 231 +G Q I S++G S Sbjct: 360 VNLGVQWGNLETGAMIQYSNTGASIGGVMVGLEEAKDKTVDRVVTPSDGSKPYTVKETEK 419 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D+ + G + + ++ A+ + L+ P++T + ASF G Sbjct: 420 GDYSTLASALSGVNGAAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVGE 479 Query: 292 QHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + T S + +V + G+ L P + + L+I+ EVS + A Sbjct: 480 EVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSNVLGANGAV 539 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+ + R+ +T+V + G +VL GL+ + + + +P L IP+LG LF+++ E Sbjct: 540 DV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVE 598 Query: 407 ETEIFIAATPFLVK 420 + + + P +++ Sbjct: 599 KKNLMVFIKPTIIR 612 >gi|148976513|ref|ZP_01813209.1| Type II secretory pathway, component EpsD [Vibrionales bacterium SWAT-3] gi|145964089|gb|EDK29346.1| Type II secretory pathway, component EpsD [Vibrionales bacterium SWAT-3] Length = 674 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 116/314 (36%), Gaps = 48/314 (15%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + + V + + + + ++ + V+ L+I QV ++ I E+ Sbjct: 301 SSSQRDKVVISAHSDTNSLVITAQPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDG 359 Query: 211 KQIGFQHS-------ITGSSSGPSKSFA-------------------------------- 231 +G Q I S++G S Sbjct: 360 VNLGVQWGNLETGAMIQYSNTGASIGGVMVGLEEAKDTETTTAVYDKNGKFLGNETTTEQ 419 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D+ + G + + ++ A+ + L+ P++T + ASF G Sbjct: 420 GDYSTLASALSGVNGAAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVGE 479 Query: 292 QHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + T S+ +V + G+ L P + + L+I+ EVS + A Sbjct: 480 EVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSNVLGANGAV 539 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+ + R+ +T+V + G +VL GL+ + + + +P L IP+LG LF+++ E Sbjct: 540 DV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVE 598 Query: 407 ETEIFIAATPFLVK 420 + + + P +++ Sbjct: 599 KKNLMVFIKPTIIR 612 >gi|227114133|ref|ZP_03827789.1| general secretion pathway protein D [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 684 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 69/367 (18%), Positives = 133/367 (36%), Gaps = 43/367 (11%) Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRV-----EMVSDTV-VLH 148 ANV+ ++ + + + + L R+ N +V +D V VL Sbjct: 253 TANVVADERTNSVLVRGEPNSRQRVIDMVKQLDRQQAVQGNTKVIYLKYAKATDLVEVLT 312 Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 G+ +IQ Q+ + +T ++V+ L+I QV Sbjct: 313 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 371 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240 ++ IAEV+ +G Q + + + + Sbjct: 372 VEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATTA 431 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296 GG + + ++ +L AL + + LA P++ + A+F G + + Sbjct: 432 LGGFNGIAAGFYQGNWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 491 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRV 353 T S +V G+ L P + + L I+ EVS + ++ Sbjct: 492 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGATFNT 551 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + + Sbjct: 552 RTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNLMLF 611 Query: 414 ATPFLVK 420 P +++ Sbjct: 612 IRPSIIR 618 >gi|329120652|ref|ZP_08249315.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC BAA-1200] gi|327460876|gb|EGF07210.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC BAA-1200] Length = 695 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 106/267 (39%), Gaps = 29/267 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------ 223 +K++ L++ QV ++ I E ++IG + GS+ Sbjct: 426 EKILEELDVPAR-QVMVETRIVEASDGFSREIGVKFGYAGSNGKNSWGSNWANAQANNNT 484 Query: 224 --------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + + + + + ++ L + L A + + ++ P Sbjct: 485 NVNASQNNTNRTWTLNPNINLPTTAATSSVALVHALSSGALALELSAQQAQNKAKVISSP 544 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + + A SG + Y+ SSS ++ + + + TP + G+I + I+ Sbjct: 545 RVLTQDRKEAVIESGTEVPYQEASSSGATST-SFKKAVLGMTVTPQITPDGQIIMDIKVN 603 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + V P ++ DT + +GGT++L G+ +++ + +PLL IP++G Sbjct: 604 K-DSVNRNCGASEPCIDTKRLDTKAMVENGGTLILGGIYEEENSEGVSKVPLLGDIPVVG 662 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPV 422 LF++ N + E+ I TP +V V Sbjct: 663 NLFKSRSRNTSKKELLIFITPRIVDNV 689 >gi|262170433|ref|ZP_06038111.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451] gi|261891509|gb|EEY37495.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451] Length = 567 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 115/309 (37%), Gaps = 28/309 (9%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + ++ + G V + + T + ++++ L+I + QV Sbjct: 259 KASDIAAMIGGEGNVNMLSERGTISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 317 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232 ++ I V+ L ++G + + ++ S Sbjct: 318 QIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVN 377 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + F V + + L AL+ + ++ P L + Q A G + Sbjct: 378 LASTSANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 437 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350 Y SS+GAT+V+ + L TP + R+ L + + G+ S Sbjct: 438 IPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 496 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ Sbjct: 497 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 556 Query: 411 FIAATPFLV 419 I TP +V Sbjct: 557 LIFVTPKVV 565 >gi|294142779|ref|YP_003558757.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12] gi|293329248|dbj|BAJ03979.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12] Length = 643 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 119/305 (39%), Gaps = 25/305 (8%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS-GRNQYANSSSKKVMNLLNIAGEDQV 196 + +L G ++ S+ + + E + + + +++ +L+I QV Sbjct: 337 AKAADIAELLKGEDSSLLTSRGSATVDERTNTLLVKDTEDTLENIHRLIEVLDIPIR-QV 395 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------------------FAADFGG 236 ++ + V+ ++ + +G Q IT S Sbjct: 396 LIEARMVTVKDNVSEDLGIQWGITDQQGTRGTSGSIEGAESIAGGLIPALADRLNVALPA 455 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + F V + D + L ALE+ +A P + S Q A++ G + Sbjct: 456 PAGAASIAFHVARLADGTILDMELSALEQENKGEIIASPRIMT-SNQKAAYIEQGVQIPY 514 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVR 354 SSS+GA +V+ + L TP + R+ L ++ V+ G+ S + Sbjct: 515 VESSSSGAATVSFKKAVLSLRVTPQITPDNRVILDLEITQDSQGEVVATPLGEAVSIDTQ 574 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + T V + G TIVL G+ + ++ +P+L IP LG LFR++ E E+ I Sbjct: 575 RIGTQVLVNHGETIVLGGIYQQNLISRVSKVPILGDIPFLGFLFRSTSDKNERQELLIFV 634 Query: 415 TPFLV 419 TP ++ Sbjct: 635 TPKII 639 >gi|332535166|ref|ZP_08410973.1| type II secretion outer membrane pore forming protein PulD [Pseudoalteromonas haloplanktis ANT/505] gi|332035385|gb|EGI71885.1| type II secretion outer membrane pore forming protein PulD [Pseudoalteromonas haloplanktis ANT/505] Length = 687 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 60/293 (20%), Positives = 100/293 (34%), Gaps = 47/293 (16%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S + V+ L+I QV ++ I EV +G Q + Sbjct: 331 TAQPDTMRSLESVIERLDIR-RAQVLVEAIIIEVMEGDGVNLGLQWISEQGGMLQFNNGT 389 Query: 232 ADFGGKFVSEG---------------------------------------GDFSVKGVLD 252 G G + + Sbjct: 390 TVPVGSLAVAAEQAQDVTVTKNIIGTESGTVTPYTETTEGDYGPLASLLSGINGLALGVV 449 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSV 307 + + ++ A+ T LA P++T + + AS G + T S + +V Sbjct: 450 KNDWGAIIQAVATDTNSNILATPSITTMDNEEASILVGQEVPIITGSQTGSNNANPFQTV 509 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + G+ L TP + + L I+ EVS S R TTV GG Sbjct: 510 ERQEVGIKLIVTPQINDGSAVQLTIEQEVSSVSGATAVD--ISVNKRAIKTTVMADDGGM 567 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +VL GL+ +D+Q+ +PLL IPILG LFR++ R + + + P +++ Sbjct: 568 VVLGGLIDEDVQESVSKVPLLGDIPILGHLFRSTNTTRRKRNLIVFIRPTIIR 620 >gi|260718933|ref|YP_003225074.1| type II secretion protein EtpD [Escherichia coli O103:H2 str. 12009] gi|257762444|dbj|BAI33940.1| type II secretion protein EtpD [Escherichia coli O103:H2 str. 12009] Length = 656 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 115/308 (37%), Gaps = 34/308 (11%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192 VL G+ I++ + +E + +++ + V++ L+I Sbjct: 285 VLTGISSNIENDAKKSSSTEALRKGVTIKSHEQTNALILTGAPDVIRDLENVISQLDIRR 344 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------------KFV 239 QV ++ IAEV+ +G Q S S + Sbjct: 345 P-QVLVEAIIAEVQDADGLNLGIQWVNKHSGVTQFTSTGLPITTMVQTRQSDISDSDQSN 403 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + + + ++ +L AL ++ LA P++ + A+F G + + S Sbjct: 404 TLSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGS 463 Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYR 352 +T +V G+ L P + + L I+ EVS + + ++ Sbjct: 464 QTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFN 523 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + + +G T+V+ GLL I+ + +PLL IP+LG LF + + + + + Sbjct: 524 TRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLML 583 Query: 413 AATPFLVK 420 P +++ Sbjct: 584 FIRPTIIR 591 >gi|34979599|gb|AAQ83844.1| type IV pilus biogenesis secretin PilQ precursor [Legionella pneumophila 130b] gi|307609724|emb|CBW99235.1| type IV pilus [Legionella pneumophila 130b] Length = 698 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 117/312 (37%), Gaps = 30/312 (9%) Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAG 192 I +D VL + S R + + + +++ L+I Sbjct: 372 QINYAKAADIAVLIKDKQNSLLSDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPV 431 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------- 233 + QV ++ I EV +D + IG + ++ + A+ Sbjct: 432 K-QVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLN 490 Query: 234 ------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 ++ + D + L ALE ++ P L + Q A+ Sbjct: 491 LDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAV 549 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G+ + ++S+GAT+V + L TP + G+I + +Q P Sbjct: 550 IESGEEIPYQEATSSGATAVAFKKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLG 608 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P+ ++ T V + +G TIVL G+ K D ++ IP ++P++G LF N + + Sbjct: 609 VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKN 668 Query: 408 TEIFIAATPFLV 419 E+ I TP ++ Sbjct: 669 EELLIFITPRII 680 >gi|262373971|ref|ZP_06067248.1| general secretion pathway protein D [Acinetobacter junii SH205] gi|262310982|gb|EEY92069.1| general secretion pathway protein D [Acinetobacter junii SH205] Length = 751 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 30/267 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L+I QV ++ I EV D Q+G Q ++ SSG + G Sbjct: 379 EAAIQQLDIR-RQQVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLINFTNVGSSLSKL 437 Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278 + G S + ++ AL+ T L+ P++ Sbjct: 438 AAGYLTGGAAGLGSAIGAGSSIVVGDYKEGANGSRKLYGALIQALKSNTKSNLLSTPSIV 497 Query: 279 AISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + A G + T S + T+V D GV L P + G + L + Sbjct: 498 TMDNEEAYIVVGQNVPFVTGSVTTNSTGVNPYTTVERKDVGVTLKVVPHIGEGGSVRLEV 557 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EVS R T+V G T+VL GL+ D+ ++G+P+L IP Sbjct: 558 EQEVSAVQESRGQATDLVTSKRAIKTSVLADHGQTVVLGGLISDNSIHSRQGLPVLGDIP 617 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 LG LFR E+ + + P +V Sbjct: 618 YLGRLFRADSKTNEKRNLLVFIHPTIV 644 >gi|54296952|ref|YP_123321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila str. Paris] gi|53750737|emb|CAH12144.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila str. Paris] Length = 698 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 117/312 (37%), Gaps = 30/312 (9%) Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAG 192 I +D VL + S R + + + +++ L+I Sbjct: 372 QINYAKAADIAVLIKDKQNSLLSDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPV 431 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------- 233 + QV ++ I EV +D + IG + ++ + A+ Sbjct: 432 K-QVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLN 490 Query: 234 ------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 ++ + D + L ALE ++ P L + Q A+ Sbjct: 491 LDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAV 549 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G+ + ++S+GAT+V + L TP + G+I + +Q P Sbjct: 550 IESGEEIPYQEATSSGATAVAFKKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLG 608 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P+ ++ T V + +G TIVL G+ K D ++ IP ++P++G LF N + + Sbjct: 609 VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKN 668 Query: 408 TEIFIAATPFLV 419 E+ I TP ++ Sbjct: 669 EELLIFITPRII 680 >gi|261823291|ref|YP_003261397.1| outer membrane porin HofQ [Pectobacterium wasabiae WPP163] gi|261607304|gb|ACX89790.1| type IV pilus secretin PilQ [Pectobacterium wasabiae WPP163] Length = 424 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 74/439 (16%), Positives = 162/439 (36%), Gaps = 39/439 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNP--SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI 58 M +S L + P A+ + I + +++++ + + Sbjct: 1 MNIRMLCRVATLSWLLLLTVPYQVGAEPSVSMAFENSPIPQVLQALADHQQLNVVIAPGV 60 Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 + + + +V + +G+ +V +G +L Sbjct: 61 TGNLSLRLAEV-------------PWQQALDIVLRMGKLSV---ERNGNVLLVFPAEHLA 104 Query: 119 DIAHLEMT----LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-- 172 + L + + N+ V + VV + ++Q + A+ + ++ Sbjct: 105 SQQKEKDERMVELAQKLPLHNLSVALQYADVV--DVAASVQAQRGALLSTRGSVTVDKRT 162 Query: 173 ------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 + A + + + L++ QV L I + + L+ +G + ++ Sbjct: 163 NTLLIRDTEDALAQLEPWLKELDLPL-AQVQLAAHIVTISSEHLQALGVNWGLGEGNAAN 221 Query: 227 SKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 +F + + L+ + L ALE+ + + +A P L Q Sbjct: 222 KALRLNNFNVGLPVDTPAVNAGFHLARLNGRLLDLELMALEQESQVEIIASPRLFTAHQQ 281 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +AS G + Y+ S ++G+TS+ + + + TP +L GRI L ++ + P + Sbjct: 282 TASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPDILRAGRITLNLKISQNMPGQTI 341 Query: 344 ---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G+ + ++ T V + G TIVL G+ + + +P+L ++P+ G LFRN Sbjct: 342 KQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQQKKNSGSQVPILGEVPVFGHLFRN 401 Query: 401 SRFNREETEIFIAATPFLV 419 E+ I TP L+ Sbjct: 402 HTQQHTRRELVIFITPTLI 420 >gi|149911345|ref|ZP_01899965.1| putative type II secretory pathway, component EpsD [Moritella sp. PE36] gi|149805585|gb|EDM65588.1| putative type II secretory pathway, component EpsD [Moritella sp. PE36] Length = 699 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 107/293 (36%), Gaps = 47/293 (16%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSK 228 + ++V+N L+I QV ++ I E+ G Q + ++ Sbjct: 325 TAQPDVMRTLQQVINQLDIR-RAQVLVEAIIVEISEGDGINFGVQWLSEAGGTQYNNGTQ 383 Query: 229 SFAADFGGKF------------------------------------VSEGGDFSVKGVLD 252 G +S ++ + Sbjct: 384 VPLTTIGAGIYDAQDTTTTTTGTDAQGNPTSTTSTTTGDISTLAAALSGVNGLALGVMNS 443 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSV 307 SF ++ A + LA P++ + Q ASF G + T SS +V Sbjct: 444 AKSFGAIIQASANDSNSNILATPSIMTLDNQEASFIVGEEVPVITGSSASSGNDNPFQTV 503 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + G+ L TP + + L I+ EVS+ + + ++ R+ +TT+ SG T Sbjct: 504 ERREVGIKLTVTPQINEGDAVQLTIEQEVSQVLGSTSVD--VTFAKRQVNTTILADSGQT 561 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +V+ GLL + + + +P L IP +G LF+++ + ++ + I +++ Sbjct: 562 VVIGGLLDEQVIESVSKVPWLGDIPWIGNLFKSTSSSTKKRNLMIFIKATIIR 614 >gi|330966297|gb|EGH66557.1| general secretion pathway protein D [Pseudomonas syringae pv. actinidiae str. M302091] Length = 775 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 59/261 (22%), Positives = 96/261 (36%), Gaps = 19/261 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244 QV ++ I EV +G Q S T + + G + Sbjct: 501 PLQVQIETRILEVSLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 560 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + + L ALE + L+ P+L ++ Q A G S +T Sbjct: 561 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 620 Query: 305 TS------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRK 355 ++ V GV+L P + G + + IQ +VS N P R Sbjct: 621 STNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRS 680 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V SG T++L GL+K D + +P L +IP L LF N+ ++ TE+ + T Sbjct: 681 VSTQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLIT 740 Query: 416 PFLVKPVAMRDLSRPDDHYSV 436 P ++ + + D Y Sbjct: 741 PRVI--TSSSQARQVTDDYRQ 759 >gi|294341497|emb|CAZ89914.1| putative general secretion pathway protein [Thiomonas sp. 3As] Length = 884 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 114/326 (34%), Gaps = 43/326 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKSF 230 +V+ L++ QV ++ IAEV + Q+G Q GS+ G S Sbjct: 426 RVIERLDVR-RAQVYVEALIAEVDANKAAQLGIQWQAIAGSAGNQNAIIGGSNYGTGGSN 484 Query: 231 AADFGGKFVSEGGDFSVKGVLDRF------------------SFETVLHALERATAIRTL 272 + G + + + + L+ L Sbjct: 485 IINLQAAISGGGSSAATALASGSLAIPNGLNIGILHNVAGMATLGLLANFLQTQDGANIL 544 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLS 324 + P L + + A G + T + T ++ D G+ L P + + Sbjct: 545 SAPNLMTLDNEEAKIVVGQNVPFVTGQYAQTGSSATVTPFQTIERKDVGLTLKVRPQITA 604 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G I + + EVS NA + R T V + G TIVL GL++D++ Q Sbjct: 605 GGAIKMDVYQEVSSISSTTNAAGI-ITNKRSIQTAVLVNDGQTIVLGGLMQDNVSQNNSK 663 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP L IP LGALFR++ ++T++ + P +V+ D + Sbjct: 664 IPGLGDIPGLGALFRSNSRTAQKTDLMVFLRPIVVR---TEDQGNALSQQRYDTMRGMQD 720 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIG 470 ++ +G E + +G G Sbjct: 721 RAQLPAQFGMPEMPGPVLPSLQGDTG 746 >gi|153825107|ref|ZP_01977774.1| fimbrial assembly protein [Vibrio cholerae MZO-2] gi|149741253|gb|EDM55295.1| fimbrial assembly protein [Vibrio cholerae MZO-2] Length = 578 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86 + I ++ ++ ++ + V Q VL V R Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 + G + +I + + R L I + + ++ + Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + T + +++ L+I + QV ++ I V+ Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIHEIIESLDIPVK-QVQIEARIVTVK 338 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242 L+++G + + ++ S + + Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 398 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F V + + L AL+ + ++ P L + Q A G + Y SS+ Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360 GA++V + L TP + R+ L + + G+ S ++ T V Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576 >gi|26991756|ref|NP_747181.1| type IV pilus secretin PilQ [Pseudomonas putida KT2440] gi|24986864|gb|AAN70645.1|AE016708_6 type IV pili biogenesis protein PilQ [Pseudomonas putida KT2440] Length = 420 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 70/418 (16%), Positives = 151/418 (36%), Gaps = 13/418 (3%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +++ T++SI L S+ P + P + + +++ + + V Sbjct: 4 WMKYLLATLLSIPLASATPYQGE-PLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSV 62 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 + +QD V D+V+ S L + G ++ + + + AH Sbjct: 63 TLRLQD--VPWDQALDLVLRSKG---LSRRQEGNVLLVAPAAEFAAQSADARVSQALDAH 117 Query: 123 LEMTLRRFIA--DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L+ R + + L G E + T + ++ A Sbjct: 118 LQPLRRELLPIHHAKAADLAQLLLAGLEGDGIPPASLS-VDERTNTLVVHLPADRLAEMR 176 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 +++ L++ QV ++ I E D K +G + Sbjct: 177 --QLVAQLDVPVR-QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGLER 233 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + + + L A+E++ +++P + ++A G + Y+ S Sbjct: 234 AGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQ 293 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 S GATSV+ + + L TP + ++ + ++ EP ++P R + + V Sbjct: 294 S-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNAKV 352 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + G TIV+ G+ + + +P +P +G LFR +++E+ + TP + Sbjct: 353 RVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 410 >gi|292493619|ref|YP_003529058.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4] gi|291582214|gb|ADE16671.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4] Length = 767 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 133/338 (39%), Gaps = 24/338 (7%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDI 209 ++ V + + + + K+++ L QV ++ TIAEV+ Sbjct: 429 ADDDADEKEVRIIADVENNALLISATSRDYDKILSALRQLDIPPRQVLVEATIAEVQLTD 488 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETV 259 Q G Q + + A +F G G + D + Sbjct: 489 NLQYGLQWFFRNEVGEFTGTGAVNFSTDVGDNGFLQGVEGLLGGGGFTYALTDDSIVRAL 548 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDY 312 L L + + L+ P L A+ Q+A+ G Q T +T + V D Sbjct: 549 LRTLASDSKLNVLSSPQLLALDNQTAAIRVGDQVPILTGQTAGLAGTGNTLTSQVQFRDT 608 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 GV+L TP V + GR+ L I+ EV++ PV + ++ R ++ V + SG TIV Sbjct: 609 GVLLTVTPRVNAGGRVTLEIRQEVTDVGDPVTVGSDIQNFTFLQRTFESVVTVQSGETIV 668 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GL++D G+P L K+P +G LF ++ +++ TE+ + TP +V+ + Sbjct: 669 LGGLIRDRDSFTDSGVPFLYKLPFIGPLFGSTTRDKQRTELIVLMTPRVVR--DQHEARL 726 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 + + + + + I K E + KG Sbjct: 727 VTEEFRQKLRNASDVAEEMGGIAPQKVNEEEISPSTKG 764 >gi|258620495|ref|ZP_05715533.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573] gi|258587374|gb|EEW12085.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573] Length = 572 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 115/309 (37%), Gaps = 28/309 (9%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + ++ + G V + D T + ++++ L+I + QV Sbjct: 264 KASDIAAMIGGEGNVNMLSDRGTISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 322 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232 ++ I V+ L ++G + + ++ S Sbjct: 323 QIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVN 382 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + F V + + L AL+ + ++ P L + Q A G + Sbjct: 383 LASTSANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 442 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350 Y SS+GAT+V+ + L TP + R+ L + + G+ S Sbjct: 443 IPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 501 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ Sbjct: 502 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 561 Query: 411 FIAATPFLV 419 I TP +V Sbjct: 562 LIFVTPKVV 570 >gi|158520346|ref|YP_001528216.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3] gi|158509172|gb|ABW66139.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3] Length = 987 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 103/247 (41%), Gaps = 23/247 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-------------------D 233 QV +K I E ++ G + I + P+ + Sbjct: 743 TPQVMIKARIVETSSSFSREFGTEWGIDNRYNSPNINIGTDGAYRDEMGGTYTYDVALNS 802 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + G + + FS + L +E ++ ++ P + + ++A+ + G + Sbjct: 803 LSSPVQNLIGINFARIIGTPFSLDAKLSLMESTGDVKIISTPKVVTLDNKTATISQGIDY 862 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 Y V G V + L TP V RI +++ + ++ +N S+ Sbjct: 863 PYTVV--EDGEADVKWKTIDLNLDVTPHVTPDDRISMKLNIQKNDVGEIINGEQ--SFNT 918 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 ++A T + + G T+V+ G++K+ + G+P +SKIP+LG LF+ + E++E+ I Sbjct: 919 KRASTELLVNDGDTVVIGGIIKEREGAGERGVPWISKIPVLGNLFKYKTRSDEKSELLIF 978 Query: 414 ATPFLVK 420 TP +V+ Sbjct: 979 ITPNVVR 985 >gi|254228550|ref|ZP_04921975.1| general secretion pathway protein D [Vibrio sp. Ex25] gi|262392666|ref|YP_003284520.1| general secretion pathway protein D/type II secretion outermembrane pore forming protein (PulD) [Vibrio sp. Ex25] gi|151938932|gb|EDN57765.1| general secretion pathway protein D [Vibrio sp. Ex25] gi|262336260|gb|ACY50055.1| general secretion pathway protein D/type II secretion outermembrane pore forming protein (PulD) [Vibrio sp. Ex25] Length = 672 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 67/383 (17%), Positives = 137/383 (35%), Gaps = 62/383 (16%) Query: 96 QANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 + N ILI D K L ++ + D+ R + N + E + D VL G+ + Sbjct: 232 RTNAILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKNAKAEDLVD--VLKGVSDNL 289 Query: 155 QDSQRAVELSETFLSQS--------------GRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 Q ++ + + ++ + V+ L+I QV ++ Sbjct: 290 QAEKQVGQKASGAQRGEVVIAAHAATNALVLTAPPDIMNALQDVIAQLDIR-RAQVLIEA 348 Query: 201 TIAEVRRDILKQIGFQHS--------------------------------------ITGS 222 I E+ +G Q G Sbjct: 349 LIVEMSEGDGINLGVQWGSLETGAVIQYGNSGAPIGQVMVGLEEAKDQTRTEYYTNANGE 408 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + + + D+ + G + + ++ A+ + L+ P++T + Sbjct: 409 RTPYDVTESGDYSTLASALSGVNGAAMSIVMGDWTALVSAVATDSNSNILSSPSITVMDN 468 Query: 283 QSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 ASF G + T ++ +V + G+ L P + + L I+ EVS Sbjct: 469 GEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVS 528 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG L Sbjct: 529 NVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHL 587 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F+++ E+ + + P +++ Sbjct: 588 FKSTSTQTEKRNLMVFIKPTIIR 610 >gi|156972923|ref|YP_001443830.1| general secretion pathway protein D [Vibrio harveyi ATCC BAA-1116] gi|156524517|gb|ABU69603.1| hypothetical protein VIBHAR_00601 [Vibrio harveyi ATCC BAA-1116] Length = 658 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 66/458 (14%), Positives = 154/458 (33%), Gaps = 88/458 (19%) Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98 I + + ++ ++ ++ V + ++ S M + + Sbjct: 139 NIILITGRAAVVNRLAEIIKRVDQAGDKEIEVVELRNASASEMVRIVDALNKTTNQKSTP 198 Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145 ++ +++ D + + L L +A ++ D V Sbjct: 199 EFLEPKIVADDRTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 258 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190 VL G+ +Q ++A + + + A+ ++ V++ L+I Sbjct: 259 VLKGVSDNLQAEKQAGQNGASSAQRGEVVIAAHEATNSLVLTAQPDIMMALQDVISQLDI 318 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADF------------ 234 QV ++ I E+ +G Q + G + + + Sbjct: 319 R-RAQVLIEALIVEMSEGDGINLGVQWGNLDTGAVIQYGNTGAQIGNVMVGLEEAKDTTK 377 Query: 235 ---------------------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + GG + + ++ A+ + Sbjct: 378 TESYWDEDANGGSGDWNTREYIEEGDYSTLAAALGGVNGAAMSIMMGDWTALITAVSSDS 437 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTV 322 L+ P++T + ASF G + T ++ +V + G+ L P + Sbjct: 438 NSNILSSPSITVMDNGEASFIVGEEVPVITGSTSGSNNDNPFQTVDRKEVGIKLKVVPQI 497 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + Sbjct: 498 NEGDSVQLTIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESE 556 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +PLL IP++G LF+++ E+ + + P +++ Sbjct: 557 SKVPLLGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIR 594 >gi|145298443|ref|YP_001141284.1| S-protein secretion component D [Aeromonas salmonicida subsp. salmonicida A449] gi|142851215|gb|ABO89536.1| S-protein secretion component D [Aeromonas salmonicida subsp. salmonicida A449] Length = 719 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 69/309 (22%), Positives = 115/309 (37%), Gaps = 23/309 (7%) Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVT 197 + V+T+ + + ++++ LL QV Sbjct: 407 NSGRAIPKSNNVQTMSVMTDQYRVVVDAKRNAIIFSGRYGDYQRLIELLQFVDQRPRQVL 466 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 L+ IAEV+ +GF+ +K + + G+ ++ GV Sbjct: 467 LQAVIAEVKLTNDSSLGFEW-------NVNKGDITGGTSGLIQQTGNLNLAGVFG--DVT 517 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------ATSVTT 309 A + L+ P L + ++AS G Q + KT S G TS Sbjct: 518 AKFAAALSEGNAKVLSSPRLVVLDQETASIKIGDQIVVKTGEISNGSSGNDPQVTTSYKY 577 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D G+ L TP++ G I + I E+S G GD P R + + SG T+ Sbjct: 578 IDTGLSLEITPSINDDGLIEMVISQEISSVSAG--GGDTPPINRRAVQSKLLADSGKTVY 635 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GLL +E +PLL IP+LG LF+ E+TE+ + TP+++ + + Sbjct: 636 LGGLLSQSNTNNEEKVPLLGDIPLLGNLFKYQTKKIEKTELVLLITPYVI--TSKEEAEF 693 Query: 430 PDDHYSVED 438 D + Sbjct: 694 YTDQFRTLS 702 >gi|300114921|ref|YP_003761496.1| general secretion pathway protein D [Nitrosococcus watsonii C-113] gi|299540858|gb|ADJ29175.1| general secretion pathway protein D [Nitrosococcus watsonii C-113] Length = 833 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 113/289 (39%), Gaps = 20/289 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------DFGGKFVSEGGDFS 246 QV ++ TIAEV Q G Q T + + GG G Sbjct: 539 PRQVLVEATIAEVALTGSLQYGLQWYFTNDLASGQGAGGQGALPALGEGGLQALMAGGGF 598 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 D +L L + L+ P L A+ Q+A G Q + ++ + Sbjct: 599 TYAFADGGVVRALLRLLASENKVEILSSPQLLALDNQTAEIRVGDQVPIQQGQTTGIGGT 658 Query: 307 VT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG------VNAGDMPSYRVRKAD 357 D GV+L TP V + GR+ + + EV++ G P++ R Sbjct: 659 TQQIRYRDTGVLLTVTPRVNAGGRVTMELTQEVTDVGGTSLPGGATTVGGNPTFLQRNFQ 718 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + V + SG TIVL GL++++ + G+P L K+P++G LF + +R+ TE+ + TP Sbjct: 719 SVVTVQSGETIVLGGLIRNNDAFNQSGVPFLYKLPLIGPLFGTTTRSRQRTELVVLMTPR 778 Query: 418 LVKPVAMRDLSRPD--DHYSVEDDAKAFFFN---RVNKIYGPKEASEVE 461 +V+ L + + D ++ K G K + + Sbjct: 779 VVRDQYEARLVTEELREKLKNASDVAEKTGGITFKIEKENGEKPSPSTD 827 >gi|56461571|ref|YP_156852.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis L2TR] gi|56180581|gb|AAV83303.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis L2TR] Length = 427 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 55/328 (16%), Positives = 125/328 (38%), Gaps = 37/328 (11%) Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFI--ADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 +L+++ D+A L ++ + + V+ ++T++L T + Sbjct: 123 NEYHSILLSVNFAKASDLAKLLKNEQQSFLSPNGAVSVDARTNTLILR---DTPEQLATI 179 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 +L +N L++ + QV ++ + V+ ++ K++G + ++ Sbjct: 180 RQL---------------------VNDLDVPVK-QVLIEARMVTVKANVSKELGIRWGVS 217 Query: 221 GSSSGPSKSFAA-------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 + + D + ++ + D + L ALE+ + Sbjct: 218 EYGLAIPEDAGSFVKGMQVDLPTAAPAGTFSANLARLSDDILLDLELTALEQENKAEIIT 277 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 P + + Q A G + Y ++ GAT+V + L TP + + + + Sbjct: 278 SPKIFTSNQQPAYIEQGTEIPYVET-AAHGATAVQFKKAVMGLSVTPQITPNNHVLMELT 336 Query: 334 TEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + V P+ ++ T V +G TIVL G+ ++ +P+L + Sbjct: 337 ITQNTRGDTVATPTGPAVAIDTQEMSTRVLAKNGETIVLGGIFQEHNLNDDSRVPILGSL 396 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P++G LF + + E+ E+ I TP ++ Sbjct: 397 PLIGKLFSHQQQRDEKRELMIFVTPTIL 424 >gi|90580860|ref|ZP_01236662.1| putative fimbrial assembly protein [Vibrio angustum S14] gi|90437931|gb|EAS63120.1| putative fimbrial assembly protein [Vibrio angustum S14] Length = 574 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 73/416 (17%), Positives = 144/416 (34%), Gaps = 39/416 (9%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 + I ++ ++ + V + + D V P D+++ S Sbjct: 168 FQDIPVRNVLQLIADYNDFNLVVSDSVSGNVTLRLDD--VPWPQVLDIILQSKD----LD 221 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM- 150 K V + +++ ++ + ++LR + N + +L G Sbjct: 222 KRVRGSVLLVAPKAELTASEHQVMEAKRKQQELLSLRSDLIQVN-YAKATDIAALLSGST 280 Query: 151 --VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 V + + T S K +++ L+I + QV ++ I + Sbjct: 281 DGVGMLSERGSLHVDERTNALIIKDTPDNIRSIKDIVSSLDIPVK-QVQIEARIVTINEG 339 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------------------GDF 245 + ++G + + S + G S G Sbjct: 340 DIDELGVRWGV--SKVNGDTTVGGSIEGNLASSGLLGEDATVDDFLNVNLGAGAGAASIA 397 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 L + L AL+ ++ P L + ++A G + Y SS+GAT Sbjct: 398 FQVAKLGNILLDLELSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEA-SSSGAT 456 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELP 363 SV+ + L TP + ++ L ++ + G S ++ T V + Sbjct: 457 SVSFKKAVLSLMVTPQITPDDKLVLDLEVTQDNKGEDVPTGTGTAISIDTQRIGTQVLVN 516 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G T+VL G+ + + + +PLL IP+LGALFR+ + E+ I TP +V Sbjct: 517 NGETVVLGGIYQHSMTNVTRKVPLLGDIPVLGALFRHKMEQMGKRELLIFVTPKIV 572 >gi|194365988|ref|YP_002028598.1| general secretion pathway protein D [Stenotrophomonas maltophilia R551-3] gi|194348792|gb|ACF51915.1| general secretion pathway protein D [Stenotrophomonas maltophilia R551-3] Length = 793 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 65/276 (23%), Positives = 114/276 (41%), Gaps = 30/276 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V++ L+ QV ++ I EV + ++G Q + + F GG ++ Sbjct: 381 RVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTNGGSGLNTA 439 Query: 243 -------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G ++ GV + + + +AL+ L+ P L + + Sbjct: 440 ARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSKGGANILSTPNLMTLDNE 499 Query: 284 SASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +AS G + + S+ ++ D G+ L P + G + L I E Sbjct: 500 AASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQE 559 Query: 336 VSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VS + R DT+V L G +VL GLL+D + ++ +P L KIP+L Sbjct: 560 VSSIDAQSANSTVGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVL 619 Query: 395 GALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429 GALFR+ R +T + + P +V+ P A + L+R Sbjct: 620 GALFRSDTRKRAKTNLMVFLRPHVVRDPAAGQRLTR 655 >gi|299771842|ref|YP_003733868.1| general secretion pathway protein D [Acinetobacter sp. DR1] gi|298701930|gb|ADI92495.1| general secretion pathway protein D [Acinetobacter sp. DR1] Length = 757 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 103/269 (38%), Gaps = 32/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 381 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 439 Query: 242 GGDF------------------SVKGVLDRFSF-------ETVLHALERATAIRTLAEPT 276 + L +F ++ AL+ T L+ P+ Sbjct: 440 AAGYLSGGSAGAASAIAGGANKGNGATLALGNFENSRKAYGALIQALKSNTKSNLLSTPS 499 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S + T+V D GV L P + G + L Sbjct: 500 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 559 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD++ ++GIP LS Sbjct: 560 EVEQEVSNVQTSKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVELSRQGIPGLSS 619 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP +G LFR+ + + + + P +V Sbjct: 620 IPYVGRLFRSDSRSNTKRNLLVFIHPTIV 648 >gi|157372838|ref|YP_001480827.1| putative outer membrane porin HofQ [Serratia proteamaculans 568] gi|157324602|gb|ABV43699.1| type IV pilus secretin PilQ [Serratia proteamaculans 568] Length = 413 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 68/297 (22%), Positives = 121/297 (40%), Gaps = 25/297 (8%) Query: 150 MVRTIQDSQRAVELSETFLSQSGR--NQYANSSSKKVMNLLNIAGED------------- 194 V A E++E +Q G ++ + + K N + I Sbjct: 117 SVTLPLSHADAEEVAENLNAQGGILLSERGSVVADKRTNAVLIRDTASIVALLTQRIGEM 176 Query: 195 -----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFS 246 QV L I + + L+++G + + S F S Sbjct: 177 DAPLAQVQLATHIVTINSESLRELGVRWGLAPDDRPASSWQMDGFNVGLPLERSAVSAGF 236 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + L ALE+ + +A P L + Q+AS G + Y+ S S+GATS Sbjct: 237 HLARIGGRLLDLELMALEQENRVEIIASPRLLTANLQTASIKQGTEIPYEVNSGSSGATS 296 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPS 364 + + + + TP +L GRI L +Q + P ++ AG+ + ++ T V + Sbjct: 297 MEFKEAVLGMEVTPKILPNGRITLTLQISQNMPGRSISRAAGETLAIDKQEIKTQVTVKD 356 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G T+VL G+ + + + +P +S +P+LG+LF+ S + E+ I TP L+K Sbjct: 357 GETVVLGGVFQRHSAEGADKVPGISDVPLLGSLFKQSSKQHKRRELVIFITPTLIKA 413 >gi|17547833|ref|NP_521235.1| general secretion pathway protein D [Ralstonia solanacearum GMI1000] gi|17430138|emb|CAD16823.1| probable general secretory pathway d transmembrane protein [Ralstonia solanacearum GMI1000] Length = 805 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 110/294 (37%), Gaps = 44/294 (14%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235 A QV ++ I EV D Q+G Q + +FG Sbjct: 429 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVIAAT 488 Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G VS + +L AL ++ L+ P Sbjct: 489 VGSGGIGSTAAQTALGSITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 548 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G T S + T + D G+ L P + G + Sbjct: 549 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGMV 608 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P Sbjct: 609 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVIANDGQVIVLGGLLEDNYQDSEQKVPG 668 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 L IP+LGALFR+ R++T + + P++++ A + D+ Y+ DA+ Sbjct: 669 LGDIPVLGALFRSESKTRKKTNLLVFLRPYILR-TAEATGALSDNRYNYMRDAQ 721 >gi|17547690|ref|NP_521092.1| fimbrial type-4 assembly signal peptide protein [Ralstonia solanacearum GMI1000] gi|17429995|emb|CAD16680.1| probable fimbrial type-4 assembly signal peptide protein [Ralstonia solanacearum GMI1000] Length = 714 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231 QV ++ I E + +G + ++G Sbjct: 462 RQVMIEARIVEADDTFSRNLGAKLGFAAKTNGAGYGNTYSNVVSPVTKDATWDNSAAVSL 521 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 522 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 581 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV+ + L TP + G + L +V++ +G + + Sbjct: 582 TEVPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNVFLD--VDVNKDSLGTQTTNGFA 638 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+ Sbjct: 639 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 698 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 699 LVFLTPRVL 707 >gi|15642625|ref|NP_232258.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587503|ref|ZP_01677270.1| fimbrial assembly protein [Vibrio cholerae 2740-80] gi|121727577|ref|ZP_01680685.1| fimbrial assembly protein [Vibrio cholerae V52] gi|147673064|ref|YP_001218123.1| fimbrial assembly protein [Vibrio cholerae O395] gi|153217486|ref|ZP_01951197.1| fimbrial assembly protein [Vibrio cholerae 1587] gi|153820291|ref|ZP_01972958.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457] gi|153821537|ref|ZP_01974204.1| fimbrial assembly protein [Vibrio cholerae B33] gi|153830200|ref|ZP_01982867.1| fimbrial assembly protein [Vibrio cholerae 623-39] gi|227082746|ref|YP_002811297.1| fimbrial assembly protein [Vibrio cholerae M66-2] gi|254851169|ref|ZP_05240519.1| fimbrial assembly protein [Vibrio cholerae MO10] gi|298500547|ref|ZP_07010351.1| fimbrial assembly protein [Vibrio cholerae MAK 757] gi|9657220|gb|AAF95771.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548234|gb|EAX58302.1| fimbrial assembly protein [Vibrio cholerae 2740-80] gi|121630068|gb|EAX62473.1| fimbrial assembly protein [Vibrio cholerae V52] gi|124113543|gb|EAY32363.1| fimbrial assembly protein [Vibrio cholerae 1587] gi|126509166|gb|EAZ71760.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457] gi|126520922|gb|EAZ78145.1| fimbrial assembly protein [Vibrio cholerae B33] gi|146314947|gb|ABQ19486.1| fimbrial assembly protein [Vibrio cholerae O395] gi|148874303|gb|EDL72438.1| fimbrial assembly protein [Vibrio cholerae 623-39] gi|227010634|gb|ACP06846.1| fimbrial assembly protein [Vibrio cholerae M66-2] gi|227014518|gb|ACP10728.1| fimbrial assembly protein [Vibrio cholerae O395] gi|254846874|gb|EET25288.1| fimbrial assembly protein [Vibrio cholerae MO10] gi|297540716|gb|EFH76773.1| fimbrial assembly protein [Vibrio cholerae MAK 757] Length = 578 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 70/419 (16%), Positives = 142/419 (33%), Gaps = 43/419 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86 + I ++ ++ ++ + V Q VL V R Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 + G + +I + + R L I + + ++ + Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + T + ++++ L+I + QV ++ I V+ Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 338 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242 L+++G + + ++ S + + Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 398 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F V + + L AL+ + ++ P L + Q A G + Y SS+ Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360 GA++V + L TP + R+ L + + G+ S ++ T V Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576 >gi|254225379|ref|ZP_04918990.1| fimbrial assembly protein [Vibrio cholerae V51] gi|125622013|gb|EAZ50336.1| fimbrial assembly protein [Vibrio cholerae V51] Length = 578 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 70/419 (16%), Positives = 142/419 (33%), Gaps = 43/419 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86 + I ++ ++ ++ + V Q VL V R Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 + G + +I + + R L I + + ++ + Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + T + ++++ L+I + QV ++ I V+ Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 338 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242 L+++G + + ++ S + + Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 398 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F V + + L AL+ + ++ P L + Q A G + Y SS+ Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360 GA++V + L TP + R+ L + + G+ S ++ T V Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576 >gi|104779612|ref|YP_606110.1| type IV pili biogenesis protein PilQ [Pseudomonas entomophila L48] gi|95108599|emb|CAK13293.1| putative type IV pili biogenesis protein PilQ [Pseudomonas entomophila L48] Length = 412 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 66/416 (15%), Positives = 149/416 (35%), Gaps = 22/416 (5%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 M+S + P + + I++ + + ++ + +++ Sbjct: 1 MLSGVRAALAAEFQGEPMSLNFQDVEVRGVLQVMADYAGINLVASDAVQGRITLRLEE-- 58 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V D+V+ S L + G +I + + L + A LE R Sbjct: 59 VPWDQALDLVLRSKG---LGRRQEGNVLLIAPIAELAEQSRGAHLEQALDARLEPLRREL 115 Query: 131 IADSNIRVEMVS--------DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 I + + ++ D +L G D++ + + G + Sbjct: 116 IPVYHAKASDLAELLLASLADDGILAGRGSLSVDARTNTLVVAQPADRLGEIR------- 168 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ L++ QV ++ I E D K +G + Sbjct: 169 RLVAQLDVPVR-QVMIEARIVEANIDYEKALGVRWGGPLYGQDNRLGSELFVDLGVERAT 227 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 V + + L A+E++ +++P + ++A G + Y+ + S Sbjct: 228 SALGVGLLRSDVLLDLELSAMEKSGNGEIISQPRVVTADKETARILKGTEVPYQETTKS- 286 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 GATS++ + + L TP + G++ + ++ EP ++P R + + V + Sbjct: 287 GATSISFREASLSLEVTPQITPDGKVIMEVRVTKDEPDFVNALNNVPPIRKNEVNAKVRV 346 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +G TIV+ G+ + + +P +P +G LFR +++E+ + TP + Sbjct: 347 TNGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 402 >gi|254369170|ref|ZP_04985182.1| type IV pilus assembly protein [Francisella tularensis subsp. holarctica FSC022] gi|157122120|gb|EDO66260.1| type IV pilus assembly protein [Francisella tularensis subsp. holarctica FSC022] Length = 590 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 73/416 (17%), Positives = 155/416 (37%), Gaps = 34/416 (8%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84 P A + + + +++ ++ + + +D+++V P ++V+ S Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 L K + + + L++ +R + + + FI + + Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292 Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + +G + + + S A + T + K+V+N ++I DQV ++ Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPCIKEVVNEIDIPN-DQVLIEA 349 Query: 201 TIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251 I EV R ++GF + + + G + + + G Sbjct: 350 RIVEVLRTSALELGFNYDVVDPSGRVNIGLYTFNSNPNSAPGPTPTPVDTFVGTTAKLAY 409 Query: 252 ---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 E + ALE + +A P L + Q A F G+ + ++++GA +V Sbjct: 410 TIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVA 468 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELP 363 + + L TP + G I + I + P + R+ T V Sbjct: 469 FQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTK 528 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++ Sbjct: 529 DGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 584 >gi|253998742|ref|YP_003050805.1| type II and III secretion system protein [Methylovorus sp. SIP3-4] gi|253985421|gb|ACT50278.1| type II and III secretion system protein [Methylovorus sp. SIP3-4] Length = 675 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 79/468 (16%), Positives = 169/468 (36%), Gaps = 63/468 (13%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 P E A I + + + I+ L+K I V + + D + T Sbjct: 185 PVSLEFRDANIKMVFEALSRATGINFILDKDIRADAK---ATVYIRKASIEDAIEMVLAT 241 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLD-------ILIERDIAHLEMTLRRFIADSNIRVE 139 L K + + + ++ + +++ + L + TL+ + ++ V+ Sbjct: 242 NGLQKKALTETSALIFPNTPQKVKDYKELMIRSFYLTNASAKQVASTLKTVLKTKDVVVD 301 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + +V+ + ++E ++ + + +V L+ Sbjct: 302 ERLNMIVMRDTP-------EVIHIAEKLVAANDL------------------ADPEVMLE 336 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------GDFSVK 248 + + E+ R L+++G + S + + G G ++ Sbjct: 337 IEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDSPLTLEGLLNLN 396 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---AT 305 S ++ + + ++ P + + + A G + T +S+ + Sbjct: 397 SSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIITTTSTANVGISE 456 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVEL 362 +VT D G+ L P + + ++I EVS + N + + R A T + L Sbjct: 457 NVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTIGTRNASTLLRL 516 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G +LAGL++D+ ++ +P L IPILG LF N + +TEI +A TP ++ Sbjct: 517 KDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIVLAITPRIL--- 573 Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 ++ RPD + ++ N I + + G + A G Sbjct: 574 --GNIRRPD------AEISEYWSGTENGISDKPQLAAPAGGGSQAASG 613 >gi|50083568|ref|YP_045078.1| putative general secretion pathway protein [Acinetobacter sp. ADP1] gi|49529544|emb|CAG67256.1| putative general secretion pathway protein [Acinetobacter sp. ADP1] Length = 772 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 33/270 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 + + L++ +QV ++ I EV D Q+G Q ++ +SG ++ G S Sbjct: 383 EAAIQQLDVR-REQVLIEAAIIEVSGDDSDQLGIQWALGDLNSGVGLLSFSNVGASLASI 441 Query: 241 -----------------------EGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPT 276 G F+V + ++ ++ AL+ T L+ P+ Sbjct: 442 AAGYASTGTAGAAAAIASGTNSGNGATFAVGDFSNSRKAYGALIQALKSNTKSNVLSTPS 501 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPGRIG 329 + + + A G + T S STG T+V D GV L P + G + Sbjct: 502 IVTMDNEEAYIVVGQNVPFVTGSVSTGSTGTINPYTTVERKDVGVTLKVIPHIGENGTVR 561 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 L ++ EVS+ R T V G T+VL GL+ D+ ++GIP LS Sbjct: 562 LEVEQEVSDVQSSKGQATDLVTNKRAIKTAVLAEHGQTVVLGGLISDNTSLTRQGIPGLS 621 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LFR + E+ + + P ++ Sbjct: 622 NIPYLGRLFRADSKSNEKRNLLVFIHPTII 651 >gi|325204768|gb|ADZ00222.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240355] Length = 761 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 99/257 (38%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + S+ + + L A E + +TLA P + + + Sbjct: 555 GDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 735 GKKTDRRELLIFITPRI 751 >gi|83749448|ref|ZP_00946440.1| General secretion pathway protein D [Ralstonia solanacearum UW551] gi|207738427|ref|YP_002256820.1| gspd-related protein [Ralstonia solanacearum IPO1609] gi|83723885|gb|EAP71071.1| General secretion pathway protein D [Ralstonia solanacearum UW551] gi|206591793|emb|CAQ58699.1| gspd-related protein [Ralstonia solanacearum IPO1609] Length = 657 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 85/467 (18%), Positives = 161/467 (34%), Gaps = 58/467 (12%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 + + + P E + A + + + ++ +K ++ V V + + T A Sbjct: 176 ALSAAFRKPISLEFHDAQMRQVFEVLSRASGLNFVFDKD--VRTDQKV-TVFLRNSTVAS 232 Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 VV V + ++ + + +L D + T Sbjct: 233 VVNTVLLTNQLEQRVLDGNAILIYPNTPAK-----QRDYQPLTVRTFVLSNSDAKDVANT 287 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L+ + +I V+ + +V+ IQ +++ V + E Sbjct: 288 LKTILKTRDIVVDEKRNMIVMRDTPDAIQAAEKLVAVHEM-------------------- 327 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 E +V L+V I EV+R L+ +G Q S + + S + Sbjct: 328 -----PEPEVMLEVEILEVKRSRLQDLGIQLPSQLSLTPLASSSGGTLTLDDLRHLNPTR 382 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303 + + + ++A LA P + + + A G + T +S+ Sbjct: 383 IGATVSPLNVN--VNAAVTD--TNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGFV 438 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360 A +V D G+ L PTV + +RI EVS+ V + R A T + Sbjct: 439 AENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSIAYEIGTRNATTLL 498 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G +LAGL++D+ + +P L IP LG LF N+ ++EI ++ TP +++ Sbjct: 499 RLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRVIR 558 Query: 421 PVAMRDLSRPDDHYSVEDDAKA---FFFNRVNKIYGPKEASEVEGQN 464 P +L + E + R P + Sbjct: 559 PAQRPNLGSAEFDSGTESSLRLKSSMLHERSEPAPNPVAPGAAPTPS 605 >gi|229524610|ref|ZP_04414015.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis VL426] gi|229338191|gb|EEO03208.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis VL426] Length = 571 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86 + I ++ ++ ++ + V Q VL V R Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 + G + +I + + R L I + + ++ + Sbjct: 219 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + T + ++++ L+I + QV ++ I V+ Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 331 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242 L+++G + + ++ S + + Sbjct: 332 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 391 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F V + + L AL+ + ++ P L + Q A G + Y SS+ Sbjct: 392 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 450 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360 GA +V + L TP + R+ L + + G+ S ++ T V Sbjct: 451 GAPTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569 >gi|254285824|ref|ZP_04960786.1| fimbrial assembly protein [Vibrio cholerae AM-19226] gi|150424006|gb|EDN15945.1| fimbrial assembly protein [Vibrio cholerae AM-19226] Length = 578 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86 + I ++ ++ ++ + V Q VL V R Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 + G + +I + + R L I + + ++ + Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + T + ++++ L+I + QV ++ I V+ Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 338 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242 L+++G + + ++ S + Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGLLADDEFPVDEFLNVNLASTSANASS 398 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F V + + L AL+ + ++ P L + Q A G + Y SS+ Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360 GA++V + L TP + R+ L + + G+ S ++ T V Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576 >gi|161830646|ref|YP_001597710.1| type II and III secretion system family protein [Coxiella burnetii RSA 331] gi|161762513|gb|ABX78155.1| bacterial type II and III secretion system family protein [Coxiella burnetii RSA 331] Length = 349 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 4/241 (1%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +++ L+I QV +K I + L +G +++ + D + Sbjct: 90 QSLVSQLDIPI-HQVLIKARIISISDHNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQF 148 Query: 242 G-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G D + + + L ALE+ + L+ P L + Q+A G+ + + Sbjct: 149 GVADIPIIKFKNGQLLDLTLSALEQEGRAQVLSCPELMTNNRQTA-IIESGEAIPYQEKT 207 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G TSVT + L TP VL RI L++ + + +P+ + ++ T V Sbjct: 208 GQGNTSVTFKKATLRLKVTPVVLPGNRILLQLNVNQDKMSSFL-VNGVPTIQTQQLTTKV 266 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + T+VL G+ + QQ + GIP L KIPILG LFR+ + + E ++ I TP ++ Sbjct: 267 MVNNQETVVLGGIYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIIS 326 Query: 421 P 421 P Sbjct: 327 P 327 >gi|157377488|ref|YP_001476088.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3] gi|157319862|gb|ABV38960.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3] Length = 724 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 61/304 (20%), Positives = 110/304 (36%), Gaps = 46/304 (15%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + ++T + + V+N L+I QV ++ I EV G Q + Sbjct: 315 IMAHADTNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVGEGDDVGFGVQWAT 373 Query: 220 TGSSSGPSKSFAADFG--------------------------------------GKFVSE 241 + G + Sbjct: 374 AAGGGTQFNNLGPTIGEIGAGVWQAQEKEASQTCTGSGDNKTCTDNPATQGDITLLAQAL 433 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + F ++ A+ T LA P++T + Q ASF G + T S+S Sbjct: 434 GKVNGMAWGVAMGDFGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSTS 493 Query: 302 T-----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 + +V + GV L P + + L I+ EVS ++ R+ Sbjct: 494 SSSNTNPFQTVERKEVGVKLKVVPQINEGTSVKLTIEQEVSGINGKTGVD--VTFATRRL 551 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 TTV SG +VL GL+K+++Q+ + +P L +PI+G LF++S +T + + P Sbjct: 552 TTTVMADSGQIVVLGGLIKEEVQESVQKVPFLGDLPIIGHLFKSSSSGTRKTNLMVFIKP 611 Query: 417 FLVK 420 +++ Sbjct: 612 TIIR 615 >gi|215919282|ref|NP_820868.2| type II and III secretion system family protein [Coxiella burnetii RSA 493] gi|206584166|gb|AAO91382.2| type 4 pili secretin (outer membrane porin) [Coxiella burnetii RSA 493] Length = 353 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 4/246 (1%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +++ L+I QV +K I + L +G +++ + D + Sbjct: 94 QSLVSQLDIPI-HQVLIKARIISISDHNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQF 152 Query: 242 G-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G D + + + L ALE+ + L+ P L + Q+A G+ + + Sbjct: 153 GVADIPIIKFKNGQLLDLTLSALEQEGRAQVLSCPELMTNNRQTA-IIESGEAIPYQEKT 211 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G TSVT + L TP VL RI L++ + + +P+ + ++ T V Sbjct: 212 GQGNTSVTFKKATLRLKVTPVVLPGKRILLQLNVNQDKMSSFL-VNGVPTIQTQQLTTKV 270 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + T+VL G+ + QQ + GIP L KIPILG LFR+ + + E ++ I TP ++ Sbjct: 271 MVNNQETVVLGGIYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIIS 330 Query: 421 PVAMRD 426 P + Sbjct: 331 PYEKKS 336 >gi|148550155|ref|YP_001270257.1| type IV pilus secretin PilQ [Pseudomonas putida F1] gi|148514213|gb|ABQ81073.1| type IV pilus secretin PilQ [Pseudomonas putida F1] Length = 420 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 66/420 (15%), Positives = 152/420 (36%), Gaps = 17/420 (4%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +++ T++SI L S+ P + P + + +++ + + V Sbjct: 4 WMKYLLATLLSIPLASATPYQGE-PLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSV 62 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 + +QD V D+V+ S L + G ++ + + + A Sbjct: 63 TLRLQD--VPWDQALDLVLRSKG---LSRRQEGNVLLVAPAAEFAAQSADARVSQVLDAQ 117 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLH----GMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 L+ R + + + ++ ++ G+ +L + Sbjct: 118 LQPLRRELLPIHHAKAADLAQLLLASLEGGGIPTGSLSVDERTNTLVVYLPADRLAE--- 174 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++++ L++ QV ++ I E D K +G + Sbjct: 175 --MRQLVAQLDVPVR-QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGL 231 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + + + L A+E++ +++P + ++A G + Y+ Sbjct: 232 ERAGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQET 291 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 S S GATSV+ + + L TP + ++ + ++ EP ++P R + + Sbjct: 292 SQS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNA 350 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + G TIV+ G+ + + +P +P +G LFR +++E+ + TP + Sbjct: 351 KVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 410 >gi|317484811|ref|ZP_07943707.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6] gi|316923941|gb|EFV45131.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6] Length = 665 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 83/463 (17%), Positives = 150/463 (32%), Gaps = 71/463 (15%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEI-GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 + A P + +A A + + + G + + L T A Sbjct: 182 TLALTAPAPNVAKAMAFLEQVEASDTAGTSATLGLQYGDSKTLA------------ATLA 229 Query: 78 DVVVHSPRTMYLFGKNVGQA-NVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSN 135 ++ + K +++L +L D +L Sbjct: 230 KILKSRDEE---YAKKGRPTVSLVLADERTNSLLIYGDPEAIGMARDAVGSLDIPTPKGK 286 Query: 136 IRVE----MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 V + L ++ T+ + QRA E + ++ + K N L + Sbjct: 287 GDVHLISLSNAKAEDLAQVINTLVERQRAAGT-EDQKPDTVLSKDIKVVADKSTNSLVVT 345 Query: 192 GE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 QV ++ I EV + G +I G++ + Sbjct: 346 ARPDEFEALSNIVAKLDVVRKQVFIEALIMEVSSEASFSFGINWAIGGNTGDAAIVGGVS 405 Query: 234 FGGKFVSEGGDFS-------------------VKGVLDRFSFETVLHALERATAIRTLAE 274 G VS + + ++ +++L+A+ + + LA Sbjct: 406 LNGGAVSLSSSGANKTVSLPAGVSIGAILKDAITVGNTSYNIQSILNAVRGNSDVDVLAT 465 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIG 329 P L + + AS + S++ T D GV L TP + G + Sbjct: 466 PQLLTLDNEEASVEVVDNIPFTKESTTRNDNDFTTQSMDYKDVGVKLKITPRISDDGSLR 525 Query: 330 LRIQTEVSEPVIG----VNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 L ++ EVS G N + P+ R R TT+ L T V+ GLL D + Sbjct: 526 LEVEQEVSRVTQGLITLTNGDQLVAPTTRKRLVKTTILLQDSQTAVIGGLLDDQKTYNQS 585 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +P L IP+LG LF++ +T +FI TP +++ A Sbjct: 586 EVPGLGSIPVLGWLFKSRNKKSTQTNLFIFITPKVIRNAADSA 628 >gi|240949528|ref|ZP_04753868.1| type II secretory pathway, component HofQ [Actinobacillus minor NM305] gi|240296101|gb|EER46762.1| type II secretory pathway, component HofQ [Actinobacillus minor NM305] Length = 443 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 103/272 (37%), Gaps = 21/272 (7%) Query: 178 NSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSI----------TGS 222 + + N++++ +Q+ ++ I + + L ++G + + G+ Sbjct: 162 KDNPSSIKNMISLIKELDKPTEQIAIEARIVTISSENLHELGVRWGMLSPNASHSRLGGT 221 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G + F GG +V ++ + L ALE+ ++ +A P L Sbjct: 222 LEGNGVDSTKNLNVNFPVSGGASAVLQVASINSKVLDLELSALEQENSVEIIASPRLLTT 281 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-- 338 + + AS G + Y + V + + L TP + +I + + + Sbjct: 282 NKKLASIKQGTEIPYAIYDRKSETYDVEFKEAVLGLQVTPHISKDNQILMDLVVTQNSQG 341 Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 V + S ++ +T V G TIVL G+ + + + +P+L IP L Sbjct: 342 QSVVSSTSDNAAVSIDKQELNTQVFAKHGETIVLGGIFQHLKTKDSDRVPVLGSIPFLKH 401 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 LF + + E+ I TP++++ + Sbjct: 402 LFSYQKDQISKRELVIFVTPYIIQANDINAQP 433 >gi|148360420|ref|YP_001251627.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str. Corby] gi|296106514|ref|YP_003618214.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99 Alcoy] gi|148282193|gb|ABQ56281.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str. Corby] gi|295648415|gb|ADG24262.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99 Alcoy] Length = 698 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 57/290 (19%), Positives = 111/290 (38%), Gaps = 28/290 (9%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 D + + T ++++ L+I + QV ++ I EV +D + IG Sbjct: 394 SDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPVK-QVLIEARIVEVTKDFSQDIG 452 Query: 215 FQHSITGSSSGPSKSFAAD-------------------------FGGKFVSEGGDFSVKG 249 + ++ + A+ ++ Sbjct: 453 IRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLNLDLAAAPLTGATPASVGIALAK 512 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + D + L ALE ++ P L + Q A+ G+ + ++S+GAT+V Sbjct: 513 LNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAVIESGEEIPYQEATSSGATAVAF 571 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + L TP + G+I + +Q P +P+ ++ T V + +G TIV Sbjct: 572 KKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLGVPAIITKEIQTNVLVNNGQTIV 630 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ K D ++ IP ++P++G LF N + + E+ I TP ++ Sbjct: 631 LGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680 >gi|325206729|gb|ADZ02182.1| type IV pilus secretin PilQ [Neisseria meningitidis M04-240196] Length = 761 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D + S+ + + L A E + +TLA P + + + Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 735 GKKTDRRELLIFITPRI 751 >gi|224368244|ref|YP_002602407.1| GspD1 [Desulfobacterium autotrophicum HRM2] gi|223690960|gb|ACN14243.1| GspD1 [Desulfobacterium autotrophicum HRM2] Length = 653 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 71/355 (20%), Positives = 130/355 (36%), Gaps = 39/355 (10%) Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G + + + L L L+ V+ + + I D + + Sbjct: 279 RGDEKIRVYYLEHATAEDLAKVLQEMP------VKKSAQSTEGKKTAPVISDMVKIMADK 332 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 T + ++V++ L+I V ++ I EV + ++G Q I Sbjct: 333 ATNSLIIMAEKEDYPVLEEVIHKLDIP-RAMVYIECLIMEVNVESGFELGTQWQIGDGYD 391 Query: 225 GPS---------KSFAADFGGKFVSEGGDFSVKGVLDR-------------FSFETVLHA 262 S SF GG F S G + V+ A Sbjct: 392 TDSDGNDQGVYFGSFKGSDGGSFTSAAAGGLGSGFSAGIMGKSITIGGVSFPTLGAVIQA 451 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------STGATSVTTHDYGV 314 + L+ P + + A+ T G Y+T SS ++ S D G+ Sbjct: 452 YQSDKDSHILSTPQILTTDNEEATLTIGKNVPYQTRSSVDNDTTLTTSSYNSYEYKDVGI 511 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGL 373 L TP + + L + E+++ + + D P+ RK +TT+ + G T+V+ GL Sbjct: 512 TLKITPQISKDRLVRLNVYQEITKLDSSASQSTDRPTTLKRKIETTLIVEDGNTVVIGGL 571 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDL 427 + + + + +P L IP L LF+ + E+T +++ TP +VK P+ +L Sbjct: 572 IDETLSSSEYKVPCLGDIPGLSYLFKTTSTGDEKTNLYVFLTPRVVKNPLEASEL 626 >gi|56461126|ref|YP_156407.1| Type II secretory pathway, component PulD [Idiomarina loihiensis L2TR] gi|56180136|gb|AAV82858.1| Type II secretory pathway, component PulD [Idiomarina loihiensis L2TR] Length = 708 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 57/284 (20%), Positives = 103/284 (36%), Gaps = 48/284 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +KV+ L+I QV ++ I E+ G Q + G + Sbjct: 342 EKVIRDLDIR-RAQVQVEAIIVEIMEGDNVDFGVQWISEDGGMVQYNNGNQVPIGSLAAG 400 Query: 242 ----------------------------------------GGDFSVKGVLDRFSFETVLH 261 G + + + V+ Sbjct: 401 AYQAREREGTTTTRITDGGVEVTTTEPDEPGDVSLLANLLGSVNGMMFGTIQNDWAAVVQ 460 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVL 316 A+ + T LA P++ + + ASF G + + S++ +V + G+ L Sbjct: 461 AVTQDTRSNILATPSIVTVDNEEASFLVGQEVPTISGSTTGDNNDNPFQTVDRTEIGIKL 520 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + + + I+ EVS + R+ TTV G TIVL GL+ + Sbjct: 521 KVTPQINEGDAVQMTIEQEVSSLSGATAVDVI--INKRELKTTVMADDGETIVLGGLIDE 578 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 D+Q+ +PLL IPILG LF ++ ++++ + + P +V+ Sbjct: 579 DVQESVSKVPLLGDIPILGKLFSSTSTSKQKRNLMVFIRPTIVR 622 >gi|212217864|ref|YP_002304651.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii CbuK_Q154] gi|212012126|gb|ACJ19506.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii CbuK_Q154] Length = 353 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 4/246 (1%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +++ L+I QV +K I + L +G +++ + D + Sbjct: 94 QSLVSQLDIPI-HQVLIKARIISISDHNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQF 152 Query: 242 G-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G D + + + L ALE+ + L+ P L + Q+A G+ + + Sbjct: 153 GVADIPIIKFKNGQLLDLTLSALEQEGRAQVLSCPELMTNNRQTA-IIESGEAIPYQEKT 211 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G TSVT + + L TP VL RI L++ + + +P+ + ++ T V Sbjct: 212 GQGNTSVTFNKATLRLKVTPVVLPGNRILLQLNVNQDKMSSFL-VNGVPTIQTQQLTTKV 270 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + T+VL G+ + QQ + GIP L KIPILG LFR+ + + E ++ I TP ++ Sbjct: 271 MVNNQETVVLGGIYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIIS 330 Query: 421 PVAMRD 426 P + Sbjct: 331 PYEKKS 336 >gi|167625988|ref|YP_001676282.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4] gi|167356010|gb|ABZ78623.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4] Length = 688 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 120/307 (39%), Gaps = 28/307 (9%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQ 195 + +L G ++ ++ ++ + + + + + V L+ + Q Sbjct: 381 AKAKDIAALLKGEDSSLLTAR--GSVAVDERTNTLLVKDTEETLENVHRLIEVLDIPIKQ 438 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------- 241 V ++ + V+ D+ + +G + +T S + + G + Sbjct: 439 VLIEARMVTVKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNLP 498 Query: 242 -------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 F V + D + L ALE+ +A P +T S Q A++ G + Sbjct: 499 AAVANPTSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEI 557 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYR 352 +SS+GAT+VT + L TP + R+ L ++ V+ G S Sbjct: 558 PYVEASSSGATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSID 617 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 ++ T V + G TIVL G+ + + +P+L IP LG +FRNS E E+ I Sbjct: 618 TQRIGTQVLVDHGETIVLGGIYQQQLITKVSKVPILGDIPYLGFMFRNSSDKNERQELLI 677 Query: 413 AATPFLV 419 TP +V Sbjct: 678 FVTPKIV 684 >gi|312882862|ref|ZP_07742594.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC BAA-2122] gi|309369381|gb|EFP96901.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC BAA-2122] Length = 674 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 56/319 (17%), Positives = 116/319 (36%), Gaps = 48/319 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKVTIAE 204 G +T + V ++ + + + + V+ L+I QV ++ I E Sbjct: 296 SGTKKTQGSKRGDVVIAAHVETNALVLTAPPDIMIALQDVIAQLDIR-RAQVLIEALIVE 354 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237 + +G Q S + + + G+ Sbjct: 355 MAEGDGINLGVQWGSLESGASIQFANSGTPIGQVMVGVEEAKEQTSTEYYTDKDGNRQPY 414 Query: 238 -----------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + G + + ++ A+ + L+ P++T + AS Sbjct: 415 NVTKPGDYSTLASALGSVNGAALSVVMGDWMALISAVSTDSNSNILSSPSITVMDNGEAS 474 Query: 287 FTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 F G + T ++ +V + G+ L P + + L+I+ EVS + Sbjct: 475 FIVGEEVPVITGSAAGSNNENPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSNVLG 534 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 A D+ + R+ +T+V + G IVL GL+ + + + +PLL IP LG LF+++ Sbjct: 535 ANGAVDV-RFAKRQLNTSVMVEDGQMIVLGGLIDERALESESKVPLLGDIPYLGHLFKST 593 Query: 402 RFNREETEIFIAATPFLVK 420 R E+ + + P +++ Sbjct: 594 RTQVEKKNLMVFIKPTIIR 612 >gi|262166650|ref|ZP_06034387.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223] gi|262026366|gb|EEY45034.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223] Length = 545 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 115/309 (37%), Gaps = 28/309 (9%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + ++ + G V + + T + ++++ L+I + QV Sbjct: 237 KASDIAAMIGGEGNVNMLSERGTISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 295 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232 ++ I V+ L ++G + + ++ S Sbjct: 296 QIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVN 355 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + F V + + L AL+ + ++ P L + Q A G + Sbjct: 356 LAAASTNASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 415 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350 Y SS+GAT+V+ + L TP + R+ L + + G+ S Sbjct: 416 IPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 474 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ Sbjct: 475 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 534 Query: 411 FIAATPFLV 419 I TP +V Sbjct: 535 LIFVTPKVV 543 >gi|332701375|ref|ZP_08421463.1| general secretion pathway protein D [Desulfovibrio africanus str. Walvis Bay] gi|332551524|gb|EGJ48568.1| general secretion pathway protein D [Desulfovibrio africanus str. Walvis Bay] Length = 746 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 116/316 (36%), Gaps = 22/316 (6%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + + + R + T L G V + D L+ Sbjct: 421 IGQQIAQQREAPQARQRDTNITGELTGEVVFVVDVTTNSILTRANSDDYRTVLS------ 474 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 V+ L+I QV ++V IAEV Q+G +G + + Sbjct: 475 -VIEKLDI-YPKQVLIEVIIAEVSLTDETQLGIDWRYLLDMTGNASIDFSLSNNPSTFTS 532 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------- 294 G + ++D L AL + + L+ P + + + A G + Sbjct: 533 GLAAT--LVDGDRLRATLRALASSNRTQILSSPHILSSNHSEAKIDVGQEVPILTQTTET 590 Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPS 350 + S+ ++ + G++L TP + G + + I E+S V A + P Sbjct: 591 VDTTDPDNVSSVQQNIQYRNTGILLSVTPHINERGLVRMEISQEISSIEETSVGAINSPL 650 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R R A TTV + TIV+ GL++ + + +P + +IP+L LF + + E+ Sbjct: 651 FRKRLATTTVVVNDEQTIVIGGLMEQENTDNENNVPFVRRIPLLKYLFGYELKSFDNREL 710 Query: 411 FIAATPFLVKPVAMRD 426 I TP +V+ D Sbjct: 711 LIFITPHVVESREDND 726 >gi|229507318|ref|ZP_04396823.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286] gi|229509758|ref|ZP_04399239.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33] gi|229513553|ref|ZP_04403017.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21] gi|229516883|ref|ZP_04406329.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9] gi|229521696|ref|ZP_04411114.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80] gi|229606824|ref|YP_002877472.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236] gi|262158485|ref|ZP_06029600.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1] gi|262170121|ref|ZP_06037810.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27] gi|229341290|gb|EEO06294.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80] gi|229345946|gb|EEO10918.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9] gi|229349430|gb|EEO14386.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21] gi|229353232|gb|EEO18171.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33] gi|229354823|gb|EEO19744.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286] gi|229369479|gb|ACQ59902.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236] gi|262021529|gb|EEY40241.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27] gi|262029646|gb|EEY48295.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1] Length = 571 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 70/419 (16%), Positives = 142/419 (33%), Gaps = 43/419 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86 + I ++ ++ ++ + V Q VL V R Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 + G + +I + + R L I + + ++ + Sbjct: 219 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + T + ++++ L+I + QV ++ I V+ Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 331 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242 L+++G + + ++ S + + Sbjct: 332 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 391 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F V + + L AL+ + ++ P L + Q A G + Y SS+ Sbjct: 392 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 450 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360 GA++V + L TP + R+ L + + G+ S ++ T V Sbjct: 451 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569 >gi|229577502|ref|YP_001178510.2| outer membrane porin HofQ [Enterobacter sp. 638] Length = 413 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 5/231 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251 QV L+ I + L+++G + ++ + + G V G + Sbjct: 181 QVQLEAHIVTINEKSLRELGVKWNLAEAQGAGAPGQVTTMGADLSVANATTHVGFNIGRI 240 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + L ALE+ + +A P L A Q AS G + Y+ S +GATSV + Sbjct: 241 DGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGATSVEFKE 300 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + TP VL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 301 AVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEVKSGETLA 360 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G+ + + +P L +P+LG FR+ + E E+ + TP L+ Sbjct: 361 LGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLID 411 >gi|120553763|ref|YP_958114.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8] gi|120323612|gb|ABM17927.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8] Length = 704 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 62/332 (18%), Positives = 129/332 (38%), Gaps = 40/332 (12%) Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--- 181 T ++ + +R++++ V + + + S F+S R + Sbjct: 372 ETNKQIAELAPVRLDIIQVNYAKAADVVALIQADEELISSRGFVSSDARTNTISVRETAE 431 Query: 182 -----KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------------- 220 +++++ ++ QV+++ I + ++ + +G + Sbjct: 432 KLEEIRRLVSTWDVPVR-QVSIEARIVRAQTNVAEDLGVRWGGAAYNVDGDDVITVGGSL 490 Query: 221 ------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 GS++ G F++ D F + L ALE Sbjct: 491 GTLQEARDAASGGSNTISFPGALGVDLGVSGDGASSFAIGWGSDDFLVDLELSALESDGR 550 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 +++P + Q+AS SG + Y+ +SS GAT++ + + L TP + +I Sbjct: 551 AEVVSQPRVVTADRQTASIKSGEEIPYQEATSS-GATNIEFKEAVLSLEVTPQITPDDKI 609 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + + V++ G +PS + T V + +G T+VL G+ + ++ P L Sbjct: 610 IMDLV--VNQDSRGEVTAGIPSINTNEVTTQVLVANGETVVLGGIFQSEVATQTTKTPFL 667 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP LG LF+ + E +E+ I TP ++K Sbjct: 668 GDIPYLGRLFKRTEHIDERSELLIFITPKIIK 699 >gi|145320312|gb|ABP62459.1| type IV pilus secretin PilQ [Enterobacter sp. 638] Length = 373 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 5/231 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251 QV L+ I + L+++G + ++ + + G V G + Sbjct: 141 QVQLEAHIVTINEKSLRELGVKWNLAEAQGAGAPGQVTTMGADLSVANATTHVGFNIGRI 200 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + L ALE+ + +A P L A Q AS G + Y+ S +GATSV + Sbjct: 201 DGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGATSVEFKE 260 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + TP VL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 261 AVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEVKSGETLA 320 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G+ + + +P L +P+LG FR+ + E E+ + TP L+ Sbjct: 321 LGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLID 371 >gi|255320952|ref|ZP_05362125.1| general secretion pathway protein D [Acinetobacter radioresistens SK82] gi|262379956|ref|ZP_06073111.1| general secretion pathway protein D [Acinetobacter radioresistens SH164] gi|255301916|gb|EET81160.1| general secretion pathway protein D [Acinetobacter radioresistens SK82] gi|262298150|gb|EEY86064.1| general secretion pathway protein D [Acinetobacter radioresistens SH164] Length = 751 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 99/268 (36%), Gaps = 31/268 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L+I QV ++ I EV D Q+G Q ++ SSG + G S Sbjct: 377 ESAIQQLDIR-RQQVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLVNFTNVGSSLASL 435 Query: 242 GGDFSVKGV------------------------LDRFSFETVLHALERATAIRTLAEPTL 277 + G R + ++ AL+ T L+ P++ Sbjct: 436 AAGYLAGGSALANAASNLRGSSLLLGDYREGADGSRRLYGALIQALKDNTKSNLLSTPSI 495 Query: 278 TAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + A G + T S + T+V D GV L P + G + L Sbjct: 496 VTMDNEEAYIVVGQNVPFVTGSVTTNANGVNPYTTVERKDVGVTLKVIPHIGENGTVRLE 555 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EVS R T V G T+VL GL+ D+ ++ +P L I Sbjct: 556 VEQEVSNVQPNKGQATDLVTSKRAIKTAVLAEHGQTVVLGGLISDNSIYSRQAVPGLGAI 615 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P +G LFR+ + E+ + + P +V Sbjct: 616 PGIGRLFRSDSNSNEKRNLLVFIHPTIV 643 >gi|325131459|gb|EGC54166.1| type IV pilus secretin PilQ [Neisseria meningitidis M6190] gi|325137566|gb|EGC60147.1| type IV pilus secretin PilQ [Neisseria meningitidis ES14902] gi|325197687|gb|ADY93143.1| type IV pilus secretin PilQ [Neisseria meningitidis G2136] gi|325201543|gb|ADY96997.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240149] gi|325207524|gb|ADZ02976.1| type IV pilus secretin PilQ [Neisseria meningitidis NZ-05/33] Length = 769 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 504 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 562 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D + S+ + + L A E + +TLA P + + + Sbjct: 563 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 622 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 623 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 682 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 683 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 742 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 743 GKKTDRRELLIFITPRI 759 >gi|254804373|ref|YP_003082594.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis alpha14] gi|304388332|ref|ZP_07370446.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091] gi|254667915|emb|CBA04080.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis alpha14] gi|254670030|emb|CBA04815.1| fimbrial assembly protein [Neisseria meningitidis alpha153] gi|261393150|emb|CAX50762.1| type IV pilus secretin PilQ [Neisseria meningitidis 8013] gi|304337694|gb|EFM03849.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091] gi|325133588|gb|EGC56249.1| type IV pilus secretin PilQ [Neisseria meningitidis M13399] gi|325141680|gb|EGC64140.1| type IV pilus secretin PilQ [Neisseria meningitidis 961-5945] Length = 761 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D + S+ + + L A E + +TLA P + + + Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 735 GKKTDRRELLIFITPRI 751 >gi|227327883|ref|ZP_03831907.1| general secretion pathway protein D [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 684 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 69/367 (18%), Positives = 133/367 (36%), Gaps = 43/367 (11%) Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLH 148 ANV+ ++ + + + + L R+ N +V +D V VL Sbjct: 253 TANVVADERTNSVLVRGEPNSRQRVIDMVKQLDRQQAVQGNTKVIYLKYAKATDLVEVLT 312 Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 G+ +IQ Q+ + +T ++V+ L+I QV Sbjct: 313 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 371 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240 ++ IAEV+ +G Q + + + + Sbjct: 372 VEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATTA 431 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296 GG + + ++ +L AL + + LA P++ + A+F G + + Sbjct: 432 LGGFNGIAAGFYQGNWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 491 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRV 353 T S +V G+ L P + + L I+ EVS + ++ Sbjct: 492 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGATFNT 551 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + + Sbjct: 552 RTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNLMLF 611 Query: 414 ATPFLVK 420 P +++ Sbjct: 612 IRPSIIR 618 >gi|325135596|gb|EGC58213.1| type IV pilus secretin PilQ [Neisseria meningitidis M0579] Length = 761 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D + S+ + + L A E + +TLA P + + + Sbjct: 555 DDKWEAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 735 GKKTDRRELLIFITPRI 751 >gi|123443548|ref|YP_001007521.1| general secretion pathway protein D [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090509|emb|CAL13378.1| general secretion pathway protein D [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 648 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 100/263 (38%), Gaps = 12/263 (4%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227 + +V+ L++ QV ++ I E + +G Q + Sbjct: 330 TADPKVMKELDQVIERLDVR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGANFLQKP 388 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 S + + + +++ + AL + LA P++ + A F Sbjct: 389 NSIQTNNNSGNPIPMMIAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEF 448 Query: 288 TSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G + T + +T S++ GV+L P + + L I+ EVS Sbjct: 449 NVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSS 508 Query: 344 NAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + R + V + SG T+V+ GLL I ++ +PLL IP +G LFR Sbjct: 509 DVNANNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQ 568 Query: 401 SRFNREETEIFIAATPFLVKPVA 423 S+ E++ + + P +++ + Sbjct: 569 SKEKIEKSNLILFIRPTILRETS 591 >gi|299065464|emb|CBJ36633.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CMR15] Length = 714 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231 QV ++ I E + +G + S+G Sbjct: 462 RQVMIEARIVEADDTFSRNLGAKLGFAAKSNGSGVGNTYSNVVSPVTQNGTWDNSAAVSL 521 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 522 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 581 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV+ + L TP + G + L +V++ +G + + Sbjct: 582 TEVPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNVFLD--VDVNKDSLGTQTTNGFA 638 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + IPLL IP+LG LF+++ + TE+ Sbjct: 639 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKIPLLGDIPVLGNLFKSTAKTNDRTEL 698 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 699 LVFLTPRVL 707 >gi|262280702|ref|ZP_06058485.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] gi|262257602|gb|EEY76337.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] Length = 758 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 65/269 (24%), Positives = 106/269 (39%), Gaps = 32/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 + + L+I QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDIR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 241 -----------------------EGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPT 276 G F+V + ++ ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGSAGAASAIAGGANKGNGATFAVGNFENSRKAYGALIQALKANTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S + T+V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD++ ++GIP LS Sbjct: 561 EVEQEVSNVQTSKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVELSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LFR+ + + + + P +V Sbjct: 621 IPYLGRLFRSDSRSNTKRNLLVFIHPTIV 649 >gi|70733953|ref|YP_257593.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens Pf-5] gi|68348252|gb|AAY95858.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens Pf-5] Length = 583 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 104/257 (40%), Gaps = 23/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241 +++ L++ QV ++ I E D K +G + + + G + S Sbjct: 319 RIVAQLDVPVR-QVMIEARIVEANVDYDKSLGVRWGGSVQNQGNWSASGVQNAASGSSSI 377 Query: 242 --------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + D + L A+E+ +++P + Sbjct: 378 GAPGSGGSNSPFVDLGASAHTSGIGIAYITDNVLLDLELTAMEKTGNGEIVSQPKVVTSD 437 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y+ SS+GATSV+ + + L TP + RI + ++ EP Sbjct: 438 KETAKILKGTEIPYQEA-SSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 496 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 D+P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR Sbjct: 497 LNKVQDVPPIKKNEVNAKVLVNDGATIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 556 Query: 402 RFNREETEIFIAATPFL 418 + +++E+ + TP + Sbjct: 557 VVSEKKSELLVFLTPRI 573 >gi|332308478|ref|YP_004436329.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175807|gb|AEE25061.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica 4H-3-7+YE-5] Length = 552 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 23/251 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L+ I EV Q G S ++SG + S + G +S Sbjct: 281 RQVILEARILEVSLSDGYQQGINWSEILANSGSTDFQFSTTSGSLGDAISATLGGVTSLS 340 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302 F VL+ L+ ++ L+ P +TAI+ Q A G + T SS Sbjct: 341 FVNKDFSGVLNLLQTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSESTVTAATA 400 Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PS 350 +T G+ L TP + + G + L + V E + + Sbjct: 401 STTPNIELTPFFSGIALDVTPQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLAA 460 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT + SG +V+ GL++ I + + PLL IP+LG LF+N + + + E+ Sbjct: 461 SNIRESDTIIHARSGEIVVIGGLMQSIISETESKTPLLGDIPLLGNLFKNRQESEIKKEL 520 Query: 411 FIAATPFLVKP 421 I P +V Sbjct: 521 VILLRPTVVSA 531 >gi|327395552|dbj|BAK12974.1| protein transport protein HofQ precursor HofQ [Pantoea ananatis AJ13355] Length = 430 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 108/258 (41%), Gaps = 7/258 (2%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230 + A + + + L++ +QV L I + + L ++G + +++ Sbjct: 164 DSPAALEETARWIGALDVPL-EQVELAAHIVTISEEHLHELGVNWRLYNEGDVINRALRH 222 Query: 231 --AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G + + + L ALE+ + +A P L Q+AS Sbjct: 223 PLLDISLGLNSHDVSVGVTLSRIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIK 282 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI--QTEVSEPVIGVNAG 346 G + Y+ + ++GATS+ + + + TP VL GRI L+I V + Sbjct: 283 QGTEIPYEVSAGNSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDS 342 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + S ++ +T V + G T+ L G+ + + +PLL +P++G+LFR + Sbjct: 343 QVLSIDKQEIETQVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQR 402 Query: 407 ETEIFIAATPFLVKPVAM 424 + E+ I TP LV+ + Sbjct: 403 KRELVIFMTPRLVQGSSA 420 >gi|262189810|ref|ZP_06048151.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93] gi|262034306|gb|EEY52705.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93] Length = 571 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86 + I ++ ++ ++ + V Q VL V R Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 + G + +I + + R L I + + ++ + Sbjct: 219 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + T + ++++ L+I + QV ++ I V+ Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 331 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242 L+++G + + ++ S + Sbjct: 332 EGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGLLADDEFPVDEFLNVNLASTSANASS 391 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F V + + L AL+ + ++ P L + Q A G + Y SS+ Sbjct: 392 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 450 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360 GA++V + L TP + R+ L + + G+ S ++ T V Sbjct: 451 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569 >gi|332160534|ref|YP_004297111.1| general secretion pathway protein D [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664764|gb|ADZ41408.1| general secretion pathway protein D [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 648 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 101/263 (38%), Gaps = 12/263 (4%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----S 227 + +V+ L+I QV ++ I E + +G Q + + Sbjct: 330 TADPKVMKELDQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKT 388 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 S + + + +++ + AL + LA P++ + A F Sbjct: 389 NSIQTNNNSGNPIPMMMAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEF 448 Query: 288 TSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G + T + +T S++ GV+L P + + L I+ EVS Sbjct: 449 NVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSS 508 Query: 344 NAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + R + V + SG T+V+ GLL I ++ +PLL IP +G LFR Sbjct: 509 DVNANNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQ 568 Query: 401 SRFNREETEIFIAATPFLVKPVA 423 S+ E++ + + P +++ + Sbjct: 569 SKEKIEKSNLILFIRPTILRETS 591 >gi|325143815|gb|EGC66131.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240013] Length = 801 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 536 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 594 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D + S+ + + L A E + +TLA P + + + Sbjct: 595 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 654 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 655 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 714 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 715 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 774 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 775 GKKTDRRELLIFITPRI 791 >gi|319409865|emb|CBY90178.1| type IV pilus secretin PilQ [Neisseria meningitidis WUE 2594] Length = 761 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D + S+ + + L A E + +TLA P + + + Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 735 GKKTDRRELLIFITPRI 751 >gi|308389910|gb|ADO32230.1| pilQ protein [Neisseria meningitidis alpha710] Length = 761 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D + S+ + + L A E + +TLA P + + + Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 735 GKKTDRRELLIFITPRI 751 >gi|153206247|ref|ZP_01945510.1| bacterial type II and III secretion system family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165919273|ref|ZP_02219359.1| bacterial type II and III secretion system family protein [Coxiella burnetii RSA 334] gi|120577377|gb|EAX34001.1| bacterial type II and III secretion system family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165916996|gb|EDR35600.1| bacterial type II and III secretion system family protein [Coxiella burnetii RSA 334] Length = 349 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 4/246 (1%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +++ L+I QV +K I + L +G +++ + D + Sbjct: 90 QSLVSQLDIPI-HQVLIKARIISISDHNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQF 148 Query: 242 G-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G D + + + L ALE+ + L+ P L + Q+A G+ + + Sbjct: 149 GVADIPIIKFKNGQLLDLTLSALEQEGRAQVLSCPELMTNNRQTA-IIESGEAIPYQEKT 207 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G TSVT + + L TP VL RI L++ + + +P+ + ++ T V Sbjct: 208 GQGNTSVTFNKATLRLKVTPVVLPGNRILLQLNVNQDKMSSFL-VNGVPTIQTQQLTTKV 266 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + T+VL G+ + QQ + GIP L KIPILG LFR+ + + E ++ I TP ++ Sbjct: 267 MVNNQETVVLGGIYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIIS 326 Query: 421 PVAMRD 426 P + Sbjct: 327 PYEKKS 332 >gi|187925571|ref|YP_001897213.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN] gi|187716765|gb|ACD17989.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN] Length = 591 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 81/454 (17%), Positives = 154/454 (33%), Gaps = 49/454 (10%) Query: 4 LQRTFFTMMSIFLFSSN----PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII 59 L+R F + P V P + +NA V K IS+ + + Sbjct: 148 LRRQFAASARADATGTAALEGPPVPLPPLARLSNAPRSAADAVLAPDDKPISLNFQRAEL 207 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV-ILIGHDGKQM-LNLDILIE 117 V A V ++ L K + L+ +G M + +++ Sbjct: 208 GAVLSAFAR-FTGLNIVASERVRGAVSLRLD-KVPWRTAFDTLLDVNGLAMERHGNVIWV 265 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSG 172 IA L R+ E + L + + ++ L +Q Sbjct: 266 APIADLAARERQRF-------EAHARAADLEPLASRTFELHYAHAEDVRRLLTGSGAQRV 318 Query: 173 RNQYANSSSKKVMNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIG 214 ++ +++ NLL + QV ++ I E + +G Sbjct: 319 LSKRGAATADPRTNLLFVTDLEGRLAQIAALLASVDRPTRQVLIEARIVEGEHGFSRNLG 378 Query: 215 FQHSITGSSSGPSKSFAADFG--------GKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + S+ +++ + D G F ++ L ALE Sbjct: 379 VKLSMAATNADGTAKGLTDAGYDLSARPISGFDVATAGLTLFAAGATRLLNIELSALEAQ 438 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 ++ P + A G + Y+ G + V + L P ++ G Sbjct: 439 GRGEIVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQIMPDG 497 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 R+ L + +V++ +G P+ + T VE+ GGT+ + G+ D + +P Sbjct: 498 RVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVEDGGTVSIGGIYATDDRDDVTRVP 555 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +L KIP+LGALFR+ + +E+ + TP +V+ Sbjct: 556 VLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 589 >gi|54310534|ref|YP_131554.1| putative type II secretory pathway, component EpsD [Photobacterium profundum SS9] gi|46914977|emb|CAG21752.1| putative type II secretory pathway, component EpsD [Photobacterium profundum SS9] Length = 670 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 69/384 (17%), Positives = 137/384 (35%), Gaps = 64/384 (16%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN----IRVEMVS--DTV-VLHGMV 151 V+ +L+ D + + + L L + +A S I ++ + D V VL G+ Sbjct: 227 VVADERTNAVLLSGDPQVRKRLRKLIHQLDKEMATSGNNRVIYLKYANAEDMVDVLKGVS 286 Query: 152 RTIQDSQR---------------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 +Q ++ T + + ++ L+I QV Sbjct: 287 DNLQSEKQGASKTPVGSNKSTVMISAHVGTNALIVTAPPDIMRALESIIAQLDIR-RAQV 345 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231 ++ I E+ G Q+ + Sbjct: 346 LIEAMIVELSEGDGINFGVQYGSADGGVIQFGNSNVPISQYAIGLQEAQDVPGSTVINSD 405 Query: 232 ----------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 DF GG + + +++A+ + L+ P++T + Sbjct: 406 GTTTINEATQGDFSTLASVLGGVNGAALGIVMGDWTMLVNAVATDSNSNILSSPSITVLD 465 Query: 282 GQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ASF G + T S+ +V + G+ L+ TP + + L+I+ EV Sbjct: 466 NSEASFIVGEEVPVVTGSTSSSSNDNPFQTVERKEVGIKLNVTPQINEGDSVQLKIEQEV 525 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 S + A D+ + R+ +TTV + G I L GL+ ++ ++ + IP+L IP LG Sbjct: 526 SSVLGASGAVDV-RFAKRQINTTVLVKDGQMIALGGLISEETKESESKIPILGDIPFLGF 584 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LF+++ +T + + P +++ Sbjct: 585 LFKSTNTTTAKTNLMVFIKPTIIR 608 >gi|297581470|ref|ZP_06943393.1| fimbrial assembly protein [Vibrio cholerae RC385] gi|297534308|gb|EFH73146.1| fimbrial assembly protein [Vibrio cholerae RC385] Length = 578 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86 + I ++ ++ ++ + V Q VL V R Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 + G + +I + + R L I + + ++ + Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + T + ++++ L+I + QV ++ I V+ Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPNNIAVIREIIESLDIPVK-QVQIEARIVTVK 338 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242 L+++G + + ++ S + Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGLLADDEFPVDEFLNVNLASTSANASS 398 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F V + + L AL+ + ++ P L + Q A G + Y SS+ Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360 GA++V + L TP + R+ L + + G+ S ++ T V Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576 >gi|313895052|ref|ZP_07828609.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str. F0430] gi|312975947|gb|EFR41405.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str. F0430] Length = 426 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 81/430 (18%), Positives = 164/430 (38%), Gaps = 19/430 (4%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 ++R ++ + P + + + + + + + ++ + V Sbjct: 1 MKRFVIMGLACLALLVPARLYAAPVTIDVTGGDVRTVLLAVARMGNVPLIVDDGVTGAVT 60 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + +P + ++ + R +++ + + + +++ + D A L Sbjct: 61 AHLT----GEPEELLHLIAAARGIHIERRGDVFLALGAEARTENRRVHIYPVRFADPAEL 116 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + R M V +R + + T + + ++ Sbjct: 117 AYAANLSLGGEGKRGNMSKTNDESGNEVSASDTGRRVLVDTATNTLLFYGTEAEAFAVRE 176 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 +++ L++ QV+L+ + V + KQ+G + + PS G+ G Sbjct: 177 IISALDVK-PRQVSLEARVVSVSKAAAKQLGVDWTWSALPQYPSVDAGGRVTGRSTGGGR 235 Query: 244 -----------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 GV F + + AL + LA P +T + G+ A G + Sbjct: 236 TGTSAPGIIRFGRGPAGVPYEFYYSAAISALITDGKAKMLARPNVTTVQGREALINIGAE 295 Query: 293 HLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + S +++ + G++L +TP V + G I R+ TEVS PV V Sbjct: 296 VPVPRTTMSDHVTTSAIDYREAGIILRYTPRVTADGTITARVHTEVSTPVY-VEELKAYR 354 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ R ADTTV L G T+V+ GL+ D + IP L +P+LGA FR+ R N+ E+E+ Sbjct: 355 FQKRSADTTVRLRDGETMVIGGLIDSDESRSLSKIPFLGDLPVLGAFFRSVRTNKTESEL 414 Query: 411 FIAATPFLVK 420 I T ++ Sbjct: 415 MIFLTARVLD 424 >gi|94312199|ref|YP_585409.1| type II and III secretion system protein [Cupriavidus metallidurans CH34] gi|93356051|gb|ABF10140.1| pili assembly protein PilQ [Cupriavidus metallidurans CH34] Length = 710 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 22/245 (8%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVS----- 240 QV ++ I E + +G + S+ G S A + G +S Sbjct: 462 RQVIIEARIVEASDTFSRNLGVKLGFALPKSGSSLSSNYGNSLPNATNDGTPALSLPAAA 521 Query: 241 ------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 FS+ + L ALE + ++ P + + A G + Sbjct: 522 INSVNPATAAFSIFNAAAGRFLDLELSALEADGKGKIISSPRVVTANNIKALIEQGTELP 581 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 Y++ +SS GATSV + L TP + G + L +V++ +G+ + + + Sbjct: 582 YQSATSS-GATSVQFRKANLKLEVTPQITPEGNVLLD--VDVNKDSVGIRTDNGFAIDTK 638 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T V + +GGT+V+ G+ + +P L +P+LG F+N+ TE+ + Sbjct: 639 HVQTQVLVENGGTVVIGGIYSQEESNTVNKVPWLGDLPVLGNFFKNNAKVNNRTELLVFL 698 Query: 415 TPFLV 419 TP ++ Sbjct: 699 TPRVL 703 >gi|316984411|gb|EFV63384.1| type IV pilus secretin PilQ family protein [Neisseria meningitidis H44/76] gi|325200874|gb|ADY96329.1| type IV pilus secretin PilQ [Neisseria meningitidis H44/76] Length = 777 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGG 236 K+++ L++ QV ++ I E + +G + TG +S + FGG Sbjct: 512 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 570 Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + S+ + + L A E + +TLA P + + + Sbjct: 571 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 630 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 631 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 690 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 691 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 750 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 751 GKKTDRRELLIFITPRI 767 >gi|15678016|ref|NP_274809.1| pilQ protein [Neisseria meningitidis MC58] gi|62287061|sp|Q70M91|PILQ_NEIMB RecName: Full=Type IV pilus biogenesis and competence protein pilQ; Flags: Precursor gi|66731938|gb|AAY52170.1| pilQ protein [Neisseria meningitidis MC58] gi|325139633|gb|EGC62172.1| type IV pilus secretin PilQ [Neisseria meningitidis CU385] Length = 769 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGG 236 K+++ L++ QV ++ I E + +G + TG +S + FGG Sbjct: 504 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 562 Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + S+ + + L A E + +TLA P + + + Sbjct: 563 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 622 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 623 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 682 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 683 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 742 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 743 GKKTDRRELLIFITPRI 759 >gi|308272100|emb|CBX28708.1| hypothetical protein N47_G40320 [uncultured Desulfobacterium sp.] Length = 818 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 12/236 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I E ++IG S + S V+ + KG + Sbjct: 580 TPQVVIEARIVEATTSFSREIGVIWSADAGPNSSSSLGGTYDLNAAVNFPTTAANKGTIG 639 Query: 253 ---------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F L A+E + ++ P + + + A+ G ++ Y ++G Sbjct: 640 FDFARINGSPFLLNAKLEAMEAQGEGKIVSAPKICTLDNKEATIKQGLRYPY-NKLDTSG 698 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 T+ D + L P V RI + I+ + + I +N S+ ++A+T + + Sbjct: 699 NTTTVFEDVDLELKVKPHVTPDNRISMLIKIKKRDLGIFINDQQ--SFTNKEAETELLVN 756 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T+V+ G++K IP LS+IPILG F++ + E+ I TP +V Sbjct: 757 DGDTVVIGGIIKTSKNTGGSLIPGLSRIPILGWFFKSDTKTDNKEELLIFITPKIV 812 >gi|161869408|ref|YP_001598575.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442] gi|218767605|ref|YP_002342117.1| pilus secretin [Neisseria meningitidis Z2491] gi|62287129|sp|Q9JVW4|PILQ_NEIMA RecName: Full=Type IV pilus biogenesis and competence protein pilQ; Flags: Precursor gi|121051613|emb|CAM07913.1| pilus secretin [Neisseria meningitidis Z2491] gi|161594961|gb|ABX72621.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442] gi|325129552|gb|EGC52376.1| type IV pilus secretin PilQ [Neisseria meningitidis OX99.30304] Length = 761 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGG 236 K+++ L++ QV ++ I E + +G + TG +S + FGG Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554 Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + S+ + + L A E + +TLA P + + + Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 735 GKKTDRRELLIFITPRI 751 >gi|71279149|ref|YP_267229.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea 34H] gi|71144889|gb|AAZ25362.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea 34H] Length = 706 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 62/315 (19%), Positives = 119/315 (37%), Gaps = 56/315 (17%) Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 ++ V+ ++T+++ ++I+D +R + + L++ Sbjct: 415 GSVSVDERTNTLLIRDTAKSIEDIKRMITI------------------------LDVPVR 450 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT-----------------------------GSSS 224 QV ++ + V+ ++ +++G + +T G Sbjct: 451 -QVVIEARMVTVKDNMNEELGIRWGVTNTDGEFATSGSIEGASSANGTRGVTTPGVGQVP 509 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + + F V + + + L ALE+ +A P +T + + Sbjct: 510 TIGDGLNVNLPVANAAGTIAFQVARLANGTILDLELSALEKENKGEVIASPRITTANQKE 569 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A G + Y+ +SS GAT+ + L TP + +I L + + Sbjct: 570 AYIEQGVEIPYQEAASS-GATATQFKKAVLSLTVTPHITPDDKIILDLVVTQDTISDITS 628 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P+ ++ T V + +G TIVL G+ + I IP+L IP LG LFRNS Sbjct: 629 GF-APAIDTQRIGTQVLVNNGETIVLGGIYQQAIISTVSKIPILGDIPYLGWLFRNSSQL 687 Query: 405 REETEIFIAATPFLV 419 E+ E+ I TP +V Sbjct: 688 NEKKELLIFVTPRIV 702 >gi|89256170|ref|YP_513532.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. holarctica LVS] gi|115314642|ref|YP_763365.1| type IV pilus assembly protein [Francisella tularensis subsp. holarctica OSU18] gi|156502212|ref|YP_001428277.1| type IV pilus secretin [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010550|ref|ZP_02275481.1| type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. holarctica FSC200] gi|290954188|ref|ZP_06558809.1| type IV pilus secretin [Francisella tularensis subsp. holarctica URFT1] gi|295312388|ref|ZP_06803168.1| type IV pilus secretin [Francisella tularensis subsp. holarctica URFT1] gi|89144001|emb|CAJ79239.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. holarctica LVS] gi|115129541|gb|ABI82728.1| type IV pilus assembly protein [Francisella tularensis subsp. holarctica OSU18] gi|156252815|gb|ABU61321.1| type IV pilus secretin [Francisella tularensis subsp. holarctica FTNF002-00] Length = 590 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 72/417 (17%), Positives = 148/417 (35%), Gaps = 36/417 (8%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84 P A + + + +++ ++ + + +D+++V P ++V+ S Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 + + + L + + L N + T Sbjct: 236 G----LATKKMSSILYVATAAEIAAQEQLELQTKRLLENNAILVTEFIPLNYTTAQAAQT 291 Query: 145 VVLH-----GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 V+ G + + + S A + T + K+V+N ++I DQV ++ Sbjct: 292 VITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNDIDIPN-DQVLIE 348 Query: 200 VTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL---- 251 I EV R ++GF + + + G + + + G Sbjct: 349 ARIVEVLRTSALELGFNYGVVDPSSRVNIGLYTFNSNPNPAPGPTPTPVDTFVGTTAKLA 408 Query: 252 ----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 E + ALE + +A P L + Q A F G+ + ++++GA +V Sbjct: 409 YTIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAV 467 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVEL 362 + + L TP + G I + I + P + R+ T V Sbjct: 468 AFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVMT 527 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++ Sbjct: 528 KDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 584 >gi|238760627|ref|ZP_04621755.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236] gi|238701160|gb|EEP93749.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236] Length = 657 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 58/341 (17%), Positives = 116/341 (34%), Gaps = 19/341 (5%) Query: 144 TVVLHGMVRTIQDSQRAVEL---SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + G + V + ++T ++V+ L+I QV ++ Sbjct: 307 QLAGKGQATPAVAMMKNVVIKADAQTNSLIINAAPDLLRDLEQVITQLDIR-RAQVLVEA 365 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFS 255 I EV+ +G Q A ++ G + R + Sbjct: 366 IIVEVQDSDALNLGVQWFNRNGGGSNFPDTGASASSITPNDVGSSLKGVAGLATGFYRGN 425 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHD 311 + + AL + LA P++ + A F+ G + T S +T +V + Sbjct: 426 WSGLFTALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPILTGSQTTTGDNIFRTVDRKN 485 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTI 368 G+ L P + + L I+ EVS G ++ R V + S + Sbjct: 486 VGIKLKVKPQINKGDSVLLEIEQEVSSVAEKAPGGTGDLGATFNTRMVKNAVMVGSNNIV 545 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RD 426 V+ GLL + +PLL IP +G LFR++ + + + P +++ Sbjct: 546 VVGGLLDSTSHDVTSKVPLLGDIPGIGFLFRSTSQKMVKRNLMLFIRPTILREQDSYIDA 605 Query: 427 LSRPDDHYSVEDDAKAFFFN-RVNKIYGPKEASEVEGQNYK 466 ++ D + E + R+N+ + ++ + Sbjct: 606 SNQRLDKFQQEQNTDRTTNGQRINQSLNKALSGGNSLRDLQ 646 >gi|193076133|gb|ABO10746.2| putative general secretion pathway protein [Acinetobacter baumannii ATCC 17978] Length = 758 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 32/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276 + L +F+ ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S + T+V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP +G LFR+ + + + + P +V Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649 >gi|169797464|ref|YP_001715257.1| putative general secretion pathway protein [Acinetobacter baumannii AYE] gi|184156612|ref|YP_001844951.1| Type II secretory pathway, component PulD [Acinetobacter baumannii ACICU] gi|213155722|ref|YP_002317767.1| general secretion pathway protein D [Acinetobacter baumannii AB0057] gi|215484901|ref|YP_002327140.1| general secretion pathway protein D [Acinetobacter baumannii AB307-0294] gi|301347975|ref|ZP_07228716.1| general secretion pathway protein D [Acinetobacter baumannii AB056] gi|301510797|ref|ZP_07236034.1| general secretion pathway protein D [Acinetobacter baumannii AB058] gi|301596692|ref|ZP_07241700.1| general secretion pathway protein D [Acinetobacter baumannii AB059] gi|332874904|ref|ZP_08442755.1| general secretion pathway protein D [Acinetobacter baumannii 6014059] gi|169150391|emb|CAM88288.1| putative general secretion pathway protein [Acinetobacter baumannii AYE] gi|183208206|gb|ACC55604.1| Type II secretory pathway, component PulD [Acinetobacter baumannii ACICU] gi|213054882|gb|ACJ39784.1| general secretion pathway protein D [Acinetobacter baumannii AB0057] gi|213988659|gb|ACJ58958.1| general secretion pathway protein D [Acinetobacter baumannii AB307-0294] gi|322506499|gb|ADX01953.1| PulD [Acinetobacter baumannii 1656-2] gi|323516378|gb|ADX90759.1| Type II secretory pathway, component PulD [Acinetobacter baumannii TCDC-AB0715] gi|332736847|gb|EGJ67823.1| general secretion pathway protein D [Acinetobacter baumannii 6014059] Length = 758 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 32/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276 + L +F+ ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S + T+V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP +G LFR+ + + + + P +V Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649 >gi|157960066|ref|YP_001500100.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345] gi|157845066|gb|ABV85565.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345] Length = 688 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 121/307 (39%), Gaps = 28/307 (9%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQ 195 + V +L G ++ S+ ++ + + + + + + L+ + Q Sbjct: 381 AKAVDIAALLKGEDSSLLTSR--GSVAVDERTNTLLVKDTEETLENIHRLIEVLDIPIKQ 438 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------- 241 V ++ + V+ D+ + +G + +T S + + G + Sbjct: 439 VLIEARMVTVKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNLP 498 Query: 242 -------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 F V + D + L ALE+ +A P +T S Q A+F G + Sbjct: 499 AAVANPTSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITT-SNQKAAFIEQGVEI 557 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYR 352 +SS+GAT+VT + L TP + R+ L ++ V+ G S Sbjct: 558 PYVEASSSGATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSID 617 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 ++ T V + G TIVL G+ + + +P+L IP LG +FR++ E E+ I Sbjct: 618 TQRIGTQVLVDHGETIVLGGIYQQQLISRVSKVPILGDIPYLGFMFRSTSDKNERQELLI 677 Query: 413 AATPFLV 419 TP +V Sbjct: 678 FVTPKIV 684 >gi|170724709|ref|YP_001758735.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908] gi|169810056|gb|ACA84640.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908] Length = 682 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 105/248 (42%), Gaps = 23/248 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG--SSSGPSKSFAA------------------D 233 QV ++ + V+ D+ + +G + I+ S G S S + Sbjct: 432 RQVLIEARMVTVKDDVSEDLGIKWGISDKQGSKGTSGSIGGAQDIANGIIPSVNDRLNVN 491 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F + F V + D + L ALE+ +A P +T S Q A++ G Sbjct: 492 FPAPEAAASIAFHVAKLADGTILDMELSALEQENKGEIIASPRITT-SNQKAAYIEQGVE 550 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSY 351 + +SS+GA +V+ + L TP + R+ L ++ V+ G++ S Sbjct: 551 IPYVEASSSGAATVSFKKAVLSLRVTPQITPDNRVILDLEISQDSQGKVVATPLGEVVSI 610 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ T V + G TIVL G+ + ++ +P+L IP +G LFR++ E E+ Sbjct: 611 DTQRIGTQVLVDHGETIVLGGIYQQNLISRVSKVPVLGDIPFVGFLFRSTSDKNERQELL 670 Query: 412 IAATPFLV 419 I TP ++ Sbjct: 671 IFVTPKII 678 >gi|153833899|ref|ZP_01986566.1| general secretion pathway protein D [Vibrio harveyi HY01] gi|148869737|gb|EDL68714.1| general secretion pathway protein D [Vibrio harveyi HY01] Length = 681 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 68/459 (14%), Positives = 155/459 (33%), Gaps = 89/459 (19%) Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98 I + + ++ ++ ++ V + ++ S M + + Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKEIEVVELRNASASEMVRIVDALNKTTNQKSTP 220 Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145 ++ +++ D + + L L +A ++ D V Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190 VL G+ +Q ++A + + + A+ ++ V++ L+I Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA------------ 231 QV ++ I E+ +G Q I ++G S Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGNLETGAVIQYGNTGASIGGVMIGLEEAKDSER 399 Query: 232 -------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 D+ + G + + ++ A+ Sbjct: 400 TESTYDPQNPNANPDGYVERKFTEEGDYSTLAAALSGVNGAAMSIVMGDWTALISAVSSD 459 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPT 321 + L+ P++T + ASF G + T ++ +V + G+ L P Sbjct: 460 SNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQ 519 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + Sbjct: 520 INEGDSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALES 578 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +PLL IP++G LF+++ E+ + + P +++ Sbjct: 579 ESKVPLLGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIR 617 >gi|239502032|ref|ZP_04661342.1| general secretion pathway protein D [Acinetobacter baumannii AB900] Length = 758 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 32/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276 + L +F+ ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S + T+V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP +G LFR+ + + + + P +V Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649 >gi|119472772|ref|ZP_01614709.1| General secretion pathway protein D [Alteromonadales bacterium TW-7] gi|119444731|gb|EAW26036.1| General secretion pathway protein D [Alteromonadales bacterium TW-7] Length = 687 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 72/393 (18%), Positives = 129/393 (32%), Gaps = 63/393 (16%) Query: 88 YLFGKNV--GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR------FIADSNIRVE 139 +L K V G+ N +++ +G+ LI+R LE + ++ Sbjct: 231 FLIPKVVADGRTNSVIVSGEGQARTRAIELIKRLDGELESQGNTKVFYLNYAKSEDLVKV 290 Query: 140 MVSDTVVLH----GMVRTIQDSQRAVELSETFLSQS----GRNQYANSSSKKVMNLLNIA 191 + + L G + E + S + V+ L+I Sbjct: 291 LQGVSKTLTEEAQGSATKTRSRSNNETSIEAHPESNSLIITAQPDTMRSLESVIERLDIR 350 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------- 242 QV ++ I EV +G Q + G Sbjct: 351 -RAQVLVEAIIIEVMEGDGVNLGLQWISEQGGMLQFNNGTTVPVGSLAVAAEQAQDTTVT 409 Query: 243 ------------------------------GDFSVKGVLDRFSFETVLHALERATAIRTL 272 G + + + + ++ A+ T L Sbjct: 410 QNIIGTESGNVTPYTETTEGDYGPLASLLSGINGLALGVVKNDWGAIIQAVATDTNSNIL 469 Query: 273 AEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 A P++T + + AS G + ++S +V + G+ L TP + Sbjct: 470 ATPSITTMDNEEASILVGQEVPIITGSQTGTNNSNPFQTVERQEVGIKLIVTPQINDGSA 529 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I+ EVS S R TTV GG +VL GL+ +D+Q+ +PL Sbjct: 530 VQLTIEQEVSSVSGATAVD--ISVNKRAIKTTVIADDGGMVVLGGLIDEDVQESVSKVPL 587 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L IP+LG LFR++ R + + + P +++ Sbjct: 588 LGDIPVLGHLFRSTNTTRRKRNLIVFIRPTIIR 620 >gi|221134989|ref|ZP_03561292.1| general secretion pathway protein D [Glaciecola sp. HTCC2999] Length = 693 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 140/388 (36%), Gaps = 69/388 (17%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV-VLHGMV 151 V+ +++ D+ + + +L + + + S + D V VL G+ Sbjct: 242 VVADDRTNSVIVSGDVKARQRLINLITRMDQELETSGNTRVIFLNYAKADDLVKVLKGVS 301 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS-----------------KKVMNLLNIAGED 194 +IQ ++ + + + R+ ++ ++V+ L++ Sbjct: 302 ESIQAEEKGTSSNSRSKNANTRDVSIDAHEDSNSLVITAEPDMMRSLEEVIRQLDVR-RA 360 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------- 241 QV ++ I EV +G Q + A G V+ Sbjct: 361 QVQVEAIIVEVFEGDGTTLGVQLVSEEGGGTQFTNGVAGVGSLGVALRQAEDREVNRSTT 420 Query: 242 ------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 GG + + + V+ A+ T LA P L Sbjct: 421 AQDGSAVQAIDTIEGDFTALANILGGANGMIAGIIENGWGAVVQAVSTDTNSNILATPHL 480 Query: 278 TAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 T + + A F G + T +S+ +V + G+ L TP + + L I Sbjct: 481 TTMDNEEAFFIVGQEVPIITGTSTGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQLLI 540 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EVS + S R+ TTV + GGTIVL GL+ +D+Q+ +PLL IP Sbjct: 541 EQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGDIP 598 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420 +G LF+ + ++ + + + P +V+ Sbjct: 599 FVGHLFKTTTSSKRKRNLMVFLRPTIVR 626 >gi|34305612|gb|AAQ63613.1| GspD [Ralstonia solanacearum] Length = 709 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235 A QV ++ I EV D Q+G Q + +FG Sbjct: 333 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 392 Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G VS + +L AL ++ L+ P Sbjct: 393 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 452 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G T S + T + D G+ L P + G + Sbjct: 453 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLV 512 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P Sbjct: 513 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 572 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 L IPILGALFR+ R++T + + P++++ A + D+ Y Sbjct: 573 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 618 >gi|241759496|ref|ZP_04757600.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114] gi|241320278|gb|EER56611.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114] Length = 710 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 106/279 (37%), Gaps = 30/279 (10%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSS 223 N+ +K+++ L++ QV ++ I E + +G + GS+ Sbjct: 428 TDNRGVIEKFRKLIDELDVPTR-QVMVEARIVEAEDTFFRNLGVKFGSGGAIGRTAWGSN 486 Query: 224 SGP-------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + + + + ++ + + A E Sbjct: 487 WSNAQTNYKTNASFNRGEVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASE 546 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +T++ P + + A SG + Y+ SS+GATS+T + L TP + Sbjct: 547 EQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEA-SSSGATSITFKKAVLGLTVTPNITP 605 Query: 325 PGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G+I + ++ P V++ + +T + GGT+++ G+ +++ Sbjct: 606 DGQIIMTVKINRDTPIDCTVDSLMTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVN 665 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +P+L IP++G LF++ E+ I TP ++ V Sbjct: 666 KVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNV 704 >gi|229527442|ref|ZP_04416834.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)] gi|229335074|gb|EEO00559.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)] gi|327485110|gb|AEA79517.1| Type IV pilus biogenesis protein PilQ [Vibrio cholerae LMA3894-4] Length = 571 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 70/419 (16%), Positives = 142/419 (33%), Gaps = 43/419 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86 + I ++ ++ ++ + V Q VL V R Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 + G + +I + + R L I + + ++ + Sbjct: 219 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + T + ++++ L+I + QV ++ I V+ Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPNNIAVIREIIESLDIPVK-QVQIEARIVTVK 331 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242 L+++G + + ++ S + + Sbjct: 332 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 391 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F V + + L AL+ + ++ P L + Q A G + Y SS+ Sbjct: 392 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 450 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360 GA++V + L TP + R+ L + + G+ S ++ T V Sbjct: 451 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569 >gi|312972414|ref|ZP_07786588.1| general secretion pathway protein D [Escherichia coli 1827-70] gi|310334791|gb|EFQ00996.1| general secretion pathway protein D [Escherichia coli 1827-70] Length = 650 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 60/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249 +G Q + + + G S + Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ +PL IP++G LFR + R + + + P +++ Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLPGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595 >gi|227112152|ref|ZP_03825808.1| putative outer membrane porin HofQ [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 420 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 6/231 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251 QV L I + + L+ +G + S+ +F + + L Sbjct: 186 QVQLAAHIVTISSEHLQALGVNWGLGEGSAANKALRLNNFNVGLPVDTPAINAGFHLARL 245 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + Sbjct: 246 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 305 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368 + + TP +L GRI L ++ + P + + G+ + ++ T V + G TI Sbjct: 306 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 365 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + +P+L ++P+ G LFRN E+ I TP L+ Sbjct: 366 VLGGIFQQQKKNSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 416 >gi|91785421|ref|YP_560627.1| putative fimbrial type-4 assembly signal peptide, PilQ-like [Burkholderia xenovorans LB400] gi|91689375|gb|ABE32575.1| Putative fimbrial type-4 assembly signal peptide, PilQ-like protein [Burkholderia xenovorans LB400] Length = 567 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 79/454 (17%), Positives = 155/454 (34%), Gaps = 46/454 (10%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59 +R + + LPP+ + A ++ +D + K +S+ + + Sbjct: 124 LRRQSAAAARDNAAGSSALEGPPVPLPPLARLSGAPLSAADAGLAPDDKPLSLNFQRAEL 183 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV-ILIGHDGKQM-LNLDILIE 117 V A V ++ L K + L+ +G M + +++ Sbjct: 184 GAVLNAFAR-FTGLNIVASERVRGAVSLRLD-KVPWRTAFDTLLDVNGLAMERHGNVIWV 241 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSG 172 IA L R+ E + L + + ++ L +Q Sbjct: 242 APIADLAARERQRF-------EAHARAADLEPLASRTFELHYAHAEDVRRLLTGSGAQRV 294 Query: 173 RNQYANSSSKKVMNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIG 214 ++ +++ NLL + QV ++ I E + +G Sbjct: 295 LSKRGAATADPRTNLLFVTDLEARLAQIAALLTSVDRPTRQVLIEARIVEGEHGFSRNLG 354 Query: 215 FQHSITGSSSGPSKSFAADFG--------GKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + S+ S++ S D F + ++ L ALE Sbjct: 355 VKLSMATSNADGSAKGLTDAAYDLSARPIAGFDAATAGLTLFAAGATRLLNIELSALEAQ 414 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 ++ P + A G + Y+ G + V + L P ++ G Sbjct: 415 GRGEIVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQIMPDG 473 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 R+ L + +V++ +G P+ + T VE+ GGT+ + G+ D + +P Sbjct: 474 RVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVEDGGTVSIGGIYATDDRDDVTQVP 531 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 LL KIP+LGALFR+ +E+ + TP +V+ Sbjct: 532 LLGKIPVLGALFRHRAHRDRRSELAVFITPRVVQ 565 >gi|269140603|ref|YP_003297304.1| Type II secretory pathway, component HofQ [Edwardsiella tarda EIB202] gi|267986264|gb|ACY86093.1| Type II secretory pathway, component HofQ [Edwardsiella tarda EIB202] gi|304560390|gb|ADM43054.1| Type IV pilus biogenesis protein PilQ [Edwardsiella tarda FL6-60] Length = 409 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 74/422 (17%), Positives = 143/422 (33%), Gaps = 26/422 (6%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGL-----NKVIILQVPVDVQDV 69 L + + + +P + A + + + +++ L + + V Sbjct: 1 MLLAMSSAGQAMPLTLWFDRAPLPSVLQAVAEFAGLNLILSEEVRGEATLHIAHTPWPRV 60 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 L + D+ V + L + +L + + LR Sbjct: 61 LDALAEIYDLSVVRRDGILLIQ------SRARAARQAGPAAAPALLKPPQMRSQRVVLR- 113 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + + L + ++ AV T ++ + + L+ Sbjct: 114 -------HADAATVEKSLRQRRDLLGEAGSAVADIRTNALLLRAEAARLAALRDWIAQLD 166 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + QV L I + ++ L+++G + SG F + Sbjct: 167 VPLS-QVQLAAHIVSISQEGLRELGIRWYSGDERSGGQDRLRGAADAYFSAG----FQVA 221 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + + L ALER + +A P L A GQ+AS G + Y G +++ Sbjct: 222 RIGGQTLAVALAALERQDKVAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGVSTMEF 281 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367 + + + TP VL+ I L +Q + P V+ + + ++ T V L G T Sbjct: 282 KEAVLGMSVTPRVLADAHIELALQISQNMPGRVVRQGDSEALAIDKQEITTQVTLSDGDT 341 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +L G+ + Q G P L+ +P+LG L R+ E+ I TP L+ P + Sbjct: 342 AMLGGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSPASPAPQ 401 Query: 428 SR 429 S Sbjct: 402 SL 403 >gi|254373092|ref|ZP_04988581.1| hypothetical protein FTCG_00669 [Francisella tularensis subsp. novicida GA99-3549] gi|151570819|gb|EDN36473.1| hypothetical protein FTCG_00669 [Francisella novicida GA99-3549] Length = 593 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 72/418 (17%), Positives = 154/418 (36%), Gaps = 36/418 (8%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84 P A + + + +++ ++ + + +D+++V P ++V+ S Sbjct: 181 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 236 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 L K + + + L++ +R + + + FI + + Sbjct: 237 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 293 Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + +G + + + S A + T + K+V+N ++I DQV ++ Sbjct: 294 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 350 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--------------EGGDFS 246 I EV R ++GF + + S + + Sbjct: 351 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPTPTPVDTFVGTTAKL 410 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + V + + ALE + +A P L + Q A F G+ + ++++GA + Sbjct: 411 MYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAA 469 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVE 361 V + + L TP + G I + I + P + R+ T V Sbjct: 470 VAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVM 529 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++ Sbjct: 530 TKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 587 >gi|238899270|ref|YP_002924953.1| putative transport protein, possibly in biosynthesis of type IV pilin [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467031|gb|ACQ68805.1| putative transport protein, possibly in biosynthesis of type IV pilin [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 419 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 5/230 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-AADFGGKFVSEGGDFSV-KGVL 251 Q+ L I + + L ++G + + G + + + + Sbjct: 190 RQIELSAHIVTMSSENLYELGIRWGMNALEKGNPLGIKNFNINLPLKNTAIAANFQVASI 249 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + L ALE+ + +A P L Q+AS G Y+ ++ S+ + Sbjct: 250 NSRLLDLELSALEQENQVDIIASPRLITSHQQTASIKQGTDIPYQ-INGKKENVSIEFKE 308 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIV 369 + + TPT+L +I L+++ + P + + + + ++ T + + G TIV Sbjct: 309 AVLGMEVTPTILGNDKIRLKLKISQNMPGMAIKRGNAETLAIDKQEITTQIIVKHGETIV 368 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + + +P IP LGALFR + E+ I TP L+ Sbjct: 369 LGGIFQKKNNHRIDKVPGFGNIPFLGALFRQDVNQQRRRELVIFITPKLI 418 >gi|229220650|ref|YP_052181.2| putative outer membrane porin HofQ [Pectobacterium atrosepticum SCRI1043] Length = 383 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 6/231 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251 QV L I + + L+ +G + + +F + + L Sbjct: 149 QVQLAAHIVTISSEHLQALGVNWGLGEGDAANKALRLNNFNVGLPVDMPAINAGFHLARL 208 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + Sbjct: 209 NGRLLDLELMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 268 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368 + + TP +L GRI L ++ + P + + G+ + ++ T V + G TI Sbjct: 269 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 328 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + +P+LS+IP+ G LFRN E+ I TP L+ Sbjct: 329 VLGGIFQQQKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 379 >gi|313501056|gb|ADR62422.1| PilQ [Pseudomonas putida BIRD-1] Length = 384 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 95/236 (40%), Gaps = 2/236 (0%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ L++ QV ++ I E D K +G + G Sbjct: 141 QLVAQLDVPVR-QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGLERAG 199 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + + + L A+E++ +++P + ++A G + Y+ S S Sbjct: 200 SSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQS- 258 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 GATSV+ + + L TP + ++ + ++ EP ++P R + + V + Sbjct: 259 GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNAKVRV 318 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 G TIV+ G+ + + +P +P +G LFR +++E+ + TP + Sbjct: 319 ADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 374 >gi|49613540|emb|CAG76991.1| putative type II secretion system protein [Pectobacterium atrosepticum SCRI1043] Length = 393 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 6/231 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251 QV L I + + L+ +G + + +F + + L Sbjct: 159 QVQLAAHIVTISSEHLQALGVNWGLGEGDAANKALRLNNFNVGLPVDMPAINAGFHLARL 218 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + Sbjct: 219 NGRLLDLELMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 278 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368 + + TP +L GRI L ++ + P + + G+ + ++ T V + G TI Sbjct: 279 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 338 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + +P+LS+IP+ G LFRN E+ I TP L+ Sbjct: 339 VLGGIFQQQKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 389 >gi|242238911|ref|YP_002987092.1| general secretion pathway protein D [Dickeya dadantii Ech703] gi|242130968|gb|ACS85270.1| general secretion pathway protein D [Dickeya dadantii Ech703] Length = 714 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 62/301 (20%), Positives = 116/301 (38%), Gaps = 31/301 (10%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 T+++ G ++ + L T R+ ++V+N L+I QV ++ IA Sbjct: 361 TIIIQGKEVIMRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLVEAIIA 413 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKFVSEGGDF-S 246 EV+ +G Q + + + F S G F Sbjct: 414 EVQDADGLNLGIQWANKRAGMTQYTNTGMPISTAIVGVDQYRDDGTLTSNFSSALGSFNG 473 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303 + ++ +L AL + LA P++ I A+F G + T S +T Sbjct: 474 IAAGFYHGNWSMLLTALSSNSKNDVLATPSIVTIDNMEATFNVGQEVPVLTGSQTTSADN 533 Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTT 359 ++V G+ L P + + L+I+ EVS ++ ++ R + Sbjct: 534 IYSTVERKTVGIKLKVKPQINEGDSVLLQIEQEVSSVADSSSSTSSDLGATFNTRTVNNA 593 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + +G T+V+ GLL + +PLL IP+LG LFR+ + + + P ++ Sbjct: 594 VMVTNGETVVVGGLLNKSTVETDSKVPLLGDIPVLGNLFRSKSLTVSKRNLMLFLRPTII 653 Query: 420 K 420 + Sbjct: 654 R 654 >gi|238764794|ref|ZP_04625736.1| General secretion pathway protein D [Yersinia kristensenii ATCC 33638] gi|238696992|gb|EEP89767.1| General secretion pathway protein D [Yersinia kristensenii ATCC 33638] Length = 635 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 98/253 (38%), Gaps = 12/253 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----ADFGGK 237 +V+ L++ QV ++ I E + +G + + A+ + Sbjct: 326 DQVIEKLDVR-RAQVLVEAIIVETQNGEGLNLGIKWANKFHGGVNFLQNPDRIRANNNSE 384 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + +++ + AL + LA P++ + A F G + T Sbjct: 385 NPIPTVISGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 444 Query: 298 VSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---S 350 + +T S++ GV+L P + + L I+ EVS Sbjct: 445 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSGTNANNLGSV 504 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+V+ GLL + ++ +P L IP++G LF+ + N E++ + Sbjct: 505 FNKRVVNNAVLVKSGETVVVGGLLDKKLSKVINKVPFLGDIPLIGRLFQQRKENIEKSNL 564 Query: 411 FIAATPFLVKPVA 423 + P +++ Sbjct: 565 ILFIRPTILRETN 577 >gi|50122032|ref|YP_051199.1| general secretion pathway protein D [Pectobacterium atrosepticum SCRI1043] gi|49612558|emb|CAG76008.1| general secretion pathway protein D [Pectobacterium atrosepticum SCRI1043] Length = 650 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 67/367 (18%), Positives = 130/367 (35%), Gaps = 43/367 (11%) Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLH 148 ANV+ ++ + + + + L R+ N +V +D V VL Sbjct: 219 TANVVADERTNSVLVRGEPNSRQRVIDMIKQLDRQQAVQGNTKVIYLKYAKATDLVEVLT 278 Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 G+ +IQ Q+ + +T ++V+ L+I QV Sbjct: 279 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 337 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240 ++ IAEV+ +G Q + + + + Sbjct: 338 VEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATSA 397 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296 G + + ++ ++ AL + LA P++ + A+F G + + Sbjct: 398 LGSFNGIAAGFYQGNWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 457 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRV 353 T S +V G+ L P + + L I+ EVS + ++ Sbjct: 458 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGATFNT 517 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R + V + SG T+V+ GLL + +P L IPILG LFR++ ++ + + Sbjct: 518 RTVNNAVLVSSGETVVVGGLLDKSTNESASKVPFLGDIPILGHLFRSNSQETKKRNLMLF 577 Query: 414 ATPFLVK 420 P +++ Sbjct: 578 IRPSIIR 584 >gi|300702677|ref|YP_003744277.1| general secretory pathway protein d, type II secretion system [Ralstonia solanacearum CFBP2957] gi|299070338|emb|CBJ41633.1| General Secretory Pathway protein D, type II secretion system [Ralstonia solanacearum CFBP2957] Length = 809 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235 A QV ++ I EV D Q+G Q + +FG Sbjct: 433 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 492 Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G VS + +L AL ++ L+ P Sbjct: 493 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 552 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G T S + T + D G+ L P + G + Sbjct: 553 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGLV 612 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P Sbjct: 613 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 672 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 L IPILGALFR+ R++T + + P++++ A + D+ Y Sbjct: 673 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 718 >gi|293610078|ref|ZP_06692379.1| predicted protein [Acinetobacter sp. SH024] gi|292827310|gb|EFF85674.1| predicted protein [Acinetobacter sp. SH024] Length = 758 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 101/269 (37%), Gaps = 32/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 242 GGDF------------------SVKGVLDRFSF-------ETVLHALERATAIRTLAEPT 276 + L +F ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGSAGAASAIAGGANKGNGATLALGNFENSRKAYGALIQALKTNTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S + T+V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP +G LFR+ + + + + P +V Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649 >gi|255067346|ref|ZP_05319201.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256] gi|255048497|gb|EET43961.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256] Length = 711 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 120/316 (37%), Gaps = 37/316 (11%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 + N +L G + D + N+ +K+++ L++ Sbjct: 397 EDNGSSNSNGRNTLLSGRGSALIDPATNTLIV-------TDNRNVIEKFRKLIDELDVPT 449 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS---------------------------ITGSSSG 225 QV ++ I E + + +G + G S+ Sbjct: 450 R-QVMVEARIVEAKDGFSRDLGVKFGAAGARGRNSWGNDWSAAQNNHNTNASVFRGESAY 508 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 P+ S + + ++ L + + A E +T++ P + + A Sbjct: 509 PTWSLQPNVSLPATAATNSIALVRALSSGALGLEISASEATGKSKTISNPRVLTQDRREA 568 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVN 344 + SG + Y+ SS+GATSV+ + L TP V G+I + ++ PV V+ Sbjct: 569 TIESGTEIPYQEA-SSSGATSVSFKKAVLGLTVTPNVTPDGQIIMTVKITKDTPVDCTVD 627 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 + + + +T + GGT+++ G+ ++D +PLL IP++G LF++ Sbjct: 628 SLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDNSDTINKVPLLGDIPVVGNLFKSRAKK 687 Query: 405 REETEIFIAATPFLVK 420 E E+ I TP ++ Sbjct: 688 EERRELLIFITPRIMD 703 >gi|126176299|ref|YP_001052448.1| type IV pilus secretin PilQ [Shewanella baltica OS155] gi|125999504|gb|ABN63579.1| type IV pilus secretin PilQ [Shewanella baltica OS155] Length = 683 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 49/311 (15%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 ++ V+ ++TV++ TI++ R VE+ + + I Sbjct: 395 PRGSVAVDERTNTVLVKDTAETIENIHRLVEVLD----------------------IPIR 432 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------------- 231 QV ++ + V+ D+ + +G + +T S Sbjct: 433 ---QVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGIIPTADQRLN 489 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 F V + D + L ALE+ +A P +T S Q A++ Sbjct: 490 VNLPSAASNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQ 548 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G + S+S+GATSVT + L TP + R+ L ++ V+ P+ Sbjct: 549 GVEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPA 608 Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ T V + +G TIVL G+ + ++ +P+L IP++G LFRN+ E Sbjct: 609 VAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQ 668 Query: 409 EIFIAATPFLV 419 E+ I TP +V Sbjct: 669 ELLIFVTPKIV 679 >gi|54302290|ref|YP_132283.1| Flp pilus assembly protein [Photobacterium profundum SS9] gi|46915712|emb|CAG22483.1| hypothetical Flp pilus assembly protein [Photobacterium profundum SS9] Length = 296 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 29/261 (11%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 ++V + + IS+ NK ++++P + + V +P AD+++ +Y+ GK G N Sbjct: 27 STNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTN 86 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 VI+ + + LD+ + D+ L+ L F+ + I V + +VL G V + Sbjct: 87 VIIWDSRDQLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIA 146 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 AVE++ TF ++ +++NL+ + G QV L+VT+AEV+R ++++ + Sbjct: 147 TAVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKFV 195 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG------------------GDFSVKGVLDRFSFETVL 260 S + A + G + F Sbjct: 196 FAHQSGNWTWGGANGGASVPSNVGIIDPIIDAAISNPLSIDDNGLFASFLSSNTLFAAAF 255 Query: 261 HALERATAIRTLAEPTLTAIS 281 + + LAEPTLTAIS Sbjct: 256 DIAKTNGLAKVLAEPTLTAIS 276 >gi|120600633|ref|YP_965207.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1] gi|146294790|ref|YP_001185214.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32] gi|120560726|gb|ABM26653.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1] gi|145566480|gb|ABP77415.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32] Length = 683 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 25/261 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229 +++ +L+I QV ++ + V+ ++ + +G + IT S Sbjct: 422 RLVEVLDIPIR-QVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGI 480 Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + S F V + D + L ALE+ +A P +T S Sbjct: 481 VPSIGDRLNVNLPAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-S 539 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 Q A++ G + S+S+GATSVT + L TP + R+ L ++ Sbjct: 540 NQKAAYIEQGIEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGK 599 Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR Sbjct: 600 TVPTSTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 659 Query: 400 NSRFNREETEIFIAATPFLVK 420 N+ E E+ I TP +V Sbjct: 660 NTTDKNERQELLIFVTPKIVD 680 >gi|127511146|ref|YP_001092343.1| type IV pilus secretin PilQ [Shewanella loihica PV-4] gi|126636441|gb|ABO22084.1| type IV pilus secretin PilQ [Shewanella loihica PV-4] Length = 683 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 63/298 (21%), Positives = 119/298 (39%), Gaps = 26/298 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204 +L G ++ ++ V + + + ++ + + +++ +L+I QV ++ + Sbjct: 384 LLKGDDASLLSARGTVAVDDRTNTLLVKDTEESLENIHRLVEVLDIPIR-QVLIESRMVT 442 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFA---------------------ADFGGKFVSEGG 243 V+ D+ + +G + IT S + Sbjct: 443 VKDDVSEDLGIKWGITDQQGSKGTSGSLEGANDIANGVVPDIGDRLNVNLPAAVANPTSI 502 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F V + D + L ALE+ + +A P +T S Q A++ G + S+S+G Sbjct: 503 AFHVAKLADGTLLDLELSALEQESKGEIIASPRITT-SNQKAAYIEQGVEIPYVESASSG 561 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVE 361 A +V + L TP + R+ L ++ V+ G S ++ T V Sbjct: 562 AATVQFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPLGQAVSIDTQRIGTQVL 621 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G TIVL G+ + + +P+L IP LG LFRN+ E E+ I TP ++ Sbjct: 622 VDHGETIVLGGIYQQQLINRVSKVPVLGDIPFLGYLFRNTTDKNERQELLIFVTPKII 679 >gi|37678398|ref|NP_933007.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016] gi|37197137|dbj|BAC92978.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016] Length = 672 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 55/318 (17%), Positives = 109/318 (34%), Gaps = 47/318 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEV 205 G V + + + + + V+ L+I QV ++ I E+ Sbjct: 295 SGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQDVITQLDIR-RAQVLIEALIVEM 353 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGG----------------------------- 236 +G Q + + S G Sbjct: 354 AEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDQTKTEYYTNKDGDRVPYQ 413 Query: 237 ---------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 + G L + ++ A+ + L+ P++T + ASF Sbjct: 414 VTESGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASF 473 Query: 288 TSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G + T ++ +V + G+ L P + + L I+ EVS + Sbjct: 474 IVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGA 533 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 A D+ + R+ +T+V + G +VL GL+ + + + +PLL IPILG LF+++ Sbjct: 534 NGAVDV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTN 592 Query: 403 FNREETEIFIAATPFLVK 420 E+ + + P +++ Sbjct: 593 TQVEKKNLMVFIKPTIIR 610 >gi|126640364|ref|YP_001083348.1| putative general secretion pathway protein [Acinetobacter baumannii ATCC 17978] Length = 667 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 32/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 291 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 349 Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276 + L +F+ ++ AL+ T L+ P+ Sbjct: 350 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 409 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S + T+V D GV L P + G + L Sbjct: 410 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 469 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 470 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 529 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP +G LFR+ + + + + P +V Sbjct: 530 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 558 >gi|121634273|ref|YP_974518.1| pilus secretin [Neisseria meningitidis FAM18] gi|120865979|emb|CAM09716.1| pilus secretin [Neisseria meningitidis FAM18] Length = 589 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGG 236 K+++ L++ QV ++ I E + +G + TG +S + FGG Sbjct: 324 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 382 Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + S+ + + L A E + +TLA P + + + Sbjct: 383 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 442 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 443 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 502 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 503 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 562 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 563 GKKTDRRELLIFITPRI 579 >gi|253689235|ref|YP_003018425.1| general secretion pathway protein D [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755813|gb|ACT13889.1| general secretion pathway protein D [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 640 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 68/367 (18%), Positives = 132/367 (35%), Gaps = 43/367 (11%) Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLH 148 ANV+ ++ + + + + L R+ N +V +D V VL Sbjct: 209 TANVVADERTNSVLVRGEPNSRQRVIDMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLT 268 Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 G+ +IQ Q+ + +T ++V+ L+I QV Sbjct: 269 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 327 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240 ++ IAEV+ +G Q + + + + Sbjct: 328 VEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATTA 387 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296 GG + + ++ ++ AL + LA P++ + A+F G + + Sbjct: 388 LGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 447 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRV 353 T S +V G+ L P + + L I+ EVS + ++ Sbjct: 448 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGATFNT 507 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + + Sbjct: 508 RTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSQETKKRNLMLF 567 Query: 414 ATPFLVK 420 P +++ Sbjct: 568 IRPSIIR 574 >gi|319428303|gb|ADV56377.1| type IV pilus secretin PilQ [Shewanella putrefaciens 200] Length = 683 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 25/261 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229 +++ +L+I QV ++ + V+ ++ + +G + IT S Sbjct: 422 RLVEVLDIPIR-QVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGI 480 Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + S F V + D + L ALE+ +A P +T S Sbjct: 481 VPSIGDRLNVNLPAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-S 539 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 Q A++ G + S+S+GATSVT + L TP + R+ L ++ Sbjct: 540 NQKAAYIEQGIEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGK 599 Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR Sbjct: 600 TVPTSTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 659 Query: 400 NSRFNREETEIFIAATPFLVK 420 N+ E E+ I TP +V Sbjct: 660 NTTDKNERQELLIFVTPKIVD 680 >gi|332305113|ref|YP_004432964.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172442|gb|AEE21696.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5] Length = 580 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 71/351 (20%), Positives = 141/351 (40%), Gaps = 27/351 (7%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + G +I + + + +A L + + + + + V+ +L Sbjct: 227 RLEGNILLIAPSEELASRETQQLQNRQQVAQLAPLISANLQINYAKAKEVAG--ILKNTD 284 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYAN-SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 +I + +V + E + R+ A+ ++K+++ L+I + QV ++ + VR + Sbjct: 285 NSILSPRGSVAVDERTNTVLLRDTQASIDEARKLISALDIPVK-QVLIESRMVTVRDNAG 343 Query: 211 KQIGFQHSITGSSSGPSKS--------------------FAADFGGKFVSEGGDFSVKGV 250 +Q+G + + +S + S + + V + Sbjct: 344 EQLGVRWGFSNNSGDTATSGTIEGADTLSSGVVPSIDNRLNVNLPVTSPAGSIGIQVARL 403 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +D + L ALE +A P +T + + A G + Y +SS GATSV Sbjct: 404 VDGTILDLELSALESENKGEVIASPRITVANQREAYIEQGTEIPYVQSTSS-GATSVEFK 462 Query: 311 DYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + L TP + RI L + + + + G + ++ T V + +G TI Sbjct: 463 KAVLSLKVTPHITPDHRIILDLVVTQDTRGDTVNTSTGLAVAIDTQEISTQVLVNNGETI 522 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + +PLL IP+LG LF+N++ E+ E+ I TP ++ Sbjct: 523 VLGGIFQQTSTDDVSQVPLLGDIPVLGHLFKNTQTVNEKRELLIFVTPKIL 573 >gi|42186|emb|CAA49645.1| outD [Pectobacterium carotovorum] Length = 649 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 101/263 (38%), Gaps = 25/263 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 ++V+ L+I QV ++ IAEV+ +G Q + + + Sbjct: 322 EQVIAQLDIRRP-QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGA 380 Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + GG + + ++ ++ AL + LA P++ + Sbjct: 381 DQFRRDGTLGTAATTALGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNME 440 Query: 285 ASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 A+F G + +T S +V G+ L P + + L I+ EVS Sbjct: 441 ATFNVGQEVPVLAGSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVA 500 Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + ++ R + V + SG T+V+ GLL + +PLL IP+LG L Sbjct: 501 DAASSSSTNLGATFNTRTVNNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYL 560 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 FR++ ++ + + P +++ Sbjct: 561 FRSNSTETKKRNLMLFIRPSIIR 583 >gi|262170336|ref|ZP_06038014.1| type II secretory pathway component PulD [Vibrio mimicus MB-451] gi|261891412|gb|EEY37398.1| type II secretory pathway component PulD [Vibrio mimicus MB-451] Length = 675 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 50/321 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204 G + + V ++ + S +V+ L+I QV ++ I E Sbjct: 294 KGTGQQTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352 Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231 + +G Q I ++G S Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKRPIRDSNTGAIKY 412 Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D+ + G + + +++A+ + L+ P++T + Sbjct: 413 YEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGE 472 Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 ASF G + T ++ +V + G+ L P + + L I+ EVS Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591 Query: 400 NSRFNREETEIFIAATPFLVK 420 ++ E+ + + P +++ Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612 >gi|24371883|ref|NP_715925.1| type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1] gi|24345706|gb|AAN53370.1|AE015476_11 type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1] Length = 684 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 125/298 (41%), Gaps = 26/298 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204 +L G ++ + +V + E + ++ + +++ +L+I QV ++ + Sbjct: 385 LLKGADSSLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIR-QVLIESRMVT 443 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------------GG 243 V+ D+ + +G + +T S + + G + Sbjct: 444 VKDDVSEDLGIRWGVTDQQGNKGTSGSLEGAGDIANGKVPSLDNRLNVNLPAAVTNPTSI 503 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F V + D + L ALE+ +A P +T S Q A++ G + S+S+G Sbjct: 504 AFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSG 562 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361 ATSVT + L TP + R+ L ++ V+ P+ ++ T V Sbjct: 563 ATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVL 622 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V Sbjct: 623 VDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680 >gi|261211295|ref|ZP_05925584.1| type II secretory pathway component PulD [Vibrio sp. RC341] gi|260839796|gb|EEX66407.1| type II secretory pathway component PulD [Vibrio sp. RC341] Length = 675 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 116/321 (36%), Gaps = 50/321 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKVTIAE 204 G + + V ++ + S + +V+ L+I QV ++ I E Sbjct: 294 KGTGQQTTSKRNEVMIAAHSDTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352 Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231 + +G Q I ++G S Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKKPIRNSDTGEIKY 412 Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D+ + G + + ++ A+ + L+ P++T + Sbjct: 413 YEETTTKGDYSTLASALSGLQGAAVSIALGDWTALISAVSNDSKSNILSSPSITVMDNGE 472 Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 ASF G + T ++ +V + G+ L P + + L+I+ EVS Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSNV 532 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591 Query: 400 NSRFNREETEIFIAATPFLVK 420 ++ E+ + + P +++ Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612 >gi|114045758|ref|YP_736308.1| type IV pilus secretin PilQ [Shewanella sp. MR-7] gi|113887200|gb|ABI41251.1| type IV pilus secretin PilQ [Shewanella sp. MR-7] Length = 684 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 26/298 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204 +L G ++ + +V + E + ++ + +++ +L+I QV ++ + Sbjct: 385 LLKGADSSLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIR-QVLIESRMVT 443 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------------------G 243 V+ D+ + +G + +T S + G + Sbjct: 444 VKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIATGTVPSLDNRLNVNLPAAVTNPTSI 503 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F V + D + L ALE+ +A P +T S Q A++ G + S+S+G Sbjct: 504 AFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSG 562 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361 ATSVT + L TP + R+ L ++ V+ P+ ++ T V Sbjct: 563 ATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVL 622 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V Sbjct: 623 VDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680 >gi|258620393|ref|ZP_05715431.1| general secretion pathway protein D [Vibrio mimicus VM573] gi|258624627|ref|ZP_05719563.1| general secretion pathway protein D [Vibrio mimicus VM603] gi|258583091|gb|EEW07904.1| general secretion pathway protein D [Vibrio mimicus VM603] gi|258587272|gb|EEW11983.1| general secretion pathway protein D [Vibrio mimicus VM573] Length = 675 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 50/321 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204 G + + V ++ + S +V+ L+I QV ++ I E Sbjct: 294 KGTGQQTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352 Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231 + +G Q I ++G S Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGIEEAKDTTEKRPIRDSNTGAIKY 412 Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D+ + G + + +++A+ + L+ P++T + Sbjct: 413 YEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGE 472 Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 ASF G + T ++ +V + G+ L P + + L I+ EVS Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591 Query: 400 NSRFNREETEIFIAATPFLVK 420 ++ E+ + + P +++ Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612 >gi|238787297|ref|ZP_04631096.1| General secretion pathway protein D [Yersinia frederiksenii ATCC 33641] gi|238724559|gb|EEQ16200.1| General secretion pathway protein D [Yersinia frederiksenii ATCC 33641] Length = 657 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 107/282 (37%), Gaps = 18/282 (6%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 +I+ + L T + + +V+ L+I QV ++ I E + Sbjct: 325 SIKAHDQTNSLVITAAPKIMKEL------DQVIEKLDIR-RAQVLVEAIIVETQNGEGLN 377 Query: 213 IGFQHSITGSSSGPSKSFAAD----FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 +G Q + G + + + + +++ + AL Sbjct: 378 LGVQWANKFHGGVNFLQNPESVKNKNGSENIVPKLITGLTAGFYKGNWDGLFTALATNLN 437 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 LA P++ + A F G + +T ++ S++ GV+L P + Sbjct: 438 NNILATPSIVTLDNMEAEFNVGQEVPILTSTQTTTTDKVYNSISRQSVGVMLKVKPQINK 497 Query: 325 PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + L I+ EVS + + R + V + SG T+V+ GLL + + Sbjct: 498 GDSVLLEIRQEVSSVADSSDINTHNLGSVFNKRIVNNAVLVKSGETVVVGGLLDKKVNKT 557 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +PLL IP +GALFR S+ E++ + + P +++ + Sbjct: 558 INKVPLLGDIPFIGALFRQSKEKVEKSNLILFIKPTILRETS 599 >gi|313200821|ref|YP_004039479.1| type II and iii secretion system protein [Methylovorus sp. MP688] gi|312440137|gb|ADQ84243.1| type II and III secretion system protein [Methylovorus sp. MP688] Length = 671 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 79/468 (16%), Positives = 168/468 (35%), Gaps = 63/468 (13%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 P E A I + + + I+ L+K I V + + D + T Sbjct: 181 PVSLEFRDANIKMVFEALSRATGINFILDKDIRADAK---ATVYIRKASIEDAIEMVLAT 237 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLD-------ILIERDIAHLEMTLRRFIADSNIRVE 139 L K + + + ++ + +++ + L + TL+ + ++ V+ Sbjct: 238 NGLQKKALTETSALIFPNTPQKVKDYKELMIRSFYLTNASAKQVASTLKTVLKTKDVVVD 297 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + +V+ + ++E ++ + + +V L+ Sbjct: 298 ERLNMIVMRDTP-------EVIHIAEKLVAANDL------------------ADPEVMLE 332 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------GDFSVK 248 + + E+ R L+++G + S + + G G ++ Sbjct: 333 IEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDSPLTLEGLLNLN 392 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---AT 305 S ++ + + ++ P + + + A G + T +S+ + Sbjct: 393 SSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIITTTSTANVGISE 452 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVEL 362 +VT D G+ L P + + ++I EVS + N + + R A T + L Sbjct: 453 NVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTIGTRNASTLLRL 512 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G +LAGL++D+ ++ +P L IPILG LF N + +TEI +A TP ++ Sbjct: 513 KDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIVLAITPRIL--- 569 Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 ++ RPD + ++ N I + + G A G Sbjct: 570 --GNIRRPD------AEISEYWSGTENGISDKPQLAAPAGGGSPAASG 609 >gi|241767965|ref|ZP_04765503.1| type II and III secretion system protein [Acidovorax delafieldii 2AN] gi|241360839|gb|EER57693.1| type II and III secretion system protein [Acidovorax delafieldii 2AN] Length = 381 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 102/272 (37%), Gaps = 36/272 (13%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ I EV + L + G Q S G A G+ Sbjct: 86 GRRAQVLVESLIVEVSTNKLAEFGIQWQSVLGSKGDGMVGAIGTNSGLAGANIIGLAAGI 145 Query: 251 --------------------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 ++ + + L+ + L+ P L + + Sbjct: 146 AQGGTAAATAAGKLGGGLNVALAPRVNGQYYLGALANFLQNSGDANVLSTPNLMTLDNEE 205 Query: 285 ASFTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 A G + T S + T+V D G++L P + G + L I E Sbjct: 206 AKIIIGSNVPFVTGSYANTGGNSGAVNPFTTVERKDVGLMLKVRPQINENGTVKLAIYQE 265 Query: 336 VSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VS+ V+ + P+ R ++ V + G IV+ GLL+D Q ++ +PL+ IP+L Sbjct: 266 VSKIDEATVSNANGPTTSKRSIESNVLVEDGNIIVIGGLLEDSYSQGEDKVPLMGDIPLL 325 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 G LFR+ +R++T + + P +V+ A D Sbjct: 326 GNLFRSENRSRKKTNLMVFLRPVVVRDAAASD 357 >gi|208811320|ref|ZP_03253080.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4206] gi|208817430|ref|ZP_03258459.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4045] gi|208823379|ref|ZP_03263696.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4042] gi|209395621|ref|YP_002268498.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4115] gi|217329885|ref|ZP_03445960.1| general secretion pathway protein D [Escherichia coli O157:H7 str. TW14588] gi|208729950|gb|EDZ79167.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4206] gi|208730607|gb|EDZ79306.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4045] gi|208736974|gb|EDZ84659.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4042] gi|209157076|gb|ACI34510.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4115] gi|217317116|gb|EEC25549.1| general secretion pathway protein D [Escherichia coli O157:H7 str. TW14588] Length = 655 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 21/269 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + V++ L+I QV ++ IAE++ +G Q + S Sbjct: 324 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 382 Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + + + ++ +L AL ++ LA P++ Sbjct: 383 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 442 Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + A+F G + + S +T +V G+ L P + + L I+ Sbjct: 443 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 502 Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS + + ++ R + + +G T+V+ GLL I+ + +PLL I Sbjct: 503 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDI 562 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P+LG LFR + + + P +++ Sbjct: 563 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 591 >gi|113972026|ref|YP_735819.1| type IV pilus secretin PilQ [Shewanella sp. MR-4] gi|113886710|gb|ABI40762.1| type IV pilus secretin PilQ [Shewanella sp. MR-4] Length = 684 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 26/298 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204 +L G ++ + +V + E + ++ + +++ +L+I QV ++ + Sbjct: 385 LLKGADSSLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIR-QVLIESRMVT 443 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------------------G 243 V+ D+ + +G + +T S + G + Sbjct: 444 VKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIANGTVPTLDNRLNVNLPAAVTNPTSI 503 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F V + D + L ALE+ +A P +T S Q A++ G + S+S+G Sbjct: 504 AFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSG 562 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361 ATSVT + L TP + R+ L ++ V+ P+ ++ T V Sbjct: 563 ATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVL 622 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V Sbjct: 623 VDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680 >gi|320529858|ref|ZP_08030935.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399] gi|320137876|gb|EFW29781.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399] Length = 426 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 71/284 (25%), Positives = 122/284 (42%), Gaps = 15/284 (5%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 V +R + + T + + +++++ L++ QV+L+ + V + Sbjct: 143 EVSASDTGRRVLVDTATNTLLFYGTEAEAFAVREIISALDVK-PRQVSLEARVVSVSKAA 201 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----------DFSVKGVLDRFSFET 258 KQ+G + + PS G+ G GV F + Sbjct: 202 AKQLGVDWTWSALPQYPSVDAGGRVTGRSTGGGRTGTSAPGIIRFGRGPAGVPYEFYYSA 261 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--GATSVTTHDYGVVL 316 + AL + LA P +T + G+ A G + + S +++ + G++L Sbjct: 262 AISALITDGKAKMLARPNVTTVQGREALINIGAEVPVPRTTMSDHVTTSAIDYREAGIIL 321 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 +TP V + G I R+ TEVS PV V ++ R ADTTV L G T+V+ GL+ Sbjct: 322 RYTPRVTADGTITARVHTEVSTPVY-VEELKAYRFQKRSADTTVRLRDGETMVIGGLIDS 380 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 D + IP L +P+LGA FR+ R N+ E+E+ I T ++ Sbjct: 381 DESRSLSKIPFLGDLPVLGAFFRSVRTNKTESELMIFLTARVLD 424 >gi|95928759|ref|ZP_01311505.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] gi|95135104|gb|EAT16757.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] Length = 727 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 66/303 (21%), Positives = 114/303 (37%), Gaps = 21/303 (6%) Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 I V DT + ++ + +Q V+L E + + +++ Sbjct: 429 EIFVINYKDTEAIEDVIDDVLSNQGEVQLIEGSKKIMVNDIPSKLEEIRMLINQLDEPVK 488 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---------SFAADFGGKFVSEGGDF 245 QV ++ I E + G + S + GG F++ Sbjct: 489 QVLIEARIVEADTSAEQTFGIHWGFEFDNDSGSSGGGIGSSLDNAVVGLGGNFITPTSAT 548 Query: 246 SVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G LD + L ALE + + ++ P + A+ G++A G + YKT Sbjct: 549 DGLGTALTFGRVGLDTIVLDLQLSALESSGGGKVISSPKVMALDGETARIGQGTEIPYKT 608 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 S T+ + L TP + I L I S P GV D + ++A+ Sbjct: 609 T--SDNGTTTEFKKAELALEVTPLINPDNTILLEILATNSSP--GVAYTDGVAINTKEAE 664 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + L +G T V+ G+ ++ Q G P L +P +G LF+ + + TE+ I TP Sbjct: 665 TKLLLKNGETTVIGGIYTENEQNSDSGTPYLKDLPFIGNLFKYKTSSNDRTELLIFLTPH 724 Query: 418 LVK 420 +V Sbjct: 725 IVD 727 >gi|304412135|ref|ZP_07393744.1| type IV pilus secretin PilQ [Shewanella baltica OS183] gi|307306879|ref|ZP_07586619.1| type IV pilus secretin PilQ [Shewanella baltica BA175] gi|304349401|gb|EFM13810.1| type IV pilus secretin PilQ [Shewanella baltica OS183] gi|306910457|gb|EFN40887.1| type IV pilus secretin PilQ [Shewanella baltica BA175] Length = 683 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 49/311 (15%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 ++ V+ ++TV++ TI++ R VE+ + + I Sbjct: 395 PRGSVAVDERTNTVLVKDTAETIENIHRLVEVLD----------------------IPIR 432 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------------- 231 QV ++ + V+ D+ + +G + +T S Sbjct: 433 ---QVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGIIPTPDQRLN 489 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 F V + D + L ALE+ +A P +T S Q A++ Sbjct: 490 VNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQ 548 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G + S+S+GATSVT + L TP + R+ L ++ V+ P+ Sbjct: 549 GVEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPA 608 Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ T V + +G TIVL G+ + ++ +P+L IP++G LFRN+ E Sbjct: 609 VAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQ 668 Query: 409 EIFIAATPFLV 419 E+ I TP +V Sbjct: 669 ELLIFVTPKIV 679 >gi|153002584|ref|YP_001368265.1| type IV pilus secretin PilQ [Shewanella baltica OS185] gi|160877305|ref|YP_001556621.1| type IV pilus secretin PilQ [Shewanella baltica OS195] gi|151367202|gb|ABS10202.1| type IV pilus secretin PilQ [Shewanella baltica OS185] gi|160862827|gb|ABX51361.1| type IV pilus secretin PilQ [Shewanella baltica OS195] gi|315269510|gb|ADT96363.1| type IV pilus secretin PilQ [Shewanella baltica OS678] Length = 683 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 49/311 (15%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 ++ V+ ++TV++ TI++ R VE+ + + I Sbjct: 395 PRGSVAVDERTNTVLVKDTAETIENIHRLVEVLD----------------------IPIR 432 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------------- 231 QV ++ + V+ D+ + +G + +T S Sbjct: 433 ---QVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGIIPTPDQRLN 489 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 F V + D + L ALE+ +A P +T S Q A++ Sbjct: 490 VNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQ 548 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G + S+S+GATSVT + L TP + R+ L ++ V+ P+ Sbjct: 549 GVEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPA 608 Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ T V + +G TIVL G+ + ++ +P+L IP++G LFRN+ E Sbjct: 609 VAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQ 668 Query: 409 EIFIAATPFLV 419 E+ I TP +V Sbjct: 669 ELLIFVTPKIV 679 >gi|332994686|gb|AEF04741.1| putative type IV pilus biogenesis protein PilQ [Alteromonas sp. SN2] Length = 586 Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 62/308 (20%), Positives = 118/308 (38%), Gaps = 33/308 (10%) Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 + I + G V + + + + ++K+++ L+I + Sbjct: 286 ATILKSSEGGILSERGTVTVDERTNTML---------IRDTLPSIDEARKMIDALDIPVK 336 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------------------FAAD 233 QV ++ + V ++ +++G + ++ S S + Sbjct: 337 -QVLIESRMVTVLDNVDEELGVRWGLSDRESDSGVSGSIEGAETIAGGSIPSIDDRLNVN 395 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + F + ++D + L ALE +A P +T + Q A G + Sbjct: 396 LPVSSAAGTIGFQIASLVDGTILDLELSALESENKGEIIASPRITVANQQEAYIEQGTEI 455 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351 Y +SS GATSV + L TP + RI L + + + + GD + Sbjct: 456 PYVQATSS-GATSVEFKKAVLSLRVTPQITPDNRIILDLVVTQDTRGETVSTSTGDAVAI 514 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ T V + +G TIVL G+ + +PL +P LG LFRN+ +E+ E+ Sbjct: 515 DTQEIKTQVLVENGETIVLGGIFQQTSTDSVSKVPLFGDLPFLGVLFRNTSEFQEKRELL 574 Query: 412 IAATPFLV 419 I TP ++ Sbjct: 575 IFVTPKII 582 >gi|330447077|ref|ZP_08310727.1| type IV pilus secretin PilQ family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491268|dbj|GAA05224.1| type IV pilus secretin PilQ family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 569 Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 73/414 (17%), Positives = 145/414 (35%), Gaps = 35/414 (8%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 + I ++ ++ + V + + D V P D+++ S Sbjct: 163 FQDIPVRNVLQLIADYNDFNLVVSDSVSGNVTLRLDD--VPWPQVLDIILQSKD----LD 216 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM- 150 K V + +++ ++ + LR + N + +L G Sbjct: 217 KRVRGSVLLVAPKSELTASEHQVMEAKRKQQELSNLRSELIQVN-YAKATDIAALLSGST 275 Query: 151 --VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 V + + T SS K ++ L+I + QV ++ I + Sbjct: 276 DGVGMLSERGSLHVDERTNSLIIKDISDNISSIKNIVESLDIPVK-QVQIEARIVTINEG 334 Query: 209 ILKQIGFQHSIT----GSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------------- 250 + ++G + ++ ++ G S G + V Sbjct: 335 DIDELGVRWGVSKVDGDTTIGGSIEGNLASSGLLDDDATVDDFLNVNLGASAGAASIAFQ 394 Query: 251 ---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 L + L AL+ ++ P L + ++A G + Y SS+GATSV Sbjct: 395 VAKLGNILLDLELSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEA-SSSGATSV 453 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSG 365 + + L TP + ++ L ++ + G S ++ T V + +G Sbjct: 454 SFKKAVLSLMVTPQITPDDKLVLDLEVTQDNKGEDVPTGEGTAVSIDTQRIGTQVLVNNG 513 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T+VL G+ + + + +P+L IP+LGALFR+ + E+ I TP +V Sbjct: 514 ETVVLGGIYQHSMTNVTRKVPVLGDIPVLGALFRHKMEQMGKRELLIFVTPKIV 567 >gi|261820712|ref|YP_003258818.1| general secretion pathway protein D [Pectobacterium wasabiae WPP163] gi|261604725|gb|ACX87211.1| general secretion pathway protein D [Pectobacterium wasabiae WPP163] Length = 640 Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 68/367 (18%), Positives = 133/367 (36%), Gaps = 43/367 (11%) Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLH 148 ANV+ ++ + + + + L R+ N +V +D V VL Sbjct: 209 TANVVADERTNSVLVRGEPNSRQRVIDMVKQLDRQQAVQGNTKVIYLKYAKAADLVEVLT 268 Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 G+ +IQ Q+ + +T ++V+ L+I QV Sbjct: 269 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 327 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240 ++ IAEV+ +G Q + + + + + Sbjct: 328 VEAIIAEVQDADGMNLGVQWANKNAGTTQFTNTGLPITTMMAGADQFRRNGTLSTAATSA 387 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296 G + + ++ ++ AL + LA P++ + A+F G + + Sbjct: 388 LGSFNGIAAGFYQGNWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 447 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRV 353 T S +V G+ L P + + L I+ EVS ++ ++ Sbjct: 448 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSAELGATFNT 507 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R + V + SG T+V+ GLL ++ +PLL IPILG LFR++ + + + Sbjct: 508 RTVNNAVLVSSGETVVVGGLLDKSTRESASKVPLLGDIPILGHLFRSNSQETSKRNLMLF 567 Query: 414 ATPFLVK 420 P +++ Sbjct: 568 IRPSIIR 574 >gi|291612969|ref|YP_003523126.1| general secretion pathway protein D [Sideroxydans lithotrophicus ES-1] gi|291583081|gb|ADE10739.1| general secretion pathway protein D [Sideroxydans lithotrophicus ES-1] Length = 690 Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 81/448 (18%), Positives = 159/448 (35%), Gaps = 50/448 (11%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--M 87 + +A + V+ ++ +N++ +P D + V++ RT + Sbjct: 183 DQPSADAPIVIPVKHASAVDLANIINRL----MPEAAASQSGGDDNQRFVLLADSRTNGL 238 Query: 88 YLFGKNVGQAN-----VILIGHDGKQMLNLDILIERDIAH--LEMTLRRFIADSNIRVEM 140 L N G+ V + N+ ++ ++ L TLR ++ Sbjct: 239 LLRSGNPGRIARVKELVTKLDSAANTPGNIHVVQLKNADATKLAQTLRSVLSGETAPPAA 298 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 S G+ + +A S + + Y N S V++ L++ Q+ ++ Sbjct: 299 PSTVPQSAGVATSSTGMIQADPSSNALIVTASEPIYNNLRS--VIDKLDVRRP-QIFVEA 355 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------------ 242 I EV D + G Q +S V+ G Sbjct: 356 LIVEVTADKAAEFGVQWQNLVGASKSGAHIIGGTNFGSVASGNNIIDAANNLSTVNQGLN 415 Query: 243 -----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G ++ GV + + ALE T L+EP L + + A G + T Sbjct: 416 IGIVNGTTTIPGVGTVLNLGMLARALETDTNANILSEPNLMTLDNEEAKIVVGQNVPFIT 475 Query: 298 VS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 ++T ++ D G+ L P ++ G + L+I EVS + ++ Sbjct: 476 GQYAQTGSATTATPFQTIERKDVGLTLKIKPQIMQGGTVKLQIYQEVSSVLPSSSSSTSG 535 Query: 350 SY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R ++ + + +VL GL++D + ++ PLL IPILG+LFR +T Sbjct: 536 LITNKRSIESNILVDDNQIVVLGGLIQDSVNDVQSKTPLLGDIPILGSLFRYDTRQHTKT 595 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + + P+++ + D++ Sbjct: 596 NLMVFIRPYIM--YQQNSYQQLTDNFYE 621 >gi|83746397|ref|ZP_00943449.1| GspD [Ralstonia solanacearum UW551] gi|83726938|gb|EAP74064.1| GspD [Ralstonia solanacearum UW551] Length = 809 Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235 A QV ++ I EV D Q+G Q + +FG Sbjct: 433 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 492 Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G VS + +L AL ++ L+ P Sbjct: 493 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 552 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G T S + T + D G+ L P + G + Sbjct: 553 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLV 612 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P Sbjct: 613 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 672 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 L IPILGALFR+ R++T + + P++++ A + D+ Y Sbjct: 673 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 718 >gi|207722789|ref|YP_002253224.1| general secretory pathway protein d [Ralstonia solanacearum MolK2] gi|206587973|emb|CAQ18554.1| general secretory pathway protein d [Ralstonia solanacearum MolK2] Length = 809 Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235 A QV ++ I EV D Q+G Q + +FG Sbjct: 433 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 492 Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G VS + +L AL ++ L+ P Sbjct: 493 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 552 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G T S + T + D G+ L P + G + Sbjct: 553 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLV 612 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P Sbjct: 613 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 672 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 L IPILGALFR+ R++T + + P++++ A + D+ Y Sbjct: 673 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 718 >gi|323497014|ref|ZP_08102037.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326] gi|323317858|gb|EGA70846.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326] Length = 675 Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 63/460 (13%), Positives = 149/460 (32%), Gaps = 97/460 (21%) Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98 I + + ++ ++ ++ V + ++ S M + + + Sbjct: 163 NIILITGRAAVVNRLADIIKRVDQAGDKEIEVVELANASAAEMVRIVEALNKTTDTKNTP 222 Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 ++ +++ D + LR I ++ + + V++ Sbjct: 223 AFLKPKLVADDRTNSILISGD-------PQVRQRLRNLIKQLDVEMASKGNNRVVYLKYA 275 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKK----------------------------V 184 ++ ++ L + +S+K+ V Sbjct: 276 NAEELVEVLKGVSDNLQAEKSSGKKGTSAKRGEVMIAAHPDTNALVLTAPPDIMNALQDV 335 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------- 223 + L+I QV ++ I E+ +G Q + Sbjct: 336 IAQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAMIQYGNTGAPIGQVMVGLEE 394 Query: 224 ------------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + + DF + + + ++ A+ Sbjct: 395 AKDTETTKAVYDSDGEFVRNETTTEKGDFTTLAAALSSVNGAALSVVMGDWTALISAVST 454 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTP 320 + L+ P++T + ASF G + T ++ +V + G+ L P Sbjct: 455 DSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVP 514 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + L+I+ EVS + A D+ + R+ +T+V + G IVL GL+ + + Sbjct: 515 QINEGNSVQLKIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVEDGQMIVLGGLIDERALE 573 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +PLL IP+LG LF+++ E+ + + P +++ Sbjct: 574 SESKVPLLGDIPVLGHLFKSTNTQVEKKNLMVFIKPTIIR 613 >gi|89075207|ref|ZP_01161638.1| putative fimbrial assembly protein [Photobacterium sp. SKA34] gi|89049029|gb|EAR54596.1| putative fimbrial assembly protein [Photobacterium sp. SKA34] Length = 568 Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 74/416 (17%), Positives = 143/416 (34%), Gaps = 39/416 (9%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 + I ++ ++ + V + + D V P D+++ S Sbjct: 162 FQDIPVRNVLQLIADYNDFNLVVSDSVSGNVTLRLDD--VPWPQVLDIILQSKD----LD 215 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 K V + +++ ++ + ++LR + N + +L G Sbjct: 216 KRVRGSVLLVAPKAELTANEHQVMEAKRKQQELLSLRSDLIQVN-YAKATDIAELLSGNA 274 Query: 152 RTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 + L T S K +++ L+I + QV ++ I + Sbjct: 275 DGVGMLSERGSLHVDERTNALIIKDTPDNIRSIKDIVSSLDIPVK-QVQIEARIVTINEG 333 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------------------GDF 245 + ++G + + S + G S G Sbjct: 334 DIDELGVRWGV--SKVNGDTTVGGSIEGNLASSGLLGENASVDDFLNVNLGAGAGAASIA 391 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 L + L AL+ ++ P L + ++A G + Y SS+GAT Sbjct: 392 FQVAKLGNILLDLELSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEA-SSSGAT 450 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELP 363 SV+ + L TP + ++ L ++ + G S ++ T V + Sbjct: 451 SVSFKKAVLSLMVTPQITPDDKLVLDLEVTQDNKGEDVPTGTGTAISIDTQRIGTQVLVN 510 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G T+VL G+ + + + +PLL IPILGALFR+ + E+ I TP +V Sbjct: 511 NGETVVLGGIYQHSMTHVTRKVPLLGDIPILGALFRHKMEQMGKRELLIFVTPKIV 566 >gi|254238253|ref|ZP_04931576.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa C3719] gi|126170184|gb|EAZ55695.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa C3719] Length = 710 Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 93/267 (34%), Gaps = 33/267 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236 ++++ L+I QV ++ I E K +G + + + G Sbjct: 436 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHNGNWNSYGKNGNMGIKDKEG 494 Query: 237 -------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 + + D + L A+E+ Sbjct: 495 YNCGPFQGQCTFPTRDNSPTPFVDMGAKDATSGIGIGFITDNIILDLQLSAMEKTGNGEV 554 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS ++ + + + L TP + RI + Sbjct: 555 VSQPKVVTSDKETAKILKGSEIPYQEASSSGATST-SFKEAALSLEVTPQITPDNRIIVE 613 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ P +P + + + + G TIV+ G+ + + + +P L + Sbjct: 614 VKVTKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQTKAVDKVPFLGDL 673 Query: 392 PILGALFRNSRFNREETEIFIAATPFL 418 P LG LFR + + E+ + TP + Sbjct: 674 PYLGRLFRRDTVSDTKNELLVFLTPRI 700 >gi|322421237|ref|YP_004200460.1| general secretion pathway protein D [Geobacter sp. M18] gi|320127624|gb|ADW15184.1| general secretion pathway protein D [Geobacter sp. M18] Length = 638 Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 14/254 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-------- 234 +V+ L+ QV ++ IAEV + K +G Q + ++S + S F Sbjct: 345 QVIQKLD-RRSRQVYVQAMIAEVSVNKAKDLGVQLGVITAASNGTVSAIGTFDPFGTVAG 403 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 V+ ++ L + + VL AL+ A+ L+ P + + A G Sbjct: 404 LSTTVTAAKALGMEVTLGKVNIPVVLQALQTNGALNVLSTPNIMTSDNKEAEIFVGESVP 463 Query: 295 YKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMP 349 + + ++ T S+ D G++L P + + L I E+S G Sbjct: 464 FVSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYVKLDIYQEISAVKEFGTATESNL 523 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R A T+V + + T+++ GL++D Q + IPLL IP LG LF+ R++ Sbjct: 524 GSTKRSAKTSVVVKNSDTVLIGGLIQDTDQVTESKIPLLGDIPGLGWLFKTRSTKRDKVN 583 Query: 410 IFIAATPFLVKPVA 423 + I TP ++K Sbjct: 584 LLIMLTPRIIKDAR 597 >gi|217975149|ref|YP_002359900.1| type IV pilus secretin PilQ [Shewanella baltica OS223] gi|217500284|gb|ACK48477.1| type IV pilus secretin PilQ [Shewanella baltica OS223] Length = 683 Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 49/311 (15%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 ++ V+ ++TV++ TI++ R VE+ + + I Sbjct: 395 PRGSVAVDERTNTVLVKDTAETIENIHRLVEVLD----------------------IPIR 432 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------------- 231 QV ++ + V+ D+ + +G + +T S Sbjct: 433 ---QVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGIIPTPDQRLN 489 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 F V + D + L ALE+ +A P +T S Q A++ Sbjct: 490 VNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQ 548 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G + S+S+GATSVT + L TP + R+ L ++ V+ P+ Sbjct: 549 GVEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPA 608 Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ T V + +G TIVL G+ + ++ +P+L IP++G LFRN+ E Sbjct: 609 VAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQ 668 Query: 409 EIFIAATPFLV 419 E+ I TP +V Sbjct: 669 ELLIFVTPKIV 679 >gi|117922327|ref|YP_871519.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3] gi|117614659|gb|ABK50113.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3] Length = 684 Score = 176 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 26/298 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204 +L G ++ + +V + E + ++ + +++ +L+I QV ++ + Sbjct: 385 LLKGADSSLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIR-QVLIESRMVT 443 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------------GG 243 V+ D+ + +G + +T S + G + Sbjct: 444 VKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIANGVVPSLDNRLNVNLPAAVTNPTSI 503 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F V + D + L ALE+ +A P +T S Q A++ G + S+S+G Sbjct: 504 AFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSG 562 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361 ATSVT + L TP + R+ L ++ V+ P+ ++ T V Sbjct: 563 ATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVL 622 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V Sbjct: 623 VDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680 >gi|262044789|ref|ZP_06017834.1| general secretion pathway protein D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037872|gb|EEW39098.1| general secretion pathway protein D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 657 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 75/412 (18%), Positives = 146/412 (35%), Gaps = 54/412 (13%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149 ANV+ +++ + + I + L R+ N +V +D V VL G Sbjct: 226 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 285 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196 + ++Q +++ + +++ ++V+ L+I QV Sbjct: 286 ISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 344 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242 ++ IAEV+ +G Q + + + Sbjct: 345 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSSLAS 404 Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + + ++ +L AL +T LA P++ + A+F G + T S Sbjct: 405 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 464 Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352 +T +V G+ L P + + L I+ EVS ++ ++ Sbjct: 465 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 524 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + + + Sbjct: 525 TRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLML 584 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 P +++ D Y + FN KE+SE + Sbjct: 585 FIRPTIIRDR---------DEYRQASSGQYTAFNNAQTKQRGKESSEASLSS 627 >gi|90414685|ref|ZP_01222656.1| putative type II secretory pathway, component EpsD [Photobacterium profundum 3TCK] gi|90324227|gb|EAS40802.1| putative type II secretory pathway, component EpsD [Photobacterium profundum 3TCK] Length = 670 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 107/289 (37%), Gaps = 42/289 (14%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + + ++ L+I QV ++ I E+ G Q+ + Sbjct: 322 TAPPDIMRALESIIAQLDIR-RAQVLIEAMIVELSEGDGINFGVQYGSEDGGVIQFGNSG 380 Query: 232 -----------------------------------ADFGGKFVSEGGDFSVKGVLDRFSF 256 DF GG + + Sbjct: 381 VPISQYAIGLQEAQDVPGSTVTDVNGNVTVNEPTQGDFSTLASVLGGVNGAAMGIVLGDW 440 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHD 311 +++A+ + L+ P++T + ASF G + T S+ +V + Sbjct: 441 TMLVNAVATDSNSNILSSPSITVMDNGEASFIVGEEVPVVTGSTSSSSNDNPFQTVERKE 500 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G+ L+ TP + + L+I+ EVS + A D+ + R+ +T+V + G I L Sbjct: 501 VGIKLNVTPQINEGDSVQLKIEQEVSSVLGASGAVDV-RFAKRQINTSVLVQDGQMIALG 559 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GL+ ++ ++ + +P+L IP LG LF+++ +T + + P +++ Sbjct: 560 GLISEETKESESKVPILGDIPFLGFLFKSTNTTTAKTNLMVFIKPTIIR 608 >gi|152968741|ref|YP_001333850.1| pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893139|ref|YP_002917873.1| pullulanase-specific type II secretion system secretin [Klebsiella pneumoniae NTUH-K2044] gi|150953590|gb|ABR75620.1| Pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545455|dbj|BAH61806.1| pullulanase-specific type II secretion system secretin [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 657 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 75/409 (18%), Positives = 145/409 (35%), Gaps = 54/409 (13%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149 ANV+ +++ + + I + L R+ N +V +D V VL G Sbjct: 226 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 285 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196 + ++Q +++ + +++ ++V+ L+I QV Sbjct: 286 ISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 344 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242 ++ IAEV+ +G Q + + + Sbjct: 345 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSSLAS 404 Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + + ++ +L AL +T LA P++ + A+F G + T S Sbjct: 405 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 464 Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352 +T +V G+ L P + + L I+ EVS ++ ++ Sbjct: 465 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 524 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + + + Sbjct: 525 TRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLML 584 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 P +++ D Y + FN KE+SE Sbjct: 585 FIRPTIIRDR---------DEYRQASSGQYTAFNNAQTKQRGKESSEAS 624 >gi|332532305|ref|ZP_08408185.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas haloplanktis ANT/505] gi|332038172|gb|EGI74618.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas haloplanktis ANT/505] Length = 701 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 100/262 (38%), Gaps = 28/262 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229 +++ L+I QV ++ + VR ++ + +G + + S S Sbjct: 439 RMIETLDIP-VQQVVIESRMVTVRDNVTEDLGVRWGFSDQGSSVGISGSLEGAEGIYNAT 497 Query: 230 -----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + + + + + L ALE +A P + Sbjct: 498 STSDAPSISDRLNVNLPITNPAASIGLHIAKLANGTLIDLELSALEEENKGEIIASPRII 557 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A + Q A G + Y +SS GAT+V+ + L TP + ++ L + Sbjct: 558 AANQQKARIEQGTEIPYTESASS-GATTVSFKKAVLSLEVTPHITPDNKVILDLIITQDT 616 Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + G+ S ++ T V + +G T+VL G+ + I +P+L IP +G Sbjct: 617 RGDTVQTGTGEAVSIDTQEIQTQVLVENGQTVVLGGIFQQQIINTTSKVPILGDIPYVGR 676 Query: 397 LFRNSRFNREETEIFIAATPFL 418 LF+ + E+ E+ I TP + Sbjct: 677 LFKTTSEFNEKRELLIFVTPKI 698 >gi|330010541|ref|ZP_08306775.1| general secretion pathway protein D [Klebsiella sp. MS 92-3] gi|328534526|gb|EGF61113.1| general secretion pathway protein D [Klebsiella sp. MS 92-3] Length = 657 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 75/409 (18%), Positives = 145/409 (35%), Gaps = 54/409 (13%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149 ANV+ +++ + + I + L R+ N +V +D V VL G Sbjct: 226 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 285 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196 + ++Q +++ + +++ ++V+ L+I QV Sbjct: 286 ISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 344 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242 ++ IAEV+ +G Q + + + Sbjct: 345 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSSLAS 404 Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + + ++ +L AL +T LA P++ + A+F G + T S Sbjct: 405 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 464 Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352 +T +V G+ L P + + L I+ EVS ++ ++ Sbjct: 465 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 524 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + + + Sbjct: 525 TRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLML 584 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 P +++ D Y + FN KE+SE Sbjct: 585 FIRPTIIRDR---------DEYRQASSGQYTAFNNAQTKQRGKESSEAS 624 >gi|119475138|ref|ZP_01615491.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2143] gi|119451341|gb|EAW32574.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2143] Length = 733 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 116/312 (37%), Gaps = 45/312 (14%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRD 208 + S R + + + + A + +V+ LL++ QV ++ I Sbjct: 418 ASSSMLSARGSVIVDERTNSLLVTETAQKLQELRRVIRLLDVPVR-QVLVEARIVIANSS 476 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGG-------------------------------- 236 +++G + G + + G Sbjct: 477 FDEELGVKWGAAGVNQINGDNQLFFGGNTESIEASRNSVADAMINIAQGNAITEAILAPD 536 Query: 237 ------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + G +V V + L+ALE +++P + Q A SG Sbjct: 537 ALNVDLGVANPTGSVAVGFVSSDVILQMELNALESQGRGEIVSQPKVITGDKQEAIIKSG 596 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGD 347 + Y+ S+ G T+++ + + L TP++ RI ++++ V N G Sbjct: 597 SEVPYQES-SANGETTISFKEAVLKLQVTPSITPDDRIIMKLEINQDSIGTLVPSGNGGV 655 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P+ + T V + +G T+VL G+ + + + +P+L IP LG LF N+ +E+ Sbjct: 656 VPTIDTTELTTQVLVGNGETVVLGGVFRTVDVESESKVPVLGDIPYLGRLFTNTTVTQEK 715 Query: 408 TEIFIAATPFLV 419 TE I TP ++ Sbjct: 716 TETLIFITPRIL 727 >gi|40644697|emb|CAD91899.1| secretin precursor [Neisseria meningitidis serogroup B] Length = 761 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554 Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D + S+ + + L A E + +TLA P + + + Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKPKTLANPRVLTQNRKE 614 Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S + G +T+ + L TP + G+I + ++ P Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734 Query: 402 RFNREETEIFIAATPFL 418 + E+ I TP + Sbjct: 735 GKKTDRRELLIFITPRI 751 >gi|332851464|ref|ZP_08433461.1| general secretion pathway protein D [Acinetobacter baumannii 6013150] gi|332866854|ref|ZP_08437241.1| general secretion pathway protein D [Acinetobacter baumannii 6013113] gi|332729917|gb|EGJ61248.1| general secretion pathway protein D [Acinetobacter baumannii 6013150] gi|332734382|gb|EGJ65503.1| general secretion pathway protein D [Acinetobacter baumannii 6013113] Length = 758 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 103/269 (38%), Gaps = 32/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276 + L+ +F+ ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLELGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S + T+V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP +G LFR+ + + + + P +V Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649 >gi|224372077|ref|YP_002606449.1| putative GspD [Nautilia profundicola AmH] gi|223589087|gb|ACM92823.1| putative GspD [Nautilia profundicola AmH] Length = 580 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 115/244 (47%), Gaps = 8/244 (3%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFVS- 240 ++ L+I + QV +K I E+ QIG + + S S + +A+ GG ++ Sbjct: 305 IIKALDIP-KMQVYVKARILEISNLKASQIGNKLGLYAGSGTGSGLYTLSANMGGPAIAF 363 Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YK 296 S+ + + + LE A + L+EP++ I+ ++ G Sbjct: 364 DVTSLGLSIPTIRQGLALGATIDLLETFGAAKKLSEPSILCINNTPSTIYVGKTISVKTG 423 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 +S++ + S + D G+ L P + S ++ L ++ V + + G +P+ R Sbjct: 424 QTTSTSTSVSYSRQDIGLTLEIKPRIDSDNKVSLNVKAVVEDILPGSPDLTLPTTSKRDI 483 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 TT + +G +I++ GL++++ + +P IPI+GALFR+ N ++T + I TP Sbjct: 484 KTTTIVSNGQSIIIGGLVRNNKDITIKKVPFFGDIPIIGALFRHKEVNEDKTTLVIVLTP 543 Query: 417 FLVK 420 ++VK Sbjct: 544 YIVK 547 >gi|260774763|ref|ZP_05883666.1| general secretion pathway protein D precursor [Vibrio coralliilyticus ATCC BAA-450] gi|260609325|gb|EEX35477.1| general secretion pathway protein D precursor [Vibrio coralliilyticus ATCC BAA-450] Length = 676 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 109/293 (37%), Gaps = 45/293 (15%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSS 224 ++ + V++ L+I QV ++ I E+ +G Q I ++ Sbjct: 323 TAPPDIMNALQDVISQLDIR-RAQVLIEALIVEMTEGDGINLGVQWGSLETGAVIQYGNA 381 Query: 225 GPSKSFA-------------------------------ADFGGKFVSEGGDFSVKGVLDR 253 G D+ + G + Sbjct: 382 GTKIGNVMVGLEEAEDQKSTEYYTNSAGERVPYDVTEPGDYSTLASALSGVNGAALSVVM 441 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVT 308 + ++ A+ T L+ P++T + ASF G + T ++ +V Sbjct: 442 GDWTALISAVSSDTNSNILSSPSITVMDNGEASFIVGEEVPVITGSAAGSNNDNPFQTVD 501 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGT 367 + G+ L P + + L I+ EVS + + + S+ R+ +T+V + G Sbjct: 502 RKEVGIKLKVVPQINEGNSVQLTIEQEVSNVLPATSNAAVDVSFAKRQLNTSVMVEDGQM 561 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IVL GL+ + Q+ + +PLL IP LG LF+++ +++ + + P +++ Sbjct: 562 IVLGGLIDERAQESESKVPLLGDIPYLGRLFKSTSSQLQKSNLMVFIKPTIIR 614 >gi|254507255|ref|ZP_05119391.1| general secretion pathway protein D [Vibrio parahaemolyticus 16] gi|219549715|gb|EED26704.1| general secretion pathway protein D [Vibrio parahaemolyticus 16] Length = 678 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 68/462 (14%), Positives = 152/462 (32%), Gaps = 99/462 (21%) Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98 I + + ++ ++ ++ V + D+ S M + + + N Sbjct: 164 NIILITGRAAVVNRLADIIKRVDQAGDKEIEVVDLDNASAAEMVRIVEALNKTNDSKNTP 223 Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV------ 146 ++ +++ D + LR+ I ++ + + V Sbjct: 224 AFLQPKLVADDRTNSILISGD-------PQVRQRLRKLIKQLDVEMASKGNNRVVYLKYA 276 Query: 147 --------LHGMVRTIQD-------------SQRAVELSETFLSQSGRNQYAN--SSSKK 183 L G+ +Q + + + + ++ + Sbjct: 277 KAEELVDVLKGVSDNLQAEKSAGSKSSSSAKRGEVMIAAHPDTNALVLTAPPDIMNALQD 336 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA----- 231 V++ L+I QV ++ I E+ +G Q I ++G Sbjct: 337 VISQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAMIQYGNAGAPIGQVMVGLE 395 Query: 232 ----------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 D+ + G L + ++ A+ Sbjct: 396 EAKDTTEKKPIRDSNTGAIKYYEETTKQGDYSTLAAALAGVNGAAVSLVMGDWTALISAV 455 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHF 318 + L+ P++T + ASF G + T ++ +V + G+ L Sbjct: 456 STDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKV 515 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + + L I+ EVS + A D+ + R+ +T+V + G IVL GL+ + Sbjct: 516 VPQINEGNSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVNDGQMIVLGGLIDERA 574 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +PLL IP+LG LF+++ E+ + + P +++ Sbjct: 575 LESESKVPLLGDIPVLGHLFKSTSTQVEKKNLMVFIKPTIIR 616 >gi|224171310|ref|XP_002339480.1| predicted protein [Populus trichocarpa] gi|222875215|gb|EEF12346.1| predicted protein [Populus trichocarpa] Length = 263 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 22/254 (8%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---------SFAADF 234 ++N L+ QV ++ I E + G + S + Sbjct: 15 LINQLD-EPVKQVLIEARIVEADTSAEQTFGIHWGFEFDNDSGSSGGGIGSSLDNAVVGL 73 Query: 235 GGKFVSEGGDFSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 GG F++ G LD + L ALE + + ++ P + A+ G++A Sbjct: 74 GGNFITPTSATDGLGTALTFGRVGLDTIVLDLQLSALESSGGGKVISSPKVMALDGETAR 133 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 G + YKT S T+ + L TP + I L I S P GV Sbjct: 134 IGQGTEIPYKTT--SDNGTTTEFKKAELALEVTPLINPDNTILLEILATNSSP--GVAYT 189 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D + ++A+T + L +G T V+ G+ ++ Q G P L +P +G LF+ + + Sbjct: 190 DGVAINTKEAETKLLLKNGETTVIGGIYTENEQNSDSGTPYLKDLPFIGNLFKYKTSSND 249 Query: 407 ETEIFIAATPFLVK 420 TE+ I TP +V Sbjct: 250 RTELLIFLTPHIVD 263 >gi|56460012|ref|YP_155293.1| Flp pilus assembly protein CpaC [Idiomarina loihiensis L2TR] gi|56179022|gb|AAV81744.1| possible Flp pilus assembly protein CpaC [Idiomarina loihiensis L2TR] Length = 404 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 86/368 (23%), Positives = 150/368 (40%), Gaps = 39/368 (10%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + + I+ + D+L+SD + DV V L G VG+A+ + + + Sbjct: 34 LEEGETRIISI-EPGSDILISDESVVDVHVLDNSRAILRGVGVGKAD--IWLKSEEVLKE 90 Query: 112 LDILIERDIA-HLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 L I++ + LE L A+ ++ S VL G V Sbjct: 91 LKIMVTASLKLSLEGRLEAISEAEQSLNKTEKSGLTVLSGKVS---------------KR 135 Query: 170 QSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + + + ++++NL +TL+V I E +R L+ +G + + Sbjct: 136 NYEELEKISENHEEILNLTESFQEEPPMLTLRVNILETKRQYLEDLGIRWQ----GTTSG 191 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 +F++ G F + + L ++R + LA P L+ SG+ A+F Sbjct: 192 PTFSSSLSGLFEWDA------------EINSQLMLMQRRGLAKLLANPVLSTQSGEKATF 239 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 +GG+ V + G VT +YG+ L P VL RI ++ E+S V+ Sbjct: 240 LAGGELPIPQVV-AQGMQDVTFREYGIRLVIQPVVLDDNRIKTQLHAELSNIDPAVSVSG 298 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P R+ ++ G T+VL+GLL D + IP L +PIL FR+ + + Sbjct: 299 VPGILSRRTESVFLSNDGDTLVLSGLLSTDESAQDDQIPGLGSLPILENAFRSQQNREQT 358 Query: 408 TEIFIAAT 415 TE+ I T Sbjct: 359 TELIIMVT 366 >gi|110833080|ref|YP_691939.1| type II secretion system protein [Alcanivorax borkumensis SK2] gi|110646191|emb|CAL15667.1| type II secretion system protein, probable [Alcanivorax borkumensis SK2] Length = 406 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 121/249 (48%), Gaps = 11/249 (4%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV + I EV R L GF++S A+ GG G S Sbjct: 141 QVQTDIRIMEVSRSKLNSFGFEYSNIFDGGNTQVGVASPGGG-----GPSDSFNLFRLGK 195 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + T+++ALE TLA+P+LTA+SGQ+A+F SGG+ T S + G V +G+ Sbjct: 196 NSTTIINALESGGFAYTLAKPSLTALSGQTATFLSGGEFPVPTRSDNNG-VQVEFKSFGI 254 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVL 370 L TPTV+S +I L++ EVSE +P RVR+++TTV L G T ++ Sbjct: 255 GLALTPTVISGDQIILKVAPEVSELDFSAGVESAGTSIPGLRVRRSETTVSLAPGETFII 314 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSR 429 +GL+ + IP L +P+LGA FR+ + +RE+ E+ + TP LV P + Sbjct: 315 SGLVSQNTVNNSNRIPGLGNLPVLGAFFRSGQLSREDKEMVMVVTPHLVSPGSSTEAGPL 374 Query: 430 PDDHYSVED 438 P Y Sbjct: 375 PGAGYHNSS 383 >gi|254374542|ref|ZP_04990023.1| type IV pilin multimeric outer membrane protein [Francisella novicida GA99-3548] gi|151572261|gb|EDN37915.1| type IV pilin multimeric outer membrane protein [Francisella novicida GA99-3548] Length = 594 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 72/420 (17%), Positives = 154/420 (36%), Gaps = 38/420 (9%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84 P A + + + +++ ++ + + +D+++V P ++V+ S Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 L K + + + L++ +R + + + FI + + Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292 Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + +G + + + S A + T + K+V+N ++I DQV ++ Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------------EGGD 244 I EV R ++GF + + S + + Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPTPTPTPVDTFVGTTA 409 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + V + + ALE + +A P L + Q A F G+ + ++++GA Sbjct: 410 KLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGA 468 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTT 359 +V + + L TP + G I + I + P + R+ T Sbjct: 469 AAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTK 528 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++ Sbjct: 529 VMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 588 >gi|75994479|ref|YP_325593.1| type II secretion protein [Escherichia coli O157:H7 EDL933] gi|3822147|gb|AAC70101.1| type II secretion protein [Escherichia coli O157:H7] Length = 642 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 21/269 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + V++ L+I QV ++ IAE++ +G Q + S Sbjct: 311 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 369 Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + + + ++ +L AL ++ LA P++ Sbjct: 370 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 429 Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + A+F G + + S +T +V G+ L P + + L I+ Sbjct: 430 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 489 Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS + + ++ R + + +G T+V+ GLL I+ + +PLL I Sbjct: 490 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDI 549 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P+LG LFR + + + P +++ Sbjct: 550 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 578 >gi|297517403|ref|ZP_06935789.1| general secretory pathway component, cryptic [Escherichia coli OP50] Length = 503 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 107/295 (36%), Gaps = 27/295 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208 + + V ++ + S S +K V+ L+I QV ++ I EV+ Sbjct: 155 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 213 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDR--- 253 +G Q + + + G S + + + Sbjct: 214 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 273 Query: 254 ----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 + +L AL LA P++ + + ASF G + S + Sbjct: 274 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 333 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V G L TP V + L I+ EVS N+ P++ R V + +G Sbjct: 334 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 393 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GLL D ++ PLL IP++G LFR + R + + + P +++ Sbjct: 394 ETVVLGGLLDDFSKEQVSKAPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 448 >gi|116053188|ref|YP_793509.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa UCBPP-PA14] gi|115588409|gb|ABJ14424.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa UCBPP-PA14] Length = 710 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 93/267 (34%), Gaps = 33/267 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236 ++++ L+I QV ++ I E K +G + + + G Sbjct: 436 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHNGNWNSYGKNGNMGIKDKEG 494 Query: 237 -------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 + + D + L A+E+ Sbjct: 495 YNCGPFQGQCTFPTRDNSPTPFVDMGAKDASSGIGIGFITDNIILDLQLSAMEKTGNGEV 554 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS ++ + + + L TP + RI + Sbjct: 555 VSQPKVVTSDKETAKILKGSEIPYQEASSSGATST-SFKEAALSLEVTPQITPDNRIIVE 613 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ P +P + + + + G TIV+ G+ + + + +P L + Sbjct: 614 VKVTKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQTKAVDKVPFLGDL 673 Query: 392 PILGALFRNSRFNREETEIFIAATPFL 418 P LG LFR + + E+ + TP + Sbjct: 674 PYLGRLFRRDTVSDTKNELLVFLTPRI 700 >gi|254516135|ref|ZP_05128195.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3] gi|219675857|gb|EED32223.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3] Length = 732 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 117/291 (40%), Gaps = 36/291 (12%) Query: 163 LSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + E+ + + ++ ++ ++++L++I QV ++ I + D+ K++G Q Sbjct: 438 IVESRTNSLIVTETSSKLAEIRELIDLVDIPIR-QVMIESRIVIAQSDLEKELGIQWGGG 496 Query: 221 GSSSGPSKSFAADFG-----------------------------GKFVSEGGDFSVKGVL 251 + + + G S F+V Sbjct: 497 YLDGDANGNILSVTGDAANAVNLNNSVINGTQPDLSYPGALLVDLGSGSATSGFAVGFTS 556 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + L ALE A +++P + Q A+ SG + ++ ++S GAT+V + Sbjct: 557 NSLYLTAELSALEAAGKSEVVSQPKVITGDKQPATIKSGTEIPFQQAAAS-GATAVQFKE 615 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + L TP + RI L + V + V G +P+ + T V + +G T+ Sbjct: 616 AVLKLDVTPNITPDDRILLDLVINQDSVGDLVPSGQGGLIPAIDTTQLTTQVLVGNGETV 675 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + + +P +P +GALFRN R +TE I TP ++ Sbjct: 676 VLGGVFRTENLETTSKVPFFGDLPYVGALFRNESNQRTKTETLIFITPRIL 726 >gi|146280952|ref|YP_001171105.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri A1501] gi|145569157|gb|ABP78263.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri A1501] Length = 712 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 54/324 (16%), Positives = 119/324 (36%), Gaps = 28/324 (8%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 ++A L + + + + +V +G V + S + + ++ + + Sbjct: 381 ELAPLRREVVQVNYAKAADIARLFQSVTNNGGVAEERGSIAVDDRTNNIIAYQTQERLDE 440 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-- 236 +++ L+I QV ++ I E D K +G + + ++ + Sbjct: 441 LR--RIVAQLDIPVR-QVMIEARIVEANVDYDKSLGVRWGGNLGAGNKWSAWGKNGNLDI 497 Query: 237 ---------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 V + V D + L A+E+ +++P Sbjct: 498 EDGEDGGQQITWPMNTPFVDMGAVGSTSGIGLGFVTDNAILDLQLSAMEKTGNGEVVSQP 557 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + ++A G + Y+ SSS ++ + + + L TP + RI + ++ Sbjct: 558 KVVTADKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRIIMEVKVT 616 Query: 336 VSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EP +P+ R + + V + G TIV+ G+ + + + +P L +P L Sbjct: 617 KDEPDFSQAATTGVPAIRKNEVNAKVLVTDGETIVIGGVFSNTQSKSVDKVPFLGDLPYL 676 Query: 395 GALFRNSRFNREETEIFIAATPFL 418 G LFR ++E+ + TP + Sbjct: 677 GRLFRRDLVQDRKSELLVFITPRI 700 >gi|28896907|ref|NP_796512.1| general secretion pathway protein D [Vibrio parahaemolyticus RIMD 2210633] gi|260365906|ref|ZP_05778400.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030] gi|260877807|ref|ZP_05890162.1| general secretion pathway protein D [Vibrio parahaemolyticus AN-5034] gi|260895544|ref|ZP_05904040.1| general secretion pathway protein D [Vibrio parahaemolyticus Peru-466] gi|260902568|ref|ZP_05910963.1| general secretion pathway protein D [Vibrio parahaemolyticus AQ4037] gi|28805115|dbj|BAC58396.1| general secretion pathway protein D precursor [Vibrio parahaemolyticus RIMD 2210633] gi|308088533|gb|EFO38228.1| general secretion pathway protein D [Vibrio parahaemolyticus Peru-466] gi|308089966|gb|EFO39661.1| general secretion pathway protein D [Vibrio parahaemolyticus AN-5034] gi|308109694|gb|EFO47234.1| general secretion pathway protein D [Vibrio parahaemolyticus AQ4037] gi|308113427|gb|EFO50967.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030] Length = 675 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 67/455 (14%), Positives = 154/455 (33%), Gaps = 85/455 (18%) Query: 49 KISIGLNKVIIL-QVPVDVQDV-LVSDPTKADVVVHSPRT---MYLFGKNVGQAN----- 98 I + + ++ ++ ++ V D V + + + + N Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKEIELVELRNASAAEMVRIVEALNKTTNQKSTP 220 Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145 ++ +++ D + + L L +A ++ D V Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190 VL G+ +Q ++A + + + A+ ++ V++ L+I Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGDVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPS---------------- 227 QV ++ I E+ +G Q I ++G Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGSLETGAVIQYGNAGAPIGQVMVGLEEAKDTVE 399 Query: 228 -----------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 + D+ + + + ++ A+ + Sbjct: 400 KKPIRDSDTGAIKYYEETTTKGDYSTLASALKNVNGAAMSIVMGDWTALVSAVASDSNSN 459 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSP 325 L+ P++T + ASF G + T ++ +V + G+ L P + Sbjct: 460 ILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEG 519 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + + Sbjct: 520 DSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKV 578 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 PLL IP+LG LF+++ ++ + + P +++ Sbjct: 579 PLLGDIPVLGHLFKSTSTQTQKRNLMVFIKPTIIR 613 >gi|27364325|ref|NP_759853.1| general secretion pathway protein D [Vibrio vulnificus CMCP6] gi|320157717|ref|YP_004190096.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O] gi|27360443|gb|AAO09380.1| general secretion pathway protein D [Vibrio vulnificus CMCP6] gi|319933029|gb|ADV87893.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O] Length = 673 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 112/319 (35%), Gaps = 48/319 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEV 205 G V + + + + + V+ L+I QV ++ I E+ Sbjct: 295 SGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQDVITQLDIR-RAQVLIEALIVEM 353 Query: 206 RRDILKQIGFQHS-------ITGSSSGPSKSFA--------------------------- 231 +G Q I S++G S Sbjct: 354 AEGDGVNLGVQWGNLETGAMIQYSNTGASIGQVMIGLEEAKDTTKTESRWDPDKNQWVDR 413 Query: 232 -----ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 D+ + + + ++ A+ + L+ P++T + AS Sbjct: 414 QYTEKGDYSTLASALSKVNGAALSVVMGDWTALISAVSSDSNSNILSSPSITVMDNGEAS 473 Query: 287 FTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 F G + T ++ +V + G+ L P + + L I+ EVS + Sbjct: 474 FIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLG 533 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LF+++ Sbjct: 534 ANGAVDV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPVLGHLFKST 592 Query: 402 RFNREETEIFIAATPFLVK 420 E+ + + P +++ Sbjct: 593 NTQVEKKNLMVFIKPTIIR 611 >gi|94312323|ref|YP_585533.1| type II and III secretion system protein [Cupriavidus metallidurans CH34] gi|93356175|gb|ABF10264.1| general secretory pathway component, cryptic [Cupriavidus metallidurans CH34] Length = 783 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 116/325 (35%), Gaps = 47/325 (14%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------------- 236 A QV ++ I EV + Q+G Q +S G + FA G Sbjct: 422 ARRAQVYIESMIVEVSGTLDSQLGIQWQGLINSGGNTVGFAGTNFGTGGQNIINLTAAAA 481 Query: 237 --------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 V + G ++ + +LHAL + T++ L+ P L + Sbjct: 482 LYNQNKTAGLAAISGLVPDVGGLNLGVINKAIGLGALLHALGQNTSVNLLSTPNLITLEN 541 Query: 283 QSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + A G T S + T + D G+ L P + G + ++I Sbjct: 542 EEAKILIGQNIPITTGSYAQTGSSTSVTPFQTFDRKDVGITLRVRPQISEGGLVKMQIYQ 601 Query: 335 EVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 E S+ G P+ VR +T V + G IVL GL++D+ + +PLL IP Sbjct: 602 ESSQVAPGTLTNPQGPTTNVRSIETNVLVDDGQIIVLGGLIEDNYGDNVQKVPLLGDIPY 661 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD---------DHYSVEDDAKAFF 444 LG+LFR R +T + + P++++ D D ++ + Sbjct: 662 LGSLFRYENKTRSKTNLLVFLRPYVMRTTTATDRLTQDRYDFIRGQQQNFVSPNMVVREL 721 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAI 469 V A V+ Y G + Sbjct: 722 NTPVLPPADAPTAPFVD-PRYNGPV 745 >gi|158521417|ref|YP_001529287.1| type II and III secretion system protein [Desulfococcus oleovorans Hxd3] gi|158510243|gb|ABW67210.1| type II and III secretion system protein [Desulfococcus oleovorans Hxd3] Length = 538 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 106/271 (39%), Gaps = 32/271 (11%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS----------ITGSSSGPSKSFAADFGGKFVS 240 QV ++ I E +D +Q+G Q TG++ GP+ D G V+ Sbjct: 259 RPTRQVLIEAHIVETSKDTARQLGIQWGGVAKDKQHSWFTGATEGPAGQTLFDANGVPVA 318 Query: 241 EGGDFSVKGVL------------------DRFSFETVLHALERATAIRTLAEPTLTAISG 282 + + L ALE + L+ P++T + Sbjct: 319 ANPTGNWAANFPASLGNTGLSLGYIYQDLGQSLIAAQLTALEEDGKLNILSSPSITTLDN 378 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG--RIGLRIQTEVSEPV 340 +A SG ++TV ++ + L TP ++ R+ ++ + + Sbjct: 379 SAAVIESGRDVPFQTV--EDNEVNIEWKKAVLSLAVTPHIIDASTLRVKIKTHKDELDWS 436 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 V P+ + A+T + L G T V+ GL K Q + G+PLL +IPILG FR+ Sbjct: 437 NAVLTDGNPTIITKNAETEMILFDGQTTVIGGLNKQSSSQSQFGVPLLGRIPILGFFFRS 496 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + + + E+ I TP +++P + D Sbjct: 497 TSRSNDMEEVLIFITPHILEPYTAATGAGAD 527 >gi|109896501|ref|YP_659756.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas atlantica T6c] gi|109698782|gb|ABG38702.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas atlantica T6c] Length = 550 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 99/249 (39%), Gaps = 23/249 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L+ I EV Q G + ++SG + S A G +S Sbjct: 279 RQVILEARILEVSLSDGYQQGINWTEVLANSGSTDFQFSTTAGSLGDAISASLGGITSLS 338 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302 F VL+ L+ ++ L+ P +TAI+ Q A G + T SS Sbjct: 339 FVNKDFSGVLNLLQTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSQSTVTAATS 398 Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PS 350 +T G+ L TP + + G + L + V E + + Sbjct: 399 STTPNIELTPFFSGIALDVTPQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLAA 458 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT + SG +V+ GL++ I + + PLL IP+LG LF+N + + E+ Sbjct: 459 SNIRESDTIIHARSGEIVVIGGLMQSIISETESKTPLLGDIPLLGNLFKNRQETETKKEL 518 Query: 411 FIAATPFLV 419 I P +V Sbjct: 519 VILLRPTVV 527 >gi|2506491|sp|P31701|GSPD_PECCC RecName: Full=General secretion pathway protein D; AltName: Full=Pectic enzymes secretion protein outD; Flags: Precursor Length = 650 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 101/263 (38%), Gaps = 25/263 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 ++V+ L+I QV ++ IAEV+ +G Q + + + Sbjct: 323 EQVIAQLDIRRP-QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGA 381 Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + GG + + ++ ++ AL + LA P++ + Sbjct: 382 DQFRRDGTLGTAATTALGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNME 441 Query: 285 ASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 A+F G + +T S +V G+ L P + + L I+ EVS Sbjct: 442 ATFNVGQEVPVLAGSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVA 501 Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + ++ R + V + SG T+V+ GLL + +PLL IP+LG L Sbjct: 502 DAASSSSTNLGATFNTRTVNNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYL 561 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 FR++ ++ + + P +++ Sbjct: 562 FRSNSTETKKRNLMLFIRPSIIR 584 >gi|118497727|ref|YP_898777.1| Type IV pili secretin component [Francisella tularensis subsp. novicida U112] gi|194323699|ref|ZP_03057475.1| type IV pilus secretin PilQ family protein, putative [Francisella tularensis subsp. novicida FTE] gi|82453010|gb|ABB76143.1| PilQ [Francisella novicida] gi|118423633|gb|ABK90023.1| Type IV pili secretin component [Francisella novicida U112] gi|194322063|gb|EDX19545.1| type IV pilus secretin PilQ family protein, putative [Francisella tularensis subsp. novicida FTE] Length = 594 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 71/420 (16%), Positives = 154/420 (36%), Gaps = 38/420 (9%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84 P A + + + +++ ++ + + +D+++V P ++V+ S Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 L K + + + L++ +R + + + FI + + Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292 Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + +G + + + S A + T + K+V+N ++I DQV ++ Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------------EGGD 244 I EV R ++GF + + S + + Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPGPTPTPVDTFVGTTA 409 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + + + ALE + +A P L + Q A F G+ + ++++GA Sbjct: 410 KLMYTIAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGA 468 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTT 359 +V + + L TP + G I + I + P + R+ T Sbjct: 469 AAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTK 528 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++ Sbjct: 529 VMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 588 >gi|168750719|ref|ZP_02775741.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4113] gi|168757329|ref|ZP_02782336.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4401] gi|168763015|ref|ZP_02788022.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4501] gi|168769207|ref|ZP_02794214.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4486] gi|168769317|ref|ZP_02794324.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4486] gi|168776690|ref|ZP_02801697.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4196] gi|168783068|ref|ZP_02808075.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4076] gi|168789906|ref|ZP_02814913.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC869] gi|168802552|ref|ZP_02827559.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC508] gi|195940092|ref|ZP_03085474.1| EtpD [Escherichia coli O157:H7 str. EC4024] gi|254667451|ref|YP_003082137.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359] gi|261225635|ref|ZP_05939916.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK2000] gi|187767920|gb|EDU31764.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4196] gi|188015158|gb|EDU53280.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4113] gi|188999508|gb|EDU68494.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4076] gi|189355641|gb|EDU74060.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4401] gi|189361611|gb|EDU80030.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4486] gi|189361663|gb|EDU80082.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4486] gi|189366756|gb|EDU85172.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4501] gi|189370555|gb|EDU88971.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC869] gi|189375476|gb|EDU93892.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC508] gi|254595803|gb|ACT75163.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359] gi|320187907|gb|EFW62576.1| General secretion pathway protein D [Escherichia coli O157:H7 str. EC1212] gi|326337158|gb|EGD60994.1| General secretion pathway protein D [Escherichia coli O157:H7 str. 1125] gi|326347656|gb|EGD71374.1| General secretion pathway protein D [Escherichia coli O157:H7 str. 1044] Length = 650 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 21/269 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + V++ L+I QV ++ IAE++ +G Q + S Sbjct: 319 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 377 Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + + + ++ +L AL ++ LA P++ Sbjct: 378 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 437 Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + A+F G + + S +T +V G+ L P + + L I+ Sbjct: 438 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 497 Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS + + ++ R + + +G T+V+ GLL I+ + +PLL I Sbjct: 498 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDI 557 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P+LG LFR + + + P +++ Sbjct: 558 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 586 >gi|90412971|ref|ZP_01220969.1| putative MSHA biogenesis protein MshL [Photobacterium profundum 3TCK] gi|90325986|gb|EAS42425.1| putative MSHA biogenesis protein MshL [Photobacterium profundum 3TCK] Length = 559 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 119/312 (38%), Gaps = 35/312 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 ++E ++ G RTI S +A + + ++ + SKK + Q Sbjct: 232 QLEKAVQAMIGSGEGRTIVVSPQASLISVRAYPNELREVKEFLGVSKK-------RLKRQ 284 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS------KSFAADFGGKFVSEGGDFSVKG 249 V L+ I EV Q G S SS G + AA GG +S Sbjct: 285 VVLETKIMEVTLSDGYQQGVNWSNITSSIGGTDIIFGRTGPAALPGGDAISSLLGGQTNV 344 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------- 302 + +FE VL LE + L+ P +TA + Q A GG + T S Sbjct: 345 TISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSGDNS 404 Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-------- 351 +T G+ L TP + G + L + V E V D+ + Sbjct: 405 TSAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKDIDLGATFGVYKLPL 464 Query: 352 ---RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +R++D+ + SG +V+ GL+K I +P L IP LG LFRN + +T Sbjct: 465 AKSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVQSKT 524 Query: 409 EIFIAATPFLVK 420 E+ I P +V Sbjct: 525 ELVILLKPTVVD 536 >gi|114045976|ref|YP_736526.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7] gi|113887418|gb|ABI41469.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7] Length = 561 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 23/297 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L ++ ++ V + L + +N + QV L+ I EV Sbjct: 241 TLSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEV 300 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261 Q G Q G + G +S+ S+ GV F T++ Sbjct: 301 TLSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMIS 360 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311 L+ + L+ P +TA + Q A G + T S +T +T Sbjct: 361 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFF 420 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVEL 362 G+ L TP + G + L + V + + S +R++DT + Sbjct: 421 SGIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRA 480 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +V+ GL+K + ++ +PLL IP++G LF+N +++TE+ I P +V Sbjct: 481 ASGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537 >gi|114561562|ref|YP_749075.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400] gi|114332855|gb|ABI70237.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400] Length = 682 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 26/283 (9%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ + + + + V L+ + QV ++ + V+ D+ + +G + I Sbjct: 397 SVAVDERTNTLLVKDTAEILENVHRLIEVLDIPIKQVLIEARMVTVKDDVSEDLGIRWGI 456 Query: 220 TGSSSGPSKSFAADFGGKFVSEGG---------------------DFSVKGVLDRFSFET 258 T S + F V + D + Sbjct: 457 TDQQGSKGTSGTIGGATSIANGTIPSIDDRLNVNLPAAASSATSIAFHVAKLADGTVLDL 516 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 L ALE+ +A P +T + +SA G + Y +SS GAT+VT + L Sbjct: 517 ELSALEQENKGEIIASPRITTSNQKSAYIEQGVEIPYVESASS-GATTVTFKKAVLSLRV 575 Query: 319 TPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + R+ L ++ + G+ + ++ T V + +G TIVL G+ + Sbjct: 576 TPQITPDDRVILDLEITQDSQGTTVATATGEAVAIDTQRIGTQVLVDNGETIVLGGIYQQ 635 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++ +P+L IP++G LFRNS E E+ I TP +V Sbjct: 636 NLISRVSKVPVLGDIPLVGFLFRNSTDTNERQELLIFVTPKIV 678 >gi|294339205|emb|CAZ87559.1| Putative Type IV pilus biogenesis secretin PilQ [Thiomonas sp. 3As] Length = 746 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 63/354 (17%), Positives = 116/354 (32%), Gaps = 49/354 (13%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN- 174 + A + L V+L G+ + + R + T L+ N Sbjct: 393 NYQKAATVVAMLTGAAGGVQSGTTATPSPVLLPGLSSSAAPTSRILSPRGTVLADPRTNQ 452 Query: 175 ---QYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 S ++V L+ + QV ++ I E + +G + ++ + Sbjct: 453 IFVTDIPSKLEEVAQLIAKIDKPVRQVMIEARIVEASDQFGRSLGVKLGFLNNNLPGTGG 512 Query: 230 FA----------------------------------------ADFGGKFVSEGGDFSVKG 249 S+ Sbjct: 513 NTPGVSVSGDYLGVSQQTGQNNATGATVTDSQFVNLPAFGLAGSLLAGATPSSLGISLFN 572 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 L A+E + ++ P + A+ G + Y+ +SS GAT+VT Sbjct: 573 AAANRFINLELSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-GATAVTF 631 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + L TP + G + + E+ + G + +PS T V++ +GGT+V Sbjct: 632 KKAVLSLDVTPQITPDGNVIM--NVEIHKDSPGASTAGVPSINTNTVATQVQVENGGTVV 689 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 L G+ Q + +PLL IP+LG LF+N+ + E+ + TP +V Sbjct: 690 LGGIYTSQEQNQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFLTPKIVTSAD 743 >gi|307825428|ref|ZP_07655647.1| general secretion pathway protein D [Methylobacter tundripaludum SV96] gi|307733603|gb|EFO04461.1| general secretion pathway protein D [Methylobacter tundripaludum SV96] Length = 712 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 61/305 (20%), Positives = 118/305 (38%), Gaps = 22/305 (7%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 V + + + +++ + Q V+ L++ QV + TI V+ Sbjct: 393 EVANVGEVRIISDVANNSVIVVATPQEYEVIL-PVIKQLDL-LPLQVLIDATIVSVKLTD 450 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----FSVKGVLDRFSFETVLHALER 265 + G Q + S S A G + + + + +L A Sbjct: 451 SLKYGIQWFLDHGGSSISSGNGAATLGSIATASAAAFTSGGLTAIYNSGIVNALLSAQAN 510 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-------------ATSVTTHDY 312 + ++ P+L ++ Q A G Q +T + + +S+ D Sbjct: 511 KGNVNIISSPSLMVLNNQEAKINVGDQVPIQTGTLGSVVGSGGTTGATTAIQSSIQYKDT 570 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371 GV L TP V + G + + I+ VS V P+ + ++ +++V + TIVL Sbjct: 571 GVTLEVTPRVNANGMVIMDIKQTVSSAVKTETGVNTSPTIQKKEIESSVAVQDSETIVLG 630 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+ ++ GIP L+++P +G LF N+ + E+ + TP +VK + +D Sbjct: 631 GLIDNNNSNAIGGIPWLNELPWIGPLFGNTDRENIKNELVVLITPRVVK--SKQDSRLIS 688 Query: 432 DHYSV 436 D + Sbjct: 689 DEFKR 693 >gi|113971816|ref|YP_735609.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4] gi|113886500|gb|ABI40552.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4] Length = 561 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 23/297 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L ++ ++ V + L + +N + QV L+ I EV Sbjct: 241 TLSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEV 300 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261 Q G Q G + G +S+ S+ GV F T++ Sbjct: 301 TLSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMIS 360 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311 L+ + L+ P +TA + Q A G + T S +T +T Sbjct: 361 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFF 420 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVEL 362 G+ L TP + G + L + V + + S +R++DT + Sbjct: 421 SGIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRA 480 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +V+ GL+K + ++ +PLL IP++G LF+N +++TE+ I P +V Sbjct: 481 ASGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537 >gi|56476093|ref|YP_157682.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum aromaticum EbN1] gi|56312136|emb|CAI06781.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum aromaticum EbN1] Length = 771 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 82/455 (18%), Positives = 164/455 (36%), Gaps = 72/455 (15%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 L + P + A + + + ++ ++ + + PV + V D Sbjct: 171 APLAEALTGPLSKPVTLQFRDAPLRVVFEALSHAAGLNFVFDRDVRVDTPV---TLFVRD 227 Query: 74 PTKADV------------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 + +V V + ++ ++ + + + L D Sbjct: 228 SSVDEVIKLVAVTQQIERKVLNANSVLIYPATPAK-----QRDYQELVTRSFYLANADAK 282 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + L++ + ++ ++ + +V+ +AV L+E L+ Sbjct: 283 QAQSLLKQLVKSKDMFIDEKLNLLVIKDTP-------QAVRLAERLLAS----------- 324 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222 L++A + V L+V + EV R L+++G + G Sbjct: 325 ------LDVAEPE-VMLEVEVLEVARSKLRELGLDFPDEIGYGLLRSQQQITQTQTAAGI 377 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S ++ V + G + + L A LA P + + Sbjct: 378 VSEVVTLPGSEIAPGVVPRAQWGDLTGYVTNPALTLRLRA--EDGDTNLLANPRIRVKNR 435 Query: 283 QSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + A G + T +S+ + SV+ D G+ L P V + +++ EVS Sbjct: 436 EKAKIHIGEKLPVFTTTSTANVGVSASVSYLDVGLKLDVEPAVTLDDEVAIKVALEVSNI 495 Query: 340 V---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 V G + R A T + L +G T VLAGL+ D+ ++ + +P L +P++G Sbjct: 496 VREVPGPSDSLAYQVGTRSATTVLRLRNGETQVLAGLISDEERRSAQRLPGLGDLPLIGR 555 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 LF + R N +TEI + TP +V+ + L+R D Sbjct: 556 LFSSERNNASKTEIVLLITPRIVRNIVAPSLARAD 590 >gi|197336466|ref|YP_002157259.1| general secretion pathway protein D [Vibrio fischeri MJ11] gi|197317956|gb|ACH67403.1| general secretion pathway protein D [Vibrio fischeri MJ11] Length = 678 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 107/293 (36%), Gaps = 46/293 (15%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSS 224 + K V+ L+I QV ++ I E+ +G Q I S++ Sbjct: 321 TAPPDVMRAMKDVIAQLDIR-RAQVLIEALIVELAEGDGVNLGVQWGNLETGAMIQYSNT 379 Query: 225 GPSKSFA--------------------------------ADFGGKFVSEGGDFSVKGVLD 252 G S + + GG + Sbjct: 380 GASIGATMVGLEEAKDTTTTTAVYDENGKFVRNETTTEEGSYDALAGALGGVQGAAVSIM 439 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSV 307 + ++ A+ + L+ P++T + ASF G + T S + +V Sbjct: 440 MGDWAALVTAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSSNDNPFQTV 499 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + G+ L P + + L I+ EVS + A D+ + R+ +T+V + G Sbjct: 500 DRKEVGIKLKVVPQINEGDSVRLDIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVQDGQM 558 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +VL GL+ + + + +P L IP+LG LF+++ E+ + + P +++ Sbjct: 559 LVLGGLIDERALESESKVPFLGDIPVLGYLFKSTSTQVEKKNLMVFIKPTIIR 611 >gi|2853000|gb|AAC38777.1| XqhA [Pseudomonas aeruginosa] Length = 713 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 96/508 (18%), Positives = 170/508 (33%), Gaps = 60/508 (11%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 Q+T + + P+ L + ANA +++ I + + I L++ + Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206 Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D++ V+ A+V+ S GK+ V+ + +L + L Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262 Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166 +L A+S + D L G + + ++ Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAVTLGEIGESLHGERGQDGRGSGKRGLLVRADE 322 Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 L+ + ++ L++ Q+ ++ I E+ +I +G Q ++ Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381 Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 FA G L F ++ AL R + L+ Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441 Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327 P+L + Q A G ++T S SS T+V D GV L TP + Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501 Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ E+S R +TV G IVL GL++DD+Q+ Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSR 561 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP +G LFR+SR R + + + P +V+ A + Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472 R I + A+ + G I Sbjct: 607 HGRYRSIQLLRGAAGEPARPLFEDAGAI 634 >gi|59713081|ref|YP_205857.1| general secretion pathway protein D [Vibrio fischeri ES114] gi|59481182|gb|AAW86969.1| general secretion pathway protein D [Vibrio fischeri ES114] Length = 673 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 114/315 (36%), Gaps = 48/315 (15%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + Q+ + + + + + K V+ L+I QV ++ I E+ Sbjct: 295 SSSQNRNDVMISAHVDTNSLVITAPPDVMRAMKDVIAQLDIR-RAQVLIEALIVELAEGD 353 Query: 210 LKQIGFQHS-------ITGSSSGPSKSFA------------------------------- 231 +G Q I S++G S Sbjct: 354 GVNLGVQWGNLETGTMIQYSNTGASIGATMVGLEEAKDKTTATAVYDENGKFLRNETTTK 413 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + + GG + ++ ++ A+ + L+ P++T + ASF G Sbjct: 414 EGSYDALAGALGGVQGAAVSIMMGDWKALVTAVSTDSNSNILSSPSITVMDNGEASFIVG 473 Query: 291 GQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 + ++ +V + G+ L P + + L I+ EVS + A Sbjct: 474 EEVPVLTGSTSGSNNENPFQTVDRKEVGIKLKVVPQINEGDSVRLDIEQEVSNVLGANGA 533 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 D+ + R+ +T+V + G +VL GL+ + + + +P L IP+LG LF+++ Sbjct: 534 VDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTRV 592 Query: 406 EETEIFIAATPFLVK 420 E+ + + P +++ Sbjct: 593 EKKNLMVFIKPTIIR 607 >gi|10955268|ref|NP_052609.1| EtpD [Escherichia coli O157:H7 str. Sakai] gi|149930769|ref|YP_001294686.1| w0022 [Escherichia coli] gi|37695757|gb|AAR00419.1|AF401292_20 w0022 [Escherichia coli] gi|2598401|emb|CAA70955.1| etpD [Escherichia coli] gi|3337000|dbj|BAA31759.1| Type II secretion pathway related protein [Escherichia coli O157:H7 str. Sakai] Length = 585 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 21/269 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + V++ L+I QV ++ IAE++ +G Q + S Sbjct: 254 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 312 Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + + + ++ +L AL ++ LA P++ Sbjct: 313 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 372 Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + A+F G + + S +T +V G+ L P + + L I+ Sbjct: 373 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 432 Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS + + ++ R + + +G T+V+ GLL I+ + +PLL I Sbjct: 433 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDI 492 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P+LG LFR + + + P +++ Sbjct: 493 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 521 >gi|332184221|gb|AEE26475.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida 3523] Length = 596 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 71/423 (16%), Positives = 154/423 (36%), Gaps = 40/423 (9%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84 P A + + + +++ ++ + + +D+++V P ++V+ S Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 L K + + + L++ +R + + + FI + + Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292 Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + +G + + + S A + T + K+V+N ++I DQV ++ Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------EG 242 I EV R ++GF + + S + + Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPGPTPTPTPVDTFVGT 409 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + + + ALE + +A P L + Q A F G+ + ++++ Sbjct: 410 TAKLAYTIAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATAS 468 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKAD 357 GA +V + + L TP + G I + I + P + R+ Sbjct: 469 GAAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREIT 528 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP Sbjct: 529 TKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPK 588 Query: 418 LVK 420 +++ Sbjct: 589 IIQ 591 >gi|207725091|ref|YP_002255488.1| gspd-related protein [Ralstonia solanacearum MolK2] gi|206590321|emb|CAQ37282.1| gspd-related protein [Ralstonia solanacearum MolK2] Length = 754 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 85/472 (18%), Positives = 161/472 (34%), Gaps = 58/472 (12%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 + + + P E + A + + + ++ +K ++ V V + + T A Sbjct: 176 ALSAAFRKPISLEFHDAQMRQVFEVLSRASGLNFVFDKD--VRTDQKV-TVFLRNSTVAS 232 Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 VV V + ++ + + +L D + T Sbjct: 233 VVNTVLLTNQLEQRVLDGNAILIYPNTPAK-----QRDYQPLTVRTFVLSNSDAKDVANT 287 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L+ + +I V+ + +V+ IQ +++ V + E Sbjct: 288 LKTILKTRDIVVDEKRNMIVMRDTPDAIQAAEKLVAVHEM-------------------- 327 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 E +V L+V I EV+R L+ +G Q S + + S + Sbjct: 328 -----PEPEVMLEVEILEVKRSRLQDLGIQLPSQLSLTPLASSSGGTLTLDDLRHLNPTR 382 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303 + + + ++A LA P + + + A G + T +S+ Sbjct: 383 IGATVSPLNVN--VNAAVTD--TNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGFV 438 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360 A +V D G+ L PTV + +RI EVS+ V + R A T + Sbjct: 439 AENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSIAYEIGTRNATTLL 498 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G +LAGL++D+ + +P L IP LG LF N+ ++EI ++ TP +++ Sbjct: 499 RLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRVIR 558 Query: 421 PVAMRDLSRPDDHYSVEDDAKA---FFFNRVNKIYGPKEASEVEGQNYKGAI 469 P +L + E + R P + Sbjct: 559 PAQRPNLGSAEFDSGTESSLRLKSSMLHERSEPAPNPVAPGAAPTPSTDATA 610 >gi|317051459|ref|YP_004112575.1| general secretion pathway protein D [Desulfurispirillum indicum S5] gi|316946543|gb|ADU66019.1| general secretion pathway protein D [Desulfurispirillum indicum S5] Length = 638 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 91/479 (18%), Positives = 167/479 (34%), Gaps = 84/479 (17%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 L+ T + L P L + ANA +I+ + + I L++ Sbjct: 134 LRNTPAAELIPILRPLVPQYGHLAGVPSANAIIISDHAENVSRIADIVDRLDQ------- 186 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ---------MLNLDI 114 + + + + D A V G+ G I G+Q ++ + Sbjct: 187 EESEAIAIVDLQHAWV-----------GQLAGLLEKIATPQGGQQQRSPAAGIRIIADER 235 Query: 115 LIERDIAHLEMTL---RRFIADSNIRVEMVSDTVVL------------------------ 147 + + L R+ I +I V+ T+VL Sbjct: 236 SNRLILKGTQKALEEYRQLIDSLDIPVKTTGSTMVLRLSHADATKMAELLKGLVEGRTAS 295 Query: 148 ---HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTI 202 G +++ ++ L+ + ++ ++ L++ QV ++ I Sbjct: 296 ASGSGRDSAPAPAEKFSIQADESLNALVIRAEPATMAEIQSIIAQLDVR-RAQVLIEAVI 354 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-----------------KFVSEGGDF 245 EV D L Q+G Q + + F +S+G Sbjct: 355 VEVVGDSLNQLGVQLAARSAGDTLGPIGGTSFSNAGTSLSNILTSIATQTPPTISDGMSL 414 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSS 300 V +L AL T L+ P++ + Q AS G Y S Sbjct: 415 GVATTSGSVEMGALLTALASVTNANLLSTPSILTLDNQEASILVGQNIPVRTGTYSHDSG 474 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + T++ D G+VL TP++ + ++++ E S + D R+ TT+ Sbjct: 475 TNPFTTIQRQDVGIVLKTTPSIYEGNSVRMQVELEASSVL--TEGTDGIITNKREIITTI 532 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + TIVL GL+KDD+Q++ +PLL IP+LG LF+ R E+ + + P ++ Sbjct: 533 LADNNETIVLGGLIKDDVQEVVSKVPLLGDIPLLGRLFQARRQRVEKRNLLVFLRPTIL 591 >gi|206558684|ref|YP_002229444.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315] gi|198034721|emb|CAR50588.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315] Length = 541 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 74/447 (16%), Positives = 148/447 (33%), Gaps = 57/447 (12%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 + P++ P A + + + + G + + + + + + A Sbjct: 78 APGPALEGPPIPLAPPARMSDAAARQPGDA-------DDARRISLNLQGVGLAAAFDAIA 130 Query: 78 DVVVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAH------LEMTLRRF 130 + + G+ V G + L ++ + + + Sbjct: 131 RFTGLN----IVVGEQVRGTVTLRLNNVRWREAFDTLLDMHGLAMSRRGNVIWVTPAAEL 186 Query: 131 IADSNIRVEMVSDTVVLHGMVRTI-----QDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 A R +M + L + +Q L Q ++ +++ Sbjct: 187 AARERERFDMHARAADLEPLASRTFMLHYPRAQDVQRLLAGATGQRLLSKRGAAAADPRT 246 Query: 186 NLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 NLL + QV ++ I E + + +G + ++ PS Sbjct: 247 NLLFVTDLAPRIVQIAGLIDAIDRPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPS 306 Query: 228 K-------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 AA G F + F++ + L ALE + ++ Sbjct: 307 AEGTSFTADARNALDLAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSR 366 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + A G + Y+ G + V + L P + GR+ L + Sbjct: 367 PRVVTADRVKAIVEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL-- 423 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +V++ +G P+ + T VE+ +GGT+ + G+ + + +PLL KIPIL Sbjct: 424 DVTKDSVGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPIL 483 Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421 GALFR+ + E+ + TP +V P Sbjct: 484 GALFRHRAQRDQRNELVVFITPTVVDP 510 >gi|269103980|ref|ZP_06156677.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae subsp. damselae CIP 102761] gi|268163878|gb|EEZ42374.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae subsp. damselae CIP 102761] Length = 583 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 62/413 (15%), Positives = 148/413 (35%), Gaps = 32/413 (7%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 + + + ++ ++ + V + + D V P D+++ S L Sbjct: 176 FQDVPVRNVLQLVAEYNDFNLVVSDTVQGNVTLRLDD--VPWPQVLDIILQSKG---LDK 230 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + G +I + ++ +R L I + + ++D ++ Sbjct: 231 RVQGSVVLIAPKSELATNERQEMEAKRKEDELASLRSELIQINYAKAGDIADLLLGTKDG 290 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 ++ + ++ + E + ++ + S ++++ L+I + QV ++ I V + Sbjct: 291 VSMLSQRGSLHVDERTNAIIIKDIPESIDSIEEIITALDIPVK-QVQIEARIVTVDEGDI 349 Query: 211 KQIGFQHSITGSSSGPSKS----------------------FAADFGGKFVSEGGDFSVK 248 ++G + + + + + G Sbjct: 350 DELGVRWGVVNQNGSTTIGGSIEGNLASSGLLGDDATVDDFLNVNLGAITPGASSIAFQV 409 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 L + L AL+ + ++ P L + + A++ G + ++S+GA SV Sbjct: 410 AKLGDILLDLELSALQAESKAEIISSPRLVT-TNKKAAYIEQGTEIPYLEAASSGAVSVD 468 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGG 366 + L TP + ++ L + + G+ + ++ T V + +G Sbjct: 469 FKKAVLSLMVTPQITPDDKLVLDLLVTQDKVGETVVTGTGEAVAIDTQRIGTQVLVNNGE 528 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T+VL G+ + + +PLL IP LG LFR+ + E+ I TP ++ Sbjct: 529 TVVLGGIYQHQVNNSVRKVPLLGDIPGLGVLFRHKLQEMGKRELLIFVTPKII 581 >gi|207744652|ref|YP_002261044.1| general secretory pathway protein d [Ralstonia solanacearum IPO1609] gi|206596059|emb|CAQ62986.1| general secretory pathway protein d [Ralstonia solanacearum IPO1609] Length = 777 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235 A QV ++ I EV D Q+G Q + +FG Sbjct: 401 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 460 Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G VS + +L AL ++ L+ P Sbjct: 461 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 520 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G T S + T + D G+ L P + G + Sbjct: 521 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLV 580 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++I E S V G NA P+ VR +T V G IVL GLL+D+ Q ++ +P Sbjct: 581 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 640 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 L IPILGALFR+ R++T + + P++++ A + D+ Y Sbjct: 641 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 686 >gi|323135898|ref|ZP_08070981.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242] gi|322398989|gb|EFY01508.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242] Length = 817 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 18/260 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V+ L++ +QV L+ TIAEV+ + + G + + + S +A+ G + Sbjct: 510 QVIETLDV-MPNQVFLEATIAEVKLNDTLRFGVRWFMQTHQNLFGFSSSANPAGPLPNTP 568 Query: 243 GDFSVKGVLDRFSF------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 ++ G +F + L+AL T + + P+LT + + A G Sbjct: 569 LGTNLLGANVGANFPGFAYAFRAFNQQVTLNALNAITEVNVIQTPSLTVLDNRQAMLQVG 628 Query: 291 GQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 Q +T+SS SV + GV+L TP + GRI L ++ EVS G Sbjct: 629 DQIPVQTLSSVSAIGNQFNSVNYTNTGVILAITPHISESGRIMLELEQEVSNVDPNTPPG 688 Query: 347 DM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + P+ + R+ T V + +++L GL+KD + IP+ +P+ G LF++ Sbjct: 689 SITPTIQQRRVKTQVVVNDSESLMLGGLVKDQRGRAATQIPVAGDVPVFGNLFKDKGDAV 748 Query: 406 EETEIFIAATPFLVKPVAMR 425 ++TE+ I TP +V+ + Sbjct: 749 DKTELVIMITPHVVRSLDEG 768 >gi|153840376|ref|ZP_01993043.1| general secretion pathway protein D [Vibrio parahaemolyticus AQ3810] gi|149745960|gb|EDM57090.1| general secretion pathway protein D [Vibrio parahaemolyticus AQ3810] Length = 552 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 69/454 (15%), Positives = 153/454 (33%), Gaps = 84/454 (18%) Query: 49 KISIGLNKVIIL-QVPVDVQDV-LVSDPTKADVVVHSPRT---MYLFGKNVGQAN----- 98 I + + ++ ++ ++ V D V + + + + N Sbjct: 39 NIILITGRAAVVNRLAEIIKRVDQAGDKEIELVELRNASAAEMVRIVEALNKTTNQKSTP 98 Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145 ++ +++ D + + L L +A ++ D V Sbjct: 99 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 158 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190 VL G+ +Q ++A + + + A+ ++ V++ L+I Sbjct: 159 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 218 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------------- 219 QV ++ I E+ +G Q Sbjct: 219 R-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAVIQYGNTGAPIGQVMVGLEEAKDVTK 277 Query: 220 --------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 T + D+ + GG + + ++ A+ + Sbjct: 278 TESYWNSDTNKWENRQYTEEGDYSTLASALGGVNGAAMSIVMGDWTALISAVASDSNSNI 337 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPG 326 L+ P++T + ASF G + T ++ +V + G+ L P + Sbjct: 338 LSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGD 397 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + +P Sbjct: 398 SVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVP 456 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 LL IP+LG LF+++ E+ + + P +++ Sbjct: 457 LLGDIPVLGHLFKSTSTQTEKRNLMVFIKPTIIR 490 >gi|88705191|ref|ZP_01102902.1| GSP-D family Protein [Congregibacter litoralis KT71] gi|88700281|gb|EAQ97389.1| GSP-D family Protein [Congregibacter litoralis KT71] Length = 728 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 36/291 (12%) Query: 163 LSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + E + + + ++ ++++ ++I QV ++ I + D+ K++G Q Sbjct: 434 IVEARTNSLIVTETSAKLAEIRELIDRVDIPIR-QVMIESRIVIAQSDLEKELGIQWGGG 492 Query: 221 GSSSGPSKSFAADFG-----------------------------GKFVSEGGDFSVKGVL 251 + + + G S F+V Sbjct: 493 YLEPDANGNILSVTGDATNAVNLNNSVINGTQPDLSYPGALLVDLGSGSATSGFAVGFTS 552 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 L ALE A +++P + Q A+ SG + ++ ++S GAT+V + Sbjct: 553 SELFLTAELSALEAAGKSEVVSQPKVITGDKQPATIKSGTEIPFQQAAAS-GATAVQFKE 611 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + L TP + RI L + V + V G +P+ + T V + +G T+ Sbjct: 612 AVLKLDVTPNITPDDRILLDLVINQDSVGDLVPSGQGGLIPAIDTTQLTTQVLVGNGETV 671 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + + +P +P +GALFRN R +TE I TP ++ Sbjct: 672 VLGGVFRTENLETTSKVPFFGDLPYVGALFRNESSQRTKTETLIFITPRIL 722 >gi|262370143|ref|ZP_06063470.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262315182|gb|EEY96222.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 785 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 101/268 (37%), Gaps = 31/268 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L+ QV ++ TI EV + Q+G Q ++ SSG + G S Sbjct: 372 ESAIQQLDTR-RQQVLIEATILEVEGNDADQLGVQWAMGDLSSGVGIINFDNIGSSLKSI 430 Query: 242 GGDFSV-----------------------KGVLDRFSFETVLHALERATAIRTLAEPTLT 278 ++ R + ++ AL+ T L+ P++ Sbjct: 431 AANYLTGGGAGAASAIGAGGSLILGDYKEGSDGSRQLYGAMIQALKSNTKSNLLSTPSIV 490 Query: 279 AISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + A G + T S S T++ D GV L P + G I L Sbjct: 491 TMDNEEAYIVVGENVPFVTGSVSTTSSGTANPYTTIERKDVGVTLKVVPHIGEGGTIRLE 550 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 I+ EVS+ R T+V G TIVL GL+ D+ ++ IP L I Sbjct: 551 IEQEVSDVKANKGQAQDLVTSKRAIKTSVLAEHGNTIVLGGLISDNTSYSRQSIPGLGAI 610 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P LG LFR+ + ++ + + P +V Sbjct: 611 PGLGRLFRSDGKSDQKRNLLVFIHPTIV 638 >gi|238797288|ref|ZP_04640789.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969] gi|238718925|gb|EEQ10740.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969] Length = 406 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 72/380 (18%), Positives = 137/380 (36%), Gaps = 31/380 (8%) Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 V V AD + + + G ++ L+ +Q L + + + A E + Sbjct: 31 VSVVLQALADYQQLN---LVVAAGVSGNISLRLVDVPWEQALAIILRMGHLKAEREGAVM 87 Query: 129 RFIADSNIRVEMV-SDTVVLHGMVRT---IQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 + +I ++ + + A ++E+ + + + K Sbjct: 88 MVFTEQDIEERQQRAEQKAAPDSMSSLTLALQHADAEHVAESLEEGGLLSPLGSVVADKR 147 Query: 185 MNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 N L I Q+ L I + R+ L+++G + + Sbjct: 148 TNTLLIRDTPASLAILKGWLAEMDLPLQQIQLAAHIVTMSRENLQELGVRWGMGEPPHTT 207 Query: 227 S---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S F + + F+V + R + ALE+ + +A P L A Q Sbjct: 208 SLRVNDFNVNLPLANSAVSAGFNVARIGGRLLELEL-SALEQENQVDIIASPRLVASHQQ 266 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +AS G Y GA S+ + + + TP +L G+I L ++ + P + + Sbjct: 267 TASIKQGSDIPYTVSRGEKGAASIEFKEAVLGMEVTPKILRNGKITLNLKISQNMPGMTI 326 Query: 344 --NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + ++ T + + G TIVL G+ + Q +P+L+ IP LGALF+ Sbjct: 327 KRGDTEALLIDKQEIKTQITVNDGETIVLGGIFQQKNSQAVNKVPILADIPWLGALFKQD 386 Query: 402 RFNREETEIFIAATPFLVKP 421 + E+ I TP L+ Sbjct: 387 AQQQNRRELVIFITPRLISA 406 >gi|304412646|ref|ZP_07394250.1| general secretion pathway protein D [Shewanella baltica OS183] gi|307307256|ref|ZP_07586993.1| general secretion pathway protein D [Shewanella baltica BA175] gi|304348990|gb|EFM13404.1| general secretion pathway protein D [Shewanella baltica OS183] gi|306910311|gb|EFN40743.1| general secretion pathway protein D [Shewanella baltica BA175] Length = 704 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 65/303 (21%), Positives = 111/303 (36%), Gaps = 45/303 (14%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + +ET + + V+N L+I QV ++ I EV G Q + Sbjct: 315 IMAHAETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAS 373 Query: 220 TGSSSGPSKSFAADFG-------------GKFVSEGGDF--------------------- 245 G + G G V G + Sbjct: 374 KGGLGTQFNNLGPTIGEIGAGVWAAQPIEGDLVCSGTNLDNCKRNPDKQGDVTLLAQALG 433 Query: 246 ---SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKT 297 + + F ++ A+ T LA P++T + Q ASF G + + Sbjct: 434 KVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTAS 493 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 S+S +V + GV L P + + L I+ EVS S+ R+ Sbjct: 494 SSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRRLT 551 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTV SG +VL GL+ +++Q+ + +P L IPI+G LF++S + + + I P Sbjct: 552 TTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPT 611 Query: 418 LVK 420 +++ Sbjct: 612 IIR 614 >gi|262166741|ref|ZP_06034478.1| type II secretory pathway component PulD [Vibrio mimicus VM223] gi|262026457|gb|EEY45125.1| type II secretory pathway component PulD [Vibrio mimicus VM223] Length = 653 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 50/321 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204 G + + V ++ + S +V+ L+I QV ++ I E Sbjct: 272 KGTGQQTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 330 Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231 + +G Q I ++G S Sbjct: 331 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKRPIRDSNTGAIKY 390 Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D+ + G + + +++A+ + L+ P++T + Sbjct: 391 YEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGE 450 Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 ASF G + T ++ +V + G+ L P + + L I+ EVS Sbjct: 451 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 510 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR Sbjct: 511 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 569 Query: 400 NSRFNREETEIFIAATPFLVK 420 ++ E+ + + P +++ Sbjct: 570 STSSQVEKKNLMVFIKPTIIR 590 >gi|117922096|ref|YP_871288.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3] gi|117614428|gb|ABK49882.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3] Length = 561 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 23/297 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L ++ ++ V + L + +N + QV L+ I EV Sbjct: 241 TLSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEV 300 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261 Q G Q G + G +S+ S+ GV F T++ Sbjct: 301 TLSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMIS 360 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311 L+ + L+ P +TA + Q A G + T S +T +T Sbjct: 361 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFF 420 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVEL 362 G+ L TP + G + L + V + + S +R++DT + Sbjct: 421 SGIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRA 480 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +V+ GL+K + ++ +PLL IP++G LF+N +++TE+ I P +V Sbjct: 481 ASGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537 >gi|258625707|ref|ZP_05720586.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603] gi|258581945|gb|EEW06815.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603] Length = 571 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 116/309 (37%), Gaps = 28/309 (9%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + ++ + G V + + T + ++++ L+I + QV Sbjct: 263 KASDIAAMIGGEGNVNMLSERGTISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 321 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------------- 235 ++ I V+ L ++G + + ++ S + Sbjct: 322 QIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVN 381 Query: 236 ---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + F V + + L AL+ + ++ P L + Q A G + Sbjct: 382 LASASANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 441 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350 Y SS+GAT+V+ + L TP + R+ L + + G+ S Sbjct: 442 IPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 500 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ Sbjct: 501 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 560 Query: 411 FIAATPFLV 419 I TP +V Sbjct: 561 LIFVTPKVV 569 >gi|206891200|ref|YP_002248265.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743138|gb|ACI22195.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347] Length = 663 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 60/352 (17%), Positives = 122/352 (34%), Gaps = 36/352 (10%) Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADS-----NIRVEMVSDTVVLHGMVRTIQDSQR 159 +G + + I ++ LE + + I V + + G + + Sbjct: 310 EGNIIRIAPVKIFQEEKKLEAETKDLFKKAEDEQIRIFVLKYASVDKVKGTIEAAKILSP 369 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQH 217 +S +++ + S + L+ Q+ L+ I E+ K +GF+ Sbjct: 370 KGTISTDERTRTVIIRDIPSVLGHIARLVADLDKPTRQILLEARIIEMSSSFSKSLGFEW 429 Query: 218 SITGSSSGPSKS-------------------------FAADFGGKFVSEGGDFSVKGVLD 252 I G + G S F++ + Sbjct: 430 GIQWYPPGTRTTIVGSVGAAAGSSASSVPGGTAPLAINLPASTGNVTSPTTAFTIGYLNP 489 Query: 253 RFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + + + AL+++ + ++ P + + Q A G Y +G S Sbjct: 490 SQTIALDLRISALQQSGKGKVISNPKVITLDNQKAKIVQGASIPYGEKDVQSGQISTKFK 549 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTI 368 D + + TP ++ + L + + V VN G + P + +T V L G T+ Sbjct: 550 DVAITVEATPHLIDDKSMLLDVSVIKEDLVEFVNIGGVYAPRTTKIEGNTKVSLKDGETL 609 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 V+ G+ K + +P L +P+LG LF++ + E+ I TP ++K Sbjct: 610 VIGGIYKKTDSLTESKVPGLGDVPLLGELFKSRGRDETLYEVMIFVTPRILK 661 >gi|296314608|ref|ZP_06864549.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768] gi|296838653|gb|EFH22591.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768] Length = 505 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 103/260 (39%), Gaps = 23/260 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232 K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 239 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEG 297 Query: 233 D---------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + S+ + + L A E + +TLA P + + + Sbjct: 298 GDGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 357 Query: 284 SASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + Y+ SSS ++S T + L TP + G+I + ++ PV Sbjct: 358 EAKIESGTEIPYQDTSSSGSSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPVD 417 Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 V + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 418 CTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFKT 477 Query: 401 SRFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 478 RGKSTNRRELLIFITPRIMD 497 >gi|296159579|ref|ZP_06842403.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1] gi|295890287|gb|EFG70081.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1] Length = 585 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 75/433 (17%), Positives = 144/433 (33%), Gaps = 43/433 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P V P + + K +S+ + + V A Sbjct: 162 GPPVPLPPLARLSGEPHGAADPSLAPDDKPLSLNFQRAELGAVLNAFSR-FTGLNIVASE 220 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ +G M + +++ IA L R+ Sbjct: 221 RVRGAVSLRLDKVPWRIAFDTLLDVNGLAMERHGNVIWVAPIADLAARERQRF------- 273 Query: 139 EMVSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--- 190 E + L + + ++ L +Q ++ +++ NLL + Sbjct: 274 EAHARAADLEPLASRTFELHYAHAEDVRRLLTGSGAQRVLSKRGAATADPRTNLLFVTDL 333 Query: 191 ---------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 QV ++ I E + +G + S+ S++ + D Sbjct: 334 EARLAQIAALLTSVDRPTRQVLIEARIVEGEHGFSRNLGVKLSMAASNADGTAKGLTDAA 393 Query: 236 --------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 F + ++ L ALE ++ P + A Sbjct: 394 YDLSARPIAGFDAATAGLTLFAAGATRLLNIELSALEAQGRGEIVSSPRVVTADRMKAVV 453 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P ++ GR+ L + +V++ +G Sbjct: 454 EQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDA 510 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ GGT+ + G+ D + +PLL KIP+LGALFR+ Sbjct: 511 GPAINTKHVQTRVEVEDGGTVSIGGIYATDDRDDVTQVPLLGKIPVLGALFRHRAHRDRR 570 Query: 408 TEIFIAATPFLVK 420 +E+ + TP +V+ Sbjct: 571 SELAVFITPRVVQ 583 >gi|288942699|ref|YP_003444939.1| general secretion pathway protein D [Allochromatium vinosum DSM 180] gi|288898071|gb|ADC63907.1| general secretion pathway protein D [Allochromatium vinosum DSM 180] Length = 733 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 122/298 (40%), Gaps = 17/298 (5%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILK 211 + +V + ++ S + + KK+++ L QV ++ TI E+ Sbjct: 429 ELEMSSSVNIVADAVNNSLLVRASPRDYKKILDALKQLDILPLQVLVEATIVEITLSGSL 488 Query: 212 QIGFQHSITGSSSGP------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + G Q + G + +F + F+ V + + + L AL Sbjct: 489 KYGVQWELFGPGADGKSFASLDGTFDDAETSGIGTMFPGFNWAMVSNPDTIKATLSALAG 548 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGVVLHFT 319 + L+ P++ + Q+A G + T +T+ ++ D GV+L Sbjct: 549 DNLLNVLSSPSVMVMDNQTAKIQVGREVPIATSKQDGTSTTDRTYTTISYKDTGVILTVK 608 Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P V G + L I+ EVS + + PS++ R ++V + S +VL GL++D Sbjct: 609 PRVTPGGLVQLEIEQEVSTVFEENASGLNSPSFKKRTITSSVAVRSNQAVVLGGLIEDTR 668 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 K+GIP L +P++G LF + + TE+ + TP ++ +D+ + + Sbjct: 669 SDGKQGIPGLYSLPVVGGLFGETSKSSTRTELVVVLTPKVI--ANDQDIESVTEDFRQ 724 >gi|218782642|ref|YP_002433960.1| type II and III secretion system protein [Desulfatibacillum alkenivorans AK-01] gi|218764026|gb|ACL06492.1| Type II and III secretion system protein [Desulfatibacillum alkenivorans AK-01] Length = 566 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 116/285 (40%), Gaps = 44/285 (15%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------GSSSGP 226 ++N L+ QV +K I E RD + +G Q G +SG Sbjct: 268 LINKLD-RPPYQVHIKANIVETTRDTARDLGVQWGWMYGRYDSLGNDTDFWLTPGGNSGS 326 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSF------------------------ETVLHA 262 + S A G + + G V G + +F E L A Sbjct: 327 AASRDAPLTGGYTAGTGSKGVSGQGNGINFPVDFEDAMGATMGLMFGKVGSNILEVQLSA 386 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 L A I L+ P++T + Q+AS +G + Y + G V D ++L TP V Sbjct: 387 LADAGKINILSTPSITTLDNQTASTENGTEVPYV-TINEDGDREVKFKDATLMLEITPHV 445 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + G++ +++ + E + N P ++ +T++ + +G T+V++GL K + Sbjct: 446 IDEGQMKMKVSIKKDEVDLSRNVDGNPFILKKRTETSLIVRNGETVVISGLSKTRNTEGD 505 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 GIP L IP LG LF++ + E+ I TP ++ P + Sbjct: 506 TGIPWLKDIPGLGYLFKSESKSEAMEEVLIFLTPTVL-PKPGEAM 549 >gi|332163311|ref|YP_004299888.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667541|gb|ADZ44185.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861918|emb|CBX72088.1| protein transport protein hofQ [Yersinia enterocolitica W22703] Length = 439 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 74/402 (18%), Positives = 140/402 (34%), Gaps = 47/402 (11%) Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL------IGHDGKQ 108 NK + L+ V++ AD + + ++G N+ L Sbjct: 50 NKPVSLEFQDVPASVVLQ--ALADYQQLN----LVIASDIG-TNLSLRLVDVPWDQALAI 102 Query: 109 MLNLDILIERDIAHL------EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 +L + L + + + R + V + L ++ ++ Sbjct: 103 VLRMSHLKVEREGAVMLVFTEQDSEERRLRAEQKTVPESLSNLSLALQYANAEEVADSLN 162 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAE 204 L+E + + K N L I QV L I Sbjct: 163 LAE----GGLLSPLGSVVVDKRTNTLLIRDTPASLALLKNWLAEMDLPLQQVQLAAHIVT 218 Query: 205 VRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + R+ L+++G + + + S +F + + F+V + R + Sbjct: 219 MSRENLQELGVRWGMGDTKPTSSLRMSNFNVNLPLPNSAISAGFNVARIGGRLLELEL-S 277 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 ALE+ I +A P L Q+AS G Y GAT++ + + + TP Sbjct: 278 ALEQENQIDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPK 337 Query: 322 VLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 +L G+I L ++ + P + + + ++ T + + G TIVL G+ + Sbjct: 338 ILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSS 397 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P+L+ IP LG LF+ + E+ I TP L+ Sbjct: 398 HGLNKVPILADIPWLGGLFKQDARQQSRRELVIFITPRLISA 439 >gi|255021644|ref|ZP_05293686.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus ATCC 51756] gi|254968904|gb|EET26424.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus ATCC 51756] Length = 772 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 54/292 (18%), Positives = 104/292 (35%), Gaps = 50/292 (17%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------------- 236 QV ++ I +V + + +G Q T +S+G G Sbjct: 479 RPVPQVLIEARIVQVTTNAAQSLGIQWGGTYTSNGGGGVINLSGTGASQYTSSQGGSYPI 538 Query: 237 -----------------------------------KFVSEGGDFSVKGVLDRFSFETVLH 261 F++ L Sbjct: 539 GATSGASGGTSTGSGIGVPAVVNLPAYAPAGSALTGLNPASLGFALGTAAGNRILNLQLQ 598 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL+ + + ++ P + + A G + Y+ +SS GATSV+ + L TP Sbjct: 599 ALQASNQAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATSVSFKKAELSLDVTPH 657 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + G++ L + + ++P ++ T + + +G T+V+ G+ D Sbjct: 658 IAPNGKVTLDVDAKNNQPNYAQTTPSGVPINTQEVKTKLLVNNGQTVVIGGIYTDSKSHY 717 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 G+P+L IP+LG LF++ +N ++E+ + TP +V + DL+ D Sbjct: 718 DTGVPVLKDIPLLGWLFKSKTYNDSQSELLVFLTPKVVGGQSEDDLAGEDSG 769 >gi|88858853|ref|ZP_01133494.1| general (Type II) secretion pathway (GSP) D protein [Pseudoalteromonas tunicata D2] gi|88819079|gb|EAR28893.1| general (Type II) secretion pathway (GSP) D protein [Pseudoalteromonas tunicata D2] Length = 685 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 106/244 (43%), Gaps = 15/244 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++ L+I Q+ L+V IAEV + G + + + G S A Sbjct: 425 PLVKRLDI-LPKQIMLEVIIAEVSLTNEFKQGVEFAFKNGNYGTSTEKAF-------MGD 476 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G + +L + +++ L+ + + L+ P+L G +A+ G ++S Sbjct: 477 GFGGLSYLLQGTQGKLIVNLLQTNSLVNILSRPSLVVRDGVNATINVGTDIPIVGETASD 536 Query: 303 G------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-EPVIGVNAGDMPSYRVRK 355 T + GV L TPTV + G + + I+ ++S + G PS R Sbjct: 537 PINGDRQTTKIEYRKTGVELAVTPTVNAQGIVLMEIKQKISNQVESGSTVSGNPSVFERT 596 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +T V SG TI+L GL+ ++ +P S IPILG LFR + ++TE+ I T Sbjct: 597 INTEVVAESGQTIILGGLISENKSTKASRVPFFSGIPILGNLFRADTESGDKTELVILVT 656 Query: 416 PFLV 419 P ++ Sbjct: 657 PRVI 660 >gi|90413595|ref|ZP_01221585.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK] gi|90325368|gb|EAS41857.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK] Length = 565 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 101/260 (38%), Gaps = 26/260 (10%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKF--- 238 +++ L+I + QV ++ I + + ++G + + + S ++ G Sbjct: 306 IISALDIPVK-QVQIEARIVTINEGDVDELGVRWGVSKHNGNFTLGGSIESNLGSVGLLK 364 Query: 239 -----------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + L AL+ + ++ P L + Sbjct: 365 DDVSVDDFLNVNLAAQKAGASSIAFQIAKVGDILLDLELSALQSESKAEIISSPRLVTTN 424 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 Q+A G + Y SS+GA S+ + L TP + ++ L + EP Sbjct: 425 KQTAYIEQGTEIPYLEA-SSSGAVSIDFKKAVLSLMVTPQITPDNKLVLDLVVTQDEPGK 483 Query: 342 G--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 G+ S ++ T V + +G TIVL G+ + + + +PLL +P LGALFR Sbjct: 484 TVVTGIGEAVSINTQRIGTQVLVENGETIVLGGIYQHQMNKSVSKVPLLGDLPYLGALFR 543 Query: 400 NSRFNREETEIFIAATPFLV 419 +S + E+ I TP +V Sbjct: 544 HSLEEMGKRELLIFITPKIV 563 >gi|254448307|ref|ZP_05061769.1| general secretion pathway protein D [gamma proteobacterium HTCC5015] gi|198262174|gb|EDY86457.1| general secretion pathway protein D [gamma proteobacterium HTCC5015] Length = 694 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 61/300 (20%), Positives = 110/300 (36%), Gaps = 31/300 (10%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 V + ++ T A + + V+ L+I QV ++ I EV Sbjct: 314 TVSSDKEVD-IQADPGTNSLIITAAPDALRNIESVVRQLDIR-RAQVHVEAIIVEVSDTA 371 Query: 210 LKQIGFQHSITGSS---------------------SGPSKSFAADFGGKFVSEGGDFSVK 248 +++GF + + +G + + D G V G Sbjct: 372 ARELGFSYLFANENGFDNETNPVGGALLGGGGDVINGIAAASTGDGSGASVPNGFTVGFG 431 Query: 249 GVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------ 301 + + F +L A+ T L+ P++ + + A G + T S + Sbjct: 432 DRDNSGNVFAGILRAVASDTEANLLSTPSIVTLDNEEAEIVVGQNVPFVTGSYTTASSGA 491 Query: 302 -TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 +V D GV L TP + I L I+ E S V A R+ T+V Sbjct: 492 NNPFQTVERQDVGVTLKITPQINEGDVIRLDIEQEASSVVESSVASGQLITNKREIKTSV 551 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G +VL GL+ D ++ +PLL IP+LG LF+ + ++ + + P +++ Sbjct: 552 MIEDGQMLVLGGLIDDQTRKSLFKVPLLGDIPLLGRLFQYRTNSNDKRNLMVFLHPKILR 611 >gi|162419434|ref|YP_001608044.1| putative outer membrane porin HofQ [Yersinia pestis Angola] gi|165936209|ref|ZP_02224778.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. IP275] gi|166213214|ref|ZP_02239249.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. B42003004] gi|167399124|ref|ZP_02304648.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418934|ref|ZP_02310687.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425621|ref|ZP_02317374.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470614|ref|ZP_02335318.1| protein transporter HofQ [Yersinia pestis FV-1] gi|229836369|ref|ZP_04456536.1| predicted fimbrial transporter [Yersinia pestis Pestoides A] gi|229840006|ref|ZP_04460165.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842087|ref|ZP_04462242.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis str. India 195] gi|229904612|ref|ZP_04519723.1| predicted fimbrial transporter [Yersinia pestis Nepal516] gi|162352249|gb|ABX86197.1| protein transporter HofQ [Yersinia pestis Angola] gi|165915823|gb|EDR34431.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. IP275] gi|166205512|gb|EDR49992.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. B42003004] gi|166962928|gb|EDR58949.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051628|gb|EDR63036.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055311|gb|EDR65105.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678730|gb|EEO74835.1| predicted fimbrial transporter [Yersinia pestis Nepal516] gi|229690397|gb|EEO82451.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis str. India 195] gi|229696372|gb|EEO86419.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706437|gb|EEO92444.1| predicted fimbrial transporter [Yersinia pestis Pestoides A] gi|320013284|gb|ADV96855.1| putative fimbrial transporter [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 500 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85 P E A +++ + +++++ + + + + +V P +A ++ Sbjct: 113 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 168 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 L + G ++ + ++ A +TL A++ + + Sbjct: 169 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 224 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L G + + S A + + T L + A + + L + QV L I + Sbjct: 225 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 280 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262 + L+++G + G G + DF SV + E L A Sbjct: 281 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 339 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE+ + +A P L Q+AS G Y A ++ + + + TP + Sbjct: 340 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 399 Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L G+I L ++ + P I + +M ++ T V + G TIVL G+ + +Q Sbjct: 400 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 459 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 460 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 500 >gi|260773652|ref|ZP_05882568.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP 69.14] gi|260612791|gb|EEX37994.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP 69.14] Length = 536 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 117/311 (37%), Gaps = 34/311 (10%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E ++ G +++ + +A ++ R ++ +++ ++ + QV Sbjct: 208 QLESTIGRLIGSGSGQSVMVTPQASVITVRAYPDEIREV------RQFLDMSHLRIQRQV 261 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251 L+ I EV + Q G S T SS+G VS G L Sbjct: 262 ILEAKILEVTLNDGFQQGINWSKTFSSNGNDYQLGQGVISNPVSSLPGMDAIGTLLGGQT 321 Query: 252 ----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305 SF+ VL + + L+ P +TA + Q A G Y T +S T Sbjct: 322 NLVVKSGSFDAVLSFMSTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTDLTSEVGTGD 381 Query: 306 --------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------M 348 +T G+ L TP + G + L + V E + + Sbjct: 382 NANVAPNIQLTPFFSGISLDVTPQIDDDGYVFLHVHPSVIEVEEQKKSVQFNDRIITLPL 441 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +R++D+ + G +V+ GL+K + +P IP+LG LFR + ++T Sbjct: 442 ARSSIRESDSVIRAQDGDVVVIGGLMKSNTMNQTSKVPFFGDIPLLGHLFRQTSNVTQKT 501 Query: 409 EIFIAATPFLV 419 E+ I P +V Sbjct: 502 ELVILLKPTVV 512 >gi|224826467|ref|ZP_03699569.1| type II and III secretion system protein [Lutiella nitroferrum 2002] gi|224601568|gb|EEG07749.1| type II and III secretion system protein [Lutiella nitroferrum 2002] Length = 659 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 83/444 (18%), Positives = 153/444 (34%), Gaps = 72/444 (16%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV- 80 S P E A + I + I+ +K + + + V + T D + Sbjct: 169 SALSRPITLEFRDAALKAVFEVISRTSGINFVFDKDVRPDLK---ATIFVRNSTIEDAIQ 225 Query: 81 -----------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 V + T+ ++ N + + ++ L + +R Sbjct: 226 LLLVTNQLDRRVLNDNTIMVYPNNPAK-----QKDYQELVIKNFYLANAEAKDTANLIRA 280 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + ++ V+ + VV+ AV+++E ++ + Sbjct: 281 LLKTRDVFVDDKRNLVVMRDTP-------EAVKVAERLIASQDLAEPEA----------- 322 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------SSGPSKSFAADFG 235 L V + EV R L+ +G + P+ Sbjct: 323 -------ILDVEVVEVNRARLQSLGIDWPSQVGYGLLTGGTSTQTGTVTNPTTGAVTPVV 375 Query: 236 GKFVSEGGDFSVKGVLDRF--------SFETVLHALERATAIRTLAEPTLTAISGQSASF 287 V+ V + + + VLH + T LA P + + + A Sbjct: 376 TPGVAATVASGVINLRNNPLGLTTFIANPALVLHLQAQDTDANVLANPRIRVKNHEKAKI 435 Query: 288 TSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV- 343 G + V ++ A SV+ D GV L P++ + + + EVS V V Sbjct: 436 HIGDKVPVFTSTAVVNAGIAQSVSYLDVGVKLEVKPSIGLDDDVTIDVGLEVSSIVKQVD 495 Query: 344 -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 R ADTT+ L G T VLAGL++D+ ++ IP L +PI+G LF ++ Sbjct: 496 FGTSTAYQIGSRAADTTLRLRDGETQVLAGLIQDEDRRSITKIPGLGDLPIVGRLFSSNN 555 Query: 403 FNREETEIFIAATPFLVKPVAMRD 426 +R ++EI + TP +V + + D Sbjct: 556 DSRSKSEIVLLITPHIVHNLDLPD 579 >gi|313669028|ref|YP_004049312.1| pilus secretin [Neisseria lactamica ST-640] gi|313006490|emb|CBN87953.1| pilus secretin [Neisseria lactamica 020-06] Length = 726 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 103/261 (39%), Gaps = 24/261 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------------S 222 K+++ L++ QV ++ I E + +G + TG Sbjct: 459 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEG 517 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G S + S+ + + L A E + +TLA P + + Sbjct: 518 GEGGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNR 577 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + A SG + ++ SSS G++S T + L TP + G+I + ++ PV Sbjct: 578 KEAKIESGTEIPFQDTSSSGGSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPV 637 Query: 341 I-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V + + +T + +GGT+++ G+ +++ IPLL IP++G LF+ Sbjct: 638 DCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKIPLLGDIPVIGNLFK 697 Query: 400 NSRFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 698 TRGKSTNRRELLIFITPRIMD 718 >gi|209756638|gb|ACI76631.1| putative transport protein [Escherichia coli] gi|320645172|gb|EFX14188.1| outer membrane porin HofQ [Escherichia coli O157:H- str. 493-89] gi|320650483|gb|EFX18949.1| outer membrane porin HofQ [Escherichia coli O157:H- str. H 2687] Length = 412 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 83/425 (19%), Positives = 153/425 (36%), Gaps = 29/425 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ L P V P + + + + +K+++ + P Sbjct: 1 MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53 Query: 65 DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V + VV S L + G + + D + ++ Sbjct: 54 VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + NI ++ + + + T N+ A S Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ + +++ QV L I + L+++G + ++ + G Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224 Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V G ++ L ALE+ + +A P L A Q AS G + Y+ Sbjct: 225 VATATTHVGFNIGRINGRLLALELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354 S +GATSV + + + TPTVL GRI L+ I V V+ G++ + + Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404 Query: 415 TPFLV 419 TP LV Sbjct: 405 TPRLV 409 >gi|300696689|ref|YP_003747350.1| secretion type II protein related to gspD (secretin) protein [Ralstonia solanacearum CFBP2957] gi|299073413|emb|CBJ52927.1| secretion type II protein related to gspD (secretin) protein [Ralstonia solanacearum CFBP2957] Length = 754 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 81/427 (18%), Positives = 155/427 (36%), Gaps = 55/427 (12%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 + + + P E + A + + + ++ +K ++ V V + + T A Sbjct: 176 ALSAAFRKPISLEFHDAQMRQVFEVLSRASGLNFVFDKD--VRTDQKV-TVFLRNSTVAS 232 Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 VV V + ++ + + +L D + T Sbjct: 233 VVNTVLLTNQLEQRVLDGNAILIYPNTPAK-----QRDYQPLTVRTFVLSNSDAKDVANT 287 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L+ + +I V+ + +V+ I+ +++ V + E Sbjct: 288 LKTILKTRDIVVDEKRNMIVMRDTPDAIEAAEKLVAVHEM-------------------- 327 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 E +V L+V I EV+R L+ +G Q S + + S + Sbjct: 328 -----PEPEVMLEVEILEVKRSRLQDLGIQLPSQLSLTPLASSSGGTLTLDDLRHLNPTR 382 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303 + + + ++A LA P + + + A G + T +S+ Sbjct: 383 IGATVSPLNIN--VNAAVTD--TNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGFV 438 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360 A +V D G+ L PTV + +RI EVS+ V + R A T + Sbjct: 439 AENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSIAYEIGTRNATTLL 498 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G +LAGL++D+ + +P L IP LG LF N+ ++EI ++ TP +++ Sbjct: 499 RLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRVIR 558 Query: 421 PVAMRDL 427 P +L Sbjct: 559 PAQRPNL 565 >gi|257485358|ref|ZP_05639399.1| general secretion pathway protein GspD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 341 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G +++ S R + + + L+ QV ++ I EV Sbjct: 24 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 82 Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G Q S T + + G + + + + L Sbjct: 83 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 142 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314 ALE + L+ P+L ++ Q A G S +T ++ V GV Sbjct: 143 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 202 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 +L P + G + + IQ +VS +A P R T V SG T++L Sbjct: 203 ILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSGQTVLLG 262 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ + + Sbjct: 263 GLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQVT 320 Query: 432 DHYSV 436 D Y Sbjct: 321 DDYRQ 325 >gi|85712729|ref|ZP_01043774.1| Type II secretory pathway, component PulD [Idiomarina baltica OS145] gi|85693461|gb|EAQ31414.1| Type II secretory pathway, component PulD [Idiomarina baltica OS145] Length = 695 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 70/445 (15%), Positives = 141/445 (31%), Gaps = 84/445 (18%) Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG-------KNVGQANVILI-----GH 104 ++Q+ V D ++ S R + G +++ Sbjct: 182 SRLVQIIERVDKAGDQDVDIVELQYASARELVGIAQNLFEKANADGTPALLIPKIVADER 241 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADS---------------------NIRVEMVSD 143 +++ + + L L + + N+ + ++ Sbjct: 242 SNSVIVSGEPRARSRVVKLIKQLDQDLKTEGNTRVYYLKYARAEEMVEVLQNVSQSIKAE 301 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKV 200 G + ++ +S + + + + V+ L+I QV ++ Sbjct: 302 EAKQTGQNSVRNRADNSISISAHESTNTVVITAEPDMLAALENVIRDLDIR-RAQVQVEA 360 Query: 201 TIAEVRRDILKQIGFQHSITGSS-------------------------SGPSKSFAADFG 235 I EV G Q G S + D G Sbjct: 361 IIVEVLEGDNVDFGIQWISENGGLVQYNTGNQVPIGSLAAAAYQARPREGTSVTTVNDNG 420 Query: 236 GKFVSE---------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + G + + + V+ A+ + T LA P++ + Sbjct: 421 QTVTTTNPEERGNLELLANLLGNVNGMMFGTIQNDWAAVVQAVSQDTNSNILATPSIVTV 480 Query: 281 SGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + ASF G + T + + +V + G+ L TP + + + I+ E Sbjct: 481 DNEEASFLVGQEVPTITGSTLGNDNQSPFQTVDRQEIGIKLKVTPQINEGNAVQMVIEQE 540 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 VS + + R+ TTV G TIVL GL+ +D+Q+ IPLL IP +G Sbjct: 541 VSSLSGATSVDVI--VNKRELKTTVMAEDGETIVLGGLIDEDVQESVSKIPLLGDIPFIG 598 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 LF ++ + ++ + + P +V+ Sbjct: 599 RLFSSTSTSTQKRNLMVFIRPTIVR 623 >gi|91791628|ref|YP_561279.1| type II and III secretion system protein [Shewanella denitrificans OS217] gi|91713630|gb|ABE53556.1| type II and III secretion system protein [Shewanella denitrificans OS217] Length = 683 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 26/283 (9%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ + + + + L+ + QV ++ + V+ D+ + +G + I Sbjct: 398 SVAVDQRTNTLLVKDTADIIDNIHRLIEVLDIPIKQVLIESRMVTVKDDVSEDLGIRWGI 457 Query: 220 TGSSSGPSKSFAADFGGKFVSE---------------------GGDFSVKGVLDRFSFET 258 T S + + F V + D + Sbjct: 458 TDQQGTKGTSGSLTGSQNIANGVVPSIDDRLNVNLPAAASNHTSIAFHVAKLADGTILDL 517 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 L ALE+ +A P +T S Q A++ G + S+S+GATSVT + L Sbjct: 518 ELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGATSVTFKKAVLSLRV 576 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKD 376 TP + R+ L ++ V+ P+ ++ T V + +G TIVL G+ + Sbjct: 577 TPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLVDNGETIVLGGIYQQ 636 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++ +P+L IP +G LFRN+ E E+ I TP +V Sbjct: 637 NLISRVSKVPILGDIPYVGFLFRNTTDKNERQELLIFVTPKIV 679 >gi|292489895|ref|YP_003532785.1| protein transport protein hofQ [Erwinia amylovora CFBP1430] gi|291555332|emb|CBA23681.1| Protein transport protein hofQ precursor [Erwinia amylovora CFBP1430] gi|312174079|emb|CBX82332.1| Protein transport protein hofQ precursor [Erwinia amylovora ATCC BAA-2158] Length = 414 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 75/428 (17%), Positives = 160/428 (37%), Gaps = 31/428 (7%) Query: 8 FFTMMSIFLFSSNP-SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 ++ +++ +P + A+ P + A + + +++++ + + + + + Sbjct: 1 MLRILCLWMALISPLAAAQPPLTLAFDNAPVAQVLQALADYQQLNLVVAPGVEGHLSLRL 60 Query: 67 QDV--LVSDPTKADVVVHS----PRTMYLFGK---NVGQANVILIGHDGKQMLNLDILIE 117 +DV + S + +F Q + + ++ML L I Sbjct: 61 KDVPWRQALQLVIKTGKLSMEQQGNVLMVFPASWQQEEQRKAAVQREEQEKMLPLFDRIL 120 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 + ++ + R+ ++ L ++ L++T Sbjct: 121 TLVHADAASVNTSLQSERARLMSARGSITLDSRTNSLLLRDTEKALAQT----------- 169 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--- 234 + + L++ +Q+ L I + + L+++G ++G + + Sbjct: 170 ----EHWVRQLDVPL-EQIELAAQIVTMSEESLRELGVTWGMSGEAQVADALRTSQLRVD 224 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G LD E L ALE +A P L Q+AS G + Sbjct: 225 LASGRPAGVAGLTLAKLDGRLLELELSALESEHQADIIASPRLFTSHQQTASIKQGTEIP 284 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYR 352 Y+ + ++G+T++ + + + TP V S GRI L I V + ++ + Sbjct: 285 YEVSTGNSGSTTMEFKEAMLAMEVTPLVQSNGRILLKLHISQNVPGRNMRSGENEVLTID 344 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 ++ DT V L G T+ L G+ + +P L IP+LG+LFR+ ++ E+ I Sbjct: 345 KQEIDTQVMLKDGQTLALGGIFQQQSATGSTRVPWLGDIPLLGSLFRHDVRQQKRRELVI 404 Query: 413 AATPFLVK 420 TP LV+ Sbjct: 405 FITPRLVR 412 >gi|208779792|ref|ZP_03247136.1| type IV pilus secretin PilQ family protein, putative [Francisella novicida FTG] gi|208744247|gb|EDZ90547.1| type IV pilus secretin PilQ family protein, putative [Francisella novicida FTG] Length = 596 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 72/422 (17%), Positives = 154/422 (36%), Gaps = 40/422 (9%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84 P A + + + +++ ++ + + +D+++V P ++V+ S Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 L K + + + L++ +R + + + FI + + Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292 Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + +G + + + S A + T + K+V+N ++I DQV ++ Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------EG 242 I EV R ++GF + + S + + Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPGPTPTPTPVDTFVGT 409 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + V + + ALE + +A P L + Q A F G+ + ++++ Sbjct: 410 TAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATAS 468 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKAD 357 GA +V + + L TP + G I + I + P + R+ Sbjct: 469 GAAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREIT 528 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP Sbjct: 529 TKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPK 588 Query: 418 LV 419 ++ Sbjct: 589 II 590 >gi|319424897|gb|ADV52971.1| MSHA system outer membrane secretin, MshL [Shewanella putrefaciens 200] Length = 559 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 61/297 (20%), Positives = 112/297 (37%), Gaps = 22/297 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 240 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEV 299 Query: 206 RRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 Q G Q ++ + A G V+ + F T+++ Sbjct: 300 TLSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINL 359 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHDY 312 L+ + L+ P +TA + Q A G + T S +T +T Sbjct: 360 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 419 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELP 363 G+ L TP + G + L + V + + + +R++DT + Sbjct: 420 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAA 479 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 SG +V+ GL+K + ++ +PLL IP+LG LF+N +++TE+ I P +V Sbjct: 480 SGDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVVD 536 >gi|332678440|gb|AEE87569.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida Fx1] Length = 596 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 72/422 (17%), Positives = 154/422 (36%), Gaps = 40/422 (9%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84 P A + + + +++ ++ + + +D+++V P ++V+ S Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 L K + + + L++ +R + + + FI + + Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292 Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + +G + + + S A + T + K+V+N ++I DQV ++ Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------EG 242 I EV R ++GF + + S + + Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPTPTPTPTPTPTPVDTFVGT 409 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + V + + ALE + +A P L + Q A F G+ + ++++ Sbjct: 410 TAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATAS 468 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKAD 357 GA +V + + L TP + G I + I + P + R+ Sbjct: 469 GAAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREIT 528 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP Sbjct: 529 TKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPK 588 Query: 418 LV 419 ++ Sbjct: 589 II 590 >gi|119776501|ref|YP_929241.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B] gi|119769001|gb|ABM01572.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B] Length = 685 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 60/318 (18%), Positives = 118/318 (37%), Gaps = 39/318 (12%) Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + + +V + T+ A L ++ Sbjct: 381 ATDIAELLKSEGSSLLSDRGSVAVDERTNTLLVKDTAETLVNV---------------QR 425 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------------- 229 ++ +L+I QV ++ + V+ ++ + +G + +T S Sbjct: 426 MIEVLDIPIR-QVLIESRMVTVKDNVAEDLGIRWGVTDQQGTKGTSGSLEGAESIAGGVI 484 Query: 230 ------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + + F V + D + L ALE+ +A P +T S Q Sbjct: 485 PAISDRLNVNLPAPTNAASIAFHVAKLADGTVLDMELSALEQENKGEIIASPRITT-SNQ 543 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 A++ G + +SS+G+T+V + L TP + R+ L ++ V Sbjct: 544 KAAYIEQGVEIPYVSASSSGSTTVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRGETV 603 Query: 344 NAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + ++ T V + +G TIVL G+ + ++ +P+L IP++G LFRN+ Sbjct: 604 DTATGRAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNT 663 Query: 402 RFNREETEIFIAATPFLV 419 E E+ I TP +V Sbjct: 664 SDKNERQELLIFVTPKIV 681 >gi|260774710|ref|ZP_05883614.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC BAA-450] gi|260609366|gb|EEX35517.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC BAA-450] Length = 454 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 75/416 (18%), Positives = 152/416 (36%), Gaps = 33/416 (7%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 + +I ++ ++ + + + V++ V P D+++ L Sbjct: 46 FQDIPVRQVLQQIADYNDFNLVVSDAVSGNLTLRVKE--VPWPQLLDIILRMKG---LEK 100 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + G ++ + Q + E+ A L+ IA + ++ + Sbjct: 101 RMDGSVLLVATAAEIAQFRQQKLEQEKVTAELQPLESEIIAMRFAKAADIAALLSDSAAT 160 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 R + + + T + K ++ L++ + QV ++ I + L+ Sbjct: 161 RMLSERGAISIDTRTNSLLIRDVAINIQAMKAIITALDVPVK-QVQIEARIVSLNEGDLQ 219 Query: 212 QIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEGGDFSV 247 ++G + + ++ S + + F V Sbjct: 220 ELGVRWGFSSTNGSHSVGGSIENNLANLNLYGDSDSSLDDFLNVNLAATSVNASTIAFQV 279 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + + L AL+R + ++ P L + Q A G + Y +SS GATSV Sbjct: 280 AKLGSDTLLDLELSALQRESRAEVISSPRLITTNKQPAYIEQGTEIPYLEAASS-GATSV 338 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSG 365 + L TP + S R+ L + P V+ G+ + ++ T V + +G Sbjct: 339 NFKKAVLSLKVTPQITSDNRLILDLNVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNG 398 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 TIVL G+ + + + +PLL IP+LG LFR + ++E+ I TP +V P Sbjct: 399 ETIVLGGIYQHSVSDTVDQVPLLGDIPLLGGLFRRTYQQMGKSELLIFVTPTVVAP 454 >gi|269959332|ref|ZP_06173715.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835769|gb|EEZ89845.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 715 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 13/242 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++ L++ QV L++TIAEV + G + + + + S A G Sbjct: 460 PLIAQLDV-MPKQVILEMTIAEVTMTDEFKFGVEWAFSNGNFSASTKDAFGL----DKVG 514 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G F D F L A E + +++P+L G A+ G +++ Sbjct: 515 GGFIKWMSGDDF---INLQAFESNNNVNIMSKPSLLVRDGVEANINVGTDIPVVGQTTTD 571 Query: 303 GAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-EPVIGVNAGDMPSYRVRKAD 357 SV GV + TPT+ + G + + I E S + G + PS R Sbjct: 572 SNNGVTRSVEYRKTGVKVAVTPTINAQGIVSMVISQENSNQVDGGTSVEGNPSIFDRSIT 631 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V SG T++L GL+ +++ +P L +P++G LF N+ +TE+ I TP Sbjct: 632 TEVVAESGQTVILGGLISENVTNNGSAVPFLGSLPVVGGLFGTKTDNKTKTELVIMVTPR 691 Query: 418 LV 419 +V Sbjct: 692 IV 693 >gi|160873627|ref|YP_001552943.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS195] gi|160859149|gb|ABX47683.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS195] gi|315265856|gb|ADT92709.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS678] Length = 559 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEV 298 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261 Q G Q G + G +S+ ++ GV F T+++ Sbjct: 299 TLSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMIN 358 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311 L+ + L+ P +TA + Q A G + T S +T +T Sbjct: 359 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFF 418 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVEL 362 G+ L TP + S G + L + V + + + ++P + +R++DT + Sbjct: 419 SGIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRA 478 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +++ GL+K + ++ +PLL IP LG LF+N +++TE+ I P +V Sbjct: 479 ASGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535 >gi|262273168|ref|ZP_06050984.1| type II secretory pathway component EpsD [Grimontia hollisae CIP 101886] gi|262222746|gb|EEY74055.1| type II secretory pathway component EpsD [Grimontia hollisae CIP 101886] Length = 671 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 105/291 (36%), Gaps = 44/291 (15%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + + V+ L+I QV ++ I E+ +G Q + Sbjct: 323 TAPPDILRALEGVIAQLDIR-RAQVLIEAMIVEMSESDGANLGIQWGSLDGGGIQFGNTG 381 Query: 232 ADFGGKFVSE-------------------------------------GGDFSVKGVLDRF 254 ++ GG + + Sbjct: 382 VPITNYLAAQEKAKDKTTTETRFDRDNIPVEVPITESGDPTAIAEVLGGVSGLAAGVVLG 441 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTT 309 + ++ A+ + L+ P+L + + ASF G + T S++ +V Sbjct: 442 DWTALVTAVSSNSDSNILSSPSLMVLDNEEASFIVGEEVPVVTGSTTGSNNDNPFQTVER 501 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L TP + + L I+ E+S + A D+ + R+ T+V IV Sbjct: 502 KDVGVKLKITPQINEGDSVQLNIEQEISNVLGASGAVDI-RFGKRQLTTSVLAADQQMIV 560 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L+GL+ + + ++ +PLL IP+LG LF+++ + + + + P +++ Sbjct: 561 LSGLIDEQTNESEQKVPLLGDIPLLGHLFKSTSSGKTKRNLMLFIKPTIIR 611 >gi|30250239|ref|NP_842309.1| pilQ; fimbrial type-4 assembly signal peptide protein [Nitrosomonas europaea ATCC 19718] gi|30181034|emb|CAD86224.1| probable pilQ; fimbrial type-4 assembly signal peptide protein [Nitrosomonas europaea ATCC 19718] Length = 718 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 104/264 (39%), Gaps = 39/264 (14%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKF 238 QV ++ I E + +G + + ++ + ++ G Sbjct: 446 TQVRQVMIETRIVEATDTFSRNLGARFGVQNATRIGSETNGRRLGISGNLGNSSGLAGGT 505 Query: 239 VSEGGD-----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEP 275 VS G S+ + + L ALE + R +A P Sbjct: 506 VSPSGGDNLNVNLPAAALAGVAGGPAALGLSLIKINNGTLINLELSALESDSKGRVIASP 565 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L + AS G + ++T+S + + + L TP + I +++ + Sbjct: 566 RLVTANRVEASIEQGTEIPFQTISVT--RPQIQFKKAVLGLKVTPQITPDDNIIMKL--Q 621 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V++ G N P+ ++ T V + +GGT+V+ G+ + +Q + +PLL IP+LG Sbjct: 622 VNQDTRGENTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEKQDRNQVPLLGDIPVLG 681 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF+N+ ++ E+ I TP ++ Sbjct: 682 NLFKNTAKRDDKRELLIFVTPRIL 705 >gi|254490277|ref|ZP_05103466.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga thiooxidans DMS010] gi|224464410|gb|EEF80670.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga thiooxydans DMS010] Length = 672 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 56/316 (17%), Positives = 117/316 (37%), Gaps = 55/316 (17%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 +I ++ ++++++ + D ++ ++ + + Sbjct: 380 PRGSITIDDRTNSLLIRDTADNLVDIRQVIDELDKPV----------------------- 416 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--------------- 236 QV ++ I D K++G + + S+ + G Sbjct: 417 --RQVLIESRIVIANNDFNKELGVRFGTSAQSNTLGAGSSGSLTGLSTNPNNDDQIRANS 474 Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 S ++ + E L A++ ++ P + + Q Sbjct: 475 VVGNDLNVNLPVSNPSGSIGLALAKLPLGMILELELSAMQAEGKGEVISSPRVITSNQQQ 534 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A+ G + Y+ +SS GAT+V+ + + L TP + RI + + EVS+ +G Sbjct: 535 ATIEQGTEIPYQEATSS-GATNVSFKEAVLKLDVTPQITPDDRIVMDL--EVSKDEVGEV 591 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +PS R T V + +G T+VL G+ + E +P +P +G LF+N+ Sbjct: 592 FLGVPSIDTRSVKTQVLVDNGETVVLGGIYEQSTNDNVERVPFFGDLPYVGFLFKNTFKE 651 Query: 405 REETEIFIAATPFLVK 420 + E+ + TP +VK Sbjct: 652 DRKRELLVFVTPKIVK 667 >gi|329894543|ref|ZP_08270351.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC3088] gi|328922981|gb|EGG30307.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC3088] Length = 691 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 34/269 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 +++L++I QV ++ I + ++ ++G +++ + + G Sbjct: 419 NLIDLVDIPIR-QVMIEARIVIAQSNLDDELGISWGGGHTNNNFFGNALSISGDVENVTN 477 Query: 236 ----------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G F+V L ALE ++ Sbjct: 478 LNQSIIDGLPGSVSLPGSLLVDLGVAEPAGSFAVGFTSKDVFLTAELSALEAVGKGEVVS 537 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 +P + Q AS SG + Y+ S+ GAT+ + + L TP + RI L + Sbjct: 538 QPKVITGDKQKASIKSGTEVPYQES-SAGGATATQFKEAVLQLDVTPNITPDDRILLDLV 596 Query: 334 TE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + + V N G +P+ + T V + +G TIVL G+ + + + +P+L Sbjct: 597 INQDSIGDLVPSGNGGSIPTIDTTELTTQVLVGNGETIVLGGVFRTEDLEKVSKVPVLGD 656 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IPI+G F++S +R +TE I TP ++ Sbjct: 657 IPIMGQFFKSSSTSRTKTETLIFITPRIL 685 >gi|239996578|ref|ZP_04717102.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonas macleodii ATCC 27126] Length = 590 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 24/269 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--- 229 + ++K +N L+I + QV ++ + V D+ +Q+G + + S Sbjct: 320 DTLASIDEARKTINALDIPVK-QVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGVSGSL 378 Query: 230 -----------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 + + F + ++D + L ALE + Sbjct: 379 EGADTIAGGIVPSIDNRLNVNLPVTSAAGSIGFQIASLVDGTILDLELSALESENKGEII 438 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR- 331 A P +T + A G + Y +SS GATSV + L TP + RI L Sbjct: 439 ASPRITVANQHEAYIEQGTEIPYVQATSS-GATSVEFKKAVLSLKVTPHITPDNRIILDL 497 Query: 332 -IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + + + + G+ + ++ T V + +G TIVL G+ + +PL Sbjct: 498 VVTQDTRGETVSTSTGEAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGD 557 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 +P++GALFRNS +++ E+ I TP +V Sbjct: 558 LPVVGALFRNSSQLQQKRELLIFVTPKIV 586 >gi|56708227|ref|YP_170123.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670698|ref|YP_667255.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis FSC198] gi|224457344|ref|ZP_03665817.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370714|ref|ZP_04986719.1| type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis FSC033] gi|254875049|ref|ZP_05247759.1| type IV pilus multimeric outer membrane protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604719|emb|CAG45789.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321031|emb|CAL09172.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis FSC198] gi|151568957|gb|EDN34611.1| type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis FSC033] gi|254841048|gb|EET19484.1| type IV pilus multimeric outer membrane protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159452|gb|ADA78843.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis NE061598] Length = 594 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 72/420 (17%), Positives = 153/420 (36%), Gaps = 38/420 (9%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84 P A + + + +++ ++ + + +D+++V P ++V+ S Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVHGNISIDLKNV----PWNEVMNIVLVSK 235 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 L K + + + L++ +R + + + FI + + Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292 Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + +G + + + S A + T + K+V+N ++I DQV ++ Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------------EGGD 244 I EV R ++GF + + S + + Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPGPTPTPVDTFVGTTA 409 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + E + ALE + +A P L + Q A F G+ + ++++GA Sbjct: 410 KLAYTIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGA 468 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTT 359 +V + + L TP + G I + I + P + R+ T Sbjct: 469 AAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTK 528 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V G T+V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP ++ Sbjct: 529 VMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 588 >gi|54307500|ref|YP_128520.1| putative fimbrial assembly protein [Photobacterium profundum SS9] gi|46911920|emb|CAG18718.1| putative fimbrial assembly protein [Photobacterium profundum SS9] Length = 567 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 26/260 (10%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKF--- 238 +++ L+I + QV ++ I + + ++G + + + S ++ G Sbjct: 308 IISALDIPVK-QVQIEARIVTINEGDVDELGVRWGVSKHNGNFTLGGSIESNLGAVGLLK 366 Query: 239 -----------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + L AL+ + ++ P L + Sbjct: 367 DDVSVDDFLNVNLAAQKAGASSIAFQVAKIGDILLDLELSALQSESKAEIISSPRLVTTN 426 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 Q+A G + Y SS+GA SV + L TP + ++ L + EP Sbjct: 427 KQTAYIEQGTEIPYLEA-SSSGAVSVAFKKAVLSLMVTPQITPDNKLVLDLVVTQDEPGK 485 Query: 342 G--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 G+ S ++ T V + +G TIVL G+ + + + +PLL +P LGALFR Sbjct: 486 TVVTGIGEAVSINTQRIGTQVLVENGETIVLGGIYQHQVNKSVTKVPLLGDLPYLGALFR 545 Query: 400 NSRFNREETEIFIAATPFLV 419 +S + E+ I TP +V Sbjct: 546 HSLEEMGKRELLIFITPKIV 565 >gi|152999034|ref|YP_001364715.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS185] gi|151363652|gb|ABS06652.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS185] Length = 559 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEV 298 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261 Q G Q G + G +S+ ++ GV F T+++ Sbjct: 299 TLSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMIN 358 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311 L+ + L+ P +TA + Q A G + T S +T +T Sbjct: 359 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFF 418 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVEL 362 G+ L TP + S G + L + V + + + ++P + +R++DT + Sbjct: 419 SGIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRA 478 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +++ GL+K + ++ +PLL IP LG LF+N +++TE+ I P +V Sbjct: 479 ASGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535 >gi|261250571|ref|ZP_05943146.1| type II secretory pathway component EpsD [Vibrio orientalis CIP 102891] gi|260939140|gb|EEX95127.1| type II secretory pathway component EpsD [Vibrio orientalis CIP 102891] Length = 654 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 107/293 (36%), Gaps = 46/293 (15%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSS 224 ++ + V+ L+I QV ++ I E+ +G Q I S++ Sbjct: 302 TAPPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAMIQYSNT 360 Query: 225 GPSKSFA--------------------------------ADFGGKFVSEGGDFSVKGVLD 252 G S D+ + G + Sbjct: 361 GASVGQVMVGLEEAKDTTTTTAVYDSDGKFLRNETTTEEGDYSTLASALGSVNGAALSIA 420 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSV 307 + ++ A+ + L+ P++T + ASF G + ++ +V Sbjct: 421 MGDWTALISAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTSGSNNENPFQTV 480 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + G+ L P + + L I+ EVS + A D+ + R+ +T+V + G Sbjct: 481 DRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVEDGQM 539 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IVL GL+ + + + +P+L IP LG LF+++ E+ + + P +++ Sbjct: 540 IVLGGLIDERALESESKVPILGDIPYLGHLFKSTSTQVEKKNLMVFIKPTIIR 592 >gi|302342781|ref|YP_003807310.1| general secretion pathway protein D [Desulfarculus baarsii DSM 2075] gi|301639394|gb|ADK84716.1| general secretion pathway protein D [Desulfarculus baarsii DSM 2075] Length = 746 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 14/245 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++V IAEV D ++G + + + G + Sbjct: 472 PKQVLIEVVIAEVTLDDQLKLGVEWRYLTENGATFSDINLKPDADLLPTSGLVYTIAKTN 531 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------ 306 F L AL + ++ ++ P L A QSA G + T +++ S Sbjct: 532 ELLFT--LKALAQKDKLQVISSPLLLAAENQSARILVGREIPIITDLTTSEDISTSTGNK 589 Query: 307 -----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTV 360 + D G++L TP + G + L I+ EVS+ P++ R A T V Sbjct: 590 VVDRSIEYRDVGIILTVTPRINDSGVVRLNIRQEVSDVLTDSFGDTGSPAFSQRTATTNV 649 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G +IVLAGL+++ ++ G+P LS +PILG LF+ + TE+ + TP ++ Sbjct: 650 VTTDGQSIVLAGLIQETKHKIDSGVPFLSDVPILGYLFKTEKDVDSRTELILTITPHVIH 709 Query: 421 PVAMR 425 + Sbjct: 710 DMNDA 714 >gi|304411539|ref|ZP_07393152.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS183] gi|307306685|ref|ZP_07586427.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica BA175] gi|304350066|gb|EFM14471.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS183] gi|306910653|gb|EFN41082.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica BA175] Length = 559 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEV 298 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261 Q G Q G + G +S+ ++ GV F T+++ Sbjct: 299 TLSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMIN 358 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311 L+ + L+ P +TA + Q A G + T S +T +T Sbjct: 359 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFF 418 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVEL 362 G+ L TP + S G + L + V + + + ++P + +R++DT + Sbjct: 419 SGIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRA 478 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +++ GL+K + ++ +PLL IP LG LF+N +++TE+ I P +V Sbjct: 479 ASGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535 >gi|15597065|ref|NP_250559.1| secretion protein XqhA [Pseudomonas aeruginosa PAO1] gi|218892174|ref|YP_002441041.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58] gi|9947858|gb|AAG05257.1|AE004613_2 secretion protein XqhA [Pseudomonas aeruginosa PAO1] gi|218772400|emb|CAW28182.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58] Length = 776 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 96/508 (18%), Positives = 170/508 (33%), Gaps = 60/508 (11%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 Q+T + + P+ L + ANA +++ I + + I L++ + Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRSNIERIEAIVRSLDRAGEHDYSI 206 Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D++ V+ A+V+ S GK+ V+ + +L + L Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262 Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166 +L A+S + D L G + + ++ Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLHGERGQDGRGSGKRGLLVRADE 322 Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 L+ + ++ L++ Q+ ++ I E+ +I +G Q ++ Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381 Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 FA G L F ++ AL R + L+ Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441 Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327 P+L + Q A G ++T S SS T+V D GV L TP + Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501 Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ E+S R +TV G IVL GL++DD+Q+ Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSR 561 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP +G LFR+SR R + + + P +V+ A + Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472 R I + A+ + G I Sbjct: 607 HGRYRSIQLLRGAAGEPARPLFEDAGAI 634 >gi|126176391|ref|YP_001052540.1| general secretion pathway protein D [Shewanella baltica OS155] gi|125999596|gb|ABN63671.1| general secretion pathway protein D [Shewanella baltica OS155] Length = 705 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 62/304 (20%), Positives = 108/304 (35%), Gaps = 46/304 (15%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + +ET + + V+N L+I QV ++ I EV G Q + Sbjct: 315 IMAHAETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAS 373 Query: 220 TGSSSGPSKSFAADFGGKFV--------------------------------------SE 241 + G + Sbjct: 374 KAGGGTQFNNLGPTIGEVGAGVWAAQTEKASQTCTGSGDNKTCTDNPDKRGDVTLLAQAL 433 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YK 296 G + + F ++ A+ T LA P++T + Q ASF G + Sbjct: 434 GKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTA 493 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 + S+S +V + GV L P + + L I+ EVS S+ R+ Sbjct: 494 SSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRRL 551 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 TTV SG +VL GL+ +++Q+ + +P L IPI+G LF++S + + + I P Sbjct: 552 TTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKP 611 Query: 417 FLVK 420 +++ Sbjct: 612 TIIR 615 >gi|330882201|gb|EGH16350.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 216 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 119/235 (50%), Gaps = 24/235 (10%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 S + + +L AL+ + LAEP +TA++GQ+ASF +GG+ + V + Sbjct: 1 NGISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMTGQTASFLAGGE-VAVPVPVNR 59 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADT 358 + YGV L F+PT+L GRI L+++ EVS + N +PS+RVR+ADT Sbjct: 60 EVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGYQVPSFRVRRADT 119 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ SG T +AGL + + Q + +P+L +PILG LFR+ RF R ETE+ I TP+L Sbjct: 120 RVEVGSGQTFAIAGLFQHESSQDMDKVPMLGDMPILGNLFRSKRFQRNETELVILITPYL 179 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 V+PV R ++ P D + G GA GF Sbjct: 180 VEPVKDRVVATPLDKQRAAS-------------------TASAGPRSGGAFGFYM 215 >gi|262401919|ref|ZP_06078484.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586] gi|262351891|gb|EEZ01022.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586] Length = 567 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 69/419 (16%), Positives = 138/419 (32%), Gaps = 43/419 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86 + I ++ ++ ++ + V Q VL V R Sbjct: 159 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 214 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 + G + +I + + R L I + + ++ + Sbjct: 215 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 268 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + T + ++++ L+I + QV ++ I V+ Sbjct: 269 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 327 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242 L ++G + + ++ S + Sbjct: 328 EGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVNLAAASTNASS 387 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F V + + L AL+ + ++ P L + Q A G + Y SSS Sbjct: 388 IAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSG 447 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360 +T + + L TP + R+ L + + G+ S ++ T V Sbjct: 448 ASTV-SFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 506 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 507 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 565 >gi|113869481|ref|YP_727970.1| general secretion pathway protein D [Ralstonia eutropha H16] gi|113528257|emb|CAJ94602.1| general secretion pathway protein D [Ralstonia eutropha H16] Length = 812 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 64/313 (20%), Positives = 105/313 (33%), Gaps = 39/313 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------- 242 A QV ++ I EV ++G Q SS G + + A + Sbjct: 434 ARRAQVYIESMIVEVTSTQASELGIQWQGLISSPGGNNNVFAGTNFGTGGQNILNLTLAG 493 Query: 243 ---------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G ++ V +L AL ++ L+ P L + Sbjct: 494 ALADSNRTAGIAAAQGLVQDIGGLNLGIVNKAMGLGALLRALGSNGSVNLLSTPNLITLE 553 Query: 282 GQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + A G T S + T + D G+ L P + G + ++I Sbjct: 554 NEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIF 613 Query: 334 TEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 E S V N P+ VR +T V + G IVL GL++D + +PLL IP Sbjct: 614 QESSNVVQATANLIQGPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDGVQKVPLLGDIP 673 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD-HYSVEDDAKAFFFNRVNKI 451 +G LFR NR +T + + P++++ D D Y N + + Sbjct: 674 WIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAADRLTQDRYDYMRAQQQGFVSPNIMVRD 733 Query: 452 YGPKEASEVEGQN 464 + + Sbjct: 734 TNTPLLPPADAPS 746 >gi|254240262|ref|ZP_04933584.1| secretion protein XqhA [Pseudomonas aeruginosa 2192] gi|126193640|gb|EAZ57703.1| secretion protein XqhA [Pseudomonas aeruginosa 2192] Length = 776 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 96/508 (18%), Positives = 170/508 (33%), Gaps = 60/508 (11%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 Q+T + + P+ L + ANA +++ I + + I L++ + Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRSNIERIEAIVRSLDRAGEHDYSI 206 Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D++ V+ A+V+ S GK+ V+ + +L + L Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262 Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166 +L A+S + D L G + + ++ Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLHGERGQDGRGSGKRGLLVRADE 322 Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 L+ + ++ L++ Q+ ++ I E+ +I +G Q ++ Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381 Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 FA G L F ++ AL R + L+ Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441 Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327 P+L + Q A G ++T S SS T+V D GV L TP + Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501 Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ E+S R +TV G IVL GL++DD+Q+ Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSR 561 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP +G LFR+SR R + + + P +V+ A + Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472 R I + A+ + G I Sbjct: 607 HGRYRSIQLLRGAAGEPARPLFEDAGAI 634 >gi|261211199|ref|ZP_05925488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341] gi|260839700|gb|EEX66311.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341] Length = 571 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 71/419 (16%), Positives = 143/419 (34%), Gaps = 43/419 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86 + I ++ ++ ++ + V Q VL V R Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 + G + +I + + R L I + + ++ + Sbjct: 219 --VDGNVI----LIAPKDELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + T + ++++ L+I + QV ++ I V+ Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 331 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242 L ++G + + ++ S + + Sbjct: 332 EGNLDELGVRWGVMSTNGSHSVGGSIESNLWQQGLLADDKFPVDQFLNVNLASTSANASS 391 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F V + + L AL+ + ++ P L + Q A G + Y SSS+ Sbjct: 392 IAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPY-LESSSS 450 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360 GA++V+ + L TP + R+ L + + G+ S ++ T V Sbjct: 451 GASTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569 >gi|257095715|ref|YP_003169356.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048239|gb|ACV37427.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 703 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 103/272 (37%), Gaps = 38/272 (13%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--HSITGSSSGPSKSFAADFGGKFVSE 241 ++ +++A QV ++ I E K +G + + + + + Sbjct: 427 IITKVDVAAR-QVMIEARIVEAGDSFAKNLGVRLGWNQRQGYQFGGQGASGTAMAGARAN 485 Query: 242 GGDFSVKGVLDRFSFET----------------------------------VLHALERAT 267 F V D +F T + ALE Sbjct: 486 TPGFYTTQVRDIPNFNTDAFNVNLPATPRTGNAGLFSLVLYNSALTQFLNTEISALEADG 545 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + ++ P + + A G + Y+ +SS GATSV+ + L TP + G Sbjct: 546 RGKVISSPRVMTANNIEALIEQGVEIPYQQATSS-GATSVSFKKAVLSLKVTPQITPDGN 604 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + ++++ P +N G + + T V + +GGT+V+ G+ +++ + IP Sbjct: 605 VTMKVEVNKDTPNTRLNTGAGVAIDNKHVKTEVLVENGGTVVIGGIYTQEVRNNTQRIPF 664 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P +G LF++ + ++ E+ I TP +V Sbjct: 665 FGDLPYIGWLFKSREWIDDKQELLIFITPRIV 696 >gi|325981841|ref|YP_004294243.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212] gi|325531360|gb|ADZ26081.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212] Length = 698 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 32/267 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223 K + L++ E QV ++ I E + + +G + I +S Sbjct: 427 KRIQKLDV-FERQVMIEARIVEATDNFSRNLGARFGIQNASGLGDQTLGVSGNLTGSSAL 485 Query: 224 -SGPSKSFAADFGGKFVSEGGDFSVKG----------VLDRFSFETVLHALERATAIRTL 272 +G S A + + + G + + L ALE R + Sbjct: 486 AAGGGVSGANNLNVNLPAAAATGLLGGPAALGLSLMKINNNRLINLELSALETDQKGRVI 545 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A P + G A G + ++ +SS GATS+ D + L P + G+I + + Sbjct: 546 ASPRVVTAHGVEAIIEQGDRIPFQQATSS-GATSIRFMDATLRLRVKPLITYNGQIDMEL 604 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 +N P+ ++ T V + +GGT+V+ G+ ++ +P+L IP Sbjct: 605 NVNQDRIGAIINQFLPPAINTKQVTTKVLVENGGTVVIGGIFDRTENRVVNKVPMLGDIP 664 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 +LG +FRN+ + E+ I TP ++ Sbjct: 665 VLGHVFRNTTRVDNKRELLIFVTPRIL 691 >gi|254246562|ref|ZP_04939883.1| AscC [Burkholderia cenocepacia PC184] gi|124871338|gb|EAY63054.1| AscC [Burkholderia cenocepacia PC184] Length = 543 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 80/451 (17%), Positives = 150/451 (33%), Gaps = 43/451 (9%) Query: 5 QRTFFTMMSIFLFSS-NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 + T + + P + PP + ++AA + ++IS+ L V + Sbjct: 71 RTALPTETAAAAPTLEGPPIPLAPPARMSDAAA--RQPGDADDARRISLNLQGVGLAAAF 128 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL-DILIERDIAH 122 + V T+ L +A L+ G M +++ A Sbjct: 129 DAIAR-FTGLNIVVGEQVRGTVTLRLNNVRWREAFDTLLDTHGLAMSRRGNVIWVTPAAE 187 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGM-VRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L R + + V +Q L Q ++ +++ Sbjct: 188 LAARERERF---EMHARAADLEPLASRTFVLHYPRAQDVQRLLAGATGQRLLSKRGAAAA 244 Query: 182 KKVMNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 NLL + QV ++ I E + + +G + ++ Sbjct: 245 DPRTNLLFVTDLAPRITQIAGLIDAIDRPSRQVRIEARIVEGEQGFSRNLGARVALRAQG 304 Query: 224 SGPSK-------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 PS AA G F + F++ + L ALE + Sbjct: 305 RPPSAEGASFTANARNALDLAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQ 364 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ P + A G + Y+ G + V + L P + GR+ L Sbjct: 365 IVSRPRVVTADRVKAIVEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVL 423 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + +V++ +G P+ + T VE+ +GGT+ + G+ + + +PLL K Sbjct: 424 DL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGK 481 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKP 421 IP LGALFR+ + E+ + TP +V Sbjct: 482 IPFLGALFRHRAQRDQRNELVVFITPTVVDA 512 >gi|183179752|ref|ZP_02957963.1| fimbrial assembly protein [Vibrio cholerae MZO-3] gi|183013163|gb|EDT88463.1| fimbrial assembly protein [Vibrio cholerae MZO-3] Length = 377 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 58/309 (18%), Positives = 116/309 (37%), Gaps = 28/309 (9%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + ++ + G V + + T + ++++ L+I + QV Sbjct: 69 KASDIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 127 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232 ++ I V+ L+++G + + ++ S + Sbjct: 128 QIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVN 187 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + F V + + L AL+ + ++ P L + Q A G + Sbjct: 188 LASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 247 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350 Y SS+GA++V + L TP + R+ L + + G+ S Sbjct: 248 IPYLES-SSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 306 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR + ++E+ Sbjct: 307 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 366 Query: 411 FIAATPFLV 419 I TP +V Sbjct: 367 LIFVTPKVV 375 >gi|146291667|ref|YP_001182091.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens CN-32] gi|145563357|gb|ABP74292.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens CN-32] Length = 558 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 112/296 (37%), Gaps = 22/296 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEV 298 Query: 206 RRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 Q G Q ++ + A G V+ + F T+++ Sbjct: 299 TLSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINL 358 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHDY 312 L+ + L+ P +TA + Q A G + T S +T +T Sbjct: 359 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 418 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELP 363 G+ L TP + G + L + V + + + +R++DT + Sbjct: 419 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAA 478 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +V+ GL+K + ++ +PLL IP+LG LF+N +++TE+ I P +V Sbjct: 479 SGDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVV 534 >gi|9626321|ref|NP_040655.1| hypothetical protein Pf3_5 [Pseudomonas phage Pf3] gi|138034|sp|P03668|VG430_BPPF3 RecName: Full=Putative assembly protein ORF430; Short=ORF430; Flags: Precursor gi|215375|gb|AAA88381.1| unknown protein [Pseudomonas phage Pf3] gi|215384|gb|AAA88390.1| unknown protein [Pseudomonas phage Pf3] Length = 430 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 107/270 (39%), Gaps = 14/270 (5%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + + V+ +++ QV ++ + E D K++G S S A D V Sbjct: 173 ALESVIQAIDVPVR-QVAIEANVVEASVDWSKRLGLNWGGALSLGNWSAVTAGDLS---V 228 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G + + S + + A+E R ++ PTL + QSAS G + Y+ Sbjct: 229 AAGSSIGFGFLSNTLSLDGLFTAMENEGNGRVVSRPTLLTLDRQSASVLRGTELPYQQS- 287 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + GATSV + L P + I + + P +P + TT Sbjct: 288 AGDGATSVAFKHAALSLEVKPVISPDNSIVIEVLVSRDSPNFSNAIDGVPPIDTNRLVTT 347 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P G T+VL G+ QQ + +S+IP +G LF+ E+ E+ I TP ++ Sbjct: 348 IRVPHGQTVVLGGVYSTINQQGSSRVSGISRIPGIGRLFKKKEHVTEQYELLIFLTPRIL 407 Query: 420 K-PVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 V S D ++FF + Sbjct: 408 GLEVEPEKQSLVFD--------ESFFLGDL 429 >gi|116048592|ref|YP_792609.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115583813|gb|ABJ09828.1| probable type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 803 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V++LL+ QV ++ I EV D + G Q + G Sbjct: 471 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 529 Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 G + G+ + + AL+ L+ P L + +SA Sbjct: 530 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 589 Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 S G + + S+ ++ D G+ L+ P + G + L + EVS Sbjct: 590 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 649 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + R DT++ L G +VL GLL+D++Q +G+P LS +P +G+L Sbjct: 650 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 709 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425 FR + +R +T + + P++V+ A Sbjct: 710 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 737 >gi|320352793|ref|YP_004194132.1| general secretion pathway protein D [Desulfobulbus propionicus DSM 2032] gi|320121295|gb|ADW16841.1| general secretion pathway protein D [Desulfobulbus propionicus DSM 2032] Length = 752 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 112/306 (36%), Gaps = 29/306 (9%) Query: 149 GMVRTIQDSQRAVELSETFLSQSG------RNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 G + + + + + + + V+ L+I V L+ I Sbjct: 320 GKASSAPSAPAISKEVKVVADKETNALIITGPREEYEVVEGVIKKLDIP-RRMVYLEALI 378 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF----VSEGGDFSVKGVLD------ 252 EV+ IG Q + S S A + G L Sbjct: 379 MEVKVSKDFSIGVQWANADGSVVGGFSGNASSPYNMLKQMTTSPGSLPAGFTLGVLEEGI 438 Query: 253 ------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303 + V++A + + +A P + + AS G Y T ++T Sbjct: 439 KIGDVVFPNLGAVVNAYKSDDDVNVIATPQILTTDNKKASIKVGENVPYITSKNTTDAEQ 498 Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 T+ D L TP V + L I EV + PS R A+TTV + Sbjct: 499 DYTNYEYKDVATSLTITPQVNQAEVVRLEIGVEVIKLKNTEATDT-PSTFTRTAETTVVV 557 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-P 421 + T+V+ G++ D + +P+L IP+LG +F++ ++E+T ++I TP +V+ P Sbjct: 558 HNEQTVVIGGMIGQDTTSGEYKVPVLGDIPVLGWMFKSRSNSQEKTNLYIFITPHIVENP 617 Query: 422 VAMRDL 427 + DL Sbjct: 618 AEIADL 623 >gi|152998702|ref|YP_001364383.1| general secretion pathway protein D [Shewanella baltica OS185] gi|151363320|gb|ABS06320.1| general secretion pathway protein D [Shewanella baltica OS185] Length = 704 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 65/303 (21%), Positives = 110/303 (36%), Gaps = 45/303 (14%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + +ET + + V+N L+I QV ++ I EV G Q + Sbjct: 315 IMAHTETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDSVGFGVQWAA 373 Query: 220 TGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRF------------ 254 + G G F++ V G Sbjct: 374 KAGGGTQFNNLGPTIGEIGAGVWQAQDKEGTFITNPSTGQVIGQNPSTKGDVTLLAQALG 433 Query: 255 ------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKT 297 F ++ A+ T LA P++T + Q ASF G + + Sbjct: 434 KVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTAS 493 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 ++S +V + GV L P + + L I+ EVS S+ R+ Sbjct: 494 SNNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRRLT 551 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTV SG +VL GL+ +++Q+ + +P L IPILG LF++S + + + I P Sbjct: 552 TTVMADSGQIVVLGGLINEEVQESVQKVPFLGDIPILGHLFKSSSSKKTKKNLMIFIKPT 611 Query: 418 LVK 420 +++ Sbjct: 612 IIR 614 >gi|254244921|ref|ZP_04938243.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192] gi|126198299|gb|EAZ62362.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192] Length = 803 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V++LL+ QV ++ I EV D + G Q + G Sbjct: 471 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 529 Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 G + G+ + + AL+ L+ P L + +SA Sbjct: 530 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 589 Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 S G + + S+ ++ D G+ L+ P + G + L + EVS Sbjct: 590 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 649 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + R DT++ L G +VL GLL+D++Q +G+P LS +P +G+L Sbjct: 650 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 709 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425 FR + +R +T + + P++V+ A Sbjct: 710 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 737 >gi|24375599|ref|NP_719642.1| MSHA biogenesis protein MshL [Shewanella oneidensis MR-1] gi|24350494|gb|AAN57086.1|AE015842_6 MSHA biogenesis protein MshL [Shewanella oneidensis MR-1] Length = 560 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 103/249 (41%), Gaps = 23/249 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252 QV L+ I EV Q G Q G + G +S+ S+ GV Sbjct: 288 RQVILEAKILEVTLSDGYQQGIQWDNVLGHVGNTNINFGTSAGTGLSDKITSSLGGVTSL 347 Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------- 300 F T++ L+ + L+ P +TA + Q A G + T S Sbjct: 348 SIKGSDFNTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTP 407 Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR 352 +T +T G+ L TP + G + L + V + + + ++P + Sbjct: 408 VTTPQVELTPFFSGIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSNESLELPLAQ 467 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT + SG +V+ GL+K + ++ +PLL IP +G LF+N +++TE+ Sbjct: 468 SEIRESDTVIRAASGDVVVIGGLMKSENIEVVSQVPLLGDIPFVGELFKNRSKQKKKTEL 527 Query: 411 FIAATPFLV 419 I P +V Sbjct: 528 IIMLKPTVV 536 >gi|171059772|ref|YP_001792121.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii SP-6] gi|170777217|gb|ACB35356.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii SP-6] Length = 577 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 60/324 (18%), Positives = 120/324 (37%), Gaps = 47/324 (14%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 + ++ E QV L+ I EV Q G S G + G + S G ++ G ++ Sbjct: 245 VQVSIERQVMLEAKILEVELGSEAQSGINWSAFGRALGGALSIGLVQPGVTLAGSGALTL 304 Query: 248 KGV---------------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 G +F +L LE ++ L+ P + ++ Q A Sbjct: 305 GGTSITPGGNLAASSSGAPFYGLAFQSANFAALLSFLESQGKVQVLSSPRIATLNNQKAV 364 Query: 287 FTSGGQHLYKTV-----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 G LY T S+ST + + G+ L TP + G++ L + Sbjct: 365 LKVGSDELYVTGVSSTTTATGSTSTSTPSVVLQPFFSGIALDVTPQIDDQGQVMLHVHPA 424 Query: 336 VSEPVIGVNAGDMPSY----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +S ++ S V + D+ V + G + + GL+ + ++ + + Sbjct: 425 ISTVSEKQKNINLGSLGSYQLPLASSTVNETDSIVRVRDGQIVAIGGLMSQEQREERSAV 484 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP-DDHYSVEDDAKAFF 444 P L +P++G LFR + + E+ I P +++ D P D + + + Sbjct: 485 PGLGDVPLVGGLFRQTSTVMRKRELVILIKPTVIRA----DGPWPEADTHQPASQLQPWR 540 Query: 445 FNRVNKIYGPKEASEVEGQNYKGA 468 + ++++ P+ A++ Sbjct: 541 PDAMSQLQLPQAATDSPSDAATAP 564 >gi|238796139|ref|ZP_04639650.1| General secretion pathway protein D [Yersinia mollaretii ATCC 43969] gi|238720084|gb|EEQ11889.1| General secretion pathway protein D [Yersinia mollaretii ATCC 43969] Length = 625 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 100/265 (37%), Gaps = 9/265 (3%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGS 222 ++T ++V+ L+I QV ++ I EV+ D +G Q S G Sbjct: 302 AQTNALIINATPDLLRDLEQVITQLDIR-RAQVLVEAIIVEVQDDDNLSLGVQWSNQHGG 360 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S + A+ S G + R ++ + AL LA P++ + Sbjct: 361 GSNFPDTGASASNAIASSLKGVTGLATGFYRGNWSGLFTALRTNNQNDILATPSIVTLDN 420 Query: 283 QSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A F+ G + + S +T +V G+ L P + + L I+ EVS Sbjct: 421 MEAEFSVGQEVPVLSGSQTTTGDNIFRTVDRKSVGIKLKVKPQINKGDSVLLEIEQEVSS 480 Query: 339 PV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 ++ R V + S +V+ GLL Q + +PLL IP +G Sbjct: 481 VAAKAPSGTGDLGATFNSRTVKNAVMVGSNNIVVVGGLLDSTSQDITSKVPLLGDIPGVG 540 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 LFR++ + + + P +++ Sbjct: 541 FLFRSTTQKMVKRNLMLFIRPTIIR 565 >gi|120600401|ref|YP_964975.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1] gi|120560494|gb|ABM26421.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1] Length = 558 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 112/296 (37%), Gaps = 22/296 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEV 298 Query: 206 RRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 Q G Q ++ + A G V+ + F T+++ Sbjct: 299 TLSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINL 358 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHDY 312 L+ + L+ P +TA + Q A G + T S +T +T Sbjct: 359 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 418 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELP 363 G+ L TP + G + L + V + + + +R++DT + Sbjct: 419 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAA 478 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +V+ GL+K + ++ +PLL IP+LG LF+N +++TE+ I P +V Sbjct: 479 SGDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVV 534 >gi|237728710|ref|ZP_04559191.1| type II secretion system protein [Citrobacter sp. 30_2] gi|226909332|gb|EEH95250.1| type II secretion system protein [Citrobacter sp. 30_2] Length = 415 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 80/429 (18%), Positives = 159/429 (37%), Gaps = 34/429 (7%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++ + + + K N ++ + ++ K +++ Sbjct: 1 MKRWIAWIVIALAVGITSALATKPQNVTLVVDDVPVTQVLQALAEQEQKNLVVS------ 54 Query: 68 DVLVSDPTKADVVVHS------PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 P + V+ + + K+ G +++ +G + + + + A Sbjct: 55 ------PDVSGVLSLHLTDVPWKQALQTVVKSAG----LVLRQEGNILHVHSVQWQSENA 104 Query: 122 H----LEMTLRRFIADSN--IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + ++ + I + + + + T N Sbjct: 105 ARQDNEQTRIQASLPLEQRSIILHYADAAELAKAGEKLLSAKGSMTVDKRTNRLLLRDNS 164 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 A ++ +K ++ +++ QV L I + L+++G + S+ + + Sbjct: 165 VALNTLEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWSLADAQQSGAVGNVTTLA 223 Query: 236 GKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 V G ++ E L ALE+ + +A P L A Q AS G + Sbjct: 224 SDLSVATATSRVGFNIGRINGRLLELELSALEQKQQLDIIASPRLLASHLQPASIKQGSE 283 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPS 350 Y+ S +GATSV + + + TPTVL GRI L++ V V+ G++ + Sbjct: 284 IPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLA 343 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ +T VE+ SG TI L G+ + + +PLL IP LG+LFR+ E E+ Sbjct: 344 IDKQEIETQVEVKSGETIALGGIFSHKNKSAADSVPLLGDIPWLGSLFRHDGKEDERREL 403 Query: 411 FIAATPFLV 419 + TP LV Sbjct: 404 VVFITPRLV 412 >gi|296135153|ref|YP_003642395.1| type IV pilus secretin PilQ [Thiomonas intermedia K12] gi|295795275|gb|ADG30065.1| type IV pilus secretin PilQ [Thiomonas intermedia K12] Length = 752 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 67/360 (18%), Positives = 120/360 (33%), Gaps = 55/360 (15%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN- 174 + A + L + V+L G+ + + R + T L+ N Sbjct: 393 NYQKAATVVAMLTGAAGGAQSGTTATPSPVLLPGLSSSAAPTSRILSPRGTVLADPRTNQ 452 Query: 175 ---QYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSI---------- 219 S ++V L+ + QV ++ I E + +G + Sbjct: 453 IFVTDIPSKLEEVAQLIAKIDKPVRQVMIEARIVEASDQFGRSLGVKLGFLDARGIQGGV 512 Query: 220 -----TGSSSG-------------------------------PSKSFAADFGGKFVSEGG 243 G + G P+ A Sbjct: 513 PGTNLVGGTYGTVSGDYLGVANQTNQPGSSAATLADSQFVNLPAFGLAGSLLAGAAPSSL 572 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 S+ L A+E + ++ P + A+ G + Y+ +SS G Sbjct: 573 GISLFNAAANRFINLELSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-G 631 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 AT+VT + L TP + G + + E+ + G + +PS T V++ Sbjct: 632 ATAVTFKKAVLSLDVTPQITPDGNVIM--NVEIHKDSPGASTAGVPSINTNTVTTQVQVE 689 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +GGT+VL G+ Q + +PLL IP+LG LF+N+ + E+ + TP +V Sbjct: 690 NGGTVVLGGIYTSQEQNQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFLTPKIVTNAD 749 >gi|187476847|ref|YP_784871.1| general secretion pathway protein D [Bordetella avium 197N] gi|115421433|emb|CAJ47938.1| general secretion pathway protein D [Bordetella avium 197N] Length = 860 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 69/308 (22%), Positives = 110/308 (35%), Gaps = 31/308 (10%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-------------AADFGGKF 238 QV ++ I EV D + G Q + + + Sbjct: 413 RRAQVLVESMIVEVSEDKASEFGIQWMTGAGNINSNSTSFIGGTNLGGSGLGGVQGPTSL 472 Query: 239 VSEGGDFSVKGVLDRF--------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G S+ V + + A+++ L+ P L + QSAS G Sbjct: 473 DVLGKGLSLGVVKGTVDVLGNKVINLGVLARAMQKDGEANILSTPNLLTLDNQSASILVG 532 Query: 291 GQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 + T SS ++ D G+ L+ P + G + L I EVS Sbjct: 533 KTVPFVTGQYVTSGGNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQEVSSIDTS 592 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + R DT+V + G IVL GLL+D + Q G+P LS IPILGALFR Sbjct: 593 NSTAVSGVVTNKRAIDTSVLVEDGQIIVLGGLLEDSVSQGANGVPGLSSIPILGALFRYD 652 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 +T + + P++V+ R S D Y +A + + + E+ Sbjct: 653 SRRHTKTNLMVFLRPYVVRD-NRRAASLTMDRYDYMRRQQAASQPEAHWLLPQVQTPELT 711 Query: 462 GQNYKGAI 469 +G++ Sbjct: 712 PPGSRGSV 719 >gi|84390819|ref|ZP_00991511.1| fimbrial assembly protein [Vibrio splendidus 12B01] gi|84376622|gb|EAP93499.1| fimbrial assembly protein [Vibrio splendidus 12B01] Length = 564 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 65/312 (20%), Positives = 120/312 (38%), Gaps = 31/312 (9%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + ++D + G V + D T + + + ++ L+I + QV Sbjct: 253 KATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVK-QV 311 Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------------------------TGSSSGPSKSF 230 ++ I V L ++G + + G +S Sbjct: 312 QIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFL 371 Query: 231 AADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + G + F V + + L AL++ + ++ P L + + A Sbjct: 372 NVNLGATSPNASSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQ 431 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y SS+GATSV + L TP + R+ L + P V+ G+ Sbjct: 432 GTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVVKTGTGE 490 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + ++ T V + +G T+VL G+ + + + +PLL +P+LGALFR S N + Sbjct: 491 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGK 550 Query: 408 TEIFIAATPFLV 419 +E+ I TP +V Sbjct: 551 SELLIFVTPKVV 562 >gi|148977866|ref|ZP_01814421.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3] gi|145962935|gb|EDK28206.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3] Length = 549 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 114/310 (36%), Gaps = 34/310 (10%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 ++E ++ G +++ + +A + F + + S++ + Q Sbjct: 223 QLEAAVAHLIGSGNGQSVVVTPQASVITVRAFPDEIREVREFLGVSQQRLQR-------Q 275 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----V 250 V L+ I EV Q GF S S G S+ G Sbjct: 276 VILEAKIMEVTLSDGYQQGFSWSNLSKSIGSGGVVIDRPASTLPPLDAISSLLGGQTNVT 335 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302 + SFE VL ++ + L+ P +TA + Q A G Y T SS Sbjct: 336 ISDGSFEAVLSFMDTQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSAVGSGDNAN 395 Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---------VIGVNAGDMPS- 350 +T G+ L TP + G + L + V E ++P Sbjct: 396 VAPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEKEVKKLNLGSTTGVVELPLA 455 Query: 351 -YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++D+ + G +V+ GL+K + + +P L IP LG LFRN+ ++TE Sbjct: 456 KSSIRESDSVIRARDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTE 515 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 516 LVILLKPTVV 525 >gi|332139923|ref|YP_004425661.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonas macleodii str. 'Deep ecotype'] gi|327549945|gb|AEA96663.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonas macleodii str. 'Deep ecotype'] Length = 547 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 24/266 (9%) Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------ 229 + ++K +N L+I + QV ++ + V D+ +Q+G + + S Sbjct: 280 ASIDEARKTINALDIPVK-QVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGISGSIEGA 338 Query: 230 --------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + + F + ++D + L ALE +A P Sbjct: 339 DTIAGGVVPSIENRLNVNLPVSSAAGSIGFQIASLVDGTILDLELSALESENKGEIIASP 398 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQ 333 +T + A G + Y +SS GATSV + L TP + RI L + Sbjct: 399 RITVANQHEAYIEQGTEIPYVQATSS-GATSVEFKKAVLSLKVTPHITPDNRIILDLVVT 457 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + + + GD + ++ T V + +G TIVL G+ + +PL +P+ Sbjct: 458 QDTRGETVTTSTGDAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGDLPL 517 Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419 +GALFRNS +++ E+ I TP +V Sbjct: 518 VGALFRNSSQLQQKRELLIFVTPKIV 543 >gi|261365347|ref|ZP_05978230.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996] gi|288566287|gb|EFC87847.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996] Length = 711 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 108/271 (39%), Gaps = 30/271 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSSSGP-------- 226 K++ L++ QV ++ I E + + +G + G+S Sbjct: 440 KLIEELDVPTR-QVMVEARIVEAKDGFSRDLGVKFGVAGSKGRNAWGNSWSNAQDNHNTN 498 Query: 227 -----------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + S + + + ++ L + + A E +T++ P Sbjct: 499 SAVLRGDANYPTWSLQPNISLPAAAATNNIALVRALSSGALGLEISASEATGKSKTISNP 558 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + + A+ SG + Y+ SS+GATSV+ + L TP V G++ + ++ Sbjct: 559 RVLTQDRREATIESGTEIPYQEA-SSSGATSVSFKKAVLGLTVTPNVTPDGQVIMTVKIT 617 Query: 336 VSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 P V++ + + +T + GGT+++ G+ ++D +PLL +P++ Sbjct: 618 KDTPQDCTVDSLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDNSDTINKVPLLGDLPVV 677 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR 425 G LF++ E E+ + TP ++ V Sbjct: 678 GNLFKSRAKKEERRELLVFITPRIMDGVGSN 708 >gi|163751641|ref|ZP_02158861.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99] gi|161328467|gb|EDP99622.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99] Length = 681 Score = 173 bits (438), Expect = 7e-41, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 110/280 (39%), Gaps = 25/280 (8%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + + + + + + V L+ + QV ++ + V+ ++ + +G Q IT Sbjct: 399 AVDDRTNTLLVRDTEETLENVHRLIEVLDIPIRQVLIEARMVTVKDNVSEALGIQWGITD 458 Query: 222 SSSGPSKS--------------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 S + S F V + D + L Sbjct: 459 QQGDYGTSGSLRGAQSIANGIIPALADRLNVALPARAGSASIAFHVARLADGTILDMELS 518 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 ALE+ +A P + S Q A++ G + SSS+GAT+V+ + L TP Sbjct: 519 ALEQENRGEIIASPRIVT-SNQKAAYIEQGVEIPYIESSSSGATTVSFKKAVLSLRVTPH 577 Query: 322 VLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 + R+ L ++ V+ G+ S ++ T V + G TIVL G+ + ++ Sbjct: 578 ITPDNRVILDLEITQDSQGAVVATPMGEAVSIDTQRIGTQVLVNHGETIVLGGIYQQNLI 637 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+L IP LG LFR++ + E E+ I T ++ Sbjct: 638 SRVTKVPILGDIPFLGFLFRSTSDSNERQELLIFITAKII 677 >gi|209520029|ref|ZP_03268806.1| type IV pilus secretin PilQ [Burkholderia sp. H160] gi|209499514|gb|EDZ99592.1| type IV pilus secretin PilQ [Burkholderia sp. H160] Length = 569 Score = 173 bits (438), Expect = 7e-41, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 97/242 (40%), Gaps = 15/242 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKF 238 QV ++ I E + +G + S+ G+S+ + + F Sbjct: 329 RPTRQVLIEAQIVEGDHGFSRNLGVRLSLAGTSADGTSKGLSGGADGTVYDLSARPISGF 388 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ L ALE + ++ P + A G + Y+ Sbjct: 389 DAATAGLTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-A 447 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P ++ GR+ L + +V++ +G P+ + T Sbjct: 448 KVGQGISGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGAQTDAGPAINTKHVQT 505 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ GGT+ + G+ + + E +P+L KIPILGALFR+ + +E+ + TP + Sbjct: 506 RVEVEDGGTVSIGGIYETSDRDDVERVPILGKIPILGALFRDRTHSDTRSELAVFITPRV 565 Query: 419 VK 420 V+ Sbjct: 566 VR 567 >gi|295677888|ref|YP_003606412.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002] gi|295437731|gb|ADG16901.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002] Length = 572 Score = 173 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 97/242 (40%), Gaps = 15/242 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKF 238 QV ++ I E + + +G + S+ G+S+ + F Sbjct: 332 RPTRQVLIEAQIVEGEQGFSRNLGVRLSLAGTSADGTSRGLTGGTDGTVYDLSARPISGF 391 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ L ALE + ++ P + A G + Y+ Sbjct: 392 DAATAGLTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-A 450 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P ++ GR+ L + +V++ +G P+ + T Sbjct: 451 KVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQT 508 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ GGT+ + G+ + D + E +P+L KIP+LGALFR+ +E+ + TP + Sbjct: 509 RVEVEDGGTVSIGGIYETDDRDDVERVPVLGKIPVLGALFRHRTHRDTRSELAVFITPRV 568 Query: 419 VK 420 V+ Sbjct: 569 VR 570 >gi|261254112|ref|ZP_05946685.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP 102891] gi|260937503|gb|EEX93492.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP 102891] Length = 563 Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 114/302 (37%), Gaps = 21/302 (6%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + ++ + G + + T Q +++++ L+I + QV Sbjct: 262 KASEIASMIGGEGAISMLSSRGALSVDERTNALLIRDLQPNIDVIQELISALDIPVK-QV 320 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFV 239 ++ I V L ++G + ++ S + Sbjct: 321 QIEARIVTVHEGNLDELGVRWGYHNTNGSTSLGSSIEDNVFGAVPIDDMLNVNLAATSVN 380 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + F V + + L AL+R + ++ P L + + A G + Y Sbjct: 381 ASSIAFQVAKLGSDMLLDLELSALQRESKAEVISSPRLITTNKKPAYIEQGTEIPYLES- 439 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKAD 357 SS+GATSV + L P + R+ L + P + G+ + ++ Sbjct: 440 SSSGATSVAFKKAVLSLKVVPQITPDNRLVLDLSVTQDRPGDIVKTGTGEAVAINTQRIG 499 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V + +G T+VL G+ + + + +P+L +P+LGALFR + ++E+ I TP Sbjct: 500 TQVLVDNGETVVLGGIFQHSVTDAVDKVPMLGDLPLLGALFRRTYQKMGKSELLIFVTPK 559 Query: 418 LV 419 +V Sbjct: 560 VV 561 >gi|15595882|ref|NP_249376.1| type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|218893357|ref|YP_002442226.1| putative type II secretion system protein [Pseudomonas aeruginosa LESB58] gi|9946565|gb|AAG04074.1|AE004503_12 probable type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|218773585|emb|CAW29399.1| probable type II secretion system protein [Pseudomonas aeruginosa LESB58] Length = 803 Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V++LL+ QV ++ I EV D + G Q + G Sbjct: 471 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 529 Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 G + G+ + + AL+ L+ P L + +SA Sbjct: 530 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 589 Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 S G + + S+ ++ D G+ L+ P + G + L + EVS Sbjct: 590 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 649 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + R DT++ L G +VL GLL+D++Q +G+P LS +P +G+L Sbjct: 650 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 709 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425 FR + +R +T + + P++V+ A Sbjct: 710 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 737 >gi|307132897|ref|YP_003884913.1| putative fimbrial transporter [Dickeya dadantii 3937] gi|306530426|gb|ADN00357.1| predicted fimbrial transporter [Dickeya dadantii 3937] Length = 417 Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 76/430 (17%), Positives = 145/430 (33%), Gaps = 31/430 (7%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 MM +F + P + + + +++++ + + V Sbjct: 1 MMLLFSCMLVEARGDEPVSLAFDDVPVQRVLQALADHQQLNLVVAPGVTGNVS------- 53 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ-MLNLDILIERDIAHLEMTLRR 129 ++ + +GQ + +R L R+ Sbjct: 54 ------LNLQQVPWQQALDIILRMGQLTIERQDSVMMVYPDTYMKDRQRQQEELAAKQRQ 107 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + N+ V + V T SQR L+E + V L Sbjct: 108 QLPLQNLSVTL---QYAEAADVATSLQSQRGTLLTERGSVTVDKRTNTLLVRDVVSALEQ 164 Query: 190 IAG--------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 I QV L I + + LK +G + +++ +F E Sbjct: 165 IRPWLGELDKPLAQVQLAAHIVTISSEHLKALGVNWGLGDATTTGQALQMNNFSVSLPVE 224 Query: 242 GGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + L+ + L ALE+ + +A P L Q+AS G + Y+ Sbjct: 225 SPAVNAGFHLAKLNGRLLDLELMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVS 284 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRK 355 S ++G+TS+ + + + TP +L G+I L + + P + ++ + ++ Sbjct: 285 SGASGSTSIEFKEAVLGMEVTPRILHGGQITLNLLISQNMPGRAIKQGEGSEILAIDKQE 344 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V + G TIVL G+ + Q + +P LS +P +G FR+ E+ I T Sbjct: 345 IQTQVTVLDGETIVLGGIFQQQKNQGERQVPGLSALPGIGQWFRSGNQQHTRRELVIFIT 404 Query: 416 PFLVKPVAMR 425 P L++ Sbjct: 405 PTLIQSARRA 414 >gi|170731725|ref|YP_001763672.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3] gi|169814967|gb|ACA89550.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3] Length = 543 Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 73/459 (15%), Positives = 146/459 (31%), Gaps = 57/459 (12%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 R + ++ P++ P A + + + G + + + + Sbjct: 68 RAARAALQTESTAAAPTLEGPPIPLAPPARMSDAMARQPGDA-------DDARRISLNLQ 120 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAH-- 122 + + A + + G+ V G + L ++ + + Sbjct: 121 GVGLAAAFDAIARFTGLN----IVVGEQVRGTVTLRLNNVRWREAFDTLLDTHGLAMSRR 176 Query: 123 ----LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI-----QDSQRAVELSETFLSQSGR 173 A R EM + L + +Q L Q Sbjct: 177 GNVIWVTPAAELAARERERFEMHARAADLEPLASRTFVLHYPRAQDVQRLLAGATGQRLL 236 Query: 174 NQYANSSSKKVMNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGF 215 ++ +++ NLL + QV ++ I E + + +G Sbjct: 237 SKRGAAAADPRTNLLFVTDLAPRITQIAGLIEAIDRPSRQVRIEARIVEGEQGFSRNLGA 296 Query: 216 QHSITGSSSGPSK-------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 + ++ PS AA F + F++ + L A Sbjct: 297 RVALRAQGRPPSAEGTSFTADARNALDLAARPLSGFDAATAGFTLFAAPLSRVLDIELSA 356 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE + ++ P + A G + Y+ G + V + L P + Sbjct: 357 LEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQI 415 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 GR+ L + +V++ +G P+ + T VE+ +GGT+ + G+ + + Sbjct: 416 TPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDV 473 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +PLL KIP LGALFR+ + E+ + TP +V Sbjct: 474 TRVPLLGKIPFLGALFRHRAQRDQRNELVVFITPTVVDA 512 >gi|254253479|ref|ZP_04946797.1| Type II secretory pathway component HofQ [Burkholderia dolosa AUO158] gi|124896088|gb|EAY69968.1| Type II secretory pathway component HofQ [Burkholderia dolosa AUO158] Length = 549 Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 109/308 (35%), Gaps = 34/308 (11%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVT 197 +Q L Q ++ +++ NLL + QV Sbjct: 225 RAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRIAQIASLIDAIDKPSRQVR 284 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGD 244 ++ I E + + +G + ++ P AA G F + Sbjct: 285 IEARIVEGEQGFSRNLGARLALHAQGRPPPGDGAAPATDTRNALDLAARPLGGFDAATAG 344 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ + L ALE + ++ P + A G + Y+ G Sbjct: 345 LTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ-AKVGNGV 403 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P GR+ L + +V++ +G P+ + T VE+ Sbjct: 404 SGVQFRRATLKLEVEPQSTPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVED 461 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 462 GGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHQARRDQRSELVVFITPTVVGARCE 521 Query: 425 RDLSRPDD 432 SR D Sbjct: 522 TAGSRDAD 529 >gi|74317457|ref|YP_315197.1| type II secretion system protein D [Thiobacillus denitrificans ATCC 25259] gi|74056952|gb|AAZ97392.1| type II secretion system protein D [Thiobacillus denitrificans ATCC 25259] Length = 656 Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 88/470 (18%), Positives = 155/470 (32%), Gaps = 68/470 (14%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVLVSDPTK---- 76 P E A + I + ++ +K + L D Sbjct: 177 PAFHKPITLEFRDAPLRNVFDMIARQSGLNFVFDKDVRLDTKATLFARNTPIDEAVDMLL 236 Query: 77 ----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 V + T+ ++ + M+ L D LR + Sbjct: 237 MTGQLSKKVVNANTLLIYPDQP-----QKQKAYQELMVKSFYLGNADAKATMAMLRTLVK 291 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 ++ V+ + +V+ A+ L+E ++ Sbjct: 292 AKDLHVDERLNLLVMRDTP-------DAIRLAERIVAVQDL------------------A 326 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDFSVKGV 250 E +V L+V + EV+R L +G Q+ S P+ S GG + SV V Sbjct: 327 EPEVMLEVEVLEVKRGRLLDLGIQYPTNFSLLNLPPATSSTIGPGGVVTNTTPPPSVLTV 386 Query: 251 LDRFSFETV---------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + + ++ + + LA P + + + A G + T +++ Sbjct: 387 ESLKNITASQIAISPTPGVDLRKQDSDVNILANPRIRVKNREKAKIHIGDKVPVITSNTT 446 Query: 302 TG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRK 355 + + SV+ D G+ L P+VL + +R+ EVS V N R Sbjct: 447 STGVVSESVSYLDVGLKLDVEPSVLMREDVQIRVGLEVSNIVREIRSGNGTLTYQIGTRN 506 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A TT+ L G T VLAGL+ D+ + IP L +P++G LF + R R +TEI + T Sbjct: 507 AGTTLRLKDGETQVLAGLISDEDRSTASRIPGLGDLPLIGRLFSSQRDERNKTEIVLLIT 566 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 P +++ D + + F G A Sbjct: 567 PRVLR----------SDATRLPALTE--FRGGTENAIGGGGAVPFSAPAL 604 >gi|330810080|ref|YP_004354542.1| type II secretion pathway protein D precursor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378188|gb|AEA69538.1| putative type II secretion pathway protein D precursor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 786 Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 28/269 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V++LL+ QV ++ I EV D + G Q G+ G + GG ++ Sbjct: 454 EVIDLLDQR-RAQVVIESLIVEVGEDDASEFGVQWQT-GNLGGSGVIGGVNLGGTGLNLN 511 Query: 243 GDFSVK------------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G S+ G+ + + AL+ L+ P L + ++ Sbjct: 512 GKTSIDVLPQGLNLGVVNGTVDIPGIGKILDLKVLARALKSKGGTNVLSTPNLLTLDNEA 571 Query: 285 ASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 AS G + + +S+ +VT + G+ L+ P + G + L I EV Sbjct: 572 ASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQEV 631 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 S ++ R DT++ L G +VL GLL+D Q + +P LS IP +GA Sbjct: 632 SSVDNRASSTTGIVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSTIPGIGA 691 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMR 425 LFRN R +T + + P++++ A Sbjct: 692 LFRNERRQITKTNLMVFLRPYIIRDTAAG 720 >gi|91776764|ref|YP_546520.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91710751|gb|ABE50679.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 657 Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 83/461 (18%), Positives = 156/461 (33%), Gaps = 74/461 (16%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV----SDPTKA 77 P E A I + + + I+ L+K I P V + D Sbjct: 177 PAFNKPVSLELRDANIKMVFEALSRATGINFILDKDIK---PETKATVFIKKSPVDEAIE 233 Query: 78 DV--------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 V V S T +F + + ++ L + ++ Sbjct: 234 MVLATNGLQKKVLSENTALVFPNTAAK-----LKDYQDLVIRNFYLTNAKAKDVSTMIKT 288 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + ++ + + +V+ V ++E ++ + Sbjct: 289 MLKTKDVHTDERLNMIVIRDTP-------EVVRIAEKLVAANDL---------------- 325 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + +V L++ + EV R+ L+++G + S A G + + S Sbjct: 326 --ADPEVMLEIEVMEVSRERLQELGIDYP---------TSLTASAGLSIDAMRSNNSGTY 374 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATS 306 + + L+ + I LA P + + A G + T ++ G + S Sbjct: 375 LFNS---NPTLNFRKTTGDINILANPRIRVRNNDKAQVLVGDKVPVITTVATAGVGSSQS 431 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELP 363 V D G+ L P + + ++I EVS G + R A T + L Sbjct: 432 VQYLDVGLKLEAEPRITLDDFVNIKIALEVSSLGSSTTLNGGGVVYQIGTRNASTLLRLK 491 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G T +LAGL+ D+ ++ +P L IP+LG LF N NR++TEI +A TP +V ++ Sbjct: 492 DGETQILAGLINDEERRNTSRLPGLGDIPLLGRLFSNQTDNRKKTEIVLAITPHVVNNIS 551 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 E + ++ N I + + Sbjct: 552 -----------RPESEVLEYWSGTENGISDHPQINVPGTGA 581 >gi|186897240|ref|YP_001874352.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis PB1/+] gi|186700266|gb|ACC90895.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis PB1/+] Length = 500 Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85 P E A +++ + +++++ + + + + +V P +A ++ Sbjct: 113 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 168 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 L + G ++ + ++ A +TL A++ + + Sbjct: 169 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 224 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L G + + S A + + T L + A + + L + QV L I + Sbjct: 225 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 280 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262 + L+++G + G G + DF SV + E L A Sbjct: 281 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 339 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE+ + +A P L Q+AS G Y A ++ + + + TP + Sbjct: 340 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 399 Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L G+I L ++ + P I + +M ++ T V + G TIVL G+ + +Q Sbjct: 400 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 459 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 460 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 500 >gi|222111308|ref|YP_002553572.1| type II and iii secretion system protein [Acidovorax ebreus TPSY] gi|221730752|gb|ACM33572.1| type II and III secretion system protein [Acidovorax ebreus TPSY] Length = 356 Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 142/342 (41%), Gaps = 20/342 (5%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 +G Q+ + A M LR+ ++ D I V V D VVL GM + + + Sbjct: 5 RNGTQINYEVTVSADHHAKTAMELRQLLSHDKGINVSAVGDKVVLDGMYANQDSAAKIQK 64 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + + + + + E V L V + EVR+ L IG + S G Sbjct: 65 IVKAYPQVLNLVRERPEDQ-------LVVPEQMVQLDVKVVEVRKQALDNIGVKWSNLGV 117 Query: 223 SSGPSKSFAADFGGKF-----------VSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 + + + ++ + + +VL+ LE T Sbjct: 118 AGPTFATSGYFYANSANFRGLNQEGYPITTPARPFISYLGLATQITSVLNFLESNGDSWT 177 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP ++++SG S+ GG+ VSS G SV YGV+L F P + G + Sbjct: 178 LAEPRISSVSGGSSKVQVGGEIPIP-VSSGFGQLSVVYKPYGVILEFKPVIDKAGNVRSS 236 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 I EVS+P G ++ + +T V L T+V++GLLK + KEGIP++ + Sbjct: 237 IVAEVSQPDRSAGQGQFVAFTTNRTETEVSLKQNETLVISGLLKSVGARNKEGIPVIGRA 296 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 P+LG LF E+TE+ + TP + P A R ++ Sbjct: 297 PVLGRLFSTQEMTNEQTEMLVVVTPRIHTPAADRAQVLASEN 338 >gi|160873279|ref|YP_001552595.1| general secretion pathway protein D [Shewanella baltica OS195] gi|160858801|gb|ABX47335.1| general secretion pathway protein D [Shewanella baltica OS195] gi|315265506|gb|ADT92359.1| general secretion pathway protein D [Shewanella baltica OS678] Length = 705 Score = 173 bits (437), Expect = 9e-41, Method: Composition-based stats. Identities = 62/304 (20%), Positives = 108/304 (35%), Gaps = 46/304 (15%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + +ET + + V+N L+I QV ++ I EV G Q + Sbjct: 315 IMAHAETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAS 373 Query: 220 TGSSSGPSKSFAADFG--------------------------------------GKFVSE 241 + G + Sbjct: 374 KSGLGTQFNNLGPTIGEIGAGIWQAQDVKASQTCTGSGDNQTCTDNPDTKGDVTLLAQAL 433 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YK 296 G + + F ++ A+ T LA P++T + Q ASF G + Sbjct: 434 GKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTA 493 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 + S+S +V + GV L P + + L I+ EVS S+ R+ Sbjct: 494 SSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRRL 551 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 TTV SG +VL GL+ +++Q+ + +P L IPI+G LF++S + + + I P Sbjct: 552 TTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKP 611 Query: 417 FLVK 420 +++ Sbjct: 612 TIIR 615 >gi|254487874|ref|ZP_05101079.1| general secretion pathway protein D [Roseobacter sp. GAI101] gi|214044743|gb|EEB85381.1| general secretion pathway protein D [Roseobacter sp. GAI101] Length = 644 Score = 173 bits (437), Expect = 9e-41, Method: Composition-based stats. Identities = 76/414 (18%), Positives = 149/414 (35%), Gaps = 33/414 (7%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 + I E + + + + + + + + + P A Sbjct: 200 AGTVATAISEVLGPAGTGARLSVDVSSNVLLVRGTQRDISQIRSLARAMDTSPRVAQSET 259 Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141 S ++ G+A ++ + D+ + +L A+ + + Sbjct: 260 VSTS---IYRLQFGEATIVADLVRNTLTGSTDL-----TNPVAASLGEDPANPDAQSFG- 310 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 G ET Q + +++ L++ QV ++ Sbjct: 311 ------SGPDAAPISPVSVQASIETNSVIVRGTQRQLAEVSQLIKALDVRRP-QVMIEAA 363 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------------SEGGDFSVKG 249 I EV D+ +++G Q I ++ S + + G + + Sbjct: 364 IVEVSGDVAERLGVQLGIGENTETGSIAATSFGNGGGSLQNVLVALGQSNAAALSTGLSV 423 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGAT 305 L SF ++ AL +T+ L+ P++T + QSA+ G ++T A Sbjct: 424 GLASDSFGALIQALNTSTSANLLSTPSVTTMDNQSATIVVGQNVPFRTGRLTTDGGNVAE 483 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364 + D G+ + P + + G + L I+ EVS V R +TTV + Sbjct: 484 VIEREDVGITMVVKPRITAGGVVQLEIEQEVSSLTNQAVTGAADLVTNRRVINTTVLAEN 543 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 GGT+VL GL+ DD Q + +PLL +P+LG LF++ +R + +F+ P + Sbjct: 544 GGTVVLGGLITDDRLQNNQKVPLLGDVPVLGNLFKSRNNSRSKRTLFVFLRPTI 597 >gi|17548364|ref|NP_521704.1| putative GSPD-related protein [Ralstonia solanacearum GMI1000] gi|17430610|emb|CAD17294.1| putative gspd-related protein [Ralstonia solanacearum GMI1000] Length = 754 Score = 173 bits (437), Expect = 9e-41, Method: Composition-based stats. Identities = 81/427 (18%), Positives = 156/427 (36%), Gaps = 55/427 (12%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 + + + P E A + + + ++ +K ++ V V + + T A+ Sbjct: 176 ALSAAFRKPISLEFRDAQMRQVFEVLSRASGLNFVFDKD--VRTDQKV-TVFLRNSTVAN 232 Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 VV V ++ ++ + + +L D + T Sbjct: 233 VVNTVLLTNQLEQRVLDGNSILIYPNTPAK-----QRDYQPLTVRTFVLSNSDAKDVANT 287 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 ++ + +I V+ + +V+ IQ +++ V + E Sbjct: 288 VKTILKTRDIVVDEKRNMIVMRDTPDAIQAAEKLVAVHEM-------------------- 327 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 E +V L+V I EV+R L+ +G Q S + + S + Sbjct: 328 -----PEPEVMLEVEILEVKRSRLQDLGIQLPSQLSLTPLASSSGGTLTLDDLRHLNPTR 382 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303 + + + ++A LA P + + + A G + T +S+ Sbjct: 383 IGATVSPLNVN--VNAAVTD--TNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGFV 438 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360 A +V D G+ L PTV + +RI EVS+ V + R A T + Sbjct: 439 AENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSIAYEIGTRNATTLL 498 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G +LAGL++D+ + +P L IP LG LF N+ ++EI ++ TP +++ Sbjct: 499 RLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRVIR 558 Query: 421 PVAMRDL 427 P +L Sbjct: 559 PAQRPNL 565 >gi|188997001|ref|YP_001931252.1| type II and III secretion system protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932068|gb|ACD66698.1| type II and III secretion system protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 602 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 97/248 (39%), Gaps = 20/248 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------- 238 Q+ ++ I +V LK +G Q + ++ + + GG Sbjct: 353 RPYQIAIEARIVQVSTSNLKDLGIQWGGSATNIDNNNTKIITGGGSTSVISGGRYAVDFP 412 Query: 239 ---VSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + G F++ V + L AL+ + L++P + I G++A + G + Sbjct: 413 SSSATFPGGFAIGFVFGGLQNFLDVRLSALQSIGRSKILSKPQIVTIDGETAEISQGYEV 472 Query: 294 LYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 Y T ++ G T SV+ + L+ TP + G I + I P P Sbjct: 473 PYTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDIIITQDIPDFKNLILGNPPI 532 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + + + V G I + G+L+ G+P L IPILG LF+ + + E+ Sbjct: 533 QTKTVTSKVVAKDGSVIAIGGILEKTEDLKDSGVPGLMNIPILGYLFKENYKQEKTNELL 592 Query: 412 IAATPFLV 419 I +P +V Sbjct: 593 IFLSPRIV 600 >gi|153870872|ref|ZP_02000179.1| Bacterial type II and III secretion system protein [Beggiatoa sp. PS] gi|152072664|gb|EDN69823.1| Bacterial type II and III secretion system protein [Beggiatoa sp. PS] Length = 698 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 58/363 (15%), Positives = 125/363 (34%), Gaps = 37/363 (10%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + +G +I + + + ++ ++ I LE FI + + + + + G Sbjct: 336 RKIGNVAMIDLKKNIDERKQRELSNKKKIKELESLYTEFIRINYAKAKDIEALLRTSGQH 395 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + T + +K++ L+ QV ++ I + K Sbjct: 396 SFLSSRGNVSTDERTNTLIIQDTAAKIAEIRKLLAELDTPVR-QVLIESRIVIANNNFSK 454 Query: 212 QIGFQHSITGS----------------------------------SSGPSKSFAADFGGK 237 +G + + + G ++F Sbjct: 455 ALGVKFGYSANEDLGFGNGIVFGGKKGGDTTFSGGTGFSSDNTATGEGQGENFIVSLPAA 514 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + G + + + L A++ + ++ P + + Q A T G + Y Sbjct: 515 IANPAAVGLAIGKIGSYLLQLELSAMQSEGSGEIISNPRIITGNQQEAIITQGTEIPYVQ 574 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + V + L TP + R+ + + V + GVN G S R+ Sbjct: 575 QAGVGSVAQVQFKQAVLELKVTPQITPDDRVNMELA--VKKDSPGVNIGGNLSIDKREVK 632 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V + +G T+VL G+ + IP + +P++G LF+N + +++E+ I TP Sbjct: 633 TNVLVDNGETVVLGGVYERTRSNAINRIPFFADLPLIGELFKNRSKSDDKSELLIFVTPK 692 Query: 418 LVK 420 ++K Sbjct: 693 ILK 695 >gi|260771969|ref|ZP_05880886.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio metschnikovii CIP 69.14] gi|260612836|gb|EEX38038.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio metschnikovii CIP 69.14] Length = 663 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 104/281 (37%), Gaps = 46/281 (16%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------------- 223 V++ L+I QV ++ I E+ +G Q Sbjct: 323 VISQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLKDGAVIQYGNSGAQVGQVMVGLE 381 Query: 224 -------------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + + D+ + G + + ++ A+ Sbjct: 382 QAKDTTESRAVYDRDGNFLRNETTTKKGDYSTLASALSGVNGAALGVMMGDWTALISAVS 441 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFT 319 ++ L+ P++T + ASF G + T ++ +V + G+ L Sbjct: 442 STSSTNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSNNDNPFQTVERKEVGIKLKVV 501 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L I+ EVS + A D+ + R+ +TTV + G +VL GL+ + Sbjct: 502 PQINEGDSVQLSIEQEVSNVLGAQGAVDV-RFAKRQLNTTVMVQDGQMLVLGGLIDERTA 560 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P+L IP+LG LFR++ E+ + + P +++ Sbjct: 561 ESESKVPILGDIPLLGYLFRSTNTTVEKKNLMVFIKPTIIR 601 >gi|218782965|ref|YP_002434283.1| general secretion pathway protein D [Desulfatibacillum alkenivorans AK-01] gi|218764349|gb|ACL06815.1| General secretion pathway protein D [Desulfatibacillum alkenivorans AK-01] Length = 716 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 64/350 (18%), Positives = 131/350 (37%), Gaps = 43/350 (12%) Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-TIQDSQRAVELSETFLSQS 171 + ++ A + + + + + ++ V+ V+ + + ++ + Sbjct: 324 VVYLQNATAEEVVKVLQALPGKQTDTKNKAEAPVVSKDVQISADKATNSIIIVA------ 377 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227 ++ K V+ L+I V ++ I EV D ++G + + + Sbjct: 378 --DKEDFKVLKDVIEKLDIP-RSMVYIEALIMEVSTDKAFELGVEWRLGDNFEVNGDQAV 434 Query: 228 ----------------KSFAADFGGKFVSEGGDFSVKGVLDR--------FSFETVLHAL 263 A+ FS+ + + + V+ A Sbjct: 435 GWAGSGGAGSEGAYTLFPTTAEIASGVAGFPTAFSMGVIGENIKIGDIYFPTLGAVMRAY 494 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFT 319 + + + L+ P + A + + + G Y T ++ TS D GV L T Sbjct: 495 KNDSDVHILSAPHILATNNEESEIYVGKNVPYVTRQDTSSSSVDYTSYEYRDVGVTLKIT 554 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L + EV+ + P+ RKADTTV + G TIV+ GL+ + + Sbjct: 555 PQISQERLVRLDVFQEVTRLIETAGTTTQPTTYKRKADTTVIVKDGNTIVIGGLIDESTE 614 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 +P L IP LG FR+ RE+T +++ TP +++ P +++S Sbjct: 615 GGTYKVPCLGDIPWLGWAFRSKTEKREKTNLYVFLTPRIIQTPTEAKEIS 664 >gi|149377297|ref|ZP_01895043.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola DG893] gi|149358394|gb|EDM46870.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola DG893] Length = 694 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 101/256 (39%), Gaps = 32/256 (12%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------------ 235 QV+++ I + ++ + +G + S + G Sbjct: 437 RQVSIEARIVRAQTNVAENLGVRWGGAAYDVRGDGSVISVGGSQGAVGEARDAANGNNNT 496 Query: 236 -----------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G F+V D F + L ALE +++P + Q+ Sbjct: 497 ITFPGALAVDLGVTGQGASSFAVGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQT 556 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A SG + Y+ SS+GATSV+ + + L TP + +I + + V++ G Sbjct: 557 AKIKSGEEIPYQEA-SSSGATSVSFKEAALSLEVTPQITPDDKIIMDLV--VNQDSRGEV 613 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ + T V + +G T+VL G+ + ++ P L IP LG LF+ + Sbjct: 614 TAGIPAINTNEVTTQVLVGNGETVVLGGIFQSEVATTTTKTPFLGDIPYLGRLFKRTEHI 673 Query: 405 REETEIFIAATPFLVK 420 E +E+ I TP ++K Sbjct: 674 DERSELLIFITPKIIK 689 >gi|86147328|ref|ZP_01065642.1| fimbrial assembly protein [Vibrio sp. MED222] gi|85834893|gb|EAQ53037.1| fimbrial assembly protein [Vibrio sp. MED222] Length = 564 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 65/312 (20%), Positives = 120/312 (38%), Gaps = 31/312 (9%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + ++D + G V + + T + + + ++ L+I + QV Sbjct: 253 KATDIADMIGGEGAVSMLSERGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVK-QV 311 Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------------------------TGSSSGPSKSF 230 ++ I V L ++G + + G +S Sbjct: 312 QIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFL 371 Query: 231 AADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + G S F V + + L AL++ + ++ P L + + A Sbjct: 372 NVNLGATSPSASSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQ 431 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y SS+GATSV + L TP + R+ L + P V+ G+ Sbjct: 432 GTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVVKTGTGE 490 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + ++ T V + +G T+VL G+ + + + +PLL +P+LGALFR S N + Sbjct: 491 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLPVLGALFRRSYENVGK 550 Query: 408 TEIFIAATPFLV 419 +E+ I TP +V Sbjct: 551 SELLIFVTPKVV 562 >gi|296390960|ref|ZP_06880435.1| general secretion pathway protein D [Pseudomonas aeruginosa PAb1] Length = 786 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V++LL+ QV ++ I EV D + G Q + G Sbjct: 454 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 512 Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 G + G+ + + AL+ L+ P L + +SA Sbjct: 513 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 572 Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 S G + + S+ ++ D G+ L+ P + G + L + EVS Sbjct: 573 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 632 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + R DT++ L G +VL GLL+D++Q +G+P LS +P +G+L Sbjct: 633 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 692 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425 FR + +R +T + + P++V+ A Sbjct: 693 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 720 >gi|194291071|ref|YP_002006978.1| general secretory pathway protein d, type II secretion system [Cupriavidus taiwanensis LMG 19424] gi|193224906|emb|CAQ70917.1| General Secretory Pathway protein D, type II secretion system [Cupriavidus taiwanensis LMG 19424] Length = 831 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 63/282 (22%), Positives = 101/282 (35%), Gaps = 39/282 (13%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------- 242 A QV ++ I EV ++G Q SSS + + A + Sbjct: 441 ARRAQVYIESMIVEVTATQASELGIQWQGLISSSSGNNNVFAGTNFGTGGQNILNLTLAG 500 Query: 243 ---------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G ++ V +L AL ++ L+ P L + Sbjct: 501 ALADSNRSAGIVAAQQLVPDIGGLNLGIVNRAMGLGALLRALGTNGSVNLLSTPNLITLE 560 Query: 282 GQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + A G T S + T + D G+ L P + G + ++I Sbjct: 561 NEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIF 620 Query: 334 TEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 E S V N P+ VR +T V + G IVL GL++D+ + +PLL IP Sbjct: 621 QESSNVVQATANLIQGPTTNVRSIETNVLVDDGQIIVLGGLIEDNYGDGVQKVPLLGDIP 680 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +G LFR NR +T + + P++++ A D Y Sbjct: 681 WIGGLFRYENKNRSKTNLLVFLRPYVMR-TAGATDRLTADRY 721 >gi|217969269|ref|YP_002354503.1| type IV pilus secretin PilQ [Thauera sp. MZ1T] gi|217506596|gb|ACK53607.1| type IV pilus secretin PilQ [Thauera sp. MZ1T] Length = 711 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 91/255 (35%), Gaps = 27/255 (10%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQ--------HSITGSSSGPSKSF------------- 230 QV ++ I E + + +G + I + Sbjct: 450 APRQVLIEARIVEANKTFSRDLGVRLGLGKSKPWKINDGGAQIGFGSSTLGGSAGSSGSF 509 Query: 231 ---AADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSA 285 A G + G F++ + L ALE R ++ P + + A Sbjct: 510 RPETATSGADIQNPYGSFALSIFNSSVTRFLNLELQALESDGRGRVVSSPRVLTANQVEA 569 Query: 286 SFTSGGQHLYK-TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 G Q + G +V D + L P++ GRI L + P Sbjct: 570 LIKQGTQIPIPIPSTQVGGEPTVEYKDAVLSLKVRPSITPDGRIQLSVLVNKDRPDFTNV 629 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 PS + T V + +GGT+V+ G+ ++ ++ +P+L ++P+LG LFR Sbjct: 630 VLGRPSIDTKSVQTEVTVENGGTLVIGGVYEEQELNGEDRVPVLGELPVLGGLFRTRSTI 689 Query: 405 REETEIFIAATPFLV 419 E+ E+ + TP LV Sbjct: 690 AEKKELLVFITPRLV 704 >gi|149909433|ref|ZP_01898088.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Moritella sp. PE36] gi|149807543|gb|EDM67492.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Moritella sp. PE36] Length = 747 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 132/336 (39%), Gaps = 31/336 (9%) Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSD-TVVLHGMVRTIQDSQRAVELSETFLS 169 D++ ++++ L FI I D T +L ++ S+ V E + Sbjct: 412 RRDLVSKKEVEDLAELHSEFI---QISFAKAGDITKLLSQKDSSLLSSRGTVSFDERTNT 468 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------ 223 ++ +S K + + QV ++ + V +I ++G + ++GS+ Sbjct: 469 LLIKDTATVIASVKRIIEVLDVPVRQVIIEARMVSVVDNISDELGIRWGLSGSTDIGSGF 528 Query: 224 ------------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + + F + G+ + + L ALE Sbjct: 529 GLSSGSIEGNDSLAGGSVPAIGDRLNVNLPVASPAGSIAFQIAGLANGQILDLELSALEA 588 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 +A P +T +SA G + Y SS+GAT++ + L TP + Sbjct: 589 EQKAEVIASPRITTTDKKSAYIEQGTEIPYVES-SSSGATTIAFKKAVLGLWVTPHITPD 647 Query: 326 GRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +I L ++ + G+ S + T V + +G TIVL G+ K +I+Q+ Sbjct: 648 NKIILDLKINQDTRGEDVKTVGGEAVSIDTQVISTQVLVENGETIVLGGIFKHEIKQIVT 707 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+L IP LG LFR+++ ++ E+ I TP +V Sbjct: 708 KVPILGDIPWLGVLFRSTKNISQKRELLIFVTPKVV 743 >gi|126176026|ref|YP_001052175.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS155] gi|217971714|ref|YP_002356465.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS223] gi|125999231|gb|ABN63306.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS155] gi|217496849|gb|ACK45042.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS223] Length = 559 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEV 298 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261 Q G Q G + G +S+ ++ GV F T+++ Sbjct: 299 TLSDGYQQGIQWDNVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMIN 358 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311 L+ + L+ P +TA + Q A G + T S +T +T Sbjct: 359 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVGGTPPVTTPQVELTPFF 418 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVEL 362 G+ L TP + S G + L + V + + + ++P + +R++DT + Sbjct: 419 SGIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRA 478 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +++ GL+K + ++ +PLL IP LG LF+N +++TE+ I P +V Sbjct: 479 ASGDVVIIGGLMKSESIEVVSQVPLLGDIPYLGELFKNRSKQKKKTELIILLKPTVV 535 >gi|313110077|ref|ZP_07795979.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa 39016] gi|310882481|gb|EFQ41075.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa 39016] Length = 714 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 95/269 (35%), Gaps = 35/269 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228 ++++ L+I QV ++ I E K +G + + Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWNGYGKDGNIGIKDEDG 496 Query: 229 ----------SFAADFGGKFVSE---------GGDFSVKGVLDRFSFETVLHALERATAI 269 +F K S + + D + L A+E+ Sbjct: 497 MNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 +++P + ++A G + Y+ SSS ++ + + + L TP + RI Sbjct: 557 EIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + ++ P +P + + + + G TIV+ G+ + + + +P L Sbjct: 616 VEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLG 675 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418 +P LG LFR + + E+ + TP + Sbjct: 676 DLPYLGRLFRRDTVSDVKNELLVFLTPRI 704 >gi|329900875|ref|ZP_08272624.1| General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) [Oxalobacteraceae bacterium IMCC9480] gi|327549348|gb|EGF33919.1| General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) [Oxalobacteraceae bacterium IMCC9480] Length = 696 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 59/279 (21%), Positives = 104/279 (37%), Gaps = 31/279 (11%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------SITGSSSGPSK 228 V++ L++ QV ++ I EV + G Q + T S+ + Sbjct: 359 VIDQLDVR-RAQVYIESLIVEVSAKKAAEFGIQWLGLSGNSTSNYRVGAASTFSTDNIAG 417 Query: 229 SFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 AA G + G ++ + + ALE L+ P L + + A Sbjct: 418 LAAASKAGTIPAVGAGLTLGVFRQINGALGLGALARALESDDGTNILSMPNLITLDNEEA 477 Query: 286 SFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 G + T + +V D G+ L P + G + + I E Sbjct: 478 RIIVGQNVPFITGQYTTQASGGGSGVNPFQTVERKDVGLQLRVRPQISEGGTVKMAIYQE 537 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S N + R DT V + G +VL GL++D ++ E +P L +P++G Sbjct: 538 TSAVQSSTNTAGI-ITSKRSIDTNVLVDDGQIVVLGGLIEDTLEDGNERVPGLGDLPVVG 596 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 LF+ + NR +T + + P +++ + LS D Y Sbjct: 597 NLFKYQKRNRTKTNLMVFLRPTIIR-SNEQSLSLSGDRY 634 >gi|149195014|ref|ZP_01872107.1| type II and III secretion system protein:NolW-like protein [Caminibacter mediatlanticus TB-2] gi|149134935|gb|EDM23418.1| type II and III secretion system protein:NolW-like protein [Caminibacter mediatlanticus TB-2] Length = 579 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 9/244 (3%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFVS- 240 ++N L+ ++QV +K I E+ QIG + + S S + +A+ GG ++ Sbjct: 303 IINALD-TPKEQVYVKARILEISNTKAAQIGNRLGLYAGSGTTSGLYTLSANLGGPAIAF 361 Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYK 296 ++ + + L LE A + L+EP++ I+ ++ G L Sbjct: 362 DVASLGLTIPTIKQGIALGATLDLLETYGAAKKLSEPSILCINNTPSTIYVGKTVSVLTG 421 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 +S+T + S T D G+ L P + S ++ L + + + + G + +MP R Sbjct: 422 KTTSTTTSESYTRQDIGLTLKVKPRIDSDNKVALNVDAVIEDLLPG-SPVNMPITSKRTI 480 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +TT + +G +I++ GL++D+ +PLL IPILGALFR+ + N+++T + I TP Sbjct: 481 NTTTIVRNGQSIIIGGLVRDNKDITLNKVPLLGDIPILGALFRHKQINKDKTTLVIVLTP 540 Query: 417 FLVK 420 ++VK Sbjct: 541 YIVK 544 >gi|114564903|ref|YP_752417.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina NCIMB 400] gi|114336196|gb|ABI73578.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina NCIMB 400] Length = 556 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 23/249 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250 QV L+ I EV Q G Q +G + + G+ +S ++ GV Sbjct: 285 RQVILEAKIIEVTLSDGYQQGIQWENVLGHAGSTNIDFSTSAGQGLSNAITSAIGGVTSI 344 Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------- 300 F T+++ L+ + L+ P +TA + Q A G + T S Sbjct: 345 NFTGSDFSTIINLLDTQGDVDVLSSPRVTASNNQKAVIKVGNDEYFVTDVSSTTVAGTTP 404 Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMPSYR 352 +T +T G+ L TP + G + L + V + + ++P + Sbjct: 405 VTTPQVELTPFFSGIALDVTPQIDEYGNVILHVHPSVIDVTSQTKEIKISDSTLELPLAQ 464 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT + SG +V+ GL+K + + +PLL IP LG F + ++++TE+ Sbjct: 465 SEIRESDTVIRAASGDVVVIGGLMKSENIETVSKVPLLGDIPFLGEAFTSRTKSKKKTEL 524 Query: 411 FIAATPFLV 419 I P +V Sbjct: 525 IIMLKPTVV 533 >gi|262375159|ref|ZP_06068393.1| general secretion pathway protein D [Acinetobacter lwoffii SH145] gi|262310172|gb|EEY91301.1| general secretion pathway protein D [Acinetobacter lwoffii SH145] Length = 754 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 103/268 (38%), Gaps = 31/268 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + ++ L+I QV ++ I EV Q+G Q ++ SSG +FG + Sbjct: 378 ESAIDQLDIR-RQQVLIEAAIIEVEGTDADQLGVQWALGDISSGIGLVNFDNFGTSLKNI 436 Query: 242 GGDFSV-----------------------KGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + R + ++ AL+ T L+ P++ Sbjct: 437 AAGYLTGGGAGAASAVGAGSSLVLGDYREGSDGSRRLYGAMIQALKETTKSNLLSTPSIV 496 Query: 279 AISGQSASFTSGGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + A G + T S STG T++ D GV L P + G + L Sbjct: 497 TMDNEEAYIVVGENVPFVTGSVSTGAAGVANPYTTIERKDVGVTLKVVPHIGEDGTVRLE 556 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EVS+ R T++ G TIVL GL+ D+ ++ +P L I Sbjct: 557 VEQEVSDVKASKGQAQDLVTSKRAIKTSILAEHGQTIVLGGLISDNTSYGRQAVPGLGAI 616 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P LG LFR+ + ++ + I P +V Sbjct: 617 PGLGRLFRSEGKSNQKRNLLIFIHPTIV 644 >gi|254282305|ref|ZP_04957273.1| general (Type II) secretion pathway (GSP) D protein [gamma proteobacterium NOR51-B] gi|219678508|gb|EED34857.1| general (Type II) secretion pathway (GSP) D protein [gamma proteobacterium NOR51-B] Length = 346 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 15/239 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG--------- 243 QV ++ +I EV G + + G G + + G Sbjct: 79 PTQVMIEASIIEVTLTDELSYGLEWTFNGQLGGSEYNGVGTLSDGNFNLGSPDSPLGQLA 138 Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTV 298 FS VL AL + I ++ P++ + +A G Q Sbjct: 139 RGFSYSVTGGSGDIVAVLQALSTQSLINVISSPSVMVLDNNTAYIHVGDQVPIRSGSTVS 198 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 + ++T D GV L P+V + G + L ++ V++ ++ + R+ + Sbjct: 199 NGGNVTENITYRDTGVKLSVRPSVNAGGLVTLDVEQSVTDVGP-IDVTGNRRFLEREIMS 257 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V + SG ++VL GL++++ +EG+P L K+P++GALF + + TE+ + TP Sbjct: 258 RVAVRSGESVVLGGLIRENATNSEEGVPWLHKVPLIGALFGTTDKSDTRTELVVMITPR 316 >gi|238792887|ref|ZP_04636517.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909] gi|238727741|gb|EEQ19265.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909] Length = 406 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 76/418 (18%), Positives = 162/418 (38%), Gaps = 21/418 (5%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 ++ + + + +P E + A I + + +++++ + + + + + DV Sbjct: 3 LLVLLTSRAFSAKTGVPVTVEFHDAPITVVLQALADYQQLNLVIAAGVEGNLSLRLADV- 61 Query: 71 VSDP-TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 P +A ++ + + + G ++ H+ ++ +L Sbjct: 62 ---PWEQALAIILRMGRLKV--EREGSVMMVFTEHEMQERRQRAEQKNAPEPLNNFSLAL 116 Query: 130 FIADSNIRVEMVSDTVVL-HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 AD+ E V+D++ L G + + S + + T L + A + L Sbjct: 117 QYADA----EQVADSLTLPEGGLLSPLGSVVVDKRTNTLLIRDTPASLALLKNWLAEMDL 172 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDF 245 + QV L I + R+ L+++G + + + S +F + + F Sbjct: 173 PL---QQVQLAAHIVTMSREHLQELGVRWGMDDAKQARSLRVNNFNVNLPLPNSALSAGF 229 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +V + R + ALE+ + +A P L Q+AS G Y G Sbjct: 230 NVARIGGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGGP 288 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELP 363 ++ + + + TP +L G+I L ++ + P + + + ++ T + + Sbjct: 289 TIEFKEAVLGMEVTPKILRNGKITLNLKISQNMPGMAIKRGDSEALLIDKQEIKTQITVN 348 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G TIVL G+ + Q +P+L+ IP LGALF+ + E+ I TP L+ Sbjct: 349 DGETIVLGGIFQQKNSQGVNKVPILADIPWLGALFKQDTQQQSRRELVIFITPRLISA 406 >gi|311693369|gb|ADP96242.1| type 4 fimbrial biogenesis protein PilQ [marine bacterium HP15] Length = 688 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 31/255 (12%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------------ 235 QV+++ I + ++ + +G + F Sbjct: 432 RQVSIEARIVRAQTNVAENLGVRWGGAAYDVSGDNVFTVGGSQGSLQEARDAAAGNSNTI 491 Query: 236 ----------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 G F++ D F + L ALE +++P + Q+A Sbjct: 492 SFPGALAVDLGVSGEGTSSFAIGWGSDNFLVDLELSALESDGQAEVVSQPRVVTADRQTA 551 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 S SG + Y+ +SS GAT++ + + L TP + +I + + V++ G Sbjct: 552 SIKSGEEIPYQEATSS-GATNIEFKEAVLSLEVTPQITPDDKIIMDLV--VNQDSRGEVT 608 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +PS T V + +G T+VL G+ + ++ P L IP LG +F+ + Sbjct: 609 AGIPSINTNSVTTQVLVGNGETVVLGGIFQSEVATQTTKTPFLGDIPYLGRIFKRTEHLD 668 Query: 406 EETEIFIAATPFLVK 420 E +E+ I TP ++K Sbjct: 669 ERSELLIFITPKIIK 683 >gi|77361610|ref|YP_341185.1| mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Pseudoalteromonas haloplanktis TAC125] gi|76876521|emb|CAI87743.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Pseudoalteromonas haloplanktis TAC125] Length = 552 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 103/249 (41%), Gaps = 21/249 (8%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVL 251 QV L+ I E+ Q G S G S SFA G G +S + Sbjct: 284 RQVILEAKIIEITLKDEYQQGVNWERISSGLGSSISFATTAGNFGNNLSASLGGVSSLTI 343 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----------VSSS 301 +R F V++ LE ++ L+ P +TA + Q A G + T +++ Sbjct: 344 ERGDFNGVINLLETQGDVQMLSNPRVTATNNQKAVIKVGQDEYFVTNVSSTTVTGTSTTT 403 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSYR 352 + +T G+ L TP + G + L + V+E + + Sbjct: 404 SPEIDLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETQEQLKVITLDDQRFELPLAQSN 463 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +R++DT + SG +V+ GL++ Q + P+L IPI G LF+N R +E+ E+ I Sbjct: 464 IRESDTVIRAQSGEIVVIGGLMQTSTQDEETKTPILGDIPIFGNLFKNIRKRQEKKELII 523 Query: 413 AATPFLVKP 421 P +V P Sbjct: 524 LIRPTVVMP 532 >gi|261856527|ref|YP_003263810.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2] gi|261836996|gb|ACX96763.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2] Length = 729 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 91/261 (34%), Gaps = 35/261 (13%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------- 242 QV ++ I + +Q+G + + + + +F V+ G Sbjct: 459 KQVLIETRIVIATDNFARQLGVRWGVQAGFNRGNSTFGLGSTAPLVASGTSLPTAGASTG 518 Query: 243 --------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + + + L AL+ ++ P + +G Sbjct: 519 TVGTAPTDWMVNTPISGTPAGSLGLAILGSNVLLDLELSALQSEGTGEIVSSPKVITTNG 578 Query: 283 QSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 +A + G + Y ++ G + +V+ + TP + I + I + EP Sbjct: 579 HTALISQGTEIPYIATQTAGGVASNTVSFKKAVLSTEVTPQITPNNNIIMDIDVKKDEPD 638 Query: 341 IGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P R+ T VE+ +G T+VL G+ + + +P +P +G LF Sbjct: 639 YTNLLPGTTNPPINTREVKTKVEVKNGETVVLGGIYQFENNNSINKVPFFGDLPGIGNLF 698 Query: 399 RNSRFNREETEIFIAATPFLV 419 +N + E+ I TP ++ Sbjct: 699 KNKEVKNQRLELLIFVTPKII 719 >gi|152986567|ref|YP_001350166.1| putative type II secretion system protein [Pseudomonas aeruginosa PA7] gi|150961725|gb|ABR83750.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] Length = 803 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 104/268 (38%), Gaps = 26/268 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V++LL+ QV ++ I EV D + G Q + Sbjct: 471 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVIGGVNFGQSALNTAA 529 Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 G + G+ + + AL+ L+ P L + +SA Sbjct: 530 RNSIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 589 Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 S G + + S+ ++ D G+ L+ P + G + L + EVS Sbjct: 590 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 649 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + R DT++ L G +VL GLL+D++Q +G+P LS +P +G+L Sbjct: 650 SVDERASTVAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 709 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425 FR + +R +T + + P++V+ A Sbjct: 710 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 737 >gi|237756260|ref|ZP_04584819.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense SS-5] gi|237691579|gb|EEP60628.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense SS-5] Length = 602 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 95/248 (38%), Gaps = 20/248 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------- 238 Q+ ++ I +V LK +G Q ++ + + GG Sbjct: 353 RPYQIAIEARIVQVSTSNLKDLGIQWGGRATNIDNNNTKIITGGGSTSIISGGRYAVDFP 412 Query: 239 ---VSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + G F++ V + L AL+ + L++P + I G++A + G + Sbjct: 413 SSSATFPGGFAIGFVFGGLQNFLDVRLSALQSIGKSKILSKPQIVTIDGETAEISQGYEV 472 Query: 294 LYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 Y T ++ G T SV+ + L+ TP + G I + + P P Sbjct: 473 PYTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLILGNPPI 532 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + + + V G + + G+L+ G+P L IPILG LF+ + E+ Sbjct: 533 QTKTVTSKVVAKDGSVVAIGGILEKTEDVKDSGVPGLMNIPILGYLFKEKYQQEKTNELL 592 Query: 412 IAATPFLV 419 I +P +V Sbjct: 593 IFLSPKIV 600 >gi|294142972|ref|YP_003558950.1| general secretion pathway protein D [Shewanella violacea DSS12] gi|293329441|dbj|BAJ04172.1| general secretion pathway protein D [Shewanella violacea DSS12] Length = 712 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 109/305 (35%), Gaps = 47/305 (15%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + +ET + V+N L+I QV ++ I EV G Q + Sbjct: 314 IMAHAETNALVITAQPDQMRTIDSVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGIQWAT 372 Query: 220 TGSSSGPSKSFAADFG--------------------------------------GKFVSE 241 + G + Sbjct: 373 ASGGGTQFNNLGPTIGEIGAGVWLAKDQKASQTCTGSGDNKTCTDNPDTPGDITLLAQAL 432 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + F ++ A+ T LA P++T + Q ASF G + T S S Sbjct: 433 GKVNGMAWGVATGDFAALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSQS 492 Query: 302 ------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 T+V + GV L P + + L I+ EVS ++ R+ Sbjct: 493 SSNGNENPFTTVERKEVGVKLKVIPQINEGSSVKLTIEQEVSGINGKTAVD--VTFATRR 550 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 TTV SG +VL GL+ +++Q+ + +P L +P++G LFR+S ++++ + I Sbjct: 551 LTTTVMADSGQIVVLGGLINEEVQESVQKVPFLGDLPLIGHLFRSSSSSKKKKNLMIFIK 610 Query: 416 PFLVK 420 P +++ Sbjct: 611 PTIIR 615 >gi|258406114|ref|YP_003198856.1| type II and III secretion system protein [Desulfohalobium retbaense DSM 5692] gi|257798341|gb|ACV69278.1| type II and III secretion system protein [Desulfohalobium retbaense DSM 5692] Length = 499 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 102/256 (39%), Gaps = 21/256 (8%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------------S 224 V+N L Q+ ++ +I E ++ +++G + + Sbjct: 242 VLNHLE-RPRKQIHIEASIVEATQNTARELGMRWRGRYVTSGRGIEDVGIIGDAQEPEDW 300 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G + + G + +V G + + L ALE+ + LA P+LT + QS Sbjct: 301 GSAITTLPGSGTDTLGGLKLGTVVGEIAGNVLFSQLQALEKEGQVNILASPSLTTMDNQS 360 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 AS G+ + + G V D + L P ++ + + I E N Sbjct: 361 ASTQ-HGERVPYETTDEDGDRVVKFEDVAMGLKVHPRIIEGDLMAMDIVVTKDEVDFSQN 419 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P R ++ +T + + +G TIV++GL K + + G+P L K+P L LF+ + Sbjct: 420 VQGNPLIRTKETETNLLVRNGETIVISGLSKQTVSGTEHGVPGLRKVPGLSWLFKGIDKS 479 Query: 405 REETEIFIAATPFLVK 420 + E + TP ++ Sbjct: 480 EDMEEFMVFITPTILD 495 >gi|110833294|ref|YP_692153.1| general (type II) secretion pathway protein D [Alcanivorax borkumensis SK2] gi|110646405|emb|CAL15881.1| general (type II) secretion pathway protein D [Alcanivorax borkumensis SK2] Length = 710 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 65/341 (19%), Positives = 122/341 (35%), Gaps = 29/341 (8%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + L D + L+ F+ +++ D + + S +A E Sbjct: 278 ETNNSGAKVIRLSHGDAKSMAELLKNFVDGASVN-RAGGDGKTTSVALNNNEVSIQADES 336 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + ++ S V++ L++ Q+ ++ I E+ + K +GFQ+ + Sbjct: 337 LNALVVRAKPAMMKQIQS--VISKLDVR-RAQILIEAAIVEISGEQGKNLGFQYVGGSNE 393 Query: 224 SGPSKSFAADFGGKFVSE------------------GGDFSVKGVLDRFSFETVLHALER 265 G G S + ++ AL Sbjct: 394 DGVGAVNFGGNGLSVNSVVQALASDDPSGLSLGDGITAGLGETDSDGDLKWGALIQALST 453 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLHF 318 ++ + L+ P++ + + AS G + T S+ T++ D G+ L Sbjct: 454 SSDVNLLSTPSILTLDNEEASIIVGENVPFVTGQSTNTGSGVSNPFTTIQREDVGLTLKV 513 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TP V I L ++ E S RK +TV TI L GL+KDDI Sbjct: 514 TPHVAGLSTIRLELEQESSAVKDSAGDAVDIVTTTRKLQSTVLADDAETIALGGLIKDDI 573 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P L IP+LG LFR++ +R ++ + + P ++ Sbjct: 574 RVTVRKVPFLGDIPVLGFLFRSTSKDRVKSNLMVFLKPTIL 614 >gi|206577210|ref|YP_002240367.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae 342] gi|206566268|gb|ACI08044.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae 342] Length = 648 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 67/368 (18%), Positives = 137/368 (37%), Gaps = 45/368 (12%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149 ANV+ +++ + + I + L R+ N +V +D V VL G Sbjct: 217 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 276 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196 + ++Q+ +++ + + +++ ++V+ L+I QV Sbjct: 277 ISSSLQNDKQSAKPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 335 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242 ++ IAEV+ +G Q + + + Sbjct: 336 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTVIAGANQYNKDGTVSSSLAS 395 Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + + ++ +L AL +T LA P++ + A+F G + T S Sbjct: 396 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 455 Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352 +T +V G+ L P + + L I+ EVS ++ ++ Sbjct: 456 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 515 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + + + Sbjct: 516 TRTVNNAVLVGSGETVVVGGLLDKSVTDTADKVPLLGDIPVIGALFRSESKKVSKRNLML 575 Query: 413 AATPFLVK 420 P +++ Sbjct: 576 FIRPTIIR 583 >gi|218710790|ref|YP_002418411.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32] gi|218323809|emb|CAV20166.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32] Length = 572 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 65/312 (20%), Positives = 120/312 (38%), Gaps = 31/312 (9%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + ++D + G V + + T + + + ++ L+I + QV Sbjct: 261 KATDIADMIGGEGAVSMLSERGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVK-QV 319 Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------------------------TGSSSGPSKSF 230 ++ I V L ++G + + G +S Sbjct: 320 QIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFL 379 Query: 231 AADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + G S F V + + L AL++ + ++ P L + + A Sbjct: 380 NVNLGATSPSASSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQ 439 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y SS+GATSV + L TP + R+ L + P V+ G+ Sbjct: 440 GTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVVKTGTGE 498 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + ++ T V + +G T+VL G+ + + + +PLL +P+LGALFR S N + Sbjct: 499 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLPVLGALFRRSYENVGK 558 Query: 408 TEIFIAATPFLV 419 +E+ I TP +V Sbjct: 559 SELLIFVTPKVV 570 >gi|251789515|ref|YP_003004236.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya zeae Ech1591] gi|247538136|gb|ACT06757.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya zeae Ech1591] Length = 691 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 69/451 (15%), Positives = 140/451 (31%), Gaps = 40/451 (8%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99 G + I++ N + D + V++ A V + + + + G A + Sbjct: 158 TGPTEYINLIRNFSQQRETKEDRRKVMIFPLRYASVSDRTIQYRDQRLVI----PGVATI 213 Query: 100 I--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN--IRVEMVSDTVVL-------H 148 + L+ + + MT + ++ +L Sbjct: 214 LNELMDGNRNTPAGAAAAGSGIGSDGGMTTADGAGGGQDASKAIEMNARSMLAKLASRNS 273 Query: 149 GMVRTIQDSQRAV--ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAE 204 G + + + ++S + + + + L++ Q V + I + Sbjct: 274 GGASSASRKKDQLNGKVSADVRNNALLVRDDEKRRDEYQQLIDKIDVPQNLVNIDAIILD 333 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V R L ++ + + + FVS D F + ALE Sbjct: 334 VDRTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS-----------DFKRFSADIQALE 382 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +A P++ + Q A +V G L TP V+ Sbjct: 383 GEGTASIVANPSVLTLENQPAVIDFSRTAFITAT--GERVANVQPVTAGTSLQVTPRVVG 440 Query: 325 -PGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLK 382 G +++ ++ + + N S R T + +VL G ++ Sbjct: 441 HGGSSSIQLVIDIEDGQVETNTEGTASGVKRGTVSTQALIGENRALVLGGFHVEESGDRD 500 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + +PLL IP +G LF + + E TP L+ D+ +DA Sbjct: 501 KRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSADNRRQLNDAMG 560 Query: 443 FFFNRVNK--IYGPKEASEVEGQNYKGAIGF 471 R +K ++G E + + + + GF Sbjct: 561 RVAQRNSKTDLFGTVENALRDLASGQTPAGF 591 >gi|290473150|ref|YP_003466011.1| putative transporter [Xenorhabdus bovienii SS-2004] gi|289172444|emb|CBJ79211.1| putative transport protein, possibly in biosynthesis of type IV pilin (fragment) [Xenorhabdus bovienii SS-2004] Length = 361 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 87/229 (37%), Gaps = 6/229 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--L 251 QV + I R+ L ++G + S + V + Sbjct: 132 QQVQITAHIVTSSREALHELGIHWGMAADPLNRSIGLNRLNLHQSAGNQSHRLVLNTARI 191 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 E L ALE+ + +A P LTA Q AS G Y T++ + Sbjct: 192 HASLLEMELSALEQENQLDIIASPRLTASHQQPASIKQGSDIPYLV--QDKDKTTIQFKE 249 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + TP +L G+I L ++ + P I + + ++ T V + +G T++ Sbjct: 250 AVLGMEVTPHILRKGKIRLALKISQNAPGLPISQGGNENLAIDKQEIVTQVTVRNGETLI 309 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L G+ + + +P LS +P+LGALF E+ I TP L Sbjct: 310 LGGIFQQKKGASLQKVPYLSDLPLLGALFNQKGEQHSRRELVIFITPQL 358 >gi|190574660|ref|YP_001972505.1| putative general secretion pathway protein D [Stenotrophomonas maltophilia K279a] gi|190012582|emb|CAQ46210.1| putative general secretion pathway protein D [Stenotrophomonas maltophilia K279a] Length = 792 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 83/462 (17%), Positives = 161/462 (34%), Gaps = 39/462 (8%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 LQ+ ++ + + P K A + V + L + ++ ++ Sbjct: 197 KLQQGIAVDVAAMVAPLLDAQGAEPTQKVVVMADPRSNSVLLRSSSPGRTRLARQLVEKL 256 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTM--YLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + + + + L G GQ++ +G + + L Sbjct: 257 DRAQDES--GNLHVVYLRNAQANQLAGVLRGVVAGQSDAPAMG-SNEGITPLPGDASHST 313 Query: 121 AHLEMTLRRFIADSNI----RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 ++ N R++ + G Q+ T + Sbjct: 314 PAQPSQPQQAKPGGNALESQRLDPSRRDPIDAGSTGFSQNGISVQADVATNTLLISAPEP 373 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 + ++V++ L+ QV ++ I EV + ++G Q + + F GG Sbjct: 374 VYRNLRRVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTTGG 432 Query: 237 KFVSEG-------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 ++ G ++ GV + + + +AL+ L+ P L Sbjct: 433 SGLNTTARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSKGGANILSTPNL 492 Query: 278 TAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + ++AS G + + S+ ++ D G+ L P + G + Sbjct: 493 MTLDNEAASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVK 552 Query: 330 LRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I EVS R DT+V L G +VL GLL+D + ++ +P L Sbjct: 553 LDIYQEVSSIDAQSANSTAGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGL 612 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429 KIP+LGALFR+ R +T + + P +V+ P A + L+R Sbjct: 613 GKIPVLGALFRSDTRKRAKTNLMVFLRPHVVREPAAGQRLTR 654 >gi|238783115|ref|ZP_04627141.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970] gi|238715911|gb|EEQ07897.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970] Length = 405 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 72/380 (18%), Positives = 133/380 (35%), Gaps = 31/380 (8%) Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 V V AD + + + G ++ L+ +Q L + + + E + Sbjct: 30 VSVVLQALADYQQLN---LVVAAGVSGNISLRLVDVPWEQALTIILRMGHLKVEREGAVM 86 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRT----IQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 + +I + A +++++ + + K Sbjct: 87 MVFTEQDIEERQQRTKQKTEPDSLSNLTLALQHADAEQVADSLDESELLSPLGSVMVDKR 146 Query: 185 MNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 N L I QV L I + R+ L+++G + + S Sbjct: 147 TNTLLIRDTPASLAVLKGWLAEMDLPLQQVQLAAHIVTMSRENLQELGVRWGMGESQHAT 206 Query: 227 S---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S F + F+V + R + ALE+ + +A P L A Q Sbjct: 207 SLRVNDFNVNLPLANSVVNAGFNVARIGGRLLELEL-SALEQENQVDIIASPRLVASHLQ 265 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +AS G Y GA S+ + + + TP +L G+I L ++ + P + + Sbjct: 266 TASIKQGSDIPYAVARGDKGAVSIEFKEAVLGMEVTPKILRNGKITLNLKISQNMPGMTI 325 Query: 344 --NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + ++ T + + G TIVL G+ + Q +P+L+ IP LGALF+ Sbjct: 326 KRGDTEALLIDKQEIKTQITVNDGETIVLGGIFQQKNNQAVNKVPILADIPWLGALFKQD 385 Query: 402 RFNREETEIFIAATPFLVKP 421 + E+ I TP L+ Sbjct: 386 TKQQSRRELVIFITPRLISA 405 >gi|217971366|ref|YP_002356117.1| general secretion pathway protein D [Shewanella baltica OS223] gi|217496501|gb|ACK44694.1| general secretion pathway protein D [Shewanella baltica OS223] Length = 706 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 47/305 (15%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + +ET + + V+N L+I QV ++ I EV G Q + Sbjct: 315 IMAHAETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAA 373 Query: 220 TGSSSGPSKSFAADFG---------------------------------------GKFVS 240 + G + Sbjct: 374 KAGGGTQFNNLGPTIGEIGAGVWQAQGEKGSSITTLDPEGKPVVTTNPDKRGDVTLLAQA 433 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----Y 295 G + + F ++ A+ T LA P++T + Q ASF G + Sbjct: 434 LGKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGST 493 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + S+S +V + GV L P + + L I+ EVS S+ R+ Sbjct: 494 ASSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRR 551 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 TTV SG +VL GL+ +++Q+ + +P L IPI+G LF++S + + + I Sbjct: 552 LTTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIK 611 Query: 416 PFLVK 420 P +++ Sbjct: 612 PTIIR 616 >gi|121610459|ref|YP_998266.1| general secretion pathway protein D [Verminephrobacter eiseniae EF01-2] gi|121555099|gb|ABM59248.1| general secretion pathway protein D [Verminephrobacter eiseniae EF01-2] Length = 740 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 113/314 (35%), Gaps = 37/314 (11%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E+ + L Q G Q G++SG S Sbjct: 405 GRRAQVLVESLIVEISANKLAQFGVQWQSLLGKKGASLLGAIGTNSGQSGGNITSLTAAL 464 Query: 239 VSEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S + ++ + + L+ + L+ P L + + Sbjct: 465 ASGSTTSIATAANSLGQGMNLLLAPRINGQYYLGALANFLQNSGDANVLSTPNLMTLDNE 524 Query: 284 SASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 A G + T S + T+V D G++L P + G + L + E Sbjct: 525 EAKIVIGNNVPFVTGSYANSSSNSTVNPFTTVQRQDVGLMLRVRPQINENGTVKLSVYQE 584 Query: 336 VSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VS+ + + P+ R ++ V + G IV+ GLL+D ++ +P+L +P+L Sbjct: 585 VSKIDASTLTSPNGPTTSKRSIESNVLVEDGSIIVIGGLLEDSYSLNQDKVPVLGDMPVL 644 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 G LFR+ + R +T + I P +++ A D+ D Y + + + Sbjct: 645 GNLFRSEKRTRNKTNLMIFLRPTVLRSSASSDI-LTADRYDAIRALQLGIQPVAHPMLDA 703 Query: 455 KEASEVEGQNYKGA 468 +A+ V G Sbjct: 704 VDAAPVLPPPRPGT 717 >gi|153003562|ref|YP_001377887.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5] gi|152027135|gb|ABS24903.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5] Length = 893 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 60/307 (19%), Positives = 106/307 (34%), Gaps = 37/307 (12%) Query: 147 LHGMVRTIQ-DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 + G V+ + + T + Q A ++ ++ L+ QV ++ I E Sbjct: 579 VSGRVKDVLSERGSVSTDERTNVLIVKDVQEALVRAEGLVRNLDTEIP-QVLIESRIVEA 637 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA--------------------------------D 233 + K +G Q S + + + Sbjct: 638 SSNFNKALGVQWGGNASFTQATGNPTGVAFPNNVAAAGGAGPGNSFGTAANPNYAVSLPA 697 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G F+ L ALE ++T++ P + I + A+ G Sbjct: 698 PVGDGQGGALGLVFGSAGGAFNLNLRLSALENNGVVKTISAPKIATIDNREATI--GQGI 755 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYR 352 S + T + + L TP V + G I L+I+ ++P + PS Sbjct: 756 SIPFSQVSASGVNTTFIEAKLELKVTPHVSADGSILLKIKATNNQPNPQLTGANGQPSIS 815 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+A+T V + G T V+ G+ +P L K+P+LG FRN + TE+ I Sbjct: 816 KREAETEVLVKDGETTVIGGIYTRQTANRTSEVPFLGKLPLLGYFFRNMSEQDDHTELLI 875 Query: 413 AATPFLV 419 TP ++ Sbjct: 876 FITPRIL 882 >gi|107100151|ref|ZP_01364069.1| hypothetical protein PaerPA_01001172 [Pseudomonas aeruginosa PACS2] Length = 786 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V++LL+ QV ++ I EV D + G Q + G Sbjct: 454 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 512 Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 G + G+ + + AL+ L+ P L + +SA Sbjct: 513 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 572 Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 S G + + S+ ++ D G+ L+ P + G + L + EVS Sbjct: 573 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 632 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + R DT++ L G +VL GLL+D++Q +G+P LS +P +G+L Sbjct: 633 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 692 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425 FR + +R +T + + P++V+ A Sbjct: 693 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 720 >gi|26987782|ref|NP_743207.1| general secretion pathway protein D [Pseudomonas putida KT2440] gi|24982477|gb|AAN66671.1|AE016295_4 type II secretion pathway protein XcpQ [Pseudomonas putida KT2440] Length = 584 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 65/344 (18%), Positives = 121/344 (35%), Gaps = 34/344 (9%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G + L + + LR + + VE + G R + + + Sbjct: 197 GSGSTQVIYLRHANAGEVVKVLRGLSQEGAVPVEGAGEA---EGKDRPVVPAAGGSGIRL 253 Query: 166 TFLSQSGRNQYANSSSK-----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S+ ++ L+I QV ++ IAEV +++G Q Sbjct: 254 EYEEGTNAVVMVGPDSELAAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFA 312 Query: 221 GSSSGPSKSFAADFGGK--------------------FVSEGGDFSVKGVLDRFSFETVL 260 G G + G + F+F ++ Sbjct: 313 DEKFGAGIVNFGSNGVNIASIAGAAASGDNEALGDLLSTTTGATAGIGHFGGGFNFAMLV 372 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVL 316 +AL+ + L+ PTL + AS G + + T S + ++ + GV L Sbjct: 373 NALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKL 432 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + + L I EVS +A D+ R+ T V + G ++L GL+ D Sbjct: 433 RIKPQINIDNSVRLDIVQEVSSIADTSSASDV-ITNKREIKTKVMVEDNGLVILGGLISD 491 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++ + +PLL IP LG LFR+ + + + P +++ Sbjct: 492 ELSTSDQRVPLLGDIPYLGRLFRSDATRNTKQNLMVFIRPRILR 535 >gi|330954627|gb|EGH54887.1| general secretion pathway protein D [Pseudomonas syringae Cit 7] Length = 356 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 110/305 (36%), Gaps = 20/305 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G +++ S R + + + L+ QV ++ I EV+ Sbjct: 39 GNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVQLT 97 Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G Q S T + + G + + + + L Sbjct: 98 GELDMGVQWYLGRLAGNSGTTGNVTNTSGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 157 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGV 314 ALE + L+ P+L ++ Q A G S+ T +SV GV Sbjct: 158 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTDTTLSSVEYVQTGV 217 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLA 371 +L P + G + + IQ +VS N D P R T V SG T++L Sbjct: 218 ILDVVPRINPGGLVYMDIQQQVSSADTNANNNDANGNPRISTRSVATQVAAQSGETVLLG 277 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K D + +P L +IP L LF N+ +++ TE+ + TP ++ + + Sbjct: 278 GLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI--TSSSQARQVT 335 Query: 432 DHYSV 436 D Y Sbjct: 336 DDYRQ 340 >gi|330938340|gb|EGH41971.1| type II and III secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 247 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 10/241 (4%) Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + +F++ +++A+E + TLA P+L A++G Sbjct: 4 GINVTPGAVGGITPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNG 63 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-- 340 QSASF +GG+ + S+ ++GV L TPTV+ RI L++ EVSE Sbjct: 64 QSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFS 123 Query: 341 --IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 I + +P+ +R+ DT++ L G + V++GL+ + P L IPILGA F Sbjct: 124 AGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFF 183 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFF--NRVNKIY 452 R+S+ R+E E+ + TP LV+P+A S P + + +F ++ Sbjct: 184 RSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEGLRTYDPSFPRLYFLENGDFDRRD 243 Query: 453 G 453 G Sbjct: 244 G 244 >gi|294139057|ref|YP_003555035.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12] gi|293325526|dbj|BAJ00257.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12] Length = 560 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 92/250 (36%), Gaps = 24/250 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAADFGGKFVSEGGDFSVK 248 QV ++ I EV Q G G S + ++ Sbjct: 280 RQVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTNIEFGTSSGGNSLSDQITSVIGGVTS 339 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------- 300 F +++ L+ + L+ P +TA++ Q A G + T S Sbjct: 340 LKFSGTDFAAMINLLDTQGDVDVLSSPRVTALNNQKAVIKVGTDEYFVTDVSSTTVAGNT 399 Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------ 352 +T +T G+ L TP + G + L I V + Sbjct: 400 PITTPEVELTPFFSGIALDVTPQIDGEGNVLLHIHPSVISIKEQTKTIKISDSTLELPLA 459 Query: 353 ---VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++DT + SG +V+ GL+K + +L +PLL IP+LG LF N + ++TE Sbjct: 460 QSDIRESDTVIMARSGDVVVIGGLMKSENIELLSKVPLLGDIPLLGELFTNRSKSLKKTE 519 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 520 LVILLKPTVV 529 >gi|238897480|ref|YP_002923157.1| putative protein exporter, transport across outer membrane (General Secretory Pathway) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465235|gb|ACQ67009.1| putative protein exporter, transport across outer membrane (General Secretory Pathway) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 687 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 41/299 (13%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +T +Q S + ++ L+I QV ++ I EV G Q Sbjct: 330 IAASKKTNALVVTASQDVMQSIRSIIEQLDIR-RAQVHVEALIVEVAEISDINFGVQWQA 388 Query: 220 TGSSSGPSKSFAADFGGKFVS---------------------------------EGGDFS 246 S + G ++ G Sbjct: 389 NNSLIQFNNGHQIPLGALTLARRHAESKTGNTLNQNETFLPSQVSSDISLLSKLLSGFSG 448 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSS 301 K + + ++ ++ A++ +++ L+ P++T + Q ASF G T +++ Sbjct: 449 AKVGIIKGDWQALVQAVKNDSSVNVLSTPSITTLDNQEASFMVGEDVPVLTGSAANANNT 508 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 +V GV+L TP + + L I+ EVS+ + RK TTV Sbjct: 509 NPFNTVERRKIGVMLKVTPQINEGNTVQLLIEQEVSKIQGETKLD--IKFAERKLKTTVL 566 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G IVL GLL ++ + +P+L IPILG LF+++ + + + I P +++ Sbjct: 567 ADDGQLIVLGGLLDEESGESVSKVPVLGDIPILGHLFKSTVNKKTKRNLMIFIRPTILR 625 >gi|330989446|gb|EGH87549.1| general secretion pathway protein D [Pseudomonas syringae pv. lachrymans str. M301315] Length = 778 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + T + + ++V++ L+ QV ++ I EV D Q G Q Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G + G G ++ G+ + + + Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGFNVGVVRGAVTIPGIGEVLDLKVLAR 544 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + ++AS G + T +S+ +V + G Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L+D Q E +P LS+IP+LG LFRN + +T + + P++++ Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 711 >gi|308272047|emb|CBX28655.1| hypothetical protein N47_G39790 [uncultured Desulfobacterium sp.] Length = 667 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 98/240 (40%), Gaps = 12/240 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS--VKGV 250 QV ++ IA++ +G +I + G S + S G Sbjct: 379 PRQVMIEGMIAQIDLKDDLSLGLAWAINTKNFGGSPANITFNANGLTSATSSTGLRFIGT 438 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGAT 305 + V+ ALE + + LA P + + A+ G Q T S+ Sbjct: 439 DSGDAVRAVVTALESQSRGKLLAAPHILVSDNREATIQVGQQVPIVTSSTLATSTQAAQQ 498 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTV 360 ++ D G++L P V G + L I+ EVS V + + + T + Sbjct: 499 TIQYKDIGIILKVKPQVNDSGLVSLEIKQEVSSFSSLSSADTVTSNEDILINKTEVSTNL 558 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G TI++ GL+++D + + GIP L KIPILG LF + + TE+ I TP +VK Sbjct: 559 VVQDGHTIIIGGLIREDKSKSRTGIPWLVKIPILGFLFGGTNDTNKRTELIILLTPHVVK 618 >gi|288937072|ref|YP_003441131.1| general secretion pathway protein D [Klebsiella variicola At-22] gi|290512493|ref|ZP_06551859.1| general secretion pathway protein D [Klebsiella sp. 1_1_55] gi|288891781|gb|ADC60099.1| general secretion pathway protein D [Klebsiella variicola At-22] gi|289774834|gb|EFD82836.1| general secretion pathway protein D [Klebsiella sp. 1_1_55] Length = 651 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 67/368 (18%), Positives = 137/368 (37%), Gaps = 45/368 (12%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149 ANV+ +++ + + I + L R+ N +V +D V VL G Sbjct: 220 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 279 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196 + ++Q+ +++ + + +++ ++V+ L+I QV Sbjct: 280 ISSSLQNDKQSAKPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 338 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242 ++ IAEV+ +G Q + + + Sbjct: 339 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTVIAGANQYNKDGTVSSSLAS 398 Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + + ++ +L AL +T LA P++ + A+F G + T S Sbjct: 399 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 458 Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352 +T +V G+ L P + + L I+ EVS ++ ++ Sbjct: 459 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 518 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + + + Sbjct: 519 TRTVNNAVLVGSGETVVVGGLLDKSVTDTADKVPLLGDIPVIGALFRSESKKVSKRNLML 578 Query: 413 AATPFLVK 420 P +++ Sbjct: 579 FIRPTIIR 586 >gi|238022253|ref|ZP_04602679.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147] gi|237866867|gb|EEP67909.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147] Length = 699 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 96/257 (37%), Gaps = 24/257 (9%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSG----------- 225 ++ L++ QV ++ I E + +++G + ++ G Sbjct: 435 LIEELDVPAR-QVMVEARIVEASDTLSRELGVKFGGVRAGSTSWANNWGLATERNSRGVR 493 Query: 226 ---PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 F + S G +V + L A E +T++ P + Sbjct: 494 NGSSGVLFEPNINVPVASAVGSIAVVKSFSSVTLGLELSASEAEGRSKTISTPRVLTQDR 553 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Q A G Q Y S G+T+ + D + L P + +I + + P Sbjct: 554 QEAEIKQGYQVPYT-TRDSDGSTTTSFKDAVMSLKVLPRITPDNKIIMDVTINKDTPDNT 612 Query: 343 -VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 ++ PS R + T + GGT+V+ G+ ++ IQ + +P+L +P+LG LF+ Sbjct: 613 YQSSEGEPSIRTQSVKTQAMIEDGGTLVVGGVYQEVIQNNVKKVPMLGDLPVLGNLFKTR 672 Query: 402 RFNREETEIFIAATPFL 418 N E+ TP + Sbjct: 673 SRNNSRNELLFFITPRI 689 >gi|222109918|ref|YP_002552182.1| type IV pilus secretin pilq [Acidovorax ebreus TPSY] gi|221729362|gb|ACM32182.1| type IV pilus secretin PilQ [Acidovorax ebreus TPSY] Length = 696 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 23/246 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT--------------------GSSSGPSKSFAAD 233 QV ++ I E R + +G + GS P S A Sbjct: 447 RQVMIEARIVEARDTFGRSLGVRLGGGSRTGGSAVGGTYDNVAGPTGGSGMSPFVSLPAS 506 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G S+ L A+E + ++ P L A G ++ Sbjct: 507 LSGVSTVGSFALSIFNSNASRFLSLELSAMEADGQGKIVSSPRLITADQTKALIEQGTEY 566 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 Y + GAT++ + L TP + G I L + +V++ G + + Sbjct: 567 PYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGNIILDL--DVNKDSRGESTTQGVAIDT 623 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + T V + +GGT+V+ G+ + + + IP+L +P++G LF+N + E+ + Sbjct: 624 KHIKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGNLFKNRTKESTKREMLVF 683 Query: 414 ATPFLV 419 TP ++ Sbjct: 684 ITPKVI 689 >gi|92112745|ref|YP_572673.1| type II and III secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91795835|gb|ABE57974.1| type II and III secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 668 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 67/361 (18%), Positives = 134/361 (37%), Gaps = 47/361 (13%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 +IL H N D+++ + L R+ + + R + ++ V Sbjct: 308 LILQSHGLASRRNGDVIVVAPVDELAQMERQTLEN---RAQSEQLAPLVTDYV--QVRYA 362 Query: 159 RAVELSETFLSQSGRN---QYANSSSKKVMNLLNIAGED------------------QVT 197 +A +L+ G + + + N L + QV Sbjct: 363 KATDLAAMLRGSEGFGLLSERGRVTVDERTNTLLVRDTREQLASIRGMLERLDVPVRQVQ 422 Query: 198 LKVTIAEVRRDILKQIGFQHSITG-------------------SSSGPSKSFAADFGGKF 238 ++ I R +++G I+ S + + + G Sbjct: 423 IEARIVIARDTASRELGVNWGISQRQGVTFDDDGVGSVVDRNPSGANRGSAGLSVDLGDS 482 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G FS + + L ALE +T+++P + + ++A G + Y+ Sbjct: 483 DGSGSTFSFGYLSGDVLLDLELRALESEGKSQTISQPKVITANQKTAVIKQGQEIPYQES 542 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 +SS GAT+V + + L TP + G I + + ++ V + P+ +T Sbjct: 543 TSS-GATNVEFKEAVLSLEATPQITPDGSIVMDLLIN-NDTVADNSYDGAPAIDTNSIET 600 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + G T+VL G+L + + P L +P++G+LFR ++ + E+ E+ I TP + Sbjct: 601 QVLVDDGATVVLGGILTSEQLRNLYKTPFLGDLPLIGSLFRYTQESNEKVELLIFITPTI 660 Query: 419 V 419 + Sbjct: 661 I 661 >gi|298527731|ref|ZP_07015135.1| general secretion pathway protein D [Desulfonatronospira thiodismutans ASO3-1] gi|298511383|gb|EFI35285.1| general secretion pathway protein D [Desulfonatronospira thiodismutans ASO3-1] Length = 703 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 11/237 (4%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++V IAEVR ++G S G S F + G V V Sbjct: 443 PKQVLIEVIIAEVRLSDATKMGVDWQYI-LSFGDRLSGELRFDPAADALPGAGGVFRVES 501 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTG 303 + L+A ++ L+ PTL A + A+ G Q + T + S Sbjct: 502 SRRLKAALYAAVDDAKLQILSTPTLLASDNRPATINIGDQVPFPTSTRQRLDDTDTSEVI 561 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVEL 362 T++ D G++L TP + G + + I EVS V P R A+TT+ + Sbjct: 562 DTTIQYRDTGIILRVTPKINRHGMVRMEIVQEVSSLTARRVEGITAPVINTRHAETTLAV 621 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 TIV+AGL++ + + G+P +IP++ LF S E TE+ + TP ++ Sbjct: 622 DDQETIVIAGLMEQERSRGYSGVPGFRRIPVVKHLFGTSETRFENTELLVFITPHVI 678 >gi|218894139|ref|YP_002443008.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa LESB58] gi|218774367|emb|CAW30184.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa LESB58] Length = 714 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 35/269 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------------- 219 ++++ L+I QV ++ I E K +G + Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWRGYGKDGNIGIKDEDG 496 Query: 220 ----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 T ++G SKS + + + D + L A+E+ Sbjct: 497 MNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 +++P + ++A G + Y+ SSS ++ + + + L TP + RI Sbjct: 557 EIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + ++ P +P + + + + G TIV+ G+ + + + +P L Sbjct: 616 VEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLG 675 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418 +P LG LFR + + E+ + TP + Sbjct: 676 DLPYLGRLFRRDTVSDVKNELLVFLTPRI 704 >gi|30248714|ref|NP_840784.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas europaea ATCC 19718] gi|30180309|emb|CAD84616.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas europaea ATCC 19718] Length = 697 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 68/379 (17%), Positives = 143/379 (37%), Gaps = 23/379 (6%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + NK + + ++ + DV + ++++ G A ++ Sbjct: 299 LGVAQNKSDLELLREWIERL--------DVSKLGAQRIFVYNVQNGNAKDLVAPLRQVLT 350 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + + +S + G + E + Sbjct: 351 GEMQATTASGTTVSPTSTPMSTPQMPAAAPSLSAEPSISGSQTNVGRLVAIEENNSLMFY 410 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 + + K +++L QV ++ +AEV + + G Q + + Sbjct: 411 GTEDEFRVIQEALKQIDVL----PRQVMIEAFLAEVTLNNNLRYGVQWFFDSGE--NTVT 464 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +A G S+ FS + + VL+AL+ T ++ L+ P ++ ++ Q AS Sbjct: 465 LSATDVGSVASQFPGFSYIYA-GKANARIVLNALQSKTEVKILSAPKISVLNNQKASLQV 523 Query: 290 GGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G Q T +S ++ D GV+L P V G + L + EVSE Sbjct: 524 GDQVPIVTQTSQGTVVSGAPVINTIQMRDTGVILEVIPRVNDNGNVILDVTQEVSEVAQT 583 Query: 343 VN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + D P+ + RK + + G T+ L GL++++ G+PL+ +P++G LF+++ Sbjct: 584 TSSGIDSPTIQRRKIHSVIATRDGFTVALGGLIRENGSAGNSGVPLIKDVPVIGNLFKSN 643 Query: 402 RFNREETEIFIAATPFLVK 420 + TE+ + P +++ Sbjct: 644 TSDIRRTELVVLLVPHVMR 662 >gi|254244078|ref|ZP_04937400.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa 2192] gi|126197456|gb|EAZ61519.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa 2192] Length = 714 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 35/269 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------------- 219 ++++ L+I QV ++ I E K +G + Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWRGYGKDGNIGIKDEDG 496 Query: 220 ----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 T ++G SKS + + + D + L A+E+ Sbjct: 497 MNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 +++P + ++A G + Y+ SSS ++ + + + L TP + RI Sbjct: 557 EIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + ++ P +P + + + + G TIV+ G+ + + + +P L Sbjct: 616 VEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLG 675 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418 +P LG LFR + + E+ + TP + Sbjct: 676 DLPYLGRLFRRDTVSDVKNELLVFLTPRI 704 >gi|237809367|ref|YP_002893807.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187] gi|237501628|gb|ACQ94221.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187] Length = 702 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 103/274 (37%), Gaps = 29/274 (10%) Query: 174 NQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + + +++ + QV ++ + V + +G + +T ++ S S + Sbjct: 426 VKDTAEVIDHIKDMIKVLDVAVKQVVIEARMVTVTDGVEDALGIRWGVTDINTNGSTSGS 485 Query: 232 -----------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 A + F V + D + L ALE Sbjct: 486 IEGLDTAATGETPAIDDRLNVNLAAAPSSGTAASIAFQVAKLADGSLLDLELSALENENK 545 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 ++ P +T + + A G + Y +SS GAT+++ + L TP + + Sbjct: 546 AEIISSPRVTTANQKEALIEQGYEIPYNESASS-GATTISFKKAVLSLKVTPQITPDNNV 604 Query: 329 GLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L + + V N G + + T V + +G T+VL G+ I++ I Sbjct: 605 ILDLHVTQDDIYQDVNTGNGGTAKALSTQAITTQVLVKNGETLVLGGIYNRSIKKTVNKI 664 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P+L IP +G LFRN+ + E+ I TP +V Sbjct: 665 PVLGDIPGVGVLFRNTVNTNTKKELLIFVTPKIV 698 >gi|238788960|ref|ZP_04632750.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641] gi|238722987|gb|EEQ14637.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641] Length = 376 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 6/233 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L ++G + + S F + + F+V + Sbjct: 145 QQVQLAAHIVTISRENLHELGVRWGMGEGKPNTSLKMSDFNVNLPLPNSAINAGFNVARI 204 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + ALE+ + +A P L Q+AS G Y GAT++ Sbjct: 205 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSGGKKGATTIEFK 263 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + + ++ T + + G TI Sbjct: 264 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETI 323 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 VL G+ + Q +P+L IP LG LF+ + E+ I TP L+ Sbjct: 324 VLGGIFQQKSSQGVNKVPILGDIPWLGGLFKQDTQQQNRRELVIFITPRLISA 376 >gi|148546330|ref|YP_001266432.1| general secretion pathway protein D [Pseudomonas putida F1] gi|148510388|gb|ABQ77248.1| general secretion pathway protein D [Pseudomonas putida F1] Length = 584 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 64/346 (18%), Positives = 120/346 (34%), Gaps = 34/346 (9%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 G + L + + LR + + E + G R + + + Sbjct: 195 APGNGSTQVIYLRHANAGEVVKVLRGLSQEGAVPAEGAGEA---EGKDRPVMPASGGPGI 251 Query: 164 SETFLSQSGRNQYANSSSK-----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + + S+ ++ L+I QV ++ IAEV +++G Q Sbjct: 252 RLEYEEGTNAVVMVGPDSELAAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWL 310 Query: 219 ITGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVKGVLDRFSFET 258 G G + G + F+F Sbjct: 311 FADEKFGAGIVNFGSNGVNIASIAGAAASGDSEALGDLLSTTTGATAGIGHFGGGFNFAM 370 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGV 314 +++AL+ + L+ PTL + AS G + + T S + ++ + GV Sbjct: 371 LINALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGV 430 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L P + + L I EVS +A D+ R+ T V + G ++L GL+ Sbjct: 431 KLRIKPQINIDNSVRLDIVQEVSSIADTSSASDV-ITNKREIKTKVMVEDNGLVILGGLI 489 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 D++ + +PLL IP LG LFR+ + + + P +++ Sbjct: 490 SDELSTSNQRVPLLGDIPYLGRLFRSDATRNTKQNLMVFIRPRILR 535 >gi|107101302|ref|ZP_01365220.1| hypothetical protein PaerPA_01002336 [Pseudomonas aeruginosa PACS2] Length = 776 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 95/508 (18%), Positives = 169/508 (33%), Gaps = 60/508 (11%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 Q+T + + P+ L + ANA +++ I + + I L++ + Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206 Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D++ V+ A+V+ S GK+ V+ + +L + L Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262 Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166 +L A+S + D L G + + ++ Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLRGERGQDGRGSGKRGLLVRADE 322 Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 L+ + ++ L++ Q+ ++ I E+ +I +G Q ++ Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381 Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 FA G L F ++ AL R + L+ Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441 Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327 P+L + Q A G ++T S SS T+V D GV L TP + Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501 Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ E+S R +TV G IVL GL++DD+ + Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSR 561 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP +G LFR+SR R + + + P +V+ A + Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472 R I + A+ + G I Sbjct: 607 HGRYRSIQLLRGAAGEPARPLFEDAGAI 634 >gi|71735614|ref|YP_274395.1| general secretion pathway protein GspD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556167|gb|AAZ35378.1| general secretion pathway protein GspD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 778 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + T + + ++V++ L+ QV ++ I EV D Q G Q Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G + G G ++ G+ + + + Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + ++AS G + T +S+ +V + G Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L+D Q E +P LS+IP+LG LFRN + +T + + P++++ Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIR 711 >gi|320324664|gb|EFW80738.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. B076] Length = 778 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + T + + ++V++ L+ QV ++ I EV D Q G Q Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G + G G ++ G+ + + + Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + ++AS G + T +S+ +V + G Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L+D Q E +P LS+IP+LG LFRN + +T + + P++++ Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIR 711 >gi|320328774|gb|EFW84773.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 778 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + T + + ++V++ L+ QV ++ I EV D Q G Q Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G + G G ++ G+ + + + Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + ++AS G + T +S+ +V + G Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L+D Q E +P LS+IP+LG LFRN + +T + + P++++ Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIR 711 >gi|254447504|ref|ZP_05060970.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium HTCC5015] gi|198262847|gb|EDY87126.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium HTCC5015] Length = 721 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 105/296 (35%), Gaps = 32/296 (10%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + A + T + ++ L+I + QV ++ I D KQ+G Sbjct: 422 SERGTATVDARTNTLMVTDTAVVMEQIRSMLQRLDIPVK-QVLIESRIVIASDDFDKQLG 480 Query: 215 FQHSIT---------GSSSGPSKSFA------------------ADFGGKFVSEGGDFSV 247 + + G+ G S +F +F S G F+ Sbjct: 481 SRFGVNRIDPLPVGEGAVFGGSDTFNLQGRQSGGDLNINSRPMNFNFPANAGSSTGQFAF 540 Query: 248 KGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + E L AL+ ++ P + + + A G + Y +SS T Sbjct: 541 ALPTSSGNLLELELSALQAEGKGEIISTPRVITANQKEAFIEQGVEIPYLEAASSGAVT- 599 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELPS 364 V + L TP + RI L + + G +PS R+ +T V + + Sbjct: 600 VAFKKAVLSLTATPQITPDDRIILDLNVKKDNVGEIFGEGEIQVPSIDTREVETQVLVKN 659 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+VL G+ + + IP L IP +G LFR + EI I TP +V+ Sbjct: 660 GETVVLGGIFEHETLDSVTKIPFLGDIPGIGRLFRREIKQNSKREILIFVTPKIVR 715 >gi|197104120|ref|YP_002129497.1| type II secretory pathway protein D [Phenylobacterium zucineum HLK1] gi|196477540|gb|ACG77068.1| type II secretory pathway protein D [Phenylobacterium zucineum HLK1] Length = 686 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 81/470 (17%), Positives = 158/470 (33%), Gaps = 70/470 (14%) Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGK--NVGQANVILIGHDGKQMLNLDILI--- 116 + D + + +VV S ++ L G+ V ++ D + D+ + Sbjct: 218 LKAPGADPAARNGVVSIIVVDSSNSIILRGEPDAVRPLLALVADLDRRAESAGDVRVVQL 277 Query: 117 -ERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + L L++ + + + T + +A + Sbjct: 278 QHANAEQLVPVLQQLVGQTPSPSAGPAATRRGEAPASPEPAATPTAAGQARANIARYPGA 337 Query: 171 SGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 + A+ +++ V+ L++ QV ++ + EV + K++G Q ++ G + Sbjct: 338 NAIVIAADPETQRMLAEVIRQLDVR-RRQVLVEAIVVEVSDEAAKRLGVQFALAGINGSA 396 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------------- 255 A + + Sbjct: 397 IPFTATSYSNSAPNLPAVIGAVAAEKNLPDDDATKALLRDAAVRSLLAANGALIGGGGQI 456 Query: 256 -----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGAT 305 F V++A++ TA L+ P++ + Q A+ G + T S Sbjct: 457 GDDALFGLVINAVKSDTASNLLSTPSVMTLDNQPATILVGQEVPITTGESLGANNENPFR 516 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPS 364 ++ + GV L TP + + G I L ++ EVS ++A R+ +TTV + Sbjct: 517 TIARQNVGVQLEVTPQINAGGTITLFLRQEVSAVAGPISANFTELVLNKREIETTVNVDD 576 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVA 423 G IVL GLL D + E P+L IP LGALFR + + +T + + P +V Sbjct: 577 GEIIVLGGLLSQDERASVEKTPVLGDIPGLGALFRGTNKAKTKTNLMVFIRPKIVGDAAG 636 Query: 424 MRDLSRP----------DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 R ++ P + + +A + + P A G Sbjct: 637 ARAVTGPKYEYIRGQQTAADPRRQSELEALVREYL-RAEPPTSAPLPAGP 685 >gi|158521058|ref|YP_001528928.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3] gi|158509884|gb|ABW66851.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3] Length = 799 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 67/350 (19%), Positives = 130/350 (37%), Gaps = 34/350 (9%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 GK+ +++ L D L L + + + + + + Sbjct: 322 QQGKERIHVYYLKNADAEELAKVL-QMLPEKQGDATAEGKKL-----APVLSKAINITAD 375 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------ 217 + T + K+++ L+I V ++ IAEV + ++G + Sbjct: 376 ASTNSLIIMAERDDYLVLKEIIEKLDIP-RSMVYIECLIAEVNINKDFELGAEWLVGGKG 434 Query: 218 ----------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 S TG ++ + G V + V G ++ + V+ Sbjct: 435 SYDDKDGGYAVGFGGGSDTGYANVARMAMGGLPSGFSVGAMAESIVVGGIEYPNLAAVVR 494 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLH 317 A ++ ++ L+ P + Q A+ T G Y T +T ++ D G+ L Sbjct: 495 AFKKDKDVQILSTPQIMTTDNQEATITVGKNIPYLTKIGTTSSEETYSNYEYKDVGISLK 554 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + I L I+ E+++ + D P+ R T V + TIV+ GL+ D Sbjct: 555 IKPQINENRLIRLDIEQELTKLDQLTTVSLDRPATLKRGITTNVIVHDEHTIVIGGLIDD 614 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + +++ +P L IP LG LF+ + E+T + + TP ++K D Sbjct: 615 SMSRVEYKVPCLGDIPFLGWLFKGLSRSSEKTNLLVFLTPHVIKTAREAD 664 >gi|226946542|ref|YP_002801615.1| secretion system protein [Azotobacter vinelandii DJ] gi|226721469|gb|ACO80640.1| Bacterial secretion system protein [Azotobacter vinelandii DJ] Length = 717 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 52/361 (14%), Positives = 125/361 (34%), Gaps = 36/361 (9%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + +G ++ + ++ ++ IA L R + + + ++ + Sbjct: 351 RKIGNVLLVAPADEIAARERQELEAQQQIAELAPLRRELLQVNYAKATDIA-KLFQSVTS 409 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + QR + + Q + + +++ L++ QV ++ I E D Sbjct: 410 SDEVEEQRGSITVDERTNNIIAYQTQDRLDELRRIVAQLDVPVR-QVMIEARIVEANVDY 468 Query: 210 LKQIGFQHSI-------------------TGSSSGPSKSFAADFGG------------KF 238 K +G + G P +F Sbjct: 469 DKSLGVRWGGSFVNDQWSLYGKDGAQSVDDGQVFLPGTGQVGNFTLEDGMAPVPFVDMGV 528 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + + D + L A+E+ +++P + ++A +G + Y+ Sbjct: 529 ANSTSGLGIGFISDHLILDLQLSAMEKTGNGEVISQPKVLTSDKETAKILTGEEIPYQEA 588 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 SSS ++ + + + L TP + RI + ++ + +P + + Sbjct: 589 SSSGATST-SFKEAALSLEVTPQITPDNRIIMEVKVTKDQADFAKALNGVPPINKNEVNA 647 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + G TIV+ G+ + + + +P L +P +G LFR ++E+ + TP + Sbjct: 648 KVLIGDGETIVIGGVFSNIQAKSVDKVPFLGDLPFIGRLFRRDVVADSKSELLVFLTPRI 707 Query: 419 V 419 + Sbjct: 708 L 708 >gi|330502644|ref|YP_004379513.1| general secretion pathway protein D [Pseudomonas mendocina NK-01] gi|328916930|gb|AEB57761.1| general secretion pathway protein D [Pseudomonas mendocina NK-01] Length = 647 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 82/451 (18%), Positives = 149/451 (33%), Gaps = 49/451 (10%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 P L + +NA +I+ I + + + L++ V V + Sbjct: 154 PLVPQYGHLAAVTSSNALIISDRSANIARIEDLMRQLDQSGAQDFSV----VTLQHAWVM 209 Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL--------- 127 D V + K V+ + +L +A L +L Sbjct: 210 DAAEVLNASIARGQAKGTSATQVVADARTNRLILLGPPQARSKLADLARSLDSPSSRSAN 269 Query: 128 ----RRFIADSNIRVEMVS----DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 R D+ E + G T + S + E+ + + Sbjct: 270 TRVIRLRHNDAKSLAETLGEISEGLKTQEGSEATGRQSNILIRADESLNALVLLAEPDLV 329 Query: 180 SS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L++ QV ++ I EV DI +G Q ++ G Sbjct: 330 ATLEDIVRQLDVP-RAQVMVEAAIVEVSGDITDALGVQWAVDARGRTGGLGGVNFGGTGL 388 Query: 239 V---------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + + F ++ AL + L+ P+L + Q Sbjct: 389 SVGTVLQILQSGEIPENTTLPDGAIIGVGSDRFGALITALSANSKSNLLSTPSLLTLDNQ 448 Query: 284 SASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 A G ++T S + T++ D GV L TP + + L I+ E+ Sbjct: 449 KAEILVGQNVPFQTGSYTTDASGAGNPFTTIERKDIGVTLKVTPHINEGATLRLEIEQEI 508 Query: 337 SEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 S R +T+ G IVL GL++DD+ Q +PLL IP+ Sbjct: 509 SSIAPSTGLNAQAVDLVTNKRSIKSTILADDGQVIVLGGLIQDDVTQATSKVPLLGDIPL 568 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424 LG LFR++R + + + + P +V+ A Sbjct: 569 LGGLFRSTRDSHIKRNLMVFLRPTVVRDGAG 599 >gi|260767306|ref|ZP_05876246.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972] gi|260617713|gb|EEX42892.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972] gi|315181306|gb|ADT88220.1| MSHA biogenesis protein MshL [Vibrio furnissii NCTC 11218] Length = 547 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 65/308 (21%), Positives = 114/308 (37%), Gaps = 31/308 (10%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E ++ G +++ + +A L+ R ++ +N+ + QV Sbjct: 222 QLEKAVSRLIGSGRGQSVVVTPQAGVLTLRAYPDEVREV------RQFLNVSQQRMQRQV 275 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG------PSKSFAADFGGKFVSEGGDFSVKGV 250 L+ I EV Q G S +G S + G + Sbjct: 276 ILEAKILEVTLTDGYQQGINWSNMSFGNGKVVIDRIGSSASTLPGLDAIGTLLSGQTNIT 335 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--------- 301 + SF +VL + + L+ P +TA + Q A G Y T SS Sbjct: 336 VSDGSFSSVLSFMATQGDLNVLSSPRVTAANNQKAVIKVGSDEYYVTDLSSVVGSGDNTQ 395 Query: 302 -TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMP--SY 351 +T G+ L TP + G + L + V E + +P Sbjct: 396 AAPDVELTPFFSGISLDVTPQIDDKGNVLLHVHPSVIEVTQQDKEITYNDSTFTLPLARS 455 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 +R++D+ + +G +V+ GL+K + +P L IP LG LFR++ E+TE+ Sbjct: 456 SIRESDSVIRAQNGDVVVIGGLMKTNTSNKVSKVPFLGDIPALGHLFRSTTELTEKTELV 515 Query: 412 IAATPFLV 419 I P +V Sbjct: 516 ILLKPTVV 523 >gi|89075297|ref|ZP_01161724.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34] gi|89048978|gb|EAR54546.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34] Length = 541 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 67/299 (22%), Positives = 113/299 (37%), Gaps = 26/299 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 V+ GM+ + V +S + + + + QV L+ I EV Sbjct: 220 VVSGMIGSGDGRNVMVSPQAGLISVRAFPNELREVKE-FLGMSQRRLKRQVVLEAKIMEV 278 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSVKGVLDRFSFETVL 260 D Q G S S + A GG +SE L +F+ V+ Sbjct: 279 TLDDSYQQGINWSYLTKSGNGITTGTASIVEALPGGNAISELLGGQTNITLSDGNFKAVM 338 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSVTTH 310 L + L+ P +TA + Q A GG + T SS+ S+T Sbjct: 339 SFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNNVSPDVSLTPF 398 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS----------YRVRKADTTV 360 G+ L TP + G + L + V + ++ + +R++D+ + Sbjct: 399 FSGISLDVTPQIDDQGGVLLHVHPAVIDVQNEQKTIEVGTEKPMVLPLAKSTIRESDSII 458 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G +V+ GL+K I +PLL IP +G LFR+ +++TE+ I P +V Sbjct: 459 HARTGDVVVIGGLMKSSINDQVSKVPLLGDIPWVGNLFRHINKVKKKTELVILLKPTVV 517 >gi|15600233|ref|NP_253727.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa PAO1] gi|12230952|sp|P34750|PILQ_PSEAE RecName: Full=Fimbrial assembly protein pilQ; Flags: Precursor gi|9951330|gb|AAG08425.1|AE004917_4 Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa PAO1] Length = 714 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 96/269 (35%), Gaps = 35/269 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228 ++++ L+I QV ++ I E K +G + S Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKDGNIGIKDEDG 496 Query: 229 ----------SFAADFGGKFVSE---------GGDFSVKGVLDRFSFETVLHALERATAI 269 +F K S + + D + L A+E+ Sbjct: 497 MNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 +++P + ++A G + Y+ SSS ++ + + + L TP + RI Sbjct: 557 EIVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + ++ P +P + + + + G TIV+ G+ ++ + E +P L Sbjct: 616 VEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLG 675 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418 ++P LG LFR + E+ + TP + Sbjct: 676 ELPYLGRLFRRDTVTDRKNELLVFLTPRI 704 >gi|186477543|ref|YP_001859013.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815] gi|184194002|gb|ACC71967.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815] Length = 523 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 70/432 (16%), Positives = 144/432 (33%), Gaps = 47/432 (10%) Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84 P + A + + + + I++ + + V A Sbjct: 101 GPPVLLAPAARLSESASASVPADRPITLHFQRGELGAVLGAFAK-FTGLNIVASDKARGA 159 Query: 85 RTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 T++L A L+ +G M +++ + L R+ E + Sbjct: 160 VTLHLNSVPWRTAFDTLLDVNGLAMEQRGNVIWVAPQSELAARERQRF-------ETHAR 212 Query: 144 TVVLHGMVRTIQD-----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-------- 190 L + + ++ +L +Q ++ + + NLL + Sbjct: 213 AAELEPLASRTFELHYAHAEELRKLLTASGNQRVLSKRGAAMADPRTNLLFVTDLAARLA 272 Query: 191 ----------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------SGPSK 228 QV ++ I E + + +G + S+ G++ G Sbjct: 273 QIAELVASLDRPTRQVLIEARIVEAEKGFSRNLGVKLSMIGTNEDGKATGLVGGKDGAIL 332 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 +A F + ++ L ALE + ++ P + A Sbjct: 333 DLSARPVSGFDAATMGLTLFAAQATRLVNIELSALEAEGRGQIVSSPRVVTADRMKAVVE 392 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 393 QGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVAKDSVGEQTASG 449 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ + T VE+ GGT+ + G+ + D + +PLL KIP+LG FR+ + Sbjct: 450 PAINTKHVQTRVEVEDGGTVSIGGIYETDGRDDVTRVPLLGKIPVLGVFFRHRAHRDLRS 509 Query: 409 EIFIAATPFLVK 420 E+ + TP +V+ Sbjct: 510 ELVVFITPRVVQ 521 >gi|167626079|ref|YP_001676373.1| general secretion pathway protein D [Shewanella halifaxensis HAW-EB4] gi|167356101|gb|ABZ78714.1| general secretion pathway protein D [Shewanella halifaxensis HAW-EB4] Length = 720 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 105/279 (37%), Gaps = 43/279 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 394 Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + G + + F ++ A+ T Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDT 454 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPT 321 LA P++T + Q ASF G + + +S +V + GV L P Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 V + L I+ EVS ++ R+ TTV SG +VL GL+K+++Q+ Sbjct: 515 VNEGNAVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLIKEEVQES 572 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +P L IPI+G LF++S +++T + + P +++ Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKTNLMVFIKPTIIR 611 >gi|256823530|ref|YP_003147493.1| general secretion pathway protein D [Kangiella koreensis DSM 16069] gi|256797069|gb|ACV27725.1| general secretion pathway protein D [Kangiella koreensis DSM 16069] Length = 708 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 69/296 (23%), Positives = 112/296 (37%), Gaps = 60/296 (20%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 V+ L+I QV ++ I E+ + K++G Q + S + +F Sbjct: 350 DSVIRALDIR-RKQVHVEAIIVEISDNKAKELGIQWLFSPEGSNTTPGGVVNFTNTGPGI 408 Query: 242 GGDFSVKGVL-------------------------------------------------- 251 G + Sbjct: 409 GQVAAGAISARGTEEEVFTRDPETGEITGTETRRVGGDNGAALAEVLGGMQGLGLGVAKI 468 Query: 252 --DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGA 304 D FS+ + ALE T TL+ P++T + A F SG + T ++S Sbjct: 469 RPDGFSWGAFIRALEGVTDSNTLSRPSVTTLDNVEAIFKSGQEIPIITGSTLGDNNSNPF 528 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 +V D GV+L TP + + L I+ EVS N + R+ T+V +P Sbjct: 529 QNVERKDVGVMLKLTPQINEGNYVRLDIEQEVSSIAGSTNVDVV--TNKREVKTSVLVPD 586 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GG +VL GL+ DDIQQ + +P+L IP+LG F++ R + + + I P ++K Sbjct: 587 GGMVVLGGLIDDDIQQSSQKVPILGDIPVLGHAFKSQRTQKIKRNLMIFIHPTVLK 642 >gi|319786312|ref|YP_004145787.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1] gi|317464824|gb|ADV26556.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1] Length = 619 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 97/257 (37%), Gaps = 27/257 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------- 240 DQV ++ I + +G + I G SG + + + S Sbjct: 358 RPVDQVLIESRIVIASDSFARDLGARFGIQGRRSGNNTAAIGGSLNQTGSIVNGGVGVPG 417 Query: 241 -----------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G + + F+ + L AL++ L+ P + + + A Sbjct: 418 GLNVNLPATAENAGALAYTLLGANFALDLELSALQQEGRGEVLSNPRVVTSNQREAVIRQ 477 Query: 290 GGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GV 343 G + Y T++ +V + + L TPT+ S R+ + + E + Sbjct: 478 GREVGYVTLTGGGNQAFATPNVQFKEVVLELKVTPTITSDDRVFMAVNVLKDEVLQYIDT 537 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + G +P R+ +T V + G T+V+ G+ + +P L +P LG LF+ Sbjct: 538 SIGQVPEIATREINTAVLVDDGQTVVIGGVYEFTDSNSVSKVPFLGDVPFLGNLFKKKSR 597 Query: 404 NREETEIFIAATPFLVK 420 +E+ E+ I TP +++ Sbjct: 598 LKEKAELLIFLTPKVMR 614 >gi|157377398|ref|YP_001475998.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3] gi|157319772|gb|ABV38870.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3] Length = 682 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 107/281 (38%), Gaps = 25/281 (8%) Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 ++ + + + + V L+ + QV ++ + V+ D+ +++G + +T Sbjct: 399 VAVDERTNTLLVKDTEDILENVHRLIEVLDIPIRQVLIESRMVTVKDDVSEELGIRWGVT 458 Query: 221 GSSSGPSKS--------------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 S + + F V + D + L Sbjct: 459 DQQGDKGTSGSLEGAESISNGIVPALVDRLNVNLPASTGAARVAFHVAKLADGTVLDMEL 518 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALE+ +A P + S Q A++ G + +SS+GA +++ + L TP Sbjct: 519 SALEKEDKGEIIASPRIMT-SNQKAAYIEQGVEIPYLEASSSGAATISFKKAVLSLRVTP 577 Query: 321 TVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + R+ L ++ V+ G S ++ T V + G TIVL G+ + + Sbjct: 578 QITPDNRVILDLEITQDSQGKVVATPLGSAVSIDTQRIGTQVLVDHGETIVLGGIYQQQL 637 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+L IP +G LFR++ E+ I TP ++ Sbjct: 638 INRVSKVPVLGDIPFVGFLFRSTTDENNRQELLIFVTPKII 678 >gi|107104140|ref|ZP_01368058.1| hypothetical protein PaerPA_01005213 [Pseudomonas aeruginosa PACS2] Length = 714 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 93/269 (34%), Gaps = 35/269 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236 ++++ L+I QV ++ I E K +G + S G Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKDGNIGIKDEDG 496 Query: 237 ---------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + + D + L A+E+ Sbjct: 497 MNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 +++P + ++A G + Y+ SSS ++ + + + L TP + RI Sbjct: 557 EIVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + ++ P +P + + + + G TIV+ G+ ++ + E +P L Sbjct: 616 VEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLG 675 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418 ++P LG LFR + E+ + TP + Sbjct: 676 ELPYLGRLFRRDTVTDRKNELLVFLTPRI 704 >gi|163749924|ref|ZP_02157169.1| general secretion pathway protein D [Shewanella benthica KT99] gi|161330438|gb|EDQ01417.1| general secretion pathway protein D [Shewanella benthica KT99] Length = 711 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 59/305 (19%), Positives = 110/305 (36%), Gaps = 47/305 (15%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + +ET + V+N L+I QV ++ I EV G Q + Sbjct: 313 IMAHAETNALVITAQPDQMRTIDSVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGIQWAT 371 Query: 220 TGSSSGPSKSFAADFGGKFV--------------------------------------SE 241 + G + Sbjct: 372 AAGGMTQFNNLGPTIGEVGAGVWLAQDQKASQTCTGSGDTQTCTKNPDTPGDITILAQAL 431 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL------Y 295 G + + F ++ A+ T LA P++T + Q A+F G + Sbjct: 432 GKINGMAWGVAMGDFGALIQAISSDTRSNILATPSITTLDNQEATFIVGDEVPILTGSQS 491 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + +S T+V + GV L P + + L I+ EVS + ++ R+ Sbjct: 492 SSNGNSNPFTTVERREVGVKLKVIPQINEGTSVKLTIEQEVSGINGKTSVD--VTFATRR 549 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 TTV + SG +VL GL+ +++Q+ + +P L +PI+G LFR+S ++++ + I Sbjct: 550 LTTTVMVDSGQIVVLGGLISEEVQESVQKVPFLGDLPIIGHLFRSSSSSKKKKNLMIFIK 609 Query: 416 PFLVK 420 +++ Sbjct: 610 ATIIR 614 >gi|121593158|ref|YP_985054.1| type IV pilus secretin PilQ [Acidovorax sp. JS42] gi|120605238|gb|ABM40978.1| type IV pilus secretin PilQ [Acidovorax sp. JS42] Length = 696 Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 91/246 (36%), Gaps = 23/246 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT--------------------GSSSGPSKSFAAD 233 QV ++ I E R + +G + GS P S A Sbjct: 447 RQVMIEARIVEARDTFGRSLGVRLGGGSRTGGSAVGGTYDNVAGPTGGSGMSPFVSLPAS 506 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G S+ L A+E + ++ P L A G ++ Sbjct: 507 LSGVSTVGSFALSIFNSNASRFLSLELSAMEADGQGKIVSSPRLITADQTKALIEQGTEY 566 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 Y + GAT++ + L TP + G I L + +V++ G + Sbjct: 567 PYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGNIILDL--DVNKDSRGETTTQGVAIDT 623 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + T V + +GGT+V+ G+ + + + IP+L +P++G LF+N + E+ + Sbjct: 624 KHVKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGNLFKNRTKESTKREMLVF 683 Query: 414 ATPFLV 419 TP ++ Sbjct: 684 ITPKVI 689 >gi|330446773|ref|ZP_08310424.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490964|dbj|GAA04921.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 539 Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats. Identities = 69/309 (22%), Positives = 121/309 (39%), Gaps = 31/309 (10%) Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 +++E V ++ G R++ S +A +S R K+ + + + Q Sbjct: 213 VQLEKVVSGMIGSGDGRSVMVSPQAGLISVRAFPNELREV------KEFLGMSQKRLKRQ 266 Query: 196 VTLKVTIAEVRRDILKQIGFQHSI-----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 V L+ I EV D Q G S G + G + GG +S+ Sbjct: 267 VVLEAKIMEVTLDDSYQQGINWSYLTKSGNGITMGTAAIVDGLPGGNAISDLLGGQTNIT 326 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302 + +F V+ L + L+ P +TA + Q A GG + T SS+ Sbjct: 327 ISDGNFNAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNT 386 Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---------- 350 S+T G+ L TP + G + L + V + ++ + Sbjct: 387 VSPDVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNEEKKIEVGTAKPMVLPLAK 446 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++D+ + +G +V+ GL+K I +PLL IP +G LFR +++TE+ Sbjct: 447 STIRESDSIIHARTGDVVVIGGLMKSTINDQVSKVPLLGDIPGVGNLFRQINKVKKKTEL 506 Query: 411 FIAATPFLV 419 I P +V Sbjct: 507 VILLKPTVV 515 >gi|170729053|ref|YP_001763079.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908] gi|169814400|gb|ACA88984.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908] Length = 714 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 104/283 (36%), Gaps = 47/283 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVSEGDDVGFGVQWATAAGGGTQFNNLGPTIGEIGAGV 396 Query: 236 ----------------------GKFVSEGGDFSVKGVLDR----------FSFETVLHAL 263 + G + L + F ++ A+ Sbjct: 397 WNARDQKASQTCSGSGDNQTCTDNPDTPGDITLLAQALGKVNGMAWGVAMGDFGALIQAV 456 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVTTHDYGVVLH 317 T LA P++T + Q ASF G + T + S +V + GV L Sbjct: 457 SSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGAQNSSNGNSNPFQTVERKEVGVKLK 516 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + L I+ EVS ++ R+ TTV SG +VL GL+ ++ Sbjct: 517 VVPQINEGSSVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINEE 574 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +Q+ + +P L IPI+G LF++S +++ + + P +++ Sbjct: 575 VQESVQKVPFLGDIPIIGHLFKSSSSGKKKKNLMVFIKPTIIR 617 >gi|330881978|gb|EGH16127.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 334 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 105/263 (39%), Gaps = 26/263 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V++ L+ QV ++ I EV D Q G Q + G + G Sbjct: 6 EVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQTGNLNGSGGFGGVNLGGSGLNTGG 64 Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 G ++ G+ + + + AL+ L+ P L + ++A Sbjct: 65 STSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAA 124 Query: 286 SFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 S G + T +S+ +V + G+ L+ P + G + L I EVS Sbjct: 125 SIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVS 184 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + R DT++ L G +VL GLL+D Q E +P LS+IP+LG L Sbjct: 185 NVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVL 244 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 FRN + +T + + P++++ Sbjct: 245 FRNEARSTSKTNLMVFLRPYIIR 267 >gi|114797223|ref|YP_760566.1| general secretion pathway protein D [Hyphomonas neptunium ATCC 15444] gi|114737397|gb|ABI75522.1| general secretion pathway protein D [Hyphomonas neptunium ATCC 15444] Length = 653 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 80/480 (16%), Positives = 153/480 (31%), Gaps = 59/480 (12%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 L R + + + ++ N V+ + + ++I L++ + Sbjct: 130 KLDRANAMEAAQMIKPLLDAQGQVVANAGTNTLVVVDYASNLERVRRIIETLDRDQTVTE 189 Query: 63 PVDVQDV-LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 V + +V V T + P G+ + + + +L D Sbjct: 190 TVPLTNVPAVEIETVLTRLQGDPSAQ--QGQAPSRLSAVASLTSNSIILRGDATSVERAK 247 Query: 122 HLEMTLRRFIADSN-IRVEMVS-----DTVVLHGMVRTIQDSQRAVELSETFLSQSG--- 172 + + L + +RV ++ + V + V QRA + Sbjct: 248 RVALELDATNPQRDHVRVITLNYADAEEVVPILERVANSMAMQRAPSETAPVAQTIAHHG 307 Query: 173 --------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 N + ++V+ L++ QV ++ I E+ D +++G Q + G+ Sbjct: 308 PTNSLIISANPETILAMERVVTALDVRRP-QVMVEAIIVEMSDDAARELGLQFLLAGTGG 366 Query: 225 GPSKSFA--------------------------------ADFGGKFVSEGGDFSVKGVLD 252 + A S G G Sbjct: 367 DVPFASTNFSRAAPNLLALTGALVTDAFEDPAAENPFREAAISSLTGSSGLTLGFGGTSG 426 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSV 307 F +L+A+E TA R L+ P ++ +++ G + T +S +V Sbjct: 427 DNLFGVILNAVEDDTASRILSTPFGMTLNNATSALIVGQEIPVTTGQVLGEANSNPFRTV 486 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGG 366 D G+ L TP + + L I+ EVS V R+ +V G Sbjct: 487 ERKDIGIQLEVTPRIGENDTVRLDIRQEVSSVFGSVGTVTPDLILDKREIRASVLADDGE 546 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IVL GL++ +P+L IP +G LFR+ + + P +V+ A Sbjct: 547 IIVLGGLVEQTDTLRDTKVPVLGDIPGVGRLFRSEGKAATRRNLMVFIRPTIVRNKADAQ 606 >gi|220932698|ref|YP_002509606.1| type II and III secretion system protein [Halothermothrix orenii H 168] gi|219994008|gb|ACL70611.1| type II and III secretion system protein [Halothermothrix orenii H 168] Length = 602 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 70/296 (23%), Positives = 115/296 (38%), Gaps = 21/296 (7%) Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 I I VE V + + L E Q + K+ + + Sbjct: 302 ELIPMEYIEVEKVPQLL------PNNFPAANVKVLKEKNALLVTGTQSDINKLKEYIKQI 355 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + V ++ + E+ R+ + + + F + G + K Sbjct: 356 DTRIPLIV-VEAVVVELTRNRQENPVIKLGMEYDGEEE---------LLFDTSMGKLTYK 405 Query: 249 GVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGA 304 VLD F + AL + A P +T ++GQ A G Y +T Sbjct: 406 SVLDLPDDFYLKIEALVTEGLLTVKARPNITTLNGQQAMIDVGTVQYYKVKQTDGEGNEE 465 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T + + GV L TP V S G I L+++ +VS A P R+ DTTV + Sbjct: 466 TQYQSINAGVSLTVTPWVSSSGEITLKLRPQVSNI-GAAAAEGPPQVSRREVDTTVRVKD 524 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+V+ GL++D +P L+ IP++G LF++ N +TE+ I TP ++K Sbjct: 525 GQTVVIGGLIQDVGTNTTSKVPFLANIPLIGKLFKSRNNNVNQTELIIFITPRVLK 580 >gi|120554944|ref|YP_959295.1| general secretion pathway protein D [Marinobacter aquaeolei VT8] gi|120324793|gb|ABM19108.1| general secretion pathway protein D [Marinobacter aquaeolei VT8] Length = 649 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 84/465 (18%), Positives = 168/465 (36%), Gaps = 63/465 (13%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVL 70 + L L + ANA +++ I + ++I L+ +V V +Q+ Sbjct: 141 LVPILRPLVAKYGHLAGVAAANALIVSDHASNIARIEQIVRELDSPSKYEVEVIQLQEAW 200 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDILIERDIAHLEM 125 V D + +P + G+ G+ +V + +L D + L + Sbjct: 201 VGD-MVTLLQELAPEEL---GRAGGENAARKYSVTADERSNRLILRGDETFRDKMRGLIL 256 Query: 126 TLRRFIADSNIR-------VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------ 172 L + A + + T +L G++ + A S G Sbjct: 257 QLDQPSASGGTTKVIRLRHADAKTLTEILKGVMGEVVKEGSAGGSSGGSAGNPGSSFSVF 316 Query: 173 -----------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + +++++ L++ QV ++ I E+ ++ Q+G Q + Sbjct: 317 ADEGLNALVVRGDPSLMQEAEQIVAQLDVR-RAQVMIEAAIVEISDELGDQLGVQLAAGD 375 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--------------------RFSFETVLH 261 S+G + G + + ++ ++ ++ Sbjct: 376 ESAGSFPVLGTNLTSGQGMVGLNSVIGALVGDTIPQLAGGLTVGAGQRDEDGVTWGLLIQ 435 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGV 314 AL ++A L+ P++ + Q + G ++T S+ T++ D G+ Sbjct: 436 ALSSSSAANLLSTPSIITLDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERRDVGL 495 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 L TPT+ + G + L ++ + V+ R+ TTV G T+VL GL Sbjct: 496 SLKVTPTISADGLVRLVVEQTTEDISTTSVDGASDLITNKREIKTTVLADDGETVVLGGL 555 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +KDD Q K +PLL IP+LG LF + R + + + P + Sbjct: 556 IKDDYQVSKSKVPLLGDIPVLGRLFSSESETRVKRNLLVFLRPTI 600 >gi|313110575|ref|ZP_07796459.1| secretion protein XqhA [Pseudomonas aeruginosa 39016] gi|310882961|gb|EFQ41555.1| secretion protein XqhA [Pseudomonas aeruginosa 39016] Length = 776 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 95/508 (18%), Positives = 169/508 (33%), Gaps = 60/508 (11%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 Q+T + + P+ L + ANA +++ I + + I L++ + Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206 Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D++ V+ A+V+ S GK+ V+ + +L + L Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262 Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166 +L A+S + D L G + + ++ Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLHGERGQDGRGSGKRGLLVRADE 322 Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 L+ + ++ L++ Q+ ++ I E+ +I +G Q ++ Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381 Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 FA G L F ++ AL R + L+ Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441 Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327 P+L + Q A G ++T S SS T+V D GV L TP + Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501 Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ E+S R +TV G IVL GL++DD+ + Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSR 561 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP +G LFR+SR R + + + P +V+ A + Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472 R I + A+ + G I Sbjct: 607 HGRYRSIQLLRGAAGEPVRPLFEDAGAI 634 >gi|145300802|ref|YP_001143643.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp. salmonicida A449] gi|88866576|gb|ABD57345.1| MshL [Aeromonas salmonicida subsp. salmonicida A449] gi|142853574|gb|ABO91895.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp. salmonicida A449] Length = 556 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 63/273 (23%), Positives = 105/273 (38%), Gaps = 33/273 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------EGG 243 + QV L+ I EV + + G S +S +K Sbjct: 274 KRQVVLEARILEVALNEGYEQGVDWSGLSASWDGNKGITGGSSLSPTQLPTTPNQIFTAL 333 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST- 302 + +F ++ L+ + TL+ P +TA + Q A G + T +S+T Sbjct: 334 GGGAGFKISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYFVTKASTTI 393 Query: 303 -----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 +T G+ L TP + G++ L I V + DM + Sbjct: 394 TSNSSGVSDRTPNVELTPFFSGISLDVTPQIDEEGKVLLHIHPSVIDTEEQNKVIDMGTS 453 Query: 352 -----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +R++DT V+ +G IV+ GL+K D Q++ +PLL IP +G F N Sbjct: 454 GGRLELPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPWIGEAFTN 513 Query: 401 SRFNREETEIFIAATPFLV-KPVAMRDLSRPDD 432 R + ++ E+ I P +V K +L R D Sbjct: 514 RRESTKKVELVILLKPTVVEKDTWQNELKRSAD 546 >gi|71280237|ref|YP_271224.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H] gi|71145977|gb|AAZ26450.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H] Length = 609 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 59/300 (19%), Positives = 110/300 (36%), Gaps = 32/300 (10%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 V G R++ S +A ++ L Q + KK + QV ++ I EV Sbjct: 249 VGTGEGRSVIVSPQAGLVTVRALPQELT------AVKKFITATESHLHRQVIIEAKIMEV 302 Query: 206 RRDILKQIGFQHSITGSSSGP-------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 + Q G + + G + + + + + F Sbjct: 303 TLNDDFQQGIKWNKVLDQVGSADIIYSTTGNVVGNVISNTIGGVNSINFSKQTSGSDFSG 362 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----------SSSTGATSVT 308 V+ L+ ++ L+ P +TA + Q A G + T +++T +T Sbjct: 363 VIELLQTQGNVQVLSSPRITATNNQKAVIKVGEDEYFVTEVSSTTTTGTSTTTTPEVELT 422 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMPSYRVRKADTT 359 G+ L TP + G + L + V+ + + VR++DT Sbjct: 423 PFFSGIALDVTPQISKDGSVILHVHPSVTITEEQSKTIKIGDTTLVLPLAQSSVRESDTI 482 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + SG +V+ GL++ ++ P+L IP LG LF+N ++ E+ I P +V Sbjct: 483 IRANSGEVVVIGGLIETYNIDIESKTPILGDIPYLGELFKNKSQKSQKRELVIMLKPIVV 542 >gi|331010889|gb|EGH90945.1| general secretion pathway protein D [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 778 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + T + + ++V++ L+ QV ++ I EV D Q G Q Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G + G G ++ G+ + + + Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 544 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + ++AS G + T +S+ +V + G Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L+D Q E +P LS+IP+LG LFRN + +T + + P++++ Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 711 >gi|262373636|ref|ZP_06066914.1| general secretion pathway protein D [Acinetobacter junii SH205] gi|262311389|gb|EEY92475.1| general secretion pathway protein D [Acinetobacter junii SH205] Length = 709 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 107/326 (32%), Gaps = 47/326 (14%) Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 +A + + V + G V + + +K+++LL+ Sbjct: 387 RLAGGELSADNVGGVLSARGTVSIDPRTNTLI---------INDTSQKIDQIRKMIDLLD 437 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--------------------- 228 ++ + QV ++ I D K++G + I + Sbjct: 438 VSVK-QVMIEARIVRASTDFTKEMGVKWGILSQGIASNNDLLVGGSDTTLWNLREPTADS 496 Query: 229 -------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + + G L F + L A++ ++ P Sbjct: 497 ETGGWKYDIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVVSTP 556 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + Q+A SG Q Y + + D + L TP++ G++ +++ Sbjct: 557 KVLTADKQAAKIESGTQIPYSSSTGGGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLN 616 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 P G + + DT V + +G T+VL G+ + + + +P L +P Sbjct: 617 ITKDSPGTPTPTGQL-TINKNTIDTNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLPY 675 Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419 +G LFR + E+ I TP +V Sbjct: 676 VGKLFRRESKQDNKRELLIFVTPRIV 701 >gi|237801193|ref|ZP_04589654.1| general secretion pathway protein D [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024050|gb|EGI04107.1| general secretion pathway protein D [Pseudomonas syringae pv. oryzae str. 1_6] Length = 333 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 63/308 (20%), Positives = 111/308 (36%), Gaps = 21/308 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205 G + + ++ S + + K++ + + QV ++ I EV Sbjct: 12 SGSAGNGKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEV 71 Query: 206 RRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 +G Q S T + + G + G + + + Sbjct: 72 SLTGELDMGVQWYLGRLAGNSGTTGNVANTAGSQGALGTGGAALGATDAFFYSFVSNNLQ 131 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHD 311 L ALER + L+ P+L ++ Q A G S +T ++ V Sbjct: 132 VALRALERNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQ 191 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTI 368 GV+L P + G + + IQ +VS + P R T V SG TI Sbjct: 192 TGVILDVVPRINPGGLVYMDIQQQVSNADNNASNNDANGNPRISSRSVSTQVAAQSGQTI 251 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +L GL+K D + + +P L +IP L LF + ++ TE+ + TP ++ + Sbjct: 252 LLGGLIKQDNAETVDAVPYLGRIPGLRWLFGTTSKSKGRTELIVLITPRVI--TSSSQAR 309 Query: 429 RPDDHYSV 436 + D Y Sbjct: 310 QVTDDYRQ 317 >gi|326315687|ref|YP_004233359.1| general secretion pathway protein D [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372523|gb|ADX44792.1| general secretion pathway protein D [Acidovorax avenae subsp. avenae ATCC 19860] Length = 804 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 40/276 (14%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG- 249 QV ++ I EV + + + G Q + G + GG+ ++ Sbjct: 436 GRRAQVLVESLIVEVSANKVAEFGIQWQGVMGNYGNGTIGVIGTNSSASTTGGNANILNL 495 Query: 250 ------------------------------VLDRFSFETVLHALERATAIRTLAEPTLTA 279 + + + + LE L+ P L Sbjct: 496 ALAAATGNATSIASSASGLGKGLNVAIAPRINGNYYLGALANFLENTGDANVLSTPNLMT 555 Query: 280 ISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + A G + T S + T+V D G++L P + G + L Sbjct: 556 LDNEEAQIIIGNNVPFVTGSYANTTGSSTVNPFTTVERKDVGLMLRVRPQINENGTVKLS 615 Query: 332 IQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + EVS+ NA + P+ R ++TV + G IVL GLL+D ++ +PL+ Sbjct: 616 LYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGNVIVLGGLLEDRYSMGQDKVPLMGD 675 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +P++G LFRN R++T + + P +++ A D Sbjct: 676 LPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSD 711 >gi|291612584|ref|YP_003522741.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1] gi|291582696|gb|ADE10354.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1] Length = 688 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 18/250 (7%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------------KSF 230 + L++ QV ++ E + +G + S TG S + + Sbjct: 437 VKQLDVPVR-QVMIEARFVEAGETFNQTLGGRLSYTGPGSTVAGGGFAGPAGNRAALSTT 495 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + G V+ G ++ L+A E + +A P + A+ SG Sbjct: 496 SLLPGAGSVTGGMTLNLFNAAATKVLTLELNASELDGTTKNIASPRVVTGDKTPATIESG 555 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y +SS GATSV + L TP + +G+++ VS+ +G +PS Sbjct: 556 VEVPYLQATSS-GATSVAFKKAVLGLTVTPQITPDDHVGMKLS--VSQDTVGNIYSGVPS 612 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +K DT V + +GGT+V+ G+ D KE IPLL IPILG LF+ + + E+ Sbjct: 613 INTKKVDTQVLVDNGGTVVIGGVYTQDATDSKEQIPLLGDIPILGWLFKTDTIVKAKKEL 672 Query: 411 FIAATPFLVK 420 + TP +VK Sbjct: 673 LVFITPKIVK 682 >gi|288574989|ref|ZP_06393346.1| type II and III secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570730|gb|EFC92287.1| type II and III secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 570 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 82/440 (18%), Positives = 148/440 (33%), Gaps = 74/440 (16%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL----VSDPTKADVVVHSPR----- 85 + ++IS+ V I V + D++ V DP+ A++ + R Sbjct: 150 RIPVDGSDPFQTNRRISVDFRSVDIQDVFRMLADMMKVNIVLDPSVAEIPPLTMRFDEAP 209 Query: 86 --TMY-----LFG---KNVGQANVILIGHD-----GKQMLNLDILIERDIAHLEMTLRRF 130 ++ L+G VG+ VI G++ + + D+ L L Sbjct: 210 LREVFGYLMRLYGLSYAKVGKTLVIGSPEGISKVMGEEKTRVYDVAYSDVKTLPDMLGGL 269 Query: 131 --IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 I I V+ + + G + D +R ++ + Sbjct: 270 TTIPKEKITVDERLGRLFVKGSENQLSDFERVLQTVDD---------------------- 307 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------------ 236 QV L+ I E++ + ++ + S S + GG Sbjct: 308 ---PGKQVMLRARIIEIKDEASDELETMLNAVYKHWWLSTSSSGAEGGYSYVKDPDSYNP 364 Query: 237 --------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G + G +T L AL A + LA P++ +SGQ AS Sbjct: 365 PTGEDRPGGIEFPGIEIPDIGTGGIRLLDTGLKALVTANKGKVLANPSVITVSGQKASIK 424 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNA 345 Y + G + + + G L FTP V G I + + EV G Sbjct: 425 LVENLKYISARDDAGNPTYSDEEVGPKLEFTPLVGRDGVISVELSIATGEVIAWKEGNQG 484 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + P R+ T++ + G V+ GL + + IP+L IP+LG F++ Sbjct: 485 EEFPQTSEREVVTSIRVRDGEPFVVGGLFNERHTENTTKIPILGDIPLLGEFFKSKSKTD 544 Query: 406 EETEIFIAATPFLVKPVAMR 425 + TE+ + P+++ Sbjct: 545 DRTEVVMVVIPYILNVTDGP 564 >gi|308535177|ref|YP_002137419.2| type II secretion system protein GspD [Geobacter bemidjiensis Bem] gi|308052522|gb|ACH37623.2| type II secretion system protein GspD, putative [Geobacter bemidjiensis Bem] Length = 640 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 15/255 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVS 240 +V+ L+ QV ++ IAEV + K++G Q + +S + S F G Sbjct: 346 QVIQKLD-RRSRQVFVQAMIAEVSANKAKELGLQWGVVTGASNGTLSTVGTFDPFGAVAG 404 Query: 241 EGGDFSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G ++ G L F L AL+ A+ L+ P + + A G Sbjct: 405 LTGTLTLAGQLGITPPDAGVALFPATLKALQSNGALNVLSTPNIMTSDNKEAEIFVGENV 464 Query: 294 LYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDM 348 + + ++ T S+ D G++L P + I L I E+S G Sbjct: 465 PFLSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYIKLDIYQEISAVKDFGTATNPN 524 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R A T+V + + T+++ GL++D Q + IPLL IP+LG LF+ + R++T Sbjct: 525 LGSTKRSAKTSVVVKNTDTVIIGGLIQDTDQVTESKIPLLGDIPLLGWLFKTKKTTRDKT 584 Query: 409 EIFIAATPFLVKPVA 423 + I TP ++K Sbjct: 585 NLLIMLTPRIIKDAR 599 >gi|116688415|ref|YP_834038.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424] gi|116646504|gb|ABK07145.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424] Length = 543 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 78/435 (17%), Positives = 146/435 (33%), Gaps = 42/435 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P + PP + ++AA + ++IS+ L V + + Sbjct: 87 GPPIPLAPPARMSDAAA--RQPGDADDARRISLNLQGVGLAAAFDAIAR-FTGLNIVVGE 143 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRV 138 V T+ L +A L+ G M +++ A L R + Sbjct: 144 QVRGTVTLRLNNVRWREAFDTLLDTHGLAMSRRGNVIWVTPAAELAARERERF---EMHA 200 Query: 139 EMVSDTVVLHGM-VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------- 190 + V +Q L Q ++ +++ NLL + Sbjct: 201 RAADLEPLASRTFVLHYPRAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRI 260 Query: 191 -----------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----------- 228 QV ++ I E + + +G + ++ P+ Sbjct: 261 TQIAGLIDAIDRPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPAAEGASFTANARN 320 Query: 229 --SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 AA G F + F++ + L ALE + ++ P + A Sbjct: 321 ALDLAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAI 380 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 381 VEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTA 437 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P+ + T VE+ +GGT+ + G+ + + +PLL KIP LGALFR+ + Sbjct: 438 AGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQ 497 Query: 407 ETEIFIAATPFLVKP 421 E+ + TP +V Sbjct: 498 RNELVVFITPTVVDA 512 >gi|89093502|ref|ZP_01166450.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92] gi|89082192|gb|EAR61416.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92] Length = 702 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 25/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS----------------------SSGPSKSFA 231 +QV ++ + ++ K +G + + ++G + + Sbjct: 451 EQVLVEARLVNATSNVTKDLGVKWGFGYNDVDNGKGWIVDNSIGNVNFGNTTAGNTSNLM 510 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D G S G L ALE +++P + +G+ A SG Sbjct: 511 VDLGASVTSPGTIAIGFKPGASSLLALELSALETDGKAEIVSQPKVLTTNGKQAKIESGS 570 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 + Y+TV G S+ D + L TP + RI + + V S Sbjct: 571 EIPYQTV--EDGEVSIEFKDVVLSLDVTPRINPGDRIAMDLLITQDSI-GQVLPNGEISI 627 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + TTV +P G TIVL G+ K++ + +PLL +PI+G LFRN E+TE+ Sbjct: 628 DNNELQTTVVVPDGQTIVLGGVFKNETSETINKVPLLGDLPIMGPLFRNKENQAEKTELL 687 Query: 412 IAATPFLVK 420 I TP LV+ Sbjct: 688 IFITPKLVR 696 >gi|119898381|ref|YP_933594.1| general secretion pathway protein D [Azoarcus sp. BH72] gi|119670794|emb|CAL94707.1| general secretion pathway protein D [Azoarcus sp. BH72] Length = 675 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 75/434 (17%), Positives = 158/434 (36%), Gaps = 59/434 (13%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-------VQDVL--VSDPTKA 77 P E A + + + + ++ ++ + + V +++VL + + Sbjct: 186 PVTLEFREAPLRVVFEALARASGLNFVFDRDVRAESKVTLFVRSSTIEEVLGLIGATQQL 245 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 + + + ++ ++ + + + L D +R+ + ++ Sbjct: 246 ERKMLNANSVLVYPATPAK-----QKEYVELVTRSFYLANADAKQAMTMVRQLVKSKDVF 300 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V+ + VV+ AV L+ ++V+ L++A + V Sbjct: 301 VDEKLNMVVIKDTP-------DAVRLA-----------------ERVLASLDVAEPE-VM 335 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR---- 253 L+V + EV R+ L+ +G ++ + + + + Sbjct: 336 LEVEVLEVSRNKLQDLGIEYPTQVGYGLLTPNVTSTVSTAAGFATSTTLGGELAKGMINL 395 Query: 254 ----------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-- 301 + VL+ LA P + + + A G + T +++ Sbjct: 396 RDRGSLVPYVSNPGAVLNLRAEDGDTSLLANPRIRVKNREKAKIHIGEKLPVFTTTATAN 455 Query: 302 -TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKAD 357 + SV D G+ L P V + +++ EVS V V R A Sbjct: 456 VGVSASVNYLDVGLKLDVEPAVTLEDEVVIKVALEVSSIVKEVTGPSSSLAYQVGTRSAA 515 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TT+ L +G T VLAGL+ D+ + +P L ++P++G LF R + +TE+ + TP Sbjct: 516 TTLRLANGETQVLAGLINDEERSSARRLPGLGELPVVGRLFSAQRDSNTKTEVVLLITPR 575 Query: 418 LVKPVAMRDLSRPD 431 +V+ V L+R D Sbjct: 576 IVRNVVAPSLARAD 589 >gi|330940238|gb|EGH43375.1| general secretion pathway protein D [Pseudomonas syringae pv. pisi str. 1704B] Length = 295 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 92/242 (38%), Gaps = 17/242 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244 QV ++ I EV+ +G Q S T + + G + Sbjct: 21 PLQVQIETRILEVQLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 80 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTV 298 + + + L ALE + L+ P+L ++ Q A G Sbjct: 81 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 140 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRK 355 ++ T +SV GV+L P + G + + IQ +VS G A P R Sbjct: 141 NAGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTDTTGNGANGNPRISTRS 200 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V SG T++L GL+K D + +P L +IP L LF N+ ++ TE+ + T Sbjct: 201 VATQVAAQSGQTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLIT 260 Query: 416 PF 417 P Sbjct: 261 PR 262 >gi|1246517|emb|CAA60131.1| pulD-like [Escherichia coli] Length = 596 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 99/269 (36%), Gaps = 21/269 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + V++ L+I QV ++ IAE++ +G Q + S Sbjct: 265 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 323 Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + + + ++ +L AL ++ LA P++ Sbjct: 324 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 383 Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + A+F G + + S +T +V G+ L P + + L I+ Sbjct: 384 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 443 Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS + + ++ R + + + T+V+ GLL I+ + +PLL I Sbjct: 444 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNCETVVVGGLLDKSIRGSESKVPLLGDI 503 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P+LG LFR + + + P +++ Sbjct: 504 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 532 >gi|311105841|ref|YP_003978694.1| general secretion pathway protein D [Achromobacter xylosoxidans A8] gi|310760530|gb|ADP15979.1| general secretion pathway protein D [Achromobacter xylosoxidans A8] Length = 790 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 63/273 (23%), Positives = 106/273 (38%), Gaps = 30/273 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFV 239 +V++ L+ QV ++ I EV + G Q + G S + GG + Sbjct: 414 EVIDQLDQR-RAQVLVESLIVEVSEAKAAEFGIQWMTGAGNINSDGTSFIGGTNLGGSGI 472 Query: 240 SEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISG 282 + G ++ G+ + + A+E L+ P L + Sbjct: 473 TGKGPTTIDGIGSGLTLGVVKGTVDVLGNKVINLGVLARAMENTGEANILSTPNLLTLDN 532 Query: 283 QSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 QSAS G + T S+ ++ D G+ L+ P + G + L I Sbjct: 533 QSASILVGKTVPFVTGQYVTSGSNGSTNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQ 592 Query: 335 EVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 EVS NA R DT+V + G IVL GLL+D++ +PLL +P+ Sbjct: 593 EVSSIDESRSNATTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLSTNSVPLLGSLPV 652 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +G+LFR R +T + + P++V+ Sbjct: 653 IGSLFRYDSRKRTKTNLMVFLRPYVVRDANRTA 685 >gi|117625269|ref|YP_854407.1| putative type II secretion protein GspD [Escherichia coli APEC O1] gi|115514393|gb|ABJ02468.1| putative type II secretion protein GspD [Escherichia coli APEC O1] Length = 686 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|115350365|ref|YP_772204.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD] gi|115280353|gb|ABI85870.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD] Length = 553 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 109/295 (36%), Gaps = 34/295 (11%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197 + L Q ++ +++ NLL + QV Sbjct: 229 RALDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRIAQIAGLIDAIDRPSRQVR 288 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGD 244 ++ I E + + +G + ++ P+ AA G F + Sbjct: 289 IEARIVEGEQGFSRNLGARIALRAQGRAPTADGAASATDTRNALDLAARPLGGFEAATAG 348 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F++ + L ALE + ++ P + A G + Y+ G Sbjct: 349 FTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQGSELPYQ-AKVGNGV 407 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P + GR+ L + +V++ IG P+ + T VE+ + Sbjct: 408 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEN 465 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 466 GGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSELVVFITPTVV 520 >gi|163751006|ref|ZP_02158238.1| MSHA biogenesis protein MshL [Shewanella benthica KT99] gi|161329296|gb|EDQ00294.1| MSHA biogenesis protein MshL [Shewanella benthica KT99] Length = 560 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 92/250 (36%), Gaps = 24/250 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAADFGGKFVSEGGDFSVK 248 QV ++ I EV Q G G S ++ Sbjct: 280 RQVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTDIEFGTSTGGGSLSDQITSVIGGVTS 339 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 +F T++ L+ + L+ P +T ++ Q A G + T SST + +T Sbjct: 340 LKFSGTNFSTMISLLDTQGDVDVLSSPRVTVLNNQKAVIKVGTDEYFVTNVSSTTISGIT 399 Query: 309 THDY----------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------ 352 G+ L TP + G + L I V + + Sbjct: 400 PITTPEVELTPFFSGIALDVTPQIDGDGNVILHIHPSVINIKEQIKTIKISGSTLELPLA 459 Query: 353 ---VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++DT + SG +V+ GL+K + +L +PLL IP +G LF N + ++TE Sbjct: 460 RSDIRESDTVIMARSGDVVVIGGLMKSENIELISKVPLLGDIPFIGELFTNRAKSLKKTE 519 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 520 LVILLKPTVV 529 >gi|119899935|ref|YP_935148.1| type 4 fimbrial biogenesis protein [Azoarcus sp. BH72] gi|119672348|emb|CAL96262.1| probable type 4 fimbrial biogenesis protein [Azoarcus sp. BH72] Length = 707 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 108/268 (40%), Gaps = 33/268 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPS 227 +++N +++A QV ++ I E ++ + +G + GSS S Sbjct: 435 RLINEIDVA-PRQVLIEARIVEASKEFARDLGVRLGYGDAKDKSLGGGAKLGFGSSEFVS 493 Query: 228 KSFAAD-------------FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRT 271 + A G F+ G + + L ALE R Sbjct: 494 STTTAGTVDFQRNVGESATSGSGFLPTGFGSLNLTLFNSSLTRFLNLELAALESDGRGRV 553 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P + + AS G + Y SS+GAT+V + L P + GR+ L Sbjct: 554 VSSPRVLTANQVEASIEQGTEVPYLQA-SSSGATNVAFKKAVLSLKVKPQITPDGRLQLS 612 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 I+ P+ ++P + + V + +GGT+V+ G+ +++ ++ +P+L ++ Sbjct: 613 IEVNKDRPLFESAVLNVPPIETKNVKSEVLIDNGGTVVIGGIYEEEETSNEDRVPILGEL 672 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P++G LFR E+ + TP +V Sbjct: 673 PVVGFLFRTRSKISNRKELLVFITPKIV 700 >gi|332702379|ref|ZP_08422467.1| general secretion pathway protein D [Desulfovibrio africanus str. Walvis Bay] gi|332552528|gb|EGJ49572.1| general secretion pathway protein D [Desulfovibrio africanus str. Walvis Bay] Length = 677 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 74/348 (21%), Positives = 128/348 (36%), Gaps = 27/348 (7%) Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G+ + + L D L L + + G+V T S L+ Sbjct: 283 RGQGNVRVYKLEHADATELADVLNGLVGKTTGSAAAGGQAPKESGVV-TPVISSGVTILA 341 Query: 165 ETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----- 217 + + A+ + ++++ L+ QV ++ I EV + G + Sbjct: 342 DKATNSLVITAGADDFTLIEELLRDLD-TPRKQVLVEALIMEVSSTENVEFGSKLQGVVD 400 Query: 218 -------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR---FSFETVLHALERAT 267 + G S P+ + V G ++ ++ + ++ A + + Sbjct: 401 VGIGGREGVAGGFSNPAGLSESVLNPGTVFGIGAAAIPVTINGVTYTNLNALIAAGKINS 460 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPT 321 ++ P + + Q AS T Y+T +S T T D G +L TP Sbjct: 461 DFNIISTPQIMTLDNQEASITVAENRPYQTSQTSTLNDLNNIVTQFTYRDVGTILKLTPQ 520 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + G I L+I E SE +P R R +T V + G T+VL+GL+ Sbjct: 521 INEGGMIKLKIFQEFSEVDQAATGVSTLPVTRKRTTETAVVIREGQTVVLSGLIGKSATS 580 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDL 427 +PLL IP+LG LFR +T + + TP +V P +DL Sbjct: 581 SSSRVPLLGDIPLLGWLFRYDTREERKTNLLVFITPRVVDSPEKAQDL 628 >gi|262273882|ref|ZP_06051695.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886] gi|262222297|gb|EEY73609.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886] Length = 533 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 72/369 (19%), Positives = 137/369 (37%), Gaps = 36/369 (9%) Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 D + + L + G + G+ + + +E Sbjct: 152 VDYLQLQRSGVSLTSISTGAISTDASAGSGEDEKSDRTSVPTGGTVIETLTESQF---WA 208 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 ++E ++ G R+I S +A + + + ++ + +S+K + Q Sbjct: 209 QLERAVSGMIGTGDGRSIVISPQAGLITVKAYPNELREVKRFLDASQK-------RLKRQ 261 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSVKGVL 251 V L+ + EV Q G S G+S G + G +S + Sbjct: 262 VILEAKVLEVTLSDGYQQGVNWSNIGASIGSGGINISRPETKLAGDMISNVIGGQTNITI 321 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------- 301 +F +V++ L+ + L+ P +TA + Q A GG + T SS Sbjct: 322 TDGNFSSVMNFLDTQGDVNVLSSPRVTAANNQKAVIKVGGDEYFVTDISSSDTSGDNSDS 381 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--------- 352 +T G++L TP + + L + V + V + + Sbjct: 382 GPNIELTPFFSGILLDVTPQIDDDNGVLLHVHPAVVDVVTEEKTIQLGTSSEPYVLPLAK 441 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++D+ + SG +V+ GL+K +++ +PLL IP LG LFRN +++TE+ Sbjct: 442 TAIRESDSVIHARSGDVVVIGGLMKSSYEEVVSKVPLLGDIPGLGHLFRNVNRMKQKTEL 501 Query: 411 FIAATPFLV 419 I P +V Sbjct: 502 VILLQPSVV 510 >gi|116049822|ref|YP_791371.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14] gi|115585043|gb|ABJ11058.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14] Length = 776 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 95/508 (18%), Positives = 169/508 (33%), Gaps = 60/508 (11%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 Q+T + + P+ L + ANA +++ I + + I L++ + Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206 Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D++ V+ A+V+ S GK+ V+ + +L + L Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262 Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166 +L A+S + D L G + + ++ Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLRGERGQDGRGSGKRGLLVRADE 322 Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 L+ + ++ L++ Q+ ++ I E+ +I +G Q ++ Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381 Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 FA G L F ++ AL R + L+ Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441 Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327 P+L + Q A G ++T S SS T+V D GV L TP + Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501 Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ E+S R +TV G IVL GL++DD+ + Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSR 561 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP +G LFR+SR R + + + P +V+ A + Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472 R I + A+ + G I Sbjct: 607 HGRYRSIQLLRGAAGEPVRPLFEDAGAI 634 >gi|104781447|ref|YP_607945.1| type II secretion system protein XcpQ-2; signal peptide [Pseudomonas entomophila L48] gi|95110434|emb|CAK15142.1| putative type II secretion system protein XcpQ-2; putative signal peptide [Pseudomonas entomophila L48] Length = 787 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 100/267 (37%), Gaps = 25/267 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V++ L+ QV ++ I EV D + G Q A G Sbjct: 460 EVIDQLDQR-RAQVVVESLIVEVGEDDANEFGIQWQAGNLGKNGLFGGANLGGSGLGKGP 518 Query: 243 GDFSVK----------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 V GV + + AL+ L+ P L + ++AS Sbjct: 519 TSIDVLPPGLSVGVVDGTVKIPGVGAVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAAS 578 Query: 287 FTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 G + + S+ ++ + G+ L+ P + G + L + EVS Sbjct: 579 IFVGQTIPFVSGQYVTDGGGNSNNPFQTIQREEVGLRLNVRPQISEGGTVKLDVYQEVSS 638 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++ R DT++ L G +VL GLL+D Q EGIP LS +P +GALF Sbjct: 639 VDQRASSAAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYTQSNEGIPWLSSLPGVGALF 698 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMR 425 R+ R +T + + P++V+ Sbjct: 699 RSERRASNKTNLMVFLRPYIVRDANAG 725 >gi|296389736|ref|ZP_06879211.1| secretion protein XqhA [Pseudomonas aeruginosa PAb1] Length = 776 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 95/508 (18%), Positives = 169/508 (33%), Gaps = 60/508 (11%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 Q+T + + P+ L + ANA +++ I + + I L++ + Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206 Query: 65 -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D++ V+ A+V+ S GK+ V+ + +L + L Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262 Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166 +L A+S + D L G + + ++ Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLRGERGQDGRGSGKRGLLVRADE 322 Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 L+ + ++ L++ Q+ ++ I E+ +I +G Q ++ Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381 Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 FA G L F ++ AL R + L+ Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441 Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327 P+L + Q A G ++T S SS T+V D GV L TP + Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501 Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ E+S R +TV G IVL GL++DD+ + Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSR 561 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP +G LFR+SR R + + + P +V+ A + Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472 R I + A+ + G I Sbjct: 607 HGRYRSIQLLRGAAGEPVRPLFEDAGAI 634 >gi|241763436|ref|ZP_04761490.1| general secretion pathway protein D [Acidovorax delafieldii 2AN] gi|241367378|gb|EER61699.1| general secretion pathway protein D [Acidovorax delafieldii 2AN] Length = 697 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 9/235 (3%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ +I EV + G Q + + + G S G + G FS Sbjct: 420 PTQVLIEASIIEVTLGDDLKYGLQWAFSDTHRGGPGS--GLIGALPSASTGGFSYTLKDT 477 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GAT 305 + L+AL + I+ ++ P+L + Q+A+ G Q +T ++ T Sbjct: 478 LGNMRVTLNALAAKSLIKVISSPSLMVLDNQTATIAVGTQQPIRTGETTNLNTVGNSTTT 537 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 + D GV L P+V S + + I V++ ++ R+ + V + SG Sbjct: 538 TYQYKDTGVQLSVQPSVNSGDLVTMDISQAVTDVGDEDTVTGQRAFLQRQISSKVAVRSG 597 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +VL GL+KD+ + G+PLLS +P++G LF + + TE+ + TP +V+ Sbjct: 598 EAVVLGGLIKDNSSSGRSGVPLLSSLPVVGGLFGATTSSSGRTELLVVITPKVVR 652 >gi|304311962|ref|YP_003811560.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma proteobacterium HdN1] gi|301797695|emb|CBL45917.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma proteobacterium HdN1] Length = 710 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 106/272 (38%), Gaps = 32/272 (11%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------- 219 ++ L++ QV ++ I R ++ +++G + ++ Sbjct: 441 LDQLDVPVR-QVLIEARIVIARANVGEEMGVRWNVVQRGKVGEDFHNVFLSGKGTGVESN 499 Query: 220 -----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + ++ D+ + L ALE ++ Sbjct: 500 VESLTNTGKFTIGTNTVPLDFSVQGGDASSLALGLFDDKGLLDIELSALESEGRADVVST 559 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + Q A SG + Y+ SS+GAT+ + + + L TP + GRI + ++ Sbjct: 560 PKVLTADQQKAKVASGTEIPYQEA-SSSGATTTSFKEAVLSLEATPQITPDGRIIMDLKV 618 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 A ++P +T+V + +G T+VL G+ + + + P L +P+L Sbjct: 619 NQDSIGDIDTASNIPIIDTNSVETSVIVDNGQTVVLGGVFRSEEIKSVAKTPFLGDLPVL 678 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 G LFR + ++ +TE+ + TP +V V + Sbjct: 679 GRLFRKNVSSQAKTELLVFITPKIVTDVVAKQ 710 >gi|91212377|ref|YP_542363.1| type II secretion protein GspD [Escherichia coli UTI89] gi|218560038|ref|YP_002392951.1| general secretion pathway protein D precursor [Escherichia coli S88] gi|237706291|ref|ZP_04536772.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA] gi|91073951|gb|ABE08832.1| hypothetical type II secretion protein GspD [Escherichia coli UTI89] gi|218366807|emb|CAR04576.1| general secretion pathway protein D precursor [Escherichia coli S88] gi|226899331|gb|EEH85590.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA] gi|294493975|gb|ADE92731.1| general secretion pathway protein D [Escherichia coli IHE3034] gi|307625435|gb|ADN69739.1| general secretion pathway protein D precursor [Escherichia coli UM146] gi|323951515|gb|EGB47390.1| general secretion pathway protein D [Escherichia coli H252] Length = 686 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|146294651|ref|YP_001185075.1| general secretion pathway protein D [Shewanella putrefaciens CN-32] gi|145566341|gb|ABP77276.1| general secretion pathway protein D [Shewanella putrefaciens CN-32] Length = 703 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 61/281 (21%), Positives = 106/281 (37%), Gaps = 45/281 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394 Query: 236 -------GKFVSEGGDFSVKG------------------------VLDRFSFETVLHALE 264 G +++ V G + F ++ A+ Sbjct: 395 WQAQDKEGTYITNPSTGEVIGKNPDTQGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVS 454 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFT 319 T LA P++T + Q ASF G + + ++S +V + GV L Sbjct: 455 SDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 514 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L I+ EVS S+ R+ TTV SG +VL GL+ +++Q Sbjct: 515 PQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEEVQ 572 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P L IP+LG LF++S + + + I P +++ Sbjct: 573 ESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIR 613 >gi|324018098|gb|EGB87317.1| general secretion pathway protein D [Escherichia coli MS 117-3] Length = 686 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAGGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|186477814|ref|YP_001859284.1| general secretion pathway protein D [Burkholderia phymatum STM815] gi|184194273|gb|ACC72238.1| general secretion pathway protein D [Burkholderia phymatum STM815] Length = 787 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 101/269 (37%), Gaps = 34/269 (12%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 V++ L+I QV ++ I E+ + +G Q I + + A G ++ Sbjct: 406 VIDQLDIRRP-QVYIEALIVELNSNTNANLGIQWQIGSGNVFAGTNLATGSGNSIINLTA 464 Query: 244 DFS---------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + V + +L AL + L+ P L + Sbjct: 465 AAATGGIASALATQNLQQGLNVGWVHNLFGVNGLGALLQALSQTADANVLSTPNLITLDN 524 Query: 283 QSASFTSGGQHLYKTVSS--------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 Q A G +T S +T + D G+ LH P + G + L++ T Sbjct: 525 QEAKIVVGTNVPIQTGSYSNLTSSTATTAFNTFDRIDVGLTLHIKPQITDGGILKLQLYT 584 Query: 335 EVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 E S V G P + R +TV +G IVL GL++D+ Q +PLL Sbjct: 585 EDSAIVAGTTNVTTNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVTNSKVPLLGD 644 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP +G LFR+ R +T + + P ++ Sbjct: 645 IPWIGQLFRSENKTRAKTNLLVFLRPVII 673 >gi|191171834|ref|ZP_03033380.1| general secretion pathway protein GspD [Escherichia coli F11] gi|215488288|ref|YP_002330719.1| putative type II secretion protein [Escherichia coli O127:H6 str. E2348/69] gi|312968706|ref|ZP_07782915.1| general secretion pathway protein D [Escherichia coli 2362-75] gi|190907869|gb|EDV67462.1| general secretion pathway protein GspD [Escherichia coli F11] gi|215266360|emb|CAS10797.1| putative type II secretion protein [Escherichia coli O127:H6 str. E2348/69] gi|312286924|gb|EFR14835.1| general secretion pathway protein D [Escherichia coli 2362-75] gi|312947523|gb|ADR28350.1| general secretion pathway protein D precursor [Escherichia coli O83:H1 str. NRG 857C] gi|320195111|gb|EFW69740.1| General secretion pathway protein D [Escherichia coli WV_060327] Length = 686 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|323494567|ref|ZP_08099671.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546] gi|323311170|gb|EGA64330.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546] Length = 674 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 66/453 (14%), Positives = 150/453 (33%), Gaps = 83/453 (18%) Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98 I + + ++ ++ ++ V + ++ S M + + + Sbjct: 162 NIILITGRAAVVNRLADIIKRVDQAGDKEIEVVELANASAAEMVRIVEALNKTTEAKNTP 221 Query: 99 ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTVV 146 ++ +++ D + + + L L +A +R D V Sbjct: 222 AFLQPKLVADDRTNSILISGDPQVRQRLRKLIQQLDVEMASKGNNRVVYLRYAKAEDLVD 281 Query: 147 LHGMVRTIQDSQRA------------VELS---ETFLSQSGRNQYANSSSKKVMNLLNIA 191 + V ++++ V ++ ET ++ + V++ L+I Sbjct: 282 VLKGVSDNLQAEKSTGAKGSNTQRGEVMIAAHPETNALVVTAPPDIMNALQDVISQLDIR 341 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHS--------------------------------- 218 QV ++ I E+ +G Q Sbjct: 342 -RAQVLIEALIVEMAEGDGINLGVQWGSLETGAVIQYGNTGVPIGQVMVGLEEAKDTTTT 400 Query: 219 ------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 + D+ + G + + ++ A+ + L Sbjct: 401 ESYWNSTDNKWESRQTTEQGDYSTLASALSGAQGAALSVVMGDWTALISAVSTDSNSNIL 460 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + P++T + ASF G + T ++ +V + G+ L P + Sbjct: 461 SSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNS 520 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I+ EVS + A D+ + R+ +T+V + G IVL GL+ + + + +PL Sbjct: 521 VQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVEDGAMIVLGGLIDERALESESKVPL 579 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L IP LG LF+++ E+ + + P +++ Sbjct: 580 LGDIPYLGHLFKSTSTQVEKKNLMVFIKPTIIR 612 >gi|318607800|emb|CBY29298.1| type IV pilus biogenesis protein PilQ [Yersinia enterocolitica subsp. palearctica Y11] Length = 416 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 74/402 (18%), Positives = 140/402 (34%), Gaps = 47/402 (11%) Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL------IGHDGKQ 108 NK + L+ V++ AD + + ++G N+ L Sbjct: 27 NKPVSLEFQDVPASVVLQ--ALADYQQLN----LVIASDIG-TNLSLRLVDVPWDQALAI 79 Query: 109 MLNLDILIERDIAHL------EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 +L + L + + + R + V + L ++ ++ Sbjct: 80 VLRMSHLKVEREGAVMLVFTEQDSEERRLRAEQKTVPESLSNLSLALQYANAEEVADSLN 139 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAE 204 L+E + + K N L I QV L I Sbjct: 140 LAE----GGLLSPLGSVVVDKRTNTLLIRDTPASLALLKNWLAEMDLPLQQVQLAAHIVT 195 Query: 205 VRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + R+ L+++G + + + S +F + + F+V + R + Sbjct: 196 MSRENLQELGVRWGMGDTKPTSSLRMSNFNVNLPLPNSAISAGFNVARIGGRLLELEL-S 254 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 ALE+ I +A P L Q+AS G Y GAT++ + + + TP Sbjct: 255 ALEQENQIDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPK 314 Query: 322 VLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 +L G+I L ++ + P + + + ++ T + + G TIVL G+ + Sbjct: 315 ILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSS 374 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P+L+ IP LG LF+ + E+ I TP L+ Sbjct: 375 HGLNKVPILADIPWLGGLFKQDARQQSRRELVIFITPRLISA 416 >gi|170681179|ref|YP_001745227.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5] gi|170518897|gb|ACB17075.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5] Length = 686 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|167646061|ref|YP_001683724.1| general secretion pathway protein D [Caulobacter sp. K31] gi|167348491|gb|ABZ71226.1| general secretion pathway protein D [Caulobacter sp. K31] Length = 681 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 10/248 (4%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ + EV + + G Q I G +L+ Sbjct: 426 PLQVVIEAVVTEVSLNDALRYGSQWFIRSGDDRA----ILSRGKTADPASTFPGFTYLLN 481 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---SSSTGATSVTT 309 R S L AL T + L+ P L ++ Q+AS G Q T +SS+ +S+ Sbjct: 482 RSSIAATLDALSSVTHVEVLSAPNLMVLNNQTASLEVGDQVPVSTGSALNSSSVISSIEY 541 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTI 368 D GV+L TP V S G + L I EVS+ + D P+ VRK T++ + G T+ Sbjct: 542 RDTGVLLKITPRVNSGGLVLLDIAQEVSDVSPTLSSTIDSPTISVRKIATSIAVQDGQTV 601 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 L GL++D+ ++L+ G+P LS +P+LGAL + +RE TE+ + TP +++ D+ Sbjct: 602 ALGGLIRDNNKRLRNGVPFLSAVPVLGALAGSRDNSRERTELLVLLTPRVLR--NSGDIQ 659 Query: 429 RPDDHYSV 436 D Sbjct: 660 AVTDELRE 667 >gi|323960851|gb|EGB56471.1| general secretion pathway protein D [Escherichia coli H489] Length = 686 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|331684607|ref|ZP_08385199.1| general secretion pathway protein D [Escherichia coli H299] gi|331078222|gb|EGI49428.1| general secretion pathway protein D [Escherichia coli H299] Length = 686 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|331659244|ref|ZP_08360186.1| general secretion pathway protein D [Escherichia coli TA206] gi|331053826|gb|EGI25855.1| general secretion pathway protein D [Escherichia coli TA206] Length = 686 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|218691255|ref|YP_002399467.1| general secretion pathway protein D [Escherichia coli ED1a] gi|218428819|emb|CAR09618.1| general secretion pathway protein D precursor [Escherichia coli ED1a] Length = 686 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|332139655|ref|YP_004425393.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Alteromonas macleodii str. 'Deep ecotype'] gi|327549677|gb|AEA96395.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Alteromonas macleodii str. 'Deep ecotype'] Length = 582 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 110/313 (35%), Gaps = 44/313 (14%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + + ++ V + L + K +N + + QV L+ I EV + Q Sbjct: 250 SPTEGRQVVVSPQAGLVTIRALPSEIAVVKDFLNQSQESLQRQVVLEARIIEVTLNDGYQ 309 Query: 213 IGFQHSITGSSSGPSKSFAADFG------------------------GKFVSEGGDFSVK 248 G + S S +F G G +S Sbjct: 310 QGVRWDRIASGLTGSVNFGFSGGALASNFAANTAAGIDPAINAVNAIGNTISTDIGGVST 369 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------ 302 + R F+ V++ L+ ++ L+ P +T + Q A G + T S++ Sbjct: 370 LRISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSTT 429 Query: 303 -----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348 +T G+ L TP + G + L + V+E + Sbjct: 430 STENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLPL 489 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +R++DT + G +V+ GL++ + + PLL IP +G F+N + + Sbjct: 490 AQSNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSKR 549 Query: 409 EIFIAATPFLVKP 421 E+ I P +V+P Sbjct: 550 ELVILIRPSVVQP 562 >gi|107102654|ref|ZP_01366572.1| hypothetical protein PaerPA_01003719 [Pseudomonas aeruginosa PACS2] Length = 658 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 87/450 (19%), Positives = 157/450 (34%), Gaps = 48/450 (10%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 P L + ANA +I+ I + + + L++ V Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220 Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133 D V + K A VI + ++ + L +L A+ Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174 + + +D L + I + + + G + Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 ++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+ Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399 Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + + SF ++ AL T L+ P+L + Q Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459 Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 A G ++T S SS T+V D GV L TP + + L I+ E+ Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519 Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 S P R +T+ +G IV+ GL++DD+ Q + +PLL IP+L Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLL 579 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424 G LFR+++ + + + P +V+ A Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609 >gi|308051183|ref|YP_003914749.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM 9799] gi|307633373|gb|ADN77675.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM 9799] Length = 551 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 108/288 (37%), Gaps = 22/288 (7%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 D ++ + L + L + + + E QV L+ I EV Q G Sbjct: 242 DGRQVLTLPQAGLVSVKAYPHELREVESFLGQAQQNLERQVVLEARILEVVLSDGYQQGI 301 Query: 216 QHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 S S G S + V++ F V+ L+ + TL Sbjct: 302 NWSEVTGSIGSTDISFGTSEGQFSNAVTDVIGGITGISFTGTDFSAVVTLLDTQGDVDTL 361 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHDYGVVLHFTPTV 322 + P +TAI+ Q A G + T S +T +T G+ L TP + Sbjct: 362 SSPRVTAINNQKAVIKVGTDEYFVTDISATTVASDTPITTPDVELTPFFSGIALDVTPQI 421 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGL 373 G + L + V++ +R++DT + SG +V+ GL Sbjct: 422 GQSGEVLLHVHPSVTDITEQTKTITALDTTLELPLAQSQIRESDTMIRAHSGDVVVIGGL 481 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +K +Q++ +PLL +IP LG LF N +TE+ I P +V+P Sbjct: 482 MKTLQEQVESKVPLLGQIPFLGELFTNRSQRNVKTELVILLRPTIVEP 529 >gi|238025716|ref|YP_002909947.1| general secretory pathway protein D [Burkholderia glumae BGR1] gi|237874910|gb|ACR27243.1| General secretory pathway protein D [Burkholderia glumae BGR1] Length = 765 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 66/377 (17%), Positives = 122/377 (32%), Gaps = 77/377 (20%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ I E+ + +G Q + Sbjct: 362 IQADAATNSLIITASDPVYRNLRAVVDQLDER-RAQVYIEALIVELNSNTSANLGIQWQV 420 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS----------------------------VKGVL 251 ++ S + G + G + +K + Sbjct: 421 ANNALYAGSSLGTNVSGLGNTITGLTAAAAAGSAGGANGGAAAAASLTPGLNIGWLKNMF 480 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTG 303 +L A ++ L+ P L + + A G + +SS Sbjct: 481 GITGLGALLQAFSGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIATGSYSNLTSGNSSNA 540 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTV 360 + D G+ LH P + G + L+I TE S V + +P++ R +TV Sbjct: 541 FNTFDRQDVGLTLHVKPQITEGGILKLQIYTEDSAVVPSTTSSTAVGVPTFSKRSIQSTV 600 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV- 419 +G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 601 LCDNGEIIVLGGLMQDNYQVGNNKVPLLGDIPWIGQLFRSEGKQRQKTNLMVFLRPVILT 660 Query: 420 ----------------------------------KPVAMRDLSRPDDHYSVEDDAKAFFF 445 PV PD+ + + F Sbjct: 661 DHATTQAITANRYDYIQGVQGAYRTDNNLIRDKDDPVTPPMPLGPDEGVAPAAN--LFDL 718 Query: 446 NRVNKIYGPKEASEVEG 462 R+ + G G Sbjct: 719 TRMTRRPGYPPVPASAG 735 >gi|84394142|ref|ZP_00992875.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01] gi|84375244|gb|EAP92158.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01] Length = 492 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 112/310 (36%), Gaps = 34/310 (10%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 ++E ++ G +++ + +A + + + + S+K + Q Sbjct: 166 QLEAAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIREVREFLGISQKRLQR-------Q 218 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----V 250 V L+ I EV Q G S S G S+ G Sbjct: 219 VILEAKIMEVTLSDGYQQGISWSNLSKSIGSGGVVIDRPASTLPPLDAISSLLGGQTNVT 278 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302 + SFE VL ++ + L+ P +TA + Q A G Y T SS+ Sbjct: 279 ISDGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTDLSSSVGSGDDAN 338 Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMPS- 350 +T G+ L TP + G + L + V +P Sbjct: 339 VAPEVELTPFFSGISLDVTPQIDDKGSVFLHVHPAVIEVEEEVKELNLGSTTGIVQLPLA 398 Query: 351 -YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++D+ + G +V+ GL+K + + +P L IP LG LFRN+ ++TE Sbjct: 399 KSSIRESDSVIRAKDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTE 458 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 459 LVILLKPTIV 468 >gi|319761508|ref|YP_004125445.1| general secretion pathway protein d [Alicycliphilus denitrificans BC] gi|330823377|ref|YP_004386680.1| general secretion pathway protein D [Alicycliphilus denitrificans K601] gi|317116069|gb|ADU98557.1| general secretion pathway protein D [Alicycliphilus denitrificans BC] gi|329308749|gb|AEB83164.1| general secretion pathway protein D [Alicycliphilus denitrificans K601] Length = 777 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 60/314 (19%), Positives = 110/314 (35%), Gaps = 36/314 (11%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G + T + + V++ L+ QV ++ I EV Sbjct: 388 SGTDNQPSTGGQIQADPTTNSLIISAPEPQYRQLRAVIDKLD-GKRAQVLIESLIVEVSA 446 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------GDFSVKGVLDRF 254 + + + G Q + G + + + Sbjct: 447 NKVAEFGIQWQTAFGNYGNGAVGVIGTNSGVAGGNIIDLAVAAATGNYASLTSSAIGNGM 506 Query: 255 S------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + + + LE L+ P L + + A G + T S + Sbjct: 507 NVAIAPRINGKYYLGALANFLENTGDANVLSTPNLLTLDNEEAQIIIGNNVPFPTGSYAN 566 Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYR 352 T+V D G++L PT+ G + L + EVS+ + PS Sbjct: 567 TGGNGGAVNPFTTVERKDVGLMLRVRPTINENGTVKLTLYQEVSKVNESTLTNVNGPSTS 626 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R ++TV + G IVL GLL+D ++ +P++ +P+LGALFRN +R++T + + Sbjct: 627 KRSIESTVLVDDGSVIVLGGLLEDSYSLNQDKVPVMGDLPVLGALFRNENRSRKKTNLMV 686 Query: 413 AATPFLVKPVAMRD 426 P +++ A D Sbjct: 687 FLRPMVIRDNATSD 700 >gi|218778338|ref|YP_002429656.1| type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01] gi|218759722|gb|ACL02188.1| Type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01] Length = 844 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 52/293 (17%), Positives = 104/293 (35%), Gaps = 29/293 (9%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V++ V++ + + V L + QV ++ + E + Sbjct: 551 VKSPDRGSVDVDIRTNTIIMIDIKDRIKRARDIVSRLDRVTA--QVQIEARVVEAQTTFS 608 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------------------------DFS 246 + IG + + GG +FS Sbjct: 609 RSIGLAWNGESGIQPGDSREGVGPQRGYDVLGGTYGYNWSVNYPTETDDYGNNTFGFNFS 668 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 L S L+A E I+ ++ P + + + A+ G G T Sbjct: 669 RLLGLTPLSLNATLNAAESRGEIKIVSSPKIRTLDNKPATIK-QGIDYPIKQFDGDGNTV 727 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + + L TP V R+ +++ E ++ ++ S+ ++ DT + + G Sbjct: 728 IVYKAVDLQLEVTPHVTQDRRVSMKMTVEKNDVGAVISEEQ--SFNTKEVDTELLVNDGD 785 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T+V+ G++K + +G P L +P+LG LF++S + E E+ + TP +V Sbjct: 786 TVVIGGIIKTTFRDDVDGWPGLIDVPVLGWLFKDSTKSEEREELLVFITPTIV 838 >gi|218890695|ref|YP_002439559.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58] gi|254236075|ref|ZP_04929398.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719] gi|254241802|ref|ZP_04935124.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192] gi|126168006|gb|EAZ53517.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719] gi|126195180|gb|EAZ59243.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192] gi|218770918|emb|CAW26683.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58] Length = 658 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 87/450 (19%), Positives = 157/450 (34%), Gaps = 48/450 (10%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 P L + ANA +I+ I + + + L++ V Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220 Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133 D V + K A VI + ++ + L +L A+ Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174 + + +D L + I + + + G + Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 ++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+ Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399 Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + + SF ++ AL T L+ P+L + Q Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459 Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 A G ++T S SS T+V D GV L TP + + L I+ E+ Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519 Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 S P R +T+ +G IV+ GL++DD+ Q + +PLL IP+L Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLL 579 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424 G LFR+++ + + + P +V+ A Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609 >gi|113968501|ref|YP_732294.1| general secretion pathway protein D [Shewanella sp. MR-4] gi|114045664|ref|YP_736214.1| general secretion pathway protein D [Shewanella sp. MR-7] gi|113883185|gb|ABI37237.1| general secretion pathway protein D [Shewanella sp. MR-4] gi|113887106|gb|ABI41157.1| general secretion pathway protein D [Shewanella sp. MR-7] Length = 700 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 59/279 (21%), Positives = 103/279 (36%), Gaps = 43/279 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394 Query: 236 -----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + G + + F ++ A+ Sbjct: 395 WQAQGEDGTTVCTENGTCTENPDSRGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVSAD 454 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPT 321 T LA P++T + Q ASF G + + ++S +V + GV L P Sbjct: 455 TNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVVPQ 514 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + L I+ EVS S+ R+ TTV SG +VL GL+ +++Q+ Sbjct: 515 INEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEEVQES 572 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +P L IP+LG LF++S + + + I P +++ Sbjct: 573 VQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIR 611 >gi|153947341|ref|YP_001402915.1| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 31758] gi|152958836|gb|ABS46297.1| protein transporter HofQ [Yersinia pseudotuberculosis IP 31758] Length = 458 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85 P E A +++ + +++++ + + + + +V P +A ++ Sbjct: 71 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 126 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 L + G ++ + ++ A +TL A++ + + Sbjct: 127 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 182 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L G + + S A + + T L + A + + L + QV L I + Sbjct: 183 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 238 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262 + L+++G + G G + DF SV + E L A Sbjct: 239 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 297 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE+ + +A P L Q+AS G Y A ++ + + + TP + Sbjct: 298 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 357 Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L G+I L ++ + P I + +M ++ T V + G TIVL G+ + +Q Sbjct: 358 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 417 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 418 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 458 >gi|323188610|gb|EFZ73895.1| general secretion pathway protein D [Escherichia coli RN587/1] Length = 686 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|198283019|ref|YP_002219340.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665348|ref|YP_002425223.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247540|gb|ACH83133.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517561|gb|ACK78147.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 784 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 97/291 (33%), Gaps = 44/291 (15%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------------------- 224 QV ++ I +V + +G T +S Sbjct: 495 RPVPQVLIEARIVQVTTSAAQSLGVNWGGTYTSGGGGGIVNLSGTGATGVTSTQGGAYPM 554 Query: 225 -----------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 S A F++ L AL+ Sbjct: 555 SGTTTTTGTGFTTPALVNLVPSTAGTALASMNPASLGFALGTAAGNRILNLQLQALQADN 614 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + ++ P + + A G + Y+ +SS GAT+V+ + L TP + G+ Sbjct: 615 RAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATAVSFKKAVLSLDVTPHISPNGK 673 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I L + +P ++ T + + +G T+V+ G+ D Q + G+PL Sbjct: 674 ITLDVDARNDQPNYAQAMPSGIPINTQQVKTKLLVNNGQTVVIGGIYTDSTTQNETGVPL 733 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 L IP+LG LF++ + +TE+ + TP +V + L + Sbjct: 734 LRDIPLLGWLFKSHINSVAKTELLVFLTPKVVGGESPGGLGVASAGSNPGT 784 >gi|15598301|ref|NP_251795.1| general secretion pathway protein D [Pseudomonas aeruginosa PAO1] gi|544439|sp|P35818|GSPD_PSEAE RecName: Full=General secretion pathway protein D; Flags: Precursor gi|9949215|gb|AAG06493.1|AE004734_11 general secretion pathway protein D [Pseudomonas aeruginosa PAO1] gi|431185|emb|CAA48582.1| XcpQ [Pseudomonas aeruginosa PAO1] Length = 658 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 87/450 (19%), Positives = 157/450 (34%), Gaps = 48/450 (10%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 P L + ANA +I+ I + + + L++ V Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220 Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133 D V + K A VI + ++ + L +L A+ Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174 + + +D L + I + + + G + Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 ++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+ Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399 Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + + SF ++ AL T L+ P+L + Q Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459 Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 A G ++T S SS T+V D GV L TP + + L I+ E+ Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519 Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 S P R +T+ +G IV+ GL++DD+ Q + +PLL IP+L Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLL 579 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424 G LFR+++ + + + P +V+ A Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609 >gi|90022332|ref|YP_528159.1| peptidase M41, FtsH [Saccharophagus degradans 2-40] gi|89951932|gb|ABD81947.1| type II and III secretion system protein [Saccharophagus degradans 2-40] Length = 727 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 60/304 (19%), Positives = 113/304 (37%), Gaps = 42/304 (13%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + +A+ T + +++++ ++I QV ++ I D K++G Sbjct: 419 SERGQAIVDERTNSIILTDTEEKIDDFRRLVDRIDIPVR-QVMIEARIVIANSDFRKELG 477 Query: 215 FQ---------------HSITGSSSGPSKSFAADFGGKFV-------------------- 239 + +TG +G + + + FV Sbjct: 478 VRMAGDAVETSVSGDTKFEMTGRLTGLTAADGSGPEALFVDTDGDGVTDDERSLLDSSLV 537 Query: 240 -----SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + G F+ + F L ALE + +++P + Q AS SG + Sbjct: 538 DLGVFNPAGAFTWNVISSNFLLGMELSALENSGYAEIVSQPKVITGDKQKASIESGTEIP 597 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 Y+ S+S G T + + + L TP + R+ + + +P + Sbjct: 598 YQEESASGGTT-TSFKEAVLKLEVTPQITPDNRVIMDLVINQDSISSIDANSGIPVIDIT 656 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T V + G TIVL G+ + + +PLL IP +G LFRN + ++ EI I Sbjct: 657 QLETQVLVADGETIVLGGIYTTNTFTGETKVPLLGDIPFVGKLFRNDFKSEDKREILIFI 716 Query: 415 TPFL 418 TP + Sbjct: 717 TPRI 720 >gi|124385937|ref|YP_001027735.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] gi|124293957|gb|ABN03226.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] Length = 616 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 189 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 247 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 248 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 304 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 305 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 364 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 365 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 424 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 425 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 484 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 485 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 541 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 542 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 601 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 602 SELVVYITPTVV 613 >gi|292900933|ref|YP_003540302.1| protein transport protein [Erwinia amylovora ATCC 49946] gi|291200781|emb|CBJ47915.1| protein transport protein [Erwinia amylovora ATCC 49946] Length = 406 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 76/421 (18%), Positives = 156/421 (37%), Gaps = 31/421 (7%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV--LV 71 + L S + A+ P + A + + +++++ + + + + ++DV Sbjct: 1 MALISPLAA-AQPPLTLAFDNAPVAQVLQALADYQQLNLVVAPGVEGHLSLRLKDVPWRQ 59 Query: 72 SDPTKADVVVHS----PRTMYLFGK---NVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 + S + +F Q + + ++ML L I + Sbjct: 60 ALQLVIKTGKLSMEQQGNVLMVFPASWQQEEQRKAAVQREEQEKMLPLFDRILTLVHADA 119 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 ++ + R+ ++ L ++ L++T + Sbjct: 120 ASVNTSLQSERARLMSARGSITLDSRTNSLLLRDTEKALAQT---------------EHW 164 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKFVSE 241 + L++ +Q+ L I + + L+++G ++G + + Sbjct: 165 VRQLDVPL-EQIELAAQIVTMSEESLRELGVTWGMSGEAQVADALRTSQLRVDLASGRPA 223 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G LD E L ALE +A P L Q+AS G + Y+ + + Sbjct: 224 GVAGLTLAKLDGRLLELELSALESEHQADIIASPRLFTSHQQTASIKQGTEIPYEVSTGN 283 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 +G+T++ + + + TP V S GRI L I V + ++ + ++ DT Sbjct: 284 SGSTTMEFKEAMLAMEVTPLVQSNGRILLKLHISQNVPGRNMRSGENEVLTIDKQEIDTQ 343 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V L G T+ L G+ + +P L IP+LG+LFR+ ++ E+ I TP LV Sbjct: 344 VMLKDGQTLALGGIFQQQSATGSTRVPWLGDIPLLGSLFRHDVRQQKRRELVIFITPRLV 403 Query: 420 K 420 + Sbjct: 404 R 404 >gi|313108415|ref|ZP_07794431.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016] gi|310880933|gb|EFQ39527.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016] Length = 658 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 87/450 (19%), Positives = 156/450 (34%), Gaps = 48/450 (10%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 P L + ANA +I+ I + + + L++ V Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220 Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133 D V + K A VI + ++ + L +L A+ Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174 + + +D L + I + + + G + Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 ++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+ Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399 Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + + SF ++ AL T L+ P+L + Q Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459 Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 A G ++T S SS T+V D GV L TP + + L I+ E+ Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519 Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 S P R +T+ +G IV+ GL++DD+ Q + +PLL IP L Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFL 579 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424 G LFR+++ + + + P +V+ A Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609 >gi|306816695|ref|ZP_07450827.1| general secretion pathway protein D precursor [Escherichia coli NC101] gi|305850260|gb|EFM50719.1| general secretion pathway protein D precursor [Escherichia coli NC101] Length = 686 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGSVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|307731211|ref|YP_003908435.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003] gi|307585746|gb|ADN59144.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003] Length = 613 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 77/446 (17%), Positives = 148/446 (33%), Gaps = 47/446 (10%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 + + P V P + + A + K IS+ + + V Sbjct: 177 VAAPASALEGPPVPLPPLTRLSGAPKVPADATLAADDKPISLNFQRAELGAVLNAFAQ-F 235 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRR 129 A V ++ L A L+ G M + +++ IA L R+ Sbjct: 236 TGLNIVASERVRGSVSLRLDKVPWRVAFDTLLDVHGLAMERHGNVVWVAPIADLAARERQ 295 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTI-----QDSQRAVELSETFLSQSGRNQYANSSSKKV 184 E + L + ++ L +Q ++ ++ Sbjct: 296 RF-------EAHARAADLEPLASRTFQLHYARAEDVRRLLTGSGNQRVLSKRGAVTADPR 348 Query: 185 MNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 NLL + QV ++ I E + +G + S+ G+S+ Sbjct: 349 TNLLFVTDLEGRLAQIAALLDSVDRPTRQVLIEARIVEGEHGFSRNLGVRLSMAGTSADG 408 Query: 227 SKSFAAD------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S + F + ++ L ALE + ++ Sbjct: 409 STRGLSGGKDGLVYDLSARPIAGFDAATAGLTLFAAGATRLLNIELSALEAEGRGQVVSS 468 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + A G + Y+ G + V + L P ++ GR+ L + Sbjct: 469 PRVVTADRMKAVVEQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL-- 525 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +V++ +G P+ + T VE+ GGT+ + G+ D + +P+L KIP+L Sbjct: 526 DVAKDSVGEQTDAGPAINTKHVQTRVEVEDGGTVSIGGIYATDGRDDVTRVPVLGKIPVL 585 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 GALFR+ + +E+ + TP +V+ Sbjct: 586 GALFRHRAHRDQRSELAVFITPRVVQ 611 >gi|326318805|ref|YP_004236477.1| general secretion pathway protein D [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375641|gb|ADX47910.1| general secretion pathway protein D [Acidovorax avenae subsp. avenae ATCC 19860] Length = 823 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 20/248 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------GPSKSFAADFGGKFVSE 241 QV ++ +I EV D Q G Q + + S S ++ Sbjct: 530 PTQVLIEASIVEVTLDDSLQYGLQWAFSNSGPSNLNGAGQLLTNAPGSNSSIGASIPTPT 589 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299 FS + VL+AL ++ ++ P+L + +A + G Q KT + Sbjct: 590 TSGFSYALSNSLGNVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTGTLT 649 Query: 300 -----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYR 352 ++ A ++ D GV L TP+V + + ++I V++ N P ++ Sbjct: 650 SAISGGTSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGNVSLQPVFQ 709 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ + V + SG IVL GL++D K GIPLL IP++G+LF N+ TE+ + Sbjct: 710 QRQITSKVAVRSGEAIVLGGLIRDTNNSSKSGIPLLQDIPVVGSLFSNNGKTGTRTELLV 769 Query: 413 AATPFLVK 420 TP +V+ Sbjct: 770 VITPKVVR 777 >gi|116051101|ref|YP_790068.1| general secretion pathway protein D [Pseudomonas aeruginosa UCBPP-PA14] gi|115586322|gb|ABJ12337.1| general secretion pathway protein D [Pseudomonas aeruginosa UCBPP-PA14] Length = 658 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 87/450 (19%), Positives = 156/450 (34%), Gaps = 48/450 (10%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 P L + ANA +I+ I + + + L++ V Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220 Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133 D V + K A VI + ++ + L +L A+ Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174 + + +D L + I + + + G + Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 ++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+ Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399 Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + + SF ++ AL T L+ P+L + Q Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459 Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 A G ++T S SS T+V D GV L TP + + L I+ E+ Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519 Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 S P R +T+ +G IV+ GL++DD+ Q + +PLL IP L Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFL 579 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424 G LFR+++ + + + P +V+ A Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609 >gi|117620233|ref|YP_854918.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561640|gb|ABK38588.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 557 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 112/288 (38%), Gaps = 35/288 (12%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFAADFGGKFVS 240 +N + QV L+ I EV + + G S + G + + + Sbjct: 268 LNQSESHLKRQVVLEARILEVALNEGYEQGVDWSGLSASWDGNKGITGGGSLTPSTIANT 327 Query: 241 EGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 FS G F +F ++ L+ + TL+ P +TA + Q A G + Sbjct: 328 PNQIFSALGGGAGFKISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYF 387 Query: 296 KTVSSS------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 T +S+ T +T G+ L TP + G++ L I V + Sbjct: 388 VTNASTTTTTSGTSAPIVTPNVELTPFFSGIALDVTPQIDEEGKVLLHIHPSVIDTEEQK 447 Query: 344 NAGDM----PSY------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 D+ P +R++DT V+ +G IV+ GL+K D Q++ +PLL IP Sbjct: 448 KTIDVGTADPLILPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPW 507 Query: 394 LGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPD---DHYSVE 437 +G F N R + ++ E+ I P +V K +L R D + Sbjct: 508 VGEAFTNRRESTKKVELVILLKPTVVEKDTWQNELQRSSELLDKWYPP 555 >gi|226951776|ref|ZP_03822240.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244] gi|226837491|gb|EEH69874.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244] Length = 735 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 27/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L+ QV ++ I EV +Q+G Q + +SG ++ G Sbjct: 374 ESAIQQLDTR-RQQVLIEAAIIEVVGGDAEQLGVQWVLGDLNSGVGLVNFSNLGSGLSKI 432 Query: 242 GGDFSVKG------------VLDRFSF-------ETVLHALERATAIRTLAEPTLTAISG 282 + G + +F ++ AL+ T L+ P++ + Sbjct: 433 AAGYLTGGAVGAAGAFGDGASIGLGNFENPRRAYGALIQALKANTKSNFLSTPSIVTMDN 492 Query: 283 QSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + A G + T S + T+V D G+ L P + G I L ++ E Sbjct: 493 EEAYIVVGQNVPFVTGSVATQGNSTVNPYTTVERKDVGITLKVVPHIGEGGSIRLEVEQE 552 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 VS R T+V G T++L GL+ DD ++ IP+L IP LG Sbjct: 553 VSNVQPNRGQATDLVTSKRAIKTSVLADHGQTVILGGLISDDTNLTRQSIPVLGDIPYLG 612 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LFR + ++ + + P +V Sbjct: 613 RLFRADTRSNDKRNLLVFIHPTIV 636 >gi|326423839|ref|NP_760349.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6] gi|319999208|gb|AAO09876.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6] Length = 548 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 66/304 (21%), Positives = 113/304 (37%), Gaps = 34/304 (11%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 ++ G +++ + +A ++ R ++ + + + QV L+ I Sbjct: 227 GLIGSGKGQSVVVTPQAGVITVRAFPDEIREV------RQFLGISQERMQRQVILEAKIL 280 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-------DFSVKGVLDRFSF 256 EV Q G S +S G S S + G V G + SF Sbjct: 281 EVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLPGLDAIGSLLGGQTNVTISDGSF 340 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306 E VL + + L+ P +TA + Q A G Y T SS + Sbjct: 341 EAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQYYVTALSSNVGNDDKSKAVPEVT 400 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355 +T G+ L TP + G + L + V E ++ +R+ Sbjct: 401 LTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETKQLNLGGDFQNVTLPLAKSSIRE 460 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +D+ + G +V+ GL+K + + +P L IP LG LFRN+ ++TE+ I Sbjct: 461 SDSVIRARDGDVVVIGGLMKSNTIERVSKVPFLGDIPALGHLFRNTSNLTQKTELVILLK 520 Query: 416 PFLV 419 P +V Sbjct: 521 PTVV 524 >gi|224373395|ref|YP_002607767.1| type II and III secretion system protein [Nautilia profundicola AmH] gi|223589657|gb|ACM93393.1| type II and III secretion system protein [Nautilia profundicola AmH] Length = 449 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 102/286 (35%), Gaps = 37/286 (12%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G+V D + E+ + +N LN +V + V I V Sbjct: 164 SGLVTVTGDRNQIEEI------------------DRYINDLNNRLHKEVLIDVKIYSVTL 205 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + G S S S A S + F+ +L+ L + Sbjct: 206 SSSHKTGIDWSQ------LSLSLADKSVPITASNIIGANAVFKEATFNVGGLLNFLAQNG 259 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--------VTTHDYGVVLHFT 319 + +++ P + ++ Q A G YK S T + + + GV+L T Sbjct: 260 NVNSISNPKIVTLNNQKALIKVGDTIYYKYASEITTDNNGNPTTEYTIDSKFVGVLLDIT 319 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLL 374 P + G I L I +S ++ P + + V+L T+VL GL+ Sbjct: 320 PQISDNGEIILSINPRISAFKDATQLSNVNRDMPPDTQDNTMISVVKLKDNDTLVLGGLI 379 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 DD Q G+P+L +IPI+ LF + + E+ TP ++ Sbjct: 380 TDDKQLKVNGVPVLKEIPIIKYLFSSREEITTKKELVFVITPHIID 425 >gi|161523474|ref|YP_001578486.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616] gi|160340903|gb|ABX13989.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616] Length = 573 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 34/298 (11%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196 +Q L Q ++ +++ NLL + QV Sbjct: 248 ARAQDVQRLLAGATGQRLLSKRGAAAADARTNLLFVTDLAPRIAQIADLIAALDRPSRQV 307 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGG 243 ++ I E + + +G + ++ + AA F + Sbjct: 308 RIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAGASPAGARTALDLAARPLAGFDAATA 367 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F++ + L ALE + ++ P + A G + Y+ G Sbjct: 368 GFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ-AKVGNG 426 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 T V + L P + GR+ L + +V++ +G P+ + T VE+ Sbjct: 427 VTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVD 484 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 485 DGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPTIVSA 542 >gi|294649022|ref|ZP_06726469.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC 19194] gi|292825090|gb|EFF83846.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC 19194] Length = 735 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 27/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L+ QV ++ I EV +Q+G Q + +SG ++ G Sbjct: 374 ESAIQQLDTR-RQQVLIEAAIIEVVGGDAEQLGVQWVLGDLNSGVGLVNFSNLGSGLSKI 432 Query: 242 GGDFSVKG------------VLDRFSF-------ETVLHALERATAIRTLAEPTLTAISG 282 + G + +F ++ AL+ T L+ P++ + Sbjct: 433 AAGYLTGGAVGAAGAFGDGASIGLGNFENPRRAYGALIQALKANTKSNFLSTPSIVTMDN 492 Query: 283 QSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + A G + T S + T+V D G+ L P + G I L ++ E Sbjct: 493 EEAYIVVGQNVPFVTGSVATQGNSTVNPYTTVERKDVGITLKVVPHIGEGGSIRLEVEQE 552 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 VS R T+V G T++L GL+ DD ++ IP+L IP LG Sbjct: 553 VSNVQPNRGQATDLVTSKRAIKTSVLADHGQTVILGGLISDDTNLTRQSIPVLGDIPYLG 612 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LFR + ++ + + P +V Sbjct: 613 RLFRADTRSNDKRNLLVFIHPTIV 636 >gi|290968265|ref|ZP_06559808.1| bacterial type II and III secretion system protein [Megasphaera genomosp. type_1 str. 28L] gi|290781747|gb|EFD94332.1| bacterial type II and III secretion system protein [Megasphaera genomosp. type_1 str. 28L] Length = 394 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 77/443 (17%), Positives = 156/443 (35%), Gaps = 58/443 (13%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 +T +++I + + + + + A I + K +++ ++ + + + Sbjct: 1 MKTCVRVLAIGIAAISWYMPVSALQVRVSDAPIRTVLEGLAKSGNLNLIIDDSVQGNMTL 60 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 + V + + + S Y G +G GKQ + + Sbjct: 61 HLDHVTPAQA--VEAIAASQNLFYDTGSPIGIITAGRNEEKGKQYYTWQLKNTTP-EAVI 117 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 ++ + + ++ S+TVV+ T +++Q +L + ++ Sbjct: 118 RAIQAVVPAAAVKSYADSNTVVVG---STKREAQLVNKLVQQLDKKTA------------ 162 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 QV + V I + R L + G + SG F Sbjct: 163 ----------QVDVAVRIVSLDRKALHKRGIEWDWQPFGSGSQTVF-------------- 198 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 S+ + AL LA P + A +G++A G + + G Sbjct: 199 ----------SWLGQIQALSEQGKAEILASPHIMASNGKAAQILIGDRVPVLKEHLANGE 248 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 S++ + GV L++TP + G + I+ EVS PV V R+A T V + Sbjct: 249 KTASISYEEAGVKLNYTPYIHQDGSVTASIEAEVSTPVW-VPEMKAYRISTRRAKTIVRM 307 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 T+V+ GL+ + + +PLL IP++G LF++ +ETE+ I +PV Sbjct: 308 KPDKTLVIGGLIGKEEMEHFRKVPLLGDIPLVGKLFQSRYKTAKETEVVIMLQA---RPV 364 Query: 423 AMRDLSRPDDHYSVEDDAKAFFF 445 + + + + Sbjct: 365 QDEEQNTVATELFPPIEDEKCLL 387 >gi|255320222|ref|ZP_05361407.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82] gi|255302661|gb|EET81893.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82] Length = 726 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 104/275 (37%), Gaps = 33/275 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 ++++LL++A + QV ++ I D K++G + I + S Sbjct: 453 RMIDLLDVAVK-QVMVEARIVRASTDFTKEMGVKWGILSQGITRNNSLLVGGSETTLWNL 511 Query: 236 ---------------------GKFVSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLA 273 G S + + L F + L AL+ ++ Sbjct: 512 RDPDDDGKYTIERPQNLNVDLGVTASGASRIAFGLISLSDFMLDLELSALQADGYGEVIS 571 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 P + Q A SG Q Y++ ++ D + L+ TP++ G+I + Sbjct: 572 TPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQML 631 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + S+ + + +T V + +G T+VL G+ + + + + +P+L + Sbjct: 632 LNIT-SDTPGNPTPTGQIAINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGDL 690 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P +G LFR + + E+ I TP +V A + Sbjct: 691 PGVGRLFRRDAKSNNKRELLIFVTPRIVNDSATGN 725 >gi|114568932|ref|YP_755612.1| general secretion pathway protein D [Maricaulis maris MCS10] gi|114339394|gb|ABI64674.1| general secretion pathway protein D [Maricaulis maris MCS10] Length = 650 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 82/473 (17%), Positives = 165/473 (34%), Gaps = 54/473 (11%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 + + + + N V+ I + +++ L++ + V++ +V Sbjct: 138 ALAVVRPLIGAQGSVNATETGNVLVMVDYAENIARLRQVIRDLDRDTSVVEMVELTNVSA 197 Query: 72 SD-PTKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 D + S T++ A+ ++ + ++ I + R + + Sbjct: 198 GDMTRILQQMRTSSTAGEDETIFNVAIAPIPASNTVLLRGNRDAVDRMIALVRRVDSVSQ 257 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL------SETFLSQSGRNQYANS 179 + R F + +L +V T+ + + T + Sbjct: 258 SNRSFRVIYLSHADGEHLLPILQQVVDTLVAGEGTTRAPSVSHHAPTNALVINADPDVQR 317 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------- 231 + V+ L+I QV ++ I E+ +++G Q + G + Sbjct: 318 QLELVIRQLDIRRP-QVLVEGIIVEMSDSTARELGVQMLLAGGEGDTPLAMTRFSSNNPD 376 Query: 232 ------------------------ADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERA 266 A + GG G + F VL+A+E Sbjct: 377 LLALTGAATSPGDDDSDLNVSLRDAAINSLLGASGGTLGFGGQNGSGNLFGLVLNAVESD 436 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPT 321 LA P++ A+ + A F SG + T +++ +V + GV L P Sbjct: 437 VNSNVLATPSIMALDNEEAYFLSGQEIPVTTGEALGSNNTNPFRTVDREEVGVKLTVLPQ 496 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + L I EVS VNAG R+ TTV +G IVL GL++ + + Sbjct: 497 ITEGNTVRLHIVQEVSSVAGAVNAGSSDLITNKREISTTVLADNGEIIVLGGLIQQEDEI 556 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 ++G+P L ++P +G LFR+ T + + P +++ + D+ D+ Sbjct: 557 SEDGVPGLRRLPGVGRLFRSEGSTTRRTNLMVFIRPTIIR--SEADMQALTDN 607 >gi|212633091|ref|YP_002309616.1| type II and III secretion system protein:NolW-like protein [Shewanella piezotolerans WP3] gi|212554575|gb|ACJ27029.1| Type II and III secretion system protein:NolW-like protein [Shewanella piezotolerans WP3] Length = 721 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 58/279 (20%), Positives = 103/279 (36%), Gaps = 43/279 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVSEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 394 Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + G + + F ++ A+ T Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDT 454 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPT 321 LA P++T + Q ASF G + + +S +V + GV L P Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 V + L I+ EVS ++ R+ TTV SG +VL GL+ +++Q+ Sbjct: 515 VNEGNAVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINEEVQES 572 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +P L IPI+G LF++S +++ + + P +++ Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKKNLMVFIKPTIIR 611 >gi|292493847|ref|YP_003529286.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4] gi|291582442|gb|ADE16899.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4] Length = 699 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 109/324 (33%), Gaps = 46/324 (14%) Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 L I + V L T+ A L+ +K Sbjct: 390 ASDLAALIQAEENTLLSPRGHVTLDERTNTLLVMDTADRLA---------------DLRK 434 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG- 242 ++ L+I QV ++ I D K +G + ++ G Sbjct: 435 LVARLDIPVR-QVLIESRIVIANSDFSKDLGIRFGLSKREDTGGAFDEVVTSGSLNGTTQ 493 Query: 243 --------------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 ++ + E L AL+ ++ P Sbjct: 494 IINRETLELQDRMNVNLPVTRQDAARIALALTKLPLGNLLELELSALQAEGRGEVISNPR 553 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + + A G + ++ +SS GATSV+ + L P + RI + + V Sbjct: 554 VITSNQNEALIEQGTEIPFQQATSS-GATSVSFKKAVLSLKVVPQITPDDRIIMDLT--V 610 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 ++ +G +PS R+ T V + +G T+VL G+ + + + +P L +P +G Sbjct: 611 NKDSVGQVFNGVPSIDTREVATQVLVDNGQTVVLGGIYEQEQNRASRRVPFLGDLPYVGT 670 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LFR+ + E+ I TP ++K Sbjct: 671 LFRDKSEVNNKDELLIFVTPKIIK 694 >gi|146309174|ref|YP_001189639.1| general secretion pathway protein D [Pseudomonas mendocina ymp] gi|145577375|gb|ABP86907.1| general secretion pathway protein D [Pseudomonas mendocina ymp] Length = 748 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 70/369 (18%), Positives = 126/369 (34%), Gaps = 32/369 (8%) Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 AD + L G +A + L+ + L + +A+ Sbjct: 222 IAD---PRSNRLLLLG--PREARLRLLKLAQSLDTPSSRSANTRVIRLRHADAKQLAE-- 274 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 + D + ++ + + ++ + + S + + A Q Sbjct: 275 -TLGDFGDNLSQSQGNQSSTPLKLMIRADQSLNAIVIMAEADMVSLFEDLVRQLDAPRAQ 333 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF---------- 245 V ++ I E+ DI +G Q +I G + ++ G + G Sbjct: 334 VLVEAAIVEMSGDINDALGVQWAIDGRHNALGGVNFSNTGLSIGTLLGAIARDETAELAK 393 Query: 246 ----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 L +F ++ AL L+ PTL + Q A G ++T S + Sbjct: 394 TLPNGAIFGLGNDNFGMLITALSATGKSNLLSTPTLLTLDNQPAEILVGQNVPFQTGSYT 453 Query: 302 -------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---Y 351 T++ D GV L TP + + L I+ E+S Sbjct: 454 TDASGAGNPFTTIERKDIGVTLKVTPHINDGATLRLVIEQEISSIAPSTGLNAQAVDLVT 513 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R +TV G IVL GL++DD +PLL IP +G LFR++R R++ + Sbjct: 514 NKRSIKSTVLADDGQVIVLGGLIQDDTSASASKVPLLGDIPGVGRLFRSTRDARQKRNLM 573 Query: 412 IAATPFLVK 420 + P + + Sbjct: 574 VFLRPSVAR 582 >gi|115380040|ref|ZP_01467087.1| general secretion pathway protein D [Stigmatella aurantiaca DW4/3-1] gi|310820456|ref|YP_003952814.1| general secretion pathway protein D [Stigmatella aurantiaca DW4/3-1] gi|115362957|gb|EAU62145.1| general secretion pathway protein D [Stigmatella aurantiaca DW4/3-1] gi|309393528|gb|ADO70987.1| General secretion pathway protein D [Stigmatella aurantiaca DW4/3-1] Length = 850 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 72/447 (16%), Positives = 147/447 (32%), Gaps = 69/447 (15%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 ++S G +++ I+ + ++V+ P D + R + Sbjct: 277 PTPGGMPPPDMSQGSGDTGGPVTL----SQIIPDERTNKLIIVASPGAFDRIQEIVREVD 332 Query: 89 LFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 + + G+ NV L D +++ + + + A+ + R + Sbjct: 333 IPTDSGGRINVYPLENADSEELASTLQTLAQGTANRPRNPAQQQPPGVPRQNAAVAAELF 392 Query: 148 HGMVR-TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V+ + + ++ + + +V+ L+I QV ++ I EV Sbjct: 393 SGEVKVSADKATNSLVIVASQADFKNIV--------RVIEKLDIP-RRQVFVEAVIMEVN 443 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGG--------KFVSEGGDFSVKGVLDRFS--- 255 D + G + G +S G ++ G L Sbjct: 444 LDRNSEFGINLHSGYKLDTSDGAATGIVGTKYTKQGAPPSLSLGSLVNLGGFLAGLQGPV 503 Query: 256 -------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-- 300 F VLHAL++ + + L+ P L + A T G ++ S Sbjct: 504 IPELKNLGIDVPAFGVVLHALQQNSDVNVLSTPHLLTSDNEEAEITVGQNVPFQAGFSPG 563 Query: 301 ---------------------------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + +T + + L P + I + I Sbjct: 564 SLGGTIGGIGGVTGGTNTGLSSALLGLGSSFAPITRQNVELKLTVKPQINESDFIRMVIT 623 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + E P+ R A TTV T+V+ G+++D + +P+L IP+ Sbjct: 624 EQTEEIASSDPVLG-PTTSKRSAKTTVVAKDQETVVIGGIMQDRTIESVSKVPILGDIPL 682 Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420 LG LFR + + +T + + TP++++ Sbjct: 683 LGHLFRETTRRKTKTNLLLFLTPYIIR 709 >gi|88858661|ref|ZP_01133302.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2] gi|88818887|gb|EAR28701.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2] Length = 563 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 62/278 (22%), Positives = 107/278 (38%), Gaps = 23/278 (8%) Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SIT 220 + L ++ K+ + L + + QV L+ I EV Q G Sbjct: 264 QASLVTVHALPSEIAAMKEFLRLSEESLQRQVILEAKIIEVTLKDDYQQGVNWKEVLGHI 323 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 GS+ + A+ G ++ G V F V+ L ++ L+ P +TA Sbjct: 324 GSTDLTFATTASGQIGNTITAGIGGVSSLVFKNADFSGVVSLLSTQGDVQMLSNPRVTAT 383 Query: 281 SGQSASFTSGGQHLYKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + Q A G + T SST S+T G+ L TP + G + L Sbjct: 384 NNQKAVIKVGQDEYFVTEVSSTTVTGNATTTTPEISLTPFFSGIALDVTPQIDKYGSVIL 443 Query: 331 RIQTEVSEPVIGVNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + V+E + +R++DT + SG +V+ GL++ Sbjct: 444 HVHPSVTETAEQRKVITLNNEEFVLPLAQSNIRESDTVIRAGSGEIVVIGGLMQTVTTDE 503 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + PLL +P+LG LF++ R +++ E+ I P +V Sbjct: 504 ESKTPLLGDMPVLGHLFKSVRKRQDKKELIILIKPTVV 541 >gi|187930465|ref|YP_001900952.1| general secretion pathway protein D [Ralstonia pickettii 12J] gi|187727355|gb|ACD28520.1| general secretion pathway protein D [Ralstonia pickettii 12J] Length = 807 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 69/322 (21%), Positives = 113/322 (35%), Gaps = 44/322 (13%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPSKSFAADFGGKFVS 240 A QV ++ I EV Q+G Q G++ G + + G + Sbjct: 430 ARRAQVYIESMIVEVTATKASQLGIQWMAGAGGPTTFFGGGTNFGSGANNLINLAGTIAT 489 Query: 241 EGGDF-----------------------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + +L AL ++ L+ P L Sbjct: 490 ITSGGIGSTAAQTAIGTLSNSVGQLNGGNFGVFNRGSGLGAILSALGSDGSVNVLSTPNL 549 Query: 278 TAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + + A G T S + T + D G+ L P + G + Sbjct: 550 ITLDNEEAKILIGQNVPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVK 609 Query: 330 LRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 ++I E S V G NA P+ VR +T V G +VL GLL+D+ Q ++ +P L Sbjct: 610 MQIFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGL 669 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-FFFNR 447 IPILGALFR+ R +T + + P +++ A + D+ Y+ D + F Sbjct: 670 GDIPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGTLSDNRYNYMRDTQQGFVSPN 728 Query: 448 VNKIYGPKEASEVEGQNYKGAI 469 + K+ + N Sbjct: 729 MLPTTSDKDTPVLPAPNAMRPA 750 >gi|325294579|ref|YP_004281093.1| type II and III secretion system protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065027|gb|ADY73034.1| type II and III secretion system protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 642 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 55/336 (16%), Positives = 121/336 (36%), Gaps = 34/336 (10%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 ++ L+ + + + + + ++ + ++ + S Sbjct: 306 PKTKIIKQELQEPTKTYIVNLNYANAEEIEKEIKELVKKLDKRERITVNKSTNSLLLTVT 365 Query: 178 NSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSS---------GP 226 +++MNLL + QV +K I ++ K GF I G + Sbjct: 366 KKHYQEIMNLLKKLDKPMKQVIVKAKIVQISTSAAKDFGFGWLIGGYNHMGTPPSSYITG 425 Query: 227 SKSFAADFGGKFVS-----------------EGGDFSVKGVLDRFSFETVLHALERATAI 269 S F + + E L AL+ Sbjct: 426 SYGFGLGSNTGVLPFINETSYSSLYNIPVGESTLALGILNKSQNLKVEIALKALQLDGNA 485 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPG 326 + ++ P + ++ Q A+ G + Y+ + ++G +V+ ++L P + + Sbjct: 486 KIVSSPEVLTLNNQEATIEQGIEIPYRESTVASGGATTYTVSFKRASLILKVKPHITNNN 545 Query: 327 RIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 I L ++ P + + + P+ R + +++ +G TIV+ G+ + + + K Sbjct: 546 EIILDLEVRKDSPNYEHVALTGSNEPAIDTRNVKSRIKVANGNTIVIGGIYEKEKSKSKT 605 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+P++S IP+LG LF+ E + I TP +V Sbjct: 606 GVPVISNIPLLGWLFKQESVKFTEKNLLIFITPKVV 641 >gi|308048042|ref|YP_003911608.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799] gi|307630232|gb|ADN74534.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799] Length = 681 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 64/259 (24%), Positives = 105/259 (40%), Gaps = 24/259 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------------------TGS 222 +++++L++ + QV ++ + VR +I +++G + I G Sbjct: 421 RLVDILDVPVK-QVVIESRMVTVRDNINEELGIRWGISDQQGDKGTAGTLPGAEDIANGI 479 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S + + F V + D + L ALER +A P LT + Sbjct: 480 VPSLSDRLNVNLPVVEPAGSIAFHVAKLGDGTLLDLELSALERENKGEIIASPRLTTANQ 539 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 +A G + + +SS GATSV + L TP + RI L + Sbjct: 540 YTAFIEQGTEIPFVQSTSS-GATSVEFKKAVLGLTVTPQITPDNRIVLDLTVTQDTRGET 598 Query: 343 VNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 V P+ ++ T V +G TIVL G+ + +PLL IP +G LFRN Sbjct: 599 VQTATGPAVAIDTQRISTQVLAQNGETIVLGGIFQQQQLNTVTKVPLLGDIPFVGVLFRN 658 Query: 401 SRFNREETEIFIAATPFLV 419 S+ E+ E+ I TP +V Sbjct: 659 SQDFTEKKELLIFVTPKIV 677 >gi|91791490|ref|YP_561141.1| type II and III secretion system protein [Shewanella denitrificans OS217] gi|91713492|gb|ABE53418.1| type II and III secretion system protein [Shewanella denitrificans OS217] Length = 705 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 60/306 (19%), Positives = 110/306 (35%), Gaps = 48/306 (15%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + +T + + V+N L+I QV ++ I EV + G Q + Sbjct: 315 IMAHVDTNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAENDDVGFGIQWAS 373 Query: 220 TGSSSGPSKSFAADFGGKFV---------------------------------------S 240 + A G + Sbjct: 374 MAGGGTQFNNLGATIGEVGAGVWAAREKDVAQVTTIDANNKPVVSNNPKTEGDYTLLAQA 433 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + + F ++ A+ T LA P++T + Q ASF G + T S Sbjct: 434 LGKVNGMAWGVASGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSQ 493 Query: 301 S------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 + +V + GV L TP + + L I+ EVS ++ R Sbjct: 494 NSSNGNANPFQTVERKEVGVKLKVTPQINEGTAVKLTIEQEVSGINGKTGVD--VTFATR 551 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + TTV SG +VL GL+ +++Q+ + +P L IP +G LF++S ++++ + + Sbjct: 552 RLTTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPFIGHLFKSSSSSKKKKNLMVFI 611 Query: 415 TPFLVK 420 P +++ Sbjct: 612 KPTIIR 617 >gi|78064965|ref|YP_367734.1| type II and III secretion system protein [Burkholderia sp. 383] gi|77965710|gb|ABB07090.1| type II and III secretion system protein [Burkholderia sp. 383] Length = 543 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 60/297 (20%), Positives = 108/297 (36%), Gaps = 34/297 (11%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197 +Q L Q ++ +++ NLL + QV Sbjct: 219 RAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRLDQVASLIEAIDRPSRQVR 278 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------SFAADFGGKFVSEGGD 244 ++ I E + + +G + ++ PS AA G F + Sbjct: 279 IEARIVEGEQGFSRNLGARVALRAQGRPPSGESATFTTGARNALDLAARPLGGFEAATAG 338 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F++ + L ALE + ++ P + A G + Y+ G Sbjct: 339 FTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQGSEVPYQ-AKVGNGV 397 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P + GR+ L + +V++ IG P+ + T VE+ + Sbjct: 398 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEN 455 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 GGT+ + G+ + + +PLL KIP LGALFR+ + E+ + TP +V Sbjct: 456 GGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQRNELVVFITPTVVDA 512 >gi|313497412|gb|ADR58778.1| General secretion pathway protein D [Pseudomonas putida BIRD-1] Length = 584 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 103/266 (38%), Gaps = 26/266 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK- 237 ++ + ++ L+I QV ++ IAEV +++G Q G G Sbjct: 272 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 330 Query: 238 -------------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G + F+F +++AL+ + L+ PTL Sbjct: 331 ASIAGAAASGDNEALGDLLSTTTGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 390 Query: 279 AISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + AS G + + T S + ++ + GV L P + + L I Sbjct: 391 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINVDNSVRLDIVQ 450 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS +A D+ R+ T V + G ++L GL+ D++ + +PLL IP L Sbjct: 451 EVSSIADTSSASDV-ITNKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 509 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G LFR+ + + + P +++ Sbjct: 510 GRLFRSDATRNTKQNLMVFIRPRILR 535 >gi|309785192|ref|ZP_07679823.1| general secretion pathway protein D [Shigella dysenteriae 1617] gi|308926312|gb|EFP71788.1| general secretion pathway protein D [Shigella dysenteriae 1617] Length = 681 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 370 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 429 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627 >gi|222034685|emb|CAP77427.1| hypothetical type II secretion proteinGspD [Escherichia coli LF82] Length = 679 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 368 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 427 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625 >gi|145597400|ref|YP_001161475.1| putative outer membrane porin HofQ [Yersinia pestis Pestoides F] gi|165928024|ref|ZP_02223856.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. F1991016] gi|166010419|ref|ZP_02231317.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. E1979001] gi|108781223|gb|ABG15281.1| putative membrane transport protein [Yersinia pestis Antiqua] gi|145209096|gb|ABP38503.1| membrane transport protein [Yersinia pestis Pestoides F] gi|165919973|gb|EDR37274.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. F1991016] gi|165990509|gb|EDR42810.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. E1979001] Length = 450 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85 P E A +++ + +++++ + + + + +V P +A ++ Sbjct: 63 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 118 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 L + G ++ + ++ A +TL A++ + + Sbjct: 119 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 174 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L G + + S A + + T L + A + + L + QV L I + Sbjct: 175 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 230 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262 + L+++G + G G + DF SV + E L A Sbjct: 231 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 289 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE+ + +A P L Q+AS G Y A ++ + + + TP + Sbjct: 290 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 349 Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L G+I L ++ + P I + +M ++ T V + G TIVL G+ + +Q Sbjct: 350 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 409 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 410 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 450 >gi|323527558|ref|YP_004229711.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001] gi|323384560|gb|ADX56651.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001] Length = 576 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 54/296 (18%), Positives = 108/296 (36%), Gaps = 33/296 (11%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196 ++ L +Q ++ ++ NLL + QV Sbjct: 282 ARAEDVRRLLTGSGNQRVLSKRGAVTADPRTNLLFVTDLEGRLTQIAALLASVDRPTRQV 341 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------FGGKFVSEGGD 244 ++ I E + +G + S+ G+++ + + F + Sbjct: 342 LIEARIVEGEHGFSRNLGVRLSMAGTAADGTTRGLSGGKDGLVYDLSARPIAGFDAATAG 401 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ L ALE ++ P + A G + Y+ G Sbjct: 402 LTLFAAGATRLLNVELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQGV 460 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P ++ GR+ L + +V++ +G P+ + T VE+ Sbjct: 461 SGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVED 518 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GGT+ + G+ D + +P+L KIP+LGALFR+ + +E+ + TP +V+ Sbjct: 519 GGTVSIGGIYATDGRDDVTRVPVLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 574 >gi|170739479|ref|YP_001768134.1| general secretion pathway protein D [Methylobacterium sp. 4-46] gi|168193753|gb|ACA15700.1| general secretion pathway protein D [Methylobacterium sp. 4-46] Length = 797 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 70/300 (23%), Positives = 122/300 (40%), Gaps = 21/300 (7%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205 G V + + + + S + +K++ +L A QV L+ IAEV Sbjct: 457 SGAVYGSGARRGGIGIVADETNNSLVISATRTQYEKILRILGRLDARPTQVLLETVIAEV 516 Query: 206 RRDILKQIGFQHSITGSS---------SGPSKSFAADFGGKFVSEG--GDFSVKGVLDRF 254 + + G Q + + S + G VS G +L+ Sbjct: 517 TLNDKLEFGVQWFLKNGGSRFNLAQSDTAASVASGTSGAGALVSAAMRGVPGFNYLLNDA 576 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSV 307 F VL+AL T + L+ P +T + ++A G Q S + + Sbjct: 577 DFHVVLNALRGVTRVNVLSSPNITVLDNRTARLQIGDQVPIVKQSGQSALAGNAPILNQI 636 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGG 366 D GV+L TP V G + L I EVS+ V + + P+ R R+ T+V + G Sbjct: 637 ELKDTGVILSVTPRVNKNGLVVLDINQEVSDVVPTTTSNINSPTIRQRRVATSVAVSDGH 696 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++ + G++++ Q E +P+L +P++G FRN R TE+ + P +++ A D Sbjct: 697 SLAIGGMVQEKAQIGTEALPVLGDLPVIGPAFRNKSDLRVRTELIVFLRPKVIRGTADAD 756 >gi|149190625|ref|ZP_01868893.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1] gi|148835508|gb|EDL52477.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1] Length = 674 Score = 169 bits (429), Expect = 8e-40, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 101/281 (35%), Gaps = 45/281 (16%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----- 237 +++ L+I QV ++ I E+ +G Q + S S G Sbjct: 334 EIIKQLDIR-RAQVLIEALIVELADVDGANLGVQWGNASAGSVVQFSNTGASIGNVMVGM 392 Query: 238 ---------------------------------FVSEGGDFSVKGVLDRFSFETVLHALE 264 + G + + ++ A+ Sbjct: 393 EEAKDKTTTETRYRADGTPYNVETKTSGDYTKLASALSGVQGAAVGIALGDWTALITAVS 452 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFT 319 + L+ P++T + ASF G + T ++S +V + G+ L Sbjct: 453 STSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSNNSNPFQTVDRKEVGIKLKVV 512 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + Sbjct: 513 PQINEGNSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLIDERAA 571 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P L IP LG LF ++ E+ + + P +++ Sbjct: 572 ESESKVPFLGDIPYLGRLFTSTSTTVEKKNLMVFIKPTIIR 612 >gi|315288713|gb|EFU48111.1| general secretion pathway protein D [Escherichia coli MS 110-3] Length = 681 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 607 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627 >gi|134283134|ref|ZP_01769835.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305] gi|134245329|gb|EBA45422.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305] Length = 575 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 148 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 206 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 207 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 263 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 264 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRVLSKRGSVLADPRTNLLFVTDLSGRL 323 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 324 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 383 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 384 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 443 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 444 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 500 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 501 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 560 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 561 SELVVYITPTVV 572 >gi|51556732|gb|AAU06138.1| MshL [Pseudoalteromonas tunicata] Length = 563 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 97/249 (38%), Gaps = 23/249 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 QV L+ I EV Q G GS+ + A+ G ++ G Sbjct: 293 RQVILEAKIIEVTLKDDYQQGVNWKEVLGHIGSTDLTFATTASGQIGNTITAGIGGVSSL 352 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------- 302 V F V+ L ++ L+ P +TA + Q A G + T SST Sbjct: 353 VFKNADFSGVVSLLSTQGDVQMLSNPRVTATNNQKAVIKVGQDEYFVTEVSSTTVTGNAT 412 Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PS 350 S+T G+ L TP + G + L + V+E + Sbjct: 413 TTTPEISLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETAEQRKVITLNNEEFVLPLAQ 472 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT + SG +V+ GL++ + PLL +P+LG LF++ R +++ E+ Sbjct: 473 SNIRESDTVIRAGSGEIVVIGGLMQTVTTDEESKTPLLGDMPVLGHLFKSVRKRQDKKEL 532 Query: 411 FIAATPFLV 419 I P +V Sbjct: 533 IILIKPTVV 541 >gi|300993062|ref|ZP_07180170.1| general secretion pathway protein D [Escherichia coli MS 200-1] gi|301048227|ref|ZP_07195262.1| general secretion pathway protein D [Escherichia coli MS 185-1] gi|300299921|gb|EFJ56306.1| general secretion pathway protein D [Escherichia coli MS 185-1] gi|300305186|gb|EFJ59706.1| general secretion pathway protein D [Escherichia coli MS 200-1] gi|324005480|gb|EGB74699.1| general secretion pathway protein D [Escherichia coli MS 57-2] gi|324011870|gb|EGB81089.1| general secretion pathway protein D [Escherichia coli MS 60-1] Length = 681 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627 >gi|28199566|ref|NP_779880.1| fimbrial assembly protein [Xylella fastidiosa Temecula1] gi|182682302|ref|YP_001830462.1| type IV pilus secretin PilQ [Xylella fastidiosa M23] gi|28057681|gb|AAO29529.1| fimbrial assembly protein [Xylella fastidiosa Temecula1] gi|182632412|gb|ACB93188.1| type IV pilus secretin PilQ [Xylella fastidiosa M23] Length = 636 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 105/264 (39%), Gaps = 28/264 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------------GSSSGPSKSFAA 232 DQV ++ I + +G + + GSS+ ++ Sbjct: 370 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTAGSSTSATRGLNV 429 Query: 233 DFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D GG + + + +F+ + L AL++ + ++ P + + + Sbjct: 430 DLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIKQ 489 Query: 290 GGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIG 342 G + Y T V+ +V + + L TPT+ + R+ L + E+ + + Sbjct: 490 GKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITI 549 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+ Sbjct: 550 ANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRG 609 Query: 403 FNREETEIFIAATPFLVKPVAMRD 426 ++++ E+ I TP +++ Sbjct: 610 KDKQKAELLIFVTPKVLRVANATA 633 >gi|325275690|ref|ZP_08141579.1| general secretion pathway protein D [Pseudomonas sp. TJI-51] gi|324099176|gb|EGB97133.1| general secretion pathway protein D [Pseudomonas sp. TJI-51] Length = 613 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 89/502 (17%), Positives = 163/502 (32%), Gaps = 63/502 (12%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 L + ++ L S + P ANA V+ S + + + + + L+ Sbjct: 128 TLSGSVAADLAGLLRPLVSSSGYIGPSSSANALVVTDSAANLERLESLVLQLDSGQRHDY 187 Query: 63 PVDVQDVLVSDPT---------------------KADVVVHSPRTMYLFG-------KNV 94 + V + + AD + + + G Sbjct: 188 EL----VTLHNAQTEAVFAVVEAAAGGPDSGAQVVADA---NGSRLLILGPAKSRQRLAQ 240 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 ++ + Q + L + L L + L G Sbjct: 241 LTRSLDVAAPATAQNWRVVRLQHSNAEQLADVLGEVGKRLDGAPGTRDLGANLTGDAVVK 300 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 D+ + + S ++++ L+ QV + I EV I + +G Sbjct: 301 ADADQNALV-------LLGEPQTLGSVEQIIQQLD-QPRAQVLIHAAIVEVSGSIDEALG 352 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEG----GDFSVKGVLDRFSFETVLHALERATAIR 270 Q + +F+ G G + F ++ AL ++ Sbjct: 353 VQWGVGTGGLNGGVTFSESGTGLADLLGKEAKLPGGAALAIGTDRFAALISALASSSRSN 412 Query: 271 TLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 L+ P+L + Q A G ++ S T+V D G+ L P + Sbjct: 413 LLSTPSLLTLDNQEAHILVGQNVAFKTGSYVTPGSGSENPFTTVERKDIGISLKVRPHIN 472 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + L ++ E SE D+ R +T+ G IV+ GL+KD ++Q++ Sbjct: 473 EGQSLRLEVEQESSEIAPSTAENDL-ITNKRTLKSTILASDGEIIVIGGLIKDSMRQVER 531 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR--------DLSRPDDHYS 435 G+PLLS+IP LG LFR +E+T + + P +++ A R D R D Sbjct: 532 GVPLLSRIPWLGGLFRWRSDIQEKTNLMVFLRPTILRSQAERVEVGRRAYDGVRAADDSP 591 Query: 436 VEDDAKAFFFNRVNKIYGPKEA 457 + DA+ F R + Sbjct: 592 LPADAQRLFEPRRLPSAQVPQP 613 >gi|256024452|ref|ZP_05438317.1| general secretion pathway protein D precursor [Escherichia sp. 4_1_40B] Length = 686 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|218701737|ref|YP_002409366.1| general secretion pathway protein D [Escherichia coli IAI39] gi|227887667|ref|ZP_04005472.1| type II secretion protein GspD [Escherichia coli 83972] gi|301019909|ref|ZP_07184044.1| general secretion pathway protein D [Escherichia coli MS 196-1] gi|218371723|emb|CAR19573.1| general secretion pathway protein D precursor [Escherichia coli IAI39] gi|227835063|gb|EEJ45529.1| type II secretion protein GspD [Escherichia coli 83972] gi|299882007|gb|EFI90218.1| general secretion pathway protein D [Escherichia coli MS 196-1] gi|307555055|gb|ADN47830.1| general secretion pathway protein GspD [Escherichia coli ABU 83972] Length = 686 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|157959974|ref|YP_001500008.1| general secretion pathway protein D [Shewanella pealeana ATCC 700345] gi|157844974|gb|ABV85473.1| general secretion pathway protein D [Shewanella pealeana ATCC 700345] Length = 710 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 59/279 (21%), Positives = 105/279 (37%), Gaps = 43/279 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVGEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGV 394 Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + G + + F ++ A+ T Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFAALIQAVSSDT 454 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPT 321 LA P++T + Q ASF G + + +S +V + GV L P Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + L I+ EVS ++ R+ TTV SG +VL GL+K+++Q+ Sbjct: 515 INEGSSVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLIKEEVQES 572 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +P L IPI+G LF++S +++T + + P +++ Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKTNLMVFIKPTIIR 611 >gi|254429436|ref|ZP_05043143.1| Bacterial type II and III secretion system protein [Alcanivorax sp. DG881] gi|196195605|gb|EDX90564.1| Bacterial type II and III secretion system protein [Alcanivorax sp. DG881] Length = 384 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 96/411 (23%), Positives = 152/411 (36%), Gaps = 78/411 (18%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + + +L P V V SDP A + V G A Sbjct: 18 TVSNAQDLTDSMRLAPGDQKVLTFPAAVSKVATSDPGVAALTV------------TGSAE 65 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++L + VL +R Sbjct: 66 LLLTAK------------------------------------AEGSAVLSVWLRNSSKPL 89 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R+ + T L + QV + + EV R L Q+G +S Sbjct: 90 RSTVVVATTLGDALPFGT------------------QVQTDIRVLEVSRSELNQLGMSYS 131 Query: 219 ITGSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 + + + AA G + G + ++ALE TLA Sbjct: 132 NSFNGGQSAVGIAAPGSGFQVPGAVPTPLGTEGFNLFGFGANSVLAINALEAGGFAYTLA 191 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 EP+LT++SGQSASF SGG+ S+T + ++G+ L TPTV+ +I L++ Sbjct: 192 EPSLTSLSGQSASFLSGGEFPVP-TRSTTDGVQIEFKEFGIGLSLTPTVIDKSQIILKVA 250 Query: 334 TEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EVSE + +P RVR+A+TTV L G T +++GL+ + + +P + Sbjct: 251 PEVSELDFSAGVETGGVAVPGLRVRRAETTVSLAPGETFIISGLVSRNTINSSDRLPGIG 310 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSVED 438 IP+LGA FR+SR +++ E+ + TP LV P ++ P Y Sbjct: 311 NIPLLGAFFRSSRIQKDDKELVMVVTPHLVTPQEATSPPVTLPGAGYHSSS 361 >gi|170022485|ref|YP_001718990.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis YPIII] gi|169749019|gb|ACA66537.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis YPIII] Length = 460 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85 P E A +++ + +++++ + + + + +V P +A ++ Sbjct: 73 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 128 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 L + G ++ + ++ A +TL A++ + + Sbjct: 129 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 184 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L G + + S A + + T L + A + + L + QV L I + Sbjct: 185 -LQGGLLSPMGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 240 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262 + L+++G + G G + DF SV + E L A Sbjct: 241 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 299 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE+ + +A P L Q+AS G Y A ++ + + + TP + Sbjct: 300 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 359 Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L G+I L ++ + P I + +M ++ T V + G TIVL G+ + +Q Sbjct: 360 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 419 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 420 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 460 >gi|251773365|gb|EES53914.1| putative type II secretion system protein D [Leptospirillum ferrodiazotrophum] Length = 604 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 71/371 (19%), Positives = 121/371 (32%), Gaps = 55/371 (14%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 LE+TLR+ I + + + S TV + G VR + +QR +++ L Sbjct: 264 DKLEITLRKTIPHAVVSADPKSQTVSVRGTVRDVYLAQRYLDIVRDQL------------ 311 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFV 239 +V ++T+AE+ G S + S + Sbjct: 312 ------------RREVFFRITVAEIDLSDANAYGINWSAMAKGVFNSTLSLTSGGTSNAG 359 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 F V+ AL+ + L +P + +SGQ S + Y Sbjct: 360 LSATGGVATPYGATFGQTAVIQALDTIGRVHVLNQPYVGTVSGQPVSLNATTNIPYLQGE 419 Query: 300 S----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--- 346 + + GV L TPT L +I L V+ V Sbjct: 420 YPFFAGGLSSATETLPQIAYAAVGVNLEVTPT-LEGDQIHLHGTVVVNTLQQMVTINIKN 478 Query: 347 ----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 P R T + G TIV+ GL+ + + IP L IP L LF Sbjct: 479 IGEFQNPQINTRSETTEITAHDGQTIVIGGLMANTKNKQFWTIPFLGSIPGLKWLFSGYN 538 Query: 403 FNREETEIFIAATPFL-----VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 + ++ TE+ I TP + + + ++ PD + + ++ + A Sbjct: 539 YQKQVTELAILITPEIKKTPRLDAASTEEMMDPDGRFYRKSLPG-------SRPFPVPPA 591 Query: 458 SEVEGQNYKGA 468 + G G+ Sbjct: 592 PAIPGYGTGGS 602 >gi|146307949|ref|YP_001188414.1| general secretion pathway protein D [Pseudomonas mendocina ymp] gi|145576150|gb|ABP85682.1| general secretion pathway protein D [Pseudomonas mendocina ymp] Length = 645 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 80/451 (17%), Positives = 150/451 (33%), Gaps = 49/451 (10%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 P L + +NA +I+ I + + + L++ V V + Sbjct: 154 PLVPQYGHLAAVTSSNALIISDRSANIARIQDLMRQLDQSGAQDFSV----VTLQHAWVM 209 Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL--------- 127 D V + K V+ + +L +A L +L Sbjct: 210 DAAEVLNTSIARGQAKGTSATQVVADARTNRLILLGPPEARAKLADLARSLDSPSSRSAN 269 Query: 128 ----RRFIADSNIRVEMVSD---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 R D+ E + D + T + ++ L+ + Sbjct: 270 TRVIRLRHNDAKSLAETLGDISEGLKNKEGSETTGRQSNILIRADESLNALVLLAEPDLV 329 Query: 181 S--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + + ++ L++ QV ++ I EV DI +G Q ++ + G Sbjct: 330 ATLEDIVRQLDVP-RAQVMVEAAIVEVSGDITDAVGVQWAVDARGNTGGLGGVNFGGTGL 388 Query: 239 V---------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + + F ++ AL + L+ P+L + Q Sbjct: 389 SVGTVLQILQSGEIPENTTLPDGAIIGIGSDRFGALITALSANSKSNLLSTPSLLTLDNQ 448 Query: 284 SASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 A G ++T S + T++ D GV L TP++ + L I+ E+ Sbjct: 449 KAEILVGQNVPFQTGSYTTDASGAGNPFTTIERKDIGVTLKVTPSINEGATLRLEIEQEI 508 Query: 337 SEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 S R +T+ G IVL GL++DD+ Q +PLL IP+ Sbjct: 509 SSIAPSTGLNAQAVDLVTNKRSIKSTILADDGQVIVLGGLIQDDVTQSISKVPLLGDIPL 568 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424 +G LFR++R + + + + P +V+ A Sbjct: 569 IGGLFRSTRDSHVKRNLMVFLRPTVVRDGAG 599 >gi|325498531|gb|EGC96390.1| type II secretion protein GspD [Escherichia fergusonii ECD227] Length = 686 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|193734249|gb|ACF19898.1| PilQ [Kingella kingae] Length = 700 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 100/271 (36%), Gaps = 26/271 (9%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------ 219 NQ +++++ L++ + QV ++ I E + + +G + Sbjct: 422 TDNQSVIQKFERLIDELDVPAK-QVMVEARIVEAADGVSRSLGVKFGARRNGATSWGGDW 480 Query: 220 -----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 +S +F + S SV + L A+E Sbjct: 481 NNSIALNNRSTNSGTSTGGVAFNPNVNLPVASATSSISVIHSWAAGALGLELSAMETENL 540 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 +T++ P + + A G Q Y SS G +S D + L TP + +I Sbjct: 541 TKTISTPRVLTQDRKEAEIRQGTQIPYT-TRSSDGDSSTAFKDAVLSLKVTPRITPDSKI 599 Query: 329 GLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L I EP VNA P R T + G T+V+ G+ ++ + +PL Sbjct: 600 ILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQMANNVSKVPL 659 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFL 418 L IP+LG LF++ +R E+ TP + Sbjct: 660 LGDIPVLGNLFKSRSRSRSRNELLFFITPRI 690 >gi|189351753|ref|YP_001947381.1| type IV pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|189335775|dbj|BAG44845.1| type IV pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 528 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 34/298 (11%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196 +Q L Q ++ +++ NLL + QV Sbjct: 203 ARAQDVQRLLAGATGQRLLSKRGAAAADARTNLLFVTDLAPRIAQIADLIAALDRPSRQV 262 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGG 243 ++ I E + + +G + ++ + AA F + Sbjct: 263 RIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAGASPAGARTALDLAARPLAGFDAATA 322 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F++ + L ALE + ++ P + A G + Y+ G Sbjct: 323 GFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ-AKVGNG 381 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 T V + L P + GR+ L + +V++ +G P+ + T VE+ Sbjct: 382 VTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVD 439 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 440 DGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPTIVSA 497 >gi|315297663|gb|EFU56940.1| general secretion pathway protein D [Escherichia coli MS 16-3] Length = 681 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627 >gi|254787478|ref|YP_003074907.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901] gi|237686656|gb|ACR13920.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901] Length = 727 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 115/303 (37%), Gaps = 43/303 (14%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + +A+ T + K++++ ++I QV ++ I D K++G Sbjct: 422 SERGQAIVDERTNSIILTDTEEKIDQFKQLIDRIDIPVR-QVMIEARIVVANSDFRKELG 480 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVS---------------------------------- 240 F+ + S S S +F G S Sbjct: 481 FRIAGDAVESSKSGSHIHEFTGSLDSVYADETSITGAFVDSDGDGTADRAHTFPQNSFVD 540 Query: 241 -----EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G + + + F L AL+ + +++P + Q AS SG + Sbjct: 541 LGVFNPTGSLAWNVISNNFMIGMELSALQDSGFAEIVSQPKVITGDKQQASIQSGTSVPF 600 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + S+S G T ++ D + L TP + RI + E+ + + +P + Sbjct: 601 QEESASGGTT-ISFKDVVLRLDVTPQITPDNRIIMD--LEILQDSVTGYESGVPIIDITH 657 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 DT+V + G T+VL G+ + ++ + +PLL IP+LG LFR ++ E+ I T Sbjct: 658 LDTSVLVADGDTVVLGGIYATEQRKGQSKVPLLGDIPLLGRLFRYDISQEDKRELLIFIT 717 Query: 416 PFL 418 P + Sbjct: 718 PRI 720 >gi|254038140|ref|ZP_04872198.1| general secretion pathway protein D [Escherichia sp. 1_1_43] gi|226839764|gb|EEH71785.1| general secretion pathway protein D [Escherichia sp. 1_1_43] gi|323971766|gb|EGB66992.1| general secretion pathway protein D [Escherichia coli TA007] Length = 686 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDAN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|221201610|ref|ZP_03574648.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M] gi|221207315|ref|ZP_03580325.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2] gi|221172903|gb|EEE05340.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2] gi|221178426|gb|EEE10835.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M] Length = 571 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 34/298 (11%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196 +Q L Q ++ +++ NLL + QV Sbjct: 246 ARAQDVQRLLAGATGQRLLSKRGAAAADARTNLLFVTDLAPRIAQIADLIAALDRPSRQV 305 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGG 243 ++ I E + + +G + ++ + AA F + Sbjct: 306 RIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAAASAAGPRTALDLAARPLAGFDAATA 365 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F++ + L ALE + ++ P + A G + Y+ G Sbjct: 366 GFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ-AKVGNG 424 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 T V + L P + GR+ L + +V++ +G P+ + T VE+ Sbjct: 425 VTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVD 482 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 483 DGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPTIVSA 540 >gi|172059384|ref|YP_001807036.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6] gi|171991901|gb|ACB62820.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6] Length = 553 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 109/295 (36%), Gaps = 34/295 (11%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197 + L Q ++ +++ NLL + QV Sbjct: 229 RALDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRIVQIAGLIDAIDRPSRQVR 288 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGD 244 ++ I E + + +G + ++ P+ AA G F + Sbjct: 289 IEARIVEGEQGFSRNLGARIALRAQGRAPTADGAASATDTRNALDLAARPLGGFEAATAG 348 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F++ + L ALE + ++ P + A G + Y+ G Sbjct: 349 FTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQGSELPYQ-AKVGNGV 407 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P + GR+ L + +V++ IG P+ + T VE+ + Sbjct: 408 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEN 465 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 466 GGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSELVVFITPTVV 520 >gi|332973070|gb|EGK11007.1| type IV pilus biogenesis protein PilQ [Kingella kingae ATCC 23330] Length = 700 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 100/271 (36%), Gaps = 26/271 (9%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------ 219 NQ +++++ L++ + QV ++ I E + + +G + Sbjct: 422 TDNQSVIQKFERLIDELDVPAK-QVMVEARIVEAADGVSRSLGVKFGARRNGATSWGGDW 480 Query: 220 -----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 +S +F + S SV + L A+E Sbjct: 481 NNSIALNNRSTNSGTSTGGVAFNPNVNLPVASATSSISVIHSWAAGALGLELSAMETENL 540 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 +T++ P + + A G Q Y SS G +S D + L TP + +I Sbjct: 541 TKTISTPRVLTQDRKEAEIRQGTQIPYT-TRSSDGDSSTAFKDAVLSLKVTPRITPDSKI 599 Query: 329 GLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L I EP VNA P R T + G T+V+ G+ ++ + +PL Sbjct: 600 ILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQMANNVSKVPL 659 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFL 418 L IP+LG LF++ +R E+ TP + Sbjct: 660 LGDIPVLGNLFKSRSRSRSRNELLFFITPRI 690 >gi|323966493|gb|EGB61926.1| general secretion pathway protein D [Escherichia coli M863] gi|327251745|gb|EGE63431.1| general secretion pathway protein D [Escherichia coli STEC_7v] Length = 686 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|301326853|ref|ZP_07220153.1| general secretion pathway protein D [Escherichia coli MS 78-1] gi|300846528|gb|EFK74288.1| general secretion pathway protein D [Escherichia coli MS 78-1] Length = 686 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|110643200|ref|YP_670930.1| type II secretion protein GspD [Escherichia coli 536] gi|194436907|ref|ZP_03069007.1| general secretion pathway protein GspD [Escherichia coli 101-1] gi|218550223|ref|YP_002384014.1| general secretion pathway protein D [Escherichia fergusonii ATCC 35469] gi|218555536|ref|YP_002388449.1| general secretion pathway protein D [Escherichia coli IAI1] gi|218696673|ref|YP_002404340.1| general secretion pathway protein D precursor [Escherichia coli 55989] gi|254162916|ref|YP_003046024.1| type II secretion protein GspD [Escherichia coli B str. REL606] gi|291284343|ref|YP_003501161.1| General secretion pathway protein D [Escherichia coli O55:H7 str. CB9615] gi|300931844|ref|ZP_07147141.1| general secretion pathway protein D [Escherichia coli MS 187-1] gi|300950837|ref|ZP_07164722.1| general secretion pathway protein D [Escherichia coli MS 116-1] gi|300958340|ref|ZP_07170482.1| general secretion pathway protein D [Escherichia coli MS 175-1] gi|110344792|gb|ABG71029.1| hypothetical type II secretion protein GspD [Escherichia coli 536] gi|194424389|gb|EDX40376.1| general secretion pathway protein GspD [Escherichia coli 101-1] gi|218353405|emb|CAU99456.1| general secretion pathway protein D precursor [Escherichia coli 55989] gi|218357764|emb|CAQ90408.1| general secretion pathway protein D precursor [Escherichia fergusonii ATCC 35469] gi|218362304|emb|CAQ99925.1| general secretion pathway protein D precursor [Escherichia coli IAI1] gi|242378520|emb|CAQ33305.1| pulD [Escherichia coli BL21(DE3)] gi|253974817|gb|ACT40488.1| GspD, hypothetical type II secretion protein [Escherichia coli B str. REL606] gi|253978972|gb|ACT44642.1| GspD, hypothetical type II secretion protein [Escherichia coli BL21(DE3)] gi|284922988|emb|CBG36080.1| type II secretion system protein D [Escherichia coli 042] gi|290764216|gb|ADD58177.1| General secretion pathway protein D [Escherichia coli O55:H7 str. CB9615] gi|300314983|gb|EFJ64767.1| general secretion pathway protein D [Escherichia coli MS 175-1] gi|300449873|gb|EFK13493.1| general secretion pathway protein D [Escherichia coli MS 116-1] gi|300460267|gb|EFK23760.1| general secretion pathway protein D [Escherichia coli MS 187-1] gi|320656346|gb|EFX24253.1| General secretion pathway protein D [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320666867|gb|EFX33843.1| General secretion pathway protein D [Escherichia coli O157:H7 str. LSU-61] gi|324114991|gb|EGC08956.1| general secretion pathway protein D [Escherichia fergusonii B253] gi|332344919|gb|AEE58253.1| general secretion pathway protein GspD [Escherichia coli UMNK88] Length = 686 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|320661717|gb|EFX29125.1| General secretion pathway protein D [Escherichia coli O55:H7 str. USDA 5905] Length = 686 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|293416407|ref|ZP_06659046.1| general secretion pathway protein D [Escherichia coli B185] gi|291431763|gb|EFF04746.1| general secretion pathway protein D [Escherichia coli B185] Length = 686 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGANNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGHLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|254482717|ref|ZP_05095955.1| type IV pilus secretin PilQ subfamily, putative [marine gamma proteobacterium HTCC2148] gi|214037076|gb|EEB77745.1| type IV pilus secretin PilQ subfamily, putative [marine gamma proteobacterium HTCC2148] Length = 692 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 57/296 (19%), Positives = 109/296 (36%), Gaps = 32/296 (10%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 I V + T + ++++ ++I QV ++ I + D+ + Sbjct: 393 ISQRGSVVVDARTNSLIITDTAAKLAEIRELIEQVDIPVR-QVMIESRIVIAQSDLTHSL 451 Query: 214 GFQHSITGSSSGPSKSFAADFGGK---------------------------FVSEGGDFS 246 G + +A + V+ F+ Sbjct: 452 GIEWGGGYIDDVNGNILSASGDAQNVIGLNNSIINGETPSVSYPGALLVDLGVASTSGFA 511 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + + ALE A +++P + Q A+ SG + Y+ ++S GATS Sbjct: 512 LGFTSNDLFLTAEISALEAAGQGEVVSQPKVITGDKQQATIKSGTEIPYQEAAAS-GATS 570 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELP 363 + + + L TP + R+ L + V + V G +PS + T V + Sbjct: 571 TSFKEAVLELEVTPNITPDDRVMLDLNVKQDSVGDLVPSGQGGFIPSIDTTEITTQVLVG 630 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G T+VL G+ K + + +P +P +GA FR+ N +TE I TP ++ Sbjct: 631 NGETVVLGGVFKTEDLETVNKVPFFGDLPYVGAFFRSESRNNTKTETLIFITPRIL 686 >gi|188990354|ref|YP_001902364.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris pv. campestris str. B100] gi|167732114|emb|CAP50306.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris pv. campestris] Length = 626 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 100/261 (38%), Gaps = 27/261 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231 DQV ++ I + +G + + G+ + Sbjct: 364 RPVDQVLIEGRIVIATDTFARDLGAKFGLGGTHTYGDNVATIGSGATGGGVAAGRGLNVN 423 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + + + F+ + L AL++ ++ P + + + G Sbjct: 424 LPTGAFTSGATAPSLAYTLLGSNFNLDLELSALQQEGRGEVISNPRIVTSNQREGVIKQG 483 Query: 291 GQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGV 343 + Y T++ T +V + + L TPT+ + R+ L + EV E + Sbjct: 484 REIGYVTITGGTAGQAATPNVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVDELIELP 543 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 N G +PS R+ +T V + G T+V+ G+ + + +P L +P LG LF++ Sbjct: 544 NYGTVPSINRREINTAVLVDDGQTVVIGGVYEFSDRSSVNKVPFLGDVPFLGNLFKSRGR 603 Query: 404 NREETEIFIAATPFLVKPVAM 424 ++++ E+ I TP +++ + Sbjct: 604 SKDKAELLIFITPKVLRVASA 624 >gi|83943483|ref|ZP_00955942.1| general secretion pathway protein D [Sulfitobacter sp. EE-36] gi|83845715|gb|EAP83593.1| general secretion pathway protein D [Sulfitobacter sp. EE-36] Length = 631 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 73/407 (17%), Positives = 153/407 (37%), Gaps = 29/407 (7%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA-DVVVHSPRTMYLFGKN 93 + I + G G ++S+ ++L + A DV + Sbjct: 188 SAILEVLGQAGTGARLSVDAGSNLLLVRGTPEDIAEIRSLAIAMDVAPRKDPR-----EA 242 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 V L D + + ++ D + + + + V L+ +V Sbjct: 243 VATTVFNLQYGDAQIIADIIKGTVGDATDITNAVAADVGAQSAEATSDGQFVPLNRVV-- 300 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D+ ET ++++ L++ QV ++ I EV ++ +++ Sbjct: 301 APDAVNITASVETNSIVVRGTAAQVQEVGQLVHALDVRRP-QVMIEAAIVEVSGEVAERL 359 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------------LDRFSFETVL 260 G Q + + + + + G VS G + GV F ++ Sbjct: 360 GVQLGLGPNVPNGAIAASNFSNGGGVSLGSVLAAVGVPAGSALSTGLTLGAGGNDFGILV 419 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDYGV 314 AL ++T+ R L+ P++T + + A+ G + +++T T++ D G+ Sbjct: 420 QALSQSTSARLLSTPSVTTLDNEPATIVVGQNVPFRTGSFATDGNTATPFTTIERRDVGI 479 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 ++ P + + G + L I+ E+S V R +TTV + GT+VL GL Sbjct: 480 TMNVVPRITAGGVVQLVIEQEISSLTNANVEGAADLVTNRRVINTTVMADNRGTVVLGGL 539 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + DD +P L +P++G LF++ + +F+ P +++ Sbjct: 540 ITDDRINGSSKVPGLGDLPVVGELFKSRNARNTQRTLFVFLRPTILR 586 >gi|163781944|ref|ZP_02176944.1| putative type II secretion system protein [Hydrogenivirga sp. 128-5-R1-1] gi|159883164|gb|EDP76668.1| putative type II secretion system protein [Hydrogenivirga sp. 128-5-R1-1] Length = 518 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 19/244 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV ++ I E+ + Q G S + + + GG FS+ V Sbjct: 273 KQVLIEAKIVEIALSDVFQYGIDWSTFFRDVFGTGANVTLSQTLSIPTGGFFSLNVV--S 330 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------ 307 F T+++AL + TL+ P + +GQ+A +G + + T + Sbjct: 331 SDFSTLVNALATYGKVYTLSNPRIMVSNGQTALIATGIVTPFFERQAVTITGTTTTQIQE 390 Query: 308 ----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKA 356 T GV+L TP + G I + I + V G + P +++ Sbjct: 391 NIVKTNVLEGVLLGVTPYIDDNGSIVMNIIPVATRLEGSKTLEVNGQVLAEAPILNIKET 450 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V + +G +V+ GL+ D + +P L IP+LG LF++ R +E+ E+ I P Sbjct: 451 GTIVRVRNGELVVIGGLIGDVRSVQERKVPGLGDIPVLGYLFKSKRTVKEKRELIIFLRP 510 Query: 417 FLVK 420 ++ Sbjct: 511 RIID 514 >gi|167045577|gb|ABZ10227.1| putative bacterial type II and III secretion system protein [uncultured marine crenarchaeote HF4000_APKG10I20] Length = 648 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 96/250 (38%), Gaps = 18/250 (7%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------- 234 + +L+I+ QV ++ I E+ + +++G + G Sbjct: 399 IKILDISTP-QVLIEAKIVEISKTFSQELGISWGLVNPEPGFPTVTGNSTFDTQFLVDLR 457 Query: 235 -----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 V+ + + L ALE++ R ++ P +T + A S Sbjct: 458 PTVDIATGNVAGFDSLIQGFLPGNIALNVRLEALEKSGKGRVISSPRVTTADNKEARVLS 517 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 G Y+ S S+ + + L TP V S I + I + A +P Sbjct: 518 GRDIPYQVNSVEG--NSIQFVNAELSLTVTPHVTSDNSIYMTIDATKNAADFAQLAAGIP 575 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + ++ T V + +G T VLAG+ + + K+ +P SK+P++G LFR E Sbjct: 576 TITRKEMHTEVLVGNGETTVLAGIYESTSTENKKAVPWFSKLPLVGFLFRAFDDKDTINE 635 Query: 410 IFIAATPFLV 419 + + TP +V Sbjct: 636 LLVFITPTIV 645 >gi|225848499|ref|YP_002728662.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1] gi|225643373|gb|ACN98423.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1] Length = 604 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 24/252 (9%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------------SKSFA 231 Q++++ I ++ +K +G Q S+ ++A Sbjct: 351 RPYQISIEARIVQISSKNVKDLGIQWGGLASNIDNNNTKIIAGTNSTSYLANYRPGSAYA 410 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 DF G FS+ +L + L AL+ + L++P++ I G++A + Sbjct: 411 VDFPAVQSKIPGGFSLGFILGGTQNFLDIRLSALQSIGKSKILSKPSVITIDGETAEISQ 470 Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y T ++ G T SV+ + L+ TP + G I + + P Sbjct: 471 GYEIPYTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLLLG 530 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P + + + V G +V+ G+L+ G+P L IPILG LF+ + Sbjct: 531 NPPIQTKTVTSKVVAKDGSVVVIGGILEKTEDTQTSGVPGLMNIPILGNLFKENFKQDTS 590 Query: 408 TEIFIAATPFLV 419 TE+ I +P +V Sbjct: 591 TELLIFLSPKIV 602 >gi|22127802|ref|NP_671225.1| putative outer membrane porin HofQ [Yersinia pestis KIM 10] gi|45440014|ref|NP_991553.1| putative outer membrane porin HofQ [Yersinia pestis biovar Microtus str. 91001] gi|108814075|ref|YP_649842.1| putative outer membrane porin HofQ [Yersinia pestis Nepal516] gi|150260832|ref|ZP_01917560.1| putative membrane transport protein [Yersinia pestis CA88-4125] gi|218927361|ref|YP_002345236.1| putative outer membrane porin HofQ [Yersinia pestis CO92] gi|229310101|ref|YP_072232.2| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 32953] gi|229358042|ref|YP_653226.2| putative outer membrane porin HofQ [Yersinia pestis Antiqua] gi|294502239|ref|YP_003566301.1| putative membrane transport protein [Yersinia pestis Z176003] gi|21960932|gb|AAM87476.1|AE013997_11 putative transport portein [Yersinia pestis KIM 10] gi|45434869|gb|AAS60430.1| putative membrane transport protein [Yersinia pestis biovar Microtus str. 91001] gi|108777723|gb|ABG20242.1| membrane transport protein [Yersinia pestis Nepal516] gi|115345972|emb|CAL18836.1| putative membrane transport protein [Yersinia pestis CO92] gi|149290240|gb|EDM40317.1| putative membrane transport protein [Yersinia pestis CA88-4125] gi|262364270|gb|ACY60827.1| putative membrane transport protein [Yersinia pestis D182038] gi|294352698|gb|ADE63039.1| putative membrane transport protein [Yersinia pestis Z176003] Length = 374 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 96/233 (41%), Gaps = 6/233 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GV 250 QV L I + + L+++G + G G + DF SV Sbjct: 143 QQVQLSAHIVTISSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVAR 201 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + E L ALE+ + +A P L Q+AS G Y A ++ Sbjct: 202 IGGRLLELELSALEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 261 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P I + +M ++ T V + G TI Sbjct: 262 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 321 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 VL G+ + +Q +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 322 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 374 >gi|222109862|ref|YP_002552126.1| general secretion pathway protein d [Acidovorax ebreus TPSY] gi|221729306|gb|ACM32126.1| general secretion pathway protein D [Acidovorax ebreus TPSY] Length = 781 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 102/270 (37%), Gaps = 34/270 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ I EV + + + G Q + G + + D ++ Sbjct: 431 GRRAQVLIESLIVEVSANKVAEFGIQWQGVLGNYGSTLGVLGNNSSVAGRNILDLALAAA 490 Query: 251 LDRFS------------------------FETVLHALERATAIRTLAEPTLTAISGQSAS 286 + + + LE L+ P L + + A Sbjct: 491 TGNVTSIASAKPAAGMNLAVAPRINGKYYLGALANFLENTGDANVLSTPNLLTLDNEEAQ 550 Query: 287 FTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 G + T S + T+V D G++L P + G + L + EVS Sbjct: 551 IIIGNNVPFVTGSYANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTVKLTMYQEVS 610 Query: 338 EPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + + + PS R ++TV + G IV+ GLL+D+ ++ +P++ +P++G Sbjct: 611 KVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALNQDKVPVMGDLPVVGG 670 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LFRN + R++T + + P +++ A D Sbjct: 671 LFRNEKRTRQKTNLMVFLRPMVIRDSAASD 700 >gi|157157281|ref|YP_001464424.1| general secretion pathway protein D [Escherichia coli E24377A] gi|188495193|ref|ZP_03002463.1| general secretion pathway protein D [Escherichia coli 53638] gi|191169103|ref|ZP_03030864.1| general secretion pathway protein GspD [Escherichia coli B7A] gi|193062082|ref|ZP_03043178.1| general secretion pathway protein GspD [Escherichia coli E22] gi|260869724|ref|YP_003236126.1| putative type II secretion protein GspD [Escherichia coli O111:H- str. 11128] gi|300824048|ref|ZP_07104169.1| general secretion pathway protein D [Escherichia coli MS 119-7] gi|300905916|ref|ZP_07123648.1| general secretion pathway protein D [Escherichia coli MS 84-1] gi|301304138|ref|ZP_07210254.1| general secretion pathway protein D [Escherichia coli MS 124-1] gi|307310403|ref|ZP_07590051.1| general secretion pathway protein D [Escherichia coli W] gi|309794068|ref|ZP_07688493.1| general secretion pathway protein D [Escherichia coli MS 145-7] gi|331669777|ref|ZP_08370622.1| general secretion pathway protein D [Escherichia coli TA271] gi|331679035|ref|ZP_08379707.1| general secretion pathway protein D [Escherichia coli H591] gi|157079311|gb|ABV19019.1| general secretion pathway protein D [Escherichia coli E24377A] gi|188490392|gb|EDU65495.1| general secretion pathway protein D [Escherichia coli 53638] gi|190900855|gb|EDV60643.1| general secretion pathway protein GspD [Escherichia coli B7A] gi|192932302|gb|EDV84900.1| general secretion pathway protein GspD [Escherichia coli E22] gi|257766080|dbj|BAI37575.1| predicted type II secretion protein GspD [Escherichia coli O111:H- str. 11128] gi|300402269|gb|EFJ85807.1| general secretion pathway protein D [Escherichia coli MS 84-1] gi|300523438|gb|EFK44507.1| general secretion pathway protein D [Escherichia coli MS 119-7] gi|300840551|gb|EFK68311.1| general secretion pathway protein D [Escherichia coli MS 124-1] gi|306909298|gb|EFN39793.1| general secretion pathway protein D [Escherichia coli W] gi|308122475|gb|EFO59737.1| general secretion pathway protein D [Escherichia coli MS 145-7] gi|309703398|emb|CBJ02737.1| type II secretion system protein D [Escherichia coli ETEC H10407] gi|315062282|gb|ADT76609.1| type II secretion system lipoprotein D [Escherichia coli W] gi|315253339|gb|EFU33307.1| general secretion pathway protein D [Escherichia coli MS 85-1] gi|323178670|gb|EFZ64246.1| general secretion pathway protein D [Escherichia coli 1180] gi|323377134|gb|ADX49402.1| general secretion pathway protein D [Escherichia coli KO11] gi|331062690|gb|EGI34604.1| general secretion pathway protein D [Escherichia coli TA271] gi|331073100|gb|EGI44423.1| general secretion pathway protein D [Escherichia coli H591] Length = 686 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|171060077|ref|YP_001792426.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6] gi|170777522|gb|ACB35661.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6] Length = 726 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 96/299 (32%), Gaps = 45/299 (15%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSI-- 219 + + S ++V ++ QV ++ I E + +G + Sbjct: 421 AYESRTNQLFVSDLPSKLEEVAQMIAKIDVPVRQVMIEARIVEAEDSFGRTLGVKLGATD 480 Query: 220 ----TGSSSGPSKSFA-----------------------------------ADFGGKFVS 240 G G + G + Sbjct: 481 LRGINGGVPGWGGNNTRIALGGNYSSIGDTTLQQATGSIYANSQFVNLPANTSSLGGATA 540 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 S+ G L ALE + ++ P + A G + Y+T + Sbjct: 541 ATFALSLFGASSNRFLNLELSALEAEGKGKLVSSPRVVTADQVKALIEQGTELPYQTGGN 600 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 A S+ + L TP + G I + +V++ +G + + T V Sbjct: 601 QQTAPSIAFRKATLKLEVTPQITPEGNIIMD--VDVNKDSVGQQTLAGFAINTKHVKTQV 658 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +GGT+V+ G+ + + +P+L IP LG LFRN +TE+ + TP ++ Sbjct: 659 LVENGGTVVIGGIFETTETESVNKVPVLGDIPFLGVLFRNKTRVANKTELLVFLTPKVI 717 >gi|209920436|ref|YP_002294520.1| putative type II secretion protein [Escherichia coli SE11] gi|256019113|ref|ZP_05432978.1| putative type II secretion protein [Shigella sp. D9] gi|332280218|ref|ZP_08392631.1| general secretion pathway protein D [Shigella sp. D9] gi|209913695|dbj|BAG78769.1| putative type II secretion protein [Escherichia coli SE11] gi|320201874|gb|EFW76449.1| General secretion pathway protein D [Escherichia coli EC4100B] gi|332102570|gb|EGJ05916.1| general secretion pathway protein D [Shigella sp. D9] Length = 686 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|51243965|ref|YP_063849.1| type II protein secretion protein [Desulfotalea psychrophila LSv54] gi|50875002|emb|CAG34842.1| related to type II protein secretion protein [Desulfotalea psychrophila LSv54] Length = 559 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 58/304 (19%), Positives = 107/304 (35%), Gaps = 36/304 (11%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-------AGEDQVTLKVTIAE 204 ++ ++R ++ S+ + V++ L+ Q+ + I E Sbjct: 256 QSPTATRRYAAGGAMYIIDKPIGLITVSAPRNVLDRLDAYFFSLKKELYKQIAIDAKIIE 315 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRFSFETVLH 261 V IG S G ++G + G F L+ F ++ Sbjct: 316 VTLSDASSIGIDWSNVLGGDGFKLGGKVNYGDATDAIFHNGSGFLDTITLESTDFHVLIK 375 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------------SVTT 309 AL + L+ P L+ ++GQ A + G Y + + T + Sbjct: 376 ALNEQGDTKVLSNPKLSVMNGQPALISVGRSITYISEIEADRDTSSIGTSTITYTTETDS 435 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------------GVNAGDMPSYRVRK 355 G+ L T TVL I + + SE V + +P VR+ Sbjct: 436 LLSGLGLGITATVLDDSEIIMNLVPVTSELVPFKDGEEIEYRQVGDDGASVGLPVLNVRE 495 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 TTV + G T+++ GL+ + +P+L IP L LF ++++ E+ I Sbjct: 496 MSTTVRVKDGETLIIGGLISESNSTTGSSVPILGSIPGLKYLFGYEGKSKQKKELVILIQ 555 Query: 416 PFLV 419 P ++ Sbjct: 556 PRII 559 >gi|193067486|ref|ZP_03048454.1| general secretion pathway protein GspD [Escherichia coli E110019] gi|192959443|gb|EDV89878.1| general secretion pathway protein GspD [Escherichia coli E110019] Length = 686 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|157162438|ref|YP_001459756.1| general secretion pathway protein D [Escherichia coli HS] gi|157068118|gb|ABV07373.1| general secretion pathway protein D [Escherichia coli HS] Length = 686 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|254293816|ref|YP_003059839.1| general secretion pathway protein D [Hirschia baltica ATCC 49814] gi|254042347|gb|ACT59142.1| general secretion pathway protein D [Hirschia baltica ATCC 49814] Length = 660 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 58/291 (19%), Positives = 112/291 (38%), Gaps = 44/291 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKF 238 ++V+ L+ QV ++ I E+ + +++G + ++GS S + A +F Sbjct: 339 ERVVEELDQR-RSQVLVEAIIVELSDNAARELGLEFVLSGSGSSATPFAATNFTRSTTNV 397 Query: 239 VSEGGDFSVKG--------------------------------VLDRFSFETVLHALERA 266 +S G ++ D F +++A++ Sbjct: 398 LSLAGALALDSDTVGEETVSSLRSAAISSLLGSAGGLLGIGGQSSDGTIFGAIINAVDSD 457 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPT 321 L+ P L + + AS T G + T ++S +V GV L P Sbjct: 458 ITSNVLSTPHLLTMDNEKASITVGQEVPITTGEALGTNNSNPFRTVERKPLGVTLEVEPQ 517 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + I L ++ EVS ++ D R+ +TT+ G +VL GL++++ Sbjct: 518 IGEGDSIKLNLRQEVSSIFDSIDGTDF-ITNNREINTTILADDGEIVVLGGLIQEEETLN 576 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 +PLL IP +G LF + ++ T + + P +V+ + R D Sbjct: 577 ISKVPLLGDIPGVGRLFSSEGTTKKRTNLMVFLKPTIVR--DAETMQRATD 625 >gi|76809042|ref|YP_335094.1| type II/III secretion system protein [Burkholderia pseudomallei 1710b] gi|76578495|gb|ABA47970.1| type II/III secretion system protein [Burkholderia pseudomallei 1710b] Length = 575 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 148 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 206 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 207 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 263 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 264 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 323 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 324 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 383 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 384 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 443 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 444 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 500 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 501 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 560 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 561 SELVVYITPTVV 572 >gi|323978963|gb|EGB74043.1| general secretion pathway protein D [Escherichia coli TW10509] Length = 686 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 57/320 (17%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSE---------------------- 241 G Q + + + ++ G + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATIINPDTN 434 Query: 242 ----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|262380438|ref|ZP_06073592.1| general secretion pathway protein D [Acinetobacter radioresistens SH164] gi|262297884|gb|EEY85799.1| general secretion pathway protein D [Acinetobacter radioresistens SH164] Length = 718 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 102/275 (37%), Gaps = 33/275 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228 ++++LL++A + QV ++ I D K++G + I + Sbjct: 445 RMIDLLDVAVK-QVMVEARIVRASTDFTKEMGVKWGILSQGITRNNSLLVGGSETTLWNL 503 Query: 229 ---------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 + D G L F + L AL+ ++ Sbjct: 504 RDPDDEGKYTIERPQNLNVDLGVTAPGASRIAFGLISLSDFMLDLELSALQADGYGEVIS 563 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 P + Q A SG Q Y++ ++ D + L+ TP++ G+I + Sbjct: 564 TPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQML 623 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + S+ + + +T V + +G T+VL G+ + + + + +P+L + Sbjct: 624 LNIT-SDTPGNPTPTGQIAINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGDL 682 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P +G LFR + + E+ I TP +V A + Sbjct: 683 PGVGRLFRRDAKSDNKRELLIFVTPRIVNDSATGN 717 >gi|254180385|ref|ZP_04886983.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655] gi|254190347|ref|ZP_04896855.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur 52237] gi|254261204|ref|ZP_04952258.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a] gi|157938023|gb|EDO93693.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur 52237] gi|184210924|gb|EDU07967.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655] gi|254219893|gb|EET09277.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a] Length = 445 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 18 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 76 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 77 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 133 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 134 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 193 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 194 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 253 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 254 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 313 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 314 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 370 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 371 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 430 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 431 SELVVYITPTVV 442 >gi|90020990|ref|YP_526817.1| Type II secretory pathway component PulD-like protein [Saccharophagus degradans 2-40] gi|89950590|gb|ABD80605.1| type II and III secretion system protein [Saccharophagus degradans 2-40] Length = 546 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 108/258 (41%), Gaps = 23/258 (8%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 ++ + A + QV ++ TI EV Q G S+ + + A V+ Sbjct: 272 LSEIMFASQRQVLIEATIVEVTLSERYQAGIDWSVLQQNVADGVTRTATQDVLDVTLQDP 331 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA-----------SFTSGGQH 293 + + + + AL+ + ++ P + ++ Q+A + + Sbjct: 332 VFTITHVGK-NLSATVKALDTFGDVSVMSSPKVMTLNNQTALLKVVDNLVYFTVDVNIET 390 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIG 342 S++T T V T G V+ TP + G + L I+ +S Sbjct: 391 NESGPSTTTFETEVNTVPIGFVMSVTPFINEFGYVTLNIRPTISRVIGLKRDPNPALAQV 450 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++P +VR+ ++ +++P G ++ GL++D+ + G+P LSKIP++G LF+ + Sbjct: 451 NVVNEIPEIQVREVESVLKIPDGEVAIIGGLMQDEQDNTEHGVPGLSKIPLVGGLFKYTD 510 Query: 403 FNREETEIFIAATPFLVK 420 +++E+ I P +V Sbjct: 511 DKVKKSELVIFIKPIVVD 528 >gi|134096276|ref|YP_001101351.1| fimbrial assembly protein PilQ [Herminiimonas arsenicoxydans] gi|133740179|emb|CAL63230.1| Putative type IV pilus biogenesis secretin PilQ [Herminiimonas arsenicoxydans] Length = 697 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 92/257 (35%), Gaps = 32/257 (12%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------------------GS 222 QV ++ I E +G + + Sbjct: 437 ASRQVMIEARIVEADDKFSSSLGVKLGFGLQRGRNNILEVGGQQNADASAPGLNLTNLQT 496 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 +G + + A ++ L ALE + ++ P + Sbjct: 497 VNGNAVNLPASPLNGNTPGSVALTLFNAAATRFIGLELSALEADGKGKIISSPRVITADQ 556 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A G + Y+ +SS GATSV+ + L TP + G + L +V++ +G Sbjct: 557 LKALIEQGTELPYQQATSS-GATSVSFRKANLRLEVTPQITPDGNVILD--VDVNKDSVG 613 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 V + + T V + +GGT+V+ G+ + + +P IP+LG LF+ + Sbjct: 614 VETRSGFAIDTKHVKTQVLIDNGGTVVIGGIFQQTERDSVSKVPFFGDIPVLGNLFKTTG 673 Query: 403 FNREETEIFIAATPFLV 419 ++TE+ I TP ++ Sbjct: 674 RTNDKTELLIFLTPKIL 690 >gi|254357308|ref|ZP_04973582.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280] gi|148026372|gb|EDK84457.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280] Length = 552 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 125 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 183 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 184 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 240 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 241 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 300 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 301 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 360 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 361 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 420 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 421 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 477 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 478 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 537 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 538 SELVVYITPTVV 549 >gi|221213453|ref|ZP_03586428.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1] gi|221166905|gb|EED99376.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1] Length = 571 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 34/298 (11%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196 +Q L Q ++ +++ NLL + QV Sbjct: 246 ARAQEVQRLLAGATGQRLLSKRGAAAADARTNLLFVTDLAPRIAQIADLIAALDRPSRQV 305 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGG 243 ++ I E + + +G + ++ + AA F + Sbjct: 306 RIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAAASPAGARTALDLAARPLAGFDAATA 365 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F++ + L ALE + ++ P + A G + Y+ G Sbjct: 366 GFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ-AKVGNG 424 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 T V + L P + GR+ L + +V++ +G P+ + T VE+ Sbjct: 425 VTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVD 482 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 483 DGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPTIVSA 540 >gi|239994918|ref|ZP_04715442.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Alteromonas macleodii ATCC 27126] Length = 582 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 110/313 (35%), Gaps = 44/313 (14%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + + ++ V + L + K +N + + QV L+ I EV + Q Sbjct: 250 SPTEGRQVVVSPQAGLVTVRALPSEIAVVKDFLNQSQESLQRQVVLEARIIEVTLNDGYQ 309 Query: 213 IGFQHSITGSSSGPSKSFAADFG------------------------GKFVSEGGDFSVK 248 G + S S +F G G +S Sbjct: 310 QGVRWDRIASGLTGSVNFGFSGGAIASNFAANTAAGIDPAINAVNGIGNSISTDIGGVST 369 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------ 302 + R F+ V++ L+ ++ L+ P +T + Q A G + T S++ Sbjct: 370 LRISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSAT 429 Query: 303 -----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348 +T G+ L TP + G + L + V+E + Sbjct: 430 QTENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLPL 489 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +R++DT + G +V+ GL++ + + PLL IP +G F+N + + Sbjct: 490 AQSNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSKR 549 Query: 409 EIFIAATPFLVKP 421 E+ I P +V+P Sbjct: 550 ELVILIRPSVVQP 562 >gi|218706590|ref|YP_002414109.1| general secretion pathway protein D [Escherichia coli UMN026] gi|300900296|ref|ZP_07118475.1| general secretion pathway protein D [Escherichia coli MS 198-1] gi|331648754|ref|ZP_08349842.1| general secretion pathway protein D [Escherichia coli M605] gi|331664576|ref|ZP_08365482.1| general secretion pathway protein D [Escherichia coli TA143] gi|218433687|emb|CAR14602.1| general secretion pathway protein D precursor [Escherichia coli UMN026] gi|300356186|gb|EFJ72056.1| general secretion pathway protein D [Escherichia coli MS 198-1] gi|331042501|gb|EGI14643.1| general secretion pathway protein D [Escherichia coli M605] gi|331058507|gb|EGI30488.1| general secretion pathway protein D [Escherichia coli TA143] Length = 686 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|53724296|ref|YP_104266.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|52427719|gb|AAU48312.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] Length = 527 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 100 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 158 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 159 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 215 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 216 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 275 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 276 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 335 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 336 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 395 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 396 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 452 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 453 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 512 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 513 SELVVYITPTVV 524 >gi|167740501|ref|ZP_02413275.1| type II/III secretion system protein [Burkholderia pseudomallei 14] gi|167826105|ref|ZP_02457576.1| type II/III secretion system protein [Burkholderia pseudomallei 9] gi|167896189|ref|ZP_02483591.1| type II/III secretion system protein [Burkholderia pseudomallei 7894] gi|167904571|ref|ZP_02491776.1| type II/III secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|167912835|ref|ZP_02499926.1| type II/III secretion system protein [Burkholderia pseudomallei 112] gi|167920795|ref|ZP_02507886.1| type II/III secretion system protein [Burkholderia pseudomallei BCC215] gi|254198490|ref|ZP_04904911.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13] gi|254201342|ref|ZP_04907706.1| type IV pilus secretin PilQ [Burkholderia mallei FMH] gi|147747236|gb|EDK54312.1| type IV pilus secretin PilQ [Burkholderia mallei FMH] gi|169655230|gb|EDS87923.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13] Length = 457 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 30 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 88 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 89 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 145 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 146 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 205 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 206 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 265 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 266 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 325 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 326 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 382 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 383 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 442 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 443 SELVVYITPTVV 454 >gi|269213782|ref|ZP_06158175.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685] gi|269145356|gb|EEZ71774.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685] Length = 327 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 106/269 (39%), Gaps = 32/269 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236 K+++ L++ QV ++ I E + +G + G+ + F + GG Sbjct: 52 KLIDELDVPA-QQVMIEARIVEATDGFARDLGVKFGYGGTERQTAWGFNSGSGGISAANN 110 Query: 237 ----------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + ++ L + L A E+ + +TLA Sbjct: 111 GGTGGNIGTSSGRWSVNTNINLPVAAAANSIALVRALSSGALNLELSASEQLSKTKTLAN 170 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRI 332 P + + Q A SG + Y+ S+S T+ T + L TP + G+I + + Sbjct: 171 PRVLTQNRQEAKIESGTEIPYQDTSTSGNNTTTTTTFKKAVLGLVVTPNITPDGQIIMNV 230 Query: 333 QTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + P V + + DT + +GGT+++ G+ +++ IPLL I Sbjct: 231 KINKDTPIDCRVKNEATKCIQTKNLDTQAMVENGGTLIVGGIYEEENGNTLTKIPLLGDI 290 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P++G LF+ + N+ E+ I TP ++ Sbjct: 291 PVIGNLFKTRQNNQSRRELLIFITPRIMD 319 >gi|281180003|dbj|BAI56333.1| putative type II secretion protein [Escherichia coli SE15] Length = 659 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 289 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 347 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 348 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 407 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 408 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 467 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 468 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 527 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 528 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 585 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 586 KRNLMVFIRPTILRDGMAAD 605 >gi|24371766|ref|NP_715808.1| general secretion pathway protein D [Shewanella oneidensis MR-1] gi|24345556|gb|AAN53253.1|AE015466_13 general secretion pathway protein D [Shewanella oneidensis MR-1] Length = 704 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 106/281 (37%), Gaps = 45/281 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 396 Query: 236 -------GKFVSEGGDFSVKG------------------------VLDRFSFETVLHALE 264 G +++ V G + F ++ A+ Sbjct: 397 WQAQDKEGTYITNPSTGEVIGQNPKTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQAVS 456 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFT 319 T LA P++T + Q ASF G + + ++S +V + GV L Sbjct: 457 ADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 516 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L I+ EVS S+ R+ TTV SG +VL GL+ +++Q Sbjct: 517 PQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEEVQ 574 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P L IPILG LF++S + + + I P +++ Sbjct: 575 ESIQKVPFLGDIPILGHLFKSSSSKKTKKNLMIFIKPTIIR 615 >gi|118579431|ref|YP_900681.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379] gi|118502141|gb|ABK98623.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379] Length = 864 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 17/241 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGK 237 E QV ++ I E + +G + G + + G Sbjct: 621 EKQVMIEARIVEATSTFTRSLGVNWGVHYTDASGSLLGITQLDTGFGGITTAPPTSGTGD 680 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 S + + + L A A I+ ++ P + ++ + A G Q Y Sbjct: 681 SAGGNMGISFGALGNGVQLDMRLSAAATAGLIKIISCPKVATLNNKKAKIAQGQQIPYTA 740 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 T + + L TP + + G I + I + V + P+ ++A Sbjct: 741 SDGDNVETK--FVEAALSLEVTPHINANGTISMNIVAKNDSMGDAVGSSTAPAINTKEAT 798 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + L G T V+ G+ D G+P L IP +G F+ + + +TE+ + TP Sbjct: 799 TEMLLRDGETTVIGGIFVDTDNDSDAGVPFLMDIPAIGKFFKTNSKTKTKTELLVFITPR 858 Query: 418 L 418 + Sbjct: 859 I 859 >gi|1772618|gb|AAC31975.1| HrcC [Erwinia chrysanthemi] Length = 691 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 68/451 (15%), Positives = 138/451 (30%), Gaps = 40/451 (8%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99 G + I++ N + D + V++ A V + + + + G A + Sbjct: 158 TGPTEYINLIRNFSQQRETKEDRRKVMIFPLRYASVSDRTIQYRDQRLVI----PGVATI 213 Query: 100 I--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS--NIRVEMVSDTVVL-------H 148 + L+ + + M + ++ +L Sbjct: 214 LNELMDGNRNTPAGAAGAGSGIGSDGGMATADGAGGGLDASKSIEMNARSMLARLASRNS 273 Query: 149 GMVRTIQDSQRAV--ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAE 204 G + + + +S + + + + L++ Q V + I + Sbjct: 274 GAAASASRKKDQLNGRVSADVRNNALLVRDDEKRRDEYQQLIDKIDVPQNLVNIDAIILD 333 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V R L ++ + + + FVS D F + ALE Sbjct: 334 VDRTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS-----------DFKRFSADIQALE 382 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +A P++ + Q A +V G L TP V+ Sbjct: 383 GEGTASIVANPSVLTLENQPAVIDFSRTAFITAT--GERVANVQPVTAGTSLQVTPRVVG 440 Query: 325 PGRIG-LRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLK 382 G +++ ++ + + N S R T + +VL G ++ Sbjct: 441 HGSTSSIQLVIDIEDGQVETNTEGTASGVKRGTVSTQALIGENRALVLGGFHVEESGDRD 500 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + +PLL IP +G LF + + E TP L+ D+ +DA Sbjct: 501 KRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSADNRRQLNDAMG 560 Query: 443 FFFNRVNK--IYGPKEASEVEGQNYKGAIGF 471 R +K ++G E + + + + GF Sbjct: 561 RVAQRNSKTDLFGTVENALRDLASGQTPAGF 591 >gi|53804514|ref|YP_113593.1| general secretion pathway protein D [Methylococcus capsulatus str. Bath] gi|53758275|gb|AAU92566.1| general secretion pathway protein D [Methylococcus capsulatus str. Bath] Length = 751 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 61/287 (21%), Positives = 113/287 (39%), Gaps = 17/287 (5%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSS---SKKVMNLLNIAGEDQVTLKVTIAEV 205 G ++ + + + + V+ L++ QV + TI E+ Sbjct: 429 GQGASMTQLGNNARVVADPANNALIVIAKPQDWKEIEAVIKALDV-LPLQVLIDATIVEI 487 Query: 206 RRDILKQIGFQHSITGSSSGPSKS-----FAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 Q G + I+ SS + DF S G FS + + + + +L Sbjct: 488 SLKNDLQYGLKWLISSGSSTEALGSPLAALVKDFINGAASASGGFSYALIANGGNVKVLL 547 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDYGV 314 + L + + ++ P+L ++ Q A G Q +T GV Sbjct: 548 NLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTGTTASATIGTTQFNQFQQQQSGV 607 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAG 372 L P V S G + L I +S P +++ R+ + V +P+G T+ L G Sbjct: 608 TLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKTFQFANREIQSVVAVPNGQTLALGG 667 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L+ D + + G+P L++IP++G +F ++ E TE+ + TP +V Sbjct: 668 LISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVV 714 >gi|53720777|ref|YP_109763.1| putative secretion system protein [Burkholderia pseudomallei K96243] gi|52211191|emb|CAH37180.1| putative secretion system protein [Burkholderia pseudomallei K96243] Length = 442 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 15 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 73 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 74 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 130 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 131 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 190 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 191 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 250 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 251 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 310 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 311 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 367 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 368 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 427 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 428 SELVVYITPTVV 439 >gi|332085659|gb|EGI90823.1| putative general secretion pathway protein D domain protein [Shigella dysenteriae 155-74] Length = 303 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 91/247 (36%), Gaps = 23/247 (9%) Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD 244 ++ I EV+ +G Q S + + G S Sbjct: 2 LVEAIIVEVQDGNGLNLGVQWSNKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPA 61 Query: 245 FSVKGVLDR-------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + + + +L AL LA P++ + + ASF G + Sbjct: 62 WDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLS 121 Query: 298 VSSS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 S + +V G L TP V + L I+ EVS N+ P++ Sbjct: 122 GSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNT 181 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + +G T+VL GLL D ++ +PLL IP++G LFR + R + + + Sbjct: 182 RTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVF 241 Query: 414 ATPFLVK 420 P +++ Sbjct: 242 IRPTIIR 248 >gi|323183550|gb|EFZ68947.1| general secretion pathway protein D [Escherichia coli 1357] Length = 686 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|254524408|ref|ZP_05136463.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14] gi|219721999|gb|EED40524.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14] Length = 792 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 66/276 (23%), Positives = 115/276 (41%), Gaps = 30/276 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V++ L+ QV ++ I EV + ++G Q + + F GG ++ G Sbjct: 380 RVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTTGGSGLNTG 438 Query: 243 -------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G ++ GV + + + +AL+ L+ P L + + Sbjct: 439 ARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSRGGANILSTPNLMTLDNE 498 Query: 284 SASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +AS G + + S+ ++ D G+ L P + G + L I E Sbjct: 499 AASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQE 558 Query: 336 VSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VS + R DT+V L G +VL GLL+D + ++ +P L KIP+L Sbjct: 559 VSSIDAQSASSTAGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVL 618 Query: 395 GALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429 GALFR+ R +T + + P +V+ P A + L+R Sbjct: 619 GALFRSDTRKRAKTNLMVFLRPHVVRDPAAGQRLTR 654 >gi|152980977|ref|YP_001355054.1| PilQ type IV pilus assembly protein [Janthinobacterium sp. Marseille] gi|151281054|gb|ABR89464.1| PilQ type IV pilus assembly protein [Janthinobacterium sp. Marseille] Length = 686 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 91/250 (36%), Gaps = 25/250 (10%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----------------------SKS 229 QV ++ I E +G + S + G + + Sbjct: 433 ATRQVMIEARIVEADDKFSSSLGAKLSFGVQNQGNYQLGGRQTSTTTAIGPPTLGGSAVN 492 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 A ++ L ALE + ++ P + A Sbjct: 493 LPASTINSNTPGSVALTLFNAAATRFIGLELSALEADGKGKVISSPRVITADQLKALIEQ 552 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 G + Y+ +SS GATSV+ + L TP + G + L +V++ +GV Sbjct: 553 GTELPYQQATSS-GATSVSFRKANLKLEVTPQITPDGNVILD--VDVNKDTVGVETRSGF 609 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + T V + +GGT+V+ G+ + + +P IP+ G LF+ + ++TE Sbjct: 610 AIDTKHVKTQVLIDNGGTVVIGGIFQQTERDSVSKVPFFGDIPVFGNLFKTTGRTNDKTE 669 Query: 410 IFIAATPFLV 419 + I TP ++ Sbjct: 670 LLIFLTPKIL 679 >gi|170765481|ref|ZP_02900292.1| general secretion pathway protein GspD [Escherichia albertii TW07627] gi|170124627|gb|EDS93558.1| general secretion pathway protein GspD [Escherichia albertii TW07627] Length = 686 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 57/320 (17%), Positives = 111/320 (34%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------------------- 241 G Q + + + G + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPETN 434 Query: 242 ----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|67641888|ref|ZP_00440653.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4] gi|121600460|ref|YP_994488.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|126439652|ref|YP_001060705.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668] gi|126450056|ref|YP_001082319.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|226198301|ref|ZP_03793872.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9] gi|251767786|ref|ZP_02268424.2| type IV pilus secretin PilQ [Burkholderia mallei PRL-20] gi|254174977|ref|ZP_04881638.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|254206684|ref|ZP_04913035.1| type IV pilus secretin PilQ [Burkholderia mallei JHU] gi|121229270|gb|ABM51788.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|126219145|gb|ABN82651.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668] gi|126242926|gb|ABO06019.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|147752226|gb|EDK59292.1| type IV pilus secretin PilQ [Burkholderia mallei JHU] gi|160696022|gb|EDP85992.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|225929821|gb|EEH25837.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9] gi|238522900|gb|EEP86342.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4] gi|243061735|gb|EES43921.1| type IV pilus secretin PilQ [Burkholderia mallei PRL-20] Length = 462 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 35 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 93 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 94 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 150 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 151 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 210 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 211 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 270 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 271 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 330 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 331 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 387 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 388 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 447 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 448 SELVVYITPTVV 459 >gi|107024260|ref|YP_622587.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054] gi|105894449|gb|ABF77614.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054] Length = 371 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 58/297 (19%), Positives = 108/297 (36%), Gaps = 34/297 (11%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197 +Q L Q ++ +++ NLL + QV Sbjct: 47 RAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRITQIAGLIDAIDRPSRQVR 106 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------SFAADFGGKFVSEGGD 244 ++ I E + + +G + ++ P+ AA G F + Sbjct: 107 IEARIVEGEQGFSRNLGARVALRAQGRPPAAEGASFTANARNALDLAARPLGGFDAATAG 166 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F++ + L ALE + ++ P + A G + Y+ G Sbjct: 167 FTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ-AKVGNGM 225 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P + GR+ L + +V++ +G P+ + T VE+ + Sbjct: 226 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVEN 283 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 GGT+ + G+ + + +PLL KIP LGALFR+ + E+ + TP +V Sbjct: 284 GGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQRNELVVFITPTVVDA 340 >gi|307295325|ref|ZP_07575164.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] gi|306878828|gb|EFN10047.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] Length = 412 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 127/320 (39%), Gaps = 23/320 (7%) Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV----MN 186 + RVE+ + VL + + + + + V + Sbjct: 61 YPRAIGRVEVDREG-VLSVAAPSPRSLRLTAIGAGEATVSVFGGDGGLIGREAVRVAPAD 119 Query: 187 LLNIAGEDQVT-LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-- 243 + +QV + V A V LK +GF S + + G GG Sbjct: 120 APVVRAGEQVVAVDVQFAAVSATTLKALGFNFSKLSGDIQGAIVSPSSLGSASFDPGGLS 179 Query: 244 ---------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 F++ VL AL + LA+PTL SG+ ASF +GG+ Sbjct: 180 LEASAPIQNAFNLFLSAPNRGIGAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEFP 239 Query: 295 YKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDM 348 +S + ++GV L TP VLS I L+I EVSE + + + Sbjct: 240 VPVPQASGSGNMLSIQYKEFGVRLSVTPFVLSKDHIVLKIAPEVSELDYANGVQLQGYVV 299 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R R A+TTVEL SG + V+AGL KE P L +P+LGA F+ + +E+ Sbjct: 300 PGLRRRSAETTVELGSGQSFVIAGLSYSSQTVTKEKTPFLGDLPVLGAFFKRQQNQKEKQ 359 Query: 409 EIFIAATPFLVKPVAMRDLS 428 E+ I ATP LV V ++ Sbjct: 360 ELIIVATPRLVTAVKPEEVP 379 >gi|170695725|ref|ZP_02886867.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M] gi|170139330|gb|EDT07516.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M] Length = 581 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 56/296 (18%), Positives = 108/296 (36%), Gaps = 33/296 (11%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196 ++ L +Q ++ ++ NLL + QV Sbjct: 287 ARAEDVRRLLTGSGNQRVLSKRGAVTADPRTNLLFVTDLEGRLAQIAALLASVDRPTRQV 346 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------FGGKFVSEGGD 244 ++ I E + +G + S+ G+S+ + + F + Sbjct: 347 LIEARIVEGEHGFSRNLGVRLSMAGTSADGTTRGLSGGKDGLVADLSARPIAGFDAATAG 406 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ L ALE ++ P + A G + Y+ G Sbjct: 407 LTLFAAGATRLLNIELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQGV 465 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P ++ GR+ L + +V++ +G P+ + T VE+ Sbjct: 466 SGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVED 523 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GGT+ + G+ D + +PLL KIP+LGALFR+ + +E+ + TP +V+ Sbjct: 524 GGTVSIGGIYATDGRDDVTRVPLLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 579 >gi|89899353|ref|YP_521824.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89344090|gb|ABD68293.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 702 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 104/303 (34%), Gaps = 29/303 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + T + + V++ L+ QV ++ I EV D + G Q Sbjct: 348 QIQADVATNSLIITAPEPQYRQLRAVIDRLD-GRRAQVLVESLIVEVNADRAAEFGIQWQ 406 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 +G + +V+ + + + Sbjct: 407 GPLGKAGDGVIGLLGTNFGAAGKNIINLATGAGAVAPGAGLNFGAVQRTNGVYVLGFLAN 466 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------TGATSVTTHDY 312 LE + + L+ P L + + A G + T S + T+V D Sbjct: 467 FLETSGSGNVLSTPNLLTLDNEEAKIVIGENVPFVTGSYTSNNTSGASVNPFTTVERKDV 526 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLA 371 G+ L P + G + + I E S G + P+ R ++TV + G +VL Sbjct: 527 GLTLKVKPQINEDGTVKMVIYQETSAVKAGTEKDANGPTTSKRTIESTVLVDDGSIVVLG 586 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GLL+D ++ +P L +P+ G LF++ R +T + + P +V+ D Sbjct: 587 GLLQDKYSGNQDKVPGLGDVPLFGNLFKSEARTRNKTNLMVFLRPVVVRDAHASD-QLSM 645 Query: 432 DHY 434 D Y Sbjct: 646 DRY 648 >gi|167721530|ref|ZP_02404766.1| type II/III secretion system protein [Burkholderia pseudomallei DM98] gi|167817709|ref|ZP_02449389.1| type II/III secretion system protein [Burkholderia pseudomallei 91] Length = 454 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 27 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 85 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 86 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 142 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 143 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 202 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 203 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 262 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 263 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 322 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 323 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 379 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 380 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 439 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 440 SELVVYITPTVV 451 >gi|324119774|gb|EGC13654.1| general secretion pathway protein D [Escherichia coli E1167] Length = 686 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|323496092|ref|ZP_08101152.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326] gi|323318836|gb|EGA71787.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326] Length = 544 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 114/318 (35%), Gaps = 42/318 (13%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 +++ ++ G +++ + +A + + + + S++ + Q Sbjct: 210 QLQAAVAQLIGSGSGQSVVVTPQASVITVRAYPDEVREVREFLGVSQQ-------RMQRQ 262 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVS 240 V L+ I EV Q G S SS+G + S G + Sbjct: 263 VILEAKILEVTLSDGYQQGINWSKAFSSNGTNYSIGQGSIVKDGNGDILPAVLPGLDAIG 322 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V+ SF+ VL + + L+ P +TA + Q A G Y T S Sbjct: 323 TLLGGQTNLVISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLS 382 Query: 301 S----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 S + +T G+ L TP + G + L + V + V Sbjct: 383 SVVGSGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEIGFGD 442 Query: 351 Y---------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +R++D+ + G +V+ GL+K + +P L +P LG LFRN+ Sbjct: 443 TRITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDVPALGHLFRNT 502 Query: 402 RFNREETEIFIAATPFLV 419 ++TE+ I P +V Sbjct: 503 TKLTQKTELVILLKPTVV 520 >gi|293412339|ref|ZP_06655062.1| general secretion pathway protein D [Escherichia coli B354] gi|293449309|ref|ZP_06663730.1| general secretion pathway protein D [Escherichia coli B088] gi|291322399|gb|EFE61828.1| general secretion pathway protein D [Escherichia coli B088] gi|291469110|gb|EFF11601.1| general secretion pathway protein D [Escherichia coli B354] Length = 679 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 368 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 427 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625 >gi|238025976|ref|YP_002910207.1| type II/III secretion system protein [Burkholderia glumae BGR1] gi|237875170|gb|ACR27503.1| Type II/III secretion system protein [Burkholderia glumae BGR1] Length = 649 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 75/471 (15%), Positives = 150/471 (31%), Gaps = 87/471 (18%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P + P++ + A + ++IS+ L + + V Sbjct: 174 GPPITMPAPVRLSAAPASVHGSHGLHGHRRISLDLQQAPLAAVFDAFAR----------- 222 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH------LEMTLRRFIAD 133 + +++ L G+ G A + L + + + + A Sbjct: 223 --FTGQSIVLSGRVQGAATLRLRDVPWRDAFDALLDANGLAMARRGGVIWVAPVAELAAR 280 Query: 134 SNIRVEMVSDTVVLHGMVR------TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 R E + T L + + A L+ Q ++ + + NL Sbjct: 281 ERARFETHARTAALEPLASRAFVLRYPRAKDVARLLTGGAAGQRVLSRRGSVLADPRTNL 340 Query: 188 LNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----- 224 L + QV ++ I E R +++G + ++ S+ Sbjct: 341 LFVTDLDGRLAQIAALLAQLDRPSRQVLIEARIVEGERGFSRELGARLALRSSAWGGSRA 400 Query: 225 -------------------------GPSKSFAADFGG-----------KFVSEGGDFSVK 248 G + GG F + ++ Sbjct: 401 GAGAGGSGGSDGGAGGAAMPDSNPGGAATGIVGGPGGRLLDLSARPLAGFEAATAGLTLF 460 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + L ALE R ++ P + A G + Y+ G + V Sbjct: 461 VAGASRLLDLELSALEAQGRGRIVSSPRIVTADRAPALIEQGTELPYQ-AKVGLGVSGVQ 519 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + L P + G + L + +V++ +G + P+ + T VE+ +GGT+ Sbjct: 520 FRRATLKLEVEPQITPEGHVVLDL--DVAKDSVGESTDAGPAIHTKHVRTRVEIENGGTV 577 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G+ + D + +P+L KIP+LGALFR+ + E+ + TP +V Sbjct: 578 SIGGIYESDRRDDVTRVPVLGKIPMLGALFRHRARRQRTAELVVYITPRVV 628 >gi|188535320|ref|YP_001909117.1| Putative type II secretion system protein [Erwinia tasmaniensis Et1/99] gi|188030362|emb|CAO98253.1| Putative type II secretion system protein [Erwinia tasmaniensis Et1/99] Length = 384 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 123/322 (38%), Gaps = 21/322 (6%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 +QML L + + + + R+ +V L ++ L Sbjct: 77 EAQEQMLPLFNRSLTLVHADAAAVNTSLQNERTRLMSARGSVTLDSRTNSLLLRDTEKAL 136 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 ++T ++ + L++ Q+ L I + + L+++G ++G + Sbjct: 137 TQT---------------ERWIRQLDVPL-AQIELAAQIVTISEESLREMGVTWGMSGEA 180 Query: 224 SGPSKSFAADF---GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + G LD L ALE +A P L Sbjct: 181 QVSDALRTSQLRVELATGRPAGVAGFTLAKLDGRLLALELSALESEHQADIIASPRLFTS 240 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSE 338 Q+AS G + Y+ + ++G+T++ + + + TP V GRI L I V Sbjct: 241 HQQTASIKQGTEIPYEVSTGNSGSTTMEFKEAMLGMEVTPVVQPNGRILLKLHISQNVPG 300 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + ++ + ++ DT V L G T+ L G+ + + + +P L IP+LGALF Sbjct: 301 RNMRSGENEVLTIDKQEIDTQVILKDGQTLALGGIFQQQSESGRTKVPWLGDIPLLGALF 360 Query: 399 RNSRFNREETEIFIAATPFLVK 420 R+ ++ E+ I TP L++ Sbjct: 361 RHDVRQQKRRELVIFITPRLIR 382 >gi|167847616|ref|ZP_02473124.1| type IV pilus secretin PilQ [Burkholderia pseudomallei B7210] Length = 460 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 33 SSPPAADAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 91 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 92 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 148 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 149 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 208 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 209 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 268 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 269 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 328 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 329 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 385 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 386 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 445 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 446 SELVVYITPTVV 457 >gi|51591323|emb|CAH22989.1| putative outer membrane secretin family protein [Yersinia pseudotuberculosis IP 32953] Length = 455 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85 P E A +++ + +++++ + + + + +V P +A ++ Sbjct: 68 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 123 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 L + G ++ + ++ A +TL A++ + + Sbjct: 124 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 179 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L G + + S A + + T L + A + + L + QV L I + Sbjct: 180 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 235 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262 + L+++G + G G + DF SV + E L A Sbjct: 236 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 294 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE+ + +A P L Q+AS G Y A ++ + + + TP + Sbjct: 295 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 354 Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L G+I L ++ + P I + +M ++ T V + G TIVL G+ + +Q Sbjct: 355 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 414 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 415 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 455 >gi|120600493|ref|YP_965067.1| general secretion pathway protein D [Shewanella sp. W3-18-1] gi|120560586|gb|ABM26513.1| general secretion pathway protein D [Shewanella sp. W3-18-1] gi|319424804|gb|ADV52878.1| general secretion pathway protein D [Shewanella putrefaciens 200] Length = 705 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 103/283 (36%), Gaps = 47/283 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394 Query: 236 ---------------------------------GKFVSEGGDFSVKGVLDRFSFETVLHA 262 + G + + F ++ A Sbjct: 395 WQAQDKEGDTVTTLDGNGNPVTTKNPDTRGDVTLLAQALGKVNGMAWGVAMGDFGALIQA 454 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLH 317 + T LA P++T + Q ASF G + + ++S +V + GV L Sbjct: 455 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLK 514 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + L I+ EVS S+ R+ TTV SG +VL GL+ ++ Sbjct: 515 VVPQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEE 572 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +Q+ + +P L IP+LG LF++S + + + I P +++ Sbjct: 573 VQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIR 615 >gi|146328722|ref|YP_001209267.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A] gi|146232192|gb|ABQ13170.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A] Length = 734 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 87/255 (34%), Gaps = 29/255 (11%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------ 241 QV + + + + + +G + ++ + S + Sbjct: 466 RQVLVDARLVITKDNFARDLGARFGLSFKGTAGSNPIVGSGNLTGTTFYAGMLEEKTIPI 525 Query: 242 ----------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + + + + L AL+ ++ P + G A Sbjct: 526 DNRLGVNLGIASPNVRAPSYGISILGSDVLVDLELQALQNEGRSEVISSPRVVTQDGNQA 585 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 SG + Y G+ + + L TP V R+ + I+ + Sbjct: 586 KVMSGQEIPYS-TLDDKGSVQTDYKEALLSLEVTPRVTPNDRVNMEIEIKKDRVNWSEQV 644 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P+ +T VE+ +G TIVL G+ + + + +PLL IP++G +F+N+ Sbjct: 645 LGQPAIDKNLLNTKVEVANGETIVLGGIYEQEQSLSENKVPLLGDIPVVGNVFKNTNKKF 704 Query: 406 EETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 705 TKNELLIFITPRVID 719 >gi|257485212|ref|ZP_05639253.1| general secretion pathway protein GspD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 619 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + T + + ++V++ L+ QV ++ I EV D Q G Q Sbjct: 267 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 325 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G + G G ++ G+ + + + Sbjct: 326 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 385 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + ++AS G + T +S+ +V + G Sbjct: 386 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 445 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 446 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 505 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L+D Q E +P LS+IP+LG LFRN + +T + + P++++ Sbjct: 506 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 552 >gi|88799076|ref|ZP_01114657.1| Type II secretory pathway, component PulD [Reinekea sp. MED297] gi|88778303|gb|EAR09497.1| Type II secretory pathway, component PulD [Reinekea sp. MED297] Length = 653 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 65/304 (21%), Positives = 113/304 (37%), Gaps = 33/304 (10%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G + E + +++ L+I +QV ++ I EV Sbjct: 298 SGQNEPPSQPISVLADEEQNALIVRAEPSDMKELESIISQLDIP-REQVLIEAAIVEVTG 356 Query: 208 DILKQIGFQH--------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---- 249 + +G Q S++ +G S A G+ +S+ G + Sbjct: 357 NDTDTLGVQWATNPEVVQDGVPFLSVSSEVAGASVGNLAQSVGQGISQAGGSPLGALTSV 416 Query: 250 -----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 +R F + ALE A+ L+ P++ + A T G +KT Sbjct: 417 PAGTFMGLADPFGNRVDFGVAIQALESASNTNFLSTPSILTLDNSEAVITVGNSVPFKTG 476 Query: 299 SSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRK 355 S + D G L P + G I L + V V+ + R+ Sbjct: 477 GSGDEDNPFTIERQDVGTTLTVIPHIQQNGTIRLEVDQIVESVDETVSYDASDVVTKKRQ 536 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V + SG TIVL GL++D + +L+ +P+L IPI+G LF++ + +T + I Sbjct: 537 VTTQVLVNSGETIVLGGLIQDQVSELESRVPVLGYIPIIGHLFKSKSTLKTKTNLLIILK 596 Query: 416 PFLV 419 P ++ Sbjct: 597 PSVI 600 >gi|300973519|ref|ZP_07172233.1| general secretion pathway protein D [Escherichia coli MS 45-1] gi|300410735|gb|EFJ94273.1| general secretion pathway protein D [Escherichia coli MS 45-1] gi|315291309|gb|EFU50669.1| general secretion pathway protein D [Escherichia coli MS 153-1] Length = 681 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 370 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 429 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627 >gi|254281904|ref|ZP_04956872.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium NOR51-B] gi|219678107|gb|EED34456.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium NOR51-B] Length = 729 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 117/302 (38%), Gaps = 31/302 (10%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G R++ ++ +++ + S + AN ++ + + QV ++ I Sbjct: 423 EGASRSMVSARGSIKFDKRTNSIIITDTAANLAAVRDLIEKVDIPIRQVMIEARIVIADS 482 Query: 208 DILKQIGFQHSITGSSSGPSKSFA--------ADFGGKFVSEGG---------------- 243 D+ +G + + G + A + ++ G Sbjct: 483 DLNNSLGVRWGGGYLNRGSDSITSVARGLDDVATLNTQAIAGAGLSYPANPLVDLGIEEG 542 Query: 244 ---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 F++ L ALE + +++P + A+ SG + Y+ ++ Sbjct: 543 GKSGFAIGFTSKDLFLTAELQALEASGQGEIVSQPKVITGDKLPATIKSGTEIPYQEGAA 602 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKAD 357 S GAT+ + + L TP + GRI L + V E V N G +PS + Sbjct: 603 S-GATTTQFKEAVLKLEVTPNITPDGRILLDLVINQDSVGEEVGTPNGGRIPSIDTTELT 661 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V + +G T+VL G+ + D + +P+L IP LG LF+++ + E I TP Sbjct: 662 TQVLVGNGETVVLGGVFQSDERIDVSKVPVLGDIPYLGNLFKSTIKQSIKQETLIFITPR 721 Query: 418 LV 419 ++ Sbjct: 722 IL 723 >gi|157376152|ref|YP_001474752.1| Type II secretory pathway component PulD-like protein [Shewanella sediminis HAW-EB3] gi|157318526|gb|ABV37624.1| Type II secretory pathway component PulD-like protein [Shewanella sediminis HAW-EB3] Length = 696 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 119/243 (48%), Gaps = 14/243 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++ ++I QV L VTIAEV+ + GF+ ++ SSG G G Sbjct: 439 PLVQRMDI-LPKQVLLSVTIAEVKLTGEFKRGFEFAL---SSGNFSGSTKGGLGLDEIVG 494 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G FS K + E + +E + + L++P+L G A+ G + + SSS+ Sbjct: 495 GTFSWKSGAN----EIIGKFVEENSQVNILSKPSLLVRDGTEANINVGDKIPVSSGSSSS 550 Query: 303 G-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356 G ++T + G+ L TPTV + G + + I E+S V+G V G P++ R Sbjct: 551 GSGEVVTENITYRETGIKLTVTPTVNAQGVVIMEINQEISNQVVGPVGKGGNPTFFDRSI 610 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V +G TI+L GL+ DD +G+P L IP++GALF + N +TE+ I TP Sbjct: 611 KTEVVADTGQTILLGGLISDDTTNSNKGVPYLKSIPLIGALFESDSKNNTKTELVIMVTP 670 Query: 417 FLV 419 +V Sbjct: 671 KIV 673 >gi|148555505|ref|YP_001263087.1| general secretion pathway protein D [Sphingomonas wittichii RW1] gi|148500695|gb|ABQ68949.1| general secretion pathway protein D [Sphingomonas wittichii RW1] Length = 682 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 62/275 (22%), Positives = 110/275 (40%), Gaps = 22/275 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 A + + ++ L++ QV ++ I E+ D +Q+ Q I ++ + A Sbjct: 369 GTPAAIAEVEPLIAQLDVRRP-QVLIEAAIVEISGDQAEQLAVQLGIGAAAINRASGGAT 427 Query: 233 DFGG------------KFVSEGGDFSVKGVLD---RFSFETVLHALERATAIRTLAEPTL 277 F + G S G + +F +L A+ ++T L+ P+L Sbjct: 428 SFTSPGLPLQSILTAIGSPAAGAVLSNGGSANIRFGDNFSILLQAIGQSTRSNLLSTPSL 487 Query: 278 TAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 T + + A G ++T S S T++ D G+ L P + + L Sbjct: 488 TTLDNEPAEIVVGQNVPFRTGSFSTDGNTINPFTTIERQDVGLTLRVVPRIHQGNVVRLE 547 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + EVS V R T+V G TIVL GL+ DD Q + +P+L I Sbjct: 548 VAQEVSSLTNAVTGAADLITNRRSIQTSVLADDGQTIVLGGLISDDRTQTRSQVPILGDI 607 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 PI G LFR+ + + + +F+ P +++ + Sbjct: 608 PIAGELFRSRKESHVKRTLFVFLKPTILRDREAAN 642 >gi|1019923|gb|AAA79322.1| S-protein secretion D [Aeromonas hydrophila] Length = 737 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 81/451 (17%), Positives = 156/451 (34%), Gaps = 52/451 (11%) Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISI--------GLNKVIILQVPVDVQDVLVSDP- 74 + +K+A+ A+ + ++I L ++ + + DV S P Sbjct: 253 GPVELVKQASEAISLFDQPALKSSHSLAISPVYSDAEQLGNALMKVLQSEGYDVSDSPPF 312 Query: 75 -TKADVVVHSPRTMYLFGKNVGQAN-----VILIGHDGKQMLNLDI----LIERDIAHLE 124 + + + + +F + V ++ + ++ + + + A + Sbjct: 313 GGVLVLKMKELQRIIVFAAEPRVLSHIRQWVEVLDRESQEKVENGLFIYQVRNTQAAAIA 372 Query: 125 MTLRRFIADSNIRVEMVS--DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L +NI V+ +TV G A + S + + + + Sbjct: 373 TMLGALGYGANIPATGVNSTNTVTATGEQSGAGSLTAASPATSAPTSIAPKGEQGSVVVD 432 Query: 183 KVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 N L G V + V +AEV + + +G S + Sbjct: 433 GNRNALIFKGSGREWVTLRPLLDELDKPVPSVMIDVLLAEVSLNDKEGLGVDWSNIHTDL 492 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G + G G + L+A + P L SG+ Sbjct: 493 GAKDLIMSTANGI----GNSGLNLTLNSAGQTRAKLNAFYENKQAVIRSSPKLMVRSGEE 548 Query: 285 ASFTSGGQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A G + T +S + V GV+L PTV + G + L I E+S Sbjct: 549 ARIEVGNEIPVVTGTSQSTDNPDAPINKTVQYRKTGVILTIKPTVQASGVVDLTISQELS 608 Query: 338 EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 E + D P+ RK +T + L GG+++LAGL+ + G+PLL IP +G Sbjct: 609 EQADTSTSTDALSPTIMNRKVNTALTLRDGGSVMLAGLISSTKGEGDTGVPLLGDIPWIG 668 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +LF++ ++ TE+ + P++++ Sbjct: 669 SLFKSKSNSQNRTELVVMIIPYVLRDFHEAQ 699 >gi|126454219|ref|YP_001067989.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a] gi|242314362|ref|ZP_04813378.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b] gi|126227861|gb|ABN91401.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a] gi|242137601|gb|EES24003.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b] Length = 465 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 38 SSPPAADAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 96 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 97 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 153 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 154 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 213 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 214 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 273 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 274 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 333 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 334 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 390 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 391 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 450 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 451 SELVVYITPTVV 462 >gi|218708368|ref|YP_002415989.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32] gi|218321387|emb|CAV17337.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32] Length = 554 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 120/320 (37%), Gaps = 44/320 (13%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 ++E+ ++ G +++ + +A + + + + S+K + Q Sbjct: 218 QLEVAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIREVREFLGISQKRLQR-------Q 270 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVS 240 V L+ I EV Q G + SS+G + + G + Sbjct: 271 VILEAKIMEVTLSDGYQQGINWTKMFSSNGTNYTVGMGSIVKNAAGTIIPGTLPGMDPIG 330 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V+ SFE VL ++ + L+ P +TA + Q A G Y T S Sbjct: 331 AALGGQSNLVVSGGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTELS 390 Query: 301 ST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 S+ +T G+ L TP + G + L + V E V ++ S Sbjct: 391 SSVGSGDNANVAPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGS 450 Query: 351 Y-----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +R++D+ + G +V+ GL+K + + +P L IP LG LFR Sbjct: 451 TTGIVKLPLAKSSIRESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFR 510 Query: 400 NSRFNREETEIFIAATPFLV 419 N+ ++TE+ I P +V Sbjct: 511 NTSQLTQKTELVILLKPTIV 530 >gi|90580158|ref|ZP_01235965.1| MSHA biogenesis protein MshL [Vibrio angustum S14] gi|90438460|gb|EAS63644.1| MSHA biogenesis protein MshL [Vibrio angustum S14] Length = 548 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 114/306 (37%), Gaps = 33/306 (10%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 V+ GM+ + V +S + + + + QV L+ I EV Sbjct: 220 VVSGMIGSGDGRNVMVSPQAGLISVRAFPNELREVKE-FLGMSQRRLKRQVVLEAKIMEV 278 Query: 206 RRDILKQIGFQHSITGSSSGPSK------------SFAADFGGKFVSEGGDFSVKGVLDR 253 + Q G + SS G + + + GG +SE + Sbjct: 279 TLNDSYQQGIDWNNLTSSIGGTGIIVNEMKDAANAAASILPGGNAISELLGGQTNIKITD 338 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------G 303 +F V+ L + L+ P +TA + Q A GG + T SS+ Sbjct: 339 GNFSAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNNVSP 398 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS----------YRV 353 S+T G+ L TP + G + L + V + ++ + + Sbjct: 399 DVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNEQKTIEVGTAKPMVLPLAKSTI 458 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R++D+ + +G +V+ GL+K I +P L IP +G LFR+ +++TE+ I Sbjct: 459 RESDSIIHARTGDVVVIGGLMKSSINDQVSKVPFLGDIPGIGNLFRHINKVKKKTELVIL 518 Query: 414 ATPFLV 419 P +V Sbjct: 519 LKPTVV 524 >gi|167044898|gb|ABZ09565.1| putative bacterial type II and III secretion system protein [uncultured marine crenarchaeote HF4000_APKG8D22] Length = 637 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 96/250 (38%), Gaps = 18/250 (7%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------- 234 + +L+I+ QV ++ I E+ + +++G + G Sbjct: 388 IKILDISTP-QVLIEAKIVEISKTFSQELGISWGLVNPEPGFPTVTGNSTFDTQFLVDLR 446 Query: 235 -----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 V+ + + L ALE++ R ++ P +T + A S Sbjct: 447 PTVDIATGNVAGFDSLIQGFLPGNIALNVRLEALEKSGKGRVISSPRVTTADNKEARVLS 506 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 G Y+ S S+ + + L TP V S I + I + A +P Sbjct: 507 GRDIPYQVNSVEG--NSIQFVNAELSLTVTPHVTSDNSIYMTIDATKNAADFAQLAAGIP 564 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + ++ T V + +G T VLAG+ + + K+ +P SK+P++G LFR E Sbjct: 565 TITRKEMHTEVLVGNGETTVLAGIYESTSTENKKAVPWFSKLPLVGFLFRAFDDKDTINE 624 Query: 410 IFIAATPFLV 419 + + TP +V Sbjct: 625 LLVFITPTIV 634 >gi|217424883|ref|ZP_03456380.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576] gi|217392339|gb|EEC32364.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576] Length = 459 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 32 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 90 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 91 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 147 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 148 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 207 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 208 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 267 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 268 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 327 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 328 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 384 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 385 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 444 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 445 SELVVYITPTVV 456 >gi|237814100|ref|YP_002898551.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346] gi|237503013|gb|ACQ95331.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346] Length = 552 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + A + G + ISI L + + V Sbjct: 125 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 183 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 184 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 240 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + G V + L Q ++ + + NLL + Sbjct: 241 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 300 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 301 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 360 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA F + ++ + L ALE + ++ P + A Sbjct: 361 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 420 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 421 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 477 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 478 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 537 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 538 SELVVYITPTVV 549 >gi|15836975|ref|NP_297663.1| fimbrial assembly protein [Xylella fastidiosa 9a5c] gi|9105203|gb|AAF83183.1|AE003888_16 fimbrial assembly protein [Xylella fastidiosa 9a5c] Length = 637 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 99/265 (37%), Gaps = 29/265 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231 DQV ++ I + +G + + +S + Sbjct: 370 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSHVTTADSSTSATRGLN 429 Query: 232 ---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 S + + +F+ + L AL++ + ++ P + + + Sbjct: 430 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 489 Query: 289 SGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341 G + Y T V+ +V + + L TPT+ + R+ L + E+ + + Sbjct: 490 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 549 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+ Sbjct: 550 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 609 Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426 ++++ E+ I TP +++ Sbjct: 610 GKDKQKAELLIFVTPKVLRVANATA 634 >gi|114561293|ref|YP_748806.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB 400] gi|114332586|gb|ABI69968.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB 400] Length = 710 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 102/283 (36%), Gaps = 47/283 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I E+ G Q + G Sbjct: 339 ESVINQLDIR-RAQVLVEAIIVEIAEGDNVGFGVQWGSEAGGLTQFNNIGPTIGEVGAGV 397 Query: 236 -------GKFVSEGGDFSVKGVLDR--------------------------FSFETVLHA 262 G V+ G +F ++ A Sbjct: 398 WSARETDGTTVTVGNSDGGSTTTTNPTSDGDYTLIAQALGKVNGMAWGVTTGNFAALIQA 457 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLH 317 + T LA P++T + Q ASF G + T ++ +V + GV L Sbjct: 458 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPIITGSTSSSNNDNPFQTVERKEVGVKLK 517 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + L I+ EVS S+ R+ TTV SG +VL GL+ ++ Sbjct: 518 VVPQINEGSSVKLTIEQEVSGVNGNTGVD--ISFSTRRLTTTVMADSGQIVVLGGLINEE 575 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +Q+ + +P+L IP +G LF++S + + + I P +++ Sbjct: 576 VQESIQKVPILGDIPFIGHLFKSSSSKKTKKNLMIFIKPTIIR 618 >gi|223040615|ref|ZP_03610885.1| type II and III secretion system protein [Campylobacter rectus RM3267] gi|222878073|gb|EEF13184.1| type II and III secretion system protein [Campylobacter rectus RM3267] Length = 513 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 112/311 (36%), Gaps = 35/311 (11%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 +L+ +I + + ++ +G S + + + QV + V+I Sbjct: 181 KAILNNTTESIVAPDPIINANAGLVTVTGTAAQLRRVSD-YIKDIQERLKKQVIIDVSIV 239 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------- 252 V G S + + S GG + + Sbjct: 240 SVELANSYTKGIDWSKFSIGFKTGFANGIPLFSEQNSNGGSLTWSNRGNSFSRGFNRELS 299 Query: 253 -----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------ 301 F+ + VL+ LE + ++ P +T ++ Q A + G Y+ S Sbjct: 300 LLSGFNFNLDGVLNFLETNGKTKVISSPKITTLNNQQALISVGDNVNYRVQEESQNNNSL 359 Query: 302 TGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MP 349 G T++T Y G++L+ P V +I LRI +S + P Sbjct: 360 NGKTTITYKQYSVFIGILLNILPEVSDDNKIMLRINPSLSSFKYNEDDVRQSTKIREIAP 419 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +K T V++ SG TIVL GL+ + +P L IP+ G F++++ N TE Sbjct: 420 DTIQKKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLGDIPVFGNAFKSTKDNIRTTE 479 Query: 410 IFIAATPFLVK 420 + TP +V Sbjct: 480 LVFIITPRIVD 490 >gi|330501497|ref|YP_004378366.1| type 4 fimbrial biogenesis outer membrane protein PilQ [Pseudomonas mendocina NK-01] gi|328915783|gb|AEB56614.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas mendocina NK-01] Length = 704 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 48/307 (15%), Positives = 114/307 (37%), Gaps = 34/307 (11%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVT 201 + G T++D R + + + + +++ L+I QV ++ Sbjct: 390 KLYEEGSSGTLKDDMRGSVIYDDRTNSLIVTLTQERIDELRRIVTQLDIPVR-QVMIEAR 448 Query: 202 IAEVRRDILKQIGFQHSIT------GSSSGPSKSFA----------------------AD 233 I E D K +G + ++ G + + Sbjct: 449 IVEANVDYDKALGVRWGGNFWVGDKWNAWGKNGNLGVEENEDGGQVGRFPGDRQTPVNTP 508 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F V+ + V + + L A+E++ + +++P + ++A G + Sbjct: 509 FVDLGVAGTSGIGIGFVTNNTILDMQLSAMEKSGSGEVVSQPKVVTSDKETAKILKGTEV 568 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSY 351 Y+ SSS ++ + + + L TP + R+ + ++ + + + G +P+ Sbjct: 569 PYQESSSSGATST-SFKEAALSLEVTPQITPDNRVLMEVKVTKDAPDFSVTSSTGGIPAI 627 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + + V + G TIV+ G+ + + + +P L +P +G +FR + E+ Sbjct: 628 NKNEVNAKVLVADGETIVIGGVYSNTQSKSVDKVPFLGDLPFVGRVFRRDLVQDRKAELL 687 Query: 412 IAATPFL 418 + TP + Sbjct: 688 VFLTPRI 694 >gi|237807143|ref|YP_002891583.1| general secretion pathway protein D [Tolumonas auensis DSM 9187] gi|237499404|gb|ACQ91997.1| general secretion pathway protein D [Tolumonas auensis DSM 9187] Length = 685 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 31/279 (11%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 ++++ L+I QV ++ I E++ G Q + T + Sbjct: 342 TAQPDVMQELERIIAKLDIR-RAQVLVEAIIVEIQDGDTLNFGVQWANTNGGGTQFTATG 400 Query: 232 ADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + ++ ++ AL T LA Sbjct: 401 LPTTTVANAANEWRNDGELSSTSTAALSSFNGLVAGFYEGNWAGLVTALSSNTKSNILAT 460 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGL 330 P++ + + A+F G + T S S+ ++V G L TP + + L Sbjct: 461 PSIVTLDNKEAAFNVGQEVPVVTGSQSSTAGSVYSTVERKTVGTKLKVTPQINEGDSVLL 520 Query: 331 RIQTEVSEPVIGVNAGDMP---------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 ++ EVS + ++ R +V + SG T+VL GLL ++ + Sbjct: 521 EVEQEVSSVASSSSTDSSSSSSNSSLGSTFNTRTVKNSVLVKSGETVVLGGLLSNNTSES 580 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +PLL IPILG LFR + + + + + P +++ Sbjct: 581 VYKVPLLGDIPILGYLFRYNGTSTTKQNLMVFIHPTILR 619 >gi|163857177|ref|YP_001631475.1| general secretion pathway protein D [Bordetella petrii DSM 12804] gi|163260905|emb|CAP43207.1| general secretion pathway protein D [Bordetella petrii] Length = 862 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 63/273 (23%), Positives = 104/273 (38%), Gaps = 30/273 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSE 241 +V++ L+ QV ++ I EV ++ + G Q + GS G + GG + Sbjct: 408 EVIDQLDQR-RAQVLVESLIVEVSQEKAAEFGIQWMTGAGSLDGSGFIGGTNLGGSGIGS 466 Query: 242 GGDFSVKGVLDRFSFETVL-------------------HALERATAIRTLAEPTLTAISG 282 G + L AL+ + L+ P L + Sbjct: 467 AGTGATTLDALGRGLTLGLVKGTVDVLGNQVINLNVLARALQNSGEANILSTPNLLTLDN 526 Query: 283 QSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + AS G + T S+ ++ D G+ L+ P + G + L I Sbjct: 527 EPASILVGKTVPFVTGQYVTSGSAGSNNPFQTIEREDIGLKLNIRPQISEGGAVKLDIYQ 586 Query: 335 EVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 EVS ++ R DT+V + G IVL GLL+D + +P LS IP+ Sbjct: 587 EVSSIDEASSSETTGLVTNKRAIDTSVLVDDGQIIVLGGLLEDRVTSTTSAVPGLSSIPL 646 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LGALFR + R ++ + + PF+V+ Sbjct: 647 LGALFRYDKRQRTKSNLMVFLRPFVVRDARDSA 679 >gi|114331780|ref|YP_748002.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91] gi|114308794|gb|ABI60037.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91] Length = 720 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 104/264 (39%), Gaps = 39/264 (14%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKF 238 QV ++ I E + +G + + ++ + +++ Sbjct: 448 TQVRQVMIETRIVEATDTFSRNLGARFGVQNATRIGSQTNGRRLGISGNLGNSSELAAGT 507 Query: 239 VSEGGD-----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEP 275 +S G S+ + + L ALE + R +A P Sbjct: 508 ISPSGGDNLNVNLPAAALAGVAGGPAALGLSLIKINNGTLINLELSALESDSQGRIIASP 567 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L + AS G + ++T+S + + + L TP + I +++ + Sbjct: 568 RLVTANRVEASIEQGTEIPFQTISVT--RPQIQFKKAVLGLKVTPQITPDDNIIMKL--Q 623 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V++ G + P+ ++ T V + +GGT+V+ G+ + ++ + IPLL +P+LG Sbjct: 624 VNQDTRGESTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEKRDRNQIPLLGDVPLLG 683 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF+N+ ++ E+ I TP ++ Sbjct: 684 NLFKNTAKRDDKRELLIFVTPRIL 707 >gi|163849487|ref|YP_001637530.1| general secretion pathway protein D [Methylobacterium extorquens PA1] gi|163661092|gb|ABY28459.1| general secretion pathway protein D [Methylobacterium extorquens PA1] Length = 794 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 120/291 (41%), Gaps = 21/291 (7%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIG 214 + A+ + + S + K++ +L A QV L+ IAEV + Q G Sbjct: 463 RRDAIGVVADEANNSLVISATRNQYDKILRILGRLDAMPTQVLLETVIAEVTLNNELQFG 522 Query: 215 FQHSITGS-----------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 Q + S + ++ + + G +L+ F VL+AL Sbjct: 523 VQWFLKNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNAL 582 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVL 316 + T + ++ P +T + ++A G Q S + + D GV+L Sbjct: 583 QGVTRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVIL 642 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 TP V G + L I EVS+ V + + P+ R R+ T+V + G ++ + G+++ Sbjct: 643 SVTPRVNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQ 702 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + Q E +PLL +PI+G FRN R TE+ + P +++ D Sbjct: 703 EKAQITNESVPLLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEAD 753 >gi|121607022|ref|YP_994829.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2] gi|121551662|gb|ABM55811.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2] Length = 712 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 65/350 (18%), Positives = 127/350 (36%), Gaps = 46/350 (13%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 + + L + + + G T S+R ++E +Q A Sbjct: 366 QRLEPLRTQAYQLNYAKASDILTQLNASGGAGGSSTRFLSERGSAIAEPRTNQLFVTDTA 425 Query: 178 NSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------- 221 + + +++ L++A QV ++ I E R + +G + T Sbjct: 426 SKQEEVRQLLARLDVAVR-QVMIEARIVEARDSFGRSLGVRLGSTDLSASRKGTGGYGIG 484 Query: 222 ---------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE--------- 257 +SG + S A D GG FV+ S + F+ Sbjct: 485 GNKRVAYGTSYSDAVKASGANGSTAPDTGGNFVNLPASLSSVNTVGSFALSIFNAATNKF 544 Query: 258 --TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 L A+E R ++ P + A G ++ Y V++ GAT++ + Sbjct: 545 LTLELSAMEADGKGRIVSSPRIITADQTKALIEQGTEYPY-AVTAPNGATTLAFKKAVLK 603 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L +P + G I L +VS+ G + + T + + +GGT+V+ G+ + Sbjct: 604 LEVSPQITPEGNIILD--LDVSKDSRGETTSQGVAIDTKHIKTQILIENGGTVVIGGIFE 661 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + + IP L +P++G LF++ + E+ I TP ++ + Sbjct: 662 MEETSQENKIPFLGDVPVVGNLFKSKTKETTKREMLIFITPKVIADSGPK 711 >gi|293406579|ref|ZP_06650505.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412] gi|291426585|gb|EFE99617.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412] Length = 679 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 368 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 427 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625 >gi|167587730|ref|ZP_02380118.1| type IV pilus secretin PilQ [Burkholderia ubonensis Bu] Length = 499 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 107/295 (36%), Gaps = 34/295 (11%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197 +Q L Q ++ +++ N L + QV Sbjct: 175 RAQDVQRLLTGAAGQRLLSKRGAAAADSRTNQLFVTDLAPRIAQIAGLIDAIDRPSRQVR 234 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------------FAADFGGKFVSEGGD 244 ++ I E + + +G + ++ + AA G F + Sbjct: 235 IEARIVEGEQGFSRNLGARLALRARERAAAADGAAFAAGARNALDLAARPLGGFDAATAG 294 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F++ + L ALE + ++ P + A G + Y+ G Sbjct: 295 FTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKAIVEQGAELPYQ-AKVGNGV 353 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P + GR+ L + +V++ +G P+ + T VE+ Sbjct: 354 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVED 411 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GGT+ + G+ + + +PLL KIPILGALFR+ + +E+ + TP +V Sbjct: 412 GGTVAIGGIYEQLRRDDVTRVPLLGKIPILGALFRHRAQRDQRSELVVFITPTVV 466 >gi|34496284|ref|NP_900499.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum ATCC 12472] gi|34102137|gb|AAQ58504.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum ATCC 12472] Length = 697 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 26/258 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231 QV ++ I E + + +G + + S Sbjct: 440 KQVLIEARIVEATDNWERDLGIKLTYDRMDPKGIISGNPLGTNVNNVTNLNNNQPYVIQT 499 Query: 232 --ADFGGKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 A + G S + L A++ R ++ P + Q AS Sbjct: 500 TPAGVNLPIATPYGTLSALYNVGHSVILGLELQAMQAEDKGRIISSPRVMTADRQEASIE 559 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 G + Y+ SS+GATSV+ + L+ P + + + I Sbjct: 560 QGTEIPYQEA-SSSGATSVSFKKAVLRLNVKPQITPDNHVIMDITVNKDSANFEKTVNGT 618 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS K T V + +GGT+VL G+ + + + +P L IP+LGALFR+S+ + + Sbjct: 619 PSLSTEKIITQVLVENGGTVVLGGIYQQQLNDVINKVPFLGDIPLLGALFRSSQKIDKRS 678 Query: 409 EIFIAATPFLVKPVAMRD 426 E+ I TP ++ + Sbjct: 679 ELLIFITPKVINDLVAES 696 >gi|120612787|ref|YP_972465.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1] gi|120591251|gb|ABM34691.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1] Length = 829 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 20/248 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-----------VSE 241 QV ++ +I EV D Q G Q + + Sbjct: 535 PTQVLIEASIVEVTLDDTLQYGLQWAFNNAGPSNLNGAGQLLTNGPSDKTPIGSSIPTPT 594 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299 FS S VL+AL ++ ++ P+L + +A + G Q KT S Sbjct: 595 SSGFSYALSNSLGSVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTGSLI 654 Query: 300 -----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYR 352 ++ A ++ D GV L TP+V + + ++I V++ V + P ++ Sbjct: 655 TSVSGGNSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGSISLQPVFQ 714 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ + V + SG IVL GL++D K G+PLL IP++G+LF N+ TE+ + Sbjct: 715 QRQITSKVAVRSGEAIVLGGLIRDTSNSSKSGVPLLQDIPLVGSLFSNNGKTGNRTELLV 774 Query: 413 AATPFLVK 420 TP +V+ Sbjct: 775 VITPKVVR 782 >gi|330831366|ref|YP_004394318.1| MSHA biogenesis protein MshL [Aeromonas veronii B565] gi|328806502|gb|AEB51701.1| MSHA biogenesis protein MshL [Aeromonas veronii B565] Length = 557 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 101/258 (39%), Gaps = 31/258 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------FGGKFVSEGG 243 + QV L+ I EV + + G S +S +K + Sbjct: 276 KRQVVLEARIIEVALNEGYEQGVDWSGLSASWDGNKGITGGQSLANTQLPSTPNQIFSAL 335 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST- 302 + +F ++ L+ + TL+ P +TA + Q A G Y T +S+T Sbjct: 336 GGGAGFKISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYYVTNASTTI 395 Query: 303 ----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY- 351 +T G+ L TP + G++ L I V + DM + Sbjct: 396 TTTSTGTDKTPNVELTPFFSGIALDVTPQIDEEGKVLLHIHPSVIDTEEQNKVIDMGTSG 455 Query: 352 ----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +R++DT V+ +G IV+ GL+K D Q++ +PLL IP +G F N Sbjct: 456 GKLQLPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPWVGEAFTNR 515 Query: 402 RFNREETEIFIAATPFLV 419 R + ++ E+ I P +V Sbjct: 516 RESTKKVELVIMLKPTVV 533 >gi|88866562|gb|ABD57336.1| TapQ [Aeromonas salmonicida subsp. salmonicida A449] Length = 730 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 63/303 (20%), Positives = 114/303 (37%), Gaps = 30/303 (9%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 +L + ++ AV + E ++ S+ K M + QV ++ + + Sbjct: 425 LLSPRTPSCFSARGAVSVDERTNVLVVKDTADVISNIKPMLDILDIPVKQVVIEARMVTI 484 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------------DFGGKF 238 + +G + +T + + + + + Sbjct: 485 DDGFDEALGVRWGVTKNDGHGNSTSGSIEGNDGSGNNNGGSAITRPGVEDRMNVNLPVTN 544 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + F V + D + L ALE+ + +A P +T + + A G + Y Sbjct: 545 AAGTLAFQVARLADGTLLDLELSALEKESKAEIIASPRVTTANQKPALIEQGTEIPYVES 604 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKA 356 SS+GATSVT + L TP + R+ L + + GD S + Sbjct: 605 -SSSGATSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDAVSINAQSI 663 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V + +G T+VL G+ + I+ +PLL IP LG LFR + ++ E+ I TP Sbjct: 664 TTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSENKKRELLIFVTP 723 Query: 417 FLV 419 +V Sbjct: 724 KIV 726 >gi|37681131|ref|NP_935740.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016] gi|37199882|dbj|BAC95711.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016] Length = 547 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 65/304 (21%), Positives = 112/304 (36%), Gaps = 34/304 (11%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 ++ G +++ + +A ++ R ++ + + + QV L+ I Sbjct: 226 GLIGSGKGQSVVVTPQAGVITVRAFPDEIREV------RQFLGISQERMQRQVILEAKIL 279 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-------DFSVKGVLDRFSF 256 EV Q G S +S G S S + G V G + SF Sbjct: 280 EVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLPGLDAIGSLLGGQTNVTISDGSF 339 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306 E VL + + L+ P +TA + Q A G Y T SS + Sbjct: 340 EAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQYYVTALSSNVGNDDKSKAVPEVT 399 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355 +T G+ L TP + G + L + V E ++ +R+ Sbjct: 400 LTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETKQLNLGGDFQNVTLPLAKSSIRE 459 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +D+ + G +V+ GL+K + + +P IP LG LFRN+ ++TE+ I Sbjct: 460 SDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGDIPALGHLFRNTSNLTQKTELVILLK 519 Query: 416 PFLV 419 P +V Sbjct: 520 PTVV 523 >gi|254300620|ref|ZP_04968065.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e] gi|157810585|gb|EDO87755.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e] Length = 455 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 79/428 (18%), Positives = 146/428 (34%), Gaps = 38/428 (8%) Query: 24 AKLPPIKEANAAVINISDVEI-GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82 + + A+V + G + ISI L + + V V Sbjct: 31 SPPAAGAVSTASVAGTGTGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSERVR 89 Query: 83 SPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141 ++ L A L+ G ++ +A L R+ D++ RV + Sbjct: 90 GTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF-DAHARVAQL 148 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA---------- 191 + + G V + L Q ++ + + NLL + Sbjct: 149 -EPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRLAQIA 207 Query: 192 --------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFA 231 QV ++ I E R + +G + I +G A Sbjct: 208 DLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELA 267 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 A F + ++ + L ALE + ++ P + A G Sbjct: 268 ARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGA 327 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 + Y+ G + V + L P + GR+ L + +V++ +G P+ Sbjct: 328 ELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAI 384 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 385 HTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELV 444 Query: 412 IAATPFLV 419 + TP +V Sbjct: 445 VYITPTVV 452 >gi|117918609|ref|YP_867801.1| general secretion pathway protein D [Shewanella sp. ANA-3] gi|117610941|gb|ABK46395.1| general secretion pathway protein D [Shewanella sp. ANA-3] Length = 702 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 61/281 (21%), Positives = 106/281 (37%), Gaps = 45/281 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKADGGTQFNNLGPTIGEIGAGI 394 Query: 236 -------GKFVSEGGDFSVKG------------------------VLDRFSFETVLHALE 264 G +++ V G + F ++ A+ Sbjct: 395 WQAQDKEGTYITNPSTGEVIGKNPDTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQAVS 454 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFT 319 T LA P++T + Q ASF G + + ++S +V + GV L Sbjct: 455 ADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 514 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L I+ EVS S+ R+ TTV SG +VL GL+ +++Q Sbjct: 515 PQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEEVQ 572 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P L IP+LG LF++S + + + I P +++ Sbjct: 573 ESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIR 613 >gi|71276554|ref|ZP_00652828.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Dixon] gi|71901093|ref|ZP_00683201.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] gi|170730937|ref|YP_001776370.1| fimbrial assembly protein [Xylella fastidiosa M12] gi|71162625|gb|EAO12353.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Dixon] gi|71729136|gb|EAO31259.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] gi|167965730|gb|ACA12740.1| fimbrial assembly protein [Xylella fastidiosa M12] Length = 630 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 99/265 (37%), Gaps = 29/265 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231 DQV ++ I + +G + + +S + Sbjct: 363 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTTADSSTSATRGLN 422 Query: 232 ---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 S + + +F+ + L AL++ + ++ P + + + Sbjct: 423 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 482 Query: 289 SGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341 G + Y T V+ +V + + L TPT+ + R+ L + E+ + + Sbjct: 483 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 542 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+ Sbjct: 543 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 602 Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426 ++++ E+ I TP +++ Sbjct: 603 GKDKQKAELLIFVTPKVLRVANATA 627 >gi|308274907|emb|CBX31506.1| hypothetical protein N47_E50180 [uncultured Desulfobacterium sp.] Length = 718 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 78/454 (17%), Positives = 153/454 (33%), Gaps = 59/454 (12%) Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV--- 80 N +I S + I K I +++ I ++P V S T A +V Sbjct: 159 GLASVFGPGNMLLIIDSGINIRKIASIIESIDQPYIGEMPEIVYLKYASAETVAKMVNEN 218 Query: 81 VHSPRTMYLFGKNVGQANVILIGHD-GKQMLNLDILIERDIAHLEMTLRRFIADS----N 135 ++ + L G + +L D I+ + L ++ N Sbjct: 219 INRGQREVLSQAMPGNTGKAVAEQRLNAVLLFGDKSIKESMHSFISLLDVRSPEAHGMIN 278 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----- 190 + +D V L +++ + + ++ + + +S ++ K N L + Sbjct: 279 VYFMENADAVELAKVLQDLVKAGQSKQPAAA-MSVFETAGGIAITADKASNALVVVATPA 337 Query: 191 -------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------PSKSFA 231 QV ++ IAEV D L ++G + + +G + Sbjct: 338 DYQNLQQIIKKLDKRRKQVFVEAMIAEVSIDKLLELGSKWRAAVTRNGEPIFVGGVGTVD 397 Query: 232 ADFGGKFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAE 274 A +S ++ G+ + F + + A+ L+ Sbjct: 398 AATVNSILSGMTGLTLGGMSNYFTVPQTFVAGGTSDIKVPGITALFSMSDFKDAVNVLST 457 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGVVLHFTPTVLSPGRI 328 P + A G T+ + D G++L P + + Sbjct: 458 PQILTSDNMEAEILVGENIPLILNRERDVTTTSTVLTSIERKDVGILLKIKPQINEGEYV 517 Query: 329 GLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L I E+S G P+ R T+V + T+V+ GL+++ ++ I Sbjct: 518 KLDIYQEISAQKAGSENVITSIGPTMTKRSTKTSVAVKDKQTVVIGGLMQERDEESITKI 577 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 PLL IP LG LF+ +R +T + + TP+++ Sbjct: 578 PLLGDIPGLGWLFKYRSISRAKTNLLVFLTPYII 611 >gi|86149355|ref|ZP_01067586.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596641|ref|ZP_01099878.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 84-25] gi|218563075|ref|YP_002344854.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840137|gb|EAQ57395.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191482|gb|EAQ95454.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 84-25] gi|112360781|emb|CAL35581.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926681|gb|ADC29033.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni IA3902] gi|315927422|gb|EFV06760.1| Pilus biogenesis protein MshL [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929011|gb|EFV08254.1| General secretory pathway protein D [Campylobacter jejuni subsp. jejuni 305] Length = 472 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S K + L + QV + V+I V + G + Sbjct: 193 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIGLNSQVNNE 252 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F +F + G G+ +F+++++ L + L+ P L A++ Q A + G Sbjct: 253 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 311 Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Y+ SS G + TT G++L+ P + G+I LRI +S+ Sbjct: 312 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 371 Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + P +K + V++ + T++L GL+ D K I LSKIPILG Sbjct: 372 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 431 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +LF+ N + TEI TP +V V L Sbjct: 432 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 463 >gi|229589906|ref|YP_002872025.1| putative type II secretion pathway protein D [Pseudomonas fluorescens SBW25] gi|229361772|emb|CAY48654.1| putative type II secretion pathway protein D precursor [Pseudomonas fluorescens SBW25] Length = 770 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 104/270 (38%), Gaps = 28/270 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------SSSGPSK 228 +V+++L+ QV ++ I EV D + G Q S + Sbjct: 441 EVIDMLDQR-RAQVVIESLIVEVGEDDATEFGVQWQAGNLAGKGGFGGVNLGGSGVNSTP 499 Query: 229 SFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + G G + G+ + + AL+ L+ P L + + Sbjct: 500 TSKTSIDVLPKGLNVGLVNGTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNE 559 Query: 284 SASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +AS G + T +S+ +V + G+ L+ P + G + L I E Sbjct: 560 AASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQE 619 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 VS + R DT++ L G +VL GLL+D Q + +P LS IP LG Sbjct: 620 VSTVDTRASVDAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSDIPGLG 679 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ALFRN + + +T + + P++++ Sbjct: 680 ALFRNEKRSVNKTNLMVFLRPYIIRDSGAG 709 >gi|239907473|ref|YP_002954214.1| general secretion pathway protein D precursor [Desulfovibrio magneticus RS-1] gi|239797339|dbj|BAH76328.1| general secretion pathway protein D precursor [Desulfovibrio magneticus RS-1] Length = 685 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 97/272 (35%), Gaps = 33/272 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +V+ L+ A QV ++ I EV D G ++ SG + Sbjct: 372 DQVVKKLD-APRKQVYVEALIMEVSTDKSVSFGVNLNVANKQSGLGDGKYGGLLFASSNP 430 Query: 242 GGDFSVKGVLDRF-----------------------SFETVLHALERATAIRTLAEPTLT 278 G S+ F + + +++A + + +A P L Sbjct: 431 AGYESLYNSSGAFVPPAGGSLGGLAFPVKIGEVIYSNLQAMINASKSDNSFNIIATPQLM 490 Query: 279 AISGQSASFTSGGQHLYKTVSSST------GATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + A+ T Y T D G L TP + I L++ Sbjct: 491 TLDNEEATITVAENRPYLTSQDVGQSTTDRPYQRFDYKDVGTTLKVTPQINEGDSIKLKV 550 Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + E S V P+ R R +TT+ +G TIVL+GL+ + +P L Sbjct: 551 KQETSRIDETVTKETGALQPTTRKRVTETTIMCRNGETIVLSGLIGKSRAEGNSKVPGLG 610 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P++G LF+N E T +++ TP + P Sbjct: 611 DVPVVGWLFKNKSVADERTNLYVFITPRITAP 642 >gi|86147852|ref|ZP_01066158.1| MSHA biogenesis protein MshL [Vibrio sp. MED222] gi|85834379|gb|EAQ52531.1| MSHA biogenesis protein MshL [Vibrio sp. MED222] Length = 562 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 64/320 (20%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 ++E ++ G +++ + +A + + + + S+K + Q Sbjct: 227 QLEAAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIREVREFLGISQKRLQR-------Q 279 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVS 240 V L+ I EV Q G + SS+G + + G + Sbjct: 280 VILEAKIMEVTLSDGYQQGINWTKMFSSNGTNYTLGMGSIVKNAAGTIIPGKLPGMDPIG 339 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V+ SFE VL ++ + L+ P +TA + Q A G + T S Sbjct: 340 TALGGQSNLVVSGGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGIDKYFVTNLS 399 Query: 301 ST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVI 341 S+ +T G+ L TP + G + L + V Sbjct: 400 SSVGSGDNANVAPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGS 459 Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +P +R++D+ + G +V+ GL+K + + +P L IP LG LFR Sbjct: 460 TTGVVTLPLAKSSIRESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFR 519 Query: 400 NSRFNREETEIFIAATPFLV 419 N+ ++TE+ I P +V Sbjct: 520 NTSQLTQKTELVILLKPTVV 539 >gi|319761377|ref|YP_004125314.1| general secretion pathway protein d [Alicycliphilus denitrificans BC] gi|317115938|gb|ADU98426.1| general secretion pathway protein D [Alicycliphilus denitrificans BC] Length = 767 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 78/329 (23%), Positives = 126/329 (38%), Gaps = 25/329 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L G VR + D +R L ++ R + A K QV ++ +I EV Sbjct: 449 LEGNVRVVADDKRNALLIRAPRAEYRRIEQALRELDK--------APTQVLIEASIVEVS 500 Query: 207 RDILKQIGFQHSITGSSSGPSKS---FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + G + I S SG + G + FS + + L+AL Sbjct: 501 LTGNLKYGVEWFIQNSLSGDRTGQALLNMNNSGSIGPQQPGFSYTILNKAGAVRATLNAL 560 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----THDYGVVLHFT 319 + +R L+ P++ + SA+ G Q K ++ T VT D GV+L T Sbjct: 561 AANSQLRVLSNPSVLVLDNHSATILVGKQQPIKQSTTVTTGNLVTESIVYKDTGVMLSVT 620 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P+V + G + L I +V++ A S+ R+ + V + SG IVL G++ ++ Sbjct: 621 PSVNAGGLVTLDINQQVTDVGDVDAATGQRSFLTRQIQSRVAVRSGDPIVLGGVMSENQS 680 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 G+P L +P+LGALF TE+ + TP + DD Sbjct: 681 TGNSGVPGLRDVPVLGALFSTDTTTSARTELLVVLTPR----------ALEDDDALRAAS 730 Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 A+ R + G + GA Sbjct: 731 AEMRDRMRTMSLQGLLVPASAAKPPEGGA 759 >gi|114778365|ref|ZP_01453212.1| probable pilQ; fimbrial type-4 assembly signal peptide protein [Mariprofundus ferrooxydans PV-1] gi|114551328|gb|EAU53885.1| probable pilQ; fimbrial type-4 assembly signal peptide protein [Mariprofundus ferrooxydans PV-1] Length = 793 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 91/241 (37%), Gaps = 17/241 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------- 245 QV ++ I E + +G + T +S+G + D Sbjct: 548 QQVMVEARIVEATDTFSRDLGVKWGGTLNSNGGGYTHTVTGAASAPQNVVDLGAAVKAGA 607 Query: 246 ------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 ++ + + + L A E I+ ++ P + + Q A Q ++ + Sbjct: 608 GGAIGYTLGTLNNALNLNLELSAAEAEGQIKVVSSPRVFTSNLQEALIEQDQQIPFQVTT 667 Query: 300 SSTGAT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 +ST S + L TP + + RI +++ V++ N P+ ++ T Sbjct: 668 ASTPPVVSYQLKSAKLTLKVTPQITADKRIIMQLV--VNKDTPVANTVGPPTIDKKQIMT 725 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + +G T+VL G+ G+P L IP +G F+ + R E+ I TP + Sbjct: 726 KLLVKNGETMVLGGIYTQTTSDQVNGVPGLQNIPFIGNFFKRKQKVRNRNELLIFITPTI 785 Query: 419 V 419 + Sbjct: 786 I 786 >gi|152986624|ref|YP_001348780.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] gi|150961782|gb|ABR83807.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] Length = 758 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 90/457 (19%), Positives = 166/457 (36%), Gaps = 47/457 (10%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++T + + P+ L + ANA +++ I + + I L++ + Sbjct: 136 RQTSVVELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIESIVRSLDQAGEHDYSI 195 Query: 65 -DVQDVLVSD-PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 D++ V++ D V GKN V+ + +L + Sbjct: 196 YDLRHAWVAEIAEVLDQSVTPAA-----GKNAATVQVLADSRSNRLVLLGPPQARARLLR 250 Query: 123 LEMTL---RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR--------------AVELSE 165 L +L A+S + D + + I +S R A+ ++ Sbjct: 251 LAQSLDVPSSRSANSRVIRLRHGDAKTIASTLGEIGESLREGGDQGQRRSGKRGALVRAD 310 Query: 166 TFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 L+ ++++ L++ Q+ ++ I E+ ++ + +G Q ++ G Sbjct: 311 ESLNALVILADPQEVGLFEEIVRQLDVP-RAQLLVEAAIVELTGELNEALGVQWAMRGGH 369 Query: 224 SGPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLA 273 + SFA G L F ++ AL R + L+ Sbjct: 370 AVGGTSFAGSGLSIGTLLGALQSGKPPAELPDGAIVGLGSRDFGALITALTRNSNSNLLS 429 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPG 326 P+L + Q A G ++T S SS T+V D GV L TP + Sbjct: 430 TPSLLTLDNQKAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVTLKVTPHIGDDR 489 Query: 327 RIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + L I+ E+S R +TV G IVL GL++DD+ + Sbjct: 490 MLRLEIEQEISSIAPAATLAAKTVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDVVRSDS 549 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +PLL IP +G LFR++R R + + + P +V+ Sbjct: 550 RVPLLGDIPGVGRLFRSTRDTRVKRNLMVFLRPSIVR 586 >gi|293604906|ref|ZP_06687303.1| general secretion pathway protein D [Achromobacter piechaudii ATCC 43553] gi|292816734|gb|EFF75818.1| general secretion pathway protein D [Achromobacter piechaudii ATCC 43553] Length = 791 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 103/273 (37%), Gaps = 30/273 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---AADFGGKFV 239 +V++ L+ QV ++ I EV + G Q + + + + GG + Sbjct: 415 EVIDQLDQR-RAQVLVESLIVEVSEQAAAEFGIQWMTGAGNINSNGTSFIGGTNLGGSGI 473 Query: 240 SEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISG 282 + G S+ + + + A++ L+ P L + Sbjct: 474 TGNGPTSIDALGSGLSLGVVKGTVDVLGNQVINLGVLARAMQNTGEANILSTPNLLTLDN 533 Query: 283 QSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 QSAS G + T SS ++ D G+ L+ P + G + L I Sbjct: 534 QSASILVGKTVPFVTGQYVTSGSNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQ 593 Query: 335 EVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 EVS + R DT+V + G IVL GLL+D++ +P L +P+ Sbjct: 594 EVSSIDESRSTPTTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLTSNSVPGLGSLPV 653 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +G+LFR R +T + + P++V+ Sbjct: 654 IGSLFRYDTRKRTKTNLMVFLRPYVVRDANRSA 686 >gi|71908829|ref|YP_286416.1| type II and III secretion system secretin [Dechloromonas aromatica RCB] gi|71848450|gb|AAZ47946.1| type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal [Dechloromonas aromatica RCB] Length = 667 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 75/438 (17%), Positives = 160/438 (36%), Gaps = 59/438 (13%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV-------DVQDVL--VS 72 + P E A + + + ++ +K I + V ++D+L + Sbjct: 180 AALAKPVTLEFRDASLKSVFEVLSRASGLNFVFDKDIKGDIKVTLFVRNSPLEDILRLIL 239 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 + D + + ++ ++ + ++ L D+ + ++ Sbjct: 240 TTNQLDKRQLNDNSFLIYPNTPAKSK-----EYQELVVRNFYLANTDVKQAQNLVKTVAK 294 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 ++ + + +++ A+ L +++++ L++A Sbjct: 295 SKDVFADEKLNLLIVKDTP-------DAMRLV-----------------ERLIDSLDLAE 330 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVS 240 + V L+V + EV R L Q G T +++ + GG + Sbjct: 331 PE-VMLEVEVLEVTRSRLNQFGVDWPDSVGYGLLQDTLSTTTATAAGYTTTVTPGGTLAN 389 Query: 241 EGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + +G L F + L+ + LA P + + + A G + T Sbjct: 390 GYINLRNRGGLTSFVANPGLTLNLKGQNADTNVLANPRIRVKNREKAKVHIGDKLPVFTT 449 Query: 299 SSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYR 352 +++ + SV D G+ L P V + +++ EVS V + Sbjct: 450 TATANVGVSASVNYLDVGLKLDVEPNVTLDDEVSIKVGLEVSSIVKEITGPSNSLAYQIG 509 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A TT+ L G T VLAGL+ D+ ++ IP L +IP++G F + + +TEI + Sbjct: 510 TRSASTTLRLKDGETQVLAGLISDEERKTTSHIPGLGEIPVVGRAFGSHKDTSTKTEIIL 569 Query: 413 AATPFLVKPVAMRDLSRP 430 TP +V+ + + +P Sbjct: 570 LITPRIVRNIHRPEYVQP 587 >gi|152985006|ref|YP_001347404.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] gi|150960164|gb|ABR82189.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] Length = 658 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 86/448 (19%), Positives = 155/448 (34%), Gaps = 54/448 (12%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT-- 75 P L + ANA +I+ I + + + L++ D V + Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQ-------KGSHDYSVINLRHG 217 Query: 76 -KADV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RF 130 D V + K A VI + ++ + L +L Sbjct: 218 WVMDAAEVLNSAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTAR 277 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------------------ 172 A++ + +D L + I + + S G Sbjct: 278 SANTRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQSGGGRPSNILIRADESTNALVL 337 Query: 173 -RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + ++ + ++ L++ QV ++ I E+ DI +G Q +I G +++ Sbjct: 338 LADPDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTRTSF 396 Query: 232 ADFGGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + G + + SF ++ AL + L+ P+L + Sbjct: 397 GNTGLSIGTLLQALKDDKIPNPLPDGAVVGIGSSSFGALVTALSANSKSNLLSTPSLLTL 456 Query: 281 SGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 Q A G + T S SS T+V D GV L TP + + L I+ Sbjct: 457 DNQKAEILVGQNVPFNTGSYTTNSEGSSNPFTTVERKDIGVNLKVTPHINDGAALRLEIE 516 Query: 334 TEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 E+S V + R +T+ +G IVL GL++DD+ Q + +PLL I Sbjct: 517 QEISSIAPNVQQVSDTDIITNKRSIKSTILAENGQVIVLGGLIQDDVVQAESKVPLLGDI 576 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P LG LFR+++ + + + P +V Sbjct: 577 PWLGRLFRSTKDTHTKRNLMVFLRPTVV 604 >gi|320155211|ref|YP_004187590.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O] gi|319930523|gb|ADV85387.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O] Length = 531 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 65/304 (21%), Positives = 112/304 (36%), Gaps = 34/304 (11%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 ++ G +++ + +A ++ R ++ + + + QV L+ I Sbjct: 210 GLIGSGKGQSVVVTPQAGVITVRAFPDEIREV------RQFLGISQERMQRQVILEAKIL 263 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-------DFSVKGVLDRFSF 256 EV Q G S +S G S S + G V G + SF Sbjct: 264 EVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLPGLDAIGSLLGGQTNVTISDGSF 323 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306 E VL + + L+ P +TA + Q A G Y T SS + Sbjct: 324 EAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQYYVTALSSNVGNDDKSKAVPEVT 383 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355 +T G+ L TP + G + L + V E ++ +R+ Sbjct: 384 LTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETKQLNLGGDFQNVTLPLAKSSIRE 443 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +D+ + G +V+ GL+K + + +P IP LG LFRN+ ++TE+ I Sbjct: 444 SDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGDIPALGHLFRNTSNLTQKTELVILLK 503 Query: 416 PFLV 419 P +V Sbjct: 504 PTVV 507 >gi|37524117|ref|NP_927461.1| hypothetical protein plu0091 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783540|emb|CAE12386.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 344 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 7/232 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252 QV + I R+ L ++G + + + + + Sbjct: 114 QQVQITAHIVTSSREALHELGIYWGMPIGEQINTSTGINRLNINQAANDNMHRFAFNIAR 173 Query: 253 --RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 E L ALE+ + +A P LTA Q AS G VS ++V Sbjct: 174 IHTSLLEMELSALEQENQLDIIASPRLTASHQQLASIKQGSDIP--YVSQEKEKSTVQFK 231 Query: 311 DYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP +L +I L+I + I G+ + ++ T V + +G T+ Sbjct: 232 EAVLGMEVTPHILRKNKIRLSLKISQNMPGISISQGGGENLTIDKQEIITQVTVKNGETL 291 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +L G+ + + + +P LS IP+LG+LF E+ I TP L+ Sbjct: 292 ILGGIFQQKKGEQTQKVPYLSDIPLLGSLFNQKAHKHSRRELVIFITPQLMD 343 >gi|323491669|ref|ZP_08096847.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546] gi|323314031|gb|EGA67117.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546] Length = 551 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 124/320 (38%), Gaps = 46/320 (14%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGE 193 ++E ++ G +++ S +A ++ R ++ N L + Sbjct: 216 QLESAVSQLIGSGSGQSVVVSPQASVITVRAFPDEIR---------EIRNFLMVSQQRMH 266 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250 QV L+ I EV Q G S +S+G + + K + G ++ G+ Sbjct: 267 RQVILEAKILEVTLSDGYQQGINWSKAFTSNGTNYTLGQGSTIKDSTTGLPVTLPGLDAI 326 Query: 251 -----------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + SFE VL + + L+ P +TA + Q A G + T Sbjct: 327 GTLLGGQSNLVISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDF 386 Query: 300 SSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------- 341 S+ + +T G+ L TP + G + L + V + Sbjct: 387 SANTDSSSSTTNTTTDIELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVTQEQKEINY 446 Query: 342 GVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 G N+ +P + +R++D+ + G +V+ GL+K + + +P L +P LG LFR Sbjct: 447 GSNSLTLPLATSSIRESDSVIRAQDGDVVVIGGLMKSNTVEQVSKVPFLGDVPALGHLFR 506 Query: 400 NSRFNREETEIFIAATPFLV 419 N+ ++TE+ I P +V Sbjct: 507 NTSQLTQKTELVILLKPSVV 526 >gi|117619719|ref|YP_857681.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561126|gb|ABK38074.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 733 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 113/311 (36%), Gaps = 30/311 (9%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 + +L + S+ AV + E ++ S+ K M + QV Sbjct: 420 AKASEVAALLSSESTKLLSSKGAVSVDERTNVLVVKDTADVISNIKRMLDILDIPVKQVV 479 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS----------- 246 ++ + + + +G + +T + + + G S Sbjct: 480 IEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGTIEGNDSSGNNNGGSTITRPGVDDRL 539 Query: 247 ----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 V + D + L ALE+ + +A P +T + + A G Sbjct: 540 NVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEIIASPRVTTANQKPALIEQG 599 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM 348 + Y SS+GATSVT + L TP + R+ L + + GD Sbjct: 600 TEIPYVES-SSSGATSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDA 658 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 S + T V + +G T+VL G+ + I+ +PLL IP LG LFR + ++ Sbjct: 659 VSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSENKKR 718 Query: 409 EIFIAATPFLV 419 E+ I TP +V Sbjct: 719 ELLIFVTPKIV 729 >gi|227824391|ref|ZP_03989223.1| type II and III secretion system protein [Acidaminococcus sp. D21] gi|226904890|gb|EEH90808.1| type II and III secretion system protein [Acidaminococcus sp. D21] Length = 424 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 72/256 (28%), Positives = 114/256 (44%), Gaps = 15/256 (5%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + ++KV+ ++ + QVTL+ I ++ D +++G Q +G S+ Sbjct: 141 GSPGDQARAQKVLARMD-RLQKQVTLEARILSLQEDASRELGLQWKWSGLPQQNSEETD- 198 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G G SF+ +L AL + + LA P + + G+ G Sbjct: 199 ----------GGTFHLGHGYTGSFQGILSALCQKGKAKVLATPRIVTVPGKEGKIFIGDH 248 Query: 293 HLYKTVSSSTGATSV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 T S G T+ D G+ L +TP V G I + TEVS P + ++ Sbjct: 249 IPVVTEKVSNGTTTTSTEYVDAGIRLSYTPIVGPDGVITASVHTEVSTPTL-ISELHNYR 307 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R ADT V L G T+V+ GL+ D+ Q+ E IPLLSK+P+LG LF + TE+ Sbjct: 308 ITSRTADTNVRLLEGETLVIGGLISDEEQKRLETIPLLSKLPLLGNLFTFRSRKKTRTEV 367 Query: 411 FIAATPFLVKPVAMRD 426 + TP+L +P Sbjct: 368 VMLLTPYLTEPGRSPA 383 >gi|238758713|ref|ZP_04619887.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236] gi|238703010|gb|EEP95553.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236] Length = 437 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 98/231 (42%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L ++G + + ++ + +F + + F+V + Sbjct: 206 QQVQLAAHIVTMSRENLHELGVRWGMDEATQPRALRVNNFNVNLPLPNSALSAGFNVARI 265 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + ALE+ + +A P L Q+AS G Y G ++ Sbjct: 266 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGVPTIEFK 324 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + + ++ T + + G TI Sbjct: 325 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAIKRGDSEALLIDKQEIKTQITVNDGETI 384 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + Q +P+L+ IP+LGALF+ + E+ I TP L+ Sbjct: 385 VLGGIFQQKNNQGINKVPILADIPLLGALFKQDVRAQTRRELVIFITPRLI 435 >gi|122091112|emb|CAL13995.1| putative membrane transport protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 371 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 6/233 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L+++G + + + S F + + F+V + Sbjct: 140 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTASLRMSDFNVNLPLPNSAVSAGFNVARI 199 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + ALE+ + +A P L Q+AS G Y GAT++ Sbjct: 200 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 258 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + + ++ T + + G TI Sbjct: 259 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 318 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 VL G+ + Q +PLL+ IP LG LF+ + E+ I TP L+ Sbjct: 319 VLGGIFQQKSSQGVNKVPLLADIPWLGGLFKQDTQQQSRRELVIFITPKLISA 371 >gi|171318673|ref|ZP_02907818.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5] gi|171096140|gb|EDT41064.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5] Length = 553 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 108/295 (36%), Gaps = 34/295 (11%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197 + L Q ++ +++ NLL + QV Sbjct: 229 RALDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRIAQIAGLIDAIDRPSRQVR 288 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGGD 244 ++ I E + + +G + ++ + AA G F + Sbjct: 289 IEARIVEGEQGFSRNLGARVALRAQGRAPAADGAASASDTRNALDLAARPLGGFEAATAG 348 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F++ + L ALE + ++ P + A G + Y+ G Sbjct: 349 FTLFAAPLSRVLDVELSALEAQGRGQIISSPRVVTADRVKAIVEQGSELPYQ-AKVGNGV 407 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P + GR+ L + +V++ IG P+ + T VE+ + Sbjct: 408 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEN 465 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 466 GGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSELVVFITPTVV 520 >gi|229590685|ref|YP_002872804.1| general secretion pathway protein D/Q [Pseudomonas fluorescens SBW25] gi|229362551|emb|CAY49458.1| general secretion pathway protein D/Q [Pseudomonas fluorescens SBW25] Length = 788 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 120/320 (37%), Gaps = 43/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--------------KKVMNLLNIAGE 193 G + Q +A + S F + Q +++ ++V+++L+ Sbjct: 410 SGGNSSSQAGAQATDQSVAFSAGGVTIQADATTNTLLISAPEPLYRNLREVIDMLDQR-R 468 Query: 194 DQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDF 245 QV ++ I EV D + G Q + G ++ + G Sbjct: 469 AQVVIESLIVEVGEDDANEFGVQWQSGDLAGKGVIGGTNLGGSGLQTGGLTSIDALPGGL 528 Query: 246 SVKGVLDRFS---------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 SV + + + + AL+ L+ P L + ++AS G + Sbjct: 529 SVGYLSGTVNIPGVGNVMDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 588 Query: 297 TV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNA 345 + +S+ +VT + G+ L+ P + G + L I EVS Sbjct: 589 SGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQEVSSIDERASSSAT 648 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 R DT++ L G +VL GLL+D Q E +P LS IP LGALFRN R Sbjct: 649 SAGVVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNEAVPWLSSIPGLGALFRNERRAT 708 Query: 406 EETEIFIAATPFLVKPVAMR 425 +T + + P++++ A Sbjct: 709 TKTNLMVFLRPYIIRDSAGG 728 >gi|86157073|ref|YP_463858.1| type II and III secretion system protein, secretin [Anaeromyxobacter dehalogenans 2CP-C] gi|85773584|gb|ABC80421.1| type II and III secretion system protein, secretin [Anaeromyxobacter dehalogenans 2CP-C] Length = 882 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 64/310 (20%), Positives = 110/310 (35%), Gaps = 45/310 (14%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 D + G V T + T + A ++ ++ L+ QV ++ I Sbjct: 572 DVLSERGSVSTDE---------RTNVLIVKDIPEALVRAEGLVRNLDTEIP-QVLIESRI 621 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------- 246 E + +Q+G Q S + + + VS G Sbjct: 622 VEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQAPNQGTSATPNYAVN 681 Query: 247 ----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + F+ L ALE ++T++ P + I + A+ G Sbjct: 682 LPAAIGQGAGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATIDNKEATI--G 739 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMP 349 +S + T + + L TP V + G I L+I+ + P + P Sbjct: 740 QGISIPFSQTSASGVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNSSLTGSNGQP 799 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 S R+A+T V + G T V+ G+ +P LSKIP+LG FR+ + TE Sbjct: 800 SISKREAETEVLVKDGETTVIGGIYTRSTASKTAAVPFLSKIPLLGFFFRSDTNTDDHTE 859 Query: 410 IFIAATPFLV 419 + I TP ++ Sbjct: 860 LLIFITPRIL 869 >gi|220915798|ref|YP_002491102.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1] gi|219953652|gb|ACL64036.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1] Length = 887 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 64/310 (20%), Positives = 110/310 (35%), Gaps = 45/310 (14%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 D + G V T + T + A ++ ++ L+ QV ++ I Sbjct: 577 DVLSERGSVSTDE---------RTNVLIVKDIPEALVRAEGLVRNLDTEIP-QVLIESRI 626 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------- 246 E + +Q+G Q S + + + VS G Sbjct: 627 VEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQAPNQGTSSTPNYAVN 686 Query: 247 ----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + F+ L ALE ++T++ P + I + A+ G Sbjct: 687 LPAAIGQGSGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATIDNKEATI--G 744 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMP 349 +S + T + + L TP V + G I L+I+ + P + P Sbjct: 745 QGISIPFSQTSASGVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNSSLTGSNGQP 804 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 S R+A+T V + G T V+ G+ +P LSKIP+LG FR+ + TE Sbjct: 805 SISKREAETEVLVKDGETTVIGGIYTRSTASKTASVPFLSKIPLLGFFFRSDTNTDDHTE 864 Query: 410 IFIAATPFLV 419 + I TP ++ Sbjct: 865 LLIFITPRIL 874 >gi|152989153|ref|YP_001346800.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] gi|150964311|gb|ABR86336.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] Length = 634 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 18/262 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 V+ L+ QV ++ I EV DI + +G Q + SF Sbjct: 325 DNVIAQLD-RPRAQVLVEAAIVEVSGDINEALGVQWAARAGDVAGGTSFGNGGLTIGSLL 383 Query: 241 -------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + +F ++ AL + L+ P+L + ++A G Sbjct: 384 NQEAGKRPNLPDGAIIGIGSRNFGALVTALSSDSNNNLLSTPSLLTLDNEAAEILVGQNV 443 Query: 294 LYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++T S + T+V D G+ L TP + + L+++ E SE Sbjct: 444 PFQTGSYTTDSAGASNPFTTVERKDVGITLKVTPHINEGDTLRLKVEQESSELASAPAGI 503 Query: 347 DMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 R +T+ G IV+ GL+KD+++ +PLL IP+LG LFR+++ Sbjct: 504 STSDVITNKRSVKSTILADDGQIIVIGGLIKDNVKTQVSKVPLLGSIPLLGRLFRSTKDV 563 Query: 405 REETEIFIAATPFLVKPVAMRD 426 E+T + + P L++ A D Sbjct: 564 NEKTNLMVFLRPTLLRNTANAD 585 >gi|157373684|ref|YP_001472284.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis HAW-EB3] gi|157316058|gb|ABV35156.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis HAW-EB3] Length = 567 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 63/334 (18%), Positives = 115/334 (34%), Gaps = 48/334 (14%) Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 L + + V + V + G ++ + ++ +ET L Sbjct: 228 TTKTDFWGELEKTLVSIVGSTGGGRQVVVTPQAGLVTVRGYPNELRQVRTFLQTAETHLQ 287 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 QV L+ I EV Q G Q G + Sbjct: 288 ------------------------RQVILEAKILEVTLSDGYQQGIQWDNVLGHVGSTDI 323 Query: 230 FAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G ++ + +F T+++ L+ + L+ P +TA + Q Sbjct: 324 TFGTSENTEGLGDLITNAIGGVTSLSVKGSNFNTMINLLDTQGDVDVLSSPRVTASNNQK 383 Query: 285 ASFTSGGQHLYKTVSS----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 A G + T S +T +T G+ L TP + G I L I Sbjct: 384 AVIKVGTDEYFVTDVSSTTVAGTTPVTTPEVELTPFFSGIALDVTPQIDGEGNILLHIHP 443 Query: 335 EVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 V + + +R++DT ++ +G +V+ GL+K + +++ + Sbjct: 444 SVIDIKEQTKVIKISGSSLELPLAQSDIRESDTVIKAKTGDVVVIGGLMKSENIEVESKV 503 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 PLL IP++G LF N + ++TE+ I P +V Sbjct: 504 PLLGDIPLVGELFTNRSKSLKKTELVILLKPTVV 537 >gi|28899478|ref|NP_799083.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633] gi|153839930|ref|ZP_01992597.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810] gi|28807714|dbj|BAC60967.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633] gi|149746550|gb|EDM57538.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810] gi|328471385|gb|EGF42280.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus 10329] Length = 547 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 111/304 (36%), Gaps = 30/304 (9%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202 +L V + S + + T + + ++V L + + QV L+ I Sbjct: 220 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 279 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256 EV Q G S +S G S S + + + +F Sbjct: 280 LEVTLSDGYQQGINWSNLSASIGNSGSIIVNRPASALPPLDAIGTLLGGQTNVTISDGNF 339 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306 E VL+ + + L+ P +TA + Q + G + T SS Sbjct: 340 EAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQYFVTELSSNAGNGENSNAVPEVE 399 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355 +T G+ L TP + + G + L + V E V ++ +R+ Sbjct: 400 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSIRE 459 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +D+ + G +V+ GL+K + +P L +P LG LFRN+ ++TE+ I Sbjct: 460 SDSVIRAKDGDVVVIGGLMKQQNVEQVSKVPFLGDVPALGHLFRNTSNVTQKTELVILLK 519 Query: 416 PFLV 419 P +V Sbjct: 520 PTVV 523 >gi|291086346|ref|ZP_06355526.2| hypothetical protein CIT292_10180 [Citrobacter youngae ATCC 29220] gi|291067951|gb|EFE06060.1| protein transport protein HofQ [Citrobacter youngae ATCC 29220] Length = 386 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 12/331 (3%) Query: 100 ILIGHDGKQMLNLDILIERDIAH----LEMTLRRFIADSN--IRVEMVSDTVVLHGMVRT 153 +++ +G + + + + A + ++ + N I ++ + + Sbjct: 54 LVLRQEGNILHVHSVQWQSENASRQENEQARMQASLPLENRSIVLQYADAAELAKAGEKL 113 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + T N ++ +K + +++ +QV L I + L+++ Sbjct: 114 LSAKGSMTVDKRTNRILLRDNSVVLNALEKWVAQMDLP-VEQVELAAHIVTINEKSLREL 172 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIR 270 G + S+ + + V + R + E L ALE+ + Sbjct: 173 GVKWSLADAQQPGAVGNVTTLASDLSVSAATSRVGFNIGRINARLLELELSALEQKQQLD 232 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 +A P L A Q AS G + Y+ S +GATSV + + + TPTVL GRI L Sbjct: 233 IIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRL 292 Query: 331 R--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + I V V+ G++ + ++ +T VE+ SG TI L G+ + + +PLL Sbjct: 293 KLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETIALGGIFSHKNKAAADSVPLL 352 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG+LFR+ E E+ + TP LV Sbjct: 353 GDIPWLGSLFRHDGKEDERRELVVFITPRLV 383 >gi|283956850|ref|ZP_06374323.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni 1336] gi|283791576|gb|EFC30372.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni 1336] Length = 470 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S K + L + QV + V+I V + G + Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIGLNSQVNNE 250 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F +F + G G+ +F+++++ L + L+ P L A++ Q A + G Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309 Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Y+ SS G + TT G++L+ P + G+I LRI +S+ Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369 Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + P +K + V++ + T++L GL+ D K I LSKIPILG Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +LF+ N + TEI TP +V V L Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461 >gi|95929094|ref|ZP_01311839.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] gi|95134995|gb|EAT16649.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] Length = 553 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 72/346 (20%), Positives = 127/346 (36%), Gaps = 64/346 (18%) Query: 114 ILIERDIAHLEMTLRRFIADSN---IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + L+ L+ + N + V+ + VV+ + +++ +L Sbjct: 211 VSESDFWTGLQQALQSLVGRENGRAVIVQPQAGLVVVR-------ALPQELQIVTDYL-- 261 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 N + + QV L+ I EV + Q G + + + + Sbjct: 262 ---------------NKTQVTLQRQVILEAKIIEVELNDGYQTGINWAGLIHNGNNTATI 306 Query: 231 AADFGGKFVSEGG------------------DFSVKGVLDRFSFETVLHALERATAIRTL 272 GG ++S+G L FE + A++ ++ L Sbjct: 307 GQVGGGTYLSDGVSEIAGTNPLVNGLVTSAFGGVFSTTLQFDDFEAFIEAVKSQGDVQVL 366 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----------THDYGVVLHFTPTV 322 + P ++ ++ Q A G + T SS T T G+ L TP + Sbjct: 367 SSPRISTLNNQKAVIKVGTDEFFVTDISSDTVTGTTTTTTPDITLTPFFSGIALDVTPQI 426 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSY---------RVRKADTTVELPSGGTIVLAGL 373 GR+ L + VSE V + VR++DT VE SG +V+ GL Sbjct: 427 SGQGRVTLHVHPTVSEVVDQTKVITVAGQAQSLPLAFSSVRESDTIVEARSGQVVVIGGL 486 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +K+ + G+PLL IP LG LFR+ + + ++E+ I P +V Sbjct: 487 MKNSDTREGAGVPLLGDIPGLGHLFRHQKNSTSKSELIILLKPLVV 532 >gi|290512027|ref|ZP_06551395.1| protein transporter HofQ [Klebsiella sp. 1_1_55] gi|289775817|gb|EFD83817.1| protein transporter HofQ [Klebsiella sp. 1_1_55] Length = 413 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 5/230 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---FVSEGGDFSVKGVL 251 QV L I + L+++G + + + P + G + Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNIGKI 240 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + E L ALER + +A P L A Q AS G + Y+ S +GATSV + Sbjct: 241 NGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 300 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + TPTVL GR+ L+++ + P V+ + G+ + ++ +T VE+ SG T+ Sbjct: 301 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETLA 360 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 361 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410 >gi|149926612|ref|ZP_01914872.1| pili assembly protein PilQ [Limnobacter sp. MED105] gi|149824541|gb|EDM83757.1| pili assembly protein PilQ [Limnobacter sp. MED105] Length = 681 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 104/244 (42%), Gaps = 12/244 (4%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------KSFAADFG 235 ++N L+ QV ++ + + + +G + + + P S Sbjct: 439 IVNGLD-KPVKQVMIEARVVLADTSVSRDLGIRLRALSARADPGFDEVGDQFGSGNFVNT 497 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G + +++ L ALE +RT++ P + + + A G + Y Sbjct: 498 GVENATNLGYTLFNANSTRLINLQLRALELENKVRTVSNPRVITSNKEPALIEQGTEIPY 557 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + +SS GAT+ + + L TP + G + L +V++ IG+ + P+ R+ Sbjct: 558 QIATSS-GATATEFKEANLKLAVTPQIAPDGTVLLD--VDVAKDSIGIETSNGPAIDTRR 614 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V + GGT+VL G+ ++D L + P L IP LG LFR +R E+ I T Sbjct: 615 VKTKVLVSDGGTVVLGGIFEEDDNVLNDKTPFLGDIPGLGVLFRGKNESRRRAELLIFLT 674 Query: 416 PFLV 419 P ++ Sbjct: 675 PVVL 678 >gi|299768549|ref|YP_003730575.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1] gi|298698637|gb|ADI89202.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1] Length = 721 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 K+++LL++ + QV ++ I K++G + I + + Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502 Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 G G + F + L AL+ Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYG 562 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P + Q A +G Q Y++ ++S + + D + L+ TP++ G+ Sbjct: 563 EVISTPKVMTADKQPAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I +++ G + +T V + +G T++L G+ + + +P Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNQINTNVLVNNGETVILGGVFEQTTTNSQTKVPF 681 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LG LFR + ++ E+ I TP +V Sbjct: 682 FGDIPVLGHLFRKDVKSDDKQELLIFVTPRIV 713 >gi|229576793|ref|YP_001008121.2| putative outer membrane porin HofQ [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 376 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 6/233 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L+++G + + + S F + + F+V + Sbjct: 145 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTASLRMSDFNVNLPLPNSAVSAGFNVARI 204 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + ALE+ + +A P L Q+AS G Y GAT++ Sbjct: 205 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 263 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + + ++ T + + G TI Sbjct: 264 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 323 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 VL G+ + Q +PLL+ IP LG LF+ + E+ I TP L+ Sbjct: 324 VLGGIFQQKSSQGVNKVPLLADIPWLGGLFKQDTQQQSRRELVIFITPKLISA 376 >gi|325927911|ref|ZP_08189135.1| type IV pilus secretin PilQ/competence protein [Xanthomonas perforans 91-118] gi|325541751|gb|EGD13269.1| type IV pilus secretin PilQ/competence protein [Xanthomonas perforans 91-118] Length = 624 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 98/261 (37%), Gaps = 27/261 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231 DQV ++ I + +G + + G+ + Sbjct: 362 RPVDQVLIEGRIVIATDTFARDLGAKFGLGGTHTYGDNVATIGSGATGGGVAAGRGLNVN 421 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + + + F+ + L AL++ ++ P + + + G Sbjct: 422 LPTGAFTSGATAPSLAYTLLGSNFNLDLELSALQQEGRGEVISNPRIVTSNQREGVIKQG 481 Query: 291 GQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGV 343 + Y TV+ TG +V + + L TPT+ + R+ L + EV + + Sbjct: 482 REIGYVTVTGGTGGQAATPNVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVDQLIELP 541 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 G +PS R+ +T V + G T+V+ G+ + + +P L +P LG LF++ Sbjct: 542 LYGTVPSINRREINTAVLVDDGQTVVIGGVYEFTDRASVNKVPFLGDVPFLGNLFKSRGR 601 Query: 404 NREETEIFIAATPFLVKPVAM 424 + + E+ + TP +++ + Sbjct: 602 QKSKAELLVFITPKVLRVASA 622 >gi|206602610|gb|EDZ39091.1| Putative type II secretion system protein D [Leptospirillum sp. Group II '5-way CG'] Length = 615 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 64/365 (17%), Positives = 118/365 (32%), Gaps = 47/365 (12%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 +E TLR+ I + + + + TV + G V+ + +QR +++ L Sbjct: 276 DKMEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIVRDQL------------ 323 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAADFGGKFV 239 +V ++ IAE+ G + + + G Sbjct: 324 ------------RREVFFRIDIAEIDLTDKDAYGINWNALAHGVFNSTLALTGAGAGNAG 371 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 F V+ ALE + + +P + +SGQ S + Y Sbjct: 372 LASTGGVTTPYGASFGSAAVIQALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQGE 431 Query: 300 S----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------G 342 + + G+ L TPT L +I + V+ G Sbjct: 432 YPFFAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQIHMHGTVVVNSLQQFVTIDIKG 490 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + P R T + G T+V+ GL+ + + +P L +IP+L LF Sbjct: 491 IGTFQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWTVPFLGQIPVLKWLFSGYS 550 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP-DDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + ++ TE+ + TP + + LS P D + D ++ + V Sbjct: 551 YKKQVTELVVIITPEIRR---TPRLSSPRTDDFLNPDSPVYRKALPGSRPFSVPRLPHVP 607 Query: 462 GQNYK 466 G Sbjct: 608 GYGSN 612 >gi|172059128|ref|YP_001806780.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6] gi|171991645|gb|ACB62564.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6] Length = 771 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 102/294 (34%), Gaps = 35/294 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ I E+ +G Q + Sbjct: 370 IQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQV 428 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER-------------- 265 + A G + + + G L L + Sbjct: 429 ASGQFLGGTNLAPTAGTGLGNSIVNLTSGGTAATTGLAANLAGLSQGLNIGWLHNMFGVQ 488 Query: 266 -----------ATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATS 306 + L+ P L + + A G + ++S + Sbjct: 489 GLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNT 548 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365 D G+ LH P + G + L++ TE S NA P++ R +T+ +G Sbjct: 549 YDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNG 608 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 609 EIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 662 >gi|94500433|ref|ZP_01306965.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65] gi|94427468|gb|EAT12446.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65] Length = 524 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 71/350 (20%), Positives = 132/350 (37%), Gaps = 28/350 (8%) Query: 98 NVILIGHDGKQMLNLDILIERDIAHL--EMTLRRFIADSNIRVEMVSD-----TVVLHGM 150 NV G G + + I + A T + S I+ SD + + Sbjct: 145 NVTRTGSSGLTVSSGQITSKNTSADNVNSTTASQLSTASKIQTTASSDFWQTLKTSITTL 204 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V + + + V+ S+ L S+ ++ ++ ++ QV ++ I EV + Sbjct: 205 VGSSEGRKVIVD-SQASLVVVRAFPNEISAVEQFLDKAQLSLNKQVIIEAKILEVTLNDG 263 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 Q G Q SS + + + D F V+ L+R ++ Sbjct: 264 YQAGIQWDGLASSGSTEFTPSLSATTLRNPDDIDGIFSLAFTGSDFTGVIQLLKRQGKVQ 323 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----------GATSVTTHDYGVVLHFT 319 L+ P ++ ++ Q A G + T S+ ++T G+ L T Sbjct: 324 VLSSPRISTVNNQKAVIKVGTDEFFVTDVSNDTTTTTTTTSTNPEVTLTPFFSGIALDVT 383 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSYRVRKADTTVELPSGGTIVL 370 P + + L + V+E V ++ +R+ D+ + +G +V+ Sbjct: 384 PQISENNDVILHVHPSVTEVVERNKVIELGDDIFNLPLAVSSIRETDSIIRARNGQVVVI 443 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GLL+D + +P L++IPILGALFR S ++E+ I P +V Sbjct: 444 GGLLQDKQSRTDASVPWLARIPILGALFRQSDQESTKSELVILLQPKVVD 493 >gi|57169056|ref|ZP_00368183.1| general secretory pathway protein D [Campylobacter coli RM2228] gi|305432265|ref|ZP_07401428.1| general secretory pathway protein D [Campylobacter coli JV20] gi|57019514|gb|EAL56205.1| general secretory pathway protein D [Campylobacter coli RM2228] gi|304444613|gb|EFM37263.1| general secretory pathway protein D [Campylobacter coli JV20] Length = 472 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 106/260 (40%), Gaps = 16/260 (6%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + L + QV + V+I V + G S + + + G Sbjct: 205 LQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNFNIGLNSQTSDNTNSFMQIQNGQGF 264 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 G+ +F+++++ L ++ L+ P L A++ Q A + G Y+ SS G Sbjct: 265 VKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKESSKGT 324 Query: 305 TSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-------GDM 348 + TT G++L+ P + G+I LRI +S+ + Sbjct: 325 ENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIA 384 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P +K + V++ + T++L GL+ + Q + LSKIPILG+LFR+ N T Sbjct: 385 PDTIQKKLSSVVQVENNQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNIT 444 Query: 409 EIFIAATPFLVKPVAMRDLS 428 EI TP +V + L Sbjct: 445 EIVFIITPSIVDNTHIPSLR 464 >gi|229525096|ref|ZP_04414501.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426] gi|229338677|gb|EEO03694.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426] Length = 554 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 97/263 (36%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247 QV L+ I EV Q G S SS+G S + + + S S Sbjct: 268 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSSGNPITSALPG 327 Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 328 LDAIGSLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 387 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 T SS + ++T G+ L TP + G + L + V E Sbjct: 388 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKI 447 Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + + +P L +P LG Sbjct: 448 ITYNSQEITLPLARSSIRESDSVIRAKDGDVVVIGGLMKTNTIERVSKVPFLGDVPGLGN 507 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN ++TE+ I P +V Sbjct: 508 LFRNISNQTQKTELVILLKPTVV 530 >gi|197121096|ref|YP_002133047.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K] gi|196170945|gb|ACG71918.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K] Length = 887 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 64/310 (20%), Positives = 110/310 (35%), Gaps = 45/310 (14%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 D + G V T + T + A ++ ++ L+ QV ++ I Sbjct: 577 DVLSERGSVSTDE---------RTNVLIVKDIPEALVRAEGLVRNLDTEIP-QVLIESRI 626 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------- 246 E + +Q+G Q S + + + VS G Sbjct: 627 VEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQSPNQGTSSTPNYAVN 686 Query: 247 ----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + F+ L ALE ++T++ P + I + A+ G Sbjct: 687 LPAAIGQGSGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATIDNKEATI--G 744 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMP 349 +S + T + + L TP V + G I L+I+ + P + P Sbjct: 745 QGISIPFSQTSASGVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNSSLTGSNGQP 804 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 S R+A+T V + G T V+ G+ +P LSKIP+LG FR+ + TE Sbjct: 805 SISKREAETEVLVKDGETTVIGGIYTRSTASKTASVPFLSKIPLLGFFFRSDTNTDDHTE 864 Query: 410 IFIAATPFLV 419 + I TP ++ Sbjct: 865 LLIFITPRIL 874 >gi|152988863|ref|YP_001351096.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa PA7] gi|150964021|gb|ABR86046.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa PA7] Length = 714 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 91/269 (33%), Gaps = 35/269 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236 ++++ L+I QV ++ I E K +G + + G Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWNAYGKDGNMGIKDEEG 496 Query: 237 ---------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + + D + L A+E+ Sbjct: 497 LNCGPIAGNCSFPTVGTNKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 +++P + ++A G + Y+ SSS ++ + + + L TP + RI Sbjct: 557 EIISQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + ++ P +P + + + + G TIV+ G+ ++ + + +P L Sbjct: 616 VEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQTKAVDKVPFLG 675 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418 +P LG LFR + E+ + P + Sbjct: 676 DLPYLGRLFRRDTVVDRKNELLVFLAPRI 704 >gi|157415698|ref|YP_001482954.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81116] gi|157386662|gb|ABV52977.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81116] gi|307748339|gb|ADN91609.1| General secretory pathway protein D [Campylobacter jejuni subsp. jejuni M1] gi|315930985|gb|EFV09960.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 327] Length = 470 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S K + L + QV + V+I V + G + Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIGLNSQVNNE 250 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F +F + G G+ +F+++++ L + L+ P L A++ Q A + G Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309 Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Y+ SS G + TT G++L+ P + G+I LRI +S+ Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369 Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + P +K + V++ + T++L GL+ D K I LSKIPILG Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +LF+ N + TEI TP +V V L Sbjct: 430 SLFKGEVLNSKVTEIVFIITPSIVDSVNAPSL 461 >gi|206575908|ref|YP_002236236.1| protein transporter HofQ [Klebsiella pneumoniae 342] gi|206564966|gb|ACI06742.1| protein transporter HofQ [Klebsiella pneumoniae 342] Length = 413 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 5/230 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---FVSEGGDFSVKGVL 251 QV L I + L+++G + + + P + G + Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAETGGSPGSGQITTLSSDMSVNDASTRAGFNIGKI 240 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + E L ALER + +A P L A Q AS G + Y+ S +GATSV + Sbjct: 241 NGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 300 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + TPTVL GR+ L+++ + P V+ + G+ + ++ +T VE+ SG T+ Sbjct: 301 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETLA 360 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 361 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410 >gi|327480391|gb|AEA83701.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166] Length = 644 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 87/466 (18%), Positives = 160/466 (34%), Gaps = 58/466 (12%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI-----ILQ 61 T + + P L + ANA +I+ I + + + L++ +L Sbjct: 142 TSAAELIPLIRPLVPQYGHLAAVSSANALIISDRSANIARIQDLVRQLDRAESNDYGVLN 201 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 + V + K+ +I + + +A Sbjct: 202 LQHGWA--------VDIAEVLRNSLVRGEAKSTAGVQIIADSRTNRLIFIGPSEARSKLA 253 Query: 122 HLEMTL-------------RRFIADSNIRVEMVSD-TVVLH---GMVRTIQDSQRAVELS 164 L TL R D+ E + D + L G T Q + + Sbjct: 254 ALAQTLDTPTTRSANTRVIRLRHNDAKSLAETLGDISEGLKSPEGGEATTSRPQNILIRA 313 Query: 165 ETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + L+ + + ++ L+I QV ++ I EV DI +G Q +I Sbjct: 314 DESLNALVLLADPELIGTMESIVRQLDIP-RAQVMVEAAIVEVSGDITDALGVQWAIDAR 372 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKG--------------VLDRFSFETVLHALERATA 268 + +FG +S G + + SF ++ AL + Sbjct: 373 G-STGGAGGVNFGNTGISVGSVLNAINKNEIPNNLPDGAIIGVGTRSFGALITALSSNSK 431 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPT 321 L+ P+L + Q A G ++T S + T++ D GV L TP Sbjct: 432 SNLLSTPSLLTLDNQEAEILVGQNVPFQTGSYTTDAAGANNPFTTIERQDIGVTLKVTPH 491 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDI 378 + + L+I+ E+S + R +T+ G IVL GL++DD+ Sbjct: 492 INEGATLRLQIEQEISSIAPSASLTAQAVDLVTNKRAIKSTILAEDGQVIVLGGLIQDDV 551 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + +PLL IP+LG LFR+++ + + + P +++ A Sbjct: 552 TRTNSKVPLLGDIPLLGGLFRSTQETHIKRNLMVFLRPTVIRDRAG 597 >gi|308094739|ref|ZP_05891643.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034] gi|308095427|ref|ZP_05905786.2| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466] gi|308125606|ref|ZP_05776206.2| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030] gi|308126551|ref|ZP_05910862.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037] gi|308087223|gb|EFO36918.1| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466] gi|308093091|gb|EFO42786.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034] gi|308109580|gb|EFO47120.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037] gi|308111201|gb|EFO48741.1| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030] Length = 530 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 111/304 (36%), Gaps = 30/304 (9%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202 +L V + S + + T + + ++V L + + QV L+ I Sbjct: 203 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 262 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256 EV Q G S +S G S S + + + +F Sbjct: 263 LEVTLSDGYQQGINWSNLSASIGNSGSIIVNRPASALPPLDAIGTLLGGQTNVTISDGNF 322 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306 E VL+ + + L+ P +TA + Q + G + T SS Sbjct: 323 EAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQYFVTELSSNAGNGENSNAVPEVE 382 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355 +T G+ L TP + + G + L + V E V ++ +R+ Sbjct: 383 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSIRE 442 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +D+ + G +V+ GL+K + +P L +P LG LFRN+ ++TE+ I Sbjct: 443 SDSVIRAKDGDVVVIGGLMKQQNVEQVSKVPFLGDVPALGHLFRNTSNVTQKTELVILLK 502 Query: 416 PFLV 419 P +V Sbjct: 503 PTVV 506 >gi|82778251|ref|YP_404600.1| putative type II secretion protein [Shigella dysenteriae Sd197] gi|81242399|gb|ABB63109.1| putative type II secretion protein [Shigella dysenteriae Sd197] Length = 611 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 241 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 299 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 300 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 359 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 360 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 419 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 420 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 479 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 480 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 537 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 538 KRNLMVFIRPTILRDGMAAD 557 >gi|115350108|ref|YP_771947.1| general secretion pathway protein D [Burkholderia ambifaria AMMD] gi|115280096|gb|ABI85613.1| general secretion pathway protein D [Burkholderia ambifaria AMMD] Length = 777 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 102/294 (34%), Gaps = 35/294 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ I E+ +G Q + Sbjct: 377 IQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQV 435 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER-------------- 265 + A G + + + G L L + Sbjct: 436 ASGQFLGGTNLAPTAGTGLGNSIVNLTSGGTAATTGLAANLAGLSQGLNIGWLHNMFGVQ 495 Query: 266 -----------ATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATS 306 + L+ P L + + A G + ++S + Sbjct: 496 GLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNT 555 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365 D G+ LH P + G + L++ TE S NA P++ R +T+ +G Sbjct: 556 YDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNG 615 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 616 EIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 669 >gi|325295622|ref|YP_004282136.1| type II and III secretion system protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066070|gb|ADY74077.1| type II and III secretion system protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 506 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 112/275 (40%), Gaps = 28/275 (10%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKS 229 K+ ++ +N + QV ++ I EV+ D ++G + G Sbjct: 228 TAKPETLKKVKEFIDTINGISDRQVLIEAKIVEVKLDKRNELGINWKYLTFSNFLGSGGE 287 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + EG F + V +F +L L + + L+ P + A++GQ A Sbjct: 288 YNTISFNSGAPEGKPFQLSIVKVNNTFSGLLGILSQFGKVNVLSSPRILAMNGQPAMIKV 347 Query: 290 GGQHLYKTVSSSTGATSVTTHDY----------------GVVLHFTPTVLSPGRIGLRIQ 333 G +L + +T TS ++ GVVL P + G I L I Sbjct: 348 GRDYLAIYRTQTTSTTSTSSQTATTLTTEEVTTNSILTEGVVLTIIPKIDDKGNIILNIS 407 Query: 334 TEVSEPVIGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +S + G + S +R+ +T V + +G T++L GL+ + KE Sbjct: 408 PAISSLDSPLITGSTGETTDFINKVYSVNIRQLNTVVRVKNGQTVILGGLIAKSKSKEKE 467 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 G+P+L IP+LG F+++ +TE+ I TP++ Sbjct: 468 GVPILQDIPLLGNAFKSTSTISSKTELVIMLTPYV 502 >gi|258592161|emb|CBE68468.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 764 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 110/287 (38%), Gaps = 40/287 (13%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---------- 221 A + + ++I QV ++ I E R + +G Q TG Sbjct: 476 KDLPEAVERMEAFLKQIDIPTP-QVLIEARIVEATRKFSQSLGIQWGGTGIPTKSGSGTG 534 Query: 222 ----SSSGPSKSFAADFGGKFVSEGG---------------------DFSVKGVLDRFSF 256 + S F + G + GG ++ + +RF Sbjct: 535 ATVFGGTTNSLQFPTNSGLPTTTGGGIPFGSVPLALNLPATSPHLAIGMTIGSLANRFLV 594 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 L E IRTL+ P + + A G Q Y ++G T V D + L Sbjct: 595 GAQLSVAENQGKIRTLSSPRVATQDNEEAEIKQGTQVPYT-TIDASGRTVVQFQDAFIKL 653 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P + GR+ ++++ E S P VN G + RKA T + + +G T+V+ GLL Sbjct: 654 KVKPHITPDGRVAMKVEAERSFPGQQVNFSGGFVFPINTRKATTNIMVQNGSTVVIGGLL 713 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIFIAATPFLVK 420 + + + +P+L IPILG LF+ E E+ I TP +++ Sbjct: 714 QSSETIISDQVPVLGDIPILGWLFKRRAIGPDERVELLIFLTPSVLQ 760 >gi|167838164|ref|ZP_02465023.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 572 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 75/432 (17%), Positives = 139/432 (32%), Gaps = 39/432 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P ANA + E G + IS+ L + + V Sbjct: 145 APRPDTEVTAANANAGAKTEAAAESGDDRAISLNLQQASLAAVFDAFAR-FTGLNIVVSE 203 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V ++ L A L+ G ++ +A L R+ + Sbjct: 204 RVRGMVSLRLNNVPWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 260 Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191 + + V + L Q ++ + + NLL + Sbjct: 261 RAAQLEPLASRSFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 320 Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227 QV ++ I E R + +G + I +G Sbjct: 321 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRATGIVAGRNGTL 380 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 A G F + ++ + L LE + ++ P + A Sbjct: 381 ADLTARPIGGFDAATAGLTLFAARASRLLDVELSVLEAQGRGQIVSSPRVVTADRTKAIV 440 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + ++++ +G Sbjct: 441 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DIAKDSVGEETAS 497 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + Sbjct: 498 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 557 Query: 408 TEIFIAATPFLV 419 +E+ + TP +V Sbjct: 558 SELVVYITPTVV 569 >gi|146282151|ref|YP_001172304.1| general secretion pathway protein D [Pseudomonas stutzeri A1501] gi|145570356|gb|ABP79462.1| general secretion pathway protein D [Pseudomonas stutzeri A1501] Length = 644 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 87/466 (18%), Positives = 160/466 (34%), Gaps = 58/466 (12%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI-----ILQ 61 T + + P L + ANA +I+ I + + + L++ +L Sbjct: 142 TSAAELIPLIRPLVPQYGHLAAVSSANALIISDRSANIARIQDLVRQLDRAESNDYGVLN 201 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 + V + K+ +I + + +A Sbjct: 202 LQHGWA--------VDIAEVLRNSLVRGEAKSTAGVQIIADSRTNRLIFIGPSEARSKLA 253 Query: 122 HLEMTL-------------RRFIADSNIRVEMVSD-TVVLH---GMVRTIQDSQRAVELS 164 L TL R D+ E + D + L G T Q + + Sbjct: 254 ALAQTLDTPTTRSANTRVIRLRHNDAKSLAETLGDISEGLKSPEGGEATTSRPQNILIRA 313 Query: 165 ETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + L+ + + ++ L+I QV ++ I EV DI +G Q +I Sbjct: 314 DESLNALVLLADPELIGTMESIVRQLDIP-RAQVMVEAAIVEVSGDITDALGVQWAIDAR 372 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKG--------------VLDRFSFETVLHALERATA 268 + +FG +S G + + SF ++ AL + Sbjct: 373 G-STGGAGGVNFGNTGISVGSVLNAINENEIPNNLPDGAIIGVGTRSFGALITALSSNSK 431 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPT 321 L+ P+L + Q A G ++T S + T++ D GV L TP Sbjct: 432 SNLLSTPSLLTLDNQEAEILVGQNVPFQTGSYTTDAAGANNPFTTIERQDIGVTLKVTPH 491 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDI 378 + + L+I+ E+S + R +T+ G IVL GL++DD+ Sbjct: 492 INEGATLRLQIEQEISSIAPSASLTAQAVDLVTNKRAIKSTILAEDGQVIVLGGLIQDDV 551 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + +PLL IP+LG LFR+++ + + + P +++ A Sbjct: 552 TRTNSKVPLLGDIPLLGGLFRSTQETHIKRNLMVFLRPTVIRDRAG 597 >gi|260424842|ref|ZP_05733440.2| bacterial type II and III secretion system protein [Dialister invisus DSM 15470] gi|260403342|gb|EEW96889.1| bacterial type II and III secretion system protein [Dialister invisus DSM 15470] Length = 449 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 73/392 (18%), Positives = 135/392 (34%), Gaps = 75/392 (19%) Query: 77 ADVVVHSPRTMY--------LFGKNVGQANVIL----IGHDGKQMLNLDILIERDIAHLE 124 AD+ +P+ L + G +++ + + G+ + + + + Sbjct: 84 ADLDHVTPKEALHAMLVSQGLIAREEGSTLIVVGESAMKNGGRATKSYKL-SYAEAKEVA 142 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 LR+ ++ ++ V+L G +E+ ET V Sbjct: 143 EGLRQLSDSVHVAYNQTANAVILSGTP---------LEIMETAA---------------V 178 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------------------ 226 + L++ E QV ++ + V R K++G + Sbjct: 179 LRSLDVP-EKQVKVEAEVIAVNRSHSKELGIDWDFKALTGSGEYRRESWNEQRYVTDDAG 237 Query: 227 ----------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 + + SV G F L+AL R Sbjct: 238 NIKYDKNGNPRMRNIEHNGWNVKIPEGYAGISYGRSVAGHPYTAFFRANLNALVSTGKAR 297 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328 LA P + ++G+ A G + G T+ D G+ L +TP + + G I Sbjct: 298 ILARPNVVTMNGREAEILIGNKIPVIVEHVDNGVRTTTTEYRDAGIKLTYTPRISADGEI 357 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + EVS P + V R+A+T V L SG + + GL+ + + +P+L Sbjct: 358 TANVNAEVSTPYL-VPEMRAYRIITRQANTLVRLRSGDMLTIGGLIDKEENKTFRKVPIL 416 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+LG LF++ + EE+EI I ++ Sbjct: 417 GDIPLLGKLFQSKSRSVEESEIVIIIKAEILD 448 >gi|86151899|ref|ZP_01070112.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 260.94] gi|148925643|ref|ZP_01809331.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni CG8486] gi|315124908|ref|YP_004066912.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841007|gb|EAQ58256.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 260.94] gi|145845653|gb|EDK22744.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni CG8486] gi|315018630|gb|ADT66723.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 470 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S K + L + QV + V+I V + G + Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQVNNE 250 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F +F + G G+ +F+++++ L + L+ P L A++ Q A + G Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309 Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Y+ SS G + TT G++L+ P + G+I LRI +S+ Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369 Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + P +K + V++ + T++L GL+ D K I LSKIPILG Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +LF+ N + TEI TP +V V L Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461 >gi|222053997|ref|YP_002536359.1| general secretion pathway protein D [Geobacter sp. FRC-32] gi|221563286|gb|ACM19258.1| general secretion pathway protein D [Geobacter sp. FRC-32] Length = 637 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 106/256 (41%), Gaps = 19/256 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------DFGG 236 +V+ L+ QV ++ IAEV D +++G Q + G +S + + A FG Sbjct: 345 QVIQKLD-RRNRQVFVQAMIAEVSIDRARELGVQWGVIGGASNGTVATAGIYDPFGTFGA 403 Query: 237 ------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G S + +F +L AL+ A+ L+ P + + A G Sbjct: 404 LAPIIKSLGEAGIGTSSLNLAGAATFPAILKALQSNGALNVLSTPNIMTSDNKEAEIFVG 463 Query: 291 GQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + T S+ + D G+ L P V + L I E+S +N G Sbjct: 464 ENVPFLTQSNLSSTGLAQQGIERKDTGITLKIKPMVSEGEYVKLDIYQEISAVKDALNKG 523 Query: 347 DMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 R A T+V + T+V+ GL++D Q+ IP L IP+LG LF+ Sbjct: 524 AAVDITTTKRSAKTSVVVKDTDTVVIGGLIQDQDQETINKIPFLGDIPLLGYLFKTKSMK 583 Query: 405 REETEIFIAATPFLVK 420 R +T + I TP+++K Sbjct: 584 RTKTNLMIILTPYIIK 599 >gi|86153104|ref|ZP_01071309.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613593|ref|YP_001001123.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81-176] gi|167006016|ref|ZP_02271774.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81-176] gi|85843989|gb|EAQ61199.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249586|gb|EAQ72545.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81-176] gi|315058928|gb|ADT73257.1| Type II secretion outermembrane pore forming protein (PulD) [Campylobacter jejuni subsp. jejuni S3] Length = 470 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S K + L + QV + V+I V + G + Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQVNNE 250 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F +F + G G+ +F+++++ L + L+ P L A++ Q A + G Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309 Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Y+ SS G + TT G++L+ P + G+I LRI +S+ Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369 Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + P +K + V++ + T++L GL+ D K I LSKIPILG Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +LF+ N + TEI TP +V V L Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461 >gi|134294486|ref|YP_001118221.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4] gi|134137643|gb|ABO53386.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4] Length = 550 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 57/308 (18%), Positives = 110/308 (35%), Gaps = 34/308 (11%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197 + L Q ++ +++ MNLL + QV Sbjct: 226 RAADVQRLLAGATGQRLLSRRGAAAADPRMNLLFVTDLAPRIAQIAELIDAIDRASRQVR 285 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGGD 244 ++ I E + + +G + ++ + A G F + Sbjct: 286 IEARIVEGEQGFSRNLGARVALRAHGRAPAADGAAAATDTRNALDLTARAIGGFDAATAG 345 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F++ + L ALE + ++ P + A G + Y+ G Sbjct: 346 FTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSEVPYQ-AKVGNGV 404 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P + GR+ L + +V++ IG P+ + T VE+ Sbjct: 405 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVED 462 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 GGT+ + G+ + + +PLL +IP+LGALFR+ + + E+ + TP +V Sbjct: 463 GGTVAIGGIYEQLRRDDVTHVPLLGRIPVLGALFRHRARSDQRNELVVFITPTVVGARCD 522 Query: 425 RDLSRPDD 432 ++ D Sbjct: 523 PAVTSDAD 530 >gi|288933223|ref|YP_003437282.1| type IV pilus secretin PilQ [Klebsiella variicola At-22] gi|288887952|gb|ADC56270.1| type IV pilus secretin PilQ [Klebsiella variicola At-22] Length = 412 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 5/230 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---FVSEGGDFSVKGVL 251 QV L I + L+++G + + + P + G + Sbjct: 180 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNIGKI 239 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + E L ALER + +A P L A Q AS G + Y+ S +GATSV + Sbjct: 240 NGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 299 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + TPTVL GR+ L+++ + P V+ + G+ + ++ +T VE+ SG T+ Sbjct: 300 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETLA 359 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 360 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 409 >gi|17223826|gb|AAL10693.1| hypothetical type II secretion protein [Escherichia coli ETEC H10407] Length = 616 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 246 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562 >gi|121593092|ref|YP_984988.1| general secretion pathway protein D [Acidovorax sp. JS42] gi|120605172|gb|ABM40912.1| general secretion pathway protein D [Acidovorax sp. JS42] Length = 781 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 101/270 (37%), Gaps = 34/270 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ I EV + + G Q + G + + D ++ Sbjct: 431 GRRAQVLIESLIVEVSASKVAEFGIQWQGVLGNYGSTLGVLGNNSSVAGRNILDLALAAA 490 Query: 251 LDRFS------------------------FETVLHALERATAIRTLAEPTLTAISGQSAS 286 + + + LE L+ P L + + A Sbjct: 491 TGNVTSIANAKPAAGMNLAVAPRINGKYYLGALANFLENTGDANVLSTPNLLTLDNEEAQ 550 Query: 287 FTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 G + T S + T+V D G++L P + G + L + EVS Sbjct: 551 IIIGNNVPFVTGSYANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTVKLTMYQEVS 610 Query: 338 EPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + + + PS R ++TV + G IV+ GLL+D+ ++ +P++ +P++G Sbjct: 611 KVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALGQDKVPVMGDLPVVGG 670 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LFRN + R++T + + P +++ A D Sbjct: 671 LFRNEKRTRQKTNLMVFLRPMVIRDSATSD 700 >gi|153952576|ref|YP_001398775.1| general secretory pathway protein D [Campylobacter jejuni subsp. doylei 269.97] gi|152940022|gb|ABS44763.1| general secretory pathway protein D [Campylobacter jejuni subsp. doylei 269.97] Length = 470 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 107/272 (39%), Gaps = 17/272 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S K + L + QV + V+I V G + Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLSESHSSGINWQNFDIGLNSQANNE 250 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F +F + G G+ +F+++++ L + L+ P L A++ Q A + G Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309 Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Y+ SS G + TT G++L+ P + G+I LRI +S+ Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369 Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + P +K + V++ + T++L GL+ D K I LSKIPILG Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +LF+ N + TEI TP +V V L Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461 >gi|262192447|ref|ZP_06050599.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93] gi|262031711|gb|EEY50297.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93] Length = 707 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 117/314 (37%), Gaps = 29/314 (9%) Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHG----------MVRTIQDSQRAVELSETFLSQSGR 173 + + +I ++ L G +++ + + Sbjct: 378 KSKASQDTPKQDIIAAAKQESTSLPGNTGYQPRTSNSSQSMSVVSANYRVVIDTKRNALI 437 Query: 174 NQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 Q + ++++ LL QV L+ T+AEV+ + +G + + Sbjct: 438 FQGQYADYQRLIELLKFVDQRPRQVLLQATVAEVKVEDGFTLGTEF-------NITSGDI 490 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 ++ G+ ++ GV A + + L+ P + A+ + A + G Sbjct: 491 TGGSNGLIANAGNLNLNGVFG--DVTAKFTAALDSGKAQVLSSPRVIAMDQEPARISIGE 548 Query: 292 QHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Q KT S G + D G+ L TPT+ G + L I EVS GV Sbjct: 549 QIQVKTGEVSGGGDDSKATVTYQYVDVGITLDITPTINQNGLVELSISQEVS--SQGVIT 606 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 GD R T + SG TI + GL+ D + +P+L IP++G LF+ + Sbjct: 607 GDSIPINKRSLQTRMLADSGDTIYMGGLISKDNNNSENKVPILGDIPLIGNLFKYRVEKQ 666 Query: 406 EETEIFIAATPFLV 419 TE+ + TP+++ Sbjct: 667 NSTELVLLITPYVI 680 >gi|148269971|ref|YP_001244431.1| type II and III secretion system protein [Thermotoga petrophila RKU-1] gi|147735515|gb|ABQ46855.1| type II and III secretion system protein [Thermotoga petrophila RKU-1] Length = 1282 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 66/345 (19%), Positives = 135/345 (39%), Gaps = 35/345 (10%) Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIR 137 V + S YLF G V ++ + + + + ++ + + Sbjct: 971 VDLISQNYGYLFDNKSG---VYVLSKPKQDLARRYVYDVPHNFDQIKALIE--FYGGTVY 1025 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V+ +++ +V+ G+ TI ++ L Q+ Sbjct: 1026 VDSLNNFMVVTGISETI-----------------------KKELDNIIEKLK-KPTKQIE 1061 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSF 256 + I V R ++ ++ + + + + + V++ DF + G + + Sbjct: 1062 ISAKI--VDRSLIDRLSKEAGLELTGGNVNVGSSGAGISFSVTDYLDFEKIFGGILNSNL 1119 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 + T LA P + SG+ A G + Y T ++ G V + G+ L Sbjct: 1120 SLQFSDQKTNTLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIEL 1179 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 + TP V S I L + + SEP +N ++P R R+ T + + +G TI + GL+++ Sbjct: 1180 NITPFVRSDDTIELDLFVKASEPGNYIN--EVPGERTRETQTHLIVKNGSTITIGGLIRE 1237 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +P L +P++G FR N+E+ ++ I T +V+P Sbjct: 1238 VTNVTESKLPFLGDLPVIGQFFRTKSENKEKRDLIIFLTVRVVEP 1282 >gi|47155035|emb|CAE85234.1| GspD, hypothetical type II secretion protein [Escherichia coli] Length = 616 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 246 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562 >gi|320181011|gb|EFW55932.1| General secretion pathway protein D [Shigella boydii ATCC 9905] Length = 686 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 58/318 (18%), Positives = 112/318 (35%), Gaps = 44/318 (13%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 318 TVGSGREIVSISASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAEGS 376 Query: 210 LKQIGFQHSITGS--------------------------------SSGPSKSFAADFGGK 237 G Q + + S + + D G Sbjct: 377 NINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTNGD 436 Query: 238 FVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 437 LSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDV 496 Query: 294 L-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 ++S +V G++L TP + + + I+ EVS+ + + Sbjct: 497 PVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV 556 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E+ Sbjct: 557 --FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKR 614 Query: 409 EIFIAATPFLVKPVAMRD 426 + + P +++ D Sbjct: 615 NLMVFIRPTILRDGMAAD 632 >gi|145298152|ref|YP_001140993.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp. salmonicida A449] gi|142850924|gb|ABO89245.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp. salmonicida A449] Length = 693 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 98/255 (38%), Gaps = 30/255 (11%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--------------------- 232 QV ++ + + + +G + +T + + + + Sbjct: 436 KQVVIEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGSIEGNDGSGNNNGGSAITRPGV 495 Query: 233 ------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + + F V + D + L ALE+ + +A P +T + + A Sbjct: 496 EDRMNVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEIIASPRVTTANQKPAL 555 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 G + Y SS+GATSVT + L TP + R+ L + + Sbjct: 556 IEQGTEIPYVES-SSSGATSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTG 614 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 GD S + T V + +G T+VL G+ + I+ +PLL IP LG LFR + Sbjct: 615 TGDAVSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSE 674 Query: 405 REETEIFIAATPFLV 419 ++ E+ I TP +V Sbjct: 675 NKKRELLIFVTPKIV 689 >gi|153825669|ref|ZP_01978336.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2] gi|229520028|ref|ZP_04409457.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80] gi|297580540|ref|ZP_06942466.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385] gi|149740699|gb|EDM54806.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2] gi|229342977|gb|EEO07966.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80] gi|297534956|gb|EFH73791.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385] Length = 559 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 98/263 (37%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247 QV L+ I EV Q G S SS+G S + + + S SV Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSSGNPITSVLPG 332 Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344 T SS + ++T G+ L TP + G + L + V E Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452 Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535 >gi|307131207|ref|YP_003883223.1| type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) [Dickeya dadantii 3937] gi|306528736|gb|ADM98666.1| Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) [Dickeya dadantii 3937] Length = 689 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 67/449 (14%), Positives = 138/449 (30%), Gaps = 38/449 (8%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99 G + +++ N + D + V++ A V + + + + G A + Sbjct: 158 TGPAEYVNLIRNFSQQRETKEDRRKVMIFPLRYASVSDRTIQYRDQRLVI----PGVATI 213 Query: 100 I--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL-------HGM 150 + L+ + M + ++ +L G Sbjct: 214 LNELMDGNRNTPAGASAAASGMGNDGAMAAASGGGQDASQAIELNARAMLARLATRSSGG 273 Query: 151 VRTIQDSQRAV--ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVR 206 + + ++S + + + + L++ Q V + I +V Sbjct: 274 ATAAARKKDQLNGKVSADVRNNALLIRDDEKRRDEYQQLIDKIDVPQNLVNIDAIILDVD 333 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 R L ++ + + + FVS D F + ALE Sbjct: 334 RTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS-----------DFKRFFADIQALEGE 382 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P++ + Q A +V G L TP V+ G Sbjct: 383 GTASIVANPSVLTLENQPAVIDFSRTAFITAT--GERVANVQPVTAGTSLQVTPRVVGRG 440 Query: 327 RIG-LRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + +++ ++ + + N S R T + +VL G ++ + Sbjct: 441 SLSSIQLVIDIEDGQVETNTEGTASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDKR 500 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP +G LF + + E TP L+ D+ +DA Sbjct: 501 VPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSADNRRQLNDAMGRV 560 Query: 445 FNRVNK--IYGPKEASEVEGQNYKGAIGF 471 R +K ++ E++ E + + GF Sbjct: 561 AQRNSKTDLFSVVESAMRELASGQTPAGF 589 >gi|218670938|ref|ZP_03520609.1| putative pilus assembly protein [Rhizobium etli GR56] Length = 186 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 93/177 (52%), Positives = 121/177 (68%), Gaps = 4/177 (2%) Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + S G +V +YG+ L F P VLS GRI L I+T VSEPV G Y+ R A+ Sbjct: 14 TTDSDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNAT---YQRRSAE 70 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+ETE+ I ATP+ Sbjct: 71 TSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPY 130 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G+IGFIYK Sbjct: 131 LVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGFIYK 186 >gi|254291307|ref|ZP_04962101.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226] gi|150422763|gb|EDN14716.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226] Length = 559 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 98/263 (37%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247 QV L+ I EV Q G S SS+G S + + + S SV Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGAITQDSSGNPITSVLPG 332 Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344 T SS + ++T G+ L TP + G + L + V E Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452 Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535 >gi|300721146|ref|YP_003710414.1| putative transport protein [Xenorhabdus nematophila ATCC 19061] gi|297627631|emb|CBJ88152.1| putative transport protein, possibly in biosynthesis of type IV pilin (fragment) [Xenorhabdus nematophila ATCC 19061] Length = 325 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 6/229 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--L 251 QV + I R+ L ++G +T S + V + Sbjct: 96 QQVQIIAHIVTSSREALHELGIHWGVTADPVNRSLGLNRLNLHQPAGSQRHRLVLNTARI 155 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 E L ALE+ + +A P LTA AS G + V T++ + Sbjct: 156 HANLLEMELSALEQENQLDIIASPRLTASHQHPASIKQGSEIP--YVVQDKDKTTIQFKE 213 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + TP +L G+I L ++ + P + + + ++ T V + +G T++ Sbjct: 214 AVLGMEVTPHILREGKIRLALKISQNAPGFPVSQGGNENLAIDKQEIMTQVTVRNGETLI 273 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L G+ + ++ +P LS IP+LG LF + E+ I TP L Sbjct: 274 LGGIFQQKKVASQQKVPYLSDIPLLGTLFNQNGEQHSRRELVIFITPQL 322 >gi|170728738|ref|YP_001762764.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC 51908] gi|169814085|gb|ACA88669.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC 51908] Length = 562 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 102/252 (40%), Gaps = 24/252 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADFGGKFVSEGGDFSVKGV-- 250 QV L+ I EV Q G + G + SF G +S+ ++ GV Sbjct: 284 RQVILEAKILEVTLSDGYQQGIEWQNVLGHVGDTDISFGTSPSGSGLSDSITSAIGGVTS 343 Query: 251 --LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------ 302 + F T+++ L+ + L+ P +TA + Q A G + T SST Sbjct: 344 MKISGADFTTMINLLDTQGDVDVLSSPRVTATNNQKAVIKVGKDEYFVTDVSSTTVAGTT 403 Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY------- 351 +T G+ L TP + G I L I V + Sbjct: 404 PVTSPEVELTPFFSGIALDVTPQIDGEGNILLHIHPSVINIKEQTKTIKISGSELELPLA 463 Query: 352 --RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++DT ++ +G +V+ GL+K + L +PLL IP++G LF N + ++TE Sbjct: 464 QSDIRESDTVIKAKTGEVVVIGGLMKSENIDLVSKVPLLGDIPLVGELFTNRSKSLQKTE 523 Query: 410 IFIAATPFLVKP 421 + + P +V+ Sbjct: 524 LVLLLKPTVVEA 535 >gi|240136813|ref|YP_002961280.1| putative General secretion pathway protein D [Methylobacterium extorquens AM1] gi|240006777|gb|ACS38003.1| putative General secretion pathway protein D [Methylobacterium extorquens AM1] Length = 792 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 21/291 (7%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIG 214 + A+ + + S + K++ +L A QV L+ IAEV + Q G Sbjct: 461 RRDAIGVVADEANNSLVISATRNQYDKILRILGRLDAMPMQVLLETVIAEVTLNNELQFG 520 Query: 215 FQHSITGS-----------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 Q + S + ++ + + G +L+ F VL+AL Sbjct: 521 VQWFLKNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNAL 580 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVL 316 + T + ++ P +T + ++A G Q S + + D GV+L Sbjct: 581 QGVTRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVIL 640 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 TP V G + L I EVS+ V + + P+ R R+ T+V + G ++ + G+++ Sbjct: 641 SVTPRVNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAINDGHSLAIGGMVQ 700 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + Q E +P+L +PI+G FRN R TE+ + P +++ D Sbjct: 701 EKAQITNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEAD 751 >gi|294146464|ref|YP_003559130.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] gi|292676881|dbj|BAI98398.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] Length = 385 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 95/402 (23%), Positives = 142/402 (35%), Gaps = 79/402 (19%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + ++ + + L P + V V + S R++ L G A Sbjct: 10 LATVAQTALQVKEQRTLSYPRAIGRVEVDREGVLSIAAPSARSLRLTAIGEGAAT----- 64 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + V ++ V D+ + + Sbjct: 65 --------------------------------VSVYGGDGGLMAREPVSVAPDAAASAPI 92 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 GE V + V A V LK +GF S Sbjct: 93 VRA-------------------------GEQVVAVDVQFAAVSATTLKALGFNFSKLSGD 127 Query: 224 SGPSKSFAADFGGKFVSEGG-----------DFSVKGVLDRFSFETVLHALERATAIRTL 272 + + G + G F++ VL AL + L Sbjct: 128 IQGAIVSPSSLGSASFNPDGLALEASAPIQNAFNLFLSAPNRGIGAVLSALSSNGLSQLL 187 Query: 273 AEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 A+PTL SG+ ASF +GG+ VS S S+ ++GV L TP VLS I L Sbjct: 188 AQPTLLVRSGEQASFLAGGEFPVPVPQVSGSGNTLSIQYKEFGVRLSVTPFVLSKDHIVL 247 Query: 331 RIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 +I EVSE + + +P R R A+TTVEL SG + V+AGL KE P Sbjct: 248 KIAPEVSELDYNNGVQLQGYVVPGLRRRSAETTVELGSGQSFVIAGLSYSSQTVTKEKTP 307 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 L IP+LGA F+ + +E+ E+ I ATP LV P+ ++ Sbjct: 308 LFGDIPVLGAFFKRQQNQKEKQELIIVATPRLVGPMKPEEVP 349 >gi|18139873|gb|AAL60184.1|AF426313_4 hypothetical type II secretion protein GspD [Escherichia coli] Length = 616 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 246 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562 >gi|301058098|ref|ZP_07199150.1| general secretion pathway protein D [delta proteobacterium NaphS2] gi|300447730|gb|EFK11443.1| general secretion pathway protein D [delta proteobacterium NaphS2] Length = 749 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 65/338 (19%), Positives = 133/338 (39%), Gaps = 25/338 (7%) Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-T 153 G+A+ + G+ + + E++ A ++ A + L G V T Sbjct: 404 GEASTQVQGNPFSKAKVAEKKAEKEAAKAGEPTKKRAAGEKGAAASGEGSTTLMGEVTIT 463 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + + A+ + ++++ ++I QV ++ TIAEV D Q Sbjct: 464 PDEIRNALII--------EATPSDYKIIEEMLKKIDI-MPRQVLIQATIAEVTLDSSTQF 514 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G ++++ ++ + +F A G + + + L AL + ++ Sbjct: 515 GVEYALGHGAAVGNAAFMATLGSGGLQYSVGVT-------NKWYAELTALATKGKLNVIS 567 Query: 274 EPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 P + A Q A + + ++ T++ D GV+L TP + G Sbjct: 568 SPHVLASDNQEAKIDVSREIPLASGTTNVSSGTTISETTIEYRDTGVILSVTPHINERGL 627 Query: 328 IGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + + + EVS E V + P++ R TT+ + G TI + GL++D + G+ Sbjct: 628 VTMDVDEEVSNYEGNQPVAGNEYPTFSKRVVKTTLTVGHGQTIAIGGLIRDRENEETRGL 687 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 P L +P++ L + E+ E+ + TP +V + Sbjct: 688 PCLVDVPVVKYLTGSWNKETEKIELIVLITPRVVANMD 725 >gi|332524328|ref|ZP_08400549.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2] gi|332107658|gb|EGJ08882.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2] Length = 719 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 97/269 (36%), Gaps = 41/269 (15%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------------------- 225 QV ++ I E + +G + + Sbjct: 452 RQVMIEARIVEADDTFGRALGVKLGANAAPKFYNNGGVGVGVGGNYDDVGYQTGQLLKDP 511 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 P+ +++F G + S+ L ALE + ++ P Sbjct: 512 GFNSTQFVNLPANISSSNFSGVTSAPTFAVSLFNSSLTRFLNLELSALEADGKGKIVSSP 571 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + + A G + Y+ +SS GATS++ + L TP + G + L + Sbjct: 572 RVITADQEKALIEQGEELPYQESTSS-GATSISFRKASLKLEVTPQITPEGNVILD--VD 628 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V++ +G + + + T V + +GGT+V+ G+ +PLL IP LG Sbjct: 629 VNKDSVGRSTAAGFAIDTKHVKTKVLVENGGTVVIGGIYTQSESTDVSKVPLLGDIPGLG 688 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424 LFR++ +TE+ + TP +V A Sbjct: 689 VLFRSTTRTSSKTELLVFLTPKIVTDRAA 717 >gi|73542913|ref|YP_297433.1| type II and III secretion system protein:NolW-like [Ralstonia eutropha JMP134] gi|72120326|gb|AAZ62589.1| type II and III secretion system protein:NolW-like [Ralstonia eutropha JMP134] Length = 804 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 108/312 (34%), Gaps = 39/312 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 A QV ++ I EV Q+G Q + SSSG + FA G + ++ G Sbjct: 432 ARRAQVYIESMIVEVTSTQASQLGIQWQGLLSSSSGNNNVFAGTNFGTGGQNILNLTLAG 491 Query: 250 VLDRFSFETVLHALER----------------------------ATAIRTLAEPTLTAIS 281 L + + A ++ ++ L+ P L + Sbjct: 492 ALYNSNHSAGIVAAQQLVPDVGGLNLGVVNKALGLGALLRALGTNGSVNLLSTPNLITLE 551 Query: 282 GQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + A G T S + T + D G+ L P + G + ++I Sbjct: 552 NEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVRPQITDGGLVKMQIF 611 Query: 334 TEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 E S V G P+ VR +T V + G IVL GL++D + +PLL IP Sbjct: 612 QESSSVVPGTLTQVQGPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDGVQKVPLLGDIP 671 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD-HYSVEDDAKAFFFNRVNKI 451 +G LFR NR +T + + P++++ D D Y N + + Sbjct: 672 WIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAADRLTQDRYDYMRAQQTDFVSPNIMVRD 731 Query: 452 YGPKEASEVEGQ 463 + Sbjct: 732 ANTPVLPPADAP 743 >gi|326572695|gb|EGE22682.1| general secretion pathway protein D [Moraxella catarrhalis BC8] Length = 428 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 61/283 (21%), Positives = 116/283 (40%), Gaps = 15/283 (5%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + +V +++ + +++ L++ + Q+ ++ I E+ Sbjct: 116 QMLNSLSISDSVAVADISSNAVIVRNDNAFDFAQIIKSLDV-NKKQILIQAVILELSDTD 174 Query: 210 LKQIGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-------DRFSFETVLH 261 K +G Q + G+ G A ++ SV G L + VLH Sbjct: 175 TKNLGVQWAAGNGAGYGVVNFNPAVSLTNALAGNKSLSVLGALFGYKKNDGNKFYGAVLH 234 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLH 317 ALE + L+ P++ ++ ++AS G T S +++ D G+ L Sbjct: 235 ALEHTSNANLLSMPSVLSLDNEAASILIGQNIPVITGSQLDRNGEPFKTISRLDVGISLK 294 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + RI +++ EVS V N G + DT + +G IVL GL++D+ Sbjct: 295 VTPQITDDNRINMKVYQEVSNVVNTTNDGVV--TNKSVIDTNILSGNGEVIVLGGLMRDE 352 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +G+P LSK+P LG F+ + +++ + I P ++ Sbjct: 353 TTTTVQGVPKLSKLPFLGKAFKADLDSAKKSNLVIFLQPTIID 395 >gi|226193920|ref|ZP_03789521.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9] gi|225933865|gb|EEH29851.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9] Length = 566 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 72/283 (25%), Positives = 137/283 (48%), Gaps = 11/283 (3%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 94 GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 G G +D+ + D L+ +LR+ + +IRV +DT+VL G V + Q +Q+A Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212 Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G + Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I G + + ++ G ++ + A ++ LAEP L Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328 Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHF 318 ISGQ A+F +GG+ SS T ++ ++GV Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGAEV 371 >gi|297581573|ref|ZP_06943496.1| general secretion pathway protein D [Vibrio cholerae RC385] gi|297534411|gb|EFH73249.1| general secretion pathway protein D [Vibrio cholerae RC385] Length = 674 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 57/320 (17%), Positives = 115/320 (35%), Gaps = 49/320 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204 G + + V ++ + S +V+ L+I QV ++ I E Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352 Query: 205 VRRDILKQIGFQHSITGSS---------------------------------------SG 225 + +G Q S Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTETKAVYDTDNNFLRN 412 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + + D+ + G + + +++A+ ++ L+ P++T + A Sbjct: 413 ETTTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGEA 472 Query: 286 SFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 SF G + T SS +V + G+ L P + + L+I+ EVS + Sbjct: 473 SFIVGEEVPVITGSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSNVL 532 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR+ Sbjct: 533 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRS 591 Query: 401 SRFNREETEIFIAATPFLVK 420 + E+ + + P +++ Sbjct: 592 TSSQVEKKNLMVFIKPTIIR 611 >gi|90416876|ref|ZP_01224805.1| putative general secretion pathway protein [marine gamma proteobacterium HTCC2207] gi|90331223|gb|EAS46467.1| putative general secretion pathway protein [marine gamma proteobacterium HTCC2207] Length = 629 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 52/302 (17%), Positives = 115/302 (38%), Gaps = 30/302 (9%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAE 204 L G + ++ A ++ L+ + + +++ N++ QV ++ IAE Sbjct: 286 LAGEAVADKKAKAAYQIQIDELNNALVVAAPTAVIREIKNVVAQLDRSRPQVLIEAVIAE 345 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF------------------- 245 + D +++ Q + + + G + G Sbjct: 346 LSEDQAQELSSQLAYSSKNRGGYLTNFDGLLATLTGLGISGVEPTAAELGLLPKKVMAVA 405 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------ 299 ++ AL+ + + L+ P++ + + A+ + G + ++T S Sbjct: 406 GDFDSETGKGIGLLIQALKTDGSTKILSTPSVVTLDNEEATLSVGEEVPFQTGSFTSSNN 465 Query: 300 -SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 S+ T++ + GV L P + + L I+ E S+ GV + T Sbjct: 466 GSNNPFTTINREEVGVKLKVKPQISKGDSVRLEIEQESSKVKSGVPGLQ--TTSKSTMQT 523 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + G ++L GL++D +PLL IP+LG LFR++ ++ + + P + Sbjct: 524 NVLIQDGELLILGGLIEDQTGGSATKVPLLGDIPLLGRLFRSTSKADSQSVLMMFIRPTI 583 Query: 419 VK 420 ++ Sbjct: 584 IR 585 >gi|317407154|gb|EFV87149.1| general secretion pathway protein D [Achromobacter xylosoxidans C54] Length = 870 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 102/272 (37%), Gaps = 29/272 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236 +V++ L+ QV ++ I EV + G Q + + Sbjct: 416 EVIDQLDQR-RAQVLVESLIVEVSEQAAAEFGIQWMTGAGNINSGGTSFIGGTNLGGSGL 474 Query: 237 ------KFVSEGGDFSVKGVLDRF--------SFETVLHALERATAIRTLAEPTLTAISG 282 + G S+ V + + A++ L+ P L + Sbjct: 475 TGTGPTSIDALGSGLSLGVVKGTVDVLGNKVINLGVLARAMQNTGEANILSTPNLLTLDN 534 Query: 283 QSASFTS-------GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 QSAS GQ++ +++ ++ D G+ L+ P + G + L I E Sbjct: 535 QSASILVGKTVPFVTGQYVTNGGNNNNPFQTIQREDVGLKLNIRPQISEGGAVKLDIYQE 594 Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VS +A R DT+V + G IVL GLL+D++ +P LS IP+L Sbjct: 595 VSSIDESRSSATTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLTSNNVPGLSSIPVL 654 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 G+LF+ R +T + + P++V+ Sbjct: 655 GSLFKYDSRKRTKTNLMVFLRPYVVRDARQSA 686 >gi|303229539|ref|ZP_07316327.1| bacterial type II and III secretion system protein [Veillonella atypica ACS-134-V-Col7a] gi|302515664|gb|EFL57618.1| bacterial type II and III secretion system protein [Veillonella atypica ACS-134-V-Col7a] Length = 399 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 75/326 (23%), Positives = 129/326 (39%), Gaps = 36/326 (11%) Query: 99 VILIGHDGKQMLNLDILIERDIAH---LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 V + GH G + +++E +A LE ++ + + V ++ +VL Sbjct: 105 VTVTGHSGAKEHRHVVVVEPKMASSTSLESVIKTVVPNGKFAVHKETNQIVL-------- 156 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 ++ ++ QV L+ TI + K+ GF Sbjct: 157 ----------------NVTGDEEKGVNSIIQSVD-RDMKQVRLEATIMAMEHSYTKETGF 199 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + S D + + + G +F + L LE + +A P Sbjct: 200 RWS-----WLSLTGHGKDKTNSYGAISFGKAPDGEAYKFFVKPELSLLETSGKAVVIATP 254 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 ++ A++G++A G + S S G + + G+ L +TP V G I I+ Sbjct: 255 SIMALNGEAAHILIGERIPVIEESISNGERKRSIHYEEVGIKLDYTPVVTKNGTIDTSIR 314 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 EVS P I V+ R+A T V L G +V+ GL+ + Q+ E IP+L IP+ Sbjct: 315 AEVSSP-IMVSEMKSYKITTRQAQTRVRLQPGEVLVIGGLMDNRDQKQIEKIPILGDIPL 373 Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419 LG LFR+SR ++ E+ I +V Sbjct: 374 LGKLFRHSRKTKDSVEMVILVKATVV 399 >gi|319789878|ref|YP_004151511.1| type II and III secretion system protein [Thermovibrio ammonificans HB-1] gi|317114380|gb|ADU96870.1| type II and III secretion system protein [Thermovibrio ammonificans HB-1] Length = 663 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 97/257 (37%), Gaps = 30/257 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-------- 244 QV +K I ++ K +GF I+G + + + G + Sbjct: 397 SKQVLVKAKIVQLSAKAEKDLGFTWFISGYNRLGDSNLSTYTAGSYGFNTAGYTPLISPD 456 Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + E L ALE + ++ P + + Q AS Sbjct: 457 TYANVSKIPVMDSTLALGILNKAQTLRVELALKALEVDGDAQIISSPKVLTLDNQEASIE 516 Query: 289 SGGQHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IG 342 G + Y + + + ++L P + I L I+ P + Sbjct: 517 QGIEIPYRESTVGAGGATSYRIAFKKASLILKVKPHITKDNNILLDIEVRKDSPNYDYVA 576 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + G+ P+ R + V + +G T+V+ G+ + + + + G+P+LS+IP+LG LF+N Sbjct: 577 ITGGNEPAINTRNVKSRVMIRNGDTVVIGGIYEKERSKSQSGVPVLSRIPLLGWLFKNQT 636 Query: 403 FNREETEIFIAATPFLV 419 ++++ I TP L+ Sbjct: 637 VQVTKSKLLIFITPVLI 653 >gi|294651771|ref|ZP_06729069.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC 19194] gi|292822328|gb|EFF81233.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC 19194] Length = 725 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 100/296 (33%), Gaps = 38/296 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 AV T +K+++LL+++ + QV ++ I D +++G + I Sbjct: 424 AVADVRTNTLIVNDTAQNIDKIRKMVDLLDVSVK-QVMIEARIVRASTDFTREMGVKWGI 482 Query: 220 TGSSSGPSK----------------------------------SFAADFGGKFVSEGGDF 245 + + D G Sbjct: 483 LSQGVTRNNDLLVGGSDTTLWNLREPKKDSETGGWKYEIERPDNLNVDLGATTAGASRIA 542 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTG 303 L F + L A++ ++ P + Q A SG + Y T + + Sbjct: 543 FGLISLSDFMLDLELSAVQADGYGEVISTPKVMTADKQPAKIESGTKIPYSSSTGAGANA 602 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 D + L TP++ G++ +++ P G + + DT V + Sbjct: 603 VPKTEFIDATLSLDVTPSITPDGKVMMKLNITKDAPSNPTPTGQL-TISKNSIDTNVLVD 661 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G T+VL G+ + + + +P L +P +G LFR + E+ I TP +V Sbjct: 662 NGETVVLGGIFEQENISSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIV 717 >gi|330828668|ref|YP_004391620.1| type IV pilus secretin PilQ [Aeromonas veronii B565] gi|328803804|gb|AEB49003.1| Type IV pilus secretin PilQ [Aeromonas veronii B565] Length = 741 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 115/311 (36%), Gaps = 30/311 (9%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 + +L + + AV + E ++ SS K M + QV Sbjct: 428 AKASEVAALLSSESTKLLSPRGAVSVDERTNVLVVKDTADVISSIKRMLDILDIPVKQVV 487 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------------------------- 232 ++ + + + +G + +T + + + + Sbjct: 488 IEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGSIAGNDGSGNNNGGSTITRPTADDRL 547 Query: 233 --DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + + F V + D + L ALE+ + +A P +T + + A G Sbjct: 548 NVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEIIASPRVTTANQKPALIEQG 607 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM 348 + Y SS+GATSVT + L TP + R+ L + + GD Sbjct: 608 TEIPYVES-SSSGATSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDA 666 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 S + T V + +G T+VL G+ + I+ +PLL IP LGALFR + ++ Sbjct: 667 VSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVTKVPLLGDIPGLGALFRKTTSENKKR 726 Query: 409 EIFIAATPFLV 419 E+ I TP +V Sbjct: 727 ELLIFVTPKIV 737 >gi|71900198|ref|ZP_00682337.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] gi|71730031|gb|EAO32123.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] Length = 603 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 99/265 (37%), Gaps = 29/265 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231 DQV ++ I + +G + + +S + Sbjct: 336 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSHVTTADSSTSATRGLN 395 Query: 232 ---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 S + + +F+ + L AL++ + ++ P + + + Sbjct: 396 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 455 Query: 289 SGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341 G + Y T V+ +V + + L TPT+ + R+ L + E+ + + Sbjct: 456 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 515 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+ Sbjct: 516 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 575 Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426 ++++ E+ I TP +++ Sbjct: 576 GKDKQKAELLIFVTPKVLRVANATA 600 >gi|307731499|ref|YP_003908723.1| general secretion pathway protein D [Burkholderia sp. CCGE1003] gi|307586034|gb|ADN59432.1| general secretion pathway protein D [Burkholderia sp. CCGE1003] Length = 782 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 63/346 (18%), Positives = 114/346 (32%), Gaps = 39/346 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ I E+ + +G Q + Sbjct: 373 IQADAATNSLIITAPEPVYRNLRAVIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQV 431 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS-------------------------VKGVLDRF 254 +S + A ++ + + Sbjct: 432 ANNSIFAGTNLATGQSNSIINLTTGAVAAGATGGLASAIATQGVQQGLNIGWIHNIFGVQ 491 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------GATS 306 +L AL + L+ P L + + A G +T S S + Sbjct: 492 GLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNIPIQTGSYSNLTSGTASSAFNT 551 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVEL 362 D G+ LH P + G + L++ TE S V G P + R +TV Sbjct: 552 YDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVNGTTNATTNPAGPQFTKRSIQSTVLA 611 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +G IVL GL++D+ Q +PLL IP +G LFR+ + NR +T + + P ++ Sbjct: 612 DNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVIINDR 671 Query: 423 A-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 + ++ Y N + K +G Sbjct: 672 DTAQAVTSNRYDYIQGVQGSYRQDNNLMKDNDDPVVPPKPTGPSQG 717 >gi|260775597|ref|ZP_05884494.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450] gi|260608778|gb|EEX34943.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450] Length = 545 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 63/314 (20%), Positives = 117/314 (37%), Gaps = 37/314 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E ++ G +++ + +A ++ R + + + QV Sbjct: 214 QLEQAVSQLIGSGQGQSVVITPQAGVITVRAFPDEIREVRS------FIGVSQQRLHRQV 267 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------KSFAADFGGKFVSEGGDF 245 L+ I EV Q G S +S+G + + A G + Sbjct: 268 ILEAKILEVTLSDGYQQGIDWSKAFTSNGTNYTIGQGTPTTTGTPATLPGLDTIGTLLGG 327 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302 V+ SF+ V+ + + L+ P +TA + Q A G + T S+ Sbjct: 328 QTNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDFSTNVDT 387 Query: 303 --------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGD 347 +T G+ L TP + + G + L + V E G + Sbjct: 388 SSTTSTTSTDIELTPFFSGISLDVTPQIDNDGSVLLHVHPAVIDVTEENKEITNGTSTVS 447 Query: 348 MP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P + +R++D+ + G +V+ GL+K + +P L +P LG LFRN+ Sbjct: 448 LPLATSSIRESDSVIRAQDGDVVVIGGLMKSNTLDRTSKVPFLGDVPALGHLFRNTTQYT 507 Query: 406 EETEIFIAATPFLV 419 E+TE+ I P +V Sbjct: 508 EKTELVILLKPTVV 521 >gi|153215373|ref|ZP_01949971.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587] gi|124114744|gb|EAY33564.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587] Length = 559 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 96/263 (36%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235 QV L+ I EV Q G S SS+G S + + G Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSNGNPITSVLPG 332 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344 T SS + ++T G+ L TP + G + L + V E Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452 Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535 >gi|254558682|ref|YP_003065777.1| General secretion pathway protein D [Methylobacterium extorquens DM4] gi|254265960|emb|CAX21710.1| putative General secretion pathway protein D [Methylobacterium extorquens DM4] Length = 794 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 21/291 (7%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIG 214 + A+ + + S + K++ +L A QV L+ IAEV + Q G Sbjct: 463 RRDAIGVVADEANNSLVISATRNQYDKILRILGRLDAMPTQVLLETVIAEVTLNNELQFG 522 Query: 215 FQHSITGS-----------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 Q + S + ++ + + G +L+ F VL+AL Sbjct: 523 VQWFLKNSGSRFNLAQADTNRSVAQGTSGTDALIKAAVRGVPGFNYLLNASDFNVVLNAL 582 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVL 316 + T + ++ P +T + ++A G Q S + + D GV+L Sbjct: 583 QGVTRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVIL 642 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 TP V G + L I EVS+ V + + P+ R R+ T+V + G ++ + G+++ Sbjct: 643 SVTPRVNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQ 702 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + Q E +P+L +PI+G FRN R TE+ + P +++ D Sbjct: 703 EKAQITNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEAD 753 >gi|70730124|ref|YP_259863.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5] gi|68344423|gb|AAY92029.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5] Length = 794 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 100/270 (37%), Gaps = 28/270 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241 +V++ L+ QV ++ I EV D + G Q G V Sbjct: 460 EVIDQLDQR-RAQVVIESLIVEVSEDDASEFGVQWQAGNLGGHGGFGGVNLGGSGLVGTP 518 Query: 242 ------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + G+ + + AL+ L+ P L + + Sbjct: 519 ASKTSIDVLPKGLNVGVVNGTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNE 578 Query: 284 SASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +AS G + T +S+ +V + G+ L+ P + G + L I E Sbjct: 579 AASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQE 638 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 VS + R DT++ L G +VL GLL+D Q + +P LS IP LG Sbjct: 639 VSSVDQRASVDAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLG 698 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425 LFRN + + +T + + P++++ Sbjct: 699 VLFRNDKRSVTKTNLMVFLRPYIIRDSGAG 728 >gi|323527881|ref|YP_004230034.1| general secretion pathway protein D [Burkholderia sp. CCGE1001] gi|323384883|gb|ADX56974.1| general secretion pathway protein D [Burkholderia sp. CCGE1001] Length = 785 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 107/304 (35%), Gaps = 38/304 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T ++ + + V++ L+ QV ++ I E+ + +G Q + Sbjct: 374 IQADAATNSLIITASEPVYRNLRAVIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQV 432 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS-------------------------VKGVLDRF 254 +S + A ++ + + + Sbjct: 433 ANNSVFAGTNLATGSSNSIINLTAAAAAAGTTGGLATALGTQGIQQGLNIGWIHNIFGVQ 492 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------GATS 306 +L AL + L+ P L + + A G +T S S + Sbjct: 493 GLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSNLTSGNASSAFNT 552 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVEL 362 D G+ LH P + G + L++ TE S V G P + R +TV Sbjct: 553 YDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVNGTTNAATNPAGPQFTKRSIQSTVLA 612 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +G IVL GL++D+ Q +PLL IP +G LFR+ + NR +T + + P ++ Sbjct: 613 DNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVIISDR 672 Query: 423 AMRD 426 Sbjct: 673 DTAQ 676 >gi|332531032|ref|ZP_08406951.1| type II and III secretion system protein [Hylemonella gracilis ATCC 19624] gi|332039513|gb|EGI75920.1| type II and III secretion system protein [Hylemonella gracilis ATCC 19624] Length = 740 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 99/275 (36%), Gaps = 33/275 (12%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------------TGSSSGPSKSF 230 V++ L++ QV ++ IAEV D+ G Q G++ G Sbjct: 397 VIDQLDMR-RAQVFVESLIAEVNADVANDFGIQWQGGIPSGSSSSVVGLMGTNFGSGAGN 455 Query: 231 AADFGGKFVSE---------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + S V+ + + + LE L+ P L + Sbjct: 456 IFNLASGISSGQPAAPGAGFTAGVGVQRGNNGVALGVLARFLETNRMGNVLSTPNLMTLD 515 Query: 282 GQSASFTSGGQHLYKTVSSS---------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + A G + T + ++ D G+ L P + G + + I Sbjct: 516 NEEAKIVIGQNVPFVTGQYTANNSSSGAVNPFQTIERRDVGLTLAVRPQISENGTVKMVI 575 Query: 333 QTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS + R DT+V + G IVL GLL+D+ +E +P L I Sbjct: 576 SQEVSSVDPTSLTSAAGLRTSKRSIDTSVLVDDGAIIVLGGLLQDESSVSEEKVPGLGSI 635 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P LG LFR+ +R++T + + P +V+ + Sbjct: 636 PGLGWLFRSESGSRKKTNLMVFLRPVIVRNTQDSN 670 >gi|241664633|ref|YP_002982993.1| general secretion pathway protein D [Ralstonia pickettii 12D] gi|240866660|gb|ACS64321.1| general secretion pathway protein D [Ralstonia pickettii 12D] Length = 803 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 108/320 (33%), Gaps = 42/320 (13%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------------- 225 A QV ++ I EV Q+G Q + Sbjct: 428 ARRAQVYIESMIVEVTATKASQLGIQWMVGAGGPNTYGGGGTNFGTGSGNLLTLAGTIAT 487 Query: 226 ------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 S + V + +L AL ++ L+ P L Sbjct: 488 ITTGGIGSTAAQTALSSVNVGQLNGGQFGVFNKASGLGALLSALGSDGSVNVLSTPNLIT 547 Query: 280 ISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + A G T S + T + D G+ L P + G + ++ Sbjct: 548 LDNEEAKILIGQNVPITTGSYAQTGTSASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQ 607 Query: 332 IQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 I E S V G NA P+ VR +T V G +VL GLL+D+ Q ++ +P L Sbjct: 608 IFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGD 667 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-FFFNRVN 449 IPILGALFR+ R +T + + P +++ A + D+ Y+ D + F + Sbjct: 668 IPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGALSDNRYNYMRDTQQGFVSPNML 726 Query: 450 KIYGPKEASEVEGQNYKGAI 469 K+ + Sbjct: 727 PTTSDKDTPVLPTPEAMRPA 746 >gi|167620691|ref|ZP_02389322.1| type II/III secretion system protein [Burkholderia thailandensis Bt4] Length = 572 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 74/431 (17%), Positives = 141/431 (32%), Gaps = 39/431 (9%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80 P++ + A A + E + IS+ L + + V Sbjct: 146 PALPSDTEVASAGANANAETAAESDDNRAISLNLQQASLAAVFDAFAR-FTGLNIVVSER 204 Query: 81 VHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V ++ L A L+ G ++ +A L RR + Sbjct: 205 VRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERRRF---DAHAR 261 Query: 140 MVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------- 191 + + V + L +Q ++ + + NLL + Sbjct: 262 AAQLEPLASRSFVLRYARAADVQRLLSGSAAQRILSKRGSVLADPRTNLLFVTDLSGRLA 321 Query: 192 -----------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSK 228 QV ++ I E R + +G + + +G Sbjct: 322 QIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLA 381 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 A F + ++ + L ALE + ++ P + A Sbjct: 382 DLTARPISGFDAATAGLTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVE 441 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 442 QGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASG 498 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + + Sbjct: 499 PAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRS 558 Query: 409 EIFIAATPFLV 419 E+ + TP +V Sbjct: 559 ELVVYITPTVV 569 >gi|327482460|gb|AEA85770.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166] Length = 740 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 59/276 (21%), Positives = 111/276 (40%), Gaps = 12/276 (4%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + V +AEV + + +G +S G + G ++ + Sbjct: 468 VMIDVLLAEVNINDREGLGIDWRNITASLGGKELLIGTANGL---GASGLNISALNSAGQ 524 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVT 308 + L+A + P L SGQ A G + T ++ + T +V Sbjct: 525 TKAALNAFYENRQAVIRSSPKLMVRSGQEARIEVGNEIPVVTGTTQSTETGNAPITQTVQ 584 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGT 367 GV+L PTV + G + L++ E+SE ++ P RK +TT+ L GG+ Sbjct: 585 YRKTGVLLSIKPTVQASGVVDLQVSQELSESTDTSTGENLTPVINNRKVETTLTLRDGGS 644 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRD 426 ++LAGL+ + + G+PLL +P +G LF++ + TE+ + P++++ + Sbjct: 645 VMLAGLISSNKGRGDTGVPLLGDLPWVGNLFKSQSASENRTELIVMIIPYIIRDFDEAQS 704 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 L+R + A + V ++ Sbjct: 705 LTRSYQDRLPLNSAPSLERRGVYRLPAADTTPPTAP 740 >gi|309780546|ref|ZP_07675293.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA] gi|308920701|gb|EFP66351.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA] Length = 805 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 108/320 (33%), Gaps = 42/320 (13%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------------- 225 A QV ++ I EV Q+G Q + Sbjct: 430 ARRAQVYIESMIVEVTATKASQLGIQWMVGAGGPNTYGGGGTNFGTGSGNLLTLAGTIAT 489 Query: 226 ------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 S + V + +L AL ++ L+ P L Sbjct: 490 ITTGGIGSTAAQTALSSVNVGQLNGGQFGVFNKASGLGALLSALGSDGSVNVLSTPNLIT 549 Query: 280 ISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + A G T S + T + D G+ L P + G + ++ Sbjct: 550 LDNEEAKILIGQNVPITTGSYAQTGTSASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQ 609 Query: 332 IQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 I E S V G NA P+ VR +T V G +VL GLL+D+ Q ++ +P L Sbjct: 610 IFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGD 669 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-FFFNRVN 449 IPILGALFR+ R +T + + P +++ A + D+ Y+ D + F + Sbjct: 670 IPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGALSDNRYNYMRDTQQGFVSPNML 728 Query: 450 KIYGPKEASEVEGQNYKGAI 469 K+ + Sbjct: 729 PTTSDKDTPVLPTPEAMRPA 748 >gi|126666716|ref|ZP_01737693.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17] gi|126628761|gb|EAZ99381.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17] Length = 705 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 62/332 (18%), Positives = 123/332 (37%), Gaps = 40/332 (12%) Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 T ++ + +R++++ V + + + + S F+S R S + V Sbjct: 373 ETTKQIAELAPLRLDIIQVNYAKAAEVVALVQADQELISSRGFISSDSRTN-TISVRETV 431 Query: 185 MNLLNIA--------GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG- 235 L I QV+++ I + ++ + +G + + + S Sbjct: 432 EKLNEIRRLVSTWDVAVRQVSIEARIVRAQTNVAESLGVRWGGASYGNNGNNSTVVGGSL 491 Query: 236 ---------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 G F+V F + L ALE Sbjct: 492 ETVGGVMGAGAANSTSVTFPGALAVDLGVSGDGASSFAVGFSGGDFLVDLELSALESDGK 551 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 +++P + Q+AS SG + ++ SSS ++ + + + L TP + +I Sbjct: 552 AEIVSQPRVVTADRQTASIKSGQEIPFQEASSSGATST-SFKEAVLSLEVTPQITPDDKI 610 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + + EV++ G + + P+ T V + +G TIVL G+ + + P L Sbjct: 611 IMDL--EVTQDSRGEDTPNGPAINTNSVTTQVLVANGETIVLGGIFESTNTETTTKTPFL 668 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP LG LF+ ++ +E+ I TP ++K Sbjct: 669 GDIPYLGRLFKRTQTTELRSELLIFITPKIIK 700 >gi|127514547|ref|YP_001095744.1| general secretion pathway protein D [Shewanella loihica PV-4] gi|126639842|gb|ABO25485.1| general secretion pathway protein D [Shewanella loihica PV-4] Length = 707 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 47/283 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 396 Query: 236 --------------------------------GKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + G + + F ++ A+ Sbjct: 397 WAAQDEKASNSCTGSGDNLTCTDNPDKKGDITLLAQALGKVNGMAWGVAMGDFGALIQAV 456 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLH 317 T LA P++T + Q ASF G + + +S +V + GV L Sbjct: 457 SSDTKSNVLATPSITTLDNQEASFIVGDEVPVLTGSQNSSNGNSNPFQTVERKEVGVKLK 516 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + L I+ EVS ++ R+ TTV SG +VL GL+ ++ Sbjct: 517 VVPQINEGTTVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINEE 574 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +Q+ + +P L IPILG LF++S +++ + + P +++ Sbjct: 575 VQESVQKVPFLGDIPILGHLFKSSSSGKKKKNLMVFIKPTIIR 617 >gi|294101775|ref|YP_003553633.1| type II and III secretion system protein [Aminobacterium colombiense DSM 12261] gi|293616755|gb|ADE56909.1| type II and III secretion system protein [Aminobacterium colombiense DSM 12261] Length = 556 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 98/284 (34%), Gaps = 11/284 (3%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAE 204 + + ++ + ++ E + KV + + QV ++ I E Sbjct: 269 IASTAKMVKQATGVQKIVEDERLNTLYVTADREQLLKVERYVELIDRPGKQVMIEARIVE 328 Query: 205 VRRDILKQI-----GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-FET 258 + ++ G + + + + + Sbjct: 329 IADRASHEVASCLESIYKHWMLEYKGRGTPGRIGYSDSYSEGMFGEDITSLSGTVKKLDA 388 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 ++ LE+ LAEP++ I G A ++ Y + G + + + G L Sbjct: 389 LISTLEKEEKGHILAEPSVITIEGTKARIQLVQKYPYVSTRDEAGNPTYVSEEVGPQLEI 448 Query: 319 TPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 TP V I +++ EV G P R+ +T V + G V+ GL K Sbjct: 449 TPFVGRDEIITIKLVIKTGEVVSWREGARGETYPETSTRQVETQVRVRDGEPFVIGGLFK 508 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + + PLL IPILG+LF +E+ E+ I P ++ Sbjct: 509 ELKRGNQYKFPLLGDIPILGSLFSTQYTEKEKNEVIIIVIPHIL 552 >gi|328952531|ref|YP_004369865.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM 11109] gi|328452855|gb|AEB08684.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM 11109] Length = 794 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 108/268 (40%), Gaps = 34/268 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV +V IAEVR + G + + S + ++S + + G S V G + Sbjct: 491 PRQVLNEVLIAEVRLTDDLKYGLEFLLGQSPTTATESTSDNSGALVASSTSTTIVPGTIQ 550 Query: 253 RFSFE-------------------------TVLHALERATAIRTLAEPTLTAISGQSASF 287 +++ L + LA P + A + Q A Sbjct: 551 GVDINSPASAQFAAASGLTFVALDTANKLKGLINLLSSEGKVNILASPHIMAANNQEARI 610 Query: 288 TSGGQHLYKTVSS--------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 G + + S S +V + G++L P + + G + L I EVS Sbjct: 611 MIGEEVPILSSQSIPLVSQTTSFQTNTVQYRNTGIILTVKPQINAKGLVTLEIAQEVSNA 670 Query: 340 VIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P++ VR A T + T+VL GL+++D+ + + GIP L +IP+LG LF Sbjct: 671 TATTTGVTSSPTFTVRHAKTQLITGDNQTVVLGGLIREDLTETQAGIPGLRRIPLLGPLF 730 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRD 426 ++ +R++TE+ + TP +V + Sbjct: 731 GSTGVSRQKTELVVLITPHIVTNLQEGA 758 >gi|284047888|ref|YP_003398227.1| type II and III secretion system protein [Acidaminococcus fermentans DSM 20731] gi|283952109|gb|ADB46912.1| type II and III secretion system protein [Acidaminococcus fermentans DSM 20731] Length = 405 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 85/412 (20%), Positives = 148/412 (35%), Gaps = 41/412 (9%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82 +A P A + + + ++ L+ I + +++Q + Sbjct: 20 LAAEPLSLSVQEAPVRDVLQSMAQMAGRNLVLDSQIPGTLSLEIQ------------QLP 67 Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142 P+ + + ++ G + +G + + + L L I + Sbjct: 68 FPQALEMVTRSQG----LCFREEGNTLW---VASPERMDALYGRL-TVHPLEYISARETA 119 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 +T+ L + R + A + Q+TL+ I Sbjct: 120 ETLKPLFSTPLAWSRDTNAILFHGSPGEENRLKEALKALD--------RPTRQITLEARI 171 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 + +++G Q + G K G G SF+ L A Sbjct: 172 LSLGESASRELGLQWDWSALPEGRKKGEGG---------FGGRLHLGHSYGASFQARLSA 222 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTP 320 L + + LA P + + G+ AS G V++ST ++ D G+ L +TP Sbjct: 223 LCQEGKAKVLATPRIITLPGREASIFIGDHIPVVTEKVTNSTTTSTTEYVDAGIRLSYTP 282 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + G I ++ TEVS P + + R ADT V L T+V+ GL+ + Q Sbjct: 283 YLSQDGLITAKVHTEVSTPTL-IAELKNYRITSRTADTHVRLREKETLVIGGLISEQEQH 341 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPD 431 E IPLLSK+P+LG LF+ +R TE+ + TP+L P PD Sbjct: 342 RMEAIPLLSKLPLLGELFKFRSRSRNRTEVCMFLTPYLSGPGQPLPAAVLPD 393 >gi|205356095|ref|ZP_03222862.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205345938|gb|EDZ32574.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 470 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 65/272 (23%), Positives = 107/272 (39%), Gaps = 17/272 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S K + L + QV + V+I V + G + Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQVNNE 250 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F +F + G+ +F+++++ L + L+ P L A++ Q A + G Sbjct: 251 NSFI-QFQNGQSFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309 Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Y+ SS G + TT G++L+ P + G+I LRI +S+ Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369 Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + P +K + V++ + T++L GL+ D K I LSKIPILG Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +LF+ N + TEI TP +V V L Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461 >gi|327479223|gb|AEA82533.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri DSM 4166] Length = 706 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 51/334 (15%), Positives = 117/334 (35%), Gaps = 37/334 (11%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 ++A L + + + + +V +G V + S + + ++ + + Sbjct: 368 ELAPLRREVVQVNYAKAADIARLFQSVTSNGAVAEDRGSIAVDDRTNNIIAYQTQERLDE 427 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-- 236 +++ L+I QV ++ I E K +G + + ++ G Sbjct: 428 LR--RIVAQLDIPVR-QVMIEARIVEANVGYDKALGVRWGGSYTNDNWGLYGKDGAIGRD 484 Query: 237 -------------------------------KFVSEGGDFSVKGVLDRFSFETVLHALER 265 ++ + V D + L A+E+ Sbjct: 485 EDGGRYLLPGTDKVGNFTLEDALAPVPFVDLGVLNSTAGIGIGYVSDHGILDLQLSAMEK 544 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 +++P + ++A G + Y+ SSS ++ + + + L TP + Sbjct: 545 TGNGEIVSQPKVVTADKETAKILKGAEIPYQEASSSGATST-SFKEAALSLEVTPQITPD 603 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 RI + ++ P +P + + V + G TIV+ G+ + E + Sbjct: 604 NRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLVTDGETIVIGGVFSNSQISSIEKV 663 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P L +P +G LFR +++E+ + TP ++ Sbjct: 664 PFLGDVPFVGRLFRRDIVEDKKSELLVFLTPRIL 697 >gi|307578579|gb|ADN62548.1| type IV pilus secretin PilQ [Xylella fastidiosa subsp. fastidiosa GB514] Length = 581 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 105/264 (39%), Gaps = 28/264 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------------GSSSGPSKSFAA 232 DQV ++ I + +G + + GSS+ ++ Sbjct: 315 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTAGSSTSATRGLNV 374 Query: 233 DFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D GG + + + +F+ + L AL++ + ++ P + + + Sbjct: 375 DLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIKQ 434 Query: 290 GGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIG 342 G + Y T V+ +V + + L TPT+ + R+ L + E+ + + Sbjct: 435 GKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITI 494 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+ Sbjct: 495 ANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRG 554 Query: 403 FNREETEIFIAATPFLVKPVAMRD 426 ++++ E+ I TP +++ Sbjct: 555 KDKQKAELLIFVTPKVLRVANATA 578 >gi|154174515|ref|YP_001408333.1| type II and III secretion system protein [Campylobacter curvus 525.92] gi|153793105|gb|EAU00522.2| type II and III secretion system protein [Campylobacter curvus 525.92] Length = 506 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 109/277 (39%), Gaps = 28/277 (10%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----ITGSSSGPS 227 + +N + + QV + V+I V + + G S S G Sbjct: 208 TGTPSQLRRVESYINEVQRRLKKQVIIDVSIIAVDLNNEYKQGVDWSKFELGFNSYLGGD 267 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLD-----RFSFETVLHALERATAIRTLAEPTLTAISG 282 + ++ G G L+ FS + +++ LE + ++ P +T ++ Sbjct: 268 PTKPSNAGWNNRGNGLSAGFGQTLNIAANLNFSLDGMMNFLETNGKAKVISSPKVTTLNN 327 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVT----------THDYGVVLHFTPTVLSPGRIGLRI 332 Q A + G Y+ + + A ++ + G++L+ P V +I LRI Sbjct: 328 QQALISVGDNINYRVMEQTDSANALNDRVKTTYKQYSVFIGILLNLLPEVSDNNKIMLRI 387 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKA---------DTTVELPSGGTIVLAGLLKDDIQQLKE 383 +S + + +R+ T V++ SG TIVL GL+ + Sbjct: 388 NPSLSSFKYQEDDVRAQNTNIREIAPDTIQKKLSTVVQVNSGDTIVLGGLIGQTKNKQNT 447 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P+L+ IP+LG F++++ + TE+ TP +V Sbjct: 448 AVPILADIPLLGNAFKSTKDAVKTTELIFVITPRVVD 484 >gi|238896859|ref|YP_002921604.1| outer membrane porin HofQ [Klebsiella pneumoniae NTUH-K2044] gi|238549186|dbj|BAH65537.1| outer membrane porin [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 414 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 5/230 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGVL 251 QV L I + L+++G + + + S P + G + Sbjct: 182 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNIGKI 241 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + E L ALER + +A P L A Q AS G + Y+ S +GATSV + Sbjct: 242 NGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 301 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 302 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETLA 361 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 362 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 411 >gi|221069059|ref|ZP_03545164.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1] gi|220714082|gb|EED69450.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1] Length = 703 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 26/247 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------------GPSKSF 230 QV ++ I E R + +G + S G + Sbjct: 450 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSGSGSSSKFPSGNFVNL 509 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A G FSV L ALE + ++ P L A G Sbjct: 510 PASVAGVNTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 569 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 ++ Y + GAT+++ + L TP + G I L + +V++ G + Sbjct: 570 TEYPYSVTAP-NGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 626 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PL +P+LG LFR++ + E+ Sbjct: 627 IDTKHIKTQVLVENGGTVVIGGIFEMEETNQLNKVPLFGDLPVLGHLFRSNTKASTKREM 686 Query: 411 FIAATPF 417 + TP Sbjct: 687 LVFITPK 693 >gi|332977545|gb|EGK14316.1| type IV pilus biogenesis protein PilQ [Psychrobacter sp. 1501(2011)] Length = 608 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 51/312 (16%), Positives = 105/312 (33%), Gaps = 43/312 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G + + T + ++ + +++ ++I QV ++ I Sbjct: 297 KGSSTLLSSRGVIAVDTRTNTLIVKDTADSINNIRMLISQIDIP-VQQVMIEARIVSATD 355 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFG-------------------------------- 235 + K++G + I + + + Sbjct: 356 NFSKELGVKWGILSNGVANNDTLLVGGSDQTLADLKQFSRRNTTFKGKPVSYPDYAVSRP 415 Query: 236 -------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G G + + L A++ ++ P + + Q+A + Sbjct: 416 DNLNIDLGIANPAGSIAFGILSMSDLMIDLELSAMQAEGRGEVISTPKILTLDKQTAKVS 475 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 SG + Y++ S G T + + L TP + G I L++ E P + + Sbjct: 476 SGTKIPYQSESEGGGTT-TQFEEALLSLEVTPNITPEGEISLQLNIENGRPNPVSSG--V 532 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + T V + G TIVL G+ ++ I E +P +P+LG LF+ ++ Sbjct: 533 ILIDTDRLSTHVTVADGQTIVLGGIYRNQIFNNVEKVPFFGDLPLLGRLFKKDLRRNDKQ 592 Query: 409 EIFIAATPFLVK 420 E+ I TP L++ Sbjct: 593 ELLIFVTPTLIQ 604 >gi|317494398|ref|ZP_07952812.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917648|gb|EFV38993.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium 9_2_54FAA] Length = 437 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 76/422 (18%), Positives = 153/422 (36%), Gaps = 33/422 (7%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV-----PVDVQDVLVSDPTKADVV 80 P + A + + + +++ +++ + V + + + ++ Sbjct: 30 TPITLAFSDAPLVNVLQALADNQHLNLIVSEDVKGNTSLKLVDVPWKRAMQAIARLHELS 89 Query: 81 V-HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 + + +++ Q ++ + + L + L++ D+ ++ Sbjct: 90 IEQTGNILFV------QTMAVVDKRQERVHNKQLQENAQRPISLTIALQQADVDAVVKNL 143 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 +L D + L + Q + ++ QV L Sbjct: 144 TQQKGGLLSAQGTVSADPRTNTILVRDLPENTRAVQAWIDELDQPVS--------QVQLT 195 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAADFGGKFVSEGGDFSVKG 249 I + R+ L ++G + GS S F + S F + Sbjct: 196 AHIVTINRESLNELGVRWGTAGSDETTSSDSDSSNFRLNQFNMGLPAEGRSFNAGFQIAR 255 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + R + + + +A P L A + Q+AS G + Y+ S ++G+TS+ Sbjct: 256 IGGRLLELELSALEQED-NVEIIASPHLMATNLQTASIKQGTEIPYEVSSGASGSTSIEF 314 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367 + + + TP V+ G+I L +Q + P I G+ + ++ T V L G T Sbjct: 315 KEAVLGMEVTPRVMRNGKITLTLQITQNMPGRSIKQGDGEALAIDKQEIKTQVTLSDGDT 374 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 ++L G+ + K +P L IP+LGALFR+S + E+ I TP LVK L Sbjct: 375 VILGGIFQRQTTHGKTQVPKLGDIPLLGALFRDSTDASKRRELVIFITPKLVKTETPSSL 434 Query: 428 SR 429 R Sbjct: 435 LR 436 >gi|283851919|ref|ZP_06369195.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] gi|283572643|gb|EFC20627.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] Length = 542 Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 58/299 (19%), Positives = 110/299 (36%), Gaps = 23/299 (7%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + S + + L + A S ++ ++ QV++ + EV D Sbjct: 225 KDGSASLQILPLKGSNTVVVTALPAAQSQVANILANMDKRTP-QVSISAMLVEVILDESS 283 Query: 212 QIGFQHSITGSSSG-----------------PSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 ++G + SS S+S +A+ + + Sbjct: 284 KMGLDWKLRAWSSNKAYNEFAQDTLAKTLETGSQSASANLAKYSDAGTKAAMFFNIFPGG 343 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----VTTH 310 ++H + T + L+ P L Q AS + G + + + Sbjct: 344 YLSMLVHMISSDTNAKILSSPHLLVADNQEASISLGREIPILKEYRTDTNNDPIKTYSQR 403 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 +G+ L TPT+ G + L++ ++S D R ADTTV + T+V+ Sbjct: 404 TFGLELKMTPTIADNGDVTLKVSQKLSNLDEQDTTNDTYKASERTADTTVVVHDKQTLVI 463 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 GL ++ G P KIP+LG LF ++++ E+ + TP +V+ P+ +S Sbjct: 464 GGLTMQTDEKEDSGTPTARKIPVLGYLFGTKSTSKQKRELLLFITPTVVRDPIQADAMS 522 >gi|152972270|ref|YP_001337416.1| outer membrane porin HofQ [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957119|gb|ABR79149.1| putative transport portein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 413 Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 5/230 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGVL 251 QV L I + L+++G + + + S P + G + Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNIGKI 240 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + E L ALER + +A P L A Q AS G + Y+ S +GATSV + Sbjct: 241 NGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 300 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 301 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETLA 360 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 361 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410 >gi|209515818|ref|ZP_03264681.1| general secretion pathway protein D [Burkholderia sp. H160] gi|209503845|gb|EEA03838.1| general secretion pathway protein D [Burkholderia sp. H160] Length = 792 Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 65/324 (20%), Positives = 111/324 (34%), Gaps = 39/324 (12%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 V++ L+ QV ++ I E+ + +G Q + + + A G ++ Sbjct: 401 VIDQLDAR-RAQVYIEALIVELNSNTAGNLGIQWQVANGNLFAGTNLATGTGNSIINLTA 459 Query: 244 DFSVKGVLDRF-------------------------SFETVLHALERATAIRTLAEPTLT 278 + +L AL + L+ P L Sbjct: 460 AAAADASTGGLATALGASGLQQGLNVGWIHNLFGVQGLGALLQALSQTADANVLSTPNLI 519 Query: 279 AISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + A G +T S S + D G+ LH P + G + L Sbjct: 520 TLDNEEAKIIVGTNVPIQTGSYSNLTSSATSTAFNTFDRVDIGLTLHVKPQITDGGILKL 579 Query: 331 RIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 ++ TE S V G N P + R +TV +G IVL GL++D+ Q +P Sbjct: 580 QLYTEDSAIVNGTNNSTTNPAGPEFTKRSIQSTVLCDNGEIIVLGGLMQDNYQVSNSKVP 639 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFF 445 LL IP +G LFR+ + R +T + + P ++ + +S Y Sbjct: 640 LLGDIPWVGQLFRSEQKTRNKTNLMVFLRPVILSDRETTQAVSANRYDYIQGVQGAYRSD 699 Query: 446 NRVNKIYGPKEASEVEGQNYKGAI 469 NRV K + +G + Sbjct: 700 NRVMKDRDDPVVPPMPIGPSQGGV 723 >gi|308271769|emb|CBX28377.1| hypothetical protein N47_G37010 [uncultured Desulfobacterium sp.] Length = 526 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 104/269 (38%), Gaps = 40/269 (14%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------------------------- 222 Q+ +K I E +D + +G Q + Sbjct: 244 RPTPQILIKANIVETTQDTARNLGIQWGGMYNPRLGNHDLWVSPGGSTNSTTPTNPISGN 303 Query: 223 ---SSGPSKSFAADFGGKFVSE------GGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 S G + + FG F + G + G + E L AL+ + L+ Sbjct: 304 YTPSYGSTSLSSQGFGINFPASMSDAASGTLGLMFGTIGGNILEMQLSALQNNGKLNILS 363 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGL 330 P++T + Q+A +G + Y T + T + SV D + L P V+ + + Sbjct: 364 SPSITTLDNQTAYTENGERIPYVTEETGTTGSITKSVKFEDVVLRLEIKPHVIDSKNLKM 423 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + + +E N P ++ TT+ + +G TIV++GL K Q + +P+L Sbjct: 424 EVLVKKNEVDNSRNVLGNPYIIKKETKTTLIVKNGETIVISGLTKQKKQDSENSVPVLRD 483 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 +P+ G +F+ + ++ E+ I TP ++ Sbjct: 484 MPLFGRMFKGTGKSKSMEEVLIFITPTIL 512 >gi|192359937|ref|YP_001980940.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107] gi|190686102|gb|ACE83780.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107] Length = 714 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 60/303 (19%), Positives = 116/303 (38%), Gaps = 36/303 (11%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + + E + + + ++ +++ ++I QV ++ I Sbjct: 411 TGSVLSERGQGIVDERTNSIIITDTADRIEAFR--RLVEQIDIPIR-QVMIESRIVIANT 467 Query: 208 DILKQIGFQHSITGSSSGPS--------------------KSFAADFGG----------- 236 D +Q+G + G S ++ + G Sbjct: 468 DFERQLGIRWGGAGYHLNNSRLINVAGSQSGLDDEDGTSPANWFTNGGTLNLTENNMVNL 527 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G +V + D + L ALE + +++P + Q A SG + Y+ Sbjct: 528 PVNNPAGSIAVGVLTDSVFLDMELSALETSGYAEIVSQPKVITSDKQKAVIKSGKEIAYQ 587 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 S S G T + ++L P + RI + + + V + +PS V + Sbjct: 588 ETSPSGGTT-TGFKEAVLMLEVVPQITPDNRIIMDLFVTK-DSVGEITQQGVPSLDVTRL 645 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V + +G T+VL G+ + + + +P+L IP LG LF+ + N+ +TE+ I TP Sbjct: 646 QTKVLVNNGQTVVLGGVFSLESTKGESKVPVLGDIPYLGRLFKRTVDNQFKTELLIFVTP 705 Query: 417 FLV 419 L+ Sbjct: 706 KLI 708 >gi|307545809|ref|YP_003898288.1| general secretion pathway protein D [Halomonas elongata DSM 2581] gi|307217833|emb|CBV43103.1| general secretion pathway protein D [Halomonas elongata DSM 2581] Length = 700 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 63/265 (23%), Positives = 103/265 (38%), Gaps = 31/265 (11%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------- 244 QV ++ IAE+ K++G Q S + + G + Sbjct: 367 RRAQVAVEAIIAEITESRAKELGVQWLFGDISGEGTVPAGGVNFPSASTPGINQIAAAAA 426 Query: 245 -------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + SF +L+AL T L+ P+LT + A Sbjct: 427 SQDASALGSLLGNLNGVTAGVGRLSSGGVSFAMLLNALRSDTQTNLLSTPSLTTLDNAEA 486 Query: 286 SFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 S G + + TV ++ ++ D GV L+ PT+ + I L I EVS Sbjct: 487 SILVGQEVPFVTGSTTVDNTNPFQTIQREDVGVKLNIRPTIGADNSIRLEIVQEVSSIDE 546 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 GV A D+ R+ +TTV GG IVL GL+ D+ ++ +PLL IP +G LFR Sbjct: 547 GVKASDV-VTNKREIETTVLTQDGGIIVLGGLISDENANAEQKVPLLGDIPGVGRLFRYD 605 Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426 R +++ + + +++ Sbjct: 606 RDTQDKRNLMVFIRARVLRDAPQTQ 630 >gi|254229258|ref|ZP_04922676.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp. Ex25] gi|151938182|gb|EDN57022.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp. Ex25] Length = 547 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 30/304 (9%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202 +L V + S + + T + + ++V L + + QV L+ I Sbjct: 220 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 279 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256 EV + Q G S +S G S S + + + +F Sbjct: 280 LEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPPLDAIGTLLGGQTNVTISDGNF 339 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306 VL + + L+ P +TA + Q + G + T SS Sbjct: 340 NAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVE 399 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGD--------MPSYRVRK 355 +T G+ L TP + + G + L + EVSE V +N G + +R+ Sbjct: 400 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEVKKLNLGGEFQNIQLPLAKSSIRE 459 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +D+ + G +V+ GL+K ++L +P L +P LG LFRN E+TE+ I Sbjct: 460 SDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVTEKTELVILLK 519 Query: 416 PFLV 419 P +V Sbjct: 520 PTVV 523 >gi|269968038|ref|ZP_06182076.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B] gi|269827395|gb|EEZ81691.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B] Length = 546 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 64/304 (21%), Positives = 111/304 (36%), Gaps = 30/304 (9%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202 +L V + S + + T + + ++V L + + QV L+ I Sbjct: 219 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 278 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256 EV + Q G S +S G S S + + + +F Sbjct: 279 LEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPPLDAIGTLLGGQTNVTISDGNF 338 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306 VL + + L+ P +TA + Q + G + T SS Sbjct: 339 NAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVE 398 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355 +T G+ L TP + + G + L + V E V ++ +R+ Sbjct: 399 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSIRE 458 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +D+ + G +V+ GL+K ++L +P L +P LG LFRN E+TE+ I Sbjct: 459 SDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVTEKTELVILLK 518 Query: 416 PFLV 419 P +V Sbjct: 519 PTVV 522 >gi|114328429|ref|YP_745586.1| general secretion pathway protein D [Granulibacter bethesdensis CGDNIH1] gi|114316603|gb|ABI62663.1| general secretion pathway protein D [Granulibacter bethesdensis CGDNIH1] Length = 779 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 68/329 (20%), Positives = 122/329 (37%), Gaps = 19/329 (5%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEV 205 G + + + + + S + +L QV + IAEV Sbjct: 441 AGNMDDAGTDPNTLRIVPNTQNNAVLIFATESEYGPIETMLRKIDILPLQVRIDAIIAEV 500 Query: 206 RRDILKQIGFQHSITGSSSGPS-------KSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 + + G Q + + A+ G + G + + S + Sbjct: 501 ALNDTLRYGTQFFFREGGLNSAMQTAAATAATASTGGLLAAAIPGFSNGFLLTGSSSSQL 560 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDY 312 + L+ T ++ L+ P L + + A G Y T S +V+ Sbjct: 561 AMTLLQSVTKVQVLSSPELMVLDNEPARLQVGALVPYLTAQSQATIGQSAIINAVSYQQT 620 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVL 370 GV+L+ TP V + G + L I EVS+ +N + P+++ R + V + G T+ L Sbjct: 621 GVILNVTPRVNNSGLVTLDISQEVSDVDTSINTNGISSPAFQQRSVQSRVVVQDGQTVGL 680 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGL++D+ + G+P L +P+LG++F NR TE+ I TP ++ RD Sbjct: 681 AGLIRDNNSRANGGVPFLKDVPVLGSVFGQQNNNRSRTELLILVTPHVIH--DQRDARAL 738 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + A +N + A Sbjct: 739 TEDLRQNLRDAALVPQELNHLRPTGSADP 767 >gi|313682348|ref|YP_004060086.1| type ii and iii secretion system protein [Sulfuricurvum kujiense DSM 16994] gi|313155208|gb|ADR33886.1| type II and III secretion system protein [Sulfuricurvum kujiense DSM 16994] Length = 535 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 99/242 (40%), Gaps = 16/242 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-------- 244 QV ++ I E+ K++G ++ ++G + G + F + + Sbjct: 256 RQQVYVRAKIIEISEGKSKEVGIKYGLSGGTVGSNGVFTFNTMLGDGTAAAVALDPSVTT 315 Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 F + + + + L A L+EP++ I +S G + + Sbjct: 316 ALKFDIPTITSGIALGANIALLNTNGAAEILSEPSILCIDNLESSIYVGKTESISSGVTQ 375 Query: 302 TGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 T +T D G+ L P + + ++ L + ++ + N +PS R+ Sbjct: 376 GVGTGITQNFTRQDIGLTLKIKPRLSNDNKVLLGVNAKLEDIDSNTN-LQLPSTTKREVI 434 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T+ + +G T+++ GL+++ +P L IP+LG LFR+ ++ + I TP+ Sbjct: 435 TSAIVNNGETVIIGGLIREKTDHNDNRVPFLGDIPVLGHLFRDESSKTDKINLVILLTPY 494 Query: 418 LV 419 ++ Sbjct: 495 II 496 >gi|271500445|ref|YP_003333470.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya dadantii Ech586] gi|270344000|gb|ACZ76765.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya dadantii Ech586] Length = 690 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 67/447 (14%), Positives = 139/447 (31%), Gaps = 33/447 (7%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99 G + IS+ N + D + V++ A V + + + + G + Sbjct: 158 TGPAEYISLIRNFSQQRETKDDRRKVMIFPLRYASVSDRTIQYRDQRLVIPGVATMLNEL 217 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--------HGMV 151 + + + + D++ + + +L G Sbjct: 218 MDGNRSAPAGASGAVSGMGSEGGMAQANGAGGQDAS-QAIERNARAMLARLASRASSGEA 276 Query: 152 RTIQDSQRAV-ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVRRD 208 + + + ++S + + + ++ L++ Q V + I +V R Sbjct: 277 ASSRKKDQLNGKVSADVRNNALLIRDDEKRREEYQQLIDKIDVPQNLVNIDAIILDVDRT 336 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++ + + + FVS D F + ALE Sbjct: 337 ALSRLEANWQGKLGAVTGGANLMSGSSTLFVS-----------DFKRFFADIQALEGEGT 385 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 +A P++ + Q A +V G L TP V+ G Sbjct: 386 ASIVANPSVLTLENQPAVIDFSRTAFITAT--GERVANVQPVTAGTSLQVTPRVVGRGST 443 Query: 329 G-LRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 +++ ++ + + N S R T + +VL G ++ + +P Sbjct: 444 SSIQLVIDIEDGQVETNTEGNASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDKRVP 503 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 LL IP +G LF + + E TP L+ D+ +DA Sbjct: 504 LLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSVDNRRQLNDAMGRVAQ 563 Query: 447 RVNK--IYGPKEASEVEGQNYKGAIGF 471 R +K ++G E + + + + GF Sbjct: 564 RNSKTDLFGMVENAMRDLASGQTPAGF 590 >gi|152990751|ref|YP_001356473.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2] gi|151422612|dbj|BAF70116.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2] Length = 507 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 127/328 (38%), Gaps = 39/328 (11%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIA 203 +HG++ +D +A + + ++V + + ++V + V+I Sbjct: 173 IHGILNRPEDEYQAPDPIVNINAGLITVTATKKQIERVEKYIATIQNRLHNEVMIDVSIL 232 Query: 204 EVRRDILKQIGFQHSIT----GSSSGPSKSFAADFGG--------KFVSEGGDFSVKGVL 251 V + G S G +F + +F+V+ + Sbjct: 233 AVILNDQYTNGIDWSRFSLLVNGDYGADNTFTPGTNTKLLSYTREGSGTSTSNFNVQRTI 292 Query: 252 DRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---------KT 297 + + +++ LE+ + TL+ P L ++ Q A + G Y + Sbjct: 293 GSYFDASVNLAGIINFLEKNGQVITLSNPKLMTLNNQPAIISIGDTINYNVPTSIVISQN 352 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDM--- 348 T + + ++ G++L+ TP + G I LRI +SEP N + Sbjct: 353 GGLGTQSFTPSSVFIGILLNITPEITENGEIILRINPSISEPRDPKQLDQTTNENGIRQI 412 Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P +K + V++ G T++L GL+ + G+P+L IP+LG LFR+ N + Sbjct: 413 APDISEKKISSVVKVKDGSTLILGGLISNIKNFTINGVPVLRDIPVLGGLFRSKARNNKR 472 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYS 435 E+ P ++K + + S D YS Sbjct: 473 FELVFIIKPRIIKESSTDNYSLKDLGYS 500 >gi|57238497|ref|YP_179628.1| general secretory pathway protein D [Campylobacter jejuni RM1221] gi|57167301|gb|AAW36080.1| general secretory pathway protein D [Campylobacter jejuni RM1221] Length = 470 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S K + L + QV + V+I V + G + Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQVNNE 250 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F +F + G G+ +F+++++ L + L+ P L A++ Q A + G Sbjct: 251 NSFI-QFQNGQGFVKNLGLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309 Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Y+ SS G + TT G++L+ P + G+I LRI +S+ Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369 Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + P +K + V++ + T++L GL+ D K I LSKIPILG Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +LF+ N + TEI TP +V V L Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461 >gi|16124428|ref|NP_418992.1| general secretion pathway protein D [Caulobacter crescentus CB15] gi|221233111|ref|YP_002515547.1| type II secretion pathway protein D [Caulobacter crescentus NA1000] gi|13421292|gb|AAK22160.1| general secretion pathway protein D [Caulobacter crescentus CB15] gi|220962283|gb|ACL93639.1| type II secretion pathway protein D [Caulobacter crescentus NA1000] Length = 687 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 58/324 (17%), Positives = 113/324 (34%), Gaps = 41/324 (12%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + + +V+ L++ +QV ++ + EV Sbjct: 319 VAATPSANGPQATIARFPGANALIINAPPETQRTLAEVIRQLDVR-REQVLVEAIVVEVT 377 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA---------------------------------AD 233 KQ+G Q + G++ A Sbjct: 378 DGTAKQLGVQFLLGGTNGTIPFVATNYTNATPSLLPLVGAAATTTSGADTEALKSLRDAA 437 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + G V G F +++A+++ T L+ P++ + + A G + Sbjct: 438 VSSLLTASGVTSGVVGRSGDALFGAIINAVKKDTGSNLLSTPSIMTLDNEEARILVGQEV 497 Query: 294 LYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGD 347 T ++ ++ + G+ L P + + G I L ++ EVS V+ Sbjct: 498 PITTGEVLGDSNANPFRTIQRQNVGIQLEVKPQINAGGGITLFLRQEVSSVAGPVSVGSS 557 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 R+ +TT + G +VL GLL Q + P L +P LGALFR++ R++ Sbjct: 558 ELIINKREIETTALVDDGDIVVLGGLLDQQETQSAQRTPGLGDVPGLGALFRSTARERKK 617 Query: 408 TEIFIAATPFLVK-PVAMRDLSRP 430 T + + P +++ R+L+ P Sbjct: 618 TNLMVFIRPRIIRSSADARNLTAP 641 >gi|163802893|ref|ZP_02196781.1| MSHA biogenesis protein MshL [Vibrio sp. AND4] gi|159173300|gb|EDP58126.1| MSHA biogenesis protein MshL [Vibrio sp. AND4] Length = 531 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 108/303 (35%), Gaps = 29/303 (9%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202 +L V + S + + T + + ++V L + + QV L+ I Sbjct: 205 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDEIREVREFLGVSQERMQRQVILEAKI 264 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEGGDFSVKGVLDRFSFE 257 EV Q G S +S G S S + +F+ Sbjct: 265 LEVTLSDGYQQGIDWSNMSASIGNSGSIVVDRSPLSLPLDAIGTLLGGQTNVTFSDGNFK 324 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSV 307 V++ + + L+ P +TA + Q + G + T SS + Sbjct: 325 AVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVEL 384 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---------NAGDMPS--YRVRKA 356 T G+ L TP + G + L + V E + N +P +R++ Sbjct: 385 TPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEIKKLNLGGEFNNVQLPLAKSSIRES 444 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 D+ + G +V+ GL+K + +P L +P LG LFRN ++TE+ I P Sbjct: 445 DSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNVTQKTELVILLKP 504 Query: 417 FLV 419 +V Sbjct: 505 TVV 507 >gi|299529630|ref|ZP_07043067.1| type IV pilus secretin PilQ [Comamonas testosteroni S44] gi|298722493|gb|EFI63413.1| type IV pilus secretin PilQ [Comamonas testosteroni S44] Length = 704 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 26/247 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------------GPSKSF 230 QV ++ I E R + +G + S G + Sbjct: 451 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSSSGSSSKFPSGNFVNL 510 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A G FSV L ALE + ++ P L A G Sbjct: 511 PASVSGINTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 570 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 ++ Y + GAT+++ + L TP + G I L + +V++ G + Sbjct: 571 TEYPYSVTAP-NGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 627 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PL +P+LG LFR++ + E+ Sbjct: 628 IDTKHVKTQVLVENGGTVVIGGIFELEETNQLNKVPLFGDLPVLGHLFRSNTKASSKREM 687 Query: 411 FIAATPF 417 + TP Sbjct: 688 LVFITPK 694 >gi|56478233|ref|YP_159822.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1] gi|56314276|emb|CAI08921.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1] Length = 719 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 63/307 (20%), Positives = 114/307 (37%), Gaps = 37/307 (12%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G +A ++ + + + + V++LL+ QV ++ IAE+ Sbjct: 337 SGNASDRGGMIQADPVNNALI--IVAPEAIYRNLRHVIDLLD-RRRAQVYIEALIAEIST 393 Query: 208 DILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----------- 253 + + G Q + G+ S + +FGG + G G + + Sbjct: 394 ERAAEFGIQWQSANTPGAGSSSTFFGGTNFGGAGQNIIGAAQNIGSVGKGMNFLLGGGTV 453 Query: 254 -----------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F+ + LE + L+ P+L + + A G + T + Sbjct: 454 KVPINGQMVEVFNLSLLARFLETDSRTNILSTPSLVTLDNEGAKIVVGRNLPFITGQYTN 513 Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 ++ D G+ L P + G I L I E S V ++ P+ Sbjct: 514 TGGGTTPANPFQTIERRDVGLTLEVRPQISEGGAIRLDIYQEASSVVPTLDDSAGPTTNK 573 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R +TV + G I L GL++DD +E +PLL IP G+LFR R +T + + Sbjct: 574 RSIQSTVLVDDGAIIALGGLVEDDYSSGEEKVPLLGDIPFAGSLFRYDTRRRTKTNLVVF 633 Query: 414 ATPFLVK 420 P +++ Sbjct: 634 LRPVILR 640 >gi|160901128|ref|YP_001566710.1| general secretion pathway protein D [Delftia acidovorans SPH-1] gi|160366712|gb|ABX38325.1| general secretion pathway protein D [Delftia acidovorans SPH-1] Length = 787 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 98/272 (36%), Gaps = 38/272 (13%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------- 241 QV ++ I E++ + L Q G Q S++G + + Sbjct: 432 GRRAQVLIESLIVELKDNRLAQFGVQWQAILSNNGKVLGSIGNNSSVAGANILSLLSAFN 491 Query: 242 --------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + V + + + L+ + L+ P L + Sbjct: 492 KDGSINASGITGDTVNSMRGTNLGFTQSVNGNTTLGFLANFLQNSGDANILSTPNLMTLD 551 Query: 282 GQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + A G T S + T+V D G++L P + G + L + Sbjct: 552 NEEARIIVGQNVPMVTGSYASNSTGGTVNPFTTVERKDVGLMLRVRPQINENGTVKLAVF 611 Query: 334 TEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 EVS + + R ++ V + G IVL GL+ D+ Q ++ IPLL IP Sbjct: 612 QEVSSVDESTRKDTNGLTTNKRSIESNVLVEDGNIIVLGGLIDDNYSQAEDRIPLLGDIP 671 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 +LG LFRN+ R +T + + P +++ A Sbjct: 672 VLGNLFRNTNRKRNKTNLMVFLRPVVMRDAAA 703 >gi|330012388|ref|ZP_08307367.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3] gi|328533849|gb|EGF60524.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3] Length = 408 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 5/230 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGVL 251 QV L I + L+++G + + + S P + G + Sbjct: 176 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNIGKI 235 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + E L ALER + +A P L A Q AS G + Y+ S +GATSV + Sbjct: 236 NGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 295 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 296 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETLA 355 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 356 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 405 >gi|229530247|ref|ZP_04419635.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)] gi|229332020|gb|EEN97508.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)] Length = 559 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 97/263 (36%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247 QV L+ I EV Q G S SS+G S + + S SV Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPG 332 Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344 T SS + ++T G+ L TP + G + L + V E Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452 Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535 >gi|42523102|ref|NP_968482.1| general secretion pathway protein D [Bdellovibrio bacteriovorus HD100] gi|39575307|emb|CAE79475.1| general secretion pathway protein D [Bdellovibrio bacteriovorus HD100] Length = 765 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 56/290 (19%), Positives = 107/290 (36%), Gaps = 30/290 (10%) Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V+++ + S + V+N+L+ DQV ++ I E+ + G + Sbjct: 418 VKITADKTTNSLIVTASKQDYDVVLNILSKIDTPRDQVFVEAIIMEMSVNDGNSWGIGYY 477 Query: 219 ITG-SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----------------SFETVL 260 G S G F+S G + S + Sbjct: 478 QYGDSGYGKVGFNGLSNINDFLSPTGGSGAVIGFGQGKTVEVTDPVSKTTLKIPSLLGFI 537 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGG-----QHLYKTVSSSTGATSVTTHDYGVV 315 + L+ A L+ P L + Q G +++ +S T + D + Sbjct: 538 NFLKTAKKANILSTPQLMTLDNQEGELEVGDKVVVGENVQNVGTSGTTVRTPQFEDATIK 597 Query: 316 LHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSGGTIVL 370 L P + +I + I+ +V++ R T + + +G T+VL Sbjct: 598 LAIKPFISPASNQIRMEIKQQVAQLSTASTPKAFQDSTQPLAKRSLKTVINVNNGDTVVL 657 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GL+K+ Q+ +PLL IPI+G LF++ +++T + + TP +V+ Sbjct: 658 GGLMKEQDQESVTKVPLLGDIPIIGWLFKSRTIVKDKTNMVVFLTPKIVR 707 >gi|283955079|ref|ZP_06372582.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 414] gi|283793446|gb|EFC32212.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 414] Length = 470 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 17/272 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S K + L + QV + V+I V + G + Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQANNE 250 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F + + G G+ +F+++++ L + L+ P L A++ Q A + G Sbjct: 251 NSFI-QLQNGQGFVKNLGLRANLNFDSIVNFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309 Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Y+ SS G + TT G++L+ P + G+I LRI +S+ Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369 Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + P +K + V++ + T++L GL+ D K I LSKIPILG Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +LF+ + + TEI TP +V L Sbjct: 430 SLFKGEVLDSKATEIVFIITPSIVDSTNAPSL 461 >gi|262393141|ref|YP_003284995.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25] gi|262336735|gb|ACY50530.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25] Length = 530 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 30/304 (9%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202 +L V + S + + T + + ++V L + + QV L+ I Sbjct: 203 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 262 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256 EV + Q G S +S G S S + + + +F Sbjct: 263 LEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPPLDAIGTLLGGQTNVTISDGNF 322 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306 VL + + L+ P +TA + Q + G + T SS Sbjct: 323 NAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVE 382 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGD--------MPSYRVRK 355 +T G+ L TP + + G + L + EVSE V +N G + +R+ Sbjct: 383 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEVKKLNLGGEFQNIQLPLAKSSIRE 442 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +D+ + G +V+ GL+K ++L +P L +P LG LFRN E+TE+ I Sbjct: 443 SDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVTEKTELVILLK 502 Query: 416 PFLV 419 P +V Sbjct: 503 PTVV 506 >gi|85860506|ref|YP_462708.1| type IV secretion [Syntrophus aciditrophicus SB] gi|85723597|gb|ABC78540.1| type IV secretion [Syntrophus aciditrophicus SB] Length = 590 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 64/393 (16%), Positives = 132/393 (33%), Gaps = 57/393 (14%) Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 AD+ + L + G + V G + + + L + + Sbjct: 211 ADIRAV----LRLLAETGGVSIVAGPDVKGS------VNVHMRDVPWDQALETILDIHGL 260 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + + + + V +++ ++ E+ + + ++ + L Q+ Sbjct: 261 AKKEMGNVI----SVMSLEKKKKDEEVRKAAEKDQIEAEANRKKREQDL-LAEKGRLRQI 315 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------------- 240 +++ I E + +K +G S+ S F A +G + Sbjct: 316 SIEAKIVEASEEFIKNLGVTWGGAVSARMGSYPFQAAYGTNTRTTEGQTNPVSYPYPAGI 375 Query: 241 -----------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 V + + + ALE ++ + ++ P + Sbjct: 376 GYTTSGTGAVLSQAAVNMPGSIIGTPTLGVVIGGSKAVLDVQIAALESTSSGKIISTPKV 435 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 T + G +A G + Y G V + + L TP++ GRI ++I Sbjct: 436 TTMDGVTAKIKQGEEIPYT-TYDDKGYPRVNFKEAVLKLEVTPSITPDGRISMQINATND 494 Query: 338 EPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 GD + D+ V + G TIV+ G+ K G+P LS+IP+LG Sbjct: 495 RGDYAKAGILGDNVPIIKNEVDSKVVVEDGTTIVIGGVSKTTDDTSTSGVPWLSRIPVLG 554 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 LF++ +R ++ I TP ++ V + Sbjct: 555 WLFKSENTDRTRKQLLIFVTPKIIPDVEPGAAA 587 >gi|329905849|ref|ZP_08274237.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae bacterium IMCC9480] gi|327547489|gb|EGF32305.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae bacterium IMCC9480] Length = 327 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 57/279 (20%), Positives = 96/279 (34%), Gaps = 46/279 (16%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236 K++ + ++A QV ++ I E K +G + T + G Sbjct: 46 KLIQITDVATR-QVLIEARIVEADDTFSKNLGAKLGFTDLRTARGGDSGYQLSGNNRVGL 104 Query: 237 ------------------------------------KFVSEGGDFSVKGVLDRFSFETVL 260 + S+ L Sbjct: 105 TGNYLGVGEQTGQATITDGSFIPNSQFVSLPAAGINGLNAGSLAVSLFSAAANRFLNLEL 164 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALE + ++ P + Q A G + Y+ +SS GATSV + L TP Sbjct: 165 SALEADGRGKVISSPRVVTADQQQALIEQGEEIPYQKATSS-GATSVEFKKANLKLEVTP 223 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + G I L +V++ G A + + T V++ +GGT+VL G+ Sbjct: 224 QITPDGNIIL--TVDVNKDSRGAPAPGGFAINTKHVKTNVQVENGGTVVLGGIFTQRELD 281 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP IP++G LF+ + ++TE+ I TP +V Sbjct: 282 SVTKIPFFGDIPVVGNLFKTTGRTNDKTELLIFITPKIV 320 >gi|187925905|ref|YP_001897547.1| general secretion pathway protein D [Burkholderia phytofirmans PsJN] gi|187717099|gb|ACD18323.1| general secretion pathway protein D [Burkholderia phytofirmans PsJN] Length = 791 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 60/273 (21%), Positives = 99/273 (36%), Gaps = 38/273 (13%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 V++ L+ QV L+ I E+ + +G Q + +S + V+ Sbjct: 402 VIDQLDAR-RAQVYLEALIVELNSNTSGNLGIQWQVANNSIFAGTNLQTGSSNSIVNLTA 460 Query: 244 DFSVKG-------------------------VLDRFSFETVLHALERATAIRTLAEPTLT 278 G + +L AL + L+ P L Sbjct: 461 AAVAAGSTGGLAGALGNGTLQQGLNIGWIHNIFGVQGLGALLQALSQTADANVLSTPNLI 520 Query: 279 AISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + A G +T S S + D G+ LH P + G + L Sbjct: 521 TLDNEEAKIVVGTNVPIQTGSYSNLTSATATSAFNTYDRVDVGLTLHVKPQITDGGILKL 580 Query: 331 RIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 ++ TE S V G N P + R +TV +G IVL GL++D+ Q +P Sbjct: 581 QLYTEDSAIVTGTNNAATNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVP 640 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 LL IP +G LFR+ + R +T + + P ++ Sbjct: 641 LLGDIPWIGQLFRSEQKTRNKTNLMVFLRPVII 673 >gi|54302288|ref|YP_132281.1| putative pilus assembly transmembrane protein [Photobacterium profundum SS9] gi|46915710|emb|CAG22481.1| putative pilus assembly transmembrane protein [Photobacterium profundum SS9] Length = 217 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 12/190 (6%) Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 AISG+ A F SGG+ + ++ ++GV L F PTV+S I L + EVS Sbjct: 1 MAISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFIPTVMSADSINLALNIEVS 58 Query: 338 E----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 E P +PS R A TTVEL +G TI +AGLL ++I + E +P Sbjct: 59 EISNQNAVSIRPSGTNTQFFVPSLSKRGAKTTVELGNGQTIGIAGLLNENITDVVEKLPG 118 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L +PI+G LFR+ F + ETE+ I TP L KPV +D++ P D++ +D + + R Sbjct: 119 LGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLPTDNFVEPNDWEYYLLGR 178 Query: 448 VNKIYGPKEA 457 ++++ + A Sbjct: 179 MSELKRNEPA 188 >gi|264676808|ref|YP_003276714.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2] gi|262207320|gb|ACY31418.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2] Length = 704 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 26/247 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------------GPSKSF 230 QV ++ I E R + +G + S G + Sbjct: 451 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSSSGASTKFPSGNFVNL 510 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A G FSV L ALE + ++ P L A G Sbjct: 511 PASVSGVNTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 570 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 ++ Y + GAT+++ + L TP + G I L + +V++ G + Sbjct: 571 TEYPYSVTAP-NGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 627 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PL +P+LG LFR++ + E+ Sbjct: 628 IDTKHVKTQVLVENGGTVVIGGIFELEETNQLNKVPLFGDLPVLGHLFRSNTKASSKREM 687 Query: 411 FIAATPF 417 + TP Sbjct: 688 LVFITPK 694 >gi|95931255|ref|ZP_01313974.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] gi|95132691|gb|EAT14371.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] Length = 665 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 66/350 (18%), Positives = 115/350 (32%), Gaps = 38/350 (10%) Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 NL L D L TL ++ S G + ++ + Sbjct: 287 NLYYLENADAEELSKTLNEILSGIKKPATSSSAAAGGKGTIPAAAIQTNVTVSADKPTNA 346 Query: 171 SGRNQYANS--SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--SSSGP 226 N K ++ L+I QV ++ I E+ D + +G Q + G Sbjct: 347 LVINATPEDYVIIKDIIKQLDIR-RKQVYVEALIMELSMDATEALGSQLQGAFEVGNEGI 405 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDR-----------------------FSFETVLHAL 263 + G +S+ V +F ++ Sbjct: 406 VNLSSNSAPGGILSDPESLLTTSVNGLLAGGFSKLIGVDTDGDGVDDSQVTAFSALIKLS 465 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVV 315 + T + L+ P L + A G T + SV D + Sbjct: 466 KDDTNVNILSAPRLLTSDNEEAEIVVGRNVPIITSRLTDSTGSDSLAQSVSVERKDVALT 525 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGL 373 L FTP + + L + E ++ V + P++ RK TV G T+VL GL Sbjct: 526 LRFTPQITEGELVRLNVYQETTDLTDSVGDVNSVGPTFTTRKISNTVLARDGQTVVLGGL 585 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + + Q+ +PLL IP+LG LF++ +T + + TP ++ + Sbjct: 586 ISTNQQETISKVPLLGDIPLLGWLFKSKDNKEVKTNLLVFITPTIISDME 635 >gi|269104067|ref|ZP_06156764.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp. damselae CIP 102761] gi|268163965|gb|EEZ42461.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp. damselae CIP 102761] Length = 565 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 64/290 (22%), Positives = 104/290 (35%), Gaps = 35/290 (12%) Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + L KK + + + QV L+ I EV + Q G S Sbjct: 252 QASLISVRAYPNELREVKKFLGMSEQRLKRQVILEAKILEVTLNDSYQQGINWGNITRSI 311 Query: 225 GPSKSFAADF--------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 G GG +SE + +F V+ L + Sbjct: 312 GSGGVTIGQPSVVNPVTGLINTLPGGNDISELLGGQTNITITDGNFSAVMRFLSTQGDLN 371 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSVTTHDYGVVLHFTP 320 L+ P +TA + Q A GG + T SS+ ++T G+ L TP Sbjct: 372 VLSSPRVTAANNQKAVIKVGGDEYFVTNVSSSNVSGDNSTAAPDINLTPFFSGISLDVTP 431 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKADTTVELPSGGTIV 369 + G + L + V + V + ++ +R++D+ + SG +V Sbjct: 432 QIDDQGGVLLHVHPAVVDVTDEVKSIELGDKFGTYQLPLAKSSIRESDSIIHAHSGDVVV 491 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + GL+K +PLL IP LG LFRN +++TE+ I P +V Sbjct: 492 IGGLMKTSTHDQVSKVPLLGDIPGLGNLFRNINKVQQKTELVILLKPTVV 541 >gi|254418127|ref|ZP_05031851.1| general secretion pathway protein D [Brevundimonas sp. BAL3] gi|196184304|gb|EDX79280.1| general secretion pathway protein D [Brevundimonas sp. BAL3] Length = 718 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 58/373 (15%), Positives = 110/373 (29%), Gaps = 48/373 (12%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 + V + V+ L++ QV ++ + Sbjct: 330 GAIGSSTVTATGQRATIARFPGANALVIAGPADMQRTLADVIRRLDVR-RQQVLIEAIVV 388 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------------------ 233 E+ + ++++G Q G + ++ A+ Sbjct: 389 ELSDNAVRELGVQWLYGGENGVGLTNYTANATPLVNMAGGAYAGQLDKDDPLREQLQTLA 448 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + G + F +++A + L P++ + + A+F G + Sbjct: 449 LNSLVGANGFIGGAGVEVGDGLFGFIINAAKTDKGSNLLQTPSIMTLDNEEATFLVGQEV 508 Query: 294 LYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGD 347 T +S T+ D GV L P + + G I L ++ EVS G+ Sbjct: 509 PITTGQTLLDGNSNPFTTTDRKDIGVRLTVKPQINAGGSITLTLRQEVSAINGGLTRGAT 568 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 R+ TT+ + G V GLL + + IP L +P +GALFR++ R Sbjct: 569 DLVLDKRELQTTLVVDDGDIAVAGGLLDQNDIISTDKIPGLGDLPGVGALFRSNSRQRGR 628 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDH----------YSVEDDAKAFFFNRVNKIYGPKEA 457 T + + P +V+ D + + R A Sbjct: 629 TNLMVFLRPTIVR-TREEAQGLAADRWGYMRDQQQAVQPDREPSLDALVRDYMRTQAPAA 687 Query: 458 SEVEGQNYKGAIG 470 G Sbjct: 688 PATGQPMVIAPTG 700 >gi|262191511|ref|ZP_06049695.1| type II secretory pathway component PulD [Vibrio cholerae CT 5369-93] gi|262032609|gb|EEY51163.1| type II secretory pathway component PulD [Vibrio cholerae CT 5369-93] Length = 559 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 99/263 (37%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247 QV L+ I EV Q G S SS+G S + + S SV Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPG 332 Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-- 343 T SS + + +T G+ L TP + G + L + V E Sbjct: 393 VTDISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452 Query: 344 -----NAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 ++P +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 453 ILYRSEEIELPLAKSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535 >gi|229521807|ref|ZP_04411225.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80] gi|229341401|gb|EEO06405.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80] Length = 674 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 67/452 (14%), Positives = 145/452 (32%), Gaps = 82/452 (18%) Query: 49 KISIGLNKVIIL-QVPVDVQDVLVSDPTKADVVVHSPRT----MYLFGKNVGQANVILIG 103 I + + ++ ++ ++ V + + +VV + + + + + Sbjct: 162 NIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTP 221 Query: 104 HDGKQMLNLDILIERDI----AHLEMTLRRFIADSNIRVEMVSDTVVL------------ 147 K D + + L+R I ++ + + V+ Sbjct: 222 EFLKPKFVADERTNSILISGDPKVRERLKRLIKQLDVEMATKGNNRVVYLKYAKAEDLVE 281 Query: 148 ------------HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAG 192 G + + V ++ + S V+ L+I Sbjct: 282 VLKGVSENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLDVIGQLDIR- 340 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------- 237 QV ++ I E+ +G Q S S G Sbjct: 341 RAQVLIEALIVEMAEGDGINLGVQWGSLDSGSVIQYGNTGASIGNVMIGLEEAKEKTVTD 400 Query: 238 ------------------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 + + + +++A+ ++ L+ Sbjct: 401 SRWNSVTQTYEPYTRTESGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILS 460 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRI 328 P++T + ASF G + T SS +V + G+ L P + + Sbjct: 461 SPSITVMDNGEASFIVGEEVPVITGSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSV 520 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L+I+ EVS + A D+ + R+ +T+V + G +VL GL+ + + + +PLL Sbjct: 521 QLKIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLL 579 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+LG LFR++ E+ + + P +++ Sbjct: 580 GDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIR 611 >gi|189424346|ref|YP_001951523.1| general secretion pathway protein D [Geobacter lovleyi SZ] gi|189420605|gb|ACD95003.1| general secretion pathway protein D [Geobacter lovleyi SZ] Length = 648 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 88/421 (20%), Positives = 147/421 (34%), Gaps = 52/421 (12%) Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV--------EMVSDTVV 146 G V+ +L ++DI L L +++ ++ + V Sbjct: 230 GAVQVLADTRLNAVLLFGPEKDKKDIRSLIAQLDVTPPEASSKINVCFLENTDATEMAKV 289 Query: 147 LHGMV------RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM--------NLLNI-- 190 L G+V T + S F S +S+ V+ NLL + Sbjct: 290 LDGVVKGITAQTTTLQAGTVSAQSSPFDSGKVTITADKASNSLVVMASPTDYNNLLQVIK 349 Query: 191 ---AGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------GSSSGPSKSFAADFGG 236 QV ++V IAE+ + +G Q G P +F + G Sbjct: 350 KLDRRSKQVFVQVLIAEISPSKSRDLGVQSGAFAVGALGKYLQGGGIYDPFNTFGSLLGS 409 Query: 237 KFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + + L S +L ALE + L+ P + + A G Sbjct: 410 GSSTSPLSTLIADKLKNTSKPVTGAAILQALESEGMLNILSTPNILTTDNKEAEINVGEN 469 Query: 293 HLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 +K+ S+ + SV D G+ L P V I + + E+S Sbjct: 470 VPFKSSSTQSTFGTTESVERKDIGINLKIKPQVSEGDYIRMDLYQEISAVKSDKGDAVDL 529 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R A T+V + TIV+ GL++D + +PLL IP LG F+ + R++T Sbjct: 530 VTTKRSAKTSVVVKDNETIVIGGLIQDTEDNTIQKVPLLGDIPGLGWFFKTTTKTRKKTN 589 Query: 410 IFIAATPFLVKPVAMRDLSRPDDH----YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 + I TP +VK RDL+ + ++ + N N+I G +GQ Sbjct: 590 LLIMLTPQVVK--DARDLASITESQKGKFTEAA-KEFGPLNVQNEISGKATKPVSQGQES 646 Query: 466 K 466 + Sbjct: 647 R 647 >gi|91225619|ref|ZP_01260693.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01] gi|91189739|gb|EAS76013.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01] Length = 529 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 64/304 (21%), Positives = 111/304 (36%), Gaps = 30/304 (9%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202 +L V + S + + T + + ++V L + + QV L+ I Sbjct: 202 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 261 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256 EV + Q G S +S G S S + + + +F Sbjct: 262 LEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPPLDAIGTLLGGQTNVTISDGNF 321 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306 VL + + L+ P +TA + Q + G + T SS Sbjct: 322 NAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVE 381 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355 +T G+ L TP + + G + L + V E V ++ +R+ Sbjct: 382 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSIRE 441 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +D+ + G +V+ GL+K ++L +P L +P LG LFRN E+TE+ I Sbjct: 442 SDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVTEKTELVILLK 501 Query: 416 PFLV 419 P +V Sbjct: 502 PTVV 505 >gi|296273826|ref|YP_003656457.1| type II and III secretion system protein [Arcobacter nitrofigilis DSM 7299] gi|296098000|gb|ADG93950.1| type II and III secretion system protein [Arcobacter nitrofigilis DSM 7299] Length = 468 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 118/261 (45%), Gaps = 16/261 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 ++ KK +N ++I+ Q+ +K I E+ K++G ++ + G + S + + Sbjct: 152 VGSKSDTEIIKKFINKIDISNP-QIYIKAKIVEISETKTKEVGLEYGLNGFNKYSSTNLS 210 Query: 232 ADFGGKFVS----------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 F + + + ++ L++ AI ++EP++ I+ Sbjct: 211 TFSSSFNSLSNTAINFSEFSTFGFDLNSLSKGLNLSATINFLKQNQAIDVISEPSILCIN 270 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + +S G +KT ++ + + + G+ L P +S +I L+I T + + Sbjct: 271 NKESSIYVGETKSFKTGQTTNTSGTTESFKREEVGLRLKVKPR-ISDNKIILQINTVLED 329 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + ++ ++ TT L + ++++ GL+K Q + G+P+L IPILG LF Sbjct: 330 VKESTTSENL-DTSKKEVITTAILNNAESVIIGGLIKTKKFQTESGLPVLKDIPILGTLF 388 Query: 399 RNSRFNREETEIFIAATPFLV 419 +N ++ ++ + + TP++V Sbjct: 389 KNEKYINDKMNLVVIITPYIV 409 >gi|119773310|ref|YP_926050.1| type II and III secretion system protein [Shewanella amazonensis SB2B] gi|119765810|gb|ABL98380.1| type II and III secretion system protein [Shewanella amazonensis SB2B] Length = 703 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 58/284 (20%), Positives = 105/284 (36%), Gaps = 48/284 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 340 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATESGGGTQFNNLGPTIGEIGAGI 398 Query: 236 ---------------------------------GKFVSEGGDFSVKGVLDRFSFETVLHA 262 + G + + F ++ A Sbjct: 399 WQARGEEASEVTTIDGNGNPIVSKNPEKRGDITLLAQALGKVNGMAWGVAMGDFGALIQA 458 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVTTHDYGVVL 316 + T LA P++T + Q A+F G + T + S +V + GV L Sbjct: 459 VSSDTNSNVLATPSITTLDNQEAAFIVGDEVPVLTGAQNSSNGNSNPFQTVERKEVGVKL 518 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + + L I+ EVS ++ R+ TTV SG +VL GL+ + Sbjct: 519 KVTPQINEGNAVKLAIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINE 576 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++Q+ + +P+L IP+LG LF++S +++ + + P +++ Sbjct: 577 EVQESVQKVPILGDIPLLGHLFKSSSSGKKKKNLMVFIKPTIIR 620 >gi|262377049|ref|ZP_06070275.1| general secretion pathway protein D [Acinetobacter lwoffii SH145] gi|262308087|gb|EEY89224.1| general secretion pathway protein D [Acinetobacter lwoffii SH145] Length = 710 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 102/291 (35%), Gaps = 37/291 (12%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + T Q + +++LL++ + QV ++ I + K++G + I Sbjct: 414 ARTNTLIVNDTQPFIDKIRNMVDLLDVQVK-QVMVEARIVRASTEFAKEMGVKWGILSQG 472 Query: 224 SGPSKSFAADFG---------------------------------GKFVSEGGDFSVKGV 250 + G + G Sbjct: 473 ITNNDHLLVGGSDTTLWDLRTPEINSTTGIPTYEIQRPDNLNVDLGVENAAGRIAFGLIS 532 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVT 308 L F + L AL+ ++ P + Q A+ SG + Y++ S + Sbjct: 533 LSDFMLDLELSALQADGYGEVISTPKVLTADKQKATVESGVEVPYQSTEGSGANATATTE 592 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 D + L TP++ G++ + + S+ + GV + +T V + +G T+ Sbjct: 593 FKDVVLKLDVTPSITPDGKVQMSLDIS-SDSIAGVTPMGEYYLNKNRLNTNVLVENGETV 651 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + + +P L IP LG LFR + + E+ I TP +V Sbjct: 652 VLGGIFEQETLNNQTKVPFLGDIPYLGRLFRKDVKSDNKRELLIFVTPRIV 702 >gi|254225450|ref|ZP_04919061.1| general secretion pathway protein D [Vibrio cholerae V51] gi|125622084|gb|EAZ50407.1| general secretion pathway protein D [Vibrio cholerae V51] Length = 675 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 113/321 (35%), Gaps = 50/321 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKVTIAE 204 G + + V ++ + S + +V+ L+I QV ++ I E Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237 + +G Q S S G Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTEKKPIRNSETGEIKY 412 Query: 238 -------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + G + + +++A+ ++ L+ P++T + Sbjct: 413 YEETTTKGDYSKLASALSGLQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGE 472 Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 ASF G + T ++ +V + G+ L P + + L I+ EVS Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591 Query: 400 NSRFNREETEIFIAATPFLVK 420 ++ E+ + + P +++ Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612 >gi|269214941|ref|ZP_06158925.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970] gi|269208722|gb|EEZ75177.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970] Length = 254 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 22/246 (8%) Query: 197 TLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAAD---------FGGK 237 ++ I E + +G + TG G + F Sbjct: 1 MIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEGGDGKWSAQTSINLP 60 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + S+ + + L A E + +TLA P + + + A SG + Y+ Sbjct: 61 VAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGTEIPYQD 120 Query: 298 VSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVR 354 SSS ++S T + L TP + G+I + ++ PV V + + Sbjct: 121 TSSSGSSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPVDCTVKDETTKCIQTK 180 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +T + +GGT+++ G+ +++ +PLL IP++G LF+ + E+ I Sbjct: 181 NLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFKTRGKSTNRRELLIFI 240 Query: 415 TPFLVK 420 TP ++ Sbjct: 241 TPRIMD 246 >gi|229512666|ref|ZP_04402135.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21] gi|229350343|gb|EEO15294.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21] Length = 559 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 97/263 (36%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247 QV L+ I EV Q G S SS+G S + + S SV Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPG 332 Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344 T SS + + +T G+ L TP + G + L + V E Sbjct: 393 VTDISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452 Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535 >gi|119505541|ref|ZP_01627613.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2080] gi|119458650|gb|EAW39753.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2080] Length = 723 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 64/368 (17%), Positives = 124/368 (33%), Gaps = 72/368 (19%) Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + I I A + L ++ + +VV+ +I + A +L+E Sbjct: 367 APLQSEFIRIRYAKASEVVNLFEAGSEEGGSLVSDRGSVVVDERTNSIIITDTATKLAEI 426 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 + ++ +++ QV ++ I ++ +++G + Sbjct: 427 ---------------RDLIERVDVPIR-QVMIEARIVIASTNLDEELGIEWGGGYIGIDS 470 Query: 227 SKSFAADFGG-------------------------------------------------- 236 S G Sbjct: 471 SNGNIYSASGSREQVVSFNQDTVAGVTPTLNYPVQGGQQQGGNQGGDGQQQQQGLGAALV 530 Query: 237 --KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 F+V + L ALE + +++P + Q A+ SG + Sbjct: 531 DLGVSQATSGFAVGFTSNDLFLTAELSALESSGQGEVVSQPKIITGDKQLATIKSGSEIP 590 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSY 351 Y+ ++S GAT+V+ + + L TP + RI L + + V G +P+ Sbjct: 591 YQEGAAS-GATTVSFKEAVLKLEVTPNITPDDRILLDLVVNQDSLGDLVPSGTGGLIPTI 649 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + T V + +G T+VL G+ ++D +P L IP LG LF+N+ +TE Sbjct: 650 NTTQLTTQVLVGNGETVVLGGVFQNDEITQIRKVPFLGDIPYLGTLFKNTASKTSKTETL 709 Query: 412 IAATPFLV 419 I TP ++ Sbjct: 710 IFITPRIL 717 >gi|262163787|ref|ZP_06031527.1| S-protein secretion component D [Vibrio mimicus VM223] gi|262027767|gb|EEY46432.1| S-protein secretion component D [Vibrio mimicus VM223] Length = 713 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 107/280 (38%), Gaps = 22/280 (7%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205 + +Q + S + ++++ LL QV ++ TIAE+ Sbjct: 421 SKSNKDMQVVTENYRVVVDSKRNSIFFTGEYADYQRLVELLRFVDKRPQQVLIQATIAEI 480 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 D +Q G IT + A F +S G F A + Sbjct: 481 NIDDAQQFGVDFDITSGTITGGTKGLAGFDNGVLSLTGVFG--------DVTMGFRAALK 532 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFT 319 + L+ P + A++ ++A T G Q T S G T+ D GV L Sbjct: 533 TGKAQVLSSPRIIAMNQEAARITVGDQIQVVTGEVSGGGDDSKATTTYKYVDTGVTLDII 592 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 PT+ G + L I EVS G + R T + SG T+ + GL+K DI Sbjct: 593 PTINQNGLVELEISQEVSNKGTGTD------INKRSLQTKLLADSGDTVFMGGLIKQDIG 646 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL IP LG LF+ ++ E+ + TP+++ Sbjct: 647 ETDNRVPLLGDIPYLGNLFKYKSQTQKSVELVLLITPYVI 686 >gi|171463462|ref|YP_001797575.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193000|gb|ACB43961.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 509 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 100/251 (39%), Gaps = 18/251 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 K+++ L+I +V ++ I E D ++G + ++ + + G V + Sbjct: 262 KLISKLDIRT-QEVLIEAFIVEADDDWQYELGSRFGYRNTTGNGTSTNPTSAVGGAVGDL 320 Query: 243 GDFSVKGV--------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + ++ + L A+E+ + ++ ++ P + + + A Sbjct: 321 ANANIFSRPVTGAPFGLGYLFQTTASQLKVELTAMEKLSLVKIISNPHVFTMDNEEAVVI 380 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 G Q Y T + D + L TP+++ G + L + P + Sbjct: 381 DGVQIPYPVPGVGTNQITYEFKDAALKLTATPSIVGDGNLFLNMIVNKDSPNYSTSP--- 437 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS R+ + + + G V+ G+ + E +PLL IP+LG+LF +R ++T Sbjct: 438 PSINKREVRSKLLIQDGTIAVIGGIYDQTKENTVEKVPLLGSIPLLGSLFSYTRKADKKT 497 Query: 409 EIFIAATPFLV 419 ++ + P ++ Sbjct: 498 QLLVFIAPKIL 508 >gi|315637872|ref|ZP_07893062.1| general secretory pathway protein D [Campylobacter upsaliensis JV21] gi|315482113|gb|EFU72727.1| general secretory pathway protein D [Campylobacter upsaliensis JV21] Length = 468 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 98/255 (38%), Gaps = 16/255 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L + QV + V+I V + G + + + S Sbjct: 197 GEYITKLENRLKKQVIIDVSIIAVNLNENHSSGINWQNFNLDFASTTQNGQNSFIQLQSG 256 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G G+ +F +VL+ L + + L+ P L A++ Q A + G Y+ SS Sbjct: 257 QGFVKNLGLRANINFNSVLNFLSQNGKTQVLSSPKLMALNNQQAIISVGDTINYQVKESS 316 Query: 302 TGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----- 347 G + TT G++L P + +I LRI +S+ + Sbjct: 317 KGTENGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPR 376 Query: 348 --MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P +K T V + + T++L GL+ + + + LSKIP+LG LF + Sbjct: 377 TIAPDTIQKKLSTVVSMENNQTLILGGLISHNQIKEASEVNFLSKIPLLGLLFSGDETSS 436 Query: 406 EETEIFIAATPFLVK 420 TEI TP +V Sbjct: 437 NSTEIVFIITPSIVD 451 >gi|332994893|gb|AEF04948.1| pilus (MSHA type) biogenesis protein MshL [Alteromonas sp. SN2] Length = 557 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 23/250 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKG 249 QV L+ I EV + Q G + +++G S S A G +S Sbjct: 285 TKQVILEARILEVELNDGYQQGINWNEILANTGNTDFSLSTTAGTLGNDISATLGGVTSL 344 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------- 301 F VL L ++ L+ P +TAI+ Q A G + T SS Sbjct: 345 AFLNKDFSGVLSLLSTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSDSTVTSTT 404 Query: 302 ---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MP 349 + +T G+ L TP + G + L + V E + Sbjct: 405 TSISPDIELTPFFSGIALDVTPQIDDKGTVLLHVHPSVIETAEQQKVVTMDDEQIVLPLA 464 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++DT + SG +V+ GL++ + PLL IP+ G LF+N + + + E Sbjct: 465 QSTIRESDTIIRAGSGEIVVIGGLMQTSQTDVVSKTPLLGDIPLFGELFKNRQVSETKKE 524 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 525 LIILLKPTVV 534 >gi|325922269|ref|ZP_08184050.1| type IV pilus secretin PilQ/competence protein [Xanthomonas gardneri ATCC 19865] gi|325547222|gb|EGD18295.1| type IV pilus secretin PilQ/competence protein [Xanthomonas gardneri ATCC 19865] Length = 620 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 97/267 (36%), Gaps = 33/267 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------------SS 224 DQV ++ I + +G + I G + Sbjct: 352 RPVDQVLIESRIVIATDTFARDLGARFGIAGRRQYGDNTGVISGSTANNVSIINDGLHNV 411 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 +F G S G + + F+ + L A++ ++ P + + + Sbjct: 412 PAGLNFNLPAGTFTTSTAGSIAYTLLGRNFALDMELSAMQEEGRGEVVSNPRIVTANQRE 471 Query: 285 ASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVS 337 G + + +V + + L TPT+ + R+ L + EV+ Sbjct: 472 GVIKQGREIGYVTITAASGGGQSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 531 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 ++ G +P R+ +T V + G T+V+ G+ + ++ +P L IP LG L Sbjct: 532 RFIVLDGYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESVSKVPFLGDIPFLGNL 591 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAM 424 F+ ++E+ E+ + TP +++ + Sbjct: 592 FKKRGRSKEKAELLVFVTPKVLRVASA 618 >gi|262190137|ref|ZP_06048422.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio cholerae CT 5369-93] gi|262033978|gb|EEY52433.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio cholerae CT 5369-93] Length = 675 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 113/321 (35%), Gaps = 50/321 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKVTIAE 204 G + + V ++ + S + +V+ L+I QV ++ I E Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237 + +G Q S S G Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTEKKPIRNSETGEIKY 412 Query: 238 -------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + G + + +++A+ ++ L+ P++T + Sbjct: 413 YEETTTKGDYSKLASALSGLQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGE 472 Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 ASF G + T ++ +V + G+ L P + + L I+ EVS Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591 Query: 400 NSRFNREETEIFIAATPFLVK 420 ++ E+ + + P +++ Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612 >gi|167564371|ref|ZP_02357287.1| type II/III secretion system protein [Burkholderia oklahomensis EO147] Length = 521 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 33/295 (11%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQV 196 + L Q ++ + + NLL + QV Sbjct: 227 ARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRLVQIADLIGKLDTPSRQV 286 Query: 197 TLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEGGD 244 ++ I E R + +G + + +G A G F + Sbjct: 287 LIEARIVEGDRGFSRNLGARLALRAPDAGDRATGVVAGRNGTLADLTARPIGGFDAATAG 346 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ + L ALE + ++ P + A G + Y+ G Sbjct: 347 LTLFAARASRLLDVELSALESEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGV 405 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P + GR+ L + ++++ +G P+ + T VE+ + Sbjct: 406 SGVQFRRATLKLEVEPQITPDGRVILDL--DIAKDSVGEETASGPAIHTKHVQTRVEVEN 463 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 464 GGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRALRAQRSELVVYITPTVV 518 >gi|170740267|ref|YP_001768922.1| general secretion pathway protein D [Methylobacterium sp. 4-46] gi|168194541|gb|ACA16488.1| general secretion pathway protein D [Methylobacterium sp. 4-46] Length = 779 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 120/245 (48%), Gaps = 17/245 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 A QV + VTIAEV+ + + G Q + S G ++ + G + G +V Sbjct: 503 AVPAQVAVNVTIAEVKLNDELKHGVQFFLDSRSLGLGRNKGS-VGLVSAAASGASNVLKP 561 Query: 251 LDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + F+F + V++AL+ T ++ L+ P+L + Q A+ G T + + Sbjct: 562 GNGFNFLVGGYSGPDVVINALDGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQS 621 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 V D G++L+ P + + ++I+ E+S V G + P+ R+ Sbjct: 622 VDFANAPLINQVEFRDTGIILNVIPRIGQNDAVTMQIEQEISAVVGGSDTLT-PTISKRR 680 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +T+ + +G T++LAGL+ D Q+ ++GIP+L ++P +GALF ++ E TE+ + Sbjct: 681 VASTISVANGQTVLLAGLISDKHQRERDGIPILGRLPQIGALFSSTNNADERTELVVFIR 740 Query: 416 PFLVK 420 P +V+ Sbjct: 741 PVVVR 745 >gi|83720708|ref|YP_443529.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|257137686|ref|ZP_05585948.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|83654533|gb|ABC38596.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 576 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 33/295 (11%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQV 196 + L +Q ++ + + NLL + QV Sbjct: 282 ARAADVQRLLSGSAAQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQV 341 Query: 197 TLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEGGD 244 ++ I E R + +G + + +G A F + Sbjct: 342 LIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGFDAATAG 401 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ + L ALE + ++ P + A G + Y+ G Sbjct: 402 LTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGV 460 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P + GR+ L + +V++ +G P+ + T VE+ + Sbjct: 461 SGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVEN 518 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 519 GGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 573 >gi|261209946|ref|ZP_05924246.1| MSHA biogenesis protein MshL [Vibrio sp. RC341] gi|260841011|gb|EEX67543.1| MSHA biogenesis protein MshL [Vibrio sp. RC341] Length = 551 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 97/263 (36%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + QV L+ I EV + G S S++G + + + S+ Sbjct: 265 RMQRQVILEAKILEVTLSDGYEQGINWSKAFSANGTNYQIGTGTIAQDTNGNPISSILPG 324 Query: 251 LD---------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 LD SFE VL + + L+ P +TA + Q A G Y Sbjct: 325 LDAIGTLLGGQSNVVVSSGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 384 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 T SS + ++T G+ L TP + G + L + V E Sbjct: 385 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDKGNVLLHVHPAVIEVEQQTKR 444 Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 445 ITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDRVAKVPFLGDVPGLGH 504 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 505 LFRNTSKQTQKTELVILLKPTVV 527 >gi|146305583|ref|YP_001186048.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp] gi|145573784|gb|ABP83316.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp] Length = 706 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 93/270 (34%), Gaps = 36/270 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236 +++ L+I QV ++ I E D K +G + + + S G Sbjct: 429 RIVAQLDIPVR-QVMIEARIVEANVDYDKALGVRWGGSVRNGAWDVSGKDGVQGFDKDTG 487 Query: 237 ----------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 + ++ + + L A+E+ Sbjct: 488 VRAPFVGTDTIGRTTLEDGLARLPFVDMGVQNSTSGIAIGYLGSNIVLDLQLSAMEKTGN 547 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 +++P + ++A G + Y+ SSS ++ + + + L TP + RI Sbjct: 548 GEIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALALEVTPQITPDNRI 606 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + ++ P +P + + V + G TIV+ G+ + E +P L Sbjct: 607 IMEVKVTKDAPDFANLVNGVPPLNKNEVNAKVLVNDGETIVIGGVFSNTQTNAVEKVPFL 666 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFL 418 +P LG +FR + E+ + TP + Sbjct: 667 GDLPFLGRVFRRDIVRDNKAELLVFITPRI 696 >gi|297570248|ref|YP_003691592.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] gi|296926163|gb|ADH86973.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] Length = 532 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 59/310 (19%), Positives = 110/310 (35%), Gaps = 27/310 (8%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------ 186 D ++ T +G V T + + ++ + ++N Sbjct: 227 DETVQTTPAPGT---NGEVTTTRRRD-VKGAKGYYAIDKPIGLITVNAPRPLVNKIEEYL 282 Query: 187 -LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-SEGGD 244 L Q++++ I EV D + G S + G + G Sbjct: 283 DNLKSRLFRQISIEAKIVEVNLDEQHKSGIDWRGVLSGKHLNFELFGPEGIIYPWDAAGG 342 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + F+ +L A+E A LA P ++ ++GQ A T G Y + +T Sbjct: 343 GVTQATIGPNPFQVLLDAIETQGAADVLANPKISVMNGQPALITVGETFRYISQVETTTD 402 Query: 305 T--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------GVNAGDMP 349 T + T G+ L PT+ I L + S +P Sbjct: 403 TGGGISTSVTTDTVMSGLGLAVLPTITDQNEIVLSLTPVTSSLTQPMQERTFQGMTVQLP 462 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R+ ++ V++ G T+++ GL+ + +P+L IPILG LF + + E Sbjct: 463 QINIRELNSVVKVRDGDTLMIGGLIDNVQDSTSHRVPILGNIPILGKLFSHETKTSRKRE 522 Query: 410 IFIAATPFLV 419 + I P ++ Sbjct: 523 LVILLQPTII 532 >gi|119503108|ref|ZP_01625193.1| general secretory pathway protein D precursor [marine gamma proteobacterium HTCC2080] gi|119461454|gb|EAW42544.1| general secretory pathway protein D precursor [marine gamma proteobacterium HTCC2080] Length = 743 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 101/237 (42%), Gaps = 13/237 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVL 251 QV ++ +I EV + + G + + G S G+F G + V +L Sbjct: 481 PTQVLIEASIVEVSLNDQLKYGLEWTFNNQIGGSDYSGIGAISDGEFNVAGAEGPVAQLL 540 Query: 252 DRF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSS 300 + VL+AL + + ++ P++ + A+ G Q + Sbjct: 541 KGQLCSFKWCDYVAVLNALATESLVNVISTPSVMVLDNNVATINVGDQVPINSGSTITNG 600 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 +++ D GV L P+V + G + L + V++ V ++ + R ++ V Sbjct: 601 GNTIQNISYKDTGVQLTVRPSVNAGGLVTLDVLQTVTD-VGNIDVTGNRRFLERSIESRV 659 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + SG ++VL GL++++ + G+P K PI+G LF + R+ TE+ + TP Sbjct: 660 AVRSGESVVLGGLIRENAANNENGVPWFYKAPIIGPLFGTTEKKRDRTELLVIITPR 716 >gi|83648610|ref|YP_437045.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC 2396] gi|83636653|gb|ABC32620.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC 2396] Length = 720 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 98/272 (36%), Gaps = 50/272 (18%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI----------------------------------- 219 QV ++ I R D ++++G Q Sbjct: 445 QVLIEARIVRARSDAVEELGVQWGGTRVAGNDDSGQILIGGGMESNIEASNEIARFNTEL 504 Query: 220 ------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 G + S A G + ++ + L A E Sbjct: 505 LNNRNSGDTTIPDGPTLATFPSALAVDLGVTRANTSGLAIGFSKGSTLLQMELSAFESDG 564 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A+P + Q+A SG + Y+ SS+GATSV+ + L TP + + Sbjct: 565 KGEIVAQPKIVTADRQTARIESGEEIPYQEA-SSSGATSVSFKKAVLSLEVTPQITPDDK 623 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I + + +++ GV ++PS + +T V + +G TIVL G+ + P Sbjct: 624 IIMDLV--INQDSRGVVTANIPSIDTNEIETQVLVGNGETIVLGGIFTSEQSSTVTKTPF 681 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L IP LG LFR + E +E+ + TP L+ Sbjct: 682 LGDIPYLGRLFRKTENVNERSELLVFITPKLI 713 >gi|109899541|ref|YP_662796.1| type II and III secretion system protein [Pseudoalteromonas atlantica T6c] gi|109701822|gb|ABG41742.1| type II and III secretion system protein [Pseudoalteromonas atlantica T6c] Length = 711 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 12/242 (4%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V ++V +AEV+ + + G + S + + G + G + ++ Sbjct: 452 VMVEVILAEVQLNDSEDTGVEWLANSSLGRFGITSSTIGGLGLGASGFNMTLD---SAGQ 508 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVT 308 +L+ + + P L SG AS G + T +S + +++ Sbjct: 509 TRAMLNLFYKNEKANIRSRPRLMVKSGGEASIDVGNEIPVITSNSQSTTDSDAVVLQTIS 568 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGT 367 GV+L PTV + G + + I E+SE ++ D P+ RK TTV L GG+ Sbjct: 569 YRKTGVLLEVKPTVHASGFVDIEITQELSEATETSSSDIDSPTILNRKISTTVTLRDGGS 628 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRD 426 ++L GL+ +G+P+L ++P++G LF ++ TE+ I P+++ P Sbjct: 629 VLLGGLISSTTSTGTQGVPILGRLPMIGKLFSTDSNAQDRTELMIMIIPYILNSPDEAEQ 688 Query: 427 LS 428 L+ Sbjct: 689 LT 690 >gi|264676762|ref|YP_003276668.1| general secretion pathway protein D [Comamonas testosteroni CNB-2] gi|262207274|gb|ACY31372.1| general secretion pathway protein D [Comamonas testosteroni CNB-2] Length = 793 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 66/327 (20%), Positives = 114/327 (34%), Gaps = 43/327 (13%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G + T + V++ L+ QV ++ I EV D Sbjct: 387 GTAQQPSTGGMIQADPTTNSLIITAPGPLYRQLRTVIDKLD-GRRAQVLIEALIVEVSAD 445 Query: 209 ILKQIGFQHS--------------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 Q+G Q S + G S + G +++ ++ Sbjct: 446 KAAQLGVQWSSVIRNNGRVLGVLGNGTSISGISNIFGLSGAVGNLVNGTPLTDSQASAIG 505 Query: 249 G-----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G V S +++ ++ L+ P L + + AS G + T Sbjct: 506 GMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTNILSTPNLMTLDNEEASIMVGENVPFPT 565 Query: 298 VSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347 S + T+ D G +L P + G I + + E S G NA Sbjct: 566 GSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQINENGTIKMAVYQENSAVKQGTANAQS 625 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + R ++ V + G +VL GL+ D+ Q +E +PLL IP+LG LFRN+ R++ Sbjct: 626 GATTTKRSIESNVLVEDGAIVVLGGLIADEYSQSQERVPLLGDIPLLGNLFRNTSRERKK 685 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHY 434 T + + P +++ D Y Sbjct: 686 TNLMVFLRPTVLRDANSTS-QLSQDRY 711 >gi|323494823|ref|ZP_08099920.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546] gi|323310931|gb|EGA64098.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546] Length = 389 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 113/260 (43%), Gaps = 22/260 (8%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------- 232 + K+++ L++A + QV ++ I V L+++G + + +++ ++ Sbjct: 130 AVKQIVRSLDVAVK-QVQIEARIVTVDEGQLEELGVRWGLNQNNNSRNRIAGGIEVNNLD 188 Query: 233 -----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + F + + + L A++ ++ P L + Sbjct: 189 QSSLDDRLNVNLGATSVNAASVAFRLATLGSDVLLDLELSAMQTEAKAEVISRPKLMTTN 248 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-- 339 Q+A G + Y SS GA+SV + L TP +LS R+ L + P Sbjct: 249 KQAAYIEQGSEIPY-FESSENGASSVAFKKAVLSLKVTPQILSDDRLILDLSVTQDRPGN 307 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V+ +G+ + ++ DT V + +G T+VL G+ + + + +PL +P++G+LFR Sbjct: 308 VVKTGSGEAVAINTQRIDTQVLVNNGQTVVLGGIYQHSVTDAVDKVPLFGDLPLIGSLFR 367 Query: 400 NSRFNREETEIFIAATPFLV 419 S N ++E+ I TP +V Sbjct: 368 RSYQNIAKSELLIFVTPTIV 387 >gi|312795821|ref|YP_004028743.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica HKI 454] gi|312167596|emb|CBW74599.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica HKI 454] Length = 655 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 60/364 (16%), Positives = 122/364 (33%), Gaps = 35/364 (9%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 R E V + G R + A S T + ++ ++ QV Sbjct: 251 RAEDVRTMICASGSQRLLSSRGAANADSRTNQLFVTDVPGRLADIASLIQAID-RPTRQV 309 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------ADFG 235 ++ I E + +G + ++ G S + + A Sbjct: 310 LIEARIVEADDGFSRALGARVAMLKRDGGDSPTSSGEMASQGNTGAGLRGPMVDLLAAPL 369 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 F + + L+ALE R ++ P + A G + Y Sbjct: 370 SGFAPASAGIGLLSASVSRLLDIELNALEMQGRGRVVSSPRVITADRFKAVVEQGAEVPY 429 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 +T + ++V + L P + G + L + ++ + +G P+ ++ Sbjct: 430 QT--RTQRGSAVQFRRATLKLEVEPRITPRGHVILDL--DIVKDSVGSETLHGPAIHTKR 485 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T+VE+ +GGT+ + G+ D +Q + +P+L IP++GALFR+ + +E+ I T Sbjct: 486 VQTSVEVENGGTVAIGGIYSQDDRQDEARVPILGDIPLIGALFRHRIRSDRHSELIILIT 545 Query: 416 PFLV---KPVAMRD------LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 P +V + A + P + + + + + Sbjct: 546 PTVVTGLQATAPGARHQDLGGATPRPGGAEAGQRRLAEADPLQSAEVDPLQGAEADPSRG 605 Query: 467 GAIG 470 G Sbjct: 606 ADAG 609 >gi|89093859|ref|ZP_01166805.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92] gi|89081989|gb|EAR61215.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92] Length = 524 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 99/245 (40%), Gaps = 20/245 (8%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I EV + Q G SI G SG + +F G + K L Sbjct: 254 RQVVIEAKILEVTLNNGFQAGVNWSILGEPGSGNTANFTQSSVGLTNQDAIGGIFKADLS 313 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------- 302 F V+ L ++ L+ P ++ ++ Q A G + T +T Sbjct: 314 IGDFSAVIELLGSQGDVQVLSSPRVSTVNNQKAVIKVGTDEFFVTEVENTTTTGTSTTTS 373 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PVIGVNAGDMPS--YRV 353 + +T G+ L TP + + G I L I VSE +G + ++P + Sbjct: 374 PSIELTPFFSGIALDVTPQISANGDIVLHIHPTVSEVVDQQKQISVGTDDFNIPLALSSI 433 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R++D+ V SG IV+ GL+K + P L IP +G LF+ R +TE+ I Sbjct: 434 RESDSIVRAESGQVIVIGGLMKSSDSDTQAKTPGLGDIPGVGNLFKQKRQAGSKTELVIM 493 Query: 414 ATPFL 418 P L Sbjct: 494 LRPVL 498 >gi|261253997|ref|ZP_05946570.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891] gi|260937388|gb|EEX93377.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891] Length = 552 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 118/318 (37%), Gaps = 42/318 (13%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELS-ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 ++E+ ++ G +++ + +A ++ + + + S++ Q Sbjct: 218 QLEVAVSQLIGSGNGQSVVVTPQASVITIRAYPDEIREVRSFLGISQQ-------RMHRQ 270 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVS 240 V L+ I EV Q G S SS+G + + G + Sbjct: 271 VILEAKILEVTLSDGYQQGINWSKAFSSNGTNYTIGQGSIVKDASGSIIPAALPGLDAIG 330 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V+ SFE VL + + L+ P +TA + Q A G Y T S Sbjct: 331 TLLGGQSNLVISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLS 390 Query: 301 S----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------GV 343 S + +T G+ L TP + G + L + V + G Sbjct: 391 SVVGSGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEIGYGN 450 Query: 344 NAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + +P +R++D+ + G +V+ GL+K + +P L IP LG LFRN+ Sbjct: 451 TSITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDIPALGHLFRNT 510 Query: 402 RFNREETEIFIAATPFLV 419 ++TE+ I P +V Sbjct: 511 TKLTQKTELVILLKPSVV 528 >gi|163783780|ref|ZP_02178765.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1] gi|159880969|gb|EDP74488.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1] Length = 550 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 18/243 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFV----- 239 QV ++ I EVR+++++++G S S G + G Sbjct: 308 PPQVKIEARILEVRKEVVRELGINWSALLSNAKVQQSWSGGAGVNLGVGQAGAITPSLSA 367 Query: 240 SEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297 + GG + + L A ER I++LA+PT+ I+GQ+A G + Y+T Sbjct: 368 TPGGILTFTYAKGALNALNLRLSAFERLGKIKSLAKPTIVTINGQNAVIKQGQEIPYQTA 427 Query: 298 -VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 ++ + S+ + + L+ P + GRI L + E+ + + GV P+ ++ Sbjct: 428 VIAGGSSVPSIQFKEAVLELNVLPIISPDGRILLDM--ELKQEIPGVQTPIGPTIIKKQV 485 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V + +G TIV+ G++ + KEG+ L ++PIL LF + ++ E+ I TP Sbjct: 486 STKVIVNNGDTIVIGGIIDSLNRNTKEGVAGLVRVPILKWLFGQESKHIQDIELLIFITP 545 Query: 417 FLV 419 ++ Sbjct: 546 SII 548 >gi|170723341|ref|YP_001751029.1| general secretion pathway protein D [Pseudomonas putida W619] gi|169761344|gb|ACA74660.1| general secretion pathway protein D [Pseudomonas putida W619] Length = 650 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 63/342 (18%), Positives = 115/342 (33%), Gaps = 38/342 (11%) Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + L + + LR + + E + G + A + Sbjct: 267 TQVIYLRHANAGEVVKVLRGLSQEGGVPSEGAGE-----GEAKDKPVMAAASDSGIRLEY 321 Query: 170 QSGRNQYANSSSKK-------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + G N ++ L+I QV ++ IAEV +++G Q Sbjct: 322 EEGTNAVVMVGPDSELAAYRSIVEQLDIR-RAQVVVEAIIAEVSDSRAQELGVQWLFADE 380 Query: 223 SSGPSKSFAADFGGK--------------------FVSEGGDFSVKGVLDRFSFETVLHA 262 G G + G + F+F +++A Sbjct: 381 KFGAGIVNFGSNGVNIANIAGAAASGDNEALGDLLSATTGVTAGIGHFGGGFNFAMLINA 440 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHF 318 L+ + L+ PTL + AS G + + T S + ++ + GV L Sbjct: 441 LKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRI 500 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + + L I EVS A D+ R+ T V + G ++L GL+ D++ Sbjct: 501 KPQINIDNSVRLDIVQEVSSIADSSAASDV-ITNKREIKTKVMVEDNGLVILGGLISDEL 559 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +P L IP LG LFR+ + + + P +++ Sbjct: 560 STSDQRVPFLGDIPGLGRLFRSEASKNTKQNLMVFIRPRILR 601 >gi|309389127|gb|ADO77007.1| type II and III secretion system protein [Halanaerobium praevalens DSM 2228] Length = 629 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 125/328 (38%), Gaps = 43/328 (13%) Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + + D + + +F + + V ++++G Sbjct: 247 YDQSLEPETRNIRVDYVDTEQISEIVGKFYPEIKLHVNAKRKEIIING------------ 294 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + ++++N +N QV ++ + E+ D +++G H Sbjct: 295 ------------AKNKLDGVEELINEINKPQY-QVVIETRVEEISSDFSRELGIDH---- 337 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + + + S K +S+ V AL+ +T +TLA P L ++ Sbjct: 338 -----TDGGIFNIIKESTNNADGESYKIEKLDYSWPDVFKALDTSTDTKTLASPKLMTLN 392 Query: 282 GQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS- 337 G+ A+ + + YK V++ + TS + GV L FTP + I L I VS Sbjct: 393 GEEANLSILEEKPYKVVNTDSNGEKTTSWEYAEAGVELTFTPWISKNNEIELEIAPTVSS 452 Query: 338 -----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + G P+ + R +TT+ L T + GL++ D + IPLL +P Sbjct: 453 FSEIADSQTGEGESPPPAKKSRSVETTLRLKDNETFAVGGLIQTDKEGKITKIPLLGDLP 512 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420 + G LF+ + E+ I TP ++K Sbjct: 513 LFGELFKFREPSDSTNELIIFVTPHIIK 540 >gi|296123515|ref|YP_003631293.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] gi|296015855|gb|ADG69094.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] Length = 915 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 69/340 (20%), Positives = 131/340 (38%), Gaps = 22/340 (6%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 K + + ++ L+ ++ + + +V + S + V G+ D+ L Sbjct: 429 ASRKVLTKIYQPNYINVKELQQLVQPILTPTLGKVSITSPSSV--GIAENATDAG-GDSL 485 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS- 222 S+ + + +V+ ++I QV + I V+ G ++ G Sbjct: 486 SQRDALLVQDYEEVINEIDRVIIEMDIP-PLQVIIDAKILSVKLTDDMAFGVNLALLGGD 544 Query: 223 ------SSGPSKSFAADFGGKFVS--------EGGDFSVKGVLDRFSFETVLHALERATA 268 +G S + ++ F G S +K + ALE Sbjct: 545 KNLAVTGNGASIATSSGFPGGTGSIIPPGAQFLANTAGLKYGFIAGDITGFIRALESIAD 604 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P + A++ Q A G + YKT +S+ +V + G L P + G Sbjct: 605 TSLVASPQIRALNKQRAEMIIGNRLSYKTLAFNSTQTIENVNFLESGTKLIIRPFIAPDG 664 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + + + E S VI + +P + T V + G T+V+ GL+ ++ + + +P Sbjct: 665 LVRMEVHPERSRAVINQST-GLPDQDTTEVTTNVMVRDGQTVVIGGLISEESTESIDRVP 723 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +L IP++GA FRN E TE+ + TP +V A Sbjct: 724 VLGAIPLVGAAFRNKSSRIERTELIVLITPRIVDEFAAAA 763 >gi|170694279|ref|ZP_02885433.1| general secretion pathway protein D [Burkholderia graminis C4D1M] gi|170140702|gb|EDT08876.1| general secretion pathway protein D [Burkholderia graminis C4D1M] Length = 781 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 101/275 (36%), Gaps = 40/275 (14%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 V++ L+ QV ++ I E+ + +G Q + +S + A ++ Sbjct: 400 VIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQVANNSIFAGTNLATGSSNSIINLTA 458 Query: 244 DFS---------------------------VKGVLDRFSFETVLHALERATAIRTLAEPT 276 + + + +L AL + L+ P Sbjct: 459 AAAAAGAAGATGGLANALGSGVQQGLNVGWIHNMFGVQGLGALLQALSQTADANVLSTPN 518 Query: 277 LTAISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G +T S S + D G+ LH P + G + Sbjct: 519 LITLDNEEAKIVVGTNIPIQTGSYSNLTSGNASSAFNTYDRVDVGLTLHVKPQITDGGIL 578 Query: 329 GLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L++ TE S V G P + R +TV +G IVL GL++D+ Q Sbjct: 579 KLQLYTEDSAIVNGTTNATTNPAGPQFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSK 638 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP +G LFR+ + NR +T + + P ++ Sbjct: 639 VPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVII 673 >gi|319761560|ref|YP_004125497.1| type iv pilus secretin pilq [Alicycliphilus denitrificans BC] gi|330823429|ref|YP_004386732.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601] gi|317116121|gb|ADU98609.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans BC] gi|329308801|gb|AEB83216.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601] Length = 713 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 109/302 (36%), Gaps = 42/302 (13%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE-DQVTLKVTIAEVRRDILKQIGF 215 S+R ++E +Q + LL + QV ++ I E R + +G Sbjct: 408 SERGSAIAEPRTNQLFVTDTPAKLEEVRKLLLTLDVPVRQVMIEARIVEARDTFGRSLGV 467 Query: 216 Q-------------------------HSITGSSSGPSKSFA--ADFGGKFVSEGGDFSVK 248 + S++ S F + GG FV+ S Sbjct: 468 RLGGGDLRANRGGDGGYSIGGGNRAAWGTNYSNATNSAGFGDAVNVGGNFVNLPASLSNV 527 Query: 249 GVLDRFSFE-----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + F+ L A+E + ++ P L A G ++ Y Sbjct: 528 TGVGSFALSIFNSAANRFLTLELSAMEADGQGKVVSSPRLITADQTKALIEQGTEYPYSV 587 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + GAT++ + L P + G I L +V++ G + + + Sbjct: 588 TAP-NGATTIAFKKAVLKLEVVPQITPEGNIILD--LDVNKDSRGESTTQGVAIDTKHIK 644 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V + +GGT+V+ G+ + + + IPLL +P++G LF++ + E+ + TP Sbjct: 645 TQVLVENGGTVVIGGIFELEETNQENKIPLLGDVPVMGNLFKSRTKESSKREMLVFITPK 704 Query: 418 LV 419 ++ Sbjct: 705 VI 706 >gi|167736415|ref|ZP_02409189.1| general secretion pathway protein D [Burkholderia pseudomallei 14] gi|167813490|ref|ZP_02445170.1| general secretion pathway protein D [Burkholderia pseudomallei 91] gi|167892116|ref|ZP_02479518.1| general secretion pathway protein D [Burkholderia pseudomallei 7894] Length = 742 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + + + V++ L+ QV ++ + E++ +G Q + Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423 Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255 +G S G + GG G + Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308 +L ++ L+ P L + + A G T S S + T Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543 Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363 D G+ LH P + G + L++ TE S V G N P++ R +TV Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659 >gi|260550835|ref|ZP_05825042.1| type II secretory pathway [Acinetobacter sp. RUH2624] gi|260406145|gb|EEW99630.1| type II secretory pathway [Acinetobacter sp. RUH2624] Length = 721 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 99/272 (36%), Gaps = 37/272 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 K+++LL++ + QV ++ I K++G + I +K+ Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVGGSETTLWNL 502 Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 G G + F + L AL+ Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P + Q+A +G Q Y+T ++S + + D + L+ TP++ G+ Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQTTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I +++ G +T V + +G T++L G+ + + +P Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTTNSQTKVPF 681 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFR + ++ E+ I TP +V Sbjct: 682 FGDIPVVGHLFRKDVKSDDKQELLIFVTPRIV 713 >gi|327483259|gb|AEA77666.1| MSHA biogenesis protein MshL [Vibrio cholerae LMA3894-4] Length = 559 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 95/263 (36%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235 QV L+ I EV Q G S SS+G + + G Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPG 332 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344 T SS + ++T G+ L TP + G + L + V E Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452 Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535 >gi|167571519|ref|ZP_02364393.1| type II/III secretion system protein [Burkholderia oklahomensis C6786] Length = 555 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 33/295 (11%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQV 196 + L Q ++ + + NLL + QV Sbjct: 261 ARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRLVQVADLIGKLDTPSRQV 320 Query: 197 TLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEGGD 244 ++ I E R + +G + + +G A G F + Sbjct: 321 LIEARIVEGDRGFSRNLGARLALRAPDAGDRATGVVAGRNGTLADLTARPIGGFDAATAG 380 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ + L ALE + ++ P + A G + Y+ G Sbjct: 381 LTLFAARASRLLDVELSALESEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGV 439 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P + GR+ L + ++++ +G P+ + T VE+ + Sbjct: 440 SGVQFRRATLKLEVEPQITPDGRVILDL--DIAKDSVGEETASGPAIHTKHVQTRVEVEN 497 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 498 GGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRALRAQRSELVVYITPTVV 552 >gi|330958318|gb|EGH58578.1| general secretion pathway protein D [Pseudomonas syringae pv. maculicola str. ES4326] Length = 784 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 106/292 (36%), Gaps = 26/292 (8%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + T + + ++V++ L+ QV ++ I EV D Q G Q Sbjct: 432 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDASQFGVQWQ 490 Query: 219 ITGSSSGPSKSFAADF-----------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261 S G G ++ G+ + + + Sbjct: 491 TGNLSGNGGFGGVNLGGSGLNSNGGTSIDVLPQGLNVGVVRGAVTIPGIGEVLDLKVLAR 550 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + ++AS G + T +S+ +V + G Sbjct: 551 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 610 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 611 LKLNVRPQISEGGTVKLDIYQEVSSVDQRASLEAGTVTNKRAIDTSILLDDGQIMVLGGL 670 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 L+D Q +P LS IP+LG LFRN + +T + + P++++ Sbjct: 671 LQDGYNQSNNAVPWLSNIPLLGVLFRNEARSTSKTNLMVFLRPYIIRDSGAG 722 >gi|296157578|ref|ZP_06840413.1| general secretion pathway protein D [Burkholderia sp. Ch1-1] gi|295892350|gb|EFG72133.1| general secretion pathway protein D [Burkholderia sp. Ch1-1] Length = 789 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 42/309 (13%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 Q + T + + + V++ L+ QV L+ I E+ + Sbjct: 364 DDNQAGGMIQADAATNSLIVTAAEPVYRNLRAVIDQLDAR-RAQVYLEALIVELNSNTSG 422 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------------------------- 246 +G Q + +S + V+ Sbjct: 423 NLGIQWQVANNSIFAGTNLQTGSSNSIVNLTAGAVAAGAAGAATGGLASAIGTQGLQQGL 482 Query: 247 ----VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + + +L AL + L+ P L + + A G +T S S Sbjct: 483 NIGWIHNIFGVQGLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSN 542 Query: 303 --------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PS 350 + D G+ LH P + G + L++ TE S V G P Sbjct: 543 LTSSTATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTTNATTNPAGPE 602 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R +TV +G IVL GL++D+ Q +PLL IP +G LFR+ + R +T + Sbjct: 603 FTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNL 662 Query: 411 FIAATPFLV 419 + P ++ Sbjct: 663 MVFLRPVII 671 >gi|148254077|ref|YP_001238662.1| putative general secretion pathway protein D [Bradyrhizobium sp. BTAi1] gi|146406250|gb|ABQ34756.1| Putative general secretion pathway protein D [Bradyrhizobium sp. BTAi1] Length = 780 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 66/297 (22%), Positives = 116/297 (39%), Gaps = 32/297 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + QV + TIAEV + G Q +T + G + S + Sbjct: 492 RPQLQVAIDATIAEVTLNDNLNYGVQAYLTSKNLGLRPDQGSLLNTTSTSAPATVASAAG 551 Query: 251 LDRFSF------------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 +F +L AL T ++ L+ P+L I Q+A+ G Q Sbjct: 552 TITNAFLNRAFPGFNFLIGSESQPSAILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQ 611 Query: 293 HLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S++ T ++ + G++L P V G + L I+ E+S Sbjct: 612 VPVSTGSATVLTTNNTVVNTIDYRNTGIILRVAPRVNENGNVRLEIEQEISNVSPQTANS 671 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P+ RK + V + SG T++LAGL+ + Q + G+P + +IP+LG LF N+ R Sbjct: 672 LTPTVAQRKVKSAVAVASGQTVLLAGLISETHQGTRNGVPGVDQIPVLGDLFSNNDRTRG 731 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 TE+ I P +++ D + V ++ ++ + + G+ Sbjct: 732 RTELIIFIRPQIIRDG--------TDAHYVAEELRSKLRGTIRPVSTSALQPPRAGR 780 >gi|167032058|ref|YP_001667289.1| general secretion pathway protein D [Pseudomonas putida GB-1] gi|166858546|gb|ABY96953.1| general secretion pathway protein D [Pseudomonas putida GB-1] Length = 584 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 26/295 (8%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 MV + S R T ++ + ++ L+I QV ++ IAEV Sbjct: 243 MVASAGPSIRLEYEEGTNAVVMVGPDSELAAYRAIVEQLDIR-RAQVVVEAIIAEVSDSS 301 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVKG 249 +++G Q G G + G + Sbjct: 302 AQELGVQWLFADEKFGAGIVNFGSNGVNIANIAGAAASGDNEALGDLLSTTAGATAGIGH 361 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305 F+F +++AL+ + L+ PTL + AS G + + T S + Sbjct: 362 FGGGFNFAMLVNALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQ 421 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 ++ + GV L P + + L I EVS A D+ R+ T V + Sbjct: 422 TIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIADSSAASDV-ITNKREIKTKVMVEDN 480 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G ++L GL+ D++ + +PLL IP LG LFR+ + + + P +++ Sbjct: 481 GLVILGGLISDELSTSNQRVPLLGDIPYLGRLFRSDASKNTKQNLMVFIRPRILR 535 >gi|120609611|ref|YP_969289.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1] gi|120588075|gb|ABM31515.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1] Length = 810 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 98/277 (35%), Gaps = 41/277 (14%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-- 248 QV ++ I EV + + G Q + G ++ Sbjct: 441 GRRAQVLVESLIVEVAANKVADFGIQWQGVMGNYGNGTIGVIGTNSTASGGANILNLALA 500 Query: 249 ------------------------------GVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + + + LE L+ P L Sbjct: 501 AASGSVSGVTSALSASGARPGNGLNVAIAPRINGNYYLGALANFLENTGDANVLSTPNLL 560 Query: 279 AISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + A G + T S + T+V D G++L P + G + L Sbjct: 561 TLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVGLMLRVRPQISENGTVKL 620 Query: 331 RIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + EVS+ NA + P+ R ++TV + G IVL GLL+D ++ +PL+ Sbjct: 621 SLYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGSVIVLGGLLEDRYSMGQDKVPLMG 680 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +P++G LFRN R++T + + P +++ A D Sbjct: 681 DLPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSD 717 >gi|167843644|ref|ZP_02469152.1| general secretion pathway protein D [Burkholderia pseudomallei B7210] Length = 743 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + + + V++ L+ QV ++ + E++ +G Q + Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423 Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255 +G S G + GG G + Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308 +L ++ L+ P L + + A G T S S + T Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543 Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363 D G+ LH P + G + L++ TE S V G N P++ R +TV Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659 >gi|332527680|ref|ZP_08403723.1| general secretion pathway protein D [Rubrivivax benzoatilyticus JA2] gi|332112080|gb|EGJ12056.1| general secretion pathway protein D [Rubrivivax benzoatilyticus JA2] Length = 388 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 100/277 (36%), Gaps = 35/277 (12%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------------PSKSF 230 QV ++ I EV D + GFQ G + Sbjct: 51 RRAQVYIESLIVEVAGDNAAEFGFQWQGLIGKDGDKTGLFGGTNFSNNNGSGNILNITTA 110 Query: 231 AADFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AA VS G +V + ++ + + L+ T ++ P L + + A Sbjct: 111 AASGSASGVSLGEGLNVGILRRYGGTYALGALANLLQSQTKTNIVSTPNLITLDNEEAKI 170 Query: 288 TSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 G + T + T ++ D G+ L P + G + + I E S + Sbjct: 171 VVGENVPFITGQYTNTGTATTSPFQTIERKDVGITLRIRPQIGESGTVRMTIYQEQSSVL 230 Query: 341 IGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G PS R ++ V + G IVL GL++D + K +PLL IP LGAL Sbjct: 231 STATVGTTNAGPSTTKRSIESQVVVEDGQIIVLGGLVQDSYVEEKSKVPLLGDIPGLGAL 290 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 FR+ ++ T + + P +++ + D Y Sbjct: 291 FRSESRTKKRTNLMVFLRPVVMRDAD-STVRLSLDRY 326 >gi|303231123|ref|ZP_07317863.1| bacterial type II and III secretion system protein [Veillonella atypica ACS-049-V-Sch6] gi|302514254|gb|EFL56256.1| bacterial type II and III secretion system protein [Veillonella atypica ACS-049-V-Sch6] Length = 399 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 73/326 (22%), Positives = 127/326 (38%), Gaps = 36/326 (11%) Query: 99 VILIGHDGKQMLNLDILIERDIAH---LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 V + G G + +++E +A LE ++ + + V ++ +VL Sbjct: 105 VTVKGDSGTKEHRHVVVVEPKVASSTSLESVIKTVVPNGKFAVHKETNQIVL-------- 156 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 ++ ++ QV L+ TI + K+ GF Sbjct: 157 ----------------NVTGDEEKGVNSIIQSVD-RDMKQVRLEATIMAMEHSYTKETGF 199 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + S D + + + +F + L LE + +A P Sbjct: 200 RWS-----WLSLTGHGNDKTNSYGAITFGKAPDREAYKFFVKPELSLLETSGKAVVIATP 254 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 ++ A++G++A G + S S G + + G+ L +TP V G I I+ Sbjct: 255 SIVALNGEAAHILIGERIPVIEESISNGERKRSIHYEEVGIKLDYTPIVTKNGAIDTSIR 314 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 EVS P I V+ R+A T V L G +V+ GL+ + Q+ E IP+L IP+ Sbjct: 315 AEVSSP-IMVSELKSYKITTRQAQTRVRLQPGEVLVIGGLMDNRDQKQIEKIPVLGDIPL 373 Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419 LG LFR+SR ++ E+ I +V Sbjct: 374 LGKLFRHSRKTKDSVEMVIFVKATVV 399 >gi|15640429|ref|NP_230056.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587598|ref|ZP_01677363.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80] gi|121727263|ref|ZP_01680422.1| MSHA biogenesis protein MshL [Vibrio cholerae V52] gi|147674773|ref|YP_001218670.1| MSHA biogenesis protein MshL [Vibrio cholerae O395] gi|153802215|ref|ZP_01956801.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3] gi|153818263|ref|ZP_01970930.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457] gi|153822274|ref|ZP_01974941.1| MSHA biogenesis protein MshL [Vibrio cholerae B33] gi|227080613|ref|YP_002809164.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2] gi|229507042|ref|ZP_04396548.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286] gi|229508803|ref|ZP_04398295.1| MSHA biogenesis protein MshL [Vibrio cholerae B33] gi|229519791|ref|ZP_04409234.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9] gi|229606316|ref|YP_002876964.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236] gi|254226017|ref|ZP_04919617.1| MSHA biogenesis protein MshL [Vibrio cholerae V51] gi|254850634|ref|ZP_05239984.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10] gi|255743787|ref|ZP_05417744.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101] gi|262153600|ref|ZP_06028728.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1] gi|262167634|ref|ZP_06035338.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27] gi|298501065|ref|ZP_07010866.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757] gi|9654823|gb|AAF93575.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548171|gb|EAX58243.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80] gi|121630382|gb|EAX62777.1| MSHA biogenesis protein MshL [Vibrio cholerae V52] gi|124122239|gb|EAY40982.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3] gi|125621473|gb|EAZ49807.1| MSHA biogenesis protein MshL [Vibrio cholerae V51] gi|126511222|gb|EAZ73816.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457] gi|126520230|gb|EAZ77453.1| MSHA biogenesis protein MshL [Vibrio cholerae B33] gi|146316656|gb|ABQ21195.1| MSHA biogenesis protein MshL [Vibrio cholerae O395] gi|227008501|gb|ACP04713.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2] gi|227012257|gb|ACP08467.1| MSHA biogenesis protein MshL [Vibrio cholerae O395] gi|229344480|gb|EEO09455.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9] gi|229354206|gb|EEO19137.1| MSHA biogenesis protein MshL [Vibrio cholerae B33] gi|229355787|gb|EEO20707.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286] gi|229368971|gb|ACQ59394.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236] gi|254846339|gb|EET24753.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10] gi|255738536|gb|EET93924.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101] gi|262023970|gb|EEY42667.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27] gi|262030627|gb|EEY49263.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1] gi|297540313|gb|EFH76373.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757] Length = 559 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 95/263 (36%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235 QV L+ I EV Q G S SS+G + + G Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPG 332 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344 T SS + ++T G+ L TP + G + L + V E Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452 Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535 >gi|186474451|ref|YP_001863422.1| general secretion pathway protein D [Burkholderia phymatum STM815] gi|184198410|gb|ACC76372.1| general secretion pathway protein D [Burkholderia phymatum STM815] Length = 717 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 60/314 (19%), Positives = 104/314 (33%), Gaps = 44/314 (14%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G Q + T + + + V++ L+ QV ++ I E+ Sbjct: 341 GSNEENQPGGMIQADAATNSLIITASDPVYRNLRSVIDQLDSR-RAQVYIEALIVELSAT 399 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG------------------- 249 +G Q S+G + G ++ Sbjct: 400 SSANLGIQWQGALLSNGGNNGLYGSSNFNSNGSQGIVNLTAQGAIIANNPAAALATTGTN 459 Query: 250 -------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + F +L AL +++ L+ P L + + A G Sbjct: 460 LLNNGLNVGLLHRFGNVFGLGGLLQALSQSSDANILSTPNLITLDNEEAKIVVGSNVPVV 519 Query: 297 TVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNA 345 T S +T + D G+VLH P + G I L+I +E S N Sbjct: 520 TGSYATPTANAATSVTAFNTFDRQDVGIVLHVKPQITDGGIIKLQIYSEDSSVDPTSTNN 579 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + R +TV G IVL GL++D+ +PLL +P +G LFR+ +R Sbjct: 580 PGGVTIIKRSVQSTVLSDDGEIIVLGGLMQDNYSNGNSKVPLLGDVPWIGQLFRSEEKSR 639 Query: 406 EETEIFIAATPFLV 419 +T + + P ++ Sbjct: 640 TKTNLMVFLRPVII 653 >gi|126643202|ref|YP_001086186.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii ATCC 17978] Length = 695 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 K+++LL++ + QV ++ I K++G + I + + Sbjct: 418 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 476 Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 G G + F + L AL+ Sbjct: 477 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 536 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+ Sbjct: 537 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 596 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I +++ G +T V + +G T++L G+ + + +P Sbjct: 597 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 655 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFR + ++ E+ I TP +V Sbjct: 656 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 687 >gi|121607671|ref|YP_995478.1| general secretion pathway protein D [Verminephrobacter eiseniae EF01-2] gi|121552311|gb|ABM56460.1| general secretion pathway protein D [Verminephrobacter eiseniae EF01-2] Length = 720 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 12/240 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-------F 245 QV ++ +I EV + + G Q + S SG + A S GG F Sbjct: 447 PTQVLIEASIIEVTLNDDLRYGLQWAFNDSRSGIDRGQGALSSRDGTSTGGILGGALAGF 506 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302 S + +L+ L T ++ +A P+L + +AS G Q + ++S Sbjct: 507 SYALKSPAGAVRAMLNVLSAKTTVKVVASPSLMVLDNHTASIAVGDQTPIQAGTTSNLEG 566 Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 +T++ D GV L TP+V + + ++I V++ + ++ R+ + V Sbjct: 567 TVTSTNIEYKDTGVNLVVTPSVNAGNIVTMQIDQSVTDVGAKDEVTNQRAFLQRQLSSKV 626 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + SG +IV+ GL+++ K GIP+L +P+ G LF + + TE+ + TP +V+ Sbjct: 627 SVRSGESIVMGGLIQESSSSTKSGIPVLHALPLFGNLFGTTVNDGRRTELLVIITPRVVR 686 >gi|149194260|ref|ZP_01871357.1| putative type II protein secretion system D protein [Caminibacter mediatlanticus TB-2] gi|149135435|gb|EDM23914.1| putative type II protein secretion system D protein [Caminibacter mediatlanticus TB-2] Length = 450 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 96/262 (36%), Gaps = 20/262 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + + K MN L + +V + V I V + G S S S + Sbjct: 178 TGDMKQIKAVDKFMNNLLNSLTKEVLIDVKIYSVELSKSHKTGIDWSQLSLSLPNS---S 234 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 K++ G + +F L+ L + + +++ P + ++ Q A + G Sbjct: 235 VPLRAKYIFGSGSIFNSATFNSAAF---LNFLAQNGNVNSISNPKIMTLNNQKAIISVGD 291 Query: 292 QHLYKT----VSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS------ 337 YK V+ G GV+L TP + G I L I +S Sbjct: 292 TIYYKYASKVVTDQNGNPQTQYTIGNKFVGVILDITPQISDDGTIILSIAPRISAFRDLN 351 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + P + + V++ TIVL GL+ DD G+P+L +IPI+ L Sbjct: 352 QLSTQTVRDMPPDTKDNTMLSVVKVKDNDTIVLGGLISDDKSLKVNGVPILKEIPIVKYL 411 Query: 398 FRNSRFNREETEIFIAATPFLV 419 F + + E+ TP ++ Sbjct: 412 FSSKERITNKKELVFVITPHII 433 >gi|221069105|ref|ZP_03545210.1| general secretion pathway protein D [Comamonas testosteroni KF-1] gi|220714128|gb|EED69496.1| general secretion pathway protein D [Comamonas testosteroni KF-1] Length = 793 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 66/327 (20%), Positives = 115/327 (35%), Gaps = 43/327 (13%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G + T + V++ L+ QV ++ I EV D Sbjct: 387 GTAQQPSTGGMIQADPTTNSLIITAPGPLYRQLRTVIDKLD-GRRAQVLIEALIVEVSAD 445 Query: 209 ILKQIGFQHS--------------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 Q+G Q S + G S + G +++ ++ Sbjct: 446 KAAQLGVQWSSVIRNNGRVLGVLGNGTSISGISNIFGLSGAVGNLVNGTPLTDSQASAIG 505 Query: 249 G-----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G V S +++ ++ L+ P L + + AS G + T Sbjct: 506 GMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTNILSTPNLMTLDNEEASIMVGENVPFPT 565 Query: 298 VSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347 S + T+ D G +L P + G I + + E S G NA Sbjct: 566 GSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQINENGTIKMAVYQENSAVKQGTANAQS 625 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + R ++ V + G +VL GL+ D+ Q +E +PLL IP+LG LFRN+ R++ Sbjct: 626 GATTTKRSIESNVLVEDGAIVVLGGLIADEYSQSQERVPLLGDIPLLGNLFRNTSRARKK 685 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHY 434 T + + P +++ + D Y Sbjct: 686 TNLMVFLRPTVLRDASSTS-QLSQDRY 711 >gi|76811977|ref|YP_331636.1| general secretion pathway protein D [Burkholderia pseudomallei 1710b] gi|167822031|ref|ZP_02453502.1| general secretion pathway protein D [Burkholderia pseudomallei 9] gi|167900627|ref|ZP_02487832.1| general secretion pathway protein D [Burkholderia pseudomallei NCTC 13177] gi|167921121|ref|ZP_02508212.1| general secretion pathway protein D [Burkholderia pseudomallei BCC215] gi|254194560|ref|ZP_04900991.1| general secretion pathway protein D [Burkholderia pseudomallei S13] gi|76581430|gb|ABA50905.1| general secretion pathway protein D [Burkholderia pseudomallei 1710b] gi|169651310|gb|EDS84003.1| general secretion pathway protein D [Burkholderia pseudomallei S13] Length = 750 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + + + V++ L+ QV ++ + E++ +G Q + Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423 Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255 +G S G + GG G + Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308 +L ++ L+ P L + + A G T S S + T Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543 Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363 D G+ LH P + G + L++ TE S V G N P++ R +TV Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659 >gi|167582578|ref|ZP_02375452.1| type II/III secretion system protein [Burkholderia thailandensis TXDOH] Length = 580 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 33/295 (11%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQV 196 + L +Q ++ + + NLL + QV Sbjct: 286 ARAADVQRLLAGSAAQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQV 345 Query: 197 TLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEGGD 244 ++ I E R + +G + + +G A F + Sbjct: 346 LIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGFDAATAG 405 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ + L ALE + ++ P + A G + Y+ G Sbjct: 406 LTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGV 464 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + V + L P + GR+ L + +V++ +G P+ + T VE+ + Sbjct: 465 SGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVEN 522 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 523 GGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 577 >gi|167908851|ref|ZP_02495942.1| general secretion pathway protein D [Burkholderia pseudomallei 112] Length = 745 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + + + V++ L+ QV ++ + E++ +G Q + Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423 Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255 +G S G + GG G + Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308 +L ++ L+ P L + + A G T S S + T Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543 Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363 D G+ LH P + G + L++ TE S V G N P++ R +TV Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659 >gi|126454161|ref|YP_001064292.1| general secretion pathway protein D [Burkholderia pseudomallei 1106a] gi|134281369|ref|ZP_01768077.1| general secretion pathway protein D [Burkholderia pseudomallei 305] gi|217423996|ref|ZP_03455496.1| general secretion pathway protein D [Burkholderia pseudomallei 576] gi|226193043|ref|ZP_03788653.1| general secretion pathway protein D [Burkholderia pseudomallei Pakistan 9] gi|237814399|ref|YP_002898850.1| general secretion pathway protein D [Burkholderia pseudomallei MSHR346] gi|254258553|ref|ZP_04949607.1| general secretion pathway protein D [Burkholderia pseudomallei 1710a] gi|126227803|gb|ABN91343.1| general secretion pathway protein D [Burkholderia pseudomallei 1106a] gi|134247036|gb|EBA47122.1| general secretion pathway protein D [Burkholderia pseudomallei 305] gi|163639391|gb|ABY28246.1| general secretion pathway protein D [Burkholderia pseudomallei] gi|217393059|gb|EEC33081.1| general secretion pathway protein D [Burkholderia pseudomallei 576] gi|225934643|gb|EEH30620.1| general secretion pathway protein D [Burkholderia pseudomallei Pakistan 9] gi|237506672|gb|ACQ98990.1| general secretion pathway protein D [Burkholderia pseudomallei MSHR346] gi|254217242|gb|EET06626.1| general secretion pathway protein D [Burkholderia pseudomallei 1710a] Length = 757 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + + + V++ L+ QV ++ + E++ +G Q + Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 430 Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255 +G S G + GG G + Sbjct: 431 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 490 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308 +L ++ L+ P L + + A G T S S + T Sbjct: 491 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 550 Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363 D G+ LH P + G + L++ TE S V G N P++ R +TV Sbjct: 551 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 610 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 611 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 666 >gi|315636411|ref|ZP_07891655.1| general secretion pathway protein D [Arcobacter butzleri JV22] gi|315479277|gb|EFU69966.1| general secretion pathway protein D [Arcobacter butzleri JV22] Length = 478 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 14/241 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------GG 243 + QV ++ I EV +++ +IG + I SS+ A S G Sbjct: 173 KAQVYVQAKIIEVNNELVNKIGISYGIINSSARSDGINAISSNLNGGSNAIKEAVDTLGI 232 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG----QHLYKTVS 299 + + + L+ L++ A+ ++EP++ AI + +S G + Sbjct: 233 RMNDLNIKSGLALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISSTLTD 292 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADT 358 T+ D G+ L P + S ++ L I T + V+AG P ++ T Sbjct: 293 GGLQRTNYEREDIGLTLKVKPRISSDTKLTLEINTLLEGIKSTSVSAGQNPDTLKKEIKT 352 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G ++++ GL+++ + +++ +P+L IP+ G LF+N ++ + I TP++ Sbjct: 353 AAILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVIIVTPYM 412 Query: 419 V 419 + Sbjct: 413 I 413 >gi|4139236|gb|AAD05173.1| general secretory pathway protein D [Burkholderia pseudomallei 1026b] Length = 750 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + + + V++ L+ QV ++ + E++ +G Q + Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423 Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255 +G S G + GG G + Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308 +L ++ L+ P L + + A G T S S + T Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543 Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363 D G+ LH P + G + L++ TE S V G N P++ R +TV Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659 >gi|53717646|ref|YP_106632.1| general secretory pathway protein D [Burkholderia pseudomallei K96243] gi|52208060|emb|CAH33990.1| general secretory pathway protein D [Burkholderia pseudomallei K96243] Length = 757 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + + + V++ L+ QV ++ + E++ +G Q + Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 430 Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255 +G S G + GG G + Sbjct: 431 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 490 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308 +L ++ L+ P L + + A G T S S + T Sbjct: 491 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 550 Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363 D G+ LH P + G + L++ TE S V G N P++ R +TV Sbjct: 551 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 610 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 611 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 666 >gi|153834019|ref|ZP_01986686.1| msha biogenesis protein mshl [Vibrio harveyi HY01] gi|148869663|gb|EDL68649.1| msha biogenesis protein mshl [Vibrio harveyi HY01] Length = 544 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 112/303 (36%), Gaps = 29/303 (9%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202 +L V + S + + T + + ++V L + + QV L+ I Sbjct: 218 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDEIREVREFLGVSQERMQRQVILEAKI 277 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VLDRFSFE 257 EV Q G S +S G S S D + ++ G +F+ Sbjct: 278 LEVTLSDGYQQGINWSNMSASIGNSGSIVVDRNPAKLPLDAIGTLLGGQTNVTFSDGNFK 337 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSV 307 V++ + + L+ P +TA + Q + G + T SS + Sbjct: 338 AVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVEL 397 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKA 356 T G+ L TP + + G + L + V E + ++ +R++ Sbjct: 398 TPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQLNLGGDFQNIQLPLAKSSIRES 457 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 D+ + G +V+ GL+K + +P L +P LG LFRN ++TE+ I P Sbjct: 458 DSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNVTQKTELVILLKP 517 Query: 417 FLV 419 +V Sbjct: 518 TVV 520 >gi|126441466|ref|YP_001057062.1| general secretion pathway protein D [Burkholderia pseudomallei 668] gi|126220959|gb|ABN84465.1| general secretion pathway protein D [Burkholderia pseudomallei 668] Length = 757 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 58/296 (19%), Positives = 106/296 (35%), Gaps = 37/296 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + + + V++ L+ QV ++ + E++ +G Q + Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 430 Query: 220 TGSSSGPSKSFAAD-----------FGGKFVSEGGDFSVKGVLDRF-------------S 255 ++ + G + GG G + Sbjct: 431 ANNALYAGTNLVTGQTNLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 490 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308 +L ++ L+ P L + + A G T S S + T Sbjct: 491 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 550 Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363 D G+ LH P + G + L++ TE S V G N P++ R +TV Sbjct: 551 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 610 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 611 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 666 >gi|193078561|gb|ABO13584.2| putative outer membrane protein (ComQ) [Acinetobacter baumannii ATCC 17978] Length = 721 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 K+++LL++ + QV ++ I K++G + I + + Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502 Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 G G + F + L AL+ Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+ Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I +++ G +T V + +G T++L G+ + + +P Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 681 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFR + ++ E+ I TP +V Sbjct: 682 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 713 >gi|114321906|ref|YP_743589.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1] gi|114228300|gb|ABI58099.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1] Length = 694 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 100/255 (39%), Gaps = 21/255 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++N L+I QV ++ I D + +G + T + S S+ A Sbjct: 434 NLVNRLDIP-VQQVLIESRIVIADDDFSRDLGVRFGYTATGSLGSEGTAIGARPTPTPGI 492 Query: 243 GD-----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 G + + L A+E ++ P + + + A Sbjct: 493 DGTDDLMVDLPAPAEAPRLGLAIGRIGDRLLQLELSAMETEGRGEVISSPRVITANQREA 552 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 + G + Y+ +++GAT+V + + L TP + R+ + EVS +G Sbjct: 553 NIRQGVEIPYQEE-TASGATNVEFKEAVLGLTVTPQITPDDRVIM--NLEVSNDTVGEVF 609 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +PS + T V + +G T+VL G+ + + +P +P +G LFRN Sbjct: 610 AGVPSIDTQSVTTQVLVDNGETVVLGGVYERASGEQTRRVPFFGSLPGVGWLFRNRLTFD 669 Query: 406 EETEIFIAATPFLVK 420 E++E+ + TP ++ Sbjct: 670 EQSELLVFVTPRILD 684 >gi|299529584|ref|ZP_07043021.1| general secretion pathway protein D [Comamonas testosteroni S44] gi|298722447|gb|EFI63367.1| general secretion pathway protein D [Comamonas testosteroni S44] Length = 750 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 66/327 (20%), Positives = 114/327 (34%), Gaps = 43/327 (13%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G + T + V++ L+ QV ++ I EV D Sbjct: 344 GTAQQPSTGGMIQADPTTNSLIITAPGPLYRQLRTVIDKLD-GRRAQVLIEALIVEVSAD 402 Query: 209 ILKQIGFQHS--------------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 Q+G Q S + G S + G +++ ++ Sbjct: 403 KAAQLGVQWSSVIRNNGRVLGVLGNGTSISGISNIFGLSGAVGNLVNGTPLTDSQASAIG 462 Query: 249 G-----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G V S +++ ++ L+ P L + + AS G + T Sbjct: 463 GMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTNILSTPNLMTLDNEEASIMVGENVPFPT 522 Query: 298 VSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347 S + T+ D G +L P + G I + + E S G NA Sbjct: 523 GSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQINENGTIKMAVYQENSAVKQGTANAQS 582 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + R ++ V + G +VL GL+ D+ Q +E +PLL IP+LG LFRN+ R++ Sbjct: 583 GATTTKRSIESNVLVEDGAIVVLGGLIADEYSQSQERVPLLGDIPLLGNLFRNTSRERKK 642 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHY 434 T + + P +++ D Y Sbjct: 643 TNLMVFLRPTVLRDANSTS-QLSQDRY 668 >gi|91785777|ref|YP_560983.1| putative general secretory pathway protein D [Burkholderia xenovorans LB400] gi|91689731|gb|ABE32931.1| Putative general secretory pathway protein D [Burkholderia xenovorans LB400] Length = 814 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 42/309 (13%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 Q + T + + + V++ L+ QV L+ I E+ + Sbjct: 389 DDNQAGGMIQADAATNSLIVTAAEPVYRNLRAVIDQLDAR-RAQVYLEALIVELNSNTSG 447 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------------------------- 246 +G Q + +S + V+ Sbjct: 448 NLGIQWQVANNSIFAGTNLQTGSSNSIVNLTAGAIAAGAAGAATGGLASAIGTQGLQQGL 507 Query: 247 ----VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + + +L AL + L+ P L + + A G +T S S Sbjct: 508 NIGWIHNIFGVQGLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSN 567 Query: 303 --------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PS 350 + D G+ LH P + G + L++ TE S V G P Sbjct: 568 LTSSTATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTTNATTNPAGPE 627 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R +TV +G IVL GL++D+ Q +PLL IP +G LFR+ + R +T + Sbjct: 628 FTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNL 687 Query: 411 FIAATPFLV 419 + P ++ Sbjct: 688 MVFLRPVII 696 >gi|149174476|ref|ZP_01853102.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris DSM 8797] gi|148846586|gb|EDL60923.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris DSM 8797] Length = 799 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 78/418 (18%), Positives = 155/418 (37%), Gaps = 35/418 (8%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 A I +G+ ++I + + + ++++V + D ++ S L + Sbjct: 286 QDAEIMQVLDMLGELSGLNILTGQGVTGTISANLKNVTPAQA--LDAILRSRD---LTSE 340 Query: 93 NVG-------QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 G QA + L ++++ A L I N+ + ++ Sbjct: 341 KEGEFIYVMTQAQLELKKKSSRKVITKLYSPFYISAKELQNLITPILTENVGIVSLTSPS 400 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 + G+ + ++T +++ ++I QV ++ I V Sbjct: 401 EV-GIAPDPTSAG-GDSFAQTDSILVRDYPEILEEVDRLLEKMDIP-PMQVVIEAMILSV 457 Query: 206 RRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGGDF-----SVK 248 + + G ++ G ++ + F V G F +K Sbjct: 458 ALNDDMKFGVNFAMLGGNNKNLVVDGNGNTLNNASGFPGSGSSSIVPPTGQFIADVAGLK 517 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATS 306 + ALE T +A P L A++ Q A G + Y TV+ + T + Sbjct: 518 YGFLHGDISGFIEALEDVTETNLIASPQLRALNKQKAELIIGDRISYSTVTQNGNTSIQN 577 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V D G+VL+ P + G+I + + E S I + ++P R + T V + G Sbjct: 578 VNFLDSGIVLNLRPFITPDGQIRMEVHPERSSATINPST-NLPDLRTTEVTTNVMVRDGH 636 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 T+V+ GL+++ + +P L +P++G FR R TE+ + TP +V+ A Sbjct: 637 TVVIGGLIEERTSDTRNQVPFLGALPVIGNAFRQQREITNRTELIVLITPRIVRAEAA 694 >gi|326315788|ref|YP_004233460.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372624|gb|ADX44893.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC 19860] Length = 715 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 58/336 (17%), Positives = 120/336 (35%), Gaps = 50/336 (14%) Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIA 191 +++ ++ +++ G T S+R ++E +Q + ++++ L++A Sbjct: 383 ADMVAQLANNSTGSTGT-STRFLSERGSAIAEPRTNQLFVTDTPAKLEEVRQLLSTLDVA 441 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHS--------------------------------I 219 QV ++ I E R + +G + Sbjct: 442 VR-QVMIEARIVEARDTFGRSLGVRLGGADLRANRGGDGGYSVGGNNRLAIGTSYNNAVA 500 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-----------LHALERATA 268 + G + + G FV+ S F+ L A+E Sbjct: 501 SSGGGGTVATGSDAAGSTFVNLPAALSSGASFGNFALTLFNSAANRFLTLELSAMEADGQ 560 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + ++ P L A G ++ Y + GAT++ + L TP + G I Sbjct: 561 GKVVSSPRLITADQTKALIEQGTEYPYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGNI 619 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L + +V++ G + T V + +GGT+V+ G+ + + + IPLL Sbjct: 620 ILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEETNQENKIPLL 677 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 +P++G LF+N + E+ + TP ++ Sbjct: 678 GDVPVVGNLFKNRTRESTKREMLVFITPKVISDKGP 713 >gi|184159708|ref|YP_001848047.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii ACICU] gi|239501963|ref|ZP_04661273.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii AB900] gi|183211302|gb|ACC58700.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii ACICU] gi|322509621|gb|ADX05075.1| HofQ [Acinetobacter baumannii 1656-2] gi|323519639|gb|ADX94020.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii TCDC-AB0715] Length = 721 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 K+++LL++ + QV ++ I K++G + I + + Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502 Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 G G + F + L AL+ Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+ Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I +++ G +T V + +G T++L G+ + + +P Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 681 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFR + ++ E+ I TP +V Sbjct: 682 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 713 >gi|217969316|ref|YP_002354550.1| type II and III secretion system protein [Thauera sp. MZ1T] gi|217506643|gb|ACK53654.1| type II and III secretion system protein [Thauera sp. MZ1T] Length = 625 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 113/305 (37%), Gaps = 36/305 (11%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 A QV ++ TI EV + G + G PS S G S S Sbjct: 296 AARRQVMIEATIVEVTLADGYRQGIDWTRLGV---PSWSVRPRGSGDATSGQPTLSYL-- 350 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------ 304 + + L LE ++ L+ P L+ ++ Q+A + +Y V S+T Sbjct: 351 --SANSDIRLELLETFGTVKVLSSPRLSVLNNQTAMLKVVEEVVYFLVDSTTTEYDDRKQ 408 Query: 305 ------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMP 349 T+ + G+V+ TP + + G I L ++ +S P +G +P Sbjct: 409 ARISATTTPQSVSVGMVMSVTPQISADGDITLNVRPTISGISGFKDDPNPSLGDIPNRVP 468 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R R+ ++ + L SG VL GL++D I IPL +P++G LF N TE Sbjct: 469 QIRTREIESMLRLRSGEVAVLGGLMEDRIDHDTGRIPLFGDLPVVGELFTRRDNNVRRTE 528 Query: 410 IFIAATPFLVKP------VAMRDLSRPDDHYS--VEDDAKAFFFNRVNKIYGPKEASEVE 461 + I P L+ A PDD + + F + + + Sbjct: 529 LLIFLRPLLIDEPGMRGGYAEYAGHLPDDDFLLDSPSPGQRNFPHLPLRPLLAPAGAVSA 588 Query: 462 GQNYK 466 + + Sbjct: 589 AEGFS 593 >gi|91794695|ref|YP_564346.1| type II and III secretion system protein [Shewanella denitrificans OS217] gi|91716697|gb|ABE56623.1| type II and III secretion system protein [Shewanella denitrificans OS217] Length = 549 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 102/249 (40%), Gaps = 23/249 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252 QV L+ I EV Q G Q + G +S + GV Sbjct: 277 RQVILEAKIVEVTLSDGYQQGIQWDNVLGHIDSTNIEFGTAKGPNLSNSITSVLGGVTSL 336 Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---- 305 F T++ L+ + L+ P +TA + Q A G + T SST T Sbjct: 337 SVKNTDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGNDEYFVTKVSSTTVTGTNP 396 Query: 306 ------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR 352 +T G+ L TP + S G + L + V + I ++ ++P + Sbjct: 397 ITTPEVELTPFFSGIALDVTPQIDSEGNVLLHVHPSVIKVTEQIKDIQINGSSSELPLAQ 456 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT + SG +++ GL+K D ++ +PLL IP+LG +F N ++TE+ Sbjct: 457 SEIRESDTVIRAASGDVVIIGGLMKSDNVEMVSKVPLLGDIPLLGEIFTNRSKQMKKTEL 516 Query: 411 FIAATPFLV 419 I P +V Sbjct: 517 IIMLKPTVV 525 >gi|291279696|ref|YP_003496531.1| general secretion pathway protein D [Deferribacter desulfuricans SSM1] gi|290754398|dbj|BAI80775.1| general secretion pathway protein D [Deferribacter desulfuricans SSM1] Length = 621 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 103/255 (40%), Gaps = 28/255 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------------GPSKS 229 QV ++ + E + G + G + G S + Sbjct: 330 RKQVYVEALVLETSIEKGADFGVEWLAGGGNENFAGSAGFLNNGALTNFQSPVLEGNSPN 389 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 FAA GG + G+ + + +++ ++ +AI ++ P + + + A Sbjct: 390 FAALPGGFTAAILGNVITYEGVKFPTLSALVNFVKTDSAINIISNPQILTLDNEEAEVFV 449 Query: 290 GGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVN 344 G + K +++ S D G+ L TP + + L+I+ EV + N Sbjct: 450 GENRPFLTSTKFDANNNPVQSYDYRDVGIRLKITPHISDNKTLTLKIEQEVKKVIANAGN 509 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P RK T VEL G T+V++GL+ DD +P LSKIPILG LF++ + Sbjct: 510 DLTAPITLTRKTKTMVELIDGYTMVISGLIGDDTSVSNSEVPFLSKIPILGWLFKSRNRS 569 Query: 405 REETEIFIAATPFLV 419 R +T + + T ++ Sbjct: 570 RSKTNMMVFITAKVI 584 >gi|226953742|ref|ZP_03824206.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244] gi|226835474|gb|EEH67857.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244] Length = 590 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 99/296 (33%), Gaps = 38/296 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 AV T +K+++LL+++ + QV ++ I D K++G + I Sbjct: 289 AVADVRTNTLIVNDTAQNIDKIRKMVDLLDVSVK-QVMIEARIVRASTDFTKEMGVKWGI 347 Query: 220 TGSSSGPSK----------------------------------SFAADFGGKFVSEGGDF 245 + + D G Sbjct: 348 LSQGITRNNDLLVGGSDTTLWNLREPKKDSETGGWKYEIERPDNLNVDLGAVTPGASRIA 407 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TG 303 L F + L A++ ++ P + Q A SG + Y + + Sbjct: 408 FGLISLSDFMLDLELSAVQADGFGEVISTPKVMTADKQPAKIESGTKIPYASSTGGGANA 467 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 D + L TP++ G++ +++ P G + + DT V + Sbjct: 468 VPKTEFIDATLSLDVTPSITPDGKVMMKLNIAKDAPGAPTPTGQL-TISKNSIDTNVLVD 526 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G T+VL G+ + + + +P L +P +G LFR + E+ I TP +V Sbjct: 527 NGETVVLGGIFEQENLSSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIV 582 >gi|254469140|ref|ZP_05082545.1| general (type II) secretion pathway (GSP) D protein, putative [Pseudovibrio sp. JE062] gi|211960975|gb|EEA96170.1| general (type II) secretion pathway (GSP) D protein, putative [Pseudovibrio sp. JE062] Length = 749 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 14/247 (5%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 V+ L++ QV ++ TIAEV + G Q + + AD + G Sbjct: 488 VVQALDLPLS-QVVIEATIAEVNINDNLSYGVQWYLAKGNFAGGIGAVADGASRPTKAAG 546 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-- 301 + + VL AL+ T ++ ++ P LT + G+ A G Q + + S S Sbjct: 547 GALSLNTVG---VDVVLKALQNITKVKVISSPYLTVLDGRKARLVIGDQVPFASRSQSSS 603 Query: 302 -----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVR 354 T V D G+VL P + S + L+IQ EVS V P+ R Sbjct: 604 NDGNVTVTNEVDVKDTGIVLQVEPNIRSNNSVLLQIQQEVSNVVQNKTEEGSLTPTIATR 663 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFIA 413 ++ + + SG TI+L GL+++ + + G+P+L KIP+ G LF+ N+ + TE+ + Sbjct: 664 TINSDIVVESGRTILLGGLIQERKENGESGVPILRKIPVFGELFKENTTNDTRRTELLVM 723 Query: 414 ATPFLVK 420 TP +V+ Sbjct: 724 ITPRVVR 730 >gi|269961295|ref|ZP_06175661.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3] gi|269833961|gb|EEZ88054.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3] Length = 544 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 64/303 (21%), Positives = 111/303 (36%), Gaps = 29/303 (9%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202 +L V + S + + T + + ++V L + + QV L+ I Sbjct: 218 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDEIREVREFLGVSQERMQRQVILEAKI 277 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VLDRFSFE 257 EV Q G S +S G S S D + S+ G +FE Sbjct: 278 LEVTLSDGYQQGINWSNMSASIGNSGSVVVDRNPVSLPLDAIGSLLGGQTNVTFSDGNFE 337 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSV 307 V+ + + L+ P +TA + Q + G + T SS + Sbjct: 338 AVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVEL 397 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKA 356 T G+ L TP + + G + L + V E + ++ +R++ Sbjct: 398 TPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKKLNLGGDFQDIQLPLAKSSIRES 457 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 D+ + G +V+ GL+K + +P L +P LG LFRN ++TE+ I P Sbjct: 458 DSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNVTQKTELVILLKP 517 Query: 417 FLV 419 +V Sbjct: 518 TVV 520 >gi|53723933|ref|YP_104304.1| general secretion pathway protein D [Burkholderia mallei ATCC 23344] gi|121600876|ref|YP_994796.1| general secretion pathway protein D [Burkholderia mallei SAVP1] gi|124384347|ref|YP_001027865.1| general secretion pathway protein D [Burkholderia mallei NCTC 10229] gi|126450814|ref|YP_001082187.1| general secretion pathway protein D [Burkholderia mallei NCTC 10247] gi|238562298|ref|ZP_00440689.2| general secretion pathway protein D [Burkholderia mallei GB8 horse 4] gi|52427356|gb|AAU47949.1| general secretion pathway protein D [Burkholderia mallei ATCC 23344] gi|121229686|gb|ABM52204.1| general secretion pathway protein D [Burkholderia mallei SAVP1] gi|124292367|gb|ABN01636.1| general secretion pathway protein D [Burkholderia mallei NCTC 10229] gi|126243684|gb|ABO06777.1| general secretion pathway protein D [Burkholderia mallei NCTC 10247] gi|238522939|gb|EEP86381.1| general secretion pathway protein D [Burkholderia mallei GB8 horse 4] Length = 757 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + + + V++ L+ QV ++ + E++ +G Q + Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDSR-RAQVYIEALVVELQATTSANLGIQWQV 430 Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255 +G S G + GG G + Sbjct: 431 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 490 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308 +L ++ L+ P L + + A G T S S + T Sbjct: 491 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 550 Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363 D G+ LH P + G + L++ TE S V G N P++ R +TV Sbjct: 551 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 610 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 611 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 666 >gi|254357385|ref|ZP_04973659.1| general secretion pathway protein D [Burkholderia mallei 2002721280] gi|148026449|gb|EDK84534.1| general secretion pathway protein D [Burkholderia mallei 2002721280] Length = 750 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + + + V++ L+ QV ++ + E++ +G Q + Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDSR-RAQVYIEALVVELQATTSANLGIQWQV 423 Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255 +G S G + GG G + Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308 +L ++ L+ P L + + A G T S S + T Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543 Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363 D G+ LH P + G + L++ TE S V G N P++ R +TV Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659 >gi|260556918|ref|ZP_05829135.1| general secretion pathway protein D [Acinetobacter baumannii ATCC 19606] gi|260409524|gb|EEX02825.1| general secretion pathway protein D [Acinetobacter baumannii ATCC 19606] Length = 721 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 K+++LL++ + QV ++ I K++G + I + + Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502 Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 G G + F + L AL+ Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+ Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I +++ G +T V + +G T++L G+ + + +P Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 681 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFR + ++ E+ I TP +V Sbjct: 682 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 713 >gi|169794485|ref|YP_001712278.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii AYE] gi|213158943|ref|YP_002320941.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057] gi|215482074|ref|YP_002324256.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB307-0294] gi|301345422|ref|ZP_07226163.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB056] gi|301510068|ref|ZP_07235305.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB058] gi|301595996|ref|ZP_07241004.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB059] gi|169147412|emb|CAM85273.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii AYE] gi|213058103|gb|ACJ43005.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057] gi|213988167|gb|ACJ58466.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB307-0294] Length = 721 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 K+++LL++ + QV ++ I K++G + I + + Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502 Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 G G + F + L AL+ Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+ Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I +++ G +T V + +G T++L G+ + + +P Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 681 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFR + ++ E+ I TP +V Sbjct: 682 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 713 >gi|289207464|ref|YP_003459530.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix] gi|288943095|gb|ADC70794.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix] Length = 710 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 102/265 (38%), Gaps = 30/265 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------------- 221 +++ L++ QV ++ I +++G + I+G Sbjct: 449 RLVQTLDVP-VQQVLIETRIVIAEDTFNRELGARFGISGTRGDRRTRVGGAGSIEGADAA 507 Query: 222 ------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 G + + + G + + + L AL+ ++ P Sbjct: 508 RDASTAGVGGIAIGDRLNSSLPASGDAGRAGISLLRSGVLLDLELSALQVEGRGEIISSP 567 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + +GQ+AS G + ++ +++GATS + + TP + G + L I+ Sbjct: 568 RVITANGQTASIKQGEEIPFQEA-TASGATSTQFIEAVLSTEVTPQITPNGNVILDIRVT 626 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 EP +P R+ +T V + +G T+VL G+ + D + E +P IP LG Sbjct: 627 KDEPS-QREVLGVPGINKREVNTQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLG 685 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 LFRN + E+ I TP ++ Sbjct: 686 NLFRNRSTENTKAELLIFVTPRVLD 710 >gi|170288656|ref|YP_001738894.1| type II and III secretion system protein [Thermotoga sp. RQ2] gi|170176159|gb|ACB09211.1| type II and III secretion system protein [Thermotoga sp. RQ2] Length = 1282 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 150/395 (37%), Gaps = 45/395 (11%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---DVVVHSPRTMY 88 A A + EI IS+ V + + + + A + + S Y Sbjct: 928 AEDAPLYDLLEEIAGELGISVMF-------VSIPSEKITMKADNVAWEKFIDLISQNYGY 980 Query: 89 LFGKNVGQANVILIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 LF G V ++ + + + + ++ + + V+ +++ +V+ Sbjct: 981 LFDNKNG---VYVVSKPKQDLARRYIYDVPHNFDQIKALIE--FYGGTVYVDSLNNFMVV 1035 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G+ TI ++ L QV + I V R Sbjct: 1036 TGISETI-----------------------KKELDDIIEKLK-KPTKQVEISAKI--VDR 1069 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERA 266 ++ ++ + + + + + FV++ DF + G + + + Sbjct: 1070 SLIDRLSKETVLELTGGNVNVGSSGAGISFFVTDYLDFEKILGEILNSTLSLQFSDQKTN 1129 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 T LA P + SG+ A G + Y T ++ G V + G+ L TP V S Sbjct: 1130 TLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDD 1189 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L + + SEP +N ++P R R+A T + + +G TI + GL+++ + +P Sbjct: 1190 TIELDLFVKASEPGNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLP 1247 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L +P++G FR N+E+ ++ I T +V+P Sbjct: 1248 FLGDLPVIGQFFRTKSENKEKRDLVIFLTVRVVEP 1282 >gi|284432099|gb|ADB84857.1| PilQ [Bdellovibrio sp. JSS] Length = 724 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 55/328 (16%), Positives = 123/328 (37%), Gaps = 20/328 (6%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 +LE R S +V+ + + + D R V T + Sbjct: 403 NNLEPLKVRMFPVSYAKVDELEKKIK-----DFLGDRGRVVGDVRTNALVVTDIEENLER 457 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSK 228 + +++ L+ QV+++ I E + + IG S TG+ + PS Sbjct: 458 AARLIASLD-TQPAQVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSF 516 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + G + + +V + + L E ++ ++ P + +S + A Sbjct: 517 NVNQSAAGSSGALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADIN 576 Query: 289 SGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + + V+ + AT + L TP V + G + +++ + + Sbjct: 577 QTTEVPVRQVTQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVNRQFRGADVSSAGQ 636 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + R+A+T V + +G T V+ G+ + D + G+P ++P + LF+ ++E Sbjct: 637 GAFAVNSREANTRVLVKNGQTAVIGGIYQSDATDGEVGVPWFRELPYVSYLFKTKNISKE 696 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++E+ I TP ++ + + + Sbjct: 697 KSELLIFLTPXIMGQIDNNAGNPTTTDF 724 >gi|118475530|ref|YP_892173.1| type II and III secretion system protein [Campylobacter fetus subsp. fetus 82-40] gi|118414756|gb|ABK83176.1| type II and III secretion system protein [Campylobacter fetus subsp. fetus 82-40] Length = 512 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 59/276 (21%), Positives = 104/276 (37%), Gaps = 32/276 (11%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKS 229 +N L + QV + V+I V G S + Sbjct: 224 LNQLENRLKKQVMIDVSIIAVELSNSYTKGIDWSKFELGFNSYLGNDPVTGAPSSIQFGT 283 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +A + + V G S + VL+ LE + ++ P + ++ Q A T Sbjct: 284 GSAGNPAQSLRNITGGFVLGGGINLSMDGVLNFLETKGRTKVVSSPKIMTMNNQQALITV 343 Query: 290 GGQHLYKTVSSSTGATSVT----------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 G Y+ +T + T + G++L+ P V GRI LRI +S Sbjct: 344 GDNINYRVQEDTTNNNTQTAVTNTTYTQYSIFIGILLNLLPEVSDDGRIMLRINPSLSSF 403 Query: 340 VIGVNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 G + P +K T V++ SG TI+L GL+ + + +P+L IP Sbjct: 404 KYGDDNRRQANIREIAPDTLQKKLSTVVQVNSGDTIILGGLIGETKGKDNTSVPVLGDIP 463 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 + G LF++++ + TE+ TP ++ + + Sbjct: 464 LFGNLFKSTKDSVSTTELIFIITPKVINNETPKQIR 499 >gi|209694066|ref|YP_002261994.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio salmonicida LFI1238] gi|208008017|emb|CAQ78154.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio salmonicida LFI1238] Length = 546 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 101/285 (35%), Gaps = 30/285 (10%) Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + + K+ + + + + QV L+ + EV Q G S ++ Sbjct: 239 QASVITITASPDELRKVKQFLGISHKRLQRQVILEAKLLEVTLSDGYQQGINWSNLTAAV 298 Query: 225 GP---------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 G + G + + +F VL ++ + L+ P Sbjct: 299 GGTDIVFGQVPGTTAGVLPGMDAIGSLLGGQTNITVSDGNFSAVLSFMDTQGDLNVLSSP 358 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSP 325 +TA + Q A G + T SS + ++T G+ L TP + Sbjct: 359 RVTAANNQKAVIKVGRDEYFVTEVSSVTGNGDNSNASPEVTLTPFFSGISLDVTPQIDDK 418 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSY-----------RVRKADTTVELPSGGTIVLAGLL 374 G + L + V + D+ +R++D+ + SG +V+ GL+ Sbjct: 419 GNVMLHVHPSVIDVETETKIIDLGDVGGVLELPLAKSSIRESDSVIRAKSGDVVVIGGLM 478 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 K +P L IP+LG LFRN +TE+ I P +V Sbjct: 479 KSQTVDQVSKVPFLGDIPVLGHLFRNVSQLTTKTELVILLKPTVV 523 >gi|85704683|ref|ZP_01035785.1| general secretion pathway protein D [Roseovarius sp. 217] gi|85671091|gb|EAQ25950.1| general secretion pathway protein D [Roseovarius sp. 217] Length = 648 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 64/371 (17%), Positives = 126/371 (33%), Gaps = 41/371 (11%) Query: 102 IGHDGKQMLNLDIL-IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + + + + + L +R+ E + T V G+ ++ Q A Sbjct: 240 LDRPQRSIATEVVHLNYANATDLADVIRQSFGAPEASTEGAAPTAVPGGITIVAEEQQNA 299 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + ++ + ++ DQV ++ I E+ + + FQ Sbjct: 300 LIITAPTDRIASITGAVRGLDQR---------PDQVLIEAVIFELSVESFSDLSFQFGGV 350 Query: 221 GSSSGPSKS-------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + + G + GG D+ L AL + Sbjct: 351 IDGATVGGVEFALQGRPTLTSLVSTVLAGNAPTGGGTGGSIAAFDKSGIGGFLAALASKS 410 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHF 318 + + L+ P++ ++ + A + T S ST ++ D G+ L Sbjct: 411 STKLLSTPSILTLNNREAEIVVAQNVPFVTGSFSTVGDSAVPNQPFQTIQRQDVGLTLTV 470 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TP + + L I EVS +A R+ T V + G I+L GLL++ Sbjct: 471 TPQITRDKTVRLEINQEVSNLTNAASAAGGEITSKRELSTNVLVRDGHVIMLGGLLENGS 530 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA---------MRDLSR 429 + + +P LS++P+LG LF+ N + + + P ++ R+ R Sbjct: 531 GSVNQRVPGLSELPLLGRLFKGRSVNENQRILLVMLRPRILSSDEEARELTKRLAREAKR 590 Query: 430 PDDHYSVEDDA 440 D+ + DD Sbjct: 591 AADYIAPADDG 601 >gi|325123720|gb|ADY83243.1| type IV pilus assembly protein PilQ [Acinetobacter calcoaceticus PHEA-2] Length = 721 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 95/272 (34%), Gaps = 37/272 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 K+++LL++ + QV ++ I K++G + I + + Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502 Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 G G + F + L AL+ Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYG 562 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P + Q A +G Q Y+T ++S S + D + L TP++ G+ Sbjct: 563 EVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGK 622 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I +++ G T V + +G T++L G+ + + +P Sbjct: 623 IQMKLDISKDSVS-GAAPNGELILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKVPF 681 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P +G LFR + + ++ E+ I TP +V Sbjct: 682 FGDLPGIGRLFRKDQKSDDKQELLIFVTPRIV 713 >gi|262280337|ref|ZP_06058121.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] gi|262258115|gb|EEY76849.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] Length = 717 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 100/268 (37%), Gaps = 33/268 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228 K+++LL++ + QV ++ I K++G + I + Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGVNSNNSLLVGGSDTTLWNL 502 Query: 229 ---------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 + D G + F + L AL+ ++ Sbjct: 503 REPDDKGKYTIERPDNLNVDLGVTSTGASSIAFSLISMSDFMLDLELSALQADGYGEVIS 562 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 P + Q A +G Q Y+T ++S + + D + L TP++ G+I ++ Sbjct: 563 TPKVMTADKQRARVATGQQVPYQTTTNSAAGSTATTSFKDALLSLDVTPSITPDGKIQMK 622 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + G++ + +T V + +G T++L G+ + + +P L + Sbjct: 623 LDISKDSVADSAPNGEL-ILNKNQINTNVLVNNGETVILGGVFEQATSNSQTKVPFLGDL 681 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P++G LFR + ++ E+ I TP +V Sbjct: 682 PVVGRLFRKDVKSDDKQELLIFVTPRIV 709 >gi|78224554|ref|YP_386301.1| type II and III secretion system protein:NolW-like [Geobacter metallireducens GS-15] gi|78195809|gb|ABB33576.1| type II and III secretion system protein:NolW-like protein [Geobacter metallireducens GS-15] Length = 636 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 99/251 (39%), Gaps = 14/251 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---------KSFAAD 233 +V+ L+ QV ++ IAEV D K++G Q +++G + + +F Sbjct: 350 QVIQKLDKR-RRQVFVQAVIAEVSLDKAKELGLQLAVSGGGTAGNTAEAGVFDPFNFVGG 408 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + + + VL AL A+ L+ P + + A G Sbjct: 409 ASPQQAAILNVLTGFAGSSNLQLGGVLKALISNGAVNVLSTPNILTSDNKEAEIFVGENV 468 Query: 294 LY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 + S+ S+ D G+ L TP + + L I E+S V Sbjct: 469 PFLTQTNLTSTGLSQQSIERKDTGITLRITPQISEGEFVKLDIYQEISAVKDSVGQAKDL 528 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R A T V + T+V+ GL++D + IP+L IP+LG F+ RE+T Sbjct: 529 VTTKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPILGDIPLLGWFFKTKSARREKTN 588 Query: 410 IFIAATPFLVK 420 + I TP +++ Sbjct: 589 LMIVLTPRIIR 599 >gi|57242551|ref|ZP_00370489.1| general secretory pathway protein D [Campylobacter upsaliensis RM3195] gi|57016836|gb|EAL53619.1| general secretory pathway protein D [Campylobacter upsaliensis RM3195] Length = 468 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 98/255 (38%), Gaps = 16/255 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L + QV + V+I V + G + + + S Sbjct: 197 GEYITKLENRLKKQVIIDVSIIAVNLNENHSSGINWQNFNLDFVSTTQNGQNSFIQLQSG 256 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G G+ +F +VL+ L + + L+ P L A++ Q A + G Y+ SS Sbjct: 257 QGFVKNLGLRANINFNSVLNFLSQNGKTQVLSNPKLMALNNQQAIISVGDTINYQVKESS 316 Query: 302 TGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----- 347 G + TT G++L P + +I LRI +S+ + Sbjct: 317 KGTENGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPR 376 Query: 348 --MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P +K T V + + T++L GL+ + + + LSKIP+LG LF + Sbjct: 377 TIAPDTIQKKLSTVVSMENNQTLILGGLISHNQIKEASEVSFLSKIPLLGLLFSGDETSS 436 Query: 406 EETEIFIAATPFLVK 420 TEI TP +V Sbjct: 437 NSTEIVFIITPSIVD 451 >gi|254507437|ref|ZP_05119572.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16] gi|219549693|gb|EED26683.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16] Length = 527 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235 + QV L+ I EV Q G S SS+G + + G Sbjct: 241 RMQRQVILEAKILEVTLSDGYQQGINWSKAFSSNGTNYTIGQGSIVKDTSGSIIPAVLPG 300 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + V+ SF+ VL + + L+ P +TA + Q A G + Sbjct: 301 LDAIGTLLGGQSNLVISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYF 360 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 T SS + +T G+ L TP + G + L + V + V Sbjct: 361 VTDLSSVVGNGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVNEQVKE 420 Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P+L +P+LG Sbjct: 421 IGFGDSRITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTVDQVSKVPVLGDVPVLGH 480 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 481 LFRNTSKLTQKTELVILLKPTVV 503 >gi|291327009|ref|ZP_06126658.2| competence protein E [Providencia rettgeri DSM 1131] gi|291312226|gb|EFE52679.1| competence protein E [Providencia rettgeri DSM 1131] Length = 358 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 5/228 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + I R L+++G + + + + +S F+V + D Sbjct: 132 KQVQITAHIISSSRTALQELGLEWGMMAGGNLNANHLYRYNRYSSISGQFAFNVLSLGDG 191 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 E L ALE+ + +A P L A Q AS G + V+S+ T V D Sbjct: 192 L-LEMKLKALEKENLLSIIASPRLVASHQQPASIQQGTEIP--YVTSNDKKTHVQFKDAV 248 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371 + + TP+++ +I L ++ + P + + + ++ T V + + T++L Sbjct: 249 LGMDVTPSIVRDEKIELNLKISHNSPDTALTSSQHHHLAINKQEIATNVTIKNNETLILG 308 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ + ++ + G+P LS IP LG LF N+ + ++ + + TP L+ Sbjct: 309 GIFQQKQEKTEMGLPFLSHIPFLGTLFTNTAEHTDKRVLIVFITPKLI 356 >gi|225850376|ref|YP_002730610.1| general secretion pathway protein D [Persephonella marina EX-H1] gi|225645330|gb|ACO03516.1| general secretion pathway protein D [Persephonella marina EX-H1] Length = 669 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 119/305 (39%), Gaps = 29/305 (9%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + + + V NL + QV + I EV LK+IG + + Sbjct: 338 VADKASNSIIIYANKTEYEAIKELVQNLDK--QKKQVLVTALITEVSEQALKEIGVRWQV 395 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------------HALER 265 GS G + G + G V GVL + LER Sbjct: 396 FGSQGGAAFRGGISKEGFYNIIGSTNFVAGVLSTSGENVEIGGNVLFFPDLLFLFSLLER 455 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPT 321 T ++ P + + AS + + + + G++L TP Sbjct: 456 GTGFNIVSSPKILTMDNIEASINVSQVTPFAQSVKFDINGNPIINYDYKEVGLILKVTPH 515 Query: 322 VLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 + I + I EV+E P IG + +P R+ +TT+ + +G TIVL GL+ Sbjct: 516 ISGDN-IVMEIHQEVNEVIGYEKPQIGEISYVVPITSKRELNTTITVTNGKTIVLGGLVS 574 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 + EG+P S IPI+G LF+ + +T +F+ TPF+++ DL+R + + Sbjct: 575 KKTIKTMEGVPFFSSIPIIGNLFKYRSEDLNKTNLFVFLTPFIIE--KPEDLARITEEHQ 632 Query: 436 VEDDA 440 +A Sbjct: 633 KLSEA 637 >gi|157738059|ref|YP_001490743.1| general secretion pathway protein D [Arcobacter butzleri RM4018] gi|157699913|gb|ABV68073.1| general secretion pathway protein D [Arcobacter butzleri RM4018] Length = 478 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 14/241 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------GG 243 + QV ++ I EV +++ +IG + I +S+ A S G Sbjct: 173 KAQVYVQAKIIEVNNELVNKIGISYGIINASARSDGINAISSNLNGGSNAIKEAVDTLGI 232 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG----QHLYKTVS 299 S + + L+ L++ A+ ++EP++ AI + +S G + Sbjct: 233 RMSDVNIKSGLALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISSTLTD 292 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADT 358 T+ D G+ L P + S ++ L I T + V+AG P ++ T Sbjct: 293 GGLQRTNYEREDIGLTLKVKPRISSDTKLTLEINTLLEGIKSTSVSAGQNPDTLKKEIKT 352 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G ++++ GL+++ + +++ +P+L IP+ G LF+N ++ + I TP++ Sbjct: 353 AAILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVIIVTPYM 412 Query: 419 V 419 + Sbjct: 413 I 413 >gi|281412148|ref|YP_003346227.1| type II and III secretion system protein [Thermotoga naphthophila RKU-10] gi|281373251|gb|ADA66813.1| type II and III secretion system protein [Thermotoga naphthophila RKU-10] Length = 1282 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 150/395 (37%), Gaps = 45/395 (11%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---DVVVHSPRTMY 88 A A + EI IS+ V + + + + A + + S Y Sbjct: 928 AEDAPLYDLLEEIAGELGISVMF-------VSIPSEKITMKADNVAWEKFIDLISQNYGY 980 Query: 89 LFGKNVGQANVILIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 LF G V ++ + + + + ++ + + V+ +++ +V+ Sbjct: 981 LFDNKNG---VYVVSKPKQDLARRYIYDVPHNFDQIKALIE--FYGGTVYVDSLNNFMVV 1035 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G+ TI ++ L QV + I V R Sbjct: 1036 TGISETI-----------------------KKELDDIIEKLK-KPTKQVEISAKI--VDR 1069 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERA 266 ++ ++ + + + + + FV++ DF + G + + + Sbjct: 1070 SLIDRLSKETVLELTGGNVNVGSSGAGISFFVTDYLDFEKILGEILNSNLSLQFSDQKTN 1129 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 T LA P + SG+ A G + Y T ++ G V + G+ L TP V S Sbjct: 1130 TLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDD 1189 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L + + SEP +N ++P R R+A T + + +G TI + GL+++ + +P Sbjct: 1190 TIELDLFVKASEPGNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLP 1247 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L +P++G FR N+E+ ++ I T +V+P Sbjct: 1248 FLGDLPVIGQFFRTKSENKEKRDLVIFLTVKVVEP 1282 >gi|609625|gb|AAA58785.1| EpsD [Vibrio cholerae] Length = 674 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 111/320 (34%), Gaps = 49/320 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204 G + + V ++ + S +V+ L+I QV ++ I E Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237 + +G Q S S G Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRN 412 Query: 238 ------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + + + +++A+ ++ L+ P++T + A Sbjct: 413 ETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEA 472 Query: 286 SFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 SF G + T ++ +V + G+ L P + + L I+ EVS + Sbjct: 473 SFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVL 532 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR+ Sbjct: 533 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRS 591 Query: 401 SRFNREETEIFIAATPFLVK 420 + E+ + + P +++ Sbjct: 592 TSSQVEKKNLMVFIKPTIIR 611 >gi|323498120|ref|ZP_08103124.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM 21326] gi|323316831|gb|EGA69838.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM 21326] Length = 561 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 58/262 (22%), Positives = 107/262 (40%), Gaps = 28/262 (10%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------ 231 +++ L+I + QV ++ I V L ++G + + ++ + + Sbjct: 300 IIDTLDIPVK-QVQIEARIVTVNEGNLDELGVRWGFSSTNGNNTVGGSIESNLFQAGLLE 358 Query: 232 ------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + F V + + L AL+R + ++ P L Sbjct: 359 GDTLPVDDFLNVNLAATSTTASSIAFQVAKLGSDLLLDLELSALQRESKAEVISSPRLIT 418 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + + A G + Y SS+GATSVT + L TP + R+ L + P Sbjct: 419 TNKKPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRP 477 Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 V+ G+ + ++ T V + +G T+VL G+ + + + +PLL +P+LGAL Sbjct: 478 GDVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSVTDTVDKVPLLGDLPVLGAL 537 Query: 398 FRNSRFNREETEIFIAATPFLV 419 FR S ++E+ I TP +V Sbjct: 538 FRRSYQQMGKSELLIFVTPKVV 559 >gi|121586611|ref|ZP_01676396.1| general secretion pathway protein D [Vibrio cholerae 2740-80] gi|121726696|ref|ZP_01679921.1| general secretion pathway protein D [Vibrio cholerae V52] gi|147674158|ref|YP_001218221.1| general secretion pathway protein D [Vibrio cholerae O395] gi|153212585|ref|ZP_01948332.1| general secretion pathway protein D [Vibrio cholerae 1587] gi|153802934|ref|ZP_01957520.1| general secretion pathway protein D [Vibrio cholerae MZO-3] gi|153817437|ref|ZP_01970104.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457] gi|153821293|ref|ZP_01973960.1| general secretion pathway protein D [Vibrio cholerae B33] gi|153825504|ref|ZP_01978171.1| general secretion pathway protein D [Vibrio cholerae MZO-2] gi|153828338|ref|ZP_01981005.1| general secretion pathway protein D [Vibrio cholerae 623-39] gi|227082847|ref|YP_002811398.1| general secretion pathway protein D [Vibrio cholerae M66-2] gi|229507219|ref|ZP_04396724.1| general secretion pathway protein D [Vibrio cholerae BX 330286] gi|229509860|ref|ZP_04399341.1| general secretion pathway protein D [Vibrio cholerae B33] gi|229513661|ref|ZP_04403125.1| general secretion pathway protein D [Vibrio cholerae TMA 21] gi|229516981|ref|ZP_04406427.1| general secretion pathway protein D [Vibrio cholerae RC9] gi|229524711|ref|ZP_04414116.1| general secretion pathway protein D [Vibrio cholerae bv. albensis VL426] gi|229527341|ref|ZP_04416733.1| general secretion pathway protein D [Vibrio cholerae 12129(1)] gi|229606725|ref|YP_002877373.1| general secretion pathway protein D [Vibrio cholerae MJ-1236] gi|254285928|ref|ZP_04960890.1| general secretion pathway protein D [Vibrio cholerae AM-19226] gi|254851270|ref|ZP_05240620.1| general secretion pathway protein D [Vibrio cholerae MO10] gi|255744309|ref|ZP_05418261.1| general secretion pathway protein D [Vibrio cholera CIRS 101] gi|262158581|ref|ZP_06029696.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1] gi|262170026|ref|ZP_06037715.1| general secretion pathway protein D [Vibrio cholerae RC27] gi|298500452|ref|ZP_07010256.1| general secretion pathway protein D [Vibrio cholerae MAK 757] gi|11182423|sp|P45779|GSPD_VIBCH RecName: Full=General secretion pathway protein D; AltName: Full=Cholera toxin secretion protein epsD; Flags: Precursor gi|121549170|gb|EAX59203.1| general secretion pathway protein D [Vibrio cholerae 2740-80] gi|121630857|gb|EAX63239.1| general secretion pathway protein D [Vibrio cholerae V52] gi|124116456|gb|EAY35276.1| general secretion pathway protein D [Vibrio cholerae 1587] gi|124121547|gb|EAY40290.1| general secretion pathway protein D [Vibrio cholerae MZO-3] gi|126512023|gb|EAZ74617.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457] gi|126521225|gb|EAZ78448.1| general secretion pathway protein D [Vibrio cholerae B33] gi|146316041|gb|ABQ20580.1| general secretion pathway protein D [Vibrio cholerae O395] gi|148876168|gb|EDL74303.1| general secretion pathway protein D [Vibrio cholerae 623-39] gi|149740789|gb|EDM54880.1| general secretion pathway protein D [Vibrio cholerae MZO-2] gi|150424110|gb|EDN16049.1| general secretion pathway protein D [Vibrio cholerae AM-19226] gi|227010735|gb|ACP06947.1| general secretion pathway protein D [Vibrio cholerae M66-2] gi|227014619|gb|ACP10829.1| general secretion pathway protein D [Vibrio cholerae O395] gi|229334973|gb|EEO00458.1| general secretion pathway protein D [Vibrio cholerae 12129(1)] gi|229338292|gb|EEO03309.1| general secretion pathway protein D [Vibrio cholerae bv. albensis VL426] gi|229346044|gb|EEO11016.1| general secretion pathway protein D [Vibrio cholerae RC9] gi|229349538|gb|EEO14494.1| general secretion pathway protein D [Vibrio cholerae TMA 21] gi|229353334|gb|EEO18273.1| general secretion pathway protein D [Vibrio cholerae B33] gi|229354724|gb|EEO19645.1| general secretion pathway protein D [Vibrio cholerae BX 330286] gi|229369380|gb|ACQ59803.1| general secretion pathway protein D [Vibrio cholerae MJ-1236] gi|254846975|gb|EET25389.1| general secretion pathway protein D [Vibrio cholerae MO10] gi|255737834|gb|EET93227.1| general secretion pathway protein D [Vibrio cholera CIRS 101] gi|262021434|gb|EEY40146.1| general secretion pathway protein D [Vibrio cholerae RC27] gi|262029742|gb|EEY48391.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1] gi|297540621|gb|EFH76678.1| general secretion pathway protein D [Vibrio cholerae MAK 757] gi|327485201|gb|AEA79608.1| General secretion pathway protein D [Vibrio cholerae LMA3894-4] Length = 674 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 111/320 (34%), Gaps = 49/320 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204 G + + V ++ + S +V+ L+I QV ++ I E Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237 + +G Q S S G Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRN 412 Query: 238 ------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + + + +++A+ ++ L+ P++T + A Sbjct: 413 ETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEA 472 Query: 286 SFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 SF G + T ++ +V + G+ L P + + L I+ EVS + Sbjct: 473 SFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVL 532 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR+ Sbjct: 533 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRS 591 Query: 401 SRFNREETEIFIAATPFLVK 420 + E+ + + P +++ Sbjct: 592 TSSQVEKKNLMVFIKPTIIR 611 >gi|332873777|ref|ZP_08441719.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059] gi|332738000|gb|EGJ68885.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059] Length = 712 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 K+++LL++ + QV ++ I K++G + I + + Sbjct: 435 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 493 Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 G G + F + L AL+ Sbjct: 494 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 553 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+ Sbjct: 554 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 613 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I +++ G +T V + +G T++L G+ + + +P Sbjct: 614 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 672 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFR + ++ E+ I TP +V Sbjct: 673 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 704 >gi|303248827|ref|ZP_07335077.1| general secretion pathway protein D [Desulfovibrio fructosovorans JJ] gi|302489768|gb|EFL49699.1| general secretion pathway protein D [Desulfovibrio fructosovorans JJ] Length = 695 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 104/310 (33%), Gaps = 33/310 (10%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 G + +++ +++ + + +++ L+ V ++ I EV Sbjct: 318 GTTKKELNAEGVRIIADKGTNTLVVMAPSEEFPLFDEIIAQLD-RPRRGVFVEALIMEVS 376 Query: 207 RDILKQIGFQHSITGSSSGPS---------KSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 D G G + F + + +F Sbjct: 377 TDKSVTFGVNWVAGGRVNAVGDNKKGGLVYGGFESSSTSVGTQNSLTLPGGLSVGMLTFP 436 Query: 258 TVL--------HALERATAIR----TLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302 + AL L+ P L + + AS T Y T + S Sbjct: 437 VKIGDFVYSNIQALISDGKSNNTFNILSTPQLMTLDNEEASITVAENRPYLTATDSGQNK 496 Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKA 356 D G L TP + I L+I EVS P+ R R Sbjct: 497 QDRTYQQFDYKDVGTKLKITPHIGQSDSIRLKILQEVSRVDKAETLDTGSLQPTTRKRAT 556 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 TTV++ G TIV++GL+ Q +P +S IP+LG LF++ RE+T +++ TP Sbjct: 557 QTTVQVKDGQTIVISGLMGVSDQDSFSNVPGISDIPVLGWLFKHKSKTREKTNLYVFITP 616 Query: 417 FLVKPVAMRD 426 +V+ A Sbjct: 617 RIVQSPAQAA 626 >gi|93006778|ref|YP_581215.1| type II and III secretion system protein [Psychrobacter cryohalolentis K5] gi|92394456|gb|ABE75731.1| type II and III secretion system protein [Psychrobacter cryohalolentis K5] Length = 750 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 110/271 (40%), Gaps = 33/271 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +N L+ QV ++ I EV D Q+G Q ++ ++SG + G VS Sbjct: 393 EDAVNQLDSR-RSQVLIQAAIVEVSGDDATQLGVQWALGNANSGYGVVNFNNVGASAVSL 451 Query: 242 GGDFSVKGV------------------------LDRFSFETVLHALERATAIRTLAEPTL 277 G + + +L AL+ +T+ L+ P++ Sbjct: 452 AAAALSGGTGISAAAGSIAGALLGIGSSSKDSKGNAQFYGAILQALDSSTSANLLSMPSI 511 Query: 278 TAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + AS G + T S S+ ++ D G+ L+ P + + G + L Sbjct: 512 LTLDNEKASILVGQNVPFVTGSYTTGSDSSTNPFQTIDRQDIGINLNVIPHIGANGTVRL 571 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRK-ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + EVS V G + +TT+ TI L GL++D+ ++ +P L Sbjct: 572 EVSQEVSSVVPGSAGNASGLITNKSLINTTILADDQQTIALGGLMRDNSTTRQQKVPGLG 631 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P++G LFR+ N +++ + I P +++ Sbjct: 632 NVPLIGRLFRSDNDNSQKSNLIIFLQPTILR 662 >gi|77459397|ref|YP_348904.1| type II and III secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77383400|gb|ABA74913.1| general secretion pathway protein D [Pseudomonas fluorescens Pf0-1] Length = 783 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 68/296 (22%), Positives = 119/296 (40%), Gaps = 31/296 (10%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + T + + ++V++LL+ QV ++ I EV D + G Q Sbjct: 432 TIQADATTNTLLISAPEPLYRNLREVIDLLDQR-RAQVVIESLIVEVGEDDASEFGVQWQ 490 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVK------------------GVLDRFSFETVL 260 G+ G A+ GG ++ G S+ G+ + + Sbjct: 491 T-GNLGGKGVIGGANLGGSGINVNGKTSLDVLPQGLNLGYVNGTVDIPGIGKILDLKVLA 549 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDY 312 AL+ L+ P L + ++AS G + + +S+ +VT + Sbjct: 550 RALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEV 609 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIV 369 G+ L+ P + G + L I EVS +A + R DT++ L G +V Sbjct: 610 GLKLNVRPQISEGGTVKLDIYQEVSSIDERASAAANSAGIVTSKRALDTSILLDDGQIMV 669 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 L GLL+D Q + +P LS IP +GALFRN R + +T + + P++++ A Sbjct: 670 LGGLLQDGYSQSNDAVPWLSNIPGIGALFRNERRSITKTNLMVFLRPYIIRDSAAG 725 >gi|262045226|ref|ZP_06018252.1| protein transporter HofQ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037436|gb|EEW38681.1| protein transporter HofQ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 331 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 5/230 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGVL 251 QV L I + L+++G + + + S P + G + Sbjct: 99 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNIGKI 158 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + E L ALER + +A P L A Q AS G + Y+ S +GATSV + Sbjct: 159 NGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 218 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 219 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETLA 278 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 279 LGGIFSQKNKTARDSVPLLDDIPVLGRLFRRDGKDNERRELVVFITPRIL 328 >gi|332851353|ref|ZP_08433405.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150] gi|332868764|ref|ZP_08438387.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113] gi|332730069|gb|EGJ61397.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150] gi|332733193|gb|EGJ64390.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113] Length = 712 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 K+++LL++ + QV ++ I K++G + I + + Sbjct: 435 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 493 Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 G G + F + L AL+ Sbjct: 494 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 553 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P + Q+A +G Q Y++ ++S + + D + L+ TP++ G+ Sbjct: 554 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 613 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I +++ G +T V + +G T++L G+ + + +P Sbjct: 614 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 672 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFR + ++ E+ I TP +V Sbjct: 673 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 704 >gi|82703023|ref|YP_412589.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411088|gb|ABB75197.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 789 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 112/302 (37%), Gaps = 36/302 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T ++ + V+ L++ QV ++ IAE+ D + G Q Sbjct: 418 IQADAATNSIIITAPDAIYNNLRAVVEKLDVRRV-QVYIEALIAEITADRAAEFGIQWQN 476 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVK--------------------------GVLDR 253 +++ + GG + G+ Sbjct: 477 LSNAAQGGTQVFGGTNFNAGTAGGGSIISTAQNPIANAASGLTIGIMNGLVTAIPGIGPV 536 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------STGAT 305 + T++ ALE L+ PTL ++ + A G T ++ Sbjct: 537 LNIHTLIRALETDANANILSTPTLLTLNNEEARIIIGQNVPIPTGQFIPPVGGAVTSPFQ 596 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPS 364 +V+ D G+ L P + + ++I EVS V G NA + R ++TV + Sbjct: 597 TVSRQDVGLSLKIKPLISEGNTVRVQIFQEVSSVVPGTVNATNGLITNKRSIESTVLVDD 656 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G +VL GL++D + E IPL+ IP+ G LF ++ +R +T + + P L++ Sbjct: 657 GQILVLGGLMQDSVNDSVERIPLVGAIPLFGQLFSYNKRSRNKTNLMVFLRPTLMRAGDA 716 Query: 425 RD 426 D Sbjct: 717 AD 718 >gi|293610712|ref|ZP_06693012.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827056|gb|EFF85421.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 721 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 95/272 (34%), Gaps = 37/272 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 K+++LL++ + QV ++ I K++G + I + + Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502 Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 G G + F + L AL+ Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYG 562 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P + Q A +G Q Y+T ++S S + D + L TP++ G+ Sbjct: 563 EVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGK 622 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I +++ G T V + +G T++L G+ + + +P Sbjct: 623 IQMKLDISKDSVS-GAAPNGELILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKVPF 681 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P +G LFR + + ++ E+ I TP +V Sbjct: 682 FGDLPGIGRLFRKDQKSDDKQELLIFVTPRIV 713 >gi|254497667|ref|ZP_05110447.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii LLAP12] gi|254353104|gb|EET11859.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii LLAP12] Length = 652 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 99/249 (39%), Gaps = 28/249 (11%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------- 233 ++ L++ + QV ++ I EV +D + +G + ++ + A+ Sbjct: 407 LIKQLDVPVK-QVLIEARIVEVSKDFARDLGIRWGVSKPNHLSGTLQGANQMEQGTAPAN 465 Query: 234 ---------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 ++ + D + L ALE ++ P L Sbjct: 466 VNPYTQRLNLDLVAAPATGMTPASVGIALAKLGDNILLDLELSALESEGRAELISSPRLI 525 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + Q A SG + Y+ +SS GAT+V + L TP + +I + ++ + Sbjct: 526 TTNQQPAVIDSGQEIPYQESTSS-GATAVAFKKAVLSLRVTPQITPDSKILMDLKIN-QD 583 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 +P+ ++ T V + +G TIVL G+ + D + IP L ++P++G LF Sbjct: 584 TASTQLFNGVPAILTKEIQTNVLVSNGQTIVLGGIYQQDKSRTITRIPFLGQLPVVGNLF 643 Query: 399 RNSRFNREE 407 RN++ + Sbjct: 644 RNTQIVINK 652 >gi|325917654|ref|ZP_08179848.1| type IV pilus secretin PilQ/competence protein [Xanthomonas vesicatoria ATCC 35937] gi|325536118|gb|EGD07920.1| type IV pilus secretin PilQ/competence protein [Xanthomonas vesicatoria ATCC 35937] Length = 616 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 99/267 (37%), Gaps = 33/267 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------------SS 224 DQV ++ I + +G + I G + Sbjct: 348 RPVDQVLIESRIVIATDTFARDLGARFGIAGRQQYGGNTGVISGSTTNNVSILNNGIHNV 407 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 +F G + G + + F+ + L A++ ++ P + + + Sbjct: 408 PGGLNFNLPAGTFTTNTAGAIAYTLLGRNFALDMELSAMQEEGRGEVVSNPRIVTSNQRE 467 Query: 285 ASFTSGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 G + Y T +S +V + + L TPT+ + R+ L + + E Sbjct: 468 GVIKQGREIGYVTISGGGASGQSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 527 Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 +N G +P R+ +T V + G T+V+ G+ + ++ +P L IP LG L Sbjct: 528 RFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESIAKVPFLGDIPFLGNL 587 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAM 424 F+ ++E+ E+ + TP +++ + Sbjct: 588 FKKRGRSKEKAELLVFVTPKVLRVASA 614 >gi|149189065|ref|ZP_01867353.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1] gi|148837028|gb|EDL53977.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1] Length = 538 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 62/301 (20%), Positives = 109/301 (36%), Gaps = 31/301 (10%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 ++ G R++ + +A L+ R ++ +++ QV L+ I Sbjct: 221 KLIGTGDGRSVVVTPQASLLTLRAYPDEIRQV------REFLDMSQQRLHRQVILEAKIL 274 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSFE 257 EV Q G S G++ G + V + FE Sbjct: 275 EVTLSDGYQQGISWSNIGAAIGSGGVSISRPAQNPVPPLNQIGTLLGGQTNVTITDGHFE 334 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------TGATSV 307 VL + + L+ P +TA + Q + G + T S+ + Sbjct: 335 AVLSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTDISTVIGSGENANVAPQVEL 394 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSY------RVRKADT 358 T G+ L TP + G + L + EV E + +R++D+ Sbjct: 395 TPFFSGISLDVTPQIDEKGNVLLHVHPAVIEVQEEKKEIEVLGDSIIVPLAKSSIRESDS 454 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + G +V+ GL+K ++ +P L IP LG LFRN++ E+TE+ I P + Sbjct: 455 VIRAADGDVVVIGGLMKSATTEMVSKVPYLGDIPALGHLFRNTQNVTEKTELVILLRPTV 514 Query: 419 V 419 V Sbjct: 515 V 515 >gi|260222239|emb|CBA31603.1| hypothetical protein Csp_D27950 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 711 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 97/265 (36%), Gaps = 29/265 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 A QV ++ IAEV D + G Q + G++ G + S Sbjct: 394 ARRAQVFVESLIAEVSADKAAEFGIQWQGALGNAGDSAIGVLGTNFGSAGSNIISLAAAG 453 Query: 239 VSEGGDFSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 S + + + + LE + L+ P L + + A G Sbjct: 454 ASGTVSPAKGLNIGVANRTNGVYVLGFLARFLESTGSGNVLSTPNLLTLDNEEAKIVIGQ 513 Query: 292 QHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VI 341 + T + ++ D G+ L P + G I L I EVS Sbjct: 514 NVPFVTGQFTNTGSNGGSVNPFQTIERKDVGLTLKVKPQISENGTIKLAIYQEVSSVLAS 573 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 A + P+ R ++ V + G +VL GLL+D+ +E +P L+ +P G LF++ Sbjct: 574 TAGAANGPTTNKRTIESNVLVEDGAVVVLGGLLQDEYAGNQEKVPGLADVPWFGNLFKSE 633 Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426 +R++T + + P +V+ Sbjct: 634 SRSRKKTNLMVFLRPVVVRDATATQ 658 >gi|297570326|ref|YP_003691670.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] gi|296926241|gb|ADH87051.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] Length = 514 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 71/338 (21%), Positives = 122/338 (36%), Gaps = 35/338 (10%) Query: 114 ILIERDIAHLEMTL-RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 ++ + L + R+ + V + VV VR + + A L+ Sbjct: 164 VIRVMSVEDLRRQVERQGLYLEEEHVSPLQTRVV---PVRFSEPASLAESLTPMLSRDKE 220 Query: 173 RNQYANSSSKKVMNLLNIA------------------GEDQVTLKVTIAEVRRDILKQIG 214 N + + + L I QV ++ I E +++ +++G Sbjct: 221 GNPRGSVTVDRHTRSLVIRDTAENLERLTSFLQEVDQATPQVLIEAHIIETNQEVARELG 280 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGG-----------DFSVKGVLDRFSFETVLHAL 263 Q A F + + G + E L AL Sbjct: 281 VQWGSFWRGQQRVSDAAGGFTYQAGNPIGEQYSLDVLTGEVGFYTASVAGNILEMQLQAL 340 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 +R + L+ P++ + A SG + Y+++ G TSV D + L TP V+ Sbjct: 341 QREGKVNILSRPSVATLDNHEAVLESGTEVPYQSI--EDGTTSVQYKDAVLRLLVTPQVI 398 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 S I L+I+ + E + P + A T + + G T+V+AGL K+ Sbjct: 399 SRENIKLKIEAQKDEVDLTRTVMGNPFIIKKLAQTNLIVEDGSTVVIAGLAKERQASSST 458 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G+PLL IP LG FR+ E E+ I TP ++ Sbjct: 459 GVPLLKNIPGLGVFFRSDARAGEFEELLIFITPRILSA 496 >gi|156975932|ref|YP_001446839.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116] gi|156527526|gb|ABU72612.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116] Length = 544 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 63/303 (20%), Positives = 111/303 (36%), Gaps = 29/303 (9%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202 +L V + S + + T + + ++V L + + QV L+ I Sbjct: 218 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDEIREVREFLGVSQERMQRQVILEAKI 277 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VLDRFSFE 257 EV Q G S +S G S S D + ++ G +FE Sbjct: 278 LEVTLSDGYQQGINWSNMSASIGNSGSILVDRNPAKLPLDAIGTLLGGQTNVTFSDGNFE 337 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSV 307 V+ + + L+ P +TA + Q + G + T SS + Sbjct: 338 AVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVEL 397 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKA 356 T G+ L TP + + G + L + V E + ++ +R++ Sbjct: 398 TPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQLNLGGDFQNIQLPLAKSSIRES 457 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 D+ + G +V+ GL+K + +P L +P LG LFRN ++TE+ I P Sbjct: 458 DSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNVTQKTELVILLKP 517 Query: 417 FLV 419 +V Sbjct: 518 TVV 520 >gi|269960458|ref|ZP_06174830.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834535|gb|EEZ88622.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 226 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 12/191 (6%) Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS RI L Sbjct: 1 MLAEPSLTALSGTQAEFVAGGEFPIPVP--NDDGITIDYKEYGVQLDFVPYILSDKRINL 58 Query: 331 RIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 ++ VSE +P R A TT+EL G TI +AGLL ++ + Sbjct: 59 KMNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLSENARN 118 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 + +GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + +D Sbjct: 119 VADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFVSPNDV 178 Query: 441 KAFFFNRVNKI 451 + + + ++ Sbjct: 179 EFYLLGKGAEL 189 >gi|120553686|ref|YP_958037.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei VT8] gi|120323535|gb|ABM17850.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei VT8] Length = 572 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 58/306 (18%), Positives = 109/306 (35%), Gaps = 30/306 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--FV 239 + + + + QV L+ I EV + Q G + SS+G + F + G Sbjct: 273 ENYLRKTELIMQRQVVLEAKILEVGLNEGYQQGIDWNDVQSSAGRADYFTSQSLGGQQIR 332 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---- 295 + + F ++ L + ++ L+ P ++ ++ Q A G + Sbjct: 333 TPDIGGLFSATVSAGDFTGLIELLGQQGNVQILSSPRISTVNNQKAVIKVGTDEFFVTDI 392 Query: 296 ---------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 S++ + +T G+ L TP + G I L + VSE Sbjct: 393 DFDDNNSAVTATDSTSTSVELTPFFSGISLDVTPQIAEDGAITLHVHPSVSEVADQEKVI 452 Query: 347 DM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + VR+ D+ + SG +V+ GL+++ + +P S+IP+LG L Sbjct: 453 TIGERDVTLPLARSTVRETDSVIRAESGQIVVIGGLIQNSSEDNNSAVPFFSEIPLLGEL 512 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 F+ F ++E+ I +PV D S + +N K Sbjct: 513 FKQRNFESRKSELVILL-----RPVVANAGQMQAD-VSASRERMNVLRELLNSSESVKPQ 566 Query: 458 SEVEGQ 463 E + Sbjct: 567 PETAPR 572 >gi|195952458|ref|YP_002120748.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1] gi|195932070|gb|ACG56770.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1] Length = 660 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 59/327 (18%), Positives = 114/327 (34%), Gaps = 39/327 (11%) Query: 132 ADSNIRVEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + NI V + ++ L + + S S + + NL+ Sbjct: 327 PNQNINVISSNKPIGSIYLS----------DGTRIGFDRATNSVILYATKSQYENLKNLI 376 Query: 189 NIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------FGGKF 238 E QV + ++ E G G + G + A+ G Sbjct: 377 KKLDEKRIQVLIAASVVEANLTKQLTTGVNWQALGKNGGIGFNPASLQTIYQGLLSGNFV 436 Query: 239 VSEGGDFSVKGVLDR-----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V S+ + L LE+ + ++ P + + + A + Sbjct: 437 VGVTSSSSISANVGGNTIIFPDLAVFLSLLEQGNGFKIISNPKVLTLDNEEAIIKEAQVY 496 Query: 294 LYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVN 344 Y T + + D G+ L PTV + L+ T + + Sbjct: 497 PYVTGTQYNINGFPILTYDYKDIGLELDVIPTVSKDNIRLGINLNLQDITGFTNTNVAGQ 556 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P R ++ V + SG T++L GL+ ++ + GIP+L IP+LG LF+ Sbjct: 557 TVPIPITTDRVLNSEVVVKSGQTVILGGLVSNNTIKNISGIPILQDIPVLGNLFKYQNRE 616 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPD 431 +++ +FI TP+++K + L++ Sbjct: 617 NKKSTLFIFITPYIIK--SPDQLAKIT 641 >gi|220921783|ref|YP_002497084.1| general secretion pathway protein D [Methylobacterium nodulans ORS 2060] gi|219946389|gb|ACL56781.1| general secretion pathway protein D [Methylobacterium nodulans ORS 2060] Length = 784 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 130/284 (45%), Gaps = 19/284 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILK 211 R V +S + S + KKV L A QV + VTIAEVR + Sbjct: 469 PGARGRGVAISADPANNSVITYADGDTYKKVYAALRRLDATPAQVAVNVTIAEVRLNDQL 528 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--------ETVLHAL 263 + G Q+ + S G K+ + FG + G +V F+F + V+ AL Sbjct: 529 KYGVQYFLDSSRIGLGKNKGS-FGLVSAAATGATNVLKPGAGFNFLVGGYSGPDVVISAL 587 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVL 316 + T ++ L+ P+L + Q A+ G T + + V D G++L Sbjct: 588 DGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQSIDYANAPLINQVEFRDTGIIL 647 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 + P + + ++I+ E+S V G + P+ R+ +T+ + +G T++LAGL+ D Sbjct: 648 NVIPRIGQNDAVTMQIEQEISAVVGGSDTLT-PTISKRRVASTISVANGQTVLLAGLISD 706 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 Q+ ++GIP L+++P +G LF ++ E TE+ + P +V+ Sbjct: 707 KHQRERDGIPFLNRLPQIGQLFSSTDNGAERTELVVFIRPVVVR 750 >gi|171318827|ref|ZP_02907964.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5] gi|171095968|gb|EDT40901.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5] Length = 775 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 96/275 (34%), Gaps = 39/275 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 V++ L+ QV ++ I E+ +G Q + + G Sbjct: 393 SVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSIIN 451 Query: 236 ---------------GKFVSEGGDFSVKGVLDRF-------SFETVLHALERATAIRTLA 273 G S G S + +L + L+ Sbjct: 452 LTAGGVANAAGGITGGGLASNLGSLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLS 511 Query: 274 EPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 P L + + A G + ++S + D G+ LH P + Sbjct: 512 TPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDG 571 Query: 326 GRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + L++ TE S NA P++ R +T+ +G IVL GL++D+ Q Sbjct: 572 GILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSK 631 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP +G LFR+ R++T + + P ++ Sbjct: 632 VPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 666 >gi|89901694|ref|YP_524165.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89346431|gb|ABD70634.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 710 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 41/264 (15%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS----------------------ITGSSSGPSKSFA 231 QV ++ I E K +G + G+S G + + + Sbjct: 444 RQVLIEARIVEASDTFGKSLGVKLGGNDLRAQRGGDGGYQLSGDNRVAFGTSYGNAVASS 503 Query: 232 ADFG----------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 G G + S+ L ALE + ++ P Sbjct: 504 GAGGVVDLTSNFVNLPAVGQGGYNPATFALSIFSSAANRFLNLELSALEADGKGKVVSSP 563 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + A G + Y+ V+SS+GAT++ + L TP + G I L + Sbjct: 564 RVVTADQIKALIEQGTELPYQ-VASSSGATAIAFRKANLKLEVTPQITPEGNIILD--LD 620 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V++ +G + + + T V + +GGT+V+ G+ + + +P L +P +G Sbjct: 621 VNKDTVGQSTAAGFAINTKHIKTQVLVENGGTVVIGGIFELTESDNETKVPFLGDLPGVG 680 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF+ + E+ + TP +V Sbjct: 681 NLFKTRGRVSNKQEMLVFITPKVV 704 >gi|21244106|ref|NP_643688.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str. 306] gi|21109733|gb|AAM38224.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str. 306] Length = 633 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 97/263 (36%), Gaps = 33/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------------SS 224 DQV ++ I + +G + I G + Sbjct: 365 RPVDQVLIESRIVIATDTFARDLGARFGIAGRRQYGDNTAVISGSSTNNVSVINDGLHNV 424 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 +F G + G + + F+ + L A++ ++ P + + + Sbjct: 425 PSGLNFNLPAGTFTTNTAGSIAYTLLGRNFALDMELSAMQEEGRGEVVSNPRIVTANQRE 484 Query: 285 ASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 G + + + +V + + L TPT+ + R+ L + + E Sbjct: 485 GVIKQGREIGYVTISGGGTGGQSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 544 Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 +N G +P R+ +T V + G T+V+ G+ + + ++ +P L IP LG L Sbjct: 545 RFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFNDRESVAKVPFLGDIPFLGNL 604 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F+ ++E+ E+ + TP +++ Sbjct: 605 FKKRGRSKEKAELLVFVTPKVLR 627 >gi|260428676|ref|ZP_05782654.1| general secretion pathway protein D [Citreicella sp. SE45] gi|260420270|gb|EEX13522.1| general secretion pathway protein D [Citreicella sp. SE45] Length = 320 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 13/274 (4%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQ 216 + +++ + + +++ +L QV L+ TIAEV + +G + Sbjct: 44 QTYKVAADTSRNALIVRATQEEHREITAMLRDLDTAARQVLLEATIAEVTLNDELNVGVR 103 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 S + G G +L R L+AL T ++ ++ PT Sbjct: 104 WYFQNGDVATRFSDLENGGVAGNYPG----FSAILSRGGANVALNALAAVTDVKVISSPT 159 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGL 330 L + Q G Q +SS T V D G++L P + + G + L Sbjct: 160 LMVVDNQEGLLQIGDQVPIARQTSSEANADAVVLTQVEYRDTGIILKVRPRIGADGAVNL 219 Query: 331 RIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 +I+ EVS+ + D P+ RK T L G T+ L GL+++ + + +P L Sbjct: 220 KIEQEVSDVSATRTSGIDSPTISTRKVSTHAVLADGQTLTLGGLVQERDNKTRAEVPGLG 279 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 ++P++G LFR ++ TE+ I P +V A Sbjct: 280 RVPVVGTLFRAKDNAKDRTELIIMIRPRVVHNAA 313 >gi|239814151|ref|YP_002943061.1| type IV pilus secretin PilQ [Variovorax paradoxus S110] gi|239800728|gb|ACS17795.1| type IV pilus secretin PilQ [Variovorax paradoxus S110] Length = 714 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 58/279 (20%), Positives = 103/279 (36%), Gaps = 41/279 (14%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------ 219 ++ L+I QV ++ I E K +G + Sbjct: 439 LIQKLDIPVR-QVLIEARIVEASDTFGKSLGVRLGGGISRERVASANGNPAYGTFGVMPV 497 Query: 220 -----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERA 266 ++ + A G + G F++ S + ALE Sbjct: 498 TTAAGGVGGATATWTNSNFINLPAGDAGGTGNAPGTFAISLFNSSLSRMLNLEISALEAD 557 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + ++ P + A G + Y+ +SS GATS++ + L TP + G Sbjct: 558 GKGKLVSSPRVITADQTKALIEQGEEIPYQQATSS-GATSISFRKAVLKLEVTPQITPEG 616 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L +VS+ GVN P+ + T V + +GGT+V+ G+ + + +P Sbjct: 617 NIIL--TLDVSKDARGVNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRVP 674 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +L ++P LGALFR +TE+ + TP ++ Sbjct: 675 VLGEVPYLGALFRKRERVANKTEMLVFITPKMITDRNAA 713 >gi|253701597|ref|YP_003022786.1| type II and III secretion system protein [Geobacter sp. M21] gi|251776447|gb|ACT19028.1| type II and III secretion system protein [Geobacter sp. M21] Length = 870 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 75/422 (17%), Positives = 151/422 (35%), Gaps = 74/422 (17%) Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 D + + T+ ++ K + + + L L + D +R + I Sbjct: 241 LDKKILNESTIIIYPKTPDK-----VKQYEELFLQTFYLNKLDAKKAVNLVRTMLQVKKI 295 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V ++ +VL D +E++ L + V Sbjct: 296 YVNEEANALVLR-------DKPEVIEVARKILEANDVPDAE------------------V 330 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242 L+V + E+ + + G S +S G + + G F+++ Sbjct: 331 LLEVEVFELSKQNAETFGLLLSRYATSMGVTGPGSTSGGSPFLADTLGAVTTTTTGTGTA 390 Query: 243 ----------GDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F+++G + + + + TL+ P + + + A F G Sbjct: 391 TTSAQPSNLLNVFNLRGYNGYLTVPNATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGT 450 Query: 292 QHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGV 343 + T SS + +V D GV ++ PT+ + +++ EVS + Sbjct: 451 RVPITTTSSPSGGGVSVNVQYVDVGVKVNAEPTIQLNNEVAIKLGLEVSSILNEKTIGTD 510 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 A + + R DT + L G T ++ GL++ K + LL IPI+G LF N+ Sbjct: 511 QATTVVTIGTRNLDTVLSLKDGETSIIGGLIQKTQTDSKNKVFLLGDIPIIGPLFSNTSD 570 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 +++TE+ +A TP +V+ V ++D AF+ R ++ + S Sbjct: 571 KKDKTELLLAITPRIVRGV-----------TVPDNDVAAFWSGREDEPSSHQPYSSFMEP 619 Query: 464 NY 465 ++ Sbjct: 620 DF 621 >gi|167834842|ref|ZP_02461725.1| general secretion pathway protein D [Burkholderia thailandensis MSMB43] Length = 749 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 103/295 (34%), Gaps = 36/295 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ I E+ + +G Q + Sbjct: 365 IQADAATNSLIITASDPVYRNLRAVIDQLDFR-RAQVYIEALIVELNSNTAGNLGIQWQV 423 Query: 220 TGS-----------------------SSGPSKSFAADFGGKFVSEGGDFSVK---GVLDR 253 ++G S A S +V + Sbjct: 424 ASGALLAGTNLAATAGTIAGNSIINLTAGNGTSTGAGVAANLASLNQGLNVGWLHNMFGV 483 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----- 308 +L + L+ P L + + A G T S S + T Sbjct: 484 QGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTNNAFN 543 Query: 309 ---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPS 364 D G+ LH P + G + L++ TE S NA PS+ R +T+ + Sbjct: 544 TYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVETSTQNAVTGPSFTKRSIQSTILADN 603 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G IVL GL++D Q +PLL IP LG LFR+ R++T + + P ++ Sbjct: 604 GEIIVLGGLMQDSYQVANSKVPLLGDIPWLGQLFRSESKQRKKTNLMVFLRPVII 658 >gi|262401512|ref|ZP_06078079.1| MSHA biogenesis protein MshL [Vibrio sp. RC586] gi|262352227|gb|EEZ01356.1| MSHA biogenesis protein MshL [Vibrio sp. RC586] Length = 556 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 96/263 (36%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247 QV L+ I EV Q G + +S+G + K S +V Sbjct: 270 RMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISKDASGNPISAVLPG 329 Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 330 LDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEFY 389 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344 T SS + ++T G+ L TP + G + L + V E Sbjct: 390 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 449 Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 450 IVYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 509 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 510 LFRNTTKLTQKTELVILLKPTVV 532 >gi|258627001|ref|ZP_05721799.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603] gi|262172506|ref|ZP_06040184.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451] gi|258580675|gb|EEW05626.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603] gi|261893582|gb|EEY39568.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451] Length = 558 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 97/263 (36%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247 QV L+ I EV Q G + +S+G + + + S +V Sbjct: 272 RMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGSGTISQDSSGNPISAVLPG 331 Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 332 LDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 391 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 T SS + ++T G+ L TP + G + L + V E Sbjct: 392 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKR 451 Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 452 ITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 511 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 512 LFRNTTKLTQKTELVILLKPTVV 534 >gi|326794354|ref|YP_004312174.1| type III secretion outer membrane pore, YscC/HrcC family [Marinomonas mediterranea MMB-1] gi|326545118|gb|ADZ90338.1| type III secretion outer membrane pore, YscC/HrcC family [Marinomonas mediterranea MMB-1] Length = 713 Score = 163 bits (412), Expect = 7e-38, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 83/227 (36%), Gaps = 9/227 (3%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + I ++ R+ L ++GF SG +++ G + G + + D Sbjct: 329 IEIDAIILDIDREKLSELGFNWQ---GGSGNTEAKINTSGADPFLKSGSSATVTIQDFDH 385 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + ALE +A P++ I Q A K+ +V+ G Sbjct: 386 FFAQIRALETDGDASLVANPSILTIENQPAIIDFNNTAFIKST--GERVANVSEITAGTS 443 Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P ++ I L + E + + D PS T + + ++V+ G Sbjct: 444 LQVLPRLIDSEAERVIQLFLDIEDGDI-ESNSGADTPSVSKGSISTQAVIKTERSLVIGG 502 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + Q + +PLL +P +G LF + + E TP LV Sbjct: 503 FKVEQNTQRESKVPLLGDLPGIGKLFSYTSKAHSKRERLFIITPRLV 549 >gi|258623356|ref|ZP_05718360.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573] gi|258584322|gb|EEW09067.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573] Length = 554 Score = 163 bits (412), Expect = 7e-38, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 96/263 (36%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247 QV L+ I EV Q G + +S+G + + S +V Sbjct: 268 RMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISQDSSGNPISAVLPG 327 Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 328 LDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 387 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 T SS + ++T G+ L TP + G + L + V E Sbjct: 388 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKR 447 Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 448 ITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 507 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 508 LFRNTTKLTQKTELVILLKPTVV 530 >gi|119475553|ref|ZP_01615906.1| Type II secretory pathway, component PulD [marine gamma proteobacterium HTCC2143] gi|119451756|gb|EAW32989.1| Type II secretory pathway, component PulD [marine gamma proteobacterium HTCC2143] Length = 558 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 63/303 (20%), Positives = 112/303 (36%), Gaps = 26/303 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 VL G ++ +R + + + ++++ +N + QV L+ I EV Sbjct: 231 VLVGT----EEGRRVIVTPQAGIIIVRAMPAEIDAAREFLNRAEVIMRRQVVLEAKILEV 286 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHAL 263 + Q G Q G + + G VS + F V+ L Sbjct: 287 ELNDGYQTGIQWESMGGTLNGNTLDFGVSGSSPVSSNSVGGAFSAVYESVGDFSGVIELL 346 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----------TGATSVTTHDY 312 E +++ L+ P ++ ++ Q A G + T S+ +T Sbjct: 347 ETQGSVQVLSSPRISTVNNQKAVIKVGTDEFFVTEISNSTTTSTGATTSNPEIELTPFFS 406 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE-------PVIGVNAGDMPS--YRVRKADTTVELP 363 G+ L TP + I L I +SE +G ++P +R+ D+ V Sbjct: 407 GIALDVTPQISDNDEIILHIHPSISEVRDQTKVITLGDQTVEVPLALSTIRETDSIVYAR 466 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SG +VL GL++ G P+L +P +G LF R + E+ I P ++ P Sbjct: 467 SGQVVVLGGLMQTKSVDNNSGTPVLGNLPGVGHLFSQQRNKTVKNELVILLRPVIMGPSG 526 Query: 424 MRD 426 + D Sbjct: 527 LPD 529 >gi|167584994|ref|ZP_02377382.1| general secretion pathway protein D [Burkholderia ubonensis Bu] Length = 777 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 49/297 (16%), Positives = 100/297 (33%), Gaps = 38/297 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + V++ L+ QV ++ + E++ +G Q + Sbjct: 368 IQADAATNSLIITAPDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSGNLGIQWQV 426 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS-------------------------VKGVLDRF 254 ++ + + G ++ + Sbjct: 427 ANNALFAGTNLPSGASISGAGLGNSIIDLTGRAATSPLTAVSALTPGLNIGWLRNMFGVQ 486 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATS 306 +L ++ L+ P L + + A G T + + Sbjct: 487 GLGALLQYFAGSSDANVLSTPNLITLDNEEAKIVVGQNVPIPTGSYSNLTSGTGGNAFNT 546 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTE----VSEPVIGVNAGDMPSYRVRKADTTVEL 362 D G+ LH P + G + +++ TE V V P++ R +TV Sbjct: 547 YDRRDVGLTLHVKPQITDGGILKMQLYTEDSSVVQSTVSTSANSPGPTFNKRSIQSTVLA 606 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G IVL GL++D+ +PLL IP +G LFR+ +R++T + + P ++ Sbjct: 607 DNGEIIVLGGLMQDNYNTSNSKVPLLGDIPWIGQLFRSESKSRQKTNLMVFLRPVII 663 >gi|254254052|ref|ZP_04947369.1| Type II secretory pathway component HofQ [Burkholderia dolosa AUO158] gi|124898697|gb|EAY70540.1| Type II secretory pathway component HofQ [Burkholderia dolosa AUO158] Length = 735 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 78/461 (16%), Positives = 156/461 (33%), Gaps = 60/461 (13%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MR QR + + P ++ I + ++ ++ + Sbjct: 185 MRASQRRQ------SVRPQLSDALRKPVSLNFKQQPMSNIFDVISRVSGVNFVFDRDVDT 238 Query: 61 QVPVD-VQDVLVSDPTK--------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ--- 108 P + + + V T+ ++ Sbjct: 239 SQPATLFAERTTAQDAINLLLRTNQLEKKVLDKHTLLVYPSQP--------DKRRNYTEF 290 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + L D + LR+ I ++ V+ + +VL T+Q + Sbjct: 291 AVRTFFLSHADAKSVMAALRQIIKPKDVYVDERVNAIVLRDTPDTVQVA----------- 339 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 ++V+ L+I + VTL V + EV + +G Q+ S + Sbjct: 340 -------------ERVVMGLDIPQSE-VTLDVQVLEVNMNDSLDLGVQYPGKLQFSALAG 385 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + + + + + + L++ RTLA P + + + AS Sbjct: 386 ADGGALTLGDLLRLNRDRIGVSSESGALSMAIDLLQKQGKTRTLANPKIRVRNMEKASIK 445 Query: 289 SGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGV 343 G + T +++ G SV+ D G++L P + + +++ EVS Sbjct: 446 IGERVPIVTTTNANGVVTESVSYQDVGLMLKVEPRISLDDEVSVKVNMEVSSILSKETTK 505 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 S R A+T + +G T +LAGL+K + G+P +S +PI+G LF + Sbjct: 506 TGLVAYSLGTRNAETLMTARNGQTQILAGLVKRNETDNASGLPGVSGLPIVGRLFGSHGR 565 Query: 404 NREETEIFIAATPFLVK----PVAMRDLSRPDDHYSVEDDA 440 + + +EI + TP + + P++ V DA Sbjct: 566 SHDRSEIVLLITPHIERNLDLPMSAVTTFLSGTETRVTTDA 606 >gi|124514518|gb|EAY56031.1| putative type II secretion system protein D [Leptospirillum rubarum] Length = 610 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 62/365 (16%), Positives = 117/365 (32%), Gaps = 47/365 (12%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 +E TLR+ I + + + + TV + G V+ + +QR +++ L Sbjct: 271 DKMEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIVRDQL------------ 318 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAADFGGKFV 239 +V ++ IAE+ G + + + G Sbjct: 319 ------------RREVFFRIDIAEIDLTDKDAYGINWNALAHGVFNSTLALTGAGAGNAG 366 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 F V+ ALE + + +P + +SGQ S + Y Sbjct: 367 LASTGGVTTPYGASFGSAAVIQALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQGE 426 Query: 300 S----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------G 342 + + G+ L TPT L ++ + V+ G Sbjct: 427 YPFFAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQVHMHGTVVVNSLQQFVTIDIKG 485 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + P R T + G T+V+ GL+ + + +P L +IP+L LF Sbjct: 486 IGTFQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWSVPFLGQIPVLKWLFSGYS 545 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP-DDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + ++ TE+ + TP + + LS P + D ++ + V Sbjct: 546 YKKQVTELVVIITPEIRR---TPRLSSPRTGDFLNPDSPVYRKSLPGSRPFSVPRLPRVP 602 Query: 462 GQNYK 466 G Sbjct: 603 GYGSN 607 >gi|288818949|ref|YP_003433297.1| putative type IV pilus biogenesis protein [Hydrogenobacter thermophilus TK-6] gi|288788349|dbj|BAI70096.1| putative type IV pilus biogenesis protein [Hydrogenobacter thermophilus TK-6] gi|308752535|gb|ADO46018.1| type II and III secretion system protein [Hydrogenobacter thermophilus TK-6] Length = 592 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 105/264 (39%), Gaps = 38/264 (14%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS----------ITGSSSGPSKSFAADFGGKFV--- 239 QV ++ I EVR L+++G + +G + + Sbjct: 330 PVQVKIEARIVEVREQALRELGINWNVLLSQARVPQFWQGGAGQGANIGVAPAPGTIFVP 389 Query: 240 --------------------SEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLT 278 + GG F+ + L ALER I+ +A+PT+ Sbjct: 390 PDPTSVGPRSPIYYTPGLSQTPGGIFAFSYQKGMLNALNLRLSALERIAMIKNIAKPTVV 449 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ++ Q A+ G Q Y+T + GA ++ D + L TP V GRI L + Sbjct: 450 TVNAQKATIKQGVQIPYQTTVVAGGAQAANIQFKDVVLQLDVTPVVSPDGRILLD--INL 507 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 G P+ ++A T V + G T+V+ G++ + + EG+P L ++P+L Sbjct: 508 KRDTPGEQTPQGPAINTKEASTKVVVNDGDTLVIGGIIDNQETKTNEGLPGLVRVPVLKW 567 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LF + ++E+ I TP LV+ Sbjct: 568 LFGQESSQKIQSELLIFLTPVLVR 591 >gi|15642863|ref|NP_227904.1| comE protein, putative [Thermotoga maritima MSB8] gi|4980577|gb|AAD35182.1|AE001695_8 comE protein, putative [Thermotoga maritima MSB8] Length = 1285 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 74/395 (18%), Positives = 149/395 (37%), Gaps = 45/395 (11%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---DVVVHSPRTMY 88 A A + EI IS+ V + + + + A + + S Y Sbjct: 931 AEDAPLYDLLEEIASELGISVMF-------VSIPSEKITMKADNVAWEKFIDLISQNYGY 983 Query: 89 LFGKNVGQANVILIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 LF G V ++ + + + + ++ + + V+ +++ +V+ Sbjct: 984 LFDNKNG---VYVVSKPKQDLARRYIYDVPHNFDQIKALIE--FYGGTVYVDSLNNFMVV 1038 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G+ TI ++ L Q+ + I V R Sbjct: 1039 TGISETI-----------------------KRELDNIIEKLK-KPTKQIEISAKI--VDR 1072 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERA 266 ++ ++ + + + + + V++ DF + G + + + Sbjct: 1073 SLIDRLSKETGLELTGENVNVGSSGAEISFSVTDYLDFEKIFGEILNNTLSLQFSDQKTN 1132 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 T LA P + SG+ A G + Y T ++ G V + G+ L TP V S Sbjct: 1133 TLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDD 1192 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L + + SEP +N ++P R R+A T + + +G TI + GL+++ + +P Sbjct: 1193 TIELDLFVKASEPGNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLP 1250 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L +P++G FR N+E+ ++ I T +V+P Sbjct: 1251 FLGDLPVIGQFFRTKSENKEKRDLVIFLTVRVVEP 1285 >gi|119773594|ref|YP_926334.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B] gi|119766094|gb|ABL98664.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B] Length = 561 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 26/252 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGKFVSEGGDFS 246 QV L+ + EV Q G Q + G++ + A + G +S Sbjct: 286 RQVILEAKVLEVTLSDGYQQGIQWNKIAGSALADGNTKINFATSAGNEFGNQISSALGGV 345 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---- 302 + F+ +++ L+ + L+ P +TA + Q A G + T SST Sbjct: 346 TSLSIIGSDFDAMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGKDEYFVTDVSSTTVAG 405 Query: 303 ------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---------D 347 +T G+ L TP + G + L + V + Sbjct: 406 TTPVTSPEVELTPFFSGIALDVTPQIDGQGNVLLHVHPSVIDVKEQTKTIKISNSDLELP 465 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + +R++DT ++ SG +V+ GL+K + +L +PLL IP LG F N + + Sbjct: 466 LAQSEIRESDTVIKAMSGDVVVIGGLMKSESLELVSKVPLLGDIPFLGEAFTNRSQSVRK 525 Query: 408 TEIFIAATPFLV 419 TE+ I P +V Sbjct: 526 TELVILLKPTVV 537 >gi|262164147|ref|ZP_06031886.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223] gi|262027675|gb|EEY46341.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223] Length = 558 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 96/263 (36%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247 QV L+ I EV Q G + +S+G + + S +V Sbjct: 272 RMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISQDSSGNPISAVLPG 331 Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 332 LDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 391 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 T SS + ++T G+ L TP + G + L + V E Sbjct: 392 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKR 451 Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 452 ITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 511 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 512 LFRNTTKLTQKTELVILLKPTVV 534 >gi|288572884|ref|ZP_06391241.1| general secretion pathway protein D [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568625|gb|EFC90182.1| general secretion pathway protein D [Dethiosulfovibrio peptidovorans DSM 11002] Length = 659 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 87/514 (16%), Positives = 161/514 (31%), Gaps = 85/514 (16%) Query: 20 NPSVAKLPPIKEANAAVINISDVE------IGKGKKISIGLNKVIILQVPVDVQDVLV-- 71 +P A+ A V+ I E G + +N + L VP ++ + Sbjct: 160 SPGFAQKAVQPAAGKTVMVIPLDEGNGLLLTGPAADVQRVVNLLRALDVPDGIRRISAVP 219 Query: 72 ---SDPTKADVVVHSPRTMYLFGKNV-----GQANVILIGHDGKQMLNLDILIERDIAHL 123 ++P + + K+ G + L ++ + Sbjct: 220 VKEANPDLL------AQHLANLAKDPTGPFRGLTAL-----SDSSSRTLLLVGDSSALES 268 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + + + E + + + + ++ Sbjct: 269 AKKIVKRLDVPPVSGEFHVYRLKNADAQEVAKQLSQILGVAARLQPGKEGAMPTTVVPDI 328 Query: 184 VMNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 N L A QV ++ IAEV LK G + G Sbjct: 329 PTNSLIFAVQEQQYAGLIDIIKQLDIQPKQVMVRGLIAEVNLTNLKNAGIDWATWGGQVS 388 Query: 226 PSKSFAADFGGKFVSEGGDFSV---------------------------KGVLDRFSFET 258 S FAA+ + V Sbjct: 389 GSTVFAANAALGGSTGVPSTFVDWFQDLSKKETYEWITPETGEPYREKTTVYEGNSLIYA 448 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------GATSVTTHDY 312 + L++ A+ L+ P L + +S G S+S S D Sbjct: 449 YVQLLKKYDAMNILSMPRLMCTDNKESSLMVGQTIPQMKASTSDISNPSSVQNSYDYKDT 508 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G+ L TP + S + L I+ +E V+ P R+ T+V++ +G TI+L G Sbjct: 509 GLKLKITPHIRSGNLVALDIEQS-TEEVLSAMTSTTPVTAKREVKTSVQVRNGETIILGG 567 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 LLK+ + LK+ +P+LS IP++G LF++S RE+ E+ + TP++ + + + Sbjct: 568 LLKETEKSLKQRVPILSYIPLVGELFKSSTNQREKIELMVFLTPYI---LETPEAATEAS 624 Query: 433 HYSVEDDAKAFFFN---RVNKIYGPKEASEVEGQ 463 D R+N+ + V+ Q Sbjct: 625 KAVAASDTDLGLSEAEIRLNRRFQEMYREAVKKQ 658 >gi|94266027|ref|ZP_01289748.1| type II and III secretion system protein [delta proteobacterium MLMS-1] gi|93453422|gb|EAT03844.1| type II and III secretion system protein [delta proteobacterium MLMS-1] Length = 577 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 19/257 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ ++ L QV ++ I EV + G + S G + + Sbjct: 321 EEYLDNLQQQLFRQVIIEAKIIEVTLSDEHRSGIDWTNVLSGKQLDFELFGPDGIIYHPD 380 Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + + FE +L A+E L+ P ++ ++GQ A G Y Sbjct: 381 RDQRGRGVSQISIGPNPFELLLEAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAE 440 Query: 299 SSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--------- 342 +SST T G+ + P ++ I L + ++ G Sbjct: 441 ASSTIQDQGVTHNIITGTVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGD 500 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +P +R+ T V + +G T+++ GL+ + + +PLL IP LG LFR+ Sbjct: 501 NMLVQLPQINIREMQTMVRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDT 560 Query: 403 FNREETEIFIAATPFLV 419 ++E+ E+ I P ++ Sbjct: 561 RSKEKKELVIMLRPRIL 577 >gi|291613156|ref|YP_003523313.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans lithotrophicus ES-1] gi|291583268|gb|ADE10926.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans lithotrophicus ES-1] Length = 614 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 59/328 (17%), Positives = 124/328 (37%), Gaps = 44/328 (13%) Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK------VMNLLNIAGE 193 S + T+Q + + ++ +++++ ++ + A Sbjct: 260 TGSGNEDVSSQASTVQQTGKYEPAVNVNANKETGVLIVRATARQHKKIQEFIDKVMTAAR 319 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV ++ TIAEV Q G S G S G + Sbjct: 320 RQVLIEATIAEVTLSRNYQQGINWSALALGGKGFSLTQLATAGLPSSNTGSMVTLAYNNA 379 Query: 254 F----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT- 308 + + L+ ++ L+ P L+ ++ Q+A+ +Y T++ + G+T+ T Sbjct: 380 TSKVGNLSGAVQLLDSFGDVKVLSSPKLSVMNNQTATLKVVDNKVYFTITVTPGSTNGTI 439 Query: 309 -----------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------------- 344 G ++ TP + + + ++ ++ + VN Sbjct: 440 VTPPTFSTTAVPVAVGFTMNVTPEINDSDYVTINVRPTITRIIDYVNDPNPNLANPCGTG 499 Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 +P R R+ ++ + + SG VL GL++D+I +G+PLL +IP +G Sbjct: 500 VTSCAVAAIVNRVPEIRTREMESIIRVSSGQIAVLGGLMQDEINNQSDGVPLLDEIPGIG 559 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA 423 +LF+N + +TE+ I P ++K + Sbjct: 560 SLFKNRNDTKTKTELVIFLRPVIIKDAS 587 >gi|157963580|ref|YP_001503614.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC 700345] gi|157848580|gb|ABV89079.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC 700345] Length = 556 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 55/249 (22%), Positives = 94/249 (37%), Gaps = 23/249 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252 QV L+ + EV Q G +G + + + ++ GV Sbjct: 284 RQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDISFGTSPAAGLGDTITNALGGVTSI 343 Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----------TVS 299 F T++ L+ + L+ P +TA + Q A G + Sbjct: 344 KLEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGNTP 403 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------- 352 +T +T G+ L TP + G + L I V + V + + Sbjct: 404 VTTPEVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQVKSIKIADSTLELPLAQ 463 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT ++ SG +V+ GL+K + +L +PLL IP LG F N + +TE+ Sbjct: 464 SEIRESDTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPFLGEAFTNRANSTVKTEL 523 Query: 411 FIAATPFLV 419 I P +V Sbjct: 524 VILLKPIVV 532 >gi|134294193|ref|YP_001117928.1| general secretion pathway protein D [Burkholderia vietnamiensis G4] gi|134137350|gb|ABO53093.1| general secretion pathway protein D [Burkholderia vietnamiensis G4] Length = 774 Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 102/293 (34%), Gaps = 34/293 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ I E+ +G Q + Sbjct: 375 IQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQV 433 Query: 220 TGSSSGPSKSFAADFG------------GKFVSEGGDFSVKGVLDRFS------------ 255 + G + G ++ + + Sbjct: 434 ASGQFLGGTNLNPTSGLGNSIVNLTAGTAGATTPGLAANLGTLTQGLNIGWLHNLFGVQS 493 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSV 307 +L + L+ P L + + A G + ++S + Sbjct: 494 LGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYLNLTSGTTSNAFNTY 553 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGG 366 D G+ LH P + G + L++ TE S V +A P++ R +T+ +G Sbjct: 554 DRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVAGTTSAQTGPTFTKRSIQSTILADNGE 613 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IVL GL++D+ Q +PLL IP +G LFR+ R +T + + P ++ Sbjct: 614 IIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRAKTNLMVFLRPVII 666 >gi|253996449|ref|YP_003048513.1| type II and III secretion system protein [Methylotenera mobilis JLW8] gi|253983128|gb|ACT47986.1| type II and III secretion system protein [Methylotenera mobilis JLW8] Length = 659 Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats. Identities = 78/425 (18%), Positives = 157/425 (36%), Gaps = 51/425 (12%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-- 79 S K P E + IGK I+ ++ + + V D D Sbjct: 188 SAFKKPITLEFKNVSVRSVFEFIGKAANINFSYDQELR---DNQRTSIFVRDTPIEDAIQ 244 Query: 80 VVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAHLEMT-----LRRFIAD 133 V+ + + K V +++ Q + + ++ ++ + Sbjct: 245 VILTTNQL---AKKVLNDNTLLIYPVSRSQEYQELYVRSFYLNSIDAKRAMNLIKTVLKS 301 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 ++ ++ +T+V+ +I E++E ++ + Sbjct: 302 KDVYIDEKLNTLVMRDTAESI-------EIAEKLIASQDLIEPE---------------- 338 Query: 194 DQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 V L+V + E+ R L+ IG ++ + G +S S S Sbjct: 339 --VMLEVEVMEINRRSLENIGVRYPSQVSVGVQGKTSSNGVSTNTPGRLSLAELKNFNSG 396 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---A 304 GV L+ L + T LA P + + + A G + T +++ + Sbjct: 397 LGVFTISDPVLALNLLHQDTDTNLLANPQIRVKNREKAKIHVGDKIPVFTSVANSTGFVS 456 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVE 361 +V + G+ L PT+L ++ +++ EVS + R A+TT++ Sbjct: 457 QTVNYLEVGIKLDVEPTILLQDQVNIKVGLEVSNITDQVKTDTGVLAYTIGSRNANTTLQ 516 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L +G T +LAGL +DD Q + +P LS +P +G LF + ++ + EI + TP ++ Sbjct: 517 LKNGETQILAGLFRDDGQNISNKVPGLSSLPFIGRLFTDKNNDKRKNEIVLLITPRILHN 576 Query: 422 VAMRD 426 +A + Sbjct: 577 IAPAN 581 >gi|298529582|ref|ZP_07016985.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans ASO3-1] gi|298511018|gb|EFI34921.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans ASO3-1] Length = 569 Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 99/264 (37%), Gaps = 14/264 (5%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + + + S +++ L++ E QV ++ + +++G Sbjct: 312 RVTQDARTNTLIVRDTPSQLEEITQLIDNLDRPERQVLIEARVVYATESFRRELGVDWGF 371 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-----RFSFETVLHALERATAIRTLAE 274 S G + + F S+ G + E L E T++ Sbjct: 372 AYQSPGLDSNIISPDTFNFPSDLEGLLGVGYMGHEGQSFSVLEARLRLGESQGKSNTISA 431 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + ++ Q A G + V + T + L TP + + L Sbjct: 432 PQIMTLNNQEAKIE-QGTDVAVDVIDADLRTRREYVPATLELIVTPQITPDNNLIL--NL 488 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS+ G V+KA+TT+ G TIV+ G+ K Q + GIP LS++PIL Sbjct: 489 EVSDNAPGEGGN----IEVKKAETTLFAEDGETIVIGGIKKLSESQRETGIPPLSRLPIL 544 Query: 395 GALFRNSRFNREETEIFIAATPFL 418 G LF++ E+ I P + Sbjct: 545 GWLFKHELVEENMDELLIFIRPKI 568 >gi|288942750|ref|YP_003444990.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180] gi|288898122|gb|ADC63958.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180] Length = 787 Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 106/285 (37%), Gaps = 49/285 (17%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223 +V+NLL++A QV ++ + + +G + ++GS Sbjct: 499 RVVNLLDVAVR-QVMIESRVVIANNSFARDLGVRFGVSGSMGKVGDNEVLIGGGQNGYLA 557 Query: 224 --------SGPSKSFAADFGGKFVSEGGDFSVK--------------------GVLDRFS 255 G + S + + G+ ++ G + + Sbjct: 558 VGDYDSGPFGLNASTGTPYNSTLTDDAGNATLITNLPATTIQDAASGSIDFLIGKVGSYL 617 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + L A++R ++ P + A+ G + Y+ S G TS+ + + Sbjct: 618 IQLELSAMQREGRGEIISSPRVITADKNKATIKVGSEIPYQ-EQSGQGNTSIAFKEAVLQ 676 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + RI + ++ P + + P R T V + +G T+VL G+ + Sbjct: 677 LDVTPQITPDDRIIMDLEVRKDRPDWSRSINNTPPIDTRSVKTNVVIDNGETVVLGGVFE 736 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + KE +P L +P+LG LF+ TE+ I TP ++K Sbjct: 737 REKTFSKEQVPWLGDVPVLGRLFKQEARQDSNTELLIFVTPKILK 781 >gi|154249944|ref|YP_001410769.1| type II and III secretion system protein [Fervidobacterium nodosum Rt17-B1] gi|154153880|gb|ABS61112.1| type II and III secretion system protein [Fervidobacterium nodosum Rt17-B1] Length = 1519 Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 90/239 (37%), Gaps = 9/239 (3%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 V++ I + R+ + + S + + + Sbjct: 1277 TTPKIVSIDARIIDESRNGSLSEEIVTLLKAGNYLTFGSNGLTLNVSLLDILDGSIIDKI 1336 Query: 251 LDRFSFETVLHALER-------ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 L+ L E+ + + LA P + SG+ A G K VS+S G Sbjct: 1337 LNEAGISLDLRGAEQGTPFRATSGIGKLLANPNIMTKSGEEARIFIGDSIPLKIVSTSGG 1396 Query: 304 ATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 T+ G+ L P V + I L I T VS V +P R A T + Sbjct: 1397 QTNEQVISLEGGIELKIVPYVNADNTIDLVITTSVSNFDYSVLVNGLPKINKRDASTKIT 1456 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G T+V+ GL +++ + + +P+L IPILG LFR ++ E+ I I T +V Sbjct: 1457 IKDGQTLVIGGLSREEKSKSEWKVPILGDIPILGYLFRGTKEASEQRSITIFLTAKIVD 1515 >gi|94266705|ref|ZP_01290378.1| type II and III secretion system protein [delta proteobacterium MLMS-1] gi|93452646|gb|EAT03209.1| type II and III secretion system protein [delta proteobacterium MLMS-1] Length = 577 Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 19/257 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ ++ L QV ++ I EV + G + S G + + Sbjct: 321 EEYLDNLQQQLFRQVIIEAKIIEVTLSDEHRSGIDWTNVLSGKQLDFELFGPDGIIYHPD 380 Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + + FE +L A+E L+ P ++ ++GQ A G Y Sbjct: 381 RDQRGRGVSQISIGPNPFELLLDAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAE 440 Query: 299 SSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--------- 342 +SST T G+ + P ++ I L + ++ G Sbjct: 441 ASSTIQDQGVTHNIITGTVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGD 500 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +P +R+ T V + +G T+++ GL+ + + +PLL IP LG LFR+ Sbjct: 501 NMLVQLPQINIREMQTMVRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDT 560 Query: 403 FNREETEIFIAATPFLV 419 ++E+ E+ I P ++ Sbjct: 561 RSKEKKELVIMLRPRIL 577 >gi|224373284|ref|YP_002607656.1| general secretory pathway protein D [Nautilia profundicola AmH] gi|223589728|gb|ACM93464.1| general secretory pathway protein D [Nautilia profundicola AmH] Length = 445 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 93/261 (35%), Gaps = 19/261 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + + K +N + +V + V I V + G S + Sbjct: 174 TGTKKQIDAIDKYINTMLNRLTKEVLIDVKIYTVELSKSHKTGIDWSQLSIQLNRTDVPL 233 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + G FS +L+ L + + +L+ P + ++ Q A + G Sbjct: 234 RG------TYIGGAQSVFSDATFSVVGLLNFLAQNGNVNSLSNPKVVTLNNQKAIISVGD 287 Query: 292 QHLYKTVSSSTGATS--------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---- 339 YK S T + + + GVVL TP + G I L I +S Sbjct: 288 TIYYKYASKVTTDQNGNPNTEYTIDSKFVGVVLDITPQISDNGDIILSIAPRISAFKDLT 347 Query: 340 VIGVNAGDMPSYRVRKAD-TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + DMP + V+L T+VL GL+ +D G+P+L +IP++ LF Sbjct: 348 QLSNTTRDMPPDTKDNTMLSVVKLKDNQTLVLGGLITNDKTLQVNGVPVLKEIPLIKYLF 407 Query: 399 RNSRFNREETEIFIAATPFLV 419 + E+ TP ++ Sbjct: 408 SSREEVTSRKELVFVITPHII 428 >gi|114798909|ref|YP_761208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444] gi|114739083|gb|ABI77208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444] Length = 694 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 57/273 (20%), Positives = 101/273 (36%), Gaps = 24/273 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV ++ TI EV +G Q + + + + G S Sbjct: 438 KRQVLIEATIVEVSLTDGTSLGVQWDLVQDRLSATFTDTGSGDLTSLFPGVSVSYI---- 493 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSSTGAT 305 V++AL + + ++ P + ++ ++A G Q + + Sbjct: 494 NTDIAAVINALAATSDVEIVSSPRMLVLNNETARLQVGDQVPIITQSAVSVSDPGAPVVN 553 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPS 364 S T D GV+L TP + + G + + I EVS ++ D P+ R + + +P Sbjct: 554 STTYRDTGVILTVTPRIRAGGMVEVDISQEVSGVSETTTSSIDSPTISQRSIQSVLAVPD 613 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T VL GL+ + GIP+L P+LGA FR++ + TE+ + P +V Sbjct: 614 GSTAVLGGLMSSTRSYSRTGIPILKDTPVLGAAFRSTNQSERRTELIVLIEPTVVVSEEP 673 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 D A + + G Sbjct: 674 S------------SDIPALLRAALVRARGAPAT 694 >gi|285019110|ref|YP_003376821.1| type IV pilus assembly protein pilq [Xanthomonas albilineans GPE PC73] gi|283474328|emb|CBA16829.1| probable type iv pilus assembly protein pilq [Xanthomonas albilineans] Length = 639 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 98/271 (36%), Gaps = 34/271 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-------------------- 222 +++N+++ DQV ++ I + +G + + G Sbjct: 364 ELINVID-RPVDQVLIEGRIVIATDTFARDLGARFGVAGRRSYGSNTGVVSGNLADNSSI 422 Query: 223 ------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + + G G + + FS + L AL+ ++ P Sbjct: 423 LNNSLHNIPNGLNVNLPAGTFTTGNAGAIAYTLLGANFSLDMELSALQEEGRGEVISNPR 482 Query: 277 LTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + + A G + + +V + + L TPT+ R+ L + Sbjct: 483 IVTSNQREAVIRQGKDIAYVTITGGTGGAAATPNVQFKEVLLELKVTPTITDDNRVFLNM 542 Query: 333 QT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EV V N G +P R+ +T V + G T+V+ G+ + + +P L Sbjct: 543 NVKKDEVDHYVTLQNYGTVPEINRREINTAVLVDDGQTVVIGGVYEFTNRNSLAKVPFLG 602 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P LG LF+ ++ + E+ I TP +++ Sbjct: 603 DVPFLGNLFKQRGRSKAKAELLIFVTPKVMR 633 >gi|206561863|ref|YP_002232628.1| type II secretion system protein D [Burkholderia cenocepacia J2315] gi|198037905|emb|CAR53850.1| type II secretion system protein D [Burkholderia cenocepacia J2315] Length = 777 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 98/272 (36%), Gaps = 36/272 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-------------------- 222 V++ L+ QV ++ I E+ Q+G Q + Sbjct: 399 SVIDQLDAR-RAQVYIEALIVELNSTTQGQLGIQWQVASGQFLGGTNLAAAAGNVAGNSI 457 Query: 223 ---SSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPT 276 ++G + S A ++ + +L + L+ P Sbjct: 458 INLTTGTAGSTGAGLAANLSGLNQGLNIGWLHNMFGVQGLGALLQYFSGVSDANVLSTPN 517 Query: 277 LTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G + ++S + D G+ LH P + G + Sbjct: 518 LITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGIL 577 Query: 329 GLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L++ TE S +A P++ R +T+ +G IVL GL++D+ +PL Sbjct: 578 KLQLYTEDSAVVSGTTSAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYAVSNSKVPL 637 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L IP +G LFR+ R++T + + P ++ Sbjct: 638 LGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 669 >gi|120609694|ref|YP_969372.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1] gi|120588158|gb|ABM31598.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1] Length = 715 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 58/336 (17%), Positives = 122/336 (36%), Gaps = 50/336 (14%) Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIA 191 +++ ++ +++ G T S+R ++E +Q + + ++++ L++A Sbjct: 383 ADMVTQLANNSTGSTGT-STRFLSERGSAIAEPRTNQLFVTDTPSKLEEVRQLLSTLDVA 441 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHS--------------------------------I 219 QV ++ I E R + +G + Sbjct: 442 VR-QVMIEARIVEARDTFGRSLGVRLGGADLRANRGGDGGYSVGGNNRLAIGTSYNNAVA 500 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-----------LHALERATA 268 + + G + + G FV+ S F+ L A+E Sbjct: 501 SSGAGGTVATGSDAAGSTFVNLPAALSSGASFGNFALTLFNSAANRFLTLELSAMEADGQ 560 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + ++ P L A G ++ Y + GAT++ + L TP + G I Sbjct: 561 GKVVSSPRLITADQTKALIEQGTEYPYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGNI 619 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L + +V++ G + T V + +GGT+V+ G+ + + + IPLL Sbjct: 620 ILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEETNQENKIPLL 677 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 +P++G LF+N + E+ + TP ++ Sbjct: 678 GDVPVVGNLFKNRTRESTKREMLVFITPKVISDKGP 713 >gi|254483140|ref|ZP_05096374.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2148] gi|214036662|gb|EEB77335.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2148] Length = 727 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 105/282 (37%), Gaps = 13/282 (4%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + G + + + L + + L +A QV ++ +I EV Sbjct: 418 VTGSGDETAEVRVVADDENNSLMIYATSMQYKVIKTALDQLDVVAT--QVIIEASIIEVS 475 Query: 207 RDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 + G + + + S G + S FS + VL+A Sbjct: 476 LTDELRYGLEWTFSNSLGADYDGSGFLSSIAGAESPASIVPGFSYTVTNSIGNVSAVLNA 535 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVV 315 L + + ++ P++ + A G Q + + S+T D GV Sbjct: 536 LAEESLLNIISTPSVMVLDNHYAYIHVGQQVPIIDSQTGSLANDTDRVTQSITYRDTGVK 595 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L P+V + G I + + V++ A ++ R ++ V + S ++VL GL++ Sbjct: 596 LDVRPSVNAGGLITMDVAQSVTDVGEIDAATGQRAFLERNIESRVAVRSNESVVLGGLIR 655 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 ++ +G+P L +PI+G+LF TE+ + TP Sbjct: 656 ENSGTASQGVPWLHSVPIVGSLFGTDSARSNRTELLVIITPR 697 >gi|77918000|ref|YP_355815.1| type II and III secretion system protein [Pelobacter carbinolicus DSM 2380] gi|77544083|gb|ABA87645.1| type II and III secretion system protein [Pelobacter carbinolicus DSM 2380] Length = 537 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 69/334 (20%), Positives = 123/334 (36%), Gaps = 41/334 (12%) Query: 128 RRFIADSNIRVEMVSD-----TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 ++ S I E +D +V L + +D +R V + + + + Sbjct: 170 NAMVSGSRIDTESSADFWTELSVALR-TMVGQEDGRRVVIQPQAGVVVVRALPEELRTIE 228 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------------- 227 + + + + QV L+ I EV Q G S + Sbjct: 229 QYLGTIQGNLQRQVILEAKILEVELGDGYQAGINWSAVNGDVSMAQTRGDIFADNGLADI 288 Query: 228 -KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S A S L+ +F+ + LE ++ L+ P + ++ Q A Sbjct: 289 VGSDGAAVTSGLASGAFGGVFSAALNFKNFQAFIELLETQGDVQVLSSPRIATVNNQKAV 348 Query: 287 FTSGGQHLYKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 G + T SS ++T G+ L TP + G++ L I V Sbjct: 349 IKVGSDEFFVTDVSSDTVTGTTTTTSPDITLTPFFSGIALDVTPQIDPKGKVTLHIHPTV 408 Query: 337 SEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + VR++D+ V SG +V+ GL+KD +Q +PL Sbjct: 409 SEVSDQTKDITVAGETQTLPLAFSTVRESDSIVAAESGQVVVIGGLMKDQLQNRDASVPL 468 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L ++P +GALFR+++ ++E+ I P +V+ Sbjct: 469 LGRLPGVGALFRHTQSVSRKSELVILLRPMVVEA 502 >gi|291286288|ref|YP_003503104.1| type II and III secretion system protein [Denitrovibrio acetiphilus DSM 12809] gi|290883448|gb|ADD67148.1| type II and III secretion system protein [Denitrovibrio acetiphilus DSM 12809] Length = 509 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 19/243 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV ++ + EV + G T S D G + G + G + Sbjct: 267 KQVLIEAKLVEVTLNDTSAYGINWRGTADGKSIGLSLGTDGGAAVLP--GGLTAVGAISS 324 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY- 312 F + + + ++ P + ++GQSA TSG + + T + Sbjct: 325 FDYSDWFAFMAAYGRVESVGNPRIRVMNGQSAMITSGQLKPFWEMERETDDDTDDVTVTY 384 Query: 313 -------GVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRKA 356 G++L TP V G I L I S+ GV P+ +++A Sbjct: 385 TRVTVLDGIMLGVTPHVKEDGTITLNIVPVFSDVEETPEQQLDENGVVVASYPNINLKEA 444 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + L SG T+V+ GL+ + + + +PLL +P LG LF++ ++ E+ I T Sbjct: 445 GTVLNLESGSTVVMGGLISNVETEDETKVPLLGDVPFLGYLFKSKYKYTQKRELVIFLTA 504 Query: 417 FLV 419 ++ Sbjct: 505 TII 507 >gi|317052313|ref|YP_004113429.1| type II and III secretion system protein [Desulfurispirillum indicum S5] gi|316947397|gb|ADU66873.1| type II and III secretion system protein [Desulfurispirillum indicum S5] Length = 683 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 82/454 (18%), Positives = 148/454 (32%), Gaps = 74/454 (16%) Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 P +Y G + + DG +++ + + +L + + + Sbjct: 107 PEALYAVATAAG---LQITSRDGTLVISSNDFRTFTLDYLAQG--AVLPGQSFSPLNSAP 161 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSG------------------RNQYANSSSKKVM 185 V L + QR + LS N A + + Sbjct: 162 -VYLTDSAH-ASERQRIWNVIRENLSSLASEDGRVIINDLTGTILVSDNASAMRRIEAYL 219 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 +++ + QV + V I ++ +G +S SG A + G G Sbjct: 220 DMVRRLYDQQVEISVRILQISLSDSLTMGVDYSALFRVSGSDTPIAFNLHGTEGQAGASL 279 Query: 246 S-----------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 GVL+ F L L + TL+ PT+T ++ + + S + Sbjct: 280 DGTAGERGVLDYTVGVLNPGKFAGFLQFLSLHGTVHTLSNPTITTLNNVTGNVYSIRTYP 339 Query: 295 YKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGV 343 Y+ ++ + T GV L TP +++ G I L + V Sbjct: 340 YQVTTTESSANVREARTYFEDVKIGVSLTVTPNIVNNGDILLEVLPVVGEIYEENFNPAS 399 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + P + T + + + + GL+ + + GIP+LS+IP+LG LFR+ R Sbjct: 400 GEREKPQTVEQAIRTILRTRNNHSYFIGGLIYEKNVESTSGIPVLSRIPVLGRLFRSDRR 459 Query: 404 NREETEIFIAATPFLV---------------KPV--------AMRDLSRPDDHYSVE--- 437 + E+ I TP ++ P+ A D ++ Sbjct: 460 VQSRQELVIVLTPKIIPSLDSHSAGPVDYHSTPLHYGLLEYQAGARAPLALDDHAPPLTN 519 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471 DD FF R G E + + A+GF Sbjct: 520 DDLAYFFLQRGLDALGAGE-NLQALSMLQSALGF 552 >gi|298369928|ref|ZP_06981244.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str. F0314] gi|298281388|gb|EFI22877.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str. F0314] Length = 715 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 54/271 (19%), Positives = 103/271 (38%), Gaps = 30/271 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------- 226 K+++ L++ QV ++ I E + +G + G+ S Sbjct: 444 KLIDELDVPTR-QVMVEARIVEAEEGFSRNLGVKFGAAGAGSRNAWGSNWSNAQNNNNTN 502 Query: 227 -----------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + S + S ++ L + L A E +TL+ P Sbjct: 503 ASFNRGEVGYRTWSLDPNVSLPTASATSSIALVRSLSSGALGLELSASEELGKSKTLSNP 562 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + + A SG + Y+ +SS GATSVT + L TP + G+I + ++ Sbjct: 563 RVLTQDRKEAIIESGTEIPYQEATSS-GATSVTFKKAVLGLTVTPNITPDGQIIMTVKIN 621 Query: 336 VSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 P + + +T + GGT+++ G+ +++ +PLL IP++ Sbjct: 622 KDSPIDCQTDGLRTKCISTKNLNTQAMVEDGGTLIVGGIYEEENSNAVNKVPLLGDIPVV 681 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR 425 G LF++ + E+ I TP ++ V Sbjct: 682 GNLFKSRGRSERRRELLIFITPRIMDGVGSN 712 >gi|257459465|ref|ZP_05624574.1| type II and III secretion system protein [Campylobacter gracilis RM3268] gi|257442890|gb|EEV18024.1| type II and III secretion system protein [Campylobacter gracilis RM3268] Length = 502 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 111/307 (36%), Gaps = 27/307 (8%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 +V+ +G + + + + + L + + + ++ + QV L V I Sbjct: 180 SVLNNGTEKYVAVAPIINQNAG--LVTVTAMKSQIARVDRYLSGMQKRLSRQVLLDVNII 237 Query: 204 EVRRDILKQIGFQHSITGSSSGP---------SKSFAADFGGKFVSEGGDFSVKGVLDRF 254 V + G S S + S+ G F Sbjct: 238 SVELNNEYTTGIDWSKFQLGFNTYVGGDPTKLSGYHIDNGNRGKASDTHGTWTIGANLNF 297 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------- 306 + + +++ LE + ++ P +T ++ Q A + G Y S++TG Sbjct: 298 NIDGLINFLETKGKTKIISSPKVTTMNNQPAIISVGDTINYVLKSTTTGDYQGGDTQSDD 357 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADT 358 + G++L+ P + RI LRI +S + P +K + Sbjct: 358 QYSIFVGILLNILPEISDDNRIMLRINPSLSSLKYAEDNVRKENGRRDIAPDTLQKKLSS 417 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + G T++L GL+ + +P+L++IP++G LF+++ +E+ TP + Sbjct: 418 VVWVDDGDTVILGGLIGATKSKNNTRVPVLAEIPLIGNLFKSTADILSTSELIFVVTPHI 477 Query: 419 VKPVAMR 425 + Sbjct: 478 IDNTGAP 484 >gi|531740|emb|CAA56979.1| xcpQ [Pseudomonas putida] Length = 591 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 102/266 (38%), Gaps = 26/266 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK- 237 ++ + ++ L+I QV ++ IAEV +++G Q G G Sbjct: 276 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 334 Query: 238 -------------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G + F+F +++AL+ + L+ PTL Sbjct: 335 ANIAGAAAGEDTEALGKLLSATAGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 394 Query: 279 AISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + AS G + + T S + ++ + GV L P + + L I Sbjct: 395 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQ 454 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS A D+ R+ T V + G ++L GL+ D++ + +PLL IP L Sbjct: 455 EVSSIADSSAASDV-ITNKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 513 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G LFR+ + + + P +++ Sbjct: 514 GRLFRSDASKNTKQNLMVFIRPRILR 539 >gi|21230145|ref|NP_636062.1| general secretion pathway protein D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769864|ref|YP_244626.1| general secretion pathway protein D [Xanthomonas campestris pv. campestris str. 8004] gi|129748|sp|P29041|GSPD_XANCP RecName: Full=General secretion pathway protein D; Flags: Precursor gi|155391|gb|AAA27615.1| XpsD precursor [Xanthomonas campestris] gi|21111677|gb|AAM39986.1| general secretion pathway protein D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575196|gb|AAY50606.1| general secretion pathway protein D [Xanthomonas campestris pv. campestris str. 8004] Length = 759 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 77/312 (24%), Positives = 124/312 (39%), Gaps = 33/312 (10%) Query: 149 GMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + ++ET + A S + V+ L++ QV ++ IAEV Sbjct: 432 GSVTLEVEGDKVGVSAVAETNTLLVRTSAQAWKSIRDVIEKLDV-MPMQVHIEAQIAEVT 490 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFS 255 Q G + + PS + + + G V + Sbjct: 491 LTGRLQYGVNWYFENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGSVTSNGVAWTFLGKN 550 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTT 309 ++ AL++ T +R L P++ + A+ G + + S +TG +SV Sbjct: 551 AAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQY 610 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKAD 357 D GV+L P V G + L I EVS P A + R+ Sbjct: 611 IDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAACNVDINTRRVK 670 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + +G TI+LAGL+ D GIP LSK+P++GALF N + E+ + TP Sbjct: 671 TEAAVQNGDTIMLAGLIDDSTTDGSNGIPFLSKLPVVGALFGRKTQNSDRREVIVLITPS 730 Query: 418 LVK-PVAMRDLS 428 +V+ P RDL+ Sbjct: 731 IVRNPQDARDLT 742 >gi|167625758|ref|YP_001676052.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis HAW-EB4] gi|167355780|gb|ABZ78393.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis HAW-EB4] Length = 557 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 55/249 (22%), Positives = 96/249 (38%), Gaps = 23/249 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252 QV L+ + EV Q G +G + +S+ + GV Sbjct: 285 RQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDITFGTSPTTGLSDQISSVLGGVTSI 344 Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----------TVS 299 F T++ L+ + L+ P +TA + Q A G + Sbjct: 345 KLEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTNVSSTTVASNTP 404 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMPSYR 352 +T +T G+ L TP + G + L I V + + ++P + Sbjct: 405 ITTPDVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQTKIIKISGSTLELPLAQ 464 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT ++ SG +V+ GL+K + ++ +PLL IP LG F N + +TE+ Sbjct: 465 SEIRESDTVIKAASGDVVVIGGLMKSENTEIVSKVPLLGDIPFLGEAFTNRANSTVKTEL 524 Query: 411 FIAATPFLV 419 I P +V Sbjct: 525 VILLKPIVV 533 >gi|167571805|ref|ZP_02364679.1| general secretion pathway protein D [Burkholderia oklahomensis C6786] Length = 743 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 100/289 (34%), Gaps = 30/289 (10%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ + E+ +G Q + Sbjct: 365 IQADAATNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 423 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--------------------LDRFSFETV 259 ++ + G S + + Sbjct: 424 ANNALYAGTNLTTGGVGGGNSITNLTAGATNPLNVVGALTPGLNIGWLRNMFGIQGLGGL 483 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHD 311 L + L+ P L + + A G T +++ + D Sbjct: 484 LQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRD 543 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVL 370 G+ LH P + G + L++ TE S V G + P++ R +TV +G IVL Sbjct: 544 VGLTLHVKPQITDGGILKLQLYTEDSSVVNGTLTSQTGPTFNKRSIQSTVLADNGEIIVL 603 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GL++D+ Q +PLL IP +G LFR+ R +T + + P ++ Sbjct: 604 GGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRTKTNLMVFLRPVII 652 >gi|127511323|ref|YP_001092520.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4] gi|126636618|gb|ABO22261.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4] Length = 563 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 24/250 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAADFGGKFVSEGGDFSVK 248 QV L+ + EV Q G SG S A D G ++ Sbjct: 288 RQVILEAKVLEVTLSDGYQQGIHWESVLGQSGNNSIEFGTSPAPDGLGDVITSAIGGITS 347 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------- 300 + F T+++ L+ + L+ P +TA + Q A G + T S Sbjct: 348 LQIKGKDFSTMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGRDEYFVTDVSSTTVAGTT 407 Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGDMPSY 351 +T +T G+ L TP + G + L I V + + + ++P Sbjct: 408 PVTTPEVELTPFFSGIALDVTPQIDEEGSVLLHIHPSVIDIKEQNKSIKVSDSTLELPLA 467 Query: 352 R--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + +R++DT ++ +G +V+ GL+K + +L +PLL IP LG F N + +TE Sbjct: 468 QSEIRESDTVIKANTGDVVVIGGLMKSENIELISKVPLLGDIPFLGEAFTNRSNSLRKTE 527 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 528 LVILLKPTVV 537 >gi|167560915|ref|ZP_02353831.1| general secretion pathway protein D [Burkholderia oklahomensis EO147] Length = 743 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 100/289 (34%), Gaps = 30/289 (10%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ + E+ +G Q + Sbjct: 365 IQADAATNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 423 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--------------------LDRFSFETV 259 ++ + G S + + Sbjct: 424 ANNALYAGTNLTTGGVGGGNSITSLTAGATNPLNVVGALTPGLNIGWLRNMFGIQGLGGL 483 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHD 311 L + L+ P L + + A G T +++ + D Sbjct: 484 LQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRD 543 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVL 370 G+ LH P + G + L++ TE S V G + P++ R +TV +G IVL Sbjct: 544 VGLTLHVKPQITDGGILKLQLYTEDSSVVNGTLTSQTGPTFNKRSIQSTVLADNGEIIVL 603 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GL++D+ Q +PLL IP +G LFR+ R +T + + P ++ Sbjct: 604 GGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRTKTNLMVFLRPVII 652 >gi|163781745|ref|ZP_02176745.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1] gi|159882965|gb|EDP76469.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1] Length = 663 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 106/278 (38%), Gaps = 25/278 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ L++ QV + TI E L IG + I G G S + Sbjct: 364 SLISGLDVR-RKQVLIAATIVEASTKSLLDIGVRWQILGKRGGASFRGTSLSNIYSSFAS 422 Query: 243 GDFSVKGVLD-------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G+F + D + LE + ++ P + + Q A Sbjct: 423 GNFLMGVFSDVGRTVTVGDATFFFPDLVLLFSLLETGSGFNIISNPRVLTLDNQPAIIKV 482 Query: 290 GGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGR-----IGLRIQTEVSEPV 340 G Y + + + G+ L+ TP + + L + Sbjct: 483 GQVVPYAEGVKFDINGQPIITYDYKEVGLELNVTPRISGDNLRLTIGLNLEEIIDFVTNE 542 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 IG + +P R+ ++ V + +G T++L GL+ + EG+P L +IPILG LFR Sbjct: 543 IGATSYTVPVTSNREVNSDVVIENGQTVILGGLVSTKTLKTMEGVPGLWRIPILGRLFRR 602 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 +++T +FI TP++V + +L++ + + Sbjct: 603 DVKQKDKTTLFIFITPYVV--SSPEELTKITEEHRKLS 638 >gi|104783254|ref|YP_609752.1| type II secretion system protein D [Pseudomonas entomophila L48] gi|95112241|emb|CAK16968.1| putative type II secretion system protein D [Pseudomonas entomophila L48] Length = 651 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 98/266 (36%), Gaps = 26/266 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L+I QV ++ IAEV +++G Q G G Sbjct: 339 AAYRSIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 397 Query: 239 VSEGGDFSVKGVLDRFSF--------------------ETVLHALERATAIRTLAEPTLT 278 S G S +++AL+ + L+ PTL Sbjct: 398 ASIAGAASSGDNAKLGKLLSATTGATAGFGHFGGGFNFAMLVNALKGNSGFNLLSTPTLL 457 Query: 279 AISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + AS G + + T S + ++ + GV L P V + L I Sbjct: 458 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQVNVDNSVRLDIVQ 517 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS A D+ R+ T V + G ++L GL+ D+ + +PLL IP L Sbjct: 518 EVSSIAESRAASDV-ITNKREIKTKVMVEDNGLVILGGLISDERSTSNQRVPLLGDIPGL 576 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G LFR+ + + + P +++ Sbjct: 577 GRLFRSDASKGTKQNLMVFIRPRILR 602 >gi|302383551|ref|YP_003819374.1| general secretion pathway protein D [Brevundimonas subvibrioides ATCC 15264] gi|302194179|gb|ADL01751.1| general secretion pathway protein D [Brevundimonas subvibrioides ATCC 15264] Length = 688 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 64/291 (21%), Positives = 104/291 (35%), Gaps = 31/291 (10%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-- 249 QV ++V I E+ ++ +QIG Q + G+ F G S G Sbjct: 393 RRAQVKIEVAIVEITGELGEQIGVQLGLGGAVPDDGVIGGTSFSNGGSDLGTVLSALGYP 452 Query: 250 ------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 F +L AL +A L+ P++T + Q A G + Sbjct: 453 AGRLLGQGLSLAAGSEGEFGLLLQALGTNSAANLLSSPSVTVLDNQPAEIVVGQNVPFRT 512 Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPS 350 +S+ T+++ D G+ L P V + L + EVS V + Sbjct: 513 GSFATDGNSTNPFTTISREDVGLTLRVIPRVHEGDVVKLDVSQEVSSLVTTNITGAADLI 572 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R T+V G TIVL GL+ DD +P LS +P++G FR+ R ++ + Sbjct: 573 TNRRSIQTSVLANDGETIVLGGLVTDDRMSNNSRVPGLSSLPVVGNAFRSRRDSQTRRTL 632 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 FI P +++ D ++F R N+ Sbjct: 633 FIFLKPTILR----------TDDDVAASARESFDRLRANEPVRIDPTRPPP 673 >gi|226226499|ref|YP_002760605.1| putative general secretion pathway protein D precursor [Gemmatimonas aurantiaca T-27] gi|226089690|dbj|BAH38135.1| putative general secretion pathway protein D precursor [Gemmatimonas aurantiaca T-27] Length = 621 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 67/299 (22%), Positives = 113/299 (37%), Gaps = 22/299 (7%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL--------------LNIAGE 193 G + + A + + L ++ V+ L+I Sbjct: 295 SGAATPVTGATVARDSAAGLLVGRTTVVANTPTNSLVIRTAPPNFPMLRETIEALDIR-P 353 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV +VTIAE+ + G + G ++ + LD Sbjct: 354 AQVLFEVTIAEIALGRGFEFGIDWAAVNRG-GDVQAQFGNPEIPDTGSTSALLRVVRLDG 412 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATSVTT 309 +L + + ++ LA P + A + + AS G + + + + + +V Sbjct: 413 TGVRALLRTIASKSEVQVLATPEIMAANNREASILVGSKVPFISSTRLGNDISIDRAVQY 472 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGT 367 D G L PT+ G I +++ EVS A P R+A T L G T Sbjct: 473 QDVGTKLAIIPTINDEGYISVQLLQEVSSLTPQTVAAALSAPVISTREASTRAVLRDGQT 532 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 V+AGL+ + +G+P+L IP LGALF+ R+ TE+ I TP++V+ A D Sbjct: 533 AVIAGLIGETRTTQDQGLPILKDIPWLGALFKRQSSTRQRTELAIFVTPYVVRSDADAD 591 >gi|85711535|ref|ZP_01042593.1| Type II secretory pathway, component PulJ [Idiomarina baltica OS145] gi|85694687|gb|EAQ32627.1| Type II secretory pathway, component PulJ [Idiomarina baltica OS145] Length = 404 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 117/285 (41%), Gaps = 11/285 (3%) Query: 144 TVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 +L + + Q AV + + T + S K+++ L+I + QV ++ + Sbjct: 118 AALLSQSEQRLLSDQGAVSIDARTNTLILKETPHNVSGIKQLITQLDIPVK-QVMIEARM 176 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSK------SFAADFGGKFVSEGGDFSVKGVLDRFSF 256 ++ + ++Q G + + + + +V + + Sbjct: 177 VTMKSNAIEQFGVRWGDLTPRNDDQVIADVIDGMRVELPAVPAAGRLKANVGKLSEGLLL 236 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 + L A+E+ +A P + + Q A G + Y ++S GAT+V + L Sbjct: 237 DLELSAMEQDNEAEIIARPKIFTSNQQPAYIEQGTEFPYVESAAS-GATAVKFKKAVMGL 295 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLL 374 TP + S + L + + V+ P+ ++ T V + SG TIVL G+ Sbjct: 296 RVTPQITSNDYVMLDLTITQNTRGDTVSTPTGPAVAIDTQEMATRVLVKSGETIVLGGIF 355 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + G+P+LS +P +G LF+N R E+ E+ I TP L+ Sbjct: 356 QQYELKDDTGVPILSSLPFVGNLFKNQREQSEKRELVIFVTPTLL 400 >gi|289667997|ref|ZP_06489072.1| fimbrial assembly protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 631 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 97/267 (36%), Gaps = 33/267 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------------SS 224 DQV ++ I + +G + I G + Sbjct: 363 RPVDQVLIESRIVIATDTFARDLGARFGIAGRQQYGGNTGVISGSTTNNVSILNSGIHNV 422 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 +F G + G + + F+ + L A++ ++ P + + + Sbjct: 423 PGGLNFNLPAGTFTTNTAGAIAYTLLGRNFALDMELSAMQEEGRGEVVSNPRIVTSNQRE 482 Query: 285 ASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 G + + + +V + + L TPT+ + R+ L + + E Sbjct: 483 GVIKQGREIGYVTISGGGAGGQSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 542 Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 ++ G +P R+ +T V + G T+V+ G+ + ++ +P L IP LG L Sbjct: 543 RFIDLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESIAKVPFLGDIPFLGNL 602 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAM 424 F+ ++E+ E+ + TP +++ + Sbjct: 603 FKKRGRSKEKAELLVFVTPKVLRVASA 629 >gi|3978519|gb|AAD04923.1| PilQ [Myxococcus xanthus DK 1622] Length = 901 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 97/287 (33%), Gaps = 35/287 (12%) Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 T + + ++ ++ L+ QV ++ I E + +G Q + Sbjct: 609 RTNVLIVKDVRSNTERARSLVRSLDTQTP-QVLIESRIVEANTSFSRSLGVQWGGQARAG 667 Query: 225 GPSKSFAA-------------------------------DFGGKFVSEGGDFSVKGVLDR 253 + + G+ V F+ Sbjct: 668 QATGNSTGLIFPNNLAVTGGVTGTGAGLPDNPNFAVNLPTGTGQGVGGAMGFTFGSAGGA 727 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 L A E +++T++ P +T + +A +S + T + Sbjct: 728 LQLNLRLSAAENEGSVKTISAPKVTTLDNNTARI--NQGVSIPFSQTSAQGVNTTFVEAR 785 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAG 372 + L TP + G + + I ++P PS + ++A+T V + G T V+ G Sbjct: 786 LSLEVTPHITQDGSVLMSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGG 845 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P LS+IP+LG LF+N+ E+ I TP ++ Sbjct: 846 IYVRRGATQVNSVPFLSRIPVLGLLFKNNSETDTRQELLIFITPRIL 892 >gi|291286428|ref|YP_003503244.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM 12809] gi|290883588|gb|ADD67288.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM 12809] Length = 616 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 100/258 (38%), Gaps = 28/258 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------A 232 +QV ++ I E + G + + + + + Sbjct: 327 RPREQVYVEALIIETSIENGSDFGVEWQVGAGNDSQAGTIGYLGSDGALTSFQSSVLDGD 386 Query: 233 DFGGKFVSEGGDFSVKG------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 +S G + + G + + + + ++ A+ I L+ P + + + A Sbjct: 387 SPNFGALSSGFNLGILGDIVTYEGVSFPTLGILANFVKTASGINILSNPQILTLDNEEAE 446 Query: 287 FTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G + K S++ S D GV L+ P + S I L+I+ EV + Sbjct: 447 IFVGENRPFLTSTKYDSNNNPVQSYDYRDVGVKLNIVPQISSNDTITLKIEQEVKKVSGA 506 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 P R T V+L G +V++GLLKDD + +P LS IP++G LF+N Sbjct: 507 TADVVAPVTLTRSTKTKVKLKDGAIMVISGLLKDDSETYNSSVPWLSSIPVIGWLFKNKN 566 Query: 403 FNREETEIFIAATPFLVK 420 + E+T + + + +++ Sbjct: 567 SSSEKTNMMVFISTSIIR 584 >gi|254251012|ref|ZP_04944330.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] gi|124893621|gb|EAY67501.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] Length = 780 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 97/274 (35%), Gaps = 39/274 (14%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK-----F 238 V++ L+ QV ++ I E+ +G Q + + G Sbjct: 399 VIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPTSGLGNSIINL 457 Query: 239 VSEGGDFSVKGVLDRF------------------------SFETVLHALERATAIRTLAE 274 + G S GV +L + L+ Sbjct: 458 TAGGTTTSAGGVTGGGLAANLGTLTQGLNVGWLHNMFGVQGLGALLQYFSGVSDANVLST 517 Query: 275 PTLTAISGQSASFTSGGQ--------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 P L + + A G + ++S + D G+ LH P + G Sbjct: 518 PNLITLDNEEAKIVVGQNVLIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGG 577 Query: 327 RIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L++ TE S V ++ P++ R +T+ +G IVL GL++D+ Q + Sbjct: 578 ILKLQLYTEDSAVVPSTTSSQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKV 637 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 PLL IP +G LFR+ R++T + + P ++ Sbjct: 638 PLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 671 >gi|319791917|ref|YP_004153557.1| type IV pilus secretin pilq [Variovorax paradoxus EPS] gi|315594380|gb|ADU35446.1| type IV pilus secretin PilQ [Variovorax paradoxus EPS] Length = 713 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 104/280 (37%), Gaps = 41/280 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------------- 219 +++ L+I QV ++ I E K +G + Sbjct: 437 ELIQKLDIPVR-QVLIEARIVEASDTFGKSLGVRLGGGISRERVASANGNPAYGTLGVMP 495 Query: 220 ------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALER 265 ++ + A G + G F++ S + ALE Sbjct: 496 ATTNGGGVGGAAATWTNSNFINLPAGDAGGTGNTPGAFAISLFNSSLSRMLNLEISALEA 555 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + ++ P + A G + Y+ +SS GATS++ + L TP + Sbjct: 556 DGKGKLVSSPRVITADQTKALIEQGEEIPYQQATSS-GATSISFRKAVLKLEVTPQITPE 614 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G I L +VS+ GVN P+ + T V + +GGT+V+ G+ + + + Sbjct: 615 GNIIL--TLDVSKDARGVNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRV 672 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 P+L +IP +GALFR +TE+ + TP ++ Sbjct: 673 PVLGEIPYMGALFRKRERVANKTEMLVFITPKMITDRNAA 712 >gi|295678175|ref|YP_003606699.1| general secretion pathway protein D [Burkholderia sp. CCGE1002] gi|295438018|gb|ADG17188.1| general secretion pathway protein D [Burkholderia sp. CCGE1002] Length = 811 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 59/288 (20%), Positives = 102/288 (35%), Gaps = 41/288 (14%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + + + V++ L+ QV ++ I E+ + +G Q + +S + Sbjct: 389 TAPEATYRNLRAVIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQVANNSLFAGTNLQ 447 Query: 232 ADFGGKFVS----------------------------EGGDFSVKGVLDRFSFETVLHAL 263 ++ + + +L AL Sbjct: 448 TGSSNSIINLTAAAAAAGATGATGGAALVSGLSGLQQGLNVGWIHNIFGVQGLGALLQAL 507 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVV 315 + L+ P L + + A G +T S S + T D G+ Sbjct: 508 SQTADANVLSTPNLITLDNEEAKIIVGTNVPIQTGSYSNLTSGTTSAAFNTFDRVDVGLT 567 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLA 371 LH P + G + L + TE S V G N P + R +TV +G IVL Sbjct: 568 LHVKPQITDGGILKLLLYTEDSAIVNGTNNAATNPAGPEFTKRSIQSTVLCDNGEIIVLG 627 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GL++D+ Q +PLL IP LG LFR+ + R +T + + P ++ Sbjct: 628 GLMQDNYQVSNSKVPLLGDIPWLGQLFRSEQKTRNKTNLMVFLRPVIL 675 >gi|254498863|ref|ZP_05111570.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella drancourtii LLAP12] gi|254351917|gb|EET10745.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella drancourtii LLAP12] Length = 578 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 58/262 (22%), Positives = 112/262 (42%), Gaps = 25/262 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ ++++ + + QV L+ I EV + Q+G + G+S +F + Sbjct: 265 ERYLDMVQNSMDRQVILEAKILEVNLNNQFQMGINWKLFGASLNALSNFPEVDIAQADFP 324 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 F V + F +V+ ALE ++ L+ P ++A++ QSA+ G + T S Sbjct: 325 -SAFDVDVHWNPKDFTSVIQALETQGNVQVLSSPRVSAMNNQSAAIKVGFDEFFVTNVSQ 383 Query: 302 TGA-------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EP 339 ++T G+ L TP + + G++ L + VS + Sbjct: 384 NQNIVTSSLVTQPILNVNLTPFFSGITLDVTPQIDANGQVTLHVHPTVSLVKDQRKVIDL 443 Query: 340 VIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 ++P +R++DT V +G +V+ GL++D + +P IP LG L Sbjct: 444 GTQGGILNLPLANSTIRESDTIVHAKTGQVVVIGGLMQDTTSEGIGQVPWFGNIPFLGTL 503 Query: 398 FRNSRFNREETEIFIAATPFLV 419 R ++ +++E+ I P LV Sbjct: 504 VRATKQTSQKSELVILLRPTLV 525 >gi|121603587|ref|YP_980916.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2] gi|120592556|gb|ABM35995.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2] Length = 712 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 60/344 (17%), Positives = 121/344 (35%), Gaps = 35/344 (10%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 D +++ + + + + S I V++ + G S R + Sbjct: 369 KDKQELEARVAIQNLEAVRTQSFQINYAKASEIAVQISAGG---TGATTARILSNRGSVI 425 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +E + S ++V N + QV ++ I E + +G + Sbjct: 426 AEP-RTNQLFVTDIPSRLEQVQNFIAKLDIAVRQVLIEARIVEASDTFGRSLGVRLGGGT 484 Query: 222 SSS-------GPSKSFAADFGGKFVSEGGDF-------------------SVKGVLDRFS 255 + + S ++G G+F S+ Sbjct: 485 IGAAGALTRGNTNVSLGTNYGATVADTSGNFVSFPASTLGVANAASSFAVSIFNASANRF 544 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 L ALE + ++ P + A G + Y+ ++S+GATS+ + Sbjct: 545 LNLELSALEADGKGKIVSSPRVVTADQTKALIEQGTEFPYQ-TATSSGATSLAFRKANLK 603 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + G I L + +V++ G + + T V + +GGT+V+ G+ Sbjct: 604 LEVTPQITPEGNIILDL--DVNKDSRGETTAAGIAIDTKHIQTQVLVENGGTVVIGGIFT 661 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +PLL +P LG LF++ + E+ + TP ++ Sbjct: 662 LEETNNEVKVPLLGDVPYLGNLFKSRERTSRKQEMLVFITPKMI 705 >gi|116751076|ref|YP_847763.1| general secretion pathway protein D [Syntrophobacter fumaroxidans MPOB] gi|116700140|gb|ABK19328.1| general secretion pathway protein D [Syntrophobacter fumaroxidans MPOB] Length = 793 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 21/248 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------EG 242 V ++V IAEV + G + + + G + G VS Sbjct: 520 PRAVLIEVIIAEVALTKDFEYGLKWYFSHAEVGAGVGQGSLNGLGGVSDIALNLAGISSA 579 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G ++ V + VL L T ++ L+ PTL A + A+ GG+ + S + Sbjct: 580 GGMALAWVSNAKDMAGVLSWLSSKTKVKILSTPTLLATDNKEAAIQVGGRTPVPSGSYTG 639 Query: 303 G--------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSY 351 G +++ + G +L TP + + G + L ++ + G P++ Sbjct: 640 GTSTTLDTVFSTIEYEETGTILTVTPHINAGGLVRLEVEQTIRRVGANATVGVNNTAPTF 699 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R TT+ G T+V+ G++ + + G P+L +PI+G LF +RE TE+ Sbjct: 700 TERNLKTTLLAQDGSTVVIGGIIDEIDRDTTTGAPMLVDVPIIGPLFGQKGKSRERTELL 759 Query: 412 IAATPFLV 419 IA TP +V Sbjct: 760 IAITPRVV 767 >gi|261414659|ref|YP_003248342.1| type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371115|gb|ACX73860.1| type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326330|gb|ADL25531.1| bacterial type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 487 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 22/245 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------------KSFAADFGGK 237 Q+ + + V ++ +++G + SS + F Sbjct: 192 QIMITAKLVVVNSELARELGVDWTAALGSSTLTPGTAAAATGATAGSSRISGVIQSFPNG 251 Query: 238 FVSEGG--DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G + ++ L + + + L + LA P ++ + A G + Sbjct: 252 TSPAVGKANTAITASLLDNNLQIAISNLMGDASTEVLASPQVSTLDNTEAQVFM-GDKVS 310 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 V +G +S + G+ L TP V RI L + E G + ++ Sbjct: 311 IRVIDDSGESSTKMVETGIKLTVTPHVSGDNRILLDLHPE--NNSYGYDEKGEVVISTQE 368 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A T V + G T+V+ GL +++ + + GIP L IP+LG LF+ SR + + ++ I T Sbjct: 369 AKTKVVVADGETVVIGGLTRNENTESESGIPFLKDIPLLGNLFKYSRKSITKKDLVIFVT 428 Query: 416 PFLVK 420 P +++ Sbjct: 429 PRIIR 433 >gi|302036706|ref|YP_003797028.1| putative type IV pili biogenesis protein PilQ [Candidatus Nitrospira defluvii] gi|300604770|emb|CBK41102.1| putative Type IV pili biogenesis protein PilQ [Candidatus Nitrospira defluvii] Length = 664 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 65/342 (19%), Positives = 123/342 (35%), Gaps = 56/342 (16%) Query: 109 MLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + + + + ++ +LR+ + + V S+ +++ ++ ++ ++ + Sbjct: 350 VTRVFYIRNLNATEVQTSLRQNLSPRGTMTVSAASNALIISDTESKLEVLRQLLDGVDLE 409 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + QV ++ I + + +G Q I + S Sbjct: 410 VP-------------------------QVQIEARIVQADTTYTRSLGVQWGIQNVNQLGS 444 Query: 228 KSFAADF---------------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 S + F S G G D + L A E Sbjct: 445 SSGTSAFKTGTTGAFGAQVSDFLINLPANPGLPSVPGAGFSIGKTDGAMLDVRLSAGELL 504 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + +A P +T + + A G ++T S T T D + L+ TP + S Sbjct: 505 GLTKVIAAPKITTLDKRDAKIAQGESIPFQTTSLQG--TQTTFVDANLELNVTPQITSRD 562 Query: 327 ------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 +I ++++ + N PS R+A T V + G T+V+ G+ D Sbjct: 563 PKEIGKQILMKVRATRNAVGARSNPAG-PSIDRREATTQVLVRDGETMVIGGVFVDTQSN 621 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 GIP LS+IP+LG LF+N N + E+ I TP +V+ Sbjct: 622 NVAGIPYLSRIPVLGWLFKNKTENVSKQELLIFLTPTIVRST 663 >gi|167582884|ref|ZP_02375758.1| general secretion pathway protein D [Burkholderia thailandensis TXDOH] Length = 744 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 102/297 (34%), Gaps = 31/297 (10%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ + E+ +G Q + Sbjct: 365 IQADAATNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 423 Query: 220 TGSSSGPSKSFAADFGGKFVS------------------EGGDFSVK---GVLDRFSFET 258 ++ + G S ++ + Sbjct: 424 ANNALYAGTNLPTGGVGGGNSIVDLTTRAATSAVGAISTLTPGLNIGWLHNMFGIQGLGG 483 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTH 310 +L + L+ P L + + A G T +++ + Sbjct: 484 LLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRR 543 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIV 369 D G+ LH P + G + L++ TE S V N P++ R +TV +G IV Sbjct: 544 DVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGEIIV 603 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 604 LGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIITDRETAQ 660 >gi|56476683|ref|YP_158272.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum EbN1] gi|56312726|emb|CAI07371.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum EbN1] Length = 721 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 96/267 (35%), Gaps = 41/267 (15%) Query: 193 EDQVTLKVTIAEVRRDILKQ----------------------------IGFQHSITGSSS 224 QV ++ I E +D + +G TG ++ Sbjct: 449 PRQVMIEARIVEANKDFARDLGVRLGVGGVGGRTVGFDANGRPIRRATVGGGLENTGFNA 508 Query: 225 GPS------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G + + S + L ALE R + Sbjct: 509 GQTVAATDAQVATVPGGLNVNLPAPGGSGVLSAVLWNNTATRFLNLELSALESDGRGRIV 568 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + P + + A G + Y +S+GA S+ + L P + GR+ L + Sbjct: 569 SSPRVLTANQVEAVIEQGTKIPYP-EKTSSGAASIKFEKAVLSLKVKPQITPEGRVQLFV 627 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 P + P+ + T V + +GGT+V+ G+ +++ IPLL ++P Sbjct: 628 LVNKDRPDFARSVEGTPTVVTKNIQTEVLVENGGTVVIGGIYEEEETDSVTRIPLLGEVP 687 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 ++GALFRN+ N + +E+ I TP +V Sbjct: 688 LVGALFRNTIKNSKRSELLIFITPRIV 714 >gi|226943724|ref|YP_002798797.1| general secretion pathway protein D [Azotobacter vinelandii DJ] gi|226718651|gb|ACO77822.1| general secretion pathway protein D [Azotobacter vinelandii DJ] Length = 752 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 11/239 (4%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + V +AEV + + +G S G + G ++ + Sbjct: 472 VIIDVLLAEVNLNDREGLGVDWQNITGSLGSKQLIFGTANGI---GSSGLNISALNSAGQ 528 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------VT 308 + L+A + P L SG+ A+ G + T ++ + T V Sbjct: 529 TKATLNAFYDNNQAVIRSSPKLMVRSGEEATIEVGNEIPVVTGTTQSTDTDNAPITQTVQ 588 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGT 367 GV+L+ PTV + G + L+I E+SE G P R+ +T + L GG+ Sbjct: 589 YRKTGVLLNIKPTVQASGVVDLKISQELSESTDTGTGDTLTPIINNRRVETALTLRDGGS 648 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++LAGL+ + G+PLL +P +G LF++ + TE+ + P++V+ Sbjct: 649 VMLAGLISSSKGKGDNGVPLLGDLPWIGNLFKSQSNSETRTELIVMIIPYVVRDFDEAQ 707 >gi|283781400|ref|YP_003372155.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283439853|gb|ADB18295.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 854 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 4/248 (1%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I VR +G + + + + +K Sbjct: 339 PRQVLIEAMILSVRLSDNMTMGVNFEALRDKNNVRLVSGSPLTDLANIDLSEGGLKLGFL 398 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVTTH 310 S + ALE +A P L ++ Q A G Q ++ TV+ ++ SV Sbjct: 399 DASLAVFIDALETVGDTNVIASPRLMCLNKQRAEIQIGEQLGYVSTTVTENSATQSVNFL 458 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIV 369 D G +L P + + G I L + E+S + + +P+ V + T V G T++ Sbjct: 459 DVGTLLRLRPNIANDGLIRLEVHPELSTGTVSIEQGLTIPNKTVTQVTTNVMCADGCTVI 518 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLS 428 L GL++ D+ IP L +P++G FR +E TEI + TP +V +P+ + Sbjct: 519 LGGLIRQDLTNNTSQIPFLGSLPLVGPAFRQKTETQERTEIIVLLTPRIVSEPMLGEEGR 578 Query: 429 RPDDHYSV 436 + + ++ Sbjct: 579 KYGNSFTE 586 >gi|160901009|ref|YP_001566591.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1] gi|160366593|gb|ABX38206.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1] Length = 716 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 58/324 (17%), Positives = 116/324 (35%), Gaps = 43/324 (13%) Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS-GRNQYANSSSKKVMNLLNIAGED 194 +++ + + V + S+R +SE +Q + A + K + L Sbjct: 390 LQITANNSGGGVGNSVSSRFLSERGSAISEPRTNQLFVTDTPAKLEAVKALLLTLDVPVR 449 Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-------------------------------ITGSS 223 QV ++ I E R + +G + + S Sbjct: 450 QVLIEARIVEARDTFGRALGVRLGGGDLRAQRGGDGGYGIGGDNRLVFGTGYENAVASSG 509 Query: 224 SGPSKSFAADF--------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 SG + + + +F G + S+ L A+E + ++ P Sbjct: 510 SGGTVNTSGNFVNLPAAKLTGVSGTGSFALSIFNSAANRFLALELSAMEADGQGKIISSP 569 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L A G ++ Y + GAT++ + L TP + G I L + Sbjct: 570 RLVTADQTKALIEQGTEYPYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGDIILD--LD 626 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V++ G + + T V + +GGT+V+ G+ + + + IP L +P+LG Sbjct: 627 VNKDSRGETTTQGVAIDTKHIKTQVLVQNGGTVVIGGIFEMEETNQESKIPFLGDVPVLG 686 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF++ ++ E+ + TP ++ Sbjct: 687 HLFKSRVRESQKREMLVFITPKMI 710 >gi|312143767|ref|YP_003995213.1| type II and III secretion system protein [Halanaerobium sp. 'sapolanicus'] gi|311904418|gb|ADQ14859.1| type II and III secretion system protein [Halanaerobium sp. 'sapolanicus'] Length = 629 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 64/320 (20%), Positives = 122/320 (38%), Gaps = 36/320 (11%) Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + + D ++ + F D + V + +V++G Sbjct: 244 YDKSLEPGTRHVRVDYVDTEQIKEVIENFYPDIRLHVNNKTKRIVING------------ 291 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + S ++++ LN+ QV ++ + EV L+++G + ++ Sbjct: 292 ------------PENRLDSVEQLVKQLNVP-RQQVVIETRVEEVSEGRLRELGIEGDLSQ 338 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + S+ + AL+ + +TLA P L ++ Sbjct: 339 LRIIKDDHITDRRADSREPQPDKLSLT-------WPEFFRALDETSDSKTLANPRLMTLN 391 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 G++A+ + Y+ V + + + GV + FTP + I L I+ VS Sbjct: 392 GETANMAILDEVPYRVVEINDDGSRTETFEYAEAGVDIEFTPWITENKEIELSIKPRVSS 451 Query: 339 PV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + AG P+ R R+ +T + L G T+ + GL++ D + IPLL IPI+G L Sbjct: 452 FTQVTTAAGAPPALRSREVETMLRLNDGETLAIGGLIQTDQDGVITKIPLLGDIPIIGEL 511 Query: 398 FRNSRFNREETEIFIAATPF 417 F++ R E+ I TP Sbjct: 512 FKSRRNEGSHNELIIFVTPR 531 >gi|149189158|ref|ZP_01867445.1| fimbrial assembly protein [Vibrio shilonii AK1] gi|148836912|gb|EDL53862.1| fimbrial assembly protein [Vibrio shilonii AK1] Length = 550 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 116/313 (37%), Gaps = 30/313 (9%) Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKVMNLLNIA 191 NI +D + G + ++ T K+++ L+I Sbjct: 238 NINYAKAADVAAMIGGDSDVSMLSERGSVAIDERTNALLVRELPENLRVIKEIIASLDIP 297 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------- 244 + QV ++ + ++ ++++G + T + + + GG Sbjct: 298 VK-QVQIEARVVTIKEGNIEELGIRWGYTSINGDTTIGSTIEGNLASSGIGGGEVDIDDF 356 Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 F V + + L AL+ + ++ P L + +SA Sbjct: 357 LNVNLGALSDNAASIAFQVASLGSNTLLDLELSALQSESKAEIISSPRLITTNKKSAYIE 416 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAG 346 G + Y +SS GAT+V + L TP + R+ L + V+ G Sbjct: 417 QGTEIPYLKSTSS-GATAVEFKKAVLSLTVTPQITPDNRLILDLDVTQDRVGEVLKTLEG 475 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + ++ T V + G T+VL G+ + + + +P+L IP LGALFR + N Sbjct: 476 ETVAIDTQRIGTQVLVNDGETVVLGGIFQHAMTSKVDKVPVLGDIPGLGALFRRTYENIG 535 Query: 407 ETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 536 KNELLIFVTPKII 548 >gi|242277876|ref|YP_002990005.1| type II and III secretion system protein [Desulfovibrio salexigens DSM 2638] gi|242120770|gb|ACS78466.1| type II and III secretion system protein [Desulfovibrio salexigens DSM 2638] Length = 534 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 72/430 (16%), Positives = 157/430 (36%), Gaps = 18/430 (4%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISI---GLNKVIILQVPVDVQDVLV 71 L + + I + + +++ + ++ V + L Sbjct: 87 ALRLLYSVLDMKGYTLVQQSGYYKIVSKSMAVHEGLNVDSITVGGDQMV-TEVIMLKYLK 145 Query: 72 SDPTKADV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 + AD + SP GK+ + ++ L I+ + Sbjct: 146 AADVIADFRQILSPEGSIFSGKSNNYIVFTDTAANVNKIKELISHIDMPGSLPVSKTYSL 205 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 V + + + + Q + + + + ET + + +++ L++ Sbjct: 206 QYIEAKTVAPMLTKLYTEKVGKVTQSTVQILSMDETNSLIVLAPESVHDDITSIISKLDV 265 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247 QV++K + EV ++GF+ + ++ G A DFG F G + Sbjct: 266 RT-MQVSIKAYLVEVTLTDETKLGFEWMFSTNADGTDLKGALDFGHIFDPTGIANTAQEA 324 Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVS 299 +++ +F+ +++ + R ++ P + A+ Q AS G + S Sbjct: 325 LKFSIINSDNFKMMMNFFASDDSSRVVSAPHIVALDNQKASIAVGTEIPILKLTQTSVTS 384 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + +G+ L+ TPT+ + L+I +S + D R A TT Sbjct: 385 QQNVIKTYDHRKFGMQLNITPTIAENRDVTLKIDQTLSSLLADDTDPDKWQSTDRAASTT 444 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + T+V+ GL+ + K+G P L +P+LG LF + + ++E+ + TP+++ Sbjct: 445 VLVKDAQTLVIGGLMTVNSALDKKGAPYLRNMPVLGPLFGSQDDSMTKSELLLFLTPYVI 504 Query: 420 -KPVAMRDLS 428 P +S Sbjct: 505 ATPDEADAMS 514 >gi|88704159|ref|ZP_01101873.1| General secretion (type II) pathway protein D precursor [Congregibacter litoralis KT71] gi|88701210|gb|EAQ98315.1| General secretion (type II) pathway protein D precursor [Congregibacter litoralis KT71] Length = 745 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 110/284 (38%), Gaps = 7/284 (2%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 V+ G + + D + + L + + L +A QV + Sbjct: 426 TSVNMGTTGAGQISPLADVRVVADEENNALMIYADGKQYGIVKDALKQLDVVAT--QVII 483 Query: 199 KVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 + +I EV+ + G + + + G + FS Sbjct: 484 EASIMEVQLIDELRYGLEWTFKNGLGNNYDGLGTLAAGAAGPAAAAGFSYTVTNSLGDIS 543 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYG 313 VL+AL + I ++ P++ + +A + G Q + ++T D G Sbjct: 544 AVLNALSEESLINVISSPSVMVLDNHTAFISVGDQVPVLQGQTITNGGNSVQNITYRDTG 603 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L P+V + G + + I+ V + +A ++ R ++ V + S ++VL GL Sbjct: 604 VQLSVRPSVNAGGLVTMDIEQSVIDVGSIDSATGQRAFLDRTINSRVAVRSSESVVLGGL 663 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 ++++ G+P+L +IP+ G+LF + + TE+ + TP Sbjct: 664 IRENSSLGDSGVPILREIPLFGSLFGTTTTDSRRTELLVIITPR 707 >gi|188993080|ref|YP_001905090.1| Type II secretory pathway component [Xanthomonas campestris pv. campestris str. B100] gi|167734840|emb|CAP53051.1| Type II secretory pathway component [Xanthomonas campestris pv. campestris] Length = 759 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 31/299 (10%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ET + A S + V+ L++ QV ++ IAEV Q G Sbjct: 445 VSAVAETNTLLVRTSAQAWKSIRDVIEKLDV-MPMQVHIEAQIAEVTLTGRLQYGVNWYF 503 Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268 + + PS + + + G V + ++ AL++ T Sbjct: 504 ENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGSVTSNGVAWTFLGKNAAAIISALDQVTN 563 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322 +R L P++ + A+ G + + S +TG +SV D GV+L P V Sbjct: 564 LRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRV 623 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370 G + L I EVS P A + R+ T + +G TI+L Sbjct: 624 TKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAACNVDINTRRVKTEAAVQNGDTIML 683 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 AGL+ D GIP LSK+P++GALF N + E+ + TP +V+ P RDL+ Sbjct: 684 AGLIDDSTTDGSNGIPFLSKLPVVGALFGRKTQNSDRREVIVLITPSIVRNPQDARDLT 742 >gi|319944755|ref|ZP_08019019.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599] gi|319742004|gb|EFV94427.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599] Length = 747 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 3/202 (1%) Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + SF A S+ G L ALE + ++ P + S + Sbjct: 548 NTNFFSFPAGGINGTNPASLAISLFGSSLSRFINLELSALEADQRGKVVSSPRVLTSSQR 607 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 A G + Y++ +SS GATSV+ + L TP + G + L +VS +G Sbjct: 608 PAVIEQGTELPYQSATSS-GATSVSFRKANLRLEVTPQITPEGNVILD--VDVSRDAVGQ 664 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + R T V + GGT+V+ G+ + + + +PLL IP+LG LFR++ Sbjct: 665 LTNAGYAIDTRHVKTQVLVEDGGTVVIGGIYEQFERNRTDKVPLLGDIPVLGYLFRSTTR 724 Query: 404 NREETEIFIAATPFLVKPVAMR 425 + TE+ + TP +V + Sbjct: 725 TNDRTELLVFLTPRIVTDTLAQ 746 >gi|238019550|ref|ZP_04599976.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748] gi|237864249|gb|EEP65539.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748] Length = 421 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 118/275 (42%), Gaps = 9/275 (3%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L ++ T+ + + LSE + ++N ++ QV L+ TI + Sbjct: 154 LSNIMGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLINAVD-KEPKQVQLEATIIAME 212 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + K+ GF+ S D + + + G +F + L +E + Sbjct: 213 QSYAKEQGFRWS-----WLSLTGHGEDKTNSYGAVTFGKTPGGEAYKFFVKPELSLMESS 267 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324 +A+P++ A++G++A G + S G + G+ L++TP + + Sbjct: 268 GKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 327 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + +I EVS P I V+ R+A T V L G +V+ GL+ + Q + Sbjct: 328 DGGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 386 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+L IP+LG LFR+SR ++ E+ I +V Sbjct: 387 IPILGDIPLLGKLFRHSRKTKDSIEMLILVRANVV 421 >gi|153802182|ref|ZP_01956768.1| general secretion pathway protein D [Vibrio cholerae MZO-3] gi|124122256|gb|EAY40999.1| general secretion pathway protein D [Vibrio cholerae MZO-3] Length = 404 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 111/320 (34%), Gaps = 49/320 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204 G + + V ++ + S +V+ L+I QV ++ I E Sbjct: 24 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 82 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237 + +G Q S S G Sbjct: 83 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRN 142 Query: 238 ------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + + + +++A+ ++ L+ P++T + A Sbjct: 143 ETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEA 202 Query: 286 SFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 SF G + T ++ +V + G+ L P + + L I+ EVS + Sbjct: 203 SFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVL 262 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR+ Sbjct: 263 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRS 321 Query: 401 SRFNREETEIFIAATPFLVK 420 + E+ + + P +++ Sbjct: 322 TSSQVEKKNLMVFIKPTIIR 341 >gi|119476023|ref|ZP_01616375.1| type II and III secretion system protein [marine gamma proteobacterium HTCC2143] gi|119450650|gb|EAW31884.1| type II and III secretion system protein [marine gamma proteobacterium HTCC2143] Length = 617 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 79/435 (18%), Positives = 149/435 (34%), Gaps = 37/435 (8%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L PS + ++N+ +I + + + ++ + D+ V + Sbjct: 144 VLKPLLPSSGYIAAYPQSNSLIIADEAENVKRLVALVRKIDASGSI-------DIEVINL 196 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIG-HDGKQMLNLDILIERDIAHLEMTLRRFI-A 132 AD S + L G+ I +++ D R + L L + I Sbjct: 197 LHADAENVSGLVLSLLSDTTGETFSIAPDIRSNSLLMSGDAATTRRVRQLVKQLDQPISD 256 Query: 133 DSNIRV------EMVSDTVVLHGM-------VRTIQDSQRAVELSETFLSQSGRNQYAN- 178 + N RV E +L GM R DS + + + Sbjct: 257 NGNTRVVYLHYLEAKEVLPILKGMGAAMQENNRNAGDSSDISIEASESSNALVMTAPPSM 316 Query: 179 -SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 +V+ ++I + ++ I EV +D + IG + + + S++ +++ Sbjct: 317 LDVMSRVIEQIDIRRAS-ILVEAIIVEVSKDFSQTIGVEWNTSLSANDGAEALTNFGLRN 375 Query: 238 FVSEGGDFSVKGVLD-----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G + L+ S + A+ L+ P + + + A G Sbjct: 376 IDESGAVSLLGAGLNLGFYRNGSLRVLAQAIANENDANILSSPRIMTMDNEEAEILVGSN 435 Query: 293 HLYK-------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 + + S+ T++ HD G+ L TP + I L I EV Sbjct: 436 VPFITGQSTGSSSSTGDPFTTIERHDIGLTLKITPQINEGDSITLDILQEVETISEATTV 495 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + R T V + +VL GL+ DD Q+L +P L +P+LG LFR + Sbjct: 496 ANDIVTNKRSIKTKVIVEDDAILVLGGLVSDDTQELVSKVPFLGDLPLLGGLFRTTTDTV 555 Query: 406 EETEIFIAATPFLVK 420 + + + P +V Sbjct: 556 VKKNLMVFIHPVIVD 570 >gi|307826274|ref|ZP_07656482.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96] gi|307732679|gb|EFO03548.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96] Length = 785 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 57/299 (19%), Positives = 101/299 (33%), Gaps = 33/299 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 AV + T KK++ L++ QV ++ + + +G + Sbjct: 488 AVVDARTNTLIVRETTKRLDEVKKLIRKLDVPVR-QVMIEARVVIADDSFTENLGVKFGA 546 Query: 220 -TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------------------- 255 +S G KSFA G + G + + Sbjct: 547 AKAASLGSGKSFAVGGSGTKGNGNLQPDANGNIGTLNDTLVDLGVAGLTATPPGALGMTL 606 Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 L AL+ ++ P + + +A G Q T ++ + T Sbjct: 607 ARGADYVLNLELQALQIEGKGEIVSNPRVMTMDRCTAVMMQGVQIPVTTPGTANTPPTTT 666 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGT 367 D + L+ TP + G + + + N P R+ T+V + G T Sbjct: 667 YIDAVLKLNATPQITPSGSVIMNLLITKDNANTTSNPVSGNPGIDKREIKTSVLVEDGET 726 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +VL G+ + K IP + +P +G LF NS N+ + E+ I TP ++K D Sbjct: 727 VVLGGVYEGAESYGKNKIPFFADLPGIGFLFTNSTTNKTKKELLIFVTPKIMKDNVASD 785 >gi|83720377|ref|YP_440567.1| general secretion pathway protein D [Burkholderia thailandensis E264] gi|167621024|ref|ZP_02389655.1| general secretion pathway protein D [Burkholderia thailandensis Bt4] gi|83654202|gb|ABC38265.1| general secretion pathway protein D [Burkholderia thailandensis E264] Length = 744 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 97/273 (35%), Gaps = 31/273 (11%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--- 240 V++ L+ QV ++ + E+ +G Q + ++ + G S Sbjct: 389 VIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLPTGGVGGGNSIVD 447 Query: 241 ---------------EGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 ++ + +L + L+ P L + Sbjct: 448 LTTRAATSAVGAISTLTPGLNIGWLHNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTLDN 507 Query: 283 QSASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + A G T +++ + D G+ LH P + G + L++ T Sbjct: 508 EEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYT 567 Query: 335 EVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 E S V N P++ R +TV +G IVL GL++D+ Q +PLL IP Sbjct: 568 EDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPW 627 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +G LFR+ R++T + + P ++ Sbjct: 628 IGQLFRSEGKTRQKTNLMVFLRPVIITDRETAQ 660 >gi|34499269|ref|NP_903484.1| type II secretion system protein [Chromobacterium violaceum ATCC 12472] gi|34105120|gb|AAQ61476.1| probable type II secretion system protein [Chromobacterium violaceum ATCC 12472] Length = 708 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 58/322 (18%), Positives = 107/322 (33%), Gaps = 38/322 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------AD 233 V++LL+ QV ++ + EV +IG Q + +G + Sbjct: 371 NVIDLLDKR-RAQVYVEALVMEVTASRATKIGVQWAANVHGNGLIGNSLPSPSKPLVPGG 429 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVL------------------HALERATAIRTLAEP 275 G S+ L + ALE+ +A P Sbjct: 430 SGASDTPGTALGSLVSSLTGGGLTAAIINTITVGGQQIPTLGLLAQALEQEAQGNLVASP 489 Query: 276 TLTAISGQSASFTSGGQHLYK--------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 L + + A G + +S+ ++ G L TP + G Sbjct: 490 QLVTMDNEKAKIVIGQEIGVPTATYPAGTNGTSNAPYSTYDRKTVGFGLEITPQISEGGT 549 Query: 328 IGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I ++I +A P++ R DT V + GG + L GL ++ ++ +P Sbjct: 550 IRMKISQAADSIDQTTLSAAAGPTFNRRTLDTVVTVGDGGLVALGGLTQETTSNAEDKVP 609 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 LL IP++G LF+ R++T + I P +++ + + Y + A Sbjct: 610 LLGDIPVIGNLFKYQGKERKKTNLMIFIRPTIIRDEIGNR-AVAGERYGYVMEDAARNVG 668 Query: 447 RVNKIYGPKEASEVEGQNYKGA 468 R + + + GA Sbjct: 669 RKLPLGLNDQLKTPAAGSIHGA 690 >gi|167717371|ref|ZP_02400607.1| general secretion pathway protein D [Burkholderia pseudomallei DM98] Length = 730 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 31/290 (10%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + + + V++ L+ QV ++ + E+ +G Q + Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 423 Query: 220 TGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVK-GVLDRFSFET 258 ++ + G +S G + + Sbjct: 424 ANNALYAGTNLTTGGVGGGNSIVDLTTRAATSAVGAISTISPGLNIGWLHNMFGIQGLGG 483 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTH 310 +L + L+ P L + + A G T +++ + Sbjct: 484 LLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRR 543 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIV 369 D G+ LH P + G + L++ TE S V N P++ R +TV +G IV Sbjct: 544 DVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTINNQSGPTFNKRSIQSTVLADNGEIIV 603 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 604 LGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 653 >gi|257454588|ref|ZP_05619844.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60] gi|257447898|gb|EEV22885.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60] Length = 813 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 31/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +N L+ DQV ++ I E+ + +Q+G Q ++ ++SG + G V Sbjct: 397 ENAINELDTR-RDQVLIQAAIMEISGNDTQQLGVQWAMGNANSGVGVINFNNIGASAVGL 455 Query: 242 G----------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G +R + +L A+ + L+ P++ Sbjct: 456 ASEILSKTPGTAAASVAGALLGIGTSKTDSNGNREFYGAILQAINKTNNANLLSMPSILT 515 Query: 280 ISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + A+ G + T S S+T +V+ D G+ L+ P + G + L I Sbjct: 516 LDNEKANILVGQNVPFVTGSYTTASNSSTTPFQTVSRQDVGINLNVIPHIGDNGSVRLEI 575 Query: 333 QTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS V G N TT+ T+ L GL++D+ ++ +P L Sbjct: 576 SQEVSSIVDGTLNNVSGVVTNKNLIKTTILADDQQTVALGGLMRDNSTYGQQKVPGLGDA 635 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 PILG LFR+ N ++T + + P +++ Sbjct: 636 PILGNLFRSKSKNSDKTNLIVFLQPTILR 664 >gi|330815003|ref|YP_004358708.1| General secretory pathway protein D [Burkholderia gladioli BSR3] gi|327367396|gb|AEA58752.1| General secretory pathway protein D [Burkholderia gladioli BSR3] Length = 787 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 108/331 (32%), Gaps = 46/331 (13%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------- 236 V++ L+ QV ++ I E+ +G Q + ++ S + G Sbjct: 393 VIDQLDER-RAQVYIEALIVELNSSTSANLGIQWQVANNALYAGSSLGSGINGVGNTITN 451 Query: 237 ----------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 +K + +L A + L+ Sbjct: 452 LTATAATTSLPNGVNSAAAAAATLSPGLNIGWLKNMFGITGLGALLQAFSGSNDANILST 511 Query: 275 PTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 P L + + A G + S+S + D G+ LH P + G Sbjct: 512 PNLVTLDNEEARIVVGQNVPIATGSYANLTSGSNSNAFNTFDRQDVGLTLHVKPQITEGG 571 Query: 327 RIGLRIQTEVSEPVIGVNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 + L+I TE S V + +P++ R +TV +G IVL GL++D+ Q Sbjct: 572 ILKLQIYTEDSSVVPSATSSGSSSSQVGVPTFNKRSIQSTVLCDNGEIIVLGGLMQDNYQ 631 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVED 438 +PLL IP +G LFR+ R +T + + P ++ + ++ Y Sbjct: 632 VGNNKVPLLGDIPWIGQLFRSEAKQRSKTNLMVFLRPVILSDEATTQAVTANRYDYIQGV 691 Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 N + + + +G Sbjct: 692 QGAYKSDNNLIRDKDDPVTPPMPLGPSQGGA 722 >gi|118592650|ref|ZP_01550040.1| general secretion proteinD [Stappia aggregata IAM 12614] gi|118434701|gb|EAV41352.1| general secretion proteinD [Stappia aggregata IAM 12614] Length = 789 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 62/282 (21%), Positives = 120/282 (42%), Gaps = 9/282 (3%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L R+ +++ V + V+ L++ QV ++ TI EV Sbjct: 452 LADTRRSSEEAVSIVPDVRNNALLVHSKFRQFKRIRDVVRTLDVPL-AQVVIEATIVEVA 510 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + + G Q ++G S D +D + VL AL+ Sbjct: 511 LNDRLKYGVQAFLSGEGVEIRSSRLPDPADTGEPGAVALFDVDSVDGTTATFVLEALQTV 570 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFT 319 T ++ ++ P LT + G++A + G Q + ++ + D GV+L T Sbjct: 571 TELKVISSPYLTVLDGKAARLSVGDQIPFLVQQTNASETGTTTTTNQIEVRDVGVILQVT 630 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P++ + L +Q EVS + ++ P R ++ V + SG +L GL++ Sbjct: 631 PSIRPDNSVLLNVQQEVSSAKSSGSGENLTPVISQRTINSDVVIESGKMALLGGLIQSRS 690 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++ +PL+SK+PI+G LF+ + ++ TE+ + TP +V+ Sbjct: 691 EEVTTKVPLMSKMPIVGNLFKQTDAVKDRTELLVMITPRVVR 732 >gi|297537339|ref|YP_003673108.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301] gi|297256686|gb|ADI28531.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301] Length = 608 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 58/299 (19%), Positives = 114/299 (38%), Gaps = 41/299 (13%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---------AADFG 235 ++ + + + QV ++ TI EV + + G S GS F A + Sbjct: 306 IDKVMGSAKKQVLIEATIVEVTLNDGYKAGIDWSRLGSLGSAGFVFKQALGPQLGAVNSA 365 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + + LE+ + L+ P L ++ Q+A +Y Sbjct: 366 ANVTLSSSGIIAGYTNGNRGILSSVQLLEQFGNTKVLSSPKLMVLNNQTAVLKVVDNLVY 425 Query: 296 KTVSSS--------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---- 337 TV S + T+ T GVV+ TP + G + + ++ ++ Sbjct: 426 FTVQSQISQSASGVAGTNLQSVTTTPNTVPVGVVMSVTPQINDTGNVNINVRPTITSLIR 485 Query: 338 -------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + + +P R R+ ++ +++ SG VL GL++D+I+ E +P LSK Sbjct: 486 YVPDPNPQIQKSPDFQGIPEIRTREMESLLQISSGNIAVLGGLMQDEIKNSTEAVPGLSK 545 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV-------KPVAMRDLSRPDDHYSVEDDAKA 442 +P +G +F+ + ++TE+ I P ++ +A P +A+A Sbjct: 546 VPGVGKVFQGKNDSNQKTELVIFLRPTVIPNASLESDELAHYKQYLPTQALERASEAEA 604 >gi|196233728|ref|ZP_03132568.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] gi|196222242|gb|EDY16772.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] Length = 621 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 53/336 (15%), Positives = 98/336 (29%), Gaps = 59/336 (17%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ + EV + + G T SS ++F+ S+ + Sbjct: 259 TQQVMIEARLVEVTANPKQSYGINWGGTVGSSSTPQTFSYGAPTVPGSQSVNLQTNPTTG 318 Query: 253 R------------------------------------------------FSFETVLHALE 264 + S L L Sbjct: 319 QVTPVIVNSQLPQLVTTNGKLTPGDFLMNGETRGGFGDLLASQFAILTVPSMSATLRLLN 378 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTHDYGVVLHFT 319 + LA P + + Q A+ ++ + ++G L T Sbjct: 379 EDSDAEFLAHPRVVTANNQKATIKIVRNQPIPQLNFNEQTAQAVFSGFQDKEFGNTLIVT 438 Query: 320 PTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 P++ I + +Q E+S P R D+ V + SG T+ + GL Sbjct: 439 PSINKDDFISMSVQPEISNKVADATFTFSGATVTSPVIDKRTLDSNVVIKSGDTLAIGGL 498 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L+D++ + + +P++ IPILG F+ R + + I TP ++K L Sbjct: 499 LQDEVTKGRTKVPVIGDIPILGYAFQERLNVRTKRNLLIFVTPTIIKQGYGTGLEDQVTG 558 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 + A N G + + Sbjct: 559 LHHSGEEYADPNGWRNNARGAVRLAPTAERQLAADY 594 >gi|329848228|ref|ZP_08263256.1| general secretion pathway protein D [Asticcacaulis biprosthecum C19] gi|328843291|gb|EGF92860.1| general secretion pathway protein D [Asticcacaulis biprosthecum C19] Length = 617 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 63/334 (18%), Positives = 124/334 (37%), Gaps = 15/334 (4%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 + + + + +++ + M+ + A S + G + Sbjct: 257 TTIRVWVYHPQGASAENLVKTLNAVVGTMSDVQVPAGS---ATSTGEAAAPAGTSSAPES 313 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIG 214 + + V + + + ++ ++ +L+ QV ++ +I EV G Sbjct: 314 NSQGVRIVADKATNTVIINAPEATRVRLQEVLSEIDREPAQVFIEASIVEVTLTKDLSYG 373 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S+ S S + F FS+ + + + AL + +R ++ Sbjct: 374 VDWEAIASNGDLSVSHFSTRSTGFGQIAPGFSINYLGN--DISAAVTALSSQSKVRIVSA 431 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGR 327 P + + A G Q T ++ + SV D GV+L TP + R Sbjct: 432 PKVATVENMPAVLQVGDQVPVVTQTAQSVVNGDAPVVNSVDYRDTGVMLKVTPRITGTNR 491 Query: 328 IGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L + EVS + D P+ RK D+++ +P G + L GL+ Q GIP Sbjct: 492 ILLEVSQEVSSVARTQTSGIDSPTINQRKLDSSLIVPEGTVVALGGLISSSDSQSDSGIP 551 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L IP++G +F+ NR TE+ + +++ Sbjct: 552 GLKDIPLIGGVFKGQSHNRNRTELIVLLKARILR 585 >gi|161523243|ref|YP_001578255.1| general secretion pathway protein D [Burkholderia multivorans ATCC 17616] gi|160340672|gb|ABX13758.1| general secretion pathway protein D [Burkholderia multivorans ATCC 17616] Length = 775 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 102/300 (34%), Gaps = 41/300 (13%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ I E+ Q+G Q + Sbjct: 374 IQADAATNSLIITASDPVYRNLRAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQV 432 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255 + + AA G + + + V Sbjct: 433 ASGALLAGTNLAATAGSVAGNSIINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLH 492 Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SS 300 +L + L+ P L + + A G T ++ Sbjct: 493 NMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTT 552 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTT 359 S + D G+ LH P + G + L++ TE S N+ PS+ R +T Sbjct: 553 SNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNSQTGPSFTKRSIQST 612 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G IVL GL++D +PLL IP +G LFR+ R++T + + P ++ Sbjct: 613 ILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII 672 >gi|254184073|ref|ZP_04890664.1| general secretion pathway protein D [Burkholderia pseudomallei 1655] gi|184214605|gb|EDU11648.1| general secretion pathway protein D [Burkholderia pseudomallei 1655] Length = 751 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 31/290 (10%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + + + V++ L+ QV ++ + E+ +G Q + Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 430 Query: 220 TGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVK-GVLDRFSFET 258 ++ + G +S G + + Sbjct: 431 ANNALYAGTNLTTGGVGGGNSIVDLTTRAATSAVGAISTISPGLNIGWLHNMFGIQGLGG 490 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTH 310 +L + L+ P L + + A G T +++ + Sbjct: 491 LLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRR 550 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIV 369 D G+ LH P + G + L++ TE S V N P++ R +TV +G IV Sbjct: 551 DVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTINNQSGPTFNKRSIQSTVLADNGEIIV 610 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 611 LGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 660 >gi|307293364|ref|ZP_07573210.1| general secretion pathway protein D [Sphingobium chlorophenolicum L-1] gi|306881430|gb|EFN12646.1| general secretion pathway protein D [Sphingobium chlorophenolicum L-1] Length = 716 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 59/293 (20%), Positives = 111/293 (37%), Gaps = 57/293 (19%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 +QV ++ I E+ K++G Q I + +G + + ++ ++ G + + + Sbjct: 348 TRREQVLVEAIIVEISDAAAKKLGVQFLIGSTKTGFAATNYSNAQPNLLTIAGAVAAREL 407 Query: 251 LDRFS---------------------------------------------------FETV 259 D + F + Sbjct: 408 GDSTTVEVNNGTTTTTTRSRNSSDLESTLQEAAFNSLTGASGIIGGLGTQIGRNGIFGAI 467 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGV 314 ++A++ T L+ P++ + Q AS G Q T + +V D G+ Sbjct: 468 INAVKSDTDSNILSTPSVMTLDNQKASILVGQQVPITTGEALSQNFDNQFRTVQRQDVGI 527 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 L P + + G I L ++ EVS V N+ R+ +TTV + G + L GL Sbjct: 528 KLEVKPQINTGGAIKLFLKQEVSSVAGPVSNSNTDLIINKREIETTVTVDDGEILALGGL 587 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L D+ ++ E IPLLS IP +G LF++ +R +T + + P +++ Sbjct: 588 LDDNERKTIERIPLLSDIPGIGELFKSRSKSRTKTNLMVFIRPTILRSKEDAQ 640 >gi|189348900|ref|YP_001944528.1| general secretion pathway protein D [Burkholderia multivorans ATCC 17616] gi|189332922|dbj|BAG41992.1| general secretion pathway protein D [Burkholderia multivorans ATCC 17616] Length = 768 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 102/300 (34%), Gaps = 41/300 (13%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ I E+ Q+G Q + Sbjct: 367 IQADAATNSLIITASDPVYRNLRAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQV 425 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255 + + AA G + + + V Sbjct: 426 ASGALLAGTNLAATAGSVAGNSIINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLH 485 Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SS 300 +L + L+ P L + + A G T ++ Sbjct: 486 NMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTT 545 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTT 359 S + D G+ LH P + G + L++ TE S N+ PS+ R +T Sbjct: 546 SNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNSQTGPSFTKRSIQST 605 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G IVL GL++D +PLL IP +G LFR+ R++T + + P ++ Sbjct: 606 ILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII 665 >gi|108759429|ref|YP_633909.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622] gi|108463309|gb|ABF88494.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622] Length = 901 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 97/287 (33%), Gaps = 35/287 (12%) Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 T + + ++ ++ L+ QV ++ I E + +G Q + Sbjct: 609 RTNVLIVKDVRSNTERARSLVRSLDTQTP-QVLIESRIVEANTSFSRSLGVQWGGQARAG 667 Query: 225 GPSKSFAA-------------------------------DFGGKFVSEGGDFSVKGVLDR 253 + + G+ V F+ Sbjct: 668 QATGNSTGLIFPNNLAVTGGVTGTGAGLPDNPNFAVNLPTGTGQGVGGAMGFTFGSAGGA 727 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 L A E +++T++ P +T + +A +S + T + Sbjct: 728 LQLNLRLSAAENEGSVKTISAPKVTTLDNNTARI--SQGVSIPFSQTSAQGVNTTFVEAR 785 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAG 372 + L TP + G + + I ++P PS + ++A+T V + G T V+ G Sbjct: 786 LSLEVTPHITQDGSVLMSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGG 845 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P LS+IP+LG LF+N+ E+ I TP ++ Sbjct: 846 IYVRRGATQVNSVPFLSRIPVLGLLFKNNSETDTRQELLIFITPRIL 892 >gi|325926645|ref|ZP_08187959.1| general secretion pathway protein D [Xanthomonas perforans 91-118] gi|325542997|gb|EGD14446.1| general secretion pathway protein D [Xanthomonas perforans 91-118] Length = 763 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 70/306 (22%), Positives = 116/306 (37%), Gaps = 34/306 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ET A SS + V+ L++ QV ++ +AEV G Sbjct: 444 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGALSYGVNWYF 502 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--------------SFETVLHALER 265 + + S S FGG + ++ G + + ++ AL++ Sbjct: 503 ENAVNAASDSTTYGFGGAGLPSAAGRNIWGDIAGKVTGTEGLAWSFLGKNAAAIITALDK 562 Query: 266 ATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 T +R L P++ + A+ + + + T +SV D GV+L Sbjct: 563 VTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGIGTDTSYSSVQYIDTGVILKVR 622 Query: 320 PTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 P V G + L I EVS P A R+ T + SG TI Sbjct: 623 PRVTKDGMVFLDIVQEVSSPGDRPAACTSATATINAAACNVDINTRRVKTEAAVQSGDTI 682 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +LAGL+ D +G+P LSK+P++GALF E+ + TP +V+ ++ Sbjct: 683 MLAGLIDDTTSDTSDGVPFLSKLPVVGALFGTKGKTSNRREVIVLITPSIVR--NPQEAR 740 Query: 429 RPDDHY 434 D Y Sbjct: 741 NLTDEY 746 >gi|149925604|ref|ZP_01913868.1| type II and III secretion system protein [Limnobacter sp. MED105] gi|149825721|gb|EDM84929.1| type II and III secretion system protein [Limnobacter sp. MED105] Length = 807 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 94/276 (34%), Gaps = 34/276 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++ L++ QV ++ I EV D + G Q G Sbjct: 424 SIIEKLDVR-RAQVFVESLIVEVSTDKAAEFGIQFQGLSGVGADGVRVIGGTNFNDPGSG 482 Query: 243 GDF-----------------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + ++ G+ + + ALE L+ P + Sbjct: 483 SNILGAATNLGSVGRGLNIGVIDGQVNIPGIGTISNLGFLARALESKANANILSTPNILT 542 Query: 280 ISGQSASFTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + A G + T + ++ D G+ L P V G + L Sbjct: 543 LDNEEAKIVIGQNVPFITGQFTNSGGNGATVNPFQTIERQDVGLTLRVKPQVSEGGIVKL 602 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 I EVS V N + R ++ V + +G IVL GL++D + +E +P L Sbjct: 603 GIFQEVSSVVDSTNVSGI-ITNKRSIESNVLVETGNIIVLGGLVEDRVTGNEEKVPGLGD 661 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +P+LG FR R++T + + P +V+ Sbjct: 662 VPVLGQFFRYDNRRRQKTNLMVFLRPVVVRNEDQAQ 697 >gi|91787225|ref|YP_548177.1| type II and III secretion system protein [Polaromonas sp. JS666] gi|91696450|gb|ABE43279.1| type II and III secretion system protein [Polaromonas sp. JS666] Length = 747 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 79/370 (21%), Positives = 128/370 (34%), Gaps = 50/370 (13%) Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 + L D L TLR +A + + V+ G S A + L+ S Sbjct: 313 VVYLKNADATKLATTLRAAMAANTLGAIAAGP--VVTGAPLPGPGSVAAAGAATATLTSS 370 Query: 172 GRNQYANSSSKKVMNLLNIAGED------------------QVTLKVTIAEVRRDILKQI 213 + + N L I + QV ++ IAEV D + Sbjct: 371 QPSTGGQIQADPSTNSLIITAPEPLYRQLRAVIDKLDARRAQVFVESLIAEVNADKAAEF 430 Query: 214 GFQHSI------------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 G Q G ++ + + A G S G + V + + Sbjct: 431 GIQFQGALGKKGDNNIGLLGTNFNIGGTNIITLATQAAAGVIAPSTGANLGVAHLTNGVY 490 Query: 256 FETVL-HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------- 305 L LE A L+ P L + + A G + T + T Sbjct: 491 VLGFLARFLEANGAGNILSTPNLLTLDNEEARIVIGQNVPFITGQYTNANTSAGSVNPFQ 550 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364 ++ D G+ L P + G + ++I EVS +N+ R ++ V + Sbjct: 551 TIERKDVGLTLRVKPQISENGTVKMQIFQEVSSVQPSSINSATGLITNKRSIESNVLVDD 610 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G +VL GLL+D+ E +P L IPILG LF+ +R++T + + P +V+ A Sbjct: 611 GAIVVLGGLLQDEYSGNVEKVPGLGDIPILGHLFKGETRSRKKTNLMVFLRPVVVRD-AP 669 Query: 425 RDLSRPDDHY 434 S D Y Sbjct: 670 SSESLSMDRY 679 >gi|311697132|gb|ADQ00004.1| type II and III secretion system protein [marine bacterium HP15] Length = 373 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 83/331 (25%), Positives = 133/331 (40%), Gaps = 18/331 (5%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + L + + D V + S + Sbjct: 19 PGEQHVLAFSAPLTKVSASN-PDVVSVTASAENEVLVTAEGPGSAAVRVWLQGQTSPQMT 77 Query: 181 SKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 V LL QV + I EV R L +G +S + + + + G F Sbjct: 78 EFNVSRLLGGRRSISSQVQTDIRIVEVNRSELNTLGVYYSKLFNGGSQTIALSPPGAGGF 137 Query: 239 VSEGGDFSVKGVLD--------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G G+ S ++++ALE TLAEP+L ++SGQ+A+F SG Sbjct: 138 RGFGPSAGATGITTEGFNLFSFGSSSLSIINALESGGFAYTLAEPSLVSLSGQTATFLSG 197 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAG 346 G+ VSS G + ++GV L TPTV+S I L++ EVSE + Sbjct: 198 GEFPIP-VSSDNGEVEIEFKEFGVSLALTPTVVSDDEIILKVAPEVSELDFTSGVSTGGV 256 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P R+R+ TTV + G + +++GL+ + IP L +P++GA FR+ R E Sbjct: 257 AVPGLRIRRTQTTVTMAPGESFIISGLVSRATTNRSDRIPGLGNLPVIGAFFRSDRVASE 316 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + E+ + TP V A + LSR ++ Sbjct: 317 DKELIMVVTPKFV--SAQKQLSREARNFGKA 345 >gi|791156|gb|AAA65694.1| mannose-sensitive hemagglutinin D [Vibrio cholerae] Length = 559 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 94/263 (35%), Gaps = 34/263 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235 QV + I EV Q G S SS+G + + G Sbjct: 273 RMHRQVISEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPG 332 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392 Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344 T SS + ++T G+ L TP + G + L + V E Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452 Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFRN+ ++TE+ I P +V Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535 >gi|260654164|ref|ZP_05859654.1| putative bacterial type II/III secretion system short domain protein [Jonquetella anthropi E3_33 E1] gi|260631149|gb|EEX49343.1| putative bacterial type II/III secretion system short domain protein [Jonquetella anthropi E3_33 E1] Length = 531 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 72/403 (17%), Positives = 130/403 (32%), Gaps = 52/403 (12%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISI---GLNKVIILQVPVDVQDVLVSDPTK 76 A + +S E+ + + GL II+ P V +S Sbjct: 133 GAPSAGCAKPAGQKEKRLTMSLTEVKVADALRLAAEGLKCSIIVDEPETSPTVTLS---L 189 Query: 77 ADVVVHSPRTMYL----FG-KNVGQA------NVILIGHDGKQMLNLDILIERD--IAHL 123 DV + +G +G +V+ + + D+ L Sbjct: 190 RDVTAQEALELITASAGYGWAKIGSTILVGPRSVLAARLGKNGLKSYDVFWADPGKTGAL 249 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 ++ + D + V+ + + + G ++ EL + Sbjct: 250 VKSIVGLVGDDAVSVDERRNRIYVKGT---PAQQEQVRELLAQLDEPA------------ 294 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 DQV +K I EV D ++ S S G F S Sbjct: 295 ----------DQVMIKARIIEVNDDATSEMESVLQAVYHQWWLSFSSGVASLGFFDSSSP 344 Query: 244 DFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + + L R LA+PT+ + G A+ + Y + Sbjct: 345 LAPSSGTAQGAGTVARMLDARIAGLVEKGKARVLADPTVVVLDGHKATIKLVDRVKYVSW 404 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRK 355 G + + G L TP V S G + + + E+ + G D+P R+ Sbjct: 405 RDDAGNPGYSDEEVGPRLEVTPRVGSEGGMTISMALKTGEIVQWKRGGLGEDVPQISERE 464 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++V + G V+ GL K+ + + + IP+L +P+LG+LF Sbjct: 465 VSSSVRVLDGQPFVVGGLFKESVSKTTQRIPVLGDLPLLGSLF 507 >gi|269792653|ref|YP_003317557.1| type II and III secretion system protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100288|gb|ACZ19275.1| type II and III secretion system protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 589 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 61/346 (17%), Positives = 131/346 (37%), Gaps = 28/346 (8%) Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMV--SDTVVLHGMVRTIQDSQRAVELSETFL 168 ++ + +L + + + + D + V+T+ + R + + E Sbjct: 243 TYAVMGRTILVGKADSLAKSLGQEKTKAFEISYGDVKQISAQVQTLFEITRPIAVDERLR 302 Query: 169 SQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + ++ ++ +N + G+ QV L+ I EV+ D ++++ + S Sbjct: 303 VMYVTGRPEQLAAVERFLNAADHPGK-QVMLQARIVEVKDDGVRELESVVNTVYRYWWLS 361 Query: 228 KSFAADFGG-----------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 S G ++ + + ALE A + Sbjct: 362 FSSKGGVLGYSRINQESVYKNDTNRVTKPGATDISAIAESGGLSLLDAGIKALENADKGK 421 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 TLA P++ + G+ A + Y + G + + G + F PTV G + + Sbjct: 422 TLASPSVVVVDGKEAKISLTENIKYISARDQAGNPTYSEEKVGPTMEFLPTVGRDGFVTI 481 Query: 331 RIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++ EV++ + G ++P R+ + V + G V+ GL +D + IP+ Sbjct: 482 KMTLKTGEVTKYIKGGLGEEVPQTSTREVTSYVRVRDGEPFVVGGLFRDSNTFSEYRIPV 541 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK----PVAMRDLSR 429 LS IP++G LF++ +E E+ + P ++ PV ++ Sbjct: 542 LSDIPLIGELFKSRTKKKERGEVAMIVIPHILDVPGSPVKTSEVHL 587 >gi|88797633|ref|ZP_01113222.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297] gi|88779805|gb|EAR10991.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297] Length = 709 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 96/254 (37%), Gaps = 37/254 (14%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS------------------------ITGSSSGPSKS 229 +QV ++ I R + Q+G + I G S P + Sbjct: 460 EQVLIEARIVSARTSVGDQLGVRWGGAIFPSQNVFATGTVESSASIESDIYGGSPNPDLT 519 Query: 230 FAADFGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 F F + G S L + + + ALE +++P + GQ+AS Sbjct: 520 FPDAFAVNLPATGNASSFAVGLIADNLLDLDLEISALESLGEAEVVSQPKIVTSDGQAAS 579 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 SG + T + G+ L+ TP V ++ L + G Sbjct: 580 IFSGQNVAFPAEDGGT-----QFIEAGLNLNVTPQVTPDDKVILTLTVNQDSLAAGGG-- 632 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + T V + +G T+VL G+ + + QL E P+L +P++G LF+ + + E Sbjct: 633 ---AIDTNTVSTQVLVENGVTLVLGGVYRTEKTQLVEKAPILGDLPVVGNLFKRTTTSDE 689 Query: 407 ETEIFIAATPFLVK 420 +E+ I TP L++ Sbjct: 690 RSELLIFITPKLIQ 703 >gi|42522439|ref|NP_967819.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100] gi|39574971|emb|CAE78812.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100] Length = 726 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 55/328 (16%), Positives = 121/328 (36%), Gaps = 22/328 (6%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 LE R S +V+ + + + D R V T + + Sbjct: 405 LEPLKVRMFPVSYAKVDELEKKIK-----DFLGDRGRVVGDVRTNALVVTDIEENLERAA 459 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSF 230 +++ L+ QV+++ I E + + IG S TG+ + PS + Sbjct: 460 RLIASLD-TQPAQVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSFNV 518 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G + + +V + + L E ++ ++ P + +S + A Sbjct: 519 NQSAAGSSGALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQT 578 Query: 291 GQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTE--VSEPVIGVNAG 346 + + V+ + AT + L TP V + G + +++ + Sbjct: 579 TEVPVRQVTQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQ 638 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + R+A+T V + +G T V+ G+ + D + G+P ++P + LF+ ++E Sbjct: 639 GAFAVNSREANTRVLVKNGQTAVIGGIYQSDATDGEVGVPWFRELPFVSYLFKTKNISKE 698 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++E+ I TP ++ + + + Sbjct: 699 KSELLIFLTPRIMGQIDNNAGNPTTTDF 726 >gi|11559475|dbj|BAB18788.1| GspD [Burkholderia cepacia] Length = 783 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 98/277 (35%), Gaps = 41/277 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 V++ L+ QV ++ I E+ +G Q + + A G + Sbjct: 400 SVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLAPTAGNGLGNSI 458 Query: 243 GDFSVKGVLDRFS-------------------------------FETVLHALERATAIRT 271 + + G+ + +L + Sbjct: 459 INLTAGGLTNAAGGITGGGLASNLGQLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANV 518 Query: 272 LAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVL 323 L+ P L + + A G + ++S + D G+ LH P + Sbjct: 519 LSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQIT 578 Query: 324 SPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G + L++ TE S V N+ P++ R +T+ +G IVL GL++D+ Q Sbjct: 579 DGGILKLQLYTEDSAVVNGTTNSQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSN 638 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP +G LFR+ R +T + + P ++ Sbjct: 639 SKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII 675 >gi|260220229|emb|CBA27559.1| Fimbrial assembly protein pilQ [Curvibacter putative symbiont of Hydra magnipapillata] Length = 696 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 66/369 (17%), Positives = 134/369 (36%), Gaps = 39/369 (10%) Query: 87 MYLFGKNVG--QANVILIGHDGKQMLN---LDILIERDIAHLEMTLRRFIADSNIRVEMV 141 + L K +G + +L ++ LD+ + +LE + + + + Sbjct: 324 IILQAKGLGMRKTGNVLWVAPKDEIAAKEKLDLETVVAVQNLEPLRTQAFQINYGKAADI 383 Query: 142 SDTVVLHGMVRTI-QDSQRAVELSETFLSQSGRN----QYANSSSKKVMNLLNIA--GED 194 + ++ G + R + + + ++ N S ++V L+ Sbjct: 384 AAGLIAAGSGPGQGVTASRILSSRGSVIFETRTNQLFVTDIPSKLEQVQQLIAKIDIAVR 443 Query: 195 QVTLKVTIAEVRRDILKQIGFQHS--------------------ITGSSSGPSKSF---- 230 QV ++ I E K +G + + GS++ S +F Sbjct: 444 QVLIEARIVEASDSFGKSLGVKLGGGGTAAASGDKPGIALGSSYVVGSAATTSGNFVNLP 503 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + G S+ G + ALE + ++ P + A G Sbjct: 504 STGALGSSTPGQFAVSIFGAGADRFLNLEISALEAEGKGKVVSSPRVVTADQIKALIEQG 563 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ V+SS+GATS+ + L P + G I L +V++ +G + + Sbjct: 564 TELPYQ-VASSSGATSIAFRKANLKLEVLPQITPEGNIIL--TLDVTKDTVGQSTPAGFA 620 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +P +P LG LFRN + E+ Sbjct: 621 IDTKHVQTQVLVENGGTVVIGGIFTESSTDSETKVPFFGDLPGLGVLFRNRAKEITKREM 680 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 681 LVFITPKVI 689 >gi|255595286|ref|XP_002536270.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus communis] gi|223520239|gb|EEF26113.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus communis] Length = 536 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 65/359 (18%), Positives = 133/359 (37%), Gaps = 42/359 (11%) Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G V + D E I + + + I+ + +D L + Sbjct: 177 GNTLVFAPKEEIAARRKQDQEQENQIDETKPLVTQSF---QIKYQKAADIKTLISDPKQP 233 Query: 155 QDSQRAVELSETFLSQS--GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 S+R + + + + + ++++N ++I QV ++ I + K Sbjct: 234 LLSKRGTAVVDPSTNTMFVKDIDTSMTKIQEILNKIDIPSR-QVLIESRIVQANDTFGKS 292 Query: 213 IGFQHSITGSSSGPSKSFAAD---------------------------------FGGKFV 239 +G + + +++ +K Sbjct: 293 LGARFGVVKNNALTAKGLNPGNDVLTSGSLSSTYATGQAKQTTTPDDLNVNLPASATAGT 352 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 ++ + F L A E + I+T++ P + + Q+A+F +G + Y+ + Sbjct: 353 VSSAALTLLRLPAGFLLNMELSAAESDSKIKTISSPRVITANQQTATFDAGTEIPYQQAT 412 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 SS GATSV+ + ++ TP + +I L EV++ +G +PS K T Sbjct: 413 SS-GATSVSFKKATLGVNVTPQITPDDKINLD--IEVTKDDVGQIFNGVPSIDTNKVKTK 469 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + +G T VL G L + + +P S IP++G LF+++ + E+ TP + Sbjct: 470 VLVDNGETAVLGGFLIESKNDSNQRVPFFSSIPVVGNLFKSTLNTHSKKELLFFITPKI 528 >gi|221202224|ref|ZP_03575259.1| general secretion pathway protein D [Burkholderia multivorans CGD2M] gi|221208715|ref|ZP_03581714.1| general secretion pathway protein D [Burkholderia multivorans CGD2] gi|221214336|ref|ZP_03587308.1| general secretion pathway protein D [Burkholderia multivorans CGD1] gi|221165991|gb|EED98465.1| general secretion pathway protein D [Burkholderia multivorans CGD1] gi|221171347|gb|EEE03795.1| general secretion pathway protein D [Burkholderia multivorans CGD2] gi|221178018|gb|EEE10430.1| general secretion pathway protein D [Burkholderia multivorans CGD2M] Length = 768 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 57/300 (19%), Positives = 102/300 (34%), Gaps = 41/300 (13%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ I E+ Q+G Q + Sbjct: 367 IQADAATNSLIITASDPVYRNLRAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQV 425 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255 + + AA G + + + V Sbjct: 426 ASGALLAGTNLAATAGSVAGNSIINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLH 485 Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SS 300 +L + L+ P L + + A G T ++ Sbjct: 486 NMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTT 545 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTT 359 S + D G+ LH P + G + L++ TE S NA PS+ R +T Sbjct: 546 SNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNAQTGPSFTKRSIQST 605 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G IVL GL++D +PLL IP +G LFR+ R++T + + P ++ Sbjct: 606 ILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII 665 >gi|223938688|ref|ZP_03630578.1| type II and III secretion system protein [bacterium Ellin514] gi|223892676|gb|EEF59147.1| type II and III secretion system protein [bacterium Ellin514] Length = 785 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 96/265 (36%), Gaps = 23/265 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH---------------SITGSSSGPSKSFAADFGGKFV 239 QV ++ I EV D + +G + +I +FA+ Sbjct: 493 QVLIEAIIMEVTLDDTRDLGVSYLQTSPSGNNYFQGIGAIKNGPFASFSNFASTATNAAN 552 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S FS + F + A I L+ P + +A+ G Y T + Sbjct: 553 SLPSGFSYLAQFNN-DFSATITAAATDNRINVLSRPRIQTSHAVTANLQIGDTVPYVTGT 611 Query: 300 -----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYR 352 + ++ G+ L TP + G + + I +V + + +P+ Sbjct: 612 YFGGLNGQASSQYQQTFVGINLQVTPLINPDGLVVMDITQDVQQLGTPTIIDNNPVPTTT 671 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A V + TI+L G + + K G+PLL IP+LG LFR++ + + TE+ + Sbjct: 672 KRTAQAKVSVKDRDTIILGGFISSTKSRSKSGVPLLMNIPVLGYLFRSTSDSNKRTELIV 731 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVE 437 P ++ L + + Sbjct: 732 LIRPTVLPTPEAAALVATRERDRLP 756 >gi|107021570|ref|YP_619897.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054] gi|116688086|ref|YP_833709.1| general secretion pathway protein D [Burkholderia cenocepacia HI2424] gi|105891759|gb|ABF74924.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054] gi|116646175|gb|ABK06816.1| general secretion pathway protein D [Burkholderia cenocepacia HI2424] Length = 774 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 94/269 (34%), Gaps = 33/269 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 V++ L+ QV ++ I E+ + +G Q + + G Sbjct: 399 SVIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQVASGQFLGGTNLNPTGGLGNSIIN 457 Query: 236 ----------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + + +L + L+ P L Sbjct: 458 LTTGGTAATAGLAANLANLNQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLIT 517 Query: 280 ISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + A G + ++S + D G+ LH P + G + L+ Sbjct: 518 LDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQ 577 Query: 332 IQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + TE S V NA P++ R +T+ +G IVL GL++D+ Q +PLL Sbjct: 578 LYTEDSAVVAGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGD 637 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP +G LFR+ R +T + + P ++ Sbjct: 638 IPWIGQLFRSETKQRAKTNLMVFLRPVII 666 >gi|262193577|ref|YP_003264786.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365] gi|262076924|gb|ACY12893.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365] Length = 1269 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 86/260 (33%), Gaps = 34/260 (13%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---FGGKFVSEGGDFSV 247 Q+ ++ I E R ++ G Q + + F + GG S+ V Sbjct: 1003 TQTPQIQIEARIVEARSTFAREFGVQWGGSLLDANTGLVFPGNYGVVGGNTDSQTVGTGV 1062 Query: 248 K---------------------------GVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 V + L ALE +R ++ P +T + Sbjct: 1063 AAASPDFAVNLPAATGTGAGGALGFAFGSVGGGLNLTLRLSALEDTGTVRIISAPKITVL 1122 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339 + A S + L TP V I + +Q + +E Sbjct: 1123 NNVEA--EISQGVSIPISVISANGVQTQFVQADLSLEVTPHVSQRDCSIAMDLQIQKNEA 1180 Query: 340 VIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P+ ++A TTV + T V+ G+ + +P L +P+LG LF Sbjct: 1181 DFVNTGARGDPTILRKEASTTVLVADNETTVIGGIYTRNSGLSYSKVPFLGDLPLLGWLF 1240 Query: 399 RNSRFNREETEIFIAATPFL 418 +N R N E TE+ + TP + Sbjct: 1241 KNRRENDERTEVLVFITPRI 1260 >gi|83648789|ref|YP_437224.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC 2396] gi|83636832|gb|ABC32799.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC 2396] Length = 561 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 103/277 (37%), Gaps = 29/277 (10%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------SSS 224 ++ ++ ++ + + QV L+V I EV + + G S S Sbjct: 259 ATPSELTAVEEYLDKAQLVMQRQVILEVKILEVVLNKGFEQGVNWSYFDEFTSKVDASGD 318 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + G + L F T+L L ++ L+ P ++ I+ Q Sbjct: 319 PTKSLTLGQTSRSVTNPGLEGVFSAALRINDFTTLLQLLGEQGTVQVLSSPRISTINNQK 378 Query: 285 ASFTSGGQHLYKTVSSSTGAT------------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A G + T + AT +T G+ L TP + G + L + Sbjct: 379 AVIKVGDDEFFVTGIETNDATTTSGTSNLISEVEITPFFSGIALDVTPQIGENGDVTLHV 438 Query: 333 QTEVSEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 VS+ + + VR+ D+ ++ +G +V+ GL+++ ++ + Sbjct: 439 HPTVSDVEDQTKTISLGANDLVLPLAFSSVRETDSVIKARNGQVVVIGGLIRNLTEKTQA 498 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +PLL IP+LG FR R ++E+ I P + Sbjct: 499 KVPLLGDIPLLGHAFRQKRDTELKSELVILIRPIIAD 535 >gi|91786687|ref|YP_547639.1| type II and III secretion system protein [Polaromonas sp. JS666] gi|91695912|gb|ABE42741.1| type II and III secretion system protein [Polaromonas sp. JS666] Length = 717 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 36/257 (14%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------------------------T 220 QV ++ I E K +G + Sbjct: 455 RQVLIEARIVEASDTFGKSLGVRLGGRPFTLNGNRNAMFGATYIAPDITATSGAVRGQNF 514 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G+++G + + S+ + A E + ++ P + Sbjct: 515 GTTAGDFVQLPGVGQNGYPASTFAISLFNSSVTRLLNLEISAAEADGKGKIVSSPRIVTA 574 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 A G + Y+ +SS GATS+ + L TP + G I L +V++ Sbjct: 575 DQVKALIEQGTELPYQQATSS-GATSIAFRKANLKLEVTPQITPEGNIIL--NVDVNKDS 631 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +G + + + T V + +GGT+V+ G+ + + ++ + +PLL +P +G LF+ Sbjct: 632 VGRATANGFAIDTKHIQTQVLVENGGTVVIGGIFEQNDREDETKVPLLGDLPAIGNLFKT 691 Query: 401 SRFNREETEIFIAATPF 417 ++E+ + TP Sbjct: 692 KTRTASKSELLVFITPK 708 >gi|284097759|ref|ZP_06385757.1| Type II secretory pathway, component PulD [Candidatus Poribacteria sp. WGA-A3] gi|283830734|gb|EFC34846.1| Type II secretory pathway, component PulD [Candidatus Poribacteria sp. WGA-A3] Length = 406 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 100/273 (36%), Gaps = 15/273 (5%) Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + L+N+ QV ++ I E+ +G S Sbjct: 132 VVNRLSGTIQVTDLHRRVEEVATFLVNVRNSLYRQVEIQARIYEIALRDEYSLGVDWSRI 191 Query: 221 GSSSGPSKSFAADFGGKFVSE--GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + A+ + + FE V+ AL+ ++ +++P + Sbjct: 192 ALRTPKGSFKLANIITAPAGGFLSRAATAAFSFNDGDFEGVIQALQEQGDVQVVSQPRIL 251 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ Q A G + T +++ G V T G+VL TP + G I + Sbjct: 252 TLNNQPALIKVGTDQSFFTSTTTQGTAGAGNIVTEQVRTVTSGLVLSVTPQISRDGWIMM 311 Query: 331 RIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + ++ V N P V+++ V + G +++ GL+++ + + +P Sbjct: 312 DVSPIITRLTDTVESRNGSTAPVLEVKQSGGLVRIRDGQLVMIGGLIQEQLTNTERAVPF 371 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L +P+LG+ F + TE+ I P +++ Sbjct: 372 LGDLPVLGSFFSGTYQAERNTELVIFLMPRILR 404 >gi|91775689|ref|YP_545445.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91709676|gb|ABE49604.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 653 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 72/396 (18%), Positives = 142/396 (35%), Gaps = 46/396 (11%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + T+ ++ + + + L D L ++ + +I ++ Sbjct: 256 KVLNDNTLLIYP-------LSRSQEYQETFVRSFYLSNTDAKKLMAMIKTVVKTKDIYID 308 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 +T+V+ A+ +E + E +V L+ Sbjct: 309 EKLNTLVMRDTP-------EAIRTAEKLIMSQDM------------------AEPEVMLE 343 Query: 200 VTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 V + E+ R L+ IG ++ + G + + S GV Sbjct: 344 VEVLEINRRSLENIGIRYPTNVSLDVQGRDTVNGTTTLTPGKLTINELKNFNSNLGVFSI 403 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTH 310 L+ L++ T LA P + + + A G + T +++ + +V Sbjct: 404 SDPVLALNLLQQDTDTNLLANPHIRVKNREKAKIHVGDRIPVLTSVANSTGFISQTVNYI 463 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSGGT 367 + GV L PT+L + ++I EVS + + R A T + L G T Sbjct: 464 EVGVKLDVEPTILLRDEVSIKIGLEVSNQTDRMETSSGTVTYTIGTRNASTILRLKDGET 523 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +LAGL+++D Q++ G+P LSK+P++G LF N+ + + EI + TP ++ + + Sbjct: 524 QILAGLMRNDEQKITNGVPGLSKLPLIGKLFNNNNNDLSKKEIALFITPRIISNLTPENA 583 Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 + D A R + + Sbjct: 584 IYTT--FPAGIDRSASRPGRAAEPGTVTAQAAPATP 617 >gi|21241466|ref|NP_641048.1| type II secretion system protein D [Xanthomonas axonopodis pv. citri str. 306] gi|21106808|gb|AAM35584.1| type II secretion system protein D [Xanthomonas axonopodis pv. citri str. 306] Length = 692 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 75/397 (18%), Positives = 143/397 (36%), Gaps = 43/397 (10%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 DP VV + + + G +V+ L +Q+L + + E + + Sbjct: 234 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQVGQD 293 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + I V S + V + + + V+ L++ Sbjct: 294 TRLATIDVAAASGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 353 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246 +QV ++ + E+ K++G Q + G + ++ A G ++ + Sbjct: 354 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLVATQYSGASPGIVPLAAAAAGT 412 Query: 247 VKGVLDRFS-------------------------------FETVLHALERATAIRTLAEP 275 G D S F ++ A++ T L+ P Sbjct: 413 RSGNADDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 472 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ + + A G + T + ++ D GV L P + + G I L Sbjct: 473 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 532 Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I+ EVS V+A + R+ +T V + +G + L GLL + +Q E +PLL Sbjct: 533 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 592 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +P LGALFR+ NR++T + + P +++ A Sbjct: 593 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQ 629 >gi|124268293|ref|YP_001022297.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1] gi|124261068|gb|ABM96062.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1] Length = 721 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 97/281 (34%), Gaps = 41/281 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG------------FQHSITGSSSGPSKSF 230 +++ ++I QV ++ I E + +G I G+ G + Sbjct: 444 QIIARIDIPVR-QVLIEARIVEATDTFGRSLGAKLGATVAPSSKVNAGIGGNYLGIGAAT 502 Query: 231 AADFG-------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + + S+ + ALE Sbjct: 503 GQAPPINSSGLTTGTPSTNSYFVNLPAVGQNGYDAATFAVSIFNSAMNRFLNLEISALEA 562 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + ++ P + A G + Y+ ++S+GAT++ + L P + Sbjct: 563 DGKGKIVSSPRVVTADQVKALIEQGTEIPYQ-TATSSGATAIQFRKATLKLEVIPQITPE 621 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G I L +V++ G + T V + +GGT+V+ G+ + Q + Sbjct: 622 GNIILD--VDVNKDSPGATTAAGILINTKHVKTQVLVDNGGTVVIGGIYEQTEQIDNTKV 679 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 PLL +P+LGALFR+ +TE+ + TP +V Sbjct: 680 PLLGDVPVLGALFRSQTRTSNKTELLVFLTPKVVTDRTAAA 720 >gi|58580784|ref|YP_199800.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425378|gb|AAW74415.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 673 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 47/281 (16%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223 DQV ++ I + +G + I G++ Sbjct: 391 RPVDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNTSAKRASEIA 450 Query: 224 ------------SGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIR 270 + GG F + G + + F+ + L A+++ Sbjct: 451 NGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELSAMQQEGRGE 510 Query: 271 TLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 ++ P + + + G + + + + +V + + L TPT+ + Sbjct: 511 VVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELKVTPTITNDN 570 Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 R+ L + + E ++ G +P R+ +T V + G T+V+ G+ + ++ Sbjct: 571 RVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVYEFTDRESVS 630 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 +P L IP LG LF+ ++E+ E+ + TP +++ + Sbjct: 631 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 671 >gi|241762850|ref|ZP_04760913.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN] gi|241368025|gb|EER62230.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN] Length = 712 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 88/266 (33%), Gaps = 41/266 (15%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------------------- 225 QV ++ I E R + +G + T + Sbjct: 443 AVRQVLIEARIVEARDSFGRSLGVRLGGTDLRANRGGDGGYGIGGDNRVAFGTSYNNAVA 502 Query: 226 ------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 + A S+ L A+E R ++ Sbjct: 503 SSGAGGTTTTTGNFVNLPASLSNVNSVGSFALSIFNSAANRFLTLELSAMEADGKGRIVS 562 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 P + A G ++ Y + GAT++ + L TP + G I L Sbjct: 563 SPRIITADQTKALIEQGTEYPYSITAP-NGATTLAFKKAVLKLEVTPQITPEGNIILD-- 619 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 ++++ G + + T + + +GGT+V+ G+ + + + IP+L +P+ Sbjct: 620 LDINKDSRGETTTQGVAIDTKHIKTQILIENGGTVVIGGIFEMEDTNQENKIPVLGDVPV 679 Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419 +G LF++ + E+ + TP ++ Sbjct: 680 VGNLFKSRTKESTKREMLVFITPKVI 705 >gi|197117672|ref|YP_002138099.1| type II secretion system secretin lipoprotein PulQ [Geobacter bemidjiensis Bem] gi|197087032|gb|ACH38303.1| type II secretion system secretin lipoprotein PulQ [Geobacter bemidjiensis Bem] Length = 868 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 75/420 (17%), Positives = 150/420 (35%), Gaps = 72/420 (17%) Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 D + + T+ ++ K + + + L L + D +R + I Sbjct: 241 LDKKILNESTIIIYPKTPDK-----VKQYEELFLQTFYLNKLDAKKAVNLVRTMLQVKKI 295 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V ++ +V+ I+ +++ +E AN +V Sbjct: 296 YVNEEANALVIRDTPEVIEVARKILE--------------ANDVPD-----------AEV 330 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV----------------S 240 L+V + E+ + + G S +S G + + S Sbjct: 331 LLEVEVFELSKQNAETFGLLLSRYATSLGVTAPGSTGTNPFLADTLGAVTTTTTTGTTTS 390 Query: 241 EGGDFSVKGVLDRFSFE-------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G ++ V + + + + + TL+ P + + + A F G + Sbjct: 391 SAGPSNLLNVFNLRGYNGYLTVPNATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRV 450 Query: 294 LYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNA 345 T SS + +V D GV ++ PT+ + +++ EVS + A Sbjct: 451 PITTTSSPSGGGVSVNVQYVDVGVKVNAEPTIQLNNEVAIKLGLEVSSILNEKTIGTDQA 510 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + + R DT + L G T ++ GL++ K + LL IPILG LF N+ + Sbjct: 511 TTVVTIGTRNLDTVLSLKDGETSIIGGLIQKTQTDSKSKVFLLGDIPILGPLFSNTSDKK 570 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 ++TE+ +A TP +V+ V ++D AF+ R ++ + S ++ Sbjct: 571 DKTELLLAITPRIVRGV-----------TVPDNDVAAFWSGREDEPSSHQPYSSFMEPDF 619 >gi|330820184|ref|YP_004349046.1| type II and III secretion system protein [Burkholderia gladioli BSR3] gi|327372179|gb|AEA63534.1| type II and III secretion system protein [Burkholderia gladioli BSR3] Length = 697 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 83/446 (18%), Positives = 157/446 (35%), Gaps = 46/446 (10%) Query: 2 RYLQRTFF--TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII 59 R L+ T S + P + I I + ++ + + Sbjct: 151 RRLRDALLRDTKASRAARPQLADALRKPVSLNFRSQPIGRIFEAISRVSGVNFVFDSEVQ 210 Query: 60 LQVPVD-VQDVLVSDPTK--------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 +P ++ + V T+ ++ +A + + Sbjct: 211 ADMPASLFARRTTAENAIELLLRTSQLEKRVLDRHTLLVYPARPEKA-----RDYREFAI 265 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 L + + LR+ + +I V+ + +VL TIQ + Sbjct: 266 RTFFLSHAEAKSVMAALRQMVKPKDIYVDERVNAIVLRDTPETIQVA------------- 312 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 ++V+ L+I + VTL V + EV + +G Q+ S Sbjct: 313 -----------ERVVIGLDIPQSE-VTLDVQVLEVNVNDSVDLGLQYPGKIQFSALGAGE 360 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + + + + + L++ RTLA P + + + A+ G Sbjct: 361 EVGLTLGDLLRLNRDRIGVASESGALSMAIDMLQKQGKTRTLANPKIRVRNLEKANIRIG 420 Query: 291 GQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNA 345 + T ++ G SV+ D G++L P V + +++ EVS + Sbjct: 421 ERVPIVTTTNGNGVVTESVSYQDVGLMLKVQPRVSLDDEVSVKVSLEVSNILSEQRTRSG 480 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 S R ADT + +G T VLAGL+K + + G+P LS +P+LG LF + R Sbjct: 481 LVAYSLGTRNADTLMTARNGQTQVLAGLIKRSEIESRAGLPWLSSLPVLGRLFGSERTRN 540 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPD 431 EETEI + TP + + + + + + Sbjct: 541 EETEIVLLITPHIERRLDLPEAAVTT 566 >gi|162146314|ref|YP_001600773.1| general secretion pathway protein D [Gluconacetobacter diazotrophicus PAl 5] gi|209543683|ref|YP_002275912.1| general secretion pathway protein D [Gluconacetobacter diazotrophicus PAl 5] gi|161784889|emb|CAP54432.1| putative general secretion pathway protein D [Gluconacetobacter diazotrophicus PAl 5] gi|209531360|gb|ACI51297.1| general secretion pathway protein D [Gluconacetobacter diazotrophicus PAl 5] Length = 772 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 70/323 (21%), Positives = 114/323 (35%), Gaps = 17/323 (5%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDI 209 + + +A+ + + + S V +L QV + IAEV+ + Sbjct: 438 ASAEGRPQAMRIISNSQHNAILVYGTDQESDTVEQMLRRIDVMPLQVRIDAVIAEVQLND 497 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------VKGVLDRFSFETVLHAL 263 Q G Q S + FS + G + AL Sbjct: 498 ALQYGTQFFFKSGGINGVLSTNSQTITTGTLATAAFSHTLPGFIIGGASGGGAPFAIDAL 557 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-----ATSVTTHDYGVVLHF 318 + T + L+ P L ++A G + S S+ T GV++ Sbjct: 558 QNVTTVHVLSSPQLMVQDNRAARLQVGQLVPVQIGSQSSTIGTSIYNQFTYQPTGVIMQV 617 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLL 374 TP V G + L + EVS + P++ R + V + G T+ LAGL+ Sbjct: 618 TPHVSEGGLVTLDVSQEVSSVSPTAASTANAASNPTFNDRSVSSRVVVQDGQTVGLAGLI 677 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 D ++ GIP L IP+LG L N NR+ TE+ I TP ++ D Sbjct: 678 TDSSSRINSGIPWLKNIPVLGVLAGNQNNNRQRTELLILMTPHVIHDQRDAVDLMEDLRD 737 Query: 435 SVEDDAKAFFFNRVNKIYGPKEA 457 + + A RV ++ G + Sbjct: 738 THPNAANVPDELRVMRMTGSADP 760 >gi|59712900|ref|YP_205676.1| pili ecretion protein PilQ [Vibrio fischeri ES114] gi|59481001|gb|AAW86788.1| pili ecretion protein PilQ [Vibrio fischeri ES114] Length = 582 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 84/454 (18%), Positives = 157/454 (34%), Gaps = 57/454 (12%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 PS+ + + IS K K ISI + + V + D + AD Sbjct: 130 GPSLQVVVSQLPESEKKSPISSNNEDKSKPISINFQDIPVRHVLQLIADYNDFNLVVAD- 188 Query: 80 VVHSPRTMYLFG------------------KNVGQANVILIGHDGKQMLNLDILIERDIA 121 V T+ L G + G +I + + + + Sbjct: 189 SVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVEGNVVLIAPKTELDAQEQQVLEQAQMAS 248 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L ++ + +++ +V G + + T + Sbjct: 249 ELAALSSEILSIKYAKASDIAELLVGEGEITMLSSRGSITVDERTNSLLLRDLPENITVI 308 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 K +++ L+I + QV ++ I V L ++G + IT ++ + + + V Sbjct: 309 KDIIDTLDIPIK-QVQIEARIVTVNEGNLDELGVRWGITNTNGSTTVGGSIESNLAAVGL 367 Query: 241 --EGGDFSVKGVLDRFSFETVLHA-------------------------------LERAT 267 GG K + + L+ L+ + Sbjct: 368 YDGGGSDDKKSGNNSLPVDDFLNVNLGLANPAASSIAFQVAKLGSDLLLDLELSALQAES 427 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P L + + A G + Y SS+GATSV+ + L TP + R Sbjct: 428 KAEIISSPRLITTNKKPAYIEQGTEIPYLEA-SSSGATSVSFKKAVLSLMVTPQITPDNR 486 Query: 328 IGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L + P V+ G+ + ++ T V + +G T+VL G+ + + E + Sbjct: 487 LVLDLTVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVDNGETVVLGGIYQHSLSNSVEKV 546 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P+L +P+LGALFR S N + E+ I TP +V Sbjct: 547 PVLGDLPLLGALFRRSSENIGKKELLIFVTPKVV 580 >gi|46398274|gb|AAS91828.1| AscC [Aeromonas hydrophila] Length = 618 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 53/315 (16%), Positives = 102/315 (32%), Gaps = 20/315 (6%) Query: 116 IERDIAHLEMTLRRFIADSNIR-VEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQS 171 + + L L R ++D+ ++ V V G D + + Sbjct: 212 TDVEAPGLATILARLLSDAGVQMVNGEGNKKGAAVTSGQAIVQADPSLNAVIVRDTPERM 271 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 ++ K + +A I ++ + L Q+G + + + Sbjct: 272 AMYGKLIAALDKPAARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVII 323 Query: 232 ADFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G S+ ++ LE + ++ PTL A Sbjct: 324 KTTGDRKGIEGAAALGSLVDSKGLDYLLARVNLLENEGNAQVISRPTLLTQENTQAVIDH 383 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT---VLSPGRIGLRIQTEV-SEPVIGVNA 345 + K S + YG +L TP + I L + E S+ G A Sbjct: 384 SETYYVKI--SGERVAELQGITYGTMLRMTPRVVQMWDKPEISLSLHIEDGSQKPNGTGA 441 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ + DT + G ++++ G+ +D++ + +P L IP LGALFR+ Sbjct: 442 DGLPTIQRTVVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRSKDTQT 501 Query: 406 EETEIFIAATPFLVK 420 + P L+ Sbjct: 502 RRSVRLFIIEPRLID 516 >gi|39995438|ref|NP_951389.1| general secretion pathway protein D [Geobacter sulfurreducens PCA] gi|39982201|gb|AAR33662.1| general secretion pathway protein D, putative [Geobacter sulfurreducens PCA] Length = 632 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 96/249 (38%), Gaps = 12/249 (4%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSE 241 +V+ L+ QV ++ IAEV D LK +G Q + G + A F+S Sbjct: 349 QVIQKLDKR-RRQVFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLDPFNFLSA 407 Query: 242 GGDFSVKG------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + S + AL AI L+ P + + A G + Sbjct: 408 TSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPF 467 Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 + S+ D G+ L TP + + L I E+S + Sbjct: 468 LSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVT 527 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R A T V + T+V+ GL++D + IPLL IP+LG LF+ RE+T + Sbjct: 528 TKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKSTRREKTNLM 587 Query: 412 IAATPFLVK 420 I TP +++ Sbjct: 588 IVLTPRIIR 596 >gi|307634685|gb|ADI83160.2| type II secretion system lipoprotein GspD, putative [Geobacter sulfurreducens KN400] Length = 632 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 96/249 (38%), Gaps = 12/249 (4%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSE 241 +V+ L+ QV ++ IAEV D LK +G Q + G + A F+S Sbjct: 349 QVIQKLDKR-RRQVFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLDPFNFLSA 407 Query: 242 GGDFSVKG------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + S + AL AI L+ P + + A G + Sbjct: 408 TSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPF 467 Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 + S+ D G+ L TP + + L I E+S + Sbjct: 468 LSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVT 527 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R A T V + T+V+ GL++D + IPLL IP+LG LF+ RE+T + Sbjct: 528 TKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKSTRREKTNLM 587 Query: 412 IAATPFLVK 420 I TP +++ Sbjct: 588 IVLTPRIIR 596 >gi|288817748|ref|YP_003432095.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] gi|288787147|dbj|BAI68894.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] gi|308751347|gb|ADO44830.1| type II and III secretion system protein [Hydrogenobacter thermophilus TK-6] Length = 700 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 66/351 (18%), Positives = 137/351 (39%), Gaps = 19/351 (5%) Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 T+ +F + +G ++ +I + + + ++ ++ + E + Sbjct: 326 NTLGIFEEGIGISSQQ-QAQTEAPRSTQEITKIQALPPTDQKPKQTTPETQ-KKEEMPPA 383 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------KKVMNLLNIAGEDQVTL 198 V+ ++ ++ V++ +S ++ + ++ L++ QV + Sbjct: 384 VIEEKAKSEAKEEKKIVKVGNIVADKSTNTLIIKATPIEFEVIRSLLRELDV-VPKQVLI 442 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-RFSFE 257 ++ IAEV Q G + + G S + FG ++ + + Sbjct: 443 EMVIAEVSLGKGLQYGVEGLLKGFLDSSSFTIGTSFGLAPQADTLQGFKTIIFNKNNDIR 502 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTS-------GGQHLYKTVSSSTGATSVTTH 310 +L+ L T+++ L+ P + + A Q + T + V Sbjct: 503 GILNFLASKTSLKVLSAPHILVKDNEEAKIEVGAEVPILTQQIVPVTGGTLNVQNMVQYR 562 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368 GV+L PTV + + L+I EVS+ V P R A TT+ L + Sbjct: 563 TTGVILKVRPTVSADNSVTLKITQEVSDAVKNTVQPELTSPLITKRSASTTLILRNDQVG 622 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +L G++++ +Q+ K G+PLLS IP LG LF N + TE+ + ++ Sbjct: 623 LLGGIIQNRLQRQKSGVPLLSDIPGLGILFSNESVSSSNTELILLIKASVI 673 >gi|330815292|ref|YP_004358997.1| Type II/III secretion system protein [Burkholderia gladioli BSR3] gi|327367685|gb|AEA59041.1| Type II/III secretion system protein [Burkholderia gladioli BSR3] Length = 658 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 70/455 (15%), Positives = 150/455 (32%), Gaps = 89/455 (19%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 + ++IS+ L + + V + +++ L G+ G Sbjct: 162 PVVVPRAAADRRRISLDLRQAPLAAVFDAFAR-------------FTGQSVVLSGRVQGS 208 Query: 97 ANVI------------LIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 A + L+ +G + D++ A L R +++ R+ + Sbjct: 209 ATLRIHDVPWRDAFDALLDANGLAMAMRGDVIWVAPAAELTARERARF-EAHARMADLEP 267 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------- 190 ++R + + A L+ +Q ++ + + NLL + Sbjct: 268 LASRTFLLRYPRANDVARLLTGAVANQRVLSRRGSVLADARTNLLFVTDLDGRLAQIAAL 327 Query: 191 -----AGEDQVTLKVTIAEVRRDILKQIGFQH---------------------------- 217 QV ++ + E R +++G + Sbjct: 328 VAQLDRPSRQVLIEARVVEGERGFSRELGARIALRTTRSLARGEGAGSGGAPGPAQPAAG 387 Query: 218 -------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + G G AA G F + ++ + L ALE Sbjct: 388 EGAPAGSGKPPATGLVGGPEGRLADLAARPIGGFEAATAGLTLFVAGASRLLDLELSALE 447 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + ++ P + A G + Y+ G + V + L P + Sbjct: 448 SQGRGQIVSRPRVVTADRAPALIEQGTELPYQ-AKVGRGVSGVQFRRATLKLEVEPQITP 506 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + L + ++++ +G P+ + T VE+ +GGT+ + G+ + + Sbjct: 507 DGHVVLDL--DIAKDSVGEQTDAGPAIHTKHVRTRVEVENGGTVSIGGIYERNEWDDVTR 564 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+L KIP+LGALFR+ + +E+ + TP ++ Sbjct: 565 VPVLGKIPVLGALFRHKARREQSSELVVYITPRVL 599 >gi|300023665|ref|YP_003756276.1| general secretion pathway protein D [Hyphomicrobium denitrificans ATCC 51888] gi|299525486|gb|ADJ23955.1| general secretion pathway protein D [Hyphomicrobium denitrificans ATCC 51888] Length = 773 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 62/289 (21%), Positives = 117/289 (40%), Gaps = 16/289 (5%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205 G + S V ++ + + + + KK++ +L+ QV + T+AEV Sbjct: 440 EGPQSSAATSSDQVRVTPDERNNKLLIKASERNYKKILQILHRVDQPPLQVLINATLAEV 499 Query: 206 RRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + Q G Q + F+ ++ +L AL Sbjct: 500 TLNKNLQYGVQFFLQKNHGKSGGIGFSTSDALAIAPVMPGLNLIAGNIGSDPRVILDALA 559 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSSTGATSVTTHDYGVVLH 317 + TA+R ++ P++ + Q A G Q S + + GV+L+ Sbjct: 560 KETAVRIVSSPSVVVLHNQQAILEVGDQVPIITREAQSVINPDSPTVNEIEFKNTGVILN 619 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAG 372 TP + S G + + +Q EVS D P+ R+ +T+ + SG +VL G Sbjct: 620 VTPRINSNGLVTMEVQQEVSAVQNTSGQSDAATSLTPTISQRRVTSTIAVQSGQMVVLGG 679 Query: 373 LLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVK 420 L+++++ + K IP+++KIP LG L + R TE+ + P +++ Sbjct: 680 LIREEVSRSKSSIPVINKIPYLGDVLGGETDNGRTRTELVVFIRPIVIR 728 >gi|108757430|ref|YP_630733.1| general secretion pathway protein D [Myxococcus xanthus DK 1622] gi|108461310|gb|ABF86495.1| general secretion pathway protein D [Myxococcus xanthus DK 1622] Length = 863 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 58/359 (16%), Positives = 114/359 (31%), Gaps = 63/359 (17%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-TIQDSQRAVELSETFLSQSGR 173 + + + + G V+ + ++ + + Sbjct: 361 QGTGNAPRGRTPVPARPPGAPGGPTTTQAAELFSGEVKISADKGSNSLVIVASSADYKNI 420 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 +V+ L+ QV ++ I EV D ++G S S + Sbjct: 421 V--------QVIQQLD-KPRRQVFVEAVIMEVNLDRNARLGMNLHSGFSLSTSNGDQVPG 471 Query: 234 FGGKFVSE-----------------------GGDFSVKGVLDRFSFETVLHALERATAIR 270 G S G L +F VLHA+++++ + Sbjct: 472 LIGTNTSGQGLPPSLSLTSLASYGGFLAGIQGPVIPALEKLGIPAFGVVLHAMQQSSDVN 531 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------------------------- 303 L+ P + + A T G +++ + T Sbjct: 532 VLSTPHILTSDNEEAEITVGQNVPFQSGFNPTSLGSLGAGVGGGAGALGGGLLGGLGGLG 591 Query: 304 --ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 +T + + L P + I L I + E P+ R A TTV Sbjct: 592 SLYAPITRQNVELKLTVKPQINESDYIRLVINQQTEEIASTDPVLG-PTTSRRSAKTTVI 650 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ G+++D + +PLL IP+LG LFR++ + +T + + TP++++ Sbjct: 651 ARDQETLVIGGIMQDRTLESVSKVPLLGDIPLLGHLFRDTTRRKTKTNLLLFLTPYIIR 709 >gi|121603667|ref|YP_980996.1| general secretion pathway protein D [Polaromonas naphthalenivorans CJ2] gi|120592636|gb|ABM36075.1| general secretion pathway protein D [Polaromonas naphthalenivorans CJ2] Length = 738 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 102/276 (36%), Gaps = 33/276 (11%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGGK----------- 237 A QV ++ IAEV D + G Q G S +FG Sbjct: 406 ARRAQVYVESLIAEVNMDKAAEFGIQWQGPIGGKGDSLIGLLGTNFGSSGKNIIQSAIGA 465 Query: 238 ------FVSEGGDFSVKGVLDRFSFETVL-HALERATAIRTLAEPTLTAISGQSASFTSG 290 G + V + F L + L+ + A L+ P L + + A G Sbjct: 466 ASGTPLAPGTGLNLGVAARSNGVYFLGFLANFLQTSGAGNILSTPNLLTLDNEEAKIIIG 525 Query: 291 GQHLYKTVSSST-----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + T + ++ D G+ L P + G + + I EVS Sbjct: 526 QNVPFVTGQFTNTGSGGSNGSVNPFQTIERKDVGLTLRVKPQISENGTVKMAIFQEVSSV 585 Query: 340 VIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G VN+ R ++ V + G IV+ GLL+D+ +E +P L +P+ G LF Sbjct: 586 QPGSVNSVTGLITNKRSIESHVLVEDGSIIVIGGLLQDEFAGNQEKVPGLGDVPVFGNLF 645 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++ +R++T + + P +V+ A + D Y Sbjct: 646 KSESRSRKKTNLMVFLRPVVVRDGAATS-ALSMDRY 680 >gi|170699037|ref|ZP_02890094.1| general secretion pathway protein D [Burkholderia ambifaria IOP40-10] gi|170136073|gb|EDT04344.1| general secretion pathway protein D [Burkholderia ambifaria IOP40-10] Length = 770 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 103/294 (35%), Gaps = 35/294 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ I E+ +G Q + Sbjct: 370 IQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQV 428 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS-------------------------VKGVLDRF 254 + AA G + + + + + Sbjct: 429 ASGQFLGGTNLAAAAGNVAGNSIINLTTGGTAATTGIAANLANLNQGLNIGWLHNMFGVQ 488 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATS 306 +L + L+ P L + + A G + ++S + Sbjct: 489 GLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNT 548 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365 D G+ LH P + G + L++ TE S NA P++ R +T+ +G Sbjct: 549 YDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNG 608 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IVL GL++D+ Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 609 EIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 662 >gi|325521649|gb|EGD00419.1| general secretion pathway protein D [Burkholderia sp. TJI49] Length = 699 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 57/307 (18%), Positives = 102/307 (33%), Gaps = 41/307 (13%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + + V++ L+ QV ++ I E+ Q+G Q + Sbjct: 368 IQADAATNSLIITASDPVYRNLRAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQV 426 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255 + + AA G + + + V Sbjct: 427 ASGALLAGTNLAATAGSVAGNSIINLTAGTVNSSTGTLTGVGLPANLSNLNQGLNIGWLH 486 Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SS 300 +L + L+ P L + + A G T ++ Sbjct: 487 NMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTT 546 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTT 359 S + D G+ LH P + G + L++ TE S NA PS+ R +T Sbjct: 547 SNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVDTATTNAQTGPSFTKRSIQST 606 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G IVL GL++D +PLL IP +G LFR+ R++T + + P ++ Sbjct: 607 ILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII 666 Query: 420 KPVAMRD 426 Sbjct: 667 SDRDTAQ 673 >gi|312882785|ref|ZP_07742519.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC BAA-2122] gi|309369569|gb|EFP97087.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC BAA-2122] Length = 409 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 94/239 (39%), Gaps = 11/239 (4%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------FGGKFVSEG 242 QV ++ I ++ L+ +G + I + PS + Sbjct: 172 RPIKQVQIEAYIVTIQEGNLEDLGIRWGIQTQPNQPSMISQVNEAMLDVDLSMVAPSPSN 231 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F + + + L AL++ + ++ P L + + A G + Y +SS Sbjct: 232 TAFRMARLSQNILLDMELSALQKESKAEVISNPKLLTTNKRPAYIEQGSEIPYLEAASSG 291 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTV 360 A+ + L TP + S + L +Q P +N G + ++ T V Sbjct: 292 AASI-AFKKAVLSLKVTPKITSKNDLLLDLQVTQDRPGNPINTGSGQAVAIDTQRIGTQV 350 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G TIVL G+ + + + IPLL +P+LGALFR + +E+ I TP ++ Sbjct: 351 LVKDGETIVLGGIFQHSLSNAVDKIPLLGDVPLLGALFRRNYLQENRSELLIFVTPKVL 409 >gi|197335785|ref|YP_002155116.1| general secretion pathway protein D [Vibrio fischeri MJ11] gi|197317275|gb|ACH66722.1| general secretion pathway protein D [Vibrio fischeri MJ11] Length = 548 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 103/285 (36%), Gaps = 30/285 (10%) Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + + K+ + + + QV L+ + EV Q G S +S Sbjct: 241 QASVVTITASPDELRKVKQFLGTSHKRLQRQVILEAKLLEVTLSDGYQQGINWSNLTASL 300 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVL---------DRFSFETVLHALERATAIRTLAEP 275 G + G G L +F+ VL ++ + L+ P Sbjct: 301 GGTDVVFGQTPGLVQGALPGMDTIGTLLGGQTNITVSDGNFQAVLSFMDTQGDLNVLSSP 360 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSP 325 +TA + Q A G Y T SS + ++T G+ L TP + Sbjct: 361 RVTAANNQKAVIKVGRDEYYVTEVSSVTGSGDNSNASPEVTLTPFFSGISLDVTPQIDDK 420 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSY-----------RVRKADTTVELPSGGTIVLAGLL 374 G + L + V + V D+ +R++D+ + SG +V+ GL+ Sbjct: 421 GNVMLHVHPSVIDVENEVKEIDLGDVGGVLKLPLAKSSIRESDSVIRAKSGDVVVIGGLM 480 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 K +PLL +P LG LFRN ++TE+ I P +V Sbjct: 481 KSQTVDQVSKVPLLGDVPALGHLFRNVSQLTQKTELVILLKPTVV 525 >gi|212633381|ref|YP_002309906.1| type II and III secretion system protein:secretin [Shewanella piezotolerans WP3] gi|212554865|gb|ACJ27319.1| Type II and III secretion system protein:Secretin [Shewanella piezotolerans WP3] Length = 558 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 57/249 (22%), Positives = 95/249 (38%), Gaps = 23/249 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252 QV L+ + EV Q G +G + +S+ + GV Sbjct: 286 RQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDITFGTSPTTGLSDQITSVLGGVTSI 345 Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------- 300 F T++ L+ + L+ P +TA + Q A G + T S Sbjct: 346 QLKGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTP 405 Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------- 352 +T +T G+ L TP + + G + L I V + + Sbjct: 406 VTTPEVELTPFFSGIALDVTPQIDAEGNVLLHIHPSVIDIKEQTKTIKISDSTLELPLAQ 465 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT ++ SG +V+ GL+K + +L +PLL IP LG F N + +TE+ Sbjct: 466 SEIRESDTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPYLGEAFTNRANSTVKTEL 525 Query: 411 FIAATPFLV 419 I P +V Sbjct: 526 VILLKPVVV 534 >gi|59710966|ref|YP_203742.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114] gi|59479067|gb|AAW84854.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114] Length = 546 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 103/285 (36%), Gaps = 30/285 (10%) Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + + K+ + + + QV L+ + EV Q G S +S Sbjct: 239 QASVVTITASPDELRKVKQFLGTSHKRLQRQVILEAKLLEVTLSDGYQQGINWSNLTASL 298 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVL---------DRFSFETVLHALERATAIRTLAEP 275 G + G G L +F+ VL ++ + L+ P Sbjct: 299 GGTDVVFGQTSGLVQGALPGMDTIGTLLGGQTNITVSDGNFQAVLSFMDTQGDLNVLSSP 358 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSP 325 +TA + Q A G Y T SS + ++T G+ L TP + Sbjct: 359 RVTAANNQKAVIKVGRDEYYVTEVSSVTGSGDNSNASPEVTLTPFFSGISLDVTPQIDDK 418 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSY-----------RVRKADTTVELPSGGTIVLAGLL 374 G + L + V + V D+ +R++D+ + SG +V+ GL+ Sbjct: 419 GNVMLHVHPSVIDVENEVKEIDLGDVGGVLKLPLAKSSIRESDSVIRAKSGDVVVIGGLM 478 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 K +PLL +P LG LFRN ++TE+ I P +V Sbjct: 479 KSQTVDQVSKVPLLGDVPALGHLFRNVSQLTQKTELVILLKPTVV 523 >gi|223935099|ref|ZP_03627017.1| type II and III secretion system protein [bacterium Ellin514] gi|223895983|gb|EEF62426.1| type II and III secretion system protein [bacterium Ellin514] Length = 612 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 65/370 (17%), Positives = 124/370 (33%), Gaps = 54/370 (14%) Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRT 153 G N+ ++ ++ + + L + I+++ + +VL+ Sbjct: 197 GNYNLTIVDDPRTKIARITVKDPAAPEPLVTRV--------IQLKYANVTNIVLNVTGVL 248 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 R T ++ +++ L+ QV ++ + E ++ Sbjct: 249 QDKRSRVAADVRTSQLVVLATDRELTAVDELVAKLD-TATKQVLIEARLVETSKNPTTAK 307 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFV---------------------------------- 239 G + T ++ + F Sbjct: 308 GVDWTGTAAAQNVRFGNNSILAAPFTRGTPPTPANPFGTPDQQAVPSTILDPTQPMIAAN 367 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G L+ VL L + L+ P + ++A+ + + Sbjct: 368 THNGFLPNTFFLNADGASAVLSFLNTDNDAQVLSTPRAVTLDNETATLSVTRAQPIFKTT 427 Query: 300 SST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV------NAGDMP 349 + T G + VT + G +L TP + + I LR+ EVS + Sbjct: 428 AGTQGSPGGSEVTYTNVGTILKVTPRISANKMISLRVIPEVSSVAGTDRKIVSGQINEAD 487 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + VR DT V +PSG T+V+ GL+ DD + +PLL IP LGA FR+ + + Sbjct: 488 IFDVRHIDTQVLIPSGNTLVMGGLVSDDRTKSYIKVPLLGDIPYLGAAFRHESKTQNKKN 547 Query: 410 IFIAATPFLV 419 + I TP +V Sbjct: 548 LIIFVTPTIV 557 >gi|221133689|ref|ZP_03559994.1| type IV pilus secretin PilQ [Glaciecola sp. HTCC2999] Length = 473 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 79/421 (18%), Positives = 146/421 (34%), Gaps = 60/421 (14%) Query: 51 SIGLNKVIILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 S+ K I L V V+ VL D + + T+ G + L Q Sbjct: 59 SVYTGKPISLDFKDVPVRQVLQIIAQLNDYNLVTTDTV------TGNVTINLQDVPWDQA 112 Query: 110 LNLDILIERDIAHLEMTL------RRFIADSNIRVEMVSDTVVLHGMVR-----TIQDSQ 158 L + I +E + +A N ++ T L +V ++ Sbjct: 113 LATILNIRGLDQRIEGNIIIIAPHDELLARENALIQSQQQTQDLAPLVSRNHRVNYAKAE 172 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------------------QVTLKV 200 + ++ ++ N+ A + ++ N + + QV ++ Sbjct: 173 QIAQIIQSTNGGILSNRGAVAVDER-TNTILLRDTQTSIDTAIQMIKELDIPVRQVLIES 231 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--------------------VS 240 + VR +I QIG + ITG + S +A + Sbjct: 232 RMITVRDNIDDQIGIRWGITGQKGHLAVSGSAAAANDIKAGIIPDISDRLNVNLPIVNSA 291 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + ++D + L ALE +A P +T + Q A G + Y + Sbjct: 292 GRLGVQIASLMDGTILDLELSALETENKGEIIASPRITVANQQEAYIEQGTEIPYVQS-T 350 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADT 358 + G+TSV + L P + RI L + V+ P+ ++ T Sbjct: 351 ANGSTSVAFKKAVLSLKVIPQITPDDRIILDLVITQDTRGETVSTATGPAVAIDTQEIKT 410 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + +G TIVL G+ + +P+L +P++G LF+N ++ E+ I TP + Sbjct: 411 QVLVENGETIVLGGIFQKISTNDIAKVPILGNVPLVGGLFKNKVSIEQKRELLIFVTPKI 470 Query: 419 V 419 + Sbjct: 471 I 471 >gi|84622715|ref|YP_450087.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366655|dbj|BAE67813.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 649 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 47/281 (16%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223 DQV ++ I + +G + I G++ Sbjct: 367 RPVDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNTSAKRASEIA 426 Query: 224 ------------SGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIR 270 + GG F + G + + F+ + L A+++ Sbjct: 427 NGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELSAMQQEGRGE 486 Query: 271 TLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 ++ P + + + G + + + + +V + + L TPT+ + Sbjct: 487 VVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELKVTPTITNDN 546 Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 R+ L + + E ++ G +P R+ +T V + G T+V+ G+ + ++ Sbjct: 547 RVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVYEFTDRESVS 606 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 +P L IP LG LF+ ++E+ E+ + TP +++ + Sbjct: 607 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 647 >gi|50086334|ref|YP_047844.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1] gi|12642803|gb|AAK00351.1|AF329876_7 putative outer membrane protein ComQ [Acinetobacter sp. BD413] gi|49532310|emb|CAG70022.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1] Length = 723 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 112/318 (35%), Gaps = 38/318 (11%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 + + VE + D+V G + + + + + T + + K+++LL+I Sbjct: 405 NGSATVEPLGDSV---GTLLSPRGTISLDPRTNTLIINDTSQKIDQIR--KMIDLLDIPV 459 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------- 233 + QV ++ I K++G + I + + Sbjct: 460 K-QVMIEARIVRATTSFSKEMGVKWGILSQGINQNSNLLVGGSETTLWNLRNPDSNGTYT 518 Query: 234 ----------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G L F + L AL+ ++ P + + Q Sbjct: 519 IERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDLELSALQADGYGEVISTPKVMSADKQ 578 Query: 284 SASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A +G + Y++ ++S + + + + L TP + G+I + + ++ + Sbjct: 579 KAKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIA-NDSIN 637 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +T V + +G T+VL G+ + +P L +P +G LF+ + Sbjct: 638 SYAQNGEAILNKNTINTNVLVNNGETVVLGGVFEQTTNNAVTKVPFLGDLPYVGRLFKKT 697 Query: 402 RFNREETEIFIAATPFLV 419 + + E+ I TP +V Sbjct: 698 AKSEAKNELLIFVTPRIV 715 >gi|78046312|ref|YP_362487.1| type II secretory pathway protein D [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034742|emb|CAJ22387.1| type II secretory pathway protein D [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 689 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 80/441 (18%), Positives = 155/441 (35%), Gaps = 49/441 (11%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 DP VV + + + G +V+ L +Q+L + + E + Sbjct: 231 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQD 290 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + + V S + V + + + V+ L++ Sbjct: 291 TRSTAMDVAAASGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 350 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246 +QV ++ + E+ K++G Q + G + ++ A G ++ + Sbjct: 351 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGT 409 Query: 247 VKGVLDRFS-------------------------------FETVLHALERATAIRTLAEP 275 G D S F ++ A++ T L+ P Sbjct: 410 RSGNADDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 469 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ + + A G + T + ++ D GV L P + + G I L Sbjct: 470 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 529 Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I+ EVS V+A + R+ +T V + +G + L GLL + +Q E +PLL Sbjct: 530 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 589 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVE-----DDAKAF 443 +P LGALFR+ NR++T + + P +++ + ++ P +Y E D +A Sbjct: 590 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNYLRERQLADGDPEAA 649 Query: 444 FFNRVNKIYGPKEASEVEGQN 464 V + G + Sbjct: 650 LDALVRDYLRAQPPQLPAGPS 670 >gi|188578246|ref|YP_001915175.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522698|gb|ACD60643.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 655 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 47/281 (16%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223 DQV ++ I + +G + I G++ Sbjct: 373 RPVDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNTSAKRASEIA 432 Query: 224 ------------SGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIR 270 + GG F + G + + F+ + L A+++ Sbjct: 433 NGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELSAMQQEGRGE 492 Query: 271 TLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 ++ P + + + G + + + + +V + + L TPT+ + Sbjct: 493 VVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELKVTPTITNDN 552 Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 R+ L + + E ++ G +P R+ +T V + G T+V+ G+ + ++ Sbjct: 553 RVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVYEFTDRESVS 612 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 +P L IP LG LF+ ++E+ E+ + TP +++ + Sbjct: 613 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 653 >gi|149923951|ref|ZP_01912337.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1] gi|149815183|gb|EDM74732.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1] Length = 1125 Score = 160 bits (404), Expect = 6e-37, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 95/279 (34%), Gaps = 43/279 (15%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------ 234 ++ ++ L+ QV ++ I E R + L+Q+G Q +S + + Sbjct: 842 AESLVRQLDSQTP-QVLIEARIVEARTNWLRQLGIQWGFDFVASPGTGNPTGLLFPNAIG 900 Query: 235 ---------------------------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261 G FS + + L Sbjct: 901 IGGGSGSNQSPVNGLILPGAAANPNYAVDLPAVVGTGSGGALGFSFGSLSGNLNTNLRLS 960 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 A E +R ++ P + + A G Q VS+ T + + L TP Sbjct: 961 AAENEGDVRIISAPKIVTLDNTEAQIEQGVQIPIAQVSAQGVNTR--YVNATLGLRVTPQ 1018 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 V + G + L ++ + +E P+ + A + + + G T V+ G+ + Sbjct: 1019 VTNEGAVLLEVEVQKNEADFVNTGARGDPTILTKSARSQLLITDGDTAVIGGIYTRNQAI 1078 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P + IPI+G F+N + +E+ I TP +V Sbjct: 1079 NHSKVPWFADIPIIGWFFKNRTERDDRSEMLIFLTPRIV 1117 >gi|188026465|ref|ZP_02962178.2| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827] gi|188019786|gb|EDU57826.1| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827] Length = 348 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 109/240 (45%), Gaps = 9/240 (3%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + L++ + QV + I R L+++G + + S S+ + ++ S Sbjct: 114 EEWLKQLDVP-KQQVQITAHIISSSRTALQELGLEWGMLSGSPNNSRYQRYN---RYDSS 169 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G F++ + + + +ALE+ + +A P L A AS G + V+S+ Sbjct: 170 SGQFNLLRLGEGLLELKL-NALEKENLLSIIASPRLMASHKHPASIQQGSEIP--YVTST 226 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTT 359 T V D + + TPT+ + L ++ + P + D + ++ T+ Sbjct: 227 EKKTHVQFKDAVLGMEVTPTLSRGDHVELLLKISHNSPDKAITTSDEHYLAINKQEIATS 286 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + + T++L G+ + ++ + G+P LS IP+LG LF N+ + + + + TP L+ Sbjct: 287 VTIRNNETLILGGIFQQKQEKTETGLPFLSNIPLLGKLFTNTGEHIDRRVLVVFITPKLI 346 >gi|83859119|ref|ZP_00952640.1| general secretion pathway protein D [Oceanicaulis alexandrii HTCC2633] gi|83852566|gb|EAP90419.1| general secretion pathway protein D [Oceanicaulis alexandrii HTCC2633] Length = 661 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 62/289 (21%), Positives = 110/289 (38%), Gaps = 48/289 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---- 237 ++V++ L++ QV ++ + E+ + +G Q + G + +G Sbjct: 321 EQVISRLDVRRP-QVQVEAIVVEISDQTARDLGVQFLLAGDGDDATPFAYTRYGSTRQPD 379 Query: 238 -----------FVSEGGDFSVKGV--------------------------LDRFSFETVL 260 +S G + D F ++ Sbjct: 380 LLALTGALLTGGLSSGDGETTSSTDVNLRNLALSSLVNSRGGSFGFGGELNDGSLFGVIV 439 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVV 315 +AL+ T L++P L + + A+ G + T ++S + GV Sbjct: 440 NALDSDTDSNVLSKPQLMVLDNEEANLMVGQEIPITTGETLGSNNSNPFRQIERESVGVQ 499 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLL 374 L+ P + I L+I+ EVS V+A + RK +TTV G IVL GL+ Sbjct: 500 LYVRPQINDGDAIRLQIRQEVSSVAGPVSADFVELITNQRKIETTVLADDGEIIVLGGLI 559 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + D Q+ + G+P LS+IP G LFRN + + + P +V+ A Sbjct: 560 ETDEQEAESGVPGLSRIPGAGRLFRNDSRSTTRRNLMVFIRPTIVRDAA 608 >gi|190572747|ref|YP_001970592.1| putative general secretion pathway protein D [Stenotrophomonas maltophilia K279a] gi|190010669|emb|CAQ44278.1| putative general secretion pathway protein D precursor [Stenotrophomonas maltophilia K279a] Length = 733 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 111/276 (40%), Gaps = 25/276 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----------A 231 +V+ L++ QV ++ +AEV D + G + +G + + Sbjct: 446 EVIEKLDV-MPLQVHIEAQVAEVSLDGDLKYGVNWFFDNAVAGRALTGALGGVTLPAAAG 504 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + + G + + V+ AL++ T +R L P++ + A+ G Sbjct: 505 GSWSSFAGAATGGEGLGWAFTGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGD 564 Query: 292 QHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----- 341 + T + +TG +SV D GV+L P V G + L I EVS Sbjct: 565 KVPINTTTVNTGIGTGTYSSVQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASNVPDNC 624 Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 P +K T + SG TI+LAGL+ D GIP LS+IP++GALF Sbjct: 625 NPTERNCNPRISTKKLSTEAAVQSGDTIMLAGLITDSATDGSSGIPGLSRIPVVGALFGQ 684 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 +E+ + TP +V+ ++ D YS Sbjct: 685 KSRTSRRSEVIVLLTPSIVR--NGQEARNLTDEYSQ 718 >gi|220936186|ref|YP_002515085.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7] gi|219997496|gb|ACL74098.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7] Length = 711 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 103/264 (39%), Gaps = 26/264 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240 ++++ L+I QV ++ I D + +G + +TG + Sbjct: 448 RLIDRLDIP-VQQVLIETRIVIASDDFARDLGARFGVTGVGQTGRTQTFTTGNLSGTTEM 506 Query: 241 ---------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G ++ + + + AL+ ++ P + Sbjct: 507 IRGDELSLLNRLNTNLPVISPSAGSIALSILRPDVLLDLEISALQVEGRGEIISSPRVIT 566 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 +GQ+A G + Y+ +SS GAT+V + + TP + G I L I+ P Sbjct: 567 ANGQTARIQQGERIPYQEATSS-GATAVQFIEAVLATEVTPQITPNGNIILNIRVNKDNP 625 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + PS R+ +T V + +G T+VL G+ + D + E +P +P + LFR Sbjct: 626 -GTLVVQGTPSIETREVETQVFVRNGETVVLGGVYEIDSLETLEKVPFFGDLPGIRHLFR 684 Query: 400 NSRFNREETEIFIAATPFLVKPVA 423 + + + E+ I TP +++ A Sbjct: 685 RTGKSTRKAELLIFVTPKVIEETA 708 >gi|319944026|ref|ZP_08018306.1| type II and III secretion system protein [Lautropia mirabilis ATCC 51599] gi|319742787|gb|EFV95194.1| type II and III secretion system protein [Lautropia mirabilis ATCC 51599] Length = 837 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 95/271 (35%), Gaps = 30/271 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 V++ L+ QV ++ I EV+ D + ++G Q S G + S Sbjct: 408 GVIDQLDSR-RAQVYIESLIVEVKADTVSEMGIQWQFGTSRPGQNSVVGGTNFSSGGSNI 466 Query: 243 G---------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + + ALE T A P L + Sbjct: 467 LSVTQNPAALAAAGGLNVGVVRNGVSLFGQTFLNLGLLARALEAETNSNIRATPNLLTLD 526 Query: 282 GQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + A G + T +T ++ D G +L P V G + + I Sbjct: 527 NEEARIIIGQNVPFVTGQYATTNNTLSSPFQTIERKDVGTMLRVRPQVSEGGTVKMEIAQ 586 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 E+S V + + R D+ V + G +VL GL++D ++ +PLL IP L Sbjct: 587 EISAVVDTTQSAGI-ITNRRAIDSNVLVDDGQIVVLGGLIEDTVEGGISKVPLLGDIPGL 645 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR 425 G LFR R +T + I P +++ Sbjct: 646 GRLFRYDNRKRVKTNLLIFLRPVVLRSADQA 676 >gi|307720197|ref|YP_003891337.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] gi|306978290|gb|ADN08325.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] Length = 709 Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 109/239 (45%), Gaps = 18/239 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q ++VT+A+V +GF+++IT ++G K+ GG + V Sbjct: 454 PLQTLVEVTVADVDMTDTFSLGFEYAITNQNAGLVKNILNITGG-------GSGLGVVFK 506 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------T 302 E+ ++A + +++P L ++ ++ + G Q T S + Sbjct: 507 GNHLESTINAYAEKKLLDIISKPKLLILNNKTGNINVGTQVPIITSQVSAADLGSSSQPS 566 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVE 361 +++ + G++L+ TPT+ S G + + I +S+ + + P R TT Sbjct: 567 INQNISYKNTGIILNITPTINSNGVLTMNISITLSDAQLNDTSTINSPLIINRSLQTTAV 626 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + SG +I+L GL+ + + K G+PLL IP +G +F ++ ++E+ I P ++K Sbjct: 627 VQSGDSILLGGLISQNKSKSKGGVPLLKDIPWIGNMFASNSIKTTKSELIILIRPVIIK 685 >gi|212709415|ref|ZP_03317543.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM 30120] gi|212687930|gb|EEB47458.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM 30120] Length = 344 Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 6/228 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + I R L+ +G + + S + + + G L Sbjct: 119 QQVQITAHIISSSRTALQALGLEWGVHNDS--ATDGHHSRYNRYSSQSGQMALNVLRLGE 176 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 E L+ALE+ + +A P L A AS G + V++S + V D Sbjct: 177 GLLEMKLNALEKENLLSIIASPRLVASHKNPASIQQGSEIP--YVTTSEKKSHVQFKDAV 234 Query: 314 VVLHFTPTVLSPGRIGL--RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + + TPT+ + + +I + + N + ++ T+V + + T++L Sbjct: 235 LGMEVTPTISRNDNVEMVLKISHNSPDTALTTNPNQHLAINKQEIATSVTIKNNNTLILG 294 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ + ++ G+P LS+IP+LG LF N + ++ + + TP L+ Sbjct: 295 GIFQQKQEKTDSGVPFLSQIPLLGNLFINKTQHVDKRVLVVFITPKLI 342 >gi|254246658|ref|ZP_04939979.1| GspD [Burkholderia cenocepacia PC184] gi|124871434|gb|EAY63150.1| GspD [Burkholderia cenocepacia PC184] Length = 775 Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 95/275 (34%), Gaps = 39/275 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 V++ L+ QV ++ I E+ +G Q + + G Sbjct: 399 SVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSIIN 457 Query: 236 ---------------GKFVSEGGDFSVKGVLDRF-------SFETVLHALERATAIRTLA 273 G S G S + +L + L+ Sbjct: 458 LTAGGVANAAGGITGGGLASNLGQLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLS 517 Query: 274 EPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 P L + + A G + ++S + D G+ LH P + Sbjct: 518 TPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDG 577 Query: 326 GRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + L++ TE S NA P++ R +T+ +G IVL GL++D+ Q Sbjct: 578 GILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSK 637 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP +G LFR+ R +T + + P ++ Sbjct: 638 VPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII 672 >gi|94496443|ref|ZP_01303020.1| type II and III secretion system protein [Sphingomonas sp. SKA58] gi|94424189|gb|EAT09213.1| type II and III secretion system protein [Sphingomonas sp. SKA58] Length = 726 Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 58/293 (19%), Positives = 107/293 (36%), Gaps = 57/293 (19%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247 +QV ++ I E+ K++G Q I + +G + + ++ ++ G + Sbjct: 351 TRREQVLVEAIIVEISDAAAKKLGVQFLIGSTKTGFAATNYSNASPNLLTLAGAYGANQL 410 Query: 248 ------------------------------------------------KGVLDRFSFETV 259 + F + Sbjct: 411 GTTTTTVVAPDGTRTTTEVRENSDLASTLQQAAINSLQSATGAIAGLGGSIGSNGIFGAI 470 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGV 314 ++A++ T L+ P++ + Q AS G Q T + +V D G+ Sbjct: 471 INAVKSDTESNLLSTPSVMTLDNQKASILVGQQVPVTTGEALSQNFDNQFRTVQRQDVGI 530 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 L P + + G I L ++ EVS V N R+ +TTV + G + L GL Sbjct: 531 KLEVKPQINTGGAIKLFLRQEVSSVAGPVSNDNSDLIINKREIETTVTVDDGEILALGGL 590 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L D+ ++ E IPLLS IP +G LF++ +R +T + + P +++ Sbjct: 591 LDDNERKTIERIPLLSDIPGIGELFKSRSRSRTKTNLMVFIRPTILRSKEDAQ 643 >gi|289668624|ref|ZP_06489699.1| general secretion pathway protein D [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 760 Score = 159 bits (403), Expect = 8e-37, Method: Composition-based stats. Identities = 72/304 (23%), Positives = 117/304 (38%), Gaps = 32/304 (10%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ET A SS + V+ L++ QV ++ IAEV G Sbjct: 443 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQIAEVNLTGELSYGVNWYF 501 Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268 + + P + + + G V + V++AL+R T Sbjct: 502 ENAVTTPFNADGSGGPALPSAAGRNIWGDIAGSVTGNGVGWTFLGKNAAAVINALDRVTN 561 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322 +R L P++ + A+ G + + S +TG +SV D GV+L P V Sbjct: 562 VRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRV 621 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370 G + L I EVS P A + R+ T + SG T++L Sbjct: 622 TKDGMVFLDIVQEVSTPGARPAACTAATTTTVNSAACNVDINTRRVKTEAAVQSGDTMML 681 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGL+ D G+P LSK+P++GALF + E+ + TP +V+ ++ Sbjct: 682 AGLIDDSTSDGSAGVPFLSKLPVVGALFGQKTRDNTRREVIVLITPSIVR--NPQEARNL 739 Query: 431 DDHY 434 D Y Sbjct: 740 TDEY 743 >gi|238751132|ref|ZP_04612627.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380] gi|238710610|gb|EEQ02833.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380] Length = 376 Score = 159 bits (403), Expect = 8e-37, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 117/291 (40%), Gaps = 10/291 (3%) Query: 137 RVEMVSDTVVL-HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 E V+D++ L G V + S + + T L + A S V L + Q Sbjct: 90 DAEQVADSLDLAEGGVLSPLGSVVVDKRTNTLLIRDTPASLALLQSWLVEMDLPL---QQ 146 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLD 252 V L I + R+ L+++G + + + S F + F+V + Sbjct: 147 VQLAAHIVTISRENLQELGVRWGMGEAKQNSSLRMNDFNVNLPLPNRVISAGFNVARIGG 206 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 R + ALE+ I +A P L A Q+AS G Y G ++V + Sbjct: 207 RLLELEL-SALEQENQIDIIASPHLVASHQQTASIKQGSDIPYTVSKGKKGISTVEFKEA 265 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVL 370 + + TP +L G+I L ++ + P + + + ++ T + + G TIVL Sbjct: 266 VLGMEVTPKILRNGKITLDLKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETIVL 325 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G+ + Q +P+L+ IP LG LF+ + E+ I TP L+ Sbjct: 326 GGIFQQKSTQGVHKVPVLADIPWLGVLFKQDAQQQSRRELVIFITPKLINA 376 >gi|87309468|ref|ZP_01091603.1| Type IV pilin multimeric outer membrane protein [Blastopirellula marina DSM 3645] gi|87287776|gb|EAQ79675.1| Type IV pilin multimeric outer membrane protein [Blastopirellula marina DSM 3645] Length = 719 Score = 159 bits (403), Expect = 8e-37, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 7/245 (2%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ TI V+ D +G + + D +K Sbjct: 337 RRPLQVAIEATILSVKLDDSLNLGVNFEALIDKNKVRLVSGFPLSALDQIKLTDGGLKFG 396 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVT 308 S + ALE +A P L ++ Q A G Q ++ TV+ + SV Sbjct: 397 FLDSSLGVFIDALESFGDTSVIASPQLLVLNKQRAEILIGEQKGYISTTVTETASTQSVE 456 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGT 367 + G L P + G + L + E+S+ + V +P+ V + T V P G T Sbjct: 457 FLEIGTQLRLRPFITDDGMVRLEVHPEISDGDVKVEGQFTLPNKIVTQVTTNVICPDGRT 516 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----PVA 423 I++ GL+K D+++ IP L IPILG FR + E+ + TP +V P Sbjct: 517 IIIGGLIKSDLRKKGSQIPYLGSIPILGPAFRQKQETTVRDELIVLLTPRIVDAAHIPSD 576 Query: 424 MRDLS 428 +L Sbjct: 577 GEELR 581 >gi|269964603|ref|ZP_06178842.1| General secretion pathway protein D [Vibrio alginolyticus 40B] gi|269830730|gb|EEZ84950.1| General secretion pathway protein D [Vibrio alginolyticus 40B] Length = 286 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 90/208 (43%), Gaps = 6/208 (2%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + G + + + D+ + G + + ++ A+ + L+ P++ Sbjct: 18 NSNGERTPYDVTESGDYSTLASALSGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSI 77 Query: 278 TAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 T + ASF G + T ++ +V + G+ L P + + L I Sbjct: 78 TVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNI 137 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EVS + A D+ + R+ +T+V + G +VL GL+ + + + +PLL IP Sbjct: 138 EQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIP 196 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420 +LG LF+++ E+ + + P +++ Sbjct: 197 VLGHLFKSTSTQTEKRNLMVFIKPTIIR 224 >gi|261344685|ref|ZP_05972329.1| protein transport protein HofQ [Providencia rustigianii DSM 4541] gi|282567605|gb|EFB73140.1| protein transport protein HofQ [Providencia rustigianii DSM 4541] Length = 346 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 97/228 (42%), Gaps = 6/228 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + I R L+ +G + + G + + + G L Sbjct: 121 QQVQITAHIVSSTRTALQALGLEWGMLGEM--ATNPHHSRYNRYNTEPGKVALNILKLGD 178 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 E L ALE+A + +A P L A + AS G + V+++ + V D Sbjct: 179 GLLEMKLSALEKANLLSIIASPRLVASHQKPASIQQGTEIP--YVTNTDKKSHVQFKDAV 236 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371 + + TPT+ ++ + ++ + P + S ++ T+V + + T++L Sbjct: 237 LGMEVTPTISRDNKVEMVLKISHNSPDTAITTSQNHHLSINKQEIATSVTIKNNDTLILG 296 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ + ++ + GIP LS++P+LG LF NS + + + + TP L+ Sbjct: 297 GIFQQKQEKTEAGIPFLSQLPLLGNLFTNSFQHIDRRVLIVFITPKLI 344 >gi|71066434|ref|YP_265161.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4] gi|71039419|gb|AAZ19727.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4] Length = 756 Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 8/240 (3%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFV 239 K++ ++I QV ++ I K++G + I S + Sbjct: 514 KLIGKIDIPVR-QVMIEARIVSASDSFSKELGVRWGILFDGKPDDNRLTSSGLNVDLGIS 572 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + + + L A++ ++ P + Q+A +SG Q Y+ Sbjct: 573 NPASVAFGILKVSDVMLDLELLAMQADNRGEVISTPKILTSDKQTAKISSGTQIPYQEA- 631 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 S++GAT+ + + + L TP + G+IGL++ P I N + T Sbjct: 632 SASGATTTSFKEAALSLEATPNITPDGKIGLQLLITNGTPTIINNQV---AIAEDSISTN 688 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + G TIVL G+ K+ + +P L +P +G FR + + E+ I TP L+ Sbjct: 689 VIVEDGQTIVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLI 748 >gi|254517138|ref|ZP_05129196.1| general secretion pathway protein D [gamma proteobacterium NOR5-3] gi|219674643|gb|EED31011.1| general secretion pathway protein D [gamma proteobacterium NOR5-3] Length = 770 Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 6/275 (2%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G R V E + K+ + L++ QV ++ +I EV+ Sbjct: 459 SGTGTNELVDVRVVADEENNALMVYADGKQYGIVKEALKQLDVVAT-QVIIEASIMEVQL 517 Query: 208 DILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + G + + S G + FS VL+AL Sbjct: 518 IDELRYGLEWTFKNGLGSNYDGLGTLAAGAAGPAAVAGFSYTVSNSVGDISAVLNALSEE 577 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTV 322 + I ++ P++ + A + G Q + ++T D GV L P+V Sbjct: 578 SLINVISTPSVMVLDNHVAFISVGDQVPVLQGQTITNGGNSVQNITYRDTGVQLSVRPSV 637 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + G + + I+ V + +A ++ R ++ V + S ++VL GL++++ Sbjct: 638 NAGGLVTMDIEQSVIDVGAIDSATGQRAFLDRTINSRVAVRSSESVVLGGLIRENSSLGD 697 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 G+P+L +IP+ G+LF + + TE+ + TP Sbjct: 698 SGVPILREIPLFGSLFGTTTTDSRRTELLVIITPR 732 >gi|294667368|ref|ZP_06732586.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602809|gb|EFF46242.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 648 Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 102/276 (36%), Gaps = 46/276 (16%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------------------------- 222 DQV ++ I + +G + ITG+ Sbjct: 367 RPVDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNTAAQRANEIA 426 Query: 223 SSGPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 ++G S + A+ G S + + F+ + L A++ Sbjct: 427 NTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSAMQEEGRGEV 486 Query: 272 LAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P + + + G + + + +V + + L TPT+ + R Sbjct: 487 VSNPRIVTANQREGVIKQGREIGYVTISGGGTGGQSQANVQFKEVLLELKVTPTITNDNR 546 Query: 328 IGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L + + E +N G +P R+ +T V + G T+V+ G+ + + ++ Sbjct: 547 VFLNMNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFNDRESVAK 606 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 607 VPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642 >gi|170731436|ref|YP_001763383.1| general secretion pathway protein D [Burkholderia cenocepacia MC0-3] gi|169814678|gb|ACA89261.1| general secretion pathway protein D [Burkholderia cenocepacia MC0-3] Length = 780 Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 95/275 (34%), Gaps = 39/275 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 V++ L+ QV ++ I E+ +G Q + + G Sbjct: 399 SVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSIIN 457 Query: 236 ---------------GKFVSEGGDFSVKGVLDRF-------SFETVLHALERATAIRTLA 273 G S G S + +L + L+ Sbjct: 458 LTAGGVANAAGGITGGGLASNLGQLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLS 517 Query: 274 EPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 P L + + A G + ++S + D G+ LH P + Sbjct: 518 TPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDG 577 Query: 326 GRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + L++ TE S NA P++ R +T+ +G IVL GL++D+ Q Sbjct: 578 GILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSK 637 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP +G LFR+ R +T + + P ++ Sbjct: 638 VPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII 672 >gi|94269217|ref|ZP_01291402.1| type II and III secretion system protein:Secretin/TonB, short-like [delta proteobacterium MLMS-1] gi|93451297|gb|EAT02179.1| type II and III secretion system protein:Secretin/TonB, short-like [delta proteobacterium MLMS-1] Length = 557 Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 126/325 (38%), Gaps = 51/325 (15%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTI 202 ++ G R +D +A ++ S + ++V ++ L QV L+ I Sbjct: 206 MIVGTDRGREDGSQARQVIVNSKSGLVMVRALPGELREVETFLDALLENALRQVMLEAKI 265 Query: 203 AEVRRDILKQIGFQHSITGSS-----------------------SGPSKSFAADF----- 234 EV D Q G +S +G + + +AD Sbjct: 266 IEVELDEAFQSGINWGKLATSGRDTLKLGQIGGGTVLDDGVSAIAGNTGNLSADNYNPID 325 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G + GG F++ LD SF + L+ + L+ P + + Q A G Sbjct: 326 GTTTSAFGGVFTLATSLDHSSFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEY 385 Query: 295 YKTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 + T S + T +T G+ L TPT+ + L I+ VS+ Sbjct: 386 FVTDVSFSTRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQT 445 Query: 344 NAGDMPSYRV---------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + + R++D+ V SG I++ GL++D ++ + G+P L +P++ Sbjct: 446 KSFTVAGQTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLV 505 Query: 395 GALFRNSRFNREETEIFIAATPFLV 419 G LFR R+++ +TE+ I P +V Sbjct: 506 GNLFRQQRWSQRKTELVILLRPVVV 530 >gi|46199319|ref|YP_004986.1| competence protein pilQ [Thermus thermophilus HB27] gi|17226359|gb|AAL37751.1|AF436067_5 putative secretin PilQ [Thermus thermophilus HB27] gi|46196944|gb|AAS81359.1| competence protein pilQ [Thermus thermophilus HB27] Length = 757 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 10/234 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L+V I EV+ ++ + +G + + + + + F S L Sbjct: 532 PQVNLRVRIQEVQSNLTRSLGLKWNSIAGGNVAASILDSGLSLIFDS-------TRSLAA 584 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + L AL++ R L + T ++ Q+A SG + V + D G Sbjct: 585 LNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVNDQVERV--PFDVG 642 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAG 372 +++ TP + + G+I L I+ EVS V GD+ + + TT+ + G T+VL G Sbjct: 643 LIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGG 702 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L + Q ++G+PLL IP++G LF+ + E+ + T ++K A + Sbjct: 703 LTSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKEAASAN 756 >gi|294627095|ref|ZP_06705683.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598528|gb|EFF42677.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 649 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 47/282 (16%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------------------------- 222 DQV ++ I + +G + ITG+ Sbjct: 367 RPVDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNTSAQRANEIA 426 Query: 223 SSGPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 ++G S + A+ G S + + F+ + L A++ Sbjct: 427 NTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSAMQEEGRGEV 486 Query: 272 LAEPTLTAISGQSASFTSGGQH-----LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 ++ P + + + G + + S +V + + L TPT+ + Sbjct: 487 VSNPRIVTANQREGVIKQGREIGYVTISGGGAAGSAAQANVQFKEVLLELKVTPTITNDN 546 Query: 327 RIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 R+ L + EV+ +I G +P R+ +T V + G T+V+ G+ + ++ Sbjct: 547 RVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESVS 606 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +P L IP LG LF+ ++E+ E+ + TP +++ + Sbjct: 607 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASAN 648 >gi|325924171|ref|ZP_08185732.1| General secretion pathway protein D [Xanthomonas gardneri ATCC 19865] gi|325545346|gb|EGD16639.1| General secretion pathway protein D [Xanthomonas gardneri ATCC 19865] Length = 758 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 74/299 (24%), Positives = 123/299 (41%), Gaps = 31/299 (10%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ET + A SS + V+ L++ QV ++ IAEV + G Sbjct: 445 VSAVAETNTLLVRASAQAWSSIRDVIEKLDV-MPMQVHIEAQIAEVTLTGQLEYGVNWYF 503 Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268 + + P + + G + G + + + ++ AL+R T Sbjct: 504 ENAVNAPINADGSGGAGLAPAVGRGIWGDVSGSVTNNGLAWTFLGKNAAAIISALDRVTN 563 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322 +R L P++ + A+ G + + S +TG +SV D GV+L P V Sbjct: 564 LRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRV 623 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370 G + L I EVS P A + R+ T + +G TI+L Sbjct: 624 TKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAACNVDINTRRVKTEAAVQNGDTIML 683 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 AGL+ D +G+P LSK+P++G+LF NR E+ + TP +V+ P RDL+ Sbjct: 684 AGLIDDTTSDGSDGLPFLSKLPVVGSLFGRKTQNRNRREVIVLITPSIVRNPQDARDLT 742 >gi|78049053|ref|YP_365228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037483|emb|CAJ25228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 649 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 47/282 (16%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------------------------- 222 DQV ++ I + +G + ITG+ Sbjct: 367 RPVDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNTSAQRANEIA 426 Query: 223 SSGPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 ++G S + A+ G S + + F+ + L A++ Sbjct: 427 NTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSAMQEEGRGEV 486 Query: 272 LAEPTLTAISGQSASFTSGGQH-----LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 ++ P + + + G + + S +V + + L TPT+ + Sbjct: 487 VSNPRIVTANQREGVIKQGREIGYVTISGGGAAGSAAQANVQFKEVLLELKVTPTITNDN 546 Query: 327 RIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 R+ L + EV+ +I G +P R+ +T V + G T+V+ G+ + ++ Sbjct: 547 RVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESVS 606 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +P L IP LG LF+ ++E+ E+ + TP +++ + Sbjct: 607 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASAN 648 >gi|153870600|ref|ZP_01999967.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS] gi|152072935|gb|EDN70034.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS] Length = 494 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 99/241 (41%), Gaps = 22/241 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV ++ TIAEV+ + Q G +++ G +S Sbjct: 250 RQVLIEATIAEVQLNDQYQAGIDWQRIDGDFNYTQALTGGNLGNAPFYSFGYSNVASRLG 309 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------TG 303 + + LE+ +++ L+ P + A++ Q+A +Y T T Sbjct: 310 -NISATVRLLEQFGSVKVLSSPKIMALNNQTAILKVVDNIIYFTTEVEITETDTRTRETF 368 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYR 352 T + T G+V+ TP + + L I+ +S +P + Sbjct: 369 ETEINTVPVGLVMSVTPQISENNVVMLNIRPTISRIINFKVDPNPALAAAGTVNQIPEIQ 428 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 VR+ +T +++ G V+ GL++D Q+K+G+P+LS++P++G F E+TE+ I Sbjct: 429 VREIETILKINHGDIGVIGGLMQDTTNQIKKGVPVLSQLPLVGDFFSYRDDQYEKTELVI 488 Query: 413 A 413 Sbjct: 489 F 489 >gi|294666157|ref|ZP_06731413.1| general secretion pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604073|gb|EFF47468.1| general secretion pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 763 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 121/308 (39%), Gaps = 34/308 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ET A SS + V+ L++ QV ++ +AEV G Sbjct: 448 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGALSYGVNWYF 506 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERA 266 + + S S FGG + ++ G + + ++ AL+ Sbjct: 507 ENAVNAASDSTTYGFGGAGLPSAAGRNIWGDIAGRVTDGGVAWTFLGKNAAAIISALDTV 566 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTP 320 + +R L P++ + A+ G + + S +TG +SV D GV+L P Sbjct: 567 SNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSYSSVQYIDTGVILKVRP 626 Query: 321 TVLSPGRIGLRIQTEVSEPVIG------------VNAGDMPSYRVRKADTTVELPSGGTI 368 V G + L I E+S P +A R+ T + SG T+ Sbjct: 627 RVTKDGMVFLDIVQEISTPGARPAACTAETTTTVNSAACNVDINTRRVKTEAAVQSGDTM 686 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +LAGL+ D G+P LSK+PI+GALF N + E+ + TP +V+ ++ Sbjct: 687 MLAGLIDDSTTDGSVGVPFLSKLPIVGALFGRKTQNTDRREVIVLITPSIVR--NPKESR 744 Query: 429 RPDDHYSV 436 D Y+ Sbjct: 745 DLTDEYAR 752 >gi|157163858|ref|YP_001466818.1| PP family ATPase [Campylobacter concisus 13826] gi|157101371|gb|EAT98651.2| type II and III secretion system protein [Campylobacter concisus 13826] Length = 508 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 57/288 (19%), Positives = 112/288 (38%), Gaps = 31/288 (10%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSS 224 +K + + + QV + V+I V + + G S + Sbjct: 207 TATPSQLKRVEKYIAEMQRRLKKQVIIDVSIIAVDLNNEYKQGVDWSKFELGFNSYIGNP 266 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLD---RFSFETVLHALERATAIRTLAEPTLTAIS 281 G S S A + K S F + FS + +++ LE + ++ P +T ++ Sbjct: 267 GSSTSSYASWTNKGNSLSDGFGRTLNIAANLNFSLDGMINFLETNGKTKVVSSPKVTTLN 326 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVT------------THDYGVVLHFTPTVLSPGRIG 329 Q A + G Y+ + + ++ + G++L+ P V +I Sbjct: 327 NQQALISVGDNINYRVMEETDNGSNNNNNNRLTTTYKQYSVFIGILLNLLPEVSDNNKIM 386 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKA---------DTTVELPSGGTIVLAGLLKDDIQQ 380 LRI +S + + +R+ T V++ SG TI+L GL+ + Sbjct: 387 LRINPSLSSFKYAEDDTRSQNTAIREIAPDTVQKKLSTVVQVNSGDTIILGGLIGQTKDK 446 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +PLL+ IP++G++F+++R TE+ TP +V + + Sbjct: 447 QNTAVPLLADIPLIGSVFKSTRDGVRTTELIFVITPRVVDLEDAKPVQ 494 >gi|330813196|ref|YP_004357435.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp. IMCC9063] gi|327486291|gb|AEA80696.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp. IMCC9063] Length = 518 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 100/295 (33%), Gaps = 32/295 (10%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + + E T + KV+ +++ + QV ++ I E + Sbjct: 229 DSSYSPIQITEEITTRSIIVRGKEKDLDVVDKVIKEIDVRTK-QVLIEAFIVEADSTFEQ 287 Query: 212 QIGFQHSITGS----------------------SSGPSKSFAADFGGKFV-----SEGGD 244 +G + S GPS + Sbjct: 288 ALGTRLGGAYSAKKDYKIGGIGASSMASVTPPAGPGPSAAAIGGVTDALTDFAAVGATSG 347 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + + ALE +T++ P + + Q A+ T G + Y+ S Sbjct: 348 IGILRQTGSAVLKAEITALEVLGKGKTISNPKVFTLDNQIATITQGEEISYQATGSEGAD 407 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T + + + L TP+++ G + L I V+ + PS + T + + Sbjct: 408 T--SFKEAALKLTVTPSIIGDGNVLLEIM--VNNNTVNRANAGEPSINKMEISTKLLVAD 463 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G +V+ G+ K+ + K P + +P+LG LF+ + + E+ I P ++ Sbjct: 464 GDIVVIGGIKKNKVFSSKSQTPGVGNLPVLGNLFKGKSKSDKLDELLIFIAPRIL 518 >gi|87200666|ref|YP_497923.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87136347|gb|ABD27089.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 748 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 104/286 (36%), Gaps = 53/286 (18%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------- 245 +QV ++ I E+ D+ K++G Q G + + + ++ + G Sbjct: 387 EQVLVEAIIVEISNDVAKELGVQMLFGGKNMPFAVTNYSNSSPNIIDIAGGLLADNLNQT 446 Query: 246 --------------------------------------SVKGVLDRFSFETVLHALERAT 267 + + +++A++ Sbjct: 447 TTVVNGDTVTTTTNSTAGDLLRENAASKLLSARGAYTGFLTELSKDTYLGAIINAVQTDK 506 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVTTHDYGVVLHFTPT 321 L+ P +T + AS G + T + S ++ + G+ L TP Sbjct: 507 NSNILSTPHITTNNNVPASILFGQEIPVSTGEALSGGNFSDTFRTIQRQNVGIELDVTPQ 566 Query: 322 VLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + I L ++ EVS V+ + R+ TTV + + L GLL D+ Q+ Sbjct: 567 INASNMIRLDLRQEVSSIAGTVSKTSNELIVNKREIKTTVTVGDREIVALGGLLDDNEQR 626 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + +PLL IPILG F++ +R +T + + P +++ A R Sbjct: 627 TLQKVPLLGDIPILGEAFKSRARSRVKTNLMVFIRPTILRNAADRQ 672 >gi|103485810|ref|YP_615371.1| type II and III secretion system protein [Sphingopyxis alaskensis RB2256] gi|98975887|gb|ABF52038.1| type II and III secretion system protein [Sphingopyxis alaskensis RB2256] Length = 732 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 74/524 (14%), Positives = 157/524 (29%), Gaps = 100/524 (19%) Query: 3 YLQRTFFTMMSI-FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK----V 57 R + ++ L + L + AN+ V+ I + + ++ +++ Sbjct: 125 IRLRHIDAVAAVETLRPLVSAQGSLTANRNANSLVVADFADNIRRIRSLAASIDRDSSTS 184 Query: 58 IILQVPVDVQD--------------------VLVSDPTKADVVVHSPRTMYLF------- 90 I+ + V + ++ + + Sbjct: 185 QIVTLKNAGAREIAAALQALVPAAGEGARAPVAIVPIDSSNAIALRGDQALVTRFVAMAN 244 Query: 91 ---GKNVGQANVIL-IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 K G + + L L + + R + ++ Sbjct: 245 ELDAKAAGGTELRVYWLEHANAETLLPTLQQLIGGGSDPVQRAGLPPASSSSSGGDGNAA 304 Query: 147 LHGMVRTIQDSQRAV---------ELSETFLSQSGRNQYANSSSKKVMNLLNI---AGED 194 + + + + ANS ++++ L A Sbjct: 305 PAAAAPASSSTGAGGSGSISTRGPAIVTRYEGANAIIVAANSEVQRMLGELIRQLDARRQ 364 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD---------- 244 QV ++ + E+ D K++G Q + G + + ++ ++ GG Sbjct: 365 QVLVEAIVVEIGDDAAKRLGVQFLLGGKNIPFVATSYSNASPNILTLGGAYASTRISEET 424 Query: 245 ------------------------------------FSVKGVLDRFSFETVLHALERATA 268 + F +++A++ T Sbjct: 425 TTTDGTTVVTQTTSALGDALQEAAAAQLLSATGGFAGFAGDIGKNTIFGAIINAVKSDTT 484 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVL 323 LA P + + Q A F G T +V + G+ L TP V Sbjct: 485 SNLLATPHIVTLDNQPAKFLVGQDVPITTGEQLGDNFENAFRTVQREEVGIKLEVTPQVN 544 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G + + ++ EVS V++ + R +T + + G + + GLL DD ++ Sbjct: 545 GAGEVKMFLRQEVSSVAGPVSSRNSDLILNKRAFETVLTVDDGEILAIGGLLNDDERRTI 604 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 E IPLLS IP++G LF++ R +T + + P ++K Sbjct: 605 ERIPLLSDIPLIGELFKSRSRTRAKTNLMVFIRPTILKSREDNA 648 >gi|77163786|ref|YP_342311.1| fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC 19707] gi|254435512|ref|ZP_05049019.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus oceani AFC27] gi|76882100|gb|ABA56781.1| Fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC 19707] gi|207088623|gb|EDZ65895.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus oceani AFC27] Length = 699 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 102/273 (37%), Gaps = 31/273 (11%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ +K++ L+I QV ++ + D + +G + ++G A G Sbjct: 430 AALRKLVASLDIPVR-QVLIESRVVIASSDFSRDLGVRFGLSGRGDTSGTFDQATTSGSL 488 Query: 239 VSEGGDFS--------------VKGVLDRFSFETVLHAL-------------ERATAIRT 271 + D L L + Sbjct: 489 NGTTQIINRETLELQDRLNVNFPVTKKDAAKIALALTNLPLGALLELELSALQAEGRGEV 548 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P + + + A G + Y+ SS+GATSV+ + L TP + RI + Sbjct: 549 ISNPRVITSNQKEAIIEQGTEIPYQRA-SSSGATSVSFKKAVLSLTVTPQITPDDRIIMD 607 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + V++ +G +PS RK T V + +G T+VL G+ + + + IP L + Sbjct: 608 LG--VTKDSVGKVFNGVPSINTRKVATQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDL 665 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P G LFR+ + E+ I TP ++K A Sbjct: 666 PYAGILFRDKSEFNNKRELLIFVTPKIIKEGAR 698 >gi|325925811|ref|ZP_08187183.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118] gi|325543797|gb|EGD15208.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118] Length = 692 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 80/441 (18%), Positives = 155/441 (35%), Gaps = 49/441 (11%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 DP VV + + + G +V+ L +Q+L + + E + Sbjct: 234 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQD 293 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + + V S + V + + + V+ L++ Sbjct: 294 TRSTAMDVAAASGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 353 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246 +QV ++ + E+ K++G Q + G + ++ A G ++ + Sbjct: 354 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGT 412 Query: 247 VKGVLDRFS-------------------------------FETVLHALERATAIRTLAEP 275 G D S F ++ A++ T L+ P Sbjct: 413 RSGNADDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 472 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ + + A G + T + ++ D GV L P + + G I L Sbjct: 473 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 532 Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I+ EVS V+A + R+ +T V + +G + L GLL + +Q E +PLL Sbjct: 533 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 592 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVE-----DDAKAF 443 +P LGALFR+ NR++T + + P +++ + ++ P +Y E D +A Sbjct: 593 DVPGLGALFRHKSRNRDKTNLMVFIRPTVIRDAADAQRMTAPRYNYLRERQLADGDPEAA 652 Query: 444 FFNRVNKIYGPKEASEVEGQN 464 V + G + Sbjct: 653 LDALVRDYLRAQPPQLPAGPS 673 >gi|301165498|emb|CBW25069.1| putative pilus assembly protein [Bacteriovorax marinus SJ] Length = 609 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 65/359 (18%), Positives = 127/359 (35%), Gaps = 34/359 (9%) Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 L K G +I + I ++ + + + + ++ Sbjct: 246 LVAKKNGVILMITTFEKAAEEQKKAIEQKKLTEKEVPLVTKVFP-----ISYATTKELIE 300 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 + I + E T KK++++L+ QV ++ I EV + Sbjct: 301 VLNNYITERGTLNEDVRTNSLIVKDTADTIERIKKIVDVLDTQTP-QVLIESKIVEVNEN 359 Query: 209 ILKQIGFQHSIT-----------------------GSSSGPSKSFAADFGGKFVSEGG-D 244 K+IG Q+ + G+++GP SF++ + Sbjct: 360 YRKEIGLQNGVNFGYDPIGQIGSANPTVVGSDVLPGTNAGPGFSFSSAPSSGDGARSLFG 419 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 +V + L LE + + +A P + + + A ++ + S+ G Sbjct: 420 LTVTRFNRLLNLSFTLQLLETESKGKIVASPKVITQNKKKAVISTKETTSFSKSLSTNGQ 479 Query: 305 TS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + L TP V + G I L + + +A P + R+ T V Sbjct: 480 AQEITFEEAEASLSLEVTPQVTNEGSISLELDLLKQQFGTRPSAAAPPDKQERRVTTNVL 539 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN-SRFNREETEIFIAATPFLV 419 + +G TIV+ G+ + ++ G+P L IP++G LFR + E+ I TP +V Sbjct: 540 VDNGSTIVIGGVYNYEKRESHSGVPFLKDIPLVGWLFRTPYAPEVIKQELLIFLTPRIV 598 >gi|296105083|ref|YP_003615229.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059542|gb|ADF64280.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 213 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 3/200 (1%) Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G + +D + F++ G ++ + L ALE+ + +A P L A Sbjct: 12 GKVGQMTTLGSDLSVASATSHVGFNI-GRINGRLLDLELSALEQKQQVDIIASPRLLASH 70 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-- 339 Q AS G + Y+ S +GATSV + + + TP VL GR+ L++ + P Sbjct: 71 MQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPVVLPGGRVRLKLHISENMPGQ 130 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V+ G+ + ++ +T VE+ SG T+ L G+ + + +P L KIP LG LFR Sbjct: 131 VLQQADGETLAIDKQEIETQVEVKSGETLALGGIFSQKNKTGSDSVPGLGKIPWLGQLFR 190 Query: 400 NSRFNREETEIFIAATPFLV 419 + + E E+ + TP LV Sbjct: 191 HDGKDNERRELVVFITPRLV 210 >gi|146339226|ref|YP_001204274.1| putative general secretion pathway protein D signal peptide [Bradyrhizobium sp. ORS278] gi|146192032|emb|CAL76037.1| Putative general secretion pathway protein D; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 778 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 22/252 (8%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDFSVK 248 + QV ++ TIAEV Q G Q I G P D ++ G+ + Sbjct: 493 RPQRQVAIEATIAEVTLTDDLQFGVQSYIMSRDLGLKPDTGSFGDAASTALATAGNVVLN 552 Query: 249 GVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + F+F +L AL T ++ L+ P+L I Q A+ G + +T ++ Sbjct: 553 RAIPGFNFLVGSATTPRLILSALHAVTDVKVLSNPSLVVIDNQVATLQVGNEIPIQTGTA 612 Query: 301 S------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------ 348 + T A++ G++L P + + G + L ++ E+S + G N G+ Sbjct: 613 TVLTGNNTVASTTDYRSTGIILRVVPRINANGNVRLDVEQEISNALNGTNGGNGATNSLT 672 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ RK ++V + SG T++LAGL+ D + + GIP + +IP +G LF S N + T Sbjct: 673 PTVATRKLRSSVAVASGQTVLLAGLISDTQNRTRNGIPGIDQIPGIGDLFSQSGNNVQRT 732 Query: 409 EIFIAATPFLVK 420 E+ I P +++ Sbjct: 733 ELIIFIRPQIIR 744 >gi|78064721|ref|YP_367490.1| type II and III secretion system protein [Burkholderia sp. 383] gi|77965466|gb|ABB06846.1| type II and III secretion system protein [Burkholderia sp. 383] Length = 781 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 55/306 (17%), Positives = 104/306 (33%), Gaps = 39/306 (12%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 Q + T + + + V++ L+ QV ++ I E+ + Sbjct: 369 DDNQQGGMIQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELASNTQG 427 Query: 212 QIGFQHSITGSSSGPSKSFAADFG----------GKFVSEGGDFSVKGV----------- 250 +G Q + + G G + G + G+ Sbjct: 428 NLGIQWQVASGQFLGGTNLNPTAGLGNSIINLTAGGVTNAAGGITGGGLAANLGSLTQGL 487 Query: 251 --------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------- 295 +L + L+ P L + + A G Sbjct: 488 NIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIATGSYSN 547 Query: 296 -KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRV 353 + +++ + D G+ LH P + G + L++ TE S V +A P++ Sbjct: 548 LTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVAGTTSAQTGPTFTK 607 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R +T+ +G IVL GL++D+ Q +PLL IP +G LFR+ R +T + + Sbjct: 608 RSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKIRAKTNLMVF 667 Query: 414 ATPFLV 419 P ++ Sbjct: 668 LRPVII 673 >gi|332529515|ref|ZP_08405473.1| type II and III secretion system protein [Hylemonella gracilis ATCC 19624] gi|332041035|gb|EGI77403.1| type II and III secretion system protein [Hylemonella gracilis ATCC 19624] Length = 509 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 96/248 (38%), Gaps = 27/248 (10%) Query: 194 DQVTLKVTIAEVRRDILKQI------------------------GFQHSITGSSSGPSKS 229 QV ++ I E + + + + G+ G + Sbjct: 255 RQVLIEARIVEASDTFSRSLGARLGGAGGRSPSGGAGAGAGFGGSYSATAAGAGGGSFVN 314 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + G + S+ G + ALE + ++ P + A Sbjct: 315 LPSPGLGGQPAGVFAVSIFGESAARFLNLEISALEADGKGKVVSSPRVVTADKVKALIEQ 374 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 G + Y+ VS+S+GATS++ ++L TP + G + L +VS+ +G + Sbjct: 375 GTELPYQ-VSTSSGATSISFRKANLMLEVTPQITPEGNVILE--VDVSKDSVGQDTQAGF 431 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + T V + +GGT+V+ G+ + ++ IP L +P LGALFR E+ E Sbjct: 432 AIDTKHVKTQVLVENGGTVVIGGIYTQEERETVTKIPFLGDLPGLGALFRAKETRSEKRE 491 Query: 410 IFIAATPF 417 + + TP Sbjct: 492 MLVFITPK 499 >gi|327538204|gb|EGF24886.1| general secretion pathway protein D (outD) [Rhodopirellula baltica WH47] Length = 822 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 79/419 (18%), Positives = 160/419 (38%), Gaps = 53/419 (12%) Query: 27 PPIKEANAAVINISDVEIGKGKKIS-IGLNKVIILQVPVDVQDV---LVSDPTKADVVVH 82 + ++ I + + + +I IG ++++ ++ V L++ +A V Sbjct: 211 AADEAEMSSTIAAAQLLLSDRGRIQPIGRGAILVVDSKDNIDRVQQMLIAMLPEATVQST 270 Query: 83 SPRTMYLFGKNVG---QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI-RV 138 S + G + G A+ + +++ L + + + +L + + I V Sbjct: 271 SNPS---DGTSPGFQRPASPNVYDAMATEIIYLTPQFT-EASEMRESLEGALGEGTIVSV 326 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + +++ G ++ + +A + L++ QV + Sbjct: 327 YEAENRILIKGNRAQLELASQAFK------------------------QLDVP-RAQVRI 361 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----------FVSEGGDFSVK 248 I +V + L+++G +S AD G F ++ Sbjct: 362 TALIYDVSLEELEELGVNWGRGFRLDTTDESALADLAGNVEKAVTFGTLGSGGASSFGIR 421 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGA 304 + D F +L AL+ + + LA+P++TAI + AS Q S+ Sbjct: 422 TLTDTFDTSVLLRALDSSDEAKLLADPSITAIDRREASIKIVQQIPIVAASPAEGSNVVF 481 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 V D G++L TP + + I L++Q E S V + + P R A+TTV + + Sbjct: 482 AQVEFKDAGIILKVTPRISNDNTIELQVQPEYSVKVGEIE--NNPVIDSRTAETTVRVAN 539 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G L GL + I + G+P L + +G LFR+ E+E+ + P ++ P Sbjct: 540 GHMFTLGGLRQKRIIEGTSGVPYLRDLKYVGKLFRSHSTEVRESELIVFLKPEIISPYD 598 >gi|153868094|ref|ZP_01998196.1| Bacterial type II and III secretion system protein [Beggiatoa sp. SS] gi|152144586|gb|EDN71804.1| Bacterial type II and III secretion system protein [Beggiatoa sp. SS] Length = 219 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 3/208 (1%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTL 272 GF T + G ++F + G + + + L A++ + + Sbjct: 12 GFTSDNTLTGEGQGENFIVSLPAIVEGTPASLGLAIGKIGSYLLQLELSAMQSEGSGEII 71 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + P + + Q A T G + Y + V + L TP + RI + + Sbjct: 72 SSPRIITGNQQEAIITQGSEIPYVESAGVGAVAQVQFKQAVLELKVTPQITPDDRINMEL 131 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + +N S R+ T V + +G T+VL G+ + +P LS +P Sbjct: 132 SIKKDSVGARINGN--ISIDKREVKTNVLVDNGDTVVLGGVYERSSSNNITRVPFLSDLP 189 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420 ++G LF+ +++E+ I TP ++K Sbjct: 190 LIGNLFKRRSSQDDKSELLIFVTPRIIK 217 >gi|55981352|ref|YP_144649.1| general secretion pathway protein PilQ [Thermus thermophilus HB8] gi|55772765|dbj|BAD71206.1| general secretion pathway protein (PilQ) [Thermus thermophilus HB8] Length = 757 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 73/353 (20%), Positives = 144/353 (40%), Gaps = 35/353 (9%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRF--IADSNIRVEMVSDTVVLHGMVRTIQD 156 +++ G+ +L++ E+ +A +E L + + V + + V Q Sbjct: 414 IVVQTVPGQPVLSVR-GTEKQLAEVESLLAQIDRAPEQGPPVFQRAYQLSNAKAVELAQV 472 Query: 157 SQRAVEL----SETFLSQSGRNQYANSSSKKVMNLLNIAGED------------------ 194 Q A++ ++ +Q+ + A + N L + G Sbjct: 473 LQEALKARQAQNQGQQNQALPTREATVVADPRTNTLIVTGTQEDLALVEGLIPKLDQPVP 532 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV+L+V I EV+ ++ + +G + + + + + F S L Sbjct: 533 QVSLRVRIQEVQSNLTRSLGLKWNSIAGGNVAASILDSGLSLIFDS-------TRSLAAL 585 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + L AL++ R L + T ++ Q+A SG + V + D G+ Sbjct: 586 NIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVNDQVERV--PFDVGL 643 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGL 373 ++ TP + + G+I L I+ E+S V GD+ + + TT+ + G T+VL GL Sbjct: 644 IVEVTPQITADGQILLNIKAEISGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGGL 703 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + Q ++G+PLL IP++G LF+ + E+ + T ++K A + Sbjct: 704 TSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKETASAN 756 >gi|32477970|ref|NP_870964.1| general secretion pathway protein D (outD) [Rhodopirellula baltica SH 1] gi|32448527|emb|CAD78042.1| general secretion pathway protein D (outD) [Rhodopirellula baltica SH 1] Length = 822 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 16/245 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----------FVSEG 242 QV + I +V + L+++G +S AD G Sbjct: 356 RAQVRITALIYDVSLEELEELGVNWGRGFRLDTTDESALADLAGNVEKAVTFGTLGSGGA 415 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTV 298 F ++ + D F +L AL+ + + LA+P++TAI + AS Q Sbjct: 416 SSFGIRTLTDTFDTSVLLRALDSSDEAKLLADPSITAIDRREASIKIVQQIPIVAASPAE 475 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 S+ V D G++L TP + + I L++Q E S V + + P R A+T Sbjct: 476 GSNVVFAQVEFKDAGIILKVTPRISNDNTIELQVQPEYSVKVGEIE--NNPVIDSRTAET 533 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TV + +G L GL + I + G+P L + +G LFR+ E+E+ + P + Sbjct: 534 TVRVANGHMFTLGGLRQKRIIEGTSGVPYLRDLKYVGKLFRSHSTEVRESELIVFLKPEI 593 Query: 419 VKPVA 423 + P Sbjct: 594 ISPYD 598 >gi|162417759|ref|YP_001604484.1| type III secretion outer membrane pore YscC [Yersinia pestis Angola] gi|294496845|ref|YP_003560542.1| type III secretion outer membrane pore YscC [Yersinia pestis Z176003] gi|162354779|gb|ABX88726.1| type III secretion outer membrane pore YscC [Yersinia pestis Angola] gi|294352433|gb|ADE66490.1| type III secretion outer membrane pore YscC [Yersinia pestis Z176003] Length = 612 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 E + L+R ++D+ I+ V + + Q + RA ++ S Sbjct: 210 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 262 Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S +++ L++ + ++V +I ++ D L ++G + + + Sbjct: 263 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 322 Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G S G S+ ++ LE + + ++ PTL A Sbjct: 323 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 382 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345 + K + YG +L TP VL+ G I L + E ++ Sbjct: 383 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 440 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ DT + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 441 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 500 Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429 T P ++ L+ Sbjct: 501 RRTVRLFIIEPRIIDEGIAHHLAL 524 >gi|289549028|ref|YP_003474016.1| general secretion pathway protein D [Thermocrinis albus DSM 14484] gi|289182645|gb|ADC89889.1| general secretion pathway protein D [Thermocrinis albus DSM 14484] Length = 637 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 62/315 (19%), Positives = 122/315 (38%), Gaps = 28/315 (8%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAEVR 206 V ++ + + + S + K++ L++ QV + ++ E+ Sbjct: 317 TVPPAIQTREGLRIGYDRGTNSLLVYATPKELENLQKLIKKLDVR-RKQVLIAASVVEMS 375 Query: 207 RDILKQIGFQHSITGSSSG-----------PSKSFAADFGGKFVSEGGDFSVKGVLDRF- 254 +G + I G+ G S + +F +S G G + F Sbjct: 376 TTKALDLGVRWQILGTQGGGAFGGSTLQDLSSALLSGNFVLGLLSSSGRSITVGGTNLFF 435 Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVTT 309 + LE+ T L+ P L + Q A G + + + + Sbjct: 436 PDLVLLFSLLEKGTGFNLLSNPKLLTLDNQPAEIKVGQVVPFASGVKFDINGQPVITYDY 495 Query: 310 HDYGVVLHFTPTVLSPG---RIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPS 364 + G+ L TP+V I L++Q + P IG + +P R+ ++ V + + Sbjct: 496 KEVGLDLRITPSVSEKNLRLSISLQVQEIIDFLRPQIGTLSYAVPVTSNRQVNSEVVVEN 555 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G TI++ GL+ + EG+P L +P+LG LF+ ++ +FI TP++++ + Sbjct: 556 GQTIIIGGLINTRALRSTEGVPGLQDVPVLGWLFKRKTTQEDKVSLFIFITPYVIE--SP 613 Query: 425 RDLSRPDDHYSVEDD 439 +LSR + D Sbjct: 614 EELSRITQEHQKLAD 628 >gi|94267441|ref|ZP_01290880.1| type II and III secretion system protein:Secretin/TonB, short-like [delta proteobacterium MLMS-1] gi|93452009|gb|EAT02711.1| type II and III secretion system protein:Secretin/TonB, short-like [delta proteobacterium MLMS-1] Length = 555 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 65/323 (20%), Positives = 118/323 (36%), Gaps = 49/323 (15%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTI 202 ++ G R +D +A ++ S + ++V ++ L QV L+ I Sbjct: 206 MIVGTDRGREDGSQARQVIVNSKSGLVMVRALPGELREVETFLDALLENALRQVMLEAKI 265 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------- 252 EV D Q G +S F GG + +G + Sbjct: 266 IEVELDEAFQSGINWGQLATSGSGEWQFGQIGGGTVLDDGVSAIAGNTGNIGVDNFDPID 325 Query: 253 ----------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 R +F + L+ + L+ P + + Q A G + Sbjct: 326 GTATSAFGGVFTMAADRSNFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEYFV 385 Query: 297 TVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 T S + T +T G+ L TPT+ + L I+ VS+ + Sbjct: 386 TDVSFSTRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQTKS 445 Query: 346 GDMPSYRV---------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + R++D+ V SG I++ GL++D ++ + G+P L +P++G Sbjct: 446 FTVAGQTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLVGN 505 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFR R+++ +TE+ I P +V Sbjct: 506 LFRQQRWSQRKTELVILLRPVVV 528 >gi|225850524|ref|YP_002730758.1| putative pilus [Persephonella marina EX-H1] gi|225645353|gb|ACO03539.1| putative pilus [Persephonella marina EX-H1] Length = 524 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 22/255 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K + + + QV ++ I EV Q G S + + S Sbjct: 269 EKFLKKILSEVKKQVLIESKIVEVTLSDGMQYGINWSALLRNVAGASISLRQTLALPSSY 328 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + V+ F V++AL I TL+ P + ++GQ+A +SG Y + Sbjct: 329 G-----EVVVAGLDFNAVINALSSVGRIETLSNPRIRVLNGQTALISSGVVVPYWEKQIT 383 Query: 302 TGATSVTTHDY---------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------A 345 T T+ T GV+L TP + I + I ++ Sbjct: 384 TLGTTTVTQSVMYIRRSVLSGVLLGVTP-YIEGDHIMINIVPVSTKIEGTKQLVENNEVV 442 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + P +++A T +++ G I++ G++ + + + IPLLS IP+ G LF+N + R Sbjct: 443 AEAPVLNIKEAGTIIKVKDGDLIIIGGMINTEKRVEENKIPLLSNIPVFGNLFKNKKVYR 502 Query: 406 EETEIFIAATPFLVK 420 E+ E+ I P ++K Sbjct: 503 EKKELIIFLKPRIIK 517 >gi|166713254|ref|ZP_02244461.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 648 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 47/281 (16%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223 DQV ++ I + +G + I G++ Sbjct: 366 RPVDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYQNTSAQRASEIA 425 Query: 224 ------------SGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIR 270 + GG F + G + + F+ + L A+++ Sbjct: 426 NGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELSAMQQEGRGE 485 Query: 271 TLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 ++ P + + + G + + + + +V + + L TPT+ + Sbjct: 486 VVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELKVTPTITNDN 545 Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 R+ L + + E ++ G +P R+ +T V + G T+V+ G+ + ++ Sbjct: 546 RVFLSMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVYEFTDRESVA 605 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 +P L IP LG LF+ ++E+ E+ + TP +++ + Sbjct: 606 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 646 >gi|21232657|ref|NP_638574.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767269|ref|YP_242031.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. 8004] gi|21114464|gb|AAM42498.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572601|gb|AAY48011.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. 8004] Length = 648 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 97/282 (34%), Gaps = 47/282 (16%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223 DQV ++ I + +G + +TG++ Sbjct: 366 RPVDQVLIESRIVIATDTFARDLGARFGVTGATGRGILSGSLESNVNYLNTSAQSRLEQA 425 Query: 224 ------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 + GG S + + F+ + L A++ Sbjct: 426 NGGQVTTLPAHLFPSGLNVDLGAGGFTNSGAAGLAYTLLGSHFNLDIELSAMQEEGRGEV 485 Query: 272 LAEPTLTAISGQSASFTSGGQH-----LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 ++ P + + + G + V+ +V + + L TPT+ + Sbjct: 486 VSNPRIVTANQREGVIKQGREIGYVTISGAGVAGGGSQANVQFKEVLLELKVTPTITNDN 545 Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 R+ L + + E + G +P R+ +T V + G T+V+ G+ + ++ Sbjct: 546 RVFLNMNVKKDEVARFITLPQYGTVPEINRREVNTAVLVADGETVVIGGVYEFTDRESVA 605 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +P L IP LG LF+ ++E+ E+ + TP +++ + Sbjct: 606 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASAA 647 >gi|16082740|ref|NP_395186.1| outer membrane secretin precursor [Yersinia pestis CO92] gi|31795269|ref|NP_857730.1| outer membrane secretin precursor [Yersinia pestis KIM] gi|31795473|ref|NP_857925.1| outer membrane secretin precursor [Yersinia pestis KIM] gi|45478532|ref|NP_995359.1| putative type III secretion protein YscC [Yersinia pestis biovar Microtus str. 91001] gi|108793654|ref|YP_636804.1| type III secretion protein [Yersinia pestis Antiqua] gi|145597132|ref|YP_001154596.1| type III secretion protein [Yersinia pestis Pestoides F] gi|149192687|ref|YP_001293919.1| Type III secretion outer membrane pore protein [Yersinia pestis CA88-4125] gi|165927821|ref|ZP_02223653.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. F1991016] gi|165940102|ref|ZP_02228636.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. IP275] gi|166011759|ref|ZP_02232657.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. E1979001] gi|166214450|ref|ZP_02240485.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. B42003004] gi|167401969|ref|ZP_02307455.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422893|ref|ZP_02314646.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426864|ref|ZP_02318617.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229896868|ref|ZP_04512028.1| Type III secretion outer membrane pore protein [Yersinia pestis Pestoides A] gi|229900223|ref|ZP_04515359.1| Type III secretion outer membrane pore protein [Yersinia pestis biovar Orientalis str. India 195] gi|270491097|ref|ZP_06208169.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis KIM D27] gi|322836578|ref|YP_004210074.1| type III secretion outer membrane pore YscC [Yersinia pestis Java 9] gi|155446|gb|AAA27638.1| KIM5 [Yersinia pestis] gi|2996229|gb|AAC62552.1| Yop proteins translocation protein C homolog [Yersinia pestis KIM 10] gi|3822061|gb|AAC69781.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832472|emb|CAB54929.1| putative type III secretion protein [Yersinia pestis CO92] gi|45357154|gb|AAS58550.1| putative type III secretion protein YscC [Yersinia pestis biovar Microtus str. 91001] gi|108782201|gb|ABG16256.1| type III secretion protein [Yersinia pestis Antiqua] gi|145212900|gb|ABP42306.1| type III secretion protein [Yersinia pestis Pestoides F] gi|148872345|gb|ABR14835.1| Type III secretion outer membrane pore protein [Yersinia pestis CA88-4125] gi|165912012|gb|EDR30655.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. IP275] gi|165920257|gb|EDR37558.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. F1991016] gi|165989366|gb|EDR41667.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. E1979001] gi|166204343|gb|EDR48823.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. B42003004] gi|166958183|gb|EDR55204.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048697|gb|EDR60105.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054163|gb|EDR63990.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229686743|gb|EEO78823.1| Type III secretion outer membrane pore protein [Yersinia pestis biovar Orientalis str. India 195] gi|229700139|gb|EEO88178.1| Type III secretion outer membrane pore protein [Yersinia pestis Pestoides A] gi|262364013|gb|ACY64350.1| outer membrane secretin precursor [Yersinia pestis D182038] gi|270334840|gb|EFA45619.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis KIM D27] gi|317374471|gb|ADV16646.1| type III secretion outermembrane pore forming protein [Yersinia pestis] gi|321161352|gb|ADW67058.1| type III secretion outer membrane pore YscC [Yersinia pestis Java 9] Length = 607 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 E + L+R ++D+ I+ V + + Q + RA ++ S Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 257 Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S +++ L++ + ++V +I ++ D L ++G + + + Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317 Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G S G S+ ++ LE + + ++ PTL A Sbjct: 318 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345 + K + YG +L TP VL+ G I L + E ++ Sbjct: 378 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ DT + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 436 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495 Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429 T P ++ L+ Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519 >gi|115376293|ref|ZP_01463533.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella aurantiaca DW4/3-1] gi|310823667|ref|YP_003956025.1| type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1] gi|115366718|gb|EAU65713.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella aurantiaca DW4/3-1] gi|309396739|gb|ADO74198.1| Type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1] Length = 906 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 49/289 (16%), Positives = 94/289 (32%), Gaps = 36/289 (12%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 T + + ++ ++ L+ QV ++ I E + IG Q G + Sbjct: 612 VRTNVLIVKDVRANIEKARALVRNLDTQTP-QVLIESRIVEATTAFSRSIGVQWGGRGQA 670 Query: 224 SGPSKSFAA--------------------------------DFGGKFVSEGGDFSVKGVL 251 + + + F+ Sbjct: 671 NAATGNATGLIFPNTIGGFGSAGGGTPAGFSGDPGFAVNLPAPTTLGQGGALGFTFGSAG 730 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 L A E ++T++ P +T + +A +S + T + Sbjct: 731 GALGLNLRLSAAENDGYVKTISAPKVTTLDNNTARI--SQGVSIPFSQTSANGANTTFIE 788 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVL 370 + L TP + G I + I + ++P P+ + ++A+T V + G T V+ Sbjct: 789 ARLSLEVTPHITQDGSILMNIIAQNNQPDAANTGANGQPAIQRKEANTQVLVKDGDTTVI 848 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ IP SKIP+LG FR + + E+ I TP ++ Sbjct: 849 GGIYVRRGSTNHASIPFFSKIPVLGFFFRQTTERDDRQELLIFITPRIL 897 >gi|188990167|ref|YP_001902177.1| exported type II protein secretion system protein D [Xanthomonas campestris pv. campestris str. B100] gi|167731927|emb|CAP50113.1| exported type II protein secretion system protein D [Xanthomonas campestris pv. campestris] Length = 690 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 69/397 (17%), Positives = 134/397 (33%), Gaps = 43/397 (10%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 DP VV + + + G +V+ L +Q+L + + E + Sbjct: 234 GDPALVQRVVRTALDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAEPGQE 293 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + + V + + V + + + V+ L++ Sbjct: 294 TRPTAVDVAASAGAAQAQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 353 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 +QV ++ + E+ K++G Q + G + G + G Sbjct: 354 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLLATQYSGAAPGIVPLAAAAAGT 412 Query: 251 LDRFS-----------------------------------FETVLHALERATAIRTLAEP 275 F ++ A++ T L+ P Sbjct: 413 RSNNGEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 472 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ + + A G + T + ++ D GV L P + + G I L Sbjct: 473 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 532 Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I+ EVS V+ + R+ +T V + +G + L GLL + +Q E +PLL Sbjct: 533 AIKQEVSAIAGPVSTQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 592 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +P LGALFR+ NR++T + + P +++ A Sbjct: 593 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQ 629 >gi|21232854|ref|NP_638771.1| type II secretion system protein D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767075|ref|YP_241837.1| type II secretion system protein D [Xanthomonas campestris pv. campestris str. 8004] gi|21114682|gb|AAM42695.1| type II secretion system protein D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572407|gb|AAY47817.1| type II secretion system protein D [Xanthomonas campestris pv. campestris str. 8004] Length = 690 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 69/397 (17%), Positives = 134/397 (33%), Gaps = 43/397 (10%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 DP VV + + + G +V+ L +Q+L + + E + Sbjct: 234 GDPALVQRVVRTALDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAEPGQE 293 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + + V + + V + + + V+ L++ Sbjct: 294 TRPTAVDVAASAGAAQAQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 353 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 +QV ++ + E+ K++G Q + G + G + G Sbjct: 354 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLLATQYSGAAPGIVPLAAAAAGT 412 Query: 251 LDRFS-----------------------------------FETVLHALERATAIRTLAEP 275 F ++ A++ T L+ P Sbjct: 413 RSNNGEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 472 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ + + A G + T + ++ D GV L P + + G I L Sbjct: 473 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 532 Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I+ EVS V+ + R+ +T V + +G + L GLL + +Q E +PLL Sbjct: 533 AIKQEVSAIAGPVSTQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 592 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +P LGALFR+ NR++T + + P +++ A Sbjct: 593 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQ 629 >gi|312143742|ref|YP_003995188.1| type II and III secretion system protein [Halanaerobium sp. 'sapolanicus'] gi|311904393|gb|ADQ14834.1| type II and III secretion system protein [Halanaerobium sp. 'sapolanicus'] Length = 431 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 69/339 (20%), Positives = 134/339 (39%), Gaps = 51/339 (15%) Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142 + T+Y+ + N+ K + +L + L++ +D N + + S Sbjct: 95 TENTIYVSSRE----NIEAQDK--KLIKKNYLLENINSERAIEHLQKIFSDLNF-INLES 147 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 D ++L + ++ Q+ +L + QV +K I Sbjct: 148 DGILLE---ASEKEHQQIEKLIAGLD----------------------RPQKQVLIKARI 182 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 E+ R+ +K++G F+ + K ++ L Sbjct: 183 EEISRNKVKELGINPDQLSE-------------LSFIKDDSGSIEKIRVNWPD---TLKI 226 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTP 320 LE A LA P+L + Q A G Q K V +S++ + G+VL F P Sbjct: 227 LEEEGASNILANPSLMTLDRQKAKLVIGDQIPVKLERVEGDNIVSSLSYIEAGIVLEFLP 286 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 +++ +I L I+ V+ V + +P+ R A+TTV L + + + GL+K+D + Sbjct: 287 KIINDNQILLEIKPSVNSI-GQVVSDGLPAVNSRSAETTVILENEQVLAIGGLIKEDEIK 345 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP S++P+ G LF++ + +E+ I +P ++ Sbjct: 346 SLSKIPFFSELPLFGNLFKSEKSTVMNSELMIFISPEII 384 >gi|320451127|ref|YP_004203223.1| general secretion pathway protein [Thermus scotoductus SA-01] gi|320151296|gb|ADW22674.1| general secretion pathway protein [Thermus scotoductus SA-01] Length = 754 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 67/298 (22%), Positives = 124/298 (41%), Gaps = 29/298 (9%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------------ 194 L +++ +++A ++ ++ + A + + N L + G Sbjct: 467 LAKVLQEALQARQA-QVPQSQAQPQAPTRQATVVADERTNTLIVTGTQEDLALVEGLIPK 525 Query: 195 ------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 QV L+V I EV+ + + +G + + + + + F S Sbjct: 526 LDQAVPQVNLRVRIQEVQSNFTRNLGIKWNTIAGGNVAASILDSGLSLIFDS-------T 578 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 L + L AL+R R L + T ++ Q+A SG L + V Sbjct: 579 RSLAALNILATLEALQRQGLSRALRDVNQTVLNNQTARLQSGETFLIRRVV--NDRVERV 636 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGT 367 D G+++ TP + + G+I L I+ EVS V GD+ + + TT+ + G T Sbjct: 637 PFDIGIIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVRDGQT 696 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL GL + Q+++G+PLL IP++G LF+ + E+ + T ++K A R Sbjct: 697 VVLGGLTSQENTQVQQGVPLLMDIPLIGELFKQRSQETTDRELLVVITADILKETASR 754 >gi|315500691|ref|YP_004089492.1| type II and III secretion system protein [Asticcacaulis excentricus CB 48] gi|315418703|gb|ADU15341.1| type II and III secretion system protein [Asticcacaulis excentricus CB 48] Length = 626 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 13/274 (4%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R V ET + + V+N ++ QVT++ +I EV + G Sbjct: 334 RIVADKETNTVIVSAPEAERVRIQSVLNEVD-REPAQVTIEASIVEVTLNNEFSFGVDWQ 392 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + S + G + R + L+AL + +R ++ P +T Sbjct: 393 TINGALSLSNYTTDSTSLAPQAPGFSVNYL----RSDIKAALNALSSKSKVRIVSAPKMT 448 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 A +AS G Q +S + +++ D GV L TP VL+ R+ + Sbjct: 449 ARENATASLQIGDQVPIVKQNSQSTNGGNAPIVSTIDYRDTGVTLKVTPRVLNDNRVAMD 508 Query: 332 IQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + EVS + D P+ + RK ++++ +P G + L GL+ + G PLL Sbjct: 509 VTQEVSSVARTQTSGIDSPTIKQRKLESSLIIPEGTVVALGGLISSSESDSEGGAPLLKD 568 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP LG LF+ N++ TE+ + +++ A Sbjct: 569 IPGLGNLFKQRARNKDRTELIVLIQVTILRDPAA 602 >gi|459551|gb|AAA16704.1| fimbrial assembly protein [Pseudomonas aeruginosa PAO1] Length = 727 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 35/269 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228 ++++ L+I QV ++ I E K +G + S Sbjct: 451 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKDGNIGIKDEDG 509 Query: 229 --------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI----- 269 + + FV G + G+ F + ++ L+ Sbjct: 510 MNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSGIGIGFITDNIILDLQPVGDGKDRQR 569 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 R +++P + ++A G + Y+ SSS ++ + + + L TP + RI Sbjct: 570 RVVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 628 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + ++ P +P + + + + G TIV+ G+ ++ + E +P L Sbjct: 629 VEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLG 688 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418 ++P LG LFR + E+ + TP + Sbjct: 689 ELPYLGRLFRRDTVTDRKNELLVFLTPRI 717 >gi|88811950|ref|ZP_01127203.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis Nb-231] gi|88790834|gb|EAR21948.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis Nb-231] Length = 686 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 64/363 (17%), Positives = 131/363 (36%), Gaps = 37/363 (10%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + G ++ + L++ ++ I L FI + + + ++ ++ G Sbjct: 322 RQTGNVMLVAPAAEIAAREKLELQAKQQIQQLAPLHSEFIQVNYAKAQDLAQLILGGGQK 381 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDI 209 S R + + + ++++ L+I QV ++ + D Sbjct: 382 GRSLLSDRGTVNVDERTNTLITRDTEQNLDDIRRLVSKLDIPVR-QVLIESRVVIANDDF 440 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKF------------------------------- 238 ++G + + + S S G Sbjct: 441 TNELGVRFGYSRNQSNFGTSNHGAVIGGTQPGNVNFGQSTGFEVPAGSGNEGLLVDLPVT 500 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + G G + + + L A+E ++ P + + + A G Q ++ Sbjct: 501 AAAGSVGLAVGKIGSYLLQLELSAMENENRGNLISTPRVITTNQKEAYIKQGVQIPFQQA 560 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 +SS GATSV + + L TP + RI L + +V++ G P+ + T Sbjct: 561 TSS-GATSVQFKEAVLGLTVTPQITPDDRILLDL--QVTKDSRGEQTNAGPAINTQSLGT 617 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + +G TIVL G+ + + + +P ++P+LG LFRN+ E+ I TP + Sbjct: 618 QVLVDNGETIVLGGVYERNKNRTINRVPFFGELPLLGWLFRNTVRVDNNKELLIFVTPKI 677 Query: 419 VKP 421 +K Sbjct: 678 LKA 680 >gi|186897497|ref|YP_001874608.1| YscC/HrcC family type III secretion outer membrane protein [Yersinia pseudotuberculosis PB1/+] gi|186700523|gb|ACC91151.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pseudotuberculosis PB1/+] Length = 607 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 E + L+R ++D+ I+ V + + Q + RA ++ S Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 257 Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S +++ L++ + ++V +I ++ D L ++G + + + Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317 Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G S G S+ ++ LE + + ++ PTL A Sbjct: 318 KTTGDKSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345 + K + YG +L TP VL+ G I L + E ++ Sbjct: 378 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ DT + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 436 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495 Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429 T P ++ L+ Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519 >gi|296113651|ref|YP_003627589.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4] gi|295921345|gb|ADG61696.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4] gi|326566933|gb|EGE17071.1| type IV pilus secretin PilQ [Moraxella catarrhalis 12P80B1] gi|326568865|gb|EGE18935.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC8] Length = 473 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 29/296 (9%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + G + + + + + + T + Q AN + ++ ++I +QV ++ I Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241 Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGG----------------DFS 246 + +++G G + G S+ + V+ GG Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAMGRI 301 Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 G+L+ + L A++ ++ P + Q+A +SG Q Y+ + S + Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T + ++L TP + G+IGL++ + PV + + +T V + Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+ Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473 >gi|326560015|gb|EGE10410.1| type IV pilus secretin PilQ [Moraxella catarrhalis 46P47B1] Length = 473 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 29/296 (9%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + G + + + + + + T + Q AN + ++ ++I +QV ++ I Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241 Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGG----------------DFS 246 + +++G G + G S+ + V+ GG Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAMGRI 301 Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 G+L+ + L A++ ++ P + Q+A +SG Q Y+ + S + Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T + ++L TP + G+IGL++ + PV + + +T V + Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+ Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473 >gi|294791632|ref|ZP_06756780.1| putative type II and III secretion system protein [Veillonella sp. 6_1_27] gi|294456862|gb|EFG25224.1| putative type II and III secretion system protein [Veillonella sp. 6_1_27] Length = 432 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 9/275 (3%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L +V T+ + + LSE + ++ ++ QV L+ TI + Sbjct: 165 LKNVVGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLVRAID-KEPKQVQLEATIIAME 223 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + K+ GF+ S D + + + G +F + L +E + Sbjct: 224 QSYAKEQGFRWS-----WLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPELSLMESS 278 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324 +A+P++ A++G++A G + S G + G+ L++TP + + Sbjct: 279 GKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 338 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + +I EVS P I V+ R+A T V L G +V+ GL+ + Q + Sbjct: 339 DGGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 397 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+L IP+LG LFR+SR ++ E+ + +V Sbjct: 398 IPILGDIPLLGKLFRHSRKTKDSIEMLMLVRATVV 432 >gi|325914232|ref|ZP_08176582.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC 35937] gi|325539487|gb|EGD11133.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC 35937] Length = 778 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 120/307 (39%), Gaps = 39/307 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ET + +S + V+ L++ QV ++ IAEV + G Sbjct: 454 VSAVAETNTLLVRSTPQSWNSIRDVIEKLDV-MPMQVHIEAQIAEVNLTGELRYGVNWYF 512 Query: 220 TG--------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD------------RFSFETV 259 + +G + G + G + + + Sbjct: 513 ENAVNAPGAATDNGVTNGTGIGLGAGLANAAGRNIWGDIAGKVGSGGLAWSFLGKNAAAI 572 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYG 313 + AL+ T +R L P++ + A+ G + + S +TG +SV D G Sbjct: 573 ISALDTVTNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTG 632 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVEL 362 V+L P V G + L I EVS P A R+ T + Sbjct: 633 VILKVRPRVTKDGMVFLDIVQEVSSPGDRPTACASATATVNQAACNVDINTRRIKTEAAI 692 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-P 421 SG TI+LAGL++D G+P LSK+P+LG+LF N+ +E+ + TP +V+ P Sbjct: 693 QSGDTIMLAGLIQDSTSDGSAGVPFLSKLPVLGSLFGQKTQNKRRSEVIVLLTPSIVRNP 752 Query: 422 VAMRDLS 428 + R+L+ Sbjct: 753 MEARNLT 759 >gi|284432091|gb|ADB84853.1| PilQ [Bdellovibrio bacteriovorus] Length = 726 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 54/328 (16%), Positives = 121/328 (36%), Gaps = 22/328 (6%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 LE R S +V+ + + + D R V T + + Sbjct: 405 LEPLKVRMFPVSYAKVDELEKKIK-----DFLGDRGRVVGDVRTNALVVTDIEENLERAA 459 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSF 230 +++ L+ QV+++ I E + + IG S TG+ + PS + Sbjct: 460 RLIASLD-TQPAQVSIEGXIVEAKESFTRNIGVNWSATGAPIKLGSTXRGPVNMNPSFNV 518 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G + + +V + + L E ++ ++ P + +S + A Sbjct: 519 NQSAAGSSGALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQT 578 Query: 291 GQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTE--VSEPVIGVNAG 346 + + V+ + AT + L TP V + G + +++ + Sbjct: 579 TEVPVRQVTQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQ 638 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + R+A+T V + +G T V+ G+ + + + G+P ++P + LF+ ++E Sbjct: 639 GAFAVNSREANTRVLVKNGQTAVIGGIYQSEATDGEVGVPWFRQLPFVSYLFKTKNISKE 698 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++E+ I TP ++ + + + Sbjct: 699 KSELLILLTPRIMGQIDNNAGNPTTTDF 726 >gi|307720370|ref|YP_003891510.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] gi|306978463|gb|ADN08498.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] Length = 504 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 54/270 (20%), Positives = 98/270 (36%), Gaps = 20/270 (7%) Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 L ++ + ++LL QV ++V + E+ D G S S Sbjct: 209 ASLLTVNADKKDLQKIQNFLDLLMKRMHKQVLIEVKLIELVYDDSHSSGIDWSQLNVSLN 268 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + GG + + F L ++ ++ P + ++ Q A Sbjct: 269 GTLGGTQGTGGNTFNNSYSIAYNFSTSNF-----FKYLNTFGDVKVMSNPKILTMNNQPA 323 Query: 286 SFTSGGQHLYKTVSSSTGATSVTT----------HDYGVVLHFTPTVLSPGRIGLRIQTE 335 G Q YK + S T T G+ L+ P + I + I Sbjct: 324 VVNVGQQLSYKYQTGSVTTTGGTAAGTNTFSLGSTFIGITLYVIPEITDSNEILMSINPV 383 Query: 336 VSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 VS P ++++ + V++ +G +++ GL+ + + IP+L Sbjct: 384 VSSLSADNTPTTSIREIPPDTKIKQMTSVVKVKNGQKVLIGGLISATKGKDSKKIPILGD 443 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420 IPIL +FR + + TE+FI TP +VK Sbjct: 444 IPILSTIFRYTNNKKSRTEMFILITPKIVK 473 >gi|51593921|ref|YP_068488.1| yscC; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] gi|51591618|emb|CAF25422.1| yscC; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] Length = 607 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 E + L+R ++D+ I+ V + + Q + RA ++ S Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 257 Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S +++ L++ + ++V +I ++ D L ++G + + + Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317 Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G S G S+ ++ LE + + ++ PTL A Sbjct: 318 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345 + K + YG +L TP VL+ G I L + E ++ Sbjct: 378 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ DT + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 436 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495 Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429 T P ++ L+ Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519 >gi|218458719|ref|ZP_03498810.1| pilus assembly secretion protein [Rhizobium etli Kim 5] Length = 258 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 95/233 (40%), Positives = 142/233 (60%), Gaps = 21/233 (9%) Query: 12 MSIFLFSSNPS----VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I + P+ + + + + +I I+ +++ +GLNK +++ +P D Sbjct: 18 LAISVTGMAPASFGPLLTVDEARADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE L Sbjct: 78 DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182 RRFI DS I VE+VSD +VL G VRT QD+ +A +L++ FL ++S Sbjct: 138 RRFIPDSAINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 197 Query: 183 ------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + ++ SS Sbjct: 198 AVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSS 250 >gi|78049214|ref|YP_365389.1| type II secretory pathway component [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037644|emb|CAJ25389.1| type II secretory pathway component [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 759 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 74/317 (23%), Positives = 126/317 (39%), Gaps = 34/317 (10%) Query: 149 GMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + ++ET + A SS + V+ L++ QV ++ IAEV Sbjct: 432 GSVTLEVEGDKVGVSAVAETNTLLVRSSAQAWSSIRDVIERLDV-MPMQVHIEAQIAEVT 490 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFS 255 + G + + P + G + G + + + Sbjct: 491 LTGQLEYGVNWYFENAVNAPVNADGTGGAGLPSAAGRGIWGDVSGSVTNNGLAWTFLGKN 550 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTT 309 ++ AL+R T +R L P++ + A+ G + + S +TG +SV Sbjct: 551 AAAIISALDRVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQY 610 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGDMPSYRVRKAD 357 D GV+L P V G + L I EVS P +A R+ Sbjct: 611 IDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTSASTTTVNSAACNVDINTRRVK 670 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + +G TI+LAGL+ D G+P+LSK+P++GALF N++ E+ + TP Sbjct: 671 TEAAVQNGDTIMLAGLIDDSTSDGSAGLPILSKLPVVGALFGRKTQNKDRREVIVLITPS 730 Query: 418 LVKPVAMRDLSRPDDHY 434 +V+ ++ D Y Sbjct: 731 IVR--NPQEARNLTDEY 745 >gi|300113065|ref|YP_003759640.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113] gi|299539002|gb|ADJ27319.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113] Length = 699 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 58/328 (17%), Positives = 108/328 (32%), Gaps = 46/328 (14%) Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 L I + T+ A L+ + +K Sbjct: 390 ASNLAALIQSEENSLLSARGHATFDERTNTLLVMDTADRLA---------------ALRK 434 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ L+I QV ++ + D +++G + ++ G Sbjct: 435 LVASLDIPVR-QVLIESRVVIASSDFSRELGVRFGLSKQDKVGGAFDQVTTSGSLNGTTQ 493 Query: 244 DFSV--------------KGVLDRFSFETVLHAL-------------ERATAIRTLAEPT 276 + D L L + ++ P Sbjct: 494 IINQETLELQDRLNVNFPVTKKDAAKIALALTNLPLGALLELELSALQAEGRGEVISNPR 553 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + + + A G + Y+ SS+GATSV+ + L TP + RI + + V Sbjct: 554 VITSNQKEAIIEQGTEIPYQRA-SSSGATSVSFKKAVLSLKVTPQITPDDRIIMDLG--V 610 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 ++ +G +PS R+ T V + +G T+VL G+ + + + IP L +P G Sbjct: 611 TKDSVGKVFAGVPSINTREVSTQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDLPYAGI 670 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAM 424 LFR+ + E+ I TP ++K A Sbjct: 671 LFRDKTEFNNKRELLIFVTPKIIKEGAR 698 >gi|282856386|ref|ZP_06265665.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter piscolens W5455] gi|282585757|gb|EFB91046.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter piscolens W5455] Length = 566 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 108/331 (32%), Gaps = 51/331 (15%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 ++ L+ + + V+ + +V+ G + +R + L + Sbjct: 252 EAQKTAPLLKELAELHSPANRVLVDERQNLIVVTGTAFQQEKVRRTLRLLDA-------- 303 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 QV LK I EV D Q+ + S A Sbjct: 304 -----------------PGRQVMLKARIIEVNDDASDQLETALNAVYDWWWGSYQNGALS 346 Query: 235 GGKFVSE-----------------------GGDFSVKGVLDRFSFETVLHALERATAIRT 271 G S G + L L R Sbjct: 347 AGFAQSGRKPGTAEGALGNLDTSANLPGEIGSGIVQLAGTATRMLDFRLRTLVEQKKARV 406 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA+PT+T + G+ A+ + Y + + + G L TP + G I + Sbjct: 407 LADPTVTVLDGEKATVKLVEKLKYVSRRDDAQNPTYDDEEVGPKLEVTPRIGRSGMITVS 466 Query: 332 IQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + EV + + G +P R +T + + G V+ GL K+ + + +P+L Sbjct: 467 VSLATGEVIQWIRGGQGEQIPQTNSRTVETKIRVRDGEPFVIGGLFKESRSRTRASVPIL 526 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 S IP++G LF+ + +++ + P+++ Sbjct: 527 SSIPLIGELFKAKLDKKTRSQVVMILIPYIL 557 >gi|171319027|ref|ZP_02908154.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] gi|171095782|gb|EDT40735.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] Length = 633 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 60/297 (20%), Positives = 115/297 (38%), Gaps = 14/297 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------GPSKSFAADF 234 + V+ L++ + V ++ I +V+ LK+IGF ++ GS G Sbjct: 317 EDVVRDLDV-EPELVQIEAAIIDVQDGALKEIGFDWALQGSQFRIASTTSGAGIGRDLGN 375 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + G +FS+ G SF + +HAL+ L+ P L ++G A T+ Sbjct: 376 ADRVRGNGPNFSIFGGSSALSFLSRIHALQTEGKASVLSRPKLATLNGIEAVLTNQQVFY 435 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTP--TVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSY 351 + S+ + D G+ + P S G+ +R+Q + + +G +P Sbjct: 436 PRV--SNERVAQLYQVDVGLQMRVVPAVVRRSDGKADIRLQVFIEDGSLGSQRVDGLPVT 493 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T + +G ++++ G ++D + + +PLL IP+LGALFR + E Sbjct: 494 SKSAITTQALVRNGESLLIGGYVRDVNDRGEAKVPLLGDIPLLGALFRFRSTQTDRQERL 553 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 TP L+ D + + R+ + + +A + Sbjct: 554 FLITPKLL-ATHDTDDTDDTPQAIGASHRERKVIERLTEHFASMDAGAPASGTTQEP 609 >gi|54306408|gb|AAV33391.1| type IV pilus biogenesis secretin PilQ [Moraxella catarrhalis 7169] gi|326559645|gb|EGE10059.1| type IV pilus secretin PilQ [Moraxella catarrhalis 7169] gi|326567677|gb|EGE17783.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC1] gi|326568688|gb|EGE18759.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC7] Length = 473 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 119/296 (40%), Gaps = 29/296 (9%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + G + + + + + + T + Q AN + ++ ++I +QV ++ I Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241 Query: 207 RDILKQIGFQHSITGSS---------------------SGPSKSFAADFGGKFVSEGGDF 245 + +++G G + +G ++ + + G Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMWQEGVAAGGHQNSHLNVDLGVDNAMGRI 301 Query: 246 SVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + L + L A++ ++ P + Q+A +SG Q Y+ + S + Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T + ++L TP + G+IGL++ + PV + + +T V + Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+ Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473 >gi|224437102|ref|ZP_03658083.1| hypothetical protein HcinC1_04000 [Helicobacter cinaedi CCUG 18818] Length = 602 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 48/295 (16%), Positives = 106/295 (35%), Gaps = 18/295 (6%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 +++ + + L + + LN + QV + V I ++ Sbjct: 215 TTSELKNKKDIIINKAAGLLTITATPKQIKRVESYLATLNNKIQKQVLIDVYIFNIQHSN 274 Query: 210 LKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + G + G+ + GDF++ S ++ L+ Sbjct: 275 NQTYGIDWNEFYKLGNLLTLPPNAEGSNNALTGVNNGDFAISIFSQGVSINRIVEFLQTY 334 Query: 267 TAIRTLAEPTLTAISGQSASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVL 316 +++++ P + ++ Q A + G Q + S + + + G++L Sbjct: 335 GKVQSVSNPKVLTLNNQPAIISVGSVLRYFQNTTYQTTTQGTSIQNLSQTFPSVFAGILL 394 Query: 317 HFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 TP+V + I + ++S P+ ++ + V++ G IVL Sbjct: 395 DVTPSVKNDKIILKINPSITKTKDISIENQTTALESPPNLSTKQLSSLVQVKDGEKIVLG 454 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ Q+ +P+L IP++ LF + +E E+ I +P +V+ A Sbjct: 455 GLIDKTEGQILRKLPILGDIPLIKYLFSYKKNIKETQEMVIIISPHIVRLDAREQ 509 >gi|171321858|ref|ZP_02910757.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] gi|171092856|gb|EDT38111.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] Length = 895 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 72/399 (18%), Positives = 144/399 (36%), Gaps = 51/399 (12%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V T+ ++ +A + + + L D + LR+ I ++ V+ Sbjct: 250 KVLDRHTLLVYPSQPEKA-----RNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVD 304 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + +V+ TIQ + ++V+ L+I + VTL Sbjct: 305 ERVNAIVMRDTPETIQVA------------------------ERVVMGLDIPQSE-VTLD 339 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 V + EV + +G Q+ S + A + + + Sbjct: 340 VQVLEVNMNDSLDLGVQYPGKVQFSALGGAEGAALTLGDLLRMNRDRIGVSSESGGLALA 399 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLH 317 + L++ +TLA P + + + AS G + T +++ G SV+ D G++L Sbjct: 400 IDMLQKRGKTKTLANPKIRVRNLEKASIKIGERVPIVTTTNANGVVTESVSYQDVGLMLK 459 Query: 318 FTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P + + +++ EVS S R A+T + +G T +LAGL+ Sbjct: 460 VEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAYSLGTRNAETLMTAKNGETQILAGLV 519 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 K + G+P +S +P+LG LF ++ + E +EI + TP + + + Sbjct: 520 KRNESDSIAGLPGISGLPVLGRLFGSNSRSNERSEIVLLITPHIERNLD----------- 568 Query: 435 SVEDDAKAFFFNRVNKIYG-----PKEASEVEGQNYKGA 468 F +++ + G++ G Sbjct: 569 LPLSAVTTFLSGTESRVTTEALTLESAQAVPAGRSSDGP 607 >gi|313143572|ref|ZP_07805765.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128603|gb|EFR46220.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 605 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 48/295 (16%), Positives = 106/295 (35%), Gaps = 18/295 (6%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 +++ + + L + + LN + QV + V I ++ Sbjct: 218 TTSELKNKKDIIINKAAGLLTITATPKQIKRVESYLATLNNKIQKQVLIDVYIFNIQHSN 277 Query: 210 LKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + G + G+ + GDF++ S ++ L+ Sbjct: 278 NQTYGIDWNEFYKLGNLLTLPPNAEGSNNALTGVNNGDFAISIFSQGVSINRIVEFLQTY 337 Query: 267 TAIRTLAEPTLTAISGQSASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVL 316 +++++ P + ++ Q A + G Q + S + + + G++L Sbjct: 338 GKVQSVSNPKVLTLNNQPAIISVGSVLRYFQNTTYQTTTQGTSIQNLSQTFPSVFAGILL 397 Query: 317 HFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 TP+V + I + ++S P+ ++ + V++ G IVL Sbjct: 398 DVTPSVKNDKIILKINPSITKTKDISIENQTTALESPPNLSTKQLSSLVQVKDGEKIVLG 457 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ Q+ +P+L IP++ LF + +E E+ I +P +V+ A Sbjct: 458 GLIDKTEGQILRKLPILGDIPLIKYLFSYKKNIKETQEMVIIISPHIVRLDAREQ 512 >gi|32471402|ref|NP_864395.1| protein transporter [Rhodopirellula baltica SH 1] gi|32443243|emb|CAD72074.1| conserved hypothetical protein-putative protein transporter [Rhodopirellula baltica SH 1] Length = 521 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 88/241 (36%), Gaps = 12/241 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L+ I V D Q G G + + G E + + Sbjct: 272 PQVVLEAIICVVSPDSGFQFGLDWQHAVEMDGVKELSLSASGLALNGELSQAGLDAIFSD 331 Query: 254 F-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-------AT 305 F + + L + A P + A G+ A+ + + + Sbjct: 332 FGNTSAFVRLLSEKGYLTIRATPHVMAKDGEQANIAINRETFFSVQPPGSTGNNSVFFQQ 391 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVE 361 ++ D G++L TP + + EVSE ++ P R TTV Sbjct: 392 NIQKVDAGIMLDITPHIRGDEVTIDIEKAEVSEDVRNATPALSINQYPIINRRSVSTTVS 451 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G TIV+ GL++ + IP LS++P +G LF+ ++ + E+ I +P +V+ Sbjct: 452 VKDGKTIVIGGLVQRETVDRVNRIPGLSRLPGVGYLFQTTQRQTRDAEVVIFISPRIVRS 511 Query: 422 V 422 Sbjct: 512 T 512 >gi|285019414|ref|YP_003377125.1| general secretion pathway protein d [Xanthomonas albilineans GPE PC73] gi|283474632|emb|CBA17131.1| probable general secretion pathway protein d [Xanthomonas albilineans] Length = 772 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 75/323 (23%), Positives = 120/323 (37%), Gaps = 40/323 (12%) Query: 149 GMVRTIQDSQRAVELS--ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + ET A S + V+ L++ QV ++ +AEV Sbjct: 437 GSVTLEVQGDKVGVAAVEETNTLLVRSTPQAWRSIRDVVEKLDV-MPMQVHIEAQVAEVS 495 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKG 249 Q G S + + AA+ G G G V Sbjct: 496 LTGDLQYGVNWFFENSVNASTDGSAANGTGIGRGAGLPSAAGRKIWGDIAGKIGSDGVGW 555 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ 303 + V+ AL++ T ++ L P++ + A+ G + + S +TG Sbjct: 556 TFLGRNAAAVITALDKVTNLKLLQTPSVFVRNNAEATLNVGTRIPINSTSINTGIGIDSS 615 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------------IGVNAGDMPSY 351 +SV D GV+L P V G + L I EVS P + + Sbjct: 616 YSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPSARPAACTAGTTNVVNTSACNVDI 675 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ T + SG TI+LAGL+ D G+P LSK+P++GALF + E+ Sbjct: 676 NTRRVKTEAAVQSGDTIMLAGLINDSTVDSSLGVPFLSKMPVIGALFGQKGQQKNRNEVI 735 Query: 412 IAATPFLVKPVAMRDLSRPDDHY 434 + TP +V+ ++ D Y Sbjct: 736 VLLTPTIVR--DPQEARNLTDEY 756 >gi|226939985|ref|YP_002795058.1| type II and III secretion system protein [Laribacter hongkongensis HLHK9] gi|226714911|gb|ACO74049.1| type II and III secretion system protein [Laribacter hongkongensis HLHK9] Length = 616 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 75/363 (20%), Positives = 128/363 (35%), Gaps = 72/363 (19%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 N+ V + +V+ G QR + +++L+Q Sbjct: 266 PVRNVMVNPETGVLVVRGT-------QRQQKQVQSYLAQVRNASL--------------- 303 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV ++ TIAEV Q G S G + G + G G + Sbjct: 304 --RQVMIEATIAEVELTRDYQAGVDWSRIGDGKNWQFASNFSGNGLSQNAGNPAQYFGTV 361 Query: 252 D----------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 S + LE R L+ P L A++ QSA Y Sbjct: 362 GQVLQGSTTPAFTGLYRSGSLSAAIRLLEGFGRTRVLSSPKLMALNNQSAILKVVDNVPY 421 Query: 296 ------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 ++T + + + G+V++ TP + GR+ L ++ ++ Sbjct: 422 FTLKIKYEPGTTTNPPTTTYESELHSVPVGIVMNITPQIAPDGRVSLNVRPTITNITGFQ 481 Query: 344 -----------------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 G +P +VR+ ++T+ L SG VL GL++D I + GIP Sbjct: 482 RDPAVQLVLADKGASDPGLGLVPQLQVRELESTLRLQSGEIGVLGGLIQDKIDKDSNGIP 541 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 LLS++P++GALF + + +TE+ + P LV + L+ F Sbjct: 542 LLSQLPVVGALFGLRKESARKTELVVFLKPTLV---SQPSLTTDLSALRNALPDSRFLDG 598 Query: 447 RVN 449 R + Sbjct: 599 RQD 601 >gi|326575064|gb|EGE24993.1| type IV pilus secretin PilQ [Moraxella catarrhalis O35E] Length = 473 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 29/296 (9%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + G + + + + + + T + Q AN + ++ ++I +QV ++ I Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241 Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGG----------------DFS 246 + +++G G + G S+ + V+ GG Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAMGRI 301 Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 G+L+ + L A++ ++ P + Q+A +SG Q Y+ + S + Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T + ++L TP + G+IGL++ + PV + + +T V + Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+ Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473 >gi|254522160|ref|ZP_05134215.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14] gi|219719751|gb|EED38276.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14] Length = 733 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 23/260 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----------A 231 +V+ L++ QV ++ +AEV + G + G + Sbjct: 446 EVIEKLDV-MPLQVHIEAQVAEVALTGDLKYGVNWFFDNAVLGQKLTGALGGVTLPAAAG 504 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + + G + + V+ AL++ T +R L P++ + A+ G Sbjct: 505 GSWSSFAGAVTGADGLGWAFTGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGD 564 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------ 340 + T ++ +SV D GV+L P V G + L I EVS Sbjct: 565 KVPINTTTVNTGVGTSSYSSVQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASDVPETC 624 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 P +K T + SG TI+LAGL+ D GIP LSKIP++GALF Sbjct: 625 NPTERNCNPRISTKKLSTEAAVQSGDTIMLAGLITDSATDGSSGIPGLSKIPVVGALFGQ 684 Query: 401 SRFNREETEIFIAATPFLVK 420 +E+ + TP +V+ Sbjct: 685 KTRTSRRSEVIVLLTPTIVR 704 >gi|294666182|ref|ZP_06731437.1| type II secretory pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604047|gb|EFF47443.1| type II secretory pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 668 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 73/413 (17%), Positives = 145/413 (35%), Gaps = 44/413 (10%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 DP VV + + + G +V+ L +Q+L + + E + Sbjct: 212 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQD 271 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + + V + + V + + + V+ L++ Sbjct: 272 TRTNAVDVAAATGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 331 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246 +QV ++ + E+ K++G Q + G + ++ A G ++ + Sbjct: 332 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGT 390 Query: 247 VKGV-------------------------------LDRFSFETVLHALERATAIRTLAEP 275 G + F ++ A++ T L+ P Sbjct: 391 RSGNAEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 450 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ + + A G + T + ++ D GV L P + + G I L Sbjct: 451 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 510 Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I+ EVS V+A + R+ +T V + +G + L GLL + +Q E +PLL Sbjct: 511 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 570 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +P LGALFR+ NR++T + + P +++ A Y+ D + Sbjct: 571 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRD-AADAQRMTAPRYNDLRDRQL 622 >gi|317407766|gb|EFV87693.1| hypothetical protein HMPREF0005_03214 [Achromobacter xylosoxidans C54] Length = 675 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 50/293 (17%), Positives = 90/293 (30%), Gaps = 31/293 (10%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF----SVKGVL 251 V ++ I +V + + ++G + S A + G+ Sbjct: 308 VEIEAMIVDVNSEAISELGVNWGVNVGRSSIGYGDLALKPSGGLPVDSAAKLSPGTLGLS 367 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 S + AL+ A L++P++ A +VT Sbjct: 368 LGTSLAARVRALQSRGAANILSQPSILTADNLGAMIDLSETFYI--SLRGERVATVTPVT 425 Query: 312 YGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 G L TP + G++ L + E V +P+ R T + T+ Sbjct: 426 VGTSLRVTPRYIAAAQGGQVELTVDIEDGSVQSEVEIDGLPTVRKSNISTLAVVGDQQTL 485 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-------- 420 ++ G + + +PLL IP+LG LF + + E P LV Sbjct: 486 LIGGYNSSQNTEQVDKVPLLGDIPLLGTLFSSKSKTVQRRERLFLIRPRLVSINGVSVAA 545 Query: 421 ---------PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 P ++ P D A+ + +I G V+G+ Sbjct: 546 PANIVTASNPSFGVAVAAPWDEKPAASAAQF-----LERIQGGSGLRAVDGRR 593 >gi|9885640|gb|AAG01463.1|AF282857_12 hrcC gene product [Pantoea stewartii subsp. stewartii] Length = 677 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 71/468 (15%), Positives = 139/468 (29%), Gaps = 31/468 (6%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73 L + + + V+ + G + +S+ Q D + V+ Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPRYLSLVKRFSEQRQKKEDRRKVMTFPL 183 Query: 74 --PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRR 129 + AD +H + G A ++ L+ ++ + + Sbjct: 184 KYASVADRTIHYRDQTLVI---PGVATMLNELMNGKRAAPVSASGAEGTIGGADNAAMMQ 240 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 R+ ++ G + +S + + + + ++ L+N Sbjct: 241 NTQSLLARLSNHANNTNRPGDRDNNSVDDLSGRISADVRNNALLIRDDDKRREEYAQLIN 300 Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 Q V + I ++ R L ++ T S + G FVS Sbjct: 301 KIDIPQNLVEIDAVIIDIDRTALNRLEANWQATLGGVTGGTSLMSGSGTLFVS------- 353 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 D F + ALE +A P++ + Q A + Sbjct: 354 ----DFKRFFADIKALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 407 Query: 308 TTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365 G L TP + +++ ++ + + N + R T + Sbjct: 408 QPVTAGTSLQVTPRAVGHQDHASIQLVIDIEDGHVETNNDGQATGVKRGTVSTQALISEN 467 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL G ++ + IPLL IP LG LF ++R + E TP L+ Sbjct: 468 RALVLGGFHVEESGERDRRIPLLGDIPWLGRLFTSTRHEISQRERLFILTPRLIGDQTDP 527 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIY--GPKEASEVEGQNYKGAIGF 471 D+ DA A R + + E + + + GF Sbjct: 528 TRYVSADNRQQLSDAMARVERRHSNVNLQDMVENALRDLAERQTPAGF 575 >gi|294625731|ref|ZP_06704351.1| general secretion pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599967|gb|EFF44084.1| general secretion pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 763 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 70/301 (23%), Positives = 117/301 (38%), Gaps = 29/301 (9%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ET A SS + V+ L++ QV ++ +AEV Q G Sbjct: 449 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGELQYGVNWYF 507 Query: 220 TGSSSGPSKSFAADFG--------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 + + + + A G + V + V+ AL+ T +R Sbjct: 508 ENAVNAATAAGGAGLPSAAGRSIWGDISGTVTNGGVGWTFLGKNAAAVISALDTVTNLRL 567 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSP 325 L P++ + A+ G + + S +TG +SV D GV+L P V Sbjct: 568 LQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKD 627 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVLAGL 373 G + L I E+S P A + R+ T + SG T++LAGL Sbjct: 628 GMVFLDIVQEISTPGARPQACTAAATTTVNSAACNVDINTRRVKTEAAVQSGDTMMLAGL 687 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 + D + G+P LSK+P++GALF + E+ + TP +V+ ++ D Sbjct: 688 IDDSTTDISAGVPFLSKLPVVGALFGQKNKDTNRREVIVLITPTIVR--NPQEARNLTDE 745 Query: 434 Y 434 Y Sbjct: 746 Y 746 >gi|262273424|ref|ZP_06051238.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP 101886] gi|262222402|gb|EEY73713.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP 101886] Length = 578 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 70/424 (16%), Positives = 142/424 (33%), Gaps = 45/424 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV--LVSDPTKADVVVHSPRT--- 86 + + + ++ ++ + + + + DV + T +V R Sbjct: 160 FQDIPVRSVLQMVAEHNGFNLVVSDTVQGSLTLRLDDVPWQKALDTILNVKGLDKRQTGN 219 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 + L I + + +L + ++ A++ EM+ + Sbjct: 220 ILLVAPK------IELDEQERLVLEKRRQARELASLRSEVIQIKYANAVDLKEMLGGSDA 273 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G + + + T K +++ L+I DQV ++ I V Sbjct: 274 EEGGISLLSERGSIAVDPRTNSLVIKDLSDNIEVVKSLIDSLDIP-VDQVEIEARIVTVD 332 Query: 207 RDILKQIGFQHSITGSSSGPSKS-----------------------------FAADFGGK 237 L +IG + + + + + G Sbjct: 333 EGTLDEIGVRWGLNSQNGNFTMGGSIEGNWQHSDRIDVGADNEPDELMLDDLLNVNLGAI 392 Query: 238 FVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + FSV + + L AL+ + ++ P L + + A G + Y Sbjct: 393 SPNATSIAFSVANLGKDLLLDLELSALQAESRAEIISSPRLLTTNKRPAYIEQGTELPYL 452 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVR 354 SSS A + + L TP + ++ L +Q +P V G+ + + Sbjct: 453 EASSSGAAAV-SFKKAVLSLSVTPQITPDNKLVLDLQVTQDKPAGTVKAGTGEAMAINTQ 511 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + T V + G T+VL G+ + ++ + + IPLL IP LG LFR + + E+ I Sbjct: 512 RIGTQVLVNDGETVVLGGIYQHEMMEGVDKIPLLGDIPGLGQLFRRNYETTGKRELLIFV 571 Query: 415 TPFL 418 TP + Sbjct: 572 TPRV 575 >gi|269797724|ref|YP_003311624.1| type II and III secretion system protein [Veillonella parvula DSM 2008] gi|269094353|gb|ACZ24344.1| type II and III secretion system protein [Veillonella parvula DSM 2008] Length = 432 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 9/275 (3%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L +V T+ + + LSE + ++ ++ QV L+ TI + Sbjct: 165 LKNVVGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLVCAID-KEPKQVQLEATIIAME 223 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + K+ GF+ S D + + + G +F + L +E + Sbjct: 224 QSYAKEQGFRWS-----WLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPELSLMESS 278 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324 +A+P++ A++G++A G + S G + G+ L++TP + + Sbjct: 279 GKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 338 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + +I EVS P I V+ R+A T V L G +V+ GL+ + Q + Sbjct: 339 DGGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 397 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+L IP+LG LFR+SR ++ E+ + +V Sbjct: 398 IPILGDIPLLGKLFRHSRKTKDSIEMLMLVRATVV 432 >gi|307719942|ref|YP_003891082.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] gi|306978035|gb|ADN08070.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] Length = 502 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 23/272 (8%) Query: 169 SQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 S + + NL+ + QV ++ I EV + Q+G + G S Sbjct: 232 SGVLSVYDKKQNIDAISNLIKDVKKQFNKQVLIEAKILEVTLNKSHQLGINWDVVGKSVF 291 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 ++ +V + +F +++A+++ I T++ P + ++GQSA Sbjct: 292 SPGDTLNIQQSLGLTGAVAGTVNYSAN--NFNALINAIDQNGNIDTISNPRIKVLNGQSA 349 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDY----------GVVLHFTPTVLSPGRIGLRIQTE 335 +SG Y T + T + GV + TPTV+ GRI L + Sbjct: 350 IISSGKLVPYWEKQVDTSQGTSTNNILVTYNRRDVLDGVTMGVTPTVMENGRIMLNVTPI 409 Query: 336 VSEP--------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 S GV+ P +++A T + + +++ GL+ I++ K+ +P Sbjct: 410 SSSIESEKVYHDDQGVSVATAPIINIKEAGTIIYAKNNDLVLIGGLMSTSIKKNKQEVPF 469 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 LS +P++G+LF +E+ E+ I ++ Sbjct: 470 LSNLPLVGSLFTQVNNTKEKKELVILLRLKVI 501 >gi|313892802|ref|ZP_07826383.1| bacterial type II and III secretion system protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442733|gb|EFR61144.1| bacterial type II and III secretion system protein [Veillonella sp. oral taxon 158 str. F0412] Length = 429 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 62/275 (22%), Positives = 117/275 (42%), Gaps = 9/275 (3%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L ++ T+ + + LSE + ++ ++ QV L+ TI + Sbjct: 162 LKAVMGTVVKNDKMAVLSEQNEVIMHLTNGEKRRVENLVRAID-KEPKQVQLEATIIAME 220 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + K+ GF+ S D + + + G +F + L +E + Sbjct: 221 QSYAKEQGFRWS-----WLSLTGHGDDKTNSYGAVTFGKTPSGEAYKFFVKPELSLMESS 275 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324 +A+P++ A++G++A G + S G + G+ L++TP + + Sbjct: 276 GKAVLIAKPSIMALNGETAHILIGERIPVVEESEVNGERKRSTRYEEVGIKLNYTPIITA 335 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + +I EVS P I V+ R+A T V L G +V+ GL+ + Q + Sbjct: 336 DGGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQQGEVLVIGGLMDNRDQHQIQK 394 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+L IP+LG LFR+SR ++ E+ + +V Sbjct: 395 VPILGDIPLLGKLFRHSRKTKDSIEMLVLVRATVV 429 >gi|294793490|ref|ZP_06758627.1| bacterial type II and III secretion system protein [Veillonella sp. 3_1_44] gi|294455060|gb|EFG23432.1| bacterial type II and III secretion system protein [Veillonella sp. 3_1_44] Length = 412 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 116/275 (42%), Gaps = 9/275 (3%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L +V T+ + + LSE + ++ ++ QV L+ TI + Sbjct: 145 LKNVVGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLVRAID-KEPKQVQLEATIIAME 203 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + K+ GF+ S D + + + G +F + L +E + Sbjct: 204 QSYAKEQGFRWS-----WLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPELSLMESS 258 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324 +A+P++ A++G++A G + S G + G+ L++TP + + Sbjct: 259 GKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 318 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + +I EVS P I V+ R+A T V L G +V+ GL+ + Q + Sbjct: 319 DDGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 377 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+L IP+LG LFR+SR ++ E+ + +V Sbjct: 378 IPILGDIPLLGKLFRHSRKTKDSIEMLMLVRATVV 412 >gi|294638088|ref|ZP_06716347.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685] gi|291088796|gb|EFE21357.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685] Length = 400 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 80/420 (19%), Positives = 151/420 (35%), Gaps = 34/420 (8%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK-----VIILQVP 63 + ++ + L + + + P + A + + + +++ L+ + V Sbjct: 3 WRLLVLLLLACSARARETPLTVWFDHAPLRTVLQAVAEFAGLNLILSDELNIAATVHIVQ 62 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG--KQMLNLDILIERDIA 121 +L + D+ V + + L +L D Sbjct: 63 TPWPQLLDALAEMYDLSVVTRDGILLVQSRERAQRRAPPAARPAAHLRSQRLVLHHADAL 122 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 +E +LR+ D + + G V V T +S Sbjct: 123 TVEKSLRQR-----------RDLLGVGGSV---------VADVRTNALLLRTETTRLASV 162 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ Q+ L I + ++ L+++G + +S G + + F + Sbjct: 163 AEWVTQLDVPLP-QIQLAAHIVSMSQEGLRELGIRWRNGTASEGEHEVRRREDEAYFSAG 221 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + + L ALER + +A P L A GQ AS G + Y + Sbjct: 222 ----IQVAHIGGQALAMTLAALERQDKVAIIASPQLMAAHGQMASIKQGSELPYAVSNGE 277 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTT 359 G +++ + + + TP VL+ RI L +Q + P + + + ++ T Sbjct: 278 RGVSTMEFKEAVLGMSVTPRVLADERIELALQITQNMPGRLVRQGDSEALAIDKQEISTQ 337 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V LP+G T VL G+ + Q EG P L+ IP+LG L R E E+ I TP L+ Sbjct: 338 VTLPNGDTAVLGGIFQYQRQDGYEGFPWLASIPLLGHLLRRDSQRSERRELVIFITPTLL 397 >gi|289663703|ref|ZP_06485284.1| general secretion pathway protein D [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 768 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 69/308 (22%), Positives = 112/308 (36%), Gaps = 36/308 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ET A SS + V+ L++ QV ++ +AEV G Sbjct: 447 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGDLSYGVNWYF 505 Query: 220 TGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVLD------------RFSFETVLHAL 263 S + + G S G + + +++AL Sbjct: 506 ENSVNAAADSATNGTGIGVGAGLASAAGRNIWGDIAGKVGEGGLAWSFLGKNAAAIINAL 565 Query: 264 ERATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVVLH 317 ++ T +R L P++ + A+ + + S + +SV D GV+L Sbjct: 566 DKVTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVILK 625 Query: 318 FTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSGG 366 P V G + L I EVS P A R+ T + SG Sbjct: 626 VRPRVTKDGMVFLDIVQEVSSPGDRPTACQSATATINAAACNVDINTRRVKTEAAVQSGD 685 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 TI+LAGL+ D G+P LSK+P++GALF N E+ + TP +V+ ++ Sbjct: 686 TIMLAGLINDSTTDGSNGVPFLSKLPVVGALFGTKSRNSSRREVIVLITPSIVR--NPQE 743 Query: 427 LSRPDDHY 434 D Y Sbjct: 744 ARNLTDEY 751 >gi|15805800|ref|NP_294498.1| general secretion pathway protein D [Deinococcus radiodurans R1] gi|6458483|gb|AAF10350.1|AE001932_2 general secretion pathway protein D, putative [Deinococcus radiodurans R1] Length = 740 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 76/427 (17%), Positives = 154/427 (36%), Gaps = 41/427 (9%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L ++ ++ P+ + V+N + ++ + +++ + VQ V Sbjct: 334 ALLAAQYPTLRVTPVGQTGQLVLNGAQAQLDTALALLEQVDRPAPVAESRTVQRVF---- 389 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + + + G L +L + D + + ++ Sbjct: 390 -----QLVNASAEEVKATLEGTLARDLTADSNNDVLPNVPVTATDANGNTTVVS--VPNA 442 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS---GRNQYANSSSKKVMNLLNIA 191 + +T ++Q+A +++ + G + ++ V L + Sbjct: 443 LGKTANQGTANAQAQTAQTPANTQQATLIADKRTNSLIVRGTPEQVAQVAELVPQLDQV- 501 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 Q+ ++V I EV L+ +G T + S F Sbjct: 502 -VPQINVQVRIQEVNERALQSLGLNWRATFGGFNVAVSGGTGLAATFNPTQSFL------ 554 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQS--------------ASFTSGGQHLYKT 297 F+ L ALE R + + +T SGQ A+ + + Sbjct: 555 -GFNIFPTLTALETQGLTRRVYDGNVTMQSGQRSLSATGGAQNASSGAAASVKSGGRLEI 613 Query: 298 VSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRV 353 S V DYG+ L F +P V G I LRI+ +V++P + A +P+ + Sbjct: 614 NIPSAAGNIVRQIDYGLNLDFFSPQVAPDGTITLRIRGQVNQPATAITADSLPNLIDFTN 673 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 +A +T+ +G TI+++GLL + G+P LS +P +GA F R + ++++ + Sbjct: 674 SEAQSTITFKNGQTILMSGLLGSTETTNRSGVPFLSSLPGVGAAFGEKRTEKTQSQLLVI 733 Query: 414 ATPFLVK 420 T +VK Sbjct: 734 ITGTVVK 740 >gi|21244259|ref|NP_643841.1| general secretion pathway protein D [Xanthomonas axonopodis pv. citri str. 306] gi|21109904|gb|AAM38377.1| general secretion pathway protein D [Xanthomonas axonopodis pv. citri str. 306] Length = 763 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 118/305 (38%), Gaps = 32/305 (10%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ET A SS + V+ L++ QV ++ +AEV G Sbjct: 448 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGALSYGVNWYF 506 Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268 + + P + + + G D V + ++ AL+ + Sbjct: 507 ENAVTTPFNADGSGGPALPSAAGRNIWGDIAGRVTDGGVAWTFLGKNAAAIISALDTVSN 566 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322 +R L P++ + A+ G + + S +TG +SV D GV+L P V Sbjct: 567 VRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSYSSVQYIDTGVILKVRPRV 626 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370 G + L I E+S P A + R+ T + SG T++L Sbjct: 627 TKDGMVFLDIVQEISTPGARPAACTAATTTTVNSAACNVDINTRRVKTEAAVQSGDTMML 686 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGL+ D G+P LSK+PI+GALF N + E+ + TP +V+ ++ Sbjct: 687 AGLIDDSTTNGSVGVPFLSKLPIVGALFGRKTQNTDRREVIVLITPSIVR--NPKESRDL 744 Query: 431 DDHYS 435 D Y+ Sbjct: 745 TDEYA 749 >gi|9625382|ref|NP_039614.1| gene IV product [Enterobacteria phage I2-2] gi|138048|sp|P15420|G4P_BPI22 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|14922|emb|CAA32520.1| gene IV product [Enterobacteria phage I2-2] Length = 428 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 81/450 (18%), Positives = 157/450 (34%), Gaps = 54/450 (12%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 +TFF + LF+ A P+ N+ V + K K +I+ P Sbjct: 1 MKTFFAKFIVALFAFTYFSAFAEPVTLNNSPVRSFVQWYSSKT-------GKSVIVN-PD 52 Query: 65 DVQDVLVSDPTKADV-------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 ++ V + + V + + + N + L + E Sbjct: 53 VKGNITVFNADVNNANIDDFFKSVLNANGLVVVAGNPAVVSTPLTKLASQPSNEETYDDE 112 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D E + + + + V T S + L++ F+ N Sbjct: 113 SDGVAYEAVPQSAAPAVPADLTVRNFNV-------TRVRSSDVLPLAKIFVDS---NGGG 162 Query: 178 NSSSKKVMNLLNIAGEDQVT------------------LKVTIAEVRRDILKQIGFQHSI 219 N N L ++G QV ++ + E + F ++ Sbjct: 163 NVVDYPGNNSLVVSGSAQVMPALSDFITSIDVAREQVLIQSLMFETSVSNGVDLSFALAL 222 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G + GG F G+ + L A++ + + ++ P + Sbjct: 223 ASGGKVAGGFNTSALGTALSTAGGSF---GIFNGNILALSLQAVQSDSNSKVISTPRILT 279 Query: 280 ISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 SGQS + G + T + ++ D GV L TP V+ G++ L I Sbjct: 280 QSGQSGYISVGQNVPFVTGKVTGEAASVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTI 339 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 T+ A D+ R+ TTV++ G T++L GL+ + +P +SKIP Sbjct: 340 DTKADSLSNQAIASDI-ITNQRQIQTTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIP 398 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPV 422 ++G LFR+ ++++ +F+ T +++ + Sbjct: 399 LIGWLFRSHSDSKDDRTMFVLLTAHVIRAL 428 >gi|326562497|gb|EGE12814.1| type IV pilus secretin PilQ [Moraxella catarrhalis 103P14B1] gi|326572679|gb|EGE22668.1| type IV pilus secretin PilQ [Moraxella catarrhalis CO72] gi|326574278|gb|EGE24226.1| type IV pilus secretin PilQ [Moraxella catarrhalis 101P30B1] Length = 473 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 29/296 (9%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + G + + + + + + T + Q AN + ++ ++I +QV ++ I Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241 Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGG----------------DFS 246 + +++G G + G S+ + V+ GG Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWAMRQEGVAAGGHQNSHLNVDLGVDNAMGRI 301 Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 G+L+ + L A++ ++ P + Q+A +SG Q Y+ + S + Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T + ++L TP + G+IGL++ + PV + + +T V + Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+ Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473 >gi|32266614|ref|NP_860646.1| hypothetical protein HH1115 [Helicobacter hepaticus ATCC 51449] gi|32262665|gb|AAP77712.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 533 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 104/268 (38%), Gaps = 20/268 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKF 238 ++ + LN + QV + V I V+ + G + G+ G Sbjct: 241 ERYIAQLNDKIQKQVLIDVHILNVQHTDNQTYGIDWNEFYKLGNIMTLPAEHQNTSSGSI 300 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 S GG F++ + ++ L+ +++++ P + ++ Q A + G Y Sbjct: 301 DSSGGRFAINIFSQGVNINRIVEFLQTYGKVQSISNPKVLTLNNQPAIISVGSVLRYSQN 360 Query: 299 SS----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT------EVSEPVIG 342 ++ + + + G++L TP+ + G+I L+I ++S Sbjct: 361 TTYQTTTQGTSVQNNSQAFPSVFAGILLDVTPS-IKDGKIILKINPSITKTKDISIENQT 419 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + P+ ++ + V+L G IVL GL+ Q IP+L IP + F + Sbjct: 420 IALNAPPNLSTKQLSSLVQLKDGEQIVLGGLIDKTEGQTTRKIPILGDIPFVKYFFSYKQ 479 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430 +E E+ I P +V+ A + P Sbjct: 480 NIKETQEMVIIIAPHIVRLDANETAASP 507 >gi|310923243|emb|CBW54709.1| YscC, T3SS outer membrane ring component, local similarity to E.coli GspD (T2SS) and to iron transporters,PMID 9427408 [Yersinia enterocolitica (type O:8)] Length = 607 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 113/324 (34%), Gaps = 20/324 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 E + L+R ++D+ I+ V + + Q + RA + S Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQARVEADPSLNAII 257 Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S +++ L++ + ++V +I ++ D L ++G + + + Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317 Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G S G S+ ++ LE + + ++ PTL A Sbjct: 318 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAG 346 + K + YG +L TP VL+ G I L + E + Sbjct: 378 SETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435 Query: 347 -DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ DT + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 436 EGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495 Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429 T P ++ L+ Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519 >gi|222099578|ref|YP_002534146.1| ComE protein [Thermotoga neapolitana DSM 4359] gi|221571968|gb|ACM22780.1| ComE protein [Thermotoga neapolitana DSM 4359] Length = 1282 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 67/346 (19%), Positives = 131/346 (37%), Gaps = 37/346 (10%) Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFIADSNIR 137 + + S YLF G V ++ + + I + ++ + + Sbjct: 971 LDLVSQNYGYLFDLKNG---VYVVSRPKQDLAKRYFYDIPHNFDQIKALIE--FYGGTVY 1025 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V+ +++ +V+ G+ TI +++ L QV Sbjct: 1026 VDSLNNFMVVTGISETI-----------------------KKELDRIVENLK-KPTKQVE 1061 Query: 198 LKVTIAEVRRDI--LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + I + K++G Q S TG S + + ++ + + Sbjct: 1062 ISAKIVDKSLIDMVTKEMGLQLSGTGVDLSSSGASISFSVTDYLDFEKVIN---EILNSP 1118 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + T LA P + SG+ A G + Y T ++ G V + G+ Sbjct: 1119 LSLQFSDQKSNTLDDILASPRIVTTSGKEAKILIGDRIPYVTDTNGDGTPEVQFLETGIE 1178 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP V S I L + + SEP +N ++P R R+A T + + + TIV+ GL++ Sbjct: 1179 LSITPFVRSDDTIELDLFVKASEPGNYIN--EVPGERTREATTHLIVKNNSTIVIGGLIR 1236 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +P +P++G FR ++E+ ++ I T +V+P Sbjct: 1237 EVTNMSESKLPFFGDLPVIGQFFRTKSESKEKRDLMIFVTVRVVEP 1282 >gi|240141999|ref|YP_002966509.1| putative General secretion protein D [Methylobacterium extorquens AM1] gi|240011943|gb|ACS43168.1| putative General secretion protein D [Methylobacterium extorquens AM1] Length = 693 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 13/239 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-----EGGDFSV 247 QV ++ TIAEVR + + G + G S + FG S G+ ++ Sbjct: 424 PTQVLIEATIAEVRLNEALRHGVRWYFQAGGLGQGASMGSGFGTSGRSVTGQGSAGEIAL 483 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305 L + + + ALE T + ++ P LT + Q+A+ G Q T S+ + Sbjct: 484 TYSLGLANAKLAISALESVTDVEIVSSPALTVLDNQTATLKVGEQVPIATRSARSVVNAD 543 Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTT 359 + D GV+L TP V + G + L I+ E S+ V + D P+ R+R+ +T Sbjct: 544 APLVNDIEMKDTGVILQVTPRVNAGGLVMLDIKQEASDVVPTTTSNLDSPTIRLRQITST 603 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + SG IVL G+++ + G+P L IP+LG N ++ TE+ I P + Sbjct: 604 IAVKSGAEIVLGGIIQRGRHRGAGGVPFLRDIPLLGTALNNIDSGQDRTELVIIIRPTV 662 >gi|297538460|ref|YP_003674229.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301] gi|297257807|gb|ADI29652.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301] Length = 589 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 67/388 (17%), Positives = 116/388 (29%), Gaps = 56/388 (14%) Query: 88 YLFGKNVGQ--ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD-- 143 Y+ G+ G V R + S+I +D Sbjct: 164 YIVGQRKGSSDTRVTSGSVSDGSSSGQSTGSTTTTNSSGSANRASMISSSIATTTNNDFW 223 Query: 144 ---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 T L+G+V R V ++ + + + + L+ + E QV L+ Sbjct: 224 KDLTDSLNGIVGNENGH-RVVVNVQSGVIMVRAMPAEVRNVEAFLRLMQVTIERQVILEA 282 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSK--------------------------SFAADF 234 I V+ + Q G S+ G S + S Sbjct: 283 KIMNVQLNDQSQSGVNWSVFGKSGSNTGIVGNLNAKTTLGRAGNGDVTSGDLSASSGNVI 342 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + G L +F +L LE ++ L+ P + I+ Q A G Sbjct: 343 ANTATTALGGPLFAVALQGANFAALLSFLETQGDVQVLSSPRIATINNQKAVLKVGTDEF 402 Query: 295 YKTVSSST-----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 + T SS ++ G+ L TP + I L + +S+ Sbjct: 403 FVTGISSNTTASTGATTTSPEVTLQPFFSGIALDVTPQIDKDDNIILHMHPSISQVTTVN 462 Query: 344 NAGDMPSY-----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 ++ V + D+ V G I + GL+ + K +P L I Sbjct: 463 KQLNLGGVSGNINLPLASSNVSETDSIVRTHDGRVIAIGGLMTESSISNKSKVPGLGDIK 522 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420 +G FR +TE+ I +V+ Sbjct: 523 GVGNAFRQKGSTSSKTELVILLKATVVQ 550 >gi|282848997|ref|ZP_06258386.1| bacterial type II and III secretion system protein [Veillonella parvula ATCC 17745] gi|282581272|gb|EFB86666.1| bacterial type II and III secretion system protein [Veillonella parvula ATCC 17745] Length = 440 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 64/275 (23%), Positives = 116/275 (42%), Gaps = 9/275 (3%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L +V T+ + + LSE + ++ ++ QV L+ TI + Sbjct: 173 LKNVVGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLVRAID-KEPKQVQLEATIIAME 231 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + K+ GF+ S D + + + G +F + L +E + Sbjct: 232 QSYAKEQGFRWS-----WLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPELSLMESS 286 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324 +A+P++ AI+G++A G + S G + G+ L++TP + + Sbjct: 287 GKAVLIAKPSIMAINGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 346 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + +I EVS P I V+ R+A T V L G +V+ GL+ + Q + Sbjct: 347 DDGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 405 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+L IP+LG LFR+SR ++ E+ + +V Sbjct: 406 IPILGDIPLLGKLFRHSRKTKDSIEMLMLVRATVV 440 >gi|218294935|ref|ZP_03495789.1| type II and III secretion system protein [Thermus aquaticus Y51MC23] gi|218244843|gb|EED11367.1| type II and III secretion system protein [Thermus aquaticus Y51MC23] Length = 751 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 11/278 (3%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G + V T + + ++ L+ A QV L+V I EV+ + Sbjct: 483 GQSGNPTPTATVVADERTNTLIVTGTAEDLALVEGLIPRLDQAVP-QVNLRVRIQEVQSN 541 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 + + +G + + + + + F S L + L AL+R Sbjct: 542 LTRSLGLKWNTIAGGNVVASILDSGLSLIFDS-------TRSLAALNIVATLDALQRQGL 594 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 R L + T +S Q+A SG L + V + D G+++ TP + + G+I Sbjct: 595 SRALRDVNQTVLSNQTARLQSGETFLIRRVVENRVERV--PFDIGIIVEVTPQITADGQI 652 Query: 329 GLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L I+ EVS V GD+ + + TT+ + G T+VL GL + Q +G+P+ Sbjct: 653 LLNIRAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVRDGQTVVLGGLTSQENTQTVQGVPI 712 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 L IP++G LF+ + E+ + T ++K A R Sbjct: 713 LMDIPLIGELFKQRTGETTDRELLVVITADILKETAER 750 >gi|294627648|ref|ZP_06706230.1| type II secretory pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598000|gb|EFF42155.1| type II secretory pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 668 Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats. Identities = 73/413 (17%), Positives = 145/413 (35%), Gaps = 44/413 (10%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 DP VV + + + G +V+ L +Q+L + + E + Sbjct: 212 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQD 271 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + + V + + V + + + V+ L++ Sbjct: 272 TRTNAVDVAAATGAAQAQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 331 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246 +QV ++ + E+ K++G Q + G + ++ A G ++ + Sbjct: 332 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGT 390 Query: 247 VKGV-------------------------------LDRFSFETVLHALERATAIRTLAEP 275 G + F ++ A++ T L+ P Sbjct: 391 RSGNAEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 450 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ + + A G + T + ++ D GV L P + + G I L Sbjct: 451 SIMTLDNEQARILVGQEVPITTGEVLGAANDNLFRTIQRQDVGVELEVRPQINTAGGITL 510 Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I+ EVS V+A + R+ +T V + +G + L GLL + +Q E +PLL Sbjct: 511 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 570 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +P LGALFR+ NR++T + + P +++ A Y+ D + Sbjct: 571 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRD-AADAQRMTAPRYNDLRDRQL 622 >gi|10955572|ref|NP_052413.1| secretin YscC [Yersinia enterocolitica] gi|332163594|ref|YP_004424936.1| putative type III secretion protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|267564|sp|Q01244|YSCC_YEREN RecName: Full=Yop proteins translocation protein C; Flags: Precursor gi|155552|gb|AAC37020.1| yscC [Yersinia enterocolitica] gi|4324359|gb|AAD16836.1| secretin YscC [Yersinia enterocolitica W22703] gi|318608189|emb|CBY78163.1| type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) [Yersinia enterocolitica subsp. palearctica Y11] gi|325667824|gb|ADZ44467.1| putative type III secretion protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 607 Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats. Identities = 58/324 (17%), Positives = 113/324 (34%), Gaps = 20/324 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 E + L+R ++D+ I+ V + + Q + RA + S Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQARVEADPSLNAII 257 Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S +++ L++ + ++V +I ++ D L ++G + + + Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317 Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G S G S+ ++ LE + + ++ PTL A Sbjct: 318 KTTGDQSNIASNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAG 346 + K + YG +L TP VL+ G I L + E + Sbjct: 378 SETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435 Query: 347 -DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ DT + G ++++ G+ +D++ +PLL IP +GALFR Sbjct: 436 EGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELT 495 Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429 T P ++ L+ Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519 >gi|166713403|ref|ZP_02244610.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzicola BLS256] Length = 766 Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 32/304 (10%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ET + +S + V+ L++ QV ++ +AEV Q G Sbjct: 449 VSAVAETNTLLVRSTPQSWASIRDVIEKLDV-MPMQVHIEAQVAEVNLTGQLQYGVNWYF 507 Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268 + + P + + G + V + ++ AL++ T Sbjct: 508 ENAVTTPFDANDNGGPALPSAAGRNIWGDIAGSVTNTGVGWTFLGKNAAAIISALDQVTN 567 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322 +R L P++ + A+ G + + S +TG +SV D GV+L P V Sbjct: 568 LRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRV 627 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370 G + L I E+S P +A + R+ T + SG TI+L Sbjct: 628 TKDGMVFLDIVQEISTPGARPDACTAATTTTVNSAACNVDINTRRVKTEAAVQSGDTIML 687 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGL+ D G+P+LSK+P++GALF + E+ + TP +V+ ++ Sbjct: 688 AGLIDDSTTDGSSGVPMLSKLPVVGALFGRKTRDTRRREVIVLITPSIVR--NPQEARNL 745 Query: 431 DDHY 434 D Y Sbjct: 746 TDEY 749 >gi|148259896|ref|YP_001234023.1| general secretion pathway protein D [Acidiphilium cryptum JF-5] gi|146401577|gb|ABQ30104.1| general secretion pathway protein D [Acidiphilium cryptum JF-5] Length = 756 Score = 156 bits (395), Expect = 7e-36, Method: Composition-based stats. Identities = 69/305 (22%), Positives = 122/305 (40%), Gaps = 21/305 (6%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + N+S + ++ L+I +V + TIAEV + + G Q S Sbjct: 456 ADASENASVEAMLRKLDI-EPLEVEIDATIAEVDLNGALKYGTQFFFKSGGINAVLSTGT 514 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G + G + AL+ T ++ L+ P L +G++A+ G Sbjct: 515 TAALNQSFPGFVLAGHGADGAP---LAISALQSVTQVQVLSSPQLLVQNGRTANLLVGNL 571 Query: 293 HLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV 343 Y + +S + T+ V + GV+L TP + S G + L + +VS P + Sbjct: 572 VPYLSQTSQSTLTTGAPVINSVNYQETGVILQITPHISSDGLVALTVSQQVSNVAPSVTT 631 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + P++ R ++V + G TI LAGL+ D++Q+ G+P L +P+LG LF Sbjct: 632 QGLNSPTFSERAVSSSVVVHDGQTIGLAGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDN 691 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 +R E+ + TP +V D ++ D + N N Sbjct: 692 SRARQELLVLITPHVVHDA--------TDAAALTSDLEQALPNAANVPAELNGLPMDGSA 743 Query: 464 NYKGA 468 + + A Sbjct: 744 DPQAA 748 >gi|194364334|ref|YP_002026944.1| general secretion pathway protein D [Stenotrophomonas maltophilia R551-3] gi|194347138|gb|ACF50261.1| general secretion pathway protein D [Stenotrophomonas maltophilia R551-3] Length = 733 Score = 156 bits (395), Expect = 7e-36, Method: Composition-based stats. Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 23/260 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----------A 231 +V+ L++ QV ++ +AEV + + G + +G + + Sbjct: 446 EVIEKLDV-MPLQVHIEAQVAEVALEGDLKYGVNWFFDNAVAGRALTGALAGVTLPAAAG 504 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + + G + + V+ AL++ T +R L P++ + A+ G Sbjct: 505 GSWSSLAGAATGGEGLGWAFTGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGD 564 Query: 292 QHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----- 341 + T + +TG +SV D GV+L P V G + L I EVS Sbjct: 565 KVPINTTTVNTGIGTSSYSSVQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASNVPENC 624 Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 P +K T + SG TI+LAGL+ D GIP LS+IP++GALF Sbjct: 625 NPQERNCNPRISTKKLSTEAAVQSGDTIMLAGLITDTGTDGSSGIPGLSRIPVVGALFGQ 684 Query: 401 SRFNREETEIFIAATPFLVK 420 +E+ + TP +V+ Sbjct: 685 KSRTSRRSEVIVLLTPSIVR 704 >gi|90020782|ref|YP_526609.1| MSHA biogenesis protein MshL [Saccharophagus degradans 2-40] gi|89950382|gb|ABD80397.1| type II and III secretion system protein [Saccharophagus degradans 2-40] Length = 543 Score = 156 bits (395), Expect = 7e-36, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 113/299 (37%), Gaps = 23/299 (7%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 + L +V + + V + L S+ ++ ++ ++ QV L+ I Sbjct: 219 KLTLSAIVGGEANGRNVVVNPQAGLVVVRALPSEISAVREFLDRSELSVRRQVILETKIV 278 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKS---FAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 EV+ + Q G + +K+ F SE + +L Sbjct: 279 EVKLNDGFQAGVNWNEIRGQMLLTKNVETFDVPVDIVSASENVGEIFSSIFRIGDISQLL 338 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----------SSSTGATSVTT 309 LE ++ L+ P ++ ++ Q A G + T ++S +T+ Sbjct: 339 SLLETQGNVQVLSSPRVSTVNNQKAVIRVGSDEFFVTGISSQTTSTAASTTSAPNIELTS 398 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTV 360 G+ L TP + G + L + VSE + + + VR++D+ V Sbjct: 399 FFSGISLDVTPQIADNGDVILHVHPIVSEVTDQNKDITLGNEKFSLPLALREVRESDSIV 458 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG IVL GL+K+ + + P L +P+L LFR E+TE+ I P +V Sbjct: 459 RAQSGQIIVLGGLMKEKLNDVYSKRPGLGDVPVLNTLFRKRSKVSEKTELVILLRPIVV 517 >gi|308095101|ref|ZP_05903504.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus Peru-466] gi|308085930|gb|EFO35625.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus Peru-466] Length = 624 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194 V V + V+T + E ++ + + A ++ +N + + Sbjct: 219 VGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 278 Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236 Q ++V +I ++ + L+Q+G G++ D Sbjct: 279 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDIKTTGDVDN 338 Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V+ G S K +LD + + LE + + ++ PTL A + Sbjct: 339 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 398 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348 K V T A + YG +L P ++ I L + E + D+ Sbjct: 399 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 456 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T Sbjct: 457 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 516 Query: 409 EIFIAATPFLV 419 P +V Sbjct: 517 VRMFIIEPRIV 527 >gi|329890282|ref|ZP_08268625.1| general secretion pathway protein D [Brevundimonas diminuta ATCC 11568] gi|328845583|gb|EGF95147.1| general secretion pathway protein D [Brevundimonas diminuta ATCC 11568] Length = 698 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 102/314 (32%), Gaps = 39/314 (12%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 V + +V+ L++ QV ++ + E+ Sbjct: 319 TVTATGQRATIARFPGANALVISGPADLQRTLTEVIRQLDVR-RQQVLIEAIVVELSDKA 377 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV------------------- 250 ++ +G Q + G + +D V G + + Sbjct: 378 VRDLGVQW-LMAGEQGVGLTNYSDRAAPLVPIAGGAAAGQLDKDDPLRERLQNLALNSLL 436 Query: 251 ------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 F +++A + L P++ + + A+F G + T Sbjct: 437 GANGFVGGAGGKWGDGLFGFIINAAKTDAGSNLLQTPSIMTLDNEEATFLVGQEVPITTG 496 Query: 299 S-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYR 352 +S T+ D GV L P + + G I L ++ EVS + + Sbjct: 497 QTILDGNSNPFTTTERKDIGVRLTVRPQINAGGSITLTLRQEVSSINGLLTSGANDLILD 556 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ +TT+ + G V GLL + +P L IP +G LFR++ R T + + Sbjct: 557 KRELETTLVVDDGDIAVAGGLLDQNDGLETSKVPGLGDIPGVGVLFRSTSRERGRTNLMV 616 Query: 413 AATPFLVKPVAMRD 426 P +++ A Sbjct: 617 FLRPTILRTTADAQ 630 >gi|313199856|ref|YP_004038514.1| pilus (msha type) biogenesis protein mshl [Methylovorus sp. MP688] gi|312439172|gb|ADQ83278.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. MP688] Length = 603 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 116/292 (39%), Gaps = 28/292 (9%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + + ET + + ++ ++ + + QV ++ +I EV + Q G Sbjct: 282 AATVIASPETGVISVRATSRQHEKVQEFLDKVMASARRQVLIEASIVEVTLNDTYQAGID 341 Query: 217 HSITGSSSGPSKSFAAD----FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 + G + S G + G L L++ + L Sbjct: 342 WTRLGGGFNINGSLGTTGIVSPSGVAAAAGSVSPFVVGYSSNDISLGLRLLQQFGNTKVL 401 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSS-------------STGATSVTTHDYGVVLHFT 319 + P L ++ Q+A +Y T+ S + T+ T GVV+ T Sbjct: 402 SSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTTPNTVPVGVVMSVT 461 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPSGGTI 368 P + G++ + ++ +S V VN + +P +VR+ ++ + + SG T Sbjct: 462 PQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRELESVLRVNSGNTA 521 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 VL GL++D+IQQ + +P +SKIP G LF +TE+ I P +++ Sbjct: 522 VLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLRPIVIQ 573 >gi|308094808|ref|ZP_05891872.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AN-5034] gi|308093421|gb|EFO43116.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AN-5034] Length = 628 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194 V V + V+T + E ++ + + A ++ +N + + Sbjct: 223 VGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 282 Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236 Q ++V +I ++ + L+Q+G G++ D Sbjct: 283 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDIKTTGDVDN 342 Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V+ G S K +LD + + LE + + ++ PTL A + Sbjct: 343 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 402 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348 K V T A + YG +L P ++ I L + E + D+ Sbjct: 403 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 460 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T Sbjct: 461 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 520 Query: 409 EIFIAATPFLV 419 P +V Sbjct: 521 VRMFIIEPRIV 531 >gi|146338379|ref|YP_001203427.1| putative general secretion pathway protein D [Bradyrhizobium sp. ORS278] gi|146191185|emb|CAL75190.1| Putative general secretion pathway protein D [Bradyrhizobium sp. ORS278] Length = 780 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 70/353 (19%), Positives = 124/353 (35%), Gaps = 36/353 (10%) Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMV 151 G G N+ ++ R + + S R ++ G+ Sbjct: 404 AAGTTASTGF--SGASQANIGVVANRGFNGTPPPTQVGLDGGSEARASSAGGKPLMDGVR 461 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 T + + + + QV + TIAEV + Sbjct: 462 ITPDVVNNTLLIYADRENYRIIEATLRQCD---------RPQLQVAIDATIAEVTLNDNL 512 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--------------- 256 G Q +T + G + S + +F Sbjct: 513 TYGVQAYLTSKNLGLRPDQGSLLNTTSTSAPATVASAAGTITNAFLSRAFPGFNFLIGSE 572 Query: 257 ---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSV 307 +L AL T ++ L+ P+L I Q+A+ G Q T S++ T ++ Sbjct: 573 SQPSAILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVVNTI 632 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + G++L P V G + L I+ E+S P+ RK ++V + SG T Sbjct: 633 DYRNTGIILRVAPRVNENGNVRLEIEQEISNVSPQTANSLTPTVAQRKVKSSVAVASGQT 692 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++LAGL+ + Q + G+P + +IP G LF N+ +R TE+ I P +++ Sbjct: 693 VLLAGLISETHQGTRTGLPGVDQIPGFGDLFSNNDRSRGRTELIIFIRPQIIR 745 >gi|218886129|ref|YP_002435450.1| type II and III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757083|gb|ACL07982.1| type II and III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 552 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 100/267 (37%), Gaps = 42/267 (15%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITG------------------------------- 221 Q+ LK I E ++ +++G Q Sbjct: 253 RAQIQLKAHIVEATKETARELGIQWGGVNRVGNMAGSNDLWVTPGGTGGTAGTSPYNGSY 312 Query: 222 ---------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 S G +F D GK + G + E L AL+ ++ I L Sbjct: 313 TPIFGAPGISGQGNGINFPIDTTGKSGAGSLGLMF-GTIGGNMLEMQLSALQESSKINIL 371 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + P+++ + Q A +G + Y + ++ G V D + L TP V+ + L++ Sbjct: 372 SSPSISTLDNQMAYTENGEKVPYVST-NAQGDREVKFEDAVLRLEITPHVIDDKNLKLKV 430 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + E + P ++ +TT+ + G TIV++GL KD + G+P L + Sbjct: 431 LVKKDEVDLTRTVEGNPFIIKKQTETTLIVQDGETIVISGLTKDRKSTGRSGVPGLHDVE 490 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 LG LF + + E+ I TP ++ Sbjct: 491 GLGWLFGSDSKASKLEEVLIFITPAVL 517 >gi|326403170|ref|YP_004283251.1| type II secretory pathway protein D [Acidiphilium multivorum AIU301] gi|325050031|dbj|BAJ80369.1| type II secretory pathway protein D [Acidiphilium multivorum AIU301] Length = 758 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 69/305 (22%), Positives = 122/305 (40%), Gaps = 21/305 (6%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + N+S + ++ L+I +V + TIAEV + + G Q S Sbjct: 458 ADASENASVEAMLRKLDI-EPLEVEIDATIAEVDLNGALKYGTQFFFKSGGINAVLSTGT 516 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G + G + AL+ T ++ L+ P L +G++A+ G Sbjct: 517 TAALNQSFPGFVLAGHGSDGAP---LAISALQSVTQVQVLSSPQLLVQNGRTANLLVGNL 573 Query: 293 HLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV 343 Y + +S + T+ V + GV+L TP + S G + L + +VS P + Sbjct: 574 VPYLSQTSQSTLTTGAPVINSVNYQETGVILQITPHISSDGLVALTVSQQVSNVAPSVTT 633 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + P++ R ++V + G TI LAGL+ D++Q+ G+P L +P+LG LF Sbjct: 634 QGLNSPTFSERAVSSSVVVHDGQTIGLAGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDN 693 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 +R E+ + TP +V D ++ D + N N Sbjct: 694 SRARQELLVLITPHVVHDA--------TDAAALTSDLEQALPNAANVPAELNGLPMDGSA 745 Query: 464 NYKGA 468 + + A Sbjct: 746 DPQAA 750 >gi|28373014|ref|NP_783687.1| hypothetical protein pYVa12790_p34 [Yersinia enterocolitica] gi|32470300|ref|NP_863535.1| hypothetical protein pYVe8081_p30 [Yersinia enterocolitica] gi|122815824|ref|YP_001004090.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|14579358|gb|AAK69235.1|AF336309_30 YscC [Yersinia enterocolitica] gi|23630586|gb|AAN37542.1| YscC [Yersinia enterocolitica] gi|121663698|emb|CAL10060.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 607 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 113/324 (34%), Gaps = 20/324 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 E + L+R ++D+ I+ V + + Q + RA + S Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQVATRASAQARVEADPSLNAII 257 Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S +++ L++ + ++V +I ++ D L ++G + + + Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317 Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G S G S+ ++ LE + + ++ PTL A Sbjct: 318 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAG 346 + K + YG +L TP VL+ G I L + E + Sbjct: 378 SETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435 Query: 347 -DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ DT + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 436 EGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495 Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429 T P ++ L+ Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519 >gi|253997792|ref|YP_003049855.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4] gi|253984471|gb|ACT49328.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4] Length = 604 Score = 156 bits (394), Expect = 8e-36, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 116/292 (39%), Gaps = 28/292 (9%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + + ET + + ++ ++ + + QV ++ +I EV + Q G Sbjct: 283 AATVIASPETGVISVRATSRQHEKVQEFLDKVMASARRQVLIEASIVEVTLNDTYQAGID 342 Query: 217 HSITGSSSGPSKSFAAD----FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 + G + S G + G L L++ + L Sbjct: 343 WTRLGGGFNINGSLGTTGIVSPSGVAAAAGSVSPFVVGYSSNDISLGLRLLQQFGNTKVL 402 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSS-------------STGATSVTTHDYGVVLHFT 319 + P L ++ Q+A +Y T+ S + T+ T GVV+ T Sbjct: 403 SSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTTPNTVPVGVVMSVT 462 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPSGGTI 368 P + G++ + ++ +S V VN + +P +VR+ ++ + + SG T Sbjct: 463 PQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRELESVLRVNSGNTA 522 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 VL GL++D+IQQ + +P +SKIP G LF +TE+ I P +++ Sbjct: 523 VLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLRPIVIQ 574 >gi|194367008|ref|YP_002029618.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3] gi|194349812|gb|ACF52935.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3] Length = 657 Score = 156 bits (394), Expect = 8e-36, Method: Composition-based stats. Identities = 51/315 (16%), Positives = 112/315 (35%), Gaps = 56/315 (17%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + ++ L+N+ DQV ++ I +++G + I Sbjct: 338 RIVADERTNTLMISDIPKKIARMRELINVIDRPVDQVLIESRIVIATDTFARELGAKFGI 397 Query: 220 TGSSSG-----------------------------------------------PSKSFAA 232 +GS ++ Sbjct: 398 SGSRDNVYFSGNLEANRLTRESQVKTAQDNAKAERDWIAGGRVGPPPVATGSTITRGLNW 457 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 S G ++ + + + L A++ + ++ P + + + A+ G + Sbjct: 458 SLPVATASNPGSLALSILNAGYLLDVELSAMQEESRGEVISNPRVVTTNQREATIKQGKE 517 Query: 293 HLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNA 345 Y T+S +V + + L TPT+ + R+ L +Q EV + + Sbjct: 518 IGYVTISGGGTGGVATPNVQFKEVVLELKVTPTITNDNRVFLNMQVKKDEVDQLIQLDGY 577 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 G +PS R+ +T V + G T+V+ G+ + + +P L +P LG LF+ N+ Sbjct: 578 GTVPSINRREVNTAVLVEDGQTVVIGGVYEFTDRSSISKVPFLGDVPFLGNLFKKRGRNK 637 Query: 406 EETEIFIAATPFLVK 420 ++ E+ + TP +++ Sbjct: 638 DKAELLVFVTPKVLR 652 >gi|91776807|ref|YP_546563.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91710794|gb|ABE50722.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 723 Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 3/200 (1%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S ++ + FS+ + F L ALE + ++ P +T Sbjct: 521 GVSPDGAQDLNVNLPVANAFGNFAFSLFRLPAGFLLNLELSALETDQRGKIVSSPRVTTA 580 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + Q A G Q ++ +SS GAT+V + + L TP + +I + + EV + Sbjct: 581 NQQKAIIEQGTQIPFQQATSS-GATAVQFKNASLSLEVTPQITPDEKIIMDL--EVKKDK 637 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +GV ++PS ++ T V + +G T VL G+ + + + +P +P LG +F+ Sbjct: 638 VGVVFNNVPSIDTQRVQTQVLVANGETAVLGGIYEQTERNDVDKVPFFGDLPFLGNVFKR 697 Query: 401 SRFNREETEIFIAATPFLVK 420 ++TE+ I TP ++ Sbjct: 698 RVKQSDKTELLIFITPKVMD 717 >gi|28898470|ref|NP_798075.1| putative type III secretion protein YscC [Vibrio parahaemolyticus RIMD 2210633] gi|28806688|dbj|BAC59959.1| putative type III secretion protein YscC [Vibrio parahaemolyticus RIMD 2210633] Length = 632 Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194 V V + V+T + E ++ + + A ++ +N + + Sbjct: 227 VGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 286 Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236 Q ++V +I ++ + L+Q+G G++ D Sbjct: 287 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDIKTTGDVDN 346 Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V+ G S K +LD + + LE + + ++ PTL A + Sbjct: 347 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 406 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348 K V T A + YG +L P ++ I L + E + D+ Sbjct: 407 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 464 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T Sbjct: 465 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 524 Query: 409 EIFIAATPFLV 419 P +V Sbjct: 525 VRMFIIEPRIV 535 >gi|325915066|ref|ZP_08177395.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC 35937] gi|325538764|gb|EGD10431.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC 35937] Length = 680 Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 62/317 (19%), Positives = 117/317 (36%), Gaps = 42/317 (13%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V + + + V+ L++ +QV ++ + E+ Sbjct: 305 APAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV-HREQVLVEAIVVEISDTAA 363 Query: 211 KQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255 K++G Q + G + ++ A G ++ + G D S Sbjct: 364 KRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAASGTRSGNDDDDSVLEQARNVAAQ 423 Query: 256 --------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 F ++ A++ T L+ P++ + + A G + Sbjct: 424 SLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVGQEVPI 483 Query: 296 KTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMP 349 T + ++ D GV L P + + G I L I+ EVS V+A Sbjct: 484 TTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSEL 543 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R+ +T V + +G + L GLL + +Q E +PLL +P LGALFR+ NR++T Sbjct: 544 VFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTN 603 Query: 410 IFIAATPFLVKPVAMRD 426 + + P +++ A Sbjct: 604 LMVFIRPTIIRDAADAQ 620 >gi|268679665|ref|YP_003304096.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum deleyianum DSM 6946] gi|268617696|gb|ACZ12061.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum deleyianum DSM 6946] Length = 506 Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 115/320 (35%), Gaps = 34/320 (10%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRR 207 V T + +A + +V + LL QV + V+I V Sbjct: 183 VNTGAEGYKAQAPIINANAGIITVTGTKKQLDRVSEYIELLKERLHKQVLIDVSIISVAL 242 Query: 208 DILKQIGFQHSITGSSSGPSKSF-----------AADFGGKFVSEGGDFSVKGVLDRFSF 256 D + G S + F + + +S + V++ F Sbjct: 243 DSSNKTGIDWSKFQLGFNSTSMFNNNNDNANMYHTSPYSEVGLSGTPILNNLTVVNDAVF 302 Query: 257 ET--VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------V 307 ++ L + + ++ P + ++ Q A T G Y+ + AT+ V Sbjct: 303 SVSGLIDFLGSSGDAKVVSSPKVLTMNNQQALITVGDNINYRIPEETDAATTSGTATLSV 362 Query: 308 TTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKA 356 T +Y GV+L+ TP + I LRI VS + P + +K Sbjct: 363 TYMNYSIFIGVLLNITPEISEDNEIILRINPSVSSFKYTDDDQKTTEPREIAPDTQEKKL 422 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V++ G TI+L GL+ + +PLLS IP+LG F++S + E+ TP Sbjct: 423 STVVKVKDGSTIILGGLIASEKGHENSSVPLLSSIPLLGEAFKHSEETLKTKELVFVITP 482 Query: 417 FLVKPVAMRDLSRPDDHYSV 436 ++ + D +S Sbjct: 483 RIIGAKGTDKATLKDLGFSQ 502 >gi|153836207|ref|ZP_01988874.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AQ3810] gi|308126333|ref|ZP_05909374.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AQ4037] gi|149750482|gb|EDM61227.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AQ3810] gi|308110700|gb|EFO48240.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AQ4037] Length = 624 Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194 V V + V+T + E ++ + + A ++ +N + + Sbjct: 219 VGGVQTQITDSASVQTSPVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 278 Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236 Q ++V +I ++ + L+Q+G G++ D Sbjct: 279 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIIDIKTTGDVDN 338 Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V+ G S K +LD + + LE + + ++ PTL A + Sbjct: 339 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 398 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348 K V T A + YG +L P ++ I L + E + D+ Sbjct: 399 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 456 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T Sbjct: 457 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 516 Query: 409 EIFIAATPFLV 419 P +V Sbjct: 517 VRMFIIEPRIV 527 >gi|190575670|ref|YP_001973515.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia K279a] gi|190013592|emb|CAQ47227.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia K279a] Length = 655 Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 50/314 (15%), Positives = 112/314 (35%), Gaps = 55/314 (17%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + ++ L+N+ DQV ++ I +++G + I Sbjct: 337 RIVADERTNTLMISDIPKKIARMRELINVIDRPVDQVLIESRIVIATDTFARELGARFGI 396 Query: 220 TGSSSGP-----------------------------------------------SKSFAA 232 +GS ++ Sbjct: 397 SGSRDNAYFSGNLEANEATRKSQVEANATNAKAYRDWLAGGSTGPAPVPVGSAITRGLNW 456 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + G ++ + + + L A++ + ++ P + + + A G + Sbjct: 457 AMPAASTNPAGSLALSILNAGYLLDVELSAMQEESRGEVISNPRVVTTNQREALIKQGKE 516 Query: 293 HLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAG 346 Y T+S+ G +V + + L TPT+ + R+ L +Q EV + G Sbjct: 517 IGYVTISAGAGGVATPNVQFKEVVLELKVTPTITNDNRVFLNMQVKKDEVDRLIQLEGYG 576 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +PS R+ +T V + G T+V+ G+ + + +P L +P LG LF+ +++ Sbjct: 577 TVPSINRREVNTAVLVEDGQTVVIGGVYEFTDRNSISKVPFLGDVPFLGNLFKKRGRSKD 636 Query: 407 ETEIFIAATPFLVK 420 + E+ + TP +++ Sbjct: 637 KAELLVFVTPKVLR 650 >gi|289547821|ref|YP_003472809.1| type II and III secretion system protein [Thermocrinis albus DSM 14484] gi|289181438|gb|ADC88682.1| type II and III secretion system protein [Thermocrinis albus DSM 14484] Length = 575 Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 29/251 (11%) Query: 196 VTLKVTIAEVRRDILKQIGFQHS----------ITGSSSGPSKSFAADF----------- 234 V+++ I E+R + L+++G + G + + Sbjct: 325 VSIEARIVEIREEALRELGINWNMLLSSARLPEAWSGGVGSNIGIGSPPTPGNLFLTPPY 384 Query: 235 --GGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + GG ++ + + ALER ++LA+PT+ AI+GQ A+ G Sbjct: 385 LQPGLSPNPGGILTLTYQKGIINALNLRISALERVNLAKSLAKPTIVAINGQKATIKQGV 444 Query: 292 QHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 Q Y + T ++ D + L TP V GRI L + ++ +GV Sbjct: 445 QVPYLTAAVGAGGTAVPNIQFKDVVLQLDVTPIVSPDGRILLDLS--LTRDTLGVQTPQG 502 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ ++ T V + +G T+V+ G++ + EGIP ++P+L LF R N+ +T Sbjct: 503 PAINKKEVRTKVIVENGQTLVIGGVIDNQSYTTNEGIPGFVRVPLLKYLFGQERLNKSDT 562 Query: 409 EIFIAATPFLV 419 E+ I TP ++ Sbjct: 563 ELLIFITPTVL 573 >gi|302326451|gb|ADL25652.1| putative bacterial type II/III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 585 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 36/332 (10%) Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEM--TLRRFIADSNIRVEMV--SDTVVLHGMV 151 +++ + K + ++ + + ++ + L +F+ S + V + +VL G Sbjct: 260 SSSLWVSEEGAKALADVRVFSLKHVSPEKAMAQLSKFMKGSELNVSEYREQNALVLGGSP 319 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 R I ++ +++ + V + QVTL I E R+ Sbjct: 320 RAIARAEELLKMVD------------------VPQM-------QVTLACVIVEFRKGRSF 354 Query: 212 QIGFQHSITG--SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 IG + T DF GK +S+ G F G+L FE L ++E Sbjct: 355 AIGVRSGATRNVGERDIQARGFFDFLGKDISKSGAFGKIGIL-PDRFELELSSMEENNEA 413 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPG 326 + LA P +T ++G A Y S +T + G+ L TPT+ G Sbjct: 414 KVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDYRSFNDGISLELTPTMTQDG 473 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L + E+ + R TTV L G T+ L GL++ + +++ +P Sbjct: 474 LITLSVSPEI-KTAGRSTGDGPRDISSRNMKTTVVLRDGETLCLGGLIRKNKTEVRSAVP 532 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L IPILG LF + +E+E+ I TP + Sbjct: 533 FLGSIPILGRLFSYTSEEEDESELAIFITPSV 564 >gi|328468919|gb|EGF39879.1| putative type III secretion protein YscC [Vibrio parahaemolyticus 10329] Length = 628 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194 V V + V+T + E ++ + + A ++ +N + + Sbjct: 223 VGGVQTQITDSASVQTSPVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 282 Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236 Q ++V +I ++ + L+Q+G G++ D Sbjct: 283 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRTGVSVGNNRIVDIKTTGDVDN 342 Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V+ G S K +LD + + LE + + ++ PTL A + Sbjct: 343 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 402 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348 K V T A + YG +L P ++ I L + E + D+ Sbjct: 403 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGTKIPDGGVDDL 460 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T Sbjct: 461 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 520 Query: 409 EIFIAATPFLV 419 P +V Sbjct: 521 VRMFIIEPRIV 531 >gi|255322161|ref|ZP_05363307.1| type II and III secretion system protein [Campylobacter showae RM3277] gi|255300534|gb|EET79805.1| type II and III secretion system protein [Campylobacter showae RM3277] Length = 481 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 65/331 (19%), Positives = 114/331 (34%), Gaps = 55/331 (16%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 +L+ +I + + L + + + + QV + V+I Sbjct: 129 KAILNNTTESIVAPDPIIN-ANAGLVTVTGTAAQLRRVSEYIKDIQERLKKQVVIDVSII 187 Query: 204 EVRRDILKQIGFQHSITGSSS-----------------------GPSKSFAADFG----- 235 V G S P+ + + +G Sbjct: 188 SVELANSYTKGVDWSKFNIGFKTGLYNRTVVTGVTETVGQDAAGNPTTTLSRTYGLIPAN 247 Query: 236 -------GKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 G + G S+ + F+ + VL+ LE + ++ P +T ++ Q A Sbjct: 248 DLFWSNRGNGLGGGFSQSMNLIAGFNFNLDGVLNFLETNGRTKVVSSPKITTLNNQQALI 307 Query: 288 TSGGQHLYKTVSSS------TGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVS 337 + G Y+ S G T++T Y G++L+ P V +I LRI +S Sbjct: 308 SVGDNVNYRVQEESQNNNALNGKTTITYKQYSVFIGILLNILPEVSDDNKIMLRINPSLS 367 Query: 338 EP--------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 P +K T V++ SG TIVL GL+ + +P L Sbjct: 368 SFKYNEDDVRQSTTIREIAPDTIQKKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLG 427 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+LG F++++ N TE+ TP +V Sbjct: 428 DIPVLGHAFKSTKDNLRTTELVFIITPRIVD 458 >gi|53802350|ref|YP_112861.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath] gi|53756111|gb|AAU90402.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath] Length = 729 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 87/244 (35%), Gaps = 15/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------GKFVSEGG 243 QV ++ + D L+++G + + ++ +S G Sbjct: 484 RQVMIESRVVIANVDFLRELGAKLDFRPKNLTAAERLNPTGSMADLGVDLAKLTTLSPYG 543 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + + + L A ++ +A P + A G + Y+ TG Sbjct: 544 TAQYVVSMGDYLLDLELSAAQKEGRGEIVANPRVLTADQSKAKIMQGVELPYQITQQGTG 603 Query: 304 ----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 +V + L TP + I + + + + + + R+ DT Sbjct: 604 GGIPVQNVAFKPAVLELDVTPHITPDDHILMDLMVKKDD-KGELAPNGNFAIEKREIDTV 662 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++ +G T+VL G+ + + + +P +P +G +FR + + E+ I TP +V Sbjct: 663 AQVANGETVVLGGVYEGTRRNNTDKVPFFGDLPGIGFMFRRNAVEDRKKELLIFITPKIV 722 Query: 420 KPVA 423 K + Sbjct: 723 KQTS 726 >gi|307721768|ref|YP_003892908.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] gi|306979861|gb|ADN09896.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] Length = 565 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 71/432 (16%), Positives = 159/432 (36%), Gaps = 36/432 (8%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-----RTMYLFGKNVGQANVIL 101 I + N+ +L + ++ +++ + +V + + +FGK G ++++ Sbjct: 16 ANDILVFNNEYQVLPLQKKIKRLIIGNKETINVSLLDAVSAKGTLLKIFGKKTGNTSILV 75 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 I D + N + + ++ +++ + + + ++ +D+ V+ G+ + D +R Sbjct: 76 IYTDNS-IQNYHVYVNENLGYIQKMINIIEPNLRLS-KVGNDSTVIAGVFKDPHDKKRIY 133 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 E+ + + + + + +N + + K+ + V K +G ++ Sbjct: 134 EILQK--GGINTEKLMDLTKTQKVNKM-------IRTKLYLIAVDNQKAKDLGGVTGLSF 184 Query: 222 SSSGPSKSFAADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + + A G + S L+ L+ L + L Sbjct: 185 FNKYVNATANAAAANSATFSGFLLDNLGNFTTSTGNSVLATLNFLQTKGITNILDDTVLI 244 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 ++A+F GG+ T + T V +YG+ L T + + I Sbjct: 245 TTEDKNATFRVGGELYIPTGITQNVGTAPTIQVEAKEYGLKLTLTSKFMQTNG-YMHINV 303 Query: 335 EVSEPVIGVN---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 ++ + I N +PS+ + T V + S I L G L + + +E + Sbjct: 304 DIQDSAIDANIAHNVSLGDGISIPSFVSKNIKTNVVVKSEQVIALGGRLHSENSKSEEKV 363 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 PL IPILG LF++ N T++ P +V D D Y ++ Sbjct: 364 PLFGDIPILGELFKHKIENLGTTDLIFLLVPEIVDANEDIDD---TDFYRNFKNSSNILH 420 Query: 446 NRVNKIYGPKEA 457 +V + + A Sbjct: 421 AKVTDVPKEEAA 432 >gi|152991627|ref|YP_001357348.1| type II secretion system protein D [Sulfurovum sp. NBC37-1] gi|151423488|dbj|BAF70991.1| type II secretion system protein D [Sulfurovum sp. NBC37-1] Length = 678 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 108/305 (35%), Gaps = 39/305 (12%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 V E + ++ + ++I + QV +K I E+ +++ +Q+ Sbjct: 297 PPSKAMVVSDIERNALIVLATGEQMRNIRETVRKIDIP-KVQVYVKAKIVEIDKNMAEQV 355 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVS------------------------------EGG 243 G ++ + G + S F + Sbjct: 356 GMKYGMNGGTITSSGLFTLAGNMGASALQMSPALLGFLNTNNTKTYTDPVTGSVIQENNP 415 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG------QHLYKT 297 F F+ L LE+ A L+EP++ + + A G Q T Sbjct: 416 AFKFDSTDKAFALGAALDLLEKNGAAHLLSEPSVLCTNNKEAEIYVGQTRSILTQAQQST 475 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKA 356 + S + + D G+ L P + S ++ L ++T + + D P+ R Sbjct: 476 TAISNVINNYSREDIGLTLKVKPRLSSNNQVTLEVETVLEDIDPSSEQVEDRPTTTKRTV 535 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAAT 415 T + +G I+L GL+K + +P L IP+LG LF ++ E + I T Sbjct: 536 KTNAIVRNGEMIILGGLIKRAGGKNISKVPFLGDIPVLGEMLFTHTGDVEREQNVVIYLT 595 Query: 416 PFLVK 420 P++V+ Sbjct: 596 PYIVR 600 >gi|191174167|ref|ZP_03035680.1| bacterial type II and III secretion system protein [Escherichia coli F11] gi|191174561|ref|ZP_03036057.1| bacterial type II and III secretion system protein [Escherichia coli F11] gi|300972444|ref|ZP_07171951.1| bacterial type II/III secretion system short domain protein [Escherichia coli MS 200-1] gi|190905169|gb|EDV64812.1| bacterial type II and III secretion system protein [Escherichia coli F11] gi|190905585|gb|EDV65211.1| bacterial type II and III secretion system protein [Escherichia coli F11] gi|300309168|gb|EFJ63688.1| bacterial type II/III secretion system short domain protein [Escherichia coli MS 200-1] Length = 421 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 105/245 (42%), Gaps = 12/245 (4%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 +N +++A DQV ++ + E + F + G + GG Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301 F G+ D L A++ + + ++ P + SGQ+ + G + T + Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGES 297 Query: 302 ----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 ++ HD GV L TP V+ G++ L I T A D+ R+ Sbjct: 298 AGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDI-ITNQRQIQ 356 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTV++ G T++L GL+ + +P++SKIP++G +F + + E+ ++I T Sbjct: 357 TTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNEQRIMYILLTAH 416 Query: 418 LVKPV 422 +++P+ Sbjct: 417 IIRPL 421 >gi|289662170|ref|ZP_06483751.1| fimbrial assembly protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 652 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 99/287 (34%), Gaps = 53/287 (18%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223 DQV ++ I + +G + ++G++ Sbjct: 364 RPVDQVLIESRIVIATDTFARDLGARFGVSGATGRGILSGSLESNVNYQNTSAQRANELA 423 Query: 224 ------------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + GG S + + F+ + L A++ Sbjct: 424 STATATSPGTSNTIPQFLFPSGLNIDLGAGGFTTSGAAGLAYTLLGSHFNLDIELSAMQE 483 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTP 320 ++ P + + + G + Y T+ + +V + + L TP Sbjct: 484 EGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGAGAAGGGSQANVQFKEVLLELKVTP 543 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 T+ + R+ L + + E + G +P R+ +T V + G T+V+ G+ + Sbjct: 544 TITNDNRVFLNMNVKKDEVARFITLPQYGTVPEINRREVNTAVLVADGETVVIGGVYEFT 603 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 ++ +P L IP LG LF+ ++E+ E+ + TP +++ + Sbjct: 604 DRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 650 >gi|302879515|ref|YP_003848079.1| type II and III secretion system protein [Gallionella capsiferriformans ES-2] gi|302582304|gb|ADL56315.1| type II and III secretion system protein [Gallionella capsiferriformans ES-2] Length = 599 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 110/295 (37%), Gaps = 33/295 (11%) Query: 157 SQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + A ++ + + ++ ++ + QV L+ TI EV Q G Sbjct: 274 REAAYVIANPETGIISVRATSRQHATIREFIDKVMNNARRQVLLEATIVEVTLSDQYQQG 333 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S+ + G S + + G ++ G FS + LE + L+ Sbjct: 334 IDWSLL-RTLGLSLTQVSPVGALTAMGTISYTNPGKPGSFSLSGSIKLLETFGKLHVLSS 392 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA--------------TSVTTHDYGVVLHFTP 320 P L+ ++ Q+ + +Y T+ + G +++ T G +++ TP Sbjct: 393 PKLSVLNNQTGLVKVVDESVYFTIEVTQGTYGANNTVLTLPTYTSTIHTVPVGFMMYVTP 452 Query: 321 TVLSPGRIGLRIQTEV---------------SEPVIGVNAGD-MPSYRVRKADTTVELPS 364 + + L ++ + + ++ + +P + R+ ++ + + + Sbjct: 453 QIGGDTEVTLNLRPTITRILSYAKDPNPALINTITPALSVTNLIPQIQTREMESIMRVRN 512 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G VL GL++D IP L +P LG LF+ ++E+ + P ++ Sbjct: 513 GDIAVLGGLMQDTRAGDTNQIPGLGSVPGLGQLFKARTDKNTKSELVVFLRPVIL 567 >gi|254455430|ref|ZP_05068859.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211] gi|207082432|gb|EDZ59858.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211] Length = 516 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 55/292 (18%), Positives = 110/292 (37%), Gaps = 30/292 (10%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + E + T + + KV+N ++I +QV ++ + + + KQ Sbjct: 231 NAYSPIKITEETATRSIIVRGKERDLDTVDKVLNEIDIKT-EQVLIEAFVVKATSEFEKQ 289 Query: 213 IGFQHSIT--------GSSSGPSKSFAAD---------------FGGKFVSEGGDFSVKG 249 +G + G G + S + Sbjct: 290 LGTRLGGYYKRNDEQIGGIVGSTSSAGTLDDTSAALAQVAKDQITNFAATGATSGIGILK 349 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + + ALE+ + T++ P + I+ Q AS T G + Y+T S T +TS Sbjct: 350 KTGSAVLKAEITALEKMGMVETISNPKVFTINNQPASVTQGKEIPYETTSEGTTSTS--F 407 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + L TP+++ G + L IQ + + D P + T + + G +V Sbjct: 408 KEAALKLQVTPSIIGDGNVLLDIQVNNDD---ADTSQDEPPITKMEIITKLLVADGDIVV 464 Query: 370 LAGLLKDDIQQLKEGIP-LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G+ ++I + KE +P L +P++G L + + + E+ I P ++ Sbjct: 465 IGGIKSNNISKAKEQVPGGLGNVPVIGNLLKYKKKEDKLEELLIFIAPRVLD 516 >gi|149376650|ref|ZP_01894409.1| Type II secretory pathway, component PulD [Marinobacter algicola DG893] gi|149359023|gb|EDM47488.1| Type II secretory pathway, component PulD [Marinobacter algicola DG893] Length = 578 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 110/321 (34%), Gaps = 36/321 (11%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA- 231 + + + ++ + + + QV L+ I E+ + Q G + S+S + S Sbjct: 264 SDGKSLAQVEEYLRRTQLIMQRQVVLEAKILEIGLNEGYQQGINWADIQSASSVTASDGL 323 Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 A G + + F ++ L ++ L+ P ++ ++ Q Sbjct: 324 PEDFTAQALAGQVITTSDIGGLFSASVRAGDFTGLIELLGEQGNVQILSSPRISTVNNQK 383 Query: 285 ASFTSGGQHLY-------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 A G + ++ + +T G+ L TP + G I L Sbjct: 384 AVIKVGTDEFFVTDIDFDDNNSAVTATDRTSTSVELTPFFSGISLDVTPQISEDGAITLH 443 Query: 332 IQTEVSEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + VSE + VR+ D+ + SG +V+ GL+++ + Sbjct: 444 VHPSVSEVNDQKKVITVGDRDVTLPLALSTVRETDSVIRAESGQIVVIGGLIQNTSEDNN 503 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +P S+IP+LG LF+ RF ++E+ I +PV D S D Sbjct: 504 SAVPFFSEIPLLGELFKQRRFQSRKSELVILL-----RPVVAGSQQMNAD-VSASRDRMR 557 Query: 443 FFFNRVNKIYGPKEASEVEGQ 463 + K E + Sbjct: 558 VLRELLESSESVKPQPEKARR 578 >gi|145301440|ref|YP_001144279.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449] gi|66947980|emb|CAE83117.1| AscC protein [Aeromonas salmonicida subsp. salmonicida] gi|88698168|gb|ABD48952.1| AscC [Aeromonas salmonicida subsp. salmonicida A449] gi|142856322|gb|ABO92531.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 617 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 50/314 (15%), Positives = 101/314 (32%), Gaps = 19/314 (6%) Query: 116 IERDIAHLEMTLRRFIADSNIR-VEMVSDTVVL--HGMVRTIQDSQRAVELSETFLSQSG 172 + + L + ++D+ ++ V + G D + + Sbjct: 212 TDVAAPGVATILAKLLSDAGVQMVNGEGNKAATATSGQAIVQADPSLNAVIVRDAPERMA 271 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 ++ K + +A I ++ + L Q+G + + + Sbjct: 272 MYGKLIAALDKPAARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVIIK 323 Query: 233 DFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G S+ ++ LE + ++ PTL A Sbjct: 324 TTGDRKGIEGGAALGSLVDSKGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHS 383 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAG 346 + K S + YG +L TP V+ G I L + E ++ A Sbjct: 384 ETYYVKI--SGERVAELQGITYGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPNSAGAD 441 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P+ DT + G ++++ G+ +D++ + +P L IP LGALFR+ Sbjct: 442 GIPTISRTVVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRSKDTQTR 501 Query: 407 ETEIFIAATPFLVK 420 + P L+ Sbjct: 502 RSVRLFIIEPRLID 515 >gi|261414950|ref|YP_003248633.1| type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371406|gb|ACX74151.1| type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 603 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 36/332 (10%) Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEM--TLRRFIADSNIRVEMV--SDTVVLHGMV 151 +++ + K + ++ + + ++ + L +F+ S + V + +VL G Sbjct: 278 SSSLWVSEEGAKALADVRVFSLKHVSPEKAMAQLSKFMKGSELNVSEYREQNALVLGGSP 337 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 R I ++ +++ + V + QVTL I E R+ Sbjct: 338 RAIARAEELLKMVD------------------VPQM-------QVTLACVIVEFRKGRSF 372 Query: 212 QIGFQHSITG--SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 IG + T DF GK +S+ G F G+L FE L ++E Sbjct: 373 AIGVRSGATRNVGERDIQARGFFDFLGKDISKSGAFGKIGIL-PDRFELELSSMEENNEA 431 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPG 326 + LA P +T ++G A Y S +T + G+ L TPT+ G Sbjct: 432 KVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDYRSFNDGISLELTPTMTQDG 491 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L + E+ + R TTV L G T+ L GL++ + +++ +P Sbjct: 492 LITLSVSPEI-KTAGRSTGDGPRDISSRNMKTTVVLRDGETLCLGGLIRKNKTEVRSAVP 550 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L IPILG LF + +E+E+ I TP + Sbjct: 551 FLGSIPILGRLFSYTSEEEDESELAIFITPSV 582 >gi|260775643|ref|ZP_05884539.1| type III secretion system outer membrane pore YscC [Vibrio coralliilyticus ATCC BAA-450] gi|260608059|gb|EEX34228.1| type III secretion system outer membrane pore YscC [Vibrio coralliilyticus ATCC BAA-450] Length = 686 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 60/358 (16%), Positives = 118/358 (32%), Gaps = 20/358 (5%) Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 + D V + G ++I L+ D LN ++ ++ E LR+ Sbjct: 193 ASVTDREVRYRNEHIVI---PGVTSLIKELLSQDRNPALN-EVEHLYNLNQ-ERILRQTQ 247 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + +S ++ + + S ++++ L+ Sbjct: 248 SIEGGDQMDISPYIMGGSRAPETNSVNNVSADVRSNSVLIYDDLAKRSMYQRLIEKLD-K 306 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 V + I ++ R L QIG + G G + + Sbjct: 307 PSRMVEIDAIILDIERKQLSQIGVNWGYQKNDF--------SLGSMMPQGGVQTATLFIQ 358 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D+ F L ALE LA P++ ++ Q A S +T V Sbjct: 359 DKGRFYAELQALEMKGKATVLANPSVLTMANQPAVIDSSETAFIQT--EGERVVDVREVT 416 Query: 312 YGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIV 369 G L P +L G+ +++ ++ + I + PS T + ++V Sbjct: 417 AGTGLQVVPRILTGGGKTTIQLNVDIEDGNIFEEEDKETPSVNRSTISTQALVTPEQSLV 476 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 G + + +P+L IP+LG+LF+ + R + TP ++ +D+ Sbjct: 477 FGGFNVSENTRSTSKVPVLGDIPLLGSLFQVQKEARTKRVRLFILTPRILDSSMTQDV 534 >gi|322418671|ref|YP_004197894.1| type II and III secretion system protein [Geobacter sp. M18] gi|320125058|gb|ADW12618.1| type II and III secretion system protein [Geobacter sp. M18] Length = 862 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 72/407 (17%), Positives = 146/407 (35%), Gaps = 68/407 (16%) Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 D V + T+ ++ K + + + L + D +R + I Sbjct: 241 LDKKVLNESTIIIYPKTPDKIK-----QYEELFVQTFYLNKLDAKKAVNLVRTMLQVKKI 295 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V ++ +V+ ++ +++ +E AN +V Sbjct: 296 YVNEEANALVIRDTPEVVEVARKILE--------------ANDVPD-----------AEV 330 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------------GK 237 L+V + E+ + + G S +S G + Sbjct: 331 LLEVEVFELSKAGTETFGLLLSSYAASMGVTGPQGKFLSDALSTTTTTSTTSGTTTTVAD 390 Query: 238 FVSEGGDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-- 294 + FSV+G + + + + TL+ P + + + A F G + Sbjct: 391 VSNLLNVFSVRGYNGYLTVPSATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRVPIT 450 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMP 349 + +S+ + +V D GV ++ PT+ + +++ EVS V A + Sbjct: 451 TTSSTSTGTSVNVQYVDVGVKVNAEPTIQLNNEVVIKLGLEVSSILGREKVGTDQATTVV 510 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R DT + L G T ++ GL++ K+ + LL IP+LG LF N+ + +++E Sbjct: 511 TIGTRNLDTVLSLKDGETSIIGGLMQKSETDSKKKVFLLGDIPVLGNLFSNTGKSNDKSE 570 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 + +A TP +V+ V E+D AF+ R ++ Sbjct: 571 LLLAITPRIVRGV-----------TVPENDVAAFWSGREDEPSTTAP 606 >gi|239618224|ref|YP_002941546.1| type II and III secretion system protein [Kosmotoga olearia TBF 19.5.1] gi|239507055|gb|ACR80542.1| type II and III secretion system protein [Kosmotoga olearia TBF 19.5.1] Length = 2628 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 76/404 (18%), Positives = 140/404 (34%), Gaps = 49/404 (12%) Query: 32 ANAAVINISDVEIGKGKKISI----GLNKVIILQVPVDVQDVLVSDPTKAD---VVVHSP 84 A A + I K IS+ L++ L + D V+ + V V Sbjct: 2260 AENANLIAVMKRIAKSLGISLMVPEELDETFTLTLEGVTWDTFVA--AIQECEPVKVEKV 2317 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 +Y+ K + G+Q+ + +I L+ + + + V+ Sbjct: 2318 NDIYIVRKKEIVSEAPTDDATGEQIYRV----YHNIEELKTLIE--FYGGTVYADSVNGI 2371 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 +V+ G+ ++ R +EL E + QV ++ I + Sbjct: 2372 LVVKGLPKS-----RVLELMEQVSGTFTSP------------------KKQVKIETRIVD 2408 Query: 205 VR--RDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 DI KQ + S S F + + + L Sbjct: 2409 KSLLDDITKQFSTSLGFEQPNILFSSGSLNLSFSILDSVDFAKLLKNLITGSATITAQLE 2468 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLH 317 + ++ P++ A+SG+ A G ++ + + GV + Sbjct: 2469 --KSNVDGSIISNPSIVALSGEEARIHIGDTIPILLKKIDPATGNIVEELQYLETGVEMT 2526 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TPTV G I L + +VSEP N D+ + R+A T + + G T+ + GL+ + Sbjct: 2527 ITPTVKDDGTILLDLYIKVSEPQPYAN--DLYGEKTREAKTKLVISDGNTLTIGGLVSER 2584 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P +P +G LFR + +E+ E+ I T +V P Sbjct: 2585 ENVSVTKLPFFGDLPFIGKLFRAEKTTKEQREMVIFITAKVVAP 2628 >gi|325922191|ref|ZP_08183978.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC 19865] gi|325547310|gb|EGD18377.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC 19865] Length = 674 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 64/359 (17%), Positives = 121/359 (33%), Gaps = 48/359 (13%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V + + + V+ L++ +QV ++ + E+ Sbjct: 292 APAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV-HREQVLVEAIVVEISDTAA 350 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--------------- 255 K++G Q + G + G + G Sbjct: 351 KRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGTRSNNGEEDSVLEQARNVAAQ 410 Query: 256 --------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 F ++ A++ T L+ P++ + + A G + Sbjct: 411 SLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVGQEVPI 470 Query: 296 KTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMP 349 T + ++ D GV L P + + G I L I+ EVS V+A Sbjct: 471 TTGEVLGTANVNPFRTIQRQDVGVQLEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSEL 530 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R+ +T V + +G + L GLL + +Q E +PLL +P LGALFR+ NR++T Sbjct: 531 VFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTN 590 Query: 410 IFIAATPFLVK-PVAMRDLSRP-----DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 + + P +++ + ++ P D + D +A V + G Sbjct: 591 LMVFIRPTIIRDAADAQRMTAPRYNYLRDRQLADGDPEAALDALVRDYLRAQPPQLPAG 649 >gi|91774432|ref|YP_544188.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91708419|gb|ABE48347.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 539 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 65/326 (19%), Positives = 125/326 (38%), Gaps = 36/326 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 A + + + + N +KV ++ + + QV ++ +I EV + Q G Sbjct: 214 AATVIASPETGIISVRATNRQHEKVQEFLDKVMDSARRQVLIEASIVEVTLNDTFQAGID 273 Query: 217 HSITGSSS------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 S G+ G S FSV + L L + + Sbjct: 274 WSRLGNGFNMRSELGLSSVLTPAGIAGTAGTSVPFSVGYSSTNSDIDFSLRLLRQFGDTK 333 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-------------THDYGVVLH 317 L+ P L ++ Q+A +Y T+ S +V T GVV+ Sbjct: 334 VLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGTVQGSANLQAVTTTPNTVPVGVVMS 393 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------------MPSYRVRKADTTVELPS 364 TP + G + + ++ +S + V+ + +P +VR+ ++ +++ S Sbjct: 394 VTPQINDSGLVNINVRPTISRVLGYVDDPNPQLAAVTPPIVSRIPQIQVRELESMLQINS 453 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T VL GL++D+IQQ + +P ++K+P++G LF +TE+ I P +++ ++ Sbjct: 454 GNTAVLGGLMQDNIQQATDKVPGIAKVPLVGKLFTARSNFNVKTELVIFLRPIVIRNASL 513 Query: 425 RDLSRPD-DHYSVEDDAKAFFFNRVN 449 Y + VN Sbjct: 514 ESDELASYKQYLPAQQLQRLIDESVN 539 >gi|154246049|ref|YP_001417007.1| general secretion pathway protein D [Xanthobacter autotrophicus Py2] gi|154160134|gb|ABS67350.1| general secretion pathway protein D [Xanthobacter autotrophicus Py2] Length = 767 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 65/291 (22%), Positives = 125/291 (42%), Gaps = 32/291 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ T+AEV + G Q +T G ++ + S+ D ++ VL F Sbjct: 486 QVAIEATVAEVTLNDTLAYGVQFYLTSKDLGLGRNNGSVLNT-LSSDITDQAINRVLPGF 544 Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------S 300 + +L AL T ++ L+ P++ + Q A+ G + T S S Sbjct: 545 NLLVGRENQPRAILDALHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATVLSSS 604 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSY 351 +T ++ + G++LH P V G++ L I+ E+S P+ Sbjct: 605 NTVVNTIEYKNTGIILHVVPRVNVNGQVRLEIEQEISNVTQSDPTTSGTSSNSTGLTPTV 664 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 RK + + + SG T++LAGL+ + +++G+P+L +IP +G F ++ + TE+ Sbjct: 665 SQRKVKSVIAVASGQTVLLAGLISERHNGVRQGVPILDQIPGVGDAFAHTNGTVKRTELI 724 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 I P +++ D ++V ++ +A V + G +A Sbjct: 725 IFIRPQIIRDNV--------DAHTVAEELRAKLRGTVTTLPGGPQAPLGAR 767 >gi|254228227|ref|ZP_04921656.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio sp. Ex25] gi|151939300|gb|EDN58129.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio sp. Ex25] Length = 624 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 61/332 (18%), Positives = 118/332 (35%), Gaps = 43/332 (12%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 + + L+R ++ +V S+ V T S + + + Sbjct: 210 TITVPGIASVLKRVVSGVQTQVTSASNKEVTS--SDTPVKSNKTASV----------HGG 257 Query: 177 ANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQHS 218 A ++ +N + + Q ++V +I ++ + L Q+G Sbjct: 258 ATVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWR 317 Query: 219 I---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272 G++ D V+ G + K +LD + + LE + + + Sbjct: 318 AGVSVGNNRIVDIKTTGDVSSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESQGSAQVV 377 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----R 327 + PTL A + K V T A + YG +L P ++ + Sbjct: 378 SRPTLLTQENVEAVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPK 435 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I L + E + D+PS R + T + G ++++ G+ +D++ +PL Sbjct: 436 INLSLHLEDGAKITDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPL 495 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L IP LGALFR++ + T P +V Sbjct: 496 LGDIPYLGALFRSNTNTKRRTVRMFILEPRIV 527 >gi|74316224|ref|YP_313964.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans ATCC 25259] gi|74055719|gb|AAZ96159.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans ATCC 25259] Length = 745 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 94/265 (35%), Gaps = 28/265 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADF 234 ++ L++ QV ++ + +++G + G + + +A Sbjct: 476 GLLARLDVPAR-QVMIEARVVIADSLWSRELGVRLGTRLFKATGRDNIGVGGTLNESASI 534 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALER---------------ATAIRTLAEPTLTA 279 G + + + + L + L+ P + Sbjct: 535 AAGGTPTVTPQVELGTVGAAAGQIAMSLLNASNGNLLSLELSALEADNRGKILSNPRVMT 594 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + + A +G Q + T ++ +VT D + L P +L+ + + I+ + Sbjct: 595 SNQKPAVILNGTQIPFITPGTANSPATVTFKDAFLCLLVDPQILNNDALIMTIEVQKDAI 654 Query: 340 VIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 A P+ R+ T V + +G T+VL G+ + +P L +P LG Sbjct: 655 DTANAAVGADIIAPAIATRRIKTQVRVNNGETLVLGGIFDQTEFNNVDKVPFLGDVPGLG 714 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 LF+ + ++TE+ + TP ++ Sbjct: 715 NLFKRTNKQDQKTEMIVFITPRILD 739 >gi|308125809|ref|ZP_05777658.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus K5030] gi|308111516|gb|EFO49056.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus K5030] Length = 604 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194 V V + V+T + E ++ + + A ++ +N + + Sbjct: 199 VGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 258 Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236 Q ++V +I ++ + L+Q+G G++ D Sbjct: 259 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDIKTTGDVDN 318 Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V+ G S K +LD + + LE + + ++ PTL A + Sbjct: 319 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 378 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348 K V T A + YG +L P ++ I L + E + D+ Sbjct: 379 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 436 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T Sbjct: 437 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 496 Query: 409 EIFIAATPFLV 419 P +V Sbjct: 497 VRMFIIEPRIV 507 >gi|9630755|ref|NP_047359.1| maturation protein [Enterobacteria phage If1] gi|6136220|sp|O80300|G4P_BPIF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|3676288|gb|AAC62158.1| maturation protein [Enterobacteria phage If1] Length = 429 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 11/234 (4%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I E F S S GG F G+ + Sbjct: 197 RTQVLVESVIFETTASDGFDFSFAAGDPSGSPVAGGINTDRLTSVLSSTGGSF---GIFN 253 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGAT 305 L ALE ++ L+ P + +SGQ +FT+G + T + Sbjct: 254 GNILGLSLKALETSSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGRVTGEAANVNNPFQ 313 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 ++ HD G+ L P V G + + + T A D+ R TTV+L SG Sbjct: 314 TIERHDVGISLKVVPVVTPGGLLIMDVSTNADSISDSQTASDI-ITNTRSISTTVQLKSG 372 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L G++ + +P +SKIP++GALF + N + ++I +V Sbjct: 373 QTVLLGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTLYILIRARVV 426 >gi|242281104|ref|YP_002993233.1| general secretion pathway protein D [Desulfovibrio salexigens DSM 2638] gi|242123998|gb|ACS81694.1| general secretion pathway protein D [Desulfovibrio salexigens DSM 2638] Length = 671 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 60/341 (17%), Positives = 125/341 (36%), Gaps = 44/341 (12%) Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS---SKK 183 + +A ++ + + G + A + S + + S + + + + Sbjct: 284 IEAVVAGEVLKSLISGGGIPSEGNSKNSVAGDSAAKSSSSRDTSSASSNDSGGVQVSADE 343 Query: 184 VMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 N L + DQV ++ + E D K+ G + G Sbjct: 344 ATNTLIVMAPTDQLSQIDNFVEQLDQAQDQVYIEALVLETTLDHAKEFGVEWQGGIDLGG 403 Query: 226 PSKSFA---------ADFGGKFVSEGGDFSVKGVLDR--------FSFETVLHALERATA 268 + + + + G +S+ + D + +++ + AT Sbjct: 404 SVATLGYTKAKDSNLSAYASNPSNVPGGYSMGVLGDTISYAGRSFPTIGALVNFTKSATD 463 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVL- 323 ++ P + + A G YKT SST +V D G+ L TP + Sbjct: 464 FNLISAPQIMTLDNAEAEIFVGQNRPYKTGQSSTSGDAVVSTYEYKDVGIKLKITPRINR 523 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G + L++ + + ++P RK DTTV L G T+V+ GL++ D + + Sbjct: 524 EDGLVKLKVYQTYNTVSEA-STTELPITNDRKTDTTVLLADGSTMVIGGLIRADHTRTEA 582 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G+P LS +P+LG LF+ + + + + + + +++ Sbjct: 583 GVPYLSDLPLLGWLFKTTSNSGNKNTLMVFLSARIIQTTEG 623 >gi|317487416|ref|ZP_07946204.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6] gi|316921348|gb|EFV42646.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6] Length = 541 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 69/363 (19%), Positives = 133/363 (36%), Gaps = 70/363 (19%) Query: 101 LIGHDGKQMLNLDI-LIERDIAHLEMTLRRFIADSN--------IRVEMVSDTVVLHGMV 151 LI + + + + A L+ +L +F+ +N I V+ S+ +++ Sbjct: 170 LISRQNSPLTVSVVSVRYAEAAALQQSLTKFLTAANGQGGQAAVIEVDEHSNALIIQ--- 226 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 T QD QR + L + QV LK I E ++ + Sbjct: 227 ATEQDQQRIIRLVDNLD----------------------RPRPQVHLKAYIVEATKETAR 264 Query: 212 QIGFQHS--------------ITGSSSGPSKSFAADFGGKFVSEGGDFS----------- 246 ++G Q GS + ++ GG + G Sbjct: 265 ELGVQWGGVWRSGSFNNGNHAWIGSGASGTQGQDPVTGGLTGTHGSGLGGAPFGLDYSGI 324 Query: 247 ----------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G + E L+ +E+ I L+ P++T + + A +G + Y Sbjct: 325 ASNDMGSLGFLFGKVGGSMLEVQLNLMEKDGNINILSSPSITTLDNKMAYTENGEKVPYV 384 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 + S+ G V D + L TP V+ + L++ + E + P ++ Sbjct: 385 ST-SNMGDREVKFEDAVLRLEMTPNVIDGDNLKLKVLVKKDEVDTSRSVDGNPFIIKKQT 443 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +TT+ + +G T+V++GL K+ + G+P L IP +F + + E+ I TP Sbjct: 444 ETTLIMRNGETVVISGLTKEKGTDINAGVPGLKDIPGGKYVFGHESKGKTMEEVLIFITP 503 Query: 417 FLV 419 ++ Sbjct: 504 EIL 506 >gi|256829756|ref|YP_003158484.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028] gi|256578932|gb|ACU90068.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028] Length = 693 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 92/241 (38%), Gaps = 19/241 (7%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------SFAADFGGKFVSEGG 243 E QV ++ + + + +G + + ++ + A G ++ Sbjct: 458 RAERQVMIEARLVYATDEFQRSLGVKWGTSYATETAANLPSEQWRGTFASTGLNAINTVN 517 Query: 244 DFSVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 ++ G + +F + + L E ++T++ P + ++ A G L Sbjct: 518 GITLGGTIGKFLGEDLFALDAALQLGEANNLVKTISSPRILTLNNNRAEIQ-QGTKLATA 576 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 S +G T+ + + + P + ++ L + E+S+ + D ++ Sbjct: 577 TESESGGTTTEYEEAVLKISVLPQITPDNKLILDL--EISDDSPKSDGRD---IDTKQTK 631 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + + TIV+ G+ K IP L +P LG LF+N+ + + E+ I P Sbjct: 632 TKMMVSDRETIVIGGVQKTTETSNTNQIPGLGDVPGLGWLFKNTYDAKSKAELLIFIQPR 691 Query: 418 L 418 + Sbjct: 692 I 692 >gi|262394108|ref|YP_003285962.1| type III secretion system outer membrane pore YscC [Vibrio sp. Ex25] gi|262337702|gb|ACY51497.1| type III secretion system outer membrane pore YscC [Vibrio sp. Ex25] Length = 604 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 115/320 (35%), Gaps = 19/320 (5%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV---ELSETFLSQSGR 173 + + L+R ++ +V S+ V + +V E + Sbjct: 190 TITVPGIASVLKRVVSGVQTQVTSASNKEVTSSDTPVKSNKTASVHGGATVEAEPGLNAI 249 Query: 174 NQYANSSSKKVMNLLNIAGED-QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPS 227 + + L + Q ++V +I ++ + L Q+G G++ Sbjct: 250 IVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVD 309 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284 D V+ G + K +LD + + LE + + ++ PTL Sbjct: 310 IKTTGDVSSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVE 369 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339 A + K V T A + YG +L P ++ +I L + E Sbjct: 370 AVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPKINLSLHLEDGAK 427 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + D+PS R + T + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 428 ITDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 487 Query: 400 NSRFNREETEIFIAATPFLV 419 ++ + T P +V Sbjct: 488 SNTNTKRRTVRMFILEPRIV 507 >gi|312880051|ref|ZP_07739851.1| type II and III secretion system protein [Aminomonas paucivorans DSM 12260] gi|310783342|gb|EFQ23740.1| type II and III secretion system protein [Aminomonas paucivorans DSM 12260] Length = 576 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 99/249 (39%), Gaps = 22/249 (8%) Query: 194 DQVTLKVTIAEVRRDILKQIGF-------QHSITGSSSGPSKSFA-----------ADFG 235 QV L+ I E+ D +++ ++G + A+ Sbjct: 313 QQVMLQARIVEIGDDGKEELESLISRVYKNWWFAFDNNGGMIGYTRINKPDLYDDDANDN 372 Query: 236 GKFVSEGGDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G D SV +F + L ALE A R LA P++ G+ A Sbjct: 373 RIVKPGGLDLSVVAQNPDLNFLDAGLRALETANKGRMLASPSVVVHDGKKAKIALTENVK 432 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSY 351 Y + G + + G + FTPTV I + + EV++ + G +P Sbjct: 433 YISARDQAGNPTYSEERVGPTIEFTPTVGRDRVITMEMTLKTGEVTKYIRGGMGEQVPQT 492 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ ++TV + +G V+ GL +D + IP+L IP+LG LFRN + TE+ Sbjct: 493 STREVNSTVRIRNGEPFVVGGLFRDGQTHSENKIPILGDIPLLGELFRNRTTQKIHTEVA 552 Query: 412 IAATPFLVK 420 + P+L+ Sbjct: 553 MIVIPYLLD 561 >gi|307626976|gb|ADN71280.1| general secretion pathway protein D [Escherichia coli UM146] Length = 421 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 105/245 (42%), Gaps = 12/245 (4%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 +N +++A DQV ++ + E + F + G + GG Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301 F G+ D L A++ + + ++ P + SGQ+ + G + T + Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGES 297 Query: 302 ----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 ++ HD GV L TP V+ G++ L I T A D+ R+ Sbjct: 298 AGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDI-ITNQRQIQ 356 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTV++ G T++L GL+ + +P++SKIP++G +F + + E+ ++I T Sbjct: 357 TTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKAXSNEQRIMYILLTAH 416 Query: 418 LVKPV 422 +++P+ Sbjct: 417 IIRPL 421 >gi|145284361|gb|ABP51942.1| AscC [Aeromonas veronii bv. sobria] Length = 617 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 49/314 (15%), Positives = 101/314 (32%), Gaps = 19/314 (6%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVL---HGMVRTIQDSQRAVELSETFLSQSG 172 + + L + ++D+ +++ + G D + + Sbjct: 212 TDVAAPGVATILAKLLSDAGVQMVNGEGSKAATATSGQAIVQADPSLNAVIVRDAPERMA 271 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 ++ K + +A I ++ + L Q+G + + + Sbjct: 272 MYGKLIAALDKPAARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVIIK 323 Query: 233 DFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G S+ ++ LE + ++ PTL A Sbjct: 324 TTGDRKGIEGGAALGSLVDSKGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHS 383 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAG 346 + K S + YG +L TP V+ G I L + E ++ A Sbjct: 384 ETYYVKI--SGERVAELQGITYGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPNSAGAD 441 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P+ DT + G ++++ G+ +D++ + +P L IP LGALFR+ Sbjct: 442 GIPTISRTVVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRSKDTQTR 501 Query: 407 ETEIFIAATPFLVK 420 + P L+ Sbjct: 502 RSVRLFIIEPRLID 515 >gi|121999034|ref|YP_001003821.1| type II and III secretion system protein [Halorhodospira halophila SL1] gi|121590439|gb|ABM63019.1| type II and III secretion system protein [Halorhodospira halophila SL1] Length = 372 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 60/315 (19%), Positives = 121/315 (38%), Gaps = 20/315 (6%) Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 + E +L + +S A T +++++ L+ Q Sbjct: 49 VHAEAAQLAELLRDETGVLSESGHASVDERTNTLILQDTPARLEEAEQLVRELD-RANRQ 107 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV-------- 247 V ++ I + +++G + ++ +F + G + G Sbjct: 108 VMIEARIVLASGEYSRELGSRLGLSSERGDGHFAFDSLPGSNDAAVGDGLLAELPPVGEG 167 Query: 248 ------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + L A+E R ++ P + Q+A G Q Y+ + S Sbjct: 168 ARLSVSVGEVGERLLQLELSAMEAEGHGRVVSSPRVLTTERQAARIEQGVQIPYQETAES 227 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 GAT+V D + L TP V + L ++ V++ +G +PS + T + Sbjct: 228 -GATAVAFQDAALSLTATPQVTEDDAVSLALR--VTKDAVGQIYEGVPSIDTQAVTTHLR 284 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +G TIVL G+ + + ++ ++ +P L ++P++G LFR + E+ + TP LV+ Sbjct: 285 VQAGETIVLGGVREHEQRKQRQRVPWLGELPLIGWLFRQRMSEQSHHELLVFVTPRLVE- 343 Query: 422 VAMRDLSRPDDHYSV 436 S D + Sbjct: 344 -DGPSSSTAVDDAAP 357 >gi|312794853|ref|YP_004027775.1| general secretion pathway protein D [Burkholderia rhizoxinica HKI 454] gi|312166628|emb|CBW73631.1| General secretion pathway protein D [Burkholderia rhizoxinica HKI 454] Length = 847 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 103/296 (34%), Gaps = 46/296 (15%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPS 227 V++ L+ QV ++ I ++ +G Q +++G Sbjct: 401 NVIDQLDQR-RAQVYIEAVIVDMNATSGANLGIQWQGALLSNNGNNGVYGGSNFNANGSQ 459 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDR------------------FSFETVLHALERATAI 269 G V++ + + F +L AL ++ Sbjct: 460 SIVGLSATGAIVAQDPATAAAQIGPNNLLNNGLNIGLLHRFGKVFGLGGLLQALATSSDT 519 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----------HDYGVVLHFT 319 L+ P L + + A G T S +T + TT D G+ LH Sbjct: 520 NILSTPNLITLDNEEARIVVGQNVPVVTGSYATPTANTTTSVSAFNTFDRQDVGITLHIK 579 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G + L+I E S G + S R +TV G IVL GL++D+ Sbjct: 580 PQISEGGVLKLQIYQEDSAVQQGTQSNPGGVSITKRSIQSTVLADDGEIIVLGGLIQDNY 639 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +P L IP+LG+LFR+ R ++ + + P +V+ + D Y Sbjct: 640 ANGNSKVPWLGNIPVLGSLFRSESKTRTKSNLMVFLRPVIVRDQSTSS-QLALDRY 694 >gi|330719673|gb|EGG98224.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC2047] Length = 419 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 45/273 (16%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI--------------------------TGSSSGP 226 QV L+ I EV Q G S TG ++ Sbjct: 125 RRQVILEAKILEVELSDGFQAGVNWSALAEVGQDKNVIFGTGLTNSVRTINPVTGDTTLT 184 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S+ L+ F ++ L +++ L+ P ++ ++ Q A Sbjct: 185 NTILGTPTATTATSDSVGGVFSAALNLKDFNALIDLLSTQGSVQVLSSPRISTVNNQKAV 244 Query: 287 FTSGGQHLYKTV----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 G + T S+++ +T G+ L TP + G + L I V Sbjct: 245 IKVGTDEFFVTEISSETTTNTSSTTSTDVELTPFFSGIALDVTPQISEEGEVVLHIHPTV 304 Query: 337 SEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE P+ +R+ D+ V +G +V+ GL+++ P Sbjct: 305 SEVTDQTKTVVGPNGDLVLPLALSSIRETDSIVRARNGQVVVIGGLMQNSSTDNNAKTPF 364 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L +P+LG FR R + ++E+ I P + Sbjct: 365 LGDLPLLGNAFRQKRQSSVKSELVILLKPIIAD 397 >gi|258593213|emb|CBE69552.1| exported protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 726 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 77/440 (17%), Positives = 139/440 (31%), Gaps = 45/440 (10%) Query: 56 KVIILQVPVD-VQDVLV---SDPTKADV----VVHSPRTMYLFGKNVGQANVILIGHDGK 107 K + + D +Q + V + AD+ R + G G G Sbjct: 304 KALDVPTKRDNIQRIFVYFVENAKAADLANTLNTLYGRRDLVRGAAPGT----RPGQTPA 359 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + E VV G V + D + +T Sbjct: 360 RPGVSGPSTTTAPPPPAPGPPPAAPVPPTGAEAAPGEVV--GEVTIVTDEATNALIIKTS 417 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + V QV +++ +A++ + + + S Sbjct: 418 PRNYEIVEATIKQLDIV--------PKQVLIELMLAQITLSDAFDFSLEQVLRSGTIMLS 469 Query: 228 KSFAADF--------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 V+ F+ +D+ F VL+ L T + LA P L Sbjct: 470 SVHGGPAAAAIAAFKNPSGVAPPSGFTFTTFVDKEQFRLVLNNLASVTKVEVLANPHLLT 529 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSV-------TTHDYGVVLHFTPTVLSPGRIGLRI 332 + + A+ G + T + S G + V D G++L P V + L I Sbjct: 530 ANNKEANIQIGQEVPIPTGTQSVGTSDVANVFSTFQRKDIGIILKIKPHVNEKRLVTLDI 589 Query: 333 QTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 +TE + V S+ T + + ++V+ G+++ D + GIP LS Sbjct: 590 ETENTSVAGEVPDALQGGASFNKTTTKTALVVQDSQSLVIGGIIRTDKSKGYSGIPFLST 649 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IP+LG LFRN+ + TE+ I TP ++ + + + + R+ + Sbjct: 650 IPLLGYLFRNTSEDLIRTELVILITPHVI--ASPEEGQALTKRFRERVET----LERLMQ 703 Query: 451 IYGPKEASEVEGQNYKGAIG 470 + + KG G Sbjct: 704 SSPTSPSGLAPKLDDKGKDG 723 >gi|217977094|ref|YP_002361241.1| general secretion pathway protein D [Methylocella silvestris BL2] gi|217502470|gb|ACK49879.1| general secretion pathway protein D [Methylocella silvestris BL2] Length = 805 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 76/327 (23%), Positives = 137/327 (41%), Gaps = 29/327 (8%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R + + NQ + +K + L+ + QV + +TIAEV + G Q Sbjct: 488 RIMADAANNSVVIYANQESYRIIEKALEQLD-RPKLQVAIDLTIAEVTLNDTLNYGVQFF 546 Query: 219 ITGSSSGPSKSFA----ADFGGKFVSEGGDFSVKGVLDRFSFE--------TVLHALERA 266 + S+ G + G GG S G L F+ +++AL + Sbjct: 547 LGSSNLGLGANNGFVTNTAAGVPLAQTGGVASAAGTLPGFNLTIGNALSPRAIINALHQY 606 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTP 320 T ++ L+ P+L + Q A+ G + +T S++ ++ + G++L P Sbjct: 607 TDVKVLSNPSLVVVDNQVATLQVGDEIPIQTGSATVLSANNAVVNTIDYKNTGIILRVQP 666 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 V G + L ++ E+S G P++ RK +++ + SG T++LAGL+ D + Sbjct: 667 RVNFNGNVSLDVEQEISNQAGTSALG--PTFSQRKVKSSILVASGQTVLLAGLISDGVNG 724 Query: 381 LKEGIPLLSKIPILGALFRNSRFN-REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 K GIP+ +IP+LG LF NS TE+ I P +++ D + E+ Sbjct: 725 TKAGIPVADQIPVLGNLFNNSSNRLVSRTELIIFIRPQIIRDGV-------DASFVAEEL 777 Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYK 466 N+V IY + + + + Sbjct: 778 RSKLRGNKVGDIYPTGAVTPIPLRALQ 804 >gi|253997512|ref|YP_003049576.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8] gi|253984191|gb|ACT49049.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8] Length = 719 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 86/215 (40%), Gaps = 3/215 (1%) Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + Q + +SS ++ + +S+ V L A+E Sbjct: 502 THNGAVQTTLTNGGVFTSSDGQPDLMSNLAVANAAGSIAYSIYNVAAGLLLNLELTAMET 561 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + ++ P + + A +G + Y SS+GAT+V + L TP + Sbjct: 562 DQRGKIVSSPRVITANQHKAKIAAGTEIPYLQA-SSSGATNVAFKPAVLSLEVTPQITPD 620 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +I + + ++ + +G +PS + +T V + +G T VL G+ + + + Sbjct: 621 EKIIMEL--DIKKDKVGQIFNGVPSIDTQNINTQVLVGNGETAVLGGIFEQIERDDVSKV 678 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 P +P+ G LF+ ++TE+ I TP +V Sbjct: 679 PFFGDLPLFGNLFKKKTRQNDKTELLIFITPKIVD 713 >gi|91224449|ref|ZP_01259711.1| putative type III secretion protein YscC [Vibrio alginolyticus 12G01] gi|91190791|gb|EAS77058.1| putative type III secretion protein YscC [Vibrio alginolyticus 12G01] Length = 624 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 59/332 (17%), Positives = 116/332 (34%), Gaps = 43/332 (12%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 + + L+R ++ +V S V + ++ + + Sbjct: 210 TITVPGIASVLKRVVSGVQTQVASAS-----SKEVTSPDKPVKSNKTASVH-------GG 257 Query: 177 ANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQHS 218 A ++ +N + + Q ++V +I ++ + L Q+G Sbjct: 258 ATVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWR 317 Query: 219 I---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272 G++ D V+ G + K +LD + + LE + + + Sbjct: 318 AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVV 377 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----R 327 + PTL A + K V T A + YG +L P ++ Sbjct: 378 SRPTLLTQENVEAVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPE 435 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I L + E + D+PS R + T + G ++++ G+ +D++ +PL Sbjct: 436 INLSLHLEDGAKIADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPL 495 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L IP LGALFR++ + T P +V Sbjct: 496 LGDIPYLGALFRSNTNTKRRTVRMFILEPRIV 527 >gi|269967259|ref|ZP_06181323.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B] gi|269828115|gb|EEZ82385.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B] Length = 624 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 59/332 (17%), Positives = 116/332 (34%), Gaps = 43/332 (12%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 + + L+R ++ +V S V + ++ + + Sbjct: 210 TITVPGIASVLKRVVSGVQTQVASAS-----SKEVTSPDKPVKSNKTASVH-------GG 257 Query: 177 ANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQHS 218 A ++ +N + + Q ++V +I ++ + L Q+G Sbjct: 258 ATVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWR 317 Query: 219 I---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272 G++ D V+ G + K +LD + + LE + + + Sbjct: 318 AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVV 377 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----R 327 + PTL A + K V T A + YG +L P ++ Sbjct: 378 SRPTLLTQENVEAVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPE 435 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I L + E + D+PS R + T + G ++++ G+ +D++ +PL Sbjct: 436 INLSLHLEDGAKIADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPL 495 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L IP LGALFR++ + T P +V Sbjct: 496 LGDIPYLGALFRSNTNTKRRTVRMFILEPRIV 527 >gi|171911307|ref|ZP_02926777.1| putative general secretion pathway protein [Verrucomicrobium spinosum DSM 4136] Length = 821 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 65/359 (18%), Positives = 116/359 (32%), Gaps = 97/359 (27%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217 A ++ T Q + + L A Q+ + EV + ++GF Sbjct: 426 ATFVAATSQLIVRNTQPNLDQVEAFVEGLTKAVPQQIYITTKFVEVSQKNTDELGFDWLL 485 Query: 218 ---SITGSSSGPSKSFAADFGGKFVSEG-------------------------------- 242 I G + + A F +G Sbjct: 486 GQFDIGGRTFASGGTAATSSNYSFTQDGTAIGGYSVTSGNRSGSSAIAADSIDGLISGQS 545 Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G F++ GV F+ + AL + + ++ P++T SGQ A+ + +Y Sbjct: 546 QASSVAPGVFTLAGVFTDPQFQVTIRALSQKKGVDLMSAPSVTTRSGQRATVEVIREFIY 605 Query: 296 KTVSSS----------------------------TGATSVTTHDYGVVLHFTPTVLSPG- 326 T T T+ GV L P + G Sbjct: 606 PTEFDPPQIPQNFGATSSTSTTGTSSTSSFPVTPTTPTAFEMRPVGVRLEVDPVIGPDGY 665 Query: 327 RIGLRIQTEVSE------------------------PVIGVNAGDMPSYRVRKADTTVEL 362 I L + EV+E + N + P + RK T V + Sbjct: 666 TIDLNLAPEVTEFEGFINYGSPINTASTDALGNPTTVTLTENKIEQPVFSTRKVTTAVTV 725 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G T+ + GL+++D+Q +++ +P+L +P LG LF++ + + + I T L+ P Sbjct: 726 WDGQTVAMGGLIREDVQDVEDKVPILGDLPFLGRLFQSKAEDHFKRNLMIFVTAKLIDP 784 >gi|332186824|ref|ZP_08388566.1| general secretion pathway protein D [Sphingomonas sp. S17] gi|332013157|gb|EGI55220.1| general secretion pathway protein D [Sphingomonas sp. S17] Length = 739 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 72/460 (15%), Positives = 147/460 (31%), Gaps = 70/460 (15%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80 + + I +N+ + + + +I++ L+ + +++ V + + AD Sbjct: 216 STGVSVVAIDSSNSIALRGDPSSVARFAQIALDLDNKA--KSGTEIRVVFLQN---ADAE 270 Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140 P + + VGQ + + + A +R + + + Sbjct: 271 QLLP----VLQQLVGQTPDPVQETTLSRGSFTQTNNQAGSAAGTSIAQRVQPVAQPQAQN 326 Query: 141 VSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 +G I + +V+ L++ +Q Sbjct: 327 APGAGGQNGQQPAISTQGGRTAAVVTRFVGANAIVIAGPADIQRQIGEVIRQLDVR-REQ 385 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK------------------ 237 V ++ +AEV +++G Q + S G + Sbjct: 386 VLIEAIVAEVSDQTARRLGAQFLLGSLSGGAFAASTYGNTAPNILQIAGAVGAQTLGGTR 445 Query: 238 -------------------------------FVSEGGDFSVKGVLDRFSFETVLHALERA 266 + GG G + F +++A++ Sbjct: 446 TIVTAPDGTRTETNVPNPAFSQLTQSAVQSILGTTGGFAGWGGQVGDTVFGAIINAVKSD 505 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPT 321 T L P + + Q A G + T + +V + G+ L P Sbjct: 506 TTSNLLQVPHIITLDNQQAHSLVGQEIPVTTGQALSNNFDNAFRTVQRQNVGIQLDVKPQ 565 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 V + G + L ++ EVS V++ + R + G V+ GLL D+ ++ Sbjct: 566 VNAGGSLKLYVRLEVSSIAGPVSSNNSELILNKRAFENVFTPDDGQITVIGGLLDDNERR 625 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 E IPLL IP LGALFR+ +R +T + + P +++ Sbjct: 626 TIEKIPLLGDIPGLGALFRSKARSRSKTNLMVFIRPTILR 665 >gi|313680282|ref|YP_004058021.1| type II and III secretion system protein [Oceanithermus profundus DSM 14977] gi|313152997|gb|ADR36848.1| type II and III secretion system protein [Oceanithermus profundus DSM 14977] Length = 518 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 130/305 (42%), Gaps = 12/305 (3%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L ++ A S I+VE + + + + L +G + + Sbjct: 220 LAEAMQARQAQSQIKVEAGAGEQQVQATIPEKSTISIVADTRTNTLIVTGTAKQLELVEE 279 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + L QV ++V I EV + +++ +G + + + S F + Sbjct: 280 LIKKLDF--PVQQVNVQVRIQEVTQTLVRNLGLKWNTISGGNIVSSIVDNGLSLIFDA-- 335 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 L + L ALE+ RT+ + +T ++ Q+ SG K V Sbjct: 336 -----TRSLASLNIVATLEALEKQGLSRTVNDSNITVLNNQTGFIQSGFTIFVKRVVGDK 390 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVE 361 +D GV++ TP + + G+I L++++EVS+ GD+ +K++TT+ Sbjct: 391 VEKV--PYDIGVIVRVTPQITADGQIVLKVESEVSDIKERNPVDGDVDVLSKQKSETTLR 448 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L +G T+VL GL+K + +G+P+L IP+LG+LF+ + N E+ E+ I T +V Sbjct: 449 LDNGQTVVLGGLIKTKRDKTTQGVPVLMHIPVLGSLFKQTTVNNEDNELLIVITANIVND 508 Query: 422 VAMRD 426 Sbjct: 509 ATAAA 513 >gi|167589893|ref|ZP_02382281.1| type II and III secretion system protein [Burkholderia ubonensis Bu] Length = 773 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 68/349 (19%), Positives = 134/349 (38%), Gaps = 35/349 (10%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V T+ ++ +A + + + L D + LR+ I ++ V+ Sbjct: 234 KVLDRHTLLIYPSQPDKA-----RNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVD 288 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + VV+ TIQ + ++V+ L+I + VTL Sbjct: 289 ERVNAVVMRDTPETIQVA------------------------ERVVMGLDIPQSE-VTLD 323 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 V + EV + +G Q+ S + V + Sbjct: 324 VQVLEVNMNDSLDLGVQYPGKVQFSALGGVEGGALTLGDLLRLNRDRVGVASESGGLALA 383 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLH 317 + L++ +TLA P + + + A+ G + T +++ G SV+ D G++L Sbjct: 384 IDMLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVTTTNANGVVTESVSYQDVGLMLK 443 Query: 318 FTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P + + +++ EVS + R A+T + +G T +LAGL+ Sbjct: 444 VEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAYALGTRNAETLMTAKNGETQILAGLV 503 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 K + + G+P +S +P++G LF ++ + E TEI + TP + + + Sbjct: 504 KRNESENIAGLPGMSGLPVIGRLFGSNGRSNERTEIVLLITPHIERNLD 552 >gi|54124974|gb|AAV30242.1| YscC [Aeromonas hydrophila] Length = 614 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 53/311 (17%), Positives = 99/311 (31%), Gaps = 19/311 (6%) Query: 119 DIAHLEMTLRRFIADSNIR-VEMVSDTVVL--HGMVRTIQDSQRAVELSETFLSQSGRNQ 175 D + L R ++D+ ++ V V G D L + Sbjct: 215 DAPGVATILSRLLSDAGVQMVNGEGAKGVGTNSGQAIVQADPSLNAVLVRDAPERMAMYG 274 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 ++ K + +A I ++ + L Q+G + + + G Sbjct: 275 KLIAALDKPAARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVIIKTTG 326 Query: 236 G--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 S+ ++ LE + ++ PTL A + Sbjct: 327 DRKGIEGGAALGSLVDSRGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHSETY 386 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMP 349 K S + YG +L TP V+ G + L + E S+ +P Sbjct: 387 YVKI--SGERVAELKGITYGTMLRMTPRVIQLGDRPEVSLSLHIEDGSQKPNSSGLDGIP 444 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + DT + G ++++ G+ +D++ + +P L IP LGALFR+ Sbjct: 445 TISRTVVDTIARVGHGQSLLIGGIYRDELSESLSKVPFLGDIPYLGALFRSKESQTRRQV 504 Query: 410 IFIAATPFLVK 420 P L+ Sbjct: 505 RLFIIEPRLID 515 >gi|192358819|ref|YP_001982858.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107] gi|190684984|gb|ACE82662.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107] Length = 578 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 61/281 (21%), Positives = 102/281 (36%), Gaps = 43/281 (15%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--- 241 + ++ + QV L+ I EVR + G G S S Sbjct: 275 LERSELSAKRQVILETKILEVRLSEGFEAGVNWGAISGQLGYSYGSGRGTISASDSLEMN 334 Query: 242 --------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 GG G++ +L LE A++ L+ P ++ ++ Sbjct: 335 YGPGFQMTDATRTITESSEYGGKDLFAGLVQVADITKLLSLLETQGAVQVLSSPRVSTVN 394 Query: 282 GQSASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGL 330 Q A G + T SS T+ ++ G+ L TP + G + L Sbjct: 395 NQKAVIRVGYDEYFVTGISSNTTTNAAAITNTPNIELSPFFSGISLDVTPQISEAGEVIL 454 Query: 331 RIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLKDDIQQL 381 I VSE + + +R++D+ V+ +G IVL GL+ + +Q Sbjct: 455 HIHPIVSEVTDQLKVFTVGDENFSLPLALRGIRESDSIVKAANGQVIVLGGLMTESNRQT 514 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 PLL IPI+ +LFR ++ +TE+ I P +V Sbjct: 515 DGKRPLLGDIPIVNSLFRTKNKSKSKTELVILLRPIVVDDT 555 >gi|82703698|ref|YP_413264.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411763|gb|ABB75872.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 749 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 78/456 (17%), Positives = 168/456 (36%), Gaps = 64/456 (14%) Query: 2 RYLQRTFFTMMSIFLFSSNP-----SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56 R +R + + + ++ + K P E + + + I++ +K Sbjct: 152 RDARRLIQRITEMEVQAAQAGPILKTAFKKPITLEFRDTGLKSVFEILARTGGINVVFDK 211 Query: 57 VIILQVPVDVQDVLVSDPTKADV------------VVHSPRTMYLFGKNVGQANVILIGH 104 + + V + DV V + ++ ++ + Sbjct: 212 DVKQDSK---TTIFVRETNIEDVFKLLLVTNQLAHKVLNENSVLIYPNTPAK-----QKE 263 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 + M+ + D+ + ++ I ++ V+ + V+ A+ L+ Sbjct: 264 YQELMVRSFFVTNTDVKQMVAMVKGLIKTKDMHVDEKLNLFVMKDTP-------EAIRLA 316 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SIT 220 E ++ + + +V L+V + E+ R+ L +G Q+ ++ Sbjct: 317 ERLVTLNDL------------------ADPEVMLEVEVLEIGRNKLLNLGLQYPEKINVN 358 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET----VLHALERATAIRTLAEPT 276 ++ + A + G + + + + F +++ ++ I LA P Sbjct: 359 YLTAASAAGAAPFPPFQISRAGVNGNGSNLDNLIGFVANPALIVNLKQQDGLINVLANPR 418 Query: 277 LTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + + + A G + T +++ A+SV+ D G+ L T+ + +++ Sbjct: 419 IRVKNREKAKVLIGDKVPVVTTTAAANVGVASSVSYLDVGLKLDVESTISLQDEVSMKVS 478 Query: 334 TEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVS V G R A TT+ L G T VLAGL+ DD + +P L++ Sbjct: 479 LEVSNIVKEVPVTGGGLAYQVGTRTAATTLALKDGETQVLAGLISDDERTTLSKVPGLAE 538 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +P +G LF N R +TEI + TP +V+ +A Sbjct: 539 LPWIGKLFINKNVVRNKTEIALLITPRIVRNIARPA 574 >gi|254522174|ref|ZP_05134229.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14] gi|219719765|gb|EED38290.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14] Length = 638 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 100/284 (35%), Gaps = 54/284 (19%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------------- 225 DQV ++ I +++G + I+GS Sbjct: 350 RPVDQVLIESRIVIATDTFARELGAKFGISGSRDNVYFSGDLESNRKTRQSQADTSAANA 409 Query: 226 ----------------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 ++ + + G ++ + + + L A+ Sbjct: 410 KAYRDWEAGGSVGPAPVPLLPAITRGLNFNLPAASTATPGSLALSILNAGYLLDVELSAM 469 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFT 319 + ++ P + + + A G + Y T+S +V + + L T Sbjct: 470 QEEARGEVISNPRVVTTNQREALIKQGKEIGYVTISGGGTGGVATPNVQFKEVVLELKVT 529 Query: 320 PTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 PT+ + R+ L +Q EV + G +P R+ +T V + G T+V+ G+ + Sbjct: 530 PTITNDNRVFLNMQLKKDEVERLIQLQGYGTVPEINRREVNTAVLVDDGQTVVIGGVYEF 589 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +P L +P LG LF+ ++++ E+ + TP +++ Sbjct: 590 TDRSSVSKVPFLGDVPFLGNLFKKRGRSKDKAELLVFVTPKVLR 633 >gi|312883863|ref|ZP_07743580.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368321|gb|EFP95856.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC BAA-2122] Length = 619 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 101/274 (36%), Gaps = 31/274 (11%) Query: 175 QYANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQ 216 A+ ++ +N + + Q ++V +I ++ + L Q+G Sbjct: 251 SAASVEAEPGLNAIIVRDTQARLPLYRQLVAQLDQPQSRIEVALSIVDISANNLSQLGVD 310 Query: 217 HSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIR 270 G++ + D V G + +LD + ++ LE + + Sbjct: 311 WRAGVSVGNNKIVDINTTGDVTNGDVLLGSGQTFNSLLDATNLNFLLAQINLLESQGSAQ 370 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---- 326 ++ PTL A ++ K V T A + YG +L P ++ Sbjct: 371 VVSRPTLLTQENVEAVLSNSTTFYVKLVGRETAA--LDEVTYGTLLRIVPRIVGDRFAER 428 Query: 327 -RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + +PS R + T + G ++++ G+ +D+I Q + Sbjct: 429 PEINLSLNLEDGAQIPDNVIDGVPSIRKTEISTLATVKQGQSLLIGGVYRDEISQQLRKV 488 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 PLL IP LGALFR++ T P +V Sbjct: 489 PLLGDIPYLGALFRSTNDITRRTVRMFIIEPRIV 522 >gi|258406319|ref|YP_003199061.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692] gi|257798546|gb|ACV69483.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692] Length = 719 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 99/276 (35%), Gaps = 18/276 (6%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + R + + T + + V++ L+ E QV ++ I + + +G Sbjct: 450 SERGRIGQDARTNTLIVSDTRDNIRKVRSVIDRLD-RPEPQVLIEARIVYAKDAFKRSLG 508 Query: 215 FQHSITG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + S V+ G +D F + L Sbjct: 509 VSLAGEYYDDVGAVGQYEKSLSAGVLQGFTPEVSTVNMQGALDKISGIDLFELDAQLKLG 568 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E +T++ P L ++ Q A S G + S +G T + + + L P + Sbjct: 569 ELKGVTKTISSPRLVTLNNQQAEI-SQGIKIANESESESGGTDIEYTEATLKLAVQPQIT 627 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 ++ L + ++++ N D R A T + + + T+VL G+ + K Sbjct: 628 PDDKVILDL--DIADDSPTENGED---IETRTARTKLLVENQETVVLGGVYQVIENNEKN 682 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P+LG LF+ N E E+ I P ++ Sbjct: 683 QVPGLGDVPLLGWLFKTDNVNNENRELLIFIRPTIL 718 >gi|330863522|emb|CBX73638.1| general secretion pathway protein D [Yersinia enterocolitica W22703] Length = 577 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 12/247 (4%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----S 227 + +V+ L+I QV ++ I E + +G Q + + Sbjct: 330 TADPKVMKELDQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKT 388 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 S + + + +++ + AL + LA P++ + A F Sbjct: 389 NSIQTNNNSGNPIPMMMAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEF 448 Query: 288 TSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G + T + +T S++ GV+L P + + L I+ EVS Sbjct: 449 NVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSS 508 Query: 344 NAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + R + V + SG T+V+ GLL I ++ +PLL IP +G LFR Sbjct: 509 DVNANNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQ 568 Query: 401 SRFNREE 407 S+ ++ Sbjct: 569 SKERLKK 575 >gi|291333680|gb|ADD93369.1| type II and III secretion system protein [uncultured marine bacterium MedDCM-OCT-S01-C143] Length = 437 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 58/305 (19%), Positives = 107/305 (35%), Gaps = 58/305 (19%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSK 228 + S ++++ L++ QV ++ I EV Q G ++ S G Sbjct: 21 ASGEDYRSMRRLIEKLDVP-RTQVYVEAAILEVTVTDKGQRGLDWHSPFGVSDSGIGGVD 79 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDR----------------------------------F 254 S + G S V L Sbjct: 80 SGSVGNLGFIQSATSSGGVSPTLGALAAPESLLTVAGGSLGGIVGEGVSIPIGDSTLTLP 139 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------------- 300 +F +L LE ++ L+ P + + AS G + ++ +S Sbjct: 140 AFGVILKWLETSSTANILSTPHILTTDNEEASIEVGQKIPFRRGTSIPAAAGALGGLGGG 199 Query: 301 -----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + +S D + L TP V ++ L I ++ + A P R Sbjct: 200 SLGGLGSLFSSTDRIDVSLKLTLTPHVNERNKVRLDIDQQIEDVAGIDEATGQPITAKRS 259 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A T V + TIVL GL++D + + + IP+L +P++G +FR + E+ + + T Sbjct: 260 AKTVVVVDDQQTIVLGGLIRDRVSEGESKIPVLGDLPLIGWMFRQHTKDVEKVNLLLVLT 319 Query: 416 PFLVK 420 P++V+ Sbjct: 320 PYVVR 324 >gi|307720788|ref|YP_003891928.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas autotrophica DSM 16294] gi|306978881|gb|ADN08916.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas autotrophica DSM 16294] Length = 542 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 54/290 (18%), Positives = 102/290 (35%), Gaps = 33/290 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------SITGSSSGPS 227 + + L + QV + V + V K G + ++ G + Sbjct: 226 ESYLKKLQDKVKLQVLIDVQLLSVTMSKGKSTGIDWKQLYALQNIKLSASTANYNNIGTT 285 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 G + + V+ L+ + +++ P + ++ Q A Sbjct: 286 IPADGIITDTAAVGAGASQLLSMSASGQLTEVIKFLKTQGDVNSISNPKVLTLNNQPALI 345 Query: 288 TSGGQHLYKTVSSSTGA------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 T+G ++ YK +SS+ +V + GV+L TP + I L+I Sbjct: 346 TAGTEYFYKIISSTNQQGTGGGVAATTQNDTVNSVFAGVLLTITPEISDDKTITLKINPS 405 Query: 336 VSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 +SE ++ P R+ + V + G I+L GL+ +P+L Sbjct: 406 LSETTTDISQTSNSGRDMPPDLNRRQLSSVVTVKDGNRIILGGLINSKNTSDTNQVPILG 465 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 IP+LG LF++ + E+ I P ++ +S D Y D Sbjct: 466 SIPVLGYLFKHEEIVKTVEELVIIIEPHIIH-KEKDSISLSDLGYEGLSD 514 >gi|77917753|ref|YP_355568.1| putative type II secretion system protein [Pelobacter carbinolicus DSM 2380] gi|77543836|gb|ABA87398.1| putative type II secretion system protein [Pelobacter carbinolicus DSM 2380] Length = 779 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 65/362 (17%), Positives = 131/362 (36%), Gaps = 39/362 (10%) Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 + +++ ++ + + + L H LR + +N+ V Sbjct: 243 AKPLNDKSVLIYPNSTDKT-----RQYDDYKIKTYYLSHISAKHAVNLLRTMLKINNLFV 297 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + +V + ++L+E L + + +V Sbjct: 298 HEERNALVFR-------ERPEVIQLAEQILDAND------------------RADSEVLF 332 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF-- 256 ++ + EV + G + S G +K G + V+ S Sbjct: 333 ELELIEVSHSDNWKFGPSLNPNSVSLGLAKGGNIVASGLSAGDATTNLVQSFSSLESVYT 392 Query: 257 --ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDY 312 V + LA P + + + A+ G + TV+++ + ++ D Sbjct: 393 LPTVVFDLQKTLVDSEILATPRIRVKNREKANVHVGNREPVITVTTTGETSTDNIQYVDV 452 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIV 369 GV L P + + + EVS N S KA TT+ L +G V Sbjct: 453 GVKLDIEPKIQLDDTVVTNLSLEVSGVTEKNTTANGSLALSISTTKAQTTLTLKNGERTV 512 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + GL++DD + ++ IPLL +P++G LF N ++++ EI ++ TP +++ V + D + Sbjct: 513 IGGLIRDDSTKTRKIIPLLGDLPLIGRLFTNHNKDKKKREILLSITPHILQNVDLPDRTL 572 Query: 430 PD 431 D Sbjct: 573 TD 574 >gi|171910644|ref|ZP_02926114.1| type II/III secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 816 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 67/367 (18%), Positives = 117/367 (31%), Gaps = 105/367 (28%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217 AV ++ T Q + + L Q+ + EV + ++GF Sbjct: 415 AVFVAATSQLIVRNTQPNLDQVEAFVEGLTKQVPQQIYITTKFVEVSQKNTDELGFDWLI 474 Query: 218 ---SITGSSSGPSKSFAADFGGKFVSEG-------------------------------- 242 I G + G + G S Sbjct: 475 GGFDIGGRAFGSGGTTGNSSNGPVSSSNYPFSQSGVPIGQNPVTAGLRSGTSAIAADSID 534 Query: 243 --------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G F++ GV F+ V+ AL + + ++ P++T SGQ A+ Sbjct: 535 GLISGQSLVSSAAPGVFALAGVFTDPQFQVVIRALSQKKGVDLMSAPSVTTRSGQRATVE 594 Query: 289 SGGQHLYKTVSSS-----------------------------TGATSVTTHDYGVVLHFT 319 + +Y T T T+ GV + Sbjct: 595 VIREFIYPTEFDPPQIPQSVGATTTTGGVGLGSSTAAFPVTPTTPTAFEMRPVGVRMEVD 654 Query: 320 PTVLSPG-RIGLRIQTEVSE------------------------PVIGVNAGDMPSYRVR 354 P + G I L + EV+E + N + P + R Sbjct: 655 PVIGPDGYTIDLNLAPEVTEFEGFINYGSPINTASTDALGNPTTVTLTENRIEQPVFSTR 714 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 K T V + G T+ + GL+++D+Q +++ +P+L IPILG LF++ + + + I Sbjct: 715 KVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDIPILGRLFQSKAEDHFKRNLMIFV 774 Query: 415 TPFLVKP 421 T L+ P Sbjct: 775 TAKLIDP 781 >gi|162457505|ref|YP_001619872.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce 56'] gi|161168087|emb|CAN99392.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce 56'] Length = 864 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 94/285 (32%), Gaps = 54/285 (18%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG---------------- 236 QV ++ I +V G + +G + + +GG Sbjct: 448 RRQVFIEAVIMDVNVSRSLDFGIGYHAGAPFNGLNPDDSVVYGGNNIRQSVIGLPAQLGA 507 Query: 237 ------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G + + + +F VLHAL + LA P + A +A + G Sbjct: 508 LALGIKGPAITGSNNILGTGISIPAFGVVLHALAQDGDSNVLATPHILATDNVAAEISIG 567 Query: 291 GQHLYKTVSSSTGATS-------------------------------VTTHDYGVVLHFT 319 +T G D G + Sbjct: 568 QNIPLQTNVGGGGLNQLASLAGGAGAAAGGLGGLAGLLGGLGGVGGTAARQDVGTKIKVV 627 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P V ++ L + E+S+ + R A TT+ + T+V+ GL++D + Sbjct: 628 PHVNDSDQVRLELSEEISDAGAPLEGALGAIPINKRTASTTLVVRDQQTVVIGGLMRDGM 687 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + IP+L IP+LG LFR + +T + + TP++++ Sbjct: 688 TTSETKIPVLGDIPVLGFLFRQRVKTKTKTNLLLVLTPYVIRDQD 732 >gi|311693304|gb|ADP96177.1| LOW QUALITY PROTEIN: pilus (MSHA type) biogenesis protein MshL [marine bacterium HP15] Length = 570 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 102/267 (38%), Gaps = 30/267 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA--------AD 233 ++ + + + QV L+ I E+ + Q G S S+S + S A Sbjct: 265 EEYLRRTELIMQRQVILEAKILEIALNEGYQQGINWSDIQSASSITASDGLPEDFTAQAL 324 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G + + F ++ L + ++ L+ P ++ ++ Q A G Sbjct: 325 AGQVIQTSDIGGLFSASVRAGDFTGLIELLGKQGNVQILSSPRISTVNNQKAVIKVGTDE 384 Query: 294 LYKT-------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + S++ + +T G+ L TP + G I L + VSE Sbjct: 385 FFCHRYDFDDNNSAVTATDSTSTSVELTPFFSGISLDVTPQISESGVITLHVHPSVSEVT 444 Query: 341 IGVNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + S VR+ D+ + SG +V+ GL+++ + +P S+I Sbjct: 445 DQEKVITIGERDVTLPLASSTVRETDSVIRAESGQIVVIGGLIQNSSEDNNSAVPFFSEI 504 Query: 392 PILGALFRNSRFNREETEIFIAATPFL 418 P++G LF+ RF ++E+ I P + Sbjct: 505 PLVGELFKQRRFQSRKSELVILLRPVV 531 >gi|51594667|ref|YP_068858.1| type III secretion protein EscC/SpiA, outer membrane pore [Yersinia pseudotuberculosis IP 32953] gi|51587949|emb|CAH19552.1| possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia pseudotuberculosis IP 32953] Length = 523 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%) Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194 + V L G+V +++ + + L+ + S+ N + I Sbjct: 221 QYRDQNVRLPGLVSVLRELNQGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQAN 280 Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 Q+ + VTI +V + Q+G S + S G SF + F Sbjct: 281 MPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNST----F 336 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + D +F L+AL++ + R L++P++ ++ A K Sbjct: 337 AKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKL- 395 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354 + + G +L TP ++ G + + + + + +P R Sbjct: 396 -QGEKVAKLESVTSGSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNS 454 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T L G +++L G ++D + + IPLL IP+LG LFR++ Sbjct: 455 DISTQATLQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 514 Query: 415 T 415 Sbjct: 515 K 515 >gi|22124429|ref|NP_667852.1| secretin [Yersinia pestis KIM 10] gi|45440265|ref|NP_991804.1| type III secretion protein [Yersinia pestis biovar Microtus str. 91001] gi|150260696|ref|ZP_01917424.1| possible type III secretion protein [Yersinia pestis CA88-4125] gi|165926705|ref|ZP_02222537.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. F1991016] gi|167402490|ref|ZP_02307945.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|218927462|ref|YP_002345337.1| putative type III secretion protein [Yersinia pestis CO92] gi|229836509|ref|ZP_04456675.1| possible type III secretion protein [Yersinia pestis Pestoides A] gi|229840118|ref|ZP_04460277.1| possible type III secretion protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842199|ref|ZP_04462354.1| possible type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904060|ref|ZP_04519173.1| possible type III secretion protein [Yersinia pestis Nepal516] gi|294502332|ref|YP_003566394.1| possible type III secretion protein [Yersinia pestis Z176003] gi|21957215|gb|AAM84103.1|AE013653_3 putative secretin [Yersinia pestis KIM 10] gi|45435121|gb|AAS60681.1| possible type III secretion protein [Yersinia pestis biovar Microtus str. 91001] gi|115346073|emb|CAL18941.1| possible type III secretion protein [Yersinia pestis CO92] gi|149290104|gb|EDM40181.1| possible type III secretion protein [Yersinia pestis CA88-4125] gi|165921328|gb|EDR38552.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. F1991016] gi|167048140|gb|EDR59548.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229679830|gb|EEO75933.1| possible type III secretion protein [Yersinia pestis Nepal516] gi|229690509|gb|EEO82563.1| possible type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696484|gb|EEO86531.1| possible type III secretion protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706193|gb|EEO92201.1| possible type III secretion protein [Yersinia pestis Pestoides A] gi|262360412|gb|ACY57133.1| possible type III secretion protein [Yersinia pestis D106004] gi|262364362|gb|ACY60919.1| possible type III secretion protein [Yersinia pestis D182038] gi|294352791|gb|ADE63132.1| possible type III secretion protein [Yersinia pestis Z176003] gi|320013878|gb|ADV97449.1| putative type III secretion protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 523 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%) Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194 + V L G+V +++ + + L+ + S+ N + I Sbjct: 221 QYRDQNVRLPGLVSVLRELNQGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQAN 280 Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 Q+ + VTI +V + Q+G S + S G SF + F Sbjct: 281 MPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNST----F 336 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + D +F L+AL++ + R L++P++ ++ A K Sbjct: 337 AKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKL- 395 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354 + + G +L TP ++ G + + + + + +P R Sbjct: 396 -QGEKVAKLESVTSGSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNS 454 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T L G +++L G ++D + + IPLL IP+LG LFR++ Sbjct: 455 DISTQATLQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 514 Query: 415 T 415 Sbjct: 515 K 515 >gi|320355296|ref|YP_004196635.1| type II and III secretion system protein [Desulfobulbus propionicus DSM 2032] gi|320123798|gb|ADW19344.1| type II and III secretion system protein [Desulfobulbus propionicus DSM 2032] Length = 586 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 106/315 (33%), Gaps = 35/315 (11%) Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVT 197 D V ++ +A + + + + +N L + QV Sbjct: 272 AKGDAVGSEEKTMSMGAKDKASFVIDRNVGLITVTAKPSLLKVVDDYINNLKKSLYKQVN 331 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--------VSEGGDFSVKG 249 ++ I EV +IG S S + G+ F + Sbjct: 332 IEAKIIEVYLQDNSKIGLDWSSVLKDFQISATTFFGNNGQVHPRTTADPDDFSNTFVSRV 391 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + +F+ L+ALE LA P LT ++GQ A + G Y + + Sbjct: 392 EIPSLTFDVFLNALEEQGDTHVLANPKLTVLNGQPAIISVGKDVAYIKSVTREKDSDTED 451 Query: 310 HDY---------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-------------- 346 Y G+ L ++L ++ L + ++ + G Sbjct: 452 ITYSAEVGNVVQGIALGVMASILDENKVILHLTPITTDLANATSDGEVPITTIGEGETAM 511 Query: 347 --DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P +VR+ T VE+ +G +++ GL+ + P L IP++ LF Sbjct: 512 SLGLPQVKVREMSTMVEVENGEMLIIGGLIDSIEGKTGAFAPGLGSIPVVKYLFGVEEKT 571 Query: 405 REETEIFIAATPFLV 419 ++ E+ I TP ++ Sbjct: 572 LQKRELVILLTPRII 586 >gi|332295419|ref|YP_004437342.1| type II and III secretion system protein [Thermodesulfobium narugense DSM 14796] gi|332178522|gb|AEE14211.1| type II and III secretion system protein [Thermodesulfobium narugense DSM 14796] Length = 630 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 13/254 (5%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + +++++ L+ + Q+ ++V + E+ +KQ+G Q + Sbjct: 382 APEDKQKIAEELLQNLDKPLK-QIEVQVMVIELDNQGIKQLGIQW------PNNIQFSGN 434 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G + S + L+A + L++P + A+ GQ + +G + Sbjct: 435 ATGTRTYGTSKSKSSVYTGTISNITASLYAQLNNNNAKILSDPRILALDGQDSYVFAGDK 494 Query: 293 HLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAG 346 VSS+TG T + GV+L TP + G I + + VS V + Sbjct: 495 LYIPQVSSATGGNVTYTTNEYDVGVLLKITPFIGENGEITIHVTPSVSAFNGDVTQLQIN 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + +R+AD T + G T + GL+ D+ ++ +P L +P+LG +FR + Sbjct: 555 QPFTTTIREADVTARVKDGQTFYIGGLISDEQRKQTISVPGLGNMPLLGPMFRYDYNMKS 614 Query: 407 ETEIFIAATPFLVK 420 TE+ TP +VK Sbjct: 615 RTEVIFLLTPHIVK 628 >gi|87311311|ref|ZP_01093433.1| general secretion pathway protein D (precursor) [Blastopirellula marina DSM 3645] gi|87286051|gb|EAQ77963.1| general secretion pathway protein D (precursor) [Blastopirellula marina DSM 3645] Length = 1199 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 125/323 (38%), Gaps = 53/323 (16%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207 Q ++ + + ETF + + K++ L+ V+++V IA+VR Sbjct: 742 TSSFQQVAREVIVVPETFSNSLIITATPRYFKQIVKIVEELDAR-PPMVSIQVLIADVRL 800 Query: 208 DILKQIGFQHSITGS------------------------------------SSGPSKSFA 231 ++++GF+ + S S+ S+ + Sbjct: 801 GKIEELGFEFGLQDSLLFDRSTVSSGQLDPGYNFNNAALGNSSSAASLATASAVGSQGLS 860 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G+ G S ++ AL++ + LA P + + Q A G Sbjct: 861 DLGLGRTNPALGYGGFVFSAASESVNVLIRALQQDNRMEVLARPHVMTMDNQPAFIQVGQ 920 Query: 292 QHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 + Y V++ S+T + GV+L+ P + G + + +Q E SE + + Sbjct: 921 RVPYITDTQVTNQGTVNSITLENTGVILNVIPRISPDGMVVMYVQAERSEVGNEADGIPI 980 Query: 349 -----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 P + A TTV SG TIVL GL++ + +PLL IP++G+L Sbjct: 981 SINQNGDVIRAPRINTQTATTTVSARSGQTIVLGGLIQKRTTVVSRRVPLLGDIPVVGSL 1040 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 FR F+ + +E+ I TP +V Sbjct: 1041 FRYDSFDGDRSELMIILTPTVVD 1063 >gi|331004879|ref|ZP_08328296.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989] gi|330421333|gb|EGG95582.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989] Length = 553 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 60/275 (21%), Positives = 114/275 (41%), Gaps = 23/275 (8%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 ++ ++ ++ + ++ + QV ++ I EV+ Q G + Sbjct: 254 VAIVTAMPKELAAVRRFLENTRLSVKRQVIIEAKILEVQLSKNHQTGVNWNAINGQLLLG 313 Query: 228 KS---FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 K+ F +SEG ++ T+L LE ++ L+ P ++ ++ Q Sbjct: 314 KNASDFDTGVTINEISEGVGEVFSSLIRISDTSTLLSLLETQGEMQVLSSPRVSTVNNQK 373 Query: 285 ASFTSGGQHLYKTVSS-----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 A G + T S S+ +++ G+ L TP + G + L I Sbjct: 374 AVIRVGTDQFFVTGISNSTISNASSTTSSPDIELSSFFSGISLDVTPQISDEGDVILHIH 433 Query: 334 TEVS-------EPVIGVNAGDMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +S V+G +A +P +R++D+ V+ SG IVL GL+++ I + Sbjct: 434 PVISTVTEEQKNIVVGDSAFSLPLALRDIRESDSIVKAKSGQVIVLGGLMQERINHVGGK 493 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P LS IP+ G LF ++ R ++E+ I P +V Sbjct: 494 RPGLSDIPVAGGLFNSNTDIRSKSELIILLKPTVV 528 >gi|262284505|gb|ACY41042.1| VscC [Vibrio alginolyticus] Length = 624 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 59/332 (17%), Positives = 116/332 (34%), Gaps = 43/332 (12%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 + + L+R ++ +V S V + ++ + + Sbjct: 210 TITVPGIASVLKRVVSGVQTQVTSAS-----SKEVTSSDKPVKSNKTASVH-------GG 257 Query: 177 ANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQHS 218 A ++ +N + + Q ++V +I ++ + L Q+G Sbjct: 258 ATVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWR 317 Query: 219 I---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272 G++ D V+ G + K +LD + + LE + + + Sbjct: 318 AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVV 377 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----R 327 + PTL A + K V T A + YG +L P ++ Sbjct: 378 SRPTLLTQENVEAVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPE 435 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I L + E + D+PS R + T + G ++++ G+ +D++ +PL Sbjct: 436 INLSLHLEDGAKIADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPL 495 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L IP LGALFR++ + T P +V Sbjct: 496 LGDIPYLGALFRSNTNTKRRTVRMFILEPRIV 527 >gi|89902101|ref|YP_524572.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89346838|gb|ABD71041.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 614 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 65/384 (16%), Positives = 119/384 (30%), Gaps = 64/384 (16%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +V G R++ S +A ++ + R K + IA E QV Sbjct: 238 ELTEAVKGLVGAGPGRSVVISPQAGIMAVHAMPDELRQV------DKFLKAAQIAVERQV 291 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------------- 240 L+ I EV Q G S + G + + G + Sbjct: 292 MLEAKIVEVELRDGYQSGIDWSALKNGGGSTGAMGVIGGNTSATTSSNTLVRGVQSNLPG 351 Query: 241 ---------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 G F+ VL LE ++ L+ P + ++ Q A Sbjct: 352 FSAGSALLADGISLPAAGAGLFGLAFATDGFQAVLGFLETQGDVQILSSPRIATLNNQKA 411 Query: 286 SFTSGGQHLYKTVSS---------------STGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 G + + T S + + ++T G+ L TP + +I L Sbjct: 412 VLKVGAEDFFVTNVSGGTTSSVTTGSTATLTMPSITLTPFFSGISLDVTPQIDEGTKIML 471 Query: 331 RIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + V+ G + S + + DT V + G + + GL++ + + Sbjct: 472 HVHPSVTTVSERAKQIDLGSAGNYVLPLASSSMNETDTLVRIQDGNIVAIGGLMQIESNR 531 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 G+P S +P+ LF N + E+ + P +++ +D D Sbjct: 532 KSSGLPGTSDVPLFSTLFGNHANTGRKKEVVVLIKPTIIR--TAQDWEAQTRRTRAALDD 589 Query: 441 KAFFFNRVNKIYGPKEASEVEGQN 464 RV +I G + Sbjct: 590 IDSVRARVIRIDGTVQEGAPRTPA 613 >gi|152993261|ref|YP_001358982.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1] gi|151425122|dbj|BAF72625.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1] Length = 536 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 111/310 (35%), Gaps = 55/310 (17%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 GMV +++ ++ + +N+L+ + QV + V I V+ Sbjct: 227 AGMVTVTGTARQINRVA------------------RYINVLSRQIKTQVLIDVRILAVKF 268 Query: 208 DILKQIGFQHSITGSSSGPSK------------------SFAADFGGKFVSEGGDFSVKG 249 D + G S + + D ++ + S+ Sbjct: 269 DDSRTTGVDWSQLYGLQNFAVDSLIMAQKNVASYTFDKLNGIQDTAFGPDTQPRNGSLVQ 328 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----------TVS 299 + + + V+ L ++ ++ P + ++ Q A + G + YK + Sbjct: 329 LTGKANINEVVKFLATQGDVKAISSPRVMTLNNQPAMISVGKELFYKLKSTSALGTGNNA 388 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPS 350 ++ SV + G++L TP + + G I L+I +SE + + P Sbjct: 389 NTAQGESVDSVFAGILLDITPEIGNNGIITLKINPSISETIEDIQTQKNTVTGSRDMPPD 448 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+ + V++ G +L GL+ IPLL IP+L F++ E+ Sbjct: 449 LIRRQIASVVKVKDGEHAILGGLITSSTGTKVNKIPLLGDIPLLEYAFKHEEKINRVEEL 508 Query: 411 FIAATPFLVK 420 + TP +VK Sbjct: 509 VLIITPHIVK 518 >gi|332750364|gb|EGJ80775.1| transport protein hofQ domain protein [Shigella flexneri 4343-70] Length = 170 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 2/166 (1%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + L ALE+ + +A P L A Q AS + Y+ S +GATSV + + Sbjct: 2 LDLELSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQVSSGESGATSVEFKEAVLG 61 Query: 316 LHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + TPTVL GRI L+ I V V+ G++ + ++ +T VE+ SG T+ L G+ Sbjct: 62 MEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGI 121 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 122 FTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 167 >gi|167041767|gb|ABZ06510.1| putative bacterial type II and III secretion system protein [uncultured marine microorganism HF4000_010L19] Length = 536 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 63/389 (16%), Positives = 133/389 (34%), Gaps = 42/389 (10%) Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 IL + D+ V++ VHSP + + ++L I + Sbjct: 164 QTILDMRTLGADIDVANGII---RVHSPEKL---------TSQEEFKSARAEVLKKKIQL 211 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 E+ + + + R S + + + + + E + Sbjct: 212 EQSVEPILAEIFRLYYVSPTQAKQTLEDLFVTQGAEGASTLSNIKITVEDTTRSIIVRGH 271 Query: 177 ANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSF 230 V+ ++I + QV ++ I E D K++G + + + S Sbjct: 272 KPDLDVIDAVLREIDIKTK-QVLIEAFIVEATSDFQKRLGSRIAAMQKQVRGDDVVTISG 330 Query: 231 AADFGGKFVS--------------------EGGDFSVKGVLDRFSFETVLHALERATAIR 270 G S + L + + + AL+ Sbjct: 331 ITGGGNAATSAADVALGAAAGTLAANAITGGTSGIGILKQLGARALKLEIEALQSLGISN 390 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ P++ ++ Q A T G + ++ G T+ + + L TP+V+ G I L Sbjct: 391 IISSPSVFTLNNQEAKITQGTE--IAYQVTADGTTTTEFKEAALSLVVTPSVIGDGNILL 448 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 IQ ++ V D P+ + + T + + G +V+ G+ + K P +SK Sbjct: 449 DIQVN-NDSPTTVAGSDEPAIKTNEIKTKLLVSDGDIVVIGGIKINTATDTKTATPGMSK 507 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 +P++G LF+ + + E+ I P ++ Sbjct: 508 LPVVGNLFKGKAVSDKMDELLIFIAPRVI 536 >gi|154147986|ref|YP_001406614.1| type II and III secretion system protein [Campylobacter hominis ATCC BAA-381] gi|153803995|gb|ABS51002.1| type II and III secretion system protein [Campylobacter hominis ATCC BAA-381] Length = 541 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 58/350 (16%), Positives = 120/350 (34%), Gaps = 70/350 (20%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 +++ +G + + + + + L + + +N + E QV+L V+I Sbjct: 176 SILNNGTEKYVAIAPIINQNAG--LVTVTGMKSQIARVDAYINKMKKRLERQVSLDVSIV 233 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------------------- 238 V G S + + Sbjct: 234 AVELSNSYTTGIDWSKFQLGFNTYLNGDPSTPTSYSFGNRNKVGQVTSLPQIEDIKDKDG 293 Query: 239 ------------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S+ G F+ + +++ LE + ++ Sbjct: 294 KILFSRPTSLGTWDYKEKSMGSVKASDSNGVWAIGANLNFNIDGMINFLETKGKTKIISS 353 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDY----GVVLHFTPTVL 323 P +T ++ Q A + G Y+ ++T G TSVT +Y G++L+ P + Sbjct: 354 PKVTTMNNQPAIISVGDVINYRIQENTTSGGQTDAGTTSVTYTNYSTFIGILLNILPEIS 413 Query: 324 SPGRIGLRIQTEVSEP--------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 RI LR+ +S+ ++ P +K + V + G T++L GL+ Sbjct: 414 DDNRIMLRVNPSLSDFKYQADREATAQLDRVMAPDTIQKKISSVVWVDDGDTVILGGLIG 473 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + + + +P LS IP++G LF+++ TE+ TP ++ + Sbjct: 474 QNKGKDNKNVPFLSDIPLIGNLFKSTADRLTTTELVFVITPRIIDNTDTK 523 >gi|312879791|ref|ZP_07739591.1| general secretion pathway protein D [Aminomonas paucivorans DSM 12260] gi|310783082|gb|EFQ23480.1| general secretion pathway protein D [Aminomonas paucivorans DSM 12260] Length = 648 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 118/313 (37%), Gaps = 36/313 (11%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 ++ ++V+ L+I QV L+ +AEV L Q G + G FA Sbjct: 333 SAPPEQYAAIERVLEQLDIQ-PKQVLLRGLVAEVNLTKLDQAGVDWAAWGGGLTGDGVFA 391 Query: 232 ADFGGKFVS----------------------EGGDFSVKGVLDRFSFETVLHALERATAI 269 S G + + + L R AI Sbjct: 392 GQVQMGNSSIPPMFLEWFRDLTKHDTVTYDRFGNAITTTVYDSKALVYGYVKLLNRFDAI 451 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGVVLHFTPTVL 323 L+ P + +S G S D G++L TP + Sbjct: 452 NVLSMPRIMCTDNLESSLQVGQVIPQLKGKLSEVNNPSAVQSSYEYKDTGLILKVTPHIR 511 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 S + L I+ + E V+ + D P+ R+ T V + +G TI+L G++K+ + +K Sbjct: 512 SGNLVALEIEQRIEE-VLTASTVDTPTTTKREIKTNVLVENGQTIILGGIIKEAEKSMKS 570 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV----KPVAMRDLSRPDDHYSVEDD 439 +P LS IP+LG LF ++ RE+ ++ I TP+++ + V + D + Sbjct: 571 RVPGLSYIPLLGNLFTSTVKQREKVDLMIFLTPYILENPRQAVDVSVQISSGDQVPSAAE 630 Query: 440 AKAFFFNRVNKIY 452 A+ R++K++ Sbjct: 631 AETTL--RLDKLF 641 >gi|187250988|ref|YP_001875470.1| type II secretion system [rpteom [Elusimicrobium minutum Pei191] gi|186971148|gb|ACC98133.1| Putatively involved in type II secretion system [Elusimicrobium minutum Pei191] Length = 527 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 99/281 (35%), Gaps = 44/281 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + ++ L+I QV ++ I EV + +IG + T + A +V Sbjct: 246 ENILAELDIK-PPQVLIEAQIIEVNKSSGLEIGLSYGGTDGTIFKFTGPARGVDIDYVKG 304 Query: 242 GGDFSVKGVL-----------------------------------DRFSFETVLHALERA 266 G + D SF VL +L Sbjct: 305 NGVSGWGYIFPPAGTGTGGSSGGDSGGGSTDGSGGNSNSPKDAFLDFSSFSIVLKSLLTR 364 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQH---LYKTVSSSTGATSV-----TTHDYGVVLHF 318 + L +P + I+ Q A S +S +TG+T+V G+ L Sbjct: 365 GEAKYLGKPKVVTINNQPAVIESTRDAAVGFASNLSGNTGSTNVVSQTAERKTVGLTLKV 424 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TP V G I L I+ S + R A T V + +G T+VL GLL Sbjct: 425 TPQVNKEGYITLLIEPSYSSVANSAVSDGTKDTLNRSASTLVRVKNGQTVVLGGLLSSRE 484 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP++G LF +E T++ I TP ++ Sbjct: 485 ILEDRKVPLLGDIPLIGWLFTQRSTTKETTDMVIFVTPTIL 525 >gi|102227325|gb|ABF70182.1| AscC [Aeromonas hydrophila] Length = 614 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 50/314 (15%), Positives = 100/314 (31%), Gaps = 19/314 (6%) Query: 116 IERDIAHLEMTLRRFIADSNIRV---EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 + + + L R ++D+ +++ E + G D L + Sbjct: 212 TDVEAPGVATILSRLLSDAGVQMVNGEGTKGSTSHSGQAIVQADPSLNAVLVRDAPERMA 271 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 ++ K + +A I ++ + L Q+G + + + Sbjct: 272 MYGKLIAALDKPSARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVIIK 323 Query: 233 DFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G S+ ++ LE + ++ PTL A Sbjct: 324 TTGDRKGIEGGAALGSLVDSKGLDYLLARVNLLENQGNAQVVSRPTLLTQENTQAVIDHS 383 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-G 346 + K S + YG +L TP V+ G + L + E + Sbjct: 384 ETYYVKI--SGERVAELKGITYGTMLRMTPRVIQLGDRPEVSLSLHIEDGNQKPNSSGLD 441 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P+ DT + G ++++ G+ +D++ + +P L IP LGALFR+ Sbjct: 442 GIPTISRTVVDTIARVGHGQSLLIGGIYRDELSESLSKVPFLGDIPYLGALFRSKESQTR 501 Query: 407 ETEIFIAATPFLVK 420 P L+ Sbjct: 502 RQVRLFIIEPRLID 515 >gi|115351491|ref|YP_773330.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] gi|115281479|gb|ABI86996.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] Length = 812 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 68/349 (19%), Positives = 133/349 (38%), Gaps = 35/349 (10%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V T+ ++ +A + + + L D + LR+ I ++ V+ Sbjct: 240 KVLDRHTLLVYPSQPEKA-----RNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVD 294 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + VV+ TIQ + ++V+ L+I + VTL Sbjct: 295 ERVNAVVMRDTPETIQVA------------------------ERVVMGLDIPQSE-VTLD 329 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 V + EV + +G Q+ + + V + Sbjct: 330 VQVLEVNMNDSLDLGVQYPGKIQFNALGGVEGGALTLGDLLRLNRDRVGVSSESGGLALA 389 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLH 317 + L++ +TLA P + + + A+ G + T +++ G SV+ D G++L Sbjct: 390 IDLLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVTTTNANGVVTESVSYQDVGLMLK 449 Query: 318 FTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P + + +++ EVS S R A+T + +G T +LAGL+ Sbjct: 450 VEPRISLNEEVSVKVNMEVSSILTKETTKTGLVAYSLGTRNAETLMTAKNGETQILAGLV 509 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 K + G+P +S +P+LG LF ++ + E +EI + TP + + + Sbjct: 510 KRNESDSVAGLPGVSGLPVLGRLFGSNGRSNERSEIVLLITPHIERNLD 558 >gi|163883892|gb|ABY48121.1| RcpA [Yersinia ruckeri] Length = 304 Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 62/295 (21%), Positives = 124/295 (42%), Gaps = 25/295 (8%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + + + + I+ V ++ + S AD + ++ ++ K G A L Sbjct: 31 HAEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKK 90 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 K + + + +++ I+ + +R DS I + + + +L G +T + + ++ Sbjct: 91 NKPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVA 150 Query: 166 TFLSQ----SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + + Y S + N + I +QV +K+TIAEV +D IG S G Sbjct: 151 NAIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIG 210 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + SG + G T++ A+ + R LAEP L+ +S Sbjct: 211 NVSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLS 251 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 G++ASF GG+ + + +T +V+ ++G+ L+ V RI +++ EV Sbjct: 252 GETASFLVGGELPIVSTTQNT--INVSYKEFGIKLNIGAKVSESKRIRVKLDEEV 304 >gi|262363857|gb|ACY60577.1| outer membrane secretin precursor [Yersinia pestis D106004] Length = 470 Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 E + L+R ++D+ I+ V + + Q + RA ++ S Sbjct: 68 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 120 Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S +++ L++ + ++V +I ++ D L ++G + + + Sbjct: 121 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 180 Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G S G S+ ++ LE + + ++ PTL A Sbjct: 181 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 240 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345 + K + YG +L TP VL+ G I L + E ++ Sbjct: 241 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 298 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ DT + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 299 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 358 Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429 T P ++ L+ Sbjct: 359 RRTVRLFIIEPRIIDEGIAHHLAL 382 >gi|253996576|ref|YP_003048640.1| type II and III secretion system protein [Methylotenera mobilis JLW8] gi|253983255|gb|ACT48113.1| type II and III secretion system protein [Methylotenera mobilis JLW8] Length = 583 Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 112/322 (34%), Gaps = 49/322 (15%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L+G+V + V L + + + +NL+ ++ E QV L+ I V+ Sbjct: 234 LNGIVGNENGRRVIVNLQSGVIVVRAMPNEIRNV-ESFLNLMQVSIERQVILEAKILNVQ 292 Query: 207 RDILKQIGFQHSITGSSSGPSK--------------------------SFAADFGGKFVS 240 + Q G S+ G S + S + Sbjct: 293 LNDQSQSGVNWSVFGRSGSNTGIVGNINANTRLSSSGNGNLVSGDLTASTGTVLSNAATT 352 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G L +F T+L LE ++ L+ P +++I+ Q A G + T S Sbjct: 353 ALGGPLFAIALQGANFSTLLSFLETQGDVQVLSSPRISSINNQKAVLKVGTDEFFVTGIS 412 Query: 301 STGATSV-----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341 S SV G+ L TP + I L + +S+ Sbjct: 413 SNTTASVGATTTVPEVILQPFFSGITLDVTPQIDKDDNIILHMHPSISQVSTVNKQVTLG 472 Query: 342 -GVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++P S + + D+ V G IV+ GL+ + K +P L + +GA F Sbjct: 473 GTAGQINLPLASSNISETDSIVRTRDGRVIVIGGLMTESASSTKSKVPGLGDVKGVGAAF 532 Query: 399 RNSRFNREETEIFIAATPFLVK 420 R ++ +TE+ I +V+ Sbjct: 533 RQQSASKTKTELVILLKASVVQ 554 >gi|74316782|ref|YP_314522.1| general secretion pathway protein D [Thiobacillus denitrificans ATCC 25259] gi|74056277|gb|AAZ96717.1| general secretion pathway protein D [Thiobacillus denitrificans ATCC 25259] Length = 554 Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 102/289 (35%), Gaps = 40/289 (13%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------- 217 ++ + +A E QV L+ I EVR Q G Sbjct: 240 KTPPRTMREVERFLKATALAVERQVMLEAKIIEVRLSDGFQTGINWAALHEGRHKYSSGA 299 Query: 218 -----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 ++ ++ S G S SF +++ LE A+ L Sbjct: 300 DAGNFNLVTGAASGSLGSVLGSGLPAASGTSGGIFGLAFQTKSFAALINFLETQGAVHVL 359 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSST-----------GATSVTTHDYGVVLHFTPT 321 + P + A++ Q A G + T S+T + ++ G+ L TP Sbjct: 360 SSPRIAALNNQKAVLKVGTDDFFVTNVSTTSNTGGAGTTTTPSVTLQPFFSGIALDVTPQ 419 Query: 322 VLSPGRIGLRIQTEVSEPV--------IGVNAGDMPSYR--VRKADTTVELPSGGTIVLA 371 + GRI L ++ VS + +P V + D+ V++ G + + Sbjct: 420 IDERGRITLHVRPSVSVVTEKIKNIDAGAAGSLTLPLASSAVSETDSVVQVEDGRIVAIG 479 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G++K +P + ++P+LG F N+ + ++E+ I P ++ Sbjct: 480 GMMKQSFDDSANRVPAIGRVPLLGYFFGNTARSASKSELVILIKPTVID 528 >gi|309389153|gb|ADO77033.1| type II and III secretion system protein [Halanaerobium praevalens DSM 2228] Length = 438 Score = 152 bits (385), Expect = 9e-35, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 19/239 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ +K + E+ R +K++G S + G + Sbjct: 175 KQIMIKARVEEISRTEIKELGINPSQLTELK-----IIKNEAGDLEEL-----------K 218 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHD 311 ++ L +L LA P+L + + A G Q K + T ++ + Sbjct: 219 PNWPDTLRSLNERGLSNILANPSLMTLDRKKAKLIIGDQIPVKLERVESEKTVSTINYIE 278 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G+VL F P +++ + L I+ V+ V A +P+ R A+TTV L + T+ + Sbjct: 279 AGIVLEFLPKIINEKEVLLEIKPSVNSL-GQVLADGLPAVNSRSAETTVILENDQTLAIG 337 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 GL+K D + + +P+L+ +P+LG LF N ETE+ I TP +++ P Sbjct: 338 GLIKKDELKSIKEVPILADLPLLGKLFSAEEKNDIETELIIFITPKIIESKTEIKTKTP 396 >gi|303248632|ref|ZP_07334887.1| type II and III secretion system protein [Desulfovibrio fructosovorans JJ] gi|302489982|gb|EFL49906.1| type II and III secretion system protein [Desulfovibrio fructosovorans JJ] Length = 629 Score = 152 bits (385), Expect = 9e-35, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 2/223 (0%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G + G + + G + G + G + E L AL ++ LA Sbjct: 395 GSSGNGFGLNYPALTNSLTTASGLGAAGAGVNFLFGKIGENVLEAQLTALAEDNKVKILA 454 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 PT+T + Q+A +G Y + S + T+V + + L P V+ + ++I Sbjct: 455 SPTITTMENQTAFVENGMDVPYTSTSQNG--TNVQFANATLRLEILPHVVDGTNLRMKIT 512 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + + P R+ + + + TIV++GL++D + G+P L IP Sbjct: 513 VKDDQVDTSRTVDGNPYIYKRETQSNLVVEDRETIVISGLVRDTVSDGNSGVPFLRDIPG 572 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 LG F++ + E ++ I TP ++K + + D Sbjct: 573 LGWAFKSKNSSVEREQMLIFITPIILKEKPIAPVPPVADRVDP 615 >gi|171059300|ref|YP_001791649.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] gi|170776745|gb|ACB34884.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] Length = 662 Score = 152 bits (385), Expect = 9e-35, Method: Composition-based stats. Identities = 67/434 (15%), Positives = 152/434 (35%), Gaps = 63/434 (14%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 + + K P + A + + + + I+I L++ + + + V + + Sbjct: 180 AGLEAAFKRPVTLQFRDANVKMVFEALSRTANINIILDRDVRADLR---TTIYVQNASVE 236 Query: 78 DVV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 D + V + T++++ + + + L + A + Sbjct: 237 DTLDLILLQNQLDRRVLNGNTIFVYPATPAK-----QREYNELKVRTFQLSNIEAAQMAT 291 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 ++ + ++ + S+++V+ +I +++ ++ + Sbjct: 292 IIKTMLKTRDVVTDAKSNSLVMRDTAASIAVAEKL--IAANDVPDPEVVLEVQVLEV--- 346 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 D L IG + + PS + S+ Sbjct: 347 --------------------SSDRLSNIGLRFPDAFTVGTPSTATTVGDLRALTSDNLTA 386 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--------HLYKT 297 S + + T LA P + A + + A G + ++ Sbjct: 387 SSLSLGLNLL--------LQDTDTNILASPRIRARNKEKARILVGDKVPVITNLITPQQS 438 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRK 355 SS S+ D G+ L P V + G +G+++ EVS I ++G R Sbjct: 439 GQSSVITGSIQYVDVGIKLEVEPQVYADGDVGIKVNLEVSNIAKTITTSSGVAYQIGTRN 498 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A T + L G T ++AGL+ D + +P L ++P++G LF ++ + ++EI ++ T Sbjct: 499 ATTALRLHDGETQMMAGLINDQDRSTASKLPGLGQLPVIGRLFTSTNASGGKSEIVLSIT 558 Query: 416 PFLVKPVAMRDLSR 429 P +V+P + + Sbjct: 559 PRIVRPQSTPEARL 572 >gi|90416464|ref|ZP_01224395.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2207] gi|90331663|gb|EAS46891.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2207] Length = 754 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 66/330 (20%), Positives = 120/330 (36%), Gaps = 60/330 (18%) Query: 148 HGMVRTIQDSQRAVELSETFLSQ--SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 G T S+R + + + + ++ K++++ +++ + QV ++ I Sbjct: 422 EGNATTTILSERGSAIVDERTNTIILTDTEDKINAFKRLIDEIDVPIK-QVLIEARIVIA 480 Query: 206 RRDILKQI-------GFQHSITGSSSGPSKSFAADFGG---------------------- 236 D K++ G + G+ P F G Sbjct: 481 NTDFKKELGVTWGLAGIEKLTGGTIGSPFGDKTLGFSGRRSGLTPGAGVKETFTYSADEI 540 Query: 237 --------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 + G FS+ + D F + L ALE Sbjct: 541 ETDDDGITTYTRNYDIGLGDSLAVDLGVDNPTGSFSLGYLTDNFLIDLELSALESDGFGE 600 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 +++P + Q A SG + Y+ +SS GATS+ + + L TP + RI + Sbjct: 601 IVSQPKVLTGDKQQAVIKSGTEIAYQKATSS-GATSIEFKEAVLQLEVTPQITPDNRIIM 659 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + + V PS + + +T + +G T+VL G+ + + + +PLL Sbjct: 660 DLLVS-QDSVGAFTPTGEPSIDITQIETQALVGNGQTLVLEGIFQTEEVNGTDKVPLLGD 718 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420 +P LG LFRN N E+ EI TP ++ Sbjct: 719 LPFLGKLFRNDLRNIEKREILSFITPKIID 748 >gi|153947838|ref|YP_001402784.1| YscC/HrcC family type III secretion outer membrane protein [Yersinia pseudotuberculosis IP 31758] gi|170026130|ref|YP_001722635.1| YscC/HrcC family type III secretion outer membrane protein [Yersinia pseudotuberculosis YPIII] gi|186893670|ref|YP_001870782.1| YscC/HrcC family type III secretion outer membrane protein [Yersinia pseudotuberculosis PB1/+] gi|152959333|gb|ABS46794.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pseudotuberculosis IP 31758] gi|169752664|gb|ACA70182.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pseudotuberculosis YPIII] gi|186696696|gb|ACC87325.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pseudotuberculosis PB1/+] Length = 505 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%) Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194 + V L G+V +++ + + L+ + S+ N + I Sbjct: 203 QYRDQNVRLPGLVSVLRELNQGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQAN 262 Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 Q+ + VTI +V + Q+G S + S G SF + F Sbjct: 263 MPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNST----F 318 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + D +F L+AL++ + R L++P++ ++ A K Sbjct: 319 AKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKL- 377 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354 + + G +L TP ++ G + + + + + +P R Sbjct: 378 -QGEKVAKLESVTSGSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNS 436 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T L G +++L G ++D + + IPLL IP+LG LFR++ Sbjct: 437 DISTQATLQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 496 Query: 415 T 415 Sbjct: 497 K 497 >gi|253987556|ref|YP_003038912.1| hypothetical protein PAU_00073 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779006|emb|CAQ82166.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 344 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 89/232 (38%), Gaps = 7/232 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---DFSVKGV 250 QV + I R+ L ++G I + + + Sbjct: 114 QQVQITAHIVTSSREALHELGIYWGIPIGEQLNTSTGINRLNINQAANDNMHRFALNIAR 173 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + E L ALE+ + +A P LTA Q AS G VS ++V Sbjct: 174 IHTSLLELELSALEQENLLDIIASPRLTASHQQLASIKQGSDIP--YVSQEKEKSTVQFK 231 Query: 311 DYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP +L +I L+I + I G+ + ++ T V + +G T+ Sbjct: 232 EAVLGMEVTPHILRKDKIRLSLKISQNMPGISISQGGGENLTIDKQEIMTQVTVKNGETL 291 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +L G+ + + + IP LS IP+LG+LF E+ I TP L+ Sbjct: 292 ILGGIFQQKKGEKTQKIPYLSDIPLLGSLFDQKGHKHSRRELIIFITPQLMD 343 >gi|120602835|ref|YP_967235.1| type II and III secretion system protein [Desulfovibrio vulgaris DP4] gi|120563064|gb|ABM28808.1| type II and III secretion system protein [Desulfovibrio vulgaris DP4] Length = 524 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 68/365 (18%), Positives = 130/365 (35%), Gaps = 45/365 (12%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV---LHGMVRTIQ 155 V+ + ++ + +R L+ + S I V + L G + + Sbjct: 152 VMTLADKKAEVERELLETQRMAQQLKGRKVGPLVTSVIEVRYAEAAELKKNLEGFLSKDE 211 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQI 213 ++ + + S Q K++ L+N Q+ LK I E RD + + Sbjct: 212 QNKPVGAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVEATRDTARDL 271 Query: 214 GFQHSITGSSSG-----------------------PSKSFAADFGGKFVSEGGDFSV--- 247 G Q G S G +G + Sbjct: 272 GIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVPVIPPGGLSGQGFGMNFPVN 331 Query: 248 -------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G + E L AL+ + L+ P+++ + Q A FT G+ + Sbjct: 332 KAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMA-FTENGEKV 390 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 +++ G V D + L TP V+ + L++Q + E + P + Sbjct: 391 PYVSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTVEGNPFIIKK 450 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +TT+ + G T+V++GL K+ ++G+P L + +GALF N + ++ I Sbjct: 451 QTETTLIVQDGETVVISGLTKERSSSRRQGLPYLQDVEGIGALFGNDSKANKLEDVLIFI 510 Query: 415 TPFLV 419 TP ++ Sbjct: 511 TPAIL 515 >gi|83645990|ref|YP_434425.1| putative type III secretion protein YscC [Hahella chejuensis KCTC 2396] gi|83634033|gb|ABC30000.1| putative type III secretion protein YscC [Hahella chejuensis KCTC 2396] Length = 573 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 90/238 (37%), Gaps = 14/238 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------FVSEGGD 244 QV ++V+I +V D L ++GF+ I G + + + + V +G + Sbjct: 309 RSQVEIEVSIIDVSTDRLNEMGFEWRINGRNGSFTNADFSQGALPRSPNELSFVVGDGAN 368 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 FS + F + + AL L++PT+ + A + V Sbjct: 369 FSTLLTNTQDLFLSRIRALSEDGDASVLSQPTILTLDNIEAVLDHSTTFFVRLV--GDRE 426 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + G V+ TP ++ +I L I E G D+P+ T Sbjct: 427 VDLFPVSVGSVVRVTPHIVKGDLSDKIHLNINIE-DGQQTGQAVDDIPAVSKSIITTEAL 485 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G++++ G + + IP+L IP+LG LFR ++ +P +V Sbjct: 486 VNDNGSLLVGGYYFNQDSTNRSKIPVLGDIPLLGRLFRTDGSQLQKRARLFLISPRIV 543 >gi|108810017|ref|YP_653933.1| type III secretion protein [Yersinia pestis Antiqua] gi|108813572|ref|YP_649339.1| type III secretion protein [Yersinia pestis Nepal516] gi|145600961|ref|YP_001165037.1| type III secretion protein [Yersinia pestis Pestoides F] gi|165936434|ref|ZP_02225002.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. IP275] gi|166010446|ref|ZP_02231344.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213955|ref|ZP_02239990.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. B42003004] gi|167419179|ref|ZP_02310932.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426134|ref|ZP_02317887.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469427|ref|ZP_02334131.1| possible type III secretion protein [Yersinia pestis FV-1] gi|270488950|ref|ZP_06206024.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis KIM D27] gi|108777220|gb|ABG19739.1| type III secretion protein [Yersinia pestis Nepal516] gi|108781930|gb|ABG15988.1| type III secretion protein [Yersinia pestis Antiqua] gi|145212657|gb|ABP42064.1| type III secretion protein [Yersinia pestis Pestoides F] gi|165915550|gb|EDR34159.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. IP275] gi|165990536|gb|EDR42837.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204930|gb|EDR49410.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. B42003004] gi|166963173|gb|EDR59194.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167054845|gb|EDR64647.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270337454|gb|EFA48231.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis KIM D27] Length = 505 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%) Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194 + V L G+V +++ + + L+ + S+ N + I Sbjct: 203 QYRDQNVRLPGLVSVLRELNQGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQAN 262 Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 Q+ + VTI +V + Q+G S + S G SF + F Sbjct: 263 MPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNST----F 318 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + D +F L+AL++ + R L++P++ ++ A K Sbjct: 319 AKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKL- 377 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354 + + G +L TP ++ G + + + + + +P R Sbjct: 378 -QGEKVAKLESVTSGSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNS 436 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T L G +++L G ++D + + IPLL IP+LG LFR++ Sbjct: 437 DISTQATLQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 496 Query: 415 T 415 Sbjct: 497 K 497 >gi|46579684|ref|YP_010492.1| type II/III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449099|gb|AAS95751.1| bacterial type II/III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233480|gb|ADP86334.1| type II and III secretion system protein [Desulfovibrio vulgaris RCH1] Length = 524 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 68/365 (18%), Positives = 130/365 (35%), Gaps = 45/365 (12%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV---LHGMVRTIQ 155 V+ + ++ + +R L+ + S I V + L G + + Sbjct: 152 VMTLADKKAEVERELLETQRMAQQLKGRKVGPLVTSVIEVRYAEAAELKKNLEGFLSKDE 211 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQI 213 ++ + + S Q K++ L+N Q+ LK I E RD + + Sbjct: 212 QNKPVGAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVEATRDTARDL 271 Query: 214 GFQHSITGSSSG-----------------------PSKSFAADFGGKFVSEGGDFSV--- 247 G Q G S G +G + Sbjct: 272 GIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVPVIPPGGLSGQGFGMNFPVN 331 Query: 248 -------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G + E L AL+ + L+ P+++ + Q A FT G+ + Sbjct: 332 KAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMA-FTENGEKV 390 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 +++ G V D + L TP V+ + L++Q + E + P + Sbjct: 391 PYVSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTVEGNPFIIKK 450 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +TT+ + G T+V++GL K+ ++G+P L + +GALF N + ++ I Sbjct: 451 QTETTLIVQDGETVVISGLTKERSSTRRQGLPYLQDVEGIGALFGNDSKANKLEDVLIFI 510 Query: 415 TPFLV 419 TP ++ Sbjct: 511 TPAIL 515 >gi|254445969|ref|ZP_05059445.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] gi|198260277|gb|EDY84585.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] Length = 736 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 78/449 (17%), Positives = 154/449 (34%), Gaps = 33/449 (7%) Query: 51 SIGLNKVIILQVP---VDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDG 106 ++ + II ++ + V AD V S + ++ GK N Sbjct: 291 NLEFFEGIIQKLDIKADPSTRIEVIPLKHADATEVASLLSQFVSGKTKNDTN----DRTN 346 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 A D+ +R + + G R Q S L++ Sbjct: 347 SPGNTNTRSGRSGGAGSPTFGGANQNDTPVRETLGAGAGSSVGEDRDSQFSTFMTILADE 406 Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---HSITG 221 + + + ++N ++I QV ++V IAEV + + + S+T Sbjct: 407 RSNSLVISGTRSDLDLMTVLVNKIDILLP-QVRIEVIIAEVSLNENEGLSRGMDAFSMTY 465 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------FETVLHALERATAIRT 271 + + G + +F G+ F+ +L+ + ++ Sbjct: 466 AEQDDGSANITIPGPGDDAPAINFLGLGLDGSFNYNDGVISGLTLNGILNTARSNSNVQL 525 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPG 326 L+ PTL + A+ T S + T +V D G+ L TP + Sbjct: 526 LSVPTLVTTHNKEATIVVAEARPIVTSSQTSSISDTFRQNVQYEDIGIELTVTPLIGPND 585 Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 I L I ++ + + ++ D P R+A + V + + +VL GL ++ + + + Sbjct: 586 VIQLEIDQKIDDISGKVTIDGNDQPIIGRRQATSYVSVANHELVVLGGLQRNRVTKGRSK 645 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDDAKA 442 + L +IP+LG LF +TE+ + P +++ +D S+ D + Sbjct: 646 MSFLGEIPLLGGLFNRRSDESVKTELLVFIRPEVIRTTDDVNQDASKKIDELEAAAAIQR 705 Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIGF 471 F I + E + GF Sbjct: 706 FLETGELDISKIGDLDEEAPKAQPKGKGF 734 >gi|207724227|ref|YP_002254624.1| general secretion pathway gspd-related protein [Ralstonia solanacearum MolK2] gi|206589440|emb|CAQ36401.1| general secretion pathway gspd-related protein [Ralstonia solanacearum MolK2] Length = 761 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 66/460 (14%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV--- 79 AK P + A + + + + I+ L+K + + V + D Sbjct: 180 AAKQPINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDL 236 Query: 80 ---------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 + + T+ ++ + ++ L + L+ Sbjct: 237 ILSTTQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNAEAKQTGAMLKTM 291 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + ++ ++ VV+ +S V L+E + RN +V+ + + Sbjct: 292 LKIREPYIDERANMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS- 343 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 L Q+G Q+ + + + S + A Sbjct: 344 -----------------TKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNS----DR 382 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSV 307 + + VL+ LA P + A + + A G + T +S++ + SV Sbjct: 383 IGVSTPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESV 442 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPS 364 D G+ L P++ + ++I EVS + + R A+T ++L Sbjct: 443 QYIDVGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHD 502 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP Sbjct: 503 GETQLLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP--- 559 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 + E + F+ + + + Sbjct: 560 --------SHRPETNFMEFWSGTETNARARRTLPDSQAPA 591 >gi|254459101|ref|ZP_05072524.1| type II and III secretion system protein [Campylobacterales bacterium GD 1] gi|207084372|gb|EDZ61661.1| type II and III secretion system protein [Campylobacterales bacterium GD 1] Length = 551 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 108/326 (33%), Gaps = 31/326 (9%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + I + + L + + + L + QV + V + V + Sbjct: 194 TAQDIYQASAPIINKNAGLVTVTATLKQMNRLEGYLKKLQDKVQLQVLIDVQLLSVTMEE 253 Query: 210 LKQIGFQHS------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 K G S + + + S+ V + + Sbjct: 254 GKTTGVDWQQLYALQKVTLSANYLSKNNVPTFTGTEITTAGAQAVNEASLVTVKAGGTLD 313 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------------T 305 V+ L+ + +++ P + ++ Q A T+G ++ YK S + Sbjct: 314 EVIKFLQTQGDVVSISNPKVLTLNNQPALITAGTEYFYKIKSETNQQGTGGGVAATTQND 373 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKADTT 359 +V + GV+L TP + I L+I +SE ++ P R+ + Sbjct: 374 TVQSVFAGVLLDITPEIADDKSITLKINPSLSETAQDISQESSANRVMPPDLNRRQLSSV 433 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + G I+L GL+ +PLL IP L LF+ ++ E+ I P ++ Sbjct: 434 VTVKDGNRIILGGLINTKNVNKSNKVPLLGDIPGLSYLFKYEEMTKQIQELVIVIEPHII 493 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFF 445 A +LS + Y D Sbjct: 494 D-KANNNLSLAELGYKGITDHTVILN 518 >gi|253988518|ref|YP_003039874.1| type III secretion outer membrane protein pscc [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637900|emb|CAR66529.1| type iii secretion outer membrane protein pscc [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779968|emb|CAQ83129.1| type iii secretion outer membrane protein pscc [Photorhabdus asymbiotica] Length = 618 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 53/363 (14%), Positives = 121/363 (33%), Gaps = 24/363 (6%) Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDIL---IERDIAHLEMTLRRFIADSNIRVEMV 141 + L + G + + +++ I + + L R ++D+N+ Sbjct: 174 QQSLLRSEKTGALTIEIFPLKYASVVDRKIQYRDTNIEAPGIATVLSRLLSDANVTTVT- 232 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 + G + + +A + + + + + ++N L+ + + ++ Sbjct: 233 GEMSSSTGGNHSSRAVIQAEPSLNAIIVRDNPERMSMYTH--LINALDKPSAR-IEVALS 289 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----------GKFVSEGGDFSVKGV 250 I ++ D L ++G + ++ G+ + S+ Sbjct: 290 IVDINADNLSELGVDWQVGINTGPRHIIDITTSAREKEKEKNGGKGESIGSTALGSLVDR 349 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + LE + + ++ PTL A + K + + Sbjct: 350 RGLDYLLAKITLLESKGSAQVVSRPTLLTQENTQAVIDHNETYYVKV--EGERVAELKSL 407 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGG 366 YG +L TP V+ G I L + E + G +P+ DT + G Sbjct: 408 TYGTMLRMTPRVIKIGDTPEISLNLHIEDGNQKPNSSGLGGIPTINRTIVDTVARVGHGQ 467 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G+ +D++ + +P L IP LG LFR + + P L+ Sbjct: 468 SLLIGGIYRDEMSETVRKVPFLGDIPYLGVLFRTTTEQVRRSVRLFIIEPRLIDSGVANY 527 Query: 427 LSR 429 L+ Sbjct: 528 LAL 530 >gi|124268320|ref|YP_001022324.1| general secretion pathway protein D [Methylibium petroleiphilum PM1] gi|124261095|gb|ABM96089.1| general secretion pathway protein D [Methylibium petroleiphilum PM1] Length = 736 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 97/291 (33%), Gaps = 41/291 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 V++ L+ QV ++ + EV G Q G Sbjct: 397 SVIDQLDAR-RAQVYVETMLVEVNATKAADAGIQWQGLIGKDGDKTGLIGGTNFGTGGDN 455 Query: 236 ----------------GKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLT 278 G S G + V ++ + LE L+ P L Sbjct: 456 IINLSIAAAQGGTAVSGNLPSAGLNLGVIRRFAGVYTLGALARFLETNADGNILSTPNLV 515 Query: 279 AISGQSASFTSGGQHLYKTVS---------SSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + + A G + T S ++ ++ D G+ L P + G + Sbjct: 516 TLDNEEAKIVVGQNVPFVTGSFTSTGTGSGATNPFQTIERRDVGITLRVKPQIGENGTVR 575 Query: 330 LRIQTEVSEPVIGVNAGDMP------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + I E S V + + R ++TV + G +V+ GL++D Q Sbjct: 576 MTIYQEASSVVNQNVSQGVADATAGLVTNKRSIESTVVVNDGDILVMGGLMQDQFQDNSS 635 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +P L ++P +GALFR+ R ++ + + P +++ + + D Y Sbjct: 636 RVPGLGRLPGIGALFRSDNRTRTKSNLMVFLRPQVMRSAESSN-ALSLDRY 685 >gi|297539729|ref|YP_003675498.1| type IV pilus secretin PilQ [Methylotenera sp. 301] gi|297259076|gb|ADI30921.1| type IV pilus secretin PilQ [Methylotenera sp. 301] Length = 728 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 3/189 (1%) Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 ++ + +S+ L A+E + ++ P +T + A +G Sbjct: 537 SNLAVANATGSIAYSIFSKAAGLVLNMELTAMESDGHGKIVSSPRVTTANQHKAKIAAGT 596 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 + Y SSS AT V+ + L TP + +I + + +V + +G +PS Sbjct: 597 EIPYLEASSSGAAT-VSFKSAVLSLEVTPQITPDDKIIMEL--DVKKDRVGQVFSGVPSI 653 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + +T V + +G T VL G+ + ++ E +P +PI+G LF+ ++ E+ Sbjct: 654 ETQNINTQVLVGNGETAVLGGIFEQTVRNDVEKVPFFGDLPIMGNLFKKRTTQNDKQELL 713 Query: 412 IAATPFLVK 420 I TP ++ Sbjct: 714 IFITPRIMD 722 >gi|33596848|ref|NP_884491.1| putative type III secretion protein [Bordetella parapertussis 12822] gi|33573549|emb|CAE37540.1| putative type III secretion protein [Bordetella parapertussis] Length = 600 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 81/249 (32%), Gaps = 11/249 (4%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-----SVKGV 250 + ++ I +V D++ ++G ++ G + G G+ Sbjct: 300 IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPVDGAAAELAPGTLGI 359 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L ALE L++P++ A +T+ +VT Sbjct: 360 SVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIRTL--GERVATVTPV 417 Query: 311 DYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 G L TP + ++ L I E + +P R T + T Sbjct: 418 TVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRKSSISTLAVVGDEQT 477 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +++ G ++ E +PLL IP LG LF + + E P +V + + + Sbjct: 478 LLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFLIRPRVV-AIEGKPV 536 Query: 428 SRPDDHYSV 436 P S Sbjct: 537 FSPVAGTSQ 545 >gi|157363362|ref|YP_001470129.1| type II and III secretion system protein [Thermotoga lettingae TMO] gi|157313966|gb|ABV33065.1| type II and III secretion system protein [Thermotoga lettingae TMO] Length = 1179 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 63/315 (20%), Positives = 126/315 (40%), Gaps = 39/315 (12%) Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS--QRAVELSETFLS 169 + ++ ++ + + ++ ++D +V+ G+ + ++D Q +++++ Sbjct: 895 FVYTLPHNLDRIKSLIE--FYGGKVYIDELNDLMVVTGLSKKMKDQLDQTILQIAQPL-- 950 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 Q+ ++ + V R ++ +I Q+S++ S G + Sbjct: 951 ------------------------KQIEIEAKL--VDRSLIDEITRQNSLSISLPGQAPE 984 Query: 230 FAADFGGKFVSEGGDFSV-----KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 +S L S V LA P + SG+ Sbjct: 985 ITVSSTSLSLSTSVINLFDYQKLFSYLSGASVTAVFELNNSNNLDNLLASPRIVTSSGKE 1044 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A G + Y+ + G V D G+ L TP V + G I L I T+VS+P N Sbjct: 1045 ARILIGDRVPYQ-TIDADGNVIVNFLDTGIELRITPYVRTDGTIELNIFTKVSKPTYYPN 1103 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 D+P R+ +T V L +G T+V+ GL+++ ++ +P L +P +G LFR+ Sbjct: 1104 -IDIPGESTRETETDVILKNGDTLVIGGLMRETKEETSAKMPFLGDLPFIGQLFRSKTEK 1162 Query: 405 REETEIFIAATPFLV 419 ++ E+ I T ++ Sbjct: 1163 ADKRELLIFITARVI 1177 >gi|33600622|ref|NP_888182.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33568221|emb|CAE32134.1| putative type III secretion protein [Bordetella bronchiseptica RB50] Length = 600 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 81/249 (32%), Gaps = 11/249 (4%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-----SVKGV 250 + ++ I +V D++ ++G ++ G + G G+ Sbjct: 300 IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPVDGAAAELAPGTLGI 359 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L ALE L++P++ A +T+ +VT Sbjct: 360 SVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIRTL--GERVATVTPV 417 Query: 311 DYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 G L TP + ++ L I E + +P R T + T Sbjct: 418 TVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRKSSISTLAVVGDEQT 477 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +++ G ++ E +PLL IP LG LF + + E P +V + + + Sbjct: 478 LLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFLIRPRVV-AIEGKPV 536 Query: 428 SRPDDHYSV 436 P S Sbjct: 537 FSPVAGTSQ 545 >gi|298527693|ref|ZP_07015097.1| type II and III secretion system protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511345|gb|EFI35247.1| type II and III secretion system protein [Desulfonatronospira thiodismutans ASO3-1] Length = 553 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 98/271 (36%), Gaps = 31/271 (11%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + + L QV + I EV Q+G S + +++ + G + Sbjct: 281 VANNFIKQLKSKLSQQVVIDAQILEVSLSDSFQLGVDWSYISQELASNFAYSVNLGWQSA 340 Query: 240 SEGGDFSVKGVLDRF---------------SFETVLHALERATAIRTLAEPTLTAISGQS 284 G + ++ F + ALE + ++ P + + Q Sbjct: 341 QGFGTYGLESEDPVPIVIDSRTGDVDEVYRQFSATIQALETFGQVSVVSNPHVRSRHLQP 400 Query: 285 ASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 A TSG + + + + T GV+L P + G + L I Sbjct: 401 ALVTSGTTRNFIQEITRSRRATDEDWVDYSVNTGTAFEGVMLGVVPFITDNGDVDLDIFP 460 Query: 335 EVSEPVIGVNA------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 S+ + A +P VR +T V + G T++L GL++ ++ + P Sbjct: 461 ITSQVDLSETAKIGGDQITLPKVNVRNVNTKVRVNDGDTVILGGLIQKGSRERERATPGA 520 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 S+IP LG LF+ +++ +E+ + +V Sbjct: 521 SRIPGLGWLFKQREDSQDLSELVVIMHVRVV 551 >gi|207739033|ref|YP_002257426.1| general secretion pathway gspd-related protein [Ralstonia solanacearum IPO1609] gi|206592404|emb|CAQ59310.1| general secretion pathway gspd-related protein [Ralstonia solanacearum IPO1609] Length = 761 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 66/460 (14%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV--- 79 AK P + A + + + + I+ L+K + + V + D Sbjct: 180 AAKQPINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDL 236 Query: 80 ---------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 + + T+ ++ + ++ L + L+ Sbjct: 237 ILSTTQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNAEAKQTGAMLKTM 291 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + ++ ++ VV+ +S V L+E + RN +V+ + + Sbjct: 292 LKIREPYIDERANMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS- 343 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 L Q+G Q+ + + + S + A Sbjct: 344 -----------------TKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNS----DR 382 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSV 307 + + VL+ LA P + A + + A G + T +S++ + SV Sbjct: 383 IGVSTPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESV 442 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPS 364 D G+ L P++ + ++I EVS + + R A+T ++L Sbjct: 443 QYIDVGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHD 502 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP Sbjct: 503 GETQLLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP--- 559 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 + E + F+ + + + Sbjct: 560 --------SHRPETNFMEFWSGTETNARARRTLPDGQAPA 591 >gi|37527640|ref|NP_930984.1| Type III secretion component protein SctC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787075|emb|CAE16150.1| Type III secretion component protein SctC [Photorhabdus luminescens subsp. laumondii TTO1] Length = 614 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 52/358 (14%), Positives = 120/358 (33%), Gaps = 33/358 (9%) Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDIL---IERDIAHLEMTLRRFIADSNIRVEMV 141 + L + G V + +++ I + + L R ++D+N+ Sbjct: 171 QQSLLRSEKTGALTVEIFPLKYASVVDRKIQYRDTSIEAPGIATILSRLLSDTNVTA--- 227 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK------VMNLLNIAGEDQ 195 + G + + + S + ++ ++N L+ Sbjct: 228 -----VTGEASSPSMGESYSSRAVVQAEPSLNAIIVRDNPERMSMYAHLINALDKPSAR- 281 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDFS 246 + + ++I ++ + L ++G + ++ G+ + S Sbjct: 282 IEVALSIVDIDANNLSELGVDWQVGINTGPRHIIDITTSAREKTEIKEKGESIGSAALGS 341 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + LE + + ++ PTL A + + K + Sbjct: 342 LVDRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQAVIDNNETYYVKV--NGERVAE 399 Query: 307 VTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVEL 362 + + YG +L P V+ G I L + E ++ +P+ DT + Sbjct: 400 LKSLTYGTMLRMIPRVIQVGDSSEISLDLHIEDGNQKPNSSGQDGIPTISRTVVDTVARV 459 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G ++++ G+ +D++ Q+ +P L IP LG LFRN+ + P L+ Sbjct: 460 GHGQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNTSEQVRRSVRLFIIEPRLID 517 >gi|197121137|ref|YP_002133088.1| general secretion pathway protein D [Anaeromyxobacter sp. K] gi|196170986|gb|ACG71959.1| general secretion pathway protein D [Anaeromyxobacter sp. K] Length = 904 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 109/321 (33%), Gaps = 57/321 (17%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V+ D + L + + Q QV ++ I EV Sbjct: 451 SGEVKITADKTQNALLVQASGADFSAVQRLVEKLD--------RPRRQVFVEAVIMEVNL 502 Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247 ++G S TG + S A GG G S Sbjct: 503 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVNSLDMSSAIALGGFLTGYTGPISAEL 562 Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-- 303 G + S ++ AL+ + + L+ P L A + + T G +++ + +G Sbjct: 563 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPSGLS 622 Query: 304 ------------------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + + + L P + G I L I+ E +E Sbjct: 623 NLLSGSSATSTVGSALGTQGLSSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQTEE 681 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + P+ R T + TIV+ GL++D + IP L +PILG LFR Sbjct: 682 IAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFR 741 Query: 400 NSRFNREETEIFIAATPFLVK 420 ++ +++ + + TP++++ Sbjct: 742 DTTTTKQKVNLLLFLTPYIIR 762 >gi|313683362|ref|YP_004061100.1| type ii and iii secretion system protein [Sulfuricurvum kujiense DSM 16994] gi|313156222|gb|ADR34900.1| type II and III secretion system protein [Sulfuricurvum kujiense DSM 16994] Length = 494 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 102/262 (38%), Gaps = 29/262 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + L QV ++ + E+ + IG S S + + + + Sbjct: 223 EQYLAALKKRMHQQVMIEAHLIELTYNDYSSIGVNWS------NFSLALNGSYTNSYNNI 276 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G V F+ ++ L++ + L+ P + +S Q A G Q Y + S Sbjct: 277 GTAHPVYSFGIDFNPTGLIDFLKQYGDVEVLSNPKVLTLSNQPAIINVGKQLSYLYQNGS 336 Query: 302 ---------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---- 348 T ++ + G+ L+ P V G I +RI SE + Sbjct: 337 IIGTTSTPTTVTNTLGSVFVGLTLNIIPEVSEDGYIIMRINPVSSELLSDSELSSSSSQT 396 Query: 349 ----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P RV++ + V++ +++ GL++ + + +PLL IP+ G LF Sbjct: 397 SQTQTDRVMPPDTRVKQMSSIVKVKDSQKVLIGGLIEKKNYKNQTKVPLLGDIPLFGKLF 456 Query: 399 RNSRFNREETEIFIAATPFLVK 420 NS ++E+FI TP LVK Sbjct: 457 HNSTDTIRKSELFILITPILVK 478 >gi|71899610|ref|ZP_00681765.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] gi|71730652|gb|EAO32728.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] Length = 775 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 112/291 (38%), Gaps = 41/291 (14%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235 V+ L++ QV ++ +AEV G S +G S G Sbjct: 474 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 532 Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S G K + + +++AL++ T +R L P++ + Sbjct: 533 AGLPSAAGRSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 592 Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A+ G + + S +TG +SV D GV+L P V G + L I EVS Sbjct: 593 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 652 Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 P + +A R+ T + SG TI+LAGL+ + + G+ Sbjct: 653 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 712 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 P LSK+PI+G LF N EI + TP +V+ ++ D YS Sbjct: 713 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 761 >gi|222823425|ref|YP_002574999.1| type II protein secretion system D protein CtsD [Campylobacter lari RM2100] gi|222538647|gb|ACM63748.1| putative type II protein secretion system D protein CtsD [Campylobacter lari RM2100] Length = 463 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 24/275 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K + LN + QV + V+I V + G + F+ Sbjct: 196 EKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQDLAFKLNGDDN-------DFIIN 248 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + +L+ L+ L+ P L A++ Q A + G Y+ SS Sbjct: 249 KGGVKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESS 308 Query: 302 TGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA------- 345 G + TT G++L+ P + +I LRI +S+ V+ Sbjct: 309 KGTENGTTISETYNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPR 368 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P +K T VE+ G T++L GL+ + + LSKIP+ GALF+ + Sbjct: 369 NIAPDTIQKKLSTVVEVDDGQTLILGGLISKNTISNHNEVSALSKIPLFGALFQGKQNLE 428 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 + +EI P L++ + LS + + EDD Sbjct: 429 DISEIVFIIKPSLIRA-DKKVLSLKELGFEHEDDM 462 >gi|33593235|ref|NP_880879.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|29603239|emb|CAC79584.1| bscC [Bordetella pertussis Tohama I] gi|33563610|emb|CAE42511.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|332382644|gb|AEE67491.1| putative type III secretion protein [Bordetella pertussis CS] Length = 600 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 81/249 (32%), Gaps = 11/249 (4%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-----SVKGV 250 + ++ I +V D++ ++G ++ G + G G+ Sbjct: 300 IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPVDGAAADLAPGTLGI 359 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L ALE L++P++ A +T+ +VT Sbjct: 360 SVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIRTL--GERVATVTPV 417 Query: 311 DYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 G L TP + ++ L I E + +P R T + T Sbjct: 418 TVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRKSSISTLAVVGDEQT 477 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +++ G ++ E +PLL IP LG LF + + E P +V + + + Sbjct: 478 LLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFLIRPRVV-AIEGKPV 536 Query: 428 SRPDDHYSV 436 P S Sbjct: 537 FSPVAGTSQ 545 >gi|71274709|ref|ZP_00650997.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Dixon] gi|170730050|ref|YP_001775483.1| general secretory pathway protein D [Xylella fastidiosa M12] gi|71164441|gb|EAO14155.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Dixon] gi|167964843|gb|ACA11853.1| general secretory pathway protein D precursor [Xylella fastidiosa M12] Length = 775 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 112/291 (38%), Gaps = 41/291 (14%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235 V+ L++ QV ++ +AEV G S +G S G Sbjct: 474 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 532 Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S G K + + +++AL++ T +R L P++ + Sbjct: 533 AGLPSAAGRSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 592 Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A+ G + + S +TG +SV D GV+L P V G + L I EVS Sbjct: 593 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 652 Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 P + +A R+ T + SG TI+LAGL+ + + G+ Sbjct: 653 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 712 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 P LSK+PI+G LF N EI + TP +V+ ++ D YS Sbjct: 713 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 761 >gi|124515780|gb|EAY57289.1| putative general secretion pathway protein D [Leptospirillum rubarum] gi|206602163|gb|EDZ38645.1| Putative general secretion pathway protein D [Leptospirillum sp. Group II '5-way CG'] Length = 555 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 8/207 (3%) Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 ++G ++S G G G ++ S T+L+AL+ + ++TL+ P + A Sbjct: 292 GAAGAAQSLTGLTGLIAGVLTGGSFNYGGVNYPSIGTLLNALQTDSDVKTLSTPEILATD 351 Query: 282 GQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 Q A T G + T S T + + G+ L TP +L+ R+ L ++ ++ Sbjct: 352 SQKAKITVGEDVPFITGQSQTVGGNVMTMIQRQNVGITLDITPHILAHDRVRLNLKQTIT 411 Query: 338 EPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 P+ R T + + SG T+V+ GL+ + K IP L +IP+ Sbjct: 412 ALTNASQLIGTMAVGPTTTKRSTKTILTVRSGQTVVIGGLISSEKSLNKSTIPWLGEIPV 471 Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420 LG LF +++ ++ ++ I TP++++ Sbjct: 472 LGYLFSSTQNEKKRDDLLIFLTPYIIR 498 >gi|226944981|ref|YP_002800054.1| type II and III secretion system protein [Azotobacter vinelandii DJ] gi|226719908|gb|ACO79079.1| type II and III secretion system protein [Azotobacter vinelandii DJ] Length = 614 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 78/461 (16%), Positives = 157/461 (34%), Gaps = 64/461 (13%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P E A + + + + ++ ++ + + + V D+ Sbjct: 188 PVSLEFREANLKLVFEVLAQTAGMNFIFDQDVSPDLKATIYVRQVPIEEAVDLLLQQGQL 247 Query: 80 --VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 V + T+ ++ + + +L L D ++ + ++ Sbjct: 248 KHKVVNENTVLIYPNTP-----QKLKDYQELVLKTFYLTNIDANTALNMVKTLLKTRDVF 302 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V+ +T+ + AV L+E + V Sbjct: 303 VDERLNTLTMRDTP-------DAVHLAERLFLAQDQANPE------------------VV 337 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 L++ + EV R + +G Q T + A G+ + S Sbjct: 338 LELEVMEVSRKRILDLGLQWPNTFGILAEDGTSAVSILGQLR----GIDSDRINFSPSPT 393 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHD 311 ++A + + TLA P L + + A G + + +S+ ++T D Sbjct: 394 LKINA--NDSDVNTLASPVLRVSNREQARIHIGERVPVVSATSTPSTQGPVITENITYLD 451 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMP-SYRVRKADTTVELPSGGTI 368 G+ L PT+ + +++ EVS AG +P R A TT+ L +G T Sbjct: 452 VGLKLEVEPTIHLNDEVAIKVGLEVSNATQLTRTEAGTIPIQVDTRNAVTTLRLRNGETQ 511 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 VLAGL+++D + + IP L IP +G LF +++ ++E+ ++ TP +V+ + Sbjct: 512 VLAGLMRNDQGKSGDRIPGLGDIPGIGRLFGSNKDTLSKSELVLSITPRIVRNLP----- 566 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 Y D + + P G +G Sbjct: 567 -----YQNPYDMEFESGTESSLRLRPAALPRKAGAALRGQA 602 >gi|254785258|ref|YP_003072686.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901] gi|237687142|gb|ACR14406.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901] Length = 570 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 99/260 (38%), Gaps = 24/260 (9%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVS 240 + ++ QV L+ I EV+ + + G + G S + G K Sbjct: 284 LERSELSVRRQVVLETKIIEVQLNDGYEAGVNWGAITGALGVASDSSLVMTNNDGVKSKI 343 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS- 299 + GVL+ E +L+ LE ++ L+ P ++ ++ Q A G + T Sbjct: 344 RTTQNLLSGVLNVTRIEDLLNLLETQGNVQVLSSPRISTVNNQKAIIRVGTDEFFVTGIT 403 Query: 300 ----------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 ++ + + G+ L TP + G + + + VS+ + + Sbjct: 404 NNTTTTASNIQNSPEVLLDSFFSGIALDVTPQIAEDGDVIIHVHPLVSKVQDQLKDISIG 463 Query: 350 SYR---------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 VR++D+ V +G +VL GL+++ + P L IP + LF+ Sbjct: 464 DLDYSLPLALRDVRESDSIVRASNGQVVVLGGLMQETTSDVATKRPFLGDIPGVNVLFKG 523 Query: 401 SRFNREETEIFIAATPFLVK 420 + +TE+ I P +V Sbjct: 524 RAKRKVKTELVILMRPIVVD 543 >gi|307823412|ref|ZP_07653641.1| type II and III secretion system protein [Methylobacter tundripaludum SV96] gi|307735397|gb|EFO06245.1| type II and III secretion system protein [Methylobacter tundripaludum SV96] Length = 554 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 87/251 (34%), Gaps = 17/251 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + ++ QV L+ I EV D Q G GG Sbjct: 273 ESFLSATQTQISRQVILEAKILEVTLDDNHQDGVNWESIVKEGINKAPLLTGIGGVMDPN 332 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 F + +E L+ P ++ ++ QSA G + T + Sbjct: 333 TFASVFTLGAHSGDFRAFVELMETQGKTNVLSSPRISTLNNQSAIIKVGQDEYFATGFNG 392 Query: 302 T-----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--- 347 + G+ L TP + I L I +S+ Sbjct: 393 GTPGATGVAPTAPTVLIDVFFSGISLDVTPQIDDNEDITLHIHPSISQVKKDTKDFGLDI 452 Query: 348 ---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 + VR++D+ V+ +G IVL GL++++ + K+G+ L+ IP +G LFR + Sbjct: 453 TLPLALTTVRESDSIVKAKNGQIIVLGGLMQENDNEKKQGVTGLAAIPYIGNLFRVNTGT 512 Query: 405 REETEIFIAAT 415 +++E+ I Sbjct: 513 TQKSELIILLK 523 >gi|297181980|gb|ADI18156.1| type II secretory pathway, component puld [uncultured Verrucomicrobiales bacterium HF0200_39L05] Length = 800 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 100/314 (31%), Gaps = 66/314 (21%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---------------------------------G 221 QV ++ I V ++G + Sbjct: 437 QVLIEAIIVNVTLTDGMEMGVNAFMHEAAGPGDTRHIGGFMNGGPSTAGAAPSTPPTVNN 496 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--------FETVLHALERATAIRTLA 273 + ++ + G + FS E + AL +++ + L Sbjct: 497 GAEQGGGDNVSNVAAAAGNALGSLGAGALSGGFSYISRYDNSLEFAMSALANSSSAKVLQ 556 Query: 274 EPTLTAISGQSASFTSGGQHLYKTV----------------SSSTGATSVTTHDYGVVLH 317 P + A+F +G Q Y+ G + G+ L Sbjct: 557 TPRVQTSHAVPATFFNGEQVPYQGSSGYGGYGGGYGGYGGYGGYGGGGYTQFLNVGITLD 616 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTI 368 TP + + + IQ +SE ++ G P R+A +TV + G TI Sbjct: 617 VTPYITPDDLVVMEIQQTISELDGFIDMGGGQQGSSGMKAPQTTEREAASTVSVRDGDTI 676 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +L G +++ + G+P L IP+LG LF+N + +E+ + P ++K L Sbjct: 677 LLGGFIRNSKTGTESGVPFLKDIPLLGNLFKNESNTNKRSELLVLIRPTILKSPEDAALI 736 Query: 429 RPDDHYSVEDDAKA 442 + + +A Sbjct: 737 VSQERQRLPGIREA 750 >gi|220915838|ref|YP_002491142.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans 2CP-1] gi|219953692|gb|ACL64076.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans 2CP-1] Length = 902 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 60/323 (18%), Positives = 109/323 (33%), Gaps = 59/323 (18%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V+ D + L + + Q QV ++ I EV Sbjct: 451 SGEVKITADKTQNALLVQASGADFSAVQRLVEKLD--------RPRRQVFVEAVIMEVNL 502 Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247 ++G S TG + S A GG G S Sbjct: 503 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVNSLDMSSAIALGGFLTGYTGPISAEL 562 Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-- 303 G + S ++ AL+ + + L+ P L A + + T G +++ + +G Sbjct: 563 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPSGLS 622 Query: 304 --------------------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + + + L P + G I L I+ E + Sbjct: 623 NLLSGSGTGASSTVGSALGTQGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQT 681 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 E + + P+ R T + TIV+ GL++D + IP L +PILG L Sbjct: 682 EEIAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWL 741 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 FR++ +++ + + TP++++ Sbjct: 742 FRDTTTTKQKVNLLLFLTPYIIR 764 >gi|15838128|ref|NP_298816.1| general secretory pathway protein D precursor [Xylella fastidiosa 9a5c] gi|9106563|gb|AAF84336.1|AE003982_9 general secretory pathway protein D precursor [Xylella fastidiosa 9a5c] Length = 775 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 112/291 (38%), Gaps = 41/291 (14%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235 V+ L++ QV ++ +AEV G S +G S G Sbjct: 474 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 532 Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S G K + + +++AL++ T +R L P++ + Sbjct: 533 AGLPSAAGRSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 592 Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A+ G + + S +TG +SV D GV+L P V G + L I EVS Sbjct: 593 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 652 Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 P + +A R+ T + SG TI+LAGL+ + + G+ Sbjct: 653 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 712 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 P LSK+PI+G LF N EI + TP +V+ ++ D YS Sbjct: 713 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 761 >gi|15606504|ref|NP_213884.1| general secretion pathway protein D [Aquifex aeolicus VF5] gi|2983708|gb|AAC07271.1| general secretion pathway protein D [Aquifex aeolicus VF5] Length = 625 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 103/261 (39%), Gaps = 26/261 (9%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 Q+ L TI E + + G + I G+ G + ++ + G+F + G Sbjct: 331 KRRKQLLLTATIIEASAKSILEAGIRWQILGTHGGAAFKGSSLQDVYNAIKSGNFVIGGF 390 Query: 251 LDRF-------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + LE+ T ++ P + + Q A G + T Sbjct: 391 SKSGTTVSIGGIDFFFPDLVFLFSLLEQGTGFNVVSNPKILTLDNQEALIKVGQVVPFPT 450 Query: 298 VS----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGD 347 + + D G+ L TP + + L I+ ++ E + Sbjct: 451 GIKYDVNGNPIITYDYKDVGLELKITPRITGE-TVRLVIELKLQEITGYLTNEVSGVNYT 509 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P R+ ++ V + +G T+V+ GL+ + E IP L IP++G LFR R +++ Sbjct: 510 VPITSNRELNSDVVVENGRTVVIGGLISRKSLKSTEKIPGLGDIPVMGRLFRYDRDEKDK 569 Query: 408 TEIFIAATPFLVKPVAMRDLS 428 T +FI TP+++ + ++L+ Sbjct: 570 TSLFIFLTPYVI--TSPQELA 588 >gi|323388142|gb|ADX60338.1| outer membrane type III secretion porin RscC [Pseudomonas fluorescens] Length = 713 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 91/288 (31%), Gaps = 18/288 (6%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L R + +++++ L++A + V + I ++ Sbjct: 285 LTPRAPVSTSKIRVEADVRNNAILIYDLPERQAMYRELISQLDVARKL-VEIDAIILDIE 343 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 R L++ G + S + A + + R F + ALE+ Sbjct: 344 RTQLREFGIRWGFQNSRFRGGVNMAPGSSSQL----------SIEHRDRFNADIRALEQR 393 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL--- 323 ++ P++ + Q A + + +T G P V+ Sbjct: 394 GLATMVSNPSVLTLENQPAVIDFNRTQYLTAGTETATILPIT---VGTSFQVVPRVITTR 450 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +I L + E A P R K T + ++V+ G + + Sbjct: 451 GNHQIHLVVDIEDGNFDESNPARTSPDVRRGKVSTQAVMAEKRSLVVGGFHVTESTDKQS 510 Query: 384 GIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IPLL IP+LG ALF +S E TP ++ A P Sbjct: 511 KIPLLGDIPLLGKALFSSSERQNNRRERLFILTPRVIGDQADPSRYLP 558 >gi|171060554|ref|YP_001792903.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] gi|170777999|gb|ACB36138.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] Length = 760 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 65/429 (15%), Positives = 138/429 (32%), Gaps = 69/429 (16%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P E A + + + + I+ +++ + + + V D D Sbjct: 182 PVTLEFRDAPLKLVLEALARSAGINFIMDREVRPDLK---ASIFVRDVRVEDALDLLIHN 238 Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + + T+ ++ + + ++ + D LR + Sbjct: 239 HQLEKKILTDNTVLVYPNTP-----QKLREHQELVMRTFHIGNADPKQTLNLLRTMLKVR 293 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 ++ ++ + + L I+ ++R ++ + Sbjct: 294 DVFIDERVNLLFLRDTPDVIRAAERL--IAAQDKADPE---------------------- 329 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 V L++ I EV R ++ +G + + G S + + G + Sbjct: 330 -VVLELEILEVSRTKVRDLGITYPSEFAGPGSSGAKLFEIG----------ELNRRTIGV 378 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------- 305 L L +TLA P + + + A G + + + Sbjct: 379 DTGYKLKLLRTDGDTKTLANPRVRVRNREKARVHVGDRVPVISSTIVGTTNLGSNNTPVT 438 Query: 306 --SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360 + D G+ + PT+ + + + I +VS R A T + Sbjct: 439 TEQIQYLDVGIKIEAEPTIYADDSVAISINLDVSSLGNQTRTNAGTTAYEVGTRNASTVL 498 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G T L GL++DD Q G+P L + P+L +F + R +R E+ + TP LV+ Sbjct: 499 RLRDGETQALMGLIRDDDVQTGAGLPYLGEFPVLDRIFGSKRTDRRSRELVLLITPQLVR 558 Query: 421 PVAMRDLSR 429 + D + Sbjct: 559 GIEPADATL 567 >gi|134095138|ref|YP_001100213.1| mannose-sensitive hemagglutinin L [Herminiimonas arsenicoxydans] gi|133739041|emb|CAL62089.1| Putative general secretion pathway protein D [Herminiimonas arsenicoxydans] Length = 581 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 108/331 (32%), Gaps = 58/331 (17%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L +V + +D + V ++ + S + ++ + QV L+ I EV Sbjct: 223 LDAIVGSGKDGRSVVISPQSGVVVVKAMPDELRSVSAYLKATQLSVDRQVILEAKILEVE 282 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------------ 254 + Q G S + S + G + G + +D Sbjct: 283 LNDGFQTGVNWSAFRTGSSRISGGSISPGTVLQTGGSLATGASSIDATARTFSGGQLTAL 342 Query: 255 -----------------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 +F ++ LE + L+ P + ++ Q A G Sbjct: 343 PGQDLLSGVSNLGSMFGLALQTKNFAALISFLETQGNVHVLSSPRIATLNNQKAVLKVGT 402 Query: 292 QHLYKTVSSST------------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + T SS ++ GVVL TP + G I L I VS+ Sbjct: 403 DEFFVTNVSSNITSSGTGGNTVTPNVTLQPFFSGVVLDVTPQIDEQGNIILHIHPSVSDV 462 Query: 340 VIGVNAGDMPS-----------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 ++ + + D+ V G I L GL++ + +P Sbjct: 463 QTSEKVINLGTGGGVLTLPLAKSNTSETDSVVRAQDGNIIALGGLMRQGTSSDRSQLPGA 522 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+LG LFRN+ + ++ E+ I P ++ Sbjct: 523 GDVPVLGNLFRNTNQSTQKRELVILLKPTII 553 >gi|307579783|gb|ADN63752.1| general secretion pathway protein D [Xylella fastidiosa subsp. fastidiosa GB514] Length = 721 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 111/291 (38%), Gaps = 41/291 (14%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235 V+ L++ QV ++ +AEV G S +G S G Sbjct: 420 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 478 Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S K + + +++AL++ T +R L P++ + Sbjct: 479 AGLPSAAARSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 538 Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A+ G + + S +TG +SV D GV+L P V G + L I EVS Sbjct: 539 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 598 Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 P + +A R+ T + SG TI+LAGL+ + + G+ Sbjct: 599 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 658 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 P LSK+PI+G LF N EI + TP +V+ ++ D YS Sbjct: 659 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 707 >gi|86157114|ref|YP_463899.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773625|gb|ABC80462.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 897 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 61/323 (18%), Positives = 108/323 (33%), Gaps = 59/323 (18%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V+ D + L + + Q QV ++ I EV Sbjct: 446 SGEVKITADKTQNALLVQASGADFSAVQRLVEKLD--------RPRRQVFVEAVIMEVNL 497 Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247 ++G S TG S S A GG G S Sbjct: 498 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVSSLDMSSAIALGGFLTGYTGPISAEL 557 Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-- 303 G + S ++ AL+ + + L+ P L A + + T G +++ + G Sbjct: 558 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPQGLS 617 Query: 304 --------------------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + + + L P + G I L I+ E + Sbjct: 618 NLLSGSGTGGSSTVGAALGTQGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQT 676 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 E + + P+ R T + TIV+ GL++D + IP L +PILG L Sbjct: 677 EEIAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWL 736 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 FR++ +++ + + TP++++ Sbjct: 737 FRDTTTTKQKVNLLLFLTPYIIR 759 >gi|239905312|ref|YP_002952051.1| hypothetical protein DMR_06740 [Desulfovibrio magneticus RS-1] gi|239795176|dbj|BAH74165.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 707 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 7/224 (3%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G G + S G + G + G + E L AL + ++ L+ Sbjct: 474 GTSGQGFGLNFPALSSALTSASGLGAAGAGVNFLFGNIAGNVLEAQLTALAESNKVKILS 533 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 PT+T + SA +G Y + S + T+V + L P V+ + ++I Sbjct: 534 SPTITTMENHSAFVENGMDVPYVSTSQNG--TNVQFAHATLKLEMLPHVVDNSNLRMKIV 591 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + + P R+ + + + G TIV++GL +D + + G+P LS IP Sbjct: 592 VKDDQVDTTNTVQGNPFIYKRETQSNLVVEDGDTIVISGLTRDTVGDNEAGVPYLSDIPG 651 Query: 394 LGALFRNSRFNREETEIFIAATPFL-----VKPVAMRDLSRPDD 432 LG F+ + + EI+I TP + + P + RP D Sbjct: 652 LGWAFKTKASSIKREEIYIFVTPTILKEKPISPPPAVAMIRPSD 695 >gi|238793311|ref|ZP_04636937.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia intermedia ATCC 29909] gi|238727280|gb|EEQ18808.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia intermedia ATCC 29909] Length = 486 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 109/301 (36%), Gaps = 30/301 (9%) Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194 + V L G+V +++ + ++ L S+ N + I Sbjct: 184 QYRDQQVKLPGLVSVLREMSQGNSLPLVAGKEPDDVNTSMPLFSADPRQNAVIIRDRQVN 243 Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 Q+ + VTI +V + Q+G S + S G SF ++ G Sbjct: 244 MPIYRSLIAQLDQRPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSNSG--- 300 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 D + D +F L+AL++ + R L+ P++ ++ A K Sbjct: 301 -KNSADGFSTVIGDTGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL- 358 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP ++ + L + + + +++ + +P + Sbjct: 359 -QGDKVAKLESITSGSLLRVTPRMIDADGVKEVLLNLNIQDGQQQAAISSSEPLPEIQNS 417 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T L G +++L G ++D + + IPLL IP+LG LFR++ Sbjct: 418 DISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 477 Query: 415 T 415 Sbjct: 478 K 478 >gi|301064238|ref|ZP_07204681.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2] gi|300441683|gb|EFK06005.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2] Length = 756 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 100/278 (35%), Gaps = 30/278 (10%) Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------ 224 + + K+++ L++ E QV ++ I E D + +G Q S Sbjct: 478 ANGVRAKVDKVKELVRKLDVP-EKQVMIETRIVEATTDFARDLGIQWQSLDGSRPGVQRK 536 Query: 225 -----------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G + A G + + G L + + L + + ++ Sbjct: 537 WYNSDGTERFDGSFSTNAPANWGANIGLAFGWITDGGLGSLALDASLALAQDDGKAKIIS 596 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 P + ++ A G + + T + L TPTV + + + ++ Sbjct: 597 APKVMTVNNGPAEVARGTVRYFPIRTLDT--IDYKEIPALLSLTVTPTVSADDQ-HVTMK 653 Query: 334 TEVSEP---------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 EV++ P +K + + + +G T+V+ G+ + G Sbjct: 654 VEVTDNRELPASTEQTEEGTTDSPPGRTEKKITSNLIVKTGDTVVIGGIYQKSEISSDSG 713 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 IP L IP+LG LF+ R +TE+ I TP +VK V Sbjct: 714 IPWLKDIPLLGYLFKAERTQESKTELLIFLTPTVVKSV 751 >gi|300697020|ref|YP_003747681.1| type II secretory pathway, gspD-related protein [Ralstonia solanacearum CFBP2957] gi|299073744|emb|CBJ53265.1| putative type II secretory pathway, gspD-related protein [Ralstonia solanacearum CFBP2957] Length = 761 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 70/418 (16%), Positives = 135/418 (32%), Gaps = 55/418 (13%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P + A + + + + I+ L+K + + V + D Sbjct: 184 PINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDLILST 240 Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + + T+ ++ + ++ L + L+ + Sbjct: 241 TQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNAEAKQTGAMLKTMLKIR 295 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 ++ ++ VV+ + + A L E + N L Sbjct: 296 EPYIDERANMVVIR---ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSSNKLT----- 347 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+G Q+ + + + S + A + Sbjct: 348 -----------------QLGIQYPNSFTLTPLSATGATSLTLSDFKGLNS----DRIGVS 386 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311 + VL+ LA P + A + + A G + T +S++ + SV D Sbjct: 387 TPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 446 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368 G+ L P++ + ++I EVS + + R A+T ++L G T Sbjct: 447 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHDGETQ 506 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP + Sbjct: 507 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPE 564 >gi|28198648|ref|NP_778962.1| general secretory pathway protein D precursor [Xylella fastidiosa Temecula1] gi|182681332|ref|YP_001829492.1| general secretion pathway protein D [Xylella fastidiosa M23] gi|28056739|gb|AAO28611.1| general secretory pathway protein D precursor [Xylella fastidiosa Temecula1] gi|182631442|gb|ACB92218.1| general secretion pathway protein D [Xylella fastidiosa M23] Length = 775 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 111/291 (38%), Gaps = 41/291 (14%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235 V+ L++ QV ++ +AEV G S +G S G Sbjct: 474 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 532 Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S K + + +++AL++ T +R L P++ + Sbjct: 533 AGLPSAAARSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 592 Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A+ G + + S +TG +SV D GV+L P V G + L I EVS Sbjct: 593 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 652 Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 P + +A R+ T + SG TI+LAGL+ + + G+ Sbjct: 653 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 712 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 P LSK+PI+G LF N EI + TP +V+ ++ D YS Sbjct: 713 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 761 >gi|212702669|ref|ZP_03310797.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098] gi|212673941|gb|EEB34424.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098] Length = 651 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 69/378 (18%), Positives = 124/378 (32%), Gaps = 47/378 (12%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA--DSNIRVEMVSDTVVLHG-----MVR 152 D K + +A + + S + V+ + L G M Sbjct: 185 YAWAEDMKVNSMDSTVTIPGVASILQAMANGTPLTGSQVTVQPSAQG-GLRGKGLIAMNA 243 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GED 194 + SQ A S+ QSG + + +N + + + Sbjct: 244 STDTSQAAPAASQGGKDQSGTPSGPSIIADPRVNAVVVTDAEYRMSYYAKVIADLDKPVE 303 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAADFGGKFVSEGGD 244 V + I ++ D + G S TG+ + G S S G + G Sbjct: 304 LVEIHAAIVDIDSDFSRDFGVNWSGTGAYGKHWTGGGSAGGTSTSGIFPSAGASSAGGLS 363 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 +S F + ALE R L +P++ + AS + + S + Sbjct: 364 YSTLYSHGSDYFLARVTALEEDGQARVLGKPSVLTMDNVQASLENTSSYYVPV--SGNES 421 Query: 305 TSVTTHDYGVVLHFTPTVLSP-----GRIGLRIQTEVSEPVIG----VNAGDMPSYRVRK 355 + + D G VL TP ++ I L + + V+ ++ + K Sbjct: 422 SDLFKIDSGTVLKVTPHIIPGLPGQADSIKLMVSVQDDRDDGSNLFSVDPNNLSPIKQTK 481 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +T + G ++++ G + + GIP L IPILG LF + + E I T Sbjct: 482 INTQAIVGEGQSLLIGGHYYEIQSDAETGIPGLKNIPILGGLFGATGKKHQRMERLILIT 541 Query: 416 PFLVKPVAMRDLSRPDDH 433 P +V+ ++ D Sbjct: 542 PRIVRMDTASNVPTRVDD 559 >gi|300690947|ref|YP_003751942.1| type II secretory pathway, gspd-related protein [Ralstonia solanacearum PSI07] gi|299078007|emb|CBJ50649.1| putative type II secretory pathway, gspd-related protein [Ralstonia solanacearum PSI07] Length = 759 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 75/418 (17%), Positives = 143/418 (34%), Gaps = 55/418 (13%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P + A + + + + I+ L+K + + V + D Sbjct: 184 PINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDLILST 240 Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + + T+ ++ + ++ L D L+ + Sbjct: 241 TQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNADAKQTGAMLKAMLKIR 295 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 + ++ ++ VV+ +S V L+E + RN +V+ + + Sbjct: 296 DPYIDERTNMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS----- 343 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 L Q+G Q+ + + + S + A + Sbjct: 344 -------------TKLTQLGVQYPNSFTLTPLSATGATSLTLSDFKGLNS----DRIGVS 386 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311 + VL+ LA P + A + + A G + T +S++ + SV D Sbjct: 387 TPNVVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 446 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368 G+ L P++ + ++I EVS + + R A+T ++L G T Sbjct: 447 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRTANTVLKLHDGETQ 506 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP D Sbjct: 507 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPD 564 >gi|71905856|ref|YP_283443.1| type II and III secretion system secretin [Dechloromonas aromatica RCB] gi|71845477|gb|AAZ44973.1| type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal [Dechloromonas aromatica RCB] Length = 715 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 95/256 (37%), Gaps = 27/256 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKF---- 238 G QV ++ + E + + +G + GS + + G Sbjct: 453 TGARQVLIEARVVEAQDSFNRALGGKFGFLNKQAVQPAGSGINVAGGSSTTAGQSTSTPM 512 Query: 239 -------VSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 S GG ++ FS L ALE + ++ P + + A Sbjct: 513 VGVNLPSPSTGGSLALSLFTASFSRILNLELAALESDGLGKIVSSPRVITANNVKAKIED 572 Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----V 343 G + Y T SS G T +V+ + L TP + G + + + + E + Sbjct: 573 GTEIPYVTTQSSGGTTTATVSFKPAKLSLEVTPQITPEGTVRMNLVVKKEEADWTKAVVL 632 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 N P + +T V + +GGT+V+ G+ D Q E +PLL IP G LF+ Sbjct: 633 NGYANPPIKSSVVETNVVVENGGTVVIGGVFITDTQNSVEKVPLLGDIPFFGWLFKYKND 692 Query: 404 NREETEIFIAATPFLV 419 + E+ + TP ++ Sbjct: 693 IGKRRELLVFITPRVI 708 >gi|254496546|ref|ZP_05109416.1| type II protein secretion LspD [Legionella drancourtii LLAP12] gi|254354245|gb|EET12910.1| type II protein secretion LspD [Legionella drancourtii LLAP12] Length = 482 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 58/368 (15%), Positives = 128/368 (34%), Gaps = 28/368 (7%) Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149 G +G + ++ + T + S S G Sbjct: 95 VGTTMGTITRPALDSTNPASNLVNSSSNSQNTNSSSTTASPLNSSGATANTSSANTQNEG 154 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + S + + T K+V+ L+I Q+ ++ +AE+ ++ Sbjct: 155 ---STKPSVQIIGEPNTNSIILNAPASVIRVLKRVIAQLDIK-PAQLLIEALVAEINQED 210 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 +G + + S G + F+ ++AL RA Sbjct: 211 ANDLGIEWGSDQQTGKASGFR-----------NGFAIINSQTKGADFQAQIYALARAHKA 259 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVS----------SSTGATSVTTHDYGVVLHFT 319 L+ P++ + + A G Q + + SS+ T+ + + L+ Sbjct: 260 NILSTPSVVVLDNRQAKILVGKQVSVASSNYPNNANGTAASSSPYTTFDRVNVALHLYVR 319 Query: 320 PTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I ++I +P + P++R+ T+V + SG +VL GL +D Sbjct: 320 PQITRGNGIQMQIDQGNDTLDPPVAAETSTTPTFRISSIVTSVHVESGNVVVLGGLTQDS 379 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +P+L IP +G LF+ + R++ + + P +++ +++ D Y+ Sbjct: 380 LSNDNNRLPILGDIPGIGRLFKRNVNTRDKRVLMVFIKPIILRN-ERENMNLTHDKYNHT 438 Query: 438 DDAKAFFF 445 + + Sbjct: 439 RQYELDWL 446 >gi|83746420|ref|ZP_00943472.1| GspE-related protein [Ralstonia solanacearum UW551] gi|83726961|gb|EAP74087.1| GspE-related protein [Ralstonia solanacearum UW551] Length = 744 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 66/460 (14%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV--- 79 AK P + A + + + + I+ L+K + + V + D Sbjct: 163 AAKQPINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDL 219 Query: 80 ---------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 + + T+ ++ + ++ L + L+ Sbjct: 220 ILSTTQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNAEAKQTGAMLKTM 274 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + ++ ++ VV+ +S V L+E + RN +V+ + + Sbjct: 275 LKIREPYIDERANMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS- 326 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 L Q+G Q+ + + + S + A Sbjct: 327 -----------------TKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNS----DR 365 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSV 307 + + VL+ LA P + A + + A G + T +S++ + SV Sbjct: 366 IGVSTPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESV 425 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPS 364 D G+ L P++ + ++I EVS + + R A+T ++L Sbjct: 426 QYIDVGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHD 485 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP Sbjct: 486 GETQLLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP--- 542 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 + E + F+ + + + Sbjct: 543 --------SHRPETNFMEFWSGTETNARARRTLPDGQAPA 574 >gi|218887514|ref|YP_002436835.1| type III secretion outer membrane pore, YscC/HrcC family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758468|gb|ACL09367.1| type III secretion outer membrane pore, YscC/HrcC family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 666 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 97/287 (33%), Gaps = 25/287 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAAD--------FGGKFVSEGGD 244 V + I ++ D + +G + T G F+ GK + G Sbjct: 319 VEIHAAIVDIDSDYKRDLGVTYQGTAGSGQRWAGGGDFSTGTDAFPTLPSPGKPLGNGLT 378 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 S + F + ALE+ R L P++ + A+ + + A Sbjct: 379 LSTIYTMGSDYFLAQVTALEKNGEARMLGRPSVLTVDNVQATLENTSTYYI--EVQGYQA 436 Query: 305 TSVTTHDYGVVLHFTPT--VLSPGRIGLRIQTEVSEPVI-------GVNAGDMPSYRVRK 355 + + G VL TP G +++ V + N+ +P + K Sbjct: 437 VDLFKVEAGTVLRVTPHIIRNEDGGQSIKLVVSVQDDQNDNSSATSTSNSTAIPPVKQTK 496 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +T + G ++++ G + GIP+L IP+LG LF+ + + E I T Sbjct: 497 INTQAIVGGGQSLLIGGYYYEQKSTTDTGIPILMDIPVLGHLFKTNSKTSKRMERLILIT 556 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 P +V+ + +L + ++ N+ G Sbjct: 557 PKVVR---LNELPATPERVDDPSFHRSATQGDYNEKVPAPAPRRSGG 600 >gi|74316567|ref|YP_314307.1| putative Type II secretory pathway component PulD [Thiobacillus denitrificans ATCC 25259] gi|74056062|gb|AAZ96502.1| putative Type II secretory pathway component PulD [Thiobacillus denitrificans ATCC 25259] Length = 581 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 24/271 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + ++ ++ + + + QV ++ TI EV + G S + Sbjct: 287 GTAKQQALVQQYLDRVMQSAQRQVLIEATIVEVTLKDQYRAGIDWSKALEGTTGWTINTL 346 Query: 233 DFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G ++ ++ F + LE + L+ P L A++ Q+A Sbjct: 347 SGGSNALANTLTPFIQATYTNAGSNGFTAAIDLLESFGKAKVLSSPKLMALNNQTALLKV 406 Query: 290 GGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 +Y V + T AT + T G+V+ TP + G + L ++ +S Sbjct: 407 VDNLVYFNVKADTTATANVGTTTTFTTTPQTVPVGIVMTMTPQINENGMVSLTVRPTISR 466 Query: 339 PVIGVNA----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 V V +P +VR+ ++ +++ SG T++L GL++DD ++GIP L Sbjct: 467 NVGFVRDPNPSIPVAIPNQVPVIQVREMESLLQVRSGQTVILGGLIQDDSNNARDGIPGL 526 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 S+ +GA+F +TE+ I P +V Sbjct: 527 SRPEGIGAVFGQHEQINSQTELVIFLRPIVV 557 >gi|115524675|ref|YP_781586.1| general secretion pathway protein D [Rhodopseudomonas palustris BisA53] gi|115518622|gb|ABJ06606.1| general secretion pathway protein D [Rhodopseudomonas palustris BisA53] Length = 789 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 9/266 (3%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R + + ++ + ++ QV ++VTIAE+ Q G Q Sbjct: 496 RVTPDVTNNVLFVETTPQTYAVVERAIREMD-RFPTQVNIEVTIAEITLTSELQYGVQFF 554 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + A+ + G + +LD + VL AL + T+++ L+ P+L Sbjct: 555 LKSGNFSAGLGGASGIPLRTSYPGLNLVSGALLDP---QVVLDALAQFTSVKVLSSPSLV 611 Query: 279 AISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + Q A G Q + S+ ++V D G++L+ P V + G + L ++ Sbjct: 612 VLDRQPAVLQVGDQIPILTRQLTSAESTATVSNVDLKDTGIILNVLPRVNANGLVTLNVE 671 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 ++S V P+ R+ + + + SG T++LAGL+ D + G+P++S+I + Sbjct: 672 QQISNVVSTQPDTLTPTISQRRVKSVISVSSGQTVLLAGLITDGQNINRNGLPVVSQIKV 731 Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419 L L + TE+ I P ++ Sbjct: 732 LSDLLSSHDRTASRTELIIFIRPKII 757 >gi|182413440|ref|YP_001818506.1| type II and III secretion system protein [Opitutus terrae PB90-1] gi|177840654|gb|ACB74906.1| type II and III secretion system protein [Opitutus terrae PB90-1] Length = 673 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 69/371 (18%), Positives = 124/371 (33%), Gaps = 46/371 (12%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI--------- 154 + + L + L + ++ N + + T G VR Sbjct: 276 AEPNTRNEVIYLKHASAKDVAPLLSQLVSGQNTAAQKAAGT---SGSVRAPVPQPNQPNQ 332 Query: 155 -QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------DQ 195 AV L+ + + + Y + N + ++G Q Sbjct: 333 AATPDAAVALAGATVDTNEFSSYITILPDERSNSIVVSGTVDDIRLIRDLVEKVDILLAQ 392 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V ++V IAEV D + G ++ S G +GV++ + Sbjct: 393 VRIEVIIAEVTLDDSNKTGLSALNLTVATPQGSSQGTHITNFAGKVAGWDISQGVVNPLA 452 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------------- 302 F+ L + ++ L+ PT+ + A G T +T Sbjct: 453 FQAALGDAGTRSNVKILSAPTIVTTHNKEAQILVGESLPIITGIYTTAVGSTTPTEPGFA 512 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTV 360 VT D + L TP + G I L+I +V + I +N D P R+A + + Sbjct: 513 QNQQVTYKDIAIDLKVTPLIGDDGSIQLKIDQKVDDVVRTISINNSDQPVIGRRQATSFI 572 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G +VL GL + + + + L +IPIL LF + TE+ + P ++ Sbjct: 573 NVSDGQIVVLGGLQRTANTRGRNKLGFLVEIPILSHLFGARTNSVRRTELLLFIRPHVIA 632 Query: 421 PVAMRDLSRPD 431 P A + Sbjct: 633 PDAGTADATNT 643 >gi|254186538|ref|ZP_04893055.1| general secretion pathway protein D [Burkholderia pseudomallei Pasteur 52237] gi|157934223|gb|EDO89893.1| general secretion pathway protein D [Burkholderia pseudomallei Pasteur 52237] Length = 316 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 14/222 (6%) Query: 212 QIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 Q G +SI ++G + G G + + + +L ++ Sbjct: 4 QTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDA 63 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPT 321 L+ P L + + A G T S S + T D G+ LH P Sbjct: 64 NVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQ 123 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + G + L++ TE S V G N P++ R +TV +G IVL GL++D+ Sbjct: 124 ITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDN 183 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 184 YQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 225 >gi|312897631|ref|ZP_07757048.1| bacterial type II/III secretion system short domain protein [Megasphaera micronuciformis F0359] gi|310621264|gb|EFQ04807.1| bacterial type II/III secretion system short domain protein [Megasphaera micronuciformis F0359] Length = 372 Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats. Identities = 69/393 (17%), Positives = 138/393 (35%), Gaps = 68/393 (17%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV------VHSPR 85 A+ + +G+ ++I +++ + + V + +V + V+ + Sbjct: 31 AHDVPLRTILEGLGRSAGMNILIDESVKGNITVYLHNVS-AQEALQSVIHEAGLCLEEKN 89 Query: 86 TMYLF-GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 + L G+ GQ K + L A + ++ S+ Sbjct: 90 GIILIEGEGEGQ----------KTVSEAFPLSYMKAADAAEVAGVALHQGSVMAVGGSNA 139 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 +V+ G + +++ V+ + QV ++ I Sbjct: 140 IVMTGRHSDVTAAKQLVQAVD-------------------------RAPQQVDVEAEILS 174 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + ++ +K++G S + G K E LHA Sbjct: 175 LNKEAVKELGIDWSWSEGGGGVGKPRL----------------------PYIEARLHAFV 212 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTV 322 LA+P + A +G A G + T + G + G++L +TP + Sbjct: 213 SDGKASILAKPHIMATNGTEARIFIGDRIPVVTERVTGGERYATTEYKEAGILLQYTPYI 272 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + G + I EV PV V R+ DT V + +G IV+ GL+ + + Sbjct: 273 HTDGTVTANIHGEVGMPVY-VRDLRAYRVATRQVDTQVHIKAGERIVIGGLIGKEETENL 331 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +P+L +P++G LFR+ +++ETE+ I Sbjct: 332 RKVPILGDLPLIGKLFRSRYRSKKETEVIILIK 364 >gi|283852780|ref|ZP_06370044.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] gi|283571861|gb|EFC19857.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] Length = 634 Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 6/216 (2%) Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G S G + + + G + G + G + E L AL I+ L Sbjct: 401 FGGGTSGQGFAINNPANLTSAATGLGAAGTGLNFLFGKIGENVLEAQLTALAEENKIKIL 460 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + PT+T + SA +G Y + S + T+V + L P V+ + ++I Sbjct: 461 SSPTITTMENLSAFVENGKDIPYVSTSQNG--TNVQFAHATLKLEMLPHVVDGSNLRMKI 518 Query: 333 QTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + + P R+ + + + G TIV++GL +D + G+P L Sbjct: 519 VVKDDQVDPNQGNWVQGNPPIYKRETQSNLVVEDGDTIVISGLTRDTVTDANSGVPFLRD 578 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV--KPVAM 424 IP LG F+ + E+ I TP ++ KPVA Sbjct: 579 IPGLGWAFKAKSSDIHREEMLIFITPVILQEKPVAP 614 >gi|120609177|ref|YP_968855.1| YscC/HrcC family type III secretion outer membrane protein [Acidovorax citrulli AAC00-1] gi|58700619|gb|AAW81010.1| HrcC [Acidovorax citrulli] gi|120587641|gb|ABM31081.1| type III secretion outer membrane pore, YscC/HrcC family [Acidovorax citrulli AAC00-1] Length = 683 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 56/294 (19%), Positives = 109/294 (37%), Gaps = 16/294 (5%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN--IAGEDQ----VTLKVTIAEV 205 T + +A E F + G N M+ I DQ V L+ TI EV Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEV 457 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 D + +G S+ +S S + S S + ++ALE Sbjct: 458 NSDSVDALGVNWSLRAGTSSISTNL------PGPSTPAALSTIVLDAGRHLLANVNALEA 511 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS- 324 R L++P++ ++ ++A + + + ++ + G +L TP V Sbjct: 512 QGKARILSKPSVLGVANRAAVM--REKRVATVRVAGNLEANLFQIEAGTLLQMTPQVTPV 569 Query: 325 PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G+ +++ + + N +P + + T + G ++++ G+ + Sbjct: 570 DGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQDN 629 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +P LSK+P++G +FRN+ TE TP ++ A +S Sbjct: 630 AVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVIAQDAPTTVSSISPEVRKP 683 >gi|90417988|ref|ZP_01225900.1| putative general secretion pathway (GSP) protein D [Aurantimonas manganoxydans SI85-9A1] gi|90337660|gb|EAS51311.1| putative general secretion pathway (GSP) protein D [Aurantimonas manganoxydans SI85-9A1] Length = 700 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 122/285 (42%), Gaps = 14/285 (4%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGED-QVTLKVTIAEVR 206 G + D ++ + + S + KV+ L +I QV + VT+AEVR Sbjct: 392 GASGGMLDGATSLRIEPDLSNNSLVIYGDRAVRGKVLQALAHIDVPQMQVAVNVTMAEVR 451 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----FSVKGVLDRFSFETVLHA 262 + + G Q+ I G + + + +++G V S + VL+A Sbjct: 452 LNDQLRYGVQYFIKSGDIGLGRDKGSVGLFRTIADGIAREVPGFNFVVGSESSPDIVLNA 511 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVV 315 L+ T +R L+ P+L + + A F G Q T + ++ V D G++ Sbjct: 512 LDAVTDVRVLSSPSLVVMENEVAKFRVGDQIPIVTRTVNSVEDANAPISNEVEYRDTGII 571 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 ++ P + G + + I+ E+S + P R +T+ + G T++L GL+ Sbjct: 572 MNVRPRIAENGVVTMVIEQEISSVTANAGSLT-PVISNRSVASTISVVDGQTVLLGGLIS 630 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++GIP L+++ ++G LF + TE+ I P +++ Sbjct: 631 EQSDVGRDGIPGLNRLKVVGNLFGSKSRADVRTELLILIRPSVIR 675 >gi|319955805|ref|YP_004167068.1| general secretion pathway protein d [Nitratifractor salsuginis DSM 16511] gi|319418209|gb|ADV45319.1| general secretion pathway protein D [Nitratifractor salsuginis DSM 16511] Length = 664 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 110/288 (38%), Gaps = 22/288 (7%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 V E + +V++ +++ QV +K + E+ + I Sbjct: 300 APQKAMVVADVERNALIVLATGEQYQNIMQVIHRIDVEKP-QVFIKARVVEINSKKARAI 358 Query: 214 GFQHSITGSSSGPSK--SFAADFGGKFV------------SEGGDFSVKGVLDRFSFETV 259 G ++ ITG S + GG+ V S+ FS+ V F+ Sbjct: 359 GAKYGITGGWLTSHGLISVGGNMGGEAVNISQRLMSLVQQSDDNAFSLSDVKSLFALGIN 418 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYG 313 + L++ A L+EP++ + + G T S++ + D G Sbjct: 419 IDLLQQDGAAHVLSEPSILCTNNMESELFVGETRSILTSSTAGDNKNDLSRNNYEREDIG 478 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAG 372 + L P + S ++ L++ + + P+ R T + +G T++L G Sbjct: 479 LTLKVKPRLSSNNKVALKVDAIIEDVDDSSGYNSPTPTTTKRTITTNATVRNGQTVILGG 538 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L+K+ +P IPI+G LFR+ + + ++ I TP++V+ Sbjct: 539 LIKNLTGAAHNKVPFFGDIPIIGRLFRDEGTAQRKVDLVIYLTPYVVR 586 >gi|9626242|ref|NP_040579.1| G IV protein [Enterobacteria phage Ike] gi|138049|sp|P03667|G4P_BPIKE RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|14956|emb|CAA26076.1| unnamed protein product [Enterobacteria phage Ike] Length = 437 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 94/238 (39%), Gaps = 11/238 (4%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 DQV ++ + E + F + G + GG F G+ Sbjct: 204 ARDQVLIQSLMFETSLVNGVDLSFAAGSASGDKVAGGFNTSALGTALSTAGGSF---GIF 260 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGA 304 + + A++ + + ++ P + SGQ+ + G + T + Sbjct: 261 NGNVLALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTGEAANVNNPF 320 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 ++ D GV L TP V+ G++ L I T+ + A D+ R TTV++ Sbjct: 321 QTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASDI-ITNQRHMQTTVQIKD 379 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G T++L GL+ + +P +P++G LFR+ + E +F+ T ++K + Sbjct: 380 GQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAHVIKAL 437 >gi|118594956|ref|ZP_01552303.1| general secretion pathway protein D [Methylophilales bacterium HTCC2181] gi|118440734|gb|EAV47361.1| general secretion pathway protein D [Methylophilales bacterium HTCC2181] Length = 1061 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 59/292 (20%), Positives = 110/292 (37%), Gaps = 30/292 (10%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L G V + + + +Q A K ++ L Q+ ++ + E+ Sbjct: 495 LAGQVSSQL-----------LVIYNPNDQKALLRVNKAISELIDRPAKQILIEGIVLEIA 543 Query: 207 RDILKQIGFQHSITGSSS-----GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 L ++G S T ++ G + G + + G SF L Sbjct: 544 SSELSKLGVNWSTTRTNGSIISLGTLAEITSVAAGSAAASVAYTTAGGTGAGPSFAANLE 603 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHF 318 AL T + L++P+L + + AS G ++ S T G++L+ Sbjct: 604 ALITKTKSQVLSKPSLMTLDNRQASIKVGTNIPIAASVTTAVGASTAGFTYLPVGIMLNI 663 Query: 319 TPTVLSPGR-IGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGT 367 P + + I + I +S+ GV P+ +RK T + + Sbjct: 664 RPRISDDNQEISMLIDATISQKVDDEDVIIYNSTGVAMASAPTTTLRKIQTYARVNNESP 723 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++AGL+ G+P+LS IP+LG LF + +TE+ + TP ++ Sbjct: 724 LIIAGLVSKQKTMTTTGVPVLSSIPLLGGLFSFESPSNVDTEVVLIITPTII 775 >gi|74317318|ref|YP_315058.1| type II secretion system protein D [Thiobacillus denitrificans ATCC 25259] gi|74056813|gb|AAZ97253.1| type II secretion system protein D [Thiobacillus denitrificans ATCC 25259] Length = 667 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 71/437 (16%), Positives = 142/437 (32%), Gaps = 60/437 (13%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P E A + I + I+ +K + + V + V + Sbjct: 182 PITLEFRNADLKAIFEVISRSAGINFIFDKDVRQDL---VASIFVRNTRIESAIDFLLMS 238 Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 V + T+ ++ + L D ++ + Sbjct: 239 NQLAKKVLNENTVLVYPNIPAKT-----RDYQDLRAKTFYLASMDAKQALNIVKTIVKTR 293 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 ++ ++ +T+V+ A+ L+E L + +V+ + Sbjct: 294 DVVIDEKLNTLVMRDTP-------DAIRLAEKLLGSQDLAESEVLLEVEVLEVS------ 340 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 R L IG + S A + G++ Sbjct: 341 ------------RSRLSDIGITPPTEATFRTLGPSGAPSTTLADLKGLNS----GLIGVS 384 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVT 308 S + A LA P + + + A G + T + ++ +V Sbjct: 385 SLSASVRARMDNGDTNLLANPRIRVKNREKAKVHIGERVPIITTTVTSAGTTSFLPETVN 444 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSG 365 D G+ P + + +++ EVS + + ++ R A TT+ L G Sbjct: 445 YLDVGIKFEVEPLISLNDEVTIKVALEVSSLGQKSVTKSGSEVYRVGTRNASTTLALRDG 504 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T LAGL+ D+ ++ GIP +IP +G LF + + ++TEI + TP +V+ + Sbjct: 505 ETQALAGLISDEERETVNGIPGFGRIPAIGRLFASKSNSTDKTEIVLLITPHIVRNLDRT 564 Query: 426 DLSRPDDHYSVEDDAKA 442 L+ D ++ D+ A Sbjct: 565 ALTASD--FAAGTDSAA 579 >gi|251772573|gb|EES53138.1| putative general secretion pathway protein D [Leptospirillum ferrodiazotrophum] Length = 565 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 8/195 (4%) Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G G ++ + +L+ALE + +RTL+ P + A G A T G Sbjct: 314 NGLVAGVLTGGTFKYNGVNYPNIGELLNALETYSDVRTLSTPEILATDGVKAKITIGEDV 373 Query: 294 LYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM- 348 + T S T + + G+ L TP +LS R+ L ++ +S Sbjct: 374 PFITGQSQTVGGNVMTMIQRQNVGITLELTPHILSHNRVRLDVKQTISALTNASQVIGTI 433 Query: 349 ---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P+ R A T + + SG T+V+ GL+ + +GIP LS IPILG LF N+ + Sbjct: 434 AVGPTTTKRSAKTNLTISSGQTVVIGGLISKETSINDQGIPFLSDIPILGYLFSNTNNEK 493 Query: 406 EETEIFIAATPFLVK 420 + ++ I TP++++ Sbjct: 494 KRDDLLIFLTPYVIR 508 >gi|15596579|ref|NP_250073.1| type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|9947326|gb|AAG04771.1|AE004567_10 probable type II secretion system protein [Pseudomonas aeruginosa PAO1] Length = 759 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 23/291 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 +L G+ I S VE + ++ ++ QV ++VT+A V Sbjct: 442 LLGGLAAGISGSGTIVEDENRNAILFRGAARTWQQMQGLLREMDKPAR-QVLIEVTVASV 500 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 +++G + + S + S + + G + A+ Sbjct: 501 SLSDTQELGVEWEMLNGSFNSATSTGSKGSAGKGGFNYVINTAGGN-----TAAIQAMAD 555 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTGATSVTTHDYGVVL 316 +R LA P + SG+ A+ G T S+ + G +L Sbjct: 556 NQRVRVLATPRILVKSGEQANINVGRDIPIPTAQVNDDSTTAGSTNLRNEIAYRSTGTIL 615 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTI 368 + P V S R+ L + E+S+ G P +T++ L SGG++ Sbjct: 616 NVAPVVYSDSRVDLTVSQELSDSGGSSGGGGKASGGGISAPEISRTSLETSLTLKSGGSV 675 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++ GL++D+I G+PLL IP +G LF + + E+ + P+++ Sbjct: 676 LMGGLIRDNITDSNAGVPLLKDIPGIGFLFGRQKAVKTREEVIMLIQPYVL 726 >gi|284006883|emb|CBA72151.1| type III secretion component protein SctC [Arsenophonus nasoniae] Length = 598 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 117/335 (34%), Gaps = 32/335 (9%) Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 L + + + + ++ ++ D I+V ++ +L MV + SQ + Sbjct: 180 LPLAIQVFSLKYASAVDRIIK--YRDEQIQVPGLAT--ILANMVSAAEISQINDD---KI 232 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVT----------------LKV--TIAEVRRDI 209 +SQ A + +N + + + ++V +I +V D Sbjct: 233 ISQKPNGHKAMIQPEPSINAIIVRDLPERMPMYQRLIHSLDKPTARIEVALSIIDVNADN 292 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L ++G + G +G + S+ + L+ Sbjct: 293 LSELGIDWGV-GLKAGQHHQINIASTLTQAASPVLGSLLDKQGLNYLVAKVSLLQSQGIA 351 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG--- 326 + +++PTL A + K + + YG +L TP V+ G Sbjct: 352 QVVSKPTLLTQENTQAIIDHNETYYIKV--NGERVAELKGITYGTLLQMTPRVIQIGDKP 409 Query: 327 RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E ++ +P+ DT + G ++V+ G+ +D++ + + Sbjct: 410 EIHLVLHIEDGNQKPNSSGVDGIPTINRTIIDTVARVEQGQSLVIGGIFRDEVIKTSRKV 469 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 PLL IP+LGALFR+ P ++ Sbjct: 470 PLLGDIPLLGALFRSQSNQTRRVVRIFIVEPKIID 504 >gi|149197164|ref|ZP_01874216.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155] gi|149139710|gb|EDM28111.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155] Length = 738 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 17/242 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGD 244 QV ++VT EV + GF+++ T G G S + FG + G Sbjct: 470 QVMIQVTAVEVELGEGLEFGFEYAATDKFGSGDNESGVGVGSSTADTPSFGPPGGLDPGI 529 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSS 300 + + + A+ ++ L P + ++G+ A G + SS Sbjct: 530 SLLLQSAGVDNEFAFVQAVAGDSSSELLFTPHILTLNGEEAEINIGQNVPVRAGTTSTSS 589 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKAD 357 + + GV+L P V + + L + +S V D PS+ K Sbjct: 590 NNDFEQIEYRSTGVLLRVLPQVSADKYVTLDTEIVISSIVEQSPEEVLIDSPSFNENKVT 649 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + + + TI+L G+++ + G+P L IP +G LF+++ E E+ I Sbjct: 650 TKLLIKNNETILLGGIIQKVASESTSGVPFLKDIPGIGFLFQSATTGSREKELVIFIKAT 709 Query: 418 LV 419 ++ Sbjct: 710 VI 711 >gi|148652211|ref|YP_001279304.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1] gi|148571295|gb|ABQ93354.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1] Length = 642 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 103/296 (34%), Gaps = 43/296 (14%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + T + S+ ++ ++I QV ++V + + K++G + + Sbjct: 349 ARTNTLIIKDTADSLSNIHALIKQIDIPVR-QVMIEVRMVSATDNFSKEMGVKWGLLSKG 407 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVL-------------------------------- 251 + + +++ FS Sbjct: 408 VAHNDDLLVGASDQTLADLKSFSAPNTAYKGRNKSRAGYAITRPDNLNVDLGISNPAGRI 467 Query: 252 -------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + L A++ ++ P + + Q+A+ +SG + Y++ S G Sbjct: 468 AFGLLSMSDLMIDLELSAMQAEGRGEVISTPKILTLDKQTATVSSGTKIPYQSESEGGGT 527 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T + + L TP++ +I L++ E P + + T V + Sbjct: 528 T-TQFEEALLSLQVTPSITPEDKISLQLNIENGRPNPV--GNGVILIDTDRLITRVTVGD 584 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+VL G+ ++ I + +P +P +G LF+ ++ E+ I TP L++ Sbjct: 585 GQTLVLGGIYRNQIFNNTQKVPFFGDLPYIGRLFKQDLRRNDQQELLIFVTPKLMQ 640 >gi|58091874|gb|AAW65366.1| gene IV protein [synthetic construct] Length = 437 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 94/238 (39%), Gaps = 11/238 (4%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 DQV ++ + E + F + G + GG F G+ Sbjct: 204 ARDQVLIQSLMFETSLVNGVDLSFAAGSASGDKVAGGFNTSALGTALSTAGGSF---GIF 260 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGA 304 + + A++ + + ++ P + SGQ+ + G + T + Sbjct: 261 NGNVLALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTGEAANVNNPF 320 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 ++ D GV L TP V+ G++ L I T+ + A D+ R TTV++ Sbjct: 321 QTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASDI-ITNQRHMQTTVQIKD 379 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G T++L GL+ + +P +P++G LFR+ + E +F+ T ++K + Sbjct: 380 GQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAHVIKAL 437 >gi|253995615|ref|YP_003047679.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis JLW8] gi|253982294|gb|ACT47152.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis JLW8] Length = 610 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 70/368 (19%), Positives = 136/368 (36%), Gaps = 45/368 (12%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 ++ + L+ + A + +A + + ++ V T Sbjct: 211 TALLAESDKEIIIGRLEADKQSASADNQSAKAGSVALGDTQKTEANNVKVDAQKAFTEYK 270 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + A + + + N ++V ++ + + + QV ++ TI EVR Q Sbjct: 271 TLFAANVISNREAGVISVRGTNKQHERVQEFLDKVLASAKRQVLIEATIVEVRLSDSFQA 330 Query: 214 GFQHSITGSSSGPSK-----------SFAADFGGKFVSEGGDFSVKGVLDR--------- 253 G S +S+ S + G F + F V Sbjct: 331 GIDWSRLNNSASNSGFQFRQQLGAQTNGINATGNTFTTTANAFGVATNAGFVAGYLNPVS 390 Query: 254 --FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---- 307 + ++ LE+ + + L+ P L ++ Q+A +Y TV S SV Sbjct: 391 KIGNIAASINLLEQFGSTKVLSSPKLMVLNNQTAVLKVVDNLVYFTVQSQQSQGSVGGGI 450 Query: 308 --------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-------EPVIGVNAGD-MPSY 351 T GVV+ TP + + + I+ VS +P + +P Sbjct: 451 LSTVTTTPNTVPVGVVMSVTPQINDLSNVNINIRPTVSRVLGFKKDPNPNLTVESLVPEI 510 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 +VR+ ++ +++ SG T VL GL++DD+ + +P LSK+P +G +F +TE+ Sbjct: 511 QVREMESMLQILSGNTAVLGGLMQDDVLTNTDKVPGLSKVPGVGKVFTGQNDANRKTELV 570 Query: 412 IAATPFLV 419 I P ++ Sbjct: 571 IFLRPTVI 578 >gi|302877484|ref|YP_003846048.1| type II and III secretion system protein [Gallionella capsiferriformans ES-2] gi|302580273|gb|ADL54284.1| type II and III secretion system protein [Gallionella capsiferriformans ES-2] Length = 573 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 59/354 (16%), Positives = 107/354 (30%), Gaps = 63/354 (17%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL------NIAGEDQVT 197 ++L G + R +S + ++ N+ I+ E QV Sbjct: 222 RLILGGKDASDGKGARLPADRSLSVSPMSGVIVIRALPDEIRNVTAFLKASQISVERQVI 281 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------------------ 239 L+ I +V+ + Q G + S G + Sbjct: 282 LEAKIIDVQLNDSFQSGVNWGAFKNGLNSFSSVGVGGAGSVLNPATAGVGATDISSAALS 341 Query: 240 ----------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + G SF +L+ LE + L+ P ++ ++ Q A Sbjct: 342 ALPGASLLPNAAGTGSLFGLAFQTSSFALLLNFLESQGDVHVLSSPRISTLNNQKAVLKV 401 Query: 290 GGQHLYKTVSSSTGATSV-----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 G + T S +V G+VL TP + I L + +S Sbjct: 402 GTDEFFVTEISGGSQATVNVAGTAPTIKTQPFFSGIVLDVTPKIDENNEIILHVHPSISS 461 Query: 339 PVI---------GVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 +P S + + D+ V G + + GL++ D + G+P Sbjct: 462 VTTVNKVLNLGATTGTYTLPMASSSISETDSIVRARDGQIVAIGGLMRQDSTNGESGLPG 521 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDD 439 LSK ++F + + E+ I P +V D++R D Sbjct: 522 LSK-----SIFGQTSKVSSKRELVILLKPTVVDSDRDWSDDIARSRDRVENLSR 570 >gi|58580480|ref|YP_199496.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622438|ref|YP_449810.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58425074|gb|AAW74111.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366378|dbj|BAE67536.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 770 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 73/309 (23%), Positives = 116/309 (37%), Gaps = 37/309 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ET A SS + V+ L++ QV ++ +AEV Q G Sbjct: 448 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGKLQYGVNWYF 506 Query: 220 TGSSSGPSKSFAADF-----------------GGKFVSEGGDFSVKGVLDRFSFETVLHA 262 S + + S A G G+ + + +++HA Sbjct: 507 ENSVNAAADSAANSTGIGAGAGLASAAGRNIWGDIAGKITGEKGAQWTFLGKNAASIIHA 566 Query: 263 LERATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVVL 316 L+ T +R L P++ + A+ + + S + +SV D GV+L Sbjct: 567 LDEVTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVIL 626 Query: 317 HFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSG 365 P V G + L I EVS P A R+ T + SG Sbjct: 627 KVRPRVTKDGMVFLDIVQEVSSPGDRPAACTSATATVNAAACNVDINTRRVKTEAAVQSG 686 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 TI+LAGL+ D GIP LSK+P++GALF + N E+ + TP +V+ + Sbjct: 687 DTIMLAGLIDDTTSDGSNGIPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVR--NPQ 744 Query: 426 DLSRPDDHY 434 + D Y Sbjct: 745 EARNLTDEY 753 >gi|17548695|ref|NP_522035.1| putative general secretion pathway GSPD-related protein [Ralstonia solanacearum GMI1000] gi|17430943|emb|CAD17625.1| putative general secretion pathway gspd-related protein [Ralstonia solanacearum GMI1000] Length = 698 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 76/423 (17%), Positives = 147/423 (34%), Gaps = 55/423 (13%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-- 79 + +K P + A + + + + I+ L+K + + V + D Sbjct: 118 AASKQPINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALD 174 Query: 80 ----------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 + + T+ ++ + ++ L D L+ Sbjct: 175 LILSTTQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNADAKQTGAMLKA 229 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + + ++ ++ VV+ +S V L+E + RN +V+ + + Sbjct: 230 MLKIRDPYIDERTNMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS 282 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 L Q+G Q+ + + + S + A+ Sbjct: 283 ------------------TKLTQLGVQYPNSFTLTPLSATGASSLTLSDFKGLNS----D 320 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATS 306 + + VL+ LA P + A + + A G + T +S++ + S Sbjct: 321 RIGVSTPNVVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSES 380 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELP 363 V D G+ L P++ + ++I EVS + + R A+T ++L Sbjct: 381 VQYIDVGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRTANTVLKLH 440 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G T +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP Sbjct: 441 DGETQLLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSH 500 Query: 424 MRD 426 D Sbjct: 501 RPD 503 >gi|312171108|emb|CBX79367.1| Type III secretion system outer membrane pore HrcC [Erwinia amylovora ATCC BAA-2158] Length = 677 Score = 149 bits (377), Expect = 8e-34, Method: Composition-based stats. Identities = 70/452 (15%), Positives = 132/452 (29%), Gaps = 54/452 (11%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSD---PTKADVVVHSPRTMYLFGKNVGQANVI 100 G + + + + D + V+ + AD +H M + G A ++ Sbjct: 154 TGPPQYLELVKRFSEQREKKEDRRKVMTFPLRYASVADRTIHYRDQMVVI---PGVATML 210 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 N + +R + + + + +L + + S RA Sbjct: 211 ----------NELMNGKRSAPASASGIESTPGGPDTNSMIQNTQTLLSRLSSHNKTSNRA 260 Query: 161 V-----------ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVRR 207 +S + + + + + L+ Q V + I ++ R Sbjct: 261 GGRDNEIEDVSGRISADVRNNALLIRDDDKRHDEYSQLIAKIDVPQNLVEIDAVILDIDR 320 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L ++ T S + G FVS D F + ALE Sbjct: 321 TALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-----------DFKRFFADIQALEGEG 369 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-G 326 +A P++ + Q A + G L TP + G Sbjct: 370 TASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADIQPVTAGTSLQVTPRAVGNEG 427 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +++ ++ + + N + R T + +VL G ++ I Sbjct: 428 HSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALISENRALVLGGFHVEESADRDRRI 487 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 PLL IP LG LF + R + + TP L+ D+ DA Sbjct: 488 PLLGDIPWLGQLFSSKRHEISQRQRLFILTPRLIGDQTDPTRYVTADNRQQLSDA----M 543 Query: 446 NRVNKIYGP------KEASEVEGQNYKGAIGF 471 RV + + E + + + GF Sbjct: 544 GRVERRHSSVNQHDVVENALRDLAEGQSPAGF 575 >gi|88799604|ref|ZP_01115180.1| Type II secretory pathway, component PulD [Reinekea sp. MED297] gi|88777689|gb|EAR08888.1| Type II secretory pathway, component PulD [Reinekea sp. MED297] Length = 519 Score = 149 bits (377), Expect = 8e-34, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 97/251 (38%), Gaps = 26/251 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKFVSEGGDFSVKGV 250 QV ++ I EV D + G S + G + A D + G Sbjct: 251 KQVIIEAKIVEVTLDQEYRSGINWSFFNDNFGSGNNSAGIGLDGNAISGAGGVGGVFNLS 310 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---- 306 L +F ++L L+ ++ L+ P ++ I+ Q A G + T+ S T + Sbjct: 311 LSLDNFTSMLQLLDHQGDVQVLSSPRVSTINNQKAVIKVGTDEFFATIQSITTEVNDDDS 370 Query: 307 ----------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------ 350 + G+ L TP + + L ++ V+E V D+ Sbjct: 371 DSVTTVPAFELEQFFSGIALDVTPQIADDDSVTLHVRPTVTEVVEDTKTLDVGGRSYQLP 430 Query: 351 ---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +R++D+ + SG +V+ GLL+ G+P IP++ LF R ++++ Sbjct: 431 LAYSNIRESDSIIRAQSGQIVVIGGLLQQKQDLGTTGLPWFQTIPVIRGLFAQDRESQQK 490 Query: 408 TEIFIAATPFL 418 +E+ I P + Sbjct: 491 SELVILLKPTV 501 >gi|188578583|ref|YP_001915512.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523035|gb|ACD60980.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae PXO99A] Length = 766 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 73/309 (23%), Positives = 116/309 (37%), Gaps = 37/309 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ET A SS + V+ L++ QV ++ +AEV Q G Sbjct: 444 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGKLQYGVNWYF 502 Query: 220 TGSSSGPSKSFAADF-----------------GGKFVSEGGDFSVKGVLDRFSFETVLHA 262 S + + S A G G+ + + +++HA Sbjct: 503 ENSVNAAADSAANSTGIGAGAGLASAAGRNIWGDIAGKITGEKGAQWTFLGKNAASIIHA 562 Query: 263 LERATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVVL 316 L+ T +R L P++ + A+ + + S + +SV D GV+L Sbjct: 563 LDEVTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVIL 622 Query: 317 HFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSG 365 P V G + L I EVS P A R+ T + SG Sbjct: 623 KVRPRVTKDGMVFLDIVQEVSSPGDRPAACTSATATVNAAACNVDINTRRVKTEAAVQSG 682 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 TI+LAGL+ D GIP LSK+P++GALF + N E+ + TP +V+ + Sbjct: 683 DTIMLAGLIDDTTSDGSNGIPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVR--NPQ 740 Query: 426 DLSRPDDHY 434 + D Y Sbjct: 741 EARNLTDEY 749 >gi|90424504|ref|YP_532874.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB18] gi|90106518|gb|ABD88555.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB18] Length = 774 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 26/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVL 251 QV + TIAEV Q G Q +T G S +S D + + Sbjct: 489 QVAIDATIAEVTLTDDLQFGVQTYLTSRDFGMPADRGSLGTASSSALISAASDVVLNRAI 548 Query: 252 DRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---- 299 F+F + +L+AL T ++ L+ P+L I Q A+ G + +T S Sbjct: 549 PGFNFLVGSGSSPKAILNALHAITEVKVLSNPSLVVIDNQVATLQVGDEIPIQTGSATVL 608 Query: 300 --SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348 S+T A + G++L P + + G + L I+ E+S PV + Sbjct: 609 SSSNTIANTTDYRRTGILLQVVPRINANGNVRLEIEQEISNPVASSSTSSSSSTSTNSLT 668 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ RK ++V + SG T++LAGL+ D + + GIP L ++P +G +F + + T Sbjct: 669 PTVSTRKVKSSVAVASGQTVLLAGLISDTQNKTRSGIPGLDQLPGVGDVFSQTEKIMKRT 728 Query: 409 EIFIAATPFLVK 420 E+ I P +++ Sbjct: 729 ELIIFIRPQIIR 740 >gi|91762809|ref|ZP_01264774.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002] gi|91718611|gb|EAS85261.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002] Length = 518 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 94/291 (32%), Gaps = 38/291 (13%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + E + T + KV+ ++ + QV ++ I E + +G + Sbjct: 236 QVTEEATTRSIIVRGKEKDLDIVDKVIREIDKRTK-QVLIEAFIVEATSTFEQSLGKRLG 294 Query: 219 I--------TGSSSGPSKSFAADFGGKFVS----------------------EGGDFSVK 248 G + G S AA G +S + Sbjct: 295 AAYTRKSLRMGGTQGGSSVGAASGTGAALSDSTGAFTSGAGTDNLVNFGSAAATSGIGIL 354 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + L LE +T++ P L + Q AS G Sbjct: 355 KKTGSAVLKLELDFLEAQGLSKTVSNPKLFTLDNQQASINQGETIYIDGGEGED-----K 409 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 D + L TP ++ G + L +V+ + +T + + G + Sbjct: 410 PVDASLKLIVTPNIIGDGNVML--SIQVNNDTPNRANAASVGVNKMEINTKLLVADGDIV 467 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V+ G+ K+++ ++G+P SK+PILG + + E+ + P ++ Sbjct: 468 VIGGIKKNNVANNRQGVPGTSKVPILGKVLSGKSNSDTMNELLVFIAPRIL 518 >gi|15606033|ref|NP_213410.1| hypothetical protein aq_585 [Aquifex aeolicus VF5] gi|2983222|gb|AAC06820.1| hypothetical protein aq_585 [Aquifex aeolicus VF5] Length = 705 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 98/238 (41%), Gaps = 14/238 (5%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + ++ + EV + +L+++G S A + G + Sbjct: 465 IKIRAKLVEVEKSLLRELGISWRTVFSKAYIPEFWQGETAFRTVTPGQPQSGLLTFTFQR 524 Query: 252 DRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +R + E L A E+ + +AE + ++G+ A +SG + VS S G +V Sbjct: 525 NRLNLLEFKLLAYEQEGRAKNVAESYVITVNGEPAVISSGLEFPVTEVSLSGGIANVEPK 584 Query: 311 D--YGVVLHFTPTVLSPGRIGLRIQT------EVSEPVIGVN-AGDMPSYRVRKADTTVE 361 +VL TP VL G I L + V E + +P + + D + Sbjct: 585 YESIPIVLITTPVVLPDGNILLSVYLARRQINSVQEFPVTQTLTQKIPVFSTSRIDVKIP 644 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+V+ G ++ + G+P L ++P+LG LF+ + E+ I TP ++ Sbjct: 645 IKNGETVVIGGAVEKSDSITESGVPKLREVPLLGWLFKTQTKQLRDRELLIFITPEII 702 >gi|171060101|ref|YP_001792450.1| general secretion pathway protein D [Leptothrix cholodnii SP-6] gi|170777546|gb|ACB35685.1| general secretion pathway protein D [Leptothrix cholodnii SP-6] Length = 753 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 31/281 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------TGSSS 224 V++ L+ QV ++ I ++ + GFQ TG ++ Sbjct: 398 GVIDQLDAR-RAQVYVESMIVKMDATQAAEFGFQWQGLLGQSGDRYGLVAGTNFGTGGNN 456 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQ 283 + S A G G + + ++ ++ + LE T L+ P L A+ + Sbjct: 457 IVNLSVGAATGAALPGAGLNVGLLKAINGVYTLGALARFLESNTGANVLSTPNLIALDNE 516 Query: 284 SASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 A G + T S + T ++ D G+ L P + G + + I Sbjct: 517 EAKIVIGQNVPFVTGSFTNTGTSNGSANPFQTIERKDVGLTLRVKPQIGEGGTVRMVIYQ 576 Query: 335 EVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 E S V P+ +TTV + G +VL GLLKDD ++ +P L+ IP+ Sbjct: 577 ENSSVVANTTTNSAGPTTDKSAIETTVVVDDGSIMVLGGLLKDDYGSGEDRVPGLASIPL 636 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +G LFR+ R ++ + + P +++ + D Y Sbjct: 637 IGGLFRSENRKRTKSNLLVFLRPVVMR-SQQDANALTLDRY 676 >gi|193062144|ref|ZP_03043240.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli E22] gi|194426396|ref|ZP_03058951.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli B171] gi|260845704|ref|YP_003223482.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009] gi|260858255|ref|YP_003232146.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368] gi|13447709|gb|AAK26708.1|AF200363_16 EscC [Escherichia coli] gi|18034513|gb|AAL57535.1|AF453441_19 EscC [Escherichia coli] gi|17384643|emb|CAC81855.1| EscC protein [Escherichia coli] gi|57434464|emb|CAI43881.1| EscC protein [Escherichia coli] gi|192932364|gb|EDV84962.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli E22] gi|194415704|gb|EDX31971.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli B171] gi|195183205|dbj|BAG66750.1| T3SS structure protein EscC [Escherichia coli O111:H-] gi|254692333|emb|CAR47974.1| EscC protein [Escherichia coli] gi|254692401|emb|CAR48044.1| EscC protein [Escherichia coli] gi|257756904|dbj|BAI28406.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368] gi|257760851|dbj|BAI32348.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009] gi|323163017|gb|EFZ48850.1| hypothetical protein ECE128010_0613 [Escherichia coli E128010] Length = 512 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 99/247 (40%), Gaps = 23/247 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + V+I +V + L+Q+G S T ++ S +F + + + S + + Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSS------TAQANLSSSVISNA 327 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F ++AL++ + + L++P++ ++ A K S S+ + G Sbjct: 328 NNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385 Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358 +L TP +L L ++ + +P + + T Sbjct: 386 TLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSILPEVQNSEMTT 445 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G +++L G ++D K+GIPLLS IP++G LF ++ + Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKHSVVRLFLIKATP 505 Query: 419 VKPVAMR 425 +K + Sbjct: 506 IKSASSE 512 >gi|83647801|ref|YP_436236.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC 2396] gi|83635844|gb|ABC31811.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC 2396] Length = 615 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 96/291 (32%), Gaps = 26/291 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 +QV + V+I V LK++G G D ++ + G Sbjct: 285 SEQVEVNVSIISVSATNLKELGVSWQARDQKLGEFGYGGIDKQNPAPNKNQLAILGGADA 344 Query: 253 RFS---------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 FS F ++AL + ++ P++ A + Sbjct: 345 TFSTVLDSGLDYFIAKVNALVEDGDAQVVSRPSVVTSEHLEAVLDDSTTFHVRV--QGNE 402 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + G VL TP + I L + E G +P + +T Sbjct: 403 QVDLFPVTVGSVLRVTPHIQRGEEQKGINLEVTIE-DGQQTGEEVDRIPVIKTSSINTQT 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++ G +D + G+PLL IP+LGALFR + NR++ TP ++ Sbjct: 462 VVGLGQSLLIGGFFQDYESESVGGVPLLKDIPLLGALFRTTNHNRKKMVKLFLMTPKIID 521 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471 P + + ++ + V + Y + GF Sbjct: 522 --------VPTGGLA---SNGRKIYGYAFQVGSSNKDGAVAIREYFDSRGF 561 >gi|71082769|ref|YP_265488.1| type II secretion PilQ [Candidatus Pelagibacter ubique HTCC1062] gi|71061882|gb|AAZ20885.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1062] Length = 518 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 94/291 (32%), Gaps = 38/291 (13%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + E + T + KV+ ++ + QV ++ I E + +G + Sbjct: 236 QVTEEATTRSIIVRGKEKDLDIVDKVIREIDKRTK-QVLIEAFIVEATSTFEQSLGKRLG 294 Query: 219 I--------TGSSSGPSKSFAADFGGKFVS----------------------EGGDFSVK 248 G + G S AA G +S + Sbjct: 295 AAYTRKSLRMGGTQGGSSVGAASGSGAALSDSTGAFTSGAGTDNLVNFGSAAATSGIGIL 354 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + L LE +T++ P L + Q AS G Sbjct: 355 KKTGSAVLKLELDFLEAQGLSKTVSNPKLFTLDNQQASINQGETIYIDGGEGED-----K 409 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 D + L TP ++ G + L +V+ + +T + + G + Sbjct: 410 PVDASLKLIVTPNIIGDGNVML--SIQVNNDTPNRANAASVGVNKMEINTKLLVADGDIV 467 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V+ G+ K+++ ++G+P SK+PILG + + E+ + P ++ Sbjct: 468 VIGGIKKNNVANNRQGVPGTSKVPILGKVLSGKSNSDTMNELLVFIAPRIL 518 >gi|312958833|ref|ZP_07773352.1| type III secretion system rscC [Pseudomonas fluorescens WH6] gi|311286603|gb|EFQ65165.1| type III secretion system rscC [Pseudomonas fluorescens WH6] Length = 713 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 50/307 (16%), Positives = 92/307 (29%), Gaps = 23/307 (7%) Query: 139 EMVSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 V GM T + R + +++++ L++A + Sbjct: 272 TNAGTAPVDTGMAITPRAQVNTSRIRVEADVRNNAVLIYDVPERQAMYRELISQLDVARK 331 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 V + I ++ R L + G + S + A + + R Sbjct: 332 L-VEIDAIILDIERTQLHEFGIKWGFQNSRFRGGVNMAPGTSSQL----------SIEHR 380 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F + ALE ++ P++ + Q A + +T G Sbjct: 381 DRFYADVRALESRGLATMVSNPSVLTLENQPAVIDFNRTQYLTAGRENATILPIT---VG 437 Query: 314 VVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 P V+ +I L + E P R K T + ++V+ Sbjct: 438 TSFQVVPRVITSRGGHQIHLAVDIEDGNFDESNPDRLGPDVRRGKVSTQAVMAEKRSLVV 497 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 G + + +PLL IP+LG ALF ++ E TP ++ + Sbjct: 498 GGFHVTESSDKQRKVPLLGDIPLLGKALFSSTERQNNRRERLFILTPRVIGDQSDPSRYL 557 Query: 430 PDDHYSV 436 P D Sbjct: 558 PADDQVE 564 >gi|110835094|ref|YP_693953.1| fimbrial assembly protein pilQ [Alcanivorax borkumensis SK2] gi|110648205|emb|CAL17681.1| Fimbrial assembly protein pilQ precursor [Alcanivorax borkumensis SK2] Length = 723 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 5/202 (2%) Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + D G S L E L ALE +A P + Sbjct: 521 FQFQEAENDDDLIVDLGVDSASASRFAVGFTSLASGLIELELSALEAEGHGELVATPKVL 580 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 Q A + GQ + +++S+GATS+ + + L TP + G I + ++ Sbjct: 581 TADQQPA-VIASGQQVPFEIATSSGATSIDFVEAELRLEVTPHITPDGNIIMMLKVNNDS 639 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++ + + +T+V + G T+VL G+ + + P L +P +GALF Sbjct: 640 F----SSDGSAAINTNRVETSVLVNDGETVVLGGIFQQEKINSVTKTPFLGDLPWIGALF 695 Query: 399 RNSRFNREETEIFIAATPFLVK 420 R + + E+ I TP L+K Sbjct: 696 RKTVNRDNKQELLIFITPRLMK 717 >gi|293603728|ref|ZP_06686147.1| type II secretion system protein D [Achromobacter piechaudii ATCC 43553] gi|292817902|gb|EFF76964.1| type II secretion system protein D [Achromobacter piechaudii ATCC 43553] Length = 611 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 81/456 (17%), Positives = 159/456 (34%), Gaps = 50/456 (10%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV-QDVLVSDPTK----- 76 + P A I I + L+ + +P + ++ Sbjct: 176 ALRKPVSLNFKAQPIVQILDTISLAAGVDFVLDPDVQTSMPASIMARQTTAEDAINLLLR 235 Query: 77 ---ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD-ILIERDIAHLEMTLRRFIA 132 + V T+ ++ + + ++++ L D H+ LR+ A Sbjct: 236 TNQLEKKVLDAHTLLIYPSRPDK------DKEYRELMVRVFYLNHADATHVLAALRQISA 289 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 N+ ++ ++ V++ + ++V+ L+IA Sbjct: 290 PKNVHLDERANAVLVRDT------------------------PEVMAVVERVVAALDIAQ 325 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + VT+ V + EV + ++G + S + + G + GV Sbjct: 326 SE-VTMDVQVLEVNANDELEVGVDYPSDLRFSVLPQGENGRITVGDL-LGLNQGKIGVTS 383 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTH 310 R L+ L++ + LA P + + + AS G + T +++ G SV Sbjct: 384 RNDLSAALNLLQKRGKTKVLANPKIRVRNMEKASIKIGEKVPVVTTTNANGVVTESVNYQ 443 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGT 367 D G++L P + + +++ EVS V G + R A+T + G T Sbjct: 444 DVGLILQVEPRISLSNEVSVKVSMEVSNLKGEVKTAGGGVVYPMSTRNAETVMTARDGET 503 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 VLAGL+ + G+P LS + LG+LF + + TEI + TP + + +A L Sbjct: 504 QVLAGLVNQQQTRSSSGVPGLSVMGWLGSLFGGQKKTDQNTEIVLLLTPHIERSMA---L 560 Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 D Y + + P +E + Sbjct: 561 PSAADSYFPSGTESRVTVSPMTTQAPPAATTEADIP 596 >gi|323143301|ref|ZP_08077992.1| type III secretion outer membrane pore, YscC/HrcC family [Succinatimonas hippei YIT 12066] gi|322416918|gb|EFY07561.1| type III secretion outer membrane pore, YscC/HrcC family [Succinatimonas hippei YIT 12066] Length = 610 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 95/260 (36%), Gaps = 24/260 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-----TGSSSGPSKSFAADFGG 236 + V+ L++ V L I +V +G +G ++ G Sbjct: 297 EDVIKELDVPVRL-VELHAAIVDVDVGAADSLGIDWQAARRTGNWQIAGGVGHQISNSGS 355 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + GG FS D+ +F ++ LE RTL P++ + A+ + K Sbjct: 356 LNPNGGGIFSTVFSTDQSAFMMQVNMLEEDNKARTLGRPSVLTLDNVEATLEDTTTNYVK 415 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---------IGLRIQTEVSEPVIGVNAGD 347 ++ + G +L TP ++ I L+ + + + D Sbjct: 416 VA--GNESSDLFEVVSGTILRVTPHIIDSHDGSAPYIQMVISLQTNQDTDQSQSYTVSSD 473 Query: 348 -------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +P + +T + G +++L G ++ + GIP+L IP++G LF + Sbjct: 474 AQGADERIPVIKKTTINTQALVQQGQSLLLGGYYMENHRNSDNGIPVLKDIPLIGGLFGS 533 Query: 401 SRFNREETEIFIAATPFLVK 420 S + E + TP ++ Sbjct: 534 SSDEATQRERLLLITPRILD 553 >gi|294056469|ref|YP_003550127.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] gi|293615802|gb|ADE55957.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] Length = 452 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 111/282 (39%), Gaps = 26/282 (9%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 GMV +S + + + K ++ L+ Q+ ++ I E+ Sbjct: 102 GMVAASVESDQII---------VSDRSSNIALLKSIIQRLDKPVP-QILVEARIVELNIS 151 Query: 209 ILKQIGFQHSITGSSSGPSKSFAA---------DFGGKFVSEGGDFSVKGV---LDRFSF 256 + ++ P A + GG + G + SF Sbjct: 152 SDLEREVDLYYQNIATDPLTGQLAIVDEIGSKLNVGGATPNTGQGGILNSQVWDNGGESF 211 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YKTVSSSTGATSVTTHDYGV 314 + LE + + L+ P L G+ S +G + +T SS TS G+ Sbjct: 212 NAFVRYLESSGKAKILSAPNLIIQRGKEGSIVTGEEVPILSQTTSSGGVTTSTEFKSVGI 271 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L PT+++ R+ L + EVS + I P VR+A T +E+ G I +AG Sbjct: 272 KLSVKPTMIAGTRVRLEVNPEVSTVIDYIEAGGVSNPIIAVRQARTELEVNDGQLISMAG 331 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 LL+ + + P+LS+IPILGALF++ R +T++ I Sbjct: 332 LLQSTERDTERRTPILSQIPILGALFKSDREQSSQTQLIIFL 373 >gi|226326440|ref|ZP_03801958.1| hypothetical protein PROPEN_00288 [Proteus penneri ATCC 35198] gi|225205223|gb|EEG87577.1| hypothetical protein PROPEN_00288 [Proteus penneri ATCC 35198] Length = 601 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 78/237 (32%), Gaps = 21/237 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L + I ++ ++ +G SS S F Sbjct: 120 KRQVELSLWIIDISKNKADSLGIDWQAGYSSGNHSFFFNTSSLSAA-------------S 166 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +F + AL + ++ P L A F + + ++ + + Sbjct: 167 GLNFLGKIRALTEDGDAKMVSRPILLTQENTPAIFDNNTTFYTQI--KGERVATLESTTF 224 Query: 313 GVVLHFTPTVLSPGR-----IGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGG 366 G ++ P + + + I L E + +P T + GG Sbjct: 225 GTMMSVLPRIGNSNKEIEMIINLEDGAEKKDDKAKDETVESLPVINRTNISTVARVSEGG 284 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 ++++ G ++D + IP+LS IP++G LF N ++ P L+ Sbjct: 285 SLLIGGYTREDNINAETKIPVLSSIPLIGGLFSYKSDNNKKMVRIFMLQPRLLDNTE 341 >gi|292487037|ref|YP_003529907.1| type III secretion system outer membrane pore HrcC [Erwinia amylovora CFBP1430] gi|292900578|ref|YP_003539947.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|1336093|gb|AAB49179.1| HrcC [Erwinia amylovora] gi|291200426|emb|CBJ47554.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552454|emb|CBA19499.1| Type III secretion system outer membrane pore HrcC [Erwinia amylovora CFBP1430] Length = 676 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 72/481 (14%), Positives = 138/481 (28%), Gaps = 58/481 (12%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73 L + + + V+ + G + + + + D + V+ Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELVKRFSEQREKKEDRRKVMTFPL 183 Query: 74 --PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 + AD +H + G A ++ N + +R + Sbjct: 184 RYASVADRTIHYRDQTVVI---PGVATML----------NELMNGKRAAPASASGIDSTP 230 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAV-----------ELSETFLSQSGRNQYANSS 180 + M + +L + + S RA +S + + + + Sbjct: 231 GGPDTNSMMQNTQTLLSRLSSRNKTSNRAGGRDNEIEDVSGRISADVRNNALLIRDDDKR 290 Query: 181 SKKVMNLLNIAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + L+ Q V + I ++ R L ++ T S + G F Sbjct: 291 HDEYSQLIAKIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLF 350 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 VS D F + ALE +A P++ + Q A Sbjct: 351 VS-----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT 399 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KA 356 + G L TP + G +++ ++ + + N + R Sbjct: 400 --GERVADIQPVTAGTSLQVTPRAVGNEGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTV 457 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + +VL G ++ IPLL IP LG LF + R + + TP Sbjct: 458 STQALISENRALVLGGFHVEESADRDRRIPLLGDIPWLGQLFSSKRHEISQRQRLFILTP 517 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIG 470 L+ D+ DA RV + + E + + + G Sbjct: 518 RLIGDQTDPTRYVTADNRQQLSDA----MGRVERRHSSVNQHDVVENALRDLAEGQSPAG 573 Query: 471 F 471 F Sbjct: 574 F 574 >gi|257092259|ref|YP_003165900.1| type II and III secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044783|gb|ACV33971.1| type II and III secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 624 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 54/353 (15%), Positives = 118/353 (33%), Gaps = 41/353 (11%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVR 206 V + A + + + +KV ++ + + QV ++ TI EV Sbjct: 274 TVVKRMTYREAASVIANPEGGVITVRATSRQHEKVQEFLDRVMSSARRQVLIEATIVEVT 333 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 Q G Q + S + S + + ++ S + L Sbjct: 334 LSDGYQQGIQWNRLTSGTEYSVTKPTLTTNVQNAVTPYVIKYSNINPASLLATVELLRLF 393 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------------------GAT 305 ++ L+ P L ++ Q+A+ +Y +V T Sbjct: 394 GTVKVLSSPKLAVLNNQTATLRVSEDFVYFSVKQDAASAVGVVVGGAAAASGPVSNPTTT 453 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---------------VIGVNAGDMPS 350 + + G + T + G + L ++ +S +P Sbjct: 454 TPQSVSIGFFMSLTAQISDSGTVTLNVRPSISFIADLKQDPNPGLVNPKTGNTIPNLVPQ 513 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R R+ ++ + + SG VL GL++D I +P L IP +G +F N + ++E+ Sbjct: 514 IRTREIESMLRVESGDIAVLGGLMEDRIGNTVGRLPGLGDIPFVGEVFNNRGNSSSKSEL 573 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 + P +++ ++ + + D F ++V + + + + Q Sbjct: 574 VVLLRPTVIRDASIDGDFSSFREFLPKKD--FFRTDQVYRPFSLPDQTPEPLQ 624 >gi|162454464|ref|YP_001616831.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So ce 56'] gi|161165046|emb|CAN96351.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So ce 56'] Length = 774 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 106/296 (35%), Gaps = 44/296 (14%) Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 T + + + ++++ L+ QV ++ + E ++ IG Q G+ S Sbjct: 474 RTNVLIARDVAGNLNQIEELVRSLDTQTP-QVLIEARVVEATSRYVRDIGIQWGGDGTFS 532 Query: 225 GPSKSFAA----------------------------------------DFGGKFVSEGGD 244 + + G Sbjct: 533 AATGNPTGLVFPSAIGIAGGATDSNSPTGGLSPFSSQVSNPNFAVNLPAIVGAGQGGALG 592 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F++ + + + L A E + +R ++ P + + + A + G + +S+ Sbjct: 593 FTLGSINNTVNLGVRLSAAEASGMLRVVSSPRILTLDNREARISQGTLIPFSQISAQGVQ 652 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELP 363 T T + + L P V S G + + ++ EP +A P+ R+A+T + + Sbjct: 653 T--TFQEAKLQLLVKPHVTSDGSVAMHVKINRDEPDFNQTSARGDPTILKREAETDLLIM 710 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T V+ G+ + + + +P IP+LG LF+ R + E+ I TP +V Sbjct: 711 DGHTAVIGGIFTRNTGRNLDQVPFFGDIPVLGLLFQRRRASDTRNELVIFLTPRIV 766 >gi|237653194|ref|YP_002889508.1| general secretion pathway protein D [Thauera sp. MZ1T] gi|237624441|gb|ACR01131.1| general secretion pathway protein D [Thauera sp. MZ1T] Length = 728 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 59/358 (16%), Positives = 116/358 (32%), Gaps = 45/358 (12%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G + + + + + V++ L+ QV ++ IAE+ Sbjct: 362 AGGLSSATRGGMVQPDAVNNALIITAPDAVYRNLRAVIDQLD-RRRAQVYIEALIAEIST 420 Query: 208 DILKQIGFQH-------------------------SITGSSSGPSKSFAADFGGKFVSEG 242 + + GFQ + S+ ++ + G V G Sbjct: 421 ERAAEFGFQWVAGASAGEVGVLGAQLFNSGGGNLGQLIAGSADRTRLTLPNNGLNLVVGG 480 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G +V G+ + S + LE + L+ P L + + A G + T + Sbjct: 481 GKVNVPGIGEVLSLGVLARFLENEVSANILSTPNLITLDNEEARIVVGRNLPFVTGQYAN 540 Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSY 351 ++ D G+ LH P + G I L+I E S V + Sbjct: 541 TGGGTTPANPFQTIERRDVGLTLHVKPQISEGGAIRLQIYQEASAVVGSAESAAAGNSVT 600 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R ++ V + G + L GL++D +E +P+L +P G+LFR R +T + Sbjct: 601 TKRSIESMVLVDDGAILALGGLVEDSYSGGEEKVPVLGDLPFAGSLFRYDTRKRAKTNLV 660 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 + P +++ + D + R +++ + Sbjct: 661 VFLRPVILR--DRESYAALTDSRYD------YVIGRRDQLPSGANLLRDPPPGEPAPV 710 >gi|242310207|ref|ZP_04809362.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523504|gb|EEQ63370.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 502 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 34/295 (11%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------- 219 L ++ + + L+ + QV + V I + G Sbjct: 198 LVSVRGDKEGLERVEAYIQKLHQRLQQQVLIDVHILSITHTHSDTTGINWDGLYNIQNIM 257 Query: 220 -----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIR 270 G+S G G V + G +++ ++ S ++ L+ + Sbjct: 258 IPTFSEGASFGGGGEVGNVSGINIVGQNGSNALQYGINIFSQGLSLNRIIEFLKTYGKVE 317 Query: 271 TLAEPTLTAISGQSASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +++ P + ++ Q A + G Q+ + + + GV+L TP Sbjct: 318 SISNPKVLTLNNQPAMISVGDILRYQKSSIYQNTNAQTTLTNTDNEYPSIFAGVLLDITP 377 Query: 321 TVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 + I L+I +++ P+ + + V + + IVL GL+ Sbjct: 378 VIFGD-EIMLKINPSITKTKENRTEIPATAFESPPNLTTNQLSSIVSVKNNQKIVLGGLI 436 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 +I ++ IP+L IP++ LF S+ EI P ++ +LS Sbjct: 437 SKNISSIENKIPVLGSIPLIKPLFSYSQDIERTEEIVFIIEPKIISQEIQENLSL 491 >gi|171462916|ref|YP_001797029.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192454|gb|ACB43415.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 209 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 82/206 (39%), Gaps = 4/206 (1%) Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S T + F ++ + L ALE + L+ Sbjct: 6 TMMSYTWQKLVGNLDLGGPGLSSFNPATVAATLVSRNASRILQAELSALESEGQGKILSN 65 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + A+ G + Y+T + + + + + L P + G+I + Sbjct: 66 PRIMTGDQVKATIELGTELPYQTSNQNG--SKLQFRKANLRLEALPKIHPDGKISML--V 121 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +++ +G+ + + + V + +GGT ++ G+L+ ++ + IPLL IP++ Sbjct: 122 GINKDTVGMKTEQGYAIDTKSLSSEVTVENGGTAIIGGILQTTEREDEVKIPLLGDIPLI 181 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G FR+ +++TE+ + TP ++ Sbjct: 182 GHFFRHKSKLQDKTELLVFLTPTVLD 207 >gi|254428336|ref|ZP_05042043.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp. DG881] gi|196194505|gb|EDX89464.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp. DG881] Length = 693 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 5/195 (2%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 D G + L E L ALE +A P + Q A Sbjct: 498 NDDDLIVDLGVDSANASRFAVGFTSLASGLIELELSALEAEGHGELVATPKVLTADQQPA 557 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 + GQ + V++S+GATS+ + + L TP + G I + ++ ++ Sbjct: 558 -VIASGQQVPFEVATSSGATSIDFVEAELRLEVTPHITPDGNIIMTLKVNNDSF----SS 612 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + + +T+V + G T+VL G+ + + P L +P +G LFR + Sbjct: 613 DGSAAINTNRVETSVLVNDGETVVLGGIFQQEKINSVTKTPFLGDLPWIGNLFRKTVNRD 672 Query: 406 EETEIFIAATPFLVK 420 + E+ I TP L+K Sbjct: 673 NKQELLIFITPRLMK 687 Score = 38.2 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 18/169 (10%), Positives = 54/169 (31%), Gaps = 3/169 (1%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + VG ++ + L++ ++ I L ++I + + + G Sbjct: 308 RQVGNVLLVAPADEIAAREQLELESQKKIEALAPLRTQYININYANASELKGLIANAGGK 367 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDI 209 S R + + + + ++++ L++ QV ++ + D+ Sbjct: 368 GEALVSSRGSVVVDQRTNTLIVQDTQAKLEEIRELIDQLDVP-VQQVLIEARVVVATNDV 426 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 + G + G ++ +G + + +D +F Sbjct: 427 TDEFGVRWGGLGFNAESMLQDQRTYGVSGRLQSLRNLHQTNIDGAAFAA 475 >gi|301166568|emb|CBW26144.1| putative general secretion pathway protein D [Bacteriovorax marinus SJ] Length = 765 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 67/381 (17%), Positives = 121/381 (31%), Gaps = 59/381 (15%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS---NIRVEMVSDTV------VLHG 149 +I + + + + L L + +S I V ++ L Sbjct: 284 LIAEPRTNSIIAMTNAEGAKQLNALIKKLDVKLVNSSSGQIHVYYLNHGTSETLAKTLSS 343 Query: 150 MVRTIQDSQ----RAVELSETFLSQSGRNQYANSSSKKVMNLLNI--------------- 190 +V + Q R ++ S S N ++ K N + + Sbjct: 344 LVTSAQPKTSTRSRLSRVASNDDSTSLFNAEVKITADKENNAIVVTASPTDYLTIKEVIK 403 Query: 191 ---AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 DQV ++ I E K G S K+ G + + Sbjct: 404 KLDRPRDQVFVEGMIMETSVTKDKGFGINIIGAYGSGATDKAGFVGNGTDLFNVMSNNIT 463 Query: 248 KGVLDRF--------------------SFETVLHALERATAIRTLAEPTLTAISGQSASF 287 S ++ A+ LA P + A+ + A F Sbjct: 464 ALGGLFVGGGTGSSVTQTVSGQEVKIKSVSGLITAIASNAGTNVLATPQIMALDNEEAVF 523 Query: 288 TSGGQHLYK---TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGV 343 G ++ + + S+ + L TP V R I L+I ++ + Sbjct: 524 EVGESIPTPERTNAANGSSSVSIKQQKVAMTLKITPQVNKVTRFIKLKIDQKIDDFSSRS 583 Query: 344 NAGDMPS----YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + S R A T+V + TI + GL++D + +PLL IP+LG LF+ Sbjct: 584 LPSGVQSDGVATTTRSAVTSVVVRDRDTIAMGGLMRDKETDVTSKVPLLGDIPVLGWLFK 643 Query: 400 NSRFNREETEIFIAATPFLVK 420 N+R + E+ + TP ++ Sbjct: 644 NTRKSVEKLNLLFFLTPKIID 664 >gi|42524677|ref|NP_970057.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100] gi|39576887|emb|CAE78116.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100] Length = 433 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 78/414 (18%), Positives = 141/414 (34%), Gaps = 39/414 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +GL + + + V + D R + L G+ G V + Sbjct: 17 SQTALVLGLGEQKTVPLQGQ-DRVWIQDREILTAEGQGGR-LLLVGRREGFTTVKV---- 70 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G + ++ +L + + + +++ G + +QD + Sbjct: 71 GAVLYSVQVLHPSKKDSFQDLTTYLKTRVGLHASLKEGDLLIEGQLYRLQDWIHLADHMR 130 Query: 166 T-----FLSQSGRNQYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVRRDILKQ------- 212 T + + + NL A Q + EVR Q Sbjct: 131 TKNLNYQMRARMTASLQQLAQEHFSNLFYKAHLPPQTLIFEPALEVRVSGTDQTFRKYSR 190 Query: 213 ----IGFQHSITGSSSGPSKSFAADFGG--------------KFVSEGGDFSVKGVLDRF 254 G +S + + GV +R Sbjct: 191 LLMPFGVSLLKDETSLDIAPTIKVQITVAEIKKDFSLKYGLRPPAGYSAKLMPDGVWERD 250 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 L ALE + LA P + SG+ A F +GG+ K ++ + YG+ Sbjct: 251 ELPFNLTALEAQGQGKILASPNILCRSGKEAEFLAGGEFPIKIMNY--KMQDIVWKRYGI 308 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L P + GR+ + I+TEVS D+P + + +L TI L+GLL Sbjct: 309 LLRVKPKADAAGRMSISIETEVSTVDDSRKVDDVPGILTNRVSSHFDLTRPQTIALSGLL 368 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 K + + EG+PLLS++P++GALF + F +E+ I P +++ + Sbjct: 369 KSEDGKSSEGLPLLSRLPVVGALFASKDFKENRSELVIFVRPSILREGEENPMP 422 >gi|319956469|ref|YP_004167732.1| pilus (msha type) biogenesis protein mshl [Nitratifractor salsuginis DSM 16511] gi|319418873|gb|ADV45983.1| pilus (MSHA type) biogenesis protein MshL [Nitratifractor salsuginis DSM 16511] Length = 511 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 58/379 (15%), Positives = 126/379 (33%), Gaps = 48/379 (12%) Query: 88 YLFGKNVGQANVILIGHDGK-------------QMLNLDILIERDIAHLEMTLRRFI--- 131 Y+ G+ G +N + G + + + ++ + + Sbjct: 119 YVTGQRKGTSNANVQVAGGNSNIDSNDKTPGGSTISIETNQEFQFWSTVKNEIHHILNTA 178 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLN 189 D ++ V D + G + + A + + L Sbjct: 179 GDGSVHFTKVGDEWI--GPDGQKWEYNPLEPVVNPEAGMITVTGTARQVERVSRYLAALT 236 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + +V + V I +VR + G + ++S V+ Sbjct: 237 HQLKTEVMIDVRIIDVRINNNHSYGIDWNKIFNTSIRFTGDVTHGTTNSVTHNVSLKDGS 296 Query: 250 VLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + VL L+ + ++ P + ++ Q A + G + YK Sbjct: 297 DIGDYLPGGGISFTFSGDLTEVLKFLKTQGDVTVVSSPRVMTLNNQPAMISVGQEIYYKL 356 Query: 298 VSS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 ++ ++ V + G++L TP V G I L+I ++ +A ++ Sbjct: 357 TTTNKVGGSDTATSENEEVKSVFAGILLDITPEVDERGMITLKINPSITALANEEDAKNL 416 Query: 349 -------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 P + R+ + +++ G +L GL+ +EG+P+L IPILG F+ Sbjct: 417 QGVRTMPPDIKRRQIASVIKIKDGDHAILGGLITRGHGTKEEGLPVLENIPILGYAFKKE 476 Query: 402 RFNREETEIFIAATPFLVK 420 + E+ + TP +++ Sbjct: 477 QKIDYTDELVLIITPHIIR 495 >gi|294141031|ref|YP_003557009.1| type III secretion system EscC protein [Shewanella violacea DSS12] gi|293327500|dbj|BAJ02231.1| type III secretion system EscC protein, putative [Shewanella violacea DSS12] Length = 491 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 53/310 (17%), Positives = 117/310 (37%), Gaps = 34/310 (10%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--- 195 + +V + G+V +++ + +++ ++ N + + G Q Sbjct: 194 QYREQSVKIPGLVNVLKEMELGNQVANAVSGTVSNVSGPVFAADSRRNAIIVRGSSQDVT 253 Query: 196 ---------------VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 + + V+I ++ KQ+G S + S SF +D + +S Sbjct: 254 TYASLIKQLDNKPTMIEISVSILDIDASDFKQLGVDWSASAQLGNGSVSFNSDTSSENIS 313 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + + +F L+ALE+ + + L+ P++ ++ A K Sbjct: 314 -------TVIGNTGNFMVKLNALEKNSKAKVLSHPSVVTLNNVQAVLDKNVTFYTKL--E 364 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKA 356 + + G +L TP ++ + L + + + V+ + +P + + Sbjct: 365 GDKVAKLESVTTGTLLRVTPRLIEESGHTAVMLNLNIQDGQQSEAVSRSDPLPQVQNSEI 424 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T L SG ++++ G ++D + IPLL IP+LG LFR++ + + Sbjct: 425 STQAILKSGESLLIGGFVQDRDETSDHKIPLLGDIPLLGGLFRSTEHHTQSVMRLFLIKA 484 Query: 417 FLVKPVAMRD 426 +PV D Sbjct: 485 ---EPVNQGD 491 >gi|226327391|ref|ZP_03802909.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198] gi|225203917|gb|EEG86271.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198] Length = 367 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 58/344 (16%), Positives = 115/344 (33%), Gaps = 35/344 (10%) Query: 105 DGKQMLNLDILIERDIAHLEMTLR-RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + +++ + I L + + E + + + TI + + Sbjct: 30 NNEKISSTFIEERTSATEQSEELHHQLYPLNYADAERLGEQL----TNHTIPLLSQQGRV 85 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSIT- 220 + S + + ++ + L + QV + I +D L ++G Q + Sbjct: 86 IIDREANSLSIIDNSKTLSEIEDWLKLRDTPQQQVHITAHIVSSSQDALNELGTQWGLQA 145 Query: 221 --------GSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATA--- 268 ++ + S + + S+ + Sbjct: 146 LKTQTEATSTTVSNTISATSSLNSALSTPSLSALSLHQNTKNPLHYIAFNIARINGRLLE 205 Query: 269 -----------IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 + +A P LT ++AS G + VS T V + + + Sbjct: 206 LELSALEQEKQLSIIASPRLTTAHEKTASIKQGTEIP--YVSRDNEITQVQFKEAVLGME 263 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 TP + +I L ++ + P I + + S ++ T V + G TI+L G+ + Sbjct: 264 VTPIIQRNKKIRLILKISQNTPGIALVQSGSEHLSIDKQEISTEVAIRDGETIMLGGIFQ 323 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 Q+ IP LS IP+LG LF + R E+ I TP L+ Sbjct: 324 QKQQEHTAKIPFLSSIPLLGVLFSHKRDQHSRHELVIFITPKLI 367 >gi|153003602|ref|YP_001377927.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5] gi|152027175|gb|ABS24943.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5] Length = 892 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 114/334 (34%), Gaps = 54/334 (16%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + + G V+ D Q+ L + + + ++++ L+ Sbjct: 419 PSARPGGASDVTASLFSGDVKITADKQQNALLVQA-------SGADFQAIQRLVEKLD-R 470 Query: 192 GEDQVTLKVTIAEVRRDILKQIGF----------------------QHSITGSSSGPSKS 229 QV ++ I EV Q G ++ + S Sbjct: 471 PRRQVFVEAVIMEVNLRDETQFGVGAHGIVPVDYRGDEGFIPISSQPGRVSSFDVTSAIS 530 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G G + S ++ AL+ + + L+ P + A + + T Sbjct: 531 LGGFLTGLNGPPSGVVEDLLGIKVPSLGVIVQALQSSADVNVLSTPHILASDNEESEITV 590 Query: 290 GGQHLYKTVSS-----------------------STGATSVTTHDYGVVLHFTPTVLSPG 326 G ++ + S+ + + + L P + G Sbjct: 591 GQNVPFQAGYAPAGLGNLLTGTTATTSTLGLGGLSSLVAPIQRQNVELRLKIKPQINEGG 650 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L I+ E +E ++ + P+ R A T + TIV+ GL+++ + IP Sbjct: 651 NIRLTIE-EQTEEIVDRDPQLGPTTAKRTAKTQIVAKDQSTIVIGGLIQERNVRSVRKIP 709 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +L +PILG LFR+S ++ T + + TP++++ Sbjct: 710 VLGSLPILGWLFRDSTNTKQRTNLLLFLTPYIIR 743 >gi|116626816|ref|YP_828972.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116229978|gb|ABJ88687.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 752 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 94/257 (36%), Gaps = 18/257 (7%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV- 250 QV + I EV + G + +GP F+ + G + + Sbjct: 488 APRQVLIDAKIYEVDLNGAFAAGVSAYLDKKDTGP---FSRTLNAATGAGGLTLTTGALV 544 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----------KTVSS 300 L L A E A+ + ++ P++ A A+ G ++ S Sbjct: 545 LRSHELLAALTASETASHSKVISAPSIIATDSVPATLNVGDDVPVLTSQAVAGGVQSSGS 604 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358 S +V+ GV L V S G + L + VS P +A PS+ R T Sbjct: 605 SVFTNTVSNRSTGVTLSIMARVNSSGIVTLIVNQNVSSPQPPPANSAIQSPSFSNRSFQT 664 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + G T+ + G++ + Q G+P L ++P +GA F + + TE+ + TP + Sbjct: 665 QLTVQDGDTVAIGGIILESNLQSSAGVPFLHRLPGIGAAFGAKSYTKSRTELVVFLTPRV 724 Query: 419 VKPVAMRDLSRPDDHYS 435 + + D Sbjct: 725 I--YDTNQMVDATDEIR 739 >gi|311235499|gb|ADP88352.1| type III secretion outer membrane pore, YscC/HrcC family [Desulfovibrio vulgaris RCH1] Length = 696 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 62/413 (15%), Positives = 125/413 (30%), Gaps = 55/413 (13%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV-LHGM-------- 150 D + +A + + S RV + TV L G Sbjct: 241 YAWAEDITVNSMDKTVTLPGVASILRAMVSGSPSSATRVTQETATVDKLSGTGLISQGRQ 300 Query: 151 ---VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----------------- 190 +QR + S+ + Q + + +N + + Sbjct: 301 QKESGQSNQAQRGGQASQQDSGGAQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDL 360 Query: 191 -AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSFAADFGGKF 238 + V + I ++ + + +G + T S+G K G Sbjct: 361 DRPVELVEIHAAIVDIDTNFKRDLGVTYQATVGKDQRWAGGADVSTGTDKFTPLPVPGVP 420 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G S + F ++ALE+ R L P++ + A+ + + + Sbjct: 421 QGSGLTLSTIYTMGSDYFLARINALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQV- 479 Query: 299 SSSTGATSVTTHDYGVVLHFTPT--VLSPGRIGLRIQTEVSEPVIGVNA-------GDMP 349 A + + G VL TP G +++ V + +P Sbjct: 480 -QGYQAVDLFKVEAGTVLRVTPHIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIP 538 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + K +T + +G ++++ G + +G+P+L IP+LG LF+ + E Sbjct: 539 PIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRME 598 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 I TP +V+ + +L + + + S G Sbjct: 599 RLILITPKVVR---LDNLPGTPPRVDDPAFHRTATQSDYAERTPTPPPSRRSG 648 >gi|225163988|ref|ZP_03726276.1| type II and III secretion system protein [Opitutaceae bacterium TAV2] gi|224801402|gb|EEG19710.1| type II and III secretion system protein [Opitutaceae bacterium TAV2] Length = 928 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 61/353 (17%), Positives = 115/353 (32%), Gaps = 81/353 (22%) Query: 166 TFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITG 221 + + ++ ++V N+L QV ++ +V+ L ++G S +G Sbjct: 557 AYDGTAIYVTQTTANLERVRNILARYNDVRQVEIEAKFMDVQEGSLDELGISWMVNSFSG 616 Query: 222 SSSGPSKSFAADFGGKF-----------------------------------VSEGGDFS 246 + + + G F + G S Sbjct: 617 KFNAGTGTVVRSLSGAFGVTGASGGGGQIVTPFGTVDVPLSPPATPGTADTGSAVGNIAS 676 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---- 302 + GV+ F + A+ + L+ P +T +SG A + Y T Sbjct: 677 ITGVMGNFDVAAQIRAIAQKQGSDLLSAPKVTVLSGNPAFMVVAQELRYPQSYGETESEV 736 Query: 303 ------------------GATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGV 343 T + GV L TPTV I L + +V+E + Sbjct: 737 GTSSGNGGGAAGVTITPGTPEEFVTRNVGVELRVTPTVEDDNYSITLDLNPKVTEFEGFI 796 Query: 344 NAGD------------------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G P + R+ T V + G T+V+ GL +++++++ + + Sbjct: 797 EYGGSSVAISGNTTVTLPSGYYQPIFSTREVTTKVTVWDGATLVMGGLTREEVKRVNDKV 856 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 P+L IP LG LF++ + ++ + + T LV P P Sbjct: 857 PILGDIPFLGRLFKSKGESSQKRNLLVFVTANLVSPGGSPKKQ-PLQGVQPNS 908 >gi|78223066|ref|YP_384813.1| type II and III secretion system protein [Geobacter metallireducens GS-15] gi|78194321|gb|ABB32088.1| type II and III secretion system protein [Geobacter metallireducens GS-15] Length = 861 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 75/406 (18%), Positives = 136/406 (33%), Gaps = 70/406 (17%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + T+ +F K ++ ++ L D LR + + V Sbjct: 244 KVLNESTILIFPKTPEKSK-----QYEDLVVKTFFLNTLDAKKAVNLLRTMLQVRKVYVN 298 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + +V+ + + + +E AN +V L Sbjct: 299 EELNAIVVRDTSELVDVAGKILE--------------ANDVPD-----------AEVLLD 333 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 V + EV + ++ G S S F S + + + Sbjct: 334 VEVIEVSKRNIENFGLALSKYAVSLNTQTPGGGFLNDTFSRASVSSSTGTTIQGTAGSEL 393 Query: 260 LHALERAT-------------------AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 L LA P + + + + FT G + T S+ Sbjct: 394 LQTFSWNGYSGFMTVPSASYSFGKSITNAEVLANPKIRVKNREKSKFTVGTRVPITTTST 453 Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPS 350 + +V D GV L+ PT++ + +++ EVS +A + + Sbjct: 454 TGTTGGFSVNVQYVDVGVKLNAEPTIMLNNEVSIKLGLEVSSIIDKQTVGGTDSATTVVT 513 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R DT + L G T V+ GL++D+ Q+ K+ I LL IPI+G L N+ + ++ E+ Sbjct: 514 IGTRNLDTVLNLKDGETSVIGGLIEDNKQKGKQKIFLLGDIPIIGPLLSNNSNDNQKREL 573 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 +A TP LV+ V E D +F+ + + K Sbjct: 574 ILAITPRLVRSV-----------TVPEPDLVSFWSGKEDDPSVVKP 608 >gi|34556961|ref|NP_906776.1| putative type II secretion system D [Wolinella succinogenes DSM 1740] gi|34482676|emb|CAE09676.1| PUTATIVE TYPE II SECRETION SYSTEM D [Wolinella succinogenes] Length = 731 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 59/347 (17%), Positives = 114/347 (32%), Gaps = 62/347 (17%) Query: 143 DTVVLHGMVRTIQDSQR-------AVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGE 193 ++ +L G + + Q Q + + + + + L+ + Sbjct: 361 ESEILGGSLESSQAQQARTTKSESGAVIVNRGAGLVTVTGTSPQVDRVAQYIEELHARLQ 420 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS------------------------------- 222 QV + V+I VR + G + + Sbjct: 421 SQVMIDVSILTVRHSKGQTTGVDWNQLYNLQNIAIHTKSTTTSNSSGSGSTSDTTSITTG 480 Query: 223 SSGPSKSFAADFGGKFVSEGG----DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 SG S G + G ++V S V+ L+ + +++ P + Sbjct: 481 PSGTSIQQGTASGASVLGVGSHSQVGYAVNIFSQGVSLTRVIEFLQSYGDVTSVSNPKVL 540 Query: 279 AISGQSASFTSG-----------GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ Q A + G T +++ T + GV+L TP+V + Sbjct: 541 TLNNQPAMISVGNIIRYRKSTVFQTSGSNTGTNTNTDTEYPSVFAGVLLDITPSVFND-E 599 Query: 328 IGLRIQTEVSEPVIG------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 I L+I +++ P+ + + V + G IVL GL+ Q+ Sbjct: 600 IMLKINPSITQTKSTDVENASTALETPPNLSTNQLSSLVRIKDGEKIVLGGLISKSNQKK 659 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 + +PLL +P+LG LF + E+ I TP ++K L Sbjct: 660 ENKVPLLGDVPVLGYLFSYNADVESTDEMVIVITPHIIKGSQGPSLQ 706 >gi|93006993|ref|YP_581430.1| type II and III secretion system protein [Psychrobacter cryohalolentis K5] gi|92394671|gb|ABE75946.1| type II and III secretion system protein [Psychrobacter cryohalolentis K5] Length = 792 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 44/276 (15%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV--- 239 K++ ++I QV ++ I K+IG + I + + +++ + + Sbjct: 514 KLIGKIDIPVR-QVMIEARIVSATDSFSKEIGVRWGILSNGAANNRNLLVGGSNQTLWDL 572 Query: 240 ------------------------------------SEGGDFSVKGVLDRFSFETVLHAL 263 G + F + L A+ Sbjct: 573 KDFDVQTTTINGQTVSYPKYDITRPDNLNVDLGVDNPAGRIAFGLLGISDFMLDLELSAM 632 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + ++ P + Q+A +SG Q Y+ S++GAT+ + + + L TP + Sbjct: 633 QADNRGEVISTPKILTSDKQTAKVSSGTQIPYQEA-SASGATTTSFKEAALSLEATPNIT 691 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G+IGL++ P I N + T V + G TIVL G+ K+ + Sbjct: 692 PDGKIGLQLLITNGTPTIINNQV---AIAEDSISTNVIVEDGQTIVLGGVFKNRTNNGVD 748 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P +G FR + + E+ I TP L+ Sbjct: 749 KVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLI 784 >gi|281354921|ref|ZP_06241415.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281317801|gb|EFB01821.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 794 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 13/247 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GKFVSEGGDFSVK 248 QV ++ I E+ + G Q + G S +F SEG + Sbjct: 496 PAQVLFQILIVEITLTDSNEFGLQFNNVSYGGGTGVSTGTNFNDIGMNDSSSEGFKLGIF 555 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSS 301 + L AL I+ ++ P L S +A G ++ Sbjct: 556 DKDNPEENFGYLRALAGRDNIKVISSPQLLVTSNTTAKIQVGQDVPILTQDLTTSDSATG 615 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTT 359 S T + G++L P V S I ++I+ +VSE +A D P R +T Sbjct: 616 NVTRSYTYEETGIILSLIPQVTSTDLISMQIEQKVSEAIKNTITSATDTPVISTRVLNTA 675 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +G T+V+ G++++ + +P+++ IP L F N+ + E TE+ + T ++V Sbjct: 676 MTIANGKTMVIGGMIQEKNNDRLQSVPIIADIPFLRRFFGNTNQSVERTELLVLVTGYIV 735 Query: 420 KPVAMRD 426 + + Sbjct: 736 NGKSPVE 742 >gi|94987602|ref|YP_595535.1| putative type III secretion protein YscC [Lawsonia intracellularis PHE/MN1-00] gi|94731851|emb|CAJ55214.1| putative type III secretion protein YscC [Lawsonia intracellularis PHE/MN1-00] Length = 583 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 98/293 (33%), Gaps = 24/293 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------GKFVSEGGDF 245 V + I ++ + + +GF S + G G + Sbjct: 289 VEIHAAIVDIDSEFKRDLGFTLQQGSSKKSMTMGGDFSTTQQSLPLEITKGTVEGGGLTY 348 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 S F + ALE R L +P++ + A+ + + + T Sbjct: 349 STIYSKGVEFFLARVQALETEGEARVLGKPSVLTVDNIQATLENTSTYYIQVQGYQT--V 406 Query: 306 SVTTHDYGVVLHFTPTVLSPGR--------IGLRIQTEVSEPVIGVNAGDM-PSYRVRKA 356 + + G VL TP ++ + + + V + + P + + Sbjct: 407 DLFKVESGTVLRVTPHIIYNNDGTKSIKLVVAIEDNQNDNSTDPTVGSNVVLPPIKQTRI 466 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T + +G ++++ G + +GIP+L IPI+G LF+ + ++ E I TP Sbjct: 467 NTQGVVNTGQSLLIGGYYYEQQGVNDKGIPILKDIPIIGYLFKTNTKTSKKMERLILITP 526 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 ++ P ++ H ++ + + I + + + Sbjct: 527 RIIMP---NTVTPIPAHVDDPSFHRSAVQDTYDDIKPKSSTGGGCSRKRRAPV 576 >gi|317486813|ref|ZP_07945629.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila wadsworthia 3_1_6] gi|316921976|gb|EFV43246.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila wadsworthia 3_1_6] Length = 614 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 58/313 (18%), Positives = 111/313 (35%), Gaps = 29/313 (9%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 G Q++ + +++ ++ N KV+ L+ + V + I ++ Sbjct: 250 GGQAAPQNATQVNIMADPRVNAVLVNDAEYRMPYYAKVIADLD-RPVELVEIHAAIVDID 308 Query: 207 RDILKQIGF----------QHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFS 255 D + +G S G SG F+ S G + S Sbjct: 309 SDFKRDLGVTYQGANSRDKGWSTGGEFSGTGDKFSPLPTMGTPSGTGMNLSTIYTHGADF 368 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + ALE R L P++ + A+ + + + A + + G V Sbjct: 369 FLARIQALEAEGEARMLGRPSVLTVDNVQATLENTSTYYIQV--EGYQAVDLFKVEAGTV 426 Query: 316 LHFTPTVLSPGR--------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 L TP ++ R + ++ S+ V+ +P + K +T + +G + Sbjct: 427 LRVTPHIIRNERGQTSIKLAVSVQDDQNDSKDAP-VSDNSVPPIKQTKINTQAIVGAGQS 485 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----PVA 423 +++ G + GIP+L IP+LG LF+ + + E I TP ++ P Sbjct: 486 LLIGGYYYEQKSTDASGIPILMHIPVLGNLFKTTSKGTKRMERLILITPKVIHLDEIPTT 545 Query: 424 MRDLSRPDDHYSV 436 + P H S Sbjct: 546 PPRVDEPTFHRSP 558 >gi|283786644|ref|YP_003366509.1| T3SS structural protein EscC [Citrobacter rodentium ICC168] gi|15723915|gb|AAL06362.1|AF311901_14 EscC [Citrobacter rodentium] gi|282950098|emb|CBG89732.1| T3SS structural protein EscC [Citrobacter rodentium ICC168] Length = 512 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 101/247 (40%), Gaps = 23/247 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + V+I +V + L+Q+G S T ++ S +F + + + S + + Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQSSIAFNSS------AAQANISSSVISNA 327 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F ++AL++ + + L++P++ ++ A K S S+ + G Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385 Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358 +L TP +L L V++ I +P + + T Sbjct: 386 TLLRVTPRILDDTSNSLTGKRRERVRLLLDIQDGNQSVNQSNIQNAGSLLPEVQNSEMTT 445 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505 Query: 419 VKPVAMR 425 ++ + Sbjct: 506 IRSASSE 512 >gi|325521797|gb|EGD00533.1| putative type IV pilus secretin [Burkholderia sp. TJI49] Length = 215 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 3/187 (1%) Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G F + F++ + L ALE + ++ P + A G + Sbjct: 1 TGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRAKAIVEQGAELP 60 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 Y+ G + V + L P + GR+ L + +V++ +G P+ + Sbjct: 61 YQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTK 117 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T VE+ GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + Sbjct: 118 HVQTRVEVEDGGTVAIGGIYERLRRDDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFI 177 Query: 415 TPFLVKP 421 TP +V+ Sbjct: 178 TPTVVRA 184 >gi|237753431|ref|ZP_04583911.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229375698|gb|EEO25789.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 487 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 99/285 (34%), Gaps = 34/285 (11%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------- 217 L ++ + + + L+ + QV + V I VR + +K +G Sbjct: 186 LISVKGDKKSLQKVESYIEALHKRLQKQVLIDVQILSVRHNNVKTMGINWDSLYNLQNLM 245 Query: 218 -------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 + G + + G + + S ++ L+ ++ Sbjct: 246 IPPFSESATLGGNGEIGSTSGISITGGSKGSSVQYGLNIFSAGLSLNRIVEFLKGYGEVQ 305 Query: 271 TLAEPTLTAISGQSASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +++ P + ++ Q A + G Q+ + + + GV+L TP Sbjct: 306 SISNPKVLTLNNQPAMISVGDILRYKKSNIYQNTNAQTTLTNTNNEYPSIFAGVLLDITP 365 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLL 374 V I L++ +++ P+ + + V++ + ++L GL+ Sbjct: 366 LVFED-SIMLKVNPSITKTKDMQTKIAASAFDAPPNLTTNQLSSIVKVKNNQKVILGGLI 424 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + IPLL IP++ LF + + EI TP ++ Sbjct: 425 AQNTAKESNKIPLLGDIPLIKPLFSYTHDSISTEEIVFIITPRII 469 >gi|323189406|gb|EFZ74687.1| hypothetical protein ECRN5871_2294 [Escherichia coli RN587/1] Length = 512 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + + Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F ++AL++ + + L++P++ ++ A K S S+ + G Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385 Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358 +L TP +L L ++ + +P + + T Sbjct: 386 TLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSSNQSNAQDASSTLPEVQNSEMTT 445 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505 Query: 419 VKPVAMR 425 +K + Sbjct: 506 IKSASSE 512 >gi|229588267|ref|YP_002870386.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] gi|229360133|emb|CAY46990.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] Length = 713 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 51/326 (15%), Positives = 98/326 (30%), Gaps = 20/326 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 ++ L L + +N + + + R Sbjct: 253 TPNVPRLGNPLLGQMLGANGNAGQLDTGPTVTPRAPVSKSRIRVEADVRNNAVLIYDLPE 312 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 + + ++ L++A + + + I ++ R L++ G S + A Sbjct: 313 RQAMYRDLITQLDVARKL-IEIDAIILDIERTQLREFGVNWGFQNSRFRGGVNMAPGTSS 371 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + +R F + ALE ++ P++ + Q A Sbjct: 372 QV----------SIENRDRFYADIRALEAKGLATMVSNPSVLTLENQPAVIDFNRTQYIS 421 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN--AGDMPSY 351 VT G L P V + +I L + E + P Sbjct: 422 PGRDYATILPVT---VGTSLQVVPRVTTGRGVHQIHLVVDIEDGNFDETNPERDPNHPDV 478 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEI 410 R K T + ++V+ G D ++ IPLL IP+LG LF ++ + E Sbjct: 479 RRGKVSTQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKTLFSSTERHNNRRER 538 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSV 436 TP ++ P D + Sbjct: 539 LFILTPRVIGDQDDPSRYLPQDDQAE 564 >gi|259909699|ref|YP_002650055.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcC protein [Erwinia pyrifoliae Ep1/96] gi|224965321|emb|CAX56853.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcC protein [Erwinia pyrifoliae Ep1/96] gi|283479785|emb|CAY75701.1| Type III secretion system outer membrane pore HrcC [Erwinia pyrifoliae DSM 12163] Length = 676 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 68/475 (14%), Positives = 138/475 (29%), Gaps = 40/475 (8%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73 L + + + V+ + G + + + + D + V+ Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELVKRFSEQREKKEDRRKVMTFPL 183 Query: 74 --PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRR 129 + AD +H + G A ++ L+ + ++ + Sbjct: 184 RYASVADRTIHYRDQTVVI---PGVATMLNELMNGKRAAPASASGSDSAPGGPDTTSMMQ 240 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 R+ + + G + D + +S + + + + + L+ Sbjct: 241 NTQTLLSRLSSRNKSANKAGGRDSDID-DVSGRISADVRNNALLIRDDDKRRDEYSQLIA 299 Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 Q V + I ++ R L ++ T S + G FVS Sbjct: 300 KIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS------- 352 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 D F + ALE +A P++ + Q A + Sbjct: 353 ----DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 406 Query: 308 TTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365 G L TP + G +++ ++ + + N + R T + Sbjct: 407 QPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALISEN 466 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL G ++ IPLL IP +G LF + R + + TP L+ Sbjct: 467 RALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIGDQTDP 526 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIGFIYK 474 D+ DA RV + + E + + + GF + Sbjct: 527 TRYVTADNRQQLSDA----MGRVERRHSNVNQHDVVENALRDLAEGQSPAGFQVQ 577 >gi|312114563|ref|YP_004012159.1| type II and III secretion system protein [Rhodomicrobium vannielii ATCC 17100] gi|311219692|gb|ADP71060.1| type II and III secretion system protein [Rhodomicrobium vannielii ATCC 17100] Length = 636 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 75/462 (16%), Positives = 158/462 (34%), Gaps = 55/462 (11%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK-VIILQVPVDVQDVL----- 70 + P A + + + ++ +K L V V ++V Sbjct: 185 LVLAAFRSASPVAVNFRDAKLKDALKTLCDPYALNFVFDKNADNLDVSVSARNVSFEQAF 244 Query: 71 --VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 + + A V +++++ + ++ ++ L+ Sbjct: 245 NMIMQSSNAAYKVLGTNSIFIYEDTP----------EKRKQYADRYFKTFHLSTLKAERM 294 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 I +++ V+ V L G ++ I+D++ +E++E ++ + Sbjct: 295 AEILKASMDVKTVFANNDL-GTIQ-IRDTRETLEVAERLIATND---------------- 336 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 ++ L+V I E+ R +Q+G + + + P SF G ++ + Sbjct: 337 --RKPAEIMLEVEILEIDRTKAEQLGLDYGSSITVQLPQVSFTDLANGAKLATNSVITFP 394 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGA 304 + L+ RTL+ P + + GQ A G + ++ + Sbjct: 395 --------TVTFNYLKTDVGARTLSNPRIRTVDGQPAKIHVGDRVPLQSSFVQDTTGQTR 446 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVEL 362 T HD G+ L P G I + ++ EVS + P+ R TT+ L Sbjct: 447 TLFEYHDIGIQLDVIPKYHLDGSIFVDLKIEVSSLGSNLGTAAQPAYAIGSRNVHTTMIL 506 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPL-LSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 T +L GL+K++ Q G+P+ S + +L LF S +E+ + TP L++P Sbjct: 507 RENETALLGGLIKEEEQHNMNGLPVERSGVSVLDRLFSTSSDKVGRSELLLTITPRLIRP 566 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 + R + + + E+ Sbjct: 567 QSFA--QRSATDFYSGTEGTYSIRAEHEYLKKAPESGLAPRY 606 >gi|39996877|ref|NP_952828.1| type II secretion system protein [Geobacter sulfurreducens PCA] gi|39983765|gb|AAR35155.1| type II secretion system protein, putative [Geobacter sulfurreducens PCA] gi|298505890|gb|ADI84613.1| type II secretion system secretin lipoprotein PulQ [Geobacter sulfurreducens KN400] Length = 822 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 74/412 (17%), Positives = 138/412 (33%), Gaps = 79/412 (19%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + T+ +F K +A M+ L D LR + I V Sbjct: 244 KVLNESTILIFPKTPEKAK-----QYEDLMVKTFYLNSLDAKKAVNLLRTMLQVKKIYVN 298 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + +V+ + A ++ E V L+ Sbjct: 299 EELNALVIR---DNPELIDVAGKILEANDVPDAE----------------------VLLE 333 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------------- 242 V + +V ++ + G S S + GG F S+ Sbjct: 334 VEVIQVSKNNSELFGLGLSRYAVSLN---ARTPGSGGDFFSDTFDPKVTTTSNDTTTVTT 390 Query: 243 -------GDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 F+ G + + ++ + L+ P + + + + FT G + Sbjct: 391 TQVKNLLNLFNWNGYQGFLTVPSATYNFSKQLSNAEVLSNPKIRVKNREKSKFTVGTRVP 450 Query: 295 YKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 T SS+ +V D GV L+ P + + +++ EVS + G + Sbjct: 451 ITTTSSTGSVGGVTVNVQYVDVGVKLNAEPVIQLNNEVTIKLGVEVSSIIGEKTVGSGDA 510 Query: 351 YR------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 R DT + L G T ++ GL++D + K+ I LL IP++G+L + Sbjct: 511 ISSVVTIGTRNVDTVLNLKDGETSIIGGLIEDTKSKSKQKIWLLGDIPLIGSLLSSHNDR 570 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 +++E+ +A TP +V+ V+ E D AF+ + + K Sbjct: 571 YDKSELVLAITPRIVRAVS-----------VPEADVAAFWSGKEDDPTAVKP 611 >gi|266635497|gb|ABA39798.2| HrcC [Erwinia pyrifoliae] Length = 676 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 68/475 (14%), Positives = 138/475 (29%), Gaps = 40/475 (8%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73 L + + + V+ + G + + + + D + V+ Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELVKRFSEQREKKEDRRKVMTFPL 183 Query: 74 --PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRR 129 + AD +H + G A ++ L+ + ++ + Sbjct: 184 RYASVADRTIHYRDQTVVI---PGVATMLNELMNGKRAAPASASGSDSAPGGPDTTSMMQ 240 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 R+ + + G + D + +S + + + + + L+ Sbjct: 241 NTQTLLSRLSSRNKSANKAGGRDSDID-DVSGRISADVRNNALLIRDDDKRRDEYSQLIA 299 Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 Q V + I ++ R L ++ T S + G FVS Sbjct: 300 KIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS------- 352 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 D F + ALE +A P++ + Q A + Sbjct: 353 ----DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 406 Query: 308 TTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365 G L TP + G +++ ++ + + N + R T + Sbjct: 407 QPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALISEN 466 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL G ++ IPLL IP +G LF + R + + TP L+ Sbjct: 467 RALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIGDQTDP 526 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIGFIYK 474 D+ DA RV + + E + + + GF + Sbjct: 527 TRYVTADNRQQLSDA----MGRVERRHSNVNQHDVVENALRDLAEGQSPAGFQVQ 577 >gi|238752349|ref|ZP_04613827.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia rohdei ATCC 43380] gi|238709390|gb|EEQ01630.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia rohdei ATCC 43380] Length = 486 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 101/288 (35%), Gaps = 12/288 (4%) Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVT 197 + + L G S + + ++ +L++ Q+ Sbjct: 203 SAGNNLPLAGTEGQEDAHINMPLFSADPRQNAVIIRDRQANMPLYSSLISQLDQRPVQIE 262 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 + VTI +V + Q+G S + S G SF D + D +F Sbjct: 263 ISVTIIDVDAGDISQLGIDWSASTSIGGMGISFNRGL----AKGNSDGFSTVIGDTGNFM 318 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 L+AL++ + R L+ P++ ++ A K + + G +L Sbjct: 319 VRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL--QGDKVAKLESVTSGSLLR 376 Query: 318 FTPTVLS-PGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGL 373 TP ++ G + + + + V+ + +P + T L G +++L G Sbjct: 377 VTPRMIDADGVKEVLLNLNIQDGQQQVSLISSEPLPQIQNSDISTQATLRVGQSLLLGGF 436 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 ++D + + IPLL IP+LG LFR++ V Sbjct: 437 IQDKQIESQNKIPLLGDIPLLGGLFRSTEKQSHSVVRLFLIKAVPVDA 484 >gi|294055173|ref|YP_003548831.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] gi|293614506|gb|ADE54661.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] Length = 709 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 105/267 (39%), Gaps = 21/267 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K++++ ++I QV ++V I EV + G + P + G V Sbjct: 394 KELIDKIDIPLP-QVRIEVIITEVTLTENQASGLSSFAATFNDRPDITNLPVQGTGPVGL 452 Query: 242 GG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----Y 295 G +F++ + F+ VL E ++ L+ P++ + Sbjct: 453 GLDNFNISSQIGDFAISAVLDLAEDDDNVKILSTPSIVVSHNEEGKINVSQSRPIETGTT 512 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-------------EPVIG 342 +S T + D G+ L TP + + G + + I+ V E Sbjct: 513 TNTTSETVTNQIEYRDVGIQLTVTPLIGADGSVTMTIEQTVDTIFSESSTTNTGDEDGTT 572 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + P VR+A++T+ + I+L GL ++ + + P++ ++P++G L + Sbjct: 573 SSVDTNPVIGVREANSTITVNDREVIILGGLQENQREVSRTYFPIIGRMPLIGDLLSGKQ 632 Query: 403 FNREETEIFIAATPFLVK-PVAMRDLS 428 TE+ I P +++ P A +L+ Sbjct: 633 IEYNRTELIIFVRPTILRNPQAATELT 659 >gi|83858602|ref|ZP_00952124.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633] gi|83853425|gb|EAP91277.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633] Length = 658 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 101/244 (41%), Gaps = 12/244 (4%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV+++ I V + G S FA + G S FS + Sbjct: 399 RAQVSIEAAIISVSLQDEFRFGVNWGA-APSEQIDVRFADNADGTAASVFPGFSATYL-- 455 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSSTGAT 305 E L+ L+ T I ++ P + A+ Q A G Q T + Sbjct: 456 NTDIEATLNMLDAVTEIEVISRPNVMALHNQQAELQVGDQVPVITQSAVSVTNPDAPIVN 515 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPS 364 D GV+L TP V + G + + I EVS V + D P+ R R+ +T+ +PS Sbjct: 516 QTAYRDTGVILSVTPHVRAGGIVEIDITQEVSSVVQTSSSGIDSPTIRQRRITSTLLVPS 575 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVA 423 G ++ L GL+ + G+P+L ++P++G +F + + + TE+ I P ++ P Sbjct: 576 GQSVALGGLIATTRTTNERGVPVLRELPVVGRVFGSDSESVDRTELVILLKPTVITDPSQ 635 Query: 424 MRDL 427 D+ Sbjct: 636 PSDV 639 >gi|283781428|ref|YP_003372183.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283439881|gb|ADB18323.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 1314 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 102/275 (37%), Gaps = 45/275 (16%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------ 244 V ++V IAEV ++Q+G + I S + F V+ G + Sbjct: 811 RRPPMVIIQVMIAEVLLSDVEQLGVELGIQDSLLFDRGIGSVGFPFNNVALGNNSDATSL 870 Query: 245 -------------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + S ++ AL+++ ++ ++ P + Sbjct: 871 ATRESVAGQGLSSFGVGRTDPTLGYGGLVLSASSESVSVLVRALQQSRRLQVISRPQVQT 930 Query: 280 ISGQSASFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + Q A G + T S + + + G++L TP G I + I E Sbjct: 931 LDNQPAFVQVGARVPRITSSQLTVNGTINNTVLENVGIILGVTPRTAPDGMIVMEIDAEK 990 Query: 337 SEPVIGVNAGDM-----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 SE + P R+ A TTV SG T+++ GL+ + Q+ + Sbjct: 991 SELGPEAEGIPISINSNGDVIRSPQIRIATAQTTVSARSGQTVIIGGLITKNQQESTRRV 1050 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 P L IP+LG LFR + E E+ I TPF+++ Sbjct: 1051 PYLGDIPVLGRLFRFDSVSDERRELLIILTPFIMQ 1085 >gi|329901079|ref|ZP_08272701.1| Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium IMCC9480] gi|327549244|gb|EGF33826.1| Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium IMCC9480] Length = 432 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 89/227 (39%), Gaps = 4/227 (1%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q+ ++ I ++ R L Q+G + T S + + + K S S + + Sbjct: 67 PQQIEIEALIVDIDRSQLNQLGAEWGFTAGSVSATFNGMST-DSKGASLPISGSTLLIKN 125 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +F L+A+E R LA+ T++ + +A V + + Sbjct: 126 AANFYAKLNAMENKGDARILAKQTISTLENIAAVLDLSQSRYLPLV--GERVVDLANVNV 183 Query: 313 GVVLHFTPTVLSPGRIG-LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G +L TP ++ G + +R+ + + +A + T + T+++ Sbjct: 184 GTMLKVTPRIVREGPLTRVRLDINIEDGAFSADAASSTNVTRSTITTQAIIEPQHTLLIG 243 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 G + Q ++ IP+L IP+ G LF+N+ + E TP + Sbjct: 244 GYHSEAKTQSRQKIPVLGDIPVFGGLFQNNSDSVNNRERLFLITPRI 290 >gi|254443244|ref|ZP_05056720.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] gi|198257552|gb|EDY81860.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] Length = 582 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 74/498 (14%), Positives = 163/498 (32%), Gaps = 97/498 (19%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 A+ + ++ D + L+ ++ V +++ AD+ Sbjct: 66 PQAEEEVAQGEEQNGVSSLDDAFASPLGQEMTLDASDLISVDYPNEEIRTVLRNVADLYS 125 Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI--------------------------- 114 + + + +G ++ L +Q+ ++ + Sbjct: 126 LN---LVVPDTLIGTTSIKLRDVTWRQIYSVVLDPVGYTFIEEGSIIKIVSRDALNIEPP 182 Query: 115 ------LIERDIAHLEMTLRRFIADSN---IRVEMVSDTVVLHGMVRTIQDSQRAVE--- 162 + + + TLR + S ++V+ S+ +++ ++D ++ VE Sbjct: 183 ITEIFMVNYAEADSIASTLRNLVDSSKGGAVQVDTRSNALIVSERASKMEDIRQVVERLD 242 Query: 163 -------LSETFLSQSGRNQYANSSSKKVMNLLNI--------------AGEDQ------ 195 + F+ + + + + + Q Sbjct: 243 KPTQQVFIETRFIEVTNTDVKNIGVNWSTLRNYGVSVGNINKQWGDSFQRQRSQGSNEDK 302 Query: 196 ---VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--------------KF 238 ++ E L+ +G ++ I ++ A G Sbjct: 303 NASTNVEGVTFEGSDSSLEGVGVRNGILRNNLTGETIIDATSVGESTLISSAVKDLYSLV 362 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + G + S V F VL AL+ R ++ PT+ ++ Q A + G Q Sbjct: 363 DTSGLNRSSSAVFTADQFGFVLSALKEQGGSRLVSNPTVVTLNNQEAMISVGEQFPIPNY 422 Query: 299 SSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----GVNAGDM 348 + + D G++L TP+V G I +++ EVS G + Sbjct: 423 QYNEETGGFEVSGFEFKDIGIILKVTPSVNHTGLITMKVVPEVSSRTGERSFGGAGNASI 482 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R+ +T + L G T+ + GL++ + K +P+L K+P LG LF++ + + Sbjct: 483 PIISTRRTETRIALKDGFTMGIGGLMESTGTEDKNHVPVLGKVPGLGRLFKHESKSETKR 542 Query: 409 EIFIAATPFLVKPVAMRD 426 + I T ++ P D Sbjct: 543 NLLIFITARIL-PSEEAD 559 >gi|212711709|ref|ZP_03319837.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM 30120] gi|212685811|gb|EEB45339.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM 30120] Length = 567 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 61/351 (17%), Positives = 111/351 (31%), Gaps = 31/351 (8%) Query: 82 HSPRTMYLFGKN---VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFI--ADS 134 + RT L G++ G VI L + G + + + + + Sbjct: 197 VTDRTYSLRGQSVTVPGMLTVISDLFKNGGGSVEEALNVEPIKLNTSGDDIDALMDTPIG 256 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 +V G S A S + + + G V NL N Sbjct: 257 GGSPVENRQLIVKRGNASNSAFSLVAHPDSNSLIVK-GSQSQIRYVRDLVKNLDN--RRR 313 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L + I ++ R L +G + +G F+ + D Sbjct: 314 QVELSLWIIDITRSELDNLGVNWEVGSFKAGGG--------------SISFNRSTLPDSS 359 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + + ++ P L A F + K ++ YG Sbjct: 360 KFLVQIDALSKNGNSQIVSRPVLLTQENVPALFDNNTSFYAKL--QGERIATLEQVTYGT 417 Query: 315 VLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 ++ P + + + + E N +PS +T + +++ Sbjct: 418 MISVMPRISGGQSVEMEVNIEDGAESRDSSGKTSNVEGLPSVNRTSINTVARIAKDSSLL 477 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G +D + IPLL IP +G LFR+S N+++ P L+ Sbjct: 478 IGGYTRDQYIDNESKIPLLGDIPWIGGLFRHSSTNQQKMVRLFLIQPRLLD 528 >gi|160872504|ref|ZP_02062636.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli] gi|159121303|gb|EDP46641.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli] Length = 442 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 111/288 (38%), Gaps = 29/288 (10%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIA 203 +L T+ +Q V L+ S + + ++++L+ + Q+ ++ + Sbjct: 148 LLKDKANTLLSAQAIVN--ADNLTNSLWIKDSPVQMNRIIHLIKKLDKPIGQILIEARVV 205 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAAD----------------------FGGKFVSE 241 + ++ K++G Q +++ + Sbjct: 206 SIDQNKEKELGAQFNLSRMRPVNDLLKSTLRNEVSNQNTHLLQHLTMDLPLFSANSLGLA 265 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + + + L ALE+ A ++ P L Q A +G + Y+ +S Sbjct: 266 SLGLRLLNLGKNSFLDLELSALEKEGAAEVISTPHLITADQQPAFIEAGDEIPYQEKASG 325 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 G + + + L TP ++ RI L + EV++ D P+ + R T + Sbjct: 326 GGTSLI-FKKAVLSLKVTPQIMPQERIILDL--EVNQDQPNSVMVDAPTIKARGIKTQII 382 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + SG TIVL G+ + +L++ +P L +P++G LFR ++ +E Sbjct: 383 VKSGETIVLGGVYEYSQGKLEQRVPFLGSLPLIGRLFRLTKVYNRRSE 430 >gi|310766437|gb|ADP11387.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcC protein [Erwinia sp. Ejp617] Length = 676 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 68/475 (14%), Positives = 138/475 (29%), Gaps = 40/475 (8%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73 L + + + V+ + G + + + + D + V+ Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELVKRFSEQREKKEDRRKVMTFPL 183 Query: 74 --PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRR 129 + AD +H + G A ++ L+ + ++ + Sbjct: 184 RYASVADRTIHYRDQTVVI---PGVATMLNELMNGKRAAPASASGSDSAPGGPDTTSMMQ 240 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 R+ + + G + D + +S + + + + + L+ Sbjct: 241 NTQTLLSRLSSRNKSANKAGGRDSDID-DVSGRISADVRNNALLIRDDDKRRDEYSQLIA 299 Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 Q V + I ++ R L ++ T S + G FVS Sbjct: 300 KIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS------- 352 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 D F + ALE +A P++ + Q A + Sbjct: 353 ----DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 406 Query: 308 TTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365 G L TP + G +++ ++ + + N + R T + Sbjct: 407 QPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALISEN 466 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL G ++ IPLL IP +G LF + R + + TP L+ Sbjct: 467 RALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIGDQTDP 526 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIGFIYK 474 D+ DA RV + + E + + + GF + Sbjct: 527 TRYVTADNRQQLSDA----MGRVERRHSNVNQHDVVENALRDLAEGQSPAGFQVQ 577 >gi|71906532|ref|YP_284119.1| type II and III secretion system secretin [Dechloromonas aromatica RCB] gi|71846153|gb|AAZ45649.1| type II and III secretion system protein:Secretin, N-terminal:Secretin/TonB, short N-terminal [Dechloromonas aromatica RCB] Length = 585 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 92/292 (31%), Gaps = 53/292 (18%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228 + + + E QV L+ I EV + Q G S G + Sbjct: 264 DEYLKATQLVVERQVMLEAKIIEVSLNDSYQTGINWSKFGGIANRFSLGIAAPSATLAGS 323 Query: 229 -----------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 + G G +F +L LE ++ Sbjct: 324 GVISGSAAGVSGGTAVAAVPGSGGAMATGPTGRGFFGLTFQSNNFAALLSFLEGQGDVQV 383 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-------------GATSVTTHDYGVVLHF 318 L+ P + + Q A G + T S+ ++ G+ L Sbjct: 384 LSSPRIATTNNQKAVLKVGTDDYFVTGISTNVTTGTGTGGNVVTPNITLQPFFSGISLDV 443 Query: 319 TPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 TP + G I L + VS +G + S + ++D+ V + G + Sbjct: 444 TPQIDDEGNIILHVHPSVSVVEEKSKSVNLGDLGTYTLPLASSTINESDSIVRVQDGSIV 503 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + GL+ + + G+P +S +P LG LF + + E+ I +++ Sbjct: 504 AIGGLMSQEQNTNRYGLPGISGVPGLGLLFGQKSVSNRKRELVILMKSTVIR 555 >gi|146343151|ref|YP_001208199.1| general secretion pathway protein D [Bradyrhizobium sp. ORS278] gi|146195957|emb|CAL79984.1| General secretion pathway protein D [Bradyrhizobium sp. ORS278] Length = 768 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 21/247 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-------V 247 QV + TIAEV G Q ++ G + + S + + Sbjct: 488 QVGIDATIAEVTLTNELSYGVQAYLSSKVLGLGTDRGSITNTQTTSVATATTAAATTALI 547 Query: 248 KGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 L F+F +L AL T+++ L+ P+L I+ Q+A+ G T S Sbjct: 548 NRALPGFNFLIGHEASPNMILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGS 607 Query: 300 ------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 S+T ++ + G++L P + + G + L ++ E+S A P+ Sbjct: 608 ATVLSSSNTVVNTIDYRNTGIILRVVPRIAANGNVRLEVEQEISNVAAQTAASLTPTVSQ 667 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 RK + + + +G T++LAGL+ + + GIP +IPILG F + TE+ I Sbjct: 668 RKVKSAISVANGQTVLLAGLISEQQTGNRNGIPGFDEIPILGDTFSHQDKKGTRTELIIF 727 Query: 414 ATPFLVK 420 P +++ Sbjct: 728 IRPQIIR 734 >gi|47420041|gb|AAT27370.1| pIV [VCSM13 interference-resistant helper phage] Length = 426 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 38/355 (10%) Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152 N ++G + + + + I L + + V +D V + Sbjct: 80 NFDMVGSNPSIIQKYNPNNQDYIDELPSSDNQEYDDNSAPSGGFFV-PQNDNVTQTFKIN 138 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194 ++ + E F+ + S NLL ++ D Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSAPKDILDNLPQFLSTVDLPTD 196 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ ++ I EV++ F + + S GG F G+ + Sbjct: 197 QILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307 + AL+ + + L+ P + +SGQ S + G + T + ++ Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTI 312 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + G+ + P ++ G I L I ++ A D+ R TTV L G T Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 ++L GL G+P LSKIP++G LF + + EE+ +++ +V+ + Sbjct: 372 LLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|153902280|dbj|BAF74221.1| protein IV [Enterobacteria phage f1] Length = 426 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 38/355 (10%) Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152 N ++G + + + + I L + + V +D V + Sbjct: 80 NFDMVGSNPSIIQKYNPNNQDYIDELPSSDNQAYDDNSAPSGGFFV-PQNDNVTQTFKIN 138 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194 ++ + E F+ + S NLL ++ D Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSAPKDILDNLPQFLSTVDLPTD 196 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ ++ I EV++ F + + S GG F G+ + Sbjct: 197 QILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307 + AL+ + + L+ P + +SGQ S + G + T + ++ Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTI 312 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + G+ + P ++ G I L I ++ A D+ R TTV L G T Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 ++L GL G+P LSKIP++G LF + + EE+ +++ +V+ + Sbjct: 372 LLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|94968501|ref|YP_590549.1| type II and III secretion system protein [Candidatus Koribacter versatilis Ellin345] gi|94550551|gb|ABF40475.1| type II and III secretion system protein [Candidatus Koribacter versatilis Ellin345] Length = 808 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 147/476 (30%), Gaps = 71/476 (14%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ------- 67 + S + I + + +++ + Sbjct: 333 AVRSLEAASVMATTIAKDKVDNVLPPTASEAPAGAVNLAQEQQTQQHSAQPASGPRYTGE 392 Query: 68 --DVLVSDPTKAD----VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 V + D D + S + L G ++L Q L++ + Sbjct: 393 PISVNLKDVDLKDFFRLIHEISGLNVVLDPSVKGTVTLVLDDVPWDQALDIVLRNNGLDR 452 Query: 122 HLEMTLRRFIADSNIRVEMVS------------DTVVLHGMVRTIQDSQRAVELSETFLS 169 L+ + R + +R E V+ D V + + + + L + + Sbjct: 453 QLDGNVLRIASIETLRTEAVARRQQLEAQALAVDKVTVTRFLSYARSADLVPTLKKFLSA 512 Query: 170 QSGRNQYANSSS-------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + ++ ++++ L+ +V ++ + R ++++G Q Sbjct: 513 RGDIIADGRMNALVISDIPGVIPSLDRLISQLD-RKTQEVEIEARVVAATRTFVRELGIQ 571 Query: 217 HSITGSSSGPSKSFAADFGGKFVS--------------------------------EGGD 244 + S S + G + Sbjct: 572 LGGGWGGASTSVSGNPNAGFGSTNFKNPAGQPITGAPFPISTTGAFPLFTNFQVLNPTAG 631 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + + + L A E+ ++ L+ P + + +A G + T+S G Sbjct: 632 LELINIGHSYGLDLYLSAAEQRGLLKILSRPRVVTQNNVTALVRQGFRLPVVTLSQLNGP 691 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 +VT D + L TP + I L + E + P P ++ T V + Sbjct: 692 PTVTYVDAFLRLTVTPQITVENTIFLAVDVENTTPDFTRTVLGNPILLTQQTTTQVLVTD 751 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GGT+ + G+++ + +P+L IPIL LF + N + E+ TP +V+ Sbjct: 752 GGTVTIGGVVQTQNTLTSQEVPILGDIPILKYLFMHKTTNTQTQELIFFITPKIVQ 807 >gi|27550050|gb|AAO18033.1| LscC [Photorhabdus luminescens] Length = 621 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 52/356 (14%), Positives = 116/356 (32%), Gaps = 30/356 (8%) Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDIL---IERDIAHLEMTLRRFIADSNIRVEMV 141 + L + G V + +++ I + + L R ++D+N+ Sbjct: 179 QQSLLRSEKTGALTVEIFPLKYASVVDRKIQYRDTSIEAPGVATILSRLLSDTNVT---- 234 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGR--NQYANSSSKKVMNLLNIAGEDQVTLK 199 + G + + + +L+N+ + ++ Sbjct: 235 ----TVTGEASSSTGGSYSSRAVVQAEPSLNAIIVRDNPERMPMYAHLINVLDKPSARIE 290 Query: 200 V--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---------FVSEGGDFSVK 248 V +I ++ + L ++G + ++ G+ + S+ Sbjct: 291 VALSIVDIDANNLSELGVDWQVGINTGPRHIIDITTSAGEKKEGKEKGESIGSAALGSLV 350 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + LE + + ++ PTL A + + K + + Sbjct: 351 DRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQAVIDNNETYYVKV--NGERVAELK 408 Query: 309 THDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPS 364 + YG +L P V+ G I L + E + +P+ DT + Sbjct: 409 SLTYGTMLRMIPRVIQVGDSPEISLDLHIEDGNQKPNSSGRDGIPTISRTVVDTVARVGH 468 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G ++++ G+ +D++ Q+ +P L IP LG LFRN+ + P L+ Sbjct: 469 GQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNTSEQVRRSVRLFIIEPRLID 524 >gi|138047|sp|P03664|G4P_BPFD RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|8489183|gb|AAF75602.1|AF217317_5 morphogenetic protein IV [Filamentous phage cloning vector fd-tet] gi|215404|gb|AAA32312.1| IV [Enterobacteria phage fd] gi|8698959|gb|AAF78531.1| protein IV [Filamentous phage display vector fMCS1] gi|21667075|gb|AAM73892.1| morphogenetic protein IV [Filamentous phage display vector f8-5] gi|21667089|gb|AAM73904.1| morphogenetic protein IV [Filamentous phage display vector c8-4] gi|223541|prf||0812197E DNA,phage Length = 426 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 64/339 (18%), Positives = 120/339 (35%), Gaps = 33/339 (9%) Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + D + E + ++ V +D V + ++ + E F+ Sbjct: 96 PNSQDYIDELPSSDIQEYDDNSAPSGGFFV-PQNDNVTQTFKINNVRAKDLI-RVVELFV 153 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDIL 210 + S NLL ++ DQ+ ++ I EV++ Sbjct: 154 KSNTSKSSNVLSVDG-SNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA 212 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 F + + S GG F G+ + + AL+ + + Sbjct: 213 LDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGDVLGLSVRALKTNSHSK 268 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVL 323 L+ P + +SGQ S + G + T + +V + G+ + P + Sbjct: 269 ILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTVERQNVGISMSVFPVAM 328 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + G I L I ++ A D+ R TTV L G T++L GL Sbjct: 329 AGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDS 387 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G+P LSKIP++G LF + + EE+ +++ +V+ + Sbjct: 388 GVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|166211|gb|AAA32218.1| protein IV [Enterobacteria phage f1] gi|58091841|gb|AAW65343.1| gene IV protein [synthetic construct] gi|58091857|gb|AAW65354.1| gene IV protein [synthetic construct] gi|153902269|dbj|BAF74211.1| protein IV [Enterobacteria phage f1] gi|262064184|gb|ACY07165.1| IV [Enterobacteria phage f1] Length = 426 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 38/355 (10%) Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152 N ++G + + + + I L + + V +D V + Sbjct: 80 NFDMVGSNPSIIQKYNPNNQDYIDELPSSDNQEYDDNSAPSGGFFV-PQNDNVTQTFKIN 138 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194 ++ + E F+ + S NLL ++ D Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSAPKDILDNLPQFLSTVDLPTD 196 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ ++ I EV++ F + + S GG F G+ + Sbjct: 197 QILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307 + AL+ + + L+ P + +SGQ S + G + T + ++ Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTI 312 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + G+ + P ++ G I L I ++ A D+ R TTV L G T Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 ++L GL G+P LSKIP++G LF + + EE+ +++ +V+ + Sbjct: 372 LLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|297171846|gb|ADI22835.1| type II secretory pathway, component PulD [uncultured nuHF2 cluster bacterium HF0500_31B05] Length = 815 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 115/287 (40%), Gaps = 27/287 (9%) Query: 174 NQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 ++ + +K++N+L+ + Q+ ++ + EV + L+ IG + + + + S Sbjct: 254 DKNEPEALEKLINVLHTQIDVPAQQIFIEALVIEVNTNRLRDIGVELTGSKNHVQGSFER 313 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + FS + D S + L AL L+ P++ ++ + A G Sbjct: 314 SEGNPLT----TLLFSRESFTDFLSLKGKLEALVEIGDAEILSSPSVLVLNDRQARVQVG 369 Query: 291 GQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA- 345 Q ++ T + G+VL+ P + ++ ++I+T +S Sbjct: 370 RQIPIVRSTTPTAGTTVKGIEYFPIGIVLNLRPRINLDQSQVTIQIETIISSISTESATK 429 Query: 346 ---------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P R +T V + G ++ GLL + + K G+P LS +P LG Sbjct: 430 LEDGVSEDISFAPIVDNRLVETYVRVADGTPFIIGGLLSTERLESKVGVPFLSAVPFLGH 489 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 LF R + E+ + TP +V P+ R+ S Y + D+ F Sbjct: 490 LFSRKRVENTQREVIVVITPHIV-PLETRNFS-----YLIPKDSDLF 530 >gi|89111142|dbj|BAE80232.1| HrcC [Acidovorax avenae subsp. avenae] Length = 683 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 52/295 (17%), Positives = 112/295 (37%), Gaps = 18/295 (6%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQ-------YANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 T + +A E F + G N + + +++ L+ V L+ TI E Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMAEYESLIHRLD-QKPQLVELEATIIE 456 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V D + +G S+ +S + + S S + ++ALE Sbjct: 457 VNSDSVDALGVNWSLRAGTSSIATNL------PGPSTPAALSTIVLDAGRHLLANVNALE 510 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 R L++P++ ++ ++A + + + ++ + G +L TP V + Sbjct: 511 AQGKARILSKPSVLGVANRAAVM--REKRVATVRVAGNLEANLFQIEAGTLLQMTPQVTA 568 Query: 325 -PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G+ +++ + + N +P + + T + G ++++ G+ + Sbjct: 569 VEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQD 628 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +P LSK+P++G +FRN+ TE TP ++ A +S Sbjct: 629 NAVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683 >gi|238764026|ref|ZP_04624981.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia kristensenii ATCC 33638] gi|238697697|gb|EEP90459.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia kristensenii ATCC 33638] Length = 481 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 10/228 (4%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 Q+ + VTI +V + Q+G S + S G SF + + + Sbjct: 252 RPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSGE----PQNSANGFSTVIG 307 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D +F L+AL++ + R L+ P++ ++ A K + + Sbjct: 308 DSGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL--QGDKVAKLESIT 365 Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367 G +L TP ++ + L + + + +++ + +P + T L G + Sbjct: 366 SGSLLRVTPRMIDADGVKEVLLNLNIQDGQQQASISSSEPLPEIQNSDISTQATLRVGQS 425 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++L G ++D + + IPLL IP+LG LFRN+ Sbjct: 426 LLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRNTNKQSHSVVRLFLIK 473 >gi|170766764|ref|ZP_02901217.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia albertii TW07627] gi|170124202|gb|EDS93133.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia albertii TW07627] gi|315617521|gb|EFU98127.1| conserved hypothetical protein [Escherichia coli 3431] Length = 512 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 102/247 (41%), Gaps = 23/247 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + + Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------AAQANISSSVISNA 327 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F ++AL++ + + L++P++ ++ A K S S+ + G Sbjct: 328 NNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385 Query: 314 VVLHFTPTVLSP----------GRIGL-----RIQTEVSEPVIGVNAGDMPSYRVRKADT 358 +L TP +L R+ L S+ I +P + + T Sbjct: 386 TLLRVTPRILDDTPNSLTGKRRERVRLLLDIQDGNQSTSQSNIQDTGSLLPEVQNSEMTT 445 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505 Query: 419 VKPVAMR 425 +K + Sbjct: 506 IKSASSE 512 >gi|27381133|ref|NP_772662.1| general secretion pathway protein D [Bradyrhizobium japonicum USDA 110] gi|27354300|dbj|BAC51287.1| blr6022 [Bradyrhizobium japonicum USDA 110] Length = 793 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 123/331 (37%), Gaps = 34/331 (10%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R NQ + ++ + ++ + Q+ ++ TIAEV + G Q Sbjct: 471 RITADVTNNAVLVYANQESQRIVEQTIRQID-RPQRQIAIEATIAEVTLNDQLNYGVQFF 529 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGG-------------------DFSVKGVLDRFSFETV 259 + S + + + + S V Sbjct: 530 LASQKGSISNTISGVSNSATIGSNTEPASNAVNAAAGALLGRALPGFNFLIGAENSPRVV 589 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYG 313 L AL T ++ L+ P+L + Q+A+ G Q + T +++ T ++ + G Sbjct: 590 LDALHGITNVKVLSNPSLVVLDNQAATLQVGDQVPFSTGTATVLTANNTVVNTIDYKNTG 649 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 ++L P + G + L I+ E+S G P+ R+ +++ + SG T++LAGL Sbjct: 650 IILRVLPRANANGNVVLDIEQEISSVAAGSANSLTPTISQRRVKSSIAVTSGQTVLLAGL 709 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 + + + ++G+P+L IP +G F + R TE+ + P ++K D Sbjct: 710 ISETENRQRQGLPILDSIPGMGDAFSHQTTARARTELILFIRPTVIKDGV--------DA 761 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 + + ++ + R+ P Sbjct: 762 HVIAEEMRTKMNGRLVGTSNPVVTVSPPKAA 792 >gi|89111175|dbj|BAE80264.1| HrcC [Acidovorax avenae subsp. avenae] Length = 683 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 110/294 (37%), Gaps = 16/294 (5%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN--IAGEDQ----VTLKVTIAEV 205 T + +A E F + G N M+ I DQ V L+ TI EV Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEV 457 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 D + +G S+ +S + + S S + ++ALE Sbjct: 458 NSDSVDALGVNWSLRAGTSSIATNL------PGPSTPAALSTIVLDAGRHLLANVNALEA 511 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS- 324 R L++P++ ++ ++A + + + ++ + G +L TP V + Sbjct: 512 QGKARILSKPSVLGVANRAAVM--REKRVATVRVAGNLEANLFQIEAGTLLQMTPQVTAV 569 Query: 325 PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G+ +++ + + N +P + + T + G ++++ G+ + Sbjct: 570 EGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQDN 629 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +P LSK+P++G +FRN+ TE TP ++ A +S Sbjct: 630 AVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683 >gi|332159936|ref|YP_004296513.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607512|emb|CBY29010.1| secretion system apparatus SsaC [Yersinia enterocolitica subsp. palearctica Y11] gi|325664166|gb|ADZ40810.1| Type III secretion outer membrane pore, YscC/HrcC family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 493 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 53/301 (17%), Positives = 107/301 (35%), Gaps = 30/301 (9%) Query: 139 EMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194 + V L G+V +++ + L+ S+ S+ N + I Sbjct: 191 QYRDQQVQLPGLVSVLREMSAGNHLPLAGEKESEDAPVSAPLFSADPRQNAVIIRDRQAN 250 Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 Q+ + VTI +V + Q+G S + S G SF + Sbjct: 251 MPLYSSLITQLDQRPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGVSFNSGE---- 306 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + D + + +F L+AL++ + R L+ P++ ++ A K Sbjct: 307 AAPHSDGFSTVIGNTGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL- 365 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIG-LRIQTEVSEPVIG---VNAGDMPSYRVR 354 + + G +L TP ++ + + + + + ++ +P + Sbjct: 366 -QGDKVAKLESITSGSLLRVTPRMIDSDGVKEVLLNLNIQDGQQQAPLSSSEPLPEIQNS 424 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T L G +++L G ++D + + IPLL IP+LG LFR++ Sbjct: 425 DISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTNKQSHSVVRLFLI 484 Query: 415 T 415 Sbjct: 485 K 485 >gi|326315361|ref|YP_004233033.1| type III secretion outer membrane pore, YscC/HrcC family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372197|gb|ADX44466.1| type III secretion outer membrane pore, YscC/HrcC family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 683 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 110/294 (37%), Gaps = 16/294 (5%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN--IAGEDQ----VTLKVTIAEV 205 T + +A E F + G N M+ I DQ V L+ TI EV Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEV 457 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 D + +G S+ +S + + S S + ++ALE Sbjct: 458 NSDSVDALGVNWSLRAGTSSIATNL------PGPSTPAALSTIVLDAGRHLLANVNALEA 511 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS- 324 R L++P++ ++ ++A + + + ++ + G +L TP V + Sbjct: 512 QGKARILSKPSVLGVANRAAVM--REKRVATVRVAGNLEANLFQIEAGTLLQMTPQVTAV 569 Query: 325 PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G+ +++ + + N +P + + T + G ++++ G+ + Sbjct: 570 EGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQDN 629 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +P LSK+P++G +FRN+ TE TP ++ A +S Sbjct: 630 AVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683 >gi|46562147|ref|YP_009152.1| type III secretion system protein YscC family [Desulfovibrio vulgaris str. Hildenborough] gi|46447684|gb|AAS94350.1| type III secretion system protein, YscC family [Desulfovibrio vulgaris str. Hildenborough] Length = 624 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 62/413 (15%), Positives = 125/413 (30%), Gaps = 55/413 (13%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV-LHGM-------- 150 D + +A + + S RV + TV L G Sbjct: 169 YAWAEDITVNSMDKTVTLPGVASILRAMVSGSPSSATRVTQETATVDKLSGTGLISQGRQ 228 Query: 151 ---VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----------------- 190 +QR + S+ + Q + + +N + + Sbjct: 229 QKESGQSNQAQRGGQASQQDSGGAQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDL 288 Query: 191 -AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSFAADFGGKF 238 + V + I ++ + + +G + T S+G K G Sbjct: 289 DRPVELVEIHAAIVDIDTNFKRDLGVTYQATVGKDQRWAGGADVSTGTDKFTPLPVPGVP 348 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G S + F ++ALE+ R L P++ + A+ + + + Sbjct: 349 QGSGLTLSTIYTMGSDYFLARINALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQV- 407 Query: 299 SSSTGATSVTTHDYGVVLHFTPT--VLSPGRIGLRIQTEVSEPVIGVNA-------GDMP 349 A + + G VL TP G +++ V + +P Sbjct: 408 -QGYQAVDLFKVEAGTVLRVTPHIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIP 466 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + K +T + +G ++++ G + +G+P+L IP+LG LF+ + E Sbjct: 467 PIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRME 526 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 I TP +V+ + +L + + + S G Sbjct: 527 RLILITPKVVR---LDNLPGTPPRVDDPAFHRTATQSDYAERTPTPPPSRRSG 576 >gi|17426227|ref|NP_510894.1| phage assembly protein [Enterobacteria phage M13] gi|138050|sp|P03665|G4P_BPM13 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|14969|emb|CAA23865.1| phage assembly protein [Enterobacteria phage M13] Length = 426 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 12/237 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 DQ+ ++ I EV++ F + + S GG F G+ + Sbjct: 195 TDQILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFN 250 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGAT 305 + AL+ + + L+ P + +SGQ S + G + T + Sbjct: 251 GDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQ 310 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 ++ + G+ + P ++ G I L I ++ A D+ R TTV L G Sbjct: 311 TIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDG 369 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 T++L GL G+P LSKIP++G LF + + EE+ +++ +V+ + Sbjct: 370 QTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|313891897|ref|ZP_07825499.1| bacterial type II/III secretion system short domain protein [Dialister microaerophilus UPII 345-E] gi|313119672|gb|EFR42862.1| bacterial type II/III secretion system short domain protein [Dialister microaerophilus UPII 345-E] Length = 405 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 98/254 (38%), Gaps = 15/254 (5%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + T A S + ++ L+I E QV ++ + V R K +G Sbjct: 133 QVASDVGTNSVIVNATPRAMSELEHIIKALDIP-EKQVKVEAEVLAVNRSYAKDLGIDWQ 191 Query: 219 IT-----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 S +K+ + S+ G F F+ L+AL Sbjct: 192 FKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAGISYGKSITGNPYTFFFQAKLNALLSDG 251 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSP 325 + LA+P + ++G++A G + + T TS+ D G+ L +TP V Sbjct: 252 KAKILAKPNVVTLNGRTAEILIGSKIPVLVEHMENGTKTTSIEYKDAGIKLTYTPNVSKN 311 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I I EVS P + V R+A TTV L SG + + GL+ + + Sbjct: 312 SEITADIIAEVSTPYL-VPEMKAYRIVTRQAHTTVRLKSGDMLTIGGLIDKEEANNIRKV 370 Query: 386 PLLSKIPILGALFR 399 P+L IPILG LF+ Sbjct: 371 PVLGDIPILGKLFQ 384 >gi|120586851|ref|YP_961196.1| YscC/HrcC family type III secretion outer membrane protein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564265|gb|ABM30008.1| type III secretion outer membrane pore, YscC/HrcC family [Desulfovibrio vulgaris DP4] Length = 624 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 62/413 (15%), Positives = 125/413 (30%), Gaps = 55/413 (13%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV-LHGM-------- 150 D + +A + + S RV + TV L G Sbjct: 169 YAWAEDITVNSMDKTVTLPGVASILRAMVSGSPSSATRVTQETATVDKLSGTGLISQGRQ 228 Query: 151 ---VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----------------- 190 +QR + S+ + Q + + +N + + Sbjct: 229 QKESGQSNQAQRGGQASQQDSGGAQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDL 288 Query: 191 -AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSFAADFGGKF 238 + V + I ++ + + +G + T S+G K G Sbjct: 289 DRPVELVEIHAAIVDIDTNFKRDLGVTYQGTVGKDQRWAGGADVSTGTDKFTPLPVPGVP 348 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G S + F ++ALE+ R L P++ + A+ + + + Sbjct: 349 QGSGLTLSTIYTMGSDYFLARINALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQV- 407 Query: 299 SSSTGATSVTTHDYGVVLHFTPT--VLSPGRIGLRIQTEVSEPVIGVNA-------GDMP 349 A + + G VL TP G +++ V + +P Sbjct: 408 -QGYQAVDLFKVEAGTVLRVTPHIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIP 466 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + K +T + +G ++++ G + +G+P+L IP+LG LF+ + E Sbjct: 467 PIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRME 526 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 I TP +V+ + +L + + + S G Sbjct: 527 RLILITPKVVR---LDNLPGTPPRVDDPAFHRTATQSDYAERTPTPPPSRRSG 576 >gi|261257910|ref|ZP_05950443.1| w0022 [Escherichia coli O157:H7 str. FRIK966] Length = 275 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 7/189 (3%) Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + + ++ +L AL ++ LA P++ + A+F G + + Sbjct: 23 NALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSG 82 Query: 299 SSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSY 351 S +T +V G+ L P + + L I+ EVS + + ++ Sbjct: 83 SQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATF 142 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R + + +G T+V+ GLL I+ + +PLL IP+LG LFR + + Sbjct: 143 NTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAKSEQTAKRNLM 202 Query: 412 IAATPFLVK 420 + P +++ Sbjct: 203 LFIRPTIIR 211 >gi|78777581|ref|YP_393896.1| type II and III secretion system protein [Sulfurimonas denitrificans DSM 1251] gi|78498121|gb|ABB44661.1| type II and III secretion system protein [Sulfurimonas denitrificans DSM 1251] Length = 563 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 92/285 (32%), Gaps = 60/285 (21%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------------- 231 QV + V + V K G S + + +F Sbjct: 239 QVLIDVQLLSVTLSDGKTTGVDWSQLYNLQNMNLTFNKAKRTNVHGATWDSAYEGDTVEG 298 Query: 232 --------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 D G + + F+ ++ L+ + + Sbjct: 299 LLLRDKRVEAAQSNIETYGLEDLAGVRTPVDATSKLLTISSNFTINNIIKFLKTQGDVSS 358 Query: 272 LAEPTLTAISGQSASFTSGGQHLY-----------KTVSSSTGATSVTTHDYGVVLHFTP 320 ++ P + ++ Q A T+G ++ Y S +T + + GV+L TP Sbjct: 359 ISNPKVLTLNNQPALITAGTEYFYKIISDSLSTAGTGGSVTTQNQDLQSVFAGVLLDITP 418 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLL 374 + I L+I +SE ++ P R R+ + V L G I+L GL+ Sbjct: 419 EISDDNMITLKINPSLSETTTDISITPGVERTMPPDLRRRQLSSVVTLRDGERIILGGLI 478 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+L IPIL LF+ + E+ I P +V Sbjct: 479 NTSNSIDVNKVPILGDIPILNYLFKYENRLKTTQELVIVIEPHIV 523 >gi|163786002|ref|ZP_02180450.1| type II general secretion pathway (GSP) D protein [Flavobacteriales bacterium ALC-1] gi|159877862|gb|EDP71918.1| type II general secretion pathway (GSP) D protein [Flavobacteriales bacterium ALC-1] Length = 718 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 83/242 (34%), Gaps = 18/242 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF- 254 + ++V I E + + G + + S ++ + + G Sbjct: 476 ILIEVMIVEAQTSNTLEAGVTWGLGTEPATTEGSLFPTTDVTLGAQTINRIISGFSSTSV 535 Query: 255 --------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------- 299 +F + A+E ++ + P L ++G ASF++G Y V Sbjct: 536 FNFGKVVPNFFATVKAMETNGDLKIKSTPKLATLNGHRASFSNGQTSYYAVVQRNTIGND 595 Query: 300 --SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 +T + D + L P V + L I S + P R Sbjct: 596 NPQTTEIRNYFPVDAKLGLEIKPYVTGNKEVLLNINVVQSNFGQRIAEDAPPDINSRDFS 655 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + V + VL GL ++ G+P L++IP++ LF ++++ + P Sbjct: 656 SVVRMKDQDIAVLGGLEENYSNNSGSGVPFLARIPLIKWLFSKRVREGRKSKLTVFIKPT 715 Query: 418 LV 419 ++ Sbjct: 716 VI 717 >gi|281358092|ref|ZP_06244576.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281315465|gb|EFA99494.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 545 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 11/275 (4%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + L E + A + + +M +++ Q+ ++ I EV Q Sbjct: 124 ATLVEPLDEQNVLVLSGPSDAVENYRSIMLAMDVPSS-QILIEAKIVEVMFSDGMQRNLS 182 Query: 217 HSITGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 S G + G + G + K + + + + L A + L+ P Sbjct: 183 ISYAHKGRGSIGATTEVPGQSSQPTTGMGGNWKPIAGKDTLDIAFQWLLTAQDAKVLSSP 242 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQ 333 + + + +G + + +S+ S++ GV L P++++ + LR+ Sbjct: 243 NILISRNEVSRIVTGEEIPIQEANSTGNTLSLSTKFKSVGVTLEVEPSMINRDNVTLRVY 302 Query: 334 TEVSEP-------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 +VS G + +P R +T + + +++ GL + ++ +P Sbjct: 303 PKVSNVIRYENVSAGGDTSYPVPVISARSVETYLRMQDKQVVMMGGLYSRNDSLSQQRVP 362 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +LS +P++G LF +E T++ ++ P Sbjct: 363 ILSDLPLIGELFTGKNLTKEVTQLIFFLKIHIISP 397 >gi|138046|sp|P03666|G4P_BPF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|14983|emb|CAA23875.1| unnamed protein product [Enterobacteria phage f1] Length = 426 Score = 146 bits (369), Expect = 7e-33, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 12/237 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 DQ+ ++ I EV++ F + + S GG F G+ + Sbjct: 195 TDQILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFN 250 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGAT 305 + AL+ + + L+ P + +SGQ S + G + T + Sbjct: 251 GDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQ 310 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V + G+ + P ++ G I L I ++ A D+ R TTV L G Sbjct: 311 TVERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDG 369 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 T++L GL G+P LSKIP++G LF + + EE+ +++ +V+ + Sbjct: 370 QTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|225166011|ref|ZP_03727761.1| Type II secretory pathway component PulD-like protein [Opitutaceae bacterium TAV2] gi|224799746|gb|EEG18225.1| Type II secretory pathway component PulD-like protein [Opitutaceae bacterium TAV2] Length = 693 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 66/396 (16%), Positives = 129/396 (32%), Gaps = 78/396 (19%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + +E +++F S ++ + +V G Sbjct: 318 NQTVEQFVRDGAPQETGIEQAIKKFFTGSTYMIDYERNIIVATGT--------------- 362 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 + + + ++ + QV ++ + +Q+G ++ Sbjct: 363 ---------RDQLRTLENIIREFD-RPVQQVLIEARFITISEAAFQQLGLNWETNRPTTS 412 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQ 283 + V G + + G+ S L A+E++ +TL+ P LT I+ + Sbjct: 413 ARSATDYTSIATTVGFGLEKTFTGIFGSNSDSLTATLTAIEQSGESQTLSAPRLTVINNR 472 Query: 284 SASFTSGGQHLYKTVSSST-------------GATSVTTHDYGVVLHFTPTVLSPGR-IG 329 A+ G Y + + T GV L ++ GR I Sbjct: 473 PATIRDGKTQYYYEEYQVSQTILENRSTSSLVPSGKPTKLSAGVSLDVLASIGGDGRSIM 532 Query: 330 LRIQTEVSEPVIGVNAGDM-----------------PSYRVRKADTTVELPSGGTIVLAG 372 L ++ VS+ V V + P R ++ T V + SG T+V+ G Sbjct: 533 LALKPSVSQDVELVTFATVSDLDSSGRVVSTFDIKLPQSRDQEISTRVIVQSGETVVMGG 592 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 ++++ E +P+L IP LGALFR + + I T L+ Sbjct: 593 VIENVQSTFTESVPVLGAIPYLGALFRTKTEVSKPRYLLIFVTATLL------------- 639 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 + F R N G +E + ++ +G Sbjct: 640 -----SETGEFV--RYNNAPGTEETPRTQRRSRRGT 668 >gi|215488986|ref|YP_002331417.1| T3SS structure protein EscC [Escherichia coli O127:H6 str. E2348/69] gi|312967940|ref|ZP_07782152.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|54311608|emb|CAG17523.1| EscC protein [Escherichia coli] gi|215267058|emb|CAS11503.1| T3SS structure protein EscC [Escherichia coli O127:H6 str. E2348/69] gi|221361489|emb|CAX18660.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361550|emb|CAX18740.1| Type III secretion system, LEE associated [Escherichia coli] gi|312287501|gb|EFR15409.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|320193805|gb|EFW68438.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli WV_060327] gi|320201526|gb|EFW76105.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli EC4100B] Length = 512 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + + Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F ++AL++ + + L++P++ ++ A K S S+ + G Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385 Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358 +L TP +L L ++ + +P + + T Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505 Query: 419 VKPVAMR 425 +K + Sbjct: 506 IKSASSE 512 >gi|15804236|ref|NP_290275.1| hypothetical protein Z5126 [Escherichia coli O157:H7 EDL933] gi|15833829|ref|NP_312602.1| EscC [Escherichia coli O157:H7 str. Sakai] gi|168748648|ref|ZP_02773670.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4113] gi|168753525|ref|ZP_02778532.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4401] gi|168759822|ref|ZP_02784829.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4501] gi|168766122|ref|ZP_02791129.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4486] gi|168772329|ref|ZP_02797336.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4196] gi|168779857|ref|ZP_02804864.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4076] gi|168785590|ref|ZP_02810597.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC869] gi|168798671|ref|ZP_02823678.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC508] gi|195936258|ref|ZP_03081640.1| EscC [Escherichia coli O157:H7 str. EC4024] gi|208808738|ref|ZP_03251075.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4206] gi|208812386|ref|ZP_03253715.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4045] gi|208819063|ref|ZP_03259383.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4042] gi|209395836|ref|YP_002273173.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4115] gi|217325945|ref|ZP_03442029.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. TW14588] gi|254795650|ref|YP_003080487.1| type III needle complex subunit [Escherichia coli O157:H7 str. TW14359] gi|261225794|ref|ZP_05940075.1| type III needle complex subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261258839|ref|ZP_05951372.1| type III needle complex subunit [Escherichia coli O157:H7 str. FRIK966] gi|291285063|ref|YP_003501881.1| escC [Escherichia coli O55:H7 str. CB9615] gi|12518466|gb|AAG58839.1|AE005596_9 escC [Escherichia coli O157:H7 str. EDL933] gi|3414909|gb|AAC31520.1| L0041 [Escherichia coli] gi|13364050|dbj|BAB37998.1| type III secretion system EscC protein [Escherichia coli O157:H7 str. Sakai] gi|187771452|gb|EDU35296.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4196] gi|188016923|gb|EDU55045.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4113] gi|189002416|gb|EDU71402.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4076] gi|189358814|gb|EDU77233.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4401] gi|189364509|gb|EDU82928.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4486] gi|189369868|gb|EDU88284.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4501] gi|189374516|gb|EDU92932.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC869] gi|189378854|gb|EDU97270.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC508] gi|195957526|gb|ACG59637.1| type III secretion system protein EscC [Escherichia coli O157:H7] gi|195957585|gb|ACG59695.1| type III secretion system protein EscC [Escherichia coli] gi|195957642|gb|ACG59751.1| EscC [Escherichia coli] gi|208728539|gb|EDZ78140.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4206] gi|208733663|gb|EDZ82350.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4045] gi|208739186|gb|EDZ86868.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4042] gi|209157236|gb|ACI34669.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4115] gi|217322166|gb|EEC30590.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. TW14588] gi|254595050|gb|ACT74411.1| type III needle complex subunit [Escherichia coli O157:H7 str. TW14359] gi|255348323|gb|ACU09465.1| type III secretion outer membrane pore YscC/HrcC family [Escherichia coli] gi|290764936|gb|ADD58897.1| escC [Escherichia coli O55:H7 str. CB9615] gi|320191251|gb|EFW65901.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC1212] gi|320639365|gb|EFX08980.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. G5101] gi|320644809|gb|EFX13845.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. 493-89] gi|320650073|gb|EFX18569.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. H 2687] gi|320655420|gb|EFX23355.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661047|gb|EFX28483.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. USDA 5905] gi|320666172|gb|EFX33178.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. LSU-61] gi|326337301|gb|EGD61136.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. 1044] gi|326341675|gb|EGD65464.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. 1125] Length = 512 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + + Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F ++AL++ + + L++P++ ++ A K S S+ + G Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385 Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358 +L TP +L L ++ + +P + + T Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505 Query: 419 VKPVAMR 425 +K + Sbjct: 506 IKSASSE 512 >gi|260869693|ref|YP_003236095.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128] gi|221361432|emb|CAX18585.1| Type III secretion system, LEE associated [Escherichia coli] gi|257766049|dbj|BAI37544.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128] gi|323178902|gb|EFZ64478.1| hypothetical protein ECOK1180_2636 [Escherichia coli 1180] Length = 512 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + + Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F ++AL++ + + L++P++ ++ A K S S+ + G Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385 Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358 +L TP +L L ++ + +P + + T Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505 Query: 419 VKPVAMR 425 +K + Sbjct: 506 IKSASSE 512 >gi|89897873|ref|YP_514983.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56] gi|89331245|dbj|BAE80838.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56] Length = 755 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 5/255 (1%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + V ++V + E + +Q G G S A + + E G Sbjct: 463 KKMVRIEVLLFERKLSSQRQAGLNLLRLGEEVCKKTSSAVSWTSSGILEFLFKGSTGSSL 522 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 S++ L +R A P++ ++ A + VS+ Y Sbjct: 523 VPSYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSADKEKAQYNRAQY 581 Query: 313 GVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G+++ P + G+ + ++T+++ G N + P R V +P G T++ Sbjct: 582 GIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNTNERPDVTRRNITNKVRIPDGETVI 641 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 + GL ++GIP L +IP +G LF + + +TE+F+ TP ++ P ++ Sbjct: 642 IGGLRCKHASDSQDGIPFLGEIPGIGKLFGMNSTSDSQTEMFVFITPKILDNPAEKKERQ 701 Query: 429 RPDDHYSVEDDAKAF 443 S + F Sbjct: 702 EEAILSSRPGENAEF 716 >gi|150021613|ref|YP_001306967.1| type II and III secretion system protein [Thermosipho melanesiensis BI429] gi|149794134|gb|ABR31582.1| type II and III secretion system protein [Thermosipho melanesiensis BI429] Length = 1302 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 52/326 (15%), Positives = 113/326 (34%), Gaps = 34/326 (10%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 +L K + + +++ ++ + N V+ + V+ G+ + + Sbjct: 1004 LLTSEGTKTINTFTFSVPKNVEKIQKLIE--FYGGNSFVDSAAGVVIATGI--DAKIAGE 1059 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA--EVRRDILKQIGFQH 217 E +L+ ++V + E + +G Sbjct: 1060 IRNYIEKYLNSKLA-----------------------LIEVRVVDEEFTNSLDLTLGELT 1096 Query: 218 SITGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 S G+ S G G ++ + + + LA P Sbjct: 1097 SNIGNLSKDGFDITLTLGEMSLEKIVEKLLSVGTVNELTLKLNGKINATDKDTKILASPN 1156 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + A SG+ AS G + ++ + + GV L TP V + I L + +V Sbjct: 1157 VVAKSGEKASILIGDKIPIVLTTAENT-QEIKYIESGVTLEITPFVNADNTIDLELNIKV 1215 Query: 337 SEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 S V +P R R+ ++ + L T+++ GL +++ + + +P+L +PI Sbjct: 1216 SSFDWDVKNVYGLTLPLERTREFNSKISLKENETLIIGGLTREENSKTESKVPILGDLPI 1275 Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419 +G F+ + + + I I + +V Sbjct: 1276 IGKFFKTEKNDLVKRNIIILISAKVV 1301 >gi|217076176|ref|YP_002333892.1| bacterial type II and III secretion system protein [Thermosipho africanus TCF52B] gi|217036029|gb|ACJ74551.1| bacterial type II and III secretion system protein [Thermosipho africanus TCF52B] Length = 1318 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 9/232 (3%) Query: 197 TLKVTIA--EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-FSVKGVLDR 253 ++V + E+ + +G S G+ S + + + G Sbjct: 1088 LIEVKVVDEELSDNFEYNLGKITSDLGTLSNDDFNVKLSLSNLSIEGIINKLLSIGSDGN 1147 Query: 254 FSFETVLHALERATAIRT--LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 S + T T LA P + A SG++AS G + ++ + + Sbjct: 1148 SSLNIEIGNGNNVTNKNTNVLASPNVVAKSGETASILIGDKIPIVLSTAENT-QEIKYIE 1206 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTI 368 GV L TP + + I L + +VS + +P R R+ + + L T+ Sbjct: 1207 SGVTLEITPYINADNTIDLELNIKVSSFDWDLKSQYSLSLPVERTREFSSKILLKENQTL 1266 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 V+ GL +++ + IP+L +PI+G F + + ++ + I I + +VK Sbjct: 1267 VIGGLSREENSKTVSKIPILGDLPIIGKFFVSEKSDKVKRNIVIFISAKVVK 1318 >gi|148252838|ref|YP_001237423.1| general secretion pathway protein D [Bradyrhizobium sp. BTAi1] gi|146405011|gb|ABQ33517.1| General secretion pathway protein D [Bradyrhizobium sp. BTAi1] Length = 751 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 21/247 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-------V 247 QV + TIAEV G Q ++ G + + S + + Sbjct: 471 QVGIDATIAEVTLTNELSYGVQAYLSSKVLGLGTDKGSITNTQTTSVATATTAAATSALI 530 Query: 248 KGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 L F+F +L AL T+++ L+ P+L I+ Q+A+ G T S Sbjct: 531 NRALPGFNFLIGHEASPNMILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGS 590 Query: 300 ------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 S+T ++ + G++L P + + G + L ++ E+S A P+ Sbjct: 591 ATVLSSSNTVVNTIDYRNTGIILRVVPRIAANGNVRLEVEQEISNVAAQSAASLTPTVSQ 650 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 RK + + + +G T++LAGL+ + + GIP +IPILG F + TE+ I Sbjct: 651 RKVKSAISVANGQTVLLAGLISEQQNGNRNGIPGFDEIPILGDTFSHQDKKGTRTELIIF 710 Query: 414 ATPFLVK 420 P +++ Sbjct: 711 IRPQIIR 717 >gi|262064173|gb|ACY07155.1| IV [Enterobacteria phage f1] Length = 426 Score = 146 bits (368), Expect = 9e-33, Method: Composition-based stats. Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 38/355 (10%) Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152 N ++G + + + + I L + + V +D V + Sbjct: 80 NFDMVGSNPSIIQKYNPNNQDYIDELPSSDNQEYDDNSAPSGGFFV-PQNDNVTQTFKIN 138 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194 ++ + E F+ + S NLL ++ D Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSTPKDILDNLPQFLSTVDLPTD 196 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ ++ I EV++ F + + S GG F G+ + Sbjct: 197 QILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307 + AL+ + + L+ P + +SGQ S + G + T + ++ Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGRNVPFITGRVTGESANVNNPFQTI 312 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + G+ + P ++ G I L I ++ A D+ R TTV L G T Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 ++L GL G+P LSKIP++G LF + + EE+ +++ +V+ + Sbjct: 372 LLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|86130937|ref|ZP_01049536.1| general secretion pathway protein D [Dokdonia donghaensis MED134] gi|85818348|gb|EAQ39508.1| general secretion pathway protein D [Dokdonia donghaensis MED134] Length = 728 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 87/243 (35%), Gaps = 19/243 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--- 252 V ++V I EV ++ G + I S + + + + + + Sbjct: 485 VIIEVMILEVSKNSTLDAGIEWGIGQEPSVTQGNIFPNTNLSLGASTINRILGRIDGSSF 544 Query: 253 ------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----- 301 +F + A E + P +T ++G A F++G Y+ + Sbjct: 545 FNIGQVGPNFFATIRASETNGNFNIKSSPRITTLNGHRAYFSNGRTSYYEITQNQFVGVQ 604 Query: 302 ----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356 + + D + L P V G + + I+ S V P R+ Sbjct: 605 NPVVSESVDYVPIDAELSLEVLPFVSEDGEVTMDIKVIQSSFSGERVTENGPPEISSREF 664 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + ++ + +VL GL +D G+P L++IPI+ LF ++++ + P Sbjct: 665 TSIIKSRTNDIVVLGGLEEDSKNNSGSGVPFLARIPIIKWLFSKRVRTASKSKLTVLIKP 724 Query: 417 FLV 419 ++ Sbjct: 725 TVI 727 >gi|323153824|gb|EFZ40066.1| hypothetical protein ECEPECA14_4273 [Escherichia coli EPECa14] Length = 436 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 99/247 (40%), Gaps = 23/247 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + V+I +V + L+Q+G S T ++ S +F + + + S + + Sbjct: 198 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSS------TAQANLSSSVISNA 251 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F ++AL++ + + L++P++ ++ A K S S+ + G Sbjct: 252 NNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 309 Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358 +L TP +L L ++ + +P + + T Sbjct: 310 TLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSILPEVQNSEMTT 369 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G +++L G ++D K+GIPLLS IP++G LF ++ + Sbjct: 370 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKHSVVRLFLIKATP 429 Query: 419 VKPVAMR 425 +K + Sbjct: 430 IKSASSE 436 >gi|170700771|ref|ZP_02891764.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] gi|170134335|gb|EDT02670.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] Length = 244 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 3/194 (1%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + AA G F + F++ + L ALE + ++ P + A Sbjct: 21 NALDLAARPLGGFEAATAGFTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKA 80 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 G + Y+ G + V + L P + GR+ L + +V++ IG Sbjct: 81 IVEQGSELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPT 137 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P+ + T VE+ +GGT+ + G+ + + +PLL KIP+LGALFR+ Sbjct: 138 AAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRD 197 Query: 406 EETEIFIAATPFLV 419 + +E+ + TP +V Sbjct: 198 QRSELVVFITPTVV 211 >gi|329121951|ref|ZP_08250564.1| type II and III secretion system protein [Dialister micraerophilus DSM 19965] gi|327467397|gb|EGF12896.1| type II and III secretion system protein [Dialister micraerophilus DSM 19965] Length = 405 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 98/254 (38%), Gaps = 15/254 (5%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + T A S + ++ L+I E QV ++ + V R K +G Sbjct: 133 QVASDVGTNSVIVNATPRAMSELEHIIKALDIP-EKQVKVEAEVLAVNRSYAKDLGIDWQ 191 Query: 219 IT-----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 S +K+ + S+ G F F+ L+AL Sbjct: 192 FKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAGISYGKSITGNPYTFFFQAKLNALLSDG 251 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSP 325 + LA+P + ++G++A G + + T TS+ D G+ L +TP V Sbjct: 252 KAKILAKPNVVTLNGRTAEILIGSKIPVLVEHMENGTKTTSIEYKDAGIKLTYTPNVSKN 311 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I I EVS P + V R+A TTV L SG + + GL+ + + Sbjct: 312 SEITADIIAEVSTPYL-VPEMKAYRIVTRQAHTTVRLKSGDMLTIGGLIDKEEANNIRKV 370 Query: 386 PLLSKIPILGALFR 399 P+L IPILG LF+ Sbjct: 371 PVLGDIPILGKLFQ 384 >gi|261344599|ref|ZP_05972243.1| type III secretion outer membrane pore, YscC/HrcC family [Providencia rustigianii DSM 4541] gi|282567513|gb|EFB73048.1| type III secretion outer membrane pore, YscC/HrcC family [Providencia rustigianii DSM 4541] Length = 567 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 57/381 (14%), Positives = 121/381 (31%), Gaps = 34/381 (8%) Query: 82 HSPRTMYLFGKN---VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-N 135 + R+ L G+ G +V+ L G + + + + + + Sbjct: 197 VTDRSYSLRGQTVTVPGMLSVMSSLFKSGGSTVEETLDIEPARLNSSDDDIDALMDAPIG 256 Query: 136 IRVEMVSDTVVLH--GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 + VV+ G ++ L G + + V NL N Sbjct: 257 GSTNTNNRQVVIKRGGGAKSTFSL--VAHPDSNSLIVKGSPEQIRYVRELVKNLDN--RR 312 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L + I ++ R L +G + +G F+ + D Sbjct: 313 RQVELSLWIIDITRSELDNLGVNWEVGSFKAGGG--------------AISFNRSTLPDT 358 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F + AL + + ++ P L A F + K ++ YG Sbjct: 359 SKFLVQIDALSKNGNSQIVSRPVLLTQENVPALFDNNTSFYAKL--QGERIATLEQVTYG 416 Query: 314 VVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 ++ P + + + + + E N +PS +T + ++ Sbjct: 417 TMISVMPRISAGQSVEMEVNIEDGAENRDSSGKTSNVEGLPSVNRTSINTVARIAKNSSL 476 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 ++ G ++ + + IPLL IP +G LF ++ N+++ P L+ D Sbjct: 477 LIGGYTREQYVENESKIPLLGDIPWVGRLFSHTSTNQQKMVRIFLIQPRLLDENEAWDGR 536 Query: 429 RPDDHYSVEDDAKAFFFNRVN 449 + + + + + + V Sbjct: 537 QFSESHRI-TEKDSQLHGTVQ 556 >gi|238785761|ref|ZP_04629734.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia bercovieri ATCC 43970] gi|238713344|gb|EEQ05383.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia bercovieri ATCC 43970] Length = 504 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 111/314 (35%), Gaps = 30/314 (9%) Query: 139 EMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194 + V L G+V +++ A + L + S+ N + + Sbjct: 191 QYRDQQVKLPGLVSVLREMTMANNLPLVGGKGQTNSPISTPLFSADPRQNSIIVRDRQVN 250 Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 Q+ + VTI +V + Q+G S + S G SF + G Sbjct: 251 MPIYRSLIAQLDQRPIQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSGSGSSG 310 Query: 239 VSEGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + V+ +F L+AL++ + R L++P++ ++ A K Sbjct: 311 TGKNSADGFSTVIGDTSNFMVRLNALQKNSRARVLSQPSVVTLNNIQAVLDKNVTFYTKL 370 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIG---VNAGDMPSYRV 353 + + G +L TP ++ G + + + + N+ +P + Sbjct: 371 --QGDKVAKLESITSGSLLRVTPRMIDADGEKEVLLNLNIQDGQQQAPISNSEPLPEIQN 428 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 T L G +++L G ++D + + IPLL IP+LG LFR++ Sbjct: 429 SDISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFL 488 Query: 414 ATPFLVKPVAMRDL 427 PV +L Sbjct: 489 IKAV---PVNTGEL 499 >gi|117926538|ref|YP_867155.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1] gi|117610294|gb|ABK45749.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1] Length = 830 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 60/328 (18%), Positives = 117/328 (35%), Gaps = 45/328 (13%) Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L V G+V +I + + T Y S + Sbjct: 252 LPSAAPGGTASPAKAEPKVTSSGVV-SINQETGVISIFATAADHERIGSYLESLMEN--- 307 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---------SGPSKSFAADFGGK 237 QV ++ T+ EV Q G + S Sbjct: 308 -----AHRQVLIESTVVEVTLSDDHQQGVDWASINDDGLSRLSAPFFANSIGVNGGSRPM 362 Query: 238 FVSEGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 +S+ FS+ ++ + + AL + + L+ P + A++ Q+A ++ Sbjct: 363 ALSDLPVFSLPTSINSGFGKITSTVRALAKFGNTKVLSSPKIMALNNQTAVLKVVDNTVF 422 Query: 296 KTVSSSTG---------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 TV + G T V T G+V+ TP + + + L ++ +S Sbjct: 423 FTVEAEAGSSANASGGTDTTALINTRVHTVPVGLVMSVTPQISADDVVTLNVRPTISSVS 482 Query: 341 IGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 V+ + +P +V++ ++ + + SG V+ GL++D I ++ G+PL+S+ Sbjct: 483 RWVSDPNPHLNAGVENLIPEIQVKEMESILRVHSGQITVMGGLMQDKISKVDTGLPLISQ 542 Query: 391 IPILGALFRNSRFNREETEIFIAATPFL 418 +P +G LF +TE+ I P + Sbjct: 543 VPGIGGLFGYKEKTVSKTELVIFMRPVV 570 >gi|83859862|ref|ZP_00953382.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis alexandrii HTCC2633] gi|83852221|gb|EAP90075.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis alexandrii HTCC2633] Length = 622 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 70/353 (19%), Positives = 129/353 (36%), Gaps = 24/353 (6%) Query: 85 RTMYLFGKNVGQA-NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 + +F KN ++I ++ + + + + T +A+ V + Sbjct: 232 NQILVFAKNEDSLGHLIATARRLEEAAEHEDVTRSYVYQVRNTDAEELANIIRTVLGETG 291 Query: 144 TVVLHGMVRTIQDSQRAV-----ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQV 196 G T ++ A L+ + + LL +V Sbjct: 292 RSSSTGAETTAGETAGASSAVSSRLAVDTFGNRLIFTGNRNEYDNLARLLGQLDTPVSEV 351 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 ++VTIAEV ++G + + + G + ++D Sbjct: 352 LVEVTIAEVIFSDTTRLGVEFFL------NTLGGDVQVGTSDGLGLSSGGLSAIVDAGQL 405 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL---------YKTVSSSTGATSV 307 + A + I L+ P + A SG+SA G + S+ SV Sbjct: 406 DIEAAARSTNSNINVLSTPRIVARSGESAEVQVGTDVPIITSQRAANTQDSGSTDILQSV 465 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGG 366 + GV+L P V S RI L I EVS A P R+ +++ L G Sbjct: 466 SYRSTGVLLTVEPRVYSNNRIDLTIMQEVSSADDNPNQAIASPIISNRRMTSSITLQDGQ 525 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T VL GL+ + + + G+PL+ IP+LG +F+ F+ ++ + + TP+++ Sbjct: 526 TAVLGGLMSETVNRGSTGVPLVQDIPVLGNIFKTETFSNDQRVLLVLVTPYIL 578 >gi|170721649|ref|YP_001749337.1| type II and III secretion system protein [Pseudomonas putida W619] gi|169759652|gb|ACA72968.1| type II and III secretion system protein [Pseudomonas putida W619] Length = 625 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 66/458 (14%), Positives = 145/458 (31%), Gaps = 71/458 (15%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P E A + + + + I+ +K + + + V + D Sbjct: 187 PVTLEFRDAELKVIFEVLSQVAGINFIFDKDLRPDMK---ATIFVREVRIEDAIALLLEQ 243 Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + + T+ ++ + + + ++ L D ++ + Sbjct: 244 NQLRQKIVNDNTLLVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 ++ V+ +T+ + ++ +++ ++ + + + Sbjct: 299 DVFVDERLNTLTMRDTPDAVRMAEKLLQSQDQSNPEVVLEVEVMEVA------------- 345 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 R + +G Q T + + + + + + Sbjct: 346 ------------RSRILDLGLQWPNTFGVLSDEGNPVS-----VLDQLRGINSGRISISP 388 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308 + + ++A + I TLA P + + + A G + + SVT Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365 D G+ L PTV + +++ EVS R A T++ L G Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEPTRQGTIPVQVDTRNAQTSLRLHDG 506 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VLAGL+++D IP L IP LG LF ++R + ++E+ +A TP +V+ + Sbjct: 507 ETQVLAGLVRNDKTSSGNKIPGLGDIPGLGRLFGSNRDDMSKSELVLAITPRIVRNLP-- 564 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 Y D + + G Sbjct: 565 --------YQSPSDMEFATGTESSMQVRQLALPLPAGA 594 >gi|330969113|gb|EGH69179.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. aceris str. M302273PT] Length = 700 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 97/288 (33%), Gaps = 17/288 (5%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQ-RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 +V G R+ + R + +K++ L+++ + Sbjct: 262 QVLHYGGGSKSAGKSRSGGRANIRVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNL 320 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + I ++ R+ L ++ + + S GG + + G S + + Sbjct: 321 IEIDAVILDIDRNELAELSSRWNFNAGSVN---------GGANMFDAGTSSTLFIQNAGK 371 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F LHALE + + P++ + Q A S ++ G Sbjct: 372 FAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTS 429 Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L TP L ++ L + E + I PS R T + G++V+ G Sbjct: 430 LQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGG 489 Query: 373 LLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419 + +PLL IP +G LF++ + E TP L+ Sbjct: 490 FHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSQRERLFILTPRLI 537 >gi|170698575|ref|ZP_02889644.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] gi|170136509|gb|EDT04768.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] Length = 783 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 85/426 (19%), Positives = 158/426 (37%), Gaps = 44/426 (10%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72 + + + + P E I + + +S L+K I P V Sbjct: 183 ATMVLPALNQSLQKPVTLELKDVDIRSVLSILTQTSGVSFVLDKDI---SPDLRATVYAR 239 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD--ILIERDIAH-----LEM 125 D + D + +T L K + +++ ++ D ++ + ++ Sbjct: 240 DTSVIDALNLILQTSQLERKVLNDTTMLIYPSTEEKKKRYDDLVVRSYYLNSADPQKVQD 299 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 LR +A ++ V+ +V+ T V L + Sbjct: 300 MLRTIVAPKSMYVDGRLKMLVVR---DTETVQDTIVRL---------------------L 335 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 NL +IA + V L V + EV L +G Q + S+ + A + + Sbjct: 336 NLYDIASPE-VILDVEVLEVNSSDLLNLGIQFPDSVSARMVGPAGVAGSMTIGDLKHLNR 394 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + VL+ + + + RTLA P + ++ + AS G + T + + + Sbjct: 395 DSFPLSFPDPL-AVLNLRQTSGSTRTLANPRIRVVNHEKASVLIGDKVPVITSTVNQTSN 453 Query: 306 SVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKAD 357 ++T D G+ L P + + +++ EVS V R A+ Sbjct: 454 AITESVNYLDVGLKLEVEPEIHVDNDVTMKVALEVSNIVKEVRSSATGLLAYQIGTRNAN 513 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + L G T LAGL+K+D Q+ +P L +IP+LG LF N+R +EI + TP Sbjct: 514 TVLRLHEGETQALAGLIKNDTQESGTHVPGLGRIPVLGRLFSNNRDTATRSEIVLLITPH 573 Query: 418 LVKPVA 423 + + +A Sbjct: 574 IARSLA 579 >gi|6016255|sp|Q01723|HRPH_PSESY RecName: Full=Hypersensitivity response secretion protein hrpH; Flags: Precursor gi|2934881|gb|AAC05014.1| envelope protein [Pseudomonas syringae] gi|148746178|gb|AAB05085.2| HrcC [Pseudomonas syringae pv. syringae] Length = 701 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 16/265 (6%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R + +K++ L+++ + + + I ++ R+ L ++ + + Sbjct: 286 RVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 344 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S GG + + G S + + F LHALE + + P++ Sbjct: 345 FNAGSVN---------GGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSIL 395 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A S ++ G L TP L ++ L + E Sbjct: 396 TLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIE 453 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + I PS R T + G++V+ G + +PLL IP +G Sbjct: 454 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIG 513 Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419 LF++ + E TP L+ Sbjct: 514 KLLFQSRSRELSQRERLFILTPRLI 538 >gi|225874165|ref|YP_002755624.1| transporter, outer bacterial membrane secretin (Secretin) family [Acidobacterium capsulatum ATCC 51196] gi|225794395|gb|ACO34485.1| transporter, outer bacterial membrane secretin (Secretin) family [Acidobacterium capsulatum ATCC 51196] Length = 583 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 76/488 (15%), Positives = 150/488 (30%), Gaps = 76/488 (15%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK----VIILQVPVDVQD 68 + S + P+ ++ + K I + + K ++ Sbjct: 137 ASTAPSGSAENMPESPVDLDIPVAGPVTLHMLADSKVIYLTIGKLLGINVLFDPSSSSNR 196 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQ-----ANVILIGHDG-------------KQML 110 + V + + GK G + + + Sbjct: 197 IQVDLSNVTPYQALN-----IVGKVSGTFWQPVTHNTIFVAQNTPAKRKEYSNQALEVFY 251 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 ++ D ++ LR + I +DT+V+ G + L++ ++ Sbjct: 252 VGNVSQASDFTGIQTALRNVFQSARIFGIESNDTIVMLGTPDE-------LRLAKMLIAS 304 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 + +V + VT+ EV RD +++IG S S + Sbjct: 305 LDEP------------------KPEVLVDVTVMEVSRDKMREIGL-------SPPTSLTV 339 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + G + + + L + + L P L A++G+ AS G Sbjct: 340 NSGSSQTLEQIGHTSAYSITIG----QAAADFLLTDSNTQILQNPRLRALNGEQASLKLG 395 Query: 291 GQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 + T S + T D GV + TP + + L++ +VS Sbjct: 396 ERLPVATGSYTYATGSTSAAAETQFQYLDVGVNIDMTPQIHLDHTVTLKLGVDVSSENGT 455 Query: 343 VN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + P KA V L +G + +LAGLLK ++ Q G P +IP + LF Sbjct: 456 EDLEGVEEPIISQEKAQQIVRLKNGESTILAGLLKKEVSQTVSGWPGFGEIPFMKYLFTT 515 Query: 401 SRFNREETEIFIAATPFLVKP--VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 + E+ TP +++ V + D + + ++N K + Sbjct: 516 QKHEVTSDELVFMITPHIIRSPQVDPLTMREIDTGTADMIQLRE-PPGQLNSSLAAKPKA 574 Query: 459 EVEGQNYK 466 Sbjct: 575 ASSQAASH 582 >gi|227114189|ref|ZP_03827845.1| type III secretion protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 689 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 62/435 (14%), Positives = 131/435 (30%), Gaps = 57/435 (13%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99 G I + N + + + V++ A V + + + + G A + Sbjct: 169 TGPQAYIDLIRNFSQQREKQDERRKVMIFPLRYASVSDRTLQYRDQKVTI----PGVATI 224 Query: 100 I--LIGHDGKQML----NLDILIERDIAHLEMTLRRFI--------ADSNIRVEMVSDTV 145 + L+ + + + + + + R + N V Sbjct: 225 LNELMDGQRAAPAGASGPMPVQPDNGMEAMRESTRSLMTRLATRNNPGRNGEAS---GRV 281 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L G + ++ + +++++ +++ V + I +V Sbjct: 282 TLSGKISAD---------VRNNALLIRDDEKRRAEYQQLVDHIDVPQNL-VNIDAIILDV 331 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 R L ++ + + FVS D F + ALE Sbjct: 332 DRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADIQALEG 380 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 +A P++ + Q A + G L TP V+ Sbjct: 381 EGTASIVANPSVLTLENQPAIVDFSRTAFITAT--GERVADIQPVTAGTSLQVTPRVIGE 438 Query: 326 G-RIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G + +++ ++ + + S R T + +VL G ++ Sbjct: 439 GAQRSIQLVIDIEDGQVETGREGEASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDR 498 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 IP+L IP+LG LF ++R E TP LV D + P + S + + Sbjct: 499 RIPILGDIPLLGQLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSANRQQ-- 551 Query: 444 FFNRVNKIYGPKEAS 458 +N++ + Sbjct: 552 LNGAMNRVAQRNGKT 566 >gi|163757297|ref|ZP_02164392.1| type II general secretion pathway (GSP) D protein [Kordia algicida OT-1] gi|161322754|gb|EDP94108.1| type II general secretion pathway (GSP) D protein [Kordia algicida OT-1] Length = 721 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 90/242 (37%), Gaps = 18/242 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V ++V + +V + + + G I + S S + + + G S Sbjct: 479 VLIEVMLIDVSKLSVVETGISWGIGDEPTQTSGSLFPTTNLTLGANTVNRVIGGFDGFGS 538 Query: 256 FE---------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---------KT 297 F + A+E+ I+ + P ++ ++G A+ ++G Y Sbjct: 539 FNLGKVVPEFFANISAMEQDGDIKIRSTPKISTLNGHRATLSNGTTSYYAVTQRNIYGTN 598 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 ++ T+ D + + P V G++ L I S ++ P R+ Sbjct: 599 NPQTSEITNYYPIDAELGISIKPIVSGDGQVTLDIFVIQSTFGSRISEDAPPDISSREFR 658 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + + + VL G+ + + G+P L++IP++ F + ++++ + P Sbjct: 659 SIIRMRDQDIAVLGGIEEKQKRDEGNGVPFLARIPVIKWFFSKRKRQDSKSKLTVLIKPT 718 Query: 418 LV 419 ++ Sbjct: 719 VI 720 >gi|9630770|ref|NP_047372.1| putative maturation protein [Vibrio phage fs2] gi|3702216|dbj|BAA33484.1| unnamed protein product [Vibrio phage fs2] Length = 500 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 76/397 (19%), Positives = 143/397 (36%), Gaps = 25/397 (6%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD-PTKADVVVHSPR 85 E++ I + I + L + ++ V D++ ++ P D V Sbjct: 65 AAPFESSDTPIAEFASWYSQQTGIKVVLGQGVLGSVSFTAPDLVPAEYPAFFD-SVLRAH 123 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 YL G A VI I + K+++ I+ ++ + + S ++ Sbjct: 124 GYYLV--KDGNAYVIKIAPEAKEVITPAIVKLYRFNYIRNSKLSDLVQSTLKATS----- 176 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 V+ Q +VE+ + V+ + Q+ ++ I E Sbjct: 177 --SEFVKDKQVDNYSVEILPNTNALIVSGTAQQLEKLDVLLSAIDVPQRQIFIEAVITET 234 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 ++G A F V+ + + F ++ A+ Sbjct: 235 ELGDNSELGVNLQAAFDK--------AGFVTNLVNASKLKDNLFIFESGDFNALVKAISG 286 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPT 321 ++ R L+ P + + + T G + +S+T + D GV L TP Sbjct: 287 SSDTRLLSRPNILIMDRERGYITVGQNVPFLVSNSTTDGGTSVQRIERKDVGVSLEVTPH 346 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 V+ I L I E S A D+ R TTV + SG TIVL GL+ D+ + + Sbjct: 347 VMGDDVI-LVINQESSSVTDSTIAADI-ITNKRTLMTTVAVKSGQTIVLGGLISDEKRNV 404 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + G+P+L P++G LFR++ + E+ + + Sbjct: 405 ESGVPVLKDTPLIGGLFRSTSTKNVQKELRVVIKSTV 441 >gi|30249573|ref|NP_841643.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas europaea ATCC 19718] gi|30138936|emb|CAD85515.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas europaea ATCC 19718] Length = 763 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 84/422 (19%), Positives = 145/422 (34%), Gaps = 59/422 (13%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P E + I + I+ ++ + + V D + DV Sbjct: 186 PITMEFRDTSLKTMFELISRTAGINFVFDRNVQ---QEATASIFVRDNSIEDVLKLMLLT 242 Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 V + T+ ++ + + ++ + D+ + +R + Sbjct: 243 NQLAYKVLNSNTLLIYPDTPAK-----QKDYQELVVRSFHVANTDVKQMVAMIRGLVKAR 297 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 +I V + V+ + + L E ++ + Sbjct: 298 DIYVNEKLNLFVIRDTL-------EMIRLVERLVAINDFPDPE----------------- 333 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLDR 253 V L V + EV+RD +G + + S P A V + G Sbjct: 334 -VMLDVVVLEVKRDSTLDLGPNMPTSVTFSAVPGIGTPAQAAADSVVKMSMIKNTGFEGL 392 Query: 254 FSFE----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306 SF + T LA P + S + A G + TV+++ A S Sbjct: 393 RSFTISNQARIDFGRTLTNADVLANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAAS 452 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTV 360 T D G+ P V + + L+ EVS G NA R A+T + Sbjct: 453 ATYIDVGLKFEVEPVVRTNNEVTLKALLEVSSNLGEKRSGSGENAATAIVIGTRTAETVL 512 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL G T VLAGL++DD+ +++ GI L+ IP+LG +F +TEI + TP +V+ Sbjct: 513 ELRDGETQVLAGLIQDDLSRVRSGIAGLTDIPVLGDIFSKQVRKHNKTEIILLITPHIVR 572 Query: 421 PV 422 V Sbjct: 573 NV 574 >gi|66044451|ref|YP_234292.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. syringae B728a] gi|63255158|gb|AAY36254.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. syringae B728a] Length = 700 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 16/265 (6%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R + +K++ L+++ + + + I ++ R+ L ++ + + Sbjct: 285 RVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 343 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S GG + + G S + + F LHALE + + P++ Sbjct: 344 FNAGSVN---------GGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSIL 394 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A S ++ G L TP L ++ L + E Sbjct: 395 TLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIE 452 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + I PS R T + G++V+ G + +PLL IP +G Sbjct: 453 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIG 512 Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419 LF++ + E TP L+ Sbjct: 513 KLLFQSRSRELSQRERLFILTPRLI 537 >gi|319786555|ref|YP_004146030.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis 11-1] gi|317465067|gb|ADV26799.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis 11-1] Length = 711 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 55/291 (18%), Positives = 105/291 (36%), Gaps = 44/291 (15%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + ++V+ L++ +QV ++ + E+ D +++G Q + G Sbjct: 348 ADPDTQRTLQEVIRQLDVR-REQVLVEALVVEISDDAARKLGTQLLLAGKDGTVPAGMTQ 406 Query: 233 DFGGKFVSEGGDFSVKGVLDRFS------------------------------------- 255 V R Sbjct: 407 FGNAGPGMAALAGGVLASRGRGGDDDDDGAADAIREAAAQSLLGLSGGLLGIGGQSKDRL 466 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTH 310 F +++A+ L+ P++ + + A G + T +++ ++ Sbjct: 467 FGIIINAVRSDARSNVLSTPSILTLDNEEAHILVGEEVPVTTGEVLSNNNNNPFRTIDRQ 526 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIV 369 D GV L P + S G I L I+ EVS V+ + D R+ +T V + G I Sbjct: 527 DVGVRLTVRPQINSGGGITLAIRQEVSSVSGTVSRSSDELVLNKREIETNVVVDDGAMIA 586 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L GLL ++ +PLL IP+LGALFR++ + T + + P +++ Sbjct: 587 LGGLLDHTSSDRRDKVPLLGDIPVLGALFRSTSRSSTRTNLMVFLRPTVIR 637 >gi|323957549|gb|EGB53264.1| general secretion pathway protein D [Escherichia coli H263] Length = 615 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 57/300 (19%), Positives = 104/300 (34%), Gaps = 44/300 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + S + + D Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612 >gi|299139665|ref|ZP_07032838.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] gi|298598289|gb|EFI54454.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] Length = 838 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 71/415 (17%), Positives = 136/415 (32%), Gaps = 52/415 (12%) Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-LIERDIAHLEMTLRRFI-ADSNI 136 +P T+ + + + Q+ L + D + + LR + I Sbjct: 263 YKPLTPNTILV--AQNSRTKRTDLDQLACQIFYLTSPDQQNDANEILIALRNMLDPAIKI 320 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + D +VL G + + K++N L+ + +V Sbjct: 321 YLVSTQDAIVLRGTPDELMLA------------------------GKLINDLD-REKPEV 355 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKFVSEGGD 244 + V + EV +D + +G + S ++ + + + F Sbjct: 356 VIDVAVMEVDKDKTRTLGITLPQSFSLTPQASSSNNNNAANNNSNSGSQSSSSFTLNTLA 415 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG- 303 + ++AL + T R L P L A GQ A+ G + + S S+ Sbjct: 416 NTNATNFAVTVTGGTVNALLQDTNTRILQNPRLRATDGQKATLKIGQRVPIASGSLSSPV 475 Query: 304 --------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRV 353 T T D G + TP V S G + L+++ EVS+ ++ P Sbjct: 476 GGVSSLGVQTQFTYVDVGTNMDITPAVHSDGSVSLKMKVEVSQVDTYDTISGVQEPVIGQ 535 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + + T++L G +LAGL+ G P L ++P+L LF + EI Sbjct: 536 KVLEQTIKLRDGEPSILAGLVTKQDSVAGSGTPGLGELPVLKYLFGTQTKTLQNDEIVFL 595 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 P +++ ++ L+ + + + A G Sbjct: 596 LVPHIIRETLLQKLNLRAIDTGTANVVELRRLSTGEDSSAFAPAVRKPADRDVGP 650 >gi|238787451|ref|ZP_04631249.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia frederiksenii ATCC 33641] gi|238724238|gb|EEQ15880.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia frederiksenii ATCC 33641] Length = 481 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 10/228 (4%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 Q+ + VTI +V + Q+G S + S G SF + D + Sbjct: 252 RPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSGN----AKSNADGFSTVIG 307 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D +F L+AL++ + R L+ P++ ++ A K + + Sbjct: 308 DTGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL--QGDKVAKLESVT 365 Query: 312 YGVVLHFTPTVLSPGRIG-LRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGT 367 G +L TP +++ + + + + + ++ +P + T L G + Sbjct: 366 SGSLLRVTPRMINSDGVKEVMLNLNIQDGQQQAPISSSEPLPEIQNSDISTQATLRVGQS 425 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++L G ++D + + IPLL IP+LG LFR++ Sbjct: 426 LLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTEKQSHSVVRLFLIK 473 >gi|193070395|ref|ZP_03051337.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli E110019] gi|192956334|gb|EDV86795.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli E110019] Length = 512 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + + Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F ++AL++ + + L++P++ ++ A K S S+ + G Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385 Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358 +L TP +L L ++ + +P + + T Sbjct: 386 TLLRVTPRILDGSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505 Query: 419 VKPVAMR 425 +K + Sbjct: 506 IKSASSE 512 >gi|304415496|ref|ZP_07396135.1| type III outer membrane secretin precursor [Candidatus Regiella insecticola LSR1] gi|304282655|gb|EFL91179.1| type III outer membrane secretin precursor [Candidatus Regiella insecticola LSR1] Length = 493 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 116/305 (38%), Gaps = 21/305 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR--TIQDSQRAVELSETFLSQSGRN 174 E + L LR A + + V + + + + + Q AV + + Sbjct: 196 EVQLPGLVTVLREMSAGNTLPVNTANGGKIENTSLPLFSADPRQNAVVVRDR-------- 247 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 Q K ++N L++ + + VTI +V + Q+G + + S +G SF + Sbjct: 248 QANMPIYKSLINQLDLRPIG-IEISVTIIDVDAGNINQLGIDWTSSTSLAGNKVSFRSGL 306 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + D + D +F L AL++ + R L+ P++ ++ A Sbjct: 307 ----IPGSNDSFSSVIGDTDNFMVRLKALQQNSRARVLSRPSVVTLNNIPAVLDKNITFY 362 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTV-LSPGRIGLRIQTEVSEPVIGVNAGD---MPS 350 K + + G +L TP + GR + + + + V + +P Sbjct: 363 TKL--QGDKVAKLESITSGSLLRVTPRMINDNGRHEVLLNLNIKDGVQKSSNNATEPLPQ 420 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + + T L G +++L G ++D + ++ +P L IP++G LFR++ + Sbjct: 421 VQDSQISTQATLKIGQSLLLGGFIQDRQSEAEKKVPFLGDIPVIGELFRSTDKHSHSVVR 480 Query: 411 FIAAT 415 Sbjct: 481 LFLIK 485 >gi|257454916|ref|ZP_05620164.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60] gi|257447626|gb|EEV22621.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60] Length = 776 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 104/293 (35%), Gaps = 42/293 (14%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + T S+ + +++ ++IA + QV ++ I K++G + I Sbjct: 482 ARTNTLIVKDTAETISNIRDLISKIDIAVK-QVMIEARIVSATDTFSKELGVKWGILSQG 540 Query: 224 SGPSKSFAADFG-------------------------------------GKFVSEGGDFS 246 + +++ G + G Sbjct: 541 AASNRNLLVGGNLSTIDSLKTYTTATNSDGTTYPVYSGITAANNLSVNLGATNAAGSIAF 600 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + L A++ ++ P + Q+A SG Q Y+ S++GATS Sbjct: 601 GLLSISDLLLDLELSAMQADNKGEVISSPKVLTADKQTARIMSGTQIPYQEA-SASGATS 659 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + + + L TP + GRIG+ + E P I + T V + G Sbjct: 660 TSFVEAALSLEVTPNITPEGRIGMDLSIENGSPTI---VNGATAISKDSIKTNVVVDDGQ 716 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T+VL G+ K+ + IP L +P + F+ + + + E+ I TP LV Sbjct: 717 TVVLGGVFKNTLGNDVTKIPFLGDLPYVDRFFKRTSKSNNKQELLIFVTPKLV 769 >gi|330815113|ref|YP_004358818.1| secretion type II protein gspD [Burkholderia gladioli BSR3] gi|327367506|gb|AEA58862.1| secretion type II protein gspD [Burkholderia gladioli BSR3] Length = 847 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 66/391 (16%), Positives = 143/391 (36%), Gaps = 40/391 (10%) Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 DV T++L + ++ +G LD + L+ + + Sbjct: 228 DVKTDQRTTIFLKNSTIDATVRYVLATNGLAQQVLDENTVLIYPNTPAKLKDYQELAVRT 287 Query: 138 VEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + + + + ++TI + V + + A ++++++L ++ + V Sbjct: 288 FFLSNTEAKTIANTLKTILKVRDVVADEKLNMVIVRDTPDAIRMAERLVSLEDVPEPE-V 346 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------- 246 L+V + EV+R+ +G + + + + Sbjct: 347 MLEVEVLEVQRNNELNLGVAWPGSVNVTPLPLGSVIAPVTGQNTNTNTPYYPYGYGGGFG 406 Query: 247 ----------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + S + ++A + + ++ L P + + + Sbjct: 407 GGFGGGSNGTSPALTMNDLLHQTVRTIGLSSLQATVNANVQDSTVKLLTNPRIRVRNHEK 466 Query: 285 ASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A G + T ++++ + SV D G+ L+ PTV +G+++ EVS Sbjct: 467 AKILIGERVPNFTSTATSTGFLSQSVNYLDIGLTLNVEPTVYLDDTVGIKLALEVSSLGN 526 Query: 342 GVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + R A T ++L +G T VLAGL+ ++ + +P L ++P+LG LF Sbjct: 527 TITTTTGTAAYQIGTRTASTVLQLKNGETDVLAGLIDNEERTSGNKLPGLGQLPVLGRLF 586 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + + TEI +A TP LV+ + D Sbjct: 587 GATDDQAKNTEIVLAITPHLVRNIRRPDADL 617 >gi|254000203|ref|YP_003052266.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4] gi|253986882|gb|ACT51739.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4] Length = 714 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 103/283 (36%), Gaps = 48/283 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++N +I + QV ++ + K +G + +T S+ G + Sbjct: 430 QQIINKTDIPVK-QVMIESRLVIADEKFGKSLGARFGMTQQSADGRNVIGGTLGNRITEV 488 Query: 242 GGDFSVKGVLDRFSFETVL---------------------HA------------------ 262 D ++ + +T +A Sbjct: 489 SSDGTITQGTHNGTIQTATTGSTATSSDGEPDLMSNLPVSNAYGNLAFTLLRLPAGLLLN 548 Query: 263 -----LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 LE + ++ P +T + + A G + Y SS+GATSV D + L Sbjct: 549 LELSALETDKRGKVVSSPRVTTANQKKAQIQQGTKIPYLRA-SSSGATSVQFVDATLSLE 607 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP V +I + + + + +G +PS + DT V + +G T VL G+ + Sbjct: 608 VTPQVTPDDKIIMDLT--IKKDRVGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQT 665 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P IP LG F+ ++TE+ I TP ++ Sbjct: 666 ERNDVDKVPFFGDIPFLGNAFKRRVKQNDKTELLIFITPKIMD 708 >gi|156973989|ref|YP_001444896.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116] gi|156525583|gb|ABU70669.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116] Length = 623 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 111/308 (36%), Gaps = 37/308 (12%) Query: 146 VLHGMVRTIQDSQRAVE-----LSETFLSQSGRNQYANSSSKKVMNLLNIAGED------ 194 VL G V+T + + E + T + A+ ++ +N + + Sbjct: 222 VLSG-VQTQIKATKESEETDINTAATTTKNVSVHGGASVEAEPGLNAIIVRDTQARLPLY 280 Query: 195 ----------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFV 239 Q ++V +I ++ + L Q+G S G G V Sbjct: 281 RKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSILDIKTTGDVDGGDV 340 Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G + K +LD + + LE + + ++ PTL A + K Sbjct: 341 TLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYIK 400 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSY 351 + T A + YG +L P ++ I L + E + D+PS Sbjct: 401 LIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSI 458 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T Sbjct: 459 RKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRM 518 Query: 412 IAATPFLV 419 P +V Sbjct: 519 FIIEPRIV 526 >gi|188532685|ref|YP_001906482.1| HrcC protein (hrp cluster) [Erwinia tasmaniensis Et1/99] gi|188027727|emb|CAO95580.1| HrcC protein (hrp cluster) [Erwinia tasmaniensis Et1/99] Length = 676 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 71/472 (15%), Positives = 139/472 (29%), Gaps = 40/472 (8%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73 L + + + V+ + G + + + + D + V+ Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELIKRFSEQREKKEDRRKVMTFPL 183 Query: 74 --PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT--LRR 129 + AD + + G A ++ +GK+ A T + + Sbjct: 184 RYASVADRTIRYRDQTVVI---PGVATMLNELMNGKRPAPASASGSDGTAGAPDTGSMMQ 240 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 R+ + T G + D + +S + + + + + L+ Sbjct: 241 NTQSLLSRLSSRNKTPGRAGDRDSGID-DLSGRISADVRNNALLIRDDDKRRDEYSQLIG 299 Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 Q V + I ++ R L ++ T S + G FVS Sbjct: 300 KIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS------- 352 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 D F + ALE +A P++ + Q A + Sbjct: 353 ----DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 406 Query: 308 TTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365 G L TP + G +++ ++ + + N + R T + Sbjct: 407 QPVTAGTSLQVTPRAVGYEGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALIGEN 466 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL G ++ IPLL IP +G LF ++R + + TP L+ Sbjct: 467 RALVLGGFHVEESGDRDRRIPLLGDIPWIGKLFTSTRHEISQRQRLFILTPRLIGDQTDP 526 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIGF 471 D+ DA RV + + E + + + GF Sbjct: 527 TRYVTADNRQQLSDA----MGRVERRHSNVNQHDVVENALRDLAEGQSPAGF 574 >gi|330975856|gb|EGH75922.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 702 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 16/265 (6%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R + +K++ L+++ + + + I ++ R+ L ++ + + Sbjct: 287 RVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 345 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S + + G S + + F LHALE + + P++ Sbjct: 346 FNAGSVNGGANMF---------DAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSIL 396 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A S ++ G L TP L ++ L + E Sbjct: 397 TLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIE 454 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + I PS R T + G++V+ G + +PLL IP +G Sbjct: 455 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVG 514 Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419 LF++ + E TP L+ Sbjct: 515 KLLFQSRSRELSQRERLFILTPRLI 539 >gi|153832481|ref|ZP_01985148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio harveyi HY01] gi|148871276|gb|EDL70148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio harveyi HY01] Length = 623 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 112/308 (36%), Gaps = 37/308 (12%) Query: 146 VLHGMVRTIQDSQRAVE-----LSETFLSQSGRNQYANSSSKKVMNLLNIAGED------ 194 VL G V+T + + E + T + A+ ++ +N + + Sbjct: 222 VLSG-VQTQIKATKESEETDINAAATTTKNVSVHGGASVEAEPGLNAIIVRDTQARLPLY 280 Query: 195 ----------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFV 239 Q ++V +I ++ + L Q+G + S G G V Sbjct: 281 RKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGIEVANNSILDIKTTGDVDGGDV 340 Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G + K +LD + + LE + + ++ PTL A + K Sbjct: 341 TLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVK 400 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSY 351 + T A + YG +L P ++ I L + E + D+PS Sbjct: 401 LIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSI 458 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T Sbjct: 459 RKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRM 518 Query: 412 IAATPFLV 419 P +V Sbjct: 519 FIIEPRIV 526 >gi|255349063|ref|ZP_05381070.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis 70] gi|255503601|ref|ZP_05381991.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis 70s] gi|255507281|ref|ZP_05382920.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis D(s)2923] gi|296439006|gb|ADH21159.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis E/11023] Length = 921 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626 Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253 + +++ G G++ Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686 Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 + +L AL++ + P + A Q ASF G ++T Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + ++ D GV L T T+ + L+I+ +SE P A T Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 866 SSFEEGTALSNTEGYR 881 >gi|15605407|ref|NP_220193.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis D/UW-3/CX] gi|3329125|gb|AAC68269.1| probable Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis D/UW-3/CX] gi|297748805|gb|ADI51351.1| General secretion pathway protein D [Chlamydia trachomatis D-EC] gi|297749685|gb|ADI52363.1| General secretion pathway protein D [Chlamydia trachomatis D-LC] Length = 921 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626 Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253 + +++ G G++ Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686 Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 + +L AL++ + P + A Q ASF G ++T Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + ++ D GV L T T+ + L+I+ +SE P A T Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 866 SSFEEGTALSNTEGYR 881 >gi|255311500|ref|ZP_05354070.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis 6276] gi|255317802|ref|ZP_05359048.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis 6276s] Length = 921 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626 Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253 + +++ G G++ Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686 Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 + +L AL++ + P + A Q ASF G ++T Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + ++ D GV L T T+ + L+I+ +SE P A T Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 866 SSFEEGTALSNTEGYR 881 >gi|149178109|ref|ZP_01856704.1| general secretion pathway protein D (Precursor) [Planctomyces maris DSM 8797] gi|148843029|gb|EDL57397.1| general secretion pathway protein D (Precursor) [Planctomyces maris DSM 8797] Length = 1307 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 60/390 (15%), Positives = 133/390 (34%), Gaps = 41/390 (10%) Query: 57 VIILQVPVDVQDVLVS-DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 + + +D Q L++ DP R + + + + + +++ Sbjct: 841 SVAINEFLDTQRALIAQDPDLISSFELLEREVIVVPEAI----------NNNLIISATPR 890 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 I++L L + I+ +++ + + + L ++ L Sbjct: 891 YFEQISNLVKQLDKEAPQVIIQA------LIVEVELDNDDEFGVELGLQDSLLFNRSIID 944 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIA--EVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 + + + N+ +Q TI E L +++ + + A Sbjct: 945 NVLTVQQTITGQNNVTQTNQ-----TIVSQEATPGFLFNSINPLGTNNTNNVSNTAGQAL 999 Query: 234 FGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 D G++ S ++ AL + L+ P + + +A G Sbjct: 1000 SNFSLQRGNSDLGFGGLVLSASSESVSILIRALAAKRNVHVLSRPQIRTVDNVTAQIQVG 1059 Query: 291 GQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------- 338 S + + + G++L TP + G I + Q E S+ Sbjct: 1060 QIVPVVNGVSVTAVGSANPVIQQSEAGIILTVTPRISPDGNIVMETQAEKSDFNGSSVPI 1119 Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 N + P + + TTV +P+G T+VL G++ + ++ +P L IP++G Sbjct: 1120 FTDATTGNVVESPIKNITQVQTTVSVPNGQTVVLGGMITESDTTIERKVPWLGDIPLIGI 1179 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426 FR + E+ + TP +++ A + Sbjct: 1180 PFRYDYSSTRRKELLVFLTPRIIRNDADSE 1209 >gi|289679098|ref|ZP_06499988.1| general secretion pathway protein D [Pseudomonas syringae pv. syringae FF5] Length = 221 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 11/208 (5%) Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--- 294 + + + + L ALE + L+ P+L ++ Q A G Sbjct: 1 GAALASTDAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQ 60 Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDM 348 ++ T +SV GV+L P + G + + IQ +VS N A Sbjct: 61 TSINTNTNAGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGN 120 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R T V SG T++L GL+K D + +P L +IP L LF N+ ++ T Sbjct: 121 PRISTRSVATQVAAQSGQTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRT 180 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSV 436 E+ + TP ++ + + D Y Sbjct: 181 ELIVLITPRVI--TSSSQARQVTDDYRQ 206 >gi|237805025|ref|YP_002889179.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/TZ1A828/OT] gi|231273325|emb|CAX10240.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/TZ1A828/OT] Length = 921 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626 Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253 + +++ G G++ Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686 Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 + +L AL++ + P + A Q ASF G ++T Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + ++ D GV L T T+ + L+I+ +SE P A T Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 866 SSFEEGTALSNTEGYR 881 >gi|166154016|ref|YP_001654134.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis 434/Bu] gi|301335216|ref|ZP_07223460.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis L2tet1] gi|165930004|emb|CAP03487.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis 434/Bu] Length = 921 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626 Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253 + +++ G G++ Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686 Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 + +L AL++ + P + A Q ASF G ++T Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + ++ D GV L T T+ + L+I+ +SE P A T Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 866 SSFEEGTALSNTEGYR 881 >gi|166154891|ref|YP_001653146.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|165930879|emb|CAP06441.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 921 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626 Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253 + +++ G G++ Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686 Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 + +L AL++ + P + A Q ASF G ++T Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + ++ D GV L T T+ + L+I+ +SE P A T Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 866 SSFEEGTALSNTEGYR 881 >gi|76789414|ref|YP_328500.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13] gi|237803104|ref|YP_002888298.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/Jali20/OT] gi|76167944|gb|AAX50952.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13] gi|231274338|emb|CAX11133.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/Jali20/OT] Length = 921 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626 Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253 + +++ G G++ Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686 Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 + +L AL++ + P + A Q ASF G ++T Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + ++ D GV L T T+ + L+I+ +SE P A T Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 866 SSFEEGTALSNTEGYR 881 >gi|289525718|emb|CBJ15199.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis Sweden2] gi|296435288|gb|ADH17466.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis E/150] Length = 921 Score = 144 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626 Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253 + +++ G G++ Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686 Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 + +L AL++ + P + A Q ASF G ++T Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + ++ D GV L T T+ + L+I+ +SE P A T Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 866 SSFEEGTALSNTEGYR 881 >gi|270157060|ref|ZP_06185717.1| type II secretory pathway protein LspD [Legionella longbeachae D-4968] gi|289164527|ref|YP_003454665.1| type II protein secretion LspD [Legionella longbeachae NSW150] gi|269989085|gb|EEZ95339.1| type II secretory pathway protein LspD [Legionella longbeachae D-4968] gi|288857700|emb|CBJ11543.1| type II protein secretion LspD [Legionella longbeachae NSW150] Length = 786 Score = 144 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 106/275 (38%), Gaps = 24/275 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+V+ L+I Q+ ++ +AE+ +D + +G + + P Sbjct: 489 KRVIGQLDIK-PAQLLIEALVAEINQDDVNDLGIEWGSNQQTGKPGGFR----------- 536 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + F+ ++AL RA L+ P++ + + A G Q + + Sbjct: 537 NGFAIINSKTQIADFQAQIYALARAHKANILSTPSVVVLDNRQAKILVGKQVSVASTNYP 596 Query: 302 T---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPS 350 T+ + + L+ P + I ++I +P A P+ Sbjct: 597 NNAGGTTPASPYTTFDRVNVALHLYVRPQITRGNGIQMQIDQGNDTLDPPATAEASVNPT 656 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R+ T+V + SG +VL GL +D + +P+L +P +G LF+ + RE+ + Sbjct: 657 FRISSIVTSVHVESGDIVVLGGLTQDRLDNDNNRLPVLGDLPGVGRLFKRNINTREKRVL 716 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 + P +++ + + Y+ + + Sbjct: 717 MVFIKPIILRN-ERDTMHLSGEKYNNIRQYELDWL 750 >gi|296437143|gb|ADH19313.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis G/11222] Length = 921 Score = 144 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626 Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253 + +++ G G++ Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686 Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 + +L AL++ + P + A Q ASF G ++T Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + ++ D GV L T T+ + L+I+ +SE P A T Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 866 SSFEEGTALSNTEGYR 881 >gi|196230668|ref|ZP_03129529.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] gi|196225009|gb|EDY19518.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] Length = 864 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 69/379 (18%), Positives = 129/379 (34%), Gaps = 112/379 (29%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A+ + ++ Q ++++ G QV ++ E+++ LK++GF + Sbjct: 462 AIYIIKSSRLIVRNTQDQLDLVEQIVTSTGGQGPVQVEIESKFVEIQQTNLKELGFDWLL 521 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD----------------------------------- 244 + + + A G + + Sbjct: 522 GQFNLPSTYNAFAGGGTTGTAPALNPSDFPFVNGGVPVGQNSITAGNRSGNNGISANAID 581 Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 +V GV F+ V+ AL + + L+ P +T SGQ A Sbjct: 582 ALLFPINGSSQVAPAIAAVAGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRAVIE 641 Query: 289 SGGQHLYKTVSSS-------------------------------TGATSVTTHDYGVVLH 317 + Y T + T T+ T + GV L Sbjct: 642 IIREFRYPTEFTPPQIPQTFGNTGGGILGGGGGSSSTGSFPVTPTTPTAFETRNTGVTLE 701 Query: 318 FTPTVLSPG-RIGLRIQTEV-------------------------SEPVIGVNAGDMPSY 351 P + G I L + +V ++ VI N + P + Sbjct: 702 VEPVIGPDGYTIDLNLVPQVVEFEGFINYGSPITSSVTNPITGTSTQAVITPNVINQPIF 761 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 RK T+V + G T+VL GL+++D+Q++++ +P++ +PI+G LFR+S + + Sbjct: 762 STRKVTTSVSVYDGSTVVLGGLIREDVQKVEDKVPIIGDVPIIGRLFRSSIDQHIKRNLI 821 Query: 412 IAATPFLV----KPVAMRD 426 I T L+ +PV D Sbjct: 822 IFVTARLINAAGEPVRAED 840 >gi|262064162|gb|ACY07145.1| IV [Enterobacteria phage f1] Length = 426 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 63/355 (17%), Positives = 124/355 (34%), Gaps = 38/355 (10%) Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152 N ++G + + + + I L + + V +D V + Sbjct: 80 NFDMVGSNPSIIQKYNPNNQDYIDELPSSNNQEYDDNSAPSGGFFV-PQNDNVTQTFKIN 138 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194 ++ + E F+ + S NLL ++ D Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSAPKDILDNLPQFLSTVDLPTD 196 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ ++ I E+++ F + + S GG F G+ + Sbjct: 197 QILIEGLIFEIQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307 + AL+ + + L+ P + +SGQ S + G + T + ++ Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTI 312 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + G+ + P ++ G I L I ++ A D+ R TTV L G T Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 ++L GL +P LSKIP++G LF + + EE+ +++ +V+ + Sbjct: 372 LLLGGLTDYKNTSQDSDVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|302038138|ref|YP_003798460.1| putative general secretion pathway protein D [Candidatus Nitrospira defluvii] gi|300606202|emb|CBK42535.1| putative General secretion pathway protein D [Candidatus Nitrospira defluvii] Length = 765 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 78/452 (17%), Positives = 150/452 (33%), Gaps = 71/452 (15%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 P + A + +GK ++ +K V D + + D + + + Sbjct: 169 PVTLQFRNAGLKEVVEALGKAAHVNFVFDK----DVRNDPVTISLEDKPFDEALSLVLNS 224 Query: 87 MYLFGKNVGQANVIL-------IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 LF + G I+ M+ L + L+ + +I Sbjct: 225 NSLFAQKAGPTLYIISPNTKQKQEQYQDLMIRTFYLSSAKAKDMVALLKSMLDVKHIHGN 284 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 +T+V+ ++ +++ ++ N + +V Sbjct: 285 EALNTIVIRDQPEKVELAEKIIQA-------------------------NDREDSEVLFD 319 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--- 256 V + EV R + + G + ++ F G + ++ + Sbjct: 320 VEVLEVNRTVDQTYGLSYPKQIGAALIPPGFTGAIAGDIAQQFTYRNLASLGQDSYLFKL 379 Query: 257 --ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--------------TVSS 300 L ++ T +TLA P + ++ + A G + V + Sbjct: 380 PTNVQLDFFKQVTDAKTLAAPKVRVLNNKKAEVNIGDKQPILLSTTNVLPGQAATGAVPT 439 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR-----VRK 355 ++ TS+ D GV L P + + L+++ EV V P R Sbjct: 440 TSTVTSIEFRDTGVKLTVEPNIHLANELALKMKIEVIRLGDVVLLQQSPPITQFKFGNRS 499 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A+T + + G TIVL GLL+++ ++ K IP L IP LG L + + R TE+ + T Sbjct: 500 AETMLNVRDGETIVLGGLLQEEDRRTKVTIPWLGDIPFLGNLLSSFKTQRVTTEVILTIT 559 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 P +V L P +AF+ Sbjct: 560 PHIV-----NSLRLPGP------QGQAFWSGT 580 >gi|296162480|ref|ZP_06845271.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. Ch1-1] gi|295887293|gb|EFG67120.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. Ch1-1] Length = 709 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 84/239 (35%), Gaps = 15/239 (6%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------GGKFVSEGGDFS 246 V + + +V + +G + + V+ G + + Sbjct: 354 VEIDAVVIDVSSSAARSLGVAWGGSNGRVSAASGTINSPLTFGAPALATAAGVASGLNLA 413 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 +HALE A R L+ P + ++ A TS + Sbjct: 414 TLVGNSAQYLFAQIHALEDAGQARVLSSPQVLTLNNMEAVLTSHSSVYVRVA--GNQDVD 471 Query: 307 VTTHDYGVVLHFTPTVLS----PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 + D G+ L TP++ S I L IQ + ++ +P T + Sbjct: 472 LYNIDTGLTLKVTPSIESAAEPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIV 531 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G ++++ G + + +P+L +P +GALFR+++ RE E I TP L + Sbjct: 532 RDGESLLVGGYQYERSESTTSKVPVLGDVPYVGALFRDTQTTRERLERLILITPRLKRA 590 >gi|331654572|ref|ZP_08355572.1| general secretion pathway protein D [Escherichia coli M718] gi|331047954|gb|EGI20031.1| general secretion pathway protein D [Escherichia coli M718] Length = 615 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 57/300 (19%), Positives = 105/300 (35%), Gaps = 44/300 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 >gi|296436215|gb|ADH18389.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis G/9768] gi|296438075|gb|ADH20236.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis G/11074] gi|297140576|gb|ADH97334.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis G/9301] Length = 921 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626 Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253 + +++ G G++ Sbjct: 627 KVAYASGLLSSTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686 Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 + +L AL++ + P + A Q ASF G ++T Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + ++ D GV L T T+ + L+I+ +SE P A T Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 866 SSFEEGTALSNTEGYR 881 >gi|167030895|gb|ABZ05763.1| HrcC [Pectobacterium carotovorum subsp. carotovorum] Length = 689 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 64/464 (13%), Positives = 136/464 (29%), Gaps = 61/464 (13%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L A+ + V+ + G I + N + + + V++ Sbjct: 144 ALSGIGLLDARFGWGELPEEGVVLV----TGPQAYIDLIRNFSQQREKQDERRKVMIFPL 199 Query: 75 TKADVVVHS----PRTMYLFGKNVGQANVI--LIGHDGKQML----NLDILIERDIAHLE 124 A V + + + + G A ++ L+ + + + + + Sbjct: 200 RYASVSDRTLQYRDQKVTI----PGVATILNELMDGQRSAPAGASGPMPVQPDNGMEAMR 255 Query: 125 MTLRRFI--------ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 + R + N V L G + ++ Sbjct: 256 DSTRSLMTRLATRNNPGRNGEAS---GRVTLSGKISAD---------VRNNALLIRDDEK 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 + ++++ +++ V + I +V R + ++ + + Sbjct: 304 RRAEYQQLVEHIDVPQNL-VNIDAIILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRST 362 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 FVS D F + ALE +A P++ + Q A Sbjct: 363 LFVS-----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAIVDFSRTAFIT 411 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI-GLRIQTEVSEPVIGVNAGDMPSYRVR- 354 + G L TP V+ G +++ ++ + + S R Sbjct: 412 AT--GERVADIQPVTAGTSLQVTPRVIGEGTQRSIQLVIDIEDGQVETGREGEASGVKRG 469 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T + +VL G ++ IP+L IP+LG LF ++R E Sbjct: 470 TVSTQALIGENRALVLGGFHVEESGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFIL 529 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 TP LV D + P + S + + +N++ + Sbjct: 530 TPHLV-----GDQTDPTRYVSSANRQQ--LNGAMNRVAQRNGKT 566 >gi|227328511|ref|ZP_03832535.1| type III secretion protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 689 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 64/464 (13%), Positives = 136/464 (29%), Gaps = 61/464 (13%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L A+ + V+ + G I + N + + + V++ Sbjct: 144 ALSGIGLLDARFGWGELPEEGVVLV----TGPQAYIDLIRNFSQQREKQDERRKVMIFPL 199 Query: 75 TKADVVVHS----PRTMYLFGKNVGQANVI--LIGHDGKQML----NLDILIERDIAHLE 124 A V + + + + G A ++ L+ + + + + + Sbjct: 200 RYASVSDRTLQYRDQKVTI----PGVATILNELMDGQRAAPAGASGPMPVQPDNGMEAMR 255 Query: 125 MTLRRFI--------ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 + R + N V L G + ++ Sbjct: 256 DSTRSLMTRLATRNNPGRNGEAS---GRVTLSGKISAD---------VRNNALLIRDDEK 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 + ++++ +++ V + I +V R + ++ + + Sbjct: 304 RRAEYQQLVEHIDVPQNL-VNIDAIILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRST 362 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 FVS D F + ALE +A P++ + Q A Sbjct: 363 LFVS-----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAIVDFSRTAFIT 411 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI-GLRIQTEVSEPVIGVNAGDMPSYRVR- 354 + G L TP V+ G +++ ++ + + S R Sbjct: 412 AT--GERVADIQPVTAGTSLQVTPRVIGEGTQRSIQLVIDIEDGQVETGREGEASGVKRG 469 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T + +VL G ++ IP+L IP+LG LF ++R E Sbjct: 470 TVSTQALIGENRALVLGGFHVEESGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFIL 529 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 TP LV D + P + S + + +N++ + Sbjct: 530 TPHLV-----GDQTDPTRYVSSANRQQ--LNGAMNRVAQRNGKT 566 >gi|300310140|ref|YP_003774232.1| type II/III HrcC transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300072925|gb|ADJ62324.1| type II/III HrcC transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 693 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 88/250 (35%), Gaps = 19/250 (7%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++N L++ QV ++ I ++ R L ++G + + + Sbjct: 328 LINQLDVK-PQQVEIEALIVDIDRSRLAEMGVEWGARAGVVNTTVNGTTTQSSGTDLPLP 386 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 ++ + D F L A+E R LA PT+ + +A + Sbjct: 387 GATLL-ISDAARFYARLKAMESNGEARVLATPTVLTLDNVAAVLDLSQSAYVSLI--GER 443 Query: 304 ATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPV------------IGVNAGDM 348 ++ G +L P ++ G R+ L + E + Sbjct: 444 VADMSDITAGTMLRVIPRIIDDGGQTRVRLEVDIEDGSLNNGNNDSGSNSSRGTGASTIA 503 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 S +T + + T+++ G + + + K+ +PLL +P++G LFR+ + Sbjct: 504 ASVTRSTINTQAIIDAQQTLMIGGYRAESLIRNKQKVPLLGDLPVVGGLFRSESRSNSTR 563 Query: 409 EIFIAATPFL 418 E TP + Sbjct: 564 ERLFLITPRI 573 >gi|261854769|ref|YP_003262052.1| general secretion pathway protein D [Halothiobacillus neapolitanus c2] gi|261835238|gb|ACX95005.1| general secretion pathway protein D [Halothiobacillus neapolitanus c2] Length = 725 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 95/490 (19%), Positives = 163/490 (33%), Gaps = 75/490 (15%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +L+ + L P A L ++N+ VI I + KKI +++ + V Sbjct: 158 HLRYVPAAPLLTVLRQIMPQQAALSVYPDSNSLVITDRAGNIDRLKKILAKVDQPAVGDV 217 Query: 63 PVDVQDVLVSDPTKADVVVH---------------------------------SPRTMYL 89 + +D + + ++ L Sbjct: 218 EIIRLKRASADSVVSTLKALFGASGGGGAKGAPVPGGGAGGNFSSVPAFAADDRTNSVLL 277 Query: 90 FGKNVGQANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 G V +A + I++ D Q + + R L + S Sbjct: 278 SGDAVSRAKMRAIILNLDMPQTNYGNTRVFRLKYANAEDLVDVLKGIVSTNGATSTGATA 337 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEV 205 T D+ + ++ L+ + + + V++ L+I QV ++ IAEV Sbjct: 338 TKEATTNPDNNQLEIAADKSLNALVVTASPSRMQTVESVIDQLDIR-RKQVLVEAIIAEV 396 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-------------- 251 + K++G Q + G SG + F G S + G Sbjct: 397 SNGVTKKLGTQF-LVGGGSGTVPIGISTFNGLLSSVASSAAQAGTGSVGSAIGLGLAGAL 455 Query: 252 -------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 F ++ AL + L+ P+L + Q AS G T Sbjct: 456 GDGGNIGVGRYGQGGADFALLVSALAGNSGNNILSTPSLLTLDNQEASIVVGQNIPIVTG 515 Query: 299 SS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 S + ++T D GV L TPT+ G + L+I+ EVS + Sbjct: 516 SYAQTGSATSPTNPFQTITREDIGVKLKVTPTISPDGTVRLKIEQEVSSLDSAAQSSAGL 575 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R TTV++ G +VL GL+ D ++ +P L IPILG LFR + + Sbjct: 576 ITNKRNVTTTVQVDDGDVVVLGGLIDDSTNSNQQSVPGLGDIPILGNLFRYRSASTNKRN 635 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 636 LMIFIRPLIV 645 >gi|254447525|ref|ZP_05060991.1| type II and III secretion system protein [gamma proteobacterium HTCC5015] gi|198262868|gb|EDY87147.1| type II and III secretion system protein [gamma proteobacterium HTCC5015] Length = 506 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 95/260 (36%), Gaps = 24/260 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++ + G QV ++ T+ E+ Q G + + + S Sbjct: 232 GFVDRVVERGRRQVLIEATVVEIDLSQSYQAGVDWQRVMNGGEWTLQQSMTKPSLAASPM 291 Query: 243 GDFSVKGVLDRFSFE-TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---- 297 + R S + LE+ + + P + A++ Q + + +Y T Sbjct: 292 TLLAQHEKQSRDSVTRAAVTLLEQFGDVNVHSRPRIVALNNQPSLLKVIDKRVYFTLDVQ 351 Query: 298 -------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------ 344 ++ST T + T G + TP V + L ++ +S V+ Sbjct: 352 NTTASGGATTSTVETHINTLPVGFTMSVTPFVTQSD-VTLSVRPSLSRITRFVDDPSPAL 410 Query: 345 -----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +P VR+ +T + L T ++ GL+++ + +P+LS+IP LG LF+ Sbjct: 411 AAEGIVSRVPEVEVREMETLLRLDGEQTALIGGLMQERRSEEHYAVPVLSRIPWLGELFK 470 Query: 400 NSRFNREETEIFIAATPFLV 419 ++E+ I V Sbjct: 471 GREERWNKSELVILLRARRV 490 >gi|323941937|gb|EGB38116.1| general secretion pathway protein D [Escherichia coli E482] Length = 615 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 57/300 (19%), Positives = 105/300 (35%), Gaps = 44/300 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 >gi|2897962|gb|AAC38377.1| EscC [Escherichia coli] Length = 512 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + + Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQVNISSSVISNA 327 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F ++AL++ + + L++P++ ++ A K S S+ + G Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLRSITSG 385 Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358 +L TP +L L ++ + +P + + T Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505 Query: 419 VKPVAMR 425 +K + Sbjct: 506 IKSASSE 512 >gi|319791845|ref|YP_004153485.1| general secretion pathway protein d [Variovorax paradoxus EPS] gi|315594308|gb|ADU35374.1| general secretion pathway protein D [Variovorax paradoxus EPS] Length = 770 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 28/264 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------- 240 QV ++ I EV + G Q ++ + ++ ++ Sbjct: 414 GRRAQVMIEALIVEVSANKAANFGVQWQSALGNNAVIGTNSSLNRNNILALTQALATRNP 473 Query: 241 --------EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + + G + + + L+ P L + + A G Sbjct: 474 AGLASSIQPGLNLGIAGKIGGQYILGAIANFFNSDGDANVLSTPNLLTLDNEEAKIIIGQ 533 Query: 292 QHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IG 342 + T S + T+V D G+ L PT+ G + + I E S Sbjct: 534 NVPFPTGSYASTSGSVGVNPFTTVERKDVGLTLRVRPTINENGTVRMTIFQETSTVDQNS 593 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + P+ R +++V + GG ++L GLL D E IPL IP+LG LF+N Sbjct: 594 LANPNGPTTNKRSIESSVLVEDGGLVMLGGLLSDTYNNNIEKIPLAGDIPVLGNLFKNEN 653 Query: 403 FNREETEIFIAATPFLVKPVAMRD 426 R ++ + + P +++ A + Sbjct: 654 RTRNKSNLMMFLRPAVMRDGASTE 677 >gi|323946657|gb|EGB42679.1| general secretion pathway protein D [Escherichia coli H120] Length = 615 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 57/300 (19%), Positives = 105/300 (35%), Gaps = 44/300 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 >gi|332526236|ref|ZP_08402367.1| type III secretion outer membrane pore, YscC/HrcC family protein [Rubrivivax benzoatilyticus JA2] gi|332110072|gb|EGJ10700.1| type III secretion outer membrane pore, YscC/HrcC family protein [Rubrivivax benzoatilyticus JA2] Length = 318 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 89/262 (33%), Gaps = 15/262 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------- 242 + ++ I ++ D L+++G ++ S + Sbjct: 60 PQALEIEARIVDIDTDRLRELGINWRLSSGRSSLLFGNGTNSDTLLSGSQRPEDITPQGK 119 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G F + ++AL+ A + ++ P + +S A F + + Sbjct: 120 GGFLSAVLGGADELALRINALQDQGAAKVVSSPQVLTLSDVEAVFDTSRTFYVRVAGRED 179 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTV 360 + + G L TP V + +++ + + +P +T Sbjct: 180 --VDLFSVSAGTTLRVTPHVFRDEHGVRIKLLVAIEDGALSQQQVDQIPVVERASINTQA 237 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++ GL ++ +P L IP+LG LF++S + TE +P LV Sbjct: 238 LIFEGESLLVGGLTREASSNGVTKVPFLGDIPVLGNLFKSSVDSLRRTERLFLISPRLV- 296 Query: 421 PVAMRDLSRPDDHYSVEDDAKA 442 P + P+ + + Sbjct: 297 PARRVAATAPEGAAPPATENRR 318 >gi|51103131|gb|AAT96274.1| hrcC [Pseudomonas viridiflava] Length = 753 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 92/274 (33%), Gaps = 16/274 (5%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G ++ + + ++ + + + + V L + V + I ++ R Sbjct: 336 SGESKSNSNRRVVADVRNNAVLIYDDPEKRETYQQLVQQLDQ--PSNLVEIDAVILDIDR 393 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L + + S S S G S + D F + ALE Sbjct: 394 SQLSSLESRWSARAGSVNFGSSLL----------TGGSSTLFINDFDRFFADIQALEGQG 443 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P++ + Q A T +V G L P ++ + Sbjct: 444 VASVIARPSVLTLENQPAVIDFSRTAYITTT--GERVANVQPVTAGTSLRVIPRTIAGEQ 501 Query: 328 IG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 ++ ++ + + D P + T + ++V+ G D+ + ++ + Sbjct: 502 PNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKV 561 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P+L +P++GALF + R E TP LV Sbjct: 562 PILGSLPVIGALFTSKRHEVSRRERLFILTPRLV 595 >gi|34500885|gb|AAQ73913.1| HrcC [Pectobacterium carotovorum subsp. carotovorum] Length = 689 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 64/464 (13%), Positives = 137/464 (29%), Gaps = 61/464 (13%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L A+ + V+ + G I + N + + + V++ Sbjct: 144 ALSGIGLLDARFGWGELPEEGVVLV----TGPQAYIDLIRNFSQQREKQDERRKVMIFPL 199 Query: 75 TKADVVVHS----PRTMYLFGKNVGQANVI--LIGHDGKQML----NLDILIERDIAHLE 124 A V + + + + G A ++ L+ + + + + + Sbjct: 200 RYASVSDRTLQYRDQKVTI----PGVATILNELMDGQRAAPAGASGPMPVQPDNGMEAMR 255 Query: 125 MTLRRFI--------ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 + R + N V L G + ++ Sbjct: 256 DSTRSLMTRLATRNNPGRNGEAS---GRVTLSGKISAD---------VRNNALLIRDDEK 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 + ++++ +++ V + I +V R + ++ + + Sbjct: 304 RRAEYQQLVEHIDVPQNL-VNIDAIILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRST 362 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 FVS D F + ALE +A P++ + Q A Sbjct: 363 LFVS-----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAIVDFSRTAFIT 411 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGDMPSYRVR- 354 + G L TP V+ G + +++ ++ + + S R Sbjct: 412 AT--GERVADIQPVTAGTSLQVTPRVIGEGAQRSIQLVIDIEDGQVETGREGEASGVKRG 469 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T + +VL G ++ IP+L IP+LG LF ++R E Sbjct: 470 TVSTQALIGENRALVLGGFHVEESGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFIL 529 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 TP LV D + P + S + + +N++ + Sbjct: 530 TPHLV-----GDQTDPTRYVSSANRQQ--LNGAMNRVAQRNGKT 566 >gi|312972778|ref|ZP_07786951.1| general secretion pathway protein D [Escherichia coli 1827-70] gi|310332720|gb|EFP99933.1| general secretion pathway protein D [Escherichia coli 1827-70] Length = 613 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 105/300 (35%), Gaps = 44/300 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ ++ Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKK 612 >gi|323173796|gb|EFZ59425.1| general secretion pathway protein D [Escherichia coli LT-68] Length = 613 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 105/300 (35%), Gaps = 44/300 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + S + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 ++S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ ++ Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKK 612 >gi|51103173|gb|AAT96315.1| HrcC [Pseudomonas viridiflava] Length = 753 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 92/274 (33%), Gaps = 16/274 (5%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G ++ + + ++ + + + + V L + V + I ++ R Sbjct: 336 SGESKSNSNRRVVADVRNNAVLIYDDPEKRETYQQLVQQLDQ--PSNLVEIDAVILDIDR 393 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L + + S S S G S + D F + ALE Sbjct: 394 SQLSSLESRWSARAGSVNFGSSLL----------TGGSSTLFINDFDRFFADIQALEGQG 443 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P++ + Q A T +V G L P ++ + Sbjct: 444 VASVIARPSVLTLENQPAVIDFSRTAYITTT--GERVANVQPVTAGTSLRVIPRTIAGEQ 501 Query: 328 IG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 ++ ++ + + D P + T + ++V+ G D+ + ++ + Sbjct: 502 PNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKV 561 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P+L +P++GALF + R E TP LV Sbjct: 562 PILGSLPVIGALFTSKRHEVSRRERLFILTPRLV 595 >gi|182678562|ref|YP_001832708.1| general secretion pathway protein D [Beijerinckia indica subsp. indica ATCC 9039] gi|182634445|gb|ACB95219.1| general secretion pathway protein D [Beijerinckia indica subsp. indica ATCC 9039] Length = 801 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 9/239 (3%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--FSVK 248 QV ++VT+AEV G Q + S+ +A + Sbjct: 540 RPPVQVEIEVTVAEVTLTDALNYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNL 599 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--- 305 + + V++AL T ++ L+ P+L + Q A G Q + +++ T Sbjct: 600 MIGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANP 659 Query: 306 ----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 SV D G++L+ P V + G + L I+ ++S P+ R+ +T+ Sbjct: 660 AIVNSVDYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIA 719 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P+G T++LAGL+++ + G+P++SKI L L N + TE+ + P +++ Sbjct: 720 IPNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILR 778 >gi|34498087|ref|NP_902302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC 12472] gi|34103942|gb|AAQ60302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC 12472] Length = 561 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 62/415 (14%), Positives = 134/415 (32%), Gaps = 41/415 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + + +G K+ ++++ V D T + + + Sbjct: 155 DLVVNAASMMDKQSDGLELGRQKIGVVRLGNT----FVGDRTY----DLRDQKIVI---- 202 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A VI L+ + K + L A + R + L + Sbjct: 203 PGMATVIEKLLDGERKPVAGL----APPAAEKRDDIPAMPDFKEGRGLPYQAGLSLPEAL 258 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + + L++A V L + I ++++D Sbjct: 259 KRDAAAGDIKVIAYPDTNSLLVKGTAEQVRFIENLARALDVAKRH-VELSLWIIDLQKDD 317 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L Q+G S + G +++ G S LD F + A+ Sbjct: 318 LDQLGVNWS--------GSVTVGNKLGVTLNQAGSLS---TLDGTRFLAAVMAMTSKKKA 366 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P + A F + K + + YG ++ P + G+I Sbjct: 367 NVVSRPVVLTQENIPAIFDNNRTFYAKL--EGERSVDLQHVTYGTLISVLPRFAADGQIE 424 Query: 330 LRIQTEV------SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + + E + +P + T +P G ++++ G +D ++ + Sbjct: 425 MSLSIEDGSQARAPDYSSDNKDAGLPEVGRTRISTVARVPQGKSLLIGGFTRDASERGEG 484 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRDLSRPDDHYSVE 437 +PLL +P++G LFR + T P + + D Sbjct: 485 KVPLLGDLPLVGGLFRYQSAKQTNTVRVFLIQPREIDDALTPDASDLSADLVRRA 539 >gi|269963152|ref|ZP_06177487.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832116|gb|EEZ86240.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 623 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 111/308 (36%), Gaps = 37/308 (12%) Query: 146 VLHGMVRTIQDSQRAVE-----LSETFLSQSGRNQYANSSSKKVMNLLNIAGED------ 194 VL G V+T + + E + T + A+ ++ +N + + Sbjct: 222 VLSG-VQTQIKATKESEETDINTAATTTKNVSVHAGASVEAEPGLNAIIVRDTQARLPLY 280 Query: 195 ----------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFV 239 Q ++V +I ++ + L Q+G S G G V Sbjct: 281 RKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSILDIKTTGDVDGGDV 340 Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G + K +LD + + LE + + ++ PTL A + K Sbjct: 341 TLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVK 400 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSY 351 + T A + YG +L P ++ I L + E + D+PS Sbjct: 401 LIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSI 458 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R + T + G ++++ G+ +D++ +PLL IP LGALFR++ T Sbjct: 459 RKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRM 518 Query: 412 IAATPFLV 419 P +V Sbjct: 519 FIIEPRIV 526 >gi|50508104|dbj|BAD30080.1| outer-membrane protein of Hrp(typeIII) secretion pathway [Pseudomonas syringae pv. tabaci] Length = 699 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 88/265 (33%), Gaps = 16/265 (6%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R +K++ L+++ + + + I ++ R+ L ++ + + Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S G + + G S + + F LHALE + + P++ Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSIL 393 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A S ++ G L P L ++ L + E Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLSVDIE 451 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + I PS R T + G++V+ G + IPLL IP +G Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511 Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419 LF++ + E TP L+ Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536 >gi|91782693|ref|YP_557899.1| putative type III secretion hypersensitivity response secretion protein, HrcC/HrpA1- like [Burkholderia xenovorans LB400] gi|91686647|gb|ABE29847.1| Putative type III secretion hypersensitivity response secretion protein, HrcC/HrpA1- like protein [Burkholderia xenovorans LB400] Length = 736 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 82/238 (34%), Gaps = 15/238 (6%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------GGKFVSEGGDFS 246 V + + +V + +G + S ++ G + + Sbjct: 354 VEIDAVVIDVSSSAARSLGVAWGGSNGRISGSSGTINSPLTFGAPALATAAGMASGLNLA 413 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 +HALE A R L+ P + ++ A TS + Sbjct: 414 TLVGNSAQYLFAQIHALEDAGQARVLSSPQVLTLNNMEAVLTSHSSVYVRVA--GNQDVD 471 Query: 307 VTTHDYGVVLHFTPTV----LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 + D G+ L TP++ I L IQ + ++ +P T + Sbjct: 472 LYNIDTGLTLKVTPSIESAADPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIV 531 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G ++++ G + + +P+L +P LG LFR+++ RE E I TP L + Sbjct: 532 RDGESLLVGGYQYERSESTTSKVPVLGDVPYLGVLFRDTQTTRERLERLILITPRLKR 589 >gi|297538911|ref|YP_003674680.1| type II and III secretion system protein [Methylotenera sp. 301] gi|297258258|gb|ADI30103.1| type II and III secretion system protein [Methylotenera sp. 301] Length = 638 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 18/240 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V L++ + EV+R L+ +G + + K + G+ V + Sbjct: 329 VMLELQVMEVKRSYLQNLGVN---PITGISVPVPSSGILTVKDLRVSGNSLVVNGIPGLV 385 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDY 312 F+ + + LA P + + +A G + T + ++ + +V D Sbjct: 386 FDA------TSGDVNLLANPKIRVKNKDTARIHIGEKVPVFTANVASTGVTSQTVQYIDA 439 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGG 366 G+ L PT+ + + ++I V G + R A T + L G Sbjct: 440 GLKLEVEPTISAADDVTIKINLNVGSIGDKVVASSGASQSIAFRVGTRLATTQLRLHDGE 499 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T +LAGL+ D ++ GIP LSKIP+LG LF N ++ +TEI ++ TP +++ + Sbjct: 500 TQILAGLIDDQDRKNVSGIPGLSKIPLLGKLFSNQTDDKVKTEIVLSITPHIIRQRTPQQ 559 >gi|330895850|gb|EGH28136.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. japonica str. M301072PT] Length = 640 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 16/265 (6%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R + +K++ L+++ + + + I ++ R+ L ++ + + Sbjct: 225 RVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 283 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S GG + + G S + + F LHALE + + P++ Sbjct: 284 FNAGSVN---------GGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSIL 334 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A S ++ G L TP L ++ L + E Sbjct: 335 TLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIE 392 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + I PS R T + G++V+ G + +PLL IP +G Sbjct: 393 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVG 452 Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419 LF++ + E TP L+ Sbjct: 453 KLLFQSRSRELSQRERLFILTPRLI 477 >gi|114330532|ref|YP_746754.1| type II and III secretion system protein [Nitrosomonas eutropha C91] gi|114307546|gb|ABI58789.1| type II and III secretion system protein [Nitrosomonas eutropha C91] Length = 767 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 85/422 (20%), Positives = 147/422 (34%), Gaps = 59/422 (13%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P E + I + I+ ++ + + V D + DV Sbjct: 187 PITMEFRDTSLKAIFELISRTAGINFVFDRNVQ---QEATASMFVRDNSIEDVLKLLLLT 243 Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 V + T+ ++ + + ++ + D+ + +R + Sbjct: 244 NQLAYKVLNSNTLLIYPDTPAK-----QKDYQELVVRSFHVANTDVKQMVAMIRGLVKAR 298 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 +I V + V+ + + L E ++ + Sbjct: 299 DIYVNEKLNLFVIRDTL-------EMIRLVERLVAINDFPDPE----------------- 334 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLDR 253 V L V + EV+RD ++G + + S P A V + G Sbjct: 335 -VMLDVVVLEVKRDNTLELGPNMPTSVTFSAIPGVGAPAQAAADSVVKMSMIKNAGFEGL 393 Query: 254 FSFE----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306 SF + T LA P + S + A G + TV+++ A S Sbjct: 394 RSFTISNQAKIDFGRTLTNADVLANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAAS 453 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTV 360 T D G+ P V + + L+ EVS G NA R A+T + Sbjct: 454 ATYIDVGLKFEVEPVVRTNNEVTLKALLEVSSNLGEKRSGGGDNAATAIVIGTRTAETVL 513 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL G T VLAGL++DD+ ++K GI L++IPILG +F +TEI + TP +++ Sbjct: 514 ELRDGETQVLAGLIQDDLSRVKSGIAGLTEIPILGDIFSKQVRKHNKTEIILLITPHIIR 573 Query: 421 PV 422 V Sbjct: 574 NV 575 >gi|313142359|ref|ZP_07804552.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131390|gb|EFR49007.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 505 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 97/280 (34%), Gaps = 34/280 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSK 228 + + L+ + QV + V I + + G G+S G + Sbjct: 217 ESYIQSLHQRLQKQVLIDVHILSITHNNTNTTGINWDELYNLQNLIIPAFGEGASFGGNG 276 Query: 229 SFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G V + G ++ ++ S ++ LE + +++ P + ++ Q Sbjct: 277 EVGNTSGINIVGQKGVSNLHYGINIFSQGLSLNRIIEFLESYGKVESISNPKVLTLNNQP 336 Query: 285 ASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 A + G Q+ + + + GV+L TP ++ I L+I Sbjct: 337 AMISVGDILRYQKNTIYQNTNAQTTLTNTDNEYPSLFAGVLLDITP-LVFGEEIMLKINP 395 Query: 335 EVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 +++ P+ + + V + + ++L GL+ + + IP+L Sbjct: 396 SITKTKENRTEIPNTAFETPPNLTTNQLSSIVSVKNNQKVILGGLISKNFATKENKIPIL 455 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 IP++ LF S+ EI P +++ L Sbjct: 456 GSIPLIKPLFSYSQEVENTEEIVFIIEPKIIQAQDSISLE 495 >gi|269105039|ref|ZP_06157734.1| type III secretion system outer membrane pore YscC [Photobacterium damselae subsp. damselae CIP 102761] gi|268160674|gb|EEZ39172.1| type III secretion system outer membrane pore YscC [Photobacterium damselae subsp. damselae CIP 102761] Length = 624 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 111/308 (36%), Gaps = 37/308 (12%) Query: 146 VLHGMVRTIQDSQRAVE-----LSETFLSQSGRNQYANSSSKKVMNLLNIAGED------ 194 VL G V+T + + E + T + A+ ++ +N + + Sbjct: 222 VLSG-VQTQIKATKESEETDINTAATTTKNVSVHGGASVEAEPGLNAIIVRDTQARLPLY 280 Query: 195 ----------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFV 239 Q ++V +I ++ + L Q+G + S G G V Sbjct: 281 RKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGIAVGNNSILDIKTTGDVDGGDV 340 Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G + K +LD + + LE + + ++ PTL A + K Sbjct: 341 TLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVK 400 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSY 351 + ++ YG +L P ++ I L + E + ++PS Sbjct: 401 LIGRE--IAALEKVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDNVPSI 458 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R + T + G ++++ G+ +D++ +PLL IP LGALFRN+ T Sbjct: 459 RKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRNTTDTTRRTVRM 518 Query: 412 IAATPFLV 419 P +V Sbjct: 519 FIIEPRIV 526 >gi|325917024|ref|ZP_08179263.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937] gi|325536775|gb|EGD08532.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937] Length = 606 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 52/336 (15%), Positives = 106/336 (31%), Gaps = 21/336 (6%) Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G + + + + + V G D+ Sbjct: 276 WFGGGSPSDRVPVSPPLPGSGGTNAPASVWPEMSP-ARRDGPLAVDTGGGEPASDAPVIE 334 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT- 220 T ++ ++ L+ + + TI E+R ++ +G Sbjct: 335 ADPRTNSILIRDRPERMAAYGTLIQQLDNR-PKLLQIDATIIEIRDGAMQDLGVDWRFHS 393 Query: 221 -----------GSSSGPSKSFAADFGGKFVSE-GGDFSVKGVLDRFSFETVLHALERATA 268 G G + + S GG + T + ALE+ Sbjct: 394 RRVDVQTGDGRGGQLGYDGTLSGAAAAGATSPLGGTLTAVLGDAGRYLMTRVSALEQTNK 453 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SP 325 + ++ P + + A Q + ++ + GV L P+V+ S Sbjct: 454 AKIVSTPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVSLRVLPSVVPGSSN 511 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G++ L ++ E + +P + T + G ++++AG D Q + Sbjct: 512 GQMRLDVRIEDGQL-GANTVDGIPVITSSEITTQAFVNEGQSLLIAGYASDTDQTDLNKV 570 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 P LSKIP++G LF++ + + + TP +V P Sbjct: 571 PGLSKIPLIGNLFKHRQQSGSRLQRLFLLTPHIVSP 606 >gi|330957480|gb|EGH57740.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. maculicola str. ES4326] Length = 703 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 59/405 (14%), Positives = 130/405 (32%), Gaps = 42/405 (10%) Query: 45 GKGKKISIGLNKVIILQVPV--DVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQAN 98 G K + + + ++ P D QD++V A + + + + G + Sbjct: 148 GPAKYVELVRDYSKKVETPEKGDKQDIIVFPLKYASAADRTIRYRDQELVVAGVASILQD 207 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLR--RFIADSNIRVEMVSDTVVLHGMVR---- 152 ++ + G+ + D++ ++ + + ++ + G+ + Sbjct: 208 LLDVRSRGQSIKGTDLIGRGGRGTGGLSGGDGQDTPSLPLNASGINTGALEQGLDQVLHY 267 Query: 153 --------------TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + + R + +K++ L+++ + + + Sbjct: 268 GSGGGGKSSGKSRSGGRATIRVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEI 326 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 I ++ R+ L ++ + + S G + + G S + + F Sbjct: 327 DAVILDIDRNELAELSSRWNFNAGSVGGGVNMF---------DAGTTSTMFIQNAGKFTA 377 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 LH LE + + P++ + Q A S ++ G L Sbjct: 378 ELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQV 435 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 TP L ++ L + E + I PS R T + G++V+ G Sbjct: 436 TPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHG 495 Query: 376 DDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419 + IPLL IP +G LF++ E TP L+ Sbjct: 496 LEANDKVHKIPLLGDIPYIGKLLFQSRSRELSNRERLFILTPRLI 540 >gi|330984958|gb|EGH83061.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. lachrymans str. M301315] Length = 703 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 58/405 (14%), Positives = 128/405 (31%), Gaps = 42/405 (10%) Query: 45 GKGKKISIGLNKVIILQVPV--DVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQAN 98 G K + + + + P D QD++V A + + + + G + Sbjct: 148 GPAKYVELVRDYSKKVDTPEKDDKQDIIVFPLKYASAADRTIRYRDQELVVAGVASILQD 207 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLR--RFIADSNIRVEMVSDTVVLHGMVR---- 152 ++ + G+ + D++ ++ + + ++ + G+ + Sbjct: 208 LLDVRSRGQSIKGTDLIGRGGRGTGGLSGGDGQDTPSLPLNASGINTGALEQGLDQVLHY 267 Query: 153 --------------TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + + R +K++ L+++ + + + Sbjct: 268 GSGGGGKSSGKSRSGGRATIRVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEI 326 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 I ++ R+ L ++ + + S G + + G S + + F Sbjct: 327 DAVILDIDRNELAELSSRWNFNAGSVGGGVNMF---------DAGTTSTMFIQNAGKFTA 377 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 LH LE + + P++ + Q A S ++ G L Sbjct: 378 ELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQV 435 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 TP L ++ L + E + I PS R T + G++V+ G Sbjct: 436 TPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHG 495 Query: 376 DDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419 + +PLL IP +G LF++ E TP L+ Sbjct: 496 LEANDKVHKVPLLGDIPYIGKLLFQSRSRELSNRERLFILTPRLI 540 >gi|22127358|ref|NP_670781.1| hypothetical protein y3484 [Yersinia pestis KIM 10] gi|108809090|ref|YP_653006.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua] gi|108810716|ref|YP_646483.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516] gi|145597787|ref|YP_001161863.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F] gi|167466374|ref|ZP_02331078.1| hypothetical protein YpesF_00430 [Yersinia pestis FV-1] gi|229837375|ref|ZP_04457538.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|229840587|ref|ZP_04460746.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842863|ref|ZP_04463015.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229900911|ref|ZP_04516035.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|294502759|ref|YP_003566821.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003] gi|21960442|gb|AAM87032.1|AE013951_7 hypothetical [Yersinia pestis KIM 10] gi|108774364|gb|ABG16883.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516] gi|108781003|gb|ABG15061.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua] gi|145209483|gb|ABP38890.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F] gi|229682250|gb|EEO78342.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|229690130|gb|EEO82187.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229696953|gb|EEO87000.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705498|gb|EEO91508.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|262360791|gb|ACY57512.1| hypothetical protein YPD4_0603 [Yersinia pestis D106004] gi|262364736|gb|ACY61293.1| hypothetical protein YPD8_0603 [Yersinia pestis D182038] gi|294353218|gb|ADE63559.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003] gi|320016744|gb|ADW00316.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 284 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 24/272 (8%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 K+I + + I++V ++ V VS AD + ++ ++ K G A Sbjct: 26 FENSANAKQIYLPIGGSHIIKVQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 85 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + + + +L+ I +R DS I + + ++ +L G T + Sbjct: 86 LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 145 Query: 161 VELSETFLSQS-----GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 + + + +N + V+N + + +QV +K+TI E+ +D + IG Sbjct: 146 ASIVGEATASKKEKERETSYQSNPEYQGVINKIKLPQANQVNVKLTIVEITKDFTENIGL 205 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + S++G + + S T++HA+ + LAEP Sbjct: 206 DWNSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEP 246 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 L+ +SG+ ASF GG+ + + + + + Sbjct: 247 NLSVLSGEYASFLVGGEIPIVSTNQNGISVEL 278 >gi|224418841|ref|ZP_03656847.1| putative type II secretion system D [Helicobacter canadensis MIT 98-5491] gi|253828170|ref|ZP_04871055.1| secretion system protein [Helicobacter canadensis MIT 98-5491] gi|253511576|gb|EES90235.1| secretion system protein [Helicobacter canadensis MIT 98-5491] Length = 496 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 97/280 (34%), Gaps = 34/280 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSK 228 + + L+ + QV + V I + + G G+S G + Sbjct: 208 ESYIQSLHQRLQKQVLIDVHILSITHNNTNTTGINWDELYNLQNLIIPAFGEGASFGGNG 267 Query: 229 SFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G V + G ++ ++ S ++ LE + +++ P + ++ Q Sbjct: 268 EVGNTSGINIVGQKGVSNLHYGINIFSQGLSLNRIIEFLESYGKVESISNPKVLTLNNQP 327 Query: 285 ASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 A + G Q+ + + + GV+L TP ++ I L+I Sbjct: 328 AMISVGDILRYQKNTIYQNTNAQTTLTNTDNEYPSLFAGVLLDITP-LVFGEEIMLKINP 386 Query: 335 EVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 +++ P+ + + V + + ++L GL+ + + IP+L Sbjct: 387 SITKTKENRTEIPNTAFETPPNLTTNQLSSIVSVKNNQKVILGGLISKNFATKENKIPIL 446 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 IP++ LF S+ EI P +++ L Sbjct: 447 GSIPLIKPLFSYSQEVENTEEIVFIIEPKIIQAQDSISLE 486 >gi|77458214|ref|YP_347719.1| type II and III secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77382217|gb|ABA73730.1| putative general secretion pathway protein D [Pseudomonas fluorescens Pf0-1] Length = 615 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 65/424 (15%), Positives = 146/424 (34%), Gaps = 54/424 (12%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 P E A + + + ++ +K + + + V D D V + Sbjct: 183 PVTLEFRDANLKTIFEVLSQVAGLNFIFDKDLRPDMK---ATIFVRDVRIEDAVQLLLQQ 239 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLD--ILIERDIAHLEM-----TLRRFIADSNIRVE 139 L K V + +++ +++ + ++ + ++ ++ + ++ V+ Sbjct: 240 NQLHQKVVNENTLLIFPDSPQKLKDYQELVMRTFYLTSIDANTALNMIKTMLKTRDVFVD 299 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 +T+ + ++ +++ ++ + + + + + Sbjct: 300 ERLNTLTMRDTEDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATQRI-------------- 345 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 +G Q T S + + + + S + Sbjct: 346 -----------LDLGLQWPNTFGVVNSDGSAVT-----ILDQLKGINSSRISISPSPQAK 389 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDYG 313 ++A + I TLA P + + + A G + + SVT D G Sbjct: 390 INA--QDNDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVG 447 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + L PTV + ++I EVS R A T++ L G T +L Sbjct: 448 LKLEVQPTVHLNNEVAIKIALEVSNATPLEPTRQGTIPVQVDTRNAQTSLRLHDGETQIL 507 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV---AMRDL 427 AGL+++D IP L IP LG LF +++ ++E+ ++ TP +V+ + + D+ Sbjct: 508 AGLMRNDHGATGNKIPGLGDIPGLGRLFGSNKDTIGKSELVLSITPRIVRNLPYQSPSDM 567 Query: 428 SRPD 431 P Sbjct: 568 EFPT 571 >gi|253688577|ref|YP_003017767.1| type III secretion outer membrane pore, YscC/HrcC family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755155|gb|ACT13231.1| type III secretion outer membrane pore, YscC/HrcC family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 689 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 63/452 (13%), Positives = 135/452 (29%), Gaps = 37/452 (8%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L A+ + V+ + G I + N + + + V++ Sbjct: 144 ALSGIGLLDARFGWGELPEEGVVLV----TGPQAYIDLIRNFSQQREKQDERRKVMIFPL 199 Query: 75 TKADVVVHS----PRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLR 128 A V + + + + G A ++ L+ + +R Sbjct: 200 RYASVSDRTLQYRDQKVTI----PGVATILNELMDGQRAAPAGASGPMPVQPDTGMEAMR 255 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 R+ ++ + S + ++ + +++++ + Sbjct: 256 DSTRSLMTRLATRNNPGRSGDASSRVTLSGKISADVRNNALLIRDDEKRRAEYQQLVDHI 315 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 ++ V + I +V R L ++ + + FVS Sbjct: 316 DVPQNL-VNIDAIILDVDRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-------- 366 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 D F + ALE +A P++ + Q A + Sbjct: 367 ---DFKRFFADIQALEGEGTASIVANPSVLTLENQPAIVDFSRTAFITAT--GERVADIQ 421 Query: 309 THDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGG 366 G L TP V+ G + +++ ++ + + S R T + Sbjct: 422 PVTAGTSLQVTPRVVGEGAQRSIQLVIDIEDGQVETGREGEASGVKRGTVSTQALIGENR 481 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +VL G ++ IP+L IP+LG LF ++R E TP LV D Sbjct: 482 ALVLGGFHVEESGDRDRRIPILGDIPLLGKLFTSTRHEVSRRERLFILTPHLV-----GD 536 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 + P + S + + +N++ + Sbjct: 537 QTDPTRYVSSANRQQ--LNGAMNRVAQRNGKT 566 >gi|257487241|ref|ZP_05641282.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. tabaci ATCC 11528] gi|238577781|gb|ACR46692.1| HrcC [Pseudomonas syringae pv. tabaci] gi|331009145|gb|EGH89201.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 699 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 88/265 (33%), Gaps = 16/265 (6%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R +K++ L+++ + + + I ++ R+ L ++ + + Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S G + + G S + + F LHALE + + P++ Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSIL 393 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A S ++ G L P L ++ L + E Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + I PS R T + G++V+ G + IPLL IP +G Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511 Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419 LF++ + E TP L+ Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536 >gi|313200626|ref|YP_004039284.1| type II and iii secretion system protein [Methylovorus sp. MP688] gi|312439942|gb|ADQ84048.1| type II and III secretion system protein [Methylovorus sp. MP688] Length = 645 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 59/353 (16%), Positives = 133/353 (37%), Gaps = 32/353 (9%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + T+ ++ + + + L + ++ + ++ ++ Sbjct: 254 KVLNDNTLMIYP-------LSRSQEYQEMYVRSFYLGNTEAKKAMNMIKTVVKSKDVYID 306 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 +T+V+ I+ +++ + + + +++ + + I V++ Sbjct: 307 EKLNTLVMRDTPEAIRTAEKLIMSQDMAEPEVVLEVEVLEINRRSLEAIGIRYPSAVSV- 365 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 + G + + + S GV Sbjct: 366 ------------------GVQGRDTVNGTTTLSPGELTVRELKNFNSDLGVFSISDPVLA 407 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVL 316 L+ L++ T LA P + + + A G + T +++ + SV+ + G+ L Sbjct: 408 LNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLTSIANSTGFVSQSVSYIEVGIKL 467 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 PTVL + +++ EVS + + R A+T + L +G T VLAGL Sbjct: 468 DVEPTVLLNDEVSIKVGLEVSNQTDKITSSSGTVTYTIGTRNANTMLRLKNGETQVLAGL 527 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L+DD Q++ +P L+ +P++G LF + +R + EI + TP ++ + D Sbjct: 528 LRDDEQKISNKVPGLANLPLIGKLFTDRNTDRTKKEIALLITPRIISNITPAD 580 >gi|312881261|ref|ZP_07741059.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309371153|gb|EFP98607.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 489 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 17/246 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++ L+++ + + + VTI +V Q+G S G S SF S Sbjct: 252 SLIKQLDVS-PEMIEVSVTIIDVDTSDFNQLGIDWSAAAKIGGGSISFNQG------SMS 304 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D + + +F L+ALE+ + + L+ P++ ++ A K Sbjct: 305 SDNFSTVIGNTGNFMVRLNALEQNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKV--EGE 362 Query: 303 GATSVTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGV-----NAGDMPSYRVR 354 + + G +L TP +++ R+ L + + + +P Sbjct: 363 KVAKLESVTTGSLLRVTPRIVNEKHHQRVMLSLNIQDGQQTGQQKKAIGTNDALPQVENS 422 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + T L +G +++L G ++D + ++ IPLL IP+LG LFR++ + + Sbjct: 423 EIATQATLKTGESLLLGGFVQDKNKTVENKIPLLGDIPLLGGLFRSTNHSTQSVMRLFLI 482 Query: 415 TPFLVK 420 VK Sbjct: 483 KAEPVK 488 >gi|289623690|ref|ZP_06456644.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647636|ref|ZP_06478979.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. aesculi str. 2250] gi|298485943|ref|ZP_07004018.1| type III secretion system outer membrane pore protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|37931591|gb|AAP72286.1| HrcC [Pseudomonas savastanoi] gi|298159529|gb|EFI00575.1| type III secretion system outer membrane pore protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330871294|gb|EGH06003.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 699 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 88/265 (33%), Gaps = 16/265 (6%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R +K++ L+++ + + + I ++ R+ L ++ + + Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S G + + G S + + F LHALE + + P++ Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSIL 393 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A S ++ G L P L ++ L + E Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + I PS R T + G++V+ G + IPLL IP +G Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511 Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419 LF++ + E TP L+ Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536 >gi|33599773|ref|NP_887333.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] gi|33567370|emb|CAE31283.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] Length = 545 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 97/281 (34%), Gaps = 41/281 (14%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------- 232 + ++++ Q+ ++ + ++ + + G ++ + A Sbjct: 265 AVEELIRRNQATIRRQIQVEAQLIDIELNDGFEFGVDWNLLTNHLSGRYGSGAITANTPA 324 Query: 233 -------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + + + SF L+AL +++ L+ PT+ Sbjct: 325 GTQPGSGLLPRSINIPAQVIGSAAGVGGGIGFANDSFSVALNALRSFGSVKVLSNPTVRV 384 Query: 280 ISGQSASFTSGGQHLYKTVSSST------------GATSVTTHDYGVVLHFTPTVLSPGR 327 +G A + G Y T S+T + GVV+ P + GR Sbjct: 385 RNGVPAYLSVGANVRYVTEISTTFNNIGGGSSNSSSDVQTDSLFSGVVVGVAPFIHEDGR 444 Query: 328 IGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + L + ++ N+ +P + TT+ L +G T+VL GL+ Sbjct: 445 VELFVHPMQTQVQPQSLALVDVGNGNSVTLPIINTKSITTTLNLNNGDTVVLGGLIDQQF 504 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G+P LS IP G LF N + + E+ I ++ Sbjct: 505 TNANKGLPGLSDIPGAGVLFDNRSDSHKSRELVIILRVRVI 545 >gi|163802024|ref|ZP_02195920.1| putative type III secretion protein YscC [Vibrio sp. AND4] gi|159174165|gb|EDP58973.1| putative type III secretion protein YscC [Vibrio sp. AND4] Length = 623 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 61/307 (19%), Positives = 110/307 (35%), Gaps = 35/307 (11%) Query: 146 VLHG---MVRTIQDSQRA-VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------- 194 VL G ++T A + T + A+ ++ +N + + Sbjct: 222 VLSGVQTQIKTTNQGDEAGANTTATTSKNVSVHGGASVEAEPGLNAIIVRDTQARLPLYH 281 Query: 195 ---------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKS---FAADFGGKFVS 240 Q ++V +I ++ + L Q+G + S D G V+ Sbjct: 282 KLVAQLDQPQSRIEVALSIVDISANDLSQLGIDWRAGIGAGNNSVLDIKTTGDVAGGDVT 341 Query: 241 EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G + K +LD + + LE + + ++ PTL A + K Sbjct: 342 LGSGQTFKSLLDVTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKL 401 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYR 352 + T A + YG +L P ++ I L + E + D+PS R Sbjct: 402 IGKETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSIR 459 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + T + G ++++ G+ +D+I +PLL IP LGALFR++ T Sbjct: 460 KTEISTLATVKQGQSLLIGGVYRDEISHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRMF 519 Query: 413 AATPFLV 419 P +V Sbjct: 520 IIEPRIV 526 >gi|196232588|ref|ZP_03131440.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] gi|196223350|gb|EDY17868.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] Length = 880 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 68/377 (18%), Positives = 128/377 (33%), Gaps = 110/377 (29%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A+ + ++ Q +++ G QV ++ E+++ LK++ F + Sbjct: 480 AIYIVKSSRLIVRNTQDQLDLVDTIISSGGGQGPVQVEIESKFVEIQQTNLKELSFDWLL 539 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD----------------------------------- 244 ++ +K+ G + + Sbjct: 540 GQFNAPATKNVFLGGGTSGTAPALNPSDFPFVNGGVPVGNNPLTAGNRSGNLAISANAID 599 Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 ++ GV F+ V+ AL + + L+ P +T SGQ A Sbjct: 600 ALLFPISGSSQVAPAIGAISGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRAVIE 659 Query: 289 SGGQHLYKTVSSS-----------------------------TGATSVTTHDYGVVLHFT 319 + Y T + T T+ T + GV L Sbjct: 660 IIREFRYPTEFTPPQIPQTFGNTGAGILGGGAATTGSFPVTPTTPTAFETRNTGVTLEVE 719 Query: 320 PTVLSPG-RIGLRIQTEV-------------------------SEPVIGVNAGDMPSYRV 353 P + G I L + +V ++ VI N + P + Sbjct: 720 PVIGPDGYTIDLNLVPQVVEFEGFINYGSPITSSVTNPITGVSTQAVITPNVINQPIFST 779 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 RK T+V + G T+VL GL+++D+Q++++ +P++ IPI+G LFR+S + + I Sbjct: 780 RKVTTSVSVYDGSTVVLGGLIREDVQKVEDKVPIIGDIPIVGRLFRSSVDQHIKRNLIIF 839 Query: 414 ATPFLV----KPVAMRD 426 T L+ +PV D Sbjct: 840 VTARLINAAGEPVRAED 856 >gi|238023720|ref|YP_002907952.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia glumae BGR1] gi|237878385|gb|ACR30717.1| Type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia glumae BGR1] Length = 605 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 92/276 (33%), Gaps = 31/276 (11%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + ++ L++ V ++ I E+ + L+QIG GS Sbjct: 332 DTPDRVGQYEDLIRQLDVR-PQIVEIQAHIIEIDDNTLQQIGVDWRAHGSHLDFQTGNGQ 390 Query: 233 DFGGKFVS------------------------EGGDFSVKGVLDRFSFETVLHALERATA 268 F + G S ++AL+ + Sbjct: 391 AAQNSFSTGQLNPTFGSVQQAGPGSTIVNATPAGAAISAVVGGAGRYLLASVNALQSNSK 450 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-- 326 + A P + + A+ + + + ++ + + GV L P ++ Sbjct: 451 AKIDATPLVATLDNVEATMDNTTKFYVRVQGYTSAD--LYSVSTGVSLRVLPLIVHDRDG 508 Query: 327 -RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 RI L + E ++P + +T + G ++++AG D G+ Sbjct: 509 TRIKLSVHIENGSLT-QQQVDNIPVITTSQINTQAFVGEGESLLIAGFTTDKTANGVTGV 567 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 P LSKIP+LGALFRN+ E TP ++ Sbjct: 568 PFLSKIPLLGALFRNNSDQHNHNETVFLLTPRIIDA 603 >gi|325983467|ref|YP_004295869.1| type II and III secretion system protein [Nitrosomonas sp. AL212] gi|325532986|gb|ADZ27707.1| type II and III secretion system protein [Nitrosomonas sp. AL212] Length = 756 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 79/430 (18%), Positives = 149/430 (34%), Gaps = 56/430 (13%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD------------ 78 E A + + + I+ +K ++ + + V D T D Sbjct: 194 EFKDADMRSVFEIMSRTAGINFVFDKD--IRQDGKIS-IFVRDNTIEDILKLILTTNQLA 250 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V + ++ ++ + L + + + I D+ + +R + +I V Sbjct: 251 YKVLNSNSLLIYPNTPAK----LKDYQELVVRSFQIAHT-DVKQMVAMVRGIVKAKDIYV 305 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + ++ + I+ ++R V L N L E +V L Sbjct: 306 NEQLNLFIMRDTLEAIRLTERIVSL----------------------NDL---AEPEVVL 340 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 V I E+ R +G + + +S+ +K + E Sbjct: 341 DVAILEISRANTFLLGPNFP-QSLQFNYAGNAVGGAPAALISQFNMPGLKSF--GMTSEA 397 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-----TTHDYG 313 + + + LA P + + + A G + + T + G S+ T D G Sbjct: 398 KIDFMHNLSIGDVLANPRIRVANREKAKIHVGEKRPFFTANVQPGINSIVTSTPTFIDLG 457 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVL 370 V L P + S + ++I EVS V+ P R A+T + + G T VL Sbjct: 458 VKLDVEPRIGSNNDVTMKITLEVSSSTQNVSGPGGATAPLVVTRNAETLLTVKDGETQVL 517 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGL++D +G+ L IP L LF N R + E+ + TP +V+ + Sbjct: 518 AGLIQDSDTTNVKGLAGLLNIPGLDRLFSNQDVRRSKNEVVLLITPRIVRNLPNPTNQEN 577 Query: 431 DDHYSVEDDA 440 + H+ +A Sbjct: 578 EYHFGTASEA 587 >gi|182679972|ref|YP_001834118.1| general secretion pathway protein D [Beijerinckia indica subsp. indica ATCC 9039] gi|182635855|gb|ACB96629.1| general secretion pathway protein D [Beijerinckia indica subsp. indica ATCC 9039] Length = 803 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 9/239 (3%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--FSVK 248 QV ++VT+AEV G Q + S+ +A + Sbjct: 542 RPPVQVEIEVTVAEVTLTDALNYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNL 601 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--- 305 + + V++AL T ++ L+ P+L + Q A G Q + +++ T Sbjct: 602 MIGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANP 661 Query: 306 ----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 SV D G++L+ P V + G + L I+ ++S P+ R+ +T+ Sbjct: 662 AIVNSVNYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIA 721 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P+G T++LAGL+++ + G+P++SKI L L N + TE+ + P +++ Sbjct: 722 IPNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILR 780 >gi|197286852|ref|YP_002152724.1| hypothetical protein PMI3025 [Proteus mirabilis HI4320] gi|227354961|ref|ZP_03839372.1| competence protein E [Proteus mirabilis ATCC 29906] gi|194684339|emb|CAR45956.1| putative exported protein [Proteus mirabilis HI4320] gi|227164748|gb|EEI49595.1| competence protein E [Proteus mirabilis ATCC 29906] Length = 371 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 59/318 (18%), Positives = 106/318 (33%), Gaps = 32/318 (10%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 R V V+ + +G I ++ S S + ++ + Sbjct: 60 HRIYPLQYADVTTVAQQLTNYG----ISLLSDHGRIAIDKDSNSLSIIDTEKAHTEISDW 115 Query: 188 LNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGK 237 L I QV + I +D L ++G Q + G+S+ + Sbjct: 116 LKIKETPQQQVHITAHIISSSQDALNELGTQWGLLNMKSANLEGTSNNTTTPHNIASAPL 175 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIR--------------TLAEPTLTAISGQ 283 ++ + + + +A P LTA + Sbjct: 176 TAPSLAALALHQKTKNPLHYIAFNIARINSRLLELELSALEQEKQLAIIASPRLTAAHEK 235 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342 +AS G + VS V + + + TP + +I L ++ + P I Sbjct: 236 TASIKQGTEIP--YVSRDNDTIRVEFKEAVLGMEVTPIIQRSNKIRLLLKISQNTPGIAL 293 Query: 343 -VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + S ++ T V + G T++L G+ + QQ IP LS +P+LG LF + Sbjct: 294 VQGGSEHLSIDKQEIMTEVTIHDGETLMLGGIFQQKQQQHAAKIPFLSSLPLLGILFSHK 353 Query: 402 RFNREETEIFIAATPFLV 419 R E+ I TP L+ Sbjct: 354 RDQHSRHELVIFITPKLI 371 >gi|29840703|ref|NP_829809.1| general secretion pathway protein D [Chlamydophila caviae GPIC] gi|29835053|gb|AAP05687.1| general secretion pathway protein D [Chlamydophila caviae GPIC] Length = 753 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 94/238 (39%), Gaps = 5/238 (2%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + V ++V + E + ++ G G S + + E G Sbjct: 461 KKMVRIEVLLFERKLSNQRKAGLNLLRLGEEVCKKSSMGISWASSGILEFLFKGSTGASL 520 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 ++ L +R A P++ ++ A + VS+ Y Sbjct: 521 VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSADKEKAQYNRAQY 579 Query: 313 GVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G+++ P + G+ + ++T+++ G NA + P R V +P G T++ Sbjct: 580 GIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVI 639 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRD 426 + GL + ++GIP L +IP +G LF + + +TE+F+ TP ++ P ++ Sbjct: 640 IGGLRCKHVSDSQDGIPFLGEIPGVGKLFGMNSTSDSQTEMFVFITPKILDNPAEKKE 697 >gi|284007632|emb|CBA73278.1| type III secretion outer membrane protein YscC,HrcC,mxiD,InvG,SsaC [Arsenophonus nasoniae] Length = 488 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + + V+I +V Q+G S + G + SF + G D + Sbjct: 261 APTMIEVSVSIIDVDASDFNQLGIDWSASAKIGGGTISFNQG------TSGSDNFSTVIG 314 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + +F L+ALE+ + + L+ P++ ++ A K + + Sbjct: 315 NTGNFMVRLNALEKVSKAKILSRPSVVTLNNVQAVLDKNITFYTKL--QGDKVAKLESVT 372 Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367 G +L TP ++ ++ L + E + +N + +P + + T L +G + Sbjct: 373 AGSLLRVTPRLIDSNGRKKVMLSLNIEDGQQTKAINDSEPLPQVQNSEIATQATLNTGES 432 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++L G ++D Q ++ IPLL +P++G LFR+ +++ Sbjct: 433 LLLGGFVQDKDQTVQNKIPLLGDLPLIGGLFRSEDRSKQSVIRLFLIK 480 >gi|260221518|emb|CBA30162.1| hypothetical protein Csp_C22170 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 520 Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 66/356 (18%), Positives = 119/356 (33%), Gaps = 53/356 (14%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 ++V +G R++ S +A L+ + + R K + + E QV L+ + Sbjct: 171 SLVGNGEGRSVVASPQAGILAVRAMPEELRQV------DKFLKATQASVERQVMLEAKVV 224 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------------GGD 244 EV Q G + + G + G Sbjct: 225 EVELRDGYQSGVNWGAFNNDGSTQVAAGVIGSGVTSTNAFVQGTTTINGAVAFPSVATGG 284 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302 L F VL LE ++TL+ P + ++ Q A G + T S Sbjct: 285 GLFGLALATSQFGAVLGFLETQGDVQTLSSPRVATLNNQKAVLKVGTDEFFVTNVSGGTN 344 Query: 303 --------------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNA 345 ++T G+ L TP + + L + V+E ++ Sbjct: 345 SSSGTSSSTTTSTLPTVTLTPFFSGISLDVTPQIDDGVNVTLHVHPSLTTVTEKSKQIDL 404 Query: 346 GDMPSYR-------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G +++ V + DT V + G + + GL++ + + GIP + +P LGALF Sbjct: 405 GSAGNFKLPLASSAVNETDTLVRIQDGSIVAIGGLMQLESSRNASGIPGTTSMPGLGALF 464 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 N + E+ + P +++ D D RV ++ GP Sbjct: 465 GNRATQGRKKEVIVLIKPTIIR--TAADWEAQGRRARAAIDDMDATRARVIQLDGP 518 >gi|253998552|ref|YP_003050615.1| type II and III secretion system protein [Methylovorus sp. SIP3-4] gi|253985231|gb|ACT50088.1| type II and III secretion system protein [Methylovorus sp. SIP3-4] Length = 650 Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 76/457 (16%), Positives = 165/457 (36%), Gaps = 40/457 (8%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-- 79 S K P E I I K I+ ++ + + + + D Sbjct: 187 SAFKKPITLEFKDVPIKSVFEFISKAAGINFTYDQQM---SGEQRTSLFLRNTPIEDAIE 243 Query: 80 VVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAHLEM-----TLRRFIAD 133 V+ + + K V + +++ Q + + + E ++ + Sbjct: 244 VILTSNQL---AKKVLNENTLMIYPLSRSQEYQEMYVRSFYLGNTEAKKAMNMIKTVVKT 300 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 ++ ++ +T+V+ I+ +++ + + + +++ + + I Sbjct: 301 KDVYIDEKLNTLVMRDTPEAIRTAEKLITSQDMAEPEVVLEVEVLEINRRSLEAIGIRYP 360 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 V++ + G + + S GV Sbjct: 361 SAVSV-------------------GVQGRDTVNGTTTLTPGELTVRELKNFNSDLGVFSI 401 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTH 310 L+ L++ T LA P + + + A G + T +++ + SV+ Sbjct: 402 SDPVLALNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLTSIANSTGFVSQSVSYI 461 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGT 367 + G+ L PT+L + +++ EVS + + R A+T + L +G T Sbjct: 462 EVGIKLDVEPTILLNDDVSIKVGLEVSNQTDKITSSSGTVTYTIGTRNANTILRLKNGET 521 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 VLAGLL+DD Q++ +P L+K+P++G LF + +R + EI + TP +V + + Sbjct: 522 QVLAGLLRDDEQKISNRVPGLAKLPLIGKLFTDRSTDRTKKEIALLITPRIVSNITPAEA 581 Query: 428 SRPDDHYSVEDDAKAFFFNR-VNKIYGPKEASEVEGQ 463 V+ + + R VN+ +A + Q Sbjct: 582 LYTAFPAGVDRNTGSNRNGRQVNESPAIAQAPLIPQQ 618 >gi|260778653|ref|ZP_05887545.1| type III secretion system outer membrane pore YscC [Vibrio coralliilyticus ATCC BAA-450] gi|260604817|gb|EEX31112.1| type III secretion system outer membrane pore YscC [Vibrio coralliilyticus ATCC BAA-450] Length = 484 Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + + VTI +V Q+G S G S +F S D + Sbjct: 259 TPTMIEVSVTIIDVDTSDFNQLGIDWSAAAKFGGGSVTFNQG------SLSSDNFSTVIG 312 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + +F L+ALE+ + + L+ P++ ++ A K + + Sbjct: 313 NTGNFMVRLNALEQNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKI--EGEKVAKLESVT 370 Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGT 367 G +L TP +++ ++ L + + + V++ +P + T L +G + Sbjct: 371 TGSLLRVTPRLVNENNFKKVMLSLNIQDGQQAKPVSSKDPLPQVENSEIATQATLKTGES 430 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++L G ++D ++ IPLL IP+LG LFR++ +++ Sbjct: 431 LLLGGFVQDKDHTVENKIPLLGDIPLLGGLFRSTDHSKQSVMRLFLIK 478 >gi|325109742|ref|YP_004270810.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] gi|324970010|gb|ADY60788.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] Length = 1315 Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 56/314 (17%), Positives = 109/314 (34%), Gaps = 45/314 (14%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRD 208 V ++ R + + +S S ++++ L++ +V ++ + EV D Sbjct: 863 VTNLEIMDREIIVVPETVSNSLLISATPRYFEEILTLVHRLDEKPPEVVIQALLVEVELD 922 Query: 209 ILKQIGFQHS----------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + G Q ++ + A+ DF++ + + Sbjct: 923 NDDEFGVQLGLQDSVLFDRSIDNTPGYNFNNQPLGRDTTANPSAVGTQALSDFAMGRLNN 982 Query: 253 RFSF------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 F ++ AL ++ L+ PT+ + Q A G Q + Sbjct: 983 SLGFGGLVLAASSESVSVLIRALSAKRNVQILSRPTIRTLDNQLAQILVGQQVPIVDGVT 1042 Query: 301 STGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----------IGVNA 345 TG + G++L TP + G I + S + Sbjct: 1043 ITGTIGIATPQIVQQQVGIILAVTPRISPDGSIVMETVATKSSLSDEGVPIFTDIETGSV 1102 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + P + A TV +P+G T+VL G++ D + +P + +PILG FR + Sbjct: 1103 IESPIINLTTAQATVSVPNGQTVVLGGMITKDEVSFRRNVPWIGDLPILGIPFRYEGKST 1162 Query: 406 EETEIFIAATPFLV 419 TE+ I TP ++ Sbjct: 1163 RRTELLIFLTPRVI 1176 >gi|313667332|ref|YP_004049733.1| type II and III secretion system protein [Oceanithermus profundus DSM 14977] gi|313153963|gb|ADR37813.1| type II and III secretion system protein [Oceanithermus profundus DSM 14977] Length = 804 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 60/359 (16%), Positives = 114/359 (31%), Gaps = 20/359 (5%) Query: 115 LIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 + + L L + + + V G Q ++ + Sbjct: 441 VAYHNADALARLLTQILGAQTAMPAQEVQQGQAAEGGPTPPQSVPSLKITADPQTNTLLV 500 Query: 174 NQYANSSSKKVMNLLNIAGE-DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + S + + DQV +V I EV R ++G S + Sbjct: 501 YGPRKTVSSALEFAKKLDRPADQVVSRVWIQEVDRSAANELGINWQYATGKFAISVTEGV 560 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 GG ++ + LE+ R L + ++ + + SGG+ Sbjct: 561 LTGGYDSGASALSALAQS---------IRLLEKTGRSRRLLDANTLTLNAEPTTLLSGGK 611 Query: 293 HLYK--------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 L TG T +YG+ L TP G I L I T V Sbjct: 612 LLLPKQGDTGNVDGQEGTGGTGYEEFNYGLNLELTPYTSPDGTITLDIATTVGSLPQSGP 671 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 A++ + + G ++L G++ ++ + G+P+L IP++GALFR + Sbjct: 672 TPGSVLIPQSYAESRIRIKDGQAVILGGVISNEDRNDVSGVPILKDIPVIGALFRTTERV 731 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 + E + I ++K + ++ + + V + G E + Sbjct: 732 QSERILLIIVQSHILKAESDGAGGVELPESALPS-GEYDRSSEVGEGAGMPEGALPTEP 789 >gi|328951048|ref|YP_004368383.1| type II and III secretion system protein [Marinithermus hydrothermalis DSM 14884] gi|328451372|gb|AEB12273.1| type II and III secretion system protein [Marinithermus hydrothermalis DSM 14884] Length = 523 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 69/426 (16%), Positives = 137/426 (32%), Gaps = 51/426 (11%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-----T 75 P + + P+ + I + G +S+ + +++ + Q + V Sbjct: 126 PVLRRFYPVPTGDPKQIADFLEQEISGLSVSVVPGQNVLVVRGAEAQQIEVQTLLNQLQK 185 Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 A+ RT L G+ +L G Q + + ++ Sbjct: 186 PAEAPPLLQRTFQLSYAKAGELAKVLTEALGAQDVIDRLAGLENVDVSLTPPEDGSPTKP 245 Query: 136 IRV--EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 I + + ++T+++ G + + E + + + Sbjct: 246 INIVADERTNTLIVTGTA-------EQIAVVEALIPKLDKP------------------V 280 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV LKV + EV + +G + + + F + L Sbjct: 281 QQVQLKVRVQEVDSQVFNNLGLKWDSLSGGNLIASVLDNGLNLIFDA-------TRSLAS 333 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----------T 302 + L ALE+ R +++ L AS Q K Sbjct: 334 LNIVATLDALEKQNLARRVSDANLIIEDNFGASDEDLRQTGAKGAELKAGAKLLLPIRIG 393 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 G V D G+ L P + + +I L + T+ + + + + + Sbjct: 394 GEIEVREFDVGLTLRLRPQITADRQILLEVFTQ-TGGDPQSGPEGSILIPQKSTLSKLRI 452 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G T+VL GL++ + + + +P L IPILG LFR + +TE+ + T +V Sbjct: 453 KDGQTVVLGGLIERTVNKSENKVPFLGDIPILGMLFRQTSNEVRDTELLVVITANIVDNA 512 Query: 423 AMRDLS 428 + S Sbjct: 513 PSAEAS 518 >gi|330963696|gb|EGH63956.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 174 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 66/187 (35%), Positives = 93/187 (49%), Gaps = 23/187 (12%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAG 346 G + V + + YGV L F+PT+L GRI L+++ EVS + VN Sbjct: 6 GSEVAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTSTLDVNGY 65 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG LFR+ RF R Sbjct: 66 QVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRSKRFQRN 125 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 ETE+ I TP+LV+PV R ++ P D + G Sbjct: 126 ETELVILITPYLVEPVKARVVATPLDKQRAAS-------------------TASAGPRSG 166 Query: 467 GAIGFIY 473 GA GF Sbjct: 167 GAFGFYM 173 >gi|224584676|ref|YP_002638474.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469203|gb|ACN47033.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 532 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 127 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRTY----NLRDQKIVI---- 174 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 175 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 228 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 229 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 287 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + S LD F ++ALE Sbjct: 288 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 335 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 336 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 393 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 394 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 453 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 454 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 496 >gi|313202169|ref|YP_004040827.1| type IV pilus secretin pilq [Methylovorus sp. MP688] gi|312441485|gb|ADQ85591.1| type IV pilus secretin PilQ [Methylovorus sp. MP688] Length = 714 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 103/283 (36%), Gaps = 48/283 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++N +I + QV ++ + K +G + +T S+ G + Sbjct: 430 QQIINKTDIPVK-QVMIESRLVIADEKFGKSLGARFGMTQQSADGRNVIGGTLGNRITEV 488 Query: 242 GGDFSVKGVLDRFSFETVL---------------------HA------------------ 262 D ++ + +T +A Sbjct: 489 SSDGTITQGTHNGTIQTATTGSTATSSDGEPDLMSNLPVSNAYGNLAFTLLRLPAGLLLN 548 Query: 263 -----LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 LE + ++ P +T + + A G + Y SS+GATSV D + L Sbjct: 549 LELSALETDKRGKVVSSPRVTTANQKKAQIQQGTKIPYLRA-SSSGATSVQFVDATLSLE 607 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP V +I + + + + +G +PS + DT V + +G T VL G+ + Sbjct: 608 VTPQVTPDDKIIMDLT--IKKDRVGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQT 665 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P +P +G F+ ++TE+ I TP ++ Sbjct: 666 ERNDVDKVPFFGDLPFVGNAFKRRVRQNDKTELLIFITPKIMD 708 >gi|117924415|ref|YP_865032.1| type II and III secretion system protein [Magnetococcus sp. MC-1] gi|117608171|gb|ABK43626.1| type II and III secretion system protein [Magnetococcus sp. MC-1] Length = 802 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 115/333 (34%), Gaps = 35/333 (10%) Query: 141 VSDTVVLHGMVRTIQDS---QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 L+G + A +L + ++ +K++ QV Sbjct: 199 SGSNTTLNGDRSSALHHLDQPNAGDLDRVLVFYHPDQRHEVDRLQKIIKDSIDHPAPQVY 258 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--- 254 ++ + EV + LK++G S S S + GG+ Sbjct: 259 VEGMVLEVSDEGLKELGASLSSITRGGVNSLSLGVLSPVAVSAGGGNVFSFTRDGTNAAV 318 Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------- 305 + ++AL + L+ P++ IS + A+ Y + +ST A Sbjct: 319 NNALIKINALVSKGEAQILSRPSILTISNRQATIQVVDVVQYPVLQNSTDAVGNTILSSY 378 Query: 306 SVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNA----------GDMPSYRVR 354 S G+ L+ P V + G + L I V V + G P R Sbjct: 379 SFEAVRPGITLNLRPRVTASGHEVNLEIDVTVESLVTANDGDVYNNSGTLLGTKPGSSSR 438 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIP----LLSKIPILGALFRNSRFNREETEI 410 + T +P ++ GL+ D + IP LL+ IPILGAL ++ + E+ Sbjct: 439 RVQTFARIPDRMPFIIGGLVSTDREMTSNRIPVVGDLLADIPILGALVGSTLRQYTKREV 498 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 I TP ++ ++ +V D++ F Sbjct: 499 IIVLTPHILHDDDESIVA-----TNVPKDSEFF 526 >gi|303251572|ref|ZP_07337746.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252115|ref|ZP_07534014.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649570|gb|EFL79752.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860415|gb|EFM92429.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 221 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 5/199 (2%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 +++ + ++ AL+ + LAEP ++ +SG++A GG+ + G SV Sbjct: 2 ALVNSNNLNVLISALDNQNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVL 60 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGG 366 ++G+ L V RI L + VS + +P + R++ +T E+ +G Sbjct: 61 YKEFGIKLAVGAKVQKSDRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGE 120 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + +++GLL + + +P+L IPILGA FRN+ +RE E+ + AT LVKPV Sbjct: 121 SFIISGLLNKQDIEGIKKVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQ 180 Query: 427 LSRPDDHYSVEDDAKAFFF 445 + P + + FF Sbjct: 181 VLYPT--FENTGTMERFFN 197 >gi|289524045|ref|ZP_06440899.1| putative bacterial type II/III secretion system short domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502701|gb|EFD23865.1| putative bacterial type II/III secretion system short domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 589 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 70/412 (16%), Positives = 124/412 (30%), Gaps = 59/412 (14%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP---TKA 77 P P E + + K I+I ++ + P + V D Sbjct: 175 PMSLSTPVTLELRDTELKDVLRMLAKFMGINIIIDPSV----PPTTMTLSVKDAPLREVL 230 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHD-----GKQMLNLDILIERDIAHLEMTLRRFIA 132 V+ Y +G + + G + + D + L+ I Sbjct: 231 AYVMRMNNLKY---AMMGNTILFGTPENLGKSLGMEQTKSFKIAYADPKQVPAILQSLIG 287 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 +N+ V+ TV + G ++D ++ ++ ++ G Sbjct: 288 ITNVAVDERLRTVYVTGRPDNLRDVEQ------------------------LLQRIDHPG 323 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG---------------- 236 QV L+ + EVR K++ S G Sbjct: 324 R-QVMLQARLIEVRDTGRKELESIVDAVYKHWWFSYGAGGGSIGYVDSSEPENFDPDEDR 382 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +G D + + L + LA P++ + GQ AS Y Sbjct: 383 PTSPQGVDLVDITRGTLRILDVGIRNLVESNKADILASPSVVTVDGQKASIALTTNIKYI 442 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRV 353 + G + G L FTP V + + + EV E G ++P Sbjct: 443 SERDDAGNPVYSEERVGPKLDFTPIVGRDDTVTINVAISTGEVVEWRPGGMGEEVPVTSS 502 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 R+ T V + +G V+ GL IP+L+ IP+LG +F+ Sbjct: 503 REVTTMVRVRNGEPFVIGGLFDRRKTDTVSKIPVLADIPLLGEIFKTRTKRD 554 >gi|288818586|ref|YP_003432934.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] gi|288787986|dbj|BAI69733.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] gi|308752177|gb|ADO45660.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] Length = 665 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 112/271 (41%), Gaps = 24/271 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------PSKS 229 K ++ +++ QV L T+ E+ IG + I G+ G + Sbjct: 370 KSLIEKMDVR-RKQVLLAATVVEMSTSKALDIGVKWQIIGTQGGVSLGGGSLQDVYNAIL 428 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTAISGQSASFT 288 G + G ++ G F +L +L + + ++ P + + Q+A Sbjct: 429 SGNFIMGVLSTAGRTVTIGGTQLFFPDLLLLFSLLESGSGFNIVSNPKVLTLDNQTAEIK 488 Query: 289 SGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVS--EP 339 G Y + + + + G+ L TPT+ +I L++Q V P Sbjct: 489 VGQVVPYASGVKFDINGMPVITYDYKEVGLDLGVTPTISGKDLRLQINLKLQDIVDYIRP 548 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 IG + +P R+ ++ V + +G TI++ GL+ +G+P L IP LG +FR Sbjct: 549 QIGTLSYAVPVTSNRQVNSDVVVENGQTIIIGGLVNTKTLTSTQGVPGLKDIPGLGRIFR 608 Query: 400 NSRFNREETEIFIAATPFLV-KPVAMRDLSR 429 ++ +FI TP+++ KP + +++R Sbjct: 609 RDTKTEDKVSLFIFLTPYVIEKPEELSEITR 639 >gi|195873613|ref|ZP_02697884.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633590|gb|EDX52004.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 514 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 63/403 (15%), Positives = 136/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + E + + L + Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAENYAGGMSLQEAL 210 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + S LD F ++ALE Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 317 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478 >gi|71909017|ref|YP_286604.1| type II and III secretion system protein [Dechloromonas aromatica RCB] gi|71848638|gb|AAZ48134.1| type II and III secretion system protein [Dechloromonas aromatica RCB] Length = 594 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 124/321 (38%), Gaps = 37/321 (11%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 T +++ + +E+ + Q + ++ ++ + + QV ++ TI EV Sbjct: 276 STFREAASVIMNAESGVITVRATQKQHERIQEFLDRVGNSARRQVLIEATIVEVTLKDGY 335 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 Q G + F + + + ++ L+ + Sbjct: 336 QQGINWTQLAR--------GGTFSFIGDALTKNATNLTYTKGGDPNALVTMLDTFGTTKV 387 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-----------TTHDYGVVLHFTP 320 L+ P L+ ++ Q+A ++Y +V + T T+ + G+V+ TP Sbjct: 388 LSSPRLSVMNNQTALLKVVENYVYFSVKADTTTTANVGTTTAYTTTPQSVSVGLVVSVTP 447 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPSGGTIV 369 + + L ++ ++ V + +P R R+ ++ + + SG + Sbjct: 448 QISDGDAVTLNVRPTITSVAREVQDPNPDLKKNSISNLVPVIRTREIESIMRVASGNIAI 507 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR---- 425 L GL++D I + +PLL +IPI G L N ++TE+ I P ++K ++ Sbjct: 508 LGGLMEDKIDYQTQRVPLLGQIPIAGELVNNRNNAAQKTELVIFLRPVVIKDASLEGDYA 567 Query: 426 --DLSRPDDH-YSVEDDAKAF 443 P+D ++ +A+ F Sbjct: 568 NMRGFLPNDSFFAQPSEAQPF 588 >gi|284007665|emb|CBA73372.1| Type III secretion outermembrane pore forming protein YscC,MxiD,HrcC,InvG [Arsenophonus nasoniae] Length = 554 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 82/261 (31%), Gaps = 24/261 (9%) Query: 169 SQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 + + +++N + + QV L + I ++ + ++G + S Sbjct: 272 GSNSLLAKGSIQGIQLINEMIQRLDQPKRQVELSLWIIDIAKHEADRLGIDWQSSYHSKD 331 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + F + A+ + ++ P + A Sbjct: 332 GNFLLNTSDISAAA-------------GIHFLAKIRAMSMEGSAHMVSRPIILTQENTPA 378 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-----IGLRIQTEVSEPV 340 F + + ++ + +G ++ P + G I L E Sbjct: 379 IFDNSTTFYAQV--RGERIATLESATFGTMISVVPRLSPTGDEIEMVINLEDGAEKKTNS 436 Query: 341 IGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 D +P T + G ++++ G ++DI + IPLL IP +G LFR Sbjct: 437 GETEKIDALPVINRTNISTVARVAQGDSLLIGGYTREDIDSSESKIPLLGDIPWIGGLFR 496 Query: 400 NSRFNREETEIFIAATPFLVK 420 S ++ P LVK Sbjct: 497 FSSTTNKKMVRIFMLQPRLVK 517 >gi|104781918|ref|YP_608416.1| secretion type II protein [Pseudomonas entomophila L48] gi|95110905|emb|CAK15621.1| Putative secretion type II protein related to gspD (secretin) protein [Pseudomonas entomophila L48] Length = 611 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 65/437 (14%), Positives = 140/437 (32%), Gaps = 71/437 (16%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV------ 80 P E A + + + I+ ++ + + + V + D V Sbjct: 183 PVTLEFRDANLKTIFEVLAQVAGINFIFDRDLRPDMK---ATIFVREVRIEDAVALLLEQ 239 Query: 81 ------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + + T+ ++ + + + ++ L D L+ + Sbjct: 240 NQLRQKIVNDNTLLVYPDSPQKTK-----DYQELVMRTFYLTSIDANTAMNMLKTMLKTR 294 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 ++ V+ +T+ + ++ +++ ++ + + + + Sbjct: 295 DVFVDERLNTLTMRDTPDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 345 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 +G Q T + + S+ Sbjct: 346 ----------------LDLGLQWPNTFGVLTSDGKSVSVLDQLRGIDSSRISI-----SP 384 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308 + + ++A + I TLA P + + + A G + + SVT Sbjct: 385 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 442 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365 D G+ L PTV + +++ EVS R A T++ L G Sbjct: 443 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 502 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ + Sbjct: 503 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 560 Query: 426 DLSRPDDHYSVEDDAKA 442 Y D + Sbjct: 561 --------YQSPSDMEF 569 >gi|313498582|gb|ADR59948.1| Type II and III secretion system protein [Pseudomonas putida BIRD-1] Length = 621 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 63/437 (14%), Positives = 141/437 (32%), Gaps = 71/437 (16%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P E A + + + I+ +K + + + V + D Sbjct: 187 PVTLEFRDANLKTIFEVLSQVAGINFIFDKDLRPDLK---ATIFVREVRIEDAIALLLEQ 243 Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + + T+ ++ + + + ++ L D ++ + Sbjct: 244 NQLRQKIVNDNTLMVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 ++ V+ +T+ + ++ +++ ++ + + + + Sbjct: 299 DVFVDERLNTLTMRDTPDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 349 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 +G Q T + + + + + + Sbjct: 350 ----------------LDLGLQWPNTFGVLSDDGNPVS-----VLDQLKGINSSRISIAP 388 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308 + + ++A + I TLA P + + + A G + + SVT Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365 D G+ L PTV + +++ EVS R A T++ L G Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ + Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 564 Query: 426 DLSRPDDHYSVEDDAKA 442 Y D + Sbjct: 565 --------YQSPSDMEF 573 >gi|270284835|ref|ZP_06194229.1| Type III secretion structural protein (outer membrane ring) [Chlamydia muridarum Nigg] gi|270288864|ref|ZP_06195166.1| Type III secretion structural protein (outer membrane ring) [Chlamydia muridarum Weiss] gi|301336215|ref|ZP_07224417.1| Type III secretion structural protein (outer membrane ring) [Chlamydia muridarum MopnTet14] Length = 918 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 564 INNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 623 Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253 + V + G G++ Sbjct: 624 KVAYASGLLSNTGVVDPLRNQTPPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 683 Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 + +L AL++ + P + A Q ASF G ++T Sbjct: 684 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 743 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + ++ D GV L T T+ + L+I+ +SE P A T Sbjct: 744 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 802 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D + ++ G+PLLS +P++ LF + R++ I I P ++ Sbjct: 803 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVI 862 Query: 420 KPVAMRDLSRPDDHYS 435 + + Y Sbjct: 863 SSFEEGTVLSNSEGYR 878 >gi|71737444|ref|YP_273539.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557997|gb|AAZ37208.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. phaseolicola 1448A] gi|170523102|gb|ACB20761.1| type III outer-membrane secretion protein HrcC [Pseudomonas syringae pv. glycinea] gi|320322961|gb|EFW79051.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. glycinea str. B076] gi|320329916|gb|EFW85904.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. glycinea str. race 4] gi|330874593|gb|EGH08742.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. glycinea str. race 4] Length = 699 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 89/265 (33%), Gaps = 16/265 (6%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R +K++ L+++ + + + I ++ R+ L ++ + + Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S G + + G S + + F + LHALE + + P++ Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSIL 393 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A S ++ G L P L ++ L + E Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + I PS R T + G++V+ G + IPLL IP +G Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511 Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419 LF++ + E TP L+ Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536 >gi|284008887|emb|CBA75707.1| protein transport protein HofQ [Arsenophonus nasoniae] Length = 347 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 85/229 (37%), Gaps = 5/229 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLD 252 QV + I R+ L ++G ++ + S + + Sbjct: 119 QQVQITAYIINTSREALYELGIFWELSSDKINQVGISRLNIHQPAPSSIPHIAFNIAKIK 178 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 L ALE+ + +A P L A SAS G + + S + + + Sbjct: 179 SHLLSLELSALEQENQLSIIASPRLMASHNHSASIKQGTEIP--YIIQSKNKSQIKFKEA 236 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVL 370 + + TPT+L G++ L ++ + P N + ++ T V + G T++L Sbjct: 237 ILGMEVTPTILRGGKVRLALKISQNTPNTSLLANTYQHIAINKQEISTQVTINHGETLIL 296 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ + ++ IP L+ IP G LF E+ I TP L+ Sbjct: 297 GGIFQQKKNNQQQKIPYLADIPFFGQLFTKDGKQTYHRELVIFITPQLI 345 >gi|170738269|ref|YP_001779529.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia cenocepacia MC0-3] gi|169820457|gb|ACA95039.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia cenocepacia MC0-3] Length = 588 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 93/259 (35%), Gaps = 26/259 (10%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------- 222 ++ L++ + ++ I EV ++Q+G + S Sbjct: 331 LIQRLDVK-PRLIEIEAHIFEVDTSSIRQLGVNWTAHNSHIDLQTGNGLGAQNTYGGTLT 389 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + + + A + + GG S + ALE + A P +T + Sbjct: 390 QNFGNTTLAGNVTAAAMPVGGVLSAVIGNAGRYLMANVSALEEQNLAKIDASPKVTTLDN 449 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVI 341 A + Q + ++ + + GV L P V GR +++ + + + Sbjct: 450 IEADMANQTQFFVRVSGYTSAD--LYSVSTGVSLRVLPMVVDEGGRTQIKLDVAIQDGQL 507 Query: 342 GV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 ++P +T+ + G +++AG D G+P+LSKIP++G LF+ Sbjct: 508 TSRTVDNIPVISSTNINTSAFVNEGEALLIAGYKNDGRIDTTTGVPVLSKIPVIGNLFKY 567 Query: 401 SRFNREETEIFIAATPFLV 419 + E TP ++ Sbjct: 568 TDRENTRMERLFLLTPRII 586 >gi|239814080|ref|YP_002942990.1| general secretion pathway protein D [Variovorax paradoxus S110] gi|239800657|gb|ACS17724.1| general secretion pathway protein D [Variovorax paradoxus S110] Length = 774 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 26/262 (9%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------ 238 QV ++ I EV G Q ++ + ++ Sbjct: 415 GRRAQVMIEALIVEVSAKKAANFGVQWQSALGNNAVIGTNSSLASANILALTQALATRDV 474 Query: 239 ----VSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 S G + + G + + + L+ P L + + A G Sbjct: 475 ANVRPSSGLNLGIAGKIGGQYILGAIANFFNSDGDANVLSTPNLLTLDNEEAKIVIGQNV 534 Query: 294 LYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVN 344 + T + T+V D G+ L PT+ G + + I E S +N Sbjct: 535 PFVTGQYASTSGSVGINPFTTVERKDVGLTLRVRPTINENGTVKMTIFQETSTVDGNTIN 594 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 + P+ R +++V + GG ++L GLL DD E +P+ IP+LG LF+N Sbjct: 595 NPNGPTTNKRSIESSVLVEDGGLVMLGGLLSDDYGNTIEKVPVAGDIPVLGNLFKNEIRT 654 Query: 405 REETEIFIAATPFLVKPVAMRD 426 R ++ + + P +++ A + Sbjct: 655 RNKSNLMMFLRPAVMRDGASTE 676 >gi|257487974|ref|ZP_05642015.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 170 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 65/187 (34%), Positives = 92/187 (49%), Gaps = 23/187 (12%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAG 346 G + V + + YGV L F+PT+L GRI L+++ EVS + N Sbjct: 2 GGEVAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGY 61 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG LFR+ RF R Sbjct: 62 QVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRSKRFQRN 121 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 ETE+ I TP+LV+PV R ++ P D + G Sbjct: 122 ETELVILITPYLVEPVKDRVVATPLDKQRAAS-------------------TASAGPRSG 162 Query: 467 GAIGFIY 473 GA GF Sbjct: 163 GAFGFYM 169 >gi|149926070|ref|ZP_01914333.1| putative type III secretion protein [Limnobacter sp. MED105] gi|149825358|gb|EDM84569.1| putative type III secretion protein [Limnobacter sp. MED105] Length = 530 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 103/306 (33%), Gaps = 12/306 (3%) Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + I VS + + + V ++ + S + A S NL++ Sbjct: 200 LMMGERIGALPVSPSSGVKKKADDDPEKAEFVSVTADPRTNSILIRDAKSKYDYYKNLID 259 Query: 190 IAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 + ++ + EV + L ++G + + + ++ G Sbjct: 260 QLDRQVAMIEVEAMMVEVDQKGLNELGLEFGLLSDRFAYDFPGSGVGRPSLIAAGA---- 315 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 ++D F L AL + LA PT+ SA + S V Sbjct: 316 TSIVDPMRFMARLKALSADENAKVLARPTIVTQDNVSAYIDLSQTLYIQV--SGERVADV 373 Query: 308 TTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 G +L TP V+ RI LRI+ + +MP + T + Sbjct: 374 IPITAGSLLQVTPRVVIDEQEERIFLRIEIQDGSLTENTQGINMPRVQNTSLSTQAVIQR 433 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVA 423 I++ G ++ + +PLL IP +G F ++ + TP L+ +P+ Sbjct: 434 EKAILIGGYNRESTEVNDYKVPLLGDIPYIGKAFTSTEKRTQTVARLFLITPRLIDRPIH 493 Query: 424 MRDLSR 429 + +R Sbjct: 494 DSESTR 499 >gi|16766204|ref|NP_461819.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|207858160|ref|YP_002244811.1| secretory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|20141547|sp|P35672|INVG_SALTY RecName: Full=Protein invG; Flags: Precursor gi|16421446|gb|AAL21778.1| outer membrane invasion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|206709963|emb|CAR34317.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248034|emb|CBG25867.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995026|gb|ACY89911.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159457|emb|CBW18975.1| type III secretion system secretory apparatus [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913916|dbj|BAJ37890.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323131250|gb|ADX18680.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326624629|gb|EGE30974.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332989770|gb|AEF08753.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 562 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + S LD F ++ALE Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526 >gi|187251612|ref|YP_001876094.1| rcpA subunit [Elusimicrobium minutum Pei191] gi|186971772|gb|ACC98757.1| RcpA subunit [Elusimicrobium minutum Pei191] Length = 248 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 21/238 (8%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L+ + V++ I E+ I IGF G + Sbjct: 25 LHARKTNLVSVSADIVEISGSINSNIGFSWYNIFDF-------------AEKEIPGVLEI 71 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + + T L +E + L+ P + +G +A+ + GGQ + V + Sbjct: 72 GSFERKTALTTRLRLMENEGKAQILSNPKIVTRTGTNANISVGGQIPFPEV--NNQGVGT 129 Query: 308 TTHDYGVVLHFTPTVLSP--GRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVE 361 + DYGV+L+ PT++ I L++ EVS P + V + +PS R+ +T VE Sbjct: 130 SMLDYGVILNVMPTIIPEQSNLINLQVNLEVSAPDYSRTVSVGSTTVPSINKRRVETQVE 189 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L SG T+V+ GL + IPLL ++P++G LFRN E+ +F+ T +V Sbjct: 190 LHSGETLVIGGLKSSSRNVSVDRIPLLGRLPLIGLLFRNKDTLDEQRSLFLFVTVEIV 247 >gi|300771988|ref|ZP_07081859.1| type II general secretion pathway D protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761374|gb|EFK58199.1| type II general secretion pathway D protein [Sphingobacterium spiritivorum ATCC 33861] Length = 624 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 V ++VT+ ++ + + G + + S S F + + + + Sbjct: 380 PMVLIEVTLLDINKGNTVKTGIKMGVADSIPQTGGSLFPALDFTFGAGSINRFLSFLGKN 439 Query: 254 FSFET---------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301 +F L ALE + + P L+ ++G A + G + YKT + + Sbjct: 440 NAFNLGRVTPNFYVTLSALEANKNVEMRSIPKLSTLNGHQAKLSIGSKRYYKTTTQNVIP 499 Query: 302 ------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 T + + + P + +I L+I ++S+ V V G P K Sbjct: 500 SLQTTTVTTEQFTPVEANMNIDIKPVISGDDQITLKITVDISDFVGTVKDGQPPPTSTSK 559 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++ + + IVL G+ + + G+PLLS+IP+L LF + + + Sbjct: 560 FESIIRARNEDMIVLGGIERTENSSSGSGVPLLSRIPVLKWLFSSREKTTNKVVSVVFIK 619 Query: 416 PFLV 419 P ++ Sbjct: 620 PTII 623 >gi|56414850|ref|YP_151925.1| virulence secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363778|ref|YP_002143415.1| virulence secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129107|gb|AAV78613.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095255|emb|CAR60806.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 562 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + S LD F ++ALE Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526 >gi|197286525|ref|YP_002152397.1| type III secretion system protein [Proteus mirabilis HI4320] gi|194684012|emb|CAR45306.1| type III secretion system protein [Proteus mirabilis HI4320] Length = 571 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 83/254 (32%), Gaps = 22/254 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L + I ++ + +G + S + F Sbjct: 318 KRQVELSLWIIDISKSKADSLGVNWQGSYGSGKNTFFFNTASLSAV-------------S 364 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 FSF + + AL + ++ P L A F + + S+ + + Sbjct: 365 GFSFLSKIKALSEEGEAKMVSRPILLTQENTPAIFDNNTTFYTQI--KGERVASLESTTF 422 Query: 313 GVVLHFTPTVLSPGR-----IGLRIQTEV--SEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G ++ P + + + I L E + +P T + G Sbjct: 423 GTMISVLPRISNTNQEIEMIINLEDGAEKKSDDEDREEGIEKLPVINRTNISTVARVSEG 482 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 G++++ G ++D + + IP LS IP++G F N ++ P L+ Sbjct: 483 GSLLIGGYTREDNIKAENKIPFLSAIPLVGRAFSYQSDNNKKMVRIFMLQPRLLDKTDTH 542 Query: 426 DLSRPDDHYSVEDD 439 L +H + D Sbjct: 543 GLDSLTEHPFLPMD 556 >gi|161615810|ref|YP_001589775.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365174|gb|ABX68942.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 553 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 148 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 195 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 196 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 249 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 250 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 308 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + S LD F ++ALE Sbjct: 309 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 356 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 357 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 414 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 415 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 474 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 475 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 517 >gi|220932103|ref|YP_002509011.1| type II and III secretion system protein [Halothermothrix orenii H 168] gi|219993413|gb|ACL70016.1| type II and III secretion system protein [Halothermothrix orenii H 168] Length = 385 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 99/254 (38%), Gaps = 18/254 (7%) Query: 169 SQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 + +K++NL+ Q+ + V ++EV LK++G P Sbjct: 145 GDMLSISAPPTKMEKIINLIKRIDKPRKQIKITVVVSEVSTKELKKLGTGFLEYREKDNP 204 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S + D ++ + T L L+ + A+P++ + G+ A Sbjct: 205 SLNLKYDGSSLVLNGNIF---------ENLLTRLEILQEEEKAKIHADPSIVVMDGEPAE 255 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 G+ ++ G+ L TP ++S + L +S V Sbjct: 256 LFI-GEKQTLFITEDEEIEYFKDIKVGISLKVTPRLISKDEMILDFSPSISHFVNS---- 310 Query: 347 DMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P VR+ DTTV + SG T V+AG+ D K+ +P L+KIP+L LF + Sbjct: 311 KLPEIAVRENTLDTTVRVASGQTAVIAGMTLQDDYNYKKSVPGLNKIPLLRWLFTKKVND 370 Query: 405 REETEIFIAATPFL 418 + E+ I TP + Sbjct: 371 TGDRELLIFVTPTI 384 >gi|317061875|ref|ZP_07926360.1| general secretion pathway protein D [Fusobacterium sp. D12] gi|313687551|gb|EFS24386.1| general secretion pathway protein D [Fusobacterium sp. D12] Length = 419 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 20/252 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGG 236 K++ ++I G+ QV + + ++ +D+ ++GF S + S G Sbjct: 164 DKIIQEIDIEGK-QVKVYSQVLDISKDLFHELGFDWLYEKPSKQKNQFSVSVLGEESAGN 222 Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G +++ + LE ++ + P + G + F + + Sbjct: 223 SGPVLGSKWNLIRQFSNAAEVLGLSFKLLEAKQDLKITSSPAILIAHGNTGEFKITEEVI 282 Query: 295 YKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345 + + G++L P + + L I E+S+ Sbjct: 283 VGEKKEKKKGEHTSVEPIFKEAGLILKVVPYIHQDSSVTLDISLELSDFKYRQTNQKKDW 342 Query: 346 ---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 S R T + + + T+ + GL + + + +P L IP +G LFR+ Sbjct: 343 NFNSQGGSKIGRSLSTRIHVKNKETVFIGGLSRFTNRNTENKVPFLGDIPGIGHLFRSES 402 Query: 403 FNREETEIFIAA 414 ETE++I Sbjct: 403 KKESETEMYIKI 414 >gi|62181400|ref|YP_217817.1| invasion protein; outer membrane [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129033|gb|AAX66736.1| invasion protein; outer membrane [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715884|gb|EFZ07455.1| invasion protein; outer membrane [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 562 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + S LD F ++ALE Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526 >gi|238909665|ref|ZP_04653502.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 562 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + S LD F ++ALE Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526 >gi|320087303|emb|CBY97068.1| Protein invG Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 562 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + S LD F ++ALE Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526 >gi|291615048|ref|YP_003525205.1| type II and III secretion system protein [Sideroxydans lithotrophicus ES-1] gi|291585160|gb|ADE12818.1| type II and III secretion system protein [Sideroxydans lithotrophicus ES-1] Length = 560 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 59/396 (14%), Positives = 119/396 (30%), Gaps = 73/396 (18%) Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD---- 143 YL G+ G++++ + G + A R S + + +D Sbjct: 154 YLTGQRDGRSSLRV--ASGSVADSAVTQGMPATAATGTNSNR--DSSKVTMTTSTDFWGE 209 Query: 144 -TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 + L +V + + + + + + I+ + QV L+ I Sbjct: 210 LSAALKAIVGDEKGRSVVISPMSGVIVIRAMPDELKNVAA-YLKASQISIDRQVILEAKI 268 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------- 246 EV+ + Q G + + + G +S GG + Sbjct: 269 VEVQLNDSFQSGVNWGVFKNGPNSHVTAGIGSPGSTLSPGGAVASTLANTALTSTPGASL 328 Query: 247 -----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +F +L+ LE + L+ P + ++ Q A Sbjct: 329 LPTATSLLPSSAVAGSLFGLAFQTSNFAALLNFLETQGNVHVLSSPRIATLNNQKAVLKV 388 Query: 290 GGQHLY-----------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 G + ++ ++ V G+ L TP + I L + VS Sbjct: 389 GTDEFFVTEVTGGTQATTAIAGTSPTVKVQPFFSGIALDVTPVIDENNEIILHVHPSVST 448 Query: 339 PVIGVNAGDMPSYR--------------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 D+ + V + D+ V G + + GL++ G Sbjct: 449 VTTVNKTVDLGTSNGVSNIFNLPLASSSVSETDSIVRARDGQIVAIGGLMRQAEVNDDSG 508 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P L K ++F + + E+ E+ I P +V Sbjct: 509 LPGLPK-----SIFGQTSKHTEKRELVILLKPTVVD 539 >gi|257464370|ref|ZP_05628747.1| general secretion pathway protein D [Fusobacterium sp. D12] Length = 435 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 20/252 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGG 236 K++ ++I G+ QV + + ++ +D+ ++GF S + S G Sbjct: 180 DKIIQEIDIEGK-QVKVYSQVLDISKDLFHELGFDWLYEKPSKQKNQFSVSVLGEESAGN 238 Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G +++ + LE ++ + P + G + F + + Sbjct: 239 SGPVLGSKWNLIRQFSNAAEVLGLSFKLLEAKQDLKITSSPAILIAHGNTGEFKITEEVI 298 Query: 295 YKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345 + + G++L P + + L I E+S+ Sbjct: 299 VGEKKEKKKGEHTSVEPIFKEAGLILKVVPYIHQDSSVTLDISLELSDFKYRQTNQKKDW 358 Query: 346 ---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 S R T + + + T+ + GL + + + +P L IP +G LFR+ Sbjct: 359 NFNSQGGSKIGRSLSTRIHVKNKETVFIGGLSRFTNRNTENKVPFLGDIPGIGHLFRSES 418 Query: 403 FNREETEIFIAA 414 ETE++I Sbjct: 419 KKESETEMYIKI 430 >gi|26990190|ref|NP_745615.1| type II and III secretion system protein [Pseudomonas putida KT2440] gi|24985131|gb|AAN69079.1|AE016541_7 secretion protein, putative [Pseudomonas putida KT2440] Length = 621 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 63/437 (14%), Positives = 141/437 (32%), Gaps = 71/437 (16%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P E A + + + I+ +K + + + V + D Sbjct: 187 PVTLEFRDANLKTIFEVLSQVAGINFIFDKDLRPDMK---ATIFVREVRIEDAIALLLEQ 243 Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + + T+ ++ + + + ++ L D ++ + Sbjct: 244 NQLRQKIVNDNTVMVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 ++ V+ +T+ + ++ +++ ++ + + + + Sbjct: 299 DVFVDERLNTLTMRDTSDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 349 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 +G Q T + + + + + + Sbjct: 350 ----------------LDLGLQWPNTFGVLSDDGNPVS-----VLDQLKGINSSRISIAP 388 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308 + + ++A + I TLA P + + + A G + + SVT Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365 D G+ L PTV + +++ EVS R A T++ L G Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ + Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 564 Query: 426 DLSRPDDHYSVEDDAKA 442 Y D + Sbjct: 565 --------YQSPSDMEF 573 >gi|50121028|ref|YP_050195.1| type III secretion system protein [Pectobacterium atrosepticum SCRI1043] gi|42560404|gb|AAS20364.1| HrcC [Pectobacterium atrosepticum] gi|49611554|emb|CAG75002.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043] Length = 689 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 59/428 (13%), Positives = 130/428 (30%), Gaps = 43/428 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99 G I + N + + + V++ A V + + + + G A + Sbjct: 169 TGPKAYIDLIRNFSQQREKQDERRKVMIFPLRYASVSDRTLQYRDQKITI----PGVATI 224 Query: 100 I--LIGHDGKQML----NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 + L+ + + + + + + R + + + G + Sbjct: 225 LNELMDGQRAAPAGASGPMPVQPDTGMEAMRDSTRSLM--TRLATRTSPGR---SGEASS 279 Query: 154 IQDSQ-RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + ++ + ++++ +++ V + I +V R L + Sbjct: 280 RVTLSGKISADVRNNALLIRDDEKRRAEYQQLVEHIDVPQNL-VNIDAIILDVDRTALSR 338 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 + + + FVS D F + ALE + Sbjct: 339 LEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADIQALEGEGTASIV 387 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLR 331 A P++ + Q A + G L TP V+ G + ++ Sbjct: 388 ANPSVLTLENQPAIVDFSRTAFITAT--GERVADIQPVTAGTSLQVTPRVIGEGAQRSIQ 445 Query: 332 IQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + ++ + + S R T + +VL G ++ IP+L Sbjct: 446 LVIDIEDGQVETGREGEASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDRRIPILGD 505 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IP+LG LF ++R E TP LV D + P + S + + +N+ Sbjct: 506 IPLLGKLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSVNRQQ--LNGAMNR 558 Query: 451 IYGPKEAS 458 + + Sbjct: 559 VAQRNGKT 566 >gi|218988958|gb|ACL13621.1| invasion protein InvG [Salmonella enterica subsp. salamae serovar Sofia] Length = 562 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 56/336 (16%), Positives = 118/336 (35%), Gaps = 50/336 (14%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD--TVVLHGMVRTIQD 156 + +G++ + L+ L++ A NI++ D ++++ G Sbjct: 233 MPAFSANGEKGKTANYAGGM---SLQEALKQNAAAGNIKIVAYPDTNSLLVKGT------ 283 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 +++ + + ++ L++A V L + I ++ + L+++G Sbjct: 284 AEQVHFI------------------EMLVKALDVAKRH-VELSLWIVDLNKSDLERLGTS 324 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 S + G + + S LD F ++ALE ++ P Sbjct: 325 WS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPV 372 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE- 335 L A F + K + ++ YG ++ P + G+I + + E Sbjct: 373 LLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIED 430 Query: 336 ----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + + +P T +P G ++++ G +D + IP L KI Sbjct: 431 GNDKTPQTDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKI 490 Query: 392 PILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 P +G+LFR S N+ P +V P+ Sbjct: 491 PFIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526 >gi|194445131|ref|YP_002042139.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194470942|ref|ZP_03076926.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248412|ref|YP_002147795.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243599|ref|YP_002216867.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205356993|ref|ZP_02344010.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205358415|ref|ZP_02656026.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194403794|gb|ACF64016.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194457306|gb|EDX46145.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197212115|gb|ACH49512.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197938115|gb|ACH75448.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205324767|gb|EDZ12606.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334513|gb|EDZ21277.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|321223445|gb|EFX48511.1| Protein InvG precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 514 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 210 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + S LD F ++ALE Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 317 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478 >gi|474942|emb|CAA53049.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 562 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 134/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S G + + S LD F ++ALE Sbjct: 318 LERLGTSWS------------GTITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526 >gi|92116356|ref|YP_576085.1| type II and III secretion system protein [Nitrobacter hamburgensis X14] gi|91799250|gb|ABE61625.1| type II and III secretion system protein [Nitrobacter hamburgensis X14] Length = 773 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 63/360 (17%), Positives = 128/360 (35%), Gaps = 34/360 (9%) Query: 95 GQAN-VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G N G G + + + + + Sbjct: 381 GNTNSPSAAGGSGSRPPSGMGGAGGGFSKVSQQTTASGGAGAGTNTPTGGGALDSNSGGN 440 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN-IAGED-QVTLKVTIAEVRRDILK 211 Q + V ++ ++ + ++ K + L + QV + TIAEV Sbjct: 441 GQPLMQGVRITPDVVNNTLLIYADQANYKIIQATLQQVDQPQLQVAIDATIAEVTLTNEL 500 Query: 212 QIGFQHSITGSSSGPSKSFAADFG-----------------GKFVSEGGDFSVKGVLDRF 254 G Q +T + G + + + + L F Sbjct: 501 SYGVQSYLTSKNLGMKANQGSLLNTQSNAAPIPTSAGTTDLAGAAGSVANAFINRALPGF 560 Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 +F +L AL T+++ L+ P+L I+ Q+A+ G T +++ + Sbjct: 561 NFLIGSEAQPAVILDALHAVTSVKVLSNPSLVVINNQTATLQVGDTVPVSTGTATVLNGN 620 Query: 307 ------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + + G++L +P + G + L ++ E+S ++ P+ R+ +++ Sbjct: 621 NNVVNSIDYRNTGIILRVSPRINVNGNVRLEVEQEISSVQPTASSTLTPTVAERRVKSSI 680 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + SG T++LAGL+ + + GIPLL +I LG F + TE+ I P +++ Sbjct: 681 SVASGQTVLLAGLISEQQNGGRSGIPLLDEIRGLGDAFAHQGKRGTRTELIIFIRPQIIR 740 >gi|42562008|gb|AAS20450.1| HrcC [Pseudomonas syringae pv. phaseolicola] Length = 699 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 89/265 (33%), Gaps = 16/265 (6%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R +K++ L+++ + + + I ++ R+ L ++ + + Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S G + + G S + + F + LHALE + + P++ Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSIL 393 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A S ++ G L P L ++ L + E Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + I PS R T + G++V+ G + IPLL IP +G Sbjct: 452 DGKIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511 Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419 LF++ + E TP L+ Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536 >gi|205357926|ref|ZP_02574228.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328766|gb|EDZ15530.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 556 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 151 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 198 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 199 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 252 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 253 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 311 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + S LD F ++ALE Sbjct: 312 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 359 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 360 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 417 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 418 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 477 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 478 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 520 >gi|197263182|ref|ZP_03163256.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205360510|ref|ZP_02683952.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197241437|gb|EDY24057.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205349182|gb|EDZ35813.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 514 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 136/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 210 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + S LD F ++ALE Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 317 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375 Query: 330 LRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + + +P T +P G ++++ G +D + Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478 >gi|205359783|ref|ZP_02832405.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342787|gb|EDZ29551.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 556 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 136/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 151 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 198 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 199 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 252 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 253 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 311 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + S LD F ++ALE Sbjct: 312 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 359 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 360 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 417 Query: 330 LRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + + +P T +P G ++++ G +D + Sbjct: 418 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 477 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 478 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 520 >gi|76574829|gb|ABA47303.1| HrcC [Pseudomonas cichorii] Length = 672 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 87/272 (31%), Gaps = 15/272 (5%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + I ++ R L + + S S S G + + D Sbjct: 301 VEIDAIILDIDRTQLSALESRWSARAGSVNFGSSLL----------TGGSATLSINDFDR 350 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + ALE +A P++ + Q A +V + G Sbjct: 351 FFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITAT--GERVANVQSVTAGTS 408 Query: 316 LHFTPTVLSPGRIG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGL 373 L P ++ + ++ ++ + + + G+ P + T + ++V+ G Sbjct: 409 LQVIPRTIAGAQPSRFQLIIDIEDGQLDRSRDGETPDVKRGTVSTQAVISENRSLVIGGF 468 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 D+ Q + +PLL +P+LG+LF + R E TP L+ ++ Sbjct: 469 HVDETGQHHDKVPLLGDLPVLGSLFTSKRQEVSRRERLFILTPRLIGDQIDPARYIATEN 528 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 + D N K A + Sbjct: 529 -RPQLDKALALSGSPNSRDRKKAAISNAFADL 559 >gi|205353841|ref|YP_002227642.1| virulence associated secretory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273622|emb|CAR38609.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628950|gb|EGE35293.1| Protein invG [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 562 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 137/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + + ++ L++A V L + I ++ + Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVNFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + S LD F ++ALE Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423 Query: 330 LRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + + +P T +P G ++++ G +D + Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526 >gi|148547514|ref|YP_001267616.1| type II and III secretion system protein [Pseudomonas putida F1] gi|148511572|gb|ABQ78432.1| type II and III secretion system protein [Pseudomonas putida F1] Length = 621 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 64/437 (14%), Positives = 141/437 (32%), Gaps = 71/437 (16%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79 P E A + + + I+ +K + + + V + D Sbjct: 187 PVTLEFRDANLKTIFEVLSQVAGINFIFDKDLRPDMK---ATIFVREVRIEDAIALLLEQ 243 Query: 80 -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + + T+ ++ + + + ++ L D ++ + Sbjct: 244 NQLRQKIVNDNTVMVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 ++ V+ +T+ + ++ +++ ++ + + + + Sbjct: 299 DVFVDERLNTLTMRDTSDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 349 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 +G Q T + + + + S + Sbjct: 350 ----------------LDLGLQWPNTFGVLSDDGNPVS-----VLDQLKGISSSRISIAP 388 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308 + + ++A + I TLA P + + + A G + + SVT Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365 D G+ L PTV + +++ EVS R A T++ L G Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ + Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 564 Query: 426 DLSRPDDHYSVEDDAKA 442 Y D + Sbjct: 565 --------YQSPSDMEF 573 >gi|322614284|gb|EFY11215.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621652|gb|EFY18505.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624513|gb|EFY21346.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628844|gb|EFY25627.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633429|gb|EFY30171.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635995|gb|EFY32703.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639703|gb|EFY36388.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322650654|gb|EFY47059.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654733|gb|EFY51052.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658954|gb|EFY55207.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664479|gb|EFY60673.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668272|gb|EFY64429.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673748|gb|EFY69849.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677809|gb|EFY73872.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681361|gb|EFY77393.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683763|gb|EFY79773.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193848|gb|EFZ79051.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200318|gb|EFZ85400.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205574|gb|EFZ90539.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210085|gb|EFZ94988.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216388|gb|EGA01115.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221135|gb|EGA05566.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226957|gb|EGA11139.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230759|gb|EGA14877.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234890|gb|EGA18976.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238929|gb|EGA22979.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241629|gb|EGA25660.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248224|gb|EGA32160.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251192|gb|EGA35065.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256076|gb|EGA39814.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263211|gb|EGA46749.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264286|gb|EGA47792.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271112|gb|EGA54540.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 562 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 61/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + + LD F ++ALE Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 365 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526 >gi|183600572|ref|ZP_02962065.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827] gi|188019849|gb|EDU57889.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827] Length = 562 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 21/235 (8%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L + I ++ R L +G + ++G + F+ + Sbjct: 305 TRRRQVELSLWIIDITRSELDNLGVNWEVGTINTGNT--------------AFSFNRSTL 350 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + F + AL ++ ++ P L A F + K ++ Sbjct: 351 SNSTDFLLRVDALSKSGNGHIVSRPVLLTQENIPALFDNNTSFYAKL--QGERIATLEQV 408 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 YG ++ P + S ++ + + E S+ N +PS +T + Sbjct: 409 TYGTMVSVMPRISSGHQVEMEVNIEDGGEKQSKSGEVSNVEGLPSVNRTTINTVARIAQN 468 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++++ G ++ + + + IPLL IP++G LF ++ N+++ P L+ Sbjct: 469 SSLLIGGYTREQVVENESHIPLLGDIPLIGGLFSHTSVNKQKMVRLFLIQPRLLD 523 >gi|194448425|ref|YP_002046858.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359156|ref|ZP_02667567.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194406729|gb|ACF66948.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338023|gb|EDZ24787.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 556 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 61/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 151 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 198 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 199 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 252 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 253 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 311 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + + LD F ++ALE Sbjct: 312 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 359 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 360 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 417 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 418 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 477 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 478 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 520 >gi|200387736|ref|ZP_03214348.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928222|ref|ZP_03219422.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|199604834|gb|EDZ03379.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322544|gb|EDZ07741.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 514 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 61/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 210 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + + LD F ++ALE Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 317 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478 >gi|30524891|gb|AAP34336.1|AF499777_4 HrcC [Xanthomonas axonopodis pv. glycines] Length = 607 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 84/241 (34%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-------------GGKFVSEGG 243 + TI E+R ++ +G + + G GG Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGSQLGFNGALSGAATDGATTPAGG 429 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE + ++ P + + A Q + ++ Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489 Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + GV L P+V+ G++ L ++ E + +P + T Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606 Query: 421 P 421 P Sbjct: 607 P 607 >gi|330894456|gb|EGH27117.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. mori str. 301020] Length = 703 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 57/405 (14%), Positives = 128/405 (31%), Gaps = 42/405 (10%) Query: 45 GKGKKISIGLNKVIILQVPV--DVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQAN 98 G K + + + + P D QD++V A + + + + G + Sbjct: 148 GPAKYVELVRDYSKKVDTPEKGDKQDIIVFPLKYASAADRTIRYRDQELVVAGVASILQD 207 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLR--RFIADSNIRVEMVSDTVVLHGMVR---- 152 ++ + G+ + D++ ++ + + ++ + G+ + Sbjct: 208 LLDVRSRGQSIKGTDLIGRGGRGTGGLSGGDGQDTPSLPLNASGINTGALEQGLDQVLHY 267 Query: 153 --------------TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + + R + +K++ L+++ + + + Sbjct: 268 GSGGGGKSSGKSRSGGRATIRVPADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEI 326 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 I ++ R+ L ++ + + S G + + G S + + F Sbjct: 327 DAVILDIDRNELAELSSRWNFNAGSVGGGVNMF---------DAGTTSTMFIQNAGKFTA 377 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 LH LE + + P++ + Q S ++ G L Sbjct: 378 ELHTLEGNGSASVIGNPSILTLENQPGVIDFSRTEYLTAT--SERVANIEPITAGTSLQV 435 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 TP L ++ L + E + I PS R T + G++V+ G Sbjct: 436 TPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHG 495 Query: 376 DDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419 + +PLL IP +G LF++ E TP L+ Sbjct: 496 LEANDKVHKVPLLGDIPYIGKLLFQSRSRELSNRERLFILTPRLI 540 >gi|54294209|ref|YP_126624.1| type II protein secretion LspD [Legionella pneumophila str. Lens] gi|53754041|emb|CAH15514.1| type II protein secretion LspD [Legionella pneumophila str. Lens] Length = 791 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 66/430 (15%), Positives = 141/430 (32%), Gaps = 41/430 (9%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + P + I A N V K +I + + +IL++ D + S+ Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371 Query: 76 KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 + + G +G + + + + Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L T N + T + + + + + T + K Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRTLK 490 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 V++ L+I Q+ ++ +AEV + +G + G Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293 G + F+ ++AL R L+ P++ + + A G Q + Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350 ++++ T+ + + L+ P + I L+I + D + Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATSTTDNTTTPT 658 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ + Sbjct: 659 FNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718 Query: 411 FIAATPFLVK 420 + P +++ Sbjct: 719 MVFIKPIILR 728 >gi|268592383|ref|ZP_06126604.1| type III secretion outer membrane pore, YscC/HrcC family [Providencia rettgeri DSM 1131] gi|291312169|gb|EFE52622.1| type III secretion outer membrane pore, YscC/HrcC family [Providencia rettgeri DSM 1131] Length = 567 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 87/243 (35%), Gaps = 22/243 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++N L++ QV L + I ++ R L +G + ++G + Sbjct: 303 QLVNTLDMR-RRQVELSLWIIDITRSELDNLGVNWEVGTFNTG--------------TGS 347 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F+ + + F + AL + ++ P L A F + K Sbjct: 348 VSFNRSTLSNSQQFLLQIDALNKTGNGHIVSRPVLLTQENIPALFDNNTSFYAKL--QGE 405 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKAD 357 ++ YG ++ P + + + + + E + +P+ + Sbjct: 406 RIATLEQVTYGTMVSVMPRISAGNNVEMEVNIEDGAENRDSMGKTSSVEGLPAVNRTSIN 465 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + ++++ G ++ + + IP L +P +G LF +S N+++ P Sbjct: 466 TVARIAKDSSLLIGGYTREQYVENESKIPFLGDLPYVGGLFSHSSMNQQKMVRLFLIQPR 525 Query: 418 LVK 420 L+ Sbjct: 526 LLD 528 >gi|148358852|ref|YP_001250059.1| type II protein secretion LspD [Legionella pneumophila str. Corby] gi|296106898|ref|YP_003618598.1| type II protein secretion LspD [Legionella pneumophila 2300/99 Alcoy] gi|148280625|gb|ABQ54713.1| type II protein secretion LspD [Legionella pneumophila str. Corby] gi|295648799|gb|ADG24646.1| type II protein secretion LspD [Legionella pneumophila 2300/99 Alcoy] Length = 791 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 66/430 (15%), Positives = 141/430 (32%), Gaps = 41/430 (9%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + P + I A N V K +I + + +IL++ D + S+ Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371 Query: 76 KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 + + G +G + + + + Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L T N + T + + + + + T K Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRILK 490 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 V++ L+I Q+ ++ +AEV + +G + G Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293 G + F+ ++AL R L+ P++ + + A G Q + Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350 ++++ T+ + + L+ P + I L+I + + P+ Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 658 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ + Sbjct: 659 FNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718 Query: 411 FIAATPFLVK 420 + P +++ Sbjct: 719 MVFIKPIILR 728 >gi|161502058|ref|YP_001569170.1| hypothetical protein SARI_00075 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863405|gb|ABX20028.1| hypothetical protein SARI_00075 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 563 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 55/336 (16%), Positives = 116/336 (34%), Gaps = 50/336 (14%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD--TVVLHGMVRTIQD 156 + +G++ + L+ L++ A +I++ D ++++ G Sbjct: 234 MPAFSANGEKSKTANYAGGM---SLQEALKQNAAAGDIKIVAYPDTNSLLVKGT------ 284 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 +++ + + ++ L++A V L + I ++ + L+++G Sbjct: 285 AEQVHFI------------------EMLVKALDVAKRH-VELSLWIVDLNKSDLERLGAS 325 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 S + G + + S LD F ++ALE ++ P Sbjct: 326 WS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPV 373 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L A F + K + ++ YG ++ P + G+I + + E Sbjct: 374 LLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIED 431 Query: 337 SEPVI-----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + +P T +P G ++++ G +D + IP L KI Sbjct: 432 GNDTTPQTEITASVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKI 491 Query: 392 PILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 P +G LFR S N+ P +V P+ Sbjct: 492 PFIGGLFRYSSKNKSNVVRVFLIEPKEIVDPLTPDA 527 >gi|21241188|ref|NP_640770.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106496|gb|AAM35306.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306] Length = 607 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 84/241 (34%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-------------FGGKFVSEGG 243 + TI E+R ++ +G + + G GG Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGGQLGFNGALSGAATDGATTPAGG 429 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE + ++ P + + A Q + ++ Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489 Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + GV L P+V+ G++ L ++ E + +P + T Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606 Query: 421 P 421 P Sbjct: 607 P 607 >gi|52841551|ref|YP_095350.1| type II protein secretion LspD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628662|gb|AAU27403.1| type II protein secretion LspD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 791 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 66/430 (15%), Positives = 141/430 (32%), Gaps = 41/430 (9%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + P + I A N V K +I + + +IL++ D + S+ Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371 Query: 76 KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 + + G +G + + + + Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L T N + T + + + + + T K Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRILK 490 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 V++ L+I Q+ ++ +AEV + +G + G Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293 G + F+ ++AL R L+ P++ + + A G Q + Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350 ++++ T+ + + L+ P + I L+I + + P+ Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 658 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ + Sbjct: 659 FNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718 Query: 411 FIAATPFLVK 420 + P +++ Sbjct: 719 MVFIKPIILR 728 >gi|302129976|ref|ZP_07255966.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 699 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L++ + + + I ++ R+ L ++ + + S G GG + + Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + + F LHALE + + P++ + Q A S Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 A + G L P L ++ + + E + + PS R T Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417 + G++V+ G + IPLL IP +G LF++ + E TP Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534 Query: 418 LV 419 L+ Sbjct: 535 LI 536 >gi|293416358|ref|ZP_06658997.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B185] gi|291431714|gb|EFF04697.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B185] Length = 566 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 20/248 (8%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ LL++A V L + I ++ ++ L+Q+G + + Sbjct: 296 LVRLLDVAKRH-VELSLWIIDLNKNDLEQLGVAWG------------GSTSFSNKLDIAL 342 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + ++ LD F ++ALE+ R +++P L A F + K + Sbjct: 343 NQTLVSTLDGVHFLASVYALEKKNQARIVSKPVLMTQENVPAIFDNNRTFYTKLIGERN- 401 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGDMPSYRVRKADTT 359 +S+ YG ++ P + G I + + E + V G +P T Sbjct: 402 -SSLAHVTYGTMISVLPRFSADGEIEMSLNIEDGNEEKQSVSGNEDSVLPEVGRTHISTV 460 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF-L 418 +P G ++++ G +D + + IPLL IP++G LFR N+ P + Sbjct: 461 ARVPQGKSLLIGGYTRDSRTKDVQKIPLLGDIPLIGGLFRYENQNQNNVVRVFLIQPKEI 520 Query: 419 VKPVAMRD 426 + P+ Sbjct: 521 LDPLMPDA 528 >gi|194736395|ref|YP_002115850.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197300771|ref|ZP_02660996.2| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194711897|gb|ACF91118.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290685|gb|EDY30039.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 514 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 61/403 (15%), Positives = 136/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 210 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + + LD F ++ALE Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 317 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375 Query: 330 LRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + + +P T +P G ++++ G +D + Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478 >gi|162533078|ref|NP_791216.2| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato str. DC3000] gi|213968270|ref|ZP_03396414.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv. tomato T1] gi|301383405|ref|ZP_07231823.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato Max13] gi|302061709|ref|ZP_07253250.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato K40] gi|119388972|gb|AAO54911.2| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato str. DC3000] gi|213926908|gb|EEB60459.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv. tomato T1] Length = 699 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L++ + + + I ++ R+ L ++ + + S G GG + + Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + + F LHALE + + P++ + Q A S Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 A + G L P L ++ + + E + + PS R T Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417 + G++V+ G + IPLL IP +G LF++ + E TP Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534 Query: 418 LV 419 L+ Sbjct: 535 LI 536 >gi|237799995|ref|ZP_04588456.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022850|gb|EGI02907.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. oryzae str. 1_6] Length = 700 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 91/269 (33%), Gaps = 16/269 (5%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + S R +K++ L++ + + + I ++ R+ L ++ Sbjct: 281 RASIRVSADVRNNSVLIYDLPERKGMYQKLVKELDVP-RNLIEIDAVILDIDRNELAELS 339 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + + + GG + + G S + + F LHALE + + Sbjct: 340 SRWNF---------NAGSVSGGANLFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGN 390 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 P++ + Q A S A + G L P L ++ + Sbjct: 391 PSILTLENQPAVIDLSRTEYLTAT--SERAAEILPITAGTSLQVIPRSLDHDGKSQVQMI 448 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + E + + PS R T + G++V+ G + +PLL I Sbjct: 449 VDIEDGQIDVSTINDTQPSVRRGNVSTQAMIAEHGSLVIGGFHGLEANDRIHKVPLLGDI 508 Query: 392 PILGA-LFRNSRFNREETEIFIAATPFLV 419 P +G LF++ + E TP L+ Sbjct: 509 PYIGKLLFQSRSRELSQRERLFILTPRLI 537 >gi|330872930|gb|EGH07079.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 699 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L++ + + + I ++ R+ L ++ + + S G GG + + Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + + F LHALE + + P++ + Q A S Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 A + G L P L ++ + + E + + PS R T Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417 + G++V+ G + IPLL IP +G LF++ + E TP Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534 Query: 418 LV 419 L+ Sbjct: 535 LI 536 >gi|213425700|ref|ZP_03358450.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 505 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 57/316 (18%), Positives = 110/316 (34%), Gaps = 53/316 (16%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT L G V I+ +A+++++ Sbjct: 196 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 246 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 247 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 275 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 276 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 335 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + ++ YG ++ P + G+I + + E + +P Sbjct: 336 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 393 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP+L K+P++G+LFR S N+ Sbjct: 394 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRV 453 Query: 412 IAATPF-LVKPVAMRD 426 P +V P+ Sbjct: 454 FMIEPKEIVDPLTPDA 469 >gi|15834670|ref|NP_296429.1| type III secretion protein SctC [Chlamydia muridarum Nigg] gi|7190084|gb|AAF38934.1| type III secretion protein SctC [Chlamydia muridarum Nigg] Length = 672 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 318 INNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 377 Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253 + V + G G++ Sbjct: 378 KVAYASGLLSNTGVVDPLRNQTPPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 437 Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 + +L AL++ + P + A Q ASF G ++T Sbjct: 438 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 497 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + ++ D GV L T T+ + L+I+ +SE P A T Sbjct: 498 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 556 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D + ++ G+PLLS +P++ LF + R++ I I P ++ Sbjct: 557 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVI 616 Query: 420 KPVAMRDLSRPDDHYS 435 + + Y Sbjct: 617 SSFEEGTVLSNSEGYR 632 >gi|54297230|ref|YP_123599.1| type II protein secretion LspD [Legionella pneumophila str. Paris] gi|53751015|emb|CAH12426.1| type II protein secretion LspD [Legionella pneumophila str. Paris] Length = 791 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 66/430 (15%), Positives = 141/430 (32%), Gaps = 41/430 (9%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + P + I A N V K +I + + +IL++ D + S+ Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371 Query: 76 KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 + + G +G + + + + Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L T N + T + + + + + T K Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRILK 490 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 V++ L+I Q+ ++ +AEV + +G + G Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293 G + F+ ++AL R L+ P++ + + A G Q + Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350 ++++ T+ + + L+ P + I L+I + + P+ Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 658 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ + Sbjct: 659 FNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718 Query: 411 FIAATPFLVK 420 + P +++ Sbjct: 719 MVFIKPIILR 728 >gi|329942358|ref|ZP_08291168.1| bacterial type II and III secretion system family protein [Chlamydophila psittaci Cal10] gi|332287000|ref|YP_004421901.1| bacterial type II/III secretion system protein [Chlamydophila psittaci 6BC] gi|325507136|gb|ADZ18774.1| bacterial type II/III secretion system protein [Chlamydophila psittaci 6BC] gi|328815268|gb|EGF85256.1| bacterial type II and III secretion system family protein [Chlamydophila psittaci Cal10] gi|328914230|gb|AEB55063.1| general secretion pathway protein D, putative [Chlamydophila psittaci 6BC] Length = 885 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q G G Sbjct: 531 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 590 Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252 + ++ F + + + Sbjct: 591 KVAYASGLLSNTGLANPTKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 650 Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 S +L AL++ + P + A Q ASF G ++T Sbjct: 651 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 710 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + T ++ D GV L TV + L+I+ +SE P A T Sbjct: 711 TGTVTQNIEYEDIGVNLVVASTVAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 769 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 770 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 829 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 830 SSFEEGTKLTNKEGYR 845 >gi|317050393|ref|YP_004111509.1| type II and III secretion system protein [Desulfurispirillum indicum S5] gi|316945477|gb|ADU64953.1| type II and III secretion system protein [Desulfurispirillum indicum S5] Length = 506 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 19/241 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LD 252 QV ++ I EV + +G + S+ GG F GGD + V Sbjct: 260 KQVLIEAQIFEVVLNDSHSLGIDWTNAFSAGSGVGIIGQATGGSFGLPGGDMATGVVQYT 319 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSV 307 R +F +L + A + L+ P + ++ Q+A +SG + + Sbjct: 320 RNNFTGMLQVMRNAGNLEALSNPRIRVMNSQTAIISSGRITPFWTKRVDYSEVGGQINRI 379 Query: 308 TTHD-----YGVVLHFTPTVLSPGRIGLR--------IQTEVSEPVIGVNAGDMPSYRVR 354 T+D G+ + TP + G I L + + G P ++ Sbjct: 380 ETYDRRDVLSGISMGVTPVIAPDGSILLTVIPVSTNFEEIDQQTDSSGDLIVSAPVVNMK 439 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +A T + + +V+ GL+ ++ + + LS IP+LG LFR SR +E E+ I Sbjct: 440 EAGTIIRVQDNDMVVIGGLISTSTRRETQEVSGLSAIPLLGHLFRGSRDVQERRELVIFL 499 Query: 415 T 415 Sbjct: 500 R 500 >gi|297565761|ref|YP_003684733.1| type II and III secretion system protein [Meiothermus silvanus DSM 9946] gi|296850210|gb|ADH63225.1| type II and III secretion system protein [Meiothermus silvanus DSM 9946] Length = 771 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 25/253 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L+V I V +++++G + + + F + L Sbjct: 527 KQQVQLQVRIQAVNSSVIRELGLKWETISGGNLVASILEKGLSLIFDA-------TRSLA 579 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQ-----------------SASFTSGGQHLY 295 + L+ALE R +++ L SG A Sbjct: 580 SLNIRATLNALESQNLSRRISDANLLVESGYGNDTSDLRQANAAGAELKAGGKLLIVTTT 639 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + S G SV D G+ L P + G+I L + T+ E V A D V Sbjct: 640 ASTSQGGGQQSVREFDVGLTLRLRPRITPDGQIILEVYTQTGE-QPQVLAPDRTFLPVNS 698 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++ + G T+V+ GL++ + +PLL IPI+GALF+ + ++ E+ + T Sbjct: 699 TLSSFRIKDGQTVVMGGLVQTTTTNTENKVPLLGDIPIIGALFKQTTAENKQEELIVIIT 758 Query: 416 PFLVKPVAMRDLS 428 +VK Sbjct: 759 ANIVKEQQAATGQ 771 >gi|313847597|emb|CBY16585.1| putative general secretion protein [Chlamydophila psittaci RD1] Length = 907 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q G G Sbjct: 553 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 612 Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252 + ++ F + + + Sbjct: 613 KVAYASGLLSNTGLANPTKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 672 Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 S +L AL++ + P + A Q ASF G ++T Sbjct: 673 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 732 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + T ++ D GV L TV + L+I+ +SE P A T Sbjct: 733 TGTVTQNIEYEDIGVNLVVASTVAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 791 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 792 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 851 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 852 SSFEEGTKLTNKEGYR 867 >gi|7416860|dbj|BAA94087.1| hypersensitive response secretion protein [Xanthomonas oryzae pv. oryzae] Length = 605 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 94/289 (32%), Gaps = 20/289 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G D+ T S ++ L+ + + TI E+R Sbjct: 321 GGAELASDAPVIEADPRTNAILIRDRPERMQSYGTLIQQLDNR-PKLLQIDATIIEIRDG 379 Query: 209 ILKQIGFQHSIT-------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 ++ +G G A G GG + Sbjct: 380 AMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGAATDGATTPVGGTLTAVLGDAGRY 439 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 T + ALE + ++ P + + A Q + ++ + GV Sbjct: 440 LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVS 497 Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P+V+ G++ L ++ E + +P + T + G ++++AG Sbjct: 498 LRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEIKTQAFVNEGQSLLIAG 556 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + +P LSKIP+LG LF++ + + + TP +V P Sbjct: 557 YAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVSP 605 >gi|331015110|gb|EGH95166.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 699 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L++ + + + I ++ R+ L ++ + + S G GG + + Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNTGSVG---------GGANLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + + F LHALE + + P++ + Q A S Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 A + G L P L ++ + + E + + PS R T Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417 + G++V+ G + IPLL IP +G LF++ + E TP Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534 Query: 418 LV 419 L+ Sbjct: 535 LI 536 >gi|150026329|ref|YP_001297155.1| general secretion pathway protein D precursor [Flavobacterium psychrophilum JIP02/86] gi|149772870|emb|CAL44354.1| Putative bacterial general secretion pathway protein D precursor [Flavobacterium psychrophilum JIP02/86] Length = 720 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 86/243 (35%), Gaps = 19/243 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF- 254 + ++V + EV + + GF I + + ++ + + Sbjct: 477 ILIEVMLLEVSKSATIETGFSAGIGDKPVTTKGTVFPNSDIVLGAQTINKIINSFDGFGS 536 Query: 255 --------SFETVLHALERATAIRTLAEPTLTAISGQSASFTS---------GGQHLYKT 297 +F L A+E ++ + P L+ ++G A + Sbjct: 537 LNIGSVVPNFNLSLKAMESNGNLKIRSAPRLSTLNGHKAYLSIGETTYYVVTNQNFYGSQ 596 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356 + ++ + D + + P V G+I + I+ S V+ P R+ Sbjct: 597 IPQTSEVKNYQPIDAELSVTIMPLVSGDGQITMDIKVIQSSFNGQKVDKNAPPGINSREF 656 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + + + IVL GL + G+P+L++IPI+ LF + + ++ + P Sbjct: 657 TSIIRVKDQDLIVLGGLEEKVKNDSGSGVPILARIPIIKWLFSSRKREDSNKKLTVLIKP 716 Query: 417 FLV 419 ++ Sbjct: 717 TVI 719 >gi|89898772|ref|YP_515882.1| type III secretion general secretion pathway protein D [Chlamydophila felis Fe/C-56] gi|89332144|dbj|BAE81737.1| type III secretion general secretion pathway protein D [Chlamydophila felis Fe/C-56] Length = 908 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q G G Sbjct: 554 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 613 Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252 + +S F + + + Sbjct: 614 KVAYASGLLSNTGISNPTKSTIPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 673 Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 S +L AL++ + P + A Q ASF G ++T Sbjct: 674 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 733 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + T ++ D GV L T+ + L+I+ +SE P A T Sbjct: 734 TGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 792 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 793 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 852 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 853 SSFEEGTTLTNKEGYR 868 >gi|77919277|ref|YP_357092.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus DSM 2380] gi|77545360|gb|ABA88922.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus DSM 2380] Length = 767 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 72/398 (18%), Positives = 134/398 (33%), Gaps = 73/398 (18%) Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT-----LRRFIADSN 135 V + +T+ ++ + + ++ I+ ++H+E LR + Sbjct: 249 VLNSQTILVYPRT----------KEKEKQYEDRIIQVFYLSHIEAKKAVNLLRTILQTRK 298 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 I V + +V+ D +EL+ L S + + Sbjct: 299 IYVHDELNAIVMR-------DKPEVIELARQILEASD------------------RNDSE 333 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + + EV L IG + S S+G ++ G + D G Sbjct: 334 VVFDLELVEVSHRDLLDIGPKLSSYSISAGMGRTILDTDGNVVTNLVSDTLAAGGTTDTL 393 Query: 256 F-------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + LA P + + + A G + T + ST Sbjct: 394 VRSFSRLESFYTLPTATFDFAKTLIDSEILANPKIRVKNREKAKVHIGTKEPIVTTNIST 453 Query: 303 GA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVR 354 T+V D GV L P + I ++ EVS + G Sbjct: 454 TTGDVTSTNVQYIDVGVKLDVEPNIQLDDTIVTKLTLEVSSILEKEEIAGGGSALRISTT 513 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 A +++ L G ++ GL+++D+ ++ +P + IPI+G LF + ++EI ++ Sbjct: 514 NAGSSLILKDGERTIIGGLIRNDLSDTRDTLPFIGSIPIIGHLFTGRSKEKNKSEILLSI 573 Query: 415 TPFLVKPVAMRDLSRPD---------DHYSVEDDAKAF 443 TP +V+ V D+ RPD D + F Sbjct: 574 TPHIVRSV---DMPRPDVATIWSGGEDDLAPGARFARF 608 >gi|58579717|ref|YP_198733.1| hypothetical protein XOO0094 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84621739|ref|YP_449111.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|7350909|gb|AAC95122.2| HrpA [Xanthomonas oryzae pv. oryzae] gi|9711580|dbj|BAB07849.1| HrpA [Xanthomonas oryzae pv. oryzae] gi|24251284|gb|AAN46403.1| HrcC [Xanthomonas oryzae pv. oryzae] gi|50428343|dbj|BAD29980.1| HrcC [Xanthomonas oryzae pv. oryzae] gi|58424311|gb|AAW73348.1| HrcC protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365679|dbj|BAE66837.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|118076671|gb|ABK60047.1| HrcC [Xanthomonas oryzae pv. oryzae] Length = 605 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 94/289 (32%), Gaps = 20/289 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G D+ T S ++ L+ + + TI E+R Sbjct: 321 GGAELASDAPVIEADPRTNAILIRDRPERMQSYGTLIQQLDNR-PKLLQIDATIIEIRDG 379 Query: 209 ILKQIGFQHSIT-------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 ++ +G G A G GG + Sbjct: 380 AMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGAATDGATTPVGGTLTAVLGDAGRY 439 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 T + ALE + ++ P + + A Q + ++ + GV Sbjct: 440 LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVS 497 Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P+V+ G++ L ++ E + +P + T + G ++++AG Sbjct: 498 LRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEIKTQAFVNEGQSLLIAG 556 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + +P LSKIP+LG LF++ + + + TP +V P Sbjct: 557 YAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVSP 605 >gi|315918572|ref|ZP_07914812.1| general secretion pathway protein D [Fusobacterium gonidiaformans ATCC 25563] gi|313692447|gb|EFS29282.1| general secretion pathway protein D [Fusobacterium gonidiaformans ATCC 25563] Length = 419 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 68/435 (15%), Positives = 141/435 (32%), Gaps = 62/435 (14%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV------IIL 60 F ++ +F +LP E + + + E+ I I +++ + Sbjct: 14 ILFALICLFTLEEVCYAKELPKDIEMSDTTLREALDELEGCLGIKITVDESPKDPLNLFF 73 Query: 61 QVPVDVQDVLVSDPTKAD--VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 Q +++VL + V S L + +++ L Sbjct: 74 QEGQSIEEVLDMLGEITNKKVKKISNHEFLLEEVQI----------QKEEISKEYHLHYL 123 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 + L+ D I + + + ++E + Sbjct: 124 RSKEIYDALKDLFPDIKI---------------ANLDSRNQVIVVAE---------EKKI 159 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 K+M ++I G+ QV + I ++ +D+ ++GF S +K A G + Sbjct: 160 HEIDKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEES 218 Query: 239 VSEGG-------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 V G + + + L LE ++ + P++ G F Sbjct: 219 VGNSGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITE 278 Query: 292 QHLYKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-- 345 + + S + + G++L P + + L I E+S+ Sbjct: 279 EVIVGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQK 338 Query: 346 ------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 S R T + + + TI++ GL + + + +P LS IP LG LF+ Sbjct: 339 KDWNFNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFK 398 Query: 400 NSRFNREETEIFIAA 414 + ET+++I Sbjct: 399 SESKKDAETDMYIKI 413 >gi|257467448|ref|ZP_05631759.1| general secretion pathway protein D [Fusobacterium gonidiaformans ATCC 25563] Length = 435 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 68/435 (15%), Positives = 141/435 (32%), Gaps = 62/435 (14%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV------IIL 60 F ++ +F +LP E + + + E+ I I +++ + Sbjct: 30 ILFALICLFTLEEVCYAKELPKDIEMSDTTLREALDELEGCLGIKITVDESPKDPLNLFF 89 Query: 61 QVPVDVQDVLVSDPTKAD--VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 Q +++VL + V S L + +++ L Sbjct: 90 QEGQSIEEVLDMLGEITNKKVKKISNHEFLLEEVQI----------QKEEISKEYHLHYL 139 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 + L+ D I + + + ++E + Sbjct: 140 RSKEIYDALKDLFPDIKI---------------ANLDSRNQVIVVAE---------EKKI 175 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 K+M ++I G+ QV + I ++ +D+ ++GF S +K A G + Sbjct: 176 HEIDKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEES 234 Query: 239 VSEGG-------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 V G + + + L LE ++ + P++ G F Sbjct: 235 VGNSGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITE 294 Query: 292 QHLYKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-- 345 + + S + + G++L P + + L I E+S+ Sbjct: 295 EVIVGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQK 354 Query: 346 ------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 S R T + + + TI++ GL + + + +P LS IP LG LF+ Sbjct: 355 KDWNFNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFK 414 Query: 400 NSRFNREETEIFIAA 414 + ET+++I Sbjct: 415 SESKKDAETDMYIKI 429 >gi|294625827|ref|ZP_06704443.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599855|gb|EFF43976.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 607 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GG 243 + TI E+R ++ +G G G F G GG Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGG 429 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE + ++ P + + A Q + ++ Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489 Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + GV L P+V+ G++ L ++ E + +P + T Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606 Query: 421 P 421 P Sbjct: 607 P 607 >gi|16761675|ref|NP_457292.1| virulence associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143159|ref|NP_806501.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052440|ref|ZP_03345318.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213612699|ref|ZP_03370525.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|25512784|pir||AF0852 secretory protein (associated with virulence) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503976|emb|CAD06005.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138792|gb|AAO70361.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 562 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 57/316 (18%), Positives = 111/316 (35%), Gaps = 53/316 (16%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT L G V I+ +A+++++ Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSY 351 + ++ YG ++ P + G+I + + E + + +P Sbjct: 393 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP+L K+P++G+LFR S N+ Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRV 510 Query: 412 IAATPF-LVKPVAMRD 426 P +V P+ Sbjct: 511 FMIEPKEIVDPLTPDA 526 >gi|159024044|gb|ABW87272.1| HrcC [Xanthomonas fuscans subsp. fuscans] Length = 607 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GG 243 + TI E+R ++ +G G G F G GG Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGG 429 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE + ++ P + + A Q + ++ Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489 Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + GV L P+V+ G++ L ++ E + +P + T Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606 Query: 421 P 421 P Sbjct: 607 P 607 >gi|218961675|ref|YP_001741450.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730332|emb|CAO81244.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 472 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 32/256 (12%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-----------SSSGPSKSFAADFGGKFVSEG 242 Q+ ++V + EV + KQIG S + G + ++ G Sbjct: 191 QQIEIRVRLIEVHLNEAKQIGVDWSKLNHLTTILAEDPVNQYGTGLPYNYSDATGYLPHG 250 Query: 243 GDFSVKGVLDR-------------------FSFETVLHALERATAIRTLAEPTLTAISGQ 283 + D +F+ + L A + L + +TA++G+ Sbjct: 251 DPTDFGVIPDEQYFQRINGFHDIGHFSRQLTAFDVTIDWLLENNAAQLLTDTRVTALNGE 310 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 A+ G+ + V+ V + G++L+ TP V G I + I EVS V Sbjct: 311 LATM-HIGEVVPFVVTDKENQLQVERSETGIILNVTPKVNKDGNITMNINPEVSSVTELV 369 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +P +VR+ + V +P+ I++ GLL +I Q IPLL +P++G +F++ Sbjct: 370 GGY-IPRTKVRRVSSAVTVPNEHKIIVGGLLNSNITQKINKIPLLGDLPLIGKIFQHRYE 428 Query: 404 NREETEIFIAATPFLV 419 E T++ I TP LV Sbjct: 429 LVENTDLIIEITPRLV 444 >gi|171913118|ref|ZP_02928588.1| probable general secretion pathway protein D [Verrucomicrobium spinosum DSM 4136] Length = 888 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 67/292 (22%), Positives = 117/292 (40%), Gaps = 35/292 (11%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + L+ + + KV LL+ QV L I ++ Q+G + Sbjct: 538 RIIADPLANAIIVIGPKENQDKVDLLLDKLDRKSPQVYLATVIGQLTLSDGMQMGVDYLQ 597 Query: 220 TGSSSGPSKSFAA--------------------DFGGKFVSEGGDFSVKGVLDRFSFETV 259 S+G + ++ + ++ F++ G L S + Sbjct: 598 KFVSTGSNSGLSSAFIAGREEIITNNNVADMRDNLITTALANAKGFNIYGQLG-QSLDVF 656 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----------SSTGATSVTT 309 + ALE + L+ P++ A++ + A TSG S + T++T Sbjct: 657 VSALETTNNFKVLSRPSVFALNNKRAVITSGQSIPVPESSLANASSNNNGTGNVTTTITY 716 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGT 367 D + L P + G + LR+ V V ++P + TTV +P+G T Sbjct: 717 KDVVLKLEVIPLINPDGDVTLRVAQVNDTVVGNQIVAQNNVPIIGTEQIATTVTVPTGNT 776 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +VL GL+ + ++ EGIP+LS+IP LG LFR ++E E+ I P +V Sbjct: 777 VVLGGLITETDKKDTEGIPVLSRIPGLGRLFREDVTSKERKELVIFIQPMVV 828 >gi|254422445|ref|ZP_05036163.1| Bacterial type II and III secretion system protein [Synechococcus sp. PCC 7335] gi|196189934|gb|EDX84898.1| Bacterial type II and III secretion system protein [Synechococcus sp. PCC 7335] Length = 702 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 97/264 (36%), Gaps = 20/264 (7%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV + + + +V + G Q S + ++S V+ G Sbjct: 446 RRRQVAVNLRVIDVNLNDSDSFGSQFSFGLGDTAITQSGGIGLINFGVAGGALGI----- 500 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------ 305 F L A +++ + + +PTL GQ+A+ + + + Sbjct: 501 -ARQFLAQLEASVQSSNAKIVTDPTLVIQEGQTAAVQLTQEVVTNITTDIETTEVGVLRT 559 Query: 306 -SVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY---RVRKADTTV 360 + D G+ L + G + L + +S P N G + + + Sbjct: 560 VTFEKEDAGLNLQVQIDRIDDNGFVTLAVAPSISAPTDTFNIGTEEAVLLANRQLTSGQI 619 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G T+VL+G++++ + +P+L IP+LGALFRNS E+ + TP + Sbjct: 620 RVRDGQTLVLSGIIQESDRNTVTKVPILGDIPLLGALFRNSDRENIRRELIVLLTPQV-- 677 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFF 444 + D S Y +D + Sbjct: 678 -MNDSDQSVYGYGYVPSEDVQQLL 700 >gi|116747987|ref|YP_844674.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB] gi|116697051|gb|ABK16239.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB] Length = 636 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 7/249 (2%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--FAADFGGKFVSE 241 ++N L+ QV ++ I + ++ + +G G + S + F + Sbjct: 387 LLNRLD-RPTSQVLIEARIITLTSEVKRSLGMNLGFGGDTPNHSATVPFTDFLINSPPAN 445 Query: 242 GGDFSVKGVLDRFSF--ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 ++ ++ + + ALE A IR +A P + ++ A + G Q Y V Sbjct: 446 LFALNLAQMVGTTLLKVDLTISALETADEIRIMAAPRVLTMNNVKAVISQGVQIPYLKVG 505 Query: 300 SS-TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKAD 357 + + T D + L TP + ++ + I+ + EP V P RK Sbjct: 506 DTASNITGTDFKDAVLELAVTPHITPDHKVRMTIEAKQDEPSSTVTGAQGQPGIDTRKIS 565 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + + G IV+ G++++ + K P LS +PILG LF+++ + + EI I P Sbjct: 566 TELLVDDGNIIVIGGIIRNRDEAKKTATPGLSDVPILGRLFKSNEVDAQRNEILIFICPK 625 Query: 418 LVKPVAMRD 426 +V D Sbjct: 626 IVDVTKPSD 634 >gi|149200052|ref|ZP_01877077.1| ComE [Lentisphaera araneosa HTCC2155] gi|149136810|gb|EDM25238.1| ComE [Lentisphaera araneosa HTCC2155] Length = 813 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 103/304 (33%), Gaps = 54/304 (17%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSF 230 K++++ L Q++++ +V + +++GF TG + + + Sbjct: 493 TNTAANIQLIKRIIDELG-RPSAQISVETKFIDVDFNTTQELGFMWRWTGPRTPNHTLTG 551 Query: 231 AADFGGKFVSEGGD----------------------FSVKGVLDRFSFETVLHALERATA 268 F + V + ++ AL+++ Sbjct: 552 DRIFAQSNDGATAAERFDNNIRGINEIVTSQEGPVQLAADLVFGNQELQMMVRALDQSDT 611 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHF 318 L+ P SG + + T T D GV+L Sbjct: 612 SEVLSSPNAVTQSGNTVVLRVVEERFLPEEWEEAQLDADAIIPTTPTFGEARDIGVILEV 671 Query: 319 TP-TVLSPGRIGLRIQTEV-----------SEPVIGVNAGDMPSY--------RVRKADT 358 TP I + + + S+ ++ P++ +R+ +T Sbjct: 672 TPEVSADNNTISMDLNPQQVELLGYDTELNSDLTNFTDSITYPNFFNYAMPIVSIRQVET 731 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 ++ G T+++ GL+K+ + + + IP +S IP LG F+N E+T + I T L Sbjct: 732 RAQIWDGETLLIGGLVKETVYSVDDSIPYVSDIPYLGRFFQNKGERSEKTNLLIFVTGRL 791 Query: 419 VKPV 422 + PV Sbjct: 792 ISPV 795 >gi|294665979|ref|ZP_06731242.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604227|gb|EFF47615.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 607 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GG 243 + TI E+R ++ +G G G F G GG Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGG 429 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE + ++ P + + A Q + ++ Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489 Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + GV L P+V+ G++ L ++ E + +P + T Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606 Query: 421 P 421 P Sbjct: 607 P 607 >gi|254442891|ref|ZP_05056367.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] gi|198257199|gb|EDY81507.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] Length = 842 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 66/374 (17%), Positives = 114/374 (30%), Gaps = 94/374 (25%) Query: 142 SDTVVLHGMVRTIQDSQRAVELSE-----------TFLSQSGRNQYANSSSKKVMNLLN- 189 D V G+ Q + ++ + + S + +++ N+LN Sbjct: 435 GDRVRDQGVATDAQTIRNFLQQAGVDFVATEGSTLAYDGSSMIVTQTRRNIERIRNILNR 494 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------------------- 223 QV ++ E++ L ++GF I Sbjct: 495 YTDVKQVEIEAKFLEIQEGSLDELGFDWVIDERGSPNDPQYETGEVYRSSMRTLAQAAAP 554 Query: 224 --------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 +V G ++ + + AL + + Sbjct: 555 SSVSSSILVDGEVIDNIDAPDLPGSNLLGAGAVPFTNVIGNINSVNLNVAIRALSQQSGS 614 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----------------------GATS 306 L+ P +T +SG A + Y T S T Sbjct: 615 DLLSAPKVTVLSGNEAKINVSQEFRYPTRYSDTESDVGSTSGSLTGGSAGVTITPGTPED 674 Query: 307 VTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGD------------------ 347 T + GV L TP V I L + V+E V G Sbjct: 675 FVTRNVGVELAVTPIVEEDDYSITLDLNPRVTEFEGFVEYGGPSIAISGGRTVKTPSGFY 734 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P + VR+ +T V + G T+V+ G+ ++D+ + + IP L IP +G LFR+ + + Sbjct: 735 QPIFAVREVETKVTIWDGATVVMGGMTREDVVTVNDKIPFLGDIPFVGRLFRSEGESSAK 794 Query: 408 TEIFIAATPFLVKP 421 + I T LV P Sbjct: 795 RNLLIFVTANLVSP 808 >gi|307610026|emb|CBW99559.1| type II protein secretion LspD [Legionella pneumophila 130b] Length = 791 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 66/430 (15%), Positives = 142/430 (33%), Gaps = 41/430 (9%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + P + I A N V K +I + + +IL++ D + S+ Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371 Query: 76 KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 + + G +G + + + + Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L T N + T + + + + + T + K Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRTLK 490 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 V++ L+I Q+ ++ +AEV + +G + G Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293 G + F+ ++AL R L+ P++ + + A G Q + Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350 ++++ T+ + + L+ P + I L+I + + P+ Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 658 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ + Sbjct: 659 FNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718 Query: 411 FIAATPFLVK 420 + P +++ Sbjct: 719 MVFIKPIILR 728 >gi|289804655|ref|ZP_06535284.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 465 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 57/316 (18%), Positives = 111/316 (35%), Gaps = 53/316 (16%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT L G V I+ +A+++++ Sbjct: 156 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 206 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 207 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 235 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 236 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 295 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSY 351 + ++ YG ++ P + G+I + + E + + +P Sbjct: 296 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 353 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP+L K+P++G+LFR S N+ Sbjct: 354 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRV 413 Query: 412 IAATPF-LVKPVAMRD 426 P +V P+ Sbjct: 414 FMIEPKEIVDPLTPDA 429 >gi|213865044|ref|ZP_03387163.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 501 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 57/316 (18%), Positives = 111/316 (35%), Gaps = 53/316 (16%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT L G V I+ +A+++++ Sbjct: 192 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 242 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 243 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 271 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 272 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 331 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSY 351 + ++ YG ++ P + G+I + + E + + +P Sbjct: 332 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 389 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP+L K+P++G+LFR S N+ Sbjct: 390 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRV 449 Query: 412 IAATPF-LVKPVAMRD 426 P +V P+ Sbjct: 450 FMIEPKEIVDPLTPDA 465 >gi|188574359|ref|YP_001911288.1| HrpA type III secretion outer membrane pore, YscC/HrcC family [Xanthomonas oryzae pv. oryzae PXO99A] gi|188518811|gb|ACD56756.1| HrpA type III secretion outer membrane pore, YscC/HrcC family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 591 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 84/241 (34%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSIT-------------GSSSGPSKSFAADFGGKFVSEGG 243 + TI E+R ++ +G G A G GG Sbjct: 354 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGAATDGATTPVGG 413 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE + ++ P + + A Q + ++ Sbjct: 414 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 473 Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + GV L P+V+ G++ L ++ E + +P + T Sbjct: 474 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEIKTQA 530 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 531 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 590 Query: 421 P 421 P Sbjct: 591 P 591 >gi|262066840|ref|ZP_06026452.1| general secretion pathway protein D [Fusobacterium periodonticum ATCC 33693] gi|291379452|gb|EFE86970.1| general secretion pathway protein D [Fusobacterium periodonticum ATCC 33693] Length = 514 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 112/310 (36%), Gaps = 37/310 (11%) Query: 126 TLRRFIADSNIRV--EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 +L D ++V E + + V ++ + V +E + ++ + + Sbjct: 212 SLFNVSPDEVLKVLHETFGENI----KVSSLSKVNKLVVSAERDILENAISIIEDID--- 264 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVS 240 QV + I ++ ++ +++GF S S + Sbjct: 265 -------KNPKQVKISSQILDISNNLFEELGFDWVYKQNVASEERNSLTAIILGKAGLNG 317 Query: 241 EGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL---- 294 G ++ + S T L+ LE + + PTL SG+ F + + Sbjct: 318 IGSTLNIVRQFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVK 377 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV- 353 + + T + G+++ P + I L I E+S+ N ++ Sbjct: 378 TTRENKNDRHTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSG 437 Query: 354 -----------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 R T V + G TI++ GL K Q ++ IP+L IPI+ F+N+ Sbjct: 438 TYNSEGGSKVGRALTTKVRVKDGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTT 497 Query: 403 FNREETEIFI 412 RE ++++I Sbjct: 498 KKRENSDMYI 507 >gi|167033463|ref|YP_001668694.1| type II and III secretion system protein [Pseudomonas putida GB-1] gi|166859951|gb|ABY98358.1| type II and III secretion system protein [Pseudomonas putida GB-1] Length = 621 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 65/437 (14%), Positives = 139/437 (31%), Gaps = 71/437 (16%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV------ 80 P E A + + + I+ +K + + + V + D V Sbjct: 187 PVTLEFRDANLKTIFEVLSQVAGINFIFDKDLRPDMK---ATIFVREVRIEDAVALLLEQ 243 Query: 81 ------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + + T+ ++ + + + ++ L D ++ + Sbjct: 244 NQLRQKIVNDNTVMVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 ++ V+ +T+ + ++ +++ ++ + + + + Sbjct: 299 DVFVDERLNTLTMRDTPDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 349 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 +G Q T + + S+ Sbjct: 350 ----------------LDLGLQWPNTFGVLSNDGKPVSVLDQLKGIDSSRISI-----SP 388 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308 + + ++A I TLA P + + + A G + + SVT Sbjct: 389 APQAKINA--SDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365 D G+ L PTV + +++ EVS R A T++ L G Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ + Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 564 Query: 426 DLSRPDDHYSVEDDAKA 442 Y D + Sbjct: 565 --------YQSPSDMEF 573 >gi|330963059|gb|EGH63319.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. actinidiae str. M302091] Length = 649 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L++ + + + I ++ R+ L ++ + + S G GG + + Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + + F LHALE + + P++ + Q A S Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 A + G L P L ++ + + E + + PS R T Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417 + G++V+ G + IPLL IP +G LF++ + E TP Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534 Query: 418 LV 419 L+ Sbjct: 535 LI 536 >gi|262195825|ref|YP_003267034.1| general secretion pathway protein D [Haliangium ochraceum DSM 14365] gi|262079172|gb|ACY15141.1| general secretion pathway protein D [Haliangium ochraceum DSM 14365] Length = 842 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 27/255 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-- 250 QV ++ I EV+ D +G S + S Sbjct: 450 RRQVFIEAMILEVQTDSGLDLGASFHGGQLSDDGTLLLGGLQTSDLQSIVPGTLAASSGL 509 Query: 251 ----------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + SF + AL ++ + L+ P + + + A + G Sbjct: 510 LGGVLGPLLNTQELLGVSIPSFGVLFQALATSSNVNVLSSPHIVTTNNEEAEISVGQNIP 569 Query: 295 YKTVSS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Y++ S S SV D + L TP + + + L I E+S+ A Sbjct: 570 YQSGLSGLPTAGTGVSFPVQSVQRQDVALTLKITPHINASDMVTLEIDQEISDIASPDFA 629 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 G PS+ R TTV + +IV+ GL+ D + + +PLL +P+LG F+ + + Sbjct: 630 GLGPSWSKRTVKTTVVVRDQQSIVIGGLMSDRMTYNESKVPLLGDLPLLGYFFKFTERQK 689 Query: 406 EETEIFIAATPFLVK 420 +T + I TP+++K Sbjct: 690 SKTNLLILLTPYVIK 704 >gi|260772068|ref|ZP_05880985.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP 69.14] gi|260612935|gb|EEX38137.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP 69.14] Length = 573 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 70/421 (16%), Positives = 142/421 (33%), Gaps = 45/421 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86 + I + ++ ++ ++ + V Q VL V R Sbjct: 163 FQDIPVRNVLQLIADYNQFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 G ++ + + R L I S + +++ + Sbjct: 219 ------VEGNVILVAPKAELDLREKQQLEKARLAEELGELQSAIIKISFAKASDIAEMIG 272 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V + + T +++++ L+I + QV ++ I V Sbjct: 273 GTGAVNMLSERGSISIDERTNALLIRELPENIHVIREIISALDIPVK-QVQIEARIVTVN 331 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA--------------------------ADFGGKFVS 240 L ++G + ++ + + + + Sbjct: 332 EGNLDELGIRWGVSSTRGNNTVGGSIEGNLTGIGLYQPEDGSEMINNFLNVNLGATAANA 391 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 F V + + L A++R + ++ P L + + A G + Y S Sbjct: 392 SSIAFQVAKLGSGTLLDLELSAMQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLES-S 450 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADT 358 S+GAT+V + L TP + R+ L + P + G+ + ++ T Sbjct: 451 SSGATTVAFKKAVLSLQVTPQITPDNRLVLDLSVTQDRPGDIVKTGTGEAVAIHTQRIGT 510 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + +G T+VL G+ + I + +PLL +P+LGALFR S ++E+ I TP + Sbjct: 511 QVLVNNGETVVLGGIFQHSITNTVDKVPLLGDLPLLGALFRRSYQQMGKSELLIFVTPKV 570 Query: 419 V 419 V Sbjct: 571 V 571 >gi|62184688|ref|YP_219473.1| putative general secretion protein [Chlamydophila abortus S26/3] gi|62147755|emb|CAH63499.1| putative general secretion protein [Chlamydophila abortus S26/3] Length = 908 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q G G Sbjct: 554 VNNSIVVIGNQTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 613 Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252 + ++ F + + + Sbjct: 614 KVAYASGLLSNTGLANPAKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 673 Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 S +L AL++ + P + A Q ASF G ++T Sbjct: 674 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 733 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + T ++ D GV L T+ + L+I+ +SE P A T Sbjct: 734 TGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 792 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D ++ G+PLL+ IP+L LF + R++ I + P ++ Sbjct: 793 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLLRGLFSRTIDQRQKRNIMMFIKPKVI 852 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 853 SSFEEGTKLTNKEGYR 868 >gi|15835475|ref|NP_297234.1| general secretion pathway protein D [Chlamydia muridarum Nigg] gi|270285655|ref|ZP_06195049.1| general secretion pathway protein D [Chlamydia muridarum Nigg] gi|270289664|ref|ZP_06195966.1| general secretion pathway protein D [Chlamydia muridarum Weiss] gi|301337051|ref|ZP_07225253.1| general secretion pathway protein D [Chlamydia muridarum MopnTet14] gi|7190887|gb|AAF39657.1| general secretion pathway protein D [Chlamydia muridarum Nigg] Length = 759 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 101/269 (37%), Gaps = 6/269 (2%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + V ++V + E + ++ G G + A + + F Sbjct: 467 KKMVRIEVLLFERKLSSQRKSGLNLLRLGEEVCKQGTQAVSWANGGI-LEFLFKGGAKGI 525 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 S++ L +R A P++ ++ A + VSS Y Sbjct: 526 VPSYDFAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSSEKDKAQYNRAQY 584 Query: 313 GVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G+++ P + G+ + ++T+++ G N D P R V + G T++ Sbjct: 585 GIMIKILPVINIGEEDGKSFITLETDITFDSTGKNQADRPDVTRRNITNKVRIQDGETVI 644 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 + GL + ++GIP L ++P +G LF + +TE+F+ TP ++ PV + Sbjct: 645 IGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDATSDSQTEMFMFITPKILDNPVEEEEKL 704 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 S + + F V+ K+A Sbjct: 705 ECAFLASRPGENEDFLRAVVSGQQAAKQA 733 >gi|148263986|ref|YP_001230692.1| type II and III secretion system protein [Geobacter uraniireducens Rf4] gi|146397486|gb|ABQ26119.1| type II and III secretion system protein [Geobacter uraniireducens Rf4] Length = 796 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 72/386 (18%), Positives = 143/386 (37%), Gaps = 32/386 (8%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + T+ ++ KN + + + L + + +R + I V Sbjct: 244 KVLNENTIIIYTKNPEKTK-----QYEELFVQTFYLNKLEAKKAVNLIRTMLQVRKIYVN 298 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + +V+ I+ +Q+ +E ++ ++ SK +A Sbjct: 299 EEMNALVIRDTPDVIEVAQKILEANDLPDAEVVLEVEVIEISKNNAESFGLALSRYAVST 358 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 AE L + ++ + + + + ++ F G + + F+F Sbjct: 359 AAAAEGSSTFLSDV-LVPPVSTTPTNTTNTPTSNLLNYFRWRGFNGFLTVPNATFNFGKT 417 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVL 316 L TLA P + + + A F G + T SS TG + +V D GV L Sbjct: 418 LS------NSETLANPKIRVKNREKAKFNVGQRVPITTTSSPTGGGVSVNVQYVDVGVKL 471 Query: 317 HFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + PT+ + +++ EVS + + + R DT + L G T ++ Sbjct: 472 NAEPTIQLNNEVSIKLSLEVSSILSKEKVGSTDSLTTVVTIGTRNLDTVLSLKDGETSII 531 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 GL++D + K+ I LL IP++G L + ++E+ +A TP +V+ + Sbjct: 532 GGLMQDLKSKNKQKIVLLGDIPLIGPLLSQNDDTNNKSELVLAITPRIVRSI-------- 583 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKE 456 E D AF+ + ++ K Sbjct: 584 ---TIPEGDVAAFWSGKEDEPSTSKP 606 >gi|37520489|ref|NP_923866.1| hypothetical protein gll0920 [Gloeobacter violaceus PCC 7421] gi|35211483|dbj|BAC88861.1| gll0920 [Gloeobacter violaceus PCC 7421] Length = 632 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 15/249 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV +V I E+ +++ +I S+ + A G S F+ + R Sbjct: 382 RQVVFEVKIVELSDAGSRELNALRTIQSGSAVSPGNTAPLSLGGLFSPPTSFATFNDIAR 441 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------GATSV 307 V++ L R + + L I+GQ AS + T++ Sbjct: 442 AI--VVINGLITENKARVVTDTKLNTITGQKASIDVQTDINLILNQLTNVSGATVNNTTL 499 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVEL 362 +T G V+ TPTV + G + + E S P P+ RK + + Sbjct: 500 STLRAGTVVELTPTVQADGNVLAELSVESSVPQGTTTLTSSGTTVPPNIARRKVKNIILV 559 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL--VK 420 G T+ + GL++ +++ +P IP++G LF N+ + E++E+ + TP + V+ Sbjct: 560 KDGQTLEIGGLIQTTNREVITRVPFFGYIPLIGQLFSNTNVSLEQSELVVFITPRVRDVQ 619 Query: 421 PVAMRDLSR 429 P+ L Sbjct: 620 PLPDTKLPL 628 >gi|94496757|ref|ZP_01303332.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58] gi|94423770|gb|EAT08796.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58] Length = 599 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 66/413 (15%), Positives = 132/413 (31%), Gaps = 33/413 (7%) Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83 + I A + ++ + + + + + ++V V P A +V Sbjct: 168 PPVAAIAPGRAQPLTPGGIDPYELRVFYLRYARADDTTLHTGDREVRV--PGVATIVARV 225 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 G G + ++ L+ + + + R N D Sbjct: 226 MGDRLPIGTVGGS------YGAQQVRQSVPRLMGKGLDSVAPDASRSTPYDN----DEED 275 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-------YANSSSKKVMNLLNIAGEDQV 196 + L G + +Q + N + + ++ L++A V Sbjct: 276 YLGLPGQEPIVVQAQPVPQAGPRITVDPSLNAVIVRDRPENMPAYEGLVRSLDVA-PQIV 334 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGP---------SKSFAADFGGKFVSEGGDFSV 247 L+ TI ++ D L+++G G + + D G Sbjct: 335 ELEATIIDINVDRLRELGINWRFRSGDWGALFGGDIVRRTGNPLTDSLNTGSVNRGLSLS 394 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + F + ALE A + ++ P L +S A F + + Sbjct: 395 GIIGANNEFIARISALEEKGAAKVVSRPQLVTLSNVEAVFDRTRTFYVRVA--GDRQVDL 452 Query: 308 TTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSG 365 G VL P VL G+ +R+ V + + +P +T + G Sbjct: 453 FNVTAGTVLRVNPHVLVDNGQPRIRMVVNVEDGALLDGTVDRIPVVERASVNTQALIAEG 512 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +++L GL + + IP+L +IP+LG LF++ R+ E +P + Sbjct: 513 ESLLLGGLTVNSDMDAETAIPVLGQIPVLGELFKSRSKRRQHVERLFLISPRI 565 >gi|166714017|ref|ZP_02245224.1| HrcC [Xanthomonas oryzae pv. oryzicola BLS256] gi|61219456|gb|AAX40633.1| HrcC [Xanthomonas oryzae pv. oryzicola] Length = 607 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 83/241 (34%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSIT-------------GSSSGPSKSFAADFGGKFVSEGG 243 + TI E+R ++ +G G A G GG Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGAATDGATTPVGG 429 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE + ++ P + + A Q + ++ Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489 Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + GV L P+V+ ++ L ++ E + +P + T Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNSQMRLDVRIEDGQL-GSNTVDGIPVITSSEIKTQA 546 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP+LG LF++ + N + TP +V Sbjct: 547 FVNEGQSLLIAGYAYDADETNLNAVPGLSKIPLLGNLFKHRQKNGSRMQRLFLLTPHVVS 606 Query: 421 P 421 P Sbjct: 607 P 607 >gi|295111311|emb|CBL28061.1| Type II secretory pathway, component PulD [Synergistetes bacterium SGP1] Length = 193 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 3/178 (1%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F+ ALE + LA P++ I G A + Y + G + +T G Sbjct: 8 FDGAFRALEERGKGKALASPSVITIDGMEARVELTQDYPYISERDDAGNPTWSTQTVGPQ 67 Query: 316 LHFTPTVLSPGRIGL---RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 + TP V G I L EV + + G MP R T V + G V+ G Sbjct: 68 MTMTPRVGRDGVINLALDLETGEVIQMITGSTGEQMPRTSKRHVTTNVRVRDGEPFVIGG 127 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 L D+ + + IP+L ++P+LG LF + +T++ + P+++ P Sbjct: 128 LFSDNKSRTRNRIPILGQLPLLGELFTYRQDEHRKTQVVMLVVPYVLDTPDAAIEQEP 185 >gi|86607978|ref|YP_476740.1| type IV pilus secretin PilQ [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556520|gb|ABD01477.1| type IV pilus secretin PilQ, putative [Synechococcus sp. JA-2-3B'a(2-13)] Length = 696 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 65/421 (15%), Positives = 147/421 (34%), Gaps = 71/421 (16%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 A +N+ ++ IS+ + + + + + + +T+++ Sbjct: 301 AGLNVVLNDVPPDLTISLDVQDSPLQETFNFILRL-----KQLQAQ-RRGQTVFVGQNLP 354 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G +++ + Q + D+ + LE L + V+ ++++ + G + Sbjct: 355 GVTGILVRNYRVNQAVATDL-----ASRLEEVLNAVAPGAQFVVDERTNSITVIG--NSR 407 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 Q A ++++ L++ QV + + ++R D + + Sbjct: 408 QQDIAAAQIAQ----------------------LDVR-RRQVLISLRAVDIRLDKNESLS 444 Query: 215 FQHSITGSSSGPSKSFAADFGG------------KFVSEGGDFSVKGVLDRFS-----FE 257 + A+FGG G S+ G+ + + Sbjct: 445 VNLGGASGNFALGTLGDANFGGRPLNQPAGSSVSSIGPAGPSGSITGIFNTLNRLQQSLA 504 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVT 308 + + + + L +P + G S+ + + + + Sbjct: 505 LRVQSAIQNGTGKILTDPKVVVADGGSSRISIATSVPVNVETITIPQGENQPPVVTQRLQ 564 Query: 309 THDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGV-------NAGDMPSYRVRKAD-TT 359 D GV+L + + G + L IQ E+S PV + + R+ + Sbjct: 565 REDAGVILDVSEVRIDDNGFVTLTIQPEISIPVPSQILGGGDFAGILLFNIDRRQLQASQ 624 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T ++AGL++D + +P L +P+LGALFR+ N E E+ TP+++ Sbjct: 625 LRLRDGQTFIIAGLIQDRDIVDVQKVPFLGDLPLLGALFRSQSVNNERNEVVFMLTPYIM 684 Query: 420 K 420 Sbjct: 685 D 685 >gi|289663772|ref|ZP_06485353.1| HrcC protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668194|ref|ZP_06489269.1| HrcC protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 593 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GG 243 + TI EVR ++ +G G G F G GG Sbjct: 356 QIDATIIEVRDGAMQDLGVDWRFHSQHTDVQTGDGRGGQLGFDGALSGAATQGTMTPVGG 415 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE + ++ P + + A Q + ++ Sbjct: 416 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 475 Query: 304 ATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + GV L P+V+ S G++ L ++ E + +P + T Sbjct: 476 D--LYNLSAGVSLRVLPSVVPGSSNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 532 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP++G LF++ + + + TP +V Sbjct: 533 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLVGNLFKHRQKSGSRMQRLFLLTPHVVS 592 Query: 421 P 421 P Sbjct: 593 P 593 >gi|192384691|dbj|BAG49616.1| HrcC [Pseudomonas viridiflava] Length = 671 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 15/274 (5%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G ++R V + + ++++ L+ + V + I ++ R Sbjct: 253 RGGESKSNSNRRVVADVRNNAVLIYDDPEKRDTYQQLVQQLD-QPSNLVEIDAVILDIDR 311 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L + + S S S G S + D F + ALE Sbjct: 312 SQLSSLESRWSARAGSVNFGSSLL----------TGGSSTLFINDFDRFFADIQALEGQG 361 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P++ + Q A T +V G L P ++ + Sbjct: 362 VASVIARPSVLTLENQPAVIDFSRTAYITTT--GERVANVQPVTAGTSLRVIPRTIAGEQ 419 Query: 328 IG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 ++ ++ + + D P + T + ++V+ G D+ + ++ + Sbjct: 420 PNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKV 479 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P+L +P++GALF + R E TP LV Sbjct: 480 PILGSLPVIGALFTSKRHEVSRRERLFILTPRLV 513 >gi|297623561|ref|YP_003704995.1| type II and III secretion system protein [Truepera radiovictrix DSM 17093] gi|297164741|gb|ADI14452.1| type II and III secretion system protein [Truepera radiovictrix DSM 17093] Length = 560 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 7/229 (3%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 E Q+ ++V I EV + +++G + F+ F + Sbjct: 338 RPERQINVQVRIQEVSANASERLGLNLTAAMDR------FSTTLFSGEGGLSFVFDAQRA 391 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + F+ +L E R + + +T ++ A+ +GG + G T Sbjct: 392 IAGFNLGAILDVYEEQGLSRRVDDSNVTVLNNGVATLQAGGTQYNYVRDEAGGVTRDE-I 450 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 YGV++ FTP V + + L + V P + G + + RKA++ + L G T+VL Sbjct: 451 PYGVIVGFTPQVANNNSVILDLCARVDTPSLRDAEGRITEFLTRKANSRITLQPGQTVVL 510 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GLL++ + +P L IP++G LF + TE+ I T ++ Sbjct: 511 GGLLQNQVVASNRSVPGLGDIPVVGNLFSTNTATELNTELLIIVTANVL 559 >gi|85060069|ref|YP_455771.1| type III secretion apparatus InvG [Sodalis glossinidius str. 'morsitans'] gi|45504769|gb|AAS66859.1| InvG [Sodalis glossinidius] gi|84780589|dbj|BAE75366.1| type III secretion apparatus InvG [Sodalis glossinidius str. 'morsitans'] Length = 546 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 64/438 (14%), Positives = 140/438 (31%), Gaps = 53/438 (12%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL- 70 + L + P+ + +++A G+ + + + +++ + +L Sbjct: 113 AVVALRTILPAALR-HFLQQAQLHDPRYPLRGDPGGRLLYLS-GPPMYVELVENAARLLD 170 Query: 71 -----VSDPTKADVVVHS-----PRTMYLFGKN---VGQANVILIGHDGKQMLNLDILIE 117 + D +A+V+ S R L G+ G A VI + M Sbjct: 171 KEPDGIHDREQAEVIPLSYTFVGDRYYALRGEKVTIPGIATVI-----ERLMRREGRSAV 225 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D+ + + +R E ++ + Sbjct: 226 ADVPAPLTPAEALLPVAEVRAE----------QDVEPLPLWPVQVIANPSNNSLLVKGTG 275 Query: 178 NSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 + ++ L+I V L + I ++ + L Q G + G Sbjct: 276 RQVQFVRNLVRSLDIPKRH-VELSLWIIDLEKSDLDQFGINWQ--------GGARIGQRG 326 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G +++G LD F + AL R ++ P + A F + Sbjct: 327 GVTLNQGS----YSALDGTRFVASILALARKHRANIVSRPIILTQENVPAIFDNNRTFYT 382 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE----VSEPVIGVNAGDMPSY 351 + + + + YG ++ P +I + + E VS + D+P Sbjct: 383 RLL--GERSVELREVTYGTMISVLPRFSGDDQIEMVLTIEDGGEVSRRQSNPGSDDLPEV 440 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D+++ + +P L IP++G LFR+ + Sbjct: 441 GRTHISTVARVPRGKSLLIGGYTRDELRGNRARLPGLGSIPLIGGLFRHRIDKQANMVRV 500 Query: 412 IAATPF-LVKPVAMRDLS 428 P + +P+ + Sbjct: 501 FLIQPREISEPLQQDAAA 518 >gi|12331294|emb|CAC24709.1| putative HrcS protein [Pseudomonas fluorescens] Length = 674 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 90/269 (33%), Gaps = 16/269 (5%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + S R + +K++ L++ + + + I ++ R+ L ++ Sbjct: 258 RASIRVSADVRNNAVLIYDLPERKALYEKLVKQLDVP-RNLIEIDAVILDIDRNELAELA 316 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + + GG + + G S + + F L ALE + + Sbjct: 317 SRWNFNSGNFS---------GGANLFDAGASSTLFLQNAGKFSAQLRALEGNGSASVIGN 367 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 P++ + Q A S A ++ G L P L +I + Sbjct: 368 PSILTLENQPAVIDLSRTEYLTAT--SERAANILPITAGTSLQVIPRSLDHDGKPQIQMI 425 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + E + + PS R T + G++V+ G + IPLL I Sbjct: 426 VDIEDGQIDVSTINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDI 485 Query: 392 PILGA-LFRNSRFNREETEIFIAATPFLV 419 P +G LF++ + TP L+ Sbjct: 486 PYIGKLLFQSHNRELSQRGRLFILTPRLI 514 >gi|51103213|gb|AAT96354.1| hrcC [Pseudomonas viridiflava] Length = 671 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 15/274 (5%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G ++R V + + ++++ L+ + V + I ++ R Sbjct: 253 RGGESKSNSNRRVVADVRNNAVLIYDDPEKRDTYQQLVQQLD-QPSNLVEIDAVILDIDR 311 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L + + S S S G S + D F + ALE Sbjct: 312 SQLSSLESRWSARAGSVNFGSSLL----------TGGSSTLFINDFDRFFADIQALEGQG 361 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P++ + Q A T +V G L P ++ + Sbjct: 362 VASVIARPSVLTLENQPAVIDFSRTAYITTT--GERVANVQPVTAGTSLRVIPRTIAGEQ 419 Query: 328 IG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 ++ ++ + + D P + T + ++V+ G D+ + ++ + Sbjct: 420 PNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKV 479 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P+L +P++GALF + R E TP LV Sbjct: 480 PILGSLPVIGALFTSKRHEVSRRERLFILTPRLV 513 >gi|254229573|ref|ZP_04922986.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25] gi|151937946|gb|EDN56791.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25] Length = 458 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 14/233 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + QV ++ I E +++G + S A F + + Sbjct: 236 RPQKQVFIEAVITETELGDSQEVGVNMDLALSE--------AGFVSQPTAIKKAVDNLLF 287 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATS 306 + F ++ A+ + + L+ P + + + T G + T Sbjct: 288 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 347 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + D GV L P V+ + + S+ V + R T V++ Sbjct: 348 IERKDVGVSLEVVPHVIGDHVVL--QIMQKSDSVTDSSIASDIITNTRTLQTVVKVKDRQ 405 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 TI L GL+ + + G+P+L +P+LGALFR+ + N + E+ + ++ Sbjct: 406 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 458 >gi|238757842|ref|ZP_04619024.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia aldovae ATCC 35236] gi|238703827|gb|EEP96362.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia aldovae ATCC 35236] Length = 484 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 55/283 (19%), Positives = 101/283 (35%), Gaps = 21/283 (7%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--------GEDQVTLK 199 G T S A + F + +N A + +N+ + + Sbjct: 202 RGSAPTTNTSSPATQGLPMFSADPRQN--AVIVRDRSVNMAGYRKLISELDQRPQMIEIS 259 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 VTI +V + Q+G S S G + SF S G + + SF Sbjct: 260 VTIIDVDAGDISQLGIDWSAAVSMGGGTLSF-----NGPDSNTGGGFSTVISNTPSFMAR 314 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + L++P++ ++ A K + + G +L T Sbjct: 315 LVALEKNSHAYILSQPSVVTLNNIQAVLDKNITFYTKL--EGDKVAKLESITTGSLLRVT 372 Query: 320 PTVLSP-GRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P +L G+ + + + + + +P + + + L +G +++L G + Sbjct: 373 PRLLEDKGKQNIMLSLNIQDGQQNAPISQSEPLPQVQNSEIASQATLQAGQSLLLGGFKQ 432 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 D Q++ IPLL IPI+G LFR+ + Sbjct: 433 DKQVQVQNKIPLLGDIPIIGHLFRSDINQTNSVIRLFLIKATV 475 >gi|325927686|ref|ZP_08188914.1| HrcC protein [Xanthomonas perforans 91-118] gi|325541887|gb|EGD13401.1| HrcC protein [Xanthomonas perforans 91-118] Length = 607 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 95/289 (32%), Gaps = 20/289 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G D+ T S ++ L+ + + TI E+R Sbjct: 323 GGAELASDAPVIEADPRTNAILIRDRPERMQSYGTLIQQLDNR-PKLLQIDATIIEIRDG 381 Query: 209 ILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GGDFSVKGVLDRFS 255 ++ +G G G F G GG + Sbjct: 382 AMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGGTLTAVLGDAGRY 441 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 T + ALE + ++ P + + A Q + ++ + GV Sbjct: 442 LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVS 499 Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P+V+ G++ L ++ E + +P + T + G ++++AG Sbjct: 500 LRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQAFVNEGQSLLIAG 558 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + IP LSKIP++G LF++ + + + TP +V P Sbjct: 559 YAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVVSP 607 >gi|78045991|ref|YP_362166.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|462304|sp|P80151|HRPA1_XANEU RecName: Full=Hypersensitivity response secretion protein hrpA1; Flags: Precursor gi|398109|gb|AAA27603.1| hrpA1 [Xanthomonas campestris] gi|984886|gb|AAB08464.1| HrpA1 [Xanthomonas euvesicatoria] gi|78034421|emb|CAJ22066.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 607 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 95/289 (32%), Gaps = 20/289 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G D+ T S ++ L+ + + TI E+R Sbjct: 323 GGAELASDAPVIEADPRTNAILIRDRPERMQSYGTLIQQLDNR-PKLLQIDATIIEIRDG 381 Query: 209 ILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GGDFSVKGVLDRFS 255 ++ +G G G F G GG + Sbjct: 382 AMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGGTLTAVLGDAGRY 441 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 T + ALE + ++ P + + A Q + ++ + GV Sbjct: 442 LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVS 499 Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P+V+ G++ L ++ E + +P + T + G ++++AG Sbjct: 500 LRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQAFVNEGQSLLIAG 558 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + IP LSKIP++G LF++ + + + TP +V P Sbjct: 559 YAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVVSP 607 >gi|238796118|ref|ZP_04639629.1| Possible type III secretion system protein [Yersinia mollaretii ATCC 43969] gi|238720063|gb|EEQ11868.1| Possible type III secretion system protein [Yersinia mollaretii ATCC 43969] Length = 556 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 86/262 (32%), Gaps = 22/262 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L + I +V R + +G + G F+ + D Sbjct: 301 RSQVELSLWIIDVVRSKVDDLGVRWEAGSIGVGGG--------------TVTFNRSTLTD 346 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F + A+ ++ R ++ P + A F + + ++ Y Sbjct: 347 SSMFLAQIDAISKSGNARIVSRPVILTQENVPAMFDNNTSFYTRV--EGERVATLEQVTY 404 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGT 367 G ++ P + + + + + E + +P +T + + Sbjct: 405 GTMISVLPRLSAGNSVEMEVNIEDGGLSRDKSGKVADVEGLPQVNRTNINTVARVGRNNS 464 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +++ G +D ++ + IPLL IP++G LF+ N+++ P L+ D Sbjct: 465 LLIGGYTRDQVEDSESQIPLLGDIPLVGNLFKYRAHNQQKMIRIFLIQPRLLDENEAWDG 524 Query: 428 SRPDDHYSVEDDAKAFFFNRVN 449 + D+ + V Sbjct: 525 RQFSDN-ERLTQHDSQLHGTVE 545 >gi|296123921|ref|YP_003631699.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] gi|296016261|gb|ADG69500.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] Length = 1469 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 60/393 (15%), Positives = 124/393 (31%), Gaps = 78/393 (19%) Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 ++ N+ ++ A T +S +++ + ++ T++ +R V + Sbjct: 928 RERKNVVFKLKNSPALAVSTAVTQFVNSQLQLSQQNPNLI-----STVEQLEREVVVVPE 982 Query: 167 FLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQI----------- 213 + S ++ L+ QV ++ I EV D + + Sbjct: 983 TGTNSLLISATPRYYDEITRLVMELDQAPRQVIIQALIVEVTLDNVDEFGVELGLQDSVL 1042 Query: 214 ------------------------------------GFQHSITGSSSGPSKSFAADFGGK 237 GF + + G + + G Sbjct: 1043 FDRSVVDDLVTLTETTTSPNGTQTTTQRVVSQTAAPGFLFNNPNTPLGNNTTINPSSVGS 1102 Query: 238 ----------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 ++ G + S ++ AL ++ L+ P + + Q A Sbjct: 1103 QGLSSFSLGRVNNDLGYGGLVLSAGSESVNVLIRALASRRRLQVLSRPQIRTLDNQQAQI 1162 Query: 288 TSGGQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----- 338 G Q + G++L TP + G I + + E S+ Sbjct: 1163 QVGQQVPIVDGVQIGATGLANPQIRQDQAGIILTVTPRISPDGTIVMELIAEKSQFRGNG 1222 Query: 339 -----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 N + P + A T + +P+G T+V+ G++ + + +P + IPI Sbjct: 1223 VPIFTDATNGNVIESPIKDISAARTAISVPNGQTVVMGGMITATDETSERKVPFIGDIPI 1282 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +G LFR + TE+ I TP ++ A + Sbjct: 1283 VGHLFRYDSKSHVRTELLIFLTPRVISSDADSE 1315 >gi|170289478|ref|YP_001739716.1| type II and III secretion system protein [Thermotoga sp. RQ2] gi|170176981|gb|ACB10033.1| type II and III secretion system protein [Thermotoga sp. RQ2] Length = 387 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 95/237 (40%), Gaps = 7/237 (2%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K + ++I QV + V + EV +D ++G SG + V+ Sbjct: 154 EKDLEKIDIPIP-QVKISVIVTEVSKDYSNELGLNSLDYSFGSGQEFNENWSATLGLVTG 212 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + L LE + A+P + SG+ AS G+ + + Sbjct: 213 LINVQTDVFG---QILAQLKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLQAE 268 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + + D GV + P V+ + L + +VS + + + TT+ Sbjct: 269 GAVSRIESIDVGVSIDIQPRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLF 326 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G T+V++G +D Q G+P+L+KIP++ LF + + E++I + Sbjct: 327 LKNGQTVVISGATIEDNAQTNSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKAEI 383 >gi|76817445|ref|YP_335577.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1710b] gi|76581918|gb|ABA51392.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710b] Length = 630 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223 ++ L+I + ++ I E+ D+L++IG S Sbjct: 369 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 427 Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + A + G + + AL+ + ++ A P + + Sbjct: 428 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATL 487 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339 A + + K ++ + + GV L P ++ G +++ V++ Sbjct: 488 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 545 Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 546 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 605 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 606 RYHSDSQNHMERVFLLSPRIIDP 628 >gi|269968410|ref|ZP_06182426.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269826958|gb|EEZ81276.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 450 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 14/233 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + QV ++ I E +++G + S A F + + Sbjct: 228 RPQKQVFIEAVITETELGDSQEVGVNMDLALSE--------AGFVSQPTAIKKAVDNLLF 279 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATS 306 + F ++ A+ + + L+ P + + + T G + T Sbjct: 280 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 339 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + D GV L P V+ + + S+ V + R T V++ Sbjct: 340 IERKDVGVSLEVVPHVIGDHVVL--QIMQKSDSVTDSSIASDIITNTRTLQTVVKVKDRQ 397 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 TI L GL+ + + G+P+L +P+LGALFR+ + N + E+ + ++ Sbjct: 398 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 450 >gi|206889986|ref|YP_002248061.1| type II protein secretion protein-like protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741924|gb|ACI20981.1| type II protein secretion protein-like protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 538 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 98/257 (38%), Gaps = 30/257 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGD 244 QV ++ + EV + G S S G + S + G Sbjct: 280 SRQVLIEAKVIEVALSKSLKYGIDWSFLREWTHGTHTWSIGGATSGFTNVIGSGDPYSKI 339 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F +++ AL +RTL+ P ++ ++GQ++ FT G + + + + S Sbjct: 340 QFSLTTTAIKEFSSLIKALGEFGDVRTLSNPRVSIMNGQTSLFTVGRNYSFISKAQSNVT 399 Query: 305 T------------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIG 342 T + G+++ P + G I L I VS Sbjct: 400 TSGTGSPIITYTVETSNLLSGLIIGIVPYIDEKGEISLTITPIVSNLIEMRSATFGSSGA 459 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +P +R+ TTV++ G I++ G++K + + +PLL IP++G LF++ Sbjct: 460 ETTIQLPRVDLRELSTTVKVKDGEIIIIGGMIKKEESFSENKMPLLGDIPVVGELFKSKD 519 Query: 403 FNREETEIFIAATPFLV 419 TE+ I P ++ Sbjct: 520 KEETNTELVILLQPRII 536 >gi|31742526|gb|AAK35045.2|AF330136_1 type II protein secretion LspD [Legionella pneumophila 130b] Length = 730 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 66/430 (15%), Positives = 142/430 (33%), Gaps = 41/430 (9%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + P + I A N V K +I + + +IL++ D + S+ Sbjct: 254 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 310 Query: 76 KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 + + G +G + + + + Sbjct: 311 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 370 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L T N + T + + + + + T + K Sbjct: 371 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRTLK 429 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 V++ L+I Q+ ++ +AEV + +G + G Sbjct: 430 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 477 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293 G + F+ ++AL R L+ P++ + + A G Q + Sbjct: 478 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 537 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350 ++++ T+ + + L+ P + I L+I + + P+ Sbjct: 538 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 597 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ + Sbjct: 598 FNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 657 Query: 411 FIAATPFLVK 420 + P +++ Sbjct: 658 MVFIKPIILR 667 >gi|82795284|gb|ABB91653.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tagetis] Length = 699 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 16/265 (6%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R + +K++ L++ + + + I ++ R+ L ++ + + Sbjct: 284 RVSADVRNNAVLIYDLPERKAMYEKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWN 342 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + GG + + G S + + F LHALE + + P++ Sbjct: 343 FNAGNVS---------GGASLFDAGTSSTMFIQNASKFSAELHALEGNGSASVIGNPSIL 393 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A S A + G L P L ++ + + E Sbjct: 394 TLENQPAVIDLSRTEYLTAT--SERAAEILPITAGTSLQVIPRSLDHDGKPQVQMIVDIE 451 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + + PS R T + G++V+ G + IPLL IP +G Sbjct: 452 DGQIDVSTINDTQPSVRRGNVSTQAVIAEHGSLVVGGFHGLEANDRIHKIPLLGDIPYIG 511 Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419 LF++ + E TP L+ Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536 >gi|227357599|ref|ZP_03841952.1| type III secretion system protein [Proteus mirabilis ATCC 29906] gi|227162309|gb|EEI47313.1| type III secretion system protein [Proteus mirabilis ATCC 29906] Length = 571 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 83/254 (32%), Gaps = 22/254 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV + + I ++ + +G + S + F Sbjct: 318 KRQVEMSLWIIDISKSKADSLGVNWQGSYGSGKNTFFFNTASLSAV-------------S 364 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 FSF + + AL + ++ P L A F + + S+ + + Sbjct: 365 GFSFLSKIKALSEEGEAKMVSRPILLTQENTPAIFDNNTTFYTQI--KGERVASLESTTF 422 Query: 313 GVVLHFTPTVLSPGR-----IGLRIQTEV--SEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G ++ P + + + I L E + +P T + G Sbjct: 423 GTMISVLPRISNTNQEIEMIINLEDGAEKKSDDEDREEGIEKLPVINRTNISTVARVSEG 482 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 G++++ G ++D + + IP LS IP++G F N ++ P L+ Sbjct: 483 GSLLIGGYTREDNIKAENRIPFLSAIPLVGRAFSYQSDNNKKMVRIFMLQPRLLDKTDTH 542 Query: 426 DLSRPDDHYSVEDD 439 L +H + D Sbjct: 543 GLDSLTEHPFLPMD 556 >gi|281413054|ref|YP_003347133.1| type II and III secretion system protein [Thermotoga naphthophila RKU-10] gi|281374157|gb|ADA67719.1| type II and III secretion system protein [Thermotoga naphthophila RKU-10] Length = 387 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 95/237 (40%), Gaps = 7/237 (2%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + ++I QV + V + EV +D ++G SG + V+ Sbjct: 154 EEDLKKIDIPIP-QVKISVIVTEVSKDYSNELGLNSLDYSFGSGQEFNENWSATLGLVTG 212 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + L LE + A+P + SG+ AS G+ + + Sbjct: 213 LINVQTDVFG---QILAQLKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLQAE 268 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + + D GV + P V+ + L + +VS + + + TT+ Sbjct: 269 GAVSRIESIDVGVSIDIQPRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLF 326 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G T+V++G +D Q G+P+L+KIP++ LF + + E++I + Sbjct: 327 LKNGQTVVISGATIEDNAQTNSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383 >gi|237803001|ref|YP_002888195.1| general secretion pathway protein D [Chlamydia trachomatis B/Jali20/OT] gi|231274235|emb|CAX11029.1| general secretion pathway protein D [Chlamydia trachomatis B/Jali20/OT] Length = 760 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174 +++A L + ++ DT V+ + + + + + + Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432 Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217 + + K L+ + + V ++V + E + ++ G Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273 G + A + + GG S++ L +R A Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330 P++ ++ A + VSS YG+++ P + G+ + Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++T+++ G N D P R V + G T+++ GL + ++GIP L + Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 +P +G LF + +TE+F+ TP ++ P + + + F V Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726 Query: 450 KIYGPKEASEVEGQNYKG 467 K+A E + G Sbjct: 727 GQQAAKQAIERKESTVWG 744 >gi|29839808|ref|NP_828914.1| type III secretion protein SctC [Chlamydophila caviae GPIC] gi|29834155|gb|AAP04792.1| type III secretion protein SctC [Chlamydophila caviae GPIC] Length = 909 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 58/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q G G Sbjct: 555 VNNSIVVIGNQTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 614 Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252 + ++ F + + + Sbjct: 615 KVAYASGLLSNTGLANPAKATAPPLKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 674 Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 S +L AL++ + P + A Q ASF G ++T Sbjct: 675 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 734 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + T ++ D GV L T+ + L+I+ +SE P A T Sbjct: 735 TGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 793 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 794 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 853 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 854 SSFEEGTTLTNKEGYR 869 >gi|497225|gb|AAA74040.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 563 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 95/251 (37%), Gaps = 21/251 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + ++ L++A V L + I ++ + L+++G S G + Sbjct: 292 EMLVKALDVAKRH-VELSLWIVDLNKSDLERLGTSWS------------GTVTIGDKLGV 338 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S LD F ++ALE ++ P +T+ SA F + K + Sbjct: 339 SLNQSSISTLDGSRFIAAVNALEEKKQATVVSAPGITSSGKCSAIFDNNRTFYTKLIGER 398 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKA 356 ++ YG ++ P + G+I + + E + + +P Sbjct: 399 N--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLI 456 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T +P G ++++ G +D + IP L K+P++G+LFR S N+ P Sbjct: 457 STIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEP 516 Query: 417 F-LVKPVAMRD 426 +V P+ Sbjct: 517 KEIVDPLTPDA 527 >gi|255317692|ref|ZP_05358938.1| general secretion pathway protein D [Chlamydia trachomatis 6276s] Length = 760 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 59/385 (15%), Positives = 128/385 (33%), Gaps = 33/385 (8%) Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETF 167 ++ +++A L + ++ DT V+ + + + + Sbjct: 366 YHIKHSDPQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSS 425 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDIL 210 + + + + K L+ + + V ++V + E + Sbjct: 426 VKEGSAKYGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQ 485 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERA 266 ++ G G + A + + GG S++ L Sbjct: 486 RKSGLNLLRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQ 540 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL--- 323 +R A P++ ++ A + VSS YG+++ P + Sbjct: 541 EDVRINASPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGE 599 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G+ + ++T+++ G N D P R V + G T+++ GL + ++ Sbjct: 600 EDGKSFITLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRD 659 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKA 442 GIP L ++P +G LF + +TE+F+ TP ++ P + + + Sbjct: 660 GIPFLGELPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDD 719 Query: 443 FFFNRVNKIYGPKEASEVEGQNYKG 467 F V K+A E + G Sbjct: 720 FLRALVAGQQAAKQAIERKESTVWG 744 >gi|51103060|gb|AAT96206.1| HrcC [Pseudomonas viridiflava] Length = 697 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 85/265 (32%), Gaps = 20/265 (7%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R + +K++ L++ + + + I ++ R+ L ++ + + Sbjct: 286 RVSADVRNNAVLIYDLPDRKAMYEKLIKELDVP-RNLIEIDAVILDIDRNELAELASRWN 344 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G S + + F LHALE + + P++ Sbjct: 345 FKSGGVNMF-------------DAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSIL 391 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A S ++ G L P L ++ L + E Sbjct: 392 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 449 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + + D PS R T + G++V+ G + IPLL IP +G Sbjct: 450 DGQIDVSDINADQPSVRKGNVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIG 509 Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419 LF++ E TP L+ Sbjct: 510 KLLFQSRSREINHRERLFILTPRLI 534 >gi|167947465|ref|ZP_02534539.1| general secretion pathway protein D [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 241 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 91/239 (38%), Gaps = 30/239 (12%) Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVL---- 251 ++ IAEV D K +G Q + GS SG + + G +S+ + GVL Sbjct: 2 LVEAIIAEVSFDKTKDLGVQWIVDGSPSGNTAPVGIINLGTPKISDIAGAAAAGVLPSIP 61 Query: 252 ---------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 F ++ ALE ++ L+ P++ + Q A + Sbjct: 62 SGTLIGLGKFFXPPGSGVDFAMLIRALESDSSSNILSTPSILTLDNQEAEIVVAKNVPFL 121 Query: 297 TVSSS---------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AG 346 T + ++ D G+ L TP + I L I+ EVS + Sbjct: 122 TGQYASTGASSTSVNPFQTIQRQDVGLTLRVTPQINEGNAIQLSIEQEVSSIDPTTSAGT 181 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 R T V + TIVL GL+ + +QQ+ E +PLL IP +G LFR + Sbjct: 182 TDIVTNKRTIKTVVMVEDSHTIVLGGLIDEQLQQVDERVPLLGDIPGVGVLFRARNNQQ 240 >gi|158334571|ref|YP_001515743.1| secretion system protein [Acaryochloris marina MBIC11017] gi|158304812|gb|ABW26429.1| secretion system protein [Acaryochloris marina MBIC11017] Length = 682 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 54/291 (18%), Positives = 96/291 (32%), Gaps = 26/291 (8%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 V + T ++ ++ +++ QV + V +V K Sbjct: 374 EVVADARTNTITLIGTPRKVETATALLTRMDVRQR-QVAINVKFIDVNLLKGKLSNADLQ 432 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL------ERATAIRTL 272 + S G ++ ++ F L + + L Sbjct: 433 FRANDSLGIGFRPDANGRGGLTSIFGSGTVPIVGSGLFTLTETFLGNLFVSIQNNDAKIL 492 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS------------SSTGATSVTTHDYGVVLHFT- 319 PTL G SA Q V + + +T + GV+L+ Sbjct: 493 TNPTLLVQEGSSAQVNLTEQVFTGFVQRVSSSGSTAGATTDSTSTEPNIQNAGVILNVVV 552 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADT-TVELPSGGTIVLAGL 373 + G + L + EVS + + R+ +T V L G TIVL G+ Sbjct: 553 DHIDDNGFVTLNLSPEVSSLSGRTFVDALSGDTAFLLQQRRVETGKVRLRDGQTIVLTGI 612 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 ++D + +P+L IP+LG LFR R+ +E+ + TP +V Sbjct: 613 IQDQDRVDVSKVPILGDIPLLGRLFRRENKTRQRSELVVLVTPQIVDDSDQ 663 >gi|76789309|ref|YP_328395.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13] gi|76167839|gb|AAX50847.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13] Length = 760 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174 +++A L + ++ DT V+ + + + + + + Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432 Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217 + + K L+ + + V ++V + E + ++ G Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273 G + A + + GG S++ L +R A Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330 P++ ++ A + VSS YG+++ P + G+ + Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++T+++ G N D P R V + G T+++ GL + ++GIP L + Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 +P +G LF + +TE+F+ TP ++ P + + + F V Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726 Query: 450 KIYGPKEASEVEGQNYKG 467 K+A E + G Sbjct: 727 GQQAAKQAIERKESTVWG 744 >gi|15605301|ref|NP_220087.1| general secretion pathway protein D [Chlamydia trachomatis D/UW-3/CX] gi|3329013|gb|AAC68174.1| Gen. Secretion Protein D [Chlamydia trachomatis D/UW-3/CX] gi|297748702|gb|ADI51248.1| General secretion pathway protein D [Chlamydia trachomatis D-EC] gi|297749582|gb|ADI52260.1| General secretion pathway protein D [Chlamydia trachomatis D-LC] Length = 760 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174 +++A L + ++ DT V+ + + + + + + Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432 Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217 + + K L+ + + V ++V + E + ++ G Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273 G + A + + GG S++ L +R A Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330 P++ ++ A + VSS YG+++ P + G+ + Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++T+++ G N D P R V + G T+++ GL + ++GIP L + Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 +P +G LF + +TE+F+ TP ++ P + + + F V Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726 Query: 450 KIYGPKEASEVEGQNYKG 467 K+A E + G Sbjct: 727 GQQAAKQAIERKESTVWG 744 >gi|255311391|ref|ZP_05353961.1| general secretion pathway protein D [Chlamydia trachomatis 6276] gi|296436106|gb|ADH18280.1| general secretion pathway protein D [Chlamydia trachomatis G/9768] gi|296437034|gb|ADH19204.1| general secretion pathway protein D [Chlamydia trachomatis G/11222] gi|296437966|gb|ADH20127.1| general secretion pathway protein D [Chlamydia trachomatis G/11074] gi|297140467|gb|ADH97225.1| general secretion pathway protein D [Chlamydia trachomatis G/9301] Length = 760 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174 +++A L + ++ DT V+ + + + + + + Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432 Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217 + + K L+ + + V ++V + E + ++ G Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273 G + A + + GG S++ L +R A Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330 P++ ++ A + VSS YG+++ P + G+ + Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++T+++ G N D P R V + G T+++ GL + ++GIP L + Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 +P +G LF + +TE+F+ TP ++ P + + + F V Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726 Query: 450 KIYGPKEASEVEGQNYKG 467 K+A E + G Sbjct: 727 GQQAAKQAIERKESTVWG 744 >gi|15836348|ref|NP_300872.1| general secretion protein D [Chlamydophila pneumoniae J138] gi|8979189|dbj|BAA99023.1| general secretion protein D [Chlamydophila pneumoniae J138] Length = 754 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 9/258 (3%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSEGGDFSVKG 249 + V ++V + E + ++ G G G S S + G + S Sbjct: 460 KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGS 519 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + ++ L +R A P++ ++ A + VSS Sbjct: 520 SI-VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEM-SIAVSSDKDKAQYNR 577 Query: 310 HDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG+++ P + G+ + ++T+++ G N D P R V + G Sbjct: 578 AQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGE 637 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425 T+++ GL + +GIP L IP +G LF S + TE+F+ TP +++ PV + Sbjct: 638 TVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQ 697 Query: 426 DLSRPDDHYSVEDDAKAF 443 + S + + + Sbjct: 698 ERKEEALLSSRPGEREEY 715 >gi|167906931|ref|ZP_02494136.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei NCTC 13177] Length = 588 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 97/263 (36%), Gaps = 27/263 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223 ++ L+I + ++ I E+ D+L++IG S Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385 Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + A + G + ++AL+ + ++ A P + + Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVNALQSTSKVKIDASPLVATL 445 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339 A + + K ++ + + GV L P ++ G +++ V++ Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503 Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|126445154|ref|YP_001062980.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 668] gi|126224645|gb|ABN88150.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 668] Length = 588 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223 ++ L+I + ++ I E+ D+L++IG S Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385 Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + A + G + + AL+ + ++ A P + + Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339 A + + K ++ + + GV L P ++ G +++ V++ Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503 Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|218892331|ref|YP_002441198.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa LESB58] gi|218772557|emb|CAW28340.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa LESB58] Length = 600 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%) Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250 ++V +I ++ + L Q+G S G G G S+ Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + L+ + + PTL A + + + Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG +L TP V++ G I L + E S+ +P+ DT + G Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++++ G+ +D++ Q + +P L IP LGALFR + + P LV Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLVD 505 >gi|53722417|ref|YP_111402.1| type III secretion system protein [Burkholderia pseudomallei K96243] gi|167820148|ref|ZP_02451828.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 91] gi|52212831|emb|CAH38865.1| putative type III secretion system protein [Burkholderia pseudomallei K96243] Length = 588 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223 ++ L+I + ++ I E+ D+L++IG S Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385 Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + A + G + + AL+ + ++ A P + + Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339 A + + K ++ + + GV L P ++ G +++ V++ Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503 Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|77918480|ref|YP_356295.1| putative secretion pathway protein [Pelobacter carbinolicus DSM 2380] gi|77544563|gb|ABA88125.1| putative secretion pathway protein [Pelobacter carbinolicus DSM 2380] Length = 606 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 52/334 (15%), Positives = 107/334 (32%), Gaps = 44/334 (13%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTI 202 G Q+ A+ L+ + + A S + ++N + +QV L+V I Sbjct: 278 GEQSRQQEDDEAL-LAVLTVFKRNNCIVARSLDEGLLNEMGRIIEALDTPTNQVLLEVRI 336 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 Q+ + G G ++ + D F + Sbjct: 337 L--------QLNLNDGFESFFEFEYEGGDNTLGLLGTKALGATTLNYLFDNDRFRARIAL 388 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------------TSVTT 309 E+ + ++ P L A + F G + + +S + Sbjct: 389 YEKEGRLEVVSTPFLMAANNSKVEFFVGEETPLRGEVTSETTTIKDTGTTLTTFTQEIEE 448 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------------MPSYRVRKA 356 + G + T + + G + L E+S P + + + + Sbjct: 449 EELGTDVEMTTFINADGTVTLDFDAEISSPQLAYSTVQAVNDITGEILEYPIDGTTKSEI 508 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + SG +I + G++++ I +P+L IP +G FR + +TE I TP Sbjct: 509 KAILSARSGQSIAIGGIIRETIDDSIAKVPVLGDIPGVGFFFREVEKTKSKTETVILLTP 568 Query: 417 FLV-KPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++ P +S+ + + + R N Sbjct: 569 HVIMHPALAGQVSQ--EFLGRKSSHEQVTVGREN 600 >gi|282899176|ref|ZP_06307153.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis raciborskii CS-505] gi|281195931|gb|EFA70851.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis raciborskii CS-505] Length = 522 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 100/245 (40%), Gaps = 19/245 (7%) Query: 192 GEDQVTLKVTIAEVRR------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 QV + + I +V + G + + G + + S Sbjct: 276 RRRQVKVNLKIIDVNLWGIQNYNSSFSFGIGDNFFSNDQGIATFNFGNQRPFTGSGSVPA 335 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------V 298 S+ G+ +R F L A + L +P+L GQ+A+ Q + + Sbjct: 336 SLGGLPNR--FLAFLQAQVTNGNAKILTDPSLIVQEGQNANVKLTQQVIGQERITRIDTP 393 Query: 299 SSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRK 355 +S + + G+ ++ + G + L + V PV + G + R Sbjct: 394 GNSREERIIEKEEVGLTVNVRVERIDDNGFVSLSVAPVVKSPVNSESPGAGKVTLIAERS 453 Query: 356 ADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 ++ + L G T++L+G+++D + + +PLL IP+LGALFR++ +RE E+ + Sbjct: 454 LNSGLIRLRDGQTLLLSGIIQDQDRTVVTKVPLLGDIPLLGALFRSTNKDRERREVIVLL 513 Query: 415 TPFLV 419 TP ++ Sbjct: 514 TPRII 518 >gi|15618724|ref|NP_225010.1| general secretion protein D [Chlamydophila pneumoniae CWL029] gi|16752225|ref|NP_445593.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39] gi|33242175|ref|NP_877116.1| general secretion pathway protein D precursor [Chlamydophila pneumoniae TW-183] gi|4377127|gb|AAD18953.1| General Secretion Protein D [Chlamydophila pneumoniae CWL029] gi|7189969|gb|AAF38829.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39] gi|33236686|gb|AAP98773.1| general secretion pathway protein D precursor [Chlamydophila pneumoniae TW-183] Length = 754 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 9/258 (3%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSEGGDFSVKG 249 + V ++V + E + ++ G G G S S + G + S Sbjct: 460 KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGS 519 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + ++ L +R A P++ ++ A + VSS Sbjct: 520 SI-VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEM-SIAVSSDKDKAQYNR 577 Query: 310 HDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG+++ P + G+ + ++T+++ G N D P R V + G Sbjct: 578 AQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGE 637 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425 T+++ GL + +GIP L IP +G LF S + TE+F+ TP +++ PV + Sbjct: 638 TVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQ 697 Query: 426 DLSRPDDHYSVEDDAKAF 443 + S + + + Sbjct: 698 ERKEEALLSSRPGEREEY 715 >gi|291086622|ref|ZP_06356285.2| type III secretion outer membrane pore, YscC/HrcC family [Citrobacter youngae ATCC 29220] gi|291067473|gb|EFE05582.1| type III secretion outer membrane pore, YscC/HrcC family [Citrobacter youngae ATCC 29220] Length = 505 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 48/302 (15%), Positives = 110/302 (36%), Gaps = 23/302 (7%) Query: 130 FIADSNIRVEMVSDTVVL-HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL- 187 I + ++++ + G T ++ + + + Q A + +N+ Sbjct: 205 VIPGVVSVLREMNNSQAVNSGATPTQLNAGQQTVDNNGPTFSADPRQNAVVVRDRDINMP 264 Query: 188 LNIAGEDQ-------VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 + Q + + V+I +V + L +G + G + + + Sbjct: 265 MYQRLISQLDHRQDAIEITVSIIDVNAEDLGALGIDWAANADIGGMNLQLNTNL-----A 319 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 GG ++ + + F + ALE+ + + L++P++ ++ A K V Sbjct: 320 SGGGYATSVINNGSDFMVKVSALEQKSQAKILSQPSVVTLNNVQAVLDKNTTFYTKLV-- 377 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGR----IGLRIQTE---VSEPVIGVNAGDMPSYRV 353 + + G ++ TP V+ + L + + + V A MP + Sbjct: 378 GDKIAQLASITSGTLMQVTPRVVKDDEGTAEVLLLLSIQDGSQQQSSAVVAADAMPQVQN 437 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + DT L SG +++L G ++D + IP+L I +G F++ + +T Sbjct: 438 SEIDTQATLKSGQSLLLGGFIQDQDIVTERKIPILGDIYWIGNFFKSKETTKIQTVRLFL 497 Query: 414 AT 415 Sbjct: 498 IK 499 >gi|254240060|ref|ZP_04933382.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa 2192] gi|126193438|gb|EAZ57501.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa 2192] Length = 600 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%) Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250 ++V +I ++ + L Q+G S G G G S+ Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + L+ + + PTL A + + + Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG +L TP V++ G I L + E S+ +P+ DT + G Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++++ G+ +D++ Q + +P L IP LGALFR + + P L+ Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 505 >gi|51103005|gb|AAT96152.1| HrcC [Pseudomonas viridiflava] Length = 697 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 85/265 (32%), Gaps = 20/265 (7%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R + +K++ L++ + + + I ++ R+ L ++ + + Sbjct: 286 RVSADVRNNAVLIYDLPDRKAMYEKLIKELDVP-RNLIEIDAVILDIDRNELAELASRWN 344 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G S + + F LHALE + + P++ Sbjct: 345 FKSGGVNMF-------------DAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSIL 391 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A S ++ G L P L ++ L + E Sbjct: 392 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 449 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + + D PS R T + G++V+ G + IPLL IP +G Sbjct: 450 DGQIDVSDINADQPSVRKGNVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIG 509 Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419 LF++ E TP L+ Sbjct: 510 KLLFQSRSREINHRERLFILTPRLI 534 >gi|313110403|ref|ZP_07796289.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa 39016] gi|310882791|gb|EFQ41385.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa 39016] Length = 604 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%) Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250 ++V +I ++ + L Q+G S G G G S+ Sbjct: 278 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 337 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + L+ + + PTL A + + + Sbjct: 338 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 395 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG +L TP V++ G I L + E S+ +P+ DT + G Sbjct: 396 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 455 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++++ G+ +D++ Q + +P L IP LGALFR + + P L+ Sbjct: 456 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 509 >gi|34498052|ref|NP_902267.1| type III secretion system EscC protein [Chromobacterium violaceum ATCC 12472] gi|34103907|gb|AAQ60267.1| type III secretion system EscC protein [Chromobacterium violaceum ATCC 12472] Length = 495 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + + V I +V L +G S + S G SF +G D + Sbjct: 267 RKPALIEVSVMIIDVNSQDLSALGIDWSASASIGGNGISF-----NSAGQQGSDNFSTVI 321 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + F L+AL++ + L+ P++ + A K + + + + Sbjct: 322 SNTGGFMVKLNALQQKAKAQILSRPSVVTLDNTQAVLDRNITFYTKLL--AEKVAKLESI 379 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGG 366 G +L TP ++ G + L + + V+ +P + T L +G Sbjct: 380 STGSLLRVTPRLVDEGGQRNVMLTLVIQDGRQAGTVSQHEPLPQTLNAEVSTQTLLKAGQ 439 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +++L G ++D+ + + IPLL IP++G LFR+++ N T Sbjct: 440 SLLLGGFVQDEHSEGESKIPLLGDIPLIGKLFRSTQKNSRSTVRLFLIK 488 >gi|237738589|ref|ZP_04569070.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31] gi|229424072|gb|EEO39119.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31] Length = 514 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 93/241 (38%), Gaps = 21/241 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFVSEGGDFSVKG 249 QV + I ++ ++ +++GF + + S + G ++ Sbjct: 267 PKQVKISSQILDISNNLFEELGFDWVYRQNVASEERNSLTAIILGKAGLNGVGSSLNIVR 326 Query: 250 VLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTG 303 + S T L+ LE + + PTL SG+ F + + + + Sbjct: 327 QFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENKNDR 386 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353 T + G+++ P + I L I E+S+ N ++ Sbjct: 387 HTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSGTYNSEGGSK 446 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V + +G TI++ GL K Q ++ IP+L IPI+ F+N+ RE ++++ Sbjct: 447 VGRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENSDMY 506 Query: 412 I 412 I Sbjct: 507 I 507 >gi|171912205|ref|ZP_02927675.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM 4136] Length = 759 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 93/258 (36%), Gaps = 29/258 (11%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSGPSKSFAADFGGKFVSE 241 Q+ L I E + G ++ + + + + Sbjct: 444 KRPPQIILSAIIGEFTTGKDFRFGLDWVRTLEQVNDNLVIGGINKTSTTETNAMTDLAAL 503 Query: 242 GGDFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G L + L+ LE + L P +T ++ + A+ ++G Q Sbjct: 504 GNVADFLPALQGLTVYGKIGKHLNVFLNTLEESDRFHVLQRPYVTTLNHKKATISTGQQL 563 Query: 294 LYKTVSSSTGA----------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--I 341 + S+G ++ + L P + + L + + Sbjct: 564 AIPGQTYSSGIGSDPDTNGFVSNTQYIPAELKLDIVPHIYDKNEVKLEFVQQNLDIASYT 623 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 ++ +P+ + TV +P+G TI+L GL+ + + K G+P+LS+IP++ LF ++ Sbjct: 624 TISGNQVPNLSTQTLSNTVVVPNGATIILGGLITERDRNNKSGVPVLSRIPLVKHLFGST 683 Query: 402 RFNREETEIFIAATPFLV 419 +E E+ I P +V Sbjct: 684 AKTKERRELMIFVQPIIV 701 >gi|41019214|gb|AAR98526.1| HrcC [Pseudomonas syringae pv. phaseolicola] Length = 699 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 90/265 (33%), Gaps = 16/265 (6%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R +K++ L+++ + + + I ++ R+ L ++ + + Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELFNRWN 342 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 SS G + + G S + + F + LHALE + + P++ Sbjct: 343 FNASSVGGGVNLF---------DAGTSSTMFIQNAGKFXSELHALEGNGSASVIGNPSIL 393 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A S ++ G L P L ++ L + E Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + I PS R T + G++V+ G + IPLL IP +G Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511 Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419 LF++ + E TP L+ Sbjct: 512 KLLFQSRSRELGQRERLFILTPRLI 536 >gi|107101148|ref|ZP_01365066.1| hypothetical protein PaerPA_01002180 [Pseudomonas aeruginosa PACS2] gi|254234815|ref|ZP_04928138.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa C3719] gi|296389899|ref|ZP_06879374.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa PAb1] gi|1781385|gb|AAC44774.1| PscC [Pseudomonas aeruginosa] gi|126166746|gb|EAZ52257.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa C3719] Length = 600 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%) Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250 ++V +I ++ + L Q+G S G G G S+ Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + L+ + + PTL A + + + Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG +L TP V++ G I L + E S+ +P+ DT + G Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++++ G+ +D++ Q + +P L IP LGALFR + + P L+ Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 505 >gi|312597809|gb|ADQ89924.1| RscC [Pseudomonas fluorescens] Length = 716 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 18/303 (5%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R ++ +++ + V + I ++ R L ++ + Sbjct: 300 RVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKL-VEIDAIILDIDRTQLAELASNWN 358 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + GG + G S + D F L ALE +A P++ Sbjct: 359 VESGDL---------IGGASMIRPGASSTVFIQDYGDFSAQLRALEGRGLASVVANPSVL 409 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A + +V G L P + G +I + ++ E Sbjct: 410 TLENQPAVIDFSRTEYISAI--GERVATVEPITAGTSLQVVPHAIETGGRNQIQMSLEIE 467 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 PS R T + ++V+ G ++ E +P L +IP++G Sbjct: 468 DGRIEPSEVGQQTPSVRRGVVSTQAVMGESRSLVVGGFHTEETGDNLERVPWLGRIPLIG 527 Query: 396 A-LFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LF ++ E TP L+ V D V+ R N Sbjct: 528 PLLFSSTTRETSRRERVFILTPRLIGDQVDPARYISALDREQVDSAMAR-LEERRNGTRP 586 Query: 454 PKE 456 Sbjct: 587 VGR 589 >gi|15596913|ref|NP_250407.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa PAO1] gi|9947691|gb|AAG05105.1|AE004598_4 Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa PAO1] Length = 600 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%) Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250 ++V +I ++ + L Q+G S G G G S+ Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + L+ + + PTL A + + + Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG +L TP V++ G I L + E S+ +P+ DT + G Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++++ G+ +D++ Q + +P L IP LGALFR + + P L+ Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 505 >gi|330819413|ref|YP_004348275.1| Type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia gladioli BSR3] gi|327371408|gb|AEA62763.1| Type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia gladioli BSR3] Length = 596 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 89/276 (32%), Gaps = 31/276 (11%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA- 231 +++ L++ V ++ I E+ D L+QIG S A Sbjct: 323 DTPDRVGQYGELIRQLDVR-PQIVEIQAHIIEIDDDTLQQIGVDWRAHNSHVDFQTGNAQ 381 Query: 232 -----------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 + G S + AL+ Sbjct: 382 QAQNSFDGGQLNPLFGTVQQAGPGNTIVNATPGGAALSAVVGGAGRYLMARVSALQSTNK 441 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-- 326 + A P + + A+ + + K ++ + + GV L P ++ Sbjct: 442 TKIDASPLVATLDNVEATMDNTTRFFVKVAGYTSAD--LYSVSTGVSLRVLPLIVRDQDK 499 Query: 327 -RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 RI L + E + D+P + +T + G ++++AG D G+ Sbjct: 500 TRIKLNVHIEDGQLT-QQKVDDIPVITTSQINTQAFVGLGESLLIAGFTTDTQTNGVTGV 558 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 P LS+IP+LGALFR + E TP ++ Sbjct: 559 PFLSRIPLLGALFRYHSDDHSHGERVFLLTPRIIDA 594 >gi|269302606|gb|ACZ32706.1| putative general secretion pathway protein D [Chlamydophila pneumoniae LPCoLN] Length = 754 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 9/258 (3%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSEGGDFSVKG 249 + V ++V + E + ++ G G G S S + G + S Sbjct: 460 KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGS 519 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + ++ L +R A P++ ++ A + VSS Sbjct: 520 SI-VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEM-SIAVSSDKDKAQYNR 577 Query: 310 HDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG+++ P + G+ + ++T+++ G N D P R V + G Sbjct: 578 AQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGE 637 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425 T+++ GL + +GIP L IP +G LF S + TE+F+ TP +++ PV + Sbjct: 638 TVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQ 697 Query: 426 DLSRPDDHYSVEDDAKAF 443 + S + + + Sbjct: 698 ERKEEALLSSRPGEREEY 715 >gi|148979183|ref|ZP_01815362.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3] gi|145961941|gb|EDK27231.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3] Length = 564 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 119/312 (38%), Gaps = 31/312 (9%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + ++D + G V + D T + + + ++ L+I + QV Sbjct: 253 KATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVK-QV 311 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231 ++ I V ++G + ++ ++ + + Sbjct: 312 QIEARIVTVTEGNFDELGVRWGVSSTNGSFTVGGSIEGNHPSAITPYDDDGGSSVIDDYL 371 Query: 232 --ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + F V + + L AL++ + ++ P L + + A Sbjct: 372 NVNLAATSPNASSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQ 431 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y SS+GATSV + L TP + R+ L + P V+ G+ Sbjct: 432 GTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVVKTGTGE 490 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + ++ T V + +G T+VL G+ + + + +PLL +P+LGALFR S N + Sbjct: 491 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPLLGALFRRSYENVGK 550 Query: 408 TEIFIAATPFLV 419 +E+ I TP +V Sbjct: 551 SELLIFVTPKVV 562 >gi|15643874|ref|NP_228923.1| general secretion pathway protein D, putative [Thermotoga maritima MSB8] gi|4981663|gb|AAD36193.1|AE001770_5 general secretion pathway protein D, putative [Thermotoga maritima MSB8] Length = 387 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 58/339 (17%), Positives = 115/339 (33%), Gaps = 36/339 (10%) Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + + ++ + + V D L G + R + +++T+ Sbjct: 53 TVTGFITMELNEVPLEQALKMILMPGG--YVFKKMDGFYLVGSPDPANPAFRYLAVTKTY 110 Query: 168 LSQSGRNQYANSSSKKV----------MNLLNIAGED------------------QVTLK 199 + A V N++ I + QV + Sbjct: 111 KLKYITTADAQELLPAVYKSYVKFNEKNNMVTITAPEEIIQEFEEDLKKIDIPIPQVKIS 170 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 V + EV +D ++G SG + V+ D Sbjct: 171 VIVTEVSKDYSNELGLNSLDYSFGSGQEFNENWSATLGLVTGIIDVQTDVFG---QILAQ 227 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L LE + A+P + SG+ AS G+ + + + + + D GV + Sbjct: 228 LKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLQAEGAVSRIESIDVGVSIDIQ 286 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P V+ + L + +VS + + + TT+ L +G T+V++G +D Sbjct: 287 PRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLFLKNGQTVVISGATIEDSA 344 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 Q G+P+L+KIP++ LF + + E++I + Sbjct: 345 QTSSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383 >gi|116049666|ref|YP_791529.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa UCBPP-PA14] gi|115584887|gb|ABJ10902.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa UCBPP-PA14] Length = 600 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%) Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250 ++V +I ++ + L Q+G S G G G S+ Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + L+ + + PTL A + + + Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG +L TP V++ G I L + E S+ +P+ DT + G Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++++ G+ +D++ Q + +P L IP LGALFR + + P L+ Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 505 >gi|322646886|gb|EFY43389.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|323203179|gb|EFZ88208.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 456 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 61/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + + I +G K+ ++++ V D T + + + Sbjct: 51 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 98 Query: 94 VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G A I L+ + + + N+ + + + + L + Sbjct: 99 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 152 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + ++ + A + ++ L++A V L + I ++ + Sbjct: 153 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 211 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+++G S + G + + + LD F ++ALE Sbjct: 212 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 259 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L A F + K + ++ YG ++ P + G+I Sbjct: 260 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 317 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + E + +P T +P G ++++ G +D + Sbjct: 318 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 377 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426 IP L K+P++G+LFR S N+ P +V P+ Sbjct: 378 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 420 >gi|330812422|ref|YP_004356884.1| type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380530|gb|AEA71880.1| putative type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 716 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 18/303 (5%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R ++ +++ + V + I ++ R L ++ + Sbjct: 300 RVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKL-VEIDAIILDIDRTQLAELASNWN 358 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + GG + G S + D F L ALE +A P++ Sbjct: 359 VESGDL---------IGGASMIRPGASSTVFIQDYGDFSAQLRALEGRGLASVVANPSVL 409 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A + +V G L P + G +I + ++ E Sbjct: 410 TLENQPAVIDFSRTEYISAI--GERVATVEPITAGTSLQVVPHAIETGGRNQIQMSLEIE 467 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 PS R T + ++V+ G ++ E +P L +IP++G Sbjct: 468 DGRIEPSEVGQQTPSVRRGVVSTQAVMGESRSLVVGGFHTEETGDNLERVPWLGRIPLIG 527 Query: 396 A-LFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LF ++ E TP L+ V D V+ R N Sbjct: 528 PLLFSSTTRETSRRERVFILTPRLIGDQVDPARYISALDREQVDSAMAR-LEERRNGTRP 586 Query: 454 PKE 456 Sbjct: 587 VGR 589 >gi|325921916|ref|ZP_08183727.1| HrcC protein [Xanthomonas gardneri ATCC 19865] gi|325547618|gb|EGD18661.1| HrcC protein [Xanthomonas gardneri ATCC 19865] Length = 606 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 82/241 (34%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------------- 243 + TI E+R ++ +G + Sbjct: 369 QIDATIIEIRDGAMQDLGVDWRFHSRRVDVQTGDGRGGQLGYDGSLSGAAAAGATAPLGG 428 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE+ + ++ P + + A Q + S Sbjct: 429 TLTAVLGDAGRYLMTRVSALEQTDKAKIVSTPQVATLDNVEAVMDHKQQAFVRV--SGYA 486 Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 A + GV L P+V+ G++ L ++ E + +P + T Sbjct: 487 AADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GANTVDGIPVITSSEITTQA 545 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG +D Q +P LSKIP++G LF++ + + + TP +V Sbjct: 546 FVNEGQSLLIAGYAQDTDQTDLNKVPGLSKIPLVGNLFKHRQKSGSRLQRLFLLTPHIVS 605 Query: 421 P 421 P Sbjct: 606 P 606 >gi|307297353|ref|ZP_07577159.1| type II and III secretion system protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916613|gb|EFN46995.1| type II and III secretion system protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 3898 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 55/327 (16%), Positives = 122/327 (37%), Gaps = 32/327 (9%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 G++ +++++ E+T + + V+ +V+ G+ ++ + Sbjct: 3595 KAGEEPTDVELVYRVYHNVEELTRLIEFYGGEVLSDPVNGYIVVRGLAKS--RVDNIFDE 3652 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR--RDILKQIGFQHSITG 221 + LSQ + QV ++ + + +I ++I I Sbjct: 3653 IGSALSQP---------------------KKQVRIETRLVDESLIDEIQREIKTSIGINA 3691 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G + +++ + + +R ++ P++ ++S Sbjct: 3692 PEILIENGSVDLDFGIIDYLDITQLIDDLVNTGTVKIEADLSDRDNDSDLISSPSIVSMS 3751 Query: 282 GQSASFTSGGQHLY------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 G+ A G Y + ++ + GV L TPTV G+I L + + Sbjct: 3752 GEEAKIHIGDTIPYLVRTIEYVEGNPVEIETIEYLNTGVELRITPTVNDDGKILLDLFIK 3811 Query: 336 VSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VSEP V+ + + R+A++ + + G T+ + GL+ + +P LS +P + Sbjct: 3812 VSEPEKYVDGTRTLYGEKTREANSRLIISDGNTLTIGGLVANKDTVTVNKMPFLSDLPFI 3871 Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421 G LF ++ E+ I T +V+P Sbjct: 3872 GKLFTTENKTSDKRELVIFITAEVVEP 3898 >gi|255348953|ref|ZP_05380960.1| general secretion pathway protein D [Chlamydia trachomatis 70] gi|255503492|ref|ZP_05381882.1| general secretion pathway protein D [Chlamydia trachomatis 70s] Length = 760 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174 +++A L + ++ DT V+ + + + + + + Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432 Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217 + + K L+ + + V ++V + E + ++ G Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273 G + A + + GG S++ L +R A Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330 P++ ++ A + VSS YG+++ P + G+ + Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPIINIGEEDGKSFI 606 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++T+++ G N D P R V + G T+++ GL + ++GIP L + Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 +P +G LF + +TE+F+ TP ++ P + + + F V Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726 Query: 450 KIYGPKEASEVEGQNYKG 467 K+A E + G Sbjct: 727 GQQAAKQAIERKESTVWG 744 >gi|312602771|ref|YP_004022616.1| type III secretion outer membrane pore SctC [Burkholderia rhizoxinica HKI 454] gi|306431574|emb|CBK52126.1| type III secretion outer membrane pore SctC [Burkholderia rhizoxinica HKI 454] gi|312170085|emb|CBW77097.1| type III secretion outer membrane pore SctC [Burkholderia rhizoxinica HKI 454] Length = 645 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 96/261 (36%), Gaps = 26/261 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------------------SS 223 + +++ L++ V ++ I EV D LKQIG + Sbjct: 386 QSLIDALDVK-PRLVEIEAHIIEVDDDALKQIGVDWRAHNSHVDLQTGNGLHSPSSYDGT 444 Query: 224 SGPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 P+ + + G +S G + + AL+ A R A P + + Sbjct: 445 LNPTFTSNSSDGTTVISTAPLGASLTAVLGNAGRYLLARVDALQSANLARIDASPKVATL 504 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEP 339 S A + + ++ + + GV L P V GR ++++ + + Sbjct: 505 SNAEAVMDHKTRFFVRVAGYTSAD--LYSVSTGVSLRVRPLVVEEDGRTRIKLEVHIEDG 562 Query: 340 VIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + +P +T + ++++AG D L+ GIPLLSKIP++G LF Sbjct: 563 QVTNQLVDHIPVITTSTINTEAFVGQNESLLIAGYRTDSSSNLETGIPLLSKIPLIGGLF 622 Query: 399 RNSRFNREETEIFIAATPFLV 419 R R E +P ++ Sbjct: 623 RYRSDQRSHMERIFLLSPRII 643 >gi|166154787|ref|YP_001654905.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu] gi|166155662|ref|YP_001653917.1| general secretion pathway protein D [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336062|ref|ZP_07224306.1| general secretion pathway protein D [Chlamydia trachomatis L2tet1] gi|165930775|emb|CAP04272.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu] gi|165931650|emb|CAP07226.1| general secretion pathway protein D [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 760 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 102/283 (36%), Gaps = 14/283 (4%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + V ++V + E + ++ G G + A + + GG Sbjct: 468 KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSW-----ASGGILEFLFKGG 522 Query: 253 R----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 S++ L +R A P++ ++ A + VSS Sbjct: 523 AKGIVPSYDFAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYN 581 Query: 309 THDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 YG+++ P + G+ + ++T+++ G N D P R V + G Sbjct: 582 RAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTRRNITNKVRIQDG 641 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAM 424 T+++ GL + ++GIP L ++P +G LF + +TE+F+ TP ++ P Sbjct: 642 ETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMFITPKILDNPSET 701 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 + + + F V K+A E + G Sbjct: 702 EEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWG 744 >gi|126456443|ref|YP_001075927.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1106a] gi|134282510|ref|ZP_01769214.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] gi|167742975|ref|ZP_02415749.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 14] gi|167849982|ref|ZP_02475490.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei B7210] gi|167898588|ref|ZP_02485989.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 7894] gi|167915290|ref|ZP_02502381.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 112] gi|167923124|ref|ZP_02510215.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei BCC215] gi|242313713|ref|ZP_04812730.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] gi|254186704|ref|ZP_04893220.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|254194157|ref|ZP_04900589.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei S13] gi|254301616|ref|ZP_04969060.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|126230211|gb|ABN93624.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106a] gi|134246067|gb|EBA46157.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] gi|157811506|gb|EDO88676.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|157934388|gb|EDO90058.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|169650908|gb|EDS83601.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei S13] gi|242136952|gb|EES23355.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] Length = 588 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223 ++ L+I + ++ I E+ D+L++IG S Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385 Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + A + G + + AL+ + ++ A P + + Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339 A + + K ++ + + GV L P ++ G +++ V++ Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503 Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|14719865|gb|AAK73229.1| SctC [Burkholderia pseudomallei] Length = 588 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223 ++ L+I + ++ I E+ D+L++IG S Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385 Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + A + G + + AL+ + ++ A P + + Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339 A + + K ++ + + GV L P ++ G +++ V++ Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503 Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|167724007|ref|ZP_02407243.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei DM98] gi|254183789|ref|ZP_04890381.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] gi|184214322|gb|EDU11365.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] Length = 588 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223 ++ L+I + ++ I E+ D+L++IG S Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385 Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + A + G + + AL+ + ++ A P + + Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339 A + + K ++ + + GV L P ++ G +++ V++ Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503 Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|289525617|emb|CBJ15095.1| general secretion pathway protein D [Chlamydia trachomatis Sweden2] Length = 760 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 102/283 (36%), Gaps = 14/283 (4%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + V ++V + E + ++ G G + A + + GG Sbjct: 468 KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSW-----ASGGILEFLFKGG 522 Query: 253 R----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 S++ L +R A P++ ++ A + VSS Sbjct: 523 AKGIVPSYDFAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYN 581 Query: 309 THDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 YG+++ P + G+ + ++T+++ G N D P R V + G Sbjct: 582 RAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTRRNITNKVRIQDG 641 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAM 424 T+++ GL + ++GIP L ++P +G LF + +TE+F+ TP ++ P Sbjct: 642 ETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMFITPKILDNPSET 701 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 + + + F V K+A E + G Sbjct: 702 EEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWG 744 >gi|254264333|ref|ZP_04955198.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] gi|254215335|gb|EET04720.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] Length = 588 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223 ++ L+I + ++ I E+ D+L++IG S Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385 Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + A + G + + AL+ + ++ A P + + Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATL 445 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339 A + + K ++ + + GV L P ++ G +++ V++ Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503 Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|319795612|ref|YP_004157252.1| type III secretion outer membrane pore, yscc/hrcc family [Variovorax paradoxus EPS] gi|315598075|gb|ADU39141.1| type III secretion outer membrane pore, YscC/HrcC family [Variovorax paradoxus EPS] Length = 613 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 59/381 (15%), Positives = 121/381 (31%), Gaps = 35/381 (9%) Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P A+V+ R++Y G++ G + G+ + + L Sbjct: 226 PGVANVL----RSLY--GRHNGATGSAV-SGGGRVNGSSLSIGPNRQIKLRSGESINAPK 278 Query: 134 SNIR-VEMVSDT-VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + V + D L G+ + + + + ++++ +++ Sbjct: 279 MELSGVGSMGDGGATLGGVSGIGGELPQFQADTRMNAVLVRDTPARMAQYERLIASMDVR 338 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---------------------GPSKSF 230 + ++VTI ++ D L +G + G G Sbjct: 339 -PRLIEIEVTIMDISSDTLSSLGVDWRLHGRHYDFQTGRGDRGPLTWDGSGNEAGQIGGV 397 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 ++ + G R + AL +A P + + A + Sbjct: 398 NSNGNPVTPLGAMFTAAIGNSARNYLLARVTALASNGEANFVARPKVMTLDNTEAVLENM 457 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--GRIGLRIQTEVSEPVIGVNAGDM 348 + + + + G + TP ++ GR + V V + Sbjct: 458 SEFYVRVDGFQDAG--LFSVTAGTAVRVTPLIIDEKTGRGVMMSIDIVDGDVSTQAVDRI 515 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R R +T + G ++++AG ++ G+PLL +P +G LF+ S + Sbjct: 516 PIVRRRSVNTQALVDEGASLLIAGYSSEERANAVTGVPLLKDLPGVGNLFKYSDKKQVNM 575 Query: 409 EIFIAATPFLVKPVAMRDLSR 429 E F TP LV P + L Sbjct: 576 ERFYLLTPRLVSPGSSTALPT 596 >gi|310779606|ref|YP_003967939.1| type II and III secretion system protein [Ilyobacter polytropus DSM 2926] gi|309748929|gb|ADO83591.1| type II and III secretion system protein [Ilyobacter polytropus DSM 2926] Length = 594 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 58/351 (16%), Positives = 128/351 (36%), Gaps = 52/351 (14%) Query: 103 GHDGKQMLNLDILIERDIAH-LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G +++ + + + ++ + + + + + ++L G I + Sbjct: 225 DDSGSELMTTRVTLRHALPDDVKTVVESAMREVEVSSFPKLNMIILKGTSSNILPA---- 280 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 KK++ L++ + QV + + +V+ ++ + +GF + Sbjct: 281 --------------------KKLIEDLDLPQK-QVRITAQVLDVKDNLFETLGFDWAYDS 319 Query: 222 SS-----SGPSKSFAADFG----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 + G S +F G S +F+ ++ L+ + Sbjct: 320 NGTSTYTDGTSGTFLGTSTDVGIGTGYSSAIEFAQSFNGGDDVLGVSINMLQSDQDMIIS 379 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----THDYGVVLHFTPTV----LS 324 A P++ ++G+ A F++ + + + T + G+V + P + Sbjct: 380 AVPSVVVLNGEEAEFSTTEEVIVGYEEEEDDDGNTTTTPMFEEAGLVFNVKPIIRTGADG 439 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLK 375 I L + TEVS + + D + R DTTV + SG ++ + G+ + Sbjct: 440 GDTILLTLSTEVSNFNLVSTSADSDATTYNEDGGSKASRNIDTTVSVKSGESLFIGGMKR 499 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 D+ + IPLL +P +G LFRN E +I+I ++ D Sbjct: 500 ADVSNVTSKIPLLGDLPFVGFLFRNEAVESELRDIYIKIRAEIITDENRED 550 >gi|237507548|ref|ZP_04520263.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] gi|234999753|gb|EEP49177.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] Length = 588 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223 ++ L+I + ++ I E+ D+L++IG S Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385 Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + A + G + + AL+ + ++ A P + + Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339 A + + K ++ + + GV L P ++ G +++ V++ Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503 Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|255507170|ref|ZP_05382809.1| general secretion pathway protein D [Chlamydia trachomatis D(s)2923] gi|296435178|gb|ADH17356.1| general secretion pathway protein D [Chlamydia trachomatis E/150] gi|296438898|gb|ADH21051.1| general secretion pathway protein D [Chlamydia trachomatis E/11023] Length = 760 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 102/283 (36%), Gaps = 14/283 (4%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + V ++V + E + ++ G G + A + + GG Sbjct: 468 KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSW-----ASGGILEFLFKGG 522 Query: 253 R----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 S++ L +R A P++ ++ A + VSS Sbjct: 523 AKGIVPSYDFAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYN 581 Query: 309 THDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 YG+++ P + G+ + ++T+++ G N D P R V + G Sbjct: 582 RAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTRRNITNKVRIQDG 641 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAM 424 T+++ GL + ++GIP L ++P +G LF + +TE+F+ TP ++ P Sbjct: 642 ETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMFITPKILDNPSET 701 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 + + + F V K+A E + G Sbjct: 702 EEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWG 744 >gi|330444063|ref|YP_004377049.1| type III secretion protein SctC [Chlamydophila pecorum E58] gi|328807173|gb|AEB41346.1| type III secretion protein SctC [Chlamydophila pecorum E58] Length = 908 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 60/344 (17%), Positives = 118/344 (34%), Gaps = 52/344 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ +V++LLN QV ++V I + + G Q G+ Sbjct: 554 VNNSIVVVGNQANVDRVVSLLNGLDLPPKQVYIEVLILDTSLEKSWDFGVQWVALGNEQS 613 Query: 226 PSKSFAADFGGKFVSEG---------------------------------GDFSVKGVLD 252 + +S F + + + Sbjct: 614 KVAYASGLLSNSVISNTAKATVPPGVPTPGSLSLPTPAQMTGFSDMMSSSSAFGLGIIGN 673 Query: 253 --------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 + +L AL++ + P + A Q ASF G Y+T Sbjct: 674 VISHKGKSFLTLGGLLSALDQDGDTIIVLNPRIMAQDTQQASFFVGQNIPYQTTSTIIQE 733 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + ++ D GV L T TV + L+I+ +SE P A T Sbjct: 734 TGSVTQNIEYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 792 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 793 MQVPDGCFLVMSGHIRDKTTKIVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 852 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 + Y +A+A + P + + Sbjct: 853 SSFEEGSDLTNKEGYRYNWEAEA---GSMQVAPRPAPECQRPPR 893 >gi|22299887|ref|NP_683134.1| putative general secretion pathway protein D [Thermosynechococcus elongatus BP-1] gi|22296072|dbj|BAC09896.1| tlr2344 [Thermosynechococcus elongatus BP-1] Length = 719 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 67/374 (17%), Positives = 117/374 (31%), Gaps = 40/374 (10%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIAD--SNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 +G L L+E A+L T + ++V + VV T+ V Sbjct: 334 REGDLQLGAVQLLEMYGANLPDTGQAQAPAGCEQLQVPPAAGGVVSQICRSTLLKGLEVV 393 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK--------QI 213 T + +++ +I + QV + V +V + Sbjct: 394 GDPRTNTITLIGTPRKVEIATQLIQQFDIR-KRQVMVNVKFIDVNLSRTRTANADLITNF 452 Query: 214 GFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---SFETVLHALERATAI 269 G SS G S ++ G +F + Sbjct: 453 GSGLWGAIFSSEGLSVIRGTTPNVGSLTPQPLPPFPGTPVGSLLSNFFAQIQLAIDTGNA 512 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS------------STGATSVTTHDYGVVLH 317 L PTL G +A + S+ ++ + GV+ + Sbjct: 513 TILTNPTLVIQEGSAAQVNLTQEIFSGIQSTVSSQATGSGAAITSQQITPIIRPAGVIFN 572 Query: 318 FT-PTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRV-----RKADTTVELPSGGT 367 T + G I L++ EVS P + D PS R + L G T Sbjct: 573 VTVDQIDDNGFITLQLSPEVSAPTDTYDVVFPGVDNPSIGTLLAQRRMESGRIRLRDGQT 632 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD- 426 ++LAG+++D + +P+L IP+LG LFR +R+ E+ + TP ++ Sbjct: 633 LMLAGIIQDQDRSTVTKVPILGDIPLLGRLFRRESNSRQRNELVVMVTPKIIDDTQNAGF 692 Query: 427 --LSRPDDHYSVED 438 P + Sbjct: 693 GYQYSPTPGSMPPN 706 >gi|222055737|ref|YP_002538099.1| type II and III secretion system protein [Geobacter sp. FRC-32] gi|221565026|gb|ACM20998.1| type II and III secretion system protein [Geobacter sp. FRC-32] Length = 805 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 69/394 (17%), Positives = 145/394 (36%), Gaps = 46/394 (11%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + T+ ++ K+ + + ++ L + D +R + I V Sbjct: 244 KVLNENTIIVYTKSPEKTK-----QYEELIVQTFYLNKLDAKKAVNLIRTMLQVKKIYVN 298 Query: 140 MVSDTVVLHGMVRTIQDSQRAVEL-------SETFLSQSGRNQYANSSSKKVMNLLNIAG 192 + +V+ I+ +Q+ ++ + + S ++ ++ Sbjct: 299 EEMNALVIRDTPEVIEVAQKILDANDVPDAEVVLEVEVLEFTKSNAESFGLALSRYAVST 358 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + L + Q + T S++ + + + + F G + + Sbjct: 359 AA-----AKVG--ASTFLSDVLVQPTSTSSTTTSTTTSSDNLLSLFRWRGFNGFLTVPNA 411 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVT 308 F+F L TLA P + + + A F G + T S++ +V Sbjct: 412 TFNFGKTLS------NSETLANPKIRVKNREKAKFNVGTRVPITTTSTNGTSIGVNVNVQ 465 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVEL 362 D GV ++ PT+ + +++ EVS + + + + R DT + L Sbjct: 466 YVDVGVKVNAEPTIQLNNEVSIKLSLEVSTILSKDKIGDASSLTTVVTIGTRNLDTVLSL 525 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G T ++ GL++DD + K+ + +L IPI+G L N+ ++E+ +A TP +V+ V Sbjct: 526 KDGETSIIGGLIQDDKSKSKQKVMVLGDIPIIGPLLSNNDNTNRKSELVLAITPRVVRSV 585 Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 E DA F+ R ++ K Sbjct: 586 -----------TVPEGDAAGFWSGREDEPSLSKP 608 >gi|196233070|ref|ZP_03131918.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] gi|196222877|gb|EDY17399.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] Length = 874 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 14/218 (6%) Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S + + D GG V S ++ AL R + Sbjct: 578 VDVSSGHGILNFNNLLSQDTIRSVAGVGGSGVTGFVTAGNSLTAIVTALMNTNRFRVVTR 637 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSST------------GATSVTTHDYGVVLHFTPTV 322 P++ + + A SG + T S +SV + L P + Sbjct: 638 PSVFTRNNKKAIIASGQEIPVPTSIQSALNAGTTVNTGLVTQSSVQFKRVALQLEVVPLI 697 Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + L + ++ + + D+P+ R T+V +P+ GT+VL GL++ + + Sbjct: 698 NADREVSLDVLQKIDQVSGSTRIDNNDIPNIATRYVKTSVTVPNEGTVVLGGLIQQSMNK 757 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 ++ GIPLLS IP LG LF ++ + TE+ I P + Sbjct: 758 VRSGIPLLSSIPGLGYLFSSTTKEKIRTELVILIRPEV 795 >gi|284007407|emb|CBA72822.1| type III secretion outer membrane pore, YscC,HrcC,InvG [Arsenophonus nasoniae] Length = 539 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 18/245 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 K++ L+I + L V I ++ + L Q+G + S G+ G + + G Sbjct: 285 KIVEQLDITKRH-IELSVWIIDIEKKALDQLGIKWSG-GAKIGQKLGVSLNAGTS----- 337 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 +D SF T + AL R ++ P + A F + K + Sbjct: 338 -------TIDGASFMTAIFALTRNDKANIVSRPMVLTQENIPAIFDNNRTFYTKLI--GE 388 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 AT + YG + P +I + I E + +P T + Sbjct: 389 RATDLKNVTYGTAISVLPRFTINNQIEMMITVEDGSRAGQIT-DHLPEIGRTNISTIARV 447 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKP 421 P ++++ G +D+ + ++E IPLL IP LG+LFR + ++ P ++ P Sbjct: 448 PQNKSLLIGGYTRDEHRNIEEKIPLLGDIPYLGSLFRYNIEKKDSLVRVFLIQPREIINP 507 Query: 422 VAMRD 426 ++ Sbjct: 508 LSTSA 512 >gi|182440996|dbj|BAG24121.1| HrcC [Pseudomonas cichorii] Length = 672 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 82/273 (30%), Gaps = 17/273 (6%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + I ++ R L + + S S S G + + D Sbjct: 301 VEIDAIILDIDRTQLSALESRWSARAGSVNFGSSLL----------TGGSATLSISDFDR 350 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + ALE +A P++ + Q A +V + G Sbjct: 351 FFADIQALEGQGGASVIARPSVLTLENQPAVIDFSRTAYITAT--GERVANVQSVTAGTS 408 Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P ++ R L I E + + P + T + ++V+ G Sbjct: 409 LQVIPRTIAGAQANRFQLIIDIEDGQLDRSRDGET-PDVKRGTVSTQAVISENRSLVIGG 467 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 D+ Q + +PLL +P+LG LF + R E TP L+ + Sbjct: 468 FHVDETGQHHDKVPLLGDLPVLGPLFTSKRQEVSRRERLFILTPRLIGDQIDPARYIASE 527 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 + + D N K A + Sbjct: 528 N-RPQLDKALALSGSPNSRERKKIAISKAFADL 559 >gi|260770882|ref|ZP_05879811.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972] gi|260614119|gb|EEX39309.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972] Length = 574 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 66/369 (17%), Positives = 128/369 (34%), Gaps = 44/369 (11%) Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141 + + K + +Q L + E ++ A ++ +M+ Sbjct: 217 VDGNVILVAPKEE-------LDRREQQQLEKARMAEELGDLQSEIIKINFAKASDIAQMI 269 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 G V + + T + ++ L+I + QV ++ Sbjct: 270 GG----DGAVNMLSERGSISIDERTNALLLRELPDNIHVIRDIVASLDIPVK-QVQIEAR 324 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------------------A 232 I V L ++G + + ++ + + Sbjct: 325 IVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGLYDGSSDSGDGAAIDDFLNVN 384 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + F V + + L A++R + ++ P L + Q A G + Sbjct: 385 LAATSANASSIAFQVAKLGADTLLDLELSAMQRESKAEIISSPRLITTNKQPAYIEQGTE 444 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350 Y SS+GATSV + L TP + R+ L + P V+ G+ + Sbjct: 445 IPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEVVKTGTGEAVA 503 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ T V + +G T+VL G+ + + + +PLL +P+LGALFR S ++E+ Sbjct: 504 INTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGDLPLLGALFRRSYEQMGKSEL 563 Query: 411 FIAATPFLV 419 I TP +V Sbjct: 564 LIFVTPKVV 572 >gi|182412463|ref|YP_001817529.1| type II and III secretion system protein [Opitutus terrae PB90-1] gi|177839677|gb|ACB73929.1| type II and III secretion system protein [Opitutus terrae PB90-1] Length = 596 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 14/227 (6%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF--SVKGVLDRFSFETVLHA 262 V IG + T +S + + ++ ++ V F V+ A Sbjct: 312 VTATSGTTIGSSLTNTTNSGNSTTANETLNLLNSLTGTTTNERALNAVFTADQFGLVISA 371 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLH 317 L T + ++ PT+ ++ A G ++ + + S G++L Sbjct: 372 LNELTTAKVVSNPTVVTLNNTEAFINIGKEYPIPNYTYNEQRGSFEVAGFTYKPIGIILK 431 Query: 318 FTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 TP V + G I L I+ EVS G +P + +KA T + L G T+ + Sbjct: 432 VTPQVNARGFIKLMIEPEVSSFNDADSVNFGGATGARIPVIQTKKARTQISLKDGFTMGI 491 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 GL+ + +P+L IP+LG LF + + + I T Sbjct: 492 GGLIDSQVSNGSTKVPVLGSIPVLGRLFSSKTQSTATRNLLIFLTAK 538 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 75/244 (30%), Gaps = 24/244 (9%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII------LQVPVDVQDVLVSDP 74 PS ++A + S S + + P + ++ + Sbjct: 33 PSEPAAAVTSPTDSASGDPSVAIKDADATGSATKGRSATGQDTLSVDFPDEDIRNILRN- 91 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 AD+ + + + G+A++ L +Q+ + + E + ++++ Sbjct: 92 -VADLFELN---LVIPETLQGKASIKLRDVTWRQIFQVILTPVGYTYIEEGNIITIVSNA 147 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------------K 182 +++ E V+ V + R L +T ++S + Sbjct: 148 SMQQEPVTTEVFIVNYARAADIMPTINSLIDTAAGGKIVVDARSNSLVITERPSRMNRIR 207 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++ L+ DQV ++ EV ++ IG S S + GG S Sbjct: 208 PIIEQLD-RATDQVMIESKFVEVTDGDIRNIGVNWSSLKSYKVGVGPDPENEGGVVGSFN 266 Query: 243 GDFS 246 Sbjct: 267 RTAG 270 >gi|217425412|ref|ZP_03456906.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] gi|217391663|gb|EEC31691.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] Length = 588 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223 ++ L+I + ++ I E+ D+L++IG S Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385 Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + A + G + + AL+ + ++ A P + + Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339 A + + K ++ + + GV L P ++ G +++ V++ Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503 Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|254254350|ref|ZP_04947667.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] gi|124898995|gb|EAY70838.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] Length = 702 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 75/489 (15%), Positives = 150/489 (30%), Gaps = 69/489 (14%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 ++ + + + + ++V V P A ++ LFGK G Sbjct: 186 PAANGQHADIRAFRLKYGWASDFTINRSGKEVTV--PGVATILRR------LFGKGGGTT 237 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-TIQD 156 + G+ + + IA + DT G + Sbjct: 238 AMPSSTPLGQAARQVKLGSGLTIAVPRLDFPDISGGPR-SGGYSGDTAAGGGFSPFSNAG 296 Query: 157 SQRAVELSETFLSQSGRNQYANSSS---KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 ++ + + + + ++N L+ V + VTI ++ D L + Sbjct: 297 GDTLPQIVADPAINAVIVRDLPENMYRYQSLINQLDER-PRIVEINVTIIDINEDSLDSL 355 Query: 214 GFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--------- 254 G + G + + G ++ G S G F Sbjct: 356 GIDWRLHTTHGDVQIGNGQNPLSGNTQYNGSGNPPLTFGIGTSETGQTGAFMPTGIALTA 415 Query: 255 --------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 T ++AL + + ++P + A+ A + Q + +S Sbjct: 416 SIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLTQFYVQVQGYQD--SS 473 Query: 307 VTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 + + G + TP ++ + + I + V G ++P + R Sbjct: 474 LYSVTTGTSIKVTPMIVDDAARNAAAAAGGPQSVMMSIDIQDGNIVPGQAVSNVPVIQQR 533 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T + G ++++AG D+++ K G+P LS IP++G LF+ + + E F Sbjct: 534 NIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLL 593 Query: 415 TPFLVK----------PVAMRDLSRPDDH----YSVEDDAKAFFFNRVNKIYGPKEASEV 460 TP +V PV + D + Y D+ A A+ Sbjct: 594 TPRVVTNASMYAPDGSPVNPGADAPADPNALSMYRPPDNDIAVPLTPKPLPGTKFRAARA 653 Query: 461 EGQNYKGAI 469 G G Sbjct: 654 AGTGRCGRA 662 >gi|257453318|ref|ZP_05618617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R] gi|317059850|ref|ZP_07924335.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R] gi|313685526|gb|EFS22361.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R] Length = 435 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 67/435 (15%), Positives = 139/435 (31%), Gaps = 62/435 (14%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV------IIL 60 F ++ +F +LP E + + E+ I I +++ + Sbjct: 30 ILFALICLFTLEEVCYAKELPKDIEMSDTTLREVLDELEGCLGIKITVDESPKDPLNLFF 89 Query: 61 QVPVDVQDVLVSDPTKAD--VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 Q +++VL + V S L + +++ L Sbjct: 90 QEGQSIEEVLDMLGEITNKKVKKISNHEFLLEEVQI----------QKEEISKEYHLHYL 139 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 + L+ D I + + + ++E + Sbjct: 140 RSKEIYDALKDLFPDIKI---------------ANLDSRNQVIVVAE---------EKKI 175 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 K+M ++I G+ QV + I ++ +D+ ++GF S +K A G + Sbjct: 176 HEIDKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEES 234 Query: 239 VSEGG-------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 V G + + + L LE ++ + P++ G F Sbjct: 235 VGNSGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITE 294 Query: 292 QHLYKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-- 345 + + S + + G++L P + + L I E+S+ Sbjct: 295 EVIVGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNHK 354 Query: 346 ------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 S R T + + + I++ GL + + + +P LS IP LG LF+ Sbjct: 355 KDWNFNSQGGSKIGRSLSTRIHVKNKEMILIGGLSRFTRRNTENKVPFLSDIPGLGYLFK 414 Query: 400 NSRFNREETEIFIAA 414 + ET+++I Sbjct: 415 SESKKDAETDMYIKI 429 >gi|238897391|ref|YP_002923068.1| type III outer membrane secretin precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465146|gb|ACQ66920.1| type III outer membrane secretin precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 496 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 99/308 (32%), Gaps = 34/308 (11%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKVMNLLNIA---- 191 + V L G+V ++D ++ + S+ N L + Sbjct: 193 QYRDQKVTLPGLVSVLRDMNSQNTIAIGENKTSGKDQSLGLPLFSADPRQNALIVRDRVV 252 Query: 192 --------------GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 ++ + V I +V + Q+G + S G SF F Sbjct: 253 NMPIYASLVKQLDVRPIEIEISVAIIDVDASDINQLGINWEASASLGGGKVSFNKGFISS 312 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + F ++ALE+ + R L+ P++ ++ A K Sbjct: 313 DDGG------FSTVVGNDFMVRINALEQHSKARVLSRPSIVTLNNIQAVLDKNVTFYTKL 366 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYR 352 + + G ++ TP ++ + L IQ P I +P Sbjct: 367 --QGDKVAKLDSRTTGTLMQVTPRMIKDKGKEDVLLNLDIQDGQQRPSINNTTEILPQID 424 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + T L G ++L G ++D + K IPLL IP++G LFR+S Sbjct: 425 NSQITTQAVLKPGQNLLLGGFIQDSQKASKHKIPLLGDIPLIGGLFRSSSKQSSSVVRLF 484 Query: 413 AATPFLVK 420 VK Sbjct: 485 LIKAVPVK 492 >gi|117924235|ref|YP_864852.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1] gi|117607991|gb|ABK43446.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1] Length = 574 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 100/272 (36%), Gaps = 39/272 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADFGGKF 238 K+++ QV ++ + E+ + + G S G S ++ G Sbjct: 299 KLVDQFKEVIGRQVLIETRVMEITLNETYRTGVDWWAFKGSIAAMMGQSGTYTGRIGSTN 358 Query: 239 VSEGGDFSVK---------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 F + V+ + ++ L++ ++ L+ PT+ A GQ Sbjct: 359 ALSSNTFGLADISYPTTTTAATGLGLVISGANGAAIVDLLKQFGDVQVLSNPTIRARHGQ 418 Query: 284 SASFTSGGQHLYKTVSS-----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + G + Y + S + V T G+++ TP + GR+ + + Sbjct: 419 PSMISVGTSNTYVSESEITTTGTGTTATTQADVVVNTVFDGLMIGVTPFIKEDGRVVMTV 478 Query: 333 QTEVSEPV---------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 S+ G N +P +++ T +E SG + L GL+ + K Sbjct: 479 HPIKSDVTASSLDLVSVGGTNQVALPEVELKEMSTILETHSGDLVFLGGLIDKEKSATKT 538 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 G+PLL IP+LG LF + + E+ I Sbjct: 539 GMPLLGDIPLLGRLFSTDSSSDKTREMIIMLR 570 >gi|237804923|ref|YP_002889077.1| general secretion pathway protein D [Chlamydia trachomatis B/TZ1A828/OT] gi|231273223|emb|CAX10136.1| general secretion pathway protein D [Chlamydia trachomatis B/TZ1A828/OT] Length = 760 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174 +++A L + ++ DT V+ + + + + + + Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432 Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217 + + K L+ + + V ++V + E + ++ G Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273 G + A + + GG S++ L +R A Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330 P++ ++ A + VSS YG+++ P + G+ + Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++T+++ G N D P R V + G T+++ GL + ++GIP L + Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 +P +G LF + +TE+F+ TP ++ P + + + F V Sbjct: 667 LPGIGKLFGMGSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726 Query: 450 KIYGPKEASEVEGQNYKG 467 K+A E + G Sbjct: 727 GQQAAKQAIERKESTVWG 744 >gi|222100424|ref|YP_002534992.1| General secretion pathway protein D [Thermotoga neapolitana DSM 4359] gi|221572814|gb|ACM23626.1| General secretion pathway protein D [Thermotoga neapolitana DSM 4359] Length = 387 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 95/237 (40%), Gaps = 7/237 (2%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + ++I QV + V + EV +D ++G SG + V+ Sbjct: 154 EEDLKKIDIPIP-QVKISVIVTEVSKDYSNELGLNSLDYSFGSGQEFNENWSATLGLVTG 212 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + L LE + A+P + SG+ AS G+ + + Sbjct: 213 LINVQTDVFG---QILAQLKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLQAE 268 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + + D GV + P V+ + L + +VS + + + TT+ Sbjct: 269 GAVSRIESIDVGVSIDIQPRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLF 326 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G T+V++G +D Q G+P+L+KIP++ LF + + E++I + Sbjct: 327 LKNGQTVVISGATIEDNAQTSSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKAEI 383 >gi|308125791|ref|ZP_05777362.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030] gi|308114494|gb|EFO52034.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030] Length = 559 Score = 136 bits (343), Expect = 7e-30, Method: Composition-based stats. Identities = 60/317 (18%), Positives = 119/317 (37%), Gaps = 36/317 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + + T + ++++ L+I + QV Sbjct: 243 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 301 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231 ++ I + + ++G + T + + + Sbjct: 302 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGVG 361 Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + F V + + L AL++ + ++ P L + + Sbjct: 362 IDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKP 421 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIG 342 A G + Y SS+GATSVT + L TP + R+ L + P V+ Sbjct: 422 AYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKVVK 480 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S Sbjct: 481 TGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSY 540 Query: 403 FNREETEIFIAATPFLV 419 N ++E+ I TP +V Sbjct: 541 ENVGKSELLIFVTPKVV 557 >gi|171320148|ref|ZP_02909212.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] gi|171094623|gb|EDT39673.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] Length = 615 Score = 136 bits (343), Expect = 7e-30, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 96/256 (37%), Gaps = 30/256 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----------------------PSKSF 230 + ++ I ++ LKQ+G S S + Sbjct: 363 PRLIEIEARIIQIDEGALKQLGVDWRAHNSHIDLQTGTGLTSQNSYANGSLNPTFGSITL 422 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + + S+ VL ++ALE + RT A P +T + A Sbjct: 423 PGNDSVGLPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMD 482 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA 345 + Q + ++ + + GV L P V+ G +I L ++ V + Sbjct: 483 NKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVEEGGRTQIKLDVRI-VDGELSQQTV 539 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 ++P + +T + G +++AG D + GIP+LSK+P++GALFR++ Sbjct: 540 DNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGIPVLSKLPLVGALFRSTDRQD 599 Query: 406 EETEIFIAATPFLVKP 421 +E TP +++P Sbjct: 600 GHSERLFLVTPRVIEP 615 >gi|62185517|ref|YP_220302.1| general secretion pathway protein D [Chlamydophila abortus S26/3] gi|62148584|emb|CAH64356.1| probable general secretion pathway protein D [Chlamydophila abortus S26/3] Length = 753 Score = 136 bits (343), Expect = 7e-30, Method: Composition-based stats. Identities = 57/297 (19%), Positives = 114/297 (38%), Gaps = 10/297 (3%) Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 S I ++ S V G V+ + S+T + A K ++ L++ + Sbjct: 407 STISIDTASVGSVKEGSVKY----GNFIADSKTGTLIMVVEKEALPRIKMLLKKLDVP-K 461 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 V ++V + E + ++ G G S + + E G Sbjct: 462 KMVRIEVLLFERKLSNQRKAGLNLLRLGEEVCKKTSSTISWTSSGILEFLFKGNTGSSVV 521 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 ++ L +R A P++ ++ A + VS+ YG Sbjct: 522 PGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSADKEKAQYNRAQYG 580 Query: 314 VVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 +++ P + G+ + ++T+++ G NA + P R V +P G T+++ Sbjct: 581 IMIKMLPVINVGDEDGKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVII 640 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRD 426 GL ++GIP L +IP +G LF + +TE+F+ TP ++ P+ ++ Sbjct: 641 GGLRCKHASDSQDGIPFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILDNPIEKKE 697 >gi|294781789|ref|ZP_06747122.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA] gi|294481899|gb|EFG29667.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA] Length = 514 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 92/241 (38%), Gaps = 21/241 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 QV + I ++ ++ +++GF S + + G ++ Sbjct: 267 PKQVKISSQILDISNNLFEELGFDWVYRQNIASEERNTLTAIILGKAGLNGVGSTLNIVR 326 Query: 250 VLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTG 303 + S T L+ LE + + PTL SG+ F + + + + Sbjct: 327 QFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENKNDR 386 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353 T + G+++ P + I L I E+S+ N ++ Sbjct: 387 HTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDVNSGTYNSEGGSK 446 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V + +G TI++ GL K Q ++ IP+L IPI+ F+N+ RE ++++ Sbjct: 447 VGRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENSDMY 506 Query: 412 I 412 I Sbjct: 507 I 507 >gi|315178926|gb|ADT85840.1| fimbrial assembly protein [Vibrio furnissii NCTC 11218] Length = 557 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 66/369 (17%), Positives = 128/369 (34%), Gaps = 44/369 (11%) Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141 + + K + +Q L + E ++ A ++ +M+ Sbjct: 200 VDGNVILVAPKEE-------LDRREQQQLEKARMAEELGDLQSEIIKINFAKASDIAQMI 252 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 G V + + T + ++ L+I + QV ++ Sbjct: 253 GG----DGAVNMLSERGSISIDERTNALLLRELPDNIHVIRDIVASLDIPVK-QVQIEAR 307 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------------------A 232 I V L ++G + + ++ + + Sbjct: 308 IVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGLYDGSSDSGDGAAIDDFLNVN 367 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + F V + + L A++R + ++ P L + Q A G + Sbjct: 368 LAATSANASSIAFQVAKLGADTLLDLELSAMQRESKAEIISSPRLITTNKQPAYIEQGTE 427 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350 Y SS+GATSV + L TP + R+ L + P V+ G+ + Sbjct: 428 IPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEVVKTGTGEAVA 486 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ T V + +G T+VL G+ + + + +PLL +P+LGALFR S ++E+ Sbjct: 487 INTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGDLPLLGALFRRSYEQMGKSEL 546 Query: 411 FIAATPFLV 419 I TP +V Sbjct: 547 LIFVTPKVV 555 >gi|282896843|ref|ZP_06304849.1| pilQ(type II and III secretion system protein) [Raphidiopsis brookii D9] gi|281198252|gb|EFA73142.1| pilQ(type II and III secretion system protein) [Raphidiopsis brookii D9] Length = 522 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 19/245 (7%) Query: 192 GEDQVTLKVTIAEVRR------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 QV + + I +V + G + + G + + S Sbjct: 276 RRRQVKVNLKIIDVNLWGIENYNSSFSFGIGDNFLSNDQGIATFNFGNQRPFTGSGSVPT 335 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------V 298 S+ G+ +R F L A + L +P+L GQ+A+ Q + + Sbjct: 336 SLVGLPNR--FLAFLQAQVTNGNAKILTDPSLIVQEGQNANVKLTQQVIGQEKITRIDTP 393 Query: 299 SSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRK 355 +S + + G+ ++ + G I L + V PV + G + R Sbjct: 394 GNSREERIIEKEEVGLTVNVRVERIDDNGFISLSVAPVVKSPVNSESTGAGKVTLIAERS 453 Query: 356 ADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 ++ + L G T++L+G+++D + + +PLLS IP+LGALFR+++ +RE E+ + Sbjct: 454 LNSGLIRLRDGQTLLLSGIIQDQDRSVVTKVPLLSDIPLLGALFRSTKKDRERREVIVLL 513 Query: 415 TPFLV 419 TP ++ Sbjct: 514 TPRII 518 >gi|281356804|ref|ZP_06243295.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316931|gb|EFB00954.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 836 Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 104/314 (33%), Gaps = 74/314 (23%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------- 226 V++ L E V + E+ +D LK++ F + +T + Sbjct: 501 DTVIHELLDQQEPMVQILCKFIEISQDDLKELAFNYQLTVNGGAEANVMENGKYPRDVKF 560 Query: 227 --------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 + S G V D + L AL +A ++ L Sbjct: 561 GPNSNELLRYYRDETNSSGDSSTGNPTYNSTFSYVWQNADGTAIVANLFALNQADSMDVL 620 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS------------SSTGATSVTTHDYGVVLHFTP 320 P +T + GQ A + + S G+ T++ G+ P Sbjct: 621 GAPRVTTLPGQPAHIEMVTERYFPEDWEIVDLPNNNTGGSGDGSNEGTSYWRGISADPQP 680 Query: 321 TVLSPGR---IGLRIQTEV------------------------------SEPVIGVNAGD 347 S I IQ E+ S+ Sbjct: 681 NFESEPTKLGIVFDIQPEIDKERRTITAHVLLPVQTLSGWMIFDARTYDSDGNTDGEYYQ 740 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 MP + R +T + + G T+VL G+ +D ++ + + IP+L +PI+G LF++ + ++ Sbjct: 741 MPIFDKRSIETDITVYDGETVVLGGVAQDKVEIVNDKIPVLGDLPIVGRLFQSKYTDSQK 800 Query: 408 TEIFIAATPFLVKP 421 + + T LVKP Sbjct: 801 RNLLVFLTCRLVKP 814 >gi|171316796|ref|ZP_02906007.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] gi|171098054|gb|EDT42870.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] Length = 598 Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 95/272 (34%), Gaps = 8/272 (2%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 M T + T +++ L++ + ++ + EV Sbjct: 331 MAPTEERLPVIQADPGTNSVLVRDVPQRIDQYASLVSQLDVR-RQLIEIEAHVIEVDETA 389 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L+QIG G A FG S G + ++ L+ Sbjct: 390 LRQIGVNWGARSKHVGLQTGGGAPFGA---STGNTLTAVVGDSGRYLMGRINLLQLENKA 446 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-TVLSPGRI 328 R A P + + A + + + ++G + + G+ L P + GR Sbjct: 447 RLDASPKVATLDNVEAIMDNRSRFFVRVSGHTSGQ--LYSVSTGISLRVLPMVMNENGRQ 504 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 +++ + + I ++P T + ++++AG + + G+P Sbjct: 505 YIKLAVNIDDGQITNRTVDNIPIVNSSSIRTQAVIGKDESLLIAGYRVEGRSEGTFGVPG 564 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 LSKIP++GALFR S + + + TP ++ Sbjct: 565 LSKIPVVGALFRQSESSARKMDRIFLLTPRII 596 >gi|28899520|ref|NP_799125.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633] gi|28807756|dbj|BAC61009.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633] Length = 578 Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats. Identities = 60/317 (18%), Positives = 119/317 (37%), Gaps = 36/317 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + + T + ++++ L+I + QV Sbjct: 262 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 320 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231 ++ I + + ++G + T + + + Sbjct: 321 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGVG 380 Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + F V + + L AL++ + ++ P L + + Sbjct: 381 IDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKP 440 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIG 342 A G + Y SS+GATSVT + L TP + R+ L + P V+ Sbjct: 441 AYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKVVK 499 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S Sbjct: 500 TGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSY 559 Query: 403 FNREETEIFIAATPFLV 419 N ++E+ I TP +V Sbjct: 560 ENVGKSELLIFVTPKVV 576 >gi|171909907|ref|ZP_02925377.1| Type II secretory pathway component, protein D [Verrucomicrobium spinosum DSM 4136] Length = 665 Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 96/277 (34%), Gaps = 41/277 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------------SKSFAADFGGKFVSEG 242 Q+ ++V E RD K+ G S T SG + + +EG Sbjct: 272 QIAIEVKFFETSRDPAKEFGVDWSGTFGQSGLFRQVDSVTSDPETGQQTVNTTNIAQTEG 331 Query: 243 G--------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G VL L A+ + RT++ P + + Sbjct: 332 GYRADLSNLLSLGNLNEAKAFLAPSTAVLSAQDVNIKLRAMLKDQETRTVSYPRMVTTNN 391 Query: 283 QSASFTSGGQHL-------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + S + ST +S++ G V++ P + +I L + Sbjct: 392 REVVIRSVVNQPVLGGSASTSLGTGSTTTSSISYLPIGTVINILPKRMMDDKINLNLAIT 451 Query: 336 VSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 VS + + P R VEL +G T+ + GL + Q+ ++GIP+L KIPI Sbjct: 452 VSSIIGTEVIQGNPYPVASSRVYSAPVELNNGYTVAVGGLDEAREQEGEQGIPVLGKIPI 511 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 LG F+ + + I TP L+ +P Sbjct: 512 LGYAFKTKGKAKNHKNLMIFITPSLIDVRDGGLPEKP 548 >gi|205352890|ref|YP_002226691.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272671|emb|CAR37581.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|309243418|gb|ADO51994.1| SsaC [Salmonella enterica subsp. enterica serovar Gallinarum] gi|326627962|gb|EGE34305.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 497 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + S + + + + + + V I +V + Q+ Sbjct: 235 AADPRQNAVIVRDYASNMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +P + + + L +G +++L G + + IPLL Sbjct: 401 DLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFRN +V Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490 >gi|148270748|ref|YP_001245208.1| type II and III secretion system protein [Thermotoga petrophila RKU-1] gi|147736292|gb|ABQ47632.1| type II and III secretion system protein [Thermotoga petrophila RKU-1] Length = 387 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 100/237 (42%), Gaps = 7/237 (2%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + ++I QV + V + E+ RD ++G S G + F ++ Sbjct: 154 EEDLKKIDIPIP-QVKISVIVTEISRDYSNELGLN--SLDYSFGSGQEFNENWTATLGLV 210 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G +V+ + L LE + A+P + SG+ AS G+ + + Sbjct: 211 TGILNVQTDV-FGQILAKLKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLEAE 268 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + + D GV + P V+ + L + +VS + + + TT+ Sbjct: 269 GAVSRIESIDVGVSIEIQPRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLF 326 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G T+V++G +D Q G+P+L+KIP++ LF + + E++I + Sbjct: 327 LKNGQTVVISGATIEDSAQTGSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383 >gi|269138220|ref|YP_003294920.1| Type II secretory pathway, component PulD like protein [Edwardsiella tarda EIB202] gi|55981981|gb|AAV69411.1| EsaC [Edwardsiella tarda] gi|61743031|gb|AAX55251.1| EsaC [Edwardsiella tarda] gi|267983880|gb|ACY83709.1| Type II secretory pathway, component PulD like protein [Edwardsiella tarda EIB202] gi|304558263|gb|ADM40927.1| EsaC [Edwardsiella tarda FL6-60] Length = 494 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 63/362 (17%), Positives = 129/362 (35%), Gaps = 36/362 (9%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V S + + G + V + Q+ D+ +E++ + + ++ S+ Sbjct: 137 QVASANALQVNGVPACLSQVTTLAK---QLDEQDLNLEQNRETVAVFPLKYANASDTSYA 193 Query: 140 MVSDTVVLHGMVRTIQDSQRAVEL----SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 + +VV+ G+V +++ + + S++ S + S+ N + I Q Sbjct: 194 YRNQSVVVPGLVSVLREMAQGHAMPLPDSKSGTPPSNSSGLPTFSADLRQNAVLIRDRKQ 253 Query: 196 ------------------VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + + VTI +V + ++G S + G SF G Sbjct: 254 NMALYRQLIQQLDKRPTLIEISVTIIDVDAGDINELGIDWSASARIGGGQVSFNNSGGLN 313 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 S + + SF L ALE+ + + ++ P++ + A K Sbjct: 314 ADSFSSLIA-----NSGSFMVRLSALEQQSKAKIVSRPSVVTLDNVQAVLDRSITFYTKL 368 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEV-SEPVIGVNAGDMPSYRV 353 S + G ++ TP ++ +I L + E + A +P + Sbjct: 369 RSEKNPK--LEAITAGALMRVTPRLIRERGGNKILLILNIEDGRQGAPLSQAESLPQVQN 426 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + T L G ++L G ++++ Q IPLL IP++G LFR++ Sbjct: 427 AEIATQATLNLGQALLLGGFVQNENTQGVRKIPLLGDIPLIGGLFRSTDSKVHSVVRLFL 486 Query: 414 AT 415 Sbjct: 487 IK 488 >gi|207857100|ref|YP_002243751.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708903|emb|CAR33233.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 497 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +P + + + L +G +++L G + + IPLL Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFRN +V Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490 >gi|167842291|ref|ZP_02468975.1| type III secretion system EscC protein [Burkholderia thailandensis MSMB43] Length = 508 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 11/229 (4%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 V + V I +V L +G S + G S SF + S S Sbjct: 280 RKPKLVEISVAIIDVNAQDLSMLGVDWSASARIGGGSVSFNSGGEPDSGSFSTVVS---- 335 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + F L ALE+ + L+ P++ + A K S+ + + Sbjct: 336 -NTGQFMVRLSALEQNAKAQILSRPSVVTLDNMQAVLDRNITFYTKV--SAERVAKLESI 392 Query: 311 DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGG 366 G +L TP V+ G+ + + V + +P + T L G Sbjct: 393 STGSLLRVTPRVIGDPGKQEIMLTLMVQDGRQTGALSKQEPLPQTLNSEIATHALLKEGQ 452 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++L G ++D++ + + IPLL IP+LG LF+ N+ T Sbjct: 453 ALLLGGFVQDELSEGERKIPLLGDIPLLGNLFKMRHKNQRHTVRLFLIK 501 >gi|302877407|ref|YP_003845971.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2] gi|302580196|gb|ADL54207.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2] Length = 705 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 94/272 (34%), Gaps = 14/272 (5%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A+ T +K++ +++ QV ++ + +G + Sbjct: 431 AMADVRTNTLFVKDTPSRLEEVRKLLKQIDVPVR-QVMIEARFVSAGDSFARSLGGKLGY 489 Query: 220 TG-----SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------FETVLHALERATA 268 + + + +L F+ L+A E Sbjct: 490 ASPANAANGGAATTGAINGVNVNLPNSLAGTGGGLLLSLFNPAATKVLTLELNASETDGI 549 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + +A P + AS SG + Y + + + L TP + I Sbjct: 550 TKNIASPRVVTADKTKASIKSGVEIPYTIAGTVGSPPTTAFKTAALSLDVTPRITPDNNI 609 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + + S+ +G +PS + T V + +GGT+V+ G+ D+ +PLL Sbjct: 610 NMTLVA--SQDTVGALYSGVPSINSKMVTTEVLIENGGTVVVGGVFTQDVADTVNKVPLL 667 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+LG +F+N + E+ I TP +++ Sbjct: 668 GDIPVLGWMFKNKVKTDAKNELLIFITPKIMQ 699 >gi|83591449|ref|YP_425201.1| type II and III secretion system protein [Rhodospirillum rubrum ATCC 11170] gi|83574363|gb|ABC20914.1| type II and III secretion system protein [Rhodospirillum rubrum ATCC 11170] Length = 547 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 100/266 (37%), Gaps = 31/266 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 QV ++ I EV + G P + + + Sbjct: 271 QVLIEAKIVEVTLKDQYRGGIDWKVLTDGGEFLLDIPGAAGVVAPPLTDAAATLSLGTRA 330 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------- 299 L ++ ++ A+RTL+ P LT ++ Q+A +Y V Sbjct: 331 TLGPVELSALVQFIKTFGAVRTLSSPRLTVMNNQTAVLKVAENEVYFVVDVDTVTSDGVT 390 Query: 300 SSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGVNAGD----------- 347 +T ++ + T G+V+ P GR+ L ++ +S V Sbjct: 391 QTTYSSEINTVPIGLVMTVQPSVEPGGGRVTLGLRPTISRIADRVADPAVSLQNLSVQSL 450 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P VR+ D+ V + +G +V+ GL+++ + + +EG+P L +P++G FR+ + + Sbjct: 451 IPVVEVRELDSVVTIDNGAVVVMGGLMQERMGRDEEGVPGLGDVPLIGRAFRHDSADTDV 510 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDH 433 E+ + ++ S P D Sbjct: 511 VELVVLLRATVI----GGAHSHPADR 532 >gi|329943286|ref|ZP_08292060.1| bacterial type II and III secretion system family protein [Chlamydophila psittaci Cal10] gi|332287864|ref|YP_004422765.1| putative general secretion pathway protein D [Chlamydophila psittaci 6BC] gi|313848436|emb|CBY17440.1| probable general secretion pathway protein D [Chlamydophila psittaci RD1] gi|325507393|gb|ADZ19031.1| putative general secretion pathway protein D [Chlamydophila psittaci 6BC] gi|328814833|gb|EGF84823.1| bacterial type II and III secretion system family protein [Chlamydophila psittaci Cal10] gi|328915126|gb|AEB55959.1| general secretion pathway protein D [Chlamydophila psittaci 6BC] Length = 753 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 94/238 (39%), Gaps = 5/238 (2%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + V ++V + E + ++ G G S A + + E G Sbjct: 461 KKMVRIEVLLFERKLSSQRKAGLNLLRLGEEVCKKSSSAISWTSSGILEFLFKGNTGASL 520 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 ++ L +R A P++ ++ A + VS+ Y Sbjct: 521 VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSADKEKAQYNRAQY 579 Query: 313 GVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G+++ P + G+ + ++T+++ G NA + P R V +P G T++ Sbjct: 580 GIMIKMLPVINVGDEDGKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVI 639 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRD 426 + GL ++GIP L +IP +G LF + +TE+F+ TP ++ P+ ++ Sbjct: 640 IGGLRCKHASDSQDGIPFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILDNPIEKKE 697 >gi|167551637|ref|ZP_02345391.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168263775|ref|ZP_02685748.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463196|ref|ZP_02697127.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194442462|ref|YP_002040647.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|198244927|ref|YP_002215736.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|194401125|gb|ACF61347.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195633943|gb|EDX52295.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197939443|gb|ACH76776.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205323577|gb|EDZ11416.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205347635|gb|EDZ34266.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|326623484|gb|EGE29829.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 497 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +P + + + L +G +++L G + + IPLL Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFRN +V Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490 >gi|197247911|ref|YP_002146647.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211614|gb|ACH49011.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 497 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +P + + + L +G +++L G + + IPLL Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFRN +V Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490 >gi|16764744|ref|NP_460359.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|1498307|gb|AAC44301.1| SpiA [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419915|gb|AAL20318.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261246600|emb|CBG24410.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993282|gb|ACY88167.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157929|emb|CBW17424.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912379|dbj|BAJ36353.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224019|gb|EFX49082.1| Secretion system apparatus SsaC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129666|gb|ADX17096.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988281|gb|AEF07264.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 497 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +P + + + L +G +++L G + + IPLL Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFRN +V Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490 >gi|161614190|ref|YP_001588155.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363554|gb|ABX67322.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 497 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +P + + + L +G +++L G + + IPLL Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFRN +V Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490 >gi|56413635|ref|YP_150710.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362559|ref|YP_002142196.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127892|gb|AAV77398.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094036|emb|CAR59532.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 497 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +P + + + L +G +++L G + + IPLL Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFRN +V Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490 >gi|213024547|ref|ZP_03338994.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 284 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 93/251 (37%), Gaps = 21/251 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + ++ L++A V L + I ++ + L+++G S + G + Sbjct: 13 EMLVKALDVAKRH-VELSLWIVDLNKSDLERLGTSWS------------GSITIGDKLGV 59 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S LD F ++ALE ++ P L A F + K + Sbjct: 60 SLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGER 119 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKA 356 ++ YG ++ P + G+I + + E + +P Sbjct: 120 N--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLI 177 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T +P G ++++ G +D + IP+L K+P++G+LFR S N+ P Sbjct: 178 STIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRVFMIEP 237 Query: 417 F-LVKPVAMRD 426 +V P+ Sbjct: 238 KEIVDPLTPDA 248 >gi|168233588|ref|ZP_02658646.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239278|ref|ZP_02664336.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194471885|ref|ZP_03077869.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734057|ref|YP_002114408.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204927561|ref|ZP_03218762.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194458249|gb|EDX47088.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709559|gb|ACF88780.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288005|gb|EDY27392.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322903|gb|EDZ08099.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205332374|gb|EDZ19138.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 497 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +P + + + L +G +++L G + + IPLL Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFRN +V Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490 >gi|300693821|ref|YP_003749794.1| type III secretion protein [Ralstonia solanacearum PSI07] gi|299075858|emb|CBJ35167.1| Type III secretion protein [Ralstonia solanacearum PSI07] Length = 590 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 23/245 (9%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241 + +I E+ L+Q+G + S +A+ Sbjct: 348 ISASIIEISETALEQLGVDWRLHNSRFDLQTGNSANTMLNNPGSLDSVATTAGAAAAIAA 407 Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG S + AL++ R A P + + A + Sbjct: 408 TPAGGVLSAVIGGSSRYLMARISALQQTNQARITANPKVATLDNTEAVMDNRQNFYVPVA 467 Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356 + + GV L P V+ G + +R+ + + I G++P + Sbjct: 468 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPVTSQSEI 525 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT + G ++++AG D + + +P LSKIP++GALFR + + + TP Sbjct: 526 DTQALINEGESLLIAGYSVDQQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVTP 585 Query: 417 FLVKP 421 ++ P Sbjct: 586 RVITP 590 >gi|322615120|gb|EFY12043.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619963|gb|EFY16836.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622274|gb|EFY19119.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627796|gb|EFY24586.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632859|gb|EFY29603.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636650|gb|EFY33353.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641157|gb|EFY37799.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644908|gb|EFY41441.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650255|gb|EFY46669.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655829|gb|EFY52131.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660154|gb|EFY56393.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665279|gb|EFY61467.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669536|gb|EFY65684.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673462|gb|EFY69564.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677390|gb|EFY73454.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679947|gb|EFY75986.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687419|gb|EFY83391.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193477|gb|EFZ78684.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198609|gb|EFZ83710.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323208655|gb|EFZ93593.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211192|gb|EFZ96039.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217632|gb|EGA02347.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218980|gb|EGA03490.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223665|gb|EGA07975.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229434|gb|EGA13557.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232657|gb|EGA16753.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240305|gb|EGA24349.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242706|gb|EGA26727.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245918|gb|EGA29906.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252482|gb|EGA36329.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255189|gb|EGA38968.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260064|gb|EGA43689.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267172|gb|EGA50657.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271505|gb|EGA54926.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 497 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +P + + + L +G +++L G + + IPLL Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFRN +V Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490 >gi|90410268|ref|ZP_01218284.1| general secretion pathway protein D precursor [Photobacterium profundum 3TCK] gi|90328509|gb|EAS44793.1| general secretion pathway protein D precursor [Photobacterium profundum 3TCK] Length = 406 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 109/280 (38%), Gaps = 12/280 (4%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIA 203 VL + + Q A + + + S ++ NL+ QV + + Sbjct: 133 VLTAYSKNTGEMQTAYSVITLPNINAMIVTGSPSQLTQIDNLIKRVDVRRKQVLIDAVVM 192 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + R + IG + +G K +GG+ + D+ ++ A+ Sbjct: 193 DTRLGDSESIGVSLDVLLEGAGFRLISNPVSSIKESFKGGNI----IYDKGDVSALVTAI 248 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFT 319 + + L++P L + + S G + + ++ + + G+ L Sbjct: 249 TQNQNTKLLSKPYLLVMDREKGSINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLSVV 308 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P +++ + L I S A D+ R+ +T V++ G +I+L GL+ D+ + Sbjct: 309 PHIVND-SVVLGINQTSSSVSDSDIASDI-ITNNREINTVVQVLDGQSIILGGLVSDESR 366 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + G+PLL IP +G LFR + +++ + ++ Sbjct: 367 KSESGVPLLKDIPWIGGLFRTTSDKSVSSQMSVLIKVTVI 406 >gi|308126655|ref|ZP_05911606.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037] gi|308108444|gb|EFO45984.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037] Length = 582 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 60/319 (18%), Positives = 119/319 (37%), Gaps = 38/319 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + + T + ++++ L+I + QV Sbjct: 264 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 322 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231 ++ I + + ++G + T + + + Sbjct: 323 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGDG 382 Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + F V + + L AL++ + ++ P L + Sbjct: 383 VGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 442 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340 + A G + Y SS+GATSVT + L TP + R+ L + P V Sbjct: 443 KPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKV 501 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR Sbjct: 502 VKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 561 Query: 401 SRFNREETEIFIAATPFLV 419 S N ++E+ I TP +V Sbjct: 562 SYENVGKSELLIFVTPKVV 580 >gi|328472347|gb|EGF43217.1| fimbrial assembly protein [Vibrio parahaemolyticus 10329] Length = 570 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 60/319 (18%), Positives = 119/319 (37%), Gaps = 38/319 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + + T + ++++ L+I + QV Sbjct: 252 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 310 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231 ++ I + + ++G + T + + + Sbjct: 311 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGDG 370 Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + F V + + L AL++ + ++ P L + Sbjct: 371 VGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 430 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340 + A G + Y SS+GATSVT + L TP + R+ L + P V Sbjct: 431 KPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKV 489 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR Sbjct: 490 VKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 549 Query: 401 SRFNREETEIFIAATPFLV 419 S N ++E+ I TP +V Sbjct: 550 SYENVGKSELLIFVTPKVV 568 >gi|16760517|ref|NP_456134.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141723|ref|NP_805065.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|168822263|ref|ZP_02834263.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|213051564|ref|ZP_03344442.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428550|ref|ZP_03361300.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213647233|ref|ZP_03377286.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854968|ref|ZP_03383208.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238913201|ref|ZP_04657038.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|25511812|pir||AB0700 probable outer membrane secretory protein spiA [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502813|emb|CAD01971.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137351|gb|AAO68914.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|205341330|gb|EDZ28094.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086125|emb|CBY95899.1| Yop proteins translocation protein C Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 497 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +P + + + L +G +++L G + + IPLL Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFRN +V Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490 >gi|197264837|ref|ZP_03164911.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243092|gb|EDY25712.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 497 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +P + + + L +G +++L G + + IPLL Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFRN +V Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490 >gi|161503511|ref|YP_001570623.1| hypothetical protein SARI_01587 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864858|gb|ABX21481.1| hypothetical protein SARI_01587 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 484 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 86/230 (37%), Gaps = 10/230 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 + + V I +V + Q+G S G +F + + + D Sbjct: 254 QMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNSGPNEGDT----NGFSTVISDT 309 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F L+ALE+++ L++P++ ++ A K + + G Sbjct: 310 SNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTG 367 Query: 314 VVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIV 369 +L TP +L+ +I L + + + + +P + + + L +G +++ Sbjct: 368 SLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETNPLPEVQNSEIASQATLLAGQSLL 427 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G + + + IPLL IP+LG LFRN +V Sbjct: 428 LGGFKQGKQIRSQNKIPLLGDIPVLGHLFRNDTTQVHSVIRLFLIKASVV 477 >gi|62179985|ref|YP_216402.1| secretion system apparatus SsaC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168240906|ref|ZP_02665838.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448307|ref|YP_002045398.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200390529|ref|ZP_03217140.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|224584095|ref|YP_002637893.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62127618|gb|AAX65321.1| Secretion system apparatus SsaC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194406611|gb|ACF66830.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199602974|gb|EDZ01520.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205339640|gb|EDZ26404.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224468622|gb|ACN46452.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714452|gb|EFZ06023.1| secretion system apparatus SsaC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 497 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +P + + + L +G +++L G + + IPLL Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFRN +V Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490 >gi|269302489|gb|ACZ32589.1| type II/III secretion system protein [Chlamydophila pneumoniae LPCoLN] Length = 919 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 61/316 (19%), Positives = 115/316 (36%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITG---- 221 ++ S + +V++LLN QV ++V I + + G Q G Sbjct: 565 VNNSIVIIGNQGNVDRVVSLLNGLDLPPKQVYIEVLILDTSLEKSWDFGVQWVALGDEQS 624 Query: 222 ---------SSSGPSKSFAADFGGKFVSEGG--------------------DFSVKGVLD 252 +++G + A + G F + + + Sbjct: 625 KVAYASGLLNNTGIATPTKATVPPGTPNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGN 684 Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---- 300 S +L AL++ + P + A Q ASF G Y+T ++ Sbjct: 685 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQE 744 Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 T ++ D GV L T TV + L+I+ +SE + P A T Sbjct: 745 TGTVTQNIDYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSASGSLT-PVTDKTYAATR 803 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 804 LQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 863 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 864 SSFEEGTRVTNKEGYR 879 >gi|84785906|gb|ABC62092.1| secretion and cellular translocation protein C [Chlamydophila psittaci] Length = 672 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 58/316 (18%), Positives = 108/316 (34%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ S ++ KV++LLN QV ++V I E + G Q G G Sbjct: 318 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 377 Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252 + ++ F + + + Sbjct: 378 KVAYASGLLSNTGLANPAKSTVPPAKPSTGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 437 Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299 S +L AL++ + P + A Q ASF G ++T Sbjct: 438 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 497 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + T ++ D GV L TV + L+I+ +SE P A T Sbjct: 498 TGTVTQNIEYEDIGVNLVVASTVAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 556 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ + P ++ Sbjct: 557 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNTMMFIKPKVI 616 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 617 SSFEEGTKLTNKEGYR 632 >gi|330443957|ref|YP_004376943.1| type II and III secretion system protein [Chlamydophila pecorum E58] gi|328807067|gb|AEB41240.1| Bacterial type II and III secretion system protein [Chlamydophila pecorum E58] Length = 751 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 99/258 (38%), Gaps = 9/258 (3%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + V ++V + E + ++ G G KS + +F +KG Sbjct: 457 KKMVRIEVLLFERKLSHDRKSGLNLLRLGEEI-SKKSLTPTVSWGSGAGILEFLLKGATG 515 Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 ++ L +R A P++ ++ A + VS+ Sbjct: 516 CSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVDEM-SIAVSAENDKALYNR 574 Query: 310 HDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG+++ P + G+ + ++T+++ G N D P R V + G Sbjct: 575 AQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNMDDRPEVTRRNITNKVRIADGE 634 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425 ++++ GL + +EGIP L +IP LG LF + + TE+F+ TP ++ P+ + Sbjct: 635 SVIIGGLRCKHMSDSQEGIPFLGEIPGLGKLFSMNAVSDSLTEMFVFITPKILDNPMEKQ 694 Query: 426 DLSRPDDHYSVEDDAKAF 443 + S + + F Sbjct: 695 ERYEEALLASRPGEDEEF 712 >gi|149200051|ref|ZP_01877076.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155] gi|149136809|gb|EDM25237.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155] Length = 825 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 56/333 (16%), Positives = 110/333 (33%), Gaps = 65/333 (19%) Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 ++ N + ++N LN G QV ++ + ++ + ++++GF TG Sbjct: 490 VASVNRLVVTNTVNNNQLIQDIINNLN-TGAAQVNVEAKVVDITWNAMQELGFLWRWTGP 548 Query: 223 SSGPSKSFAADFGGKFVSEGGD-----------------------FSVKGVLDRFSFETV 259 + + + + + + + Sbjct: 549 RTPNHTLTGDRIFAQSNTPASGGERFDNNIRGINEVVTSQEGPVQLAADLIFGNQELQMM 608 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----------GATSVT 308 + AL+++ L P + SG++A + T Sbjct: 609 IRALDQSDTNEILMAPNVLTKSGETAVIRVVTSQQFVEEWEEGEFSNSTEIVPSTPTFGE 668 Query: 309 THDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGD-------------------- 347 D G VL TP V I + + E E + + Sbjct: 669 EKDIGFVLSVTPEVDPNNTVITMEVNPEFIEFLGYDTDLNTSTELQLFDINGSPFTYQAE 728 Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 MP + VR +T V+L G T L GL+++++ + + IP +S IP +G LF+N Sbjct: 729 FIYSMPIFEVRSIETRVKLWDGQTFTLGGLIRENVWTVDDSIPYISAIPFVGRLFQNKGE 788 Query: 404 NREETEIFIAATPFLVK----PVAMRDLS-RPD 431 E+ + + T L+ P+ + + PD Sbjct: 789 ASEKRSLLMFITARLITESGLPLRINQVPGLPD 821 >gi|238918877|ref|YP_002932391.1| type III secretion outer membrane pore, YscC/HrcC family, [Edwardsiella ictaluri 93-146] gi|84663086|gb|ABC60068.1| EsaC [Edwardsiella ictaluri 93-146] gi|238868445|gb|ACR68156.1| type III secretion outer membrane pore, YscC/HrcC family, putative [Edwardsiella ictaluri 93-146] Length = 494 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 60/335 (17%), Positives = 119/335 (35%), Gaps = 33/335 (9%) Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL--- 163 KQ+ D+ E++ +E+ ++ S+ + +VV+ G+V +++ + + Sbjct: 161 KQLDEQDLNQEQNRETVEVFPLKYANASDTSYTYRNQSVVVPGLVSVLREMAQGHAMPLP 220 Query: 164 -SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ------------------VTLKVTIAE 204 S++ S + S+ N + I Q + + VTI + Sbjct: 221 DSKSSTPPSNSSGLPTFSADLRQNAVLIRDRKQNMALYRQLIQRLDKRPTLIEISVTIID 280 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V + Q+G S + G SF S S + SF L ALE Sbjct: 281 VDAGDINQLGIDWSASARIGGGQVSFNNGGRLNSDSFSSLIS-----NSGSFMVRLSALE 335 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT--- 321 + + + ++ P++ + A K S + G ++ TP Sbjct: 336 QQSKAKIVSRPSVVTLDNVQAVLDRSITFYTKLSSEKNPK--LEAITSGALMRVTPRLIR 393 Query: 322 VLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 ++ L + E + +P + + T L G ++L G ++++ Q Sbjct: 394 ENGGNKVLLILNIEDGRQGAPLSQTESLPQVQNAEIATQATLNLGQALLLGGFVQNENTQ 453 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 IPLL +P++G LFR++ N Sbjct: 454 GVRKIPLLGDLPLIGGLFRSTDRNTLSVVRLFLIK 488 >gi|15618612|ref|NP_224898.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydophila pneumoniae CWL029] gi|15836234|ref|NP_300758.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138] gi|16752338|ref|NP_444596.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39] gi|33242060|ref|NP_877001.1| outer membrane secretion protein Q [Chlamydophila pneumoniae TW-183] gi|4377005|gb|AAD18841.1| probable Yop proteins translocation protein C/general secretion pathway protein [Chlamydophila pneumoniae CWL029] gi|6672030|dbj|BAA88652.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae] gi|7188983|gb|AAF37937.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39] gi|8979074|dbj|BAA98909.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138] gi|33236570|gb|AAP98658.1| outer membrane secretion protein Q [Chlamydophila pneumoniae TW-183] Length = 919 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 61/316 (19%), Positives = 114/316 (36%), Gaps = 49/316 (15%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITG---- 221 ++ S + +V+ LLN QV ++V I + + G Q G Sbjct: 565 VNNSIVIIGNQGNVDRVIGLLNGLDLPPKQVYIEVLILDTSLEKSWDFGVQWVALGDEQS 624 Query: 222 ---------SSSGPSKSFAADFGGKFVSEGG--------------------DFSVKGVLD 252 +++G + A + G F + + + Sbjct: 625 KVAYASGLLNNTGIATPTKATVPPGTPNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGN 684 Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---- 300 S +L AL++ + P + A Q ASF G Y+T ++ Sbjct: 685 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQE 744 Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 T ++ D GV L T TV + L+I+ +SE + P A T Sbjct: 745 TGTVTQNIDYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSASGSLT-PVTDKTYAATR 803 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++P G +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 804 LQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 863 Query: 420 KPVAMRDLSRPDDHYS 435 + Y Sbjct: 864 SSFEEGTRVTNKEGYR 879 >gi|86605695|ref|YP_474458.1| type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab] gi|86554237|gb|ABC99195.1| putative type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab] Length = 723 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 89/256 (34%), Gaps = 28/256 (10%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--------KFVSEGG 243 QV + E+ D +G + FGG V G Sbjct: 466 RSRQVLISARFIEINLDNNSSLGVALGSASGNFALGSGDNTVFGGTPLDQPAGSSVPNVG 525 Query: 244 DFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F G F + A + + LA+P + + A+ G + Sbjct: 526 SFPAAGTGGSLVFNTLNRLQQSLAARIDAAIASGTAKILADPKVVVANNTGAAIVVGQEV 585 Query: 294 LYKTVSSSTGATSVTTH-----DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGD 347 + + AT ++T + GV L + G I L + ++S + D Sbjct: 586 ITNRRLQTDPATGISTVVFEKGNAGVNLLIQNVRIDDNGYITLNLLPQISSIGSQITLSD 645 Query: 348 MPSY---RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 R T L T+ L GL++++ + + +PLLS+IP+LG+LFR Sbjct: 646 GTVISLLNQRSVGTLQTRLKDRETLFLGGLIQEEDRVSVDKVPLLSEIPLLGSLFRRQNT 705 Query: 404 NREETEIFIAATPFLV 419 +E+ + TP ++ Sbjct: 706 TNTRSEVVVLITPVIL 721 >gi|238759396|ref|ZP_04620561.1| Possible type III secretion system protein [Yersinia aldovae ATCC 35236] gi|238702423|gb|EEP94975.1| Possible type III secretion system protein [Yersinia aldovae ATCC 35236] Length = 557 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 85/262 (32%), Gaps = 22/262 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L + I +V + + +G + F+ + D Sbjct: 302 RSQVELSLWIIDVTQSKVDDLGVRWEA--------------GNIGVAGGSVTFNRSTLSD 347 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +F + A+ + R ++ P + A F + + ++ Y Sbjct: 348 SKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARV--EGDRVATLEQVTY 405 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGT 367 G ++ P + + + + E G +P +T + + Sbjct: 406 GTMISVLPRLSGGSGVEMEVNIEDGGLNRDNTGKVADIGGLPEVNRTNINTVARIGRDKS 465 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +++ G +D +++ + IPLLS IP+LG LF+ N+++ P L+ D Sbjct: 466 LLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLLDENEAWDG 525 Query: 428 SRPDDHYSVEDDAKAFFFNRVN 449 + D+ V Sbjct: 526 RQFSDN-ERLTRHDGQLRGTVE 546 >gi|167587171|ref|ZP_02379559.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia ubonensis Bu] Length = 341 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 93/256 (36%), Gaps = 30/256 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + ++ + E+ LKQ+G S + + + + + Sbjct: 89 PRLIEIEARMIEIDEGALKQLGIDWRAHNSHFDLQTGTGLTSQNSYANGSLNPTFGSISL 148 Query: 253 RFS------------------------FETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + ++ALE A RT A P +T + A Sbjct: 149 SGNDSVSVPASPLGLSLTAVLGDAGRYLLARINALESANQARTDASPKVTTLDNVEAVMD 208 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA 345 + Q + ++ + + GV L P V+ G +I L ++ V + Sbjct: 209 NKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVEEGGRTQIKLDVRI-VDGELSRQTV 265 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 ++P + +T + G +++AG D + G+P+LSK+P++G LFR++ Sbjct: 266 DNIPVIVSTEINTQAFIEQGQALLIAGYKMDARSSTQSGVPVLSKLPLIGGLFRSTDKED 325 Query: 406 EETEIFIAATPFLVKP 421 +E TP +++P Sbjct: 326 SHSERLFLVTPRVIEP 341 >gi|323978511|gb|EGB73593.1| YscC/HrcC family protein type III secretion outer membrane pore [Escherichia coli TW10509] Length = 567 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 67/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G A V+ + + + + +I+ L+ D + + + Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258 Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 + T ++ ++ + + +K++ L+I + L + I ++ Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L+Q+G S G + + LD F + AL + Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P + A F + K V T + YG ++ P S Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFASRN 424 Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + E N D+P T +P G ++++ G +D Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520 >gi|320662066|gb|EFX29467.1| type III secretion system outer membrane pore InvG [Escherichia coli O55:H7 str. USDA 5905] Length = 567 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G A V+ + + + + +I+ L+ D + + + Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258 Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 + T ++ ++ + + +K++ L+I + L + I ++ Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L+Q+G S G + + LD F + AL + Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P + A F + K V T + YG ++ P + Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424 Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + E N D+P T +P G ++++ G +D Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520 >gi|269964448|ref|ZP_06178689.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B] gi|269830786|gb|EEZ85004.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B] Length = 581 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 59/318 (18%), Positives = 118/318 (37%), Gaps = 37/318 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + + T ++++ L+I + QV Sbjct: 264 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 322 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231 ++ I + + ++G + T + + + Sbjct: 323 QIEARIVTINEGNMDELGIRWGFTSINGSNTVGGSIENNLATIGLYNGEGGDDGGDGDGV 382 Query: 232 --------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + F V + + L AL++ + ++ P L + + Sbjct: 383 GIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKK 442 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VI 341 A G + Y SS+GAT+VT + L TP + R+ L + P V+ Sbjct: 443 PAYIEQGTEIPYLES-SSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVV 501 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S Sbjct: 502 KTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRS 561 Query: 402 RFNREETEIFIAATPFLV 419 N ++E+ I TP +V Sbjct: 562 YENVGKSELLIFVTPKVV 579 >gi|323202935|gb|EFZ87970.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 429 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 167 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 218 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 219 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 274 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 275 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 332 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +P + + + L +G +++L G + + IPLL Sbjct: 333 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 392 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LFRN +V Sbjct: 393 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 422 >gi|163803103|ref|ZP_02196987.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4] gi|159173095|gb|EDP57927.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4] Length = 559 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 34/269 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFV- 239 +++ L+I + QV ++ I + + ++G + ++ + +G S ++ + Sbjct: 291 EIIQSLDIPVK-QVQIEARIVMINEGSMDELGVRWGLSSADAGYRLGGSIESNLATIGLY 349 Query: 240 ---------------------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 + F V + + L AL++ + + Sbjct: 350 DGGDGDDSSSVDIDDLLNVNLAVTRPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIV 409 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + P L + + A G + Y SS+GATSV + L TP + R+ L + Sbjct: 410 SSPRLITTNKKPAYIEQGTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDL 468 Query: 333 QTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 P V+ G+ + ++ T V + +G T+VL G+ + I + +PLL Sbjct: 469 SVTQDRPGQVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSITNSVDKVPLLGD 528 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 +P+LGALFR + N ++E+ I TP +V Sbjct: 529 LPLLGALFRRTYENVGKSELLIFVTPKVV 557 >gi|90412668|ref|ZP_01220670.1| putative type II secretory pathway, component EpsD [Photobacterium profundum 3TCK] gi|90326476|gb|EAS42888.1| putative type II secretory pathway, component EpsD [Photobacterium profundum 3TCK] Length = 406 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 109/280 (38%), Gaps = 12/280 (4%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIA 203 VL + + Q A + S + S ++ NL+ QV + + Sbjct: 133 VLTAYSKNTGEMQTAYSVITLPNINSMIVTGSPSQLTQIDNLIKRVDVRRKQVLIDAVVM 192 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + R + IG + +G K +GG+ + D+ ++ A+ Sbjct: 193 DTRLGDSESIGVSLDVLLEGAGFRLISNPVASIKESFKGGNI----IYDKGDVSALVTAI 248 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFT 319 + + L++P L + + + G + + ++ + + G+ L Sbjct: 249 TQNQNTKLLSKPYLLVMDREKGAINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLSVV 308 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P +++ + L I S A D+ R+ +T V++ G +I+L GL+ D+ + Sbjct: 309 PHIVND-SVVLAINQTSSSVSDSDIASDI-ITNNREINTVVQVLDGQSIILGGLVSDESR 366 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + G+PLL IP +G LFR + +++ + ++ Sbjct: 367 KSESGVPLLKDIPWIGGLFRTTSDKSVSSQMSVLIKVTVI 406 >gi|323966662|gb|EGB62094.1| YscC/HrcC family protein type III secretion outer membrane pore [Escherichia coli M863] Length = 567 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 67/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G A V+ + + + + +I+ L+ D + + + Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258 Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 + T ++ ++ + + +K++ L+I + L + I ++ Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L+Q+G S G + + LD F + AL + Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P + A F + K V T + YG ++ P S Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFASRN 424 Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + E N D+P T +P G ++++ G +D Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520 >gi|218706369|ref|YP_002413888.1| protein invG [Escherichia coli UMN026] gi|293406360|ref|ZP_06650286.1| invG [Escherichia coli FVEC1412] gi|293412219|ref|ZP_06654942.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B354] gi|298382096|ref|ZP_06991693.1| type III secretion protein SctC [Escherichia coli FVEC1302] gi|300896248|ref|ZP_07114795.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 198-1] gi|331674348|ref|ZP_08375108.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli TA280] gi|62085071|gb|AAX62936.1| putative type III secretion apparatus protein [Escherichia coli] gi|218433466|emb|CAR14368.1| Protein invG precursor [Escherichia coli UMN026] gi|284922811|emb|CBG35899.1| type III secretion system protein [Escherichia coli 042] gi|291426366|gb|EFE99398.1| invG [Escherichia coli FVEC1412] gi|291468990|gb|EFF11481.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B354] gi|298277236|gb|EFI18752.1| type III secretion protein SctC [Escherichia coli FVEC1302] gi|300359869|gb|EFJ75739.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 198-1] gi|331068442|gb|EGI39837.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli TA280] Length = 567 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 67/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G A V+ + + + + +I+ L+ D + + + Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258 Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 + T ++ ++ + + +K++ L+I + L + I ++ Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L+Q+G S G + + LD F + AL + Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P + A F + K V T + YG ++ P S Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFASRN 424 Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + E N D+P T +P G ++++ G +D Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520 >gi|291284183|ref|YP_003501001.1| putative type III secretion apparatus protein [Escherichia coli O55:H7 str. CB9615] gi|290764056|gb|ADD58017.1| Putative type III secretion apparatus protein [Escherichia coli O55:H7 str. CB9615] Length = 567 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G A V+ + + + + +I+ L+ D + + + Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258 Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 + T ++ ++ + + +K++ L+I + L + I ++ Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L+Q+G S G + + LD F + AL + Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P + A F + K V T + YG ++ P + Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424 Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + E N D+P T +P G ++++ G +D Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520 >gi|167828524|ref|ZP_02459995.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 9] gi|226199138|ref|ZP_03794700.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|225928913|gb|EEH24938.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] Length = 588 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 27/262 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223 ++ L+I + ++ I E+ D+L++IG S Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385 Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + A + G + + AL+ + ++ A P + + Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339 A + + K ++ + + GV L P ++ G +++ V++ Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503 Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVK 420 R ++ E +P ++ Sbjct: 564 RYHSDSQNHMERVFLLSPRIID 585 >gi|320107862|ref|YP_004183452.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] gi|319926383|gb|ADV83458.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] Length = 810 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 70/402 (17%), Positives = 128/402 (31%), Gaps = 50/402 (12%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS-PRTMYLFGKNVGQ-----ANVIL 101 + IS +I + + + V D+ S + + GK G + Sbjct: 205 QGISKLAGLNVIFDPDYNSRRISV------DLSNVSLTNALRIVGKLAGTFWSPLTENTI 258 Query: 102 IGHDGKQMLNLD-------------ILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVL 147 + + D + + D + LR + + + + + +V+ Sbjct: 259 FVAQNNRAKHTDNDSLAVETFYLTNMSQQNDANEVVTALRNLLDPSTKVFLLASQNAIVI 318 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 + ++ ++ + + + S+ + L I Sbjct: 319 RATPAELVLVEKLIDDFDRIRPEVVVDVAVLEVSRDLERNLGITLP-------------- 364 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + Q S SSS S S + ++AL + Sbjct: 365 -TSFSLSAQASNANSSSSSSSSTTSSSTSGLTLNTLANLNGTNFAVTLSSASVNALLSDS 423 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSSTGATSVTTHDYGVVLHFTP 320 R L P + A GQ A+ G + S++T T T D GV + TP Sbjct: 424 DTRVLQNPRVRASDGQQATLKIGSKIPVATGSTTSTLTSTATATTQFTYVDVGVNIDMTP 483 Query: 321 TVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TV G++ L+++ EVS + P R ++L G +LAGLL+ Sbjct: 484 TVHLDGQVSLKMKIEVSSQTGTTTISGVSEPIISQRVVQQVIQLKDGEPSILAGLLQQSD 543 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G P L +IP L F + + EI P +V+ Sbjct: 544 TKSVSGTPGLGEIPFLKYFFSSQDKKQSSDEIVFLLIPHIVR 585 >gi|15803397|ref|NP_289430.1| type III secretion apparatus protein [Escherichia coli O157:H7 EDL933] gi|15832987|ref|NP_311760.1| EivG [Escherichia coli O157:H7 str. Sakai] gi|168747661|ref|ZP_02772683.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4113] gi|168753799|ref|ZP_02778806.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4401] gi|168759989|ref|ZP_02784996.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4501] gi|168766854|ref|ZP_02791861.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4486] gi|168775738|ref|ZP_02800745.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4196] gi|168778875|ref|ZP_02803882.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4076] gi|168785707|ref|ZP_02810714.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC869] gi|168799994|ref|ZP_02825001.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC508] gi|195936479|ref|ZP_03081861.1| EivG [Escherichia coli O157:H7 str. EC4024] gi|208807740|ref|ZP_03250077.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4206] gi|208812874|ref|ZP_03254203.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4045] gi|208821461|ref|ZP_03261781.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4042] gi|209395847|ref|YP_002272337.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4115] gi|217327396|ref|ZP_03443479.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. TW14588] gi|254794814|ref|YP_003079651.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. TW14359] gi|261226174|ref|ZP_05940455.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256572|ref|ZP_05949105.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. FRIK966] gi|12517375|gb|AAG57989.1|AE005515_11 type III secretion apparatus protein [Escherichia coli O157:H7 str. EDL933] gi|13363205|dbj|BAB37156.1| type III secretion protein EivG [Escherichia coli O157:H7 str. Sakai] gi|187768795|gb|EDU32639.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4196] gi|188017811|gb|EDU55933.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4113] gi|189003611|gb|EDU72597.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4076] gi|189358709|gb|EDU77128.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4401] gi|189363622|gb|EDU82041.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4486] gi|189369391|gb|EDU87807.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4501] gi|189373912|gb|EDU92328.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC869] gi|189377689|gb|EDU96105.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC508] gi|208727541|gb|EDZ77142.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4206] gi|208734151|gb|EDZ82838.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4045] gi|208741584|gb|EDZ89266.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4042] gi|209157247|gb|ACI34680.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4115] gi|217319763|gb|EEC28188.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. TW14588] gi|254594214|gb|ACT73575.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. TW14359] gi|320640504|gb|EFX10043.1| type III secretion system outer membrane pore InvG [Escherichia coli O157:H7 str. G5101] gi|320645751|gb|EFX14736.1| type III secretion system outer membrane pore InvG [Escherichia coli O157:H- str. 493-89] gi|320651051|gb|EFX19491.1| type III secretion system outer membrane pore InvG [Escherichia coli O157:H- str. H 2687] Length = 567 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G A V+ + + + + +I+ L+ D + + + Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258 Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 + T ++ ++ + + +K++ L+I + L + I ++ Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L+Q+G S G + + LD F + AL + Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P + A F + K V T + YG ++ P + Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424 Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + E N D+P T +P G ++++ G +D Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520 >gi|293416115|ref|ZP_06658755.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B185] gi|291432304|gb|EFF05286.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B185] Length = 567 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G A V+ + + + + +I+ L+ D + + + Sbjct: 200 IIIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258 Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 + T ++ ++ + + +K++ L+I + L + I ++ Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L+Q+G S G + + LD F + AL + Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P + A F + K V T + YG ++ P + Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424 Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + E N D+P T +P G ++++ G +D Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520 >gi|213024121|ref|ZP_03338568.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 148 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 2/145 (1%) Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQT 334 + A Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ I Sbjct: 1 MLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQ 60 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 V V+ G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP L Sbjct: 61 NVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWL 120 Query: 395 GALFRNSRFNREETEIFIAATPFLV 419 G LFR+ E E+ + TP LV Sbjct: 121 GQLFRHDGKEDERRELVVFITPRLV 145 >gi|11991134|gb|AAG42220.1| unknown [Shewanella putrefaciens 200] Length = 258 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 7/172 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVT 308 F ++ A+ T LA P +T + Q ASF G + + ++S +V Sbjct: 8 GDFGALIQAVSSDTNSNVLATPXITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVE 67 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + GV L P + + L I+ EVS S+ R+ TTV SG + Sbjct: 68 RKEVGVKLKVVPQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIV 125 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 VL GL+ + +Q+ + + L IP+LG L + + + I P +++ Sbjct: 126 VLGGLINEXVQESVQKVLSLGDIPVLGHLSNLPPVXKTKKNLMIFIKPTIIR 177 >gi|225165932|ref|ZP_03727695.1| type II and III secretion system protein [Opitutaceae bacterium TAV2] gi|224799824|gb|EEG18290.1| type II and III secretion system protein [Opitutaceae bacterium TAV2] Length = 809 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 92/264 (34%), Gaps = 14/264 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++V IAEV G +G FAA G ++ + + Sbjct: 440 QVRIEVVIAEVSLSDEATSGIDTLGLRIENGVLTGFAASGPGGKIAGIDNGTFFQTAKEN 499 Query: 255 SFETVLHALER--ATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSV 307 + V+ L+ PT+ Q A G + T S + ++ + Sbjct: 500 ALAGVISLSTTPRKNNTNILSVPTIVTSHNQEAEVFIGEKRPIITGTTTTSDSLSTSSQI 559 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSG 365 T G+ L TP + G + ++++ +V + + ++ + P R A + + SG Sbjct: 560 TQQQIGITLTVTPLIGPNGSVQMQLEQKVEDISGFVTIDGNEQPITTDRNAKSFLSARSG 619 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL G+ + L IP +G LF + TEI P ++ + Sbjct: 620 DIVVLGGMQRTKKGNTTSR---LGPIPWIGDLFGKRSKTDQRTEILFFIRPTVLTNTQLD 676 Query: 426 DLSR--PDDHYSVEDDAKAFFFNR 447 ++ D + + R Sbjct: 677 NVEAYQQVDRAPHAAEIRKVLDTR 700 >gi|269961466|ref|ZP_06175830.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3] gi|269833843|gb|EEZ87938.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3] Length = 563 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 63/319 (19%), Positives = 119/319 (37%), Gaps = 38/319 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + + T ++++ L+I + QV Sbjct: 245 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 303 Query: 197 TLKVTIAEVRRDILKQIGFQHSITG---------------------------------SS 223 ++ I + + ++G + T SS Sbjct: 304 QIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGLYDGGGDGEGDDGGSS 363 Query: 224 SGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + + F V + + L AL++ + ++ P L + Sbjct: 364 VGIDDFLNVNLAATSPNATSLAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 423 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340 + A G + Y SS+GATSVT + L TP + R+ L + P V Sbjct: 424 KPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQV 482 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR Sbjct: 483 VKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 542 Query: 401 SRFNREETEIFIAATPFLV 419 S N ++E+ I TP +V Sbjct: 543 SYENVGKSELLIFVTPKVV 561 >gi|331654358|ref|ZP_08355358.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli M718] gi|331047740|gb|EGI19817.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli M718] Length = 567 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G A V+ + + + + +I+ L+ D + + + Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258 Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 + T ++ ++ + + +K++ L+I + L + I ++ Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L+Q+G S G + + LD F + AL + Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P + A F + K V T + YG ++ P + Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424 Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + E N D+P T +P G ++++ G +D Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520 >gi|123443735|ref|YP_001007706.1| type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090696|emb|CAL13572.1| possible type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 563 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 81/233 (34%), Gaps = 21/233 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L + I +V + + +G + G F+ + D Sbjct: 308 RSQVELSLWIIDVTQSKVDDLGVRWEA--------------GGIGVAGGSVTFNRSTLSD 353 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +F + A+ + R ++ P + A F + + S+ Y Sbjct: 354 SKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARV--EGERVASLQQVTY 411 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGT 367 G ++ P + + + + E + +P +T + + Sbjct: 412 GTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINTVARIGRDKS 471 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++ G +D +++ + IPLLS IP+LG LF+ N+++ P L+ Sbjct: 472 LLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLLD 524 >gi|301027449|ref|ZP_07190786.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 69-1] gi|300394957|gb|EFJ78495.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 69-1] Length = 567 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G A V+ + + + + +I+ L+ D + + + Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258 Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 + T ++ ++ + + +K++ L+I + L + I ++ Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L+Q+G S G + + LD F + AL + Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P + A F + K V T + YG ++ P + Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424 Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + E N D+P T +P G ++++ G +D Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520 >gi|91227284|ref|ZP_01261709.1| fimbrial assembly protein [Vibrio alginolyticus 12G01] gi|91188678|gb|EAS74967.1| fimbrial assembly protein [Vibrio alginolyticus 12G01] Length = 560 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 59/318 (18%), Positives = 118/318 (37%), Gaps = 37/318 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + + T ++++ L+I + QV Sbjct: 243 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 301 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231 ++ I + + ++G + T + + + Sbjct: 302 QIEARIVTINEGNMDELGIRWGFTSINGSNTVGGSIENNLATIGLYNGEGGDDGGDGDGV 361 Query: 232 --------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + F V + + L AL++ + ++ P L + + Sbjct: 362 GIDDFLNVNLAATSPNATSLAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKK 421 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VI 341 A G + Y SS+GAT+VT + L TP + R+ L + P V+ Sbjct: 422 PAYIEQGTEIPYLES-SSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVV 480 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S Sbjct: 481 KTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRS 540 Query: 402 RFNREETEIFIAATPFLV 419 N ++E+ I TP +V Sbjct: 541 YENVGKSELLIFVTPKVV 558 >gi|307546346|ref|YP_003898825.1| type IV pilus assembly protein PilQ [Halomonas elongata DSM 2581] gi|307218370|emb|CBV43640.1| K02666 type IV pilus assembly protein PilQ [Halomonas elongata DSM 2581] Length = 445 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 112/286 (39%), Gaps = 31/286 (10%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 + R + T ++ ++++ L++A QV ++ I R + +++G Sbjct: 164 ERGRVAVDARTNTLLVQDTAERVAAIRRMLERLDVAVR-QVRIEARIVIARDSVARELGV 222 Query: 216 QHSITGSSSGPSKSFAADFG---------------------GKFVSEGGDFSVKGVLDRF 254 G S + + G S F + Sbjct: 223 SW-------GLSANEGSTPSGLNAAGASSGVAETGGLAVDLGSARSPATTFGFGYLSGDV 275 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + L ALE R +++P + + ++A G + Y+ +SS GAT+V + + Sbjct: 276 LLDLELRALESEGKSRIISQPRVITANQRTALIKQGTEIPYQEATSS-GATNVEFKEAVL 334 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L TP + RI + + ++ V G P+ + T V + G T+VL G+L Sbjct: 335 SLEVTPQITPDDRIIMELVIN-NDTVAQETFGGAPAIDTNQIATQVLVDDGDTVVLGGIL 393 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + PLL +P+LG LFR + + ++ E+ + TP ++ Sbjct: 394 TTEQVRQLFKTPLLGDLPLLGHLFRYTENSSDQVELLVFITPRILD 439 >gi|300697476|ref|YP_003748137.1| type III secretion protein [Ralstonia solanacearum CFBP2957] gi|299074200|emb|CBJ53745.1| Type III secretion protein [Ralstonia solanacearum CFBP2957] Length = 589 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 85/245 (34%), Gaps = 23/245 (9%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241 + +I ++ L+Q+G + S A+ Sbjct: 347 ISASIIDITETALEQLGVDWRLHNSRFDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 406 Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG S + AL++ R A P + + A + Sbjct: 407 TPAGGVLSAVIGGGSRYLMARISALQQTNQARITASPKVATLDNTEAVMDNRQNFYVPVA 466 Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356 + + GV L P V+ G + +R+ + + I G++P + Sbjct: 467 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPVTSQSEI 524 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT + G ++++AG D + + +P LSKIP++GALFR + + + TP Sbjct: 525 DTQALINEGESLLIAGYSVDQQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVTP 584 Query: 417 FLVKP 421 ++ P Sbjct: 585 RVITP 589 >gi|327251623|gb|EGE63309.1| hypothetical protein ECSTEC7V_3473 [Escherichia coli STEC_7v] Length = 505 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 67/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 93 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 137 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G A V+ + + + + +I+ L+ D + + + Sbjct: 138 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 196 Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 + T ++ ++ + + +K++ L+I + L + I ++ Sbjct: 197 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 255 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L+Q+G S G + + LD F + AL + Sbjct: 256 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 304 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P + A F + K V T + YG ++ P S Sbjct: 305 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFASRN 362 Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + E N D+P T +P G ++++ G +D Sbjct: 363 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 422 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 423 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 458 >gi|254229802|ref|ZP_04923209.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25] gi|262393099|ref|YP_003284953.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25] gi|151937701|gb|EDN56552.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25] gi|262336693|gb|ACY50488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25] Length = 582 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 118/319 (36%), Gaps = 38/319 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + + T ++++ L+I + QV Sbjct: 264 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 322 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231 ++ I + + ++G + T + + + Sbjct: 323 QIEARIVTINEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYNGGGEGEDGGDGDG 382 Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + F V + + L AL++ + ++ P L + Sbjct: 383 VGIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 442 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340 + A G + Y SS+GAT+VT + L TP + R+ L + P V Sbjct: 443 KPAYIEQGTEIPYLES-SSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQV 501 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR Sbjct: 502 VKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 561 Query: 401 SRFNREETEIFIAATPFLV 419 S N ++E+ I TP +V Sbjct: 562 SYENVGKSELLIFVTPKVV 580 >gi|167567127|ref|ZP_02360043.1| type III secretion system EscC protein [Burkholderia oklahomensis EO147] Length = 482 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 11/229 (4%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 V + V I ++ + L +G S + G S SF + S + Sbjct: 254 RKPKLVEISVAIIDINAEDLGALGVDWSASARIGGGSVSFNSGGQPDAGSFSTVIA---- 309 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + SF L AL++ + R L+ P++ + A K S+ + + Sbjct: 310 -NTGSFMVQLSALQQNSKARILSRPSIVTLDNMQAVLDRNITFYTKV--SAERVAKLESI 366 Query: 311 DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGG 366 G +L TP ++ GR + + V + +P + T L G Sbjct: 367 STGSLLRVTPRIIGDAGRQEVMLTLVVQDGRQTSPLSQQEPLPQTLSSEIATHSLLKEGE 426 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++L G ++D++ + + IPLL IP LG LF+ +R ++ T Sbjct: 427 ALLLGGFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLIK 475 >gi|320667142|gb|EFX34105.1| type III secretion system outer membrane pore InvG [Escherichia coli O157:H7 str. LSU-61] Length = 505 Score = 134 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 93 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 137 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G A V+ + + + + +I+ L+ D + + + Sbjct: 138 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 196 Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 + T ++ ++ + + +K++ L+I + L + I ++ Sbjct: 197 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 255 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L+Q+G S G + + LD F + AL + Sbjct: 256 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 304 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P + A F + K V T + YG ++ P + Sbjct: 305 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 362 Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + E N D+P T +P G ++++ G +D Sbjct: 363 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 422 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 423 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 458 >gi|187919918|ref|YP_001888949.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia phytofirmans PsJN] gi|187718356|gb|ACD19579.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia phytofirmans PsJN] Length = 637 Score = 134 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 69/435 (15%), Positives = 136/435 (31%), Gaps = 32/435 (7%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ--VPVDVQDVL 70 + L S + ++LP AV++ + + + V V V Sbjct: 141 AGLLSSLGLADSRLPVRYSDTTAVVSGPSGFVDAVSSAVAEAQRQTTITPSVDETVIRVF 200 Query: 71 VSDPTKA-DVVVHSPRTMYLFGKNVGQANVI----------LIGHDGKQMLNLDILIERD 119 +A D+ S + G A+++ + + ER Sbjct: 201 PLQYAQAQDITYTSGNQRQVV---PGVASLLRKLMADVPVSVPDRENATRSRNQARAERG 257 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 +LR + + ++ E D ++ V + + + S S Sbjct: 258 GPPPLPSLR-GLGLAGLQQEPELDPLLPVAEVMRPAAAPIQRNIVADARTNSVVIYDVPS 316 Query: 180 SSKKVMNLLNIAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + + + Q V + + ++ D +G + Sbjct: 317 MMPSYARTIAMLDKQQDLVEITAVVIDITSDAASDLGIHWGGATRGGAGGYAVMNSSPTV 376 Query: 238 FVS------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 S G + + +H LE++ R L+ P + ++ A +S Sbjct: 377 LASSLIPALAGLNLATMIGSSANYLFAKIHLLEQSGKARILSRPQVLTLNNSEAILSSRN 436 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG----RIGLRIQTEVSEPVIGVNAGD 347 + + D G+ L TPTV S I L +Q + ++ Sbjct: 437 SLYVRVA--GNQDVDLYNVDTGLTLKVTPTVESGSDSARNILLSVQIDDGAFDSSLSVDG 494 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P T + G +++L G + Q + +L +P +GALFR+++ E Sbjct: 495 IPKVNNHSIVTQAVVADGESLLLGGYEYERSQTASSQVHVLGHLPYVGALFRDTQTQVER 554 Query: 408 TEIFIAATPFLVKPV 422 E I TP VKP+ Sbjct: 555 LERLILITPR-VKPM 568 >gi|167574392|ref|ZP_02367266.1| type III secretion system EscC protein [Burkholderia oklahomensis C6786] Length = 487 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 11/229 (4%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 V + V I ++ + L +G S + G S SF + S + Sbjct: 259 RKPKLVEISVAIIDINAEDLGALGVDWSASARIGGGSVSFNSGGQPDAGSFSTVIA---- 314 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + SF L AL++ + R L+ P++ + A K S+ + + Sbjct: 315 -NTGSFMVQLSALQQNSKARILSRPSIVTLDNMQAVLDRNITFYTKV--SAERVAKLESI 371 Query: 311 DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGG 366 G +L TP ++ GR + + V + +P + T L G Sbjct: 372 STGSLLRVTPRIIGDAGRQEVMLTLVVQDGRQTSPLSQQEPLPQTLSSEIATHSLLKEGE 431 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++L G ++D++ + + IPLL IP LG LF+ +R ++ T Sbjct: 432 ALLLGGFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLIK 480 >gi|299069241|emb|CBJ40501.1| Type III secretion protein [Ralstonia solanacearum CMR15] Length = 590 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 23/245 (9%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241 + +I ++ + L+Q+G + S + Sbjct: 348 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 407 Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG S + AL++ R A P + + A + Sbjct: 408 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 467 Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356 + + GV L P V+ G + +R+ + + I G++P + Sbjct: 468 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPITSQSEI 525 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT + G ++++AG + + + +P LSKIP++GALFR + + + TP Sbjct: 526 DTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTP 585 Query: 417 FLVKP 421 ++ P Sbjct: 586 RVITP 590 >gi|186976189|gb|ACD01071.1| EivG [Escherichia coli O157:H7 str. EC10] Length = 567 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G A V+ + + + + +I+ L+ D + + + Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258 Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206 + T ++ ++ + + +K++ L+I + L + I ++ Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L+Q+G S G + + LD F + AL + Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +A P + A F + K V T + YG ++ P + Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424 Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + E N D+P T +P G ++++ G +D Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTFISTIARVPQGKSLLIGGYTRDTNTYESRK 484 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520 >gi|3228547|gb|AAC34756.1| HrcC [Pseudomonas syringae pv. tomato] Length = 700 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 15/242 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L++ + + + I ++ + L ++ + AA G + + Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDPNELAELSSRLEFQ--------CPAASEVGANLFD 357 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 GG S + + F LHALE + +A P++ + Q A S Sbjct: 358 GGTSSTLFLQNASKFSAELHALEGNGSASVIANPSILTLENQPAVIDLSRTEYLTPT--S 415 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 A + G L P L ++ + + E + + PS R T Sbjct: 416 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 475 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417 + G++V+ G + IPLL IP +G LF++ + E TP Sbjct: 476 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 535 Query: 418 LV 419 L+ Sbjct: 536 LI 537 >gi|156972409|ref|YP_001443316.1| type IV pilus secretin PilQ [Vibrio harveyi ATCC BAA-1116] gi|156524003|gb|ABU69089.1| hypothetical protein VIBHAR_00029 [Vibrio harveyi ATCC BAA-1116] Length = 583 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 61/319 (19%), Positives = 118/319 (36%), Gaps = 38/319 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + D T ++++ L+I + QV Sbjct: 265 KASDIAEMINGEGNISMLSDRGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 323 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231 ++ I + + ++G + T + + + Sbjct: 324 QIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGLYDGGGDGEGDDGGSS 383 Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + F V + + L AL++ + ++ P L + Sbjct: 384 VGIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 443 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340 + A G + Y SS+GATSVT + L TP + R+ L + P V Sbjct: 444 KPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQV 502 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G+ + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR Sbjct: 503 VKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 562 Query: 401 SRFNREETEIFIAATPFLV 419 S N ++E+ I TP +V Sbjct: 563 SYENVGKSELLIFVTPKVV 581 >gi|331664433|ref|ZP_08365339.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli TA143] gi|331058364|gb|EGI30345.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli TA143] Length = 567 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 64/399 (16%), Positives = 125/399 (31%), Gaps = 45/399 (11%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF-----IADSNIRVEMVSDTV 145 G A V+ + + + + +I+ L+ + ++ + + Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIA 203 + ++ ++ + + +K++ L+I + L + I Sbjct: 259 IATAGAP---ETDNIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWII 314 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 ++ + L+Q+G S G + + LD F + AL Sbjct: 315 DIDKTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQAL 363 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + +A P + A F + K V T + YG ++ P Sbjct: 364 AQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFA 421 Query: 324 SPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + +I L + E N D+P T +P G ++++ G +D Sbjct: 422 ARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYE 481 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 482 SRKIPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520 >gi|262394223|ref|YP_003286077.1| putative maturation protein [Vibrio sp. Ex25] gi|262337817|gb|ACY51612.1| putative maturation protein [Vibrio sp. Ex25] Length = 353 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 14/233 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + QV ++ I E +++G + S A F + + Sbjct: 131 RPQKQVFIEAVITETELGDSQEVGVNMDLALSE--------AGFVSQPTAIKKAVDNLLF 182 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATS 306 + F ++ A+ + + L+ P + + + T G + T Sbjct: 183 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 242 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + D GV L P V+ + + S+ V + R T V++ Sbjct: 243 IERKDVGVSLEVVPHVIGDHVVL--QIMQKSDSVTDSSIASDIITNTRTLQTVVKVKDRQ 300 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 TI L GL+ + + G+P+L +P+LGALFR+ + N + E+ + ++ Sbjct: 301 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 353 >gi|299138919|ref|ZP_07032096.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] gi|298599073|gb|EFI55234.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] Length = 901 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 71/409 (17%), Positives = 145/409 (35%), Gaps = 39/409 (9%) Query: 39 ISDVEIGKGKKISIGLNKVIILQV-PVDVQDVLVSDP-TKADV------VVHSPRTMYLF 90 IGK +++ + + + PVD+ V + D + T+++ Sbjct: 277 AIYQAIGKAAGLNVIFDPDYVSKSIPVDLTSVSLYDALRIVGTLSGTFWKPVTSNTIFV- 335 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHG 149 +N L + ++ + D + + LR + I + + ++L Sbjct: 336 AQNNRTKRTDLDDLAVQTFYLTNVSQQNDANEILVALRNLLDPALKIYLVASQNALILRA 395 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + +++ + + ++ + S++ L I + Sbjct: 396 TPSELILAEKLINDLDRTRAEVVVDVAVLEVSRQKERDLGITLPT-----------SFGL 444 Query: 210 LKQI-GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL-----HAL 263 Q + SS+G + + + S + G L+ +F L +AL Sbjct: 445 TPQFSNQNVTNNNSSTGTNTNTGSGAPTTTTSSSLTLNSLGNLNATNFAVSLSGGTVNAL 504 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----------ATSVTTHDYG 313 R L P + A GQ ++ G + T S ++G T T D G Sbjct: 505 LSDLDTRILQNPRIRATDGQHSTLKIGEKIPVATGSYNSGVSTGLANIGVQTQFTYLDVG 564 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 V + TPTV + L+++ E+S + ++ P R A+ ++L G +LA Sbjct: 565 VNIDITPTVHYDHEVSLKMKVEISASNGNVTISGVTEPIITQRVAEQVIQLKDGEPSILA 624 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GLL+ + + G P L ++P F + ++ EI P +V+ Sbjct: 625 GLLQQEDTKTINGTPGLGELPFFKYFFSSQDKVQQSDEIVFLIIPHIVR 673 >gi|219566964|dbj|BAH04995.1| Hrp conserved transmembrane protein [Ralstonia solanacearum] Length = 568 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 23/245 (9%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241 + +I ++ + L+Q+G + S + Sbjct: 326 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 385 Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG S + AL++ R A P + + A + Sbjct: 386 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 445 Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356 + + GV L P V+ G + +R+ + + I G++P + Sbjct: 446 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPITSQSEI 503 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT + G ++++AG + + + +P LSKIP++GALFR + + + TP Sbjct: 504 DTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTP 563 Query: 417 FLVKP 421 ++ P Sbjct: 564 RVITP 568 >gi|17549095|ref|NP_522435.1| Hrp conserved HRCC transmembrane protein [Ralstonia solanacearum GMI1000] gi|2833448|sp|Q52498|HRPA_RALSO RecName: Full=Hypersensitivity response secretion protein hrpA; Flags: Precursor gi|6066715|emb|CAB58261.1| HrpA [Ralstonia solanacearum] gi|17431346|emb|CAD18025.1| hrp conserved hrcc transmembrane protein [Ralstonia solanacearum GMI1000] gi|1097294|prf||2113360W hrpA gene Length = 568 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 23/245 (9%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241 + +I ++ + L+Q+G + S + Sbjct: 326 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 385 Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG S + AL++ R A P + + A + Sbjct: 386 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 445 Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356 + + GV L P V+ G + +R+ + + I G++P + Sbjct: 446 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPITSQSEI 503 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT + G ++++AG + + + +P LSKIP++GALFR + + + TP Sbjct: 504 DTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTP 563 Query: 417 FLVKP 421 ++ P Sbjct: 564 RVITP 568 >gi|194292010|ref|YP_002007917.1| sctc: non flagellar t3S system conserved protein. gsp d family [Cupriavidus taiwanensis LMG 19424] gi|193225914|emb|CAQ71861.1| SctC: non flagellar T3S system conserved protein. GSP D family [Cupriavidus taiwanensis LMG 19424] Length = 580 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 91/256 (35%), Gaps = 20/256 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKSF 230 +++ L++ V ++VTI ++ + L +G + G++ + Sbjct: 325 RLIESLDVK-PRLVEIEVTIMDISQADLDSLGVDWRLHTPHVDLQLGGGNGNAGLSFGNL 383 Query: 231 AADFGGKFVSEGGDFSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASF 287 A + G + G G + T + AL +A P + + A+ Sbjct: 384 ANEAGTTAATIGSGLQFTGAIGSDVTRYLLTRVKALAERGQANFVARPKVLTLDNTEAAL 443 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--GRIGLRIQTEVSEPVIGVNA 345 + + + + G + TP V+ R + + G Sbjct: 444 ENLQEFYVRVDGFQDAG--LFNVTAGTAVRVTPLVVDEQQNRAVMLTIDIADGNLSGETV 501 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P R R T + G ++++AG ++ G+PLL +PI+G LF+ + Sbjct: 502 DRIPVVRRRSITTQAMVEEGKSLLIAGYTTEEKINASSGVPLLQDVPIIGNLFKYQEKRQ 561 Query: 406 EETEIFIAATPFLVKP 421 E F TP LV P Sbjct: 562 NNMERFYLLTPRLVIP 577 >gi|171319944|ref|ZP_02909020.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] gi|171094800|gb|EDT39838.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] Length = 679 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 61/348 (17%), Positives = 114/348 (32%), Gaps = 62/348 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231 + ++N L+ V + VTI ++ D L +G + G + + Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS-----------------FETVLHALERATAIRTLAE 274 G ++ G S G F T ++AL + + ++ Sbjct: 385 NGAGNPPLTFGIGTSETGQTGAFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--------- 325 P + A+ A + Q + +S+ + G + TP ++ Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVS 502 Query: 326 ---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + + I + V G ++P + R T + G ++++AG D+++ K Sbjct: 503 GNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNK 562 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----------PVAMRDLSRPDD 432 G+P LS IP++G LF+ + + E F TP +V PV R D Sbjct: 563 SGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTASMYAPDGSPVNPGADGRADP 622 Query: 433 H----YSVEDDAKAF------FFNRVNKIYGPKEASEVEGQNYKGAIG 470 + Y D+ A SE + G Sbjct: 623 NGASMYRPPDNDIAVPLTPAPLPGTKFGPPALPPPSESASRPVATTAG 670 >gi|21230696|ref|NP_636613.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769309|ref|YP_244071.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992461|ref|YP_001904471.1| HrcC protein [Xanthomonas campestris pv. campestris str. B100] gi|21112285|gb|AAM40537.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574641|gb|AAY50051.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734221|emb|CAP52429.1| HrcC protein [Xanthomonas campestris pv. campestris] Length = 605 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------------- 243 + TI E+R L+ +G + Sbjct: 368 QIDATIIEIRDGALQDLGVDWRFHSRRVDVQTGDGRGGQLGYDGSLSGAAAAGAAAPLGG 427 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE+ + ++ P + + A Q + ++ Sbjct: 428 TLTAVLGDAGRYLMTRVSALEQTNKAKIVSTPQVATLDNVEAVMDHKQQAFVRVSGYASA 487 Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + GV L P+V+ G++ L ++ E + +P + T Sbjct: 488 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GANTVDGIPVITSSEITTQA 544 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D Q +P LS+IP++G LF++ + + + TP +V Sbjct: 545 FVNEGQSLLIAGYASDTDQTDLNNVPGLSRIPLVGNLFKHRQQSGSRLQRLFLLTPHIVS 604 Query: 421 P 421 P Sbjct: 605 P 605 >gi|291280567|ref|YP_003497401.1| hypothetical protein DEFDS_P017 [Deferribacter desulfuricans SSM1] gi|290755269|dbj|BAI81645.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 531 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 105/269 (39%), Gaps = 31/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFG 235 L +V L V + EV D K+ G + G+ G +F + Sbjct: 260 DNYFKKLKERLSKEVFLDVKVLEVTYDSNKEQGIDWNALALGKYNGNKLGIRTNFVSGSP 319 Query: 236 GKFVSEGGDFS------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 F ++ FS + + + ++ + ++P ++GQ A Sbjct: 320 DVFDTQPPGFSSLSLPVLTVSDADDVIKFIAGFVKGKGKLTVKSQPRQLVLNGQPAVIPV 379 Query: 290 GGQHLYKTVSSS-------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 G Y + SS + + T GVVL F P V I L + + Sbjct: 380 GQIIKYISNISSDSGSDSSLTGGDLSYSVETGTLQTGVVLQFLPKVTDDNNIVLNLGVTI 439 Query: 337 S------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + E + +P VR +TV++ SG TIV+ G+L D+ +++ +PL+ Sbjct: 440 NRLDKMDEKSLNGIILQLPQTSVRAVSSTVKMKSGQTIVIGGILSDNTNEIENKVPLVGD 499 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IPILG LF+ + + +TE+ + T +V Sbjct: 500 IPILGNLFKYKKKEKTKTEMIVIITAHVV 528 >gi|223936189|ref|ZP_03628102.1| type II and III secretion system protein [bacterium Ellin514] gi|223895051|gb|EEF61499.1| type II and III secretion system protein [bacterium Ellin514] Length = 906 Score = 133 bits (334), Expect = 8e-29, Method: Composition-based stats. Identities = 64/336 (19%), Positives = 113/336 (33%), Gaps = 97/336 (28%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------- 221 +K + LN+A Q+ +K E+ ++ K +GF + Sbjct: 546 EKAIQTLNVA-PPQINIKAKFIEITQNDSKALGFDWFLGNFLLGGGKLGAQGGTAPSFAG 604 Query: 222 --SSSGPSKSFAADF-------------------------------GGKFVSEGGDFSVK 248 S++ PS F + +V Sbjct: 605 APSTANPSGVFPGSPATIDPVTGLGSLPTTIPPSTSDQLITGGLRNTAGTATVPTIATVT 664 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------- 300 G+L F + ALE+ + L P +T SG+ A + T Sbjct: 665 GLLTDPQFRVAIRALEQRDGVDLLTAPDVTTESGRQAQIQAIDIQTIVTGQQFGQGANGA 724 Query: 301 ---------------STGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP----- 339 +T + T +G VL P V + + + I V+E Sbjct: 725 NAASGVGSTVIQNTATTSQYTTQTLPFGPVLDVIPYVSADEFSVQMTIIPTVTEFVQYDP 784 Query: 340 --------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 V A +P +R+R+ T+V + T+VL GL+ D + ++K+ + Sbjct: 785 PGPFVPQASAIAGGTSVVGALPLPHFRMRQVTTSVTVWDSQTVVLGGLITDSVTKIKDQV 844 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 PLL +P +G LFR+ + + + I TP ++ P Sbjct: 845 PLLGDMPFVGRLFRSESSQKTKKNLVIFVTPTIINP 880 >gi|255619353|ref|XP_002540016.1| General secretion pathway protein D precursor, putative [Ricinus communis] gi|223500090|gb|EEF22367.1| General secretion pathway protein D precursor, putative [Ricinus communis] Length = 304 Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 88/277 (31%), Gaps = 40/277 (14%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + T + + V++ L++ QV ++ + EV + G Q Sbjct: 28 IQADASTNSLIITAPDAVYRNLRAVIDQLDVR-RAQVYIEALVVEVTSTDASEFGVQWVG 86 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD--------------------------------FSV 247 ++ S + Sbjct: 87 LTGNNNSSYRVGGLQSFSLGGSNNNIVNLALAAATGISGSGSTTTGSSIPSPTGLSIGIF 146 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---- 303 K V + HALE L+ P + + + A+ G T S +TG Sbjct: 147 KQVNGELGLGAIAHALESTGHANILSTPNMITLDNELATIKVGQNIPIITGSFTTGASGA 206 Query: 304 ---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 +V D G++L P + G I L I E S V++ VR ++ V Sbjct: 207 SNPFQTVDRKDVGLLLKVRPQISEGGTIKLAIYHENSGIDNSVSSASGIVTTVRAIESNV 266 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 +G +VL GL+ DD + E + L IPILG L Sbjct: 267 LADNGQIVVLGGLISDDESENNEKVRGLGDIPILGNL 303 >gi|312963506|ref|ZP_07777988.1| general secretion pathway protein D [Pseudomonas fluorescens WH6] gi|311282312|gb|EFQ60911.1| general secretion pathway protein D [Pseudomonas fluorescens WH6] Length = 641 Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 64/360 (17%), Positives = 137/360 (38%), Gaps = 47/360 (13%) Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI----ERDIAHLEMTLRRFIA 132 D + + T+ ++ + ++ L + D + +++ + Sbjct: 240 LDKKILNANTILVYPRRP---------DKEREYRELAVRTFYLSHSDPKVVGAEIKQVLK 290 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 + V+ + V++ S+ +K++ ++IA Sbjct: 291 PKEVLVDERLNAVIVR------------------------DGLDTLSAVEKLVEAIDIAQ 326 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGV 250 + VT+ + + EV + +G Q+ G S G + A G +S G + Sbjct: 327 SE-VTIDIQVLEVSLNDELNLGIQYPESVGLSVGNLANVPAGLAGIPLSALRGINGDNIL 385 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--TSVT 308 LD S ++ L+R+ TLA P + + + A+ G + T +++ +SVT Sbjct: 386 LDAGSTSARINMLQRSGNTVTLANPRVRVRNREEAAVNIGDKVPMVTTTTANDITTSSVT 445 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPS 364 D G+ + P + + L + E+S N R T + + Sbjct: 446 YQDVGLQITVKPNISLSDEVNLELNVEMSHITKRIPASENVQATFELGSRSTKTLLTARN 505 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVA 423 T +++GL++ G+P LS+IP +G LF ++ +++TEI + TP + + + Sbjct: 506 NETQIVSGLIRTADVDEGAGLPWLSQIPWIGKKLFGTNQSTQQKTEIILLLTPRIERNLD 565 >gi|146298381|ref|YP_001192972.1| type II and III secretion system protein [Flavobacterium johnsoniae UW101] gi|146152799|gb|ABQ03653.1| GspD-like type II secretion system secretin protein [Flavobacterium johnsoniae UW101] Length = 634 Score = 132 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 57/306 (18%), Positives = 111/306 (36%), Gaps = 21/306 (6%) Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 I++E S +VL + + + E E + ++ K + ++ Sbjct: 329 EVIQLENRSIELVLPSLPKVFSEKLEIKEFVELNGLVASGSKSILEELKLYIKQIDKIVP 388 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 V ++V IA+ + Q G + + + + V+ S+ + Sbjct: 389 -MVQIEVIIAQYNKSHDVQTGMKAGLDKINKQVTGGTVFPTTDMTVNSTSVNSLIDAFNG 447 Query: 254 FS----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F F L LE + ++ + P + ISG A + G Y S+ Sbjct: 448 FGIFKLGKVTEAFYLNLKLLENNSIVKVESTPKIATISGHEAKLSIGETSYYFEQSNRLI 507 Query: 304 ATSV----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 +++ + D + L P V + L I E S + P Sbjct: 508 NSNIGNDILNSGTWKSTDANLSLSIKPYVSIDENVTLTIVVEKSSFLGRAGETAPPGKAT 567 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 +K ++ V + +G I+L GL + + G PLLS+IPI+ F + + + +++ I Sbjct: 568 QKFESLVRVKNGEMILLGGLDELKKEDSGSGTPLLSRIPIIKWFFSSRKKGKNNSKLHIF 627 Query: 414 ATPFLV 419 P +V Sbjct: 628 IKPTVV 633 >gi|322435311|ref|YP_004217523.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] gi|321163038|gb|ADW68743.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] Length = 819 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 56/313 (17%), Positives = 107/313 (34%), Gaps = 18/313 (5%) Query: 121 AHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + LR + + + + +V+ G + +Q+ + + + + Sbjct: 278 NEILTGLRLLLDPTVKLYLVPSQNAIVMRGTTDELLLAQKLINDFDRARPEVVVDVAVLE 337 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S+ + L I + L ++ S T +SS + S ++ Sbjct: 338 VSRDKVRTLGITLPQSIGLTPQLSNANSTSTTSSTTTTSTTTTSSTTTSSTSSLTLNNLA 397 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + L+AL R L P + A GQ A+ G + T S Sbjct: 398 HLNATNFAVSITGGT-----LNALLTDGDTRILQNPRIRATDGQRATLKIGSKIPIATGS 452 Query: 300 SSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347 + G T T D GV + TPTV + ++++ EVS V + Sbjct: 453 YNAGVSTGVASIGVQTQFTYIDVGVNIDITPTVHYDREVSMKMKIEVSSQSNTVVISGVS 512 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P R ++ +++ G +LAG+L + G P L ++P F ++ Sbjct: 513 EPIISQRISEQVIQVQDGEPSILAGILTHQDSKTVSGTPFLGELPFFKYFFSTQSKETQQ 572 Query: 408 TEIFIAATPFLVK 420 E+ P +V+ Sbjct: 573 DELVFLIIPHVVR 585 >gi|15088592|gb|AAK84103.1|AF369954_1 YsaC [Yersinia enterocolitica] Length = 526 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 61/421 (14%), Positives = 135/421 (32%), Gaps = 64/421 (15%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISI----GLNKVIILQVPVDVQDVL 70 LF S P + A I ++ G ++++ LN+ I+ Q + Sbjct: 153 LLFVSGPPLYVELISAAAAYLDERIKQEDLASGGEVAVIPVKTLNQSPIVLYNQRGQSIT 212 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQA--NVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 + P + + G N G + + +G+ + + + L+ Sbjct: 213 I--PG-----MLTALNALFQGNN-GTTESTLTIQPKEGEPTIEAGFPAPPSVNGGDSALK 264 Query: 129 RFIADSN-----IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + S+++V+ G + + + +L T + Sbjct: 265 LAAGAKTSSPFSLVAYPDSNSLVVKG---SAEQIRYVRQLVHTLDNS------------- 308 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 QV L + I +V + + +G + A G Sbjct: 309 ---------RSQVELSLWIIDVTQSKVDDLGVRWE-------------AGGIGVAGGSSV 346 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F+ + D +F + A+ + R ++ P + A F + + Sbjct: 347 TFNRSTLSDSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARV--EGER 404 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADT 358 S+ YG ++ P + + + + E + +P +T Sbjct: 405 VASLQQVTYGTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINT 464 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + ++++ G +D +++ + IPLLS IP+LG LF+ N+++ P L Sbjct: 465 VARIGRDKSLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRL 524 Query: 419 V 419 + Sbjct: 525 L 525 >gi|225874512|ref|YP_002755971.1| type II/III secretion system protein [Acidobacterium capsulatum ATCC 51196] gi|225792554|gb|ACO32644.1| type II/III secretion system protein [Acidobacterium capsulatum ATCC 51196] Length = 786 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 76/397 (19%), Positives = 137/397 (34%), Gaps = 55/397 (13%) Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V +P T+++ + + L + ++ + D ++ LR ++I Sbjct: 218 YRVITPNTIFV-AADTRAKRMQLEDQAVQTFYLHNVTQQSDFTDIQTALRNVFQTAHIFG 276 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + +V+ + L+ + Q + + +V + Sbjct: 277 VASQNAIVMRATPDELL-------LARQLIGQLDQP------------------KPEVLV 311 Query: 199 KVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 V + EV R+ ++IG Q S + SSS S S ++ S + Sbjct: 312 DVAVLEVSRNFERKIGLQLPQTATVNLQASTSSSSSSSSSSSSSSSSSSSTSSSLTLNNL 371 Query: 249 GVLDRFSFETVL-----HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 L+ +F + L T + + EP + A GQ A G + T S TG Sbjct: 372 AHLNSNNFAVTIGQAEADLLLTNTDTQIIQEPRIRASDGQDAQLKIGEKLPVATGSYQTG 431 Query: 304 ----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSY 351 T D GV + PTVLS + ++++ +VS N D P Sbjct: 432 AATAIVSSLVNTQFQYLDVGVNIDVKPTVLSDRDVSMKVKIDVSSTNGTENLGGVDEPII 491 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R AD T+ L +G ++ G+ + G P LS++P+L +F + ++ Sbjct: 492 TQRVADETIRLKNGEANLIGGIRQVQTSNSLSGTPGLSELPLLKYIFGVHDHTVSKDDLV 551 Query: 412 IAATPFLVKP--VAMRDLSRPDDHYSVEDDAKAFFFN 446 I P +V DL D S + Sbjct: 552 ILLIPHVVSAPTTNPNDLQPIDTGTSDAFQVRTVSQG 588 >gi|300936194|ref|ZP_07151130.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 21-1] gi|300458651|gb|EFK22144.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 21-1] Length = 567 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 65/399 (16%), Positives = 126/399 (31%), Gaps = 45/399 (11%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 V+N + + I IG NKV I+ + + RT L G+ Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199 Query: 94 ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF-----IADSNIRVEMVSDTV 145 G A V+ + + + + +I+ L+ + ++ + + Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIA 203 + V ++ ++ + + +K++ L+I + L + I Sbjct: 259 ISTAGVP---ETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWII 314 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 ++ + L+Q+G S G + + LD F + AL Sbjct: 315 DIDKTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQAL 363 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + +A P + A F + K V T + YG ++ P Sbjct: 364 AQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFA 421 Query: 324 SPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + +I L + E N D+P T +P G ++++ G +D Sbjct: 422 ARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYE 481 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+L IP +G LF N P + Sbjct: 482 SRKIPILGSIPFIGILFGYEGTNANNIVRVFLIEPREID 520 >gi|149200050|ref|ZP_01877075.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa HTCC2155] gi|149136808|gb|EDM25236.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa HTCC2155] Length = 864 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 66/371 (17%), Positives = 116/371 (31%), Gaps = 112/371 (30%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--- 228 + +++ L E+Q+ ++ E+ +D + ++ F+ SI G Sbjct: 491 KNTPAEHGKIDRIIKELA-PAENQIIIESKFYEINQDDIDELAFEWSIARIEDGSGFTDP 549 Query: 229 -----------------------------SFAADFGGKFVSEGG---------------- 243 F+ D G S GG Sbjct: 550 NAGYIGRDPSYVGGVNGDPNGSLNDFLSDGFSLDKSGDLTSAGGDGLESAVRSLGSVLGA 609 Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F +L +F T++ A+++ + L P +T +G +A + + Sbjct: 610 PGLSQGTFKFASILGDTTFNTLVSAIQQRSGEDVLNAPKVTTQNGHTAKIRVVQERYFPE 669 Query: 298 VSSS-------------------TGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVS 337 + D G VL TP + R I L+++ EV Sbjct: 670 EWEEPEVEQNSQGDGGSASTVTPSKPVFGEPRDIGAVLTVTPQIDPDQRVIELQLKPEVI 729 Query: 338 EPVIGVNAGDM--------------------------------PSYRVRKADTTVELPSG 365 E V N ++ P + R DTTV + G Sbjct: 730 EFVEYDNTFNVDMLVGQEVTFIPIIGNPFTVTVYTAFEQKFSMPIFESRTVDTTVRVWDG 789 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----P 421 T+ L G++ ++ ++ IP L IP LG F ++ + + I T L+ P Sbjct: 790 ETLALGGMISENKTTYEDKIPYLGDIPFLGRFFTSNGERSVKQNLIIFVTARLIDPSGLP 849 Query: 422 VAMRDLS-RPD 431 V+ LS PD Sbjct: 850 VSPGTLSGLPD 860 >gi|53722566|ref|YP_111551.1| Type III secretion system protein [Burkholderia pseudomallei K96243] gi|52212980|emb|CAH39018.1| Type III secretion system protein [Burkholderia pseudomallei K96243] Length = 620 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 318 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 376 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 377 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 425 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 426 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 483 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 484 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 543 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 544 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 603 >gi|254264759|ref|ZP_04955624.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] gi|254215761|gb|EET05146.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] Length = 620 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 318 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 376 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 377 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 425 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 426 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 483 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 484 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 543 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 544 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 603 >gi|134282090|ref|ZP_01768796.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] gi|134246619|gb|EBA46707.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] Length = 625 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608 >gi|126457615|ref|YP_001076120.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1106a] gi|226195991|ref|ZP_03791577.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|242310941|ref|ZP_04809958.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] gi|254186863|ref|ZP_04893379.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|126231383|gb|ABN94796.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106a] gi|157934547|gb|EDO90217.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|225931884|gb|EEH27885.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|242134180|gb|EES20583.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] Length = 625 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608 >gi|217425200|ref|ZP_03456695.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] gi|217391805|gb|EEC31832.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] Length = 624 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 322 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 380 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 381 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 429 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 430 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 487 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 488 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 547 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 548 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 607 >gi|282892150|ref|ZP_06300624.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497951|gb|EFB40296.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 852 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 112/321 (34%), Gaps = 44/321 (13%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF------- 245 + V ++V + E R + Q G TG+++ + + + + F Sbjct: 529 KKMVQIEVLLFEKRLNRDNQFGLNLLRTGNAATNTHTTSVQWNNIFPVGASVVHPENAGV 588 Query: 246 ------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----- 294 K +++ L I+ A P++ AI+ A+ + Sbjct: 589 FEYLVSRTKTASGIPAYDFAYRFLLSQDDIQINASPSVVAINQTPATIEIAEEISVSTGI 648 Query: 295 --YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG--------LRIQTEVSEPVIGVN 344 T + T S YG+ + PT+ + + ++T++ I + Sbjct: 649 FEIPTEGNVTLKDSFARARYGIKIEIIPTIHVREDMNDPEDPVDYVTLETDILFETINPS 708 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P R V +P T+++ GL + ++ KE IP L +IP +G LF ++ Sbjct: 709 VDSRPDVTRRHITNQVRIPDQQTVIIGGLRRKNLSDSKESIPYLGEIPGIGKLFSITQLT 768 Query: 405 REETEIFIAATPFLVKPVA--------MRDLSRPDD------HYSVEDDAK--AFFFNRV 448 TE+FI TP ++ A RP D ++A+ F + Sbjct: 769 DSATEMFIFITPKIITEAAEDFDRIRCEEMQRRPGDIPGFLCRLQRAEEAEKNRIFQGYL 828 Query: 449 NKIYGPKEASEVEGQNYKGAI 469 ++G ++ +G Sbjct: 829 TMLFGRPPERCIQDCIPRGEY 849 >gi|237508896|ref|ZP_04521611.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] gi|254185160|ref|ZP_04891749.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] gi|184215752|gb|EDU12733.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] gi|235001101|gb|EEP50525.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] Length = 625 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608 >gi|67639412|ref|ZP_00438272.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei GB8 horse 4] gi|124382842|ref|YP_001025856.1| type III secretion system protein BsaO [Burkholderia mallei NCTC 10229] gi|126445673|ref|YP_001077941.1| type III secretion system protein BsaO [Burkholderia mallei NCTC 10247] gi|254175971|ref|ZP_04882629.1| type III secretion system protein BsaO [Burkholderia mallei ATCC 10399] gi|254359082|ref|ZP_04975354.1| type III secretion system protein BsaO [Burkholderia mallei 2002721280] gi|126238527|gb|ABO01639.1| type III secretion system protein BsaO [Burkholderia mallei NCTC 10247] gi|148028269|gb|EDK86229.1| type III secretion system protein BsaO [Burkholderia mallei 2002721280] gi|160697013|gb|EDP86983.1| type III secretion system protein BsaO [Burkholderia mallei ATCC 10399] gi|238519949|gb|EEP83414.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei GB8 horse 4] Length = 625 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608 >gi|46447532|ref|YP_008897.1| putative protein of the general secretion pathway [Candidatus Protochlamydia amoebophila UWE25] gi|46401173|emb|CAF24622.1| putative protein of the general secretion pathway [Candidatus Protochlamydia amoebophila UWE25] Length = 829 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 79/258 (30%), Gaps = 31/258 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--------VSEGGD 244 + V ++ + E G G + + + G Sbjct: 497 KKMVQIETLLFEKILTRENTFGLNLLKIGEHIAKNTNLTGATFNNIFPVKGEFTPANAGV 556 Query: 245 FSVK-----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298 F +F+ L ++ + P++ ++ A+ T Sbjct: 557 FDFLLSRKQTSSGIPAFDLAYRFLLSQDDVQINSNPSILTMNQTPATIAVNEDISINTGI 616 Query: 299 ------SSSTGATSVTTHDYGVVLHFTPTV----------LSPGRIGLRIQTEVSEPVIG 342 +T + T YG+ + PT+ + L G Sbjct: 617 FEVETAKGTTLKDAFTRAQYGITISVKPTIHLNQHDTEDEWDFDYVTLETDITFDTIHAG 676 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 P R V++P G TI+L GL + K+ IP L ++P LG LF + Sbjct: 677 -GDRSRPDVTRRHITNQVQVPDGDTIILGGLRRKTTNDNKDSIPFLGELPGLGKLFSTNS 735 Query: 403 FNREETEIFIAATPFLVK 420 +E+FI TP +VK Sbjct: 736 LKDSSSEMFIFITPHIVK 753 >gi|254301448|ref|ZP_04968892.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|157811001|gb|EDO88171.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] Length = 625 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608 >gi|83747847|ref|ZP_00944880.1| HrcC [Ralstonia solanacearum UW551] gi|207739230|ref|YP_002257623.1| hrp protein hrcc [Ralstonia solanacearum IPO1609] gi|83725494|gb|EAP72639.1| HrcC [Ralstonia solanacearum UW551] gi|206592603|emb|CAQ59509.1| hrp conserved protein hrcc [Ralstonia solanacearum IPO1609] Length = 567 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 89/245 (36%), Gaps = 23/245 (9%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240 + +I ++ L+Q+G + S +G + + G S Sbjct: 325 ISASIIDITETALEQLGVDWRLHNSRLDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 384 Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG S + AL++ R A P + + A + Sbjct: 385 TPAGGVLSAVIGGGSRYLMARISALQQTNQARVTASPKVATLDNTEAVMDNRQNFYVPVA 444 Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356 + + GV L P V+ G + +R+ + + I G++P + Sbjct: 445 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPVTSQSEI 502 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT + G ++++AG D + + IP LSKIP++GALFR + + + TP Sbjct: 503 DTQALINEGESLLIAGYSVDQQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVTP 562 Query: 417 FLVKP 421 ++ P Sbjct: 563 RVITP 567 >gi|126442335|ref|YP_001063169.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 668] gi|126221826|gb|ABN85331.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 668] Length = 617 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 315 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 373 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 374 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 422 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 423 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 480 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 481 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 540 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 541 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 600 >gi|171060459|ref|YP_001792808.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] gi|170777904|gb|ACB36043.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] Length = 596 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 69/450 (15%), Positives = 144/450 (32%), Gaps = 95/450 (21%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV-------- 80 + + ++ + + + ++ + + ++D + + Sbjct: 71 TLQLRDVPLGLALDSLAGSTGLRLIRDRDVRTDAR---STLFLTDARVGEALEVLLLSQQ 127 Query: 81 ----VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 RT ++ + G+ + +L + A + L+ + +I Sbjct: 128 LAMRALDGRTALIYPNTPAK-----QRTYGELQVRTFVLRHTEAATMATLLKSLVKSQSI 182 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + S+T+VL ++L+E ++ + R V Sbjct: 183 VTDPRSNTLVLRDTP-------EVLQLAEQLIAINDRPSGD------------------V 217 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 ++V + EV R L ++G P+ A Sbjct: 218 VIEVQLIEVNRQRLSRLGLSW--------PTSLSIATPASATTLGALRALGGDAWLASPL 269 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---------- 306 L+ + +A P++ A + A G + T ++ S Sbjct: 270 ALGLNLQLQDIGATVIANPSVRARHKEKARLLIGDKVPVMTTQLASMGGSGASAAAPATT 329 Query: 307 ------------------------------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 V D G L P V + G + L I E+ Sbjct: 330 APVTAAEGQAGQAEQAGQAGDGGTVMFSGSVQYIDVGFKLEVEPQVHADGDVDLDIDIEL 389 Query: 337 SEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 S+ ++ +Y+ VR+A T++ L G T L GL++ + G+P LS++P++ Sbjct: 390 SQITQTLDTDSGVAYQLGVRQAQTSMRLRDGETQWLGGLIRRQERAAMSGLPGLSQLPVI 449 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424 G LF + +TE+ +A TP + +PV Sbjct: 450 GRLFGLESQDTADTELVLAVTPRIARPVPP 479 >gi|8996028|gb|AAF82327.1|AF005744_3 YsaC [Yersinia enterocolitica] Length = 525 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 60/421 (14%), Positives = 134/421 (31%), Gaps = 65/421 (15%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISI----GLNKVIILQVPVDVQDVL 70 LF S P + A I ++ G ++++ LN+ I+ Q + Sbjct: 153 LLFVSGPPLYVELISAAAAYLDERIKQEDLASGGEVAVIPVKTLNQSPIVLYNQRGQSIT 212 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQA--NVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 + P + + G N G + + +G+ + + + L+ Sbjct: 213 I--PG-----MLTALNALFQGNN-GTTESTLTIQPKEGEPTIEAGFPAPPSVNGGDSALK 264 Query: 129 RFIADSN-----IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + S+++V+ G + + + +L T + Sbjct: 265 LAAGAKTSSPFSLVAYPDSNSLVVKG---SAEQIRYVRQLVHTLDNS------------- 308 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 QV L + I +V + + +G + G Sbjct: 309 ---------RSQVELSLWIIDVTQSKVDDLGVRWEA--------------GGIGVAGGSV 345 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F+ + D +F + A+ + R ++ P + A F + + Sbjct: 346 TFNRSTLSDSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARV--EGER 403 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADT 358 S+ YG ++ P + + + + E + +P +T Sbjct: 404 VASLQQVTYGTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINT 463 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + ++++ G +D +++ + IPLLS IP+LG LF+ N+++ P L Sbjct: 464 VARIGRDKSLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRL 523 Query: 419 V 419 + Sbjct: 524 L 524 >gi|221200554|ref|ZP_03573596.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD2M] gi|221206234|ref|ZP_03579248.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD2] gi|221174246|gb|EEE06679.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD2] gi|221179895|gb|EEE12300.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD2M] Length = 678 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 43/314 (13%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSE 241 V + VTI ++ D L +G + G++ + G ++ Sbjct: 333 RPRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTF 392 Query: 242 GGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQS 284 G S G F T ++AL + + ++P + A+ Sbjct: 393 GIGASESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTE 452 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRI 332 A + Q + +S+ + G + TP ++ + + I Sbjct: 453 AILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGRPESVMMSI 510 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + V G ++P + R T + G ++++AG D+++ K G+P LS IP Sbjct: 511 DIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIP 570 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNK 450 ++G LF+ + + E F TP +V + D S + D R Sbjct: 571 LIGNLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPD 630 Query: 451 IYGPKEASEVEGQN 464 + Sbjct: 631 NDIAVPLTPRPLPG 644 >gi|221209590|ref|ZP_03582571.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD1] gi|221170278|gb|EEE02744.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD1] Length = 678 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 43/314 (13%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSE 241 V + VTI ++ D L +G + G++ + G ++ Sbjct: 333 RPRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTF 392 Query: 242 GGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQS 284 G S G F T ++AL + + ++P + A+ Sbjct: 393 GIGASESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTE 452 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRI 332 A + Q + +S+ + G + TP ++ + + I Sbjct: 453 AILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGRPESVMMSI 510 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + V G ++P + R T + G ++++AG D+++ K G+P LS IP Sbjct: 511 DIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIP 570 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNK 450 ++G LF+ + + E F TP +V + D S + D R Sbjct: 571 LIGNLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPD 630 Query: 451 IYGPKEASEVEGQN 464 + Sbjct: 631 NDIAVPLTPRPLPG 644 >gi|161520290|ref|YP_001583717.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia multivorans ATCC 17616] gi|189353532|ref|YP_001949159.1| putative type II secretory pathway [Burkholderia multivorans ATCC 17616] gi|160344340|gb|ABX17425.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans ATCC 17616] gi|189337554|dbj|BAG46623.1| putative type II secretory pathway [Burkholderia multivorans ATCC 17616] Length = 678 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 43/314 (13%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSE 241 V + VTI ++ D L +G + G++ + G ++ Sbjct: 333 RPRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTF 392 Query: 242 GGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQS 284 G S G F T ++AL + + ++P + A+ Sbjct: 393 GIGASESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTE 452 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRI 332 A + Q + +S+ + G + TP ++ + + I Sbjct: 453 AILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGRPESVMMSI 510 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + V G ++P + R T + G ++++AG D+++ K G+P LS IP Sbjct: 511 DIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIP 570 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNK 450 ++G LF+ + + E F TP +V + D S + D R Sbjct: 571 LIGNLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPD 630 Query: 451 IYGPKEASEVEGQN 464 + Sbjct: 631 NDIAVPLTPRPLPG 644 >gi|304311658|ref|YP_003811256.1| Type III secretion pathway protein [gamma proteobacterium HdN1] gi|301797391|emb|CBL45611.1| Type III secretion pathway protein [gamma proteobacterium HdN1] Length = 598 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 18/281 (6%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + + R V + + ++ L++ + ++ TI +V D L++ Sbjct: 298 SEEGISRIVADPQRNAIIIRDKPELMPLYENLVKNLDVPSPV-IEIEATIIDVNTDKLRE 356 Query: 213 IGFQHSITGSSSGPSKS-----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 G + + A D G + + +R F L+ Sbjct: 357 QGVDWGWSNGRTSAMTGEVDAKNNFLEVLAGDAISGLAQNAGMQAGTIIGNRNRFVARLN 416 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 LER ++ + P + ++ A S + G VL TP Sbjct: 417 LLEREGVVKVASRPKVVTLNDLEAVLESSRSVYVPV--QGAYDVDLFKVFSGTVLRVTPH 474 Query: 322 VLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 V++ +I L I E + + + PS T + +++L GL + + Sbjct: 475 VINDVGTKKIRLIISAE-DGVIDEHSTNNAPSVTRNAVSTQAVIEGETSLLLGGLSRTES 533 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP+LGALFR+ + +E TP L+ Sbjct: 534 ITQVRKVPLLGSIPLLGALFRSEAKVVQNSERLFLITPRLL 574 >gi|53716325|ref|YP_106133.1| type III secretion system protein BsaO [Burkholderia mallei ATCC 23344] gi|52422295|gb|AAU45865.1| type III secretion system protein BsaO [Burkholderia mallei ATCC 23344] Length = 606 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 304 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 362 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 363 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 411 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 412 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 469 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 470 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 529 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 530 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 589 >gi|269118877|ref|YP_003307054.1| type II and III secretion system protein [Sebaldella termitidis ATCC 33386] gi|268612755|gb|ACZ07123.1| type II and III secretion system protein [Sebaldella termitidis ATCC 33386] Length = 368 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 11/231 (4%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + Q+ +K TI + ++ +++G S ++ A+DF F+ S Sbjct: 135 RPKKQIQIKATIIDTSDNLFERLGVDFSAGKNNDNK----ASDFLSSFIDGNLSLSGLLK 190 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSV 307 + AL+ I+ A P L + G + + S+ T Sbjct: 191 TGGNFLGINIDALKENGDIKIEAMPVLLILEGSEGELRVTEEVIVGEKKSTIKDTEYIEP 250 Query: 308 TTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELP 363 + GVV P + G I L I +E+S + N D + + K ++ V Sbjct: 251 VFAEAGVVFKIKPEIRGFGDSQEIILYIDSEISNFKLSSNFNADQGAKQKNKINSIVSFK 310 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +G ++ + GL ++ + ++ +P+LSKIPILG+LFR R N+E +I+I Sbjct: 311 NGTSVFIGGLKQNVQKDSEKRVPVLSKIPILGSLFRYKRKNKEIRDIYIEI 361 >gi|313681848|ref|YP_004059586.1| pilus (msha type) biogenesis protein mshl [Sulfuricurvum kujiense DSM 16994] gi|313154708|gb|ADR33386.1| pilus (MSHA type) biogenesis protein MshL [Sulfuricurvum kujiense DSM 16994] Length = 533 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 99/269 (36%), Gaps = 34/269 (12%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------------- 218 ++ L + QV + V + V G S Sbjct: 222 TATNSQMKRLDTYLDDLQKKMQTQVLIDVKMYSVIFSDASSTGIDWSQLYALQNIDLTFD 281 Query: 219 -ITGSSSGPSKSFAADFGGKFVSEGG------DFSVKGVLDRFSFETVLHALERATAIRT 271 + G S + G F G SV + + S V+ L+ + + Sbjct: 282 YVNSKDVGKFTSTNLNTGTSFDEYGTDSVGRTGASVFRLGAKGSLNEVIKFLKTQGDVYS 341 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---------ATSVTTHDYGVVLHFTPTV 322 ++ P + ++ Q A T+G + YKT SS++ V++ GV+L TP + Sbjct: 342 ISNPKILTLNNQPALITAGTELFYKTKSSTSTTAASTTTSENEIVSSVFSGVLLDITPEI 401 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDD 377 G I LRI +SE +N+ + P R+ + + + G ++L GL+ Sbjct: 402 SKDGSITLRINPSISETASVINSSNEQRSMPPDLSRRQMSSVISVQDGSRVILGGLINTK 461 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +PLL IP+LG LF+ N++ Sbjct: 462 NVNDTNKVPLLGDIPVLGYLFKKEGLNKK 490 >gi|172063770|ref|YP_001811421.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia ambifaria MC40-6] gi|171996287|gb|ACB67205.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MC40-6] Length = 680 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 72/449 (16%), Positives = 140/449 (31%), Gaps = 85/449 (18%) Query: 72 SDPTKADVVVH-------SPRTMYLFGKN---VGQANVI--LIGHDGKQMLNLDILIERD 119 ++ AD+ S T+ GK G A ++ L G G Sbjct: 188 ANGAHADIRAFRLRYGWASDFTINRSGKEVTVPGVATILRRLFGKGGGT------NEPPS 241 Query: 120 IAHLEMTLRRFIADSNIRVE-MVSDTVVLHGMVR--TIQDSQRAVELSETFLSQSGRNQY 176 L R+ S + + D + G R + + A F + G + Sbjct: 242 STPLGQAARQVKLGSGLTIAVPRLDFPDISGGARQGSYGGADSAAGGFSPFSNAGGGDTL 301 Query: 177 ANSSSKKVMNLLNIA------------------GEDQVTLKVTIAEVRRDILKQIGFQHS 218 + +N + + V + VTI ++ D L +G Sbjct: 302 PQIVADPAINAVIVRDLPENMYRYQSLINQLDERPRIVEINVTIIDINEDSLDSLGIDWR 361 Query: 219 IT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 + G + + G ++ G S G F Sbjct: 362 LHTTHGDVQIGNGQNPLNGNTQYNGAGNPPLTFGIGTSETGQTGAFLPTGIALTASIGGS 421 Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 T ++AL + + ++P + A+ A + Q + +S+ + Sbjct: 422 LRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLTQFYVQVQGYQD--SSLYSVT 479 Query: 312 YGVVLHFTPTVLSP------------GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 G + TP ++ + + I + V G ++P + R T Sbjct: 480 TGTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTK 539 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D+++ K G+P LS IP++G LF+ + + E F TP +V Sbjct: 540 TMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVV 599 Query: 420 K-----PVAMRDLSRPDDHYSVEDDAKAF 443 ++ D + A + Sbjct: 600 TTASMYAPDGSPVNPGADGPADPSGASMY 628 >gi|238755999|ref|ZP_04617324.1| Possible type III secretion system protein [Yersinia ruckeri ATCC 29473] gi|238705788|gb|EEP98180.1| Possible type III secretion system protein [Yersinia ruckeri ATCC 29473] Length = 558 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 21/232 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L + I ++ + L ++G + SI +G G F+ + + Sbjct: 299 RRQVELSLWIIDISKKKLDEVGVRWSIGDLKAGGG--------------GIAFNQSTLSN 344 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F + A+ R + ++ P + A F + + + Y Sbjct: 345 SAKFLARVDAISRTGDAQIVSRPIVLTQENIPALFDNNSSFYARL--EGERVAKLEQVTY 402 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGT 367 G ++ P + ++ + + E P + G +P T + + Sbjct: 403 GTMVSVLPRISQGDQVEMDVNIEDGSPGRAGSNDVDQIGGLPIVNRTNISTVARIAKDSS 462 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++ G +D +++ E IPLL IP LG LF N+++ P L+ Sbjct: 463 LLIGGYTRDQLEESDEKIPLLGSIPYLGRLFSYRSSNQQKMIRVFLIQPRLL 514 >gi|256846641|ref|ZP_05552097.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2] gi|256717861|gb|EEU31418.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2] Length = 515 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 21/241 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247 QV + I ++ ++ +++GF + ++ G V + Sbjct: 267 PKQVKITSQILDISNNLFEELGFNWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 326 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303 + ++ LE + + PTL SG+ F + + + Sbjct: 327 QFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 387 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 446 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++ Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506 Query: 412 I 412 I Sbjct: 507 I 507 >gi|260888944|ref|ZP_05900207.1| hypothetical protein GCWU000323_00103 [Leptotrichia hofstadii F0254] gi|260861391|gb|EEX75891.1| putative general secretion pathway protein D [Leptotrichia hofstadii F0254] Length = 399 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 124/311 (39%), Gaps = 40/311 (12%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 R++ + L F V + + V+ G +++ +R ++ + Sbjct: 117 EYRNVKDITEALNGFF---GFEVIGIDNKVIFSGDESKVEEMKRIIKSLD---------- 163 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADF 234 ++Q+ +K TI + ++ +++G SI ++S + + A F Sbjct: 164 ---------------KEKEQIIIKGTIIDTSSNLFERLGIDWSINSNNSNATKDNLVAKF 208 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 VS FS G F + L+ IR A PTL + + + L Sbjct: 209 LNGEVSIASIFSKGGRFLGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVL 264 Query: 295 YKTVSSSTGATSVT---THDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVNAG-D 347 ++ T + G+V P + +I L+I TE+S + + Sbjct: 265 VGEKKTTKKDTEYVEPIFSEAGIVFRINPEIRKINGIKKILLKIDTEISNFKLTSSYNAS 324 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + + TT+ L +GG+ + GL +D ++ +P+LSKIPI+G LF+ R NRE Sbjct: 325 SGAKQKNQTKTTITLNNGGSTFIGGLKQDVSKETIRRVPVLSKIPIIGPLFKYRRTNREM 384 Query: 408 TEIFIAATPFL 418 +I+I + Sbjct: 385 RDIYIEIEAVI 395 >gi|119897096|ref|YP_932309.1| general secretion pathway protein D [Azoarcus sp. BH72] gi|119669509|emb|CAL93422.1| general secretion pathway protein D [Azoarcus sp. BH72] Length = 580 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 66/306 (21%), Positives = 117/306 (38%), Gaps = 34/306 (11%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 D+ V E+ + +S + ++ + A QV ++ TI EV Q G Sbjct: 260 DADAVVSNRESGVLVVRATARQHSRIAEFIDAVQRAARRQVMIEATIVEVALGDEYQQGI 319 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 G+ + + + S + L LE + + L+ P Sbjct: 320 DWRRLGNPNWRVAARGSGDANALTPTLSYLS-------DRLDVRLDLLETFGSAKILSSP 372 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA------------TSVTTHDYGVVLHFTPTVL 323 L+ ++ Q+A + +Y V +ST T+ + G+V+ T V Sbjct: 373 RLSVLNNQTAMLKVVEEVVYFLVDASTTQYDDADREKTTATTTPQSVSVGMVMALTAQVS 432 Query: 324 SPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 + G I L ++ +S P +G +P R R+ ++ + L SG T VL GL+ Sbjct: 433 AGGEIILNVRPTISSISGFKDDPNPSLGSIPNRVPQIRTREIESVLRLRSGETAVLGGLI 492 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLS----- 428 +D + IPLL +P+LG +F + +E+ I P +V P D + Sbjct: 493 EDKVDYDTGRIPLLGSLPLLGEVFSHRDNAVRRSELVIFLRPVVVEDPALGGDYAELRQH 552 Query: 429 RPDDHY 434 PD + Sbjct: 553 LPDAGF 558 >gi|304321270|ref|YP_003854913.1| general secretion pathway protein D [Parvularcula bermudensis HTCC2503] gi|303300172|gb|ADM09771.1| general secretion pathway protein D [Parvularcula bermudensis HTCC2503] Length = 736 Score = 131 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 5/176 (2%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTH 310 + +L AL+ + L P++ + + + G + T + G + Sbjct: 484 YGVLLSALQSDSQSNVLQVPSIVLLDNEEGTIQVGQEVPVVTGEAVGSDFQGGFRQIERK 543 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + G +L P + + + L++ EVS P D TV G T+VL Sbjct: 544 NIGNILQVKPQITAGNTVQLKLNLEVSSLGAFAPDAQGPITNESILDLTVSAEDGQTLVL 603 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ D +Q + +P+L IP+LG LF+ + +E+ + I P +++ D Sbjct: 604 GGLVDKDRRQTESKVPVLGDIPLLGNLFKGQAQSDQESTLMIFIRPTILRDAQAAD 659 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 49/381 (12%), Positives = 114/381 (29%), Gaps = 37/381 (9%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI--SIGLNKVIILQVP---VDV 66 + L + + + PI E+N+ +I + + + + I ++K ++ +P Sbjct: 149 AAANLRALAGENSLVTPIVESNSLIIVDTPNNVSRLLSVVDRIDVDKSVVRSIPLDNAAA 208 Query: 67 QDVLVSDPTKAD--------------VVVHSPRTMYLFGKNVGQANVI-----LIGHDGK 107 +V + + V V + ++ L G+ + ++ L Sbjct: 209 SEVAATLSEIVNRPGGQGSRQSSVSIVAVDASNSVVLRGEPEEISRLVPIIRELDSPSRS 268 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD------TVVLHGMVRTIQDSQRAV 161 Q+ I + + L + + + I V + + T G + + Sbjct: 269 QVALDTIYLNHANGAQIVPLIQALLNEPITVAVSGEDDEGRVTTTQSGRQNSGPRASSIA 328 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + T + +++ L+I QV ++ I E+ +++G Q+ G Sbjct: 329 FHAPTNSLVIKAPPETQRLIRGIVSRLDIRRP-QVLIEAVIVEIADTTARELGVQYVSGG 387 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL---- 277 + S + + VS G D T + + + Sbjct: 388 AGLPLSAASFSSTRPNVVSAAGAALFLNEQDDNDNVTTITTTSANGDVTVTEGQSYDAND 447 Query: 278 --TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 AI+GQ + G + YGV+L + + + Sbjct: 448 PDLAIAGQLVEAAVQELLNFNGFLFGAGGETGDGGVYGVLLSALQSDSQSNVLQVPSIVL 507 Query: 336 VSEPVIGVNAGDMPSYRVRKA 356 + + G +A Sbjct: 508 LDNEEGTIQVGQEVPVVTGEA 528 >gi|91203965|emb|CAJ71618.1| hypothetical protein kustc0873 [Candidatus Kuenenia stuttgartiensis] Length = 844 Score = 131 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 96/267 (35%), Gaps = 31/267 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V+ L + QV ++ V + L+ IG + S + + AAD G S Sbjct: 553 EDVLASLRTSQNLQVNIEARFITVTDEFLEDIGTDITRFFSDNTSVSTGAADIAGDLGS- 611 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT---AISGQSASFTSGGQHLYKTV 298 G + + + L A++ + L P +T G A + TV Sbjct: 612 -GIDLNFAIFGNSALKGFLKAVQESKGSEVLTSPRITLSNTQRGNIAVLQTRNYIQSTTV 670 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEV-----------SEPVIGVNAG 346 + T G P V + + + L + V S GV+ G Sbjct: 671 EDGIVTPVIGTVPEGTTFDVRPIVSADRKFVYLEVTPSVFAIEEIESFTFSGLSEGVSVG 730 Query: 347 D--------------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 +P V + TV +P GT+++ GL + G+P+LSKIP Sbjct: 731 GGDGTTYIPPEQTIQLPKLNVSQVSVTVYVPDKGTLMIGGLGSLSNKDETSGVPVLSKIP 790 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 I+ LF + R ++ + I P ++ Sbjct: 791 IIKRLFTRDQKTRNKSNLIILLKPTII 817 >gi|76663415|emb|CAE47791.1| pilus assembling protein [Bdellovibrio bacteriovorus] Length = 510 Score = 131 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 75/419 (17%), Positives = 156/419 (37%), Gaps = 35/419 (8%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82 + + P E A + + I + K + +V ++ L+ D ++ + Sbjct: 88 IMRFTPKSEGFATLTIHDKRNGKIVAEFRIDVKKSKLDKVVREM-RALLGDIEGINIKIV 146 Query: 83 SPRTMY----LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 + R + L K++ + ++ G Q +L L + + R I + I V Sbjct: 147 NNRVVVDGQILLPKDLARIYNVVQ-QFGDQASSLVTLSPLAQKKIAEFIARDINNPEIEV 205 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ--------SGRNQYANSSSKKVMNLLNI 190 V++ ++L G + ++S+RA +++T+L G + ++ V+NL+ I Sbjct: 206 RAVNEKIILQGWANSDEESKRAEIIAKTYLPDIVIEAAEEKGVIKKRKPANDGVINLIQI 265 Query: 191 A------GEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGG 243 + L V E+ +D K FQ + G +S + D G +S Sbjct: 266 KAAPPAAPAKMIQLVVHYVELNKDYSKAFKFQFTPELGDNSTMTFQTGGDSPGGVISSIT 325 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + L+ ++ R L +L G+ Y V G Sbjct: 326 GTV-------SNLLPKLNWAKQHGHARVLESTSLIVEDGKKGEIKQVTNQPYP-VIGKDG 377 Query: 304 ATSVTTHDYGVVLHFTPTVLSP--GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + G+V TP +L G + + + +VS +G P + + V Sbjct: 378 TQGTAFAEVGIVTSITPQLLGEKSGSVRMDMAFKVSSL-LGNTPSGAPITSANEMSSAVT 436 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + + GL+++ P K PI+ +L+ + F +++++ + TP +VK Sbjct: 437 VRDRQSAAVGGLIRNSTSTGYNR-PAGQKNPII-SLYASKDFIKQQSQFVVFVTP-IVK 492 >gi|226356752|ref|YP_002786492.1| secretin [Deinococcus deserti VCD115] gi|226318742|gb|ACO46738.1| putative Secretin precursor (GSP D family protein) [Deinococcus deserti VCD115] Length = 690 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 69/433 (15%), Positives = 145/433 (33%), Gaps = 44/433 (10%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV---IILQVPVDVQDVLV 71 L ++ K+ + + VI ++ + +++ +++ VQ V Sbjct: 275 ALLAAQYPGLKVTAVGQTGQLVITGPQNQLDAALTLLGQVDRPTPPVVVVKDQTVQRVF- 333 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVIL-IGHDGKQMLNLDILIERDIAHLEMTLRRF 130 + + + G + L + N ++ Sbjct: 334 --------TLVNSSAEEVKATLEGTLSRDLSTNTGSNLVPNATLINPLTGQPYTTGPLAN 385 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + S + + + AV + + + + +V L+ Sbjct: 386 VPVSAAAAAPGAAPATTGAAAPSTPAAATAVSIIADKRTNTLIVRGTAEQVAQVAELIPQ 445 Query: 191 --AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + Q+ ++V I E+ + +G S F Sbjct: 446 LDSRVPQINVQVRIQEITESAARSLGVNLKAGFGGFNVSTGAGG--------LSAAFDPT 497 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------------- 294 L F+ L+ L+ +++ + T+T SGQ A ++ Sbjct: 498 QSLVGFNLGATLNTLQNQGLSKSIYDGTITMQSGQRALGSTTDAQNASSTAAASIKSGGR 557 Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP- 349 ++ DYGV L F +P V G I LR++ +V++ +NA +P Sbjct: 558 LEINIPSQAANVPAIQRQIDYGVNLDFFSPQVAPDGTITLRVRGQVNDLQTAINASTIPN 617 Query: 350 --SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + +A TT+ +G T++L+GLL G+P LS IP++GALF ++ Sbjct: 618 LLQFTNSEAQTTLTFKNGETLLLSGLLATKESSTNSGVPFLSSIPVVGALFGQQTTRSQK 677 Query: 408 TEIFIAATPFLVK 420 T++ + T +++ Sbjct: 678 TQLLVVITGNVLR 690 >gi|330937041|gb|EGH41129.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. pisi str. 1704B] Length = 364 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 6/198 (3%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + + + GG + + G S + + F LHALE + + P++ + Q A Sbjct: 6 WNFNAGSVNGGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPA 65 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIG 342 S ++ G L TP L ++ L + E + I Sbjct: 66 VIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDIS 123 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNS 401 PS R T + G++V+ G + +PLL IP +G LF++ Sbjct: 124 DINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGKLLFQSR 183 Query: 402 RFNREETEIFIAATPFLV 419 + E TP L+ Sbjct: 184 SRELSQRERLFILTPRLI 201 >gi|238763779|ref|ZP_04624738.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638] gi|238698081|gb|EEP90839.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638] Length = 425 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 6/207 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L+++G + + + F + + F+V + Sbjct: 217 QQVQLAAHIVTISRENLQELGVRWGMGEPQPTSALRMSDFNVNLPLPTSAVSAGFNVARI 276 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + ALE+ + +A P L Q+AS G Y G T++ Sbjct: 277 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGTTTIEFK 335 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + + ++ T + + G TI Sbjct: 336 EAVLGMEVTPKILRNGKITLNLKISHNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETI 395 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILG 395 VL G+ + Q +P+L+ IP LG Sbjct: 396 VLGGIFQQKNSQGVNKVPMLADIPWLG 422 >gi|42521752|ref|NP_967132.1| putative pilus assembly transmembrane protein [Bdellovibrio bacteriovorus HD100] gi|39574282|emb|CAE77786.1| putative pilus assembly transmembrane protein [Bdellovibrio bacteriovorus HD100] gi|51468906|emb|CAE47779.1| pilus assembling protein [Bdellovibrio bacteriovorus] Length = 509 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 71/393 (18%), Positives = 150/393 (38%), Gaps = 35/393 (8%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY----LFGKNVGQANVILIGH 104 + I + K + +V ++ L+ D ++ + + R + L K++ + ++ Sbjct: 113 EFRIDVKKSKLDKVVREM-RALLGDIEGINIKIVNNRVVVDGQILLPKDLARIYNVVQ-Q 170 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G+Q +L L + + R I + I V V++ ++L G + ++++RA ++ Sbjct: 171 FGEQASSLVTLSPLAQKKIAEFIARDINNPEIEVRAVNEKIILQGWANSDEEAKRAEIIA 230 Query: 165 ETFLSQSGRNQYANS--------SSKKVMNLLNI------AGEDQVTLKVTIAEVRRDIL 210 +T+L ++ V+NL+ I + L V E+ +D Sbjct: 231 KTYLPDIVIEAAEEKGVIKKRRPANDGVINLIQIKEAPAKPPSKMIQLVVHYVELNKDYS 290 Query: 211 KQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 K FQ + G +S + D G +S + L+ ++ Sbjct: 291 KAFKFQFTPELGDNSQMTFQTGGDSPGGVISSITGTV-------SNLLPKLNWAKQHGHA 343 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--GR 327 R L +L G+ Y V G + G+V TP +L G Sbjct: 344 RVLESTSLIVEDGKKGEIKQVTNQPYP-VIGKDGTQGTAFAEVGIVTAITPVLLGEKSGS 402 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + + + +VS +G P + +TV + + + GL+++ P Sbjct: 403 VHMEMAFKVSSL-LGNTPSGAPITSANEMTSTVTVRDRQSAAVGGLIRNSTSTGYNR-PA 460 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 K PI+ +L+ + F +++++ + TP +VK Sbjct: 461 GQKNPII-SLYASKDFIKQQSQFVVFVTP-IVK 491 >gi|254302334|ref|ZP_04969692.1| possible outer bacterial membrane secretin family protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322526|gb|EDK87776.1| possible outer bacterial membrane secretin family protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 515 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 92/241 (38%), Gaps = 21/241 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV + I ++ ++ +++GF + ++ G S ++ Sbjct: 267 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAIILGKAGLNGVGSTVNIVR 326 Query: 253 RFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---- 303 +F+ T ++ LE + + PTL SG+ F + + S Sbjct: 327 QFNNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKSHRDDKKDR 386 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 387 YSEPVFKEAGLIMKVKPIIKDNDYIILEISLELSDFKFKRNVLNLKDINSGTYNSEGGSK 446 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++ Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506 Query: 412 I 412 I Sbjct: 507 I 507 >gi|170698153|ref|ZP_02889232.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] gi|170136918|gb|EDT05167.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] Length = 619 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 106/274 (38%), Gaps = 17/274 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G+ + + RAV +T +++ L+I+ + Q+ L + I ++++ Sbjct: 324 TGIAVSAETDVRAVAYPDTNSIVLTGPLDKVQDMTSLIHSLDIS-KRQIQLSLWIIDIKK 382 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L Q+G S+ S SF LD F + AL++ Sbjct: 383 SCLDQLGVNWQGVFGSNRISGSFNGADNST------------TLDGPKFLVSVMALQQKG 430 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326 ++ P L A F + K + A S+ YG +++ P + G Sbjct: 431 DATIVSRPVLLTQENMPAVFDNNQTFYAKLI--GERAVSLEHVTYGTMINVLPRLTDNGS 488 Query: 327 RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + +++ E +A +P + DT +P ++++ G +DD ++ + I Sbjct: 489 EVEMQVDVEDGNATDTNDAASPLPLVDRTEIDTVARVPREKSLLIGGNTRDDARRHRYRI 548 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P L+ +P++G LFR + ++ P ++ Sbjct: 549 PGLASLPLIGGLFRWRTESHDQVVRVFLIQPKVL 582 >gi|170699432|ref|ZP_02890477.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] gi|170135688|gb|EDT03971.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] Length = 680 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 59/344 (17%), Positives = 114/344 (33%), Gaps = 59/344 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231 + ++N L+ V + VTI ++ D L +G + G + + Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS-----------------FETVLHALERATAIRTLAE 274 G ++ G S G F T ++AL + + ++ Sbjct: 385 NGAGNPPLTFGIGTSETGQTGTFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--------- 325 P + A+ A + Q + +S+ + G + TP ++ Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVS 502 Query: 326 ---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + + I + V G ++P + R T + G ++++AG D+++ K Sbjct: 503 GNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNK 562 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----------PVAMRDLSRPDD 432 G+P LS IP++G LF+ + + E F TP +V PV D Sbjct: 563 SGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTAAMYAPDGSPVNPGAGGPADP 622 Query: 433 H----YSVEDDAKAFFFNRVNKI---YGPKEASEVEGQNYKGAI 469 + Y D+ A +GP + + Sbjct: 623 NGASMYRPPDNDIAVPLTPAPLPGTKFGPPALPPPSSDSASRPV 666 >gi|189424531|ref|YP_001951708.1| type II and III secretion system protein [Geobacter lovleyi SZ] gi|189420790|gb|ACD95188.1| type II and III secretion system protein [Geobacter lovleyi SZ] Length = 792 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 69/454 (15%), Positives = 140/454 (30%), Gaps = 88/454 (19%) Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD----VLVSDPTK---- 76 L + + A + D+++ K +++ N + ++ + V DP Sbjct: 165 ALQRVAGSPATSLAGRDLQLTSVKPLTLKANGTRLKELFSTITRHSGINFVFDPDFKDQP 224 Query: 77 ----------------------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114 D V + T+ ++ ++ + L Sbjct: 225 ATLTLENSGFRQALDLLAALHRIDYAVINESTVLIYPQSAEKTK-----QYQDMQLRTFH 279 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 L D +R + + + ++ +V+ ++ +E + Sbjct: 280 LNHLDAKKAANLIRTMLQVRRLYINEDANALVVRDTSDVTDVIEKILEAHDL-------- 331 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 E +V L V + E+ +G S G Sbjct: 332 -----------------PEAEVVLDVEVIEISDKNAHNVGLLLSNYDVQLGAFSPSNELL 374 Query: 235 GGKFVSEGG-----------------DFSVKGVLDRFSF-ETVLHALERATAIRTLAEPT 276 FS+ + + + L+ P Sbjct: 375 ATTLKDTTSTTSTTVTTDATIKNLVKAFSINSFGGYVTVPNAQYNFGKTLANGEVLSNPK 434 Query: 277 LTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + + A F G + + +T +V D GV ++ PT+ + +++ Sbjct: 435 IRVKNKEKAKFNVGTRVPITTTTMATTGTTSQVNVQYVDVGVKVNAEPTIQLNNEVSIKL 494 Query: 333 QTEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 EVS + G + + R DT + L G T V+ GL+ K+ I Sbjct: 495 GLEVSSIISRETVGGKDSATTVVTIGTRNLDTVLSLKDGETSVIGGLISHSNSDSKQKIF 554 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 LL IP++G L NS+ + ++TE+ +A TP LV+ Sbjct: 555 LLGDIPLIGPLLSNSKTDNDKTELILAITPRLVR 588 >gi|320656547|gb|EFX24443.1| type III secretion system outer membrane pore InvG [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 567 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 86/271 (31%), Gaps = 18/271 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 ++ ++ + + +K++ L+I + L + I ++ + L+ Sbjct: 264 APETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDIDKTDLE 322 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 Q+G S G + + LD F + AL + Sbjct: 323 QLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQKRRAAV 371 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P + A F + K V T + YG ++ P + +I L Sbjct: 372 VARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARNQIELL 429 Query: 332 IQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + E N D+P T +P G ++++ G +D IP+L Sbjct: 430 LNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKIPILG 489 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP +G LF N P + Sbjct: 490 SIPFIGKLFGYEGTNANNIVRVFLIEPREID 520 >gi|296328369|ref|ZP_06870896.1| general secretion pathway protein D [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154548|gb|EFG95338.1| general secretion pathway protein D [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 515 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247 QV + I ++ ++ +++GF + ++ G V + Sbjct: 267 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 326 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303 + T ++ LE + + PTL SG+ F + + + Sbjct: 327 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 387 YSEPVFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 446 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++ Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506 Query: 412 I 412 I Sbjct: 507 I 507 >gi|134294019|ref|YP_001117755.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia vietnamiensis G4] gi|134137176|gb|ABO58290.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia vietnamiensis G4] Length = 679 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 58/354 (16%), Positives = 114/354 (32%), Gaps = 73/354 (20%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVTL 198 + A F + G + + +N + + V + Sbjct: 282 ADSAAGGISPFSAGGGGDALPQIVADPAINAVIVRDLPENMYRYQSLIDQLDERPRIVEI 341 Query: 199 KVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVK 248 VTI ++ D L +G + G + + G ++ G S Sbjct: 342 NVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQYNGAGNPPLTFGIGASET 401 Query: 249 GVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G F T ++AL + + ++P + A+ A + Sbjct: 402 GQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLT 461 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEP 339 Q + +S+ + G + TP ++ + + I + Sbjct: 462 QFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDEAIRHAAAVSGTPQSVMMSIDIQDGNI 519 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V G ++P + R T + G ++++AG D+++ K G+P LS IP++G LF+ Sbjct: 520 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 579 Query: 400 NSRFNREETEIFIAATPFLVK----------PVAMRDLSRPDDH----YSVEDD 439 + + E F TP +V PV + D + Y D+ Sbjct: 580 YTDKSGNHMERFYLLTPRVVTNASMYAPDGSPVNPGADAPADPNAMSMYRPPDN 633 >gi|115358977|ref|YP_776115.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia ambifaria AMMD] gi|115284265|gb|ABI89781.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria AMMD] Length = 681 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 58/354 (16%), Positives = 114/354 (32%), Gaps = 73/354 (20%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVTL 198 + A F + G + + +N + + V + Sbjct: 282 ADSAAGGFSPFSNAGGGDTLPQIVADPAINAVIVRDLPENMYRYQSLINQLDERPRIVEI 341 Query: 199 KVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVK 248 VTI ++ D L +G + G + + G ++ G S Sbjct: 342 NVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQYNGAGNPPLTFGIGTSET 401 Query: 249 GVLDRFS-----------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G F T ++AL + + ++P + A+ A + Sbjct: 402 GQTGAFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLT 461 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEP 339 Q + +S+ + G + TP ++ + + I + Sbjct: 462 QFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQDGNI 519 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V G ++P + R T + G ++++AG D+++ K G+P LS IP++G LF+ Sbjct: 520 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 579 Query: 400 NSRFNREETEIFIAATPFLVK----------PVAMRDLSRPDDH----YSVEDD 439 + + E F TP +V PV + D + Y D+ Sbjct: 580 YTDKSGNHMERFYLLTPRVVTTAAMYAPDGSPVNPGAGAPADPNGASMYRPPDN 633 >gi|237743199|ref|ZP_04573680.1| general secretion pathway protein D [Fusobacterium sp. 7_1] gi|229433495|gb|EEO43707.1| general secretion pathway protein D [Fusobacterium sp. 7_1] Length = 423 Score = 130 bits (326), Expect = 7e-28, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 21/241 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247 QV + I ++ ++ +++GF + ++ G V + Sbjct: 175 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 234 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303 + ++ LE + + PTL SG+ F + + + Sbjct: 235 QFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 294 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 295 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 354 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++ Sbjct: 355 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 414 Query: 412 I 412 I Sbjct: 415 I 415 >gi|237741044|ref|ZP_04571525.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13] gi|229431088|gb|EEO41300.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13] Length = 423 Score = 130 bits (326), Expect = 7e-28, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 21/241 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247 QV + I ++ ++ +++GF + ++ G V + Sbjct: 175 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 234 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303 + ++ LE + + PTL SG+ F + + + Sbjct: 235 QFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 294 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 295 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 354 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++ Sbjct: 355 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 414 Query: 412 I 412 I Sbjct: 415 I 415 >gi|38639336|gb|AAR25802.1| BcscC [Burkholderia multivorans E243] Length = 504 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 43/314 (13%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSE 241 V + VTI ++ D L +G + G++ + G ++ Sbjct: 159 RPRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTF 218 Query: 242 GGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQS 284 G S G F T ++AL + + ++P + A+ Sbjct: 219 GIGASESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTE 278 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRI 332 A + Q + +S+ + G + TP ++ + + I Sbjct: 279 AILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGRPESVMMSI 336 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + V G ++P + R T + G ++++AG D+++ K G+P LS IP Sbjct: 337 DIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIP 396 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNK 450 ++G LF+ + + E F TP +V + D S + D R Sbjct: 397 LIGNLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPD 456 Query: 451 IYGPKEASEVEGQN 464 + Sbjct: 457 NDIAVPLTPRPLPG 470 >gi|260495319|ref|ZP_05815446.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33] gi|260197097|gb|EEW94617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33] Length = 515 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247 QV + I ++ ++ +++GF + ++ G V + Sbjct: 267 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIVR 326 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303 + T ++ LE + + PTL SG+ F + + + Sbjct: 327 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 387 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 446 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++ Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506 Query: 412 I 412 I Sbjct: 507 I 507 >gi|291297113|ref|YP_003508511.1| type II and III secretion system protein [Meiothermus ruber DSM 1279] gi|290472072|gb|ADD29491.1| type II and III secretion system protein [Meiothermus ruber DSM 1279] Length = 509 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 59/341 (17%), Positives = 116/341 (34%), Gaps = 40/341 (11%) Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 I + R +++ A S+ R ++D + G T Q + Q+ Sbjct: 180 IDVPRATTATIPVVQKSFALSHARATELADVL---GKAITAQAQGQTTPAQGQGQGQAQP 236 Query: 174 NQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGF 215 ++ N L + G QV L++ + V ++++ +G Sbjct: 237 APQVTVVAEPRTNTLIVTGTAEQIALAERLIPNLDRPVQQVQLQIRVQAVSGEVIRNLGI 296 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + + + + F + L + VL ALE+ R L++ Sbjct: 297 KWETVSGGNLIASFLSTGLNLIFDA-------TRSLASLNIRAVLDALEKQQLSRRLSDA 349 Query: 276 TLTAISGQSASF-----------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + A + +V DYG+++ P + + Sbjct: 350 NVLVEDNYGADTSDLRATGAKGAEIKVGGRLLIPITIGDQITVREFDYGLLVRVRPQIST 409 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G I L + T+ + + + + + G T+VL GL++ + Sbjct: 410 DGNILLEVFTQ-TGGDPADGPAGSIRIPQQSTLSKLRIRDGQTVVLGGLIQKVTDTSETK 468 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 IPLL IP+LG LF+ + ++ E+ + T +VK A R Sbjct: 469 IPLLGDIPLLGELFKQRTSSIKDDELIVIITGNIVKDSAQR 509 >gi|256027610|ref|ZP_05441444.1| general secretion pathway protein D [Fusobacterium sp. D11] Length = 515 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247 QV + I ++ ++ +++GF + ++ G V + Sbjct: 267 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIVR 326 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303 + T ++ LE + + PTL SG+ F + + + Sbjct: 327 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 387 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 446 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++ Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506 Query: 412 I 412 I Sbjct: 507 I 507 >gi|167743212|ref|ZP_02415986.1| Type III secretion system protein [Burkholderia pseudomallei 14] Length = 309 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 7 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 66 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 114 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 172 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 233 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 292 >gi|324014333|gb|EGB83552.1| bacterial type II and III secretion system protein [Escherichia coli MS 60-1] Length = 193 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 8/194 (4%) Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G+ D L A++ + + ++ P + SGQ+ + G + Sbjct: 1 ALGSALSTAGGSFGIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPF 60 Query: 296 KTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 T + ++ HD GV L TP V+ G++ L I T A D+ Sbjct: 61 ITGKVTGESAGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDI 120 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R+ TTV++ G T++L GL+ + +P++SKIP++G +F + + E+ Sbjct: 121 -ITNQRQIQTTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNEQR 179 Query: 409 EIFIAATPFLVKPV 422 ++I T +++P+ Sbjct: 180 IMYILLTAHIIRPL 193 >gi|171915470|ref|ZP_02930940.1| type II and III secretion system protein:NolW-like [Verrucomicrobium spinosum DSM 4136] Length = 896 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 94/253 (37%), Gaps = 24/253 (9%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 Q+ L I E G T S G A V G+ Sbjct: 516 KRPRQILLTAVIGEFTLGNDFSFGVDWLHTLESVGKDGLIAGALNTSGVEPVDFTKFGGI 575 Query: 251 LD-------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ----- 292 D L LE+ L +PT+TA++ + A+ G Sbjct: 576 EDFAAPQGLAVYGHIGKHLNVFLRTLEQNKRFHVLQKPTVTALNHEEANIFIGQDLAIAG 635 Query: 293 ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAG 346 TV+ ++ A++ + L TP + + + L + ++ ++ Sbjct: 636 QTLTTGGTTVNGASVASTTDYVKVRLELRITPHIFANDEVRLDFEQTNNDVSGFTEISGN 695 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P+ V+ T+ +P+ T++L GL+ + + K G+P L ++P+L LF N+ ++E Sbjct: 696 RVPNLSVQGMRNTIIVPNRSTVLLGGLITERDSKNKNGLPFLVRVPVLKHLFGNTSNSKE 755 Query: 407 ETEIFIAATPFLV 419 E+ I P ++ Sbjct: 756 RRELMIFVQPQIL 768 >gi|157364734|ref|YP_001471501.1| type II and III secretion system protein [Thermotoga lettingae TMO] gi|157315338|gb|ABV34437.1| type II and III secretion system protein [Thermotoga lettingae TMO] Length = 385 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 5/227 (2%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV + V ++EV +D L +IG G + G ++ + D+ G SV+ + Sbjct: 164 PRQVKISVVVSEVSKDNLGEIGLD--QIGYTFGANQQYNEDWTAVLGLISGVLSVQTDVF 221 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 L ALE+ + A+P + + A G + + T+ T Sbjct: 222 GT-IVARLRALEQDQKAKIKADPWIIVQENKPARLFVGQREIIILQPEEGTTTTETVDVG 280 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 V + T V+ + + + +S + S + + TT+ + SG T+V++G Sbjct: 281 -VGIDITARVVGKNELEINVAPNISHFTTAQTTSSL-STKRSELSTTLRIQSGQTVVISG 338 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L ++ GIPLL IP+L LF ++ + E+ I + ++ Sbjct: 339 LTVENSSDGYTGIPLLGNIPLLRYLFGVKSDSQSQREVIIFLSAEIL 385 >gi|167840181|ref|ZP_02466865.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia thailandensis MSMB43] Length = 579 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 107/284 (37%), Gaps = 21/284 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 276 GVAVPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 334 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F GG + LD F + AL + Sbjct: 335 RLDQLGIDWQGALNAPGIGVGFNNRGGGNVTT----------LDGTKFLASVAALSQTGD 384 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + A + YG +++ P + + Sbjct: 385 ATVISRPIVLTQENVPATFDSNQTFYAKLI--GERAVQLDHVTYGTLVNVLPRLTRDASQ 442 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I V+ MP + +T +P ++++ G +DD+ + Sbjct: 443 VEMIVDIEDGNTDGATSDGQIVVDNNAMPLVNRTEINTVARVPREMSLLIGGNTRDDVTR 502 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP L+ IP++G LFR E+ P L++ A Sbjct: 503 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 546 >gi|83717183|ref|YP_439025.1| type III secretion system protein BsaO [Burkholderia thailandensis E264] gi|83651008|gb|ABC35072.1| type III secretion system protein BsaO [Burkholderia thailandensis E264] Length = 619 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 317 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 375 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 376 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 424 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 425 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 482 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 483 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 542 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ +P++G LFR E+ P L++ A +P + D+A Sbjct: 543 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 602 >gi|34762860|ref|ZP_00143844.1| General secretion pathway protein D [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887468|gb|EAA24554.1| General secretion pathway protein D [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 423 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 21/241 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247 QV + I ++ ++ +++GF + ++ G V + Sbjct: 175 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGLNGVGSTVNIVR 234 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303 + ++ LE + + PTL SG+ F + + + Sbjct: 235 QFHNKSDVLSVGINLLEATNDLVVSSVPTLLIASGEEGEFKVTEEVVVGIKTHREDKKDR 294 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 295 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 354 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++ Sbjct: 355 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 414 Query: 412 I 412 I Sbjct: 415 I 415 >gi|167923347|ref|ZP_02510438.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei BCC215] Length = 353 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 51 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 109 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 110 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 158 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 159 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 216 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 217 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 276 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 277 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 336 >gi|46447109|ref|YP_008474.1| putative component D of type II secretion pathway [Candidatus Protochlamydia amoebophila UWE25] gi|46400750|emb|CAF24199.1| putative component D of type II secretion pathway [Candidatus Protochlamydia amoebophila UWE25] Length = 953 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 83/268 (30%), Gaps = 41/268 (15%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK----- 248 QV +++ I + G + G + ++ Sbjct: 634 RQVFIEMLILDTTITDSLTYGVDWGSRFGGGNTAGGQNFLGTGSGLVGSLTNAITNNPIV 693 Query: 249 --------------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G L + ++ A+ T I + P + +A Sbjct: 694 DTVLSGDGYTAGIIGRHLTHGGLHFSTIGALVKAIHSDTKINIIMNPKIVTEDNNTAEVF 753 Query: 289 SGGQHLYKTVSSSTGATSV-----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G YKT S + SV D G L TP + + G I L I EV+ Sbjct: 754 VGSTDRYKTQSIANDIGSVITNNFQFIDVGTTLRVTPLIGNNGIITLDIIQEVTNDGGNA 813 Query: 344 N-----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 N +P + T V +P G ++L+G+++ + IP L +P Sbjct: 814 NPNVGNNPSVVDVNLVPVLSKSRTVTKVHVPDGFFVILSGMIQSTESRSVNRIPCLGGLP 873 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420 ++G + + + + I P +V Sbjct: 874 LIGGISKQKSNRDSKRNLMIFIRPLIVD 901 >gi|307247528|ref|ZP_07529573.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856031|gb|EFM88189.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 204 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 5/180 (2%) Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + LAEP ++ +SG++A GG+ + G SV ++G+ L V R Sbjct: 4 NGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKSDR 62 Query: 328 IGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + VS + +P + R++ +T E+ +G + +++GLL + + + Sbjct: 63 IRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKV 122 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + FF Sbjct: 123 PVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFFN 180 >gi|167820388|ref|ZP_02452068.1| Type III secretion system protein [Burkholderia pseudomallei 91] Length = 324 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 22 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 80 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 81 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 129 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 130 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 187 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 188 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 247 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 248 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 307 >gi|76817430|ref|YP_335745.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1710b] gi|76581903|gb|ABA51377.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710b] Length = 339 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 37 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 95 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 96 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 144 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 145 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 202 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 203 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 262 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 263 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 322 >gi|19705376|ref|NP_602871.1| general secretion pathway protein D [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713363|gb|AAL94170.1| General secretion pathway protein D [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 402 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247 QV + I ++ ++ +++GF + ++ G V + Sbjct: 154 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 213 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303 + T ++ LE + + PTL SG+ F + + + Sbjct: 214 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 273 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 274 YSEPVFKEAGLIMKVKPIIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 333 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++ Sbjct: 334 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 393 Query: 412 I 412 I Sbjct: 394 I 394 >gi|167915501|ref|ZP_02502592.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 112] Length = 348 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 46 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 104 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 105 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 153 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 154 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 211 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 212 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 271 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 272 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 331 >gi|167908440|ref|ZP_02495645.1| Type III secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 360 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 58 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 116 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 117 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 165 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 166 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 223 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 224 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 283 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 284 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 343 >gi|167898820|ref|ZP_02486221.1| Type III secretion system protein [Burkholderia pseudomallei 7894] Length = 325 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 23 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 81 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 82 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 130 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 131 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 188 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 189 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 248 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 249 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 308 >gi|37522007|ref|NP_925384.1| hypothetical protein glr2438 [Gloeobacter violaceus PCC 7421] gi|35213006|dbj|BAC90379.1| glr2438 [Gloeobacter violaceus PCC 7421] Length = 493 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 66/366 (18%), Positives = 123/366 (33%), Gaps = 61/366 (16%) Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149 G VG N+ G + L L + V+ ++++V G Sbjct: 162 LGAQVGSTNL---GSTQPGAATTNPDPAATSGPLRGELF-------VTVDARTNSLVAVG 211 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 RA+++++ L+ L++ QV + V + +V + Sbjct: 212 SP-------RALQIAQVQLA-----------------QLDVRQR-QVMIDVKLVDVNLNN 246 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV---------- 259 + +GF+ + + A G + G + F T+ Sbjct: 247 VSDLGFRLGGSAGNFQLGTVGGAADLGASYPAAVGLTGGGPGNTLIFNTLGALASAMALR 306 Query: 260 LHALERATAIRTLAEPTLTAISG-----------QSASFTSGGQHLYKTVSSSTGATSVT 308 L + + R LA P L SG + G + + T++ Sbjct: 307 LDTAIQEGSARVLASPQLLVASGAGFSKPTAARVEITDDVVVGATITTDRETGQSTTTIK 366 Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKAD-TTVELP 363 GV L V G + + ++ +VS + + R D + L Sbjct: 367 VDKVGVSLEIAVYQVDDNGFVDVSLKPQVSSINDIQRDAAGNLVTLLTRRNLDIQRLRLR 426 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G T V+ G++++ +QL + +PLL +P+LGALFR E E+ + TP ++K Sbjct: 427 DGETFVIGGVIREIDRQLVQKMPLLGDLPVLGALFRFQSNQHERREVALMVTPHILKESV 486 Query: 424 MRDLSR 429 Sbjct: 487 HEAAPL 492 >gi|182414666|ref|YP_001819732.1| type II and III secretion system protein [Opitutus terrae PB90-1] gi|177841880|gb|ACB76132.1| type II and III secretion system protein [Opitutus terrae PB90-1] Length = 895 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 46/260 (17%) Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 QIG I ++ G ++ ++ GV+ F V+ AL + Sbjct: 627 TSSAQIGIDLPIVNNAPRIPGGADLALGAGPLA-----TISGVIGEFDVNAVVRALSQQQ 681 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------------------GAT 305 L+ P +T +SG A+ T + Y T Sbjct: 682 GTDLLSAPKVTVLSGNPATITVAQEMRYPQSFGQTQSQVGTGNASGGGSAGVAITAGTPQ 741 Query: 306 SVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGD----------------- 347 T + GV L TPTV I L + +V+E V G Sbjct: 742 EFTKRNIGVELRVTPTVEEDDYSISLDLNPKVTEFDGFVEYGGPSIAISGSTTVTVPSGF 801 Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P + VR T V + G T+V+ GL +++++++ + +P+L +P++G FR+ + + Sbjct: 802 YQPIFSVRDIATKVTIWDGATLVMGGLTREEVKKVNDKVPILGDLPLIGRAFRSKGESAQ 861 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + I T LV P Sbjct: 862 KRNLLIFVTANLVNPGGAPK 881 >gi|167828759|ref|ZP_02460230.1| Type III secretion system protein [Burkholderia pseudomallei 9] Length = 326 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 24 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 82 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 83 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 131 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 132 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 189 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 190 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 249 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 250 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 309 >gi|167724236|ref|ZP_02407472.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei DM98] Length = 351 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 49 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 107 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 108 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 156 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 157 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 214 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 215 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 274 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 275 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 334 >gi|167850214|ref|ZP_02475722.1| Type III secretion system protein [Burkholderia pseudomallei B7210] Length = 333 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 31 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 89 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 90 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 138 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 139 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 196 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 197 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 256 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 257 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 316 >gi|289765568|ref|ZP_06524946.1| general secretion pathway protein D [Fusobacterium sp. D11] gi|289717123|gb|EFD81135.1| general secretion pathway protein D [Fusobacterium sp. D11] Length = 423 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247 QV + I ++ ++ +++GF + ++ G V + Sbjct: 175 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIVR 234 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303 + T ++ LE + + PTL SG+ F + + + Sbjct: 235 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 294 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 295 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 354 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++ Sbjct: 355 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 414 Query: 412 I 412 I Sbjct: 415 I 415 >gi|257487975|ref|ZP_05642016.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 243 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 13/231 (5%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I + Sbjct: 23 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 82 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 +G++ L + + A + L+ S R+ V+ G V+ + ++ L Sbjct: 83 EGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + +N AG QV ++V AEV R L + G + ++ Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192 Query: 225 GPSKSFAA---DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 S S + + +L AL+ + L Sbjct: 193 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVL 243 >gi|254250197|ref|ZP_04943517.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia PC184] gi|124876698|gb|EAY66688.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia PC184] Length = 463 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 102/277 (36%), Gaps = 42/277 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231 + ++N L+ V + VTI ++ D L +G + G ++ + Sbjct: 78 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQY 136 Query: 232 ADFGGKFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAE 274 G ++ G S G F T ++AL + + ++ Sbjct: 137 NGVGNPPLTFGIGTSETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 196 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--------- 325 P + A+ A + Q + +S+ + G + TP ++ Sbjct: 197 PKVLALDNTEAILENLTQFYVQVPGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVS 254 Query: 326 ---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + + I + V G ++P + R T + G ++++AG D+++ K Sbjct: 255 GNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNK 314 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+P LS IP++G LF+ + + E F TP +V Sbjct: 315 SGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVV 351 >gi|257142133|ref|ZP_05590395.1| type III secretion system protein BsaO [Burkholderia thailandensis E264] Length = 600 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 298 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 356 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 357 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 405 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 406 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 463 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 464 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 523 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ +P++G LFR E+ P L++ A +P + D+A Sbjct: 524 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 583 >gi|207724596|ref|YP_002254993.1| hrcc (hrpa) protein (partial sequence c terminus) [Ralstonia solanacearum MolK2] gi|206589818|emb|CAQ36779.1| probable hrcc (hrpa) protein (partial sequence c terminus) [Ralstonia solanacearum MolK2] Length = 303 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 85/245 (34%), Gaps = 23/245 (9%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241 + +I ++ L+Q+G + S A+ Sbjct: 61 ISASIIDITETALEQLGVDWRLHNSRFDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 120 Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG S + AL++ R A P + + A + Sbjct: 121 TPAGGVLSAVIGGGSRYLMARISALQQTNQARITASPKVATLDNTEAVMDNRQNFYVPVA 180 Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356 + + GV L P V+ G + +R+ + + I G++P + Sbjct: 181 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPVTSQSEI 238 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT + G ++++AG D + + IP LSKIP++GALFR + + + TP Sbjct: 239 DTQALINEGESLLIAGYSVDQQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVTP 298 Query: 417 FLVKP 421 ++ P Sbjct: 299 RVITP 303 >gi|149917610|ref|ZP_01906107.1| type II and III secretion system protein [Plesiocystis pacifica SIR-1] gi|149821673|gb|EDM81071.1| type II and III secretion system protein [Plesiocystis pacifica SIR-1] Length = 777 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 105/306 (34%), Gaps = 43/306 (14%) Query: 148 HGMVR-TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G V+ T ++ R++ + + + +++ L+ QV L++ + E Sbjct: 375 SGDVKITADEATRSLVIIASAADYKSL--------EPIIDELD-RDRKQVYLEIYLLEAS 425 Query: 207 --RDILKQIGFQHSITGSS-------------------SGPSKSFAADFGGKFVSE---G 242 R + G + S + + G + G Sbjct: 426 VGRSLTTGAGAHFAGQFGQGEQQSVGLISSSPSPDVSSILLSPAALSGLAGGLIGPQLIG 485 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----- 297 + D +F V+ AL+ + +AEP + + A G + Sbjct: 486 TGAQLGLERDIPAFGVVIQALQSNDDVNIVAEPHIYTADNKEAQIEVGRKVPTPGALQFG 545 Query: 298 ----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 +S T S+ D + + TP V + L I+ E + V + + + Sbjct: 546 GAGGGTSLTPLQSINREDVTLDIKVTPHVKDETSLTLDIELEDRDVVDQDPVLGVTTTKR 605 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V +VL GL+++ + + +P L IPILG LF+ +E+ + I Sbjct: 606 RIKLENVLARDDLPVVLGGLMRERELENTQQVPGLGSIPILGWLFKRRVKQKEKINLLIV 665 Query: 414 ATPFLV 419 P +V Sbjct: 666 LIPHVV 671 >gi|206563896|ref|YP_002234659.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|18092668|gb|AAL59397.1| BcscC [Burkholderia cenocepacia] gi|28394249|gb|AAO31724.1| BcscC [Burkholderia cenocepacia] gi|198039936|emb|CAR55914.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 681 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 52/314 (16%), Positives = 106/314 (33%), Gaps = 59/314 (18%) Query: 167 FLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVTLKVTIAEVRRD 208 F + G + + +N + + V + VTI ++ D Sbjct: 293 FSNNGGGDTLPQIVADPAINAVIVRDLPENMYRYQSLIGQLDERPRIVEINVTIIDINED 352 Query: 209 ILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---- 254 L +G + G ++ + G ++ G S G F Sbjct: 353 SLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQYNGAGNPPLTFGIGTSETGQTGAFMPTG 412 Query: 255 -------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 T ++AL + + ++P + A+ A + Q + Sbjct: 413 IALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLTQFYVQVPGYQ 472 Query: 302 TGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEPVIGVNAGDMP 349 +S+ + G + TP ++ + + I + V G ++P Sbjct: 473 D--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQDGNIVPGQAVSNVP 530 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R T + G ++++AG D+++ K G+P LS IP++G LF+ + + E Sbjct: 531 VIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFKYTDKSGNHME 590 Query: 410 IFIAATPFLVKPVA 423 F TP +V + Sbjct: 591 RFYLLTPRVVTSAS 604 >gi|107025868|ref|YP_623379.1| Type III secretion system outer membrane pore YscC/HrcC [Burkholderia cenocepacia AU 1054] gi|116692948|ref|YP_838481.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia cenocepacia HI2424] gi|105895242|gb|ABF78406.1| Type III secretion system outer membrane pore YscC/HrcC [Burkholderia cenocepacia AU 1054] gi|116650948|gb|ABK11588.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia cenocepacia HI2424] Length = 681 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 102/277 (36%), Gaps = 42/277 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231 + ++N L+ V + VTI ++ D L +G + G ++ + Sbjct: 327 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQY 385 Query: 232 ADFGGKFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAE 274 G ++ G S G F T ++AL + + ++ Sbjct: 386 NGVGNPPLTFGIGTSETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 445 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--------- 325 P + A+ A + Q + +S+ + G + TP ++ Sbjct: 446 PKVLALDNTEAILENLTQFYVQVPGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVS 503 Query: 326 ---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + + I + V G ++P + R T + G ++++AG D+++ K Sbjct: 504 GNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNK 563 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+P LS IP++G LF+ + + E F TP +V Sbjct: 564 SGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVV 600 >gi|297622120|ref|YP_003710257.1| putative general secretion pathway protein D [Waddlia chondrophila WSU 86-1044] gi|297377421|gb|ADI39251.1| putative general secretion pathway protein D [Waddlia chondrophila WSU 86-1044] Length = 865 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 95/271 (35%), Gaps = 34/271 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--- 238 K+++ L++ + V ++V + E G GS++ + + G Sbjct: 530 KEIIAKLDVP-KKMVQIEVLLFERILQRDISYGLNLLKIGSAASQKHRTSTVWAGGLDQC 588 Query: 239 --VSEGGDFSVKGVL-------------DRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 +++ + G +F+ L + A P++ AI+ Sbjct: 589 EAIADASTIATCGRGVIDFFISRKKTDSGIPAFDLAYKFLMSQDNVYLTASPSVVAINQT 648 Query: 284 SASFTSGGQHLYKTVSSSTGATSV------TTHDYGVVLHFTP---------TVLSPGRI 328 A + + ++ T + +V T YG+ + TP I Sbjct: 649 EAVISIQDERSILVGTNITDSAAVPAQNAFTRAQYGITIRVTPIIHYSEDTDFGDPENYI 708 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L + P R+ V +P G +++ GL + + + IP L Sbjct: 709 TLNSEITFDTIPPSQQNSSQPQVNRRQIINQVNIPDGQAVIIGGLQRKQGSDMCDKIPFL 768 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++P LG LF ++ EETE+ I TP ++ Sbjct: 769 GELPGLGKLFSTTQLTDEETELVIFMTPKII 799 >gi|170737787|ref|YP_001779047.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia cenocepacia MC0-3] gi|169819975|gb|ACA94557.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia cenocepacia MC0-3] Length = 681 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 52/310 (16%), Positives = 105/310 (33%), Gaps = 59/310 (19%) Query: 167 FLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVTLKVTIAEVRRD 208 F + G + + +N + + V + VTI ++ D Sbjct: 293 FANNGGGDTLPQIVADPAINAVIVRDLPENMYRYQSLISQLDERPRIVEINVTIIDINED 352 Query: 209 ILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---- 254 L +G + G ++ + G ++ G S G F Sbjct: 353 SLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQYNGVGNPPLTFGIGTSETGQTGTFMPTG 412 Query: 255 -------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 T ++AL + + ++P + A+ A + Q + Sbjct: 413 IALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLTQFYVQVPGYQ 472 Query: 302 TGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEPVIGVNAGDMP 349 +S+ + G + TP ++ + + I + V G ++P Sbjct: 473 D--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQDGNIVPGQAVSNVP 530 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R T + G ++++AG D+++ K G+P LS IP++G LF+ + + E Sbjct: 531 VIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNKSGVPWLSDIPLIGNLFKYTDKSGNHME 590 Query: 410 IFIAATPFLV 419 F TP +V Sbjct: 591 RFYLLTPRVV 600 >gi|282890888|ref|ZP_06299405.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499242|gb|EFB41544.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus] Length = 955 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 96/274 (35%), Gaps = 47/274 (17%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSS----------------------------SG 225 QV +++ I + D G +G Sbjct: 623 RQVFIEMLILDSSLDDSLNYGVNWGTRFGGGDTAGSQAFLSSASTLPGALDTTGIANTNG 682 Query: 226 PSKSFAADFGGKFVSEGGDFSVK--------GVLDRFSFETVLHALERATAIRTLAEPTL 277 S ++ +++ G L SF ++ A+ T+ + P + Sbjct: 683 ISTGQILTPNANTLARTPGYNLGIVGQTVSVGNLTFQSFGALVKAIHDKTSTNIVMNPKI 742 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A +A G Y+T S S T+ + G L TP + + + L I Sbjct: 743 LAEDNVTAEIFVGENTQYQTQSISNDQGSVITTNFEYRNIGTTLKITPFLGNNDIVTLEI 802 Query: 333 QTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + EVS NA + P+ R+ + T V +P +V++G+++D + + +P Sbjct: 803 RQEVSSVASTTNAQALNNITPGPTTRLSRTTTRVHVPDKYFLVISGMVQDQETRRRVSVP 862 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L +P++GA F + E+ + I P ++ Sbjct: 863 CLGGLPVIGAAFSDKNVTDEKRNLMIFIRPEIID 896 >gi|262039342|ref|ZP_06012655.1| general secretion pathway protein D [Leptotrichia goodfellowii F0264] gi|261746604|gb|EEY34130.1| general secretion pathway protein D [Leptotrichia goodfellowii F0264] Length = 385 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 103/236 (43%), Gaps = 12/236 (5%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADFGGKFVSEGGDFSVKG 249 +DQ+ +K TI + ++ +++G +I ++ P+ + A F ++ G F+ G Sbjct: 149 RPKDQIIIKGTIIDTSSNLFEKLGVDWNINSNNPEPAKSNLVAKFLNGEITIGSIFASGG 208 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT- 308 F + L I+ A PTL + + + L ++ T T Sbjct: 209 KFLGIDF----NLLRENGDIKIEAMPTLLIMEDEEGELKVTEEVLVGEKKTTKNNTDYTE 264 Query: 309 --THDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362 + G+V P + +I L+I TE+S + N + + + + T + L Sbjct: 265 PIFSEAGIVFKILPEIRKINGEKKILLKIDTEISNFKLTSNYSSGSGAKQKNQTKTIITL 324 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +GG+ + GL ++ ++ + +P S IPI+G LF+ R N+E +I+I + Sbjct: 325 NNGGSTFIGGLKQNVTKETIKKVPFFSSIPIIGPLFKYKRNNKEVRDIYIEIEAVI 380 >gi|167573168|ref|ZP_02366042.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia oklahomensis C6786] Length = 577 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 41/269 (15%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---------------------------- 223 + ++ I E+ D+L+QIG S Sbjct: 309 RPRLIEIQAHIMEIDDDLLRQIGVDWRAHNSHGDIQTGMGAVTQNSYGSTSTGIGATAQN 368 Query: 224 ---------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + + G + ++AL+ + ++ A Sbjct: 369 SYANGQINPFFGTTTLPGNAIANAPPAGAAITAVVGDAAHYLMARVNALQSTSKVKIDAS 428 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQ 333 P + + A + + + ++ + + GV L P ++ G +++ Sbjct: 429 PLVATLDNSEAVMDNMTRFFVRVSGYTSAD--LYSIATGVSLRVLPLIVQDGSETRIKLN 486 Query: 334 TEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 V++ + + +P + +T + G ++++AG D G+P LSKIP Sbjct: 487 VHVTDGQLTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYSTDKRSNGVTGVPWLSKIP 546 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421 ++GALFR + E +P ++ P Sbjct: 547 LIGALFRYNSDEHSHMERVFLLSPRIIDP 575 >gi|257125412|ref|YP_003163526.1| type II and III secretion system protein [Leptotrichia buccalis C-1013-b] gi|257049351|gb|ACV38535.1| type II and III secretion system protein [Leptotrichia buccalis C-1013-b] Length = 400 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 124/311 (39%), Gaps = 40/311 (12%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 R++ + L F V + + ++ +G I++ +R ++ + Sbjct: 118 EYRNVKDITEKLNGFF---GFEVIGIDNKIIFNGDESKIEEMRRIIKSLD---------- 164 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADF 234 ++QV +K TI + ++ +++G SI ++ + + A F Sbjct: 165 ---------------KEKEQVIIKGTIIDTSSNLFERLGIDWSINSDNANATKDNLVAKF 209 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 VS FS G F + L+ IR A PTL + + + L Sbjct: 210 LNGEVSIASIFSKGGRFLGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVL 265 Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVNAG-D 347 KT T + G+V P + +I L+I TE+S + + Sbjct: 266 VGEKKTTKKDTEYVEPIFSEAGIVFKINPEIRKINGIKKILLKIDTEISNFKLTSSYNAS 325 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + + TT+ L +GG+ + GL +D ++ +P+LSKIPI+G LF+ R NRE Sbjct: 326 SGAKQKNQTKTTITLNNGGSTFIGGLKQDVSKETIRRVPVLSKIPIVGPLFKYRRTNREL 385 Query: 408 TEIFIAATPFL 418 +I+I + Sbjct: 386 RDIYIEIEAVI 396 >gi|189424524|ref|YP_001951701.1| type II and III secretion system protein [Geobacter lovleyi SZ] gi|189420783|gb|ACD95181.1| type II and III secretion system protein [Geobacter lovleyi SZ] Length = 769 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 62/405 (15%), Positives = 124/405 (30%), Gaps = 69/405 (17%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 + + T+ ++ ++ + L L D +R + + + Sbjct: 245 KILNETTVLIYPQSAEKTK-----QYQDMQLRTFHLNHLDAKKAANLIRTMLQVRRLYIN 299 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 ++ +V+ ++ +E + E +V L Sbjct: 300 EDANALVVRDTSDVTDVIEKILEAHDL-------------------------PEAEVVLD 334 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---------------- 243 V + E+ +G S G Sbjct: 335 VEVIEISDKNAHNVGLLLSNYDVQLGAFSPSNELLATTLKDTTSTTSTTVTTDATIKNLV 394 Query: 244 -DFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKT 297 FS+ + + + T L+ P + + + A F G + Sbjct: 395 KAFSINSFGGYVTVPNAQYNFGKTLTNGEVLSNPKIRVKNKEKAKFNVGTRVPITTTTMA 454 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------MPSY 351 + +T +V D GV ++ PT+ + +++ EVS + G + + Sbjct: 455 TTGTTSQVNVQYVDVGVKVNAEPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTI 514 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R DT + L G T V+ GL+ K+ I LL IP++G L NS+ + ++TE+ Sbjct: 515 GTRNLDTVLSLKDGETSVIGGLISHSNSDSKQKIFLLGDIPLIGPLLSNSKTDNDKTELI 574 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 +A TP LV+ V +F + + Sbjct: 575 LAITPRLVRGV-----------TVQPRKVTSFISGKEDDPSVTPP 608 >gi|289804850|ref|ZP_06535479.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 230 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 10/229 (4%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 + + V I +V + Q+G S G +F G + D Sbjct: 1 MIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTS 56 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +F L+ALE+++ L++P++ ++ A K + + G Sbjct: 57 NFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGS 114 Query: 315 VLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVL 370 +L TP +L+ +I L + + + + +P + + + L +G +++L Sbjct: 115 LLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLL 174 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G + + IPLL IP++G LFRN +V Sbjct: 175 GGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVV 223 >gi|167840250|ref|ZP_02466934.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 303 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 109/294 (37%), Gaps = 17/294 (5%) Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 I+ + ++++++ + + + L + + L + Sbjct: 19 IQADPRTNSILVRDVPEHMAQYPDLIALLDVKPRLIEIEARIIEIDDGALRQLGVDWR-- 76 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLD 252 + V + Q+S S P+ + G + S+ VL Sbjct: 77 ----AHNSHVDLQTGTGLTSQNSYANGSLNPTFGSISLSGNDSVGVPASPLGLSLTAVLG 132 Query: 253 RFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ALE + RT A P +T + A + Q + ++ + + Sbjct: 133 DAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSI 190 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 GV L P V+ G +I L ++ V + ++P + +T + G Sbjct: 191 STGVSLRVLPMVVEEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQA 249 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +++AG D + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 250 LLIAGYKVDARSNTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 303 >gi|294055468|ref|YP_003549126.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] gi|293614801|gb|ADE54956.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] Length = 906 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 106/323 (32%), Gaps = 95/323 (29%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS--------------------------ITGSSSGPS 227 QV ++ EV ++ L+++GF + + S Sbjct: 544 KQVEIEAKFLEVAQNDLEELGFDWTVGEGAQTIVDEFGAPVLDQFGNPTVAYQRNVSTQG 603 Query: 228 KSFAADFGGKFVSEGGDFS----------------------------VKGVLDRFSFETV 259 ++ A F S + + + F Sbjct: 604 RTLADAFSADTASSAINITDVFGNESSVSTQPPANPSTIDLAANAASLFTATGWSMFGAD 663 Query: 260 LH----ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------------- 301 ++ A+ R + ++ P +T +SG+ A+ T + Y Sbjct: 664 VNLAIRAIARQSGSDLMSAPKVTVLSGKRANITVAQELRYPESYGDIESTVSSNNNGGAA 723 Query: 302 -----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------- 347 + GV L TP V + I L ++ V+E V G Sbjct: 724 ISITAGTPEDFVVRNVGVELAVTPNVENDDTISLILEPRVTEFEGFVEYGGPSVALASGT 783 Query: 348 ---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P + R+ T V + G TIV+ GL +D+++ +++ +P+L IP LG LF Sbjct: 784 TVTVPAGFYQPVFSTREISTEVTIFDGATIVMGGLTRDEVKYIEDKVPVLGDIPALGRLF 843 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R+ R++ + I T +V P Sbjct: 844 RSEGETRQKRNLLIFVTANMVSP 866 >gi|167567958|ref|ZP_02360874.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia oklahomensis EO147] Length = 577 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 41/269 (15%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---------------------------- 223 + ++ I E+ D+L+QIG S Sbjct: 309 RPRLIEIQAHIMEIDDDLLRQIGVDWRAHNSHGDIQTGMGAVTQNSYGSTSTGIGATAQN 368 Query: 224 ---------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + + G + ++AL+ + ++ A Sbjct: 369 SYANGQINPFFGTTTLPGNAIANAPPAGAAITAVVGDAARYLMARVNALQSTSKVKIDAS 428 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQ 333 P + + A + + + ++ + + GV L P ++ G +++ Sbjct: 429 PLVATLDNSEAVMDNMTRFFVRVSGYTSAD--LYSIATGVSLRVLPLIVQDGSETRIKLN 486 Query: 334 TEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 V++ + + +P + +T + G ++++AG D G+P LSKIP Sbjct: 487 VHVTDGQLTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYSTDKRSNGVTGVPWLSKIP 546 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421 ++GALFR + E +P ++ P Sbjct: 547 LIGALFRYNSDEHSHMERVFLLSPRIIDP 575 >gi|257092071|ref|YP_003165712.1| type II and III secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044595|gb|ACV33783.1| type II and III secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 770 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 38/274 (13%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-GGDFSVKGVL 251 QV L++ I EVR D + F G+S + + G+ Sbjct: 335 PRQVLLEMKILEVRLDNGFRSVFDIGFAGTSKSTGPLPVGVLPTTVPDQYARNAGTTGMF 394 Query: 252 D------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 D S L + ++ L+ P L A + A G + + + Sbjct: 395 DIEQDATMLWQYMSKSLSLRFQLLAQENKLKVLSSPMLVAANNHPARLFIGDERVLTVGA 454 Query: 300 SSTGAT------------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PV 340 SS T D G L P + + L I + S Sbjct: 455 SSQSITGTTGATNTQITVETERRDVGQTLSILPRINGDRSVTLTIDQDSSTVRLRDGTIP 514 Query: 341 IGVNAGDMPSYRVRKADT-----TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 I G + + + T T G T+ + G+++D +++ +E +P+L IP+LG Sbjct: 515 IATGTGGVVYFPIDTVSTANLQVTAHAQDGMTVAIGGMIRDSLERDEEKVPVLGDIPVLG 574 Query: 396 ALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 LF+ ++I + TP +++ P+ ++ Sbjct: 575 YLFKRDVRASIRSQIVLLITPRVLESPLEANSVA 608 >gi|171915747|ref|ZP_02931217.1| putative type III secretion protein YscC [Verrucomicrobium spinosum DSM 4136] Length = 650 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 27/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------------SITG 221 +++ +L++ + + I +V K G + S Sbjct: 306 DELIQMLDVPTNA-IEITAAIVDVDTTNGKDFGMEFLGNYTAKDGNKYRFGFEADRSQFD 364 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV--LHALERATAIRTLAEPTLTA 279 P ++ + G + GG +V ++ F+ + L ALE ++ P++ Sbjct: 365 GGEAPPETTPSFVDGTNLVRGGGLNVAALIGGEGFDLLTRLRALETKGGADIVSSPSVLT 424 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSE 338 + A + + + + GV TP V+ G+ R+ ++++ Sbjct: 425 MENVEA--VVRTEETFYVRVAGDQEVDLFDVTAGVQFRVTPNLVVENGKRSFRLHLDITD 482 Query: 339 PV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + D+P R T +P T+++ G + + IP+L IP++G Sbjct: 483 GNFEDTSVDDIPGTRESAITTQAIVPESKTLLVGGYFIERKTKNTRQIPILGDIPVVGYA 542 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F+ E + F TP +V Sbjct: 543 FKRKEVLNERKQRFFFITPKVVD 565 >gi|32307038|gb|AAP79008.1| MxiD [Shigella flexneri] Length = 566 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164 G + +L + NI ++ D+ V + ++ Sbjct: 209 GVATVVERLLNNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268 Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 ET N + ++ L++A + L + I ++ + L +G Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + SF FG F + LD F + AL + ++ P + Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335 A F + V +S+ YG +++ P S G+I + + E Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSQGQIEMSLTIEDGTGNSQ 436 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + N +P K T +P G ++++ G + IP LS IP++G Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 +F+ N P +K Sbjct: 497 NVFKYKTRNISNIVRVFLIQPREIK 521 >gi|261884996|ref|ZP_06009035.1| type II and III secretion system protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 203 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 17/187 (9%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT---------- 308 VL+ LE + ++ P + ++ +A T G Y+ +T + T Sbjct: 4 VLNFLETKGRTKVVSSPKIMTMNNHNALITVGDNINYRVQEDTTNTNTQTAVSNTTYTQY 63 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-------GDMPSYRVRKADTTVE 361 + G++L+ P V GRI LRI +S G + P +K T V+ Sbjct: 64 SIFIGILLNLLPEVSDDGRIMLRINPSLSSFKYGDDNRRQANIREIAPDTLQKKLSTVVQ 123 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + SG TI+L GL+ + + +P+L IP+ G LF++++ + TE+ TP ++ Sbjct: 124 VNSGDTIILGGLIGETKGKDNTSVPVLGDIPLFGNLFKSTKDSVSTTELIFIITPKVINN 183 Query: 422 VAMRDLS 428 + + Sbjct: 184 ETPKQIR 190 >gi|167573316|ref|ZP_02366190.1| Type III secretion system protein [Burkholderia oklahomensis C6786] Length = 302 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 103/270 (38%), Gaps = 22/270 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++ L++ + Q+ L + I ++R+ L Q+G ++ G F G Sbjct: 30 QDMEALIRSLDV-EKRQIELSLWIIDIRKSRLDQLGIDWQGALNAPGIGVGFNNRGGNVT 88 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 LD F + AL + ++ P + A+F S K + Sbjct: 89 -----------TLDGTKFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLI 137 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTE-------VSEPVIGVNAGDMPS 350 A + YG +++ P + ++ + + E S+ I ++ MP Sbjct: 138 --GERAVQLEHVTYGTLVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGRIVIDNNTMPL 195 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + +T +P ++++ G +DD+ + IP L+ IP++G LFR E+ Sbjct: 196 VNRTEINTVARVPHEMSLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFRGHSDRHEQVVR 255 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 P L++ A +P + D+A Sbjct: 256 VFLIQPKLLRAGAAWPDGQPWESGDPADNA 285 >gi|238898588|ref|YP_002924269.1| type III outer membrane secretin precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466347|gb|ACQ68121.1| type III outer membrane secretin precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 553 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 74/249 (29%), Gaps = 19/249 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + L V I ++ ++ L Q+G +F G + + + Sbjct: 306 IELSVWIIDLDKNTLDQMGVDWK-------GGMNFKNQLGVRLNAGTSTL------EGGQ 352 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + AL R ++ P + A F + + + + YG + Sbjct: 353 FIASVMALSRQKKANVVSRPMVLTQENIPAVFDNNRTFYSELLGEKN--VKLENVTYGTL 410 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAG 372 + P +I + I E V +P T +P G ++++ G Sbjct: 411 VSVLPRFTENNQIEMMINIEDGNEVSQSDHETKTSLPKVGRTNISTIARVPKGKSLLVGG 470 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRDLSRPD 431 +D IP L +P++G LF + P + P+ Sbjct: 471 YTRDANTSENTKIPGLGSLPLIGKLFSYENKSISSIVRVFLIQPREINAPLNRDASDLAS 530 Query: 432 DHYSVEDDA 440 D D Sbjct: 531 DIIKSSSDI 539 >gi|166363715|ref|YP_001655988.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843] gi|166086088|dbj|BAG00796.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843] Length = 701 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 15/187 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310 F L A + + L +P+L GQ A+ + L + + V T Sbjct: 490 FLMTLQASIQTGNAKILTDPSLVVQEGQQATVKLTQKVLESVQTEVDPLSGVRTITPVLA 549 Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV--------NAGDMPSYRVRKADT-TV 360 D G+ L V G I L + V+ P + + + R+ + V Sbjct: 550 DAGLTLAVNVDQVDDNGFISLSVSPTVASPGTPIEFNSGGINSGNTLTPLIRRELTSGLV 609 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G +++L+G++++ Q + +P+L IPILGALFR+ +E+ I TP +++ Sbjct: 610 RLRDGQSLILSGIIQETQQSSETKVPILGDIPILGALFRSRTNQNNRSEVIILLTPKIIE 669 Query: 421 PVAMRDL 427 A L Sbjct: 670 DTATSTL 676 >gi|223938170|ref|ZP_03630067.1| peptidase M56 BlaR1 [bacterium Ellin514] gi|223893214|gb|EEF59678.1| peptidase M56 BlaR1 [bacterium Ellin514] Length = 1633 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 70/366 (19%), Positives = 145/366 (39%), Gaps = 16/366 (4%) Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 RT+ + G N +++ G +L + + + I V ++ Sbjct: 281 ARTLAALEELRGSQNQLVMAAAGAPLLQRIRRLLGQAERNPS--HQAWPLAGIIVLLLVA 338 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVT 201 + + Q +S+T +GR AN+ V + ++ G Q+ ++ Sbjct: 339 ALTIGLRSSRAVADQTQETISKTNKLVTGRMLPANARKTFVQSDKSLTGAQLPQIVVQSK 398 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 EV F +I + + A + VS + G+L ++ + Sbjct: 399 FFEVDEKD-----FPKAIFNLPAVSNAVCAIATPWQPVSAPKEQCFTGMLTGPQYQAAVK 453 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 LE A+ I L P++ SG+ A + L + +++++ + + +G VL PT Sbjct: 454 QLEMASCIDMLTAPSVITQSGRQAQIQAVD--LIEILTNASPSAAKMQLPFGPVLDVLPT 511 Query: 322 VLSPGR-IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 V + L V+ + + +P + + T + L G T+V+ GL+ + I Sbjct: 512 VTPDKLGVQLTGIATVTMLLDAPSVV-LPRIQFTQLSTEMTLKDGQTLVMGGLMPETITI 570 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM---RDLSRPDDHYSVE 437 +K+ +P+L+ IP+ G LFR+ ++ + + TP L+ P D ++P + + Sbjct: 571 VKDRVPVLADIPLAGRLFRSGSTSKSRKYLIVFVTPTLINPDGSRYHADDTKPTEATVLP 630 Query: 438 DDAKAF 443 + F Sbjct: 631 PETLLF 636 Score = 97.9 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 58/348 (16%), Positives = 111/348 (31%), Gaps = 62/348 (17%) Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 DG Q + ++ + L+ +R F +NI + V + ++ V Sbjct: 1300 YPKDGTQPVTNLVVHD---RGLQTAIRSFFEKANIDFSPTNPVNVGKSVFYNELNATLMV 1356 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ--IGFQHSI 219 ++ L + L Q+ +K E+ Q +G Sbjct: 1357 RTTQEEL-------------DLIQKELARITPPQINIKARFVEMDETAGSQITLGESMRG 1403 Query: 220 TGSSSGPSKS------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 S + S + ++ V+ GVL ++ + LERA + L Sbjct: 1404 IDSKTNSSMTQVTTPKVSSSGSFPPVTNALALQFTGVLTPEQYKEAITRLERADGVDLLT 1463 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPG 326 P +T SG+ A + T ++ T S +G VL P V + Sbjct: 1464 APDVTTESGRRAQIQAVDIKTIITGLTTVYTNGTATNMLSTQNLPFGPVLDVIPKVSADD 1523 Query: 327 -RIGLRIQTEVSEPVI------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 I + + V+E V +P +R+R+ ++ + G TI+L G+ Sbjct: 1524 SSIEMNLVASVTEFVGYDDPKKLAGQKRTDVQIPLPHFRLRQLTSSASVADGHTIILGGV 1583 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 ++ + R + + + TP L+ P Sbjct: 1584 EQNTPGK------------------RGKEKPGKRKTLLVFVTPTLINP 1613 >gi|85059260|ref|YP_454962.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] gi|84779780|dbj|BAE74557.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 494 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 94/268 (35%), Gaps = 20/268 (7%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 D ++ + + + + ++ + + + V I +V + ++G Sbjct: 235 ADPRQNAVIVRDYAANMAGYRQLIAALDQ--------RPQMIEIAVMIIDVDVGDINKLG 286 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S S G SF +D + + + F L+ LE+ L++ Sbjct: 287 IDWSGAMSLGGSGFSFNSD------GDIRGGFSSVISNTNDFMVRLNVLEQRAHAYILSQ 340 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQ 333 P++ ++ A K + + G +L TP ++ G+ + + Sbjct: 341 PSVVTLNNIQAVLDKNVTFYTKL--QGDKFAKLESVTTGSLLRVTPRLMEDQGKQNIMLS 398 Query: 334 TEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + + +P + + + L G +++L G +D +Q ++ IPLL Sbjct: 399 LNIQDGQQTSPLSATDPLPQVQNSEIASQATLRPGQSLLLGGFQQDKQKQGQKKIPLLGD 458 Query: 391 IPILGALFRNSRFNREETEIFIAATPFL 418 IP+LG LFR+S + Sbjct: 459 IPLLGHLFRSSIDETHSVMRLFLIKATV 486 >gi|45751679|emb|CAF21323.1| InvG protein [Burkholderia mallei] Length = 278 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 106/284 (37%), Gaps = 22/284 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 7 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 66 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 114 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 172 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP L+ IP++G LFR E+ P L++ A Sbjct: 233 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 276 >gi|167566206|ref|ZP_02359122.1| Type III secretion system protein [Burkholderia oklahomensis EO147] Length = 315 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 57/300 (19%), Positives = 110/300 (36%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 13 GFALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 71 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 72 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 120 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + A + YG +++ P + + Sbjct: 121 ATVISRPIVLTQENVPATFDSNQTFYAKLI--GERAVQLERVTYGTLVNVLPRLTRDASQ 178 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 179 VEMIVDIEDGNTDGATSDGRIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 238 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 239 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 298 >gi|254255049|ref|ZP_04948366.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] gi|124899694|gb|EAY71537.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] Length = 552 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 66/327 (20%), Positives = 108/327 (33%), Gaps = 41/327 (12%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ---RAVELSETFLSQSGRNQY 176 I + ++R I + N VE + A++ + Sbjct: 203 IPGIATLVQRAIGEENAIVETKRLDASASKEAVNPAAADGTMPALDAAIGPPPTRPSGAV 262 Query: 177 ANSSSKKV-------MNLLNIAG-EDQV-----------------TLKVTIAEVRRDILK 211 SSS V N L + G +QV L + I ++ R+ L Sbjct: 263 QTSSSHGVRIVAYPETNSLMVKGTPEQVKFVRQLVQALDEEKRHIELALWIIDLEREALD 322 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 Q+G T S G S S + + GG F + AL R + Sbjct: 323 QLGVNWRGTVSLGGMSASLNMNNNTSLSTVGG----------TEFIASVTALARDRRAQI 372 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P + A F S K V A + YG +++ P + I L Sbjct: 373 VSRPVVLTQENTPAVFDSSQTFYAKLV--GERAVDLKEVTYGTMVNVVPRFNAKDDIELA 430 Query: 332 IQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + E S V+ MP+ K T +P G ++++ G + + + E IP L Sbjct: 431 LNIEDGSAKSSNVDQDPMPTVNRTKISTVARVPKGKSLLVGGYTRGETGDVVEKIPGLGS 490 Query: 391 IPILGALFRNSRFNREETEIFIAATPF 417 +P +G LFR +T +P Sbjct: 491 LPFIGGLFRFKTEVNRDTVRVFLISPR 517 >gi|167573369|ref|ZP_02366243.1| type II/III secretion system protein [Burkholderia oklahomensis C6786] Length = 607 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 12/226 (5%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK------FVSEGGDFSVKGVLDRFSFET 258 + + Q+S S P+ + G G + Sbjct: 385 IDLQTGTGLTAQNSYANGSLNPTFGSISLSGNGDSVGVPASPLGLSLTAVLGDAGRYLLA 444 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + ++ + + GV L Sbjct: 445 RINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRV 502 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P V+ G +I L ++ V + ++P + +T + G +++AG Sbjct: 503 LPMVVEEGGHTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 561 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P+LSK+P++GALFR++ TE TP +++P Sbjct: 562 DSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIEP 607 >gi|146305065|ref|YP_001185530.1| YscC/HrcC family type III secretion outer membrane protein [Pseudomonas mendocina ymp] gi|145573266|gb|ABP82798.1| type III secretion outer membrane pore, YscC/HrcC family [Pseudomonas mendocina ymp] Length = 696 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 54/321 (16%), Positives = 104/321 (32%), Gaps = 20/321 (6%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R + + ++ L++ + + + I ++ R+ L ++ + + Sbjct: 282 RVSADVRNNAVLIYDLPERKAIYQGLIQQLDVP-RNLIEIDAVILDIDRNELAELSSRWA 340 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + GG + E G S + D F L ALE A + P++ Sbjct: 341 F---------NSGSVSGGANLFEPGTTSTLFIQDAGRFAAELRALEGTGAASIMGNPSIL 391 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + Q A + + ++ G L P L+ G ++ L + E Sbjct: 392 TLENQPAVIDFSRTEYLTAL--AERVANIQPITAGTSLQVIPRSLNQGSRSQVQLIVDIE 449 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + + + + PS R T + G++V+ G + IPLL IP++G Sbjct: 450 DGQIIESNISEEQPSVRRGNVSTQAVIAEHGSLVIGGFHSLEANDRINKIPLLGDIPVIG 509 Query: 396 A-LFRNSRFNREETEIFIAATPFL----VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 LF++ E TP L V P P + + Sbjct: 510 KLLFQSRNREFNRRERLFILTPRLIGDQVNPARYVQHGNPHNLDRQLREIDERRRGTERP 569 Query: 451 IYGPKEASEVEGQNYKGAIGF 471 G E + + + GF Sbjct: 570 SRGDIEHAFTQLLDGIHPSGF 590 >gi|167577430|ref|ZP_02370304.1| type III secretion system protein BsaO [Burkholderia thailandensis TXDOH] Length = 339 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 112/302 (37%), Gaps = 22/302 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + G+ D RAV +T + ++ L++ + Q+ L + I ++R Sbjct: 35 VGGVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIR 93 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L Q+G ++ G F G LD F + AL + Sbjct: 94 KSRLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQT 142 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP- 325 ++ P + A+F S K + T + YG +++ P + Sbjct: 143 GDATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDA 200 Query: 326 GRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 ++ + + E S+ I ++ MP + +T +P ++++ G +DD+ Sbjct: 201 SQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDV 260 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 + IP L+ IP++G LFR E+ P L++ A +P + D Sbjct: 261 TRRTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPAD 320 Query: 439 DA 440 +A Sbjct: 321 NA 322 >gi|282890886|ref|ZP_06299403.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499240|gb|EFB41542.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus] Length = 956 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 61/368 (16%), Positives = 119/368 (32%), Gaps = 73/368 (19%) Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQR 159 L G + LI + L + +A N ++ S++++ G V +I+ + Sbjct: 555 LQYRKGADIQQALSLIGASLNRLGQSNDDLVATINTVQWLESSNSLIFTGTVESIRKLEE 614 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + +T L QV +++ I ++ D Q G Sbjct: 615 LIAELDTPL-------------------------RQVFIEMLILDISLDDSLQYGVNWGT 649 Query: 220 TGSSSGPSKSFAADFGGKFVSEG------------------------------------G 243 + S A + G Sbjct: 650 RFGGGNVAGSQAFLSDASTLPAALDTTGIVNNRGITTGQTLLPNASGLARLPGYNLGVLG 709 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 G L S ++ A+ T + P + +A G ++T S S Sbjct: 710 QNVSLGNLTFDSIGALVKAIHDKTNTNIIMNPKILTEDNVTAEIFVGFNTPFQTQSISNI 769 Query: 304 -----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYR 352 A + + G TP + + + L I+ EVS + + P+ R Sbjct: 770 GGTPIANNFEFRNVGTTFKVTPFLGNNDIVTLEIREEVSSVASTTTSDVLNTALPGPTTR 829 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + + T V +P +VL+G+++D+ + + +P L +PI+GA F + + + I I Sbjct: 830 LSRTTTRVHVPDKYFLVLSGMMQDEDTRRRVNVPCLGGLPIIGAAFSDKTVSDAKRNIMI 889 Query: 413 AATPFLVK 420 P ++ Sbjct: 890 FIRPEIID 897 >gi|15042148|gb|AAK81929.1|AF292566_13 RscC [Pseudomonas fluorescens] Length = 713 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 46/326 (14%), Positives = 92/326 (28%), Gaps = 20/326 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 ++ L L + +N + + + R Sbjct: 253 TPNVPRLGNPLLGQMLGANGNAGQLDTGPTVTPRAPVSKSRIRVEADVRNNAVLIYDLPE 312 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 + + ++ L++A + + + I ++ R L++ G S + A Sbjct: 313 RQAMYRDLITQLDVARKL-IEIDAIILDIERTQLREFGVNWGFQNSRFRGGVNMAPGTSS 371 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + D + ++ P++ + Q A Sbjct: 372 QVSIDHRDRFYADMPSTGG----------QGPATMVSNPSVLTLENQPAVIDFNRTQYIS 421 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VT G L P V + +I L + E D V Sbjct: 422 PGRDYATILPVT---VGTSLQVVPRVTTGRGVHQIHLVVDIEDGNLDETNPERDPNHLDV 478 Query: 354 RK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEI 410 R+ T + ++V+ G D ++ IPLL IP+LG L ++ + E Sbjct: 479 RRGKVSTQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKTLVSSTERHNNRRER 538 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSV 436 TP ++ P D + Sbjct: 539 LFILTPRVIGDQDDPSRYLPQDDQAE 564 >gi|53716218|ref|YP_106182.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|124381659|ref|YP_001025783.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] gi|126446314|ref|YP_001077867.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|254201058|ref|ZP_04907423.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei FMH] gi|254205023|ref|ZP_04911376.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei JHU] gi|254359145|ref|ZP_04975417.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei 2002721280] gi|52422188|gb|AAU45758.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|126239168|gb|ABO02280.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|147748670|gb|EDK55745.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei FMH] gi|147754609|gb|EDK61673.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei JHU] gi|148028332|gb|EDK86292.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei 2002721280] gi|261826429|gb|ABM99750.2| type II/III secretion system protein [Burkholderia mallei NCTC 10229] Length = 599 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ALE + RT A P +T + A + Q + ++ Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGCTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599 >gi|254175910|ref|ZP_04882568.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|160696952|gb|EDP86922.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] Length = 599 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ALE + RT A P +T + A + Q + ++ Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGCTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599 >gi|187734437|ref|YP_001883208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC 3083-94] gi|187426933|gb|ACD06208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC 3083-94] Length = 566 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164 G + +L + NI ++ D+ V + ++ Sbjct: 209 GVATVVERLLNNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268 Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 ET N + ++ L++A + L + I ++ + L +G Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + SF FG F + LD F + AL + ++ P + Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335 A F + V +S+ YG +++ P S G+I + + E Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + N +P K T +P G ++++ G + IP LS IP++G Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 +F+ N P +K Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521 >gi|242316560|ref|ZP_04815576.1| general secretion pathway protein D [Burkholderia pseudomallei 1106b] gi|242139799|gb|EES26201.1| general secretion pathway protein D [Burkholderia pseudomallei 1106b] Length = 235 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 4/144 (2%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + GQ+ +G + +++ + D G+ LH P + G + L++ TE S Sbjct: 1 MVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAV 60 Query: 340 VIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V G N P++ R +TV +G IVL GL++D+ Q +PLL IP +G Sbjct: 61 VPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIG 120 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LFR+ R++T + + P ++ Sbjct: 121 QLFRSEGKTRQKTNLMVFLRPVII 144 >gi|94969024|ref|YP_591072.1| type II and III secretion system protein [Candidatus Koribacter versatilis Ellin345] gi|94551074|gb|ABF40998.1| type II and III secretion system protein [Candidatus Koribacter versatilis Ellin345] Length = 764 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 56/331 (16%), Positives = 121/331 (36%), Gaps = 23/331 (6%) Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + ++ ++ L T+R + + ++ +V+ G + Q+ ++ + Sbjct: 244 RTFYLSNLSQPTELQDLVNTIRTIVEVNRVQQLPTQGAIVVRGTPDQVALVQKLIDDIDK 303 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 + SK M L I ++ V++A L ++ +++G Sbjct: 304 ARPEVVVEVAVMQVSKTKMRNLGIQPPS--SISVSMA----SNLSSNNNNNNNNNNNNGN 357 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAIS 281 G + G + L+ +F + L + + P++ A+ Sbjct: 358 GNGNGTGTGTDNSNGGISLNDLAHLNATNFILTVPTATANFLFSDADTKLIQNPSIRAVD 417 Query: 282 GQSASFTSGGQHLYKTVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 GQ A+ G + T S G T D GV + TP + + + ++ Sbjct: 418 GQKATLKIGDRIPVATGSFQPGIGGVGINPLVNTQFNYIDVGVNIDITPRIHANNEVSMK 477 Query: 332 IQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + +VS + P+ RK + + L G +L G+L+ + + G+P LS Sbjct: 478 LVLDVSSVTGYQNIGGIQQPTIGQRKIEHEIRLKDGEINLLGGILQSEDDKTIAGLPYLS 537 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420 +IP+L F + ++E+ P +V+ Sbjct: 538 QIPLLRYFFSTDNKTKSDSEVVFVVIPHIVR 568 >gi|194435190|ref|ZP_03067420.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella dysenteriae 1012] gi|194416569|gb|EDX32708.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella dysenteriae 1012] Length = 566 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164 G + +L + NI ++ D+ V + ++ Sbjct: 209 GVATVVERLLNNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268 Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 ET N + ++ L++A + L + I ++ + L +G Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + SF FG F + LD F + AL + ++ P + Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335 A F + V +S+ YG +++ P S G+I + + E Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + N +P K T +P G ++++ G + IP LS IP++G Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 +F+ N P +K Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521 >gi|53722615|ref|YP_111600.1| type III secretion system protein [Burkholderia pseudomallei K96243] gi|52213029|emb|CAH39067.1| putative type III secretion system protein [Burkholderia pseudomallei K96243] Length = 601 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ALE + RT A P +T + A + Q + ++ Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|76819172|ref|YP_335807.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1710b] gi|226198470|ref|ZP_03794038.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|254264542|ref|ZP_04955407.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] gi|254301393|ref|ZP_04968837.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|76583645|gb|ABA53119.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710b] gi|157811287|gb|EDO88457.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|225929527|gb|EEH25546.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|254215544|gb|EET04929.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] Length = 601 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ALE + RT A P +T + A + Q + ++ Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|126457187|ref|YP_001076198.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1106a] gi|242313849|ref|ZP_04812866.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] gi|126230955|gb|ABN94368.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106a] gi|242137088|gb|EES23491.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] Length = 599 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ALE + RT A P +T + A + Q + ++ Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599 >gi|217425129|ref|ZP_03456624.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] gi|217391734|gb|EEC31761.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] Length = 601 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ALE + RT A P +T + A + Q + ++ Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|237508433|ref|ZP_04521148.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] gi|235000638|gb|EEP50062.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] Length = 601 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ALE + RT A P +T + A + Q + ++ Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|82524589|ref|YP_406184.1| MxiD [Shigella dysenteriae Sd197] gi|81243987|gb|ABB64696.1| MxiD [Shigella dysenteriae Sd197] Length = 566 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 103/325 (31%), Gaps = 22/325 (6%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164 G + +L + NI ++ D V + ++ Sbjct: 209 GVATVVERLLNNGKALSNRQAKNDLMPPFNITQKVSEDGNDFSFSSVTNNSILEDVSLIA 268 Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 ET N + ++ L++A + L + I ++ + L +G Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + SF FG F + LD F + AL + ++ P + Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335 A F + V +S+ YG +++ P S G+I + + E Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSL 436 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + N +P K T +P G ++++ G + IP LS IP++G Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 +F+ N P +K Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521 >gi|126445193|ref|YP_001063243.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 668] gi|126224684|gb|ABN88189.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 668] Length = 601 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ALE + RT A P +T + A + Q + ++ Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|254185101|ref|ZP_04891690.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] gi|184215693|gb|EDU12674.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] Length = 601 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ALE + RT A P +T + A + Q + ++ Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|134281959|ref|ZP_01768665.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] gi|134246488|gb|EBA46576.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] Length = 601 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ALE + RT A P +T + A + Q + ++ Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|94985829|ref|YP_605193.1| type II and III secretion system protein [Deinococcus geothermalis DSM 11300] gi|94556110|gb|ABF46024.1| type IV pilus assembly protein PilQ [Deinococcus geothermalis DSM 11300] Length = 673 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 77/427 (18%), Positives = 147/427 (34%), Gaps = 40/427 (9%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV--PVDVQDVLVS 72 L S+ K+ P+ + VI ++ + +++ P VQ V Sbjct: 266 ALLSAQYPELKVTPVGQTGQLVITGPQNQLDAALALLAQVDRPAPAPQAGPQTVQRVF-- 323 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-LIERDIAHLEMTLRRFI 131 + + + G L +G ++ + D +T+ Sbjct: 324 -------QLVNASAEEVKATLEGTLARDLTPANGNAQTLANVPVNATDANGNPITVTVPT 376 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 S+ S+ + + L G + ++ V L + Sbjct: 377 TGSSAGQTANSNAQQPQQAAPNSNGATIIADKRTNTLIVRGTPEQVTQIAELVPQLDQV- 435 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 Q+ ++V I E+ + +G + S G F L Sbjct: 436 -VPQINVQVRIQEITETAARTLGLDWKVNFGGFNVSVGSGG--------LGATFDPTQSL 486 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQ----SASFTSGGQHLYKTVSSSTGATSV 307 F+ L ALE + + + +T SGQ SA+ T S G + Sbjct: 487 VGFNIFPTLQALENQGLTKRVYDGNITMQSGQRSLGSATNTQNASANAAASIKSGGRLEI 546 Query: 308 T----------THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRV 353 DYG+ L F P V G + LR++ +V+ + +P+ + Sbjct: 547 NIPSSSGNIEKQIDYGLNLDFFDPQVAPDGTVTLRVRGQVNNIAGTLPTTSVPNLLNFTN 606 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 +A +T+ SG T++++GLL + +G+P LS +P++GA F RE++++ + Sbjct: 607 SEAQSTITFKSGQTVLMSGLLGTTESRTNDGVPFLSSLPVIGAAFGKQTTRREQSQLLVI 666 Query: 414 ATPFLVK 420 T +VK Sbjct: 667 ITGSVVK 673 >gi|45751739|emb|CAF25120.1| InvG protein [Burkholderia pseudomallei] Length = 270 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 106/284 (37%), Gaps = 22/284 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 1 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 59 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 60 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 108 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 109 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 166 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 167 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 226 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP L+ IP++G LFR E+ P L++ A Sbjct: 227 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 270 >gi|254194240|ref|ZP_04900672.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei S13] gi|169650991|gb|EDS83684.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei S13] Length = 601 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ALE + RT A P +T + A + Q + ++ Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|254186924|ref|ZP_04893440.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|157934608|gb|EDO90278.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] Length = 599 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ALE + RT A P +T + A + Q + ++ Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599 >gi|332297951|ref|YP_004439873.1| type II and III secretion system protein [Treponema brennaborense DSM 12168] gi|332181054|gb|AEE16742.1| type II and III secretion system protein [Treponema brennaborense DSM 12168] Length = 667 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 93/252 (36%), Gaps = 15/252 (5%) Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 I + ++ G S++ S G + G +V G L F ++ Sbjct: 414 ILQYQKSSNLSWGITSSMSPLSPGNKTLVTGELGNLLNLSFDAITVFGYL----FAARIN 469 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVV 315 A + TL +SGQ +F + ++ G+V Sbjct: 470 AALSKNEANVFTDTTLYGVSGQKITFKNTNTFRYRDSNIDPQTGKPLYTGITREIISGLV 529 Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 L + G + + + VS+ + G+ P + T V+ SG +VL+GL Sbjct: 530 LEIDGWISGDGMVTMDVTASVSKRGVDVSTKTGNPPPTSEKIVTTQVKARSGEPVVLSGL 589 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 ++D +++G+P +S+IP+LG LF++ E+ E+ I P + + SR D Sbjct: 590 TQNDKTFVEQGVPFISRIPVLGNLFKSRDETEEKNEMVIYLVPHI---EETQTDSRGTDT 646 Query: 434 YSVEDDAKAFFF 445 + Sbjct: 647 RKRAAYEELVLN 658 >gi|45751675|emb|CAF21321.1| InvG protein [Burkholderia mallei NCTC 10247] Length = 272 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 106/285 (37%), Gaps = 22/285 (7%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 2 AGVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRK 60 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L Q+G ++ G F G LD F + AL + Sbjct: 61 SRLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTG 109 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326 ++ P + A+F S K + T + YG +++ P + G Sbjct: 110 DATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGS 167 Query: 327 RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 ++ + + E S+ I ++ MP + +T +P ++++ G +DD+ Sbjct: 168 QVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVT 227 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + IP L+ IP++G LFR E+ P L++ A Sbjct: 228 RRTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 272 >gi|167615580|ref|ZP_02384215.1| type III secretion system protein BsaO [Burkholderia thailandensis Bt4] Length = 351 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 49 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 107 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 108 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 156 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 157 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 214 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 215 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 274 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ +P++G LFR E+ P L++ A +P + D+A Sbjct: 275 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 334 >gi|254412671|ref|ZP_05026444.1| Bacterial type II and III secretion system protein [Microcoleus chthonoplastes PCC 7420] gi|196180406|gb|EDX75397.1| Bacterial type II and III secretion system protein [Microcoleus chthonoplastes PCC 7420] Length = 979 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 18/208 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH---- 310 F L A + + L +PT+ GQ+A+ + + S + A +TT Sbjct: 767 DFLAQLQAQITSGNAKILTDPTIVVQEGQTATVNLTQEVVGNIRSETESADGLTTRTVTA 826 Query: 311 ---DYGVVLH-FTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADT-T 359 + G++L + G + L + EV+ IG + + R+ + Sbjct: 827 EIREAGLILELIVDRIDDNGFVTLAVNPEVTSIGSVQNLSIGDDTNQIALLNTRELTSGQ 886 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T++L+G++++ + +P+L +PILGALFR++ + E+ + TP ++ Sbjct: 887 IRLRDGQTLILSGIIQESDRTTVRKVPILGDLPILGALFRSTERQNQRQEVIVLLTPQIL 946 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 +Y+ +A+ R Sbjct: 947 DDSERGAFGY---NYTPGREAQEVLQRR 971 >gi|320334143|ref|YP_004170854.1| type II and III secretion system protein [Deinococcus maricopensis DSM 21211] gi|319755432|gb|ADV67189.1| type II and III secretion system protein [Deinococcus maricopensis DSM 21211] Length = 676 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 79/428 (18%), Positives = 157/428 (36%), Gaps = 55/428 (12%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV-PVDVQDVL-VS 72 L + ++ P+ VI +I + +++ ++ Q P VQ V + Sbjct: 282 ALLGAQYPNLRVTPVGSTGQLVITGPQNQIEAALGLLAQVDRPVVAQSGPQVVQRVFQLV 341 Query: 73 DPTKADVVVHSPRTMY--LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 + +V T+ L G A G T Sbjct: 342 NAGADEVKATLEGTLQRDLTGDPASSAATTTSNTAGSTTSGAATTSPAQTGASATTAATT 401 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + I + ++++++ G + +++ + + L + Sbjct: 402 GNGATIISDKRTNSLIVRGT------QAQVTQIA-----------------ELIPQLDQV 438 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 Q+ ++V I E+ + +G + G A G + + F Sbjct: 439 --VPQINVQVRIQEINETAARTLGVDWNA---GFGNFVVRIAQTGLQAL-----FDPTRA 488 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQS--------------ASFTSGGQHLYK 296 L + L+ALE + + + ++T SGQ AS T + Sbjct: 489 LAGINLGATLNALETQNMTKRVYDGSVTMQSGQRSVGTAGGAQNASSGASATIKSGGRLE 548 Query: 297 TVSSSTGATSVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YR 352 S V DYGV L F P V G I LR++ +V++P + G +P+ + Sbjct: 549 VTIPSESGNIVRQIDYGVNLDFIDPQVAPDGTITLRVRGQVNQPASPITGGTLPNLLNFT 608 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +A TT+ SG T++L+GLL + + + G+P LS +P++G LF + ++ ++++ + Sbjct: 609 NSEAQTTITFKSGQTVLLSGLLGTNESRNRTGVPFLSSLPVIGGLFGTEQTSKTQSQLLV 668 Query: 413 AATPFLVK 420 T +V+ Sbjct: 669 VITGTVVR 676 >gi|256259410|gb|ACU65047.1| HrcC [Pseudomonas syringae pv. syringae] Length = 701 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 17/230 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + I +V R + ++ ++ + GG ++E G S V D+ Sbjct: 317 IEIDAIIVDVDRSQMDELSSNWGLSAGNFS---------GGANIAENGRSSTMFVQDQDK 367 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L ALE + + P++ + Q A + + V + G Sbjct: 368 FFAGLRALEGNGSATVIGNPSVLTLENQPAVIDFSQTEILEAV--GERVANFQPLTAGTS 425 Query: 316 LHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L P + I L + E + + PS R T + ++V+ Sbjct: 426 LQVIPRSITASGAKNQMIQLVVDIEDGQIEESNIRAEQPSVRRGNVSTQAVIAEKASLVV 485 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419 G + + + +P LS IPILG LF + E TP LV Sbjct: 486 GGFHVYENNERTKKVPYLSAIPILGKLLFTARERGQSNRERLFILTPRLV 535 >gi|13449092|ref|NP_085308.1| Type III secretion protein [Shigella flexneri 5a] gi|547951|sp|Q04641|MXID_SHIFL RecName: Full=Outer membrane protein mxiD; Flags: Precursor gi|13310640|gb|AAK18464.1|AF348706_153 Type III secretion protein [Shigella flexneri 5a] gi|47042|emb|CAA47644.1| MXID [Shigella flexneri] gi|12329089|emb|CAC05820.1| MxiD, outermembrane protein of the secretin family, component of the Mxi-Spa secretion machinery [Shigella flexneri] Length = 566 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164 G + +L + NI ++ D+ V + ++ Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268 Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 ET N + ++ L++A + L + I ++ + L +G Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + SF FG F + LD F + AL + ++ P + Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335 A F + V +S+ YG +++ P S G+I + + E Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + N +P K T +P G ++++ G + IP LS IP++G Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIISIPFLSSIPVIG 496 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 +F+ N P +K Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521 >gi|167003376|ref|ZP_02269162.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei PRL-20] gi|243061081|gb|EES43267.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei PRL-20] Length = 599 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 89/240 (37%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ALE + RT A P +T + A + Q + ++ Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGCTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P++GALFR++ +E F TP +++P Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERFFLVTPRVIEP 599 >gi|74314944|ref|YP_313362.1| MxiD [Shigella sonnei Ss046] gi|73858421|gb|AAZ91127.1| MxiD [Shigella sonnei Ss046] Length = 566 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164 G + +L + NI ++ D+ V + ++ Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268 Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 ET N + ++ L++A + L + I ++ + L +G Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + SF FG F + LD F + AL + ++ P + Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335 A F + V +S+ YG +++ P S G+I + + E Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + N +P K T +P G ++++ G + IP LS IP++G Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 +F+ N P +K Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521 >gi|2495097|sp|Q55293|MXID_SHISO RecName: Full=Outer membrane protein mxiD; Flags: Precursor gi|829072|dbj|BAA09154.1| ORF14 [Shigella sonnei] Length = 566 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164 G + +L + NI ++ D+ V + ++ Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268 Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 ET N + ++ L++A + L + I ++ + L +G Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + SF FG F + LD F + AL + ++ P + Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335 A F + V +S+ YG +++ P S G+I + + E Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + N +P K T +P G ++++ G + IP LS IP++G Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 +F+ N P +K Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521 >gi|333011815|gb|EGK31216.1| hypothetical protein SFK227_5449 [Shigella flexneri K-227] gi|333011862|gb|EGK31255.1| hypothetical protein SFK227_5390 [Shigella flexneri K-227] Length = 566 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 100/300 (33%), Gaps = 22/300 (7%) Query: 131 IADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS--ETFLSQSGRNQYANSSSKKVMNL 187 + NI ++ D+ V + ++ ET N + ++ Sbjct: 234 MPPFNITQKVSEDSNDFSFSSVTNSSVLEDVSLIAYPETNSILVKGNDQQIQIIRDIITQ 293 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L++A + L + I ++ + L +G + SF FG F + Sbjct: 294 LDVAKRH-IELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 LD F + AL + ++ P + A F + V +S+ Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360 YG +++ P S G+I + + E + N +P K T Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P G ++++ G + IP LS IP++G +F+ N P +K Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISNIVRVFLIQPREIK 521 >gi|83717709|ref|YP_438974.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|83651534|gb|ABC35598.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 605 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 11/225 (4%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLDRFS--FETV 259 V + Q+S + P+ + G + S+ VL Sbjct: 384 VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 443 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + ALE + RT A P +T + A + Q + ++ + + GV L Sbjct: 444 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVL 501 Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G +I L ++ V + ++P + +T + G +++AG D Sbjct: 502 PMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 560 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 561 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 605 >gi|332711134|ref|ZP_08431068.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L] gi|332350116|gb|EGJ29722.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L] Length = 810 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 16/227 (7%) Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLA 273 F G ++ P + D + +FS+ + + F L A ++ + L Sbjct: 557 FARPGFGRNNNPFQPGVTDVQRQDDGNEFEFSLPSLFEYPDKFLLTLQAQITSSNAKILT 616 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-------DYGVVLHF-TPTVLSP 325 +PTL GQ AS + L + V T + G+ L + Sbjct: 617 DPTLVIQEGQEASVKLVQEVLTSVTTDIDLDGGVATRTITPVIEEAGLTLTVNVDRIDDN 676 Query: 326 GRIGLRIQTEVSEPVIG------VNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDI 378 G I L ++ P ++ R+ + V L G T++L+G+++D Sbjct: 677 GFITLSTSPVITAPSGTQEFNSDNAQNEITFLSRRELSSGLVRLRDGQTLILSGIIQDTD 736 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + +P+L IP+LGALFR++ + +E+ I TP ++ Sbjct: 737 RTTVSKVPILGDIPLLGALFRSTNKQNQRSEVIILVTPQIMDDTDRN 783 >gi|257142080|ref|ZP_05590342.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 598 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 11/225 (4%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLDRFS--FETV 259 V + Q+S + P+ + G + S+ VL Sbjct: 377 VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 436 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + ALE + RT A P +T + A + Q + ++ + + GV L Sbjct: 437 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVL 494 Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G +I L ++ V + ++P + +T + G +++AG D Sbjct: 495 PMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 553 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 554 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 598 >gi|45751671|emb|CAF21319.1| InvG protein [Burkholderia thailandensis] Length = 285 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 22/284 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 6 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 64 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 65 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 113 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 114 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 171 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 172 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 231 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP L+ +P++G LFR E+ P L++ A Sbjct: 232 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 275 >gi|31983567|ref|NP_858278.1| outermembrane protein MxiD [Shigella flexneri 2a str. 301] gi|18462559|gb|AAL72331.1| MxiD, outermembrane protein of the secretin family, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|281603900|gb|ADA76883.1| MxiD, outermembrane protein of the secretin family, component of the Mxi-Spa secretion machinery [Shigella flexneri 2002017] gi|333003155|gb|EGK22704.1| hypothetical protein SFK218_2878 [Shigella flexneri K-218] gi|333020387|gb|EGK39651.1| hypothetical protein SFK304_1148 [Shigella flexneri K-304] Length = 566 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 56/325 (17%), Positives = 104/325 (32%), Gaps = 22/325 (6%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164 G + +L + NI ++ D+ V + ++ Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268 Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 ET N + ++ L+IA + L + I ++ + L +G Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDIAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + SF FG F + LD F + AL + ++ P + Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335 A F + V +S+ YG +++ P S G+I + + E Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + N +P K T +P G ++++ G + IP LS IP++G Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIISIPFLSSIPVIG 496 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 +F+ N P +K Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521 >gi|302185350|ref|ZP_07262023.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. syringae 642] Length = 690 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 17/230 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + I +V R + ++ ++ + GG ++E G S V D+ Sbjct: 306 IEIDAIIVDVDRSQMDELSSNWGLSAGNFS---------GGANIAENGRSSTMFVQDQDK 356 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L ALE + + P++ + Q A + + V + G Sbjct: 357 FFAGLRALEGNGSATVIGNPSVLTLENQPAVIDFSQTEILEAV--GERVANFQPLTAGTS 414 Query: 316 LHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L P + I L + E + + PS R T + ++V+ Sbjct: 415 LQVIPRSITASGAKNQMIQLVVDIEDGQIEESNIRAEQPSVRRGNVSTQAVIAEKASLVV 474 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419 G + + + +P LS IPILG LF + E TP LV Sbjct: 475 GGFHVYENNERTKKVPYLSAIPILGKLLFTARERGQSNRERLFILTPRLV 524 >gi|78779577|ref|YP_397689.1| Type II secretory pathway component PulD-like [Prochlorococcus marinus str. MIT 9312] gi|78713076|gb|ABB50253.1| Type II secretory pathway component PulD-like protein [Prochlorococcus marinus str. MIT 9312] Length = 556 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 79/250 (31%), Gaps = 28/250 (11%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + QV L V + +V + S P S + Sbjct: 288 KRQKQVALNVKVLDVNLSDKDSFSQSWFLPFGSGSPYIIT--------QSPNLKAGIGPD 339 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISG---------------QSASFTSGGQHLY 295 + L A + + LA PTL G Q Sbjct: 340 RLGKFVSSELTASIQKGTTKVLASPTLILNESGGSAGDGSSIGRRLANEGFVEVGDQVPV 399 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIG---VNAGDMPSY 351 + T G+ L + R + + V+ N G++ Sbjct: 400 NATFVEGSGCNFTYDLVGIKLGAKVLGIDRNRFVTFAMTPIVTGISGTQTITNCGEVNLL 459 Query: 352 RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+ DT V + +G T+VL G+++D + P+L +PI+G LFR++ + E+ Sbjct: 460 NTRRLDTGAVRIKNGETLVLTGVIQDSDIETLVKFPILGDLPIMGPLFRSTSKEVGKREL 519 Query: 411 FIAATPFLVK 420 + TP ++ Sbjct: 520 IVLVTPRIID 529 >gi|45751693|emb|CAF21330.1| InvG protein [Burkholderia thailandensis ATCC 700388] Length = 282 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 22/284 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 6 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 64 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 65 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 113 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 114 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 171 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 172 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 231 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP L+ +P++G LFR E+ P L++ A Sbjct: 232 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 275 >gi|167566263|ref|ZP_02359179.1| type II/III secretion system protein [Burkholderia oklahomensis EO147] Length = 311 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 12/226 (5%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK------FVSEGGDFSVKGVLDRFSFET 258 + + Q+S S P+ + G G + Sbjct: 89 IDLQTGTGLTAQNSYANGSLNPTFGSISLSGNGDSVGVPASPLGLSLTAVLGDAGRYLLA 148 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + ++ + + GV L Sbjct: 149 RINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRV 206 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P V+ G +I L ++ V + ++P + +T + G +++AG Sbjct: 207 LPMVVEEGGHTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 265 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P+LSK+P++GALFR++ TE TP +++P Sbjct: 266 DSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIEP 311 >gi|167577363|ref|ZP_02370237.1| type II/III secretion system protein [Burkholderia thailandensis TXDOH] Length = 605 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 87/240 (36%), Gaps = 30/240 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255 LKQ+G S + + + + + + Sbjct: 369 ALKQLGVDWRAHNSHFDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLS 428 Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + ALE + RT A P +T + A + Q + ++ Sbjct: 429 LTAVLGDAGRYLLARIDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 488 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + GV L P V+ G +I L ++ V + ++P + +T Sbjct: 489 --LYSISTGVSLRVLPMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAF 545 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +++AG D + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 546 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 605 >gi|255531011|ref|YP_003091383.1| type II and III secretion system protein [Pedobacter heparinus DSM 2366] gi|255343995|gb|ACU03321.1| type II and III secretion system protein [Pedobacter heparinus DSM 2366] Length = 655 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 94/244 (38%), Gaps = 18/244 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 V ++VT+ ++R+ + G + + S + + + + + + Sbjct: 410 PMVLIEVTLLDIRKGHTTKTGIEAGLADSVVRTRGTVLSGVDMTLGAGSINNLLGKIGSN 469 Query: 254 F---------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---- 300 +F L+ALE I P L ++G +A+ + G Y T + Sbjct: 470 SVFNIGKVTPNFYVKLNALEANNNIEIRQVPKLATLNGHTANLSIGTTRYYVTKTQNVFS 529 Query: 301 -----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + D + + +P V ++ L+I+ E+S+ + A P K Sbjct: 530 SVNTQTVFTEQFNKVDANLAIGISPVVSGDDQVTLKIKVEISDFIGTPPANAPPPTSTSK 589 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++ + + IVL G+ + + G+PLLS+IP+L +F + + + + Sbjct: 590 FESIIRAHNEDMIVLGGMERSEKSDSGSGVPLLSRIPVLKWIFSSREQTKSKVVTLVFIK 649 Query: 416 PFLV 419 P ++ Sbjct: 650 PTII 653 >gi|254491741|ref|ZP_05104920.1| Bacterial type II and III secretion system protein [Methylophaga thiooxidans DMS010] gi|224463219|gb|EEF79489.1| Bacterial type II and III secretion system protein [Methylophaga thiooxydans DMS010] Length = 743 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 105/279 (37%), Gaps = 31/279 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++++ ++I QV L++ I V F + S S+ A ++ G Sbjct: 307 QLIHSMDIPVP-QVMLEMRILSVILGEDFNSIFNFELQPSGGNQSQQPALLGNNALLNSG 365 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-- 300 + L LE +R L+ P + A + + A G + L Sbjct: 366 ---TFVYEFLNSRLRANLEFLEENNRVRVLSNPMIVASNHRQAELFIGAETLLTDGFEFF 422 Query: 301 ------------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------------V 336 S V D G+ L TP + + L I+ E + Sbjct: 423 PAIIDNGVVIQPSYVQAIVNREDIGITLRITPRINGDETVELLIEQENSTVNPGGGSVPI 482 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 ++ V + + + TV G T+ + GL++ + + +P+LS+IP+LG Sbjct: 483 TDGNGTVQNLPVDTVDTARLTGTVMAKDGLTVAVGGLIRTSKNKNERKVPVLSEIPVLGR 542 Query: 397 LFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434 +FR++ + +ETE + TP ++ P L + D+ + Sbjct: 543 IFRSTTESEQETETVLLITPRVMNVPEESEKLRQTDNRF 581 >gi|886477|emb|CAA90274.1| SepC [Escherichia coli] Length = 512 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 96/247 (38%), Gaps = 23/247 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + V+I +V + L+Q+G S T ++ + +F + + + S + + Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQVNISSSVISNA 327 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F ++AL++ + + L++P++ ++ A K S S+ + G Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLRSITSG 385 Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358 +L TP +L L ++ + +P + + T Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G LA L K K+GIPLLS IP++G+LF ++ + Sbjct: 446 EATLSAGKVYYLADLSKIKKVPSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505 Query: 419 VKPVAMR 425 +K + Sbjct: 506 IKSASSE 512 >gi|257470110|ref|ZP_05634202.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC 49185] Length = 563 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 58/303 (19%), Positives = 114/303 (37%), Gaps = 30/303 (9%) Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 + + + +L + +S R + + + + + S+ +++ L+ Q Sbjct: 228 VNISADEVSAILK---NSFGESIRVSSIPKMNIIIIVGKKDSTVSAVRLVKELD-KEIQQ 283 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFG--GKFVSEGGDFSVK 248 V + I +V ++ + +GF + S + G S G VS G ++ Sbjct: 284 VRITSQILDVTDNLFENLGFDWLYSNSGSIEKNKGLDISLIGKAAVEGAGVSFGSGINLI 343 Query: 249 GVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + ++ L+ + A P++ G+ F + + T Sbjct: 344 RQFNDGNDILGLGINLLQATQDLVISAMPSILVADGEEGEFKITEEVIVGEEKKENDNTE 403 Query: 307 VT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGDMP 349 T + G++L P + G I L++ EVS G + Sbjct: 404 KTTYTPLFREAGIILKVKPLIKENGIIFLKVMIEVSNFRLKKSEQENISSDGGTYNSEGG 463 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 S R +TTV++ G TI + GL + +Q L IP L +P++ F+N RE T+ Sbjct: 464 SKIGRSIETTVKMKDGETIFIGGLKRAVVQNLDSRIPFLGTLPVINIFFKNQSVKREITD 523 Query: 410 IFI 412 I+I Sbjct: 524 IYI 526 >gi|325280193|ref|YP_004252735.1| type II and III secretion system protein [Odoribacter splanchnicus DSM 20712] gi|324312002|gb|ADY32555.1| type II and III secretion system protein [Odoribacter splanchnicus DSM 20712] Length = 628 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 61/353 (17%), Positives = 124/353 (35%), Gaps = 50/353 (14%) Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 +YLFG + + + E+ AD I ++ Sbjct: 307 NGVYLFGAQE-------QQKILRTTAVIPLRYRTVENVPELIPEALKADMQIGAFAEQNS 359 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 +++ G R I ++ V + + +T++V I + Sbjct: 360 LIVSGTSRQIASLRQFVGAIDRTVPL-------------------------ITIEVLIVD 394 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------RFS 255 ++ L++ G + + + + + + + Sbjct: 395 SKKSSLREAGITAGLGEKPVKTAGRLSPGVDFTLSAASVNRLIHSFNGFGSVNLGKVTPN 454 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--------- 306 F L ALE A + + P L+ ++G AS SG YK V ++ T Sbjct: 455 FYLTLKALEEAGTLELRSTPKLSTLNGHEASLKSGETRYYKEVQNNIMGTQNPIQSESYT 514 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + + + L P V S G+I L I+ E SE P R + + + + Sbjct: 515 WKSTEADLSLKIVPYVSSDGKITLTIEIEQSEFTAREEKDAPPGTATRSFKSRIRVDNED 574 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++L G+ ++ ++ G+PL+++IP+L LF S N+ + ++ I P ++ Sbjct: 575 MVLLGGIDRNTREKGSSGLPLIARIPVLKWLFGVSTDNKVDEKLSIFIKPTVI 627 >gi|167948310|ref|ZP_02535384.1| General secretion pathway protein D [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 251 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 58/214 (27%), Positives = 89/214 (41%), Gaps = 11/214 (5%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADFGGKFVS 240 + + L++ QV ++ TIAEV G + + G+ G + Sbjct: 39 EATIRKLDVP-PMQVLIEATIAEVSLTNNLSYGVRWFLQGNMGGSDKWQGGLNLPLPSGV 97 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G FS+ + + + L ++++ L+ P + + QSASF G Q T SS Sbjct: 98 SGSGFSLGILNSMDELKLFFNLLNAQSSVKFLSAPQIMVVDNQSASFRVGDQIPIITRSS 157 Query: 301 STGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSY 351 + T V D G +L TP V G + L I EVS+P V G Sbjct: 158 QSTTNPDAPIVTEVQFRDTGTLLTVTPRVNVGGMVTLEISQEVSKPGSAPAVGGGGNVPI 217 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 R D+TV + SG TI+L GL+ + K+GI Sbjct: 218 AQRTVDSTVVVNSGQTIILGGLISETSNDTKDGI 251 >gi|45751689|emb|CAF21328.1| InvG protein [Burkholderia thailandensis] Length = 277 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 22/284 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 7 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 66 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 114 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 172 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP L+ +P++G LFR E+ P L++ A Sbjct: 233 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 276 >gi|167724326|ref|ZP_02407562.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei DM98] Length = 308 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%) Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + Q G+ + + G + S G G + ++ALE + Sbjct: 95 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 154 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326 RT A P +T + A + Q + ++ + + GV L P V+ G Sbjct: 155 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 212 Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L ++ V + ++P + +T + G +++AG D + G Sbjct: 213 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 271 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P+LSK+P++GALFR++ +E TP +++P Sbjct: 272 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 308 >gi|67639552|ref|ZP_00438400.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei GB8 horse 4] gi|238520110|gb|EEP83573.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei GB8 horse 4] Length = 380 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%) Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + Q G+ + + G + S G G + ++ALE + Sbjct: 167 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 226 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326 RT A P +T + A + Q + ++ + + GV L P V+ G Sbjct: 227 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 284 Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L ++ V + ++P + +T + G +++AG D + G Sbjct: 285 CTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 343 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P+LSK+P++GALFR++ +E TP +++P Sbjct: 344 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 380 >gi|167915591|ref|ZP_02502682.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 112] Length = 322 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%) Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + Q G+ + + G + S G G + ++ALE + Sbjct: 109 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 168 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326 RT A P +T + A + Q + ++ + + GV L P V+ G Sbjct: 169 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 226 Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L ++ V + ++P + +T + G +++AG D + G Sbjct: 227 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 285 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P+LSK+P++GALFR++ +E TP +++P Sbjct: 286 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 322 >gi|167907227|ref|ZP_02494432.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei NCTC 13177] Length = 327 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%) Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + Q G+ + + G + S G G + ++ALE + Sbjct: 114 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 173 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326 RT A P +T + A + Q + ++ + + GV L P V+ G Sbjct: 174 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 231 Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L ++ V + ++P + +T + G +++AG D + G Sbjct: 232 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 290 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P+LSK+P++GALFR++ +E TP +++P Sbjct: 291 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 327 >gi|323166425|gb|EFZ52190.1| hypothetical protein SS53G_3269 [Shigella sonnei 53G] Length = 476 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164 G + +L + NI ++ D+ V + ++ Sbjct: 119 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 178 Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 ET N + ++ L++A + L + I ++ + L +G Sbjct: 179 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 233 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + SF FG F + LD F + AL + ++ P + Sbjct: 234 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 288 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335 A F + V +S+ YG +++ P S G+I + + E Sbjct: 289 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 346 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + N +P K T +P G ++++ G + IP LS IP++G Sbjct: 347 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 406 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 +F+ N P +K Sbjct: 407 NVFKYKTSNISNIVRVFLIQPREIK 431 >gi|167820470|ref|ZP_02452150.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 91] gi|167828842|ref|ZP_02460313.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 9] Length = 315 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%) Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + Q G+ + + G + S G G + ++ALE + Sbjct: 102 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 161 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326 RT A P +T + A + Q + ++ + + GV L P V+ G Sbjct: 162 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 219 Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L ++ V + ++P + +T + G +++AG D + G Sbjct: 220 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 278 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P+LSK+P++GALFR++ +E TP +++P Sbjct: 279 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 315 >gi|197335747|ref|YP_002157088.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11] gi|197317237|gb|ACH66684.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11] Length = 562 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 75/429 (17%), Positives = 144/429 (33%), Gaps = 53/429 (12%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86 + I ++ + + + V Q VL V R Sbjct: 144 FQDIPVRHVLQLIADYNDFNLVVADSVTGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 199 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 G +I + + + + L ++ + +++ +V Sbjct: 200 ------VEGNVVLIAPKTELDAQEQQVLEQAQMASELAALSSEILSIKYAKASDIAELLV 253 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G + + T + K +++ L+I + QV ++ I V Sbjct: 254 GEGEITMLSSRGSITVDERTNSLLLRDLPENITVIKDIIDTLDIPIK-QVQIEARIVTVN 312 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRFSFETVLHA- 262 L ++G + IT ++ + + + V GG K + + L+ Sbjct: 313 EGNLDELGVRWGITNTNGSTTVGGSIESNLAAVGLYDGGGSDDKKSGNNSLPVDDFLNVN 372 Query: 263 ------------------------------LERATAIRTLAEPTLTAISGQSASFTSGGQ 292 L+ + ++ P L + + A G + Sbjct: 373 LGLANPAASSIAFQVAKLGSDLLLDLELSALQAESKAEIISSPRLITTNKKPAYIEQGTE 432 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350 Y SS+GATSV+ + L TP + R+ L + P V+ G+ + Sbjct: 433 IPYLEA-SSSGATSVSFKKAVLSLMVTPQITPDNRLVLDLTVTQDRPGQVVKTGTGEAVA 491 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ T V + +G T+VL G+ + + E +PLL +P+LGALFR S N + E+ Sbjct: 492 IDTQRIGTQVLVDNGETVVLGGIYQHSLSNSVEKVPLLGDLPLLGALFRRSSENIGKKEL 551 Query: 411 FIAATPFLV 419 I TP +V Sbjct: 552 LIFVTPKVV 560 >gi|167743291|ref|ZP_02416065.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 14] gi|167850302|ref|ZP_02475810.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei B7210] gi|167898903|ref|ZP_02486304.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 7894] Length = 318 Score = 124 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%) Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + Q G+ + + G + S G G + ++ALE + Sbjct: 105 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 164 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326 RT A P +T + A + Q + ++ + + GV L P V+ G Sbjct: 165 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 222 Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L ++ V + ++P + +T + G +++AG D + G Sbjct: 223 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 281 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P+LSK+P++GALFR++ +E TP +++P Sbjct: 282 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 318 >gi|312171371|emb|CBX79630.1| Type III secretory protein InvG [Erwinia amylovora ATCC BAA-2158] Length = 589 Score = 124 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 50/342 (14%), Positives = 116/342 (33%), Gaps = 33/342 (9%) Query: 94 VGQANVILIGHDGKQMLNLDILIERDI---AHLEMTLRRFIADSNIRVEM----VSDTVV 146 G A V+ + KQ + I + L+ A+ + + + Sbjct: 223 PGVATVLNQLLNNKQANSGRNTTAAQITVDNSTQQALQAASANQDGNFRPLPIFAATSQA 282 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS----KKVMNLLNIAGEDQVTLKVTI 202 G I +++ + + ++ + +++ ++I + Q+ L + I Sbjct: 283 ESGGNNDIAATEQNSVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIP-KQQIQLSLWI 341 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 +V +D + ++G + + +F + + F + A Sbjct: 342 IDVSKDDINELGVRWQGSAKVGNGGITFNTSSLTQA-------------NSIHFLADVSA 388 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 L + ++ P + A F + K + T +S+ YG ++ P + Sbjct: 389 LAQKGNAHVVSRPEILTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRL 446 Query: 323 LS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 I + + + ++ +P + T +P G ++++ G ++ Sbjct: 447 DQYQHEIEMILNIQDGGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRN 506 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +Q GIPLL IP +G LF S + ++ P L Sbjct: 507 QDEQHSLGIPLLRDIPYMGRLFDYSYVSHKKMVRLFLIQPRL 548 >gi|292487263|ref|YP_003530135.1| type III secretory protein InvG [Erwinia amylovora CFBP1430] gi|291552682|emb|CBA19727.1| Type III secretory protein InvG [Erwinia amylovora CFBP1430] Length = 589 Score = 124 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 50/342 (14%), Positives = 115/342 (33%), Gaps = 33/342 (9%) Query: 94 VGQANVILIGHDGKQMLNLDILIERDI---AHLEMTLRRFIADSNIRVEM----VSDTVV 146 G A V+ + KQ + I + L+ A+ + + + Sbjct: 223 PGVATVLNQLLNNKQANSGRNTTAAQITVDNSTQQALQAASANQDGNFRPLPIFAATSQA 282 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS----KKVMNLLNIAGEDQVTLKVTI 202 G I ++ + + ++ + +++ ++I + Q+ L + I Sbjct: 283 ESGGNNDIAAIEQNSVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIP-KQQIQLSLWI 341 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 +V +D + ++G + + +F + + F + A Sbjct: 342 IDVSKDDINELGVRWQGSAKVGNGGITFNTSSLTQA-------------NSIHFLADVSA 388 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 L + ++ P + A F + K + T +S+ YG ++ P + Sbjct: 389 LAQKGNAHVVSRPEILTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRL 446 Query: 323 LS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 I + + + ++ +P + T +P G ++++ G ++ Sbjct: 447 DQYQHEIEMILNIQDGGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRN 506 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +Q GIPLL IP +G LF S + ++ P L Sbjct: 507 QDEQHSLGIPLLRDIPYMGRLFDYSYVSHKKMVRLFLIQPRL 548 >gi|218440223|ref|YP_002378552.1| type II and III secretion system protein [Cyanothece sp. PCC 7424] gi|218172951|gb|ACK71684.1| type II and III secretion system protein [Cyanothece sp. PCC 7424] Length = 734 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 14/179 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----H 310 F L A + + L +PTL GQ A+ + + + + V T Sbjct: 525 FLLTLEAQITSGNAKILTDPTLVVQEGQQATVKLTQKVVESVNTQVDPLSGVRTTTPVLQ 584 Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEV------SEPVIGVNAGDMPSYRVRKADTT--VE 361 D G+ L + G + L + + E G + + R+ T+ + Sbjct: 585 DAGLTLTVEVDRIDDNGFVSLFVSPTIAAPGASQEFESGDGTTNQLTLLTRRELTSGLIR 644 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G T++L+G++ + Q +P+L IPILGALFR + + +E+ + TP ++ Sbjct: 645 MRDGQTLILSGIISESEQTTVSKVPILGDIPILGALFRRTDNSGSRSEVIVLLTPKIID 703 >gi|167923433|ref|ZP_02510524.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei BCC215] Length = 319 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%) Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + Q G+ + + G + S G G + ++ALE + Sbjct: 106 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 165 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326 RT A P +T + A + Q + ++ + + GV L P V+ G Sbjct: 166 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 223 Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L ++ V + ++P + +T + G +++AG D + G Sbjct: 224 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 282 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P+LSK+P++GALFR++ +E TP +++P Sbjct: 283 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 319 >gi|292900365|ref|YP_003539734.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291200213|emb|CBJ47341.1| type III secretion system protein [Erwinia amylovora ATCC 49946] Length = 584 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 50/342 (14%), Positives = 115/342 (33%), Gaps = 33/342 (9%) Query: 94 VGQANVILIGHDGKQMLNLDILIERDI---AHLEMTLRRFIADSNIRVEM----VSDTVV 146 G A V+ + KQ + I + L+ A+ + + + Sbjct: 218 PGVATVLNQLLNNKQANSGRNTTAAQITVDNSTQQALQAASANQDGNFRPLPIFAATSQA 277 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS----KKVMNLLNIAGEDQVTLKVTI 202 G I ++ + + ++ + +++ ++I + Q+ L + I Sbjct: 278 ESGGNNDIAAIEQNSVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIP-KQQIQLSLWI 336 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 +V +D + ++G + + +F + + F + A Sbjct: 337 IDVSKDDINELGVRWQGSAKVGNGGITFNTSSLTQA-------------NSIHFLADVSA 383 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 L + ++ P + A F + K + T +S+ YG ++ P + Sbjct: 384 LAQKGNAHVVSRPEILTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRL 441 Query: 323 LS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 I + + + ++ +P + T +P G ++++ G ++ Sbjct: 442 DQYQHEIEMILNIQDGGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRN 501 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +Q GIPLL IP +G LF S + ++ P L Sbjct: 502 QDEQHSLGIPLLRDIPYMGRLFDYSYVSHKKMVRLFLIQPRL 543 >gi|188534044|ref|YP_001907841.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] gi|188029086|emb|CAO96954.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] Length = 592 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 109/283 (38%), Gaps = 26/283 (9%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIA 203 V + D + ++ T + + + ++ ++++ + Q+ L + I Sbjct: 283 VFSSERPSAADIEAVRIVAYTDTNSLLVMGSERQVNFVEDLVKAIDVS-KRQIQLSLWII 341 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 ++ + + ++G + S G + +F + F + AL Sbjct: 342 DISKKEINELGVKWSGAGKVNNTGVTFNTSSLTPE-------------NSIHFLADVSAL 388 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 ++ + + ++ P + A F + K + T +S+ YG ++ P L Sbjct: 389 VKSGSAQVISRPEILTQENVPALFDNNSSFYAKLIGERT--SSLEKITYGTMISVLPR-L 445 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 + G+ + + + + + +NA MP+ + T +P G ++++ G +D Sbjct: 446 ATGQQEIEMILNIHDGTVPLNAQGEPDKFDSMPTTSNTQISTEARVPLGHSLLVGGYSRD 505 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +Q G+PLL IP LG +F S ++ + P L+ Sbjct: 506 QDEQHNIGVPLLRDIPYLGRIFNYSYKSQTKMVRIFLIHPELL 548 >gi|253581772|ref|ZP_04858996.1| general secretion pathway protein D [Fusobacterium varium ATCC 27725] gi|251836121|gb|EES64658.1| general secretion pathway protein D [Fusobacterium varium ATCC 27725] Length = 563 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 90/245 (36%), Gaps = 26/245 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFAADFGGKFVSEGGDFS 246 QV + I +V ++ + +GF S S A VS G + Sbjct: 282 QQVRITSQILDVTDNLFETLGFDWLYNNVGSVEKNSGLDISLIGKAALDSAGVSFGSGIN 341 Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + + ++ L+ + A P++ G+ F + + Sbjct: 342 LVRQFNNGNDVLGLGINLLQATQDLVISAMPSILVADGEEGEFKITEEVIVGEEKKENDN 401 Query: 305 TSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGD 347 T T + G++L P + G I L++ EVS G + Sbjct: 402 TEKTTYTPLFREAGIILKVKPLIKENGTIFLKVMIEVSNFRLKKNEKENMISEGGTYNSE 461 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 S R +TTV++ G TI + GL + IQ L +P L +P++ F+N +E Sbjct: 462 GGSKIGRSIETTVKMRDGETIFIGGLKRAVIQNLDSQVPFLGTLPVINIFFKNQSVKKEI 521 Query: 408 TEIFI 412 T+I+I Sbjct: 522 TDIYI 526 >gi|308095376|ref|ZP_05905407.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466] gi|308086743|gb|EFO36438.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466] Length = 525 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 98/285 (34%), Gaps = 36/285 (12%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + + T + ++++ L+I + QV Sbjct: 243 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 301 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231 ++ I + + ++G + T + + + Sbjct: 302 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGVG 361 Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + F V + + L AL++ + ++ P L + + Sbjct: 362 IDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKP 421 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIG 342 A G + Y SS+GATSVT + L TP + R+ L + P V+ Sbjct: 422 AYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKVVK 480 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 G+ + ++ T V + +G T+VL G+ + I + +PL Sbjct: 481 TGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPL 525 >gi|167615514|ref|ZP_02384149.1| type II/III secretion system protein [Burkholderia thailandensis Bt4] Length = 309 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 11/225 (4%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLDRFS--FETV 259 V + Q+S + P+ + G + S+ VL Sbjct: 88 VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 147 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + ALE + RT A P +T + A + Q + ++ + + GV L Sbjct: 148 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVL 205 Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G +I L ++ V + ++P + +T + G +++AG D Sbjct: 206 PMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 264 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 265 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 309 >gi|172036496|ref|YP_001802997.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142] gi|171697950|gb|ACB50931.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142] Length = 778 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 15/221 (6%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G + + + ++ F + ++ + L Sbjct: 527 GEPDTFERTFDPETGIVTTTVTPGSIATATGALPSFFQFPRRFLAQIETNIQSGNAKILT 586 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHF-TPTVLSPGR 327 +PTL GQ A+ + + + + V T D G+ L + G Sbjct: 587 DPTLVVQEGQEATVKLTQKVIENITTQVDPLSGVRTTTPVLQDAGLTLAINVDKIDDNGY 646 Query: 328 IGLRIQTEVS--------EPVIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDI 378 I L + ++ + ++ R+ + + L G T++L+G++ + Sbjct: 647 INLTVSPTIAAVGDVQQFDSGSDGGTNNLFLLNRRELSSGLIRLRDGQTLILSGIISESD 706 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 Q +PLL IP+LGALFR+ + TE+ + TP ++ Sbjct: 707 QSTTSKVPLLGDIPLLGALFRSQTDTSQRTEVIVLLTPQIL 747 >gi|120555550|ref|YP_959901.1| type II and III secretion system protein [Marinobacter aquaeolei VT8] gi|120325399|gb|ABM19714.1| type II and III secretion system protein [Marinobacter aquaeolei VT8] Length = 733 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 64/335 (19%), Positives = 116/335 (34%), Gaps = 32/335 (9%) Query: 115 LIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 + L L + + G + + +S S Sbjct: 371 VQNTSAEELASLLSQLYGGNELAGSRSARSGESNTGTSNASDQETSTTRRAGSTVSVSTE 430 Query: 174 NQYANSSSKKVMNLLNIAGE---------------DQ---VTLKVTIAEVRRDILKQIGF 215 K N+L G Q V ++V +AEV + + +G Sbjct: 431 VAGGRLVVDKNRNVLIFRGSGADWLKLREIAVELDKQVPSVLMEVVLAEVTLNDNQGMGV 490 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + S S + G G +++ VL+A + + P Sbjct: 491 EWLARNSVGDLSGTLETLGGLGIGGRGFSYTLN---SAGQTRAVLNAFYDSNQAVIRSSP 547 Query: 276 TLTAISGQSASFTSGGQHL---------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + SG++A+ G + +T + GV L P V + G Sbjct: 548 KIMVKSGETATIEVGNEIPVLTSTRQSDTQTDGDTDVLQQFQYRKTGVDLTVEPIVQASG 607 Query: 327 RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + +RI+ +SE +P+ R +T++ L GG++VL GL+ Q ++G+ Sbjct: 608 LVDIRIRQSLSETQDTSGGDSFLPTILNRAVETSLTLRDGGSVVLGGLISKTNSQGEQGV 667 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 P L K+P+LG LFR + TE+ + P++V+ Sbjct: 668 PWLGKLPLLGPLFRTDSDSTSTTELMVMVVPYVVR 702 >gi|317064333|ref|ZP_07928818.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC 49185] gi|313690009|gb|EFS26844.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC 49185] Length = 451 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 58/303 (19%), Positives = 114/303 (37%), Gaps = 30/303 (9%) Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 + + + +L + +S R + + + + + S+ +++ L+ Q Sbjct: 116 VNISADEVSAILK---NSFGESIRVSSIPKMNIIIIVGKKDSTVSAVRLVKELD-KEIQQ 171 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFG--GKFVSEGGDFSVK 248 V + I +V ++ + +GF + S + G S G VS G ++ Sbjct: 172 VRITSQILDVTDNLFENLGFDWLYSNSGSIEKNKGLDISLIGKAAVEGAGVSFGSGINLI 231 Query: 249 GVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + ++ L+ + A P++ G+ F + + T Sbjct: 232 RQFNDGNDILGLGINLLQATQDLVISAMPSILVADGEEGEFKITEEVIVGEEKKENDNTE 291 Query: 307 VT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGDMP 349 T + G++L P + G I L++ EVS G + Sbjct: 292 KTTYTPLFREAGIILKVKPLIKENGIIFLKVMIEVSNFRLKKSEQENISSDGGTYNSEGG 351 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 S R +TTV++ G TI + GL + +Q L IP L +P++ F+N RE T+ Sbjct: 352 SKIGRSIETTVKMKDGETIFIGGLKRAVVQNLDSRIPFLGTLPVINIFFKNQSVKREITD 411 Query: 410 IFI 412 I+I Sbjct: 412 IYI 414 >gi|323530312|ref|YP_004232464.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. CCGE1001] gi|323387314|gb|ADX59404.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. CCGE1001] Length = 610 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 26/238 (10%) Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------------GG 243 + LKQIG S + GG Sbjct: 373 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLSDGTTVINTTPVGG 432 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + ++AL+++ + A P + ++ A + + ++ Sbjct: 433 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 492 Query: 304 ATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVE 361 + + GV L P V GR +++ + + I ++P +T Sbjct: 493 D--LYSVSTGVSLRVLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESF 550 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + G+P LSKIP++GALFR R E +P ++ Sbjct: 551 VGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRII 608 >gi|254253701|ref|ZP_04947018.1| type II and III secretion system protein [Burkholderia dolosa AUO158] gi|124898346|gb|EAY70189.1| type II and III secretion system protein [Burkholderia dolosa AUO158] Length = 620 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 25/239 (10%) Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------DFGGKFVSEGGD 244 D L Q+G + S + G Sbjct: 384 DDDALHQLGVDWTAHNSHIDVQTGTGTLAQSTYNGTLSQNFGQTALPGNVLAAATPVGAS 443 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + AL++ A + A P + ++ A + Q ++G Sbjct: 444 VAAVLGDAGRYLMARISALQQTKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGD 503 Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVEL 362 + + G+ L P V+ GR +++ + + + ++P + +T + Sbjct: 504 --LYSVSTGISLRVLPMVVEEDGRTRIKLDVAIQDGQLTDQTVSNLPVIQNSTINTQAFI 561 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G +++AG D G+P LSKIP++GALFR + E +P ++ P Sbjct: 562 EEGQALLIAGYRADSATMGVTGVPGLSKIPLIGALFRTDNRQKSHMERLFLLSPRVISP 620 >gi|172064938|ref|YP_001815650.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia ambifaria MC40-6] gi|171997180|gb|ACB68097.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MC40-6] Length = 589 Score = 123 bits (308), Expect = 8e-26, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 25/239 (10%) Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------DFGGKFVSEGGD 244 D L+Q+G + S + G Sbjct: 353 DDDALRQLGVDWTAHNSHIDVQTGTGTLGQNTYNGTLSQNFGQTALAGNVLAAATPVGAS 412 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + AL+ A + A P + ++ A + Q ++G Sbjct: 413 VAAVLGDAGRYLMARISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGD 472 Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVEL 362 + + G+ L P V+ GR +++ + + + ++P + +T + Sbjct: 473 --LYSVSTGISLRVLPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFI 530 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G +++AG D G+P LSKIP++GALFR + E +P ++ P Sbjct: 531 EEGQALLIAGYRADTATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589 >gi|307725648|ref|YP_003908861.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. CCGE1003] gi|307586173|gb|ADN59570.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. CCGE1003] Length = 610 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 26/238 (10%) Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------------GG 243 + LKQIG S + GG Sbjct: 373 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLADGTTVINTTPVGG 432 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + ++AL+++ + A P + ++ A + + ++ Sbjct: 433 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 492 Query: 304 ATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVE 361 + + GV L P V GR +++ + + I ++P +T Sbjct: 493 D--LYSVSTGVSLRVLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESF 550 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + G+P LSKIP++GALFR R E +P ++ Sbjct: 551 VGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRII 608 >gi|159028225|emb|CAO88035.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 518 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 78/205 (38%), Gaps = 19/205 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-------SGGQHLYKTVSSSTGATSVT 308 F L A + + L +P+L GQ A S + + + T+ Sbjct: 306 FLMTLQASIQTGNAKILTDPSLVVQEGQQAVVKLTEKVLVSVETTIDTNSNGNVRTTTPV 365 Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYRVRKADTT 359 D G+ L + G I L + +++P + P Sbjct: 366 FGDAGLTLTVDVNQIDDNGYISLNVAPTIAQPGPQIPFNSGGATINQLTPLITRELLSGL 425 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G +++L+G++++ Q + +P+L IPILGALFR+ +E+ I TP ++ Sbjct: 426 IRLRDGQSLILSGIIQERQQSSETKVPILGDIPILGALFRSRTNQNSRSEVIILLTPKII 485 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFF 444 + A L +Y DA Sbjct: 486 EDSATSTLGI---NYQPGQDAAEVL 507 >gi|45751673|emb|CAF21320.1| InvG protein [Burkholderia thailandensis] Length = 270 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 104/280 (37%), Gaps = 22/280 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 5 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 63 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 64 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 112 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 113 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 170 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E S+ I ++ MP + +T +P ++++ G +DD+ + Sbjct: 171 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 230 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP L+ +P++G LFR E+ P L++ Sbjct: 231 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLR 270 >gi|170698370|ref|ZP_02889444.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] gi|170136709|gb|EDT04963.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] Length = 589 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 25/239 (10%) Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------DFGGKFVSEGGD 244 D L+Q+G + S + G Sbjct: 353 DDDALRQLGVDWTAHNSHIDVQTGTGTLGQSTYNGTLSQNFGQTALAGNVLAAATPVGAS 412 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + AL+ A + A P + ++ A + Q ++G Sbjct: 413 VAAVLGDAGRYLMARISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGD 472 Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVEL 362 + + G+ L P V+ GR +++ + + + ++P + +T + Sbjct: 473 --LYSVSTGISLRVLPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFI 530 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G +++AG D G+P LSKIP++GALFR + E +P ++ P Sbjct: 531 EEGQALLIAGYRADSATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589 >gi|115360614|ref|YP_777751.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia ambifaria AMMD] gi|115285942|gb|ABI91417.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria AMMD] Length = 561 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 25/239 (10%) Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------DFGGKFVSEGGD 244 D L+Q+G + S + G Sbjct: 325 DDDALRQLGVDWTAHNSHIDVQTGTGTLGQNTYNGTLSQNFGQTALAGNVLAAATPVGAS 384 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + AL+ A + A P + ++ A + Q ++G Sbjct: 385 VAAVLGDAGRYLMARISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGD 444 Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVEL 362 + + G+ L P V+ GR +++ + + + ++P + +T + Sbjct: 445 --LYSVSTGISLRVLPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFI 502 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G +++AG D G+P LSKIP++GALFR + E +P ++ P Sbjct: 503 EEGQALLIAGYRADSATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 561 >gi|323186572|gb|EFZ71915.1| hypothetical protein ECOK1357_0057 [Escherichia coli 1357] Length = 367 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164 G + +L + NI ++ D+ V + ++ Sbjct: 10 GVATVVERLLNNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 69 Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 ET N + ++ L++A + L + I ++ + L +G Sbjct: 70 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 124 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + SF FG F + LD F + AL + ++ P + Sbjct: 125 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 179 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335 A F + V +S+ YG +++ P S G+I + + E Sbjct: 180 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 237 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + N +P K T +P G ++++ G + IP LS IP++G Sbjct: 238 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 297 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 +F+ N P +K Sbjct: 298 NVFKYKTSNISNIVRVFLIQPREIK 322 >gi|307149984|ref|YP_003885368.1| type II and III secretion system protein [Cyanothece sp. PCC 7822] gi|306980212|gb|ADN12093.1| type II and III secretion system protein [Cyanothece sp. PCC 7822] Length = 728 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 19/225 (8%) Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAI 269 ++ + + + + G + L F L A + Sbjct: 473 IPYARPSFGTFNNPFQPGVSAATYDAATGQRTFTYQLPNLFQFPQKFLATLQASITSGNA 532 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHF-TPTVL 323 + L +PTL GQ A+ + + + + V T D G+ L + Sbjct: 533 KILTDPTLVVQEGQQATVKLTQKVVESVNTQVDPLSGVRTTTPVLQDAGLTLTVEVDRID 592 Query: 324 SPGRIGLRIQTEV------SEPVIGVNAGDMPSYRVRKADTT--VELPSGGTIVLAGLLK 375 G + L + + G + + + R+ T+ + + G T++L+G++ Sbjct: 593 DNGFVSLFVSPTIAAPGATQTFDSGNGSNNTLTLLSRREMTSGLIRMRDGQTLILSGIIS 652 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P+L IPILGALFR + N +E+ + TP ++ Sbjct: 653 ETERTTVTKVPILGDIPILGALFRRTDNNGNRSEVIVLLTPKIID 697 >gi|292488059|ref|YP_003530936.1| type III secretory protein InvG [Erwinia amylovora CFBP1430] gi|292899270|ref|YP_003538639.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291199118|emb|CBJ46232.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291553483|emb|CBA20528.1| Type III secretory protein InvG [Erwinia amylovora CFBP1430] Length = 588 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 105/292 (35%), Gaps = 25/292 (8%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQ 195 + + V+ + + S +V + + S V +L+ + Q Sbjct: 273 INDLPGEEVVADNSESARVSSDSVNIVAYSDTNSLLVMGTERQVSFVEDLIRAIDIAKRQ 332 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + L + I ++ ++ + ++G Q S + S F S + Sbjct: 333 IQLSLWIIDISKEDINELGVQWSGSTKISSTGVIFGTSSLTPESS-------------IN 379 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + AL ++ + + ++ P + A F + + V +S+ YG + Sbjct: 380 FLANVSALVKSGSAQVISRPEILTQENVPALFDNNSSFYARLVGERN--SSLEKITYGTM 437 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTVELPSGGTI 368 + P L+ + + + ++ + +A +P + T +P G ++ Sbjct: 438 ISVLPR-LAERQHEIEMILDIHDGTAPRDASGDSAHIDSLPVISNTQISTEARVPLGYSL 496 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++ G ++ + GIPLL IP LG LF S ++ + P L+ Sbjct: 497 LVGGYSRNQDEYHDIGIPLLRDIPYLGKLFDYSYKSQTKMVRLFLIHPRLLD 548 >gi|171915159|ref|ZP_02930629.1| putative outer membrane protein (ComQ) [Verrucomicrobium spinosum DSM 4136] Length = 809 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 115/332 (34%), Gaps = 92/332 (27%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------------ITGSSSGPSKS 229 + ++ A QV ++V + E+ LK++GF G + + Sbjct: 463 DEYVDQAVNATPKQVEIQVRMIEINETRLKELGFDWLLGQFNVPGSDRVFAGGAGTADPN 522 Query: 230 FAADFGGKFVSEG------------------------------GDFSVKGVLDRFSFETV 259 A F G+ V+ G G F+V GV F+ V Sbjct: 523 DPAPFPGQSVTSGLRSSGAILGVPSIDGLIGRATVPSANSKSPGFFAVSGVFTDPQFQVV 582 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------------------ 301 L L+++ + LA PT+ SGQ A+ T + Y T Sbjct: 583 LRGLKQSKGVDILAAPTVITKSGQRANVTVAKEFRYPTEFDPPQIPQNLSANVNGVQYVA 642 Query: 302 -------TGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTE--------------VSEP 339 + T+ D G+ L P V S R + L + + Sbjct: 643 NFAPITPSTPTAFEKRDVGITLEVEPVVGSGNRTVDLNLVPSSVEFEGFIDYGTDIQNSA 702 Query: 340 VIGVNAGDM----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 +G+ D+ P +R K T+V + G T+VL G+ + ++ + +P++ Sbjct: 703 PVGIGGADVFFNVPNDILQPIFRTNKITTSVSVWDGNTVVLGGVTFEKRHKIDDKVPVVG 762 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P++G F++ N E + T ++ P Sbjct: 763 DLPLVGRAFQSKVSNVERKNVLFFVTVRVIDP 794 >gi|298489848|ref|YP_003720025.1| type II and III secretion system protein ['Nostoc azollae' 0708] gi|298231766|gb|ADI62902.1| type II and III secretion system protein ['Nostoc azollae' 0708] Length = 818 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 86/251 (34%), Gaps = 12/251 (4%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----ETVL 260 + + + S+ + AD + + + F L Sbjct: 564 ISSASSNPLQPGFTSITQSTNNIITINADGTTSVTQGTAGTATASLPSLYKFPKRFLASL 623 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-T 319 A + + L +PTL GQ A + + T + + G+ L Sbjct: 624 QAQVQTGNAKILTDPTLIVQEGQDAVVKLTSEVYGGIRITDTLREPI-IKEAGLTLAVKV 682 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADT-TVELPSGGTIVLAGLLKD 376 + G + L + VS + G++ R + + L G T++L+G+++D Sbjct: 683 ERIDDNGFVSLSVAPTVSAFANSASTPDGNIALLAARSLQSGILRLRDGQTLILSGIIQD 742 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + +P+L IP+LG+LFR + E E+ + TP ++ +Y+ Sbjct: 743 QDRTTISKLPILGDIPLLGSLFRKTNRQNERREVIVLLTPQVMDDSERSAYGY---NYNP 799 Query: 437 EDDAKAFFFNR 447 + R Sbjct: 800 SSQVRQILERR 810 >gi|91070466|gb|ABE11376.1| putative general (type II) secretion pathway protein D precursor [uncultured Prochlorococcus marinus clone HOT0M-10G7] Length = 640 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 94/280 (33%), Gaps = 41/280 (14%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ-------IGFQHSITGSSSGPSKSFAAD 233 ++ + L++ + QV L V I +V + I +S + Sbjct: 360 AETFIKSLDVRHK-QVALTVKIIDVSLTKSDIKENVFELLTGDTRIISNSGLGILTSNLG 418 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT--------------- 278 S ++ G + + F L A + LA PTL Sbjct: 419 AINPGDSARVSNALTGGVGQGGFMNWLEAKIDNNNAKILASPTLILGEDGNALSSGAAAV 478 Query: 279 ------AISGQSASFT-------SGGQHLYKTVSSSTGATSVTTHDYGVVLHFT-PTVLS 324 A G+ + ++ + + G+ + Sbjct: 479 DDTLSQATIGRPYKNEGFIKVGETVITSFEQSSNEGVTTCTAQEGTAGITFGAKLEKIDD 538 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADT-TVELPSGGTIVLAGLLKDDIQQ 380 G + + +S V RK DT ++ + +G T++L G+L+D Sbjct: 539 NGYVTFALSPAISSVTSTVEIAGCGIQNTLSVRKLDTGSIRVQNGETLILTGVLQDSDTV 598 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P+L IPI G++FR+S +++ E+ I TP ++K Sbjct: 599 TTSKVPILGDIPIFGSIFRSSATQKKKNELIILVTPKILK 638 >gi|170690596|ref|ZP_02881763.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia graminis C4D1M] gi|170145031|gb|EDT13192.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia graminis C4D1M] Length = 609 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 80/238 (33%), Gaps = 26/238 (10%) Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------------GG 243 + LKQIG S + GG Sbjct: 372 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLSDGTTVINTTPLGG 431 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + ++AL+++ + A P + ++ A + + ++ Sbjct: 432 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 491 Query: 304 ATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVE 361 + + GV L P V+ GR +++ + + I ++P +T Sbjct: 492 D--LYSVSTGVSLRVLPLVVEESGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESF 549 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + G+P LSKIP++G LFR R E +P ++ Sbjct: 550 VGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGGLFRYRDDQRSHMERLFLLSPRII 607 >gi|110639568|ref|YP_679778.1| type II general secretion pathway (GSP) D protein [Cytophaga hutchinsonii ATCC 33406] gi|110282249|gb|ABG60435.1| type II general secretion pathway (GSP) D protein [Cytophaga hutchinsonii ATCC 33406] Length = 656 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 21/246 (8%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------GKFVSEGG 243 V ++V I EV ++ + + G + + S + S G F++ G Sbjct: 411 PMVMIEVIIMEVLKNRMVKTGIKAGLNDSLATTQTSGTFLPGLDVKLSTSTINDFINGLG 470 Query: 244 DFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 S+ + SF L ALE + + P L+ ++G A+ + G Y+ + +T Sbjct: 471 IGSITNLGSVTPSFYMTLSALETNNNVEIKSMPKLSTLNGHDANMSIGQTVYYEVQTQNT 530 Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 + L P V ++ L I+ + NA P+ Sbjct: 531 LGSLTTNTITTVQYQSVQANQTLSIKPLVSGDDQVTLTIEVNQTSFAKS-NAAGPPNTTT 589 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + + + + + IVL GL K EG P+LS+IP++ LF + ++ ++ + + Sbjct: 590 SQFKSIIRVRNEEMIVLGGLEKISKSIDTEGTPILSRIPVIKLLFSSKTKSKSKSILVLF 649 Query: 414 ATPFLV 419 P ++ Sbjct: 650 IKPIII 655 >gi|285018275|ref|YP_003375986.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans GPE PC73] gi|283473493|emb|CBA15996.1| probable xanthomonas secretion apparatus protein [Xanthomonas albilineans] Length = 626 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 59/377 (15%), Positives = 124/377 (32%), Gaps = 44/377 (11%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + L+ ++ ++D +V P ADV+ ++ G ++ G + + Sbjct: 227 VPLHNTFVVNRRYKIRDEMVKVPGVADVI----HELF------GSSS----GAHPQSTPS 272 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 +++ L + S + L G R + AV + Sbjct: 273 GSSVLDMQQDVPADVLNLPLPKS-----SDAKAEDLSGRDRMVAMKGEAVWDVRMVPNPD 327 Query: 172 G------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 ++ ++ +++A + Q+ L + I +V R L +G + Sbjct: 328 DNSILLYGPSAHVELMERAIHAVDVA-KRQIELSLWIIDVDRQKLNALGIDWQSSARYGS 386 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + S + L+ F + AL + ++ P + A Sbjct: 387 FTMSANSPQMAS-------------LNGIKFLATVSALSKRGLANIVSRPIVLTEENVPA 433 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIG 342 F + Y+ V A S+ YG ++ P + G + + + + Sbjct: 434 IFDNSHTQYYQLV--GERAVSLEHFTYGTMVSVLPRLTQDGEVEMIVTVRDGQSQNSSTA 491 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 N +P + T +P +++L G D + IP LSK+P++G LFR + Sbjct: 492 KNTTVIPEVSDTQISTVARVPKFKSLLLGGSTIDRHENDTSYIPGLSKLPVVGRLFRLDK 551 Query: 403 FNREETEIFIAATPFLV 419 E P ++ Sbjct: 552 TITEHMVRLFLIQPRVL 568 >gi|226227920|ref|YP_002762026.1| hypothetical protein GAU_2514 [Gemmatimonas aurantiaca T-27] gi|226091111|dbj|BAH39556.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 735 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 50/307 (16%), Positives = 107/307 (34%), Gaps = 73/307 (23%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------------- 224 + L++ QV +K I V R ++ IG + + + Sbjct: 423 LQQLDVRTP-QVAIKAKIIFVNRTGIQDIGLAYDLGTGNKQFFQQLVPRTDPNTLTPVDT 481 Query: 225 ------------------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 G + + A+ + L R+ L Sbjct: 482 DGDGVPDAMGGGSPYQGPARINLGGNAIAGIANANNAIKPNALNLIYSTALGRYQLTAFL 541 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------------------ 302 +AL+ ++ +EP++T ++ +SA G + + + +S Sbjct: 542 NALQTSSLADVQSEPSITILNNRSAEIFVGQEIPIRVIDASAGGQGGGGGGGGGGGGGAA 601 Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 +V+ + G+ L TP + + + L I+ E S I + + Sbjct: 602 GQPNAAAFFPRATVSKEEAGIKLSVTPQITNNKMVMLNIKAENSSAEIASTDVGV-IFNR 660 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 ++A++ V + G V+ GL + + + GIP+L +P +G +F + N + ++ I Sbjct: 661 QRAESQVLVADGEAAVIGGLTVTETTRFRSGIPVLMNLPFVGRIFSQNTKNETKRDLLIL 720 Query: 414 ATPFLVK 420 TP ++ Sbjct: 721 VTPHILD 727 >gi|312172187|emb|CBX80444.1| Type III secretory protein InvG [Erwinia amylovora ATCC BAA-2158] Length = 517 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 101/291 (34%), Gaps = 23/291 (7%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQ 195 + + V+ + + S +V + + S V +L+ + Q Sbjct: 202 ITDLPGEEVVADNSESARVSSDSVNIVAYSDTNSLLVMGTERQVSFVEDLIRAIDIAKRQ 261 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + L + I ++ ++ + ++G Q S + S F S + Sbjct: 262 IQLSLWIIDISKEDINELGVQWSGSTKISSTGVIFGTSSLTPESS-------------IN 308 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + AL ++ + + ++ P + A F + + V +S+ YG + Sbjct: 309 FLANVSALVKSGSAQIISRPEILTQENVPALFDNNSSFYARLVGERN--SSLEKITYGTM 366 Query: 316 LHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIV 369 + P + I + + + G +P + T +P G +++ Sbjct: 367 ISVLPRLAERQHEIEMILDIHDGTAPRDASGGSAHIDSLPVISNTQISTEARVPLGYSLL 426 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++ + GIPLL IP LG LF S ++ + P L+ Sbjct: 427 VGGYSRNQDEYHDIGIPLLRDIPYLGKLFDYSYKSQTKMVRLFLIHPRLLD 477 >gi|254575124|gb|ACT68025.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii DC283] Length = 602 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 56/358 (15%), Positives = 122/358 (34%), Gaps = 34/358 (9%) Query: 67 QDVLVSDPTKADV--VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 +DV +S P A V + + + G++ G + + A Sbjct: 227 RDVPISVPGVATVLNQLLNNTSCREGGRSA---------PAGAIITVDNDTRSALEAASA 277 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 F + + + + + Q V S+T ++ S + + Sbjct: 278 TQKGNFPPLPSFNAAPAARGRAVDRDIPSQQTIN-IVGYSDTNSLLIQGSERQVSFVEDL 336 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 +N ++I + Q+ L + I ++ +D + ++G + +F S Sbjct: 337 VNAIDIP-KQQIQLSLWIIDISKDDINELGIRWQGAAKMGNTGVTFNTSSLTPESS---- 391 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + AL + + + ++ P + A F + K + T Sbjct: 392 ---------LHFLADVSALAKKGSAQVVSRPEILTQENVPALFDNNSSFYAKLIGERT-- 440 Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADT 358 +S+ YG ++ P + I + + + ++ N +P + T Sbjct: 441 SSLEKITYGTMISVLPRLAQRQQEIEMILNIQDGGLLLNADGSTENIDSLPMVNNTQIST 500 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +P G ++++ G +D + + GIPLL IP +G LF S + ++ P Sbjct: 501 EARVPVGYSLLVGGYSRDQDEHHRLGIPLLRDIPFVGKLFDYSYTSHKKMVRLFLIQP 558 >gi|326423830|ref|NP_760303.2| type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6] gi|319999200|gb|AAO09830.2| Type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6] Length = 594 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 46/372 (12%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + G +I + + ER L I + + +++ + V Sbjct: 223 RVEGNVVLIAPQDELDLREKQQLEKERLAEELGSLKSEIIKVNFAKASDIAEMINGKESV 282 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + + T ++++N L+I + QV ++ I V L Sbjct: 283 SMLSERGSVAIDERTNSLLLRELPENIEVIREIINSLDIPVK-QVQIEARIVTVNEGNLD 341 Query: 212 QIGFQHSITGSSSGPSKSFA---------------------------------------- 231 ++G + T + + + Sbjct: 342 ELGVRWGFTSINGSTTVGGSIENNLATIGLYNAGSGSGSGDSGSGGSGSEGGSASIDDFL 401 Query: 232 --ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + F V + + L AL+R + ++ P L + + A Sbjct: 402 NVNLAATSANASSIAFQVAKLGSDLLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQ 461 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGD 347 G + Y SS+GAT+V+ + L TP + R+ L + P + G+ Sbjct: 462 GTEIPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEIVKTGTGE 520 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S N + Sbjct: 521 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNTTDKVPLLGDLPLLGALFRRSYENVGK 580 Query: 408 TEIFIAATPFLV 419 E+ I TP ++ Sbjct: 581 RELLIFVTPKVI 592 >gi|37681174|ref|NP_935783.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016] gi|37199925|dbj|BAC95754.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016] Length = 594 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 46/372 (12%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + G +I + + ER L I + + +++ + V Sbjct: 223 RVEGNVVLIAPQDELDLREKQQLEKERLAEELGSLKSEIIKVNFAKASDIAEMINGKESV 282 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + + T ++++N L+I + QV ++ I V L Sbjct: 283 SMLSERGSVAIDERTNSLLLRELPENIEVIREIINSLDIPVK-QVQIEARIVTVNEGNLD 341 Query: 212 QIGFQHSITGSSSGPSKSFA---------------------------------------- 231 ++G + T + + + Sbjct: 342 ELGVRWGFTSINGSTTVGGSIENNLATIGLYNAGSGSGSGDSGSGGSGGEGGSASIDDFL 401 Query: 232 --ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + F V + + L AL+R + ++ P L + + A Sbjct: 402 NVNLAATSANASSIAFQVAKLGSDLLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQ 461 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGD 347 G + Y SS+GAT+V+ + L TP + R+ L + P + G+ Sbjct: 462 GTEIPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEIVKTGTGE 520 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S N + Sbjct: 521 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNTTDKVPLLGDLPLLGALFRRSYENVGK 580 Query: 408 TEIFIAATPFLV 419 E+ I TP ++ Sbjct: 581 RELLIFVTPKVI 592 >gi|332535460|ref|ZP_08411243.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Pseudoalteromonas haloplanktis ANT/505] gi|332035105|gb|EGI71619.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Pseudoalteromonas haloplanktis ANT/505] Length = 639 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 59/278 (21%), Positives = 109/278 (39%), Gaps = 35/278 (12%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--------------HSITGSS 223 + + KV++ + + QV + V + EV + LKQ G + Sbjct: 335 SVAGGKVLSSIEVEDLPQVRVSVQLYEVNQRRLKQWRPDISVLSNGYEKEAGLFGRDGMT 394 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S S + + + +++ +F+ + + LE+ RTL+ PT+T ++G+ Sbjct: 395 ERESGSATIENALQLIGGQLTNNLQLSTSQFAIDMLFSLLEQEGISRTLSRPTITVLAGE 454 Query: 284 SASFTSGGQHLYKTVSSSTGATS------------VTTHDYGVVLHFTPTVLSPGRIGLR 331 SA F GG+ T S +G TS +GV L+ V RI L Sbjct: 455 SAVFKVGGEVPVPTSYSPSGITSGQQGSSGSVFSGTEFKSFGVELNVRAMVDDKDRITLD 514 Query: 332 IQTEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + +S P ++ + ++ R T+ L G +++ GL+ D Sbjct: 515 LNPVISLPDTTLTAEIAQSTGSSLNSSAFNTRSMQTSTRLKDGQPLIIGGLISTDNNASH 574 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +P + +LG L + + E+ I TP LV+ Sbjct: 575 DFVPDGNGNSMLGKLSETTSKSENNRELIIVVTPNLVR 612 Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 1/133 (0%) Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 D+ + + T DV V + R + + K +G+ ++++ D + + D + Sbjct: 49 FTRDISRIALGHETTLDVNVVNGRELLILAKKLGRTSMMVWYDDKSS-ETFLLGVTEDYS 107 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 LE L D + + VVL G V TI A E ++ +L S + Sbjct: 108 VLENALNDIHPDVQLTIAPDRHAVVLRGEVPTINYRHAAYEAAKNYLYASSSQASQPVIT 167 Query: 182 KKVMNLLNIAGED 194 + + Sbjct: 168 SNPNQGMFNSLAQ 180 >gi|195952904|ref|YP_002121194.1| type II and III secretion system protein [Hydrogenobaculum sp. Y04AAS1] gi|195932516|gb|ACG57216.1| type II and III secretion system protein [Hydrogenobaculum sp. Y04AAS1] Length = 653 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 96/247 (38%), Gaps = 24/247 (9%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--------KFVSEGGDFSV 247 + + V E+ +D KQ+G + G + ++F F Sbjct: 406 IQIDVKAVEISKDYQKQLGLGIGGAYAGRGITILNTSNFNPISPLANAFSFTPGSSPIVT 465 Query: 248 KGVLDRFS--------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 ++ + + ALE +++ + TL A++ Q S T G ++ Sbjct: 466 ATPINAPNGLMSGIYSEGKFHVLGFEIQALESINKAKSVFKSTLLAMNDQPTSLTQGIEY 525 Query: 294 LYKTVSS-STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 + T+S+ +VT + + TP VL G+I L I + + + + A P+ Sbjct: 526 PFTTISTPGQAVPTVTLQNVLNSIKVTPQVLPNGKILLNINIQ-NMSLGPLAANGQPTIN 584 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 ++ L G T+ + G+ + +GIP L K+PI+G + ++ T +FI Sbjct: 585 QNSNSLSIVLSDGATLAIGGVGLKNESNGLQGIPGLDKVPIIGNVGMTKNESKNNTNLFI 644 Query: 413 AATPFLV 419 T V Sbjct: 645 FITAKRV 651 >gi|320155169|ref|YP_004187548.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O] gi|319930481|gb|ADV85345.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O] Length = 594 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 46/372 (12%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + G +I + + ER L I + + +++ + V Sbjct: 223 RVEGNVVLIAPQDELDLREKQQLEKERLAEELGSLKSEIIKVNFAKASDIAEMINGKESV 282 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + + T ++++N L+I + QV ++ I V L Sbjct: 283 SMLSERGSVAIDERTNSLLLRELPENIEVIREIINSLDIPVK-QVQIEARIVTVNEGNLD 341 Query: 212 QIGFQHSITGSSSGPSKSFA---------------------------------------- 231 ++G + T + + + Sbjct: 342 ELGVRWGFTSINGSTTVGGSIENNLATIGLYNAGSGSGSGDSGSGGSGSEGGSASIDDFL 401 Query: 232 --ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + F V + + L AL+R + ++ P L + + A Sbjct: 402 NVNLAATSANASSIAFQVAKLGSDLLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQ 461 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGD 347 G + Y SS+GAT+V+ + L TP + R+ L + P + G+ Sbjct: 462 GTEIPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEIVKTGTGE 520 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S N + Sbjct: 521 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNTTDKVPLLGDLPLLGALFRRSYENVGK 580 Query: 408 TEIFIAATPFLV 419 E+ I TP ++ Sbjct: 581 RELLIFVTPKVI 592 >gi|126659012|ref|ZP_01730153.1| general secretion pathway protein D [Cyanothece sp. CCY0110] gi|126619669|gb|EAZ90397.1| general secretion pathway protein D [Cyanothece sp. CCY0110] Length = 743 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 17/221 (7%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G + + + G +E G S F + ++ + L Sbjct: 494 GEPDTFERTVEDGIITTTVTPGSIATAEAGLPSFFQF--PRRFLAQIETNIQSGNAKILT 551 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHF-TPTVLSPGR 327 +PTL GQ A+ + + + + V T D G+ L + G Sbjct: 552 DPTLVVQEGQEATVKLTQKVIENITTQVDPLSGVRTTTPVLQDAGLTLAINVDKIDDNGY 611 Query: 328 IGLRIQTEVS--------EPVIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDI 378 I L + ++ + ++ R+ + + L G T++L+G++ + Sbjct: 612 INLTVSPTIAAVGDVQAFDAGADGGTNNLFLLNRRELSSGLIRLRDGQTLILSGIISESD 671 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 Q +PLL IP+LGALFR+ + TE+ + TP ++ Sbjct: 672 QSTTSKVPLLGDIPLLGALFRSQTDTSQRTEVIVLLTPQIL 712 >gi|22127359|ref|NP_670782.1| hypothetical protein y3485 [Yersinia pestis KIM 10] gi|108810715|ref|YP_646482.1| outer membrane secretin family protein [Yersinia pestis Nepal516] gi|229840586|ref|ZP_04460745.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842864|ref|ZP_04463016.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229900910|ref|ZP_04516034.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|270487710|ref|ZP_06204784.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294502758|ref|YP_003566820.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003] gi|21960443|gb|AAM87033.1|AE013951_8 hypothetical [Yersinia pestis KIM 10] gi|108774363|gb|ABG16882.1| outer membrane secretin family protein [Yersinia pestis Nepal516] gi|229682249|gb|EEO78341.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|229690131|gb|EEO82188.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229696952|gb|EEO86999.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|262360790|gb|ACY57511.1| hypothetical protein YPD4_0602 [Yersinia pestis D106004] gi|262364735|gb|ACY61292.1| hypothetical protein YPD8_0602 [Yersinia pestis D182038] gi|270336214|gb|EFA46991.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294353217|gb|ADE63558.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003] gi|320016745|gb|ADW00317.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 149 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 322 VLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + RI + + EVS N PS R+RKA+TTVEL G + +L GL+ Sbjct: 1 MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTE 60 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 ++ + IP + IP+LGALFRN++ R ++E+ + AT LVKPV+ R + PD + Sbjct: 61 RESLKKIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTS 118 Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 + FF N + + + GFI Sbjct: 119 TVERFF----NLTNIKDAKRRKQAKEFLQKGGFI 148 >gi|284052867|ref|ZP_06383077.1| type II and III secretion system protein [Arthrospira platensis str. Paraca] Length = 785 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 12/206 (5%) Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D + F + L A + + L +PTL G++AS Sbjct: 561 TDGSLTALGSTTAAVFPFFQYPRRFLSTLQAQIVSGRAKILTDPTLVVQEGETASVQLVQ 620 Query: 292 QHLYKTVSSSTGAT-------SVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV 343 + L ++ T G+ L + G + + I EVS P V Sbjct: 621 EVLQSRTTTFTDTPSGTRETIQPQLVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQV 680 Query: 344 NAGD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 G + R + + L G T++++G+++D + IPLL +PILG+LFR Sbjct: 681 GTGGDDFVLQIFRRNLQSGRIRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFR 740 Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425 S + E E+ + TP ++ Sbjct: 741 RSSTSSERAEVIVLVTPNILDDSDRS 766 >gi|108809091|ref|YP_653007.1| putative outer membrane secretin family protein [Yersinia pestis Antiqua] gi|108781004|gb|ABG15062.1| putative outer membrane secretin family protein [Yersinia pestis Antiqua] Length = 149 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 322 VLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + RI + + EVS N PS R+RKA+TTVEL G + +L GL+ Sbjct: 1 MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTE 60 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q+ + IP + IP+LGALFRN++ R ++E+ + AT LVKPV+ R + PD + Sbjct: 61 QESLKKIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTS 118 Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 + FF N + + + GFI Sbjct: 119 TVERFF----NLTNIKDAKRRKQAKEFLQKGGFI 148 >gi|116620187|ref|YP_822343.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223349|gb|ABJ82058.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 872 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 67/323 (20%), Positives = 111/323 (34%), Gaps = 54/323 (16%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 VR+I D QR + + + + ++K+++ L+ + +V + + + E Sbjct: 289 VRSIADIQRFFPYNSQNAIIAKGSADQVALAEKILHDLD-KPKSEVVVDIIVMEASSVYT 347 Query: 211 KQIGFQHSITGSSSGPSKSFAADF------------------------------------ 234 +Q+ + G + G + + + Sbjct: 348 RQLTAAIAAQGLNVGVNFTPRSGLQVVNNPTTTGGTTTSGTGTGTATGTGTGTGTGTGTG 407 Query: 235 GGKFVSEGGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTS 289 S G L F L + + L P L A+ A+ Sbjct: 408 TSSVSGSAIPLSNLGHLSSADFSTTIPAATLQLVLSDGNTKVLQSPQLRAVDNVKATLKI 467 Query: 290 GGQHLYKTVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 G + T S G T T D GV + TP V G + + I ++S Sbjct: 468 GDRQPTATGSFQPGIGGVGINPLVNTQFTYIDVGVNVELTPRVHDNGDVSMHIDLDISSV 527 Query: 340 VIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 VN D P RK + + G +LAGL K + K GIP L+ +PI+G L Sbjct: 528 TGHVNLGGIDQPIIGQRKVSHDIRMHEGSVQLLAGLTKWQDTKTKTGIPGLANVPIIGRL 587 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F +RE E+ IA P +V+ Sbjct: 588 FSGESVDRERQELMIALIPHIVR 610 >gi|116620720|ref|YP_822876.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223882|gb|ABJ82591.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 527 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 57/328 (17%), Positives = 118/328 (35%), Gaps = 44/328 (13%) Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 D +D + +++ A + + +++V+L V + ++ E Sbjct: 217 DTTNPQDFNSVITAVQQAFAIEKVAFDTQNNSVILRDRVSKVIPARMMFE---------- 266 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + +V +++ EV + G + T S +F Sbjct: 267 ---------------ELMGPRAEVEIELRFLEVSLNDAVTYGVDLANTFSVIPLQNAFNF 311 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 K ++ F + + + A ++ + L + ++ Q A+ G + Sbjct: 312 AQLAKSLTSSSLFGINI------LSSAIVATMSNSSGKLLLSSEVRSVDNQPATLHVGDR 365 Query: 293 HL------------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + ++ T S T D G+ L TP V + L I +E + + Sbjct: 366 YPVLTSGYYGPQSFTNGANAYTPPPSFTFEDLGLTLKITPAVHGTESVTLDIDSEF-KVL 424 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G + +P R + +L G +AGL+ D + GI +S++P+LG L Sbjct: 425 AGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVLGQLTST 484 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLS 428 N++E+++ I P L+ P + LS Sbjct: 485 HTRNKDESQVLILMRPRLLTPPPGQALS 512 >gi|116071978|ref|ZP_01469246.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. BL107] gi|116065601|gb|EAU71359.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. BL107] Length = 744 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 11/201 (5%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD-- 311 SF + + A+ +++ +TLA+PTL GQ A +G + ++ T S Sbjct: 545 NSFYSYVEAVIESSSAKTLAQPTLLVQEGQEAEVQTGTSVITSVSTTDTSNGSTQFEYSR 604 Query: 312 --YGVVLHF-TPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADT-TVELPSG 365 G+ L + G + L I E+S EP N + + R + ++ L Sbjct: 605 ENAGLSLKVKVSKIDDNGFVSLNIDPEISVPEPAGESNGVAIFNIVGRSLSSGSIRLRDR 664 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T++L G+++D +++ P+L +P++G LFR++ R + E+ I TP +V Sbjct: 665 QTLILTGVIQDQDKEIARKWPILGDLPVIGQLFRSTDSQRSKNELVILVTPMIVDDEMGG 724 Query: 426 DLSRPDDHYSVEDDAKAFFFN 446 Y Sbjct: 725 SYGY---GYRPSTREARQLMG 742 >gi|237737584|ref|ZP_04568065.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC 9817] gi|229419464|gb|EEO34511.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC 9817] Length = 551 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 98/250 (39%), Gaps = 24/250 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVSEGGDFSVK--- 248 +Q+ + I +V ++ + +GF +G++ G + + G +S G Sbjct: 277 EQIRIDAQILDVTDNLFETLGFNWIYDNSGNTEGNNSWSMSLLGNSSISGIGSIYSSSIA 336 Query: 249 ----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ LE + + P++ + G+ SF + + Sbjct: 337 ISKQFNSGNDILNLGINLLESTQDLVVSSRPSILVLDGEEGSFKVAEEVIVGEQREEDED 396 Query: 305 TS-----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------ 353 T+ + G++L TPT+ G + L++ E+S + VN + Sbjct: 397 TNKVITTPIFREAGIILKATPTIRKDGWVILKVLIEISNFKLKVNKDESEESGTYNSEGG 456 Query: 354 ----RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R +TT+++ +G TI + GL K + L IP +P++ F+N + E ++ Sbjct: 457 SKVGRSIETTIKIKNGETIFIGGLKKATVHNLDSKIPYFGTLPMINFFFKNQNISHEISD 516 Query: 410 IFIAATPFLV 419 I++ +V Sbjct: 517 IYVKMKVNIV 526 >gi|116074048|ref|ZP_01471310.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. RS9916] gi|116069353|gb|EAU75105.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. RS9916] Length = 670 Score = 119 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 11/201 (5%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309 SF L A ++T+ +TLA PTL G+SA +G + ++ + T Sbjct: 471 NSFYGYLEAAIQSTSAKTLASPTLLVQEGESAKVETGTSVITGVKATETANGSTQFENTR 530 Query: 310 HDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SYRVRKADT-TVELPSG 365 + G+ L + G + L++ VS P +P + R + V L Sbjct: 531 ENAGLTLGVDIEKIDDNGFVTLKVFPSVSIPQEAGFQEGVPIYNITGRSLSSGRVRLRDR 590 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T+VL G++++ ++ P+L +P+LG +FR + RE+ E+ I TP +V A Sbjct: 591 QTLVLTGVIRESDIEVVRKWPILGDLPVLGQMFRKTESEREKQELVILVTPSIVDDEAGG 650 Query: 426 DLSRPDDHYSVEDDAKAFFFN 446 + Sbjct: 651 AYGY---GFRPSTKEARQLMG 668 >gi|33866866|ref|NP_898425.1| general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 8102] gi|33639467|emb|CAE08851.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 8102] Length = 344 Score = 119 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 8/176 (4%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD- 311 SF + + A+ ++++ +TLA+PTL G++A +G + ++ T S + Sbjct: 143 DDSFYSYVEAMIQSSSAKTLAQPTLLVQEGETAMVETGQSVITGVSATETANGSTQFQNT 202 Query: 312 ---YGVVLHF-TPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADT-TVELPS 364 G+ + + G I L ++ E+S P + + + RK ++ ++ L Sbjct: 203 RENAGLTVDLSVSKIDDNGFISLELKPEISVPIPAGTQEGVGIFNIQARKLESGSIRLRD 262 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G +++L G++ D +Q P+L +P++G LFR S +RE+ E+ I TP ++ Sbjct: 263 GQSLILTGVITDSDRQQVRKWPILGDMPLIGQLFRQSSSSREKNELVIIVTPTILD 318 >gi|62287139|sp|Q9ZHF3|PILQ_NEIME RecName: Full=Type IV pilus biogenesis and competence protein pilQ; Flags: Precursor gi|4027986|gb|AAC96097.1| secretin precursor [Neisseria meningitidis H44/76] Length = 766 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 21/231 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 K+++ L++ QV ++ I E + +G + TG +++ A +G G Sbjct: 511 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 569 Query: 243 GDF-----------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 GD + L A E + +TLA P + + + A Sbjct: 570 GDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKPKTLANPRVLTQNRKEA 629 Query: 286 SFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 SG + + S S G +T+ + L TP + G+I + ++ P Sbjct: 630 KIESGYEIPFTVTSRSGGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPRQCA 689 Query: 344 NAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + + + +T + +GGT+++ G+ ++D +PLL+ P+ Sbjct: 690 SGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLATSPL 740 >gi|309586|gb|AAA25456.1| outer membrane protein [Neisseria gonorrhoeae] Length = 711 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 89/231 (38%), Gaps = 21/231 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 K+++ L++ QV ++ I E + +G + TG +++ A +G G Sbjct: 456 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 514 Query: 243 GDF-----------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 GD + L A E + +TLA P + + + A Sbjct: 515 GDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKTKTLANPRVLTQNRKEA 574 Query: 286 SFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 SG + + + S G +T+ + L T + G+I + ++ P Sbjct: 575 KIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLTVTANITPDGQIIMTVKINKDSPRQCA 634 Query: 344 NAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + + + + +T + +GGT+++ G+ +++ +PLL+ P+ Sbjct: 635 SGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLATSPL 685 >gi|297621836|ref|YP_003709973.1| putative type III secretion protein SctC [Waddlia chondrophila WSU 86-1044] gi|297377137|gb|ADI38967.1| putative type III secretion protein SctC [Waddlia chondrophila WSU 86-1044] Length = 1115 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 84/269 (31%), Gaps = 39/269 (14%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV +++ I E + G + + A G + + + G Sbjct: 799 RPLRQVFIEMLILETTLEDSLDYGVAWGSHSGGGSTATAQAYIGGASPLVGALNRDLSGT 858 Query: 251 LDR---------------------------FSFETVLHALERATAIRTLAEPTLTAISGQ 283 + ++ A + + P + + Sbjct: 859 NTPDASNLITDVGYTLGIIGRRLTHNGTQFATLGALVTAQHNRQNSKVILNPKIITEDNK 918 Query: 284 SASFTSG-----GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 +A G + S T+ D G + TP + + + L I+ EVS Sbjct: 919 TAELFVGINTRFQTNSISNDEGSVITTNFEYRDVGTTIRVTPLIGNGDIVTLEIEEEVSR 978 Query: 339 PVIG-------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + + P+ + + TTV +P ++++GL++D+ + P L I Sbjct: 979 VAPQAVQGGSDIQDPNAPTTSISRTSTTVHVPDRHFVIISGLIQDEKIHSRNQFPCLGGI 1038 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 PI+GA F + + + P ++ Sbjct: 1039 PIIGAAFSAKINDDVKRTQMLFIRPQIID 1067 >gi|281356803|ref|ZP_06243294.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316930|gb|EFB00953.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 850 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 52/336 (15%), Positives = 101/336 (30%), Gaps = 86/336 (25%) Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------- 219 +++ L+ + + +++ EV + L+++GF S+ Sbjct: 495 SVKNTPENLRRLDELIRQLDAIEKPLIMVEIKGIEVSEEDLQELGFDWSMSAIGSVKTDA 554 Query: 220 ----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF------------------- 256 ++ + V EG ++D ++F Sbjct: 555 SGNMVSGWLFGQGGGQSNPATRTVREGITGVNTALIDGWNFFPSLFGNVHPFGSDVPLNI 614 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVT-- 308 ++AL R T TLA P + + + AS + + G ++T Sbjct: 615 SLTINALSRNTRTETLAAPKVMTSNDRMASVRMVKSYQFPEDWDAYEIEDDDGNYTITAP 674 Query: 309 ------THDYGVVLHFTPTVLSPG-RIGLRIQTEVS-----------------------E 338 D G++ TP V + I L + V+ + Sbjct: 675 VPSFGDETDIGIIFDVTPKVNADNYTITLEVNPTVTNYIGRDEYNIQVKGILTEYVRATD 734 Query: 339 PVIGVNAGDM---------------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 P G G P R V + G TI+L G++ + Sbjct: 735 PSTGAFTGGTTLKQTKTTDRFNVWKPIISRRNVKVNVNVYDGETIILGGMIDATTTTRTD 794 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P+L +P++G F++ N + + T LV Sbjct: 795 KWPILGDLPLVGRFFQSQSENITRNNLLLFVTTRLV 830 >gi|187735593|ref|YP_001877705.1| type II and III secretion system protein [Akkermansia muciniphila ATCC BAA-835] gi|187425645|gb|ACD04924.1| type II and III secretion system protein [Akkermansia muciniphila ATCC BAA-835] Length = 907 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 55/388 (14%), Positives = 108/388 (27%), Gaps = 138/388 (35%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH-------------------------------SI 219 QV + EV ++ +++GF Sbjct: 515 GESQQVRIMTKFVEVTQENTEELGFDWIVTPFSVSNDRSTFLGGGTNYGTGSTSDSFTQS 574 Query: 220 TGSSSGPSKSFAADFGGKFVSEG--------------------------------GDFSV 247 G +G + +D V+ G G S+ Sbjct: 575 PGGVTGWPVNSGSDTINGLVTGGNRTGDYAITKNSVDNLLNSTNRSEASQKNAAPGIMSL 634 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------ 301 G+ D SF+ ++ L + L P++TA SG++A + Y T Sbjct: 635 TGIYDEGSFQMLMRGLSQKKGSDVLTAPSVTAKSGETAKIEIIREFWYPTEYEPPELPNS 694 Query: 302 --------------------------------------TGATSVTTHDYGVVLHFTPTVL 323 GV L PT+ Sbjct: 695 VGNSGYNNGYGYGNNGNIVDGLLGNQIQPQISSFPVTPATPGVFEMKPVGVTLEVVPTIG 754 Query: 324 SPGRIG-LRIQTEVSEP------------------------VIGVNAGDMPSYRVRKADT 358 I L + + E + N + P + R +T Sbjct: 755 DNKYIIDLNFKPSIVEFEGFVNYGSPIQSTGVGSDGKPMSLTLTENRIEQPIFSKRSVET 814 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 ++ + G T+ + GL+ +++Q +++ +P+ +P++G FR++ N + + I T + Sbjct: 815 SLFIYDGHTVAIGGLITENVQTVEDKVPIFGDLPLIGRFFRSNSDNHIKKNLMIFVTGQI 874 Query: 419 VK----PVAMRDLSRPD--DHYSVEDDA 440 + PV L + + Sbjct: 875 IDATGQPVRGNALPTAAAPESALPASEG 902 >gi|303252187|ref|ZP_07338355.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648970|gb|EFL79158.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 190 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 5/168 (2%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 +SG++A GG+ + G SV ++G+ L V RI L + VS Sbjct: 2 LSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKSDRIRLVLSQSVSTI 60 Query: 340 VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + +P + R++ +T E+ +G + +++GLL + + +P+L IPILGA Sbjct: 61 AGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKVPVLGDIPILGAF 120 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 FRN+ +RE E+ + AT LVKPV + P + + FF Sbjct: 121 FRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFFN 166 >gi|320539812|ref|ZP_08039471.1| putative predicted fimbrial transporter [Serratia symbiotica str. Tucson] gi|320029998|gb|EFW12018.1| putative predicted fimbrial transporter [Serratia symbiotica str. Tucson] Length = 403 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 90/248 (36%), Gaps = 25/248 (10%) Query: 150 MVRTIQDSQRAVELSETFLSQSGR--NQYANSSSKKVMNLLNIAGED------------- 194 V + A E++E+ +Q G + + + K N L I Sbjct: 118 SVTLALKNADAAEIAESLNAQRGALLGERGSVVADKRTNALLIRDTAPVLALLKKRVAEM 177 Query: 195 -----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK- 248 QV L I + + L ++G + + +F + S Sbjct: 178 DIPLAQVQLASYIVTINSENLHELGVRWGLAADERPAQPLRLDNFNVGLTQQKSTLSAGF 237 Query: 249 --GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 L L ALE+ + +A P L Q+AS G + Y+ S ++GATS Sbjct: 238 HLARLSGRLLNLELTALEQENRVEIIANPRLLTAHMQTASIKQGTEIPYEVSSGASGATS 297 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPS 364 V + + + TP VL GRI L + + P + G+ + ++ T + + Sbjct: 298 VEFKEAVLGMEVTPRVLPDGRITLTLYISQNMPGRSVSRGEGEALTIDKQEIKTQITVKD 357 Query: 365 GGTIVLAG 372 G TIVL G Sbjct: 358 GETIVLGG 365 >gi|145597786|ref|YP_001161862.1| outer membrane secretin family protein [Yersinia pestis Pestoides F] gi|229837374|ref|ZP_04457537.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|145209482|gb|ABP38889.1| outer membrane secretin family protein [Yersinia pestis Pestoides F] gi|229705497|gb|EEO91507.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] Length = 149 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 322 VLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + RI + + EVS N PS R+RKA+TTVEL G + +L GL+ Sbjct: 1 MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTE 60 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 ++ + IP + +P+LGALFRN++ R ++E+ + AT LVKPV+ R + PD + Sbjct: 61 RESLKKIPFIGDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTS 118 Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 + FF N + + + GFI Sbjct: 119 TVERFF----NLTNIKDAKRRKQAKEFLQKGGFI 148 >gi|62297323|sp|P35819|PILQ_NEIGO RecName: Full=Type IV pilus biogenesis and competence protein pilQ; AltName: Full=Outer membrane protein omc; Flags: Precursor gi|1173875|gb|AAC43603.1| PilQ [Neisseria gonorrhoeae] gi|1589217|prf||2210365A pilQ gene Length = 720 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 89/231 (38%), Gaps = 21/231 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 K+++ L++ QV ++ I E + +G + TG +++ A +G G Sbjct: 465 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 523 Query: 243 GDF-----------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 GD + L A E + +TLA P + + + A Sbjct: 524 GDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKTKTLANPRVLTQNRKEA 583 Query: 286 SFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 SG + + + S G +T+ + L T + G+I + ++ P Sbjct: 584 KIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLTVTANITPDGQIIMTVKINKDSPRQCA 643 Query: 344 NAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + + + + +T + +GGT+++ G+ +++ +PLL+ P+ Sbjct: 644 SGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLATSPL 694 >gi|32471479|ref|NP_864472.1| general secretion pathway protein D [precursor] [Rhodopirellula baltica SH 1] gi|32443320|emb|CAD72153.1| general secretion pathway protein D [Precursor] [Rhodopirellula baltica SH 1] Length = 1265 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 100/323 (30%), Gaps = 64/323 (19%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 AV ++T + +++++ L+ V +K IAEV+ D +IG + + Sbjct: 730 AVAEAQTNSVLLSVSPRIYEEVRQLIDRLD-RRPPMVLIKTLIAEVQLDDGFEIGGEFGL 788 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---------------------------- 251 S + F+ G Sbjct: 789 QDSLLFDRGKATGAIATGNPASDPGFNFGGTSVNLPNANSFGQENLASKGITSFGAGASQ 848 Query: 252 ----------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 S L L A ++ L+ P + G Sbjct: 849 LTQLSGLNSGGFVFSAASESVNLFLRTLRVANRLQILSRPEIMTADNTEGFVQVGQSFPR 908 Query: 296 KTVSSSTGATS---------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-- 344 T S TG T + + G++L TP V + G I + I S+ Sbjct: 909 PTELSFTGGTGGTASQPIIGIEDEEIGIILRVTPRVGADGMIFMAIDASRSDINNNEGQI 968 Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 +P+ +A T+ G T+V GL++ Q +P LS IP++G Sbjct: 969 IGAFQDDVPIFVPAIDRTQAQATITAFDGQTVVFGGLIQKVRQNRTRRVPYLSNIPVVGT 1028 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 F+ + +E+ + TP LV Sbjct: 1029 FFKFDSEIEQRSELLVVMTPILV 1051 >gi|291569731|dbj|BAI92003.1| bifunctional pilus assembly protein PilQ/type II secretion pathway protein D [Arthrospira platensis NIES-39] Length = 785 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 12/206 (5%) Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D + F + L A + + L +PTL G++AS Sbjct: 561 TDGTLSALGSTTVSVFPFFQYPRRFLSTLQAQIVSGRAKILTDPTLVVQEGETASVQLVQ 620 Query: 292 QHLYKTVSSSTGAT-------SVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV 343 + L ++ T G+ L + G + + I EVS P V Sbjct: 621 EVLQSRTTTFTDTPSGTRETIQPQLVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQV 680 Query: 344 NAGD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 G + R + + L G T++++G+++D + IPLL +PILG+LFR Sbjct: 681 GTGGDDFVLQIFRRNLQSGRIRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFR 740 Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425 S + E E+ + TP ++ Sbjct: 741 RSSTSSERAEVIVLVTPSILDDSDRS 766 >gi|171909982|ref|ZP_02925452.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM 4136] Length = 632 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 25/228 (10%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G + ++ S+ F + V D + ++HALE+ + + Sbjct: 306 GVPGTSNYDNASTSEGFKTTASSSEHNSLYQDGPGLVFDAMQVQAIVHALEQNGIVSQES 365 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----------------------THD 311 PT+ + + + T + S T + + Sbjct: 366 CPTIITEDNEQGIISIVDRFPIVTTNVSQTDAGQTITDEVRYKVDKDDPDAMEEPDKSRE 425 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 GV L TPT+L G + ++++ V+ E V G N P AD +P+G ++ Sbjct: 426 IGVTLTVTPTMLPDGTVRMKLRPRVAKIVELVQGNNGNVYPRVSESTADAISRIPAGQSL 485 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +L G K +P+L +P+L LFR E+ + TP Sbjct: 486 ILGGFYDYSSSNNKNKVPVLGNVPVLKHLFRYKEKTMEKVSLVFIITP 533 >gi|171915532|ref|ZP_02931002.1| fimbrial assembly protein [Verrucomicrobium spinosum DSM 4136] Length = 634 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 104/321 (32%), Gaps = 81/321 (25%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++ A QV +++ + EV +K++G + + S+ A GG+ V Sbjct: 300 DSLVDQAVNATAKQVEIQIRMVEVSDARVKELGIDWLLGQFNVPGSEKIFASGGGQSVPG 359 Query: 242 ------------------------------------------GGDFSVKGVLDRFSFETV 259 G F+V GVL F+ V Sbjct: 360 EVLPFAGRTVTDGLRSATEVLGLRSSGTRIGRALVPGADAKSPGAFAVSGVLTDPQFQGV 419 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------------TGA 304 L L ++ I +A PTL SGQ A+ + Y + + Sbjct: 420 LRGLNQSKGIDVMATPTLFTKSGQRAALKMVKEFRYPKEYDAPETPTRTTGGGLGKPSSP 479 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----------------- 347 S D G+V P + I L + E ++ G Sbjct: 480 RSFEKRDVGIVFEVEPVIGQNKVIELSLSPSFLEFEGFIDYGQDFQNSTTDRLTGQPVYF 539 Query: 348 -------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 P +R + T V + G T+VL G + + + +P++ +P++G F++ Sbjct: 540 TVENQILQPIFRANRISTAVSIWDGCTVVLGGAAFEKRFRADDKVPVVGDLPLIGRTFQS 599 Query: 401 SRFNREETEIFIAATPFLVKP 421 E T + T +V P Sbjct: 600 KVKQVERTNVLFFVTARIVDP 620 >gi|310767456|gb|ADP12406.1| Type III secretion apparatus [Erwinia sp. Ejp617] Length = 588 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 107/299 (35%), Gaps = 28/299 (9%) Query: 128 RRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 + F+ D SN VE + G DS V S+T + S + ++ Sbjct: 270 KSFMPDFSNEEVEADNH-----GSDTASNDSVNIVAYSDTNSLLVMGTERQVSFVEDIIQ 324 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 ++IA + Q+ L + I ++ ++ + ++G Q S + F S Sbjct: 325 AIDIA-KRQIQLSLWIIDISKEDINELGVQWSGSAKIGSTGVIFGTSSLTPESS------ 377 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 +F + AL + + + ++ P + A F + K V +S Sbjct: 378 -------INFLADVSALVESGSAQVISRPEILTQENVPALFDNNSSFYAKLVGERN--SS 428 Query: 307 VTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTV 360 + YG ++ P + I + + + +P + T Sbjct: 429 LEKITYGTMISVLPRLAEHQQEIEMILNIHDGNVPRDASGASAHVDSLPVISNTQISTEA 488 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P G ++++ G ++ + GIPLL IP LG +F S ++ + P L+ Sbjct: 489 RVPLGYSLLVGGYSRNQDEYHNIGIPLLRDIPYLGKIFDYSYTSQTKMVRLFLIHPELL 547 >gi|186685099|ref|YP_001868295.1| type II and III secretion system protein [Nostoc punctiforme PCC 73102] gi|186467551|gb|ACC83352.1| type II and III secretion system protein [Nostoc punctiforme PCC 73102] Length = 792 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 19/215 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATSVT 308 L A + + L +PTL GQ+A+ + + +T S Sbjct: 581 LLASLQAQVQNGNAKILTDPTLIVQEGQTANVNLTQEVVGNIKREIVRDSNLATETISAE 640 Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADT-T 359 G+ L + G + L + V P V G + + R ++ + Sbjct: 641 KDRVGLTLAVKVERIDDNGFVSLSVAPVVKAPQAPATINVGGGGSQQIFLVSERSLNSGS 700 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T++L+G+++D + IP+L +P++G+LFR++ + + E+ + TP ++ Sbjct: 701 IRLRDGQTLILSGIIQDSDRTTVSKIPILGDLPLIGSLFRSTNRSNQRNEVIVLLTPQIM 760 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 +Y+ + + R K+ G Sbjct: 761 DDTENSSYGY---NYTPSPEVRQILERRGLKVPGR 792 >gi|118579256|ref|YP_900506.1| type II and III secretion system protein [Pelobacter propionicus DSM 2379] gi|118501966|gb|ABK98448.1| type II and III secretion system protein [Pelobacter propionicus DSM 2379] Length = 767 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 50/308 (16%), Positives = 99/308 (32%), Gaps = 57/308 (18%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 +V L++ + EV+ + + F S S + S Sbjct: 311 RQVPEVLLEMKVLEVQLNDKFESAFTISTISGGSQTGPDDGQVANPLNTAASAVGSTLLG 370 Query: 251 LDRFSFE----TVLHALERATAI-----------RTLAEPTLTAISGQSASFTSGGQHL- 294 + F+ L + T+A P L A + A G + + Sbjct: 371 MGNFALNSESTLTYQFLSSDLRLRLQLLQQNNNLTTIATPMLMAANNHPARLFIGEETVL 430 Query: 295 ---------------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 V+++ T G L P++ + + +RI E S Sbjct: 431 TTGFTTMTSTSTTTSGVVVNNTLPVPVTETKSVGNTLTILPSINADRSVVMRIVHENSSV 490 Query: 340 VIGVNAGDMP-----------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + +P + K + TV G T+ + G+++ +I + +PLL Sbjct: 491 KTNGASIPLPVGTTVQTVSIDTVNTSKLEGTVLAQDGMTVAVGGMMRTNITDYESKVPLL 550 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP LG F+ + + +TE+ + TP++++ + +A R+ Sbjct: 551 GDIPYLGFFFKQKQKIKTKTELVLLITPYILQA---------------PNLGEAVTRRRL 595 Query: 449 NKIYGPKE 456 N + G Sbjct: 596 NDLSGNTG 603 >gi|259908646|ref|YP_002649002.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96] gi|224964268|emb|CAX55775.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96] gi|283478618|emb|CAY74534.1| Type III secretory protein InvG [Erwinia pyrifoliae DSM 12163] Length = 588 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 107/299 (35%), Gaps = 28/299 (9%) Query: 128 RRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 + F+ D SN VE + G DS V S+T + S + ++ Sbjct: 270 KSFMPDFSNEEVEADNH-----GSDTASNDSVNIVAYSDTNSLLVMGTERQVSFVEDIIQ 324 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 ++IA + Q+ L + I ++ ++ + ++G Q S + F S Sbjct: 325 AIDIA-KRQIQLSLWIIDISKEDINELGVQWSGSAKIGSTGVIFGTSSLTPESS------ 377 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 +F + AL + + + ++ P + A F + K V +S Sbjct: 378 -------INFLADVSALVESGSAQVISRPEILTQENVPALFDNNSSFYAKLVGERN--SS 428 Query: 307 VTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTV 360 + YG ++ P + I + + + +P + T Sbjct: 429 LEKITYGTMISVLPRLAEHQQEIEMILNIHDGNVPRDASGASAHVDSLPVISNTQISTEA 488 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P G ++++ G ++ + GIPLL IP LG +F S ++ + P L+ Sbjct: 489 RVPLGYSLLVGGYSRNQDEYHNIGIPLLRDIPYLGKIFDYSYTSQTKMVRLFLIHPELL 547 >gi|320174026|gb|EFW49196.1| General secretion pathway protein D [Shigella dysenteriae CDC 74-1112] Length = 164 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 2/112 (1%) Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L TP + + + I+ EVS+ + + + RK TTV G IVL GL+ Sbjct: 1 MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 D + +PLL IP++G LF+++ +E+ + + P +++ D Sbjct: 59 DDQAGESVAKVPLLGDIPLIGKLFKSTADKKEKRNLMVFIRPTILRDGMAAD 110 >gi|262277342|ref|ZP_06055135.1| putative outer membrane protein [alpha proteobacterium HIMB114] gi|262224445|gb|EEY74904.1| putative outer membrane protein [alpha proteobacterium HIMB114] Length = 544 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 56/275 (20%), Positives = 105/275 (38%), Gaps = 30/275 (10%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI----------------GF 215 + ++K+++ ++I + V ++ I K+ G Sbjct: 273 TGTKQQLDQTEKLLDKIDIERKS-VMIEAFIVNAEDGFAKKFDANLEMISSTAAGDFRGG 331 Query: 216 QHSITGSSSG-----------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 S G+ G + S +AD + G + G + R + A Sbjct: 332 NQSGIGTIIGATNPQGNQLEVGTPSPSADTSLTAPTLQGGTLIIGSIGRALLSATIAASV 391 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 T T++ P + AI GQ A+ + G Q + +S A T D+ + TPT++ Sbjct: 392 SDTNSETISNPKIFAIDGQQATISQGTQQVRSVPASGGDAGGFETLDFTLNFGVTPTIVG 451 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 ++ L+I G + P +TV L +G +L G+ K+ Q Sbjct: 452 D-KVRLQISLANDSLGQGGTDANTPK-NTENVTSTVVLNNGDVAILGGVYKNTKQDDIIF 509 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL +IP+LG F+ + ++++ I T +V Sbjct: 510 VPLLHRIPVLGEFFKKKTKSDTKSQLLIFVTANIV 544 >gi|149925789|ref|ZP_01914053.1| putative Type II secretory pathway component PulD [Limnobacter sp. MED105] gi|149825906|gb|EDM85114.1| putative Type II secretory pathway component PulD [Limnobacter sp. MED105] Length = 646 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 100/305 (32%), Gaps = 36/305 (11%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V T +S +++ + + + + + Q+ ++ I E+ Sbjct: 263 SGRVITNPESGTVSVIAKPSQHRRVA---------QWLTQIQRRVDRQIVIEAVITEISL 313 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + + G ++ + A G + F+ L LE Sbjct: 314 NDRYERGIDWNVL--RQNGITAGLAVQGLNLGNPALTFNALRNTGNTDTSVALRLLEEFG 371 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------------SSTGATSVTTHDYGVV 315 L+ P + ++ Q+A +Y T ST T V T G + Sbjct: 372 KTEVLSSPRVVTMNQQAAVLKVIDNRVYFTTDVQTSAPTQNSPAFSTFTTQVQTVPVGFL 431 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPS 364 + TP + I LR++ +S V V + +P + R+ ++ + L S Sbjct: 432 MTVTPQIADNNAIQLRVRPTLSRIVGFVQDPNPALQQLNIISRVPEVQTRELESILRLKS 491 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G +L GL + + L GIP + + + ++ E+ + +++ Sbjct: 492 GEMALLGGLRQKENSSLSRGIPGAPE--SVDLITQSKNRGESHIELVVLLKATVLESATA 549 Query: 425 RDLSR 429 L Sbjct: 550 NQLQT 554 >gi|16330870|ref|NP_441598.1| general secretion pathway protein D [Synechocystis sp. PCC 6803] gi|1653364|dbj|BAA18278.1| general secretion pathway protein D [Synechocystis sp. PCC 6803] Length = 785 Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 19/208 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-------SGGQHLYKTVSSSTGATSVT 308 F+ + A R+ + L +PTL G++A S + ++ + Sbjct: 573 FQAQIDAQIRSGNAKILTDPTLIVQEGEAAQVKLTESVIASVDTQVDTQGDTAVRTITPV 632 Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMPSYRVRKADT-T 359 D G+ L+ + G I LR+ V+ P ++ R+ + Sbjct: 633 LEDVGLTLNVIVDRIDDNGFITLRVNPIVASPAGTQVFDSGAGAINEITLINKRELTSGV 692 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V L T +L+G++ + + +P+L +P++GALFR S + +E+ I TP ++ Sbjct: 693 VRLRDDQTFILSGIISELQRSTTSKVPILGDLPVIGALFRQSTDTTDRSEVIILMTPKII 752 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 Y+ + F + Sbjct: 753 HDSTEAQF---GFRYNPDAATAEFLRQK 777 >gi|330963695|gb|EGH63955.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 195 Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 10/190 (5%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I + Sbjct: 16 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 75 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 +G++ L + + A + L+ S R+ V+ G V+ + ++ L Sbjct: 76 EGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 134 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + +N AG QV ++V AEV R L + G + ++ Sbjct: 135 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 185 Query: 225 GPSKSFAADF 234 S Sbjct: 186 TFSFGLLTGG 195 >gi|320184380|gb|EFW59192.1| General secretion pathway protein D [Shigella flexneri CDC 796-83] Length = 164 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 2/112 (1%) Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L TP + + + I+ EVS+ + + + RK TTV G IVL GL+ Sbjct: 1 MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 D + +PLL IP++G LF+++ +E+ + + P ++ D Sbjct: 59 DDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILHDGMAAD 110 >gi|160875361|ref|YP_001554677.1| YscC/HrcC family type III secretion outer membrane protein [Shewanella baltica OS195] gi|160860883|gb|ABX49417.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica OS195] gi|315267560|gb|ADT94413.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica OS678] Length = 491 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 31/263 (11%) Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192 V + G+V +++ + +++ ++ N + + G Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259 Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 + + V+I +V KQ+G S + G S SF + + D Sbjct: 260 RQLDTKPSMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + +F L+ALE+ + + L+ P++ ++ A K Sbjct: 313 STVIGNTGNFMMRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKL--EGDKVAK 370 Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362 + + G +L TP ++ + L + + + V+ + +P + + T L Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430 Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385 SG +++L G ++D + + I Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453 >gi|113475300|ref|YP_721361.1| type II and III secretion system protein [Trichodesmium erythraeum IMS101] gi|110166348|gb|ABG50888.1| type II and III secretion system protein [Trichodesmium erythraeum IMS101] Length = 801 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 15/215 (6%) Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + +L F + L A + + L +PTL G+ AS Sbjct: 564 GVNPTNGLLDVTPGNADFGLFPQILYPKRFLSQLRATIVSGNAKILTDPTLVVQEGEVAS 623 Query: 287 FTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSE 338 + S+ T +V D G+ L + G + + + EVS Sbjct: 624 LKLVNNIVRSIDSNFTDDGGTSRETRTVQFEDVGLNLVIQVERIDDNGFVTVTVNPEVSF 683 Query: 339 PVIGVNAGDMPS------YRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 V S RK + + L G T++++G++++ + +PLL + Sbjct: 684 ISDRVRTDANNSSEFGTEIASRKVQSGRIRLRDGQTLIISGIIQEQERTAVTKVPLLGDL 743 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 PI+GALFR+S+ E E + TP ++ Sbjct: 744 PIIGALFRSSQNQNERAETIVLLTPQILDDGDRSS 778 >gi|167466375|ref|ZP_02331079.1| putative outer membrane secretin family protein [Yersinia pestis FV-1] Length = 140 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 9/141 (6%) Query: 335 EVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS N PS R+RKA+TTVEL G + +L GL+ ++ + IP + I Sbjct: 5 EVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDI 64 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P+LGALFRN++ R ++E+ + AT LVKPV+ R + PD + + FF N Sbjct: 65 PLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFF----NLT 118 Query: 452 YGPKEASEVEGQNYKGAIGFI 472 + + + GFI Sbjct: 119 NIKDAKRRKQAKEFLQKGGFI 139 >gi|304408552|ref|ZP_07390173.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica OS183] gi|307305380|ref|ZP_07585128.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica BA175] gi|304352373|gb|EFM16770.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica OS183] gi|306911683|gb|EFN42108.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica BA175] Length = 491 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 31/263 (11%) Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192 V + G+V +++ + +++ ++ N + + G Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259 Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 + + V+I +V KQ+G S + G S SF + + D Sbjct: 260 RQLDTKPTMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + +F L+ALE+ + + L+ P++ ++ A K Sbjct: 313 STVIGNTGNFMLRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKL--EGDKVAK 370 Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362 + + G +L TP ++ + L + + + V+ + +P + + T L Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430 Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385 SG +++L G ++D + + I Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453 >gi|297567918|ref|YP_003686888.1| type II and III secretion system protein [Meiothermus silvanus DSM 9946] gi|296852367|gb|ADH65380.1| type II and III secretion system protein [Meiothermus silvanus DSM 9946] Length = 670 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 66/330 (20%), Positives = 122/330 (36%), Gaps = 24/330 (7%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+ + + E + R + + V + L G + Sbjct: 310 GQLLATRPPEPKPVEKPQEKPVERSLPLGYAKATTV---IDLVGKLLPESKEVALAADER 366 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T Q A ++ ++++ L+ QV L+V + ++ +IG Sbjct: 367 TNTVLLRGPQAAVAAIERLVGDLDRPIP-QVDLQVRVEQLSSSNGDEIGAALEA------ 419 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + + + G G L AL+ A R+L + T SG+S Sbjct: 420 -ALGPLSLKADPGSGQYGLGLEVGKTGLLKLNAALKALQSAGKGRSLIDSRFTVSSGESV 478 Query: 286 SFTSGGQHLYK-------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + SGG L S T T + ++G+ L TPTV+ +I L + + Sbjct: 479 NLLSGGSLLIPLTSTGTGGSSGGTSTTGLQNVEFGLELKLTPTVIPGDKIQLGVNINLGS 538 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 V + ++ + V L SG + VL G++ + ++ + GIP+L +P++G LF Sbjct: 539 -APTVGPNNSTLVPKQQLTSNVLLSSGNSAVLGGVISVEEKESRSGIPVLMDLPLIGGLF 597 Query: 399 RNSRFNREETEIFIAAT-----PFLVKPVA 423 + + +T + I T P VKP + Sbjct: 598 SQTVKSSSQTHLLIVVTAVSRLPEAVKPAS 627 >gi|78186891|ref|YP_374934.1| Type II secretory pathway component PulD-like [Chlorobium luteolum DSM 273] gi|78166793|gb|ABB23891.1| Type II secretory pathway component PulD-like protein [Chlorobium luteolum DSM 273] Length = 588 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 101/273 (36%), Gaps = 20/273 (7%) Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA----EVRRDILKQI--GFQHSI 219 ++ + + + N+ D V + I E+ + G Sbjct: 230 EYIRSNPDSMSEGQNPGAASMEENLPMPDMVIIDAVILRNEDEITHSKGVNLLNGLSLQF 289 Query: 220 TGSS---------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER-ATAI 269 SS S + D +++ ++ G++ + ++ ++ I Sbjct: 290 GNSSNPAISFNRAYSSSWTHNPDGTDDTIAKSITNTITGIISVPALTYSMNIFNMGSSKI 349 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 +A PTLT + + F SG Q S+ + + GV +H P ++ ++ Sbjct: 350 DVIARPTLTGMLNIDSEFFSGNQIDAAVAGSADSSPISINKEIGVTMHVRPNEITRNKVK 409 Query: 330 LRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L ++ S + M + K T V++ G T++L+GL + + ++G+ Sbjct: 410 LHVEVSRSFLDTTDKDKITYQYMVTTSNTKVTTDVDIAFGETMILSGLYEREAVDTRDGV 469 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 P+L IP+L LF + + I TP++ Sbjct: 470 PILQDIPLLQYLFSKKTERLFQRSVIILLTPYI 502 >gi|126174170|ref|YP_001050319.1| YscC/HrcC family type III secretion outer membrane protein [Shewanella baltica OS155] gi|125997375|gb|ABN61450.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica OS155] Length = 491 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 31/263 (11%) Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192 V + G+V +++ + +++ ++ N + + G Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259 Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 + + V+I +V KQ+G S + G S SF + + D Sbjct: 260 RQLDTKPTMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + +F L+ALE+ + + L+ P++ ++ A K Sbjct: 313 STVIGNTGNFMLRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKL--EGDKVAK 370 Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362 + + G +L TP ++ + L + + + V+ + +P + + T L Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430 Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385 SG +++L G ++D + + I Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453 >gi|327538876|gb|EGF25517.1| general secretion pathway protein D [Rhodopirellula baltica WH47] Length = 1261 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 62/320 (19%), Positives = 103/320 (32%), Gaps = 61/320 (19%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 AV ++T + +++++ L+ V +K IAEVR D +IG + + Sbjct: 730 AVAEAQTNSVLLSVSPRIYEEVRQLIDRLD-RRPPMVLIKTLIAEVRLDDGFEIGGEFGL 788 Query: 220 TGS-------------SSGPSKSFAADFGGKFVSEGGDFS-------------------- 246 S + P+ +FGG + F Sbjct: 789 QDSLLFDRGKATGAIATDNPASDPGFNFGGTNLPNSNSFGQESLASQGLTNFGATATQLT 848 Query: 247 ---------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 S L L A ++ L+ P + G T Sbjct: 849 RVGGLNSGGFVFSAASESVNLFLRTLRVANRLQILSRPEIMTADNTEGYVQVGQNFPRPT 908 Query: 298 --------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347 +S+ + D G++L TP V + G I + I S V Sbjct: 909 ELTFTSTGGNSTQPIIGIEDVDIGIILRVTPRVGADGMIFMAIDATRSAINNDVGQTIGS 968 Query: 348 --------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +P+ A TV G T+V GL++ Q +P L+ IP+LG F+ Sbjct: 969 FDNGDPIFVPAIDTTTAQATVTAFDGQTVVFGGLIQKYRQNRTSRVPYLADIPLLGTFFK 1028 Query: 400 NSRFNREETEIFIAATPFLV 419 + +E+ + TP LV Sbjct: 1029 YDSEIEQRSELLVVMTPILV 1048 >gi|257061946|ref|YP_003139834.1| type II and III secretion system protein [Cyanothece sp. PCC 8802] gi|256592112|gb|ACV02999.1| type II and III secretion system protein [Cyanothece sp. PCC 8802] Length = 899 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 15/179 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310 F + + A +++ + L +PTL GQ A+ + + + + V T Sbjct: 690 FLSQIEATIQSSNGKVLTDPTLVVQEGQQATVKLTQKVIENITTQVDPLSGVRTTTPVLS 749 Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVS--------EPVIGVNAGDMPSYRVRKADT-TV 360 D G+ L + G I L + ++ + + R+ + + Sbjct: 750 DAGLTLTIDIDKIDDNGFISLTVSPTIAAIGDVQPFDSGADGGFNQLFLLARRELTSGLI 809 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G T++L+G++ + Q + +P+L IP+LGALFR+ + +E+ + TP ++ Sbjct: 810 RLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTPQIL 868 >gi|75909894|ref|YP_324190.1| type II and III secretion system protein [Anabaena variabilis ATCC 29413] gi|75703619|gb|ABA23295.1| type II and III secretion system protein [Anabaena variabilis ATCC 29413] Length = 811 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 16/210 (7%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + G + + L A + + L +PTL GQ A Sbjct: 572 NADGTTTITQGTLGTATTSLPTIYQFPKRLL-ASLQAQVQNGNAKVLTDPTLIVQEGQQA 630 Query: 286 SFTSGGQHLYKTVSSSTGATSVTT-----------HDYGVVLHF-TPTVLSPGRIGLRIQ 333 + S +++ + + G+ L+ + G + L + Sbjct: 631 VVKLTTEVFGGFEESGQSSSTGSNTQSSSTKKPIIKEAGLSLNVKVERIDDNGFVSLSVA 690 Query: 334 TEVSEP--VIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 VS P + G + R + + L G T++L+G++++ + +P+L Sbjct: 691 PTVSAPGGSTQTSDGQITLLSARSLQSGLIRLRDGQTLILSGIIQESDRSTVSKLPILGD 750 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420 +P++G+LFR + E E+ + TP ++ Sbjct: 751 LPLIGSLFRKTNRTNERREVIVLLTPQVMD 780 >gi|17228526|ref|NP_485074.1| general secretion pathway protein D [Nostoc sp. PCC 7120] gi|17130377|dbj|BAB72988.1| general secretion pathway protein D [Nostoc sp. PCC 7120] Length = 823 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 15/180 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVT 308 L A + L +PTL GQ+A+ + + S +T + Sbjct: 613 LLANLQAQVTNGNAKILTDPTLIVQEGQTANVKLTQEVVGNITSETTRGDGASTQTVTAE 672 Query: 309 THDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADT-TV 360 D G+ L + G + L + V P + N+ + R ++ + Sbjct: 673 KTDVGLTLAVKIDRIDDNGFVSLSVAPVVKAPQSSAVINVSGNSQTIFLVSERSLNSGMI 732 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G T++L+G+++D + IP+L IP++G+LFR + E E+ + TP ++ Sbjct: 733 RLRDGQTLILSGIIQDQDRTSVSKIPILGDIPLIGSLFRKTNRTNERREVIVLLTPQVMD 792 >gi|218248885|ref|YP_002374256.1| type II and III secretion system protein [Cyanothece sp. PCC 8801] gi|218169363|gb|ACK68100.1| type II and III secretion system protein [Cyanothece sp. PCC 8801] Length = 743 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 15/179 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310 F + + A +++ + L +PTL GQ A+ + + + + V T Sbjct: 534 FLSQIEATIQSSNGKVLTDPTLVVQEGQQATVKLTQKVIENITTQVDPLSGVRTTTPVLS 593 Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVS--------EPVIGVNAGDMPSYRVRKADT-TV 360 D G+ L + G I L + ++ + + R+ + + Sbjct: 594 DAGLTLTIDIDKIDDNGFISLTVSPTIAAIGDVQPFDSGADGGFNQLFLLARRELTSGLI 653 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G T++L+G++ + Q + +P+L IP+LGALFR+ + +E+ + TP ++ Sbjct: 654 RLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTPQIL 712 >gi|330882763|gb|EGH16912.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 215 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 10/203 (4%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G + + + + +L V V+V++P AD+ V SP +Y+FG+ GQ ++I + Sbjct: 23 GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGQAAGQTSLIALDS 82 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 DG++ L + + A + L+ S R+ V+ G V+ + ++ L Sbjct: 83 DGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + +N AG QV ++V AEV R L + G + ++ Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192 Query: 225 GPSKSFAADFGGKFVSEGGDFSV 247 S + GG +V Sbjct: 193 TFSFGLLTGGALAADAAGGASNV 215 >gi|325275757|ref|ZP_08141634.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51] gi|324099108|gb|EGB97077.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51] Length = 310 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 64/318 (20%), Positives = 108/318 (33%), Gaps = 79/318 (24%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I I L++PV ++ V V +P ADV R + + G ++++ Sbjct: 39 IEIDQGLQQELRLPVAIERVAVGEPKVADVQASGERGVVITAVGQGNTSLMMW------- 91 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 T + V + + Sbjct: 92 ----------------------------------------TACTPSPHKAMVFVRGRASA 111 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 ++ + S ++ QV + EVRR K+ G + GS++ S Sbjct: 112 DMAQDSFLPSQDTQL--------PSQVQADIRFVEVRRSKYKEAGARLFFKGSNNSLIGS 163 Query: 230 FAADFGG------------------------KFVSEGGDFSVKGVLDRFSFETVLHALER 265 + F++ F +++ALE Sbjct: 164 PGTVPNTVVRPDYVPGAQTGENPIAYADVRPGIPLDNSVFNIVWGGGSSRFLAMINALEN 223 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + TLA P+LT +SGQ+ASF +GG+ S+ + S+ ++GV L TPTV+S Sbjct: 224 SGFAYTLARPSLTVLSGQTASFLAGGEIPIPVPSAGSDNVSIEYKEFGVRLALTPTVISQ 283 Query: 326 GRIGLRIQTEVSEPVIGV 343 GRI L++ EVSE Sbjct: 284 GRITLKVAPEVSELDYSN 301 >gi|254448224|ref|ZP_05061686.1| Bacterial type II and III secretion system protein [gamma proteobacterium HTCC5015] gi|198262091|gb|EDY86374.1| Bacterial type II and III secretion system protein [gamma proteobacterium HTCC5015] Length = 629 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 86/235 (36%), Gaps = 12/235 (5%) Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 ++ F + SV V + L+A + LA PTL A +G Sbjct: 351 NTANGDIFDPRLNTNQETITNFISVPAVNYNLNI---LNA--KDGVNEILARPTLVARAG 405 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Q++ F SG + VS G + + GV L TP G I L+++ E + Sbjct: 406 QTSEFFSGVEVSAAAVSGGAGDSISVEKEIGVKLAVTPEFGPDGSIILQVEAERTFLTTP 465 Query: 343 VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ + V + G T++L GL + + + +G+P+L IP++ F Sbjct: 466 SSSVLFEFRLDTTKTTVNANVAMNYGQTLILGGLNERETENDSDGVPILRDIPLINLFFS 525 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 + + I TP A + P++ + + ++ Y Sbjct: 526 RKTQRDFKKSVMILLTPR----PASYMYTDPEESRASIEARSEAIRGQLQDRYQT 576 >gi|56751665|ref|YP_172366.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC 6301] gi|56686624|dbj|BAD79846.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC 6301] Length = 725 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 65/466 (13%), Positives = 146/466 (31%), Gaps = 57/466 (12%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD-----VVVHSP 84 ++ + + I + + + V + A + Sbjct: 263 AQSAFNYVLQIAGLQASRRDNVILVGRNLPPSAGGLVSRTFRLNQAVAQNVAGYLTTLGA 322 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 ++ F K V + + + I L T + + ++ Sbjct: 323 NSVVSFTKKVCVST-GVQDTTATGGGAGTGAGQGQIQTLSQTSAQCFDEPEVK------E 375 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS--SKKVMNLLNIAGEDQVTLKVTI 202 + + G + ++ + + + ++ L++ + Q ++ V + Sbjct: 376 LKVPGTPAGPLPLKNISITADIRTNSLSIVGDPQAINFATGLIQQLDLR-KRQASVNVKV 434 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKS----------------------FAADFGGKFVS 240 ++ + L I S ++ S S F ++ Sbjct: 435 IDLDLNDLNAIATSFSFGIGNTLFSGSGGLRTTVIDNAGSVIQPPNDSVFNPSNLPAGIN 494 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +F L A + L +PTL G+ + Q + K S Sbjct: 495 PANPLLALPNQLTNNFLGALSASIINNKTKLLTDPTLIIQEGERSEVKLTSQVVQKIESE 554 Query: 301 STGA--------TSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVN 344 +T ++ D G+ L + G I L + +S P N Sbjct: 555 TTTNGSGPPTVSRTIDLADVGLQLTINIERIDDNGFITLTVLPAISSPQDVVTFGDPNTN 614 Query: 345 AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + R+ + + L T++L+G+++D+ ++ IPLL +P++G+LFR S Sbjct: 615 GVLTTLIKKREVSSGKIRLRDSQTLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYT 674 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 +R+ E+ + TP + +A D + Y A++ N + Sbjct: 675 DRQRREVVVVITPKI---LADTDATVFGYGYQPSPPAQSVLNNTLQ 717 >gi|85058539|ref|YP_454241.1| type III secretion apparatus InvG [Sodalis glossinidius str. 'morsitans'] gi|84779059|dbj|BAE73836.1| type III secretion apparatus InvG [Sodalis glossinidius str. 'morsitans'] Length = 586 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 81/235 (34%), Gaps = 23/235 (9%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + Q+ L + I ++ ++ + Q+G + + S F + S Sbjct: 328 AKQQIQLSLWILDIDKEEVNQLGVDWAARANIGSGSIEF-------------NSSSLSAS 374 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + F + AL + +A P + A F + + T + Sbjct: 375 TSYQFLAKVSALASRKDAQVVAHPEILTQENIPALFDNNSSFYVQVKGERTAT--LEKIT 432 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTVELPS 364 YG ++ P + S + + + ++ + + + +P + T +P Sbjct: 433 YGTLISVLPRLSSGSK-EIEMILDIQDGGLMTGDDNAVMQVAELPLVNTTQISTEARVPK 491 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G ++++ G +D GIP+L IP LG LF ++ P L+ Sbjct: 492 GSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLFDYRYKQTKQFVRMFLIQPKLL 546 >gi|209528276|ref|ZP_03276739.1| type II and III secretion system protein [Arthrospira maxima CS-328] gi|209491296|gb|EDZ91688.1| type II and III secretion system protein [Arthrospira maxima CS-328] Length = 737 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 12/205 (5%) Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 D + F + L A + + L +PTL G+SAS Q Sbjct: 514 DGSITALGSTTFSVFPFFQYPRRFLSTLQAQIVSGRAKILTDPTLVVKEGESASVQLVQQ 573 Query: 293 HLYKTVS-------SSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVN 344 L + S + G+ L + G + + I EVS P V Sbjct: 574 VLQSRTTIITDTPSGSRETIQPDPTNVGLTLGVNVERIDDNGFVTMSINPEVSSPGARVA 633 Query: 345 AGDMPSY---RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G+ + R + + L G T++++G+++D + IPLL +PI+G+LFR Sbjct: 634 TGNDDFFLQVFRRSLSSGRIRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPIVGSLFRR 693 Query: 401 SRFNREETEIFIAATPFLVKPVAMR 425 S + E E+ + TP ++ Sbjct: 694 STTSSERAEVIVLVTPNILDDSDRS 718 >gi|218660088|ref|ZP_03516018.1| pilus assembly secretion protein [Rhizobium etli IE4771] Length = 157 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 83/160 (51%), Positives = 106/160 (66%), Gaps = 4/160 (2%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S G K + ++ T L+ALE+A +RTLAEPTLTAISGQ+A+F SGGQ LY T Sbjct: 2 SGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATFNSGGQQLYSTT- 60 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + G +V +YG+ L F P VLS GRI L I+T VSEPV G Y+ R A+T+ Sbjct: 61 DNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNAT---YQRRSAETS 117 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR Sbjct: 118 VELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFR 157 >gi|81301259|ref|YP_401467.1| general secretion pathway protein D [Synechococcus elongatus PCC 7942] gi|81170140|gb|ABB58480.1| general secretion pathway protein D [Synechococcus elongatus PCC 7942] Length = 771 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 65/466 (13%), Positives = 146/466 (31%), Gaps = 57/466 (12%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD-----VVVHSP 84 ++ + + I + + + V + A + Sbjct: 309 AQSAFNYVLQIAGLQASRRDNVILVGRNLPPSAGGLVSRTFRLNQAVAQNVAGYLTTLGA 368 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 ++ F K V + + + I L T + + ++ Sbjct: 369 NSVVSFTKKVCVST-GVQDTTATGGGAGTGAGQGQIQTLSQTSAQCFDEPEVK------E 421 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS--SKKVMNLLNIAGEDQVTLKVTI 202 + + G + ++ + + + ++ L++ + Q ++ V + Sbjct: 422 LKVPGTPAGPLPLKNISITADIRTNSLSIVGDPQAINFATGLIQQLDLR-KRQASVNVKV 480 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKS----------------------FAADFGGKFVS 240 ++ + L I S ++ S S F ++ Sbjct: 481 IDLDLNDLNAIATSFSFGIGNTLFSGSGGLRTTVIDNAGSVIQPPNDSVFNPSNLPAGIN 540 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +F L A + L +PTL G+ + Q + K S Sbjct: 541 PANPLLALPNQLTNNFLGALSASIINNKTKLLTDPTLIIQEGERSEVKLTSQVVQKIESE 600 Query: 301 STGA--------TSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVN 344 +T ++ D G+ L + G I L + +S P N Sbjct: 601 TTTNGSGPPTVSRTIDLADVGLQLTINIERIDDNGFITLTVLPAISSPQDVVTFGDPNTN 660 Query: 345 AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + R+ + + L T++L+G+++D+ ++ IPLL +P++G+LFR S Sbjct: 661 GVLTTLIKKREVSSGKIRLRDSQTLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYT 720 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 +R+ E+ + TP + +A D + Y A++ N + Sbjct: 721 DRQRREVVVVITPKI---LADTDATVFGYGYQPSPPAQSVLNNTLQ 763 >gi|318607000|emb|CBY28498.1| general secretion pathway protein D [Yersinia enterocolitica subsp. palearctica Y11] Length = 531 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 12/216 (5%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----S 227 + +V+ L+I QV ++ I E + +G Q + + Sbjct: 317 TADPKVMKELDQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKT 375 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 S + + + +++ + AL + LA P++ + A F Sbjct: 376 NSIQTNNNSGNPIPMMMAGLTAGFYKGNWDGLFIALATNSNNNILATPSIVTLDNMEAEF 435 Query: 288 TSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G + T + +T S++ GV+L P + + L I+ EVS Sbjct: 436 NVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSS 495 Query: 344 NAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKD 376 + + R + V + SG T+V+ GLL Sbjct: 496 DVNANNLGSVFNKRVVNNAVLVKSGETVVVGGLLDK 531 >gi|42527064|ref|NP_972162.1| hypothetical protein TDE1556 [Treponema denticola ATCC 35405] gi|41817488|gb|AAS12073.1| conserved domain protein [Treponema denticola ATCC 35405] Length = 400 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 101/265 (38%), Gaps = 7/265 (2%) Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + T + +N +K + + + + + ++ + V+ + + + + Sbjct: 112 ESIVVTGNPNLIFFRGSNIKREKFLKEMELIDKPKAQIRYQLLVVQYEKSEN--INWAKS 169 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 ++F G + + F L+ R LA+ TL I Sbjct: 170 LEVKKAKGKPMSEFSGIMSNIFNINFDIVSKFGYQFIAKLNFELAENKARVLADTTLNGI 229 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 +G+ F + Y + + + G++L+ V G I + + +V Sbjct: 230 TGEEVRFQNTNTFRYIDKTLDSNGKPLYGSMREITSGLLLNIKGNVSGDGMITMEVNAQV 289 Query: 337 S-EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S + GV +G +P + T V PSG I++ GLL+ + ++ IP L IPI G Sbjct: 290 SKQGSGGVTSGVLPPTSEKIVKTKVRTPSGKPIIIGGLLQVEQNSSEKKIPGLGDIPIAG 349 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 F++ + TE+ I P++ + Sbjct: 350 LAFKDINGSETVTEMVIYIVPYIHR 374 >gi|45504747|gb|AAS66838.1| YsaC [Sodalis glossinidius] Length = 500 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 81/235 (34%), Gaps = 23/235 (9%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + Q+ L + I ++ ++ + Q+G + + S F + S Sbjct: 242 AKQQIQLSLWILDIDKEEVNQLGVDWAARANIGSGSIEF-------------NSSSLSAS 288 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + F + AL + +A P + A F + + T + Sbjct: 289 TSYQFLAKVSALASRKDAQVVAHPEILTQENIPALFDNNSSFYVQVKGERTAT--LEKIT 346 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTVELPS 364 YG ++ P + S + + + ++ + + + +P + T +P Sbjct: 347 YGTLISVLPRLSSGSK-EIEMILDIQDGGLMTGDDNAVMQVAELPLVNTTQISTEARVPK 405 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G ++++ G +D GIP+L IP LG LF ++ P L+ Sbjct: 406 GSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLFDYRYKQTKQFVRMFLIQPKLL 460 >gi|289675697|ref|ZP_06496587.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 137 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 4/137 (2%) Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L++ Sbjct: 1 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 60 Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EVSE I + +P+ +R+ DT++ L G + V++GL+ + P L Sbjct: 61 APEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGL 120 Query: 389 SKIPILGALFRNSRFNR 405 IPILGA FR+S+ R Sbjct: 121 GDIPILGAFFRSSQIQR 137 >gi|159903356|ref|YP_001550700.1| Type II secretory pathway, component PulD [Prochlorococcus marinus str. MIT 9211] gi|159888532|gb|ABX08746.1| Type II secretory pathway, component PulD [Prochlorococcus marinus str. MIT 9211] Length = 575 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 92/288 (31%), Gaps = 41/288 (14%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + Y S ++K + L++ QV L V + +V + + + S + Sbjct: 270 GDPYLVSIAEKYLKQLDLRQR-QVALSVKVIDVLLNNTTDMKNAFEYGIGDNYIINSESK 328 Query: 233 DF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS--- 284 F + L F + + LA PTL Q Sbjct: 329 GLMYMFGNKSFSPTDFSVTDSFSLASRKFMGWFRSKVLTNNAKILANPTLILGESQEEIL 388 Query: 285 ---------------------------ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 + + + + T G+ Sbjct: 389 GGSEVSGSLGLGDSTIGRPWANEGFVKVGTSVVTNYTISSAEDGSTLCEPQTDIAGITFG 448 Query: 318 FTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADT-TVELPSGGTIVLAG 372 + G + + +S + GD + R+ DT + + G T+VL G Sbjct: 449 AKVHKIDDNGYVTFSLSPNISAVSETQSIGDCGNISTLSIRRLDTGNIRVRDGDTLVLTG 508 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++K+D + P+L IP+ G LFR + R+++E+ I TP ++K Sbjct: 509 VIKEDDTKAITKTPVLGDIPLFGRLFRTNSTVRKKSELIIMVTPKVIK 556 >gi|153848715|ref|ZP_01993991.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810] gi|149744675|gb|EDM56143.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810] Length = 132 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 66/131 (50%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 ++ G+ +S+ ++ L + + V + DP D+VV ++L GK +G Sbjct: 2 SVHAATAQSGRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGTT 61 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 NV + G+ + ++ + D+ L+ L +F+ D +I V + VVL G+V + Q+ Sbjct: 62 NVSVWDSRGRLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQNM 121 Query: 158 QRAVELSETFL 168 AV+++ETF Sbjct: 122 DIAVKIAETFA 132 >gi|197106378|ref|YP_002131755.1| hypothetical protein PHZ_c2917 [Phenylobacterium zucineum HLK1] gi|196479798|gb|ACG79326.1| hypothetical protein PHZ_c2917 [Phenylobacterium zucineum HLK1] Length = 612 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 70/238 (29%), Gaps = 9/238 (3%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGGKFVSEGGDF 245 + I G + G+ ++S++ S Sbjct: 291 PLPRMAMVDAVILRTDDTRSATNGVNLLKNLSAYVGNGITVTRSWSTGQPATKTSVVTQN 350 Query: 246 SVKGVLDRFSFETVLH-ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 G L+ A LA+PTL A+ Q A F SG Sbjct: 351 LGLGSSVGGVLSYSLNIANATEQRAEILAQPTLLALDRQPAQFFSGSNVTIALNGGPGSY 410 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVE 361 SV GV L TPT + + + ++ S E V Sbjct: 411 GSVQNQPVGVSLSVTPTFVDDDSMLVSVKAVRSFFEETADSATFVQSVQTSRNMVTANVL 470 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L T+VL+GL + ++ + PLL IP + LF + I TP V Sbjct: 471 LRFDQTLVLSGLSEREVTSIDSRTPLLGDIPGVQHLFATKEDRDYTRSVVIMLTPRRV 528 >gi|222100907|ref|YP_002535475.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga neapolitana DSM 4359] gi|221573297|gb|ACM24109.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga neapolitana DSM 4359] Length = 380 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 74/206 (35%), Gaps = 12/206 (5%) Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L++ G + S G + + + +S + + + Sbjct: 179 LRKWGISWQYSNQSEGENFTINLLE--------KALDIVFNTLDYSVLSHIELSIGDGSA 230 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + LA P L SG S F++ Q Y T V + + G + P +L + Sbjct: 231 KLLANPRLRLQSGSSGKFSAKTQRNYITT--ENDKKVVKSVELGTEVEIKPFLLRDNTVS 288 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 L ++ S + +P + + TV L G T+ + G+ D + + +PLL Sbjct: 289 LTVKITSSNALDKNEG--LPDTTSQSIEGTVRLKLGETVAIGGIGFDTYTTVTDKVPLLG 346 Query: 390 KIPILGALFRNSRFNREETEIFIAAT 415 IP+ G LF+ + EI I Sbjct: 347 DIPVFGYLFKKETERKIHKEILILVK 372 >gi|300867368|ref|ZP_07112024.1| type II and III secretion system protein [Oscillatoria sp. PCC 6506] gi|300334619|emb|CBN57192.1| type II and III secretion system protein [Oscillatoria sp. PCC 6506] Length = 810 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 11/184 (5%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--- 310 F + L A + + L +PTL G++A Q + + +T T +T Sbjct: 603 TRFLSQLQAQIQTNNAKILTDPTLIVQEGETAGVNLTEQVITNITTQTTAGTGLTQQTVT 662 Query: 311 ----DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADT-TVEL 362 + G+ L+ + G I +RI V + + R + + L Sbjct: 663 AEKGNAGLTLNVEVTRIDDNGFISMRINPTVRAIARTSPLGNNLISLLQERSLSSGLIRL 722 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G T++++G++ D + IP+L +PI+GALFR++ + + E+ + TP ++ Sbjct: 723 RDGQTLIVSGIINDTERVTASKIPILGDLPIIGALFRSTSKSNQRAEVIVLVTPQILDDS 782 Query: 423 AMRD 426 Sbjct: 783 DRSS 786 >gi|257458871|ref|ZP_05623994.1| bacterial type II and III secretion system protein [Campylobacter gracilis RM3268] gi|257443859|gb|EEV18979.1| bacterial type II and III secretion system protein [Campylobacter gracilis RM3268] Length = 389 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 83/228 (36%), Gaps = 11/228 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +QV K+TI E + K IG + G ++S F + + Sbjct: 163 EQVNFKLTILETNTNDYKDIGSHLNSLGDVV--TRSDLNYFINLITMPYSAETNVVTTKK 220 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSV 307 F VL L++ P L A SG F+S Y T + + S Sbjct: 221 RGFYGVLSLLQQNGVTTIKQSPFLVAKSGAEVYFSSVENVPYLTNTSTYTQNGTATQNSY 280 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D G+ + P VL + + V + + N P ++ + L G Sbjct: 281 EYKDVGLKIKIRPVVLQNSNVDFSLDLVVEDLLDTQNTLT-PRTSKKELKSNYSLKRGEL 339 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +VL+G+ KD + G+PLL IPIL LF + + + I T Sbjct: 340 LVLSGINKDVAYSKRNGVPLLKDIPILKYLFSIEQNYKSTS--IITLT 385 >gi|270488174|ref|ZP_06205248.1| type IV pilus secretin PilQ [Yersinia pestis KIM D27] gi|270336678|gb|EFA47455.1| type IV pilus secretin PilQ [Yersinia pestis KIM D27] Length = 422 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 63/364 (17%), Positives = 130/364 (35%), Gaps = 19/364 (5%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85 P E A +++ + +++++ + + + + +V P +A ++ Sbjct: 63 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 118 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 L + G ++ + ++ A +TL A++ + + Sbjct: 119 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 174 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L G + + S A + + T L + A + + L + QV L I + Sbjct: 175 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 230 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262 + L+++G + G G + DF SV + E L A Sbjct: 231 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 289 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE+ + +A P L Q+AS G Y A ++ + + + TP + Sbjct: 290 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 349 Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L G+I L ++ + P I + +M ++ T V + G TIVL G+ + + Sbjct: 350 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKNAR 409 Query: 381 LKEG 384 + Sbjct: 410 VLIK 413 >gi|304415540|ref|ZP_07396167.1| type III secretion apparatus protein [Candidatus Regiella insecticola LSR1] gi|304282604|gb|EFL91140.1| type III secretion apparatus protein [Candidatus Regiella insecticola LSR1] Length = 360 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 72/235 (30%), Gaps = 19/235 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + L V I ++ + + G + + + GKF + LD Sbjct: 92 IELSVWIIDLEKTA---LXXXXXXXXXXLGVNFNVRININGKFGASFNGGG-ASTLDGSR 147 Query: 256 FETVLHALERATAIRTLAEPT-LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A F + ++ + YG Sbjct: 148 FIASIMALSQQNKANIVSRPDCVLTQENIPAIFDNNRAFYS--EVKGDRVATLESVTYGT 205 Query: 315 VLHF---------TPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVEL 362 + P +I + + E + + +P K T + Sbjct: 206 SVSVLXXXXXXXXXPRFAEQSQIEMMLNIEDGNEIAQNDNEIKTSLPKVGRTKISTVARV 265 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 P G ++++ G +D + IP L +P +G LFR + T P Sbjct: 266 PKGKSLLIGGYTRDSSNNTEAKIPGLGSLPWVGGLFRYRQSASANTVRVFLIQPR 320 >gi|37525675|ref|NP_929019.1| hypothetical protein plu1738 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785103|emb|CAE14031.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 534 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 79/241 (32%), Gaps = 19/241 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L V I + D Q G S+ S+ S + Sbjct: 298 QVVLNVKILNLTFDRADQYGVDWSLAYKSARIGLSNESGNSVIDDGGVSTNIHILKGPFS 357 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------- 307 ++ AL + + +P++T ++ Q+ Q Y S+T V Sbjct: 358 DSTLLIKALSAQGKVSIVTQPSVTTLNLQAVPMQVATQTGYVASISNTSTPQVGTSVGIE 417 Query: 308 -TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADTT 359 T G + P ++ +I L+ +S+ +P+ +R Sbjct: 418 PATVTTGFNMLMLPYAMADKQILLQYNISLSDLKRLEKFGKEETGQVQLPTIDLRAFSQK 477 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V L SG T+VL+G + + G L P L + + R I + TP +V Sbjct: 478 VRLHSGETLVLSGFEQQSDTSDRSG---LGS-PDNQLLGGSRQGKRNHNVIVVMITPIVV 533 Query: 420 K 420 Sbjct: 534 D 534 >gi|294507285|ref|YP_003571343.1| general secretion pathway protein D [Precursor] [Salinibacter ruber M8] gi|294343613|emb|CBH24391.1| Probable general secretion pathway protein D [Precursor] [Salinibacter ruber M8] Length = 473 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 19/206 (9%) Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 F S + F L+ +E+ RT+A P +T SG+ G Sbjct: 221 NLFESVDNILQAPDQISLSQFRRFLNLVEQDNVGRTVANPQVTVQSGEQGEIQIGQDVPI 280 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-----------GRIGLRIQTEVSEPVIGVN 344 +T + G T G+++ TPT+LS I L + E S + Sbjct: 281 QTTDFA-GNTVTEFFSTGIIIDVTPTLLSQPVADTSGAPVLDFIHLNVDVEDSNSQPSGS 339 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP----ILGALFRN 400 P +A T + L + GL+ + G+P+L +P L +F + Sbjct: 340 G---PIINRNQASTQILLLDNEATAIGGLISTQKTTRRSGVPILKDLPGWVFGLRYIFGS 396 Query: 401 SRFNREETEIFIAATPFLVKPVAMRD 426 N + E+ I +V P+ R Sbjct: 397 ETTNVTKQELLIVLRAEIVDPLRARA 422 >gi|83816469|ref|YP_445404.1| general (Type II) secretion pathway (GSP) D protein, putative [Salinibacter ruber DSM 13855] gi|83757863|gb|ABC45976.1| general (Type II) secretion pathway (GSP) D protein, putative [Salinibacter ruber DSM 13855] Length = 426 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 19/206 (9%) Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 F S + F L+ +E+ RT+A P +T SG+ G Sbjct: 174 NLFESVDNILQAPDQISLSQFRRFLNLVEQDNVGRTVANPQVTVQSGEQGEIQIGQDVPI 233 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-----------GRIGLRIQTEVSEPVIGVN 344 +T + G T G+++ TPT+LS I L + E S + Sbjct: 234 QTTDFA-GNTVTEFFSTGIIIDVTPTLLSQPVADTSGAPVLDFIHLNVDVEDSNSQPSGS 292 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP----ILGALFRN 400 P +A T + L + GL+ + G+P+L +P L +F + Sbjct: 293 G---PIINRNQASTQILLLDNEATAIGGLISTQKTTRRSGVPILKDLPGWVFGLRYIFGS 349 Query: 401 SRFNREETEIFIAATPFLVKPVAMRD 426 N + E+ I +V P+ R Sbjct: 350 ETTNVTKQELLIVLRAEIVDPLRARA 375 >gi|301165542|emb|CBW25113.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ] Length = 493 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 58/428 (13%), Positives = 135/428 (31%), Gaps = 76/428 (17%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVII-----LQVPVDVQDVLV---SDPTKADVV 80 + V+ +G + + IG+ + + VP D+ V+V P +V Sbjct: 98 TATDQSKVVQELKEFLGDVEGLEIGIKGNKVYVGGEIVVPSDIGRVIVVLGGYPDVVQLV 157 Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140 SP+T + + + + + D + V + Sbjct: 158 ELSPQTQRVIAR----------------------------NMQKEIQKSNMPD--VTVRV 187 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK------VMNLLNI---- 190 + +L G+V + D RA +++ ++ +N + + K + N +++ Sbjct: 188 ANGLFMLEGVVSSDVDKTRAEQIAAVYVPDMIQNLARRTEAVKAAEKDIIQNFISVNAKK 247 Query: 191 ---AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 + + E+ +D K GF+ G + + G S Sbjct: 248 KPAPIPKMIKISAQFVELTKDYNKIFGFKWEPVLGGGGGTINIGKGADGGVTSSSSGTLA 307 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + + L + + A R + + ++ + + + Sbjct: 308 GTI---SNLFPKLASAKSAGYARVIQSGVIITKDKIASKIVKRSEKPF--AIGTGEFVRT 362 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 G L TPT+L ++ L + VS N GD P T + + S + Sbjct: 363 EKATAGFDLSITPTILPQEKVDLSMGLTVS-----ANVGDPPETTSNTIQTALVVKSKES 417 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPI----------LGALFRNSRFNREETEIFIAATPF 417 V+ G++ + + P P L + ++ + +++ + TP Sbjct: 418 AVVGGVVVNKSSTDFDRNP-----PGGVDEVEDGSKLFSFVKSKAYLTNKSQFVVFVTPE 472 Query: 418 LVKPVAMR 425 +++ + Sbjct: 473 IIESASTG 480 Score = 44.3 bits (103), Expect = 0.040, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 6/164 (3%) Query: 46 KGKKISIGLNKVIILQVP-VDVQDVLVSDPTKAD-VVVHSPRTMYLFGKNVGQANVILIG 103 KK+ + L + ++ V V + T + V++ R + G GQ +V++ Sbjct: 25 PEKKVEVVLGIDHVEKLDFAPSTKVQVGNDTILNHVIIPQKREITFKGLKPGQTSVMVRN 84 Query: 104 HDGKQMLNLDI-LIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G + + D + + L+ F+ D + + + + V + G + D R + Sbjct: 85 TVGDIKAKFLVNITATDQSKVVQELKEFLGDVEGLEIGIKGNKVYVGGEIVVPSDIGRVI 144 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLN--IAGEDQVTLKVTIA 203 + + + + + + + + I + + V +A Sbjct: 145 VVLGGYPDVVQLVELSPQTQRVIARNMQKEIQKSNMPDVTVRVA 188 >gi|157163911|ref|YP_001467431.1| type II and III secretion system protein [Campylobacter concisus 13826] gi|112801005|gb|EAT98349.1| bacterial type II and III secretion system protein [Campylobacter concisus 13826] Length = 380 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 10/227 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +QVT K+TI E +K +G G + A + S S + Sbjct: 155 EQVTFKLTITETNLKDIKDLGTNLQ--GLLKPLNHGDLAYYINLITSPYITNSNVIKNND 212 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSV 307 +F +L+ L+ + ++ P LTA + F+S Y + S Sbjct: 213 SAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTDSY 272 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D G+ ++ P +LS I + + + + ++ P ++ ++ L G Sbjct: 273 EYKDIGLKINLKPIILSD-HIDFDLHLILEDILSQSSSFT-PIVSKKELKSSYSLKRGDV 330 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +VL+G+ K + + G+P+L I +L LF + + + + + Sbjct: 331 LVLSGINKKTNAKQRNGVPVLKDIWLLKYLFSVEQDSEINSVLTLTI 377 >gi|331646883|ref|ZP_08347982.1| outer membrane lipoprotein BfpB (Bundle-forming pilus B) [Escherichia coli M605] gi|331044200|gb|EGI16331.1| outer membrane lipoprotein BfpB (Bundle-forming pilus B) [Escherichia coli M605] Length = 563 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 89/256 (34%), Gaps = 21/256 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + +N E QVT+ V + V + S G + Sbjct: 304 ENYIKKINNELEQQVTINVAVYSVEVTDTSNLALSLSGVLKQRGHELGALSSSTFAVGGL 363 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + + E +L AL++A + + ++T +SGQ GG Y + + Sbjct: 364 PTLTAYFNGDGSENNEALLSALDKAGKVSIVTSASVTTMSGQPTPLQVGGNRTYVSQIGT 423 Query: 302 -------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--------- 345 + S ++ G ++ P VL G++ L+ +S N Sbjct: 424 IMSSVSTQSSVSTSSISTGFSMNILPRVLDNGQVMLQYGINISSLAGTHNGFDEVTAAGT 483 Query: 346 -GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ + R + L +G T+VLAG + + GI P L + Sbjct: 484 TIQLPNIQQRSFIQSSLLQNGNTLVLAGYEQQRNETSDSGI---GD-PSFKLLGGARAGS 539 Query: 405 REETEIFIAATPFLVK 420 +T I I TP +++ Sbjct: 540 HAKTLIVICITPRVLQ 555 >gi|270637582|ref|ZP_06222100.1| competence protein E [Haemophilus influenzae HK1212] gi|270317386|gb|EFA28906.1| competence protein E [Haemophilus influenzae HK1212] Length = 90 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%) Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + ++ +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ Sbjct: 3 FLKQEINTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKREL 62 Query: 411 FIAATPFLVKP 421 I TP ++K Sbjct: 63 VIFVTPHILKA 73 >gi|119510022|ref|ZP_01629163.1| general secretion pathway protein D [Nodularia spumigena CCY9414] gi|119465346|gb|EAW46242.1| general secretion pathway protein D [Nodularia spumigena CCY9414] Length = 826 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 67/188 (35%), Gaps = 16/188 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT------ 309 L A + + L +PTL GQ+A + + + T ++ Sbjct: 615 LLASLQAQIQNGNAKILTDPTLIVQEGQTADVRLTQEVVGNIIREITRGDGTSSESVTAD 674 Query: 310 -HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADT-T 359 + G+ L + + G + + R + T Sbjct: 675 KVNVGLTLAVKVDRIDDNGFVSLSVSPSVSSPQAPAEINLGGSGSQRIFLVSTRSLTSGT 734 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T++L+G++++ + +P+L +P++G+LFR + + E+ + TP ++ Sbjct: 735 IRLRDGQTLILSGIIQESDRTSVSKLPILGDLPLIGSLFRRTNRQNQRQEVIVLLTPQIM 794 Query: 420 KPVAMRDL 427 Sbjct: 795 DDSENSAY 802 >gi|241765871|ref|ZP_04763805.1| pilus (MSHA type) biogenesis protein MshL [Acidovorax delafieldii 2AN] gi|241364195|gb|EER59385.1| pilus (MSHA type) biogenesis protein MshL [Acidovorax delafieldii 2AN] Length = 599 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 43/283 (15%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----ADFG 235 + +K++ ++ QV ++ + +V+ + G + S + Sbjct: 317 AVEKMLAQVHKVLGKQVYVEAQLIDVQLSDNFEFGVDWTTLRSRLAAGFGSSPMQLGGST 376 Query: 236 GKFVSEGGDF------------------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + GG + ++ ++ V++AL ++ L+ P + Sbjct: 377 ATLPNAGGGYPGRAISIPAALIGSVAGPALGVSYQGSNYGIVINALRSFGNLKVLSNPNV 436 Query: 278 TAISGQSASFTS------------GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 +G A + S+++ + T GV++ P V Sbjct: 437 QVRNGTPALLSVGTSSRYVSQSASTQTVPGGGASTTSSSVQTDTVFSGVMVGVLPMVRDD 496 Query: 326 GRIGLRIQTEVSEPVI---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 GRI L + S+ G N +P + TT+ + G +V+ GL+ Sbjct: 497 GRIELLLNPMQSDVDPASLQLVAVGGDNLVSLPKVSYKGLTTTLNVGDGDVVVVGGLIDQ 556 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G P +S +P+LG LF N E+ I ++ Sbjct: 557 RTSNNDRGAPGVSDVPLLGKLFGNENKVHGSRELVIVLRARVL 599 >gi|157163960|ref|YP_001466804.1| type II and III secretion system protein [Campylobacter concisus 13826] gi|112801256|gb|EAT98600.1| bacterial type II and III secretion system protein [Campylobacter concisus 13826] Length = 380 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 88/227 (38%), Gaps = 10/227 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +QVT K+TI E +K +G G + A + S S D Sbjct: 155 EQVTFKLTITETNLKDIKDLGTNLQ--GLLKPLNHGDLAYYINLITSPYITNSNVIKNDD 212 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSV 307 +F +L+ L+ + ++ P LTA + F+S Y + S Sbjct: 213 SAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTDSY 272 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D G+ ++ P +LS I + + + + ++ P ++ ++ L G Sbjct: 273 EYKDIGLKINLKPIILSD-HIDFDLHLILEDILSQSSSLT-PIVSKKELKSSYSLKRGDV 330 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +VL+G+ K + + G+P+L I +L LF + + + + + Sbjct: 331 LVLSGINKKTTAKQRNGVPVLKDIWLLKYLFSVEQDSEINSVLTLTI 377 >gi|268316135|ref|YP_003289854.1| type II and III secretion system protein [Rhodothermus marinus DSM 4252] gi|262333669|gb|ACY47466.1| type II and III secretion system protein [Rhodothermus marinus DSM 4252] Length = 453 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 49/328 (14%), Positives = 94/328 (28%), Gaps = 42/328 (12%) Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 ++A E +E + A + + + + + + + V + IG Sbjct: 119 EKAPEKTEVVIGPRRATGEAGAVQAGAVLPATVDTRE-IQINAILFSVNLTKARDIGINW 177 Query: 218 SITGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVKGVLDRFSFE 257 + + + G F + Sbjct: 178 DQFFGLTTGTGTGTGGTTGGGTSGTGGQNNVEFYLKTEDLFDPLAPLIEAPNRISFRQLT 237 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 L LE T+A P +T SG+ G + G T G+++ Sbjct: 238 NFLRFLETEGIGETVASPQITVQSGEQGRIQIGSDVPIQ-TRDFAGNTITQFVSTGIIID 296 Query: 318 FTPTVLSP-----------GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 TPT+L + L + E S ADT V L G Sbjct: 297 VTPTLLVEPAADTAGAPLIEFVHLDVMVENSSATPSAAGL---IIDRNTADTQVLLLDGE 353 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPI----LGALFRNSRFNREETEIFIAATPFLVKPV 422 ++ GL ++GIP L +P L +F ++ ++E+ I ++ P+ Sbjct: 354 QTIIGGLYSTRESISRKGIPFLKDLPWWFFGLRYIFGRTQRTITQSELLIVLQVKVLDPL 413 Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 R + + + R+ + Sbjct: 414 TARASRPLERNLLERSRRE--LMERLER 439 >gi|170738260|ref|YP_001779520.1| type IVB pilus formation outer membrane protein [Burkholderia cenocepacia MC0-3] gi|169820448|gb|ACA95030.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia cenocepacia MC0-3] Length = 559 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 84/273 (30%), Gaps = 23/273 (8%) Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + S +V + QV + VT+ V G Sbjct: 285 VVSSPATGSITVTDTPDVLDRVGQFMEAQNRSLSKQVLIDVTVLSVDLSDDDSYGINWRA 344 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE--TVLHALERATAIRTLAEPTL 277 + G S S A F + + + + ++ AL R +R ++ Sbjct: 345 VYQALGTSFSLANTFSTTATNPVSFTAQVITPNSRASGTLAMISALSRQGKVRRKTSASI 404 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIG 329 T ++ Q Q Y S+T +V + G + P VL G + Sbjct: 405 TTLNDQPVPVQVATQQGYLASVSTTNTANVGSQTALTPGTVTTGFNMTLLPHVLDNGTVL 464 Query: 330 LRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 L+ T +S G P R V + SG T+VL+G + K Sbjct: 465 LQFYTNISALLELKTIESGGQKIQTPQIDTRNFLQRVSMKSGQTLVLSGYEASNDNLTKS 524 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 GI P A R+ EI I TP Sbjct: 525 GI----GTPNNYAFGGGYDGARDRQEIVILITP 553 >gi|78045321|ref|YP_361571.1| putative PilN-like type II and III secretion system protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78033825|emb|CAJ19824.1| putative PilN-like Bacterial type II and III secretion system protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 578 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 92/277 (33%), Gaps = 22/277 (7%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLL---NIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 ++ + + + ++ ++L N QVTL + + + ++G Sbjct: 298 IGRVALSPSTGAVTVTDTPDVLDRIGSMLERENTTLTKQVTLHAKVLSLTLNDANEVGVN 357 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + S F F + SV ++ AL + T+ P+ Sbjct: 358 WDVVYRSLSRQFEFTTPFQPASSAGTLGASVINTGKFAGTNVIVSALSTLGTVNTITSPS 417 Query: 277 LTAISGQSASFTSGG--------QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 L ++ + A Q + + G + G + P +L+ Sbjct: 418 LKTLNLRPAPIQIARQIGYIQSAQISQTEGAGTLGGLTPGFVTVGFNMTVVPRLLAQNEE 477 Query: 328 ------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 I + E+ G +MP R ++ V L +G T++L G +++ Sbjct: 478 MILQYSINISALNELRSEEAGGTKIEMPDIDTRNFNSEVRLHAGETLILHGFEQENHSSN 537 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + G+ P L ++R R+ T I I TP + Sbjct: 538 RRGM---GS-PFAWMLGGSARGQRQRTAIVILITPEV 570 >gi|254468950|ref|ZP_05082356.1| Bacterial type II and III secretion system protein [beta proteobacterium KB13] gi|207087760|gb|EDZ65043.1| Bacterial type II and III secretion system protein [beta proteobacterium KB13] Length = 719 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 38/298 (12%), Positives = 99/298 (33%), Gaps = 32/298 (10%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRD 208 + A+ + G + +++ + + Q ++ I EV D Sbjct: 410 ANDLQADSALGCVDFVADDFGIVASGSILDIQLVEKFLVDQDQPVKQAMIETFILEVNSD 469 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGG------------KFVSEGGDFSVKGVLDRFSF 256 ++ + + S+ S++ G +EGG + + R Sbjct: 470 WKNELESRFTSNTMSTNSSEAAGDGGSGLYSFTAGLLDFASATAEGGITASTRLGSRNQI 529 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTT 309 +++ +E + + ++ P + G+ + +++T + + Sbjct: 530 SALVNMIETNSLGKKISNPVILVRDGEEGVVDKTRTFRAQRSTTTTNSATTNTSNNQIDE 589 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 +D + L TP + + V E + + T +++ G ++ Sbjct: 590 YDAPLKLTVTPNINKHNDVIDLDFNFVEETYDSASPTA--ASTSNNITTKLKIEPGEVVM 647 Query: 370 LAGLLKDDIQQLKEGIPLLSKI-------PILGALFRNSRFNREE-TEIFIAATPFLV 419 +AGL + +G+P +SK+ P++ L + TE+ + P ++ Sbjct: 648 MAGLFQQTQNNTTQGLPFVSKLGFSKLLSPLVALLGGGEVRRTDTGTELLVFINPTVI 705 >gi|218711163|ref|YP_002418783.1| putative type IV pilus outer membrane secretin lipoprotein [Escherichia coli ED1a] gi|218349946|emb|CAQ87357.1| putative type IV pilus outer membrane secretin lipoprotein [Escherichia coli ED1a] Length = 539 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 19/242 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L V I +R+ +Q G + S S + F G Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTGAASDAITGGVSIVDGK 361 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 + L AL + + + + + Q Y ++ +V Sbjct: 362 LTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421 Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 T G + P +L + + L + + G + +P+ ++ + Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TV+L SG T++++G + + K+G+ P L ++T + + TP Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537 Query: 418 LV 419 ++ Sbjct: 538 II 539 >gi|330951304|gb|EGH51564.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae Cit 7] Length = 106 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 44/96 (45%) Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 RI + ++ EP +P + + + V + G TIV+ G+ + ++ Sbjct: 1 TPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVV 60 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + +P L +P LG LFR + ++E+ + TP + Sbjct: 61 DKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 96 >gi|320106632|ref|YP_004182222.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] gi|319925153|gb|ADV82228.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] Length = 819 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 75/190 (39%), Gaps = 16/190 (8%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + + + L + R L P L + GQ A G + T S ++ Sbjct: 410 NGTNFAVSIGSAALAATL----SDSDTRVLQNPRLRSTDGQRAQLKIGQRIPVATGSYNS 465 Query: 303 G----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350 G T D GV + TPTV I L+++ EVS ++ P Sbjct: 466 GVSTGVASVGVQTQFQYIDIGVQIDLTPTVHQNHEISLKMKIEVSTHANDETISGVVEPV 525 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R ++ ++L G +L+G+L G P LS+IP+LG +F N +R TEI Sbjct: 526 IGQRISEQVIQLKEGEPSILSGILTKTESDSLGGTPGLSQIPLLGRIFSNKTRDRASTEI 585 Query: 411 FIAATPFLVK 420 P +V+ Sbjct: 586 VFVLVPHIVR 595 >gi|73853185|ref|YP_308681.1| pillus assembly protein [Escherichia coli] gi|33414103|gb|AAL18829.2| Pillus assembly protein [Escherichia coli] Length = 539 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 19/242 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L V I +R+ +Q G + S S + F Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDAITGGVSIVDGK 361 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 + L AL + + + + + Q Y ++ +V Sbjct: 362 LTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421 Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 T G + P +L + + L + + G + +P+ ++ + Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TV+L SG T++++G + + K+G+ P L ++T + + TP Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537 Query: 418 LV 419 ++ Sbjct: 538 II 539 >gi|331680850|ref|ZP_08381490.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli H299] gi|331081838|gb|EGI52996.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli H299] Length = 539 Score = 107 bits (267), Expect = 5e-21, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 19/242 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L V I +R+ +Q G + S S + F Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDAITGGVSIVDGK 361 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 + L AL + + + + + Q Y ++ +V Sbjct: 362 LTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421 Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 T G + P +L + + L + + G + +P+ ++ + Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TV+L SG T++++G + + K+G+ P L ++T + + TP Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537 Query: 418 LV 419 ++ Sbjct: 538 II 539 >gi|124024476|ref|YP_001018783.1| general (type II) secretion pathway protein D precursor [Prochlorococcus marinus str. MIT 9303] gi|123964762|gb|ABM79518.1| possible general (type II) secretion pathway protein D precursor [Prochlorococcus marinus str. MIT 9303] Length = 849 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 92/268 (34%), Gaps = 29/268 (10%) Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFET 258 + Q S G + + + + + G ++ + +F Sbjct: 578 LDATSSSDSQNQTSTSNNGQNQTSASNNSQNQTSTSTQNRGTYNRRRNPGLGYPNQAFYD 637 Query: 259 VLHALERATAIRTLAEPTLT------AISGQ-------SASFTSGGQHLYKTVSSSTGAT 305 L A +T + LA PTL I+G+ A G + + ++ Sbjct: 638 FLRAQIESTNTKVLASPTLILSESNETIAGEIGRKNANEAYVRLGDKVVTAFEITTDQNG 697 Query: 306 SV----TTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKAD 357 +V T G+ L + G + ++ +S V + G+ R + Sbjct: 698 NVYCEPTFETAGLSLGAKVSKIDDNGFVTFSLEPNLSAKVGEQDQGECGLISTVNERLLE 757 Query: 358 T-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V + G T++L G++ D Q+ P+L IP++G FR++ + ++E+ I TP Sbjct: 758 TGAVRVRDGQTLILTGVISDRDIQVVTKWPILGDIPVIGQFFRSTNGTKSKSELVIMVTP 817 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 ++ Y A Sbjct: 818 RIIDDEQGGTYGY---GYRPSTRAARNL 842 >gi|254430712|ref|ZP_05044415.1| general secretion pathway protein D [Cyanobium sp. PCC 7001] gi|197625165|gb|EDY37724.1| general secretion pathway protein D [Cyanobium sp. PCC 7001] Length = 849 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 82/288 (28%), Gaps = 52/288 (18%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V R + + +G G+ S S F + + +F + A Sbjct: 566 VERTVQRILGRN----GTVSRTRSSNNGGFSNRLDVASTPGNPGNNYAEDTFYDFVRAQI 621 Query: 265 RATAIRTLAEPTLTAISG--------------------------------------QSAS 286 + + + LA PTL + + Sbjct: 622 TSGSTKLLASPTLILQENAAELRGAGITGSTDSPGGLDEYSPDSPIGRRRANEGVVRVGT 681 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN- 344 + G+VL + G + + VS Sbjct: 682 NVVTNYQVTTPEGGGNIVCDPEVSTAGLVLGARIEKIDDNGFVTFALSPSVSAITGQEQA 741 Query: 345 ----AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ VR+ DT V + G T++L G++ D + + P+L IP++G FR Sbjct: 742 PEGCGSNLNILSVRRLDTGAVRVRDGQTLILTGVISDFDRSVVSKWPILGDIPLIGQFFR 801 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 ++ +E+ E+ I TP ++ Y F Sbjct: 802 STSNQKEKRELVIMVTPRIINDEQGGAFGY---GYQPGTRQVRDFLGT 846 >gi|319774909|ref|YP_004134178.1| hypothetical protein Theam_1790 [Thermovibrio ammonificans HB-1] gi|317115257|gb|ADU97746.1| hypothetical protein Theam_1790 [Thermovibrio ammonificans HB-1] Length = 570 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 83/259 (32%), Gaps = 20/259 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + +KV+N L A QV +V I EV Q G S S + Sbjct: 313 TDTPENIAKVEKVINSLIKAVSQQVQFRVAIYEVTYSDEFQSGVDWSAVFGSQNLQITTG 372 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G F G F ++ L R ++T+ + + +SG++ + G Sbjct: 373 QSTGYVFDLSG----YFKAGKSNPFNYLVKLLSRYGKVKTIYDNYVRTLSGETVAIVPGE 428 Query: 292 QHLYKTVSSSTGATSVTTHD---------YGVVLHFTPTVLSPGR------IGLRIQTEV 336 + + + G+ L+ TP G + R + Sbjct: 429 TYRFLESIETQSQADTKLVTQVPVFKELSLGIQLYITPLKRDDGTTQYELDVTNRFIKSL 488 Query: 337 SEPVIGVNAGDMPSYRVRK-ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 N +P R T +P V+ G+ + + + G+P L IP+ G Sbjct: 489 KTYTFDNNTYTVPELIGRTDISLTTVIPKHHFEVITGIKQYKLDSSQSGVPGLMDIPVAG 548 Query: 396 ALFRNSRFNREETEIFIAA 414 LF+ +E +A Sbjct: 549 ELFKGRSRKATLSEYIVAI 567 >gi|170077129|ref|YP_001733767.1| general secretion pathway protein D [Synechococcus sp. PCC 7002] gi|169884798|gb|ACA98511.1| general secretion pathway protein D [Synechococcus sp. PCC 7002] Length = 788 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 79/220 (35%), Gaps = 24/220 (10%) Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA-LERATAIRTLAEPTLTAISGQ 283 G + EG V +F L A L R T + +A+PTL + Sbjct: 540 GVGPNNTPILDLVPFEEGIGTIVPSTTSGTNFIGSLVAGLLRNTTSKIVADPTLIIQENE 599 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP----------------TVLSPGR 327 + Q + S S + + ++ P + G Sbjct: 600 TGELRVTEQIINSVQIVSGSVNSDSDNGTNNAVNVLPEPVLAEVGLFVPITVENIDDNGF 659 Query: 328 IGLRIQTEVSEPVIGV-----NAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDDIQQ 380 I L I EVS P V + ++ + + + +V L T++LAG + + Sbjct: 660 ITLNITPEVSAPSEEVVFEAGTSRNVLTLKRQSILNSGSVRLRDDQTLILAGAIDERDIT 719 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P+L IPILG+LFR+S E E+ TP ++ Sbjct: 720 TTSKVPILGDIPILGSLFRSSSRTNERRELLFIITPQVID 759 >gi|304412101|ref|ZP_07393711.1| type II and III secretion system protein [Shewanella baltica OS183] gi|307305996|ref|ZP_07585742.1| type II and III secretion system protein [Shewanella baltica BA175] gi|304349651|gb|EFM14059.1| type II and III secretion system protein [Shewanella baltica OS183] gi|306911489|gb|EFN41915.1| type II and III secretion system protein [Shewanella baltica BA175] Length = 487 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 52/286 (18%), Positives = 101/286 (35%), Gaps = 10/286 (3%) Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---N 186 + + + + + + +RA +L + + +S +V+ N Sbjct: 192 IFPGAQSLISSAIEKIGQFENISDGEMVKRAYKLKLNQNDKQQLEEDEFTSKVQVLPGSN 251 Query: 187 LLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-D 244 L + G +++ L IA + +Q+ F + S +++ + S G D Sbjct: 252 ALLVRGTPEEIQLAKRIATLIDVKRQQLLFFLRVYDVSVERTEALGVNSSWLNGSRGLYD 311 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 V D F AL R + E L + Q F V S Sbjct: 312 IIVPPFTDTVDFFKNFQALYTNNMARGVYETNLLVLENQQGHFGKKET--ATVVLISDKQ 369 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVE 361 S + L+ T +L G++ + +S+ A P + + V Sbjct: 370 VSTQKIEAENSLYVTGRLLPSGKVQAKFSYIEESLSDDKAEGGATQAPRVNSQSLTSEVY 429 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + G T++L G ++ G+P+LS IP LG LF++ + + + Sbjct: 430 IEPGQTVILGGFDNTVTDSVESGVPILSSIPWLGELFKSKKETKRK 475 >gi|330950830|gb|EGH51090.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae Cit 7] Length = 314 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 6/153 (3%) Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---R 327 + P++ + Q A S ++ G L TP L + Sbjct: 1 MIGNPSILTLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQ 58 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L + E + I PS R T + G++V+ G + +PL Sbjct: 59 VQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPL 118 Query: 388 LSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419 L IP +G LF++ + E TP L+ Sbjct: 119 LGDIPYIGKLLFQSRSRELSQRERLFILTPRLI 151 >gi|229515151|ref|ZP_04404611.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21] gi|71480608|gb|AAZ32230.1| VcsC2 [Vibrio cholerae non-O1/non-O139] gi|229347856|gb|EEO12815.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21] Length = 485 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 54/341 (15%), Positives = 112/341 (32%), Gaps = 47/341 (13%) Query: 69 VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 + V D A D V+ P L + N+ + + L + + Sbjct: 177 ISVMDRNIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L + ++ S+ +++ G ++ + A ++ Sbjct: 235 LEEDEKSTKVQALPGSNALLVRGT---QEEVKLAKRIAA--------------------- 270 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 L+++ Q+ + + ++ + + +G S G F Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDIVVPPFT----------- 318 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + F AL R++ E L A+ Q F + S Sbjct: 319 -----ETTDFLKNFQALYTNGIARSVYETNLLALENQQGQFGKKQTATLTLI--SDKEVK 371 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + L+ T +L G++ RIQ ++ P + ++ V + G Sbjct: 372 TEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDEEGDSNRPPRVSSQSLNSEVYIQPGQ 431 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 T++L G QQ + G+P+LS IP+LG LF+ + ++ + Sbjct: 432 TVILGGFDNTVTQQQESGVPVLSSIPLLGELFKYTSESKHK 472 >gi|237750361|ref|ZP_04580841.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229373891|gb|EEO24282.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 756 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 85/244 (34%), Gaps = 20/244 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L QV + V I + +G S P++S Sbjct: 508 SQFLQDLEQKMNMQVAIDVEILSLIHFQTNNVGIDWQQIFSILNPTQSSL-----NIAFG 562 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA----------SFTSGG 291 GG + + +++ + L +R+L+ P + A++ Q A + Sbjct: 563 GGGAMLTLGNNNADLQSIFNLLRTYGDLRSLSNPKIMALNNQPALISVGSVLRYTQNLVY 622 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI-GLRIQTEVSEPVIGVNAGDM-- 348 Q + +T + G++L TP++ I + ++ NA + Sbjct: 623 QSNNTNTTIQNTSTQYPSVFAGILLDITPSISHDSVILRINPSITKTKDPDMENAAEALK 682 Query: 349 --PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P+ + + V+L G +++ GLL + +Q + IP + + L +F Sbjct: 683 APPNLSTNQLSSIVKLKDGERVIIGGLLNNVVQNTSQAIPKIGENKWLKNIFGKQSRTNR 742 Query: 407 ETEI 410 E+ Sbjct: 743 SEEL 746 >gi|253990257|ref|YP_003041613.1| piln (lipoprotein) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781707|emb|CAQ84870.1| piln (lipoprotein) [Photorhabdus asymbiotica] Length = 533 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 20/241 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L V I + D Q G S+ S+ + + Sbjct: 298 QVVLNVKILNLMFDRADQYGVDWSLAYKSAHIGVGGEGSSAVDGSGISTNIHIL-KGPFS 356 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------- 307 ++ AL + + +P++T ++ Q+ Q Y S+T V Sbjct: 357 DSTLLIKALSAQGKVSIVTQPSVTTLNLQAVPMQVATQTGYVASISNTSTPQVGTSVGIE 416 Query: 308 -TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGDMPSYRVRKADTT 359 T G + P ++ +I L+ +S+ +P+ +R Sbjct: 417 PATVTTGFNMLMLPYAMADKQILLQYNISLSDLKRLEKFGKEETGQVQLPTVDLRAFSQK 476 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V L SG T+VL+G + + G L P L + R I + TP +V Sbjct: 477 VRLHSGETLVLSGFEQQSDASDRSG---LGS-PDNQFLGGSREGKRNHNVIVVMITPIVV 532 Query: 420 K 420 Sbjct: 533 D 533 >gi|1314252|gb|AAC44041.1| BfpB [Escherichia coli] Length = 552 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 89/266 (33%), Gaps = 22/266 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + +N LN E QVT+ V I V + + +G + Sbjct: 285 TSSANMKKINEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEAFVNDNGGVLGSVS 344 Query: 233 DFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 S F S + +L+ L + + ++T +SGQ G Sbjct: 345 TSNFAATSGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGN 404 Query: 292 QHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 Y + ++ S +T G +++ P V G I L+ +SE V N Sbjct: 405 DRTYVSEIGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNN 464 Query: 345 A----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +P+ + L +G T+VLAG K + + +G+ + +L Sbjct: 465 GFDQATVNGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGV-GTTSFKLL 523 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G + T I TP ++ Sbjct: 524 GGAL---NGSASRTVTVICITPRIID 546 >gi|88809802|ref|ZP_01125308.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 7805] gi|88786186|gb|EAR17347.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 7805] Length = 765 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 73/207 (35%), Gaps = 32/207 (15%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F L A ++++ + LA PTL G S S + + ++ Sbjct: 541 ANQFFDFLRAQIQSSSTKVLASPTLIIQEGDDESLGSDDRSISSDGKVGRSRSNEALVSV 600 Query: 313 GVVLHF----------------------------TPTVLSPGRIGLRIQTEVSEPV---I 341 G L + G + + EVS + Sbjct: 601 GTRLVTSYRVRQDDNANIFCEPVFKNAGLTFGARVDRIDDNGFVTFSLSPEVSAETGIRV 660 Query: 342 GVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 N G++ R+ DT + + G T+VL G+++D Q P+L IP +G FR+ Sbjct: 661 IENCGNISLINSRELDTGKIRVRDGQTLVLTGVIQDSDVQAVTKWPILGDIPFIGQFFRS 720 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDL 427 S +R + E+ I TP ++ + Sbjct: 721 SGGSRTKRELVILVTPRIIDDTQGGNY 747 >gi|218509314|ref|ZP_03507192.1| pilus assembly secretion protein [Rhizobium etli Brasil 5] Length = 177 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 53/130 (40%), Positives = 82/130 (63%), Gaps = 4/130 (3%) Query: 12 MSIFLFSSNPS-VAKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I + P+ L + EA+A +I I+ +++ +GLNK +++ +P D Sbjct: 18 LAISVTGMAPASFGPLLAVDEAHADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE L Sbjct: 78 DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137 Query: 128 RRFIADSNIR 137 RRFI DSN + Sbjct: 138 RRFIPDSNYQ 147 >gi|253771851|ref|YP_003034682.1| type II and III secretion system protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|242378852|emb|CAQ33644.1| gspD [Escherichia coli BL21(DE3)] gi|253322895|gb|ACT27497.1| type II and III secretion system protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253979310|gb|ACT44980.1| general secretory pathway component, cryptic [Escherichia coli BL21(DE3)] Length = 338 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 39/72 (54%) Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P++ R V + +G T+VL GLL D ++ +PLL IP++G LFR + R + Sbjct: 212 PTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKR 271 Query: 409 EIFIAATPFLVK 420 + + P +++ Sbjct: 272 NLMVFIRPTIIR 283 >gi|153951393|ref|YP_001397557.1| type II and III secretion system protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938839|gb|ABS43580.1| bacterial type II and III secretion system protein [Campylobacter jejuni subsp. doylei 269.97] Length = 391 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 84/223 (37%), Gaps = 11/223 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ K+TI E D LK+ G + S + + V D+ Sbjct: 167 PQLKFKITILETNLDFLKEKGSKLSSLFQGNPIKDFHLFVNLITIPYNSQNNIVSS--DK 224 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----- 308 F + L+ LE R ++ P L A S F+S + S+S T V+ Sbjct: 225 KGFYSTLNFLENQRITRIVSNPFLLARSNTEVFFSSVQNIPFLKNSTSVSDTRVSQNTSY 284 Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D G+ + P ++ ++ + V + + N+ P ++ ++ L G Sbjct: 285 DYRDVGLQVTLKPVIIGD-KVDFSLHLIVEDLLS--NSNLTPVTSKKELKSSYTLKKGEL 341 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +VL+G+ K GIP L I LG LF+ R + + Sbjct: 342 LVLSGINKVTNTNYTSGIPYLKDIWFLGNLFKIQRKETNNSVL 384 >gi|194437943|ref|ZP_03070037.1| outer membrane lipoprotein BfpB [Escherichia coli 101-1] gi|194423164|gb|EDX39157.1| outer membrane lipoprotein BfpB [Escherichia coli 101-1] Length = 545 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 21/270 (7%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + + LN E QVT+ V + V + + + +G Sbjct: 280 TSAQNMKRVSEYIQKLNKQLERQVTIDVAVYSVSTSDVSNLSMSLQALLTRNGGVLGSIT 339 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + + +L+ L + + + +T +SGQ G Sbjct: 340 SNFPAASGTPTITGFLNGNGNSNNQVLLNLLATSGKVSVVTSAAVTTMSGQPVPLKVGND 399 Query: 293 HLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Y + + T + S ++ G +++ P+V G I L+ +S V + Sbjct: 400 RTYVSQIGTVMGQTSTTSSASTSSVTTGFLMNLLPSVGEDGNILLQYGITISSLVGSNDG 459 Query: 346 ----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 +P+ + L +G T++LAG + + G L K P Sbjct: 460 FDQATVNGTIIQLPNVDSTTFVQSSLLKNGNTLILAGYEQKRNEISDSG---LGK-PGFK 515 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425 L + I+ TP ++ A + Sbjct: 516 LLGGSRNGKDSREIKIISITPRIIDVKAGQ 545 >gi|191166277|ref|ZP_03028110.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli B7A] gi|317054603|ref|YP_004119670.1| PilN [Escherichia coli] gi|51038809|gb|AAT94189.1| PilN [Escherichia coli] gi|190903704|gb|EDV63420.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli B7A] gi|284433134|gb|ADB84873.1| PilN [Escherichia coli] gi|323974480|gb|EGB69607.1| R64 PilN family protein type IVB pilus formation outer membrane protein [Escherichia coli TW10509] Length = 539 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L V I +R+ +Q G + S S + F Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 361 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 + L AL + + + + Q Y ++ +V Sbjct: 362 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421 Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 T G + P +L + + L + + G + +P+ ++ + Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TV+L SG T++++G + + K+G+ P L ++T + + TP Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537 Query: 418 LV 419 ++ Sbjct: 538 II 539 >gi|305667882|ref|YP_003864356.1| type IV pilus formation outer membrane protein [Escherichia coli] gi|304655631|emb|CBM42300.1| type IV pilus formation outer membrane protein [Escherichia coli] gi|333011616|gb|EGK31029.1| type IVB pilus formation outer membrane protein, R64 PilN family [Shigella flexneri K-227] gi|333011730|gb|EGK31139.1| type IVB pilus formation outer membrane protein, R64 PilN family [Shigella flexneri K-227] Length = 539 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L V I +R+ +Q G + S S + F Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 361 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 + L AL + + + + Q Y ++ +V Sbjct: 362 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421 Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 T G + P +L + + L + + G + +P+ ++ + Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TV+L SG T++++G + + K+G+ P L ++T + + TP Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537 Query: 418 LV 419 ++ Sbjct: 538 II 539 >gi|170765827|ref|ZP_02900638.1| outer membrane lipoprotein BfpB [Escherichia albertii TW07627] gi|170124973|gb|EDS93904.1| outer membrane lipoprotein BfpB [Escherichia albertii TW07627] Length = 545 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 21/270 (7%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + + LN E QVT+ V + V + + + +G Sbjct: 280 TSAQNMKRVSEYIQKLNKQLERQVTIDVAVYSVSTSDVSNLSMSLQALLTRNGGVLGSIT 339 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + + +L+ L + + + +T +SGQ G Sbjct: 340 SNFPAASGTPTITGFLNGNGNSNNQVLLNLLATSGKVSVVTSAAVTTMSGQPVPLKVGND 399 Query: 293 HLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Y + + T + S ++ G +++ P+V G I L+ +S V + Sbjct: 400 RTYVSQIGTVMGQTSTTSSASTSSVTTGFLMNLLPSVGEDGNILLQYGITISSLVGSNDG 459 Query: 346 ----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 +P+ + L +G T++LAG + + G L K P Sbjct: 460 FDQATVNGTIIQLPNVDSTTFVQSSLLKNGNTLILAGYEQKRNEVSDSG---LGK-PGFK 515 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425 L + I+ TP ++ A + Sbjct: 516 LLGGSRNGKDSREIKIISITPRIIDVKAGQ 545 >gi|168770541|ref|ZP_02795548.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4486] gi|226201055|ref|YP_002756667.1| type IVB pilus formation outer membrane protein [Escherichia coli] gi|309783663|ref|ZP_07678313.1| type IVB pilus formation outer membrane protein, R64 PilN family [Shigella dysenteriae 1617] gi|189360515|gb|EDU78934.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4486] gi|219881684|gb|ACL52054.1| type IVB pilus formation outer membrane protein [Escherichia coli] gi|308928559|gb|EFP74016.1| type IVB pilus formation outer membrane protein, R64 PilN family [Shigella dysenteriae 1617] gi|324010812|gb|EGB80031.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 60-1] Length = 539 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L V I +R+ +Q G + S S + F Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 361 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 + L AL + + + + Q Y ++ +V Sbjct: 362 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421 Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 T G + P +L + + L + + G + +P+ ++ + Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TV+L SG T++++G + + K+G+ P L ++T + + TP Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537 Query: 418 LV 419 ++ Sbjct: 538 II 539 >gi|300993702|ref|ZP_07180511.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 200-1] gi|300305068|gb|EFJ59588.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 200-1] Length = 539 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L V I +R+ +Q G + S S + F Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 361 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 + L AL + + + + Q Y ++ +V Sbjct: 362 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421 Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 T G + P +L + + L + + G + +P+ ++ + Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TV+L SG T++++G + + K+G+ P L ++T + + TP Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537 Query: 418 LV 419 ++ Sbjct: 538 II 539 >gi|10955355|ref|NP_053067.1| BfpB [Escherichia coli] gi|190014869|ref|YP_001965381.1| Lipoprotein [Escherichia coli] gi|194429634|ref|ZP_03062153.1| outer membrane lipoprotein BfpB [Escherichia coli B171] gi|215276196|ref|YP_002332159.1| lipoprotein [Escherichia coli O127:H6 str. E2348/69] gi|22653674|sp|Q9S142|BFPB_ECO11 RecName: Full=Outer membrane lipoprotein BfpB; AltName: Full=Bundle-forming pilus B; Flags: Precursor gi|229462858|sp|Q47068|BFPB_ECO27 RecName: Full=Outer membrane lipoprotein BfpB; AltName: Full=Bundle-forming pilus B; Flags: Precursor gi|6009381|dbj|BAA84840.1| BfpB [Escherichia coli] gi|109389590|gb|ABG29509.1| Lipoprotein [Escherichia coli] gi|194412358|gb|EDX28661.1| outer membrane lipoprotein BfpB [Escherichia coli B171] gi|215267792|emb|CAS07441.1| lipoprotein [Escherichia coli O127:H6 str. E2348/69] gi|323159042|gb|EFZ45043.1| outer membrane lipoprotein bfpB [Escherichia coli E128010] Length = 552 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 22/266 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + +N LN E QVT+ V I V + +G + Sbjct: 285 TSSANMKKINEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGVLGSVS 344 Query: 233 DFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 S F S + +L+ L + + ++T +SGQ G Sbjct: 345 TSNFAATSGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGN 404 Query: 292 QHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 Y + ++ S +T G +++ P V G I L+ +SE V N Sbjct: 405 DRTYVSEIGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNN 464 Query: 345 A----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +P+ + L +G T+VLAG K + + +G+ + +L Sbjct: 465 GFDQATVNGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGV-GTTSFKLL 523 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G + T I TP ++ Sbjct: 524 GGAL---NGSASRTVTVICITPRIID 546 >gi|323191604|gb|EFZ76862.1| outer membrane lipoprotein bfpB [Escherichia coli RN587/1] Length = 552 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 22/266 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + +N LN E QVT+ V I V + +G + Sbjct: 285 TSSANMKKINEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGVLGSVS 344 Query: 233 DFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 S F S + +L+ L + + ++T +SGQ G Sbjct: 345 TSNFAATSGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGN 404 Query: 292 QHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 Y + ++ S +T G +++ P V G I L+ +SE V N Sbjct: 405 DRTYVSEIGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNN 464 Query: 345 A----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +P+ + L +G T+VLAG K + + +G+ + +L Sbjct: 465 GFDQATVNGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGV-GTTSFKLL 523 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G + T I TP ++ Sbjct: 524 GGAL---NGSASRTVTVICITPRIID 546 >gi|325282922|ref|YP_004255463.1| type II and III secretion system protein [Deinococcus proteolyticus MRP] gi|324314731|gb|ADY25846.1| type II and III secretion system protein [Deinococcus proteolyticus MRP] Length = 655 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 115/312 (36%), Gaps = 39/312 (12%) Query: 139 EMVSDTVVLHGMVRTIQDSQR-AVELSETFLSQSGRNQYANSSSKKVMNLLNI-----AG 192 + G + D+ R A + + + + +V + + Sbjct: 351 SSAGTNSTVSGTNTALGDATRLASQEATIIADPRTNSLIVRGTPTQVAQIAELIPTLDRK 410 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q+ L+V I E+ + K +G +T + F+ + Sbjct: 411 VPQINLQVRIQEINEEATKTLGVNWRVTAGGFNVGILPSG--------LTASFNPLQTVT 462 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQ---------------SASFTSGGQHLYKT 297 F+ L+ALE + + + T++ SGQ +A+ G L Sbjct: 463 GFNIFPALNALESQRVAKRVYDGTVSMQSGQGSLNAGTGSQDASSTAAASIRSGGRLELN 522 Query: 298 VSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVI---------GVNAGD 347 + + G+ T YGVVL F P+V G I LR++ +++E A Sbjct: 523 IIGAEGSNIEKTIPYGVVLDFFEPSVAPDGTITLRVRGQINELRNREALNAALASGGAPS 582 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + A T + SG T++LAGL+ ++ K G+P LS+IP LGAL Sbjct: 583 LLDFLNSDAQTKISFKSGETVLLAGLMAENNSTTKSGLPFLSQIPGLGALAGEQSTTNNG 642 Query: 408 TEIFIAATPFLV 419 T++ T ++ Sbjct: 643 TQMLFVITGDII 654 >gi|119489367|ref|ZP_01622147.1| general secretion pathway protein D [Lyngbya sp. PCC 8106] gi|119454640|gb|EAW35786.1| general secretion pathway protein D [Lyngbya sp. PCC 8106] Length = 800 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 15/185 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-------T 308 F L + + L +PTL G+ A + + + + V Sbjct: 596 FLQTLQFEIQNRNAKILTDPTLLVQEGEIARVELVENIVKRFNTDTIDNNGVQRTERQPE 655 Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------YRVRKADT-TV 360 D G+ + V G + + + V+ +N G + R+ + + Sbjct: 656 FEDVGLEVSINVERVDDNGFVTINVNPVVTAITNRINIGGVTGEDFVTETSRREYQSGRI 715 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G T++++G++++ + IP L +PILGALFR+S E+ + TP ++ Sbjct: 716 RLRDGQTLIVSGIIQEQDRVTASKIPFLGDLPILGALFRSSTRETGRAEVVVLVTPMIMD 775 Query: 421 PVAMR 425 Sbjct: 776 ESDRA 780 >gi|153212013|ref|ZP_01947830.1| VcsC2 [Vibrio cholerae 1587] gi|124116809|gb|EAY35629.1| VcsC2 [Vibrio cholerae 1587] Length = 461 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 57/288 (19%), Positives = 100/288 (34%), Gaps = 10/288 (3%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184 + + + + + + RA ++ + + N + Sbjct: 163 QATFPGAQSLIASAITNIGQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 222 Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 N L + G D+V L IA + +Q+ F + S+ + F D S G Sbjct: 223 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGI 282 Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D V + F AL R + E L + Q F S Sbjct: 283 YDLVVPPFTETTDFLRNFQALTSNGIARGVYETNLLVLENQQGHFGKKQT--ATIALISN 340 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTT 359 + L+ T +L G + RI + + + N+ P + ++ Sbjct: 341 RQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSLNSE 400 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 V + G TI+L G QQ+K GIP+LS IP+LG LF+++ + + Sbjct: 401 VYIKPGQTIILGGFDNTVTQQMKSGIPVLSSIPLLGELFKSTSEVKSK 448 >gi|284009077|emb|CBA76056.1| general secretion pathway protein D [Arsenophonus nasoniae] Length = 221 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 5/194 (2%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ + E F S+ G S GG F G+ Sbjct: 33 RTQVLIESIMFETTDGSNFNFSFGVGKKSGSTVVGGVNTTTLGDILSSSGGSF---GIFS 89 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 L A++ + L+ P + +SGQ+ G+ + + V ++ D Sbjct: 90 GNVLGLALTAVQGDKHSKLLSVPRILTLSGQNVPI-VTGKIIGQGVDVKNPFQTIERRDV 148 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G+ L TP VL+ + L ++++ NA D+ + R DTTV+L +G T+++ G Sbjct: 149 GISLDVTPVVLNGDSVMLTVKSKADSVSNISNATDI-VFNQRSIDTTVQLKNGDTLLIGG 207 Query: 373 LLKDDIQQLKEGIP 386 L++ + +P Sbjct: 208 LIQHNAVNSTSSVP 221 >gi|1122402|emb|CAA92328.1| BfpB [Escherichia coli] Length = 553 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 22/266 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + + +N LN E QVT+ V I V + +G + Sbjct: 286 TSSANMKKINEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGVLGSVS 345 Query: 233 DFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 S F S + +L+ L + + ++T +SGQ G Sbjct: 346 TSNFAATSGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGN 405 Query: 292 QHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 Y + ++ S +T G +++ P V G I L+ +SE V N Sbjct: 406 DRTYVSEIGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNN 465 Query: 345 A----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +P+ + L +G T+VLAG K + + +G+ + +L Sbjct: 466 GFDQATVNGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGV-GTTSFKLL 524 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G + T I TP ++ Sbjct: 525 GGAL---NGSASRTVTVICITPRIID 547 >gi|87123518|ref|ZP_01079369.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. RS9917] gi|86169238|gb|EAQ70494.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. RS9917] Length = 771 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 71/207 (34%), Gaps = 32/207 (15%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISG-----------------------QSASFTS 289 F L A +++ + LA PTL G A Sbjct: 547 TNQFFDFLRAKIESSSTKVLASPTLVLQEGGEKSMGTDKGKISEDGKIGREYSNEAYVRV 606 Query: 290 GGQHLYKTVSSS--TGATSVTTHDYGVVLHF---TPTVLSPGRIGLRIQTEVSEPVIGVN 344 G Q + G L F + G I + E+S PV Sbjct: 607 GTQFVTSYEVKQDINGNNFCQPVFANAGLTFGARVDKIDDNGFITFALSPEISAPVGSEQ 666 Query: 345 AGD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G+ + R DT + + G T++L G++ D +++ P+L +P +G FR+ Sbjct: 667 VGNCGAITIINDRSLDTGKIRVRDGQTLILTGVINDTDREVVSKWPILGDLPFVGQFFRS 726 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDL 427 S R ++E+ I TP ++ + Sbjct: 727 SGGQRSKSELVILVTPRIIDDRSGGSY 753 >gi|153829308|ref|ZP_01981975.1| msha biogenesis protein mshl [Vibrio cholerae 623-39] gi|148875208|gb|EDL73343.1| msha biogenesis protein mshl [Vibrio cholerae 623-39] Length = 137 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMP--SYRVRKADTTVELPSGG 366 + TP + G + L + V E ++P +R++D+ + G Sbjct: 1 MDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGD 60 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +V+ GL+K + +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 61 VVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 113 >gi|254508151|ref|ZP_05120276.1| fimbrial assembly protein [Vibrio parahaemolyticus 16] gi|219548873|gb|EED25873.1| fimbrial assembly protein [Vibrio parahaemolyticus 16] Length = 553 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 104/333 (31%), Gaps = 76/333 (22%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + T + + +++ L+I + QV Sbjct: 245 KASEIAEMIGGQGAASMLSERGSLTVDERTNALLIRDLKENIDVIRDIIDTLDIPVK-QV 303 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232 ++ I V L ++G + T ++ + + Sbjct: 304 QIEARIVSVNEGNLDELGVRWGFTSTNGNNTVGGSIESNLFQAGLLEGDNLPVDDFLNVN 363 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + F V + + L AL+R + ++ P L + + A G + Sbjct: 364 LGATSATASSIAFQVAKLGSDLLLDLELSALQRESKAEVISSPRLITTNKKPAYIEQGTE 423 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350 Y SS+GAT+VT + L TP + R+ L + P V+ G+ + Sbjct: 424 IPYLES-SSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLNVTQDRPGDVVKTGTGEAVA 482 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF------------ 398 ++ T V + +G T+VL G+ F Sbjct: 483 INTQRIGTQVLVENGETVVLGGI------------------------FQHSVTDTVDKVP 518 Query: 399 ------------RNSRFNREETEIFIAATPFLV 419 R S ++E+ I TP +V Sbjct: 519 LLGDLPLLGALFRRSYQQMGKSELLIFVTPKVV 551 >gi|300940175|ref|ZP_07154781.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 21-1] gi|300455011|gb|EFK18504.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 21-1] Length = 410 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L V I +R+ +Q G + S S + F Sbjct: 173 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 232 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 + L AL + + + + Q Y ++ +V Sbjct: 233 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 292 Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 T G + P +L + + L + + G + +P+ ++ + Sbjct: 293 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 352 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TV+L SG T++++G + + K+G+ P L ++T + + TP Sbjct: 353 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 408 Query: 418 LV 419 ++ Sbjct: 409 II 410 >gi|318040699|ref|ZP_07972655.1| general secretory pathway protein D [Synechococcus sp. CB0101] Length = 167 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 5/146 (3%) Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNA 345 + K + + G+ + G + + E+S V Sbjct: 3 TQYVTAYAVKQDINGNNFCEPKFGNAGLTFGARVDKIDDNGFVTFSLSPEISAAVGTQQI 62 Query: 346 GD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + R DT V + G T++L G++ D+ + + P+L +P++G FR S Sbjct: 63 DRCGIIYQINDRLLDTGKVRVRDGQTLILTGVISDEDRSVVTKWPILGDLPLVGQFFRRS 122 Query: 402 RFNREETEIFIAATPFLVKPVAMRDL 427 +R ++E+ I TP +VK D Sbjct: 123 SGDRRKSELVIMVTPRIVKDDQGGDY 148 >gi|301030047|ref|ZP_07193001.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 196-1] gi|299877181|gb|EFI85392.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 196-1] Length = 403 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L V I +R+ +Q G + S S + F Sbjct: 166 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 225 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 + L AL + + + + Q Y ++ +V Sbjct: 226 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 285 Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 T G + P +L + + L + + G + +P+ ++ + Sbjct: 286 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 345 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TV+L SG T++++G + + K+G+ P L ++T + + TP Sbjct: 346 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 401 Query: 418 LV 419 ++ Sbjct: 402 II 403 >gi|149925492|ref|ZP_01913756.1| Type II secretory pathway component PulD-like protein [Limnobacter sp. MED105] gi|149825609|gb|EDM84817.1| Type II secretory pathway component PulD-like protein [Limnobacter sp. MED105] Length = 633 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 82/242 (33%), Gaps = 15/242 (6%) Query: 191 AGEDQVTLKVTIAEVRR--------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 G + + V + + ++L + Q + Sbjct: 310 GGPRMLLIDVILLSTQELISTSKGVNLLNALTLQLGNVAGNVAAYSRVNNSTVTNGGPAD 369 Query: 243 GDFSVKGVLDRFSFETVLH-ALERATAIRTLAEPTLTAISGQSASFTSGGQ---HLYKTV 298 ++ + + L+ A ++ LA PTL AI G + F SG T Sbjct: 370 VSTAITRAVTIPALSYSLNIANANSSLNEVLARPTLAAIEGLPSEFFSGTNLSAGFVSTS 429 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRK 355 G+ L TP L GRI L+++ + + + Sbjct: 430 VQGGTTVVPLEKRIGIKLAVTPVFLPQGRIQLKVEAQRTNLNATTENPRVAYQIEIGETT 489 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A+ V + G T+VL+GL + ++G+P L +P L LF N R N + + I T Sbjct: 490 ANANVVMNLGDTLVLSGLSEKSSASNRDGVPGLQDVPGLQYLFSNKRTNDLQRSVLILVT 549 Query: 416 PF 417 P Sbjct: 550 PR 551 >gi|153827975|ref|ZP_01980642.1| VcsC2 [Vibrio cholerae 623-39] gi|148876556|gb|EDL74691.1| VcsC2 [Vibrio cholerae 623-39] Length = 467 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 58/288 (20%), Positives = 101/288 (35%), Gaps = 10/288 (3%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184 + + + + + + RA ++ + + N + Sbjct: 169 QATFPGAQSLIASAITNIGQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 228 Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 N L + G D+V L IA + +Q+ F + S+ + F D S G Sbjct: 229 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGI 288 Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D V + F HAL R + E L + Q F S Sbjct: 289 YDLVVPPFTETTDFLRNFHALTSNGIARGVYETNLLVLENQQGHFGKKQT--ATIALISN 346 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTT 359 + L+ T +L G + RI + + + N+ P + ++ Sbjct: 347 RQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSLNSE 406 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 V + G TI+L G QQ+K GIP+LS IP+LG LF+++ + + Sbjct: 407 VYIKPGQTIILGGFDNTVTQQMKSGIPVLSSIPLLGELFKSTSEVKSK 454 >gi|325284394|ref|YP_004256934.1| type II and III secretion system protein [Deinococcus proteolyticus MRP] gi|324316458|gb|ADY27571.1| type II and III secretion system protein [Deinococcus proteolyticus MRP] Length = 784 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 101/257 (39%), Gaps = 16/257 (6%) Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEVRRDILKQIGFQHSITG 221 L++ + + V + I Q V + + + +V++ K +G + Sbjct: 442 LADDRTNSLLIVGPRGVVEEMVTAVQTIDVPVQAVRVNLKVLQVKQSDAKALGLDWKLGL 501 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + G S S E L+A RTL + TA+S Sbjct: 502 GGVTFGQQNGSLSLGYTPSLTPA----------SIEAKLNATLSNGNGRTLIDSQFTALS 551 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 GQ F +GG+ +++ SS+ G +V T + YG+ + P + G + L + T + Sbjct: 552 GQETKFQNGGELVFRPQSSTVGDNTVQTPAQTYSYGLDITMRPRIAPDGTVVLVLDTTLG 611 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 P + D + TTV++ G T+VL G++ + GIP L +P++G L Sbjct: 612 NPPVR-GVLDSIQQTRQALKTTVQIRPGETVVLGGVVTSSVSNSSSGIPGLRDLPVIGPL 670 Query: 398 FRNSRFNREETEIFIAA 414 F +R + + Sbjct: 671 FGQQSTDRNDDALLFVL 687 >gi|85713096|ref|ZP_01044131.1| type IV pilus protein, PilN [Idiomarina baltica OS145] gi|85693082|gb|EAQ31045.1| type IV pilus protein, PilN [Idiomarina baltica OS145] Length = 489 Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 86/274 (31%), Gaps = 26/274 (9%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + + +N LN + QV L V + EVR D +Q S + Sbjct: 219 ANASALLVKDTPSVIKQVDRYINQLNKSLTRQVALDVQVIEVRFDDSEQFTVDWSSVRRT 278 Query: 224 SGPSKSFAADFGGK--FVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAI 280 S + + G G F + + + + ++ AL+ ++ P + + Sbjct: 279 SQGTPWLTSQSGSDNWLQQAAGRFILSPLSGPRNSIDILVQALQEQGQVKVSHHPRILTL 338 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHD--------YGVVLHFTPTVLSPGRI---- 328 + Q A + Y S + V G + P +L + Sbjct: 339 NHQVAQLLVEEEQAYLAESEVSTTPYVGQQQRLKPGKLTTGFRMFVLPNILKRDVLLHLS 398 Query: 329 -GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ--QLKEGI 385 + ++ G N P + + T++L G +Q + + G+ Sbjct: 399 SQMSALQGMNVVQSGDNMIQTPHTSRKHFFLKALVGHEETLLLTGFRNQTVQAGRTRSGV 458 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L L + +RE +E + TP +V Sbjct: 459 SWL--------LGGGQQKSRENSETLLLITPRIV 484 >gi|289628765|ref|ZP_06461719.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 578 Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196 +T +L + ++ +LS S + N N A QV Sbjct: 280 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 339 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255 V + E Q+ + +S + +S G++D + Sbjct: 340 LFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPGISSSAISGSVGIVDTANS 399 Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 ++ A+ I + P++T ++ Q A G Y + SV + Sbjct: 400 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 459 Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G + P ++ I + + ++ +P+Y + Sbjct: 460 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 519 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V+L SG T++L+G +++ + I P L + ++ + + TP Sbjct: 520 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSILVVLITPI 575 Query: 418 L 418 + Sbjct: 576 V 576 >gi|217077653|ref|YP_002335371.1| general secretion pathway protein D, putative [Thermosipho africanus TCF52B] gi|217037508|gb|ACJ76030.1| general secretion pathway protein D, putative [Thermosipho africanus TCF52B] Length = 368 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 72/221 (32%), Gaps = 21/221 (9%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 ++V I E+ K+ G + G+ + +F Sbjct: 164 IQVKIIEIDESDFKKFGVSWNNEE-------------NNTTSYNNGNLQLSLNPLNVNFN 210 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 ++ L + + LAE TL S ++ T + +T + H Sbjct: 211 IIMDTLISSGNAKVLAEGTLKLKSNSTSQITGYTTVGFTIGKDNTYVEKKINTQIIISGH 270 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 L +++ V + + +T +++ +AGL D Sbjct: 271 V-----FTDHANLTLKSIVESFIQNSSTFTPVGAS---VETNLDIKYEQPYYIAGLSFDS 322 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + GIP L IPI+G LF+NS + + I I L Sbjct: 323 VTKQDGGIPGLKDIPIIGNLFKNSTYTSRKKNIVIFIKARL 363 >gi|68637854|emb|CAI36059.1| type IV pilus protein [Pseudomonas syringae pv. phaseolicola] Length = 578 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196 +T +L + ++ +LS S + N N A QV Sbjct: 280 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 339 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255 V + E Q+ + +S + +S G++D + Sbjct: 340 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 399 Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 ++ A+ I + P++T ++ Q A G Y + SV + Sbjct: 400 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 459 Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G + P ++ I + + ++ +P+Y + Sbjct: 460 AITPGTITSGFNMTLQPRLIDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 519 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V+L SG T++L+G +++ + I P L + ++ + + TP Sbjct: 520 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 575 Query: 418 L 418 + Sbjct: 576 V 576 >gi|330870423|gb|EGH05132.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 578 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196 +T +L + ++ +LS S + N N A QV Sbjct: 280 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 339 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255 V + E Q+ + +S + +S G++D + Sbjct: 340 LFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPGISSSAISGSVGIVDTANS 399 Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 ++ A+ I + P++T ++ Q A G Y + SV + Sbjct: 400 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 459 Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G + P ++ I + + ++ +P+Y + Sbjct: 460 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 519 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V+L SG T++L+G +++ + I P L + ++ + + TP Sbjct: 520 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSILVVLITPI 575 Query: 418 L 418 + Sbjct: 576 V 576 >gi|76819723|ref|YP_335816.1| hypothetical protein BURPS1710b_A0657 [Burkholderia pseudomallei 1710b] gi|76584196|gb|ABA53670.1| unknown [Burkholderia pseudomallei 1710b] Length = 888 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S ++V + QV L VT+ V G ++ Sbjct: 608 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 667 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277 + F ++ D S + F ++ AL + +R ++ Sbjct: 668 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 727 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329 T ++ Q Q Y S+T +V + G + P VL G + Sbjct: 728 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 787 Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 L+ T +S E + P +R V + SG T+V++G + Sbjct: 788 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 847 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ P + AL R I I TP Sbjct: 848 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 881 >gi|213026060|ref|ZP_03340507.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 173 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 6/168 (3%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L+ALE+++ L++P++ ++ A K + + G + Sbjct: 1 FMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSL 58 Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLA 371 L TP +L+ +I L + + + + +P + + + L +G +++L Sbjct: 59 LRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLG 118 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G + + IPLL IP++G LFRN +V Sbjct: 119 GFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVV 166 >gi|94969549|ref|YP_591597.1| TPR repeat-containing protein [Candidatus Koribacter versatilis Ellin345] gi|94551599|gb|ABF41523.1| TPR repeat protein [Candidatus Koribacter versatilis Ellin345] Length = 619 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 91/292 (31%), Gaps = 58/292 (19%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 A QV L V++ V + Q+G Q ++ A S G Sbjct: 319 ASRPQVALDVSVYRVSGTLTHQLGVQPPNQFTTFNLGSVLAGLGATNLQSLINQIISSGA 378 Query: 251 LD---RFSFETVL-HALERATAIRTLAEPTLT---------------------------- 278 ++ ++ AL P +T Sbjct: 379 INQANGTDISALITQALGNTQLATLFQTPFVTYGGGLTLMALTVPGTTLNLNFSKANFQN 438 Query: 279 -------AISGQSASFTSGGQHLY------------------KTVSSSTGATSVTTHDYG 313 A +A+ G ++ +T + S D G Sbjct: 439 LAHMQLRASQNNAATMRIGERYPILNATFAPIYNTPQISALLRTGTYVAPFPSFNYEDLG 498 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + + TP++ + L ++ ++ G + MP ++ T+ L G V+ Sbjct: 499 LTVKATPSIQGNRDVRLNLEMQMRSLGAGTS-NGMPIINNQEYKGTISLKDGEPGVVVSY 557 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 L + + GIP L +IP LG+ ++ E+E+ + TP ++K + + Sbjct: 558 LTESESRSISGIPGLGQIPGLGSAVASTDREGVESELLVIITPHVLKVIEPK 609 >gi|221271462|dbj|BAH15014.1| putative type III secretion system apparatus protein VscC2 [Vibrio parahaemolyticus] Length = 488 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 98/289 (33%), Gaps = 11/289 (3%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184 + + + + + + RA ++ + + N + Sbjct: 189 QATFPGAQSLIAAAITNIGQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 248 Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 N L + G D+V L IA + +Q+ F + S+ ++F D S G Sbjct: 249 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKENFGVDSSWVNGSRGV 308 Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D V + F AL R + E L + Q F S Sbjct: 309 YDLVVPPFTETIDFLRNFQALASNGIARGVYETNLLVLENQQGHFGKKQT--ATIALISN 366 Query: 303 GATSVTTHDYGVVLHFT----PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 + L+ T P+ RI ++ + N+ P + ++ Sbjct: 367 RQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDEEDSDNSNRPPRVSSQSLNS 426 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 V + G TI+L G QQ + GIP+LS IP+LG LF+++ + + Sbjct: 427 EVYIKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475 >gi|209922067|ref|YP_002296140.1| lipoprotein PilN [Escherichia coli SE11] gi|209915245|dbj|BAG80318.1| lipoprotein PilN [Escherichia coli SE11] Length = 560 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + + + + ++ N QV L V + V +Q G ++ S Sbjct: 281 ASSSTLTVTDTPAVQEAVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKS 340 Query: 224 SGPSKSFAADFGGKFVSEGGDF------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + + G F + ++ AL + + Sbjct: 341 LHSAGATLNNASGDFTGATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQES 400 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 T + Q +Y S++T T V G + P + G + Sbjct: 401 TVTNLTPVPIQMADQTVYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQ 460 Query: 330 LRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 L++ +S+P G + +MP ++R V L G ++V+ G +++ Sbjct: 461 LQMNFNLSDPPTIRSFTSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTS 520 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 K G P+ G + E + + I TP Sbjct: 521 KAGT-FTPANPLFG---GSQTGKNERSTLVIIITPT 552 >gi|148241667|ref|YP_001226824.1| Type II secretory pathway, component PulD [Synechococcus sp. RCC307] gi|147849977|emb|CAK27471.1| Type II secretory pathway, component PulD [Synechococcus sp. RCC307] Length = 760 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 81/186 (43%), Gaps = 13/186 (6%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTH 310 F + AL R+++ + +A+PTL +S+S G T ++ T + Sbjct: 557 QFFDFVKALIRSSSAKVVADPTLLVQESESSSVGVGTTVFVNCSSSTSANGTRNFTPKKE 616 Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPV-----IGVNAGDMPS--YRVRKADT-TVE 361 G+ + + G + L + + P + D+P+ VR+ + Sbjct: 617 TAGLQVDVSVSRIDDNGFVSLALNPVLKAPSGLPVPVNCGGIDLPTRDLAVRELRSGEFR 676 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G T++L G++++++ + + PLL +P++G FR S R++ E+ I TP ++ Sbjct: 677 VRDGQTLILTGVIQEEVLESVDKWPLLGDVPLIGQFFRKSSNTRQKRELVIVVTPRILDD 736 Query: 422 VAMRDL 427 + Sbjct: 737 NQGGNY 742 >gi|171911301|ref|ZP_02926771.1| type II and III secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 173 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 1/101 (0%) Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + + N + P + RK T V + G T+ + GL+++D+Q +++ +P+L +P LG Sbjct: 50 TTVTLTENKIEQPVFSTRKVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDLPFLGR 109 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 LF++ + + + I T L+ P + + +P + Sbjct: 110 LFQSKAEDHFKRNLMILVTAKLIDP-SGEPVRKPAPAPTAP 149 >gi|261226370|ref|ZP_05940651.1| type IV pilus outer membrane secretin lipoprotein PilN [Escherichia coli O157:H7 str. FRIK2000] Length = 547 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 21/289 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L V ++ T S ++++N N QV L V I ++ Sbjct: 252 LKSEVSSMLTPGTGRMYLSTGSLTVTDTPDVLDSVQEIVNKRNNEMSRQVVLNVEILSIK 311 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +Q G + + S FG + + L AL Sbjct: 312 KSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAENVITSGVSIVDGKLAGSKAFLKALSSQ 371 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318 ++ + + + + Q + ++ +V T G + Sbjct: 372 GSVSVVTQNSAVTKNLTPVPMQIANQQGFIESVTTDSTANVGSSTSLNAATITTGFNMTL 431 Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 P + + + L + G + P+ ++ + T++L SG T++L+ Sbjct: 432 LPYIQPDSQNLQLLFSMSLSDKPTFEVFESGGSKAQTPNVDLKTINQTIDLKSGQTVILS 491 Query: 372 GLLKDDIQQLKEGIPLLSKI-PILGALFRNSRFNREETEIFIAATPFLV 419 G + + + K+G+ I P L +T + + TP ++ Sbjct: 492 GFQQSNRKTSKQGV-----ITPSFFGLGGGINSEDGDTILVVLITPNVL 535 >gi|320198845|gb|EFW73444.1| IncI1 plasmid conjugative transfer lipoprotein PilN [Escherichia coli EC4100B] Length = 547 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 21/289 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L V ++ T S ++++N N QV L V I ++ Sbjct: 252 LKSEVSSMLTPGTGRMYLSTGSLTVTDTPDVLDSVQEIVNKRNNEMSRQVVLNVEILSIK 311 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +Q G + + S FG + + L AL Sbjct: 312 KSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAENVITSGVSIVDGKLAGSKAFLKALSSQ 371 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318 ++ + + + + Q + ++ +V T G + Sbjct: 372 GSVSVVTQNSAVTKNLTPVPMQIANQQGFIESVTTDSTANVGSSTSLNAATITTGFNMTL 431 Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 P + + + L + G + P+ ++ + T++L SG T++L+ Sbjct: 432 LPYIQPDSQNLQLLFSMSLSDKPTFEVFESGGSKAQTPNVDLKTINQTIDLKSGQTVILS 491 Query: 372 GLLKDDIQQLKEGIPLLSKI-PILGALFRNSRFNREETEIFIAATPFLV 419 G + + + K+G+ I P L +T + + TP ++ Sbjct: 492 GFQQSNRKTSKQGV-----ITPSFFGLGGGINSEDGDTILVVLITPNVL 535 >gi|83404883|ref|YP_424898.1| PilN [Escherichia coli] gi|299836184|ref|YP_003717753.1| putative lipoprotein [Escherichia coli ETEC 1392/75] gi|46949078|gb|AAT07432.1| PilN [Escherichia coli] gi|83308609|emb|CAI79602.1| lipoprotein (PilN protein) [Escherichia coli] gi|297374533|emb|CBL93616.1| putative lipoprotein [Escherichia coli ETEC 1392/75] Length = 560 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + + + + ++ N QV L V + V +Q G ++ S Sbjct: 281 ASSSTLTVTDTPAVQEAVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKS 340 Query: 224 SGPSKSFAADFGGKFVSEGGDF------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + + G F + ++ AL + + Sbjct: 341 LHSAGATLNNASGDFTGATSAGVSILDSATGNAAKFSGSSLLIKALSEQGDVSVVTSQES 400 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 T + Q +Y S++T T V G + P + G + Sbjct: 401 TVTNLTPVPIQMADQTVYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQ 460 Query: 330 LRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 L++ +S+P G + +MP ++R V L G ++V+ G +++ Sbjct: 461 LQMNFNLSDPPTIRSFTSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTS 520 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 K G P+ G + E + + I TP Sbjct: 521 KAGT-FTPANPLFG---GSQTGKNERSTLVIIITPT 552 >gi|289647482|ref|ZP_06478825.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 542 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196 +T +L + ++ +LS S + N N A QV Sbjct: 244 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 303 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255 V + E Q+ + +S + +S G++D + Sbjct: 304 LFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPGISSSAISGSVGIVDTANS 363 Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 ++ A+ I + P++T ++ Q A G Y + SV + Sbjct: 364 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 423 Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G + P ++ I + + ++ +P+Y + Sbjct: 424 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 483 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V+L SG T++L+G +++ + I P L + ++ + + TP Sbjct: 484 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSILVVLITPI 539 Query: 418 L 418 + Sbjct: 540 V 540 >gi|66044764|ref|YP_234605.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63255471|gb|AAY36567.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 578 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196 +T +L + ++ +LS S + N N A QV Sbjct: 280 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 339 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255 V + E Q+ + +S + +S G++D + Sbjct: 340 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 399 Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 ++ A+ I + P++T ++ Q A G Y + SV + Sbjct: 400 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 459 Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G + P ++ I + + ++ +P+Y + Sbjct: 460 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 519 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V+L SG T++L+G +++ + I P L + ++ + + TP Sbjct: 520 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 575 Query: 418 L 418 + Sbjct: 576 V 576 >gi|301646351|ref|ZP_07246238.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 146-1] gi|301075418|gb|EFK90224.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 146-1] Length = 547 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 21/289 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L V ++ T S ++++N N QV L V I ++ Sbjct: 252 LKSEVSSMLTPGTGRMYLSTGSLTVTDTPDVLDSVQEIVNKRNNEMSRQVVLNVEILSIK 311 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +Q G + + S FG + + L AL Sbjct: 312 KSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAENVITSGVSIVDGKLAGSKAFLKALSSQ 371 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318 ++ + + + + Q + ++ +V T G + Sbjct: 372 GSVSVVTQNSAVTKNLTPVPMQIANQQGFIESVTTDSTANVGSSTSLNAATITTGFNMTL 431 Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 P + + + L + G + P+ ++ + T++L SG T++L+ Sbjct: 432 LPYIQPDSQNLQLLFSMSLSDKPTFEVFESGGSKAQTPNVDLKTINQTIDLKSGQTVILS 491 Query: 372 GLLKDDIQQLKEGIPLLSKI-PILGALFRNSRFNREETEIFIAATPFLV 419 G + + + K+G+ I P L +T + + TP ++ Sbjct: 492 GFQQSNRKTSKQGV-----ITPSFFGLGGGINSEDGDTILVVLITPNVL 535 >gi|9507539|ref|NP_052546.1| lipoprotein [Plasmid ColIb-P9] gi|32470260|ref|NP_863484.1| lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|168758374|ref|ZP_02783381.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4401] gi|168770673|ref|ZP_02795680.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4486] gi|194447046|ref|YP_002039161.1| type IVB pilus formation outer membrane protein, R64 PilN family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194447207|ref|YP_002043952.1| type IVB pilus formation outer membrane protein, R64 PilN family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195940171|ref|ZP_03085553.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4024] gi|256367618|ref|YP_003108177.1| lipoprotein [Escherichia coli] gi|307313385|ref|ZP_07593008.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli W] gi|4512536|dbj|BAA75185.1| lipoprotein [Plasmid ColIb-P9] gi|4903089|dbj|BAA77974.1| lipoprotein [Plasmid R64] gi|20521628|dbj|BAB91692.1| PilN type IV pilus secretin [Salmonella enterica subsp. enterica serovar Typhimurium] gi|70610254|gb|AAZ05401.1| lipoprotein [Salmonella enterica] gi|85813727|emb|CAJ65888.1| lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|189354781|gb|EDU73200.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4401] gi|189360460|gb|EDU78879.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4486] gi|194358490|gb|ACF56934.1| type IVB pilus formation outer membrane protein, R64 PilN family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194405511|gb|ACF65732.1| type IVB pilus formation outer membrane protein, R64 PilN family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|228480873|gb|ACQ42199.1| lipoprotein [Escherichia coli] gi|306906807|gb|EFN37317.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli W] gi|315063763|gb|ADT78089.1| Type IVB thin prepilin secretin [Escherichia coli W] gi|321271467|gb|ADW79557.1| IncI1 conjugal transfer protein PilN [Escherichia coli] gi|321271565|gb|ADW79654.1| IncI1 conjugal transfer protein PilN [Escherichia coli] gi|321271661|gb|ADW79749.1| IncI1 conjugal transfer secretin protein PilN [Salmonella enterica subsp. enterica serovar Kentucky] gi|323133139|gb|ADX20567.1| lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323381016|gb|ADX53283.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli KO11] gi|323959238|gb|EGB54902.1| R64 PilN family protein type IVB pilus formation outer membrane protein [Escherichia coli H489] gi|330907922|gb|EGH36445.1| incI1 plasmid conjugative transfer lipoprotein PilN [Escherichia coli AA86] gi|332346621|gb|AEE59953.1| IncI1 conjugal transfer secretin protein PilN [Escherichia coli UMNK88] Length = 560 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + + + + ++ N QV L V + V +Q G ++ S Sbjct: 281 ASSSTLTVTDTPAVQEAVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKS 340 Query: 224 SGPSKSFAADFGGKFVSEGGDF------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + + G F + ++ AL + + Sbjct: 341 LHSAGATLNNASGDFTGATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQES 400 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 T + Q +Y S++T T V G + P + G + Sbjct: 401 TVTNLTPVPIQMADQTVYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQ 460 Query: 330 LRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 L++ +S+P G + +MP ++R V L G ++V+ G +++ Sbjct: 461 LQMNFNLSDPPTIRSFTSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTS 520 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 K G P+ G + E + + I TP Sbjct: 521 KAGT-FTPANPLFG---GSQTGKNERSTLVIIITPT 552 >gi|330900252|gb|EGH31671.1| type II and III secretion system protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 552 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196 +T +L + ++ +LS S + N N A QV Sbjct: 254 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 313 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255 V + E Q+ + +S + +S G++D + Sbjct: 314 LFNVKVFEATLTDTDQLALNWAAVYNSLSTRWGLSLSNTVPGISSSAISGSVGIVDTANS 373 Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 ++ A+ I + P++T ++ Q A G Y + SV + Sbjct: 374 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 433 Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G + P ++ I + + ++ +P+Y + Sbjct: 434 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 493 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V+L SG T++L+G +++ + I P L + ++ + + TP Sbjct: 494 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 549 Query: 418 L 418 + Sbjct: 550 V 550 >gi|229529211|ref|ZP_04418601.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)] gi|229332985|gb|EEN98471.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)] Length = 489 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 53/345 (15%), Positives = 114/345 (33%), Gaps = 51/345 (14%) Query: 69 VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 + V D + A D V+ P L + N+ + + L + + Sbjct: 177 ISVMDRSIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L + ++ S+ +++ G ++ + A ++ Sbjct: 235 LEEDEKSTKVQALPGSNALLVRGT---QEEVKLAKRIAA--------------------- 270 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 L+++ Q+ + + ++ + + +G S G F Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDIVVPPFT----------- 318 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + F AL R++ E L A+ Q F + S Sbjct: 319 -----ETTDFLKNFQALYTNGIARSVYETNLLALENQQGQFGKKQTATLTLI--SNREVK 371 Query: 307 VTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVEL 362 + L+ T +L G++ ++ E + + G P + ++ V + Sbjct: 372 TEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDDEGENSDGSQRPPRVSSQSLNSEVYI 431 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 G T++L G QQ + G+P+LS IP+LG LF+ + ++ + Sbjct: 432 QPGQTVILGGFDNTVTQQQESGVPVLSSIPLLGELFKYTSESKHK 476 >gi|255595192|ref|XP_002536247.1| conserved hypothetical protein [Ricinus communis] gi|223520311|gb|EEF26137.1| conserved hypothetical protein [Ricinus communis] Length = 316 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 325 PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 ++ +++ EVS V + R A+TT++L + T +LAGL +DD Q+ Sbjct: 2 QDQVSIKVGMEVSNITDQVTTSSGVLAYTIGSRNANTTLQLRNNETQILAGLFRDDEQKT 61 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + +P L +P++G LF ++ ++ + EI + TP ++ ++ Sbjct: 62 RRKVPGLGNLPLIGKLFSSNNEDKRKNEIVLLITPRIMHNLSPAS 106 >gi|148240700|ref|YP_001226087.1| general secretory pathway protein D [Synechococcus sp. WH 7803] gi|147849239|emb|CAK24790.1| General secretory pathway protein D [Synechococcus sp. WH 7803] Length = 773 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 70/207 (33%), Gaps = 33/207 (15%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F L A ++++ + LA PTL G ++ S + T+ G Sbjct: 549 NQFFDFLAAQIQSSSTKILASPTLIIQEGSESTQGSDASKISADGKVGRERTNEALVSVG 608 Query: 314 VVLHF----------------------------TPTVLSPGRIGLRIQTEVSE----PVI 341 L + G + + E+S P Sbjct: 609 TKLVTSFEVKQDENGNNFCQPVFSNAGLTFGARVEKIDDNGFVTFSLSPEISAAVGVPET 668 Query: 342 GVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 N G++ R DT + + G T++L G++ D Q P+L IP +G FR+ Sbjct: 669 IGNCGNINIINSRTLDTGKIRVRDGQTLILTGVISDTDVQAVTKWPILGDIPFIGQFFRS 728 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDL 427 S +R + E+ I TP ++ Sbjct: 729 SSGDRTKNELVILVTPRIIDDTQGGSY 755 >gi|315186870|gb|EFU20628.1| type II and III secretion system protein [Spirochaeta thermophila DSM 6578] Length = 696 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 90/238 (37%), Gaps = 9/238 (3%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + Q+ + + + ++ ++ + + + + G V Sbjct: 438 RPQPQIRYDILVVQYQKSEGSDWSRNLDVSLTDTSVEQEPFSLVGSMGNLVSLGIDVVSE 497 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQ------SASFTSGGQHLYKTVSSSTGA 304 ++F + L+ + A TLTA+SG+ +++F + Sbjct: 498 FG-YTFASQLNLKLEESRANIYAHTTLTALSGKDVSFQNTSTFRYRDLEVDPDTGELLST 556 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVEL 362 + G +L+ V G I + I +SE + +P R T + Sbjct: 557 GVIRELTSGFILNLGGWVSGDGMITMNISATLSERSSESSDSTSAIPPTTERVVSTFLRT 616 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 SG + ++GL++ ++ +P+L IP+LG LFRNS+ E+ E+ I P ++ Sbjct: 617 DSGKPVSISGLVQKKKTKIVNKVPVLGDIPLLGFLFRNSQEKEEDMEMVIYVVPRVMD 674 >gi|300819642|ref|ZP_07099834.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 107-1] gi|300907596|ref|ZP_07125231.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 84-1] gi|301306610|ref|ZP_07212671.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 124-1] gi|300400664|gb|EFJ84202.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 84-1] gi|300527809|gb|EFK48871.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 107-1] gi|300838171|gb|EFK65931.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 124-1] gi|315252987|gb|EFU32955.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 85-1] gi|315295843|gb|EFU55160.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 16-3] gi|324020971|gb|EGB90190.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 117-3] Length = 552 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + + + + ++ N QV L V + V +Q G ++ S Sbjct: 273 ASSSTLTVTDTPAVQEAVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKS 332 Query: 224 SGPSKSFAADFGGKFVSEGGDF------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + + G F + ++ AL + + Sbjct: 333 LHSAGATLNNASGDFTGATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQES 392 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 T + Q +Y S++T T V G + P + G + Sbjct: 393 TVTNLTPVPIQMADQTVYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQ 452 Query: 330 LRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 L++ +S+P G + +MP ++R V L G ++V+ G +++ Sbjct: 453 LQMNFNLSDPPTIRSFTSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTS 512 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 K G P+ G + E + + I TP Sbjct: 513 KAGT-FTPANPLFG---GSQTGKNERSTLVIIITPT 544 >gi|330952555|gb|EGH52815.1| type II and III secretion system protein [Pseudomonas syringae Cit 7] Length = 547 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 93/301 (30%), Gaps = 29/301 (9%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196 +T +L + +Q +LS S + N N + QV Sbjct: 249 NTSILTDIQSNVQAMLSTSPPGRMYLSPSTGTLTVTDRPDVLANVETYLAKTNHSITQQV 308 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255 V + E Q+ + +S + +S G++D + Sbjct: 309 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 368 Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 ++ A+ I + P++T ++ Q A G Y + SV + Sbjct: 369 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 428 Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G + P ++ I + + ++ +P+Y + Sbjct: 429 AITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPFTSNGSSVQIPNYDAKSLS 488 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V+L SG T++L+G D++ + I P L ++ + + TP Sbjct: 489 PKVKLRSGQTLILSGF--DELNDNTDKI-GTGS-PGFFGLGGGRTRTSSQSFLVVLITPI 544 Query: 418 L 418 + Sbjct: 545 V 545 >gi|89885888|ref|YP_516086.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89347886|gb|ABD72088.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 622 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 81/249 (32%), Gaps = 25/249 (10%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSVKGVL 251 + I EV Q G + + + GP S A S G FS Sbjct: 192 IVFDTYIYEVNLTDGAQTGIKWNKLAMAIGPGGSLGALGAVGGSTVADSGGMGFSAIYKG 251 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 RF + L+ ++T+A+P + +SG F +G Y + + +T++ Sbjct: 252 SRFDLDAFFSFLQTQGNVKTIAQPKIAIMSGSKGGFKAGSTTKYVSQVGTNSSTTINQTT 311 Query: 312 Y-------GVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 G+ L T V RI L + + +P R+ T Sbjct: 312 VSTDTAVSGLDLSLTGDVSDGTVYARIRISLSELIRFNSFEALGTSLQLPQTTSRELTTA 371 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSK---IPILGALFRNSRFNREETEIFIAATP 416 + G ++L G+ G+P +P +S TE+ + P Sbjct: 372 IRARPGDVVLLGGVNNSSESSDYSGLPGEKGQMLVP------TSSNKKVARTELVMVMKP 425 Query: 417 FLVKPVAMR 425 +V+ + Sbjct: 426 KIVRFSNPQ 434 >gi|153930668|ref|YP_001393312.1| PilN family type IV pilus biogenesis protein [Yersinia pseudotuberculosis IP 31758] gi|152958209|gb|ABS45671.1| type IV pilus biogenesis protein, PilN family [Yersinia pseudotuberculosis IP 31758] Length = 564 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 83/254 (32%), Gaps = 23/254 (9%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSEGG 243 + NI QV L V I V L +G ++ S + + Sbjct: 315 IASENIKITQQVLLNVKILSVSLKDLDDLGLDWNVIYKSMSGKWGINLKNAFSDLATNAT 374 Query: 244 DFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 S+ + F+ ++ AL + + P++T ++ Q A Q Y S Sbjct: 375 SGSISILDPNSQFDGTTMLIKALSEQGKVSVVTSPSITTLNLQPAPVQVSRQTSYLASRS 434 Query: 301 STGATS--------VTTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNA 345 +T T+ T G + P ++ R I L ++ + N Sbjct: 435 TTSTTNAGTETSLTPGTVTTGFNMSLLPAIIPDTRDLLLQYNINLSSLIQIRKIGTENNQ 494 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +MP R V+L SG T+V++G + K G+ G N Sbjct: 495 IEMPDTDSRIFSQQVKLRSGETLVISGFEQTADNANKSGV---GDAEFWG-FGGARSRNS 550 Query: 406 EETEIFIAATPFLV 419 I + TP L+ Sbjct: 551 TRDIIVVIITPVLL 564 >gi|83716256|ref|YP_438966.1| type IV pilus biogenesis protein PilN [Burkholderia thailandensis E264] gi|83650081|gb|ABC34145.1| type IV pilus biogenesis protein PilN, putative [Burkholderia thailandensis E264] Length = 878 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 87/278 (31%), Gaps = 29/278 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S ++V + QV L VT+ V G S+ Sbjct: 598 VSSPATGSISVTDTPDVLERVAAFMTQQNRSLSRQVLLNVTVLSVSLKAGDAYGIDWSLV 657 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277 + + F +++ D S + F ++ AL + +R ++ Sbjct: 658 YKTMSAGFNITNPFNPVSLTKPADLSATVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 717 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329 T ++ Q Q Y S+T +V + G + P VL G + Sbjct: 718 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 777 Query: 330 LRIQTEVSEPVI-----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 L+ T +S + P +R V + SG T+V++G + Sbjct: 778 LQFSTNISSLLQLKEVSSSTGGRSAARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 837 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ P + AL R I I TP Sbjct: 838 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 871 >gi|28901194|ref|NP_800849.1| putative type III secretion system EscC protein [Vibrio parahaemolyticus RIMD 2210633] gi|260362753|ref|ZP_05775622.1| protein VcsC2 [Vibrio parahaemolyticus K5030] gi|260880041|ref|ZP_05892396.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034] gi|260895158|ref|ZP_05903654.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466] gi|28809707|dbj|BAC62682.1| putative type III secretion system EscC protein [Vibrio parahaemolyticus RIMD 2210633] gi|308085690|gb|EFO35385.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466] gi|308092233|gb|EFO41928.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034] gi|308112426|gb|EFO49966.1| protein VcsC2 [Vibrio parahaemolyticus K5030] Length = 487 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 49/343 (14%), Positives = 113/343 (32%), Gaps = 49/343 (14%) Query: 69 VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 V V D A D V+ P L + N+ + + L + + Sbjct: 177 VSVMDRNIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L + ++ ++ +++ G ++ + A ++ Sbjct: 235 LEEDEKSTKVQALPGTNALLIRGT---QEEVKLAKRIAA--------------------- 270 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 L+++ Q+ + + ++ + + +G + G F Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGNRGIYDIVVPPFT----------- 318 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + F AL R++ E L A+ Q + F + S Sbjct: 319 -----ETKDFVKNFQALYSNGIARSVYETNLVALENQQSQFGKKQTATLTLI--SDKQVK 371 Query: 307 VTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + L+ T +L G++ ++ E + ++ P + ++ V + Sbjct: 372 TEKIEADNSLYVTGRLLPSGQVQARIQYVEESLDEDDNEDSNRPPRVSSQSLNSEVYIQP 431 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 T++L G QQ + G+P++S IP+LG LF+ + ++ + Sbjct: 432 NQTVILGGFDNTVTQQQESGVPIISSIPLLGELFKYTSESKHK 474 >gi|330966660|gb|EGH66920.1| type II and III secretion system protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 578 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 77/245 (31%), Gaps = 23/245 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV V + E Q+ S S + +S G++D Sbjct: 336 TQQVLFNVKVFEATLTDTDQLALNWSAVYKSLSTKWGLSLSNSVPGISSSAISGSVGIVD 395 Query: 253 RFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + ++ A+ I + P++T ++ Q A G Y + SV Sbjct: 396 TANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASV 455 Query: 308 TTHDY--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRV 353 + G + P ++ I + + ++ +P+Y Sbjct: 456 GSSTAITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPFTSNGSSVQIPNYDA 515 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + V+L SG T++L+G D++ + I P L ++ + + Sbjct: 516 KSLSPKVKLRSGQTLILSGF--DELSDNTDKI-GTGS-PGFFGLGGGRTRTSSQSFLVVL 571 Query: 414 ATPFL 418 TP + Sbjct: 572 ITPIV 576 >gi|32471490|ref|NP_864483.1| general secretory pathway protein D [Rhodopirellula baltica SH 1] gi|32443331|emb|CAD72164.1| similar to general secretory pathway protein D [Rhodopirellula baltica SH 1] Length = 1161 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 95/326 (29%), Gaps = 81/326 (24%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQ---VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-- 227 + ++++LL Q +T++V + +QIG + + P Sbjct: 818 VVSTTSDVHDQIVDLLESLRRLQNLQITIEVRFITLSDTFFEQIGIDFDLQFDDNAPGLP 877 Query: 228 ----------------------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 S A G + +L Sbjct: 878 GDDSGPEITIGLDGDGTPTADLDIRLDQNSGATVPFGAPDAGAISTLGFAILSDIEAYFF 937 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDY 312 L A + + + P +T GQ AS + T + + D Sbjct: 938 LQAAQGDSRTNVMQAPKVTLFDGQIASIQDQTSRPFVTSIVPVVGDFAVAQQPVIVVLDE 997 Query: 313 GVVLHFTPTVLSPGR-IGLRIQTEVSEP-------------------------------- 339 G L+ V R + L + S+ Sbjct: 998 GTRLNVQGVVSEDKRFVRLTLIPTFSQIGEVNEFTFQGNSTTRNTSNRNVDTNGDGVIDE 1057 Query: 340 --------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 V P++ +TTV +P GGTI+L G+ + + + G+P LSKI Sbjct: 1058 EDEQEEESVTQGTTVQQPTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKI 1117 Query: 392 PILGALFRNSRFNREETEIFIAATPF 417 P + LFRN+ RE + + TP Sbjct: 1118 PYVSRLFRNTAVGRESRSLMMMVTPR 1143 >gi|330959534|gb|EGH59794.1| putative type II and type III secretion system pilus protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 550 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 97/294 (32%), Gaps = 19/294 (6%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 ++ G+ + + + + +G + + V ++V +V Sbjct: 254 MIGGLGNSEEAPAYIEGIRSVGIVTAGGKPSKMKVLDRYLKRAIEESTKVVNVQVEAYDV 313 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF---SVKGVLDRFSFETVLHA 262 KQ G ++ +S+ +F + F + + ++ Sbjct: 314 LLTDGKQKGIDWNLLVNSTVSGNPLGLNFFNTSPTSDDPFWNVKGTYSSSKVTASALVKF 373 Query: 263 LERATAIRTLAEPTLTAISGQSA--------SFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 LE+ + +P +T +G A ++ + + T + GV Sbjct: 374 LEQYGRVELKDQPNITVRNGVPAQIYAGEELTYIVDVEQSQDESGNVTVTPKLGRLKVGV 433 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVELPSGGTI 368 L T VL ++ + + +S + P +++ T + SG ++ Sbjct: 434 TLSVTVRVLDNDQLLVDVWPVISNLNDPDTINIGDYSFNTPRVNLKEFSTQLITSSGQSV 493 Query: 369 VLAGLLKDDIQQLKEGIPL--LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L GL+ + + +P L IL L + + E E+ + TP LV+ Sbjct: 494 HLGGLITKRMNEAMRQLPWQNLVTKAILNPLTQGINNSLERRELVLVVTPTLVQ 547 >gi|10955502|ref|NP_065354.1| type IV pilus outer membrane secretin lipoprotein PilN [Escherichia coli] gi|9971696|dbj|BAB12647.1| pilN [Escherichia coli] gi|326344460|gb|EGD68213.1| IncI1 plasmid conjugative transfer lipoprotein PilN [Escherichia coli O157:H7 str. 1125] Length = 547 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 21/289 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L V ++ T S ++++N N QV L V I ++ Sbjct: 252 LKSEVSSMLTPGTGRMYLSTGSLTVTDTPDVLDSVQEIVNKRNNEMSRQVVLNVEILSIK 311 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +Q G + + S FG + + L AL Sbjct: 312 KSSQEQAGIDWNAVFNDGHLGLSLGGSFGDAAENVITSGVSIVDGKLAGSKAFLKALSSQ 371 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318 ++ + + + + Q + ++ +V T G + Sbjct: 372 GSVSVVTQNSAVTKNLTPVPMQIANQQGFIESVTTDSTANVGSSTSLNAATITTGFNMTL 431 Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 P + + + L + G + P+ ++ + T++L SG T++L+ Sbjct: 432 LPYIQPDSQNLQLLFSMSLSDKPTFEVFESGGSKAQTPNVDLKTINQTIDLKSGQTVILS 491 Query: 372 GLLKDDIQQLKEGIPLLSKI-PILGALFRNSRFNREETEIFIAATPFLV 419 G + + + K+G+ I P L +T + + TP ++ Sbjct: 492 GFQQSNRKTSKQGV-----ITPSFFGLGGGVNSEDGDTILVVLITPNVL 535 >gi|167621192|ref|ZP_02389823.1| Type II secretory pathway, component PulD [Burkholderia thailandensis Bt4] Length = 400 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 74/231 (32%), Gaps = 18/231 (7%) Query: 191 AGEDQVTLKVTIAEVRRDILKQ--IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 +V ++ + EV + S+ G G + G Sbjct: 176 REAGEVVVRGWVYEVSNINSRNSAFSIAASLFGGIPGWGGKLSLSNGATDADPTA----- 230 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-----KTVSSSTG 303 + + AL+ + R +++P + +SG+ G Q S T Sbjct: 231 LRFSSSMLDVAISALDADSRFRQISDPHVRVVSGERVRLNVGAQVPTLGSISYQGQSGTP 290 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 SV D G++ P V+ + S + P+ R+ T V + Sbjct: 291 VQSVEYQDAGLIFDVQPVVMGDVVQVRLAEQLSSFVTTTTGVNNSPTKNTREMSTVVNMK 350 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G +VL GL++D + I L P + F ++ TE+ + Sbjct: 351 DGEVVVLGGLVQDQDTSSRNSIGWL---P---SFFDGKSGSKGRTEVLLVL 395 >gi|328469624|gb|EGF40560.1| putative type III secretion system EscC protein [Vibrio parahaemolyticus 10329] Length = 488 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 56/289 (19%), Positives = 98/289 (33%), Gaps = 11/289 (3%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184 + + + + + + RA ++ + + N + Sbjct: 189 QATFPGAQSLIAAAITNIGQFKNISDGELVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 248 Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 N L + G D+V L IA + +Q+ F + S+ + F D S G Sbjct: 249 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGV 308 Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D V + F AL R + E L A+ Q F S Sbjct: 309 YDLVVPPFSETIDFLRNFQALASNGIARGVYETNLLALENQQGHFGKKQT--ATIALISN 366 Query: 303 GATSVTTHDYGVVLHFT----PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 + L+ T P+ RI ++ + N+ P + ++ Sbjct: 367 KQVETQKIEADNSLYVTGRLLPSGDVQARIQYVEESLDDDEEDSDNSNRPPRVSSQSLNS 426 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 V + G TI+L G QQ + GIP+LS IP+LG LF+++ + + Sbjct: 427 EVYIKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475 >gi|318605712|emb|CBY27210.1| putative phage-related secreted protein [Yersinia enterocolitica subsp. palearctica Y11] Length = 420 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 93/287 (32%), Gaps = 21/287 (7%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205 G + S K++ LL + ++V + + EV Sbjct: 141 SGQISPEVAVAGTASDFMNRTGDVLVYYGRKSEIKRLQTLLPLIDTASEEVIVAAYVFEV 200 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + GS + + + G F ++ S + + Sbjct: 201 QTSERN---------GSGLALAAKLLSGKLNIQIGASGGFDNFIRVNTGSLDALYELFRT 251 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTV 322 + ++ P L G SA+F+ G + + + + S+ GV+L P + Sbjct: 252 DSRFHVVSSPRLRVKDGASATFSVGNEVPVLGQVSYADNRPIQSIEYRSSGVILDVKPQI 311 Query: 323 LSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + I L I+ ++S + P+ R+ +T V G I+L GL + + Sbjct: 312 RTDN-IDLVIKQQLSSFAKTDTGVNNSPTLIKREVNTEVSAADGDIILLGGLAESKVTNA 370 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 G L K G L +S + +T+I + V+ + Sbjct: 371 DTGFSFLPK----GWL-TSSSDEKNKTDILVVLQAKKVRRASAAHAP 412 >gi|153836074|ref|ZP_01988741.1| VcsC2 [Vibrio parahaemolyticus AQ3810] gi|149750828|gb|EDM61573.1| VcsC2 [Vibrio parahaemolyticus AQ3810] Length = 487 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 49/343 (14%), Positives = 113/343 (32%), Gaps = 49/343 (14%) Query: 69 VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 V V D A D V+ P L + N+ + + L + + Sbjct: 177 VSVMDRNIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L + ++ ++ +++ G ++ + A ++ Sbjct: 235 LEEDEKSTKVQALPGTNALLIRGT---QEEVKLAKRIAA--------------------- 270 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 L+++ Q+ + + ++ + + +G + G F Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGNRGIYDIVVPPFT----------- 318 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + F AL R++ E L A+ Q + F + S Sbjct: 319 -----ETKDFVKNFQALYSNGIARSVYETNLVALENQQSQFGKKQTATLTLI--SDKQVK 371 Query: 307 VTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + L+ T +L G++ ++ E + ++ P + ++ V + Sbjct: 372 TEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDEDDNEDSNRPPRVSSQSLNSEVYIQP 431 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 T++L G QQ + G+P++S IP+LG LF+ + ++ + Sbjct: 432 NQTVILGGFDNTVTQQQESGVPIISSIPLLGELFKYTSESKHK 474 >gi|148826860|ref|YP_001291613.1| putative phage-like secreted protein [Haemophilus influenzae PittGG] gi|148718102|gb|ABQ99229.1| putative phage-related secreted protein [Haemophilus influenzae PittGG] Length = 377 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 53/311 (17%), Positives = 108/311 (34%), Gaps = 25/311 (8%) Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + + +AH+E ++ + +S + + DT L ++ + + A + Sbjct: 82 IKVYEKKGVVYLAHIESQPKKVMKNSFVYSPIYRDTEYLSQFLKDEEGAVSASGDKLVYY 141 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 ++ S K V ++ + V + + EV+ + + G Sbjct: 142 GKTEDIARVKSVLKGV----DVPSRE-VVVTGYVFEVQTEEKEGSGINLLAK-------- 188 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + G + ++ ++ + + ++ + ++ PTL SG +F+ Sbjct: 189 -LLSGKLGINIGVKQNYENFITVNTGNLDAMIELFRTDSRFHVVSSPTLRVKSGSKGNFS 247 Query: 289 SGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 G S+ GV+ PT + I L+I ++S V Sbjct: 248 VGSDVPVLGAVTYDRDGRAVQSIEYRSSGVIFDIQPT-IKNNAIDLKINQQLSNFVKTDT 306 Query: 345 A-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P+ R T V L SG +VL GL ++ I + + G L K G L Sbjct: 307 GVNQSPTLIKRDIVTDVTLKSGDIVVLGGLAENKITEGETGFSFLPK----GIL-SGRSK 361 Query: 404 NREETEIFIAA 414 + +T+I I Sbjct: 362 SNSKTDIVILL 372 >gi|330944277|gb|EGH46345.1| type II and III secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 492 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196 +T +L + ++ +LS S + N N A QV Sbjct: 194 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLANVETYLAKTNHAITQQV 253 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255 V + E Q+ + +S + +S G++D + Sbjct: 254 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 313 Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 ++ A+ I + P++T ++ Q A G Y + SV + Sbjct: 314 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 373 Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G + P ++ I + + ++ +P+Y + Sbjct: 374 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 433 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V+L SG T++L+G +++ + I P L + ++ + + TP Sbjct: 434 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 489 Query: 418 L 418 + Sbjct: 490 V 490 >gi|33864362|ref|NP_895922.1| general (type II) secretion pathway protein D precursor [Prochlorococcus marinus str. MIT 9313] gi|33641142|emb|CAE22272.1| possible general (type II) secretion pathway protein D precursor [Prochlorococcus marinus str. MIT 9313] Length = 774 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 24/230 (10%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G + G A+ + + +F L A ++ + +A Sbjct: 519 GSVATNGGRGPIVYDVTTAESSTTSAAATRTPNPALNYPDQAFYDFLRAQIISSNTKVMA 578 Query: 274 EPTLT------AISGQSASFTSGGQHLYKTVSSSTGATSVT-----------THDYGVVL 316 PTL +ISG+ + + T V + G+ L Sbjct: 579 SPTLILSESPESISGEIGRSKANEAQVSIGDKIITSYKIVQDANGNAYCEAGFDNAGLTL 638 Query: 317 H-FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT------VELPSGGTIV 369 + G + ++ ++S V + VR ++ V + G T++ Sbjct: 639 GAMVSKIDDNGFVTFTLEPDLSAVVGQPISTGGKCGDVRTVNSRRLETGAVRVRDGQTLI 698 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G++ D ++ P+L IP++G FR+S +R++ E+ I TP ++ Sbjct: 699 LTGVISDSDTEVVTKWPILGDIPLIGQFFRSSSGSRKKNELVIMVTPRII 748 >gi|146343920|ref|YP_001201776.1| putative type II and type III secretion system pilus protein [Pseudomonas fluorescens SBW25] gi|146187732|emb|CAM96060.1| putative type II and type III secretion system pilus protein [Pseudomonas fluorescens SBW25] Length = 550 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 96/294 (32%), Gaps = 19/294 (6%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 ++ G+ + + + + +G + + V ++V +V Sbjct: 254 MIGGLGDSEEAPAYIEGIRSVGIVTAGGKPSKMKVLDRYLKRAIEESTKVVNVQVEAYDV 313 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF---SVKGVLDRFSFETVLHA 262 KQ G ++ +S+ +F F + + ++ Sbjct: 314 LLTDGKQKGIDWNLLVNSTVSGNPLGLNFFNTSPKSDDPFWNVQGTYTSSKVTASALVKF 373 Query: 263 LERATAIRTLAEPTLTAISGQSA--------SFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 LE+ + +P +T +G A ++ + + T + GV Sbjct: 374 LEQYGRVELKDQPNITVRNGVPAQIYAGEELTYIVDVEQSQDESGNVTVTPKLGRLKVGV 433 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVELPSGGTI 368 L T VL ++ + + +S + P +++ T + SG ++ Sbjct: 434 TLSVTVRVLDNDQLLVDVWPVISNLNDPDTINIGDYSFNTPRVNLKEFSTQLITSSGQSV 493 Query: 369 VLAGLLKDDIQQLKEGIPL--LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L GL+ + + +P L IL L + + E E+ + TP LV+ Sbjct: 494 HLGGLITKRMNEAMRQLPWQNLVTKAILNPLTQGINNSLERRELVLVVTPTLVQ 547 >gi|213972108|ref|ZP_03400200.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato T1] gi|302061568|ref|ZP_07253109.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato K40] gi|302131100|ref|ZP_07257090.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923146|gb|EEB56749.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato T1] Length = 578 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 77/245 (31%), Gaps = 23/245 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV V + E Q+ S S + +S G++D Sbjct: 336 TQQVLFNVKVFEATLTDTDQLALNWSAVYKSLSTKWGLSLSNSVPGISSSAISGSVGIVD 395 Query: 253 RFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + ++ A+ I + P++T ++ Q A G Y + SV Sbjct: 396 TANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASV 455 Query: 308 TTHDY--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRV 353 + G + P ++ I + + ++ +P+Y Sbjct: 456 GSSTAITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPFTSNGSSVQIPNYDA 515 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + V+L SG T++L+G D++ + I P L ++ + + Sbjct: 516 KSLSPKVKLRSGQTLILSGF--DELSDNTDKI-GTGS-PGFFGLGGGRTRMSSQSFLVVL 571 Query: 414 ATPFL 418 TP + Sbjct: 572 ITPIV 576 >gi|167947039|ref|ZP_02534113.1| Type II secretory pathway component PulD-like protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 290 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 85/227 (37%), Gaps = 25/227 (11%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +ET + + ++ + + + QV ++VTIAEV Q G S+ GS Sbjct: 65 AETGMIAVRTTAKKHQEIERFLTQVLDSARRQVLIEVTIAEVVLSDHFQAGVDWSLIGSD 124 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + + + ++ G ++ L ALE ++ L+ P + ++ Q Sbjct: 125 IGINSAMIGQ--NLLQAPLASLTLSGNINGDPLNLTLKALENFGKVKVLSSPKIMTLNNQ 182 Query: 284 SASFTSGGQHLY------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 A Q +Y + T T+V T G+VL TP V + L Sbjct: 183 PAVLRVTDQRVYMITDVEVEEDQETKTKTRTFETTVNTVPEGLVLTVTPYVDQFDTVMLN 242 Query: 332 IQTEVS-----------EPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 I+ +S E +P ++R+ +T + + SG + Sbjct: 243 IRPTISRILGFVEMRNQELDEANVINRVPQIQLREMETVLRVSSGDS 289 >gi|253990944|ref|YP_003042300.1| type III secretion system EscC protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782394|emb|CAQ85558.1| Putative type III secretion system EscC protein [Photorhabdus asymbiotica] Length = 491 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 92/267 (34%), Gaps = 12/267 (4%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---NLLNIAG-EDQVTLKVTIAEVR 206 V + +RA ++ + + +S +V+ N L + G ++TL IA + Sbjct: 214 VNDGEMLERAYKVKLNEGDKQKLEEAEKTSKVQVIPGTNALLVRGTPGEITLAKRIASMI 273 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALER 265 KQ+ F + ++ ++ F AD S G D F A+ Sbjct: 274 DVKGKQLMFSLKVYDVAADRTEHFGADSSMLNGSTGIYDILTLPYSATKDFLNNFQAMYS 333 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R++ L + F V S + L+ T VL Sbjct: 334 NGLARSVYSTNLLILENHQGHFGKKDTITVNLV--SNKEVESLKIEADNSLYVTGRVLPS 391 Query: 326 GRIG-----LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 G + + + + P + + + TI+L G + Sbjct: 392 GGVQAKLEYIEEHFDDDKSSNQNGVSQPPKISSQSLSSEAFIKPNETIILGGFDNIETLS 451 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREE 407 + G+P+LS IP+LG +F+N++ + + Sbjct: 452 SESGVPVLSSIPLLGEIFKNTKLTKRK 478 >gi|237801977|ref|ZP_04590438.1| type II and III secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024835|gb|EGI04891.1| type II and III secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 300 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196 +T +L + ++ +LS S + N N A QV Sbjct: 2 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLANVETYLAKTNHAITQQV 61 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255 V + E Q+ + +S + +S G++D + Sbjct: 62 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 121 Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 ++ A+ I + P++T ++ Q A G Y + SV + Sbjct: 122 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 181 Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G + P ++ I + + ++ +P+Y + Sbjct: 182 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 241 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V+L SG T++L+G +++ + I P L + ++ + + TP Sbjct: 242 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 297 Query: 418 L 418 + Sbjct: 298 V 298 >gi|91775810|ref|YP_545566.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91709797|gb|ABE49725.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 395 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 103/274 (37%), Gaps = 27/274 (9%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTIAEV 205 R ++ ++ + + + + + ++L ++V +K I EV Sbjct: 133 RDQKEIGDLLKFAGAEVQAITDDVVFYRADESKQDMLKTILADLDRPANEVVVKAYIYEV 192 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + ++ + S G + G S + L + + ++ A + Sbjct: 193 TNTVRD---------LNAISAAVSLLNSRLGITIENGATQSNQLKLSLPNIDVLISAFDS 243 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPT 321 + ++ P+L +G+++ F+ G + ++ S+ GV+L TP Sbjct: 244 DNRFKQVSAPSLRVKNGKNSRFSVGTETPTIASTTQTNNGNPVQSIIYRPSGVILEITPK 303 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 +L+ I L I ++S P+ R+ T V G I+L GL + + + Sbjct: 304 ILAE-TIELDITQQISSFQPTTTGVNQSPTLLKREIKTVVNTRDGELILLGGLNESRLSK 362 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 ++G+ L P LF + + E+++I + Sbjct: 363 QRQGLSFL---P---RLFNANTDSDEKSDILLVM 390 >gi|325529582|gb|EGD06465.1| Type II secretory pathway, component PulD [Burkholderia sp. TJI49] Length = 397 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 113/310 (36%), Gaps = 36/310 (11%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 RD+A+L TL+ V+ V + G + S + S Sbjct: 107 YRDVAYLSETLQPLFEGR----FAVNRQVSVPGATPSPLSSPQGSAASLVSRDSDHLVFV 162 Query: 177 ANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 + + + + LL + +V ++ + EV+ TG S+G + S AA Sbjct: 163 GSKAEIEKVKLLLPQIDIAMGEVMVRGVVYEVQ-------------TGDSNGSAFSLAAS 209 Query: 234 FG---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G F + L F VL AL R +++P+L SG A+F+ G Sbjct: 210 LLKGKLNITLAGNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPSLRVRSGAEATFSVG 269 Query: 291 GQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 + S SV D GV+ + P + + L + ++S V Sbjct: 270 AEVPVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQ-VRESTVDLVVDQQLSNFVQTTTG 328 Query: 346 -GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 + P+ R+ T+V++ I+L GL ++ G+ L K LFR++ Sbjct: 329 VNNSPTLTKRQLTTSVQMRDREVILLGGLTEEKTSDNSTGLSFLPK------LFRSNTSE 382 Query: 405 REETEIFIAA 414 +EI + Sbjct: 383 ASNSEILLVI 392 >gi|294086090|ref|YP_003552850.1| type II secretion PilQ [Candidatus Puniceispirillum marinum IMCC1322] gi|292665665|gb|ADE40766.1| Type II Secretion PilQ [Candidatus Puniceispirillum marinum IMCC1322] Length = 822 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 84/249 (33%), Gaps = 20/249 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV +++ + V +D +QI + +G + S++ FG F++ Sbjct: 563 QVLIEIFMITVAKDFSRQINSAFRVLPSGGGNDVSEALLYGFGTGIAEARNSFNLNLTSP 622 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + LE R ++ PT+ G++A + + + S G + Sbjct: 623 NRELTNFFNFLETNNLARVVSSPTILVADGETAEISRVQKARVSRIEQSAGDNGTVLTNT 682 Query: 313 GVVLHFTPTVLS---------PGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVEL 362 + P L + L ++ E + + + T Sbjct: 683 VIDEFLAPFQLRISEVKINRINKTVQLEVELEDTRFAAALSSVTNETDETTDTITTKFWS 742 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPL----LSKI-PILGALFRNSRFNREETEIFIAATPF 417 G +VLAGL ++ G+P L I PI+G N N +E I P Sbjct: 743 APGDVVVLAGLTRNSETATTAGVPGTTGALGAISPIIG---GNDGINNNMSETIIFMAPT 799 Query: 418 LVKPVAMRD 426 ++ P A + Sbjct: 800 VIDPSADKQ 808 >gi|260899863|ref|ZP_05908258.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037] gi|308107338|gb|EFO44878.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037] Length = 488 Score = 99.8 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 97/289 (33%), Gaps = 11/289 (3%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184 + + + + + + RA ++ + + N + Sbjct: 189 QATFPGAQSLIAAAITNIGQFKNISDGELVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 248 Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 N L + G D+V L IA + +Q+ F + S+ ++F D S G Sbjct: 249 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKENFGVDSSWVNGSRGV 308 Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D V + F L R + E L + Q F S Sbjct: 309 YDLVVPPFTETIDFLRNFQVLASNGIARGVYETNLLVLENQQGHFGKKQT--ATIALISN 366 Query: 303 GATSVTTHDYGVVLHFT----PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 + L+ T P+ RI ++ + N+ P + ++ Sbjct: 367 RQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDEEDSDNSNRPPRVSSQSLNS 426 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 V + G TI+L G QQ + GIP+LS IP+LG LF+++ + + Sbjct: 427 EVYIKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475 >gi|327538107|gb|EGF24796.1| protein containing Type II and III secretion system domain [Rhodopirellula baltica WH47] Length = 1062 Score = 99.8 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 95/326 (29%), Gaps = 81/326 (24%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQ---VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-- 227 + ++++LL Q +T++V + +QIG + + P Sbjct: 719 VVSTTSDVHDQIVDLLESLRRLQNLQITIEVRFITLSDTFFEQIGIDFDLQFDDNAPGLP 778 Query: 228 ----------------------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 S A G + +L Sbjct: 779 GDDSGPEITIGLDGDGTPTADLDIRLDQNSGATVPFGAPDAGAISTLGFAILSDIEAYFF 838 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDY 312 L A + + + P +T GQ AS + T + + D Sbjct: 839 LQAAQGDSRTNVMQAPKVTLFDGQIASIQDQTSRPFVTSIVPVVGDFAVAQQPVIVVLDE 898 Query: 313 GVVLHFTPTVLSPGR-IGLRIQTEVSEP-------------------------------- 339 G L+ V R + L + S+ Sbjct: 899 GTRLNVQGVVSEDKRFVRLTLIPTFSQIGEVNEFTFQGNSTTRNTSNRNVDTNGDGVIDE 958 Query: 340 --------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 V P++ +TTV +P GGTI+L G+ + + + G+P LSKI Sbjct: 959 EDEQEEESVTQGTTVQQPTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKI 1018 Query: 392 PILGALFRNSRFNREETEIFIAATPF 417 P + LFRN+ RE + + TP Sbjct: 1019 PYVSRLFRNTAVGRESRSLMMMVTPR 1044 >gi|134093313|ref|YP_001098388.1| putative secretion pathway protein [Herminiimonas arsenicoxydans] gi|133737216|emb|CAL60259.1| putative bacterial secretion pathway protein [Herminiimonas arsenicoxydans] Length = 656 Score = 99.8 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 95/275 (34%), Gaps = 20/275 (7%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR--------D 208 + +E + ++ N G + + V + + + Sbjct: 306 ADNQASTAEPLAVPAAAVPVLTPAADATGN-----GPRMLLIDVVLLSTQELMATSKGIN 360 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 +L + Q +++ + G + + S+ + A ++ Sbjct: 361 LLSALTLQLGSGSTAAYSRIVTSNSLNGAKPDVSTAITRAVSIPALSYSLNI-ANANSSV 419 Query: 269 IRTLAEPTLTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 LA PTL AI G + F SG L T +G+ L TPT L Sbjct: 420 NEVLARPTLAAIEGLPSEFFSGTNLSAGLVSTSQQGGTTIVPLDKRFGIKLSVTPTFLPQ 479 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 GR+ L+I+ + + + A+ V + G T++L+GL + + Sbjct: 480 GRVQLKIEAQRTALNASSETSRVAYQIEIGELTANANVVMNLGETLLLSGLSEKTRTSTR 539 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 +G+P L +P++ LF N + N + I TP Sbjct: 540 DGVPGLQDVPVVQYLFSNKKTNDLQRSALILITPR 574 >gi|145589562|ref|YP_001156159.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047968|gb|ABP34595.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 759 Score = 99.4 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 16/244 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 ++ + + G + S+SF + S G + Sbjct: 423 PKMASIDAVLIRTIDNQSSSYGINLLTGLTMFAGSQSFRSTGSVGGSSVSGVVQNSVIGI 482 Query: 253 RFSFETVLH------------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + ++ A ++ + +A PTLTA+ ++F SG Sbjct: 483 GTATSATINSVSGLVSYSLNIANSTSSNSQVIARPTLTALDRIPSTFYSGAVITAGLNGG 542 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK----A 356 +T GV L TPT + + L ++ S + V + Sbjct: 543 GVSGAQITNIPTGVSLSVTPTFVDEESMMLAVKVSRSYVTSQNAGYGGFNASVSQDQHAV 602 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 V++ G T++L GL + L++G+P+L IPI+ F + + + + TP Sbjct: 603 TANVKIKYGETLILDGLSSRAVSGLQDGVPVLQDIPIIQYFFNQKQQQQYSENVVVLVTP 662 Query: 417 FLVK 420 V+ Sbjct: 663 RKVQ 666 >gi|218534703|ref|YP_002424465.1| PilN protein [Yersinia pseudotuberculosis] gi|218473172|emb|CAQ76600.1| PilN protein [Yersinia pseudotuberculosis] Length = 543 Score = 99.4 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 93/251 (37%), Gaps = 19/251 (7%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 +N N QV L V + V + Q+G + +S S + F S Sbjct: 297 INDRNTELNRQVVLNVKVYSVEKRRQDQLGIDWNAVFTSGSIGGSLTSAFTEASTSAMTG 356 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + ++AL + + + T + + G Q Y + ++ Sbjct: 357 GLSILDGKFANSKAFVNALAEQANVSLVTQQASTTTNMSAVPVQVGTQQDYASQVNTDST 416 Query: 305 TSV--------TTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEP------VIGVNAGDMP 349 +V +T G + P ++ +I L+ +S+ G ++ ++ Sbjct: 417 ANVGTSTSITKSTITTGFNMTMLPYIMPKSSQIQLQFSINMSDDPTSRTFTSGESSIELM 476 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R++ + V L SG T+VL+G + + K+G+ G L + +++T Sbjct: 477 KTRLKTFNQRVILSSGQTLVLSGFQQVNNTGSKQGV---GSASFFG-LGGGANGQKDDTM 532 Query: 410 IFIAATPFLVK 420 + I TP L++ Sbjct: 533 LVILITPTLLR 543 >gi|167589098|ref|ZP_02381486.1| type IV pilus biogenesis protein PilN, putative [Burkholderia ubonensis Bu] Length = 419 Score = 99.4 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 25/245 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V + G S+ + F ++ D S + Sbjct: 172 SRQVLLNVTVLSVSLNAGDAYGIDWSLVYKTMSAGFGVTNPFTPVALTSPADLSATVLSP 231 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307 F ++ AL + +R ++T ++ Q Q Y S+T +V Sbjct: 232 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVAKQTGYLASVSTTNTANVGS 291 Query: 308 ------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSY 351 T G + P VL G + L+ T +S G P Sbjct: 292 STALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKDVTSSEAKGATKIQTPDV 351 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 +R + + SG T+V++G + + G+ P + AL R I Sbjct: 352 DMRNFLQRIAMKSGETLVISGYEGTNDSLDERGV----GTPKMIALGGGYEAQRTREVIV 407 Query: 412 IAATP 416 I TP Sbjct: 408 ILITP 412 >gi|317968183|ref|ZP_07969573.1| general (type II) secretion pathway protein D precursor [Synechococcus sp. CB0205] Length = 729 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 16/206 (7%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 S + + + ++ G +V G AL A+ R A + + Q Sbjct: 516 ASPTLIINENSEPIASGAAVTVGGSGTA--------ALNTASIGRPFANESFVTVGAQEI 567 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-- 343 + +S +G + + G + + E+S + Sbjct: 568 VSYTVQAGQNGAPNSCQPEFGTAGLTFGARVS---RIDDNGFVTFSMSPEISAVIATDVR 624 Query: 344 --NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G + + R+ DT V + G T++L G++ D Q + P+L IP +G FR+ Sbjct: 625 IEGCGTVNTLTTRRLDTGEVRVRDGQTLILTGVISDYDQAVVRKWPVLGDIPFVGQFFRD 684 Query: 401 SRFNREETEIFIAATPFLVKPVAMRD 426 S RE+ E+ I +P +++ + Sbjct: 685 SINRREKRELVILVSPRIIRDDNGGN 710 >gi|289678006|ref|ZP_06498896.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. syringae FF5] Length = 305 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 48/144 (33%), Gaps = 6/144 (4%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV 336 + Q A S ++ G L TP L ++ L + E Sbjct: 1 LENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIED 58 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + I PS R T + G++V+ G + +PLL IP +G Sbjct: 59 GQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGK 118 Query: 397 -LFRNSRFNREETEIFIAATPFLV 419 LF++ + E TP L+ Sbjct: 119 LLFQSRSRELSQRERLFILTPRLI 142 >gi|172064947|ref|YP_001815659.1| type IVB pilus formation outer membrane protein [Burkholderia ambifaria MC40-6] gi|171997189|gb|ACB68106.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia ambifaria MC40-6] Length = 577 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 75/245 (30%), Gaps = 19/245 (7%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQ 216 A + + + S ++V ++ QV + VT+ V G Sbjct: 301 AGSVITSPATGSIAVTDTPDVLERVGEFMDQQNRVLARQVLINVTVLSVTLSAADSYGIN 360 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + G F + + S V+ AL + Sbjct: 361 WHAVYQALGTQFGITTAFTSMIQNPSELSASVITPSSRASSTTAVIDALSTQGTVHRKTS 420 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPG 326 ++T ++ Q Q Y S+T ++ T G L P +L G Sbjct: 421 ASITTLNDQPVPVQVAEQQGYLAQISTTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDG 480 Query: 327 RIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I ++ + +S V +P+ R + + SG T+V++G Q Sbjct: 481 TIMMQFYSNISSLVNLAPFGPANQQIQLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQD 540 Query: 381 LKEGI 385 ++G+ Sbjct: 541 NRQGV 545 >gi|258545349|ref|ZP_05705583.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826] gi|258519452|gb|EEV88311.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826] Length = 111 Score = 98.3 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + + + E V+ S+ T V + +G TIVL G+ K E + Sbjct: 2 VDMELNINNDELGNNVSVAGQTSFTKNTSGVKTNVLVDNGETIVLGGVYKQRQTAKTEKV 61 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 PLL IP++G F+ + E+ E+ I TP +V Sbjct: 62 PLLGDIPVIGNAFKKNTRAFEKNEMLIFVTPRIVD 96 >gi|187736127|ref|YP_001878239.1| type II and III secretion system protein [Akkermansia muciniphila ATCC BAA-835] gi|187426179|gb|ACD05458.1| type II and III secretion system protein [Akkermansia muciniphila ATCC BAA-835] Length = 833 Score = 97.9 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 56/382 (14%), Positives = 105/382 (27%), Gaps = 122/382 (31%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFA 231 ++++ QV + T EV + L+++GF G + + Sbjct: 446 EELVAARTAEQPLQVVVSATFLEVNQTDLEELGFNWIVNLNLDPTKWFMGGAGTDKNDYN 505 Query: 232 ADFGGKFVSEGGDFSVKGVLDRF------------------------------------- 254 + G + GV+ Sbjct: 506 NSVLDSAANVAGAVAPAGVVGGLRSGNQVFTEDSIDSMIERGTSARSSDATYVPGGAPSI 565 Query: 255 ----------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ L + + P++ G+ A+F SG + +Y T Sbjct: 566 VTLRGMWSHADITMIMRGLSQKKGTDIMQHPSVIVRPGEKATFFSGRELIYPTEYDPPEV 625 Query: 305 TS------------------------------VTTHDYGVVLHFTPTVLSPGR--IGLRI 332 + T G + + T +S + + + + Sbjct: 626 PNSTGNNNDWGDNDNNGGGIPVMPMTPAHPSAFETRQLGTIFNVEVTGISDDKSIVEMTV 685 Query: 333 QTEVSEPVIGVNAGD----------------------------MPSYRVRKADTTVELPS 364 E+ + +N G P + R+ V + + Sbjct: 686 VPEIVDFDGFINYGTSLFVPMVSQEKDAKEEVVMVKTSDNFILQPVFSTRRLTAPVRIAT 745 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP--- 421 G T+V+ L K ++ IP+L IP +G LFR+ + I I +V P Sbjct: 746 GNTLVIGALKKSTSITYEDKIPVLGDIPWVGRLFRSKGSKEQRKAIIIMVKAEVVDPGGK 805 Query: 422 -VAMRDLSRPDDHYSVEDDAKA 442 + D S PDD DA Sbjct: 806 KLYTPDTSIPDDEV-PAGDASL 826 >gi|170698379|ref|ZP_02889453.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia ambifaria IOP40-10] gi|170136718|gb|EDT04972.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia ambifaria IOP40-10] Length = 577 Score = 97.9 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 74/245 (30%), Gaps = 19/245 (7%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQ 216 A + + + S ++V + QV + VT+ V G Sbjct: 301 AGSVITSPATGSIAVTDTPDVLERVGEFMEQQNRVLARQVLINVTVLSVTLSAADSYGIN 360 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + G F + + S V+ AL + Sbjct: 361 WHAVYQALGTQFGITTAFTSMIQNPSELSASVITPSSRASSTTAVIDALSTQGTVHRKTS 420 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPG 326 ++T ++ Q Q Y S+T ++ T G L P +L G Sbjct: 421 ASITTLNDQPVPVQVAEQQGYLAQISTTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDG 480 Query: 327 RIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I ++ + +S V +P+ R + + SG T+V++G Q Sbjct: 481 TIMMQFYSNISSLVNLVPFGPANQQIQLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQD 540 Query: 381 LKEGI 385 ++G+ Sbjct: 541 NRQGV 545 >gi|167840260|ref|ZP_02466944.1| type IV pilus biogenesis protein PilN, putative [Burkholderia thailandensis MSMB43] Length = 423 Score = 97.9 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G S+ + + F ++ D S + Sbjct: 175 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTNPADLSATVLSP 234 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307 F ++ AL + +R ++T ++ Q Q Y S+T +V Sbjct: 235 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 294 Query: 308 ------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPS 350 T G + P VL G + L+ T +S G P Sbjct: 295 STALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVSSSTGGSGAARIQTPD 354 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 355 VDMRNFLQRVAMKSGETLVISGYEGTNDSLDERGV----GTPKMIALGGGYEAQRAREVI 410 Query: 411 FIAATP 416 I TP Sbjct: 411 VILITP 416 >gi|15667831|gb|AAL05518.1|AF399919_5 PilN [Escherichia coli] Length = 539 Score = 97.9 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 19/242 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L V I +R+ +Q G + S S + F Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDAITGGVSIVDGK 361 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 + L AL + + + + + Q Y ++ +V Sbjct: 362 LTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421 Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 T G + P +L + + L + + G + +P+ ++ + Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TV+L SG T++++G + + K+G+ P L S + TP Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGSTVKTATPFSVVLITPN 537 Query: 418 LV 419 ++ Sbjct: 538 II 539 >gi|167838357|ref|ZP_02465216.1| putative bacteriophage-related lipoprotein [Burkholderia thailandensis MSMB43] Length = 420 Score = 97.9 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 22/230 (9%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 +V ++ + EV S+ + + + + Sbjct: 202 TAPGEVVVRGWVYEVANTDSAN---------SAWSIAVRLLSGQLRLSSGDTSSDASAMR 252 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGAT 305 + + AL + + ++ P + +SG+ G Q + SS T Sbjct: 253 FTGPGVDAAISALNADSRFKVVSSPHVRIVSGEHVRLNVGQQVPTQSSVSYQGSSGTPVQ 312 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364 S+T D G++ PTV+ I L+++ E+S+ V P+ R+ T L Sbjct: 313 SITYQDAGLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLRD 371 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G +VL GL++D + G L P + F +++ TE+ + Sbjct: 372 GELVVLGGLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 415 >gi|115360623|ref|YP_777760.1| type IVB pilus formation outer membrane protein [Burkholderia ambifaria AMMD] gi|115285951|gb|ABI91426.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia ambifaria AMMD] Length = 577 Score = 97.5 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 74/245 (30%), Gaps = 19/245 (7%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQ 216 A + + + S ++V + QV + VT+ V G Sbjct: 301 AGSVITSPATGSIAVTDTPDVLERVGEFMEQQNRVLARQVLINVTVLSVTLSAADSYGIN 360 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + G F + + S V+ AL + Sbjct: 361 WHAVYQALGTQFGITTAFTSMIQNPSELSASVITPSSRASSTTAVIDALSTQGTVHRKTS 420 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPG 326 ++T ++ Q Q Y S+T ++ T G L P +L G Sbjct: 421 ASITTLNDQPVPVQVAEQQGYLAQISTTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDG 480 Query: 327 RIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I ++ + +S V +P+ R + + SG T+V++G Q Sbjct: 481 TIMMQFYSNISSLVNLVPFGPANQQIQLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQD 540 Query: 381 LKEGI 385 ++G+ Sbjct: 541 NRQGV 545 >gi|329847987|ref|ZP_08263015.1| bacterial type II and III secretion system family protein [Asticcacaulis biprosthecum C19] gi|328843050|gb|EGF92619.1| bacterial type II and III secretion system family protein [Asticcacaulis biprosthecum C19] Length = 545 Score = 97.5 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 94/274 (34%), Gaps = 6/274 (2%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 E + + ++ V + + DQ+++ V I + IG Sbjct: 213 EAAAPMHVRISDLVRTEDAATPVSDGPEVPVAPDQISVDVAIILSQTSQRDSIGINLLDG 272 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTA 279 ++ +S G + +V + ++ R + +A P LTA Sbjct: 273 LTAQYGLQSQRTTTGDAQGNRNMQRTVTEAISIPQLTYNMNLFNRFGQYYQVVARPMLTA 332 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 G+ A F G K + + + T D G + TP ++ LRI+ S Sbjct: 333 YRGEPADFFVGRS--AKVAVTGVNFSQLETIDIGTQIKVTPVEITATGTRLRIEVTRSFL 390 Query: 340 VIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 S + TTVE+ G T++L+GL + PL+ +P++G+ Sbjct: 391 SGEPAGNFNESLNTWRQTVSTTVEVAFGTTLILSGLSESVRDSSTTKTPLVGDVPVVGSA 450 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 F + + + TP A +RP Sbjct: 451 FNRRITTDKRDAVLVLVTPSPSMAFAGPQWARPA 484 >gi|254262815|ref|ZP_04953680.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 1710a] gi|254213817|gb|EET03202.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 1710a] Length = 589 Score = 97.5 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S ++V + QV L VT+ V G ++ Sbjct: 309 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 368 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277 + F ++ D S + F ++ AL + +R ++ Sbjct: 369 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 428 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329 T ++ Q Q Y S+T +V + G + P VL G + Sbjct: 429 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 488 Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 L+ T +S E + P +R V + SG T+V++G + Sbjct: 489 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 548 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ P + AL R I I TP Sbjct: 549 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 582 >gi|269469298|gb|EEZ80806.1| Type II secretory component HofQ [uncultured SUP05 cluster bacterium] Length = 85 Score = 97.5 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%) Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 + P+ R+ TT+ + +V+ G+ +P +P++G LF + + Sbjct: 11 SNTAPAINKREITTTLLVKDNTIVVIGGVFTQTTVDATNKVPFFGDLPLIGGLFSYKKDS 70 Query: 405 REETEIFIAATPFLV 419 E+ I P ++ Sbjct: 71 DVRKELLIFLAPRII 85 >gi|281355619|ref|ZP_06242113.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281318499|gb|EFB02519.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 540 Score = 97.5 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 74/464 (15%), Positives = 144/464 (31%), Gaps = 89/464 (19%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 + + V + P+ A + ++ R + + A DG ++ D L Sbjct: 101 NAKRVDQNQPSVAALKFNNGRKLLIV-----SAEACRFEDDGYGESIDKLVERLDQPGLT 155 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 + R I ++ L MV E+ + + N Sbjct: 156 ASSGRP---KFIYFPKINSAATLKKMVS---------EVGASAIDVEFDNGVDKLIVDGG 203 Query: 185 MNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +N L +A ++ + + E+ + +IG ++ G Sbjct: 204 LNALFVAAPFWSWKHISNMLAQYDRPIPEIRFRYKVVEIFAENDDKIGLDFQSWKNNDGA 263 Query: 227 SK---------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 ++A+ FG + G + + + L R L L Sbjct: 264 DFFSAGGRFRSNWASTFGAGVNNSGSSKTEFFNFNPKWNSKYIDFLTSRGKARVLTSGVL 323 Query: 278 TAISGQSASFTSGGQHLYKTVSSS----------------------------TGATSVTT 309 A + + S G Y VS G +T Sbjct: 324 NAKNRTTTSINVGSGLFYDDVSQKIEPGNTGRLPAPFAGEPDVPDAGKLEIRKGQQQITK 383 Query: 310 HDYGV--VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSGG 366 G L +++ L++ E S +IG ++ P + +T V++ SG Sbjct: 384 VGEGFRFSLDLVEPIVTANSTTLKLHAE-SVSLIGWDSSGEPRLNKSEIETEVQIGNSGK 442 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 V+ GL K DI + G+PLL +P+LG LF + ++++I I A + Sbjct: 443 NFVIGGLRKFDIVRGVAGVPLLKDLPLLGWLFSTESESTKKSQIVIL---------ASAE 493 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 S P D + +A ++ + + + ++ G Sbjct: 494 YSTPFDPV--PTEIQANV-GKIVEDVRAGVRNPLNNLGFE-QYG 533 >gi|190570911|ref|YP_001975269.1| type II secretion system protein, putative [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357183|emb|CAQ54599.1| type II secretion system protein, putative [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 488 Score = 97.5 bits (241), Expect = 5e-18, Method: Composition-based stats. Identities = 56/430 (13%), Positives = 127/430 (29%), Gaps = 100/430 (23%) Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 I + V V+D+L+ ++ S + + K G + L + +++ Sbjct: 76 SINVDEKVPVKDLLI------EIGKLSDINLDIDPKISGNITLKLKDKNINEVIQNIANS 129 Query: 117 ---ERDIAHLEMTLRRFIADSN------IRV-EMVSDTVVLHGMVRTIQDSQRAVEL--- 163 + + + + + + + I + V+ G V + + + Sbjct: 130 AKLRYSMNNGVIRIEQDLPYAQNYYVDFINIQHSAQSNFVVSGNVTSSDADRNVRKSQYS 189 Query: 164 -----------------------------SETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 E + + + + ++ +N + Sbjct: 190 SDLWSSLEKGLNAIMDVNGVDDGEFLSSNREAGVIILNARKDIHKAVEEYINKVKKLASS 249 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ I EV D G + + + + + S+ ++ Sbjct: 250 QVMIEAKIVEVVLDDKYLSGINLNDLHNKTKSITNQDS-------------SITSLVMNS 296 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TS 306 E ++ L++ ++ P + AI+ Q A + H+Y T T Sbjct: 297 DLENLVKTLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSDIQKDTGNSNHALITK 356 Query: 307 VTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---------------GDMPS 350 + + GVVL P++ I + I +S D+P Sbjct: 357 MNSTPIGVVLIIHPSINIDTNEIFMDIHPTLSRINNYTKDPNIEYVAQQNKMKLNSDIPI 416 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET-E 409 R+ +T+++ SG +V+ GL++ L +T E Sbjct: 417 IETREMHSTLKIKSGEVMVIGGLIEHRKDNQ--------------NLLHQKSKKLAKTVE 462 Query: 410 IFIAATPFLV 419 I +V Sbjct: 463 TVIFLKATIV 472 >gi|270487709|ref|ZP_06204783.1| conserved domain protein [Yersinia pestis KIM D27] gi|270336213|gb|EFA46990.1| conserved domain protein [Yersinia pestis KIM D27] Length = 171 Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 49/136 (36%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 K+I + + I++V ++ V VS AD + ++ ++ K G A Sbjct: 10 FENSANAKQIYLPIGGSHIIKVQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 69 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + + + +L+ I +R DS I + + ++ +L G T + Sbjct: 70 LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 129 Query: 161 VELSETFLSQSGRNQY 176 + + + Sbjct: 130 ASIVGEATASKKEKRE 145 >gi|226198442|ref|ZP_03794010.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei Pakistan 9] gi|225929499|gb|EEH25518.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei Pakistan 9] Length = 590 Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S ++V + QV L VT+ V G ++ Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277 + F ++ D S + F ++ AL + +R ++ Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329 T ++ Q Q Y S+T +V + G + P VL G + Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489 Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 L+ T +S E + P +R V + SG T+V++G + Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ P + AL R I I TP Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583 >gi|254194313|ref|ZP_04900745.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei S13] gi|254301386|ref|ZP_04968830.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 406e] gi|157811498|gb|EDO88668.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 406e] gi|169651064|gb|EDS83757.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei S13] Length = 590 Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S ++V + QV L VT+ V G ++ Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277 + F ++ D S + F ++ AL + +R ++ Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329 T ++ Q Q Y S+T +V + G + P VL G + Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489 Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 L+ T +S E + P +R V + SG T+V++G + Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ P + AL R I I TP Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583 >gi|254186932|ref|ZP_04893448.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei Pasteur 52237] gi|157934616|gb|EDO90286.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei Pasteur 52237] Length = 590 Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S ++V + QV L VT+ V G ++ Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277 + F ++ D S + F ++ AL + +R ++ Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329 T ++ Q Q Y S+T +V + G + P VL G + Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489 Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 L+ T +S E + P +R V + SG T+V++G + Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ P + AL R I I TP Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583 >gi|53722623|ref|YP_111608.1| type IV pilus biosynthesis protein [Burkholderia pseudomallei K96243] gi|52213037|emb|CAH39075.1| putative type IV pilus biosynthesis protein [Burkholderia pseudomallei K96243] Length = 589 Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S ++V + QV L VT+ V G ++ Sbjct: 309 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 368 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277 + F ++ D S + F ++ AL + +R ++ Sbjct: 369 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 428 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329 T ++ Q Q Y S+T +V + G + P VL G + Sbjct: 429 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 488 Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 L+ T +S E + P +R V + SG T+V++G + Sbjct: 489 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 548 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ P + AL R I I TP Sbjct: 549 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 582 >gi|53716205|ref|YP_106188.1| putative type IV pilus biogenesis protein PilN [Burkholderia mallei ATCC 23344] gi|124381791|ref|YP_001025775.1| type IVB pilus formation outer membrane protein [Burkholderia mallei NCTC 10229] gi|126447055|ref|YP_001077859.1| type IVB pilus formation outer membrane protein [Burkholderia mallei NCTC 10247] gi|126457943|ref|YP_001076206.1| type IVB pilus formation outer membrane protein [Burkholderia pseudomallei 1106a] gi|167003979|ref|ZP_02269757.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei PRL-20] gi|237509279|ref|ZP_04521994.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei MSHR346] gi|242311526|ref|ZP_04810543.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 1106b] gi|254205031|ref|ZP_04911384.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei JHU] gi|254359153|ref|ZP_04975425.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei 2002721280] gi|52422175|gb|AAU45745.1| putative type IV pilus biogenesis protein PilN [Burkholderia mallei ATCC 23344] gi|126231711|gb|ABN95124.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 1106a] gi|126239909|gb|ABO03021.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei NCTC 10247] gi|147754617|gb|EDK61681.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei JHU] gi|148028340|gb|EDK86300.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei 2002721280] gi|235001484|gb|EEP50908.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei MSHR346] gi|242134765|gb|EES21168.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 1106b] gi|243060570|gb|EES42756.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei PRL-20] gi|261826504|gb|ABM99280.2| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei NCTC 10229] Length = 590 Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S ++V + QV L VT+ V G ++ Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277 + F ++ D S + F ++ AL + +R ++ Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329 T ++ Q Q Y S+T +V + G + P VL G + Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489 Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 L+ T +S E + P +R V + SG T+V++G + Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ P + AL R I I TP Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583 >gi|134282150|ref|ZP_01768856.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 305] gi|134246679|gb|EBA46767.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 305] Length = 589 Score = 97.1 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S ++V + QV L VT+ V G ++ Sbjct: 309 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 368 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277 + F ++ D S + F ++ AL + +R ++ Sbjct: 369 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 428 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329 T ++ Q Q Y S+T +V + G + P VL G + Sbjct: 429 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 488 Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 L+ T +S E + P +R V + SG T+V++G + Sbjct: 489 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 548 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ P + AL R I I TP Sbjct: 549 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 582 >gi|126443441|ref|YP_001063251.1| type IVB pilus formation outer membrane protein [Burkholderia pseudomallei 668] gi|126222932|gb|ABN86437.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 668] Length = 590 Score = 97.1 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S ++V + QV L VT+ V G ++ Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277 + F ++ D S + F ++ AL + +R ++ Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329 T ++ Q Q Y S+T +V + G + P VL G + Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489 Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 L+ T +S E + P +R V + SG T+V++G + Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ P + AL R I I TP Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583 >gi|53720957|ref|YP_109943.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei K96243] gi|52211371|emb|CAH37360.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei K96243] Length = 458 Score = 97.1 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 22/230 (9%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 +V ++ + EV S+ + + + + Sbjct: 240 TAPGEVVVRGWVYEVANTDSAN---------SAWSIAVRLLSGQLRLSSGDTSSDASAMR 290 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGAT 305 + + AL + + ++ P + +SG+ G Q + SS T Sbjct: 291 FTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQ 350 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364 S+T D G++ PTV+ I L+++ E+S+ V P+ R+ T L Sbjct: 351 SITYQDAGLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKD 409 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G +VL GL++D + G L P + F +++ TE+ + Sbjct: 410 GELVVLGGLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 453 >gi|254253693|ref|ZP_04947010.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] gi|124898338|gb|EAY70181.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] Length = 578 Score = 96.7 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 72/245 (29%), Gaps = 19/245 (7%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQ 216 + + + S ++V + QV + VT+ V G Sbjct: 302 VGSVVTSPATGSISVTDTPDVLERVGEFMEQQNRVLARQVLINVTVLSVTLSAQDSYGIN 361 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + G F + + S ++ AL + Sbjct: 362 WHAVYQALGTQFGITTAFTSMIQNPSELSATVITPSSRASSTTAIIDALSTQGTVHRKTS 421 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPG 326 ++T ++ Q Q Y S+T ++ T G L P +L G Sbjct: 422 ASITTLNDQPVPVQVAEQQGYLAQISTTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDG 481 Query: 327 RIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I ++ + +S V +P+ R + + SG T+V++G Sbjct: 482 TIMMQFYSNISSLVNLVPFGPANQQIQLPTVDTRNFLQRIAVKSGQTLVISGYEGITDLD 541 Query: 381 LKEGI 385 ++G+ Sbjct: 542 NRQGV 546 >gi|167573379|ref|ZP_02366253.1| type IV pilus biogenesis protein PilN, putative [Burkholderia oklahomensis C6786] Length = 411 Score = 96.7 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 86/277 (31%), Gaps = 28/277 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLL---NIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S ++V + N A QV L VT+ V G S+ Sbjct: 132 VASPATGSISVTDTPDVLERVAAFMAQQNRALSRQVLLNVTVLSVSLSAGDAYGIDWSLV 191 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277 + F ++ + S + F ++ AL + +R ++ Sbjct: 192 YHTLSAKFGIVNAFKPVSLTPTAELSATVLSPTSRFNGTSLLIRALSQQGQVRRKTSASV 251 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329 ++ Q Q Y S+T +V + G + P VL G + Sbjct: 252 MTLNNQPVPVQVATQVGYLASVSTTNTANVGSSTALTPGSVTTGFNMTLLPHVLDDGTVM 311 Query: 330 LRIQTEVSEP----------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 L+ T +S G P +R V + SG T+V++G + Sbjct: 312 LQFSTNISSLLALKNVASSTGGGAMQIQTPDIDMRNFLQRVAMKSGETLVISGYEGTNDS 371 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ P + AL R I I TP Sbjct: 372 LDERGV----GAPKMIALGGGYEAQRAREVIVILITP 404 >gi|134283528|ref|ZP_01770228.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei 305] gi|134245277|gb|EBA45371.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei 305] Length = 447 Score = 96.7 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 22/230 (9%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 +V ++ + EV S+ + + + + Sbjct: 229 TAPGEVVVRGWVYEVANTDSAN---------SAWSIAVRLLSGQLRLSSGDTSSDASAMR 279 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGAT 305 + + AL + + ++ P + +SG+ G Q + SS T Sbjct: 280 FTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQ 339 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364 S+T D G++ PTV+ I L+++ E+S+ V P+ R+ T L Sbjct: 340 SITYQDAGLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKD 398 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G +VL GL++D + G L P + F +++ TE+ + Sbjct: 399 GELVVLGGLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 442 >gi|157159048|ref|YP_001462784.1| type II/III secretion system protein [Escherichia coli E24377A] gi|157081078|gb|ABV20786.1| type II/III secretion system protein [Escherichia coli E24377A] Length = 406 Score = 96.7 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 61/319 (19%), Positives = 108/319 (33%), Gaps = 19/319 (5%) Query: 112 LDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 +D + A E L+ + R VE + + G + Q + +T+ + Sbjct: 96 VDYIYSHTPAAPEEPLKSLVYTPRYRTVEYLHQALSGLGQLPAAQQPVQGANGEQTWQAV 155 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQV-----TLKVTIAEVRRDILKQIGFQHS-ITGSSS 224 S ++ ++S + + V + V EV Q S GS Sbjct: 156 SSGTRFISASGDVFVFRGTAREVELVRQLLPQIDVRAQEVSV-AGYVFEVQTSERNGSGL 214 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + + +S L S + + + + ++ P L ISG+ Sbjct: 215 ALAAELLSGRFSITMSSASGLDNFIRLSTGSVDAMYELFRTDSRFQVVSSPRLRVISGKE 274 Query: 285 ASFTSGGQHLYKTVSSST---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A F+ G + S SV G + PTV IGL I ++S Sbjct: 275 AVFSVGSDVPVLSSVSWQDKVPVQSVEYRSSGAIFRVKPTVTQD-VIGLDIVQQLSNFAK 333 Query: 342 GVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + P+ R+ T+V L G IVL GL ++ + + G+ L + F + Sbjct: 334 TDTGVNNTPTLIKREVSTSVSLNDGDIIVLGGLAENKTSKARTGLSFLPDV------FGS 387 Query: 401 SRFNREETEIFIAATPFLV 419 R +T+I + V Sbjct: 388 DSDERAKTDIIVVLQARRV 406 >gi|257142072|ref|ZP_05590334.1| type IV pilus biogenesis protein PilN, putative [Burkholderia thailandensis E264] Length = 586 Score = 96.7 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G S+ + + F +++ D S + Sbjct: 338 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTKPADLSATVLSP 397 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 398 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 457 Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----------GVNAGDMPS 350 G + P VL G + L+ T +S + P Sbjct: 458 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSSTGGRSAARIQTPD 517 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 518 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 573 Query: 411 FIAATP 416 I TP Sbjct: 574 VILITP 579 >gi|113955379|ref|YP_731905.1| general secretion pathway protein D [Synechococcus sp. CC9311] gi|113882730|gb|ABI47688.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. CC9311] Length = 732 Score = 96.7 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 7/163 (4%) Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 AL+ AT R+ A + + Q S +S +G + Sbjct: 545 SALQTATIGRSKANESFVTVGTQETVNYSVSAGQNGAPNSCQPILGTAGLTFGARVS--- 601 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADT-TVELPSGGTIVLAGLLKD 376 + G + + ++ N VR+ DT ++ + G T++L G++ D Sbjct: 602 KIDDNGFVSFSLSPTIAAVTGTQNVEGCGPRSILSVRRLDTGSLRVRDGQTLILTGVISD 661 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 Q P+L +P++G FR S +R + E+ + TP ++ Sbjct: 662 RDAQQVRKWPILGDLPLIGQFFRESTRDRAKRELVVLVTPKII 704 >gi|167817938|ref|ZP_02449618.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei 91] Length = 403 Score = 96.3 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 22/230 (9%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 +V ++ + EV S+ + + + + Sbjct: 185 TAPGEVVVRGWVYEVANTDSAN---------SAWSIAVRLLSGQLRLSSGDTSSDASAMR 235 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGAT 305 + + AL + + ++ P + +SG+ G Q + SS T Sbjct: 236 FTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQ 295 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364 S+T D G++ PTV+ I L+++ E+S+ V P+ R+ T L Sbjct: 296 SITYQDAGLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKD 354 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G +VL GL++D + G L P + F +++ TE+ + Sbjct: 355 GELVVLGGLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 398 >gi|167566274|ref|ZP_02359190.1| type IV pilus biogenesis protein PilN, putative [Burkholderia oklahomensis EO147] Length = 409 Score = 96.3 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 77/245 (31%), Gaps = 25/245 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G S+ + F ++ + S + Sbjct: 162 SRQVLLNVTVLSVSLSAGDAYGIDWSLVYHTLSAKFGIVNAFKPVSLTPTAELSATVLSP 221 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++ ++ Q Q Y S+T +V + Sbjct: 222 TSRFNGTSLLIRALSQQGQVRRKTSASVMTLNNQPVPVQVATQVGYLASVSTTNTANVGS 281 Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSY 351 G + P VL G + L+ T +S G P Sbjct: 282 STALTPGSVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLALKNVASSTGGGAMQIQTPDI 341 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 342 DMRNFLQRVAMKSGETLVISGYEGTNDSLDERGV----GAPKMIALGGGYEAQRAREVIV 397 Query: 412 IAATP 416 I TP Sbjct: 398 ILITP 402 >gi|313681304|ref|YP_004059042.1| type ii and iii secretion system protein [Sulfuricurvum kujiense DSM 16994] gi|313154164|gb|ADR32842.1| type II and III secretion system protein [Sulfuricurvum kujiense DSM 16994] Length = 481 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 94/240 (39%), Gaps = 19/240 (7%) Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDR 253 +++I +V +G S+ S + SF A G S G F + D Sbjct: 239 EISIYDVELKDNYALGIDWSLVPSLAKDGLSFVASATGSLGSAGASAVPLTFGMIMKNDT 298 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------AT 305 ++ + +++ALE + ++ P L ++G + T G + Y + +T +T Sbjct: 299 YNGKALVNALENFGKVESVQRPKLLGLAGTNVKLTDGVEAPYISGIQNTSVGNGTAQVST 358 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIG-----LRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + T G+ ++ +L I + + + N P + + T+ Sbjct: 359 TSATALSGLEINLKSNMLDGTVITDIGLKINDIVGYTSFEVNGNKFSQPQTVTKAINNTM 418 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G IV++GL ++ + G+P L G + + ++E+ I TP ++K Sbjct: 419 RVQPGVPIVISGLFRNKSDKGWNGLPGLGDS-AAGVVGGARHTSNTKSEMVIVVTPRVIK 477 >gi|167575154|ref|ZP_02368028.1| putative bacteriophage-related lipoprotein [Burkholderia oklahomensis C6786] Length = 446 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 91/271 (33%), Gaps = 22/271 (8%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 I + AV + + + + + +V ++ + EV Sbjct: 187 TASDIAAAPVAVGVQARGNELVIVGSHDEVAMLRKLVPELDTAPGEVVVRGWVYEVANT- 245 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 S+ + + + + + + AL + Sbjct: 246 --------GSANSAWSIAVRLLSGQLRLSSGDTASDTSAMRFTGPGVDAAISALNADSRF 297 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + ++ P + +SG+ G Q + S+ T S+T D G++ PTV+ Sbjct: 298 KVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQDAGLIFDVEPTVMR 357 Query: 325 PGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 I L+++ E+S+ V P+ R+ T L G +VL GL++D + Sbjct: 358 D-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARS 416 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G L P + F +++ TE+ + Sbjct: 417 GYSWL---P---SFFDGRSSSKQRTEVLLVL 441 >gi|254244616|ref|ZP_04937938.1| PilN [Pseudomonas aeruginosa 2192] gi|126197994|gb|EAZ62057.1| PilN [Pseudomonas aeruginosa 2192] Length = 569 Score = 96.0 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236 ++++N N + QV L V + V Q+G ++ S Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289 +S + ++ AL + + T+ P++T ++ QSA Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435 Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342 Q ST + G + P V+ G I + + G Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + G Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 550 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 551 TRNTKREVIVVLITPVVL 568 >gi|126441103|ref|YP_001059995.1| Type II secretory pathway, component PulD [Burkholderia pseudomallei 668] gi|126220596|gb|ABN84102.1| type II secretory pathway, component PulD [Burkholderia pseudomallei 668] Length = 394 Score = 95.6 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 81/226 (35%), Gaps = 20/226 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ + EV + FQ ++ S + G + L Sbjct: 178 QVAVRAWVYEVSKQEDNNSAFQLALRLLGGRVGASIGSGTIGDDSNA-------IRLRAG 230 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTT 309 FE + AL + R + P L SGQ A G +S SV Sbjct: 231 GFEAAIAALNSDSRFRVVTSPNLRVRSGQLARLNVGQSVPVVGSVSYPSASGAPVQSVQY 290 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTI 368 D GV+ PTV + I L + E+S+ V + P+ RK +++ + G + Sbjct: 291 QDAGVIFQVQPTVKAS-AIDLNVIEEISDFVRTTTGVNNSPTKNTRKLESSFSVEDGDAV 349 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 ++ GL +D L G+ L P + R N TEI + Sbjct: 350 LIGGLTQDKESHLDSGLSFL---P---SWMRGRASNSSRTEILLLL 389 >gi|281356848|ref|ZP_06243338.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316406|gb|EFB00430.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 574 Score = 95.6 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 79/298 (26%), Gaps = 68/298 (22%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------- 233 K++ ++ QV L + + EV + ++G ++ G Sbjct: 256 KMLAQYDVPIP-QVRLNIKVYEVYSENNDKMGIDFQSWKNNEGADFFSVGGRYRNNWAAA 314 Query: 234 -FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ--------- 283 GG S G + + + L L + + L + Sbjct: 315 YSGGMARSFGSERTSFYNFNPKWNTRYLDFLASKGRAKVVHTGELCVRNNTSAQLSRTTQ 374 Query: 284 ---------------SASFTSGGQHLYKTV------------------------------ 298 + + + Sbjct: 375 IFYIDTSKPVNNAIIPGTTLDPSGNPFPDTGVGPYELLSGLAGKLFDKSIDKPGKDSADL 434 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKAD 357 S G +TT G T S R ++ IG + P A Sbjct: 435 SYGKGNQQITTAFTGFGFTMTVNNASVNLEETRFNVTLNNTSLIGFASNGTPRISKGNAV 494 Query: 358 TT-VELPSG-GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 T V LP G + V+ GL K + + + G+P L IP LG LF + E+ + Sbjct: 495 TQDVSLPHGKDSFVIGGLRKQETVKSRTGVPWLMDIPYLGYLFSTESNSVRHAELIVV 552 >gi|224827067|ref|ZP_03700164.1| type II and III secretion system protein [Lutiella nitroferrum 2002] gi|224600733|gb|EEG06919.1| type II and III secretion system protein [Lutiella nitroferrum 2002] Length = 427 Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 57/309 (18%), Positives = 99/309 (32%), Gaps = 32/309 (10%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 RD+A+L LR + + V + + + + Q Sbjct: 133 YRDLAYLTELLRPLFKNGSFTV-----NRTVRAAPGNASSTPAPSGTAAALIDQKSDVMV 187 Query: 177 ANSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 ++ ++ L + +V +K + EV + GFQ ++ S Sbjct: 188 FQGTAAEIDMLKRVLPQVDTAMGEVLVKGVVYEVSTGQNEASGFQLAL---------SLL 238 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + L + + + AL + + ++ P L SG+SAS T G Sbjct: 239 GGKLGVTIGTPPKGDNAITLKTGAIDAAIGALAGDSRFKVVSTPYLRVKSGRSASLTVGQ 298 Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA- 345 T S+ GV+ + P + I L + +VS V Sbjct: 299 DVPVLGSVSYPQGGGTPVRSIEYKSSGVIFNIAPQ-VRDRTIDLEVSQQVSNFVKTETGV 357 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 D P+ R+ T V G IVL GL + + G+ L R + Sbjct: 358 DDSPTLIKRELRTHVSALDGELIVLGGLRDEKDNASRTGLSFLPD------FLRARSSSS 411 Query: 406 EETEIFIAA 414 +TEI + Sbjct: 412 NQTEILLML 420 >gi|330882527|gb|EGH16676.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 635 Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 68/214 (31%), Gaps = 15/214 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G +++ S R + + + L+ QV ++ I EV Sbjct: 417 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 475 Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G Q S T + + G + + + + L Sbjct: 476 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 535 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT------VSSSTGATSVTTHDYGV 314 ALE + L+ P+L ++ Q A G S++T +SV GV Sbjct: 536 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 595 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 +L P + G + + IQ +VS N D Sbjct: 596 ILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDA 629 >gi|91210748|ref|YP_540734.1| putative phage-related secreted protein [Escherichia coli UTI89] gi|149365806|ref|ZP_01887841.1| putative phage-related secreted protein [Yersinia pestis CA88-4125] gi|165927175|ref|ZP_02223007.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938242|ref|ZP_02226801.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. IP275] gi|165938650|ref|ZP_02227206.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. IP275] gi|167422164|ref|ZP_02313917.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167466986|ref|ZP_02331690.1| putative phage-related secreted protein [Yersinia pestis FV-1] gi|191174647|ref|ZP_03036128.1| type II/III secretion system protein [Escherichia coli F11] gi|218929372|ref|YP_002347247.1| putative phage-related secreted protein [Yersinia pestis CO92] gi|229837795|ref|ZP_04457954.1| General secretion pathway protein D [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898356|ref|ZP_04513503.1| General secretion pathway protein D [Yersinia pestis biovar Orientalis str. India 195] gi|91072322|gb|ABE07203.1| putative phage-related secreted protein [Escherichia coli UTI89] gi|115347983|emb|CAL20908.1| putative phage-related secreted protein [Yersinia pestis CO92] gi|149292219|gb|EDM42293.1| putative phage-related secreted protein [Yersinia pestis CA88-4125] gi|165913524|gb|EDR32145.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. IP275] gi|165913903|gb|EDR32521.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920843|gb|EDR38091.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. F1991016] gi|166958976|gb|EDR55997.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|190905074|gb|EDV64732.1| type II/III secretion system protein [Escherichia coli F11] gi|229688646|gb|EEO80715.1| General secretion pathway protein D [Yersinia pestis biovar Orientalis str. India 195] gi|229694161|gb|EEO84208.1| General secretion pathway protein D [Yersinia pestis biovar Orientalis str. PEXU2] Length = 414 Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 60/338 (17%), Positives = 111/338 (32%), Gaps = 33/338 (9%) Query: 95 GQANVILIGHDG----KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G N+ + G + + R R S+I VS + G Sbjct: 77 GNMNIRIWTKKGVDFIAPYTPKEPVKPRYTWTYTPQYRSVAYLSDILGGYVSGSFNNSGA 136 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG----EDQVTLKVTIAEVR 206 V + + + S Y + + + D+V + + EV+ Sbjct: 137 VISDDSLKGSSGASNYINRTGDILVYYGTKEDIAILKTLVTSLDTMSDEVVVSGYVFEVQ 196 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 G + S + S A F++ + S + + + L+ Sbjct: 197 TSQSDGSGILLAAKILSDKFNISVGAAGLDNFIN----------IRTGSIDAIFNLLKTD 246 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + ++ P L + SASF+ G TV+++T SV GV+ + TP+ + Sbjct: 247 SRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVLFNVTPS-I 305 Query: 324 SPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + L+IQ ++S V + P+ R T V L G I+L GL + + Sbjct: 306 KSRTMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQKDSKAS 365 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G + F + +T+I + V Sbjct: 366 SGW----------SFFGSRTSESNKTDIMVMLQVRKVD 393 >gi|149190975|ref|ZP_01869237.1| hypothetical protein VSAK1_26575 [Vibrio shilonii AK1] gi|148835218|gb|EDL52193.1| hypothetical protein VSAK1_26575 [Vibrio shilonii AK1] Length = 479 Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 52/311 (16%), Positives = 91/311 (29%), Gaps = 26/311 (8%) Query: 125 MTLRRFIADSNIRVEMVSD-TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 L D +I E+ +D VL G S + + + Sbjct: 180 QFLNIGYQDVDIISEIANDVRNVLGG---DEAAKNAVTASSNMSAITVTTSPDKMQTVEH 236 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEG 242 ++ QV L V I E D+ + G + + S G K F G Sbjct: 237 LIEHYQKELSKQVLLDVRIVEFFSDVGTERGVNWNLVYDSGEGIVKFFVPGTNTLSKQAG 296 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + +G E ++ LE+ ++ + T + Q A T Y SS Sbjct: 297 YGMAFEGTGKWSGSEALIKVLEQQGSVSSETPVTYMVSNNQPARITQQRDVPYLYEVSSN 356 Query: 303 GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------AGDMP 349 + + GV T V S + LR+ ++ + Sbjct: 357 SNENTVSTGVTRKTEVEGVDFMVTANVQSD-YVSLRMSGQLQKITKEETKKVENIDLGFL 415 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + + +L G T V+A + + + LF + E E Sbjct: 416 TTQKSEITFANKLRYGQTYVIASVKQQTKTAEETK-------NFFSTLFGGTGSKNETIE 468 Query: 410 IFIAATPFLVK 420 + TP V+ Sbjct: 469 TLVLLTPRKVQ 479 >gi|306813501|ref|ZP_07447691.1| putative phage-related secreted protein [Escherichia coli NC101] gi|305853246|gb|EFM53686.1| putative phage-related secreted protein [Escherichia coli NC101] Length = 414 Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 60/338 (17%), Positives = 111/338 (32%), Gaps = 33/338 (9%) Query: 95 GQANVILIGHDG----KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G N+ + G + + R R S+I VS + G Sbjct: 77 GNMNIRIWTKKGVDFIAPYTPKEPVKPRYTWTYTPQYRSVAYLSDILGGYVSGSFNNSGA 136 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG----EDQVTLKVTIAEVR 206 V + + + S Y + + + D+V + + EV+ Sbjct: 137 VISDDSLKGSSGASNYINRTGDILVYYGTKEDIAILKTLVTSLDTMSDEVVVSGYVFEVQ 196 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 G + S + S A F++ + S + + + L+ Sbjct: 197 TSQSDGSGILLAAKILSDKFNISVGAAGLDNFIN----------IRTGSIDAIFNLLKTD 246 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + ++ P L + SASF+ G TV+++T SV GV+ + TP+ + Sbjct: 247 SRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVLFNVTPS-I 305 Query: 324 SPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + L+IQ ++S V + P+ R T V L G I+L GL + + Sbjct: 306 KSRTMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQKDSKAS 365 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G + F + +T+I + V Sbjct: 366 SGW----------SFFGSRTSESNKTDIMVMLQVRKVD 393 >gi|327412691|emb|CAX67687.1| putative Type IV pilus lipoprotein (PilN) [Yersinia enterocolitica] Length = 562 Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 84/253 (33%), Gaps = 33/253 (13%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVL 251 QV L V + V + +Q G + S + + G S+ Sbjct: 317 RQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINAADNAFSGGLSILDTA 376 Query: 252 DRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300 + + ++ AL + + + E I+ F Q Y SS Sbjct: 377 TGPAAKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGYIQSSSTTATAN 436 Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350 +T + G+ + P + G + L+ +S+ G D P+ Sbjct: 437 AGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPTIQPFFSHDGNTRTDTPA 496 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALF-RNSRFNREE 407 +++R TV + +G T+VL G + D K+G P LF + Sbjct: 497 FKLRSLTQTVNMRAGQTLVLTGADQLDSVANKQGAFTPG-------NFLFGGGHVGSDTR 549 Query: 408 TEIFIAATPFLVK 420 T + I TP L++ Sbjct: 550 TTLVILITPVLLR 562 >gi|218691155|ref|YP_002399367.1| putative type IV pilus outer membrane secretin lipoprotein [Escherichia coli ED1a] gi|218428719|emb|CAR09511.1| putative type IV pilus outer membrane secretin lipoprotein [Escherichia coli ED1a] Length = 533 Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 77/265 (29%), Gaps = 22/265 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 V N + QV L + I +++ +Q G + S Sbjct: 273 TVTDTPQVLDTVKNFMEERNREMRRQVVLNIEILSIKKTSKEQAGIDWNAVFSDGHLGID 332 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + F + L AL + + + + + Sbjct: 333 LTSAFTNAADEVVTSGVSIIDGKLTGSKAFLKALSSQGKVSVVTQNSAVTKNLTPVPMQV 392 Query: 290 GGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGR-------IGLRIQT 334 Q Y ++ +V T G + P + + L + Sbjct: 393 ASQQGYIESVTTDTTANVGSSTSLNAATITTGFNMTLLPFIQPGSHRLQLLFSMSLSDKP 452 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 G + PS ++ + T++L S T++L+G + + L++G+ P Sbjct: 453 VFEVFESGGSRAQTPSVELKTINQTIDLKSDQTVILSGFQQFSRKSLRQGV----GTPSF 508 Query: 395 GALFRNSRFNREETEIFIAATPFLV 419 L ++T + + TP ++ Sbjct: 509 FGLGGGVDSADDDTILVVLITPHVI 533 >gi|37955689|gb|AAP22528.1| PilN [Pseudomonas aeruginosa] Length = 569 Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 81/258 (31%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236 ++++N N + QV L V + V Q+G ++ S Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289 +S + ++ AL + + T+ P++T ++ QSA Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435 Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342 Q ST + G + P V+ G I + + G Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 551 TRNTKREVIVVLITPVVL 568 >gi|152986390|ref|YP_001349821.1| type IVB pilus formation outer membrane protein [Pseudomonas aeruginosa PA7] gi|150961548|gb|ABR83573.1| type IVB pilus formation outer membrane protein, R64 PilN family [Pseudomonas aeruginosa PA7] Length = 569 Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 81/258 (31%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236 ++++N N + QV L V + V Q+G ++ S Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289 +S + ++ AL + + T+ P++T ++ QSA Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435 Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342 Q ST + G + P V+ G I + + G Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 551 TRNTKREVIVVLITPVVL 568 >gi|126668015|ref|ZP_01738979.1| hypothetical protein MELB17_09748 [Marinobacter sp. ELB17] gi|126627525|gb|EAZ98158.1| hypothetical protein MELB17_09748 [Marinobacter sp. ELB17] Length = 498 Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 76/239 (31%), Gaps = 18/239 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L++ A V + + ++ + + + Sbjct: 259 RQVHLQIRTASVTVENANDFNLTWNNILNTVNNGDFDVGLNSAAVSTAANPNILNVIRTS 318 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------G 303 L L + T + E ++T +S Q AS + Y + S Sbjct: 319 TGASLALEMLAQETESTEINEQSVTTLSNQPASLKVLSETGYISGISQQETSGDLNNVIS 378 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVE- 361 VTT G P V+S + L++ E+S + +N + R +T V+ Sbjct: 379 DVEVTTITTGFDATLVPRVVSDSVLQLQVALELSNNLQLINFDSTIVQTPTRNRNTVVQR 438 Query: 362 --LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G T +LA + G + LG + + + + I TP + Sbjct: 439 AWLRNGETWILAAFNSEKTTNKISGT-GSAGFWGLG---GGTSKSNNQQVLLIMITPHI 493 >gi|148807357|gb|ABR13431.1| putative PilN [Pseudomonas aeruginosa] Length = 569 Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236 ++++N N + QV L V + V Q+G ++ S Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289 +S + ++ AL + + T+ P++T ++ QSA Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435 Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342 Q ST + G + P V+ G I + + G Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + G Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 550 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 551 TRNTKREVIVVLITPVVL 568 >gi|315499170|ref|YP_004087974.1| type II and iii secretion system protein [Asticcacaulis excentricus CB 48] gi|315417182|gb|ADU13823.1| type II and III secretion system protein [Asticcacaulis excentricus CB 48] Length = 543 Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 92/278 (33%), Gaps = 8/278 (2%) Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 + L+ + Q + L DQV++ V I + +G Sbjct: 211 DAKLVLTRMSELERTGLQDIPQAGGGETPTLPPETPDQVSVDVAIILSQNAQRDSVGVNL 270 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPT 276 + GG G ++ + L+ R + +A P Sbjct: 271 LDGLQLQYGRQDQQNHSGGDT---GVTRTITDTITLPQLTYNLNLFNRFGQYYQVVARPM 327 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 LTA G+ + F G K + + D G + TP ++ R LRI+ Sbjct: 328 LTAYRGEPSDFFVGRS--TKVAVKGVNFSQLENIDIGTQVKVTPVEITSDRTRLRIEVTR 385 Query: 337 SEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 S + + TTVE+ G T++L+GL + PL+ P++ Sbjct: 386 SFLSGEPAGNFNEALNTWRQTVSTTVEVRFGTTLILSGLSESVRDSSVTKTPLIGDAPLI 445 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 G+ F N+ + + TP + + + SR D Sbjct: 446 GSGFNRRVTNQRRDAVLVLVTPSPARVMESQGWSRQAD 483 >gi|67639316|ref|ZP_00438187.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei GB8 horse 4] gi|238519853|gb|EEP83319.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei GB8 horse 4] Length = 441 Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S ++V + QV L VT+ V G ++ Sbjct: 161 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 220 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277 + F ++ D S + F ++ AL + +R ++ Sbjct: 221 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 280 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329 T ++ Q Q Y S+T +V + G + P VL G + Sbjct: 281 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 340 Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 L+ T +S E + P +R V + SG T+V++G + Sbjct: 341 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 400 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ P + AL R I I TP Sbjct: 401 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 434 >gi|167743301|ref|ZP_02416075.1| hypothetical protein Bpse14_34822 [Burkholderia pseudomallei 14] Length = 403 Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220 + + S ++V + QV L VT+ V G ++ Sbjct: 123 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 182 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277 + F ++ D S + F ++ AL + +R ++ Sbjct: 183 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 242 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329 T ++ Q Q Y S+T +V + G + P VL G + Sbjct: 243 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 302 Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 L+ T +S E + P +R V + SG T+V++G + Sbjct: 303 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 362 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ P + AL R I I TP Sbjct: 363 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 396 >gi|300310142|ref|YP_003774234.1| type IVB pilus formation outer membrane protein [Herbaspirillum seropedicae SmR1] gi|300072927|gb|ADJ62326.1| type IVB pilus formation outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 602 Score = 95.2 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 75/252 (29%), Gaps = 35/252 (13%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----ADFGGKFVSEGGDFSVK 248 Q+ + VT+ V Q G + S + A VS Sbjct: 351 SRQIAINVTVLSVTLSDDDQYGINWNAVYRSLNSTFGIANAYEGALSTGLVSFTAGIPSS 410 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G + V+ AL + +R ++ ++ Q Q Y S+ V Sbjct: 411 GTSGFSGSQAVIQALSQQGKVRRQTTASVVTLNNQPVPVQVARQTTYLQSLQSSLVAQVG 470 Query: 309 T--------HDYGVVLHFTPTVLSPGRIGLRIQTEVS-------------EPVIGVNAGD 347 T G + P +L+ G + L+ T++S + Sbjct: 471 TTTSLTPGVVTAGFNMSILPHMLTNGTVMLQFSTDISTLRRIRQITASTDSSGRATALIE 530 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP---ILGALFRNSRFN 404 P R V + S T++++G + D + G+ P +LG Sbjct: 531 SPELDTRNFLQRVAMKSNETLIISGFEQTDENLGRSGV---GD-PKNLLLG---GGVSAA 583 Query: 405 REETEIFIAATP 416 + I + TP Sbjct: 584 TNKEVIVVLITP 595 >gi|87306498|ref|ZP_01088645.1| general secretory pathway protein D-like [Blastopirellula marina DSM 3645] gi|87290677|gb|EAQ82564.1| general secretory pathway protein D-like [Blastopirellula marina DSM 3645] Length = 1313 Score = 94.8 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 89/308 (28%), Gaps = 83/308 (26%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QVT++V + + ++IG + + G G Sbjct: 990 QVTIEVRFITLNDNFFERIGIDFDLDIKDNTSGIGTNRGSDGSPSITIGLDQTGNPTSDL 1049 Query: 255 SFET--------------------------------------VLHALERATAIRTLAEPT 276 V+ A + + P Sbjct: 1050 DLSFAQNSFGNTVPAIGGLGAAAGSIGGSFGFAMLSDIEAFFVMQAAQSDLRSNVMQAPK 1109 Query: 277 LTAISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGR-I 328 +T +GQ+A T Q + T ++ + + G L V + R + Sbjct: 1110 VTLFNGQTAFVTDSTQRPFVTSVTPVVGDFAAAQQPVIVVLNEGTSLTVQAVVSADRRFV 1169 Query: 329 GLRIQTEVSEP-------------------------------------VIGVNAGDMPSY 351 L + S+ + P + Sbjct: 1170 RLTLVPMFSQIGEVDTFTFEGTSSSRADSTVEDPDAADGGTTTDNEEEQMTGTTVQQPEF 1229 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + TTV +P GGT++L G+ + ++ + G+P++SK+P + LFRN R + Sbjct: 1230 SIITVTTTVSVPDGGTVLLGGIKRLSEERREAGVPIVSKLPYINRLFRNVGIGRSTQSLM 1289 Query: 412 IAATPFLV 419 + TP ++ Sbjct: 1290 MMVTPRII 1297 >gi|107099850|ref|ZP_01363768.1| hypothetical protein PaerPA_01000870 [Pseudomonas aeruginosa PACS2] Length = 524 Score = 94.8 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236 ++++N N + QV L V + V Q+G ++ S Sbjct: 271 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 330 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289 +S + ++ AL + + T+ P++T ++ QSA Sbjct: 331 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 390 Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342 Q ST + G + P V+ G I + + G Sbjct: 391 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 450 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + G Sbjct: 451 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 505 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 506 TRNTKREVIVVLITPVVL 523 >gi|123443695|ref|YP_001007666.1| putative type IV pilus operon lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090656|emb|CAL13527.1| putative type IV pilus operon lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 562 Score = 94.8 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 84/253 (33%), Gaps = 33/253 (13%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVL 251 QV L V + V + +Q G + S + + G S+ Sbjct: 317 RQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINAADNAFSGGLSILDTA 376 Query: 252 DRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300 + + ++ AL + + + E I+ F Q Y SS Sbjct: 377 TGPAAKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGYIQSSSTTATAN 436 Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350 +T + G+ + P + G + L+ +S+ G D P+ Sbjct: 437 AGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPTIQPFFSRDGNTRTDTPA 496 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALF-RNSRFNREE 407 +++R TV + +G T+VL G + D K+G P LF + Sbjct: 497 FKLRSLTQTVNMRAGQTLVLTGADQLDSVANKQGAFTPG-------NFLFGGGHVGSDTR 549 Query: 408 TEIFIAATPFLVK 420 T + I TP L++ Sbjct: 550 TTLVILITPVLLR 562 >gi|254238773|ref|ZP_04932096.1| type IV pilus protein PilN [Pseudomonas aeruginosa C3719] gi|126170704|gb|EAZ56215.1| type IV pilus protein PilN [Pseudomonas aeruginosa C3719] Length = 569 Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 81/258 (31%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236 ++++N N + QV L V + V Q+G ++ S Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289 +S + ++ AL + + T+ P++T ++ QSA Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435 Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342 Q ST + G + P V+ G I + + G Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 551 TRNTKREVIVVLITPVVL 568 >gi|167820480|ref|ZP_02452160.1| hypothetical protein Bpse9_35477 [Burkholderia pseudomallei 91] Length = 411 Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 163 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 222 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 223 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 282 Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 283 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 342 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 343 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 398 Query: 411 FIAATP 416 I TP Sbjct: 399 VILITP 404 >gi|87300799|ref|ZP_01083641.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 5701] gi|87284670|gb|EAQ76622.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 5701] Length = 911 Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 10/163 (6%) Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPT 321 L AT RT A + + Q + T ++ + T G+ Sbjct: 729 LSPATIGRTRANESFVTVGRQ-----VVSAYDVTTTANVGVSCEPTFSTAGLTFGARVSK 783 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADT-TVELPSGGTIVLAGLLKDD 377 + G + + +S V + R+ DT +V + G T++L G++ DD Sbjct: 784 IDDNGFVTFTLSPAISGVVDRQPVPGCGFIDILRLRRLDTGSVRVRDGQTLILTGVISDD 843 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 Q+ P+L +P+LG FR + +R + E+ I TP ++ Sbjct: 844 DFQVVSKWPILGDLPLLGQFFRKTSGSRNKNELVILVTPRIID 886 >gi|167898912|ref|ZP_02486313.1| hypothetical protein Bpse7_34586 [Burkholderia pseudomallei 7894] Length = 417 Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 169 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 228 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 229 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 288 Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 289 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 348 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 349 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 404 Query: 411 FIAATP 416 I TP Sbjct: 405 VILITP 410 >gi|49658861|emb|CAF28487.1| putative lipoprotein [Yersinia pseudotuberculosis] Length = 530 Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 83/252 (32%), Gaps = 31/252 (12%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVL 251 QV L V + V + +Q G + S + + G S+ Sbjct: 285 RQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINAANNTLSGGLSILDTA 344 Query: 252 DR-----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300 E ++ AL + + + E I+ F Q Y SS Sbjct: 345 TGPAEKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGYIQSSSTTVTAN 404 Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350 +T + G+ + P + G + L+ +S+ I G D P+ Sbjct: 405 AGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPIIQPFFSRDGNTRNDTPA 464 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALFRNSRFNREET 408 +++R TV L +G T+VL G + D K+G P S G T Sbjct: 465 FKLRSLTQTVNLRAGQTLVLTGADQLDTVANKQGAFTP--SNFWWGG----GHNGLETRT 518 Query: 409 EIFIAATPFLVK 420 + I TP L++ Sbjct: 519 TLVILITPVLLR 530 >gi|167907237|ref|ZP_02494442.1| hypothetical protein BpseN_33715 [Burkholderia pseudomallei NCTC 13177] Length = 419 Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 171 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 230 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 231 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 290 Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 291 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 350 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 351 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 406 Query: 411 FIAATP 416 I TP Sbjct: 407 VILITP 412 >gi|32481696|gb|AAP84210.1| PilN2 [Pseudomonas aeruginosa PA14] Length = 540 Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236 ++++N N + QV L V + V Q+G ++ S Sbjct: 287 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 346 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289 +S + ++ AL + + T+ P++T ++ QSA Sbjct: 347 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 406 Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342 Q ST + G + P V+ G I + + G Sbjct: 407 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 466 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + G Sbjct: 467 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 521 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 522 TRNTKREVIVVLITPVVL 539 >gi|167923443|ref|ZP_02510534.1| hypothetical protein BpseBC_33112 [Burkholderia pseudomallei BCC215] Length = 413 Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 165 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 224 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 225 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 284 Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 285 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 344 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 345 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 400 Query: 411 FIAATP 416 I TP Sbjct: 401 VILITP 406 >gi|167724338|ref|ZP_02407574.1| hypothetical protein BpseD_35290 [Burkholderia pseudomallei DM98] gi|167850311|ref|ZP_02475819.1| hypothetical protein BpseB_34040 [Burkholderia pseudomallei B7210] Length = 414 Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 166 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 225 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 226 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 285 Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 286 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 345 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 346 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 401 Query: 411 FIAATP 416 I TP Sbjct: 402 VILITP 407 >gi|167915601|ref|ZP_02502692.1| hypothetical protein Bpse112_34291 [Burkholderia pseudomallei 112] Length = 433 Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 185 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 244 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 245 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 304 Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 305 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 364 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 365 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 420 Query: 411 FIAATP 416 I TP Sbjct: 421 VILITP 426 >gi|167828852|ref|ZP_02460323.1| hypothetical protein Bpseu9_34514 [Burkholderia pseudomallei 9] Length = 415 Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 167 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 226 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 227 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 286 Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 287 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 346 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 347 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 402 Query: 411 FIAATP 416 I TP Sbjct: 403 VILITP 408 >gi|296391291|ref|ZP_06880766.1| Type IV B pilus protein [Pseudomonas aeruginosa PAb1] Length = 528 Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236 ++++N N + QV L V + V Q+G ++ S Sbjct: 275 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 334 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289 +S + ++ AL + + T+ P++T ++ QSA Sbjct: 335 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 394 Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342 Q ST + G + P V+ G I + + G Sbjct: 395 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 454 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + G Sbjct: 455 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 509 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 510 TRNTKREVIVVLITPVVL 527 >gi|213019427|ref|ZP_03335233.1| type II secretion system protein, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994849|gb|EEB55491.1| type II secretion system protein, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 448 Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 85/266 (31%), Gaps = 52/266 (19%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++ +N + QV ++ I EV D G + + + + + Sbjct: 194 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGINLNDLHNETKSITNQDS------ 247 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 S+ ++ E ++ L++ ++ P + AI+ Q A + H+Y T Sbjct: 248 -------SITSLVMNSDLENLVKTLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 300 Query: 299 SSSTGA--------TSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345 T + + GVVL P++ I + I +S Sbjct: 301 DIQKDTGNSNHALITKMNSTPIGVVLIIHPSINIDTNEIFMDIHPTLSRINNYTKDPNIE 360 Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 D+P R+ +T+++ SG +V+ GL++ Sbjct: 361 YVAQQNKMKLNSDIPIIETREMHSTLKIKSGEVMVIGGLIEHRKDNQ------------- 407 Query: 395 GALFRNSRFNREET-EIFIAATPFLV 419 L +T E I +V Sbjct: 408 -NLLHQKSKKLAKTVETVIFLKATIV 432 >gi|167615506|ref|ZP_02384141.1| type IV pilus biogenesis protein PilN, putative [Burkholderia thailandensis Bt4] Length = 417 Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G S+ + + F +++ D S + Sbjct: 169 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTKPADLSATVLSP 228 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 229 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 288 Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----------GVNAGDMPS 350 G + P VL G + L+ T +S + P Sbjct: 289 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSSTGGRSAARIQTPD 348 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 349 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 404 Query: 411 FIAATP 416 I TP Sbjct: 405 VILITP 410 >gi|213419653|ref|ZP_03352719.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 173 Score = 94.4 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 6/132 (4%) Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRK 355 ++ YG ++ P + G+I + + E + +P Sbjct: 6 GERNVALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTL 65 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T +P G ++++ G +D + IP+L K+P++G+LFR S N+ Sbjct: 66 ISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRVFMIE 125 Query: 416 PF-LVKPVAMRD 426 P +V P+ Sbjct: 126 PKEIVDPLTPDA 137 >gi|167577356|ref|ZP_02370230.1| type IV pilus biogenesis protein PilN, putative [Burkholderia thailandensis TXDOH] Length = 425 Score = 94.4 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G S+ + + F +++ D S + Sbjct: 177 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTKPADLSATVLSP 236 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 237 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 296 Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----------GVNAGDMPS 350 G + P VL G + L+ T +S + P Sbjct: 297 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSSTGGRSAARIQTPD 356 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 357 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 412 Query: 411 FIAATP 416 I TP Sbjct: 413 VILITP 418 >gi|153947286|ref|YP_001402688.1| type IVB pilus formation outer membrane protein [Yersinia pseudotuberculosis IP 31758] gi|152958781|gb|ABS46242.1| type IVB pilus formation outer membrane protein, R64 PilN family [Yersinia pseudotuberculosis IP 31758] Length = 530 Score = 94.4 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 82/252 (32%), Gaps = 31/252 (12%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L V + V + +Q G + S + + + + Sbjct: 285 RQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINVANNTLSGGLSILDTA 344 Query: 254 F-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300 E ++ AL + + + E I+ F Q Y SS Sbjct: 345 TGPAEKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGYIQSSSTTVTAN 404 Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350 +T + G+ + P + G + L+ +S+ I G D P+ Sbjct: 405 AGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPIIQPFFSRDGNTRNDTPA 464 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALFRNSRFNREET 408 +++R TV L +G T+VL G + D K+G P S G T Sbjct: 465 FKLRSLTQTVNLRAGQTLVLTGADQLDTVANKQGAFTP--SNFWWGG----GHNGLETRT 518 Query: 409 EIFIAATPFLVK 420 + I TP L++ Sbjct: 519 TLVILITPVLLR 530 >gi|37525036|ref|NP_928380.1| hypothetical protein plu1051 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784462|emb|CAE13346.1| pilN [Photorhabdus luminescens subsp. laumondii TTO1] Length = 567 Score = 94.4 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 85/250 (34%), Gaps = 27/250 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L V + V +Q+G + + + G + S + G + G ++ Sbjct: 322 RQVLLNVQVLSVSTSRKEQMGLDWGLVYNSLHNLGATLSGSFSGMGSGTTSAGVSILESA 381 Query: 251 LDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + ++ AL + + + Q +Y SS+T AT Sbjct: 382 TGKAAKLSGSSLLIKALSEQGNVSVVTSQGSATTNLTPIPIQMADQTVYVAQSSTTTATD 441 Query: 307 V--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350 V G + P + G + L++ +S+P G + +MP Sbjct: 442 VGATTALTPGMITTGFNMTLLPLIQRNGDVQLQVAFNLSDPPTIRSFTSKEGNSYIEMPY 501 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+R V L +G +VL G + D + K G +LG + + + Sbjct: 502 TRLRSLSQKVNLRAGQALVLTGFEQADTRVTKTGTFTPGNF-LLG---GGQSGENQRSTL 557 Query: 411 FIAATPFLVK 420 I TP L+ Sbjct: 558 VILITPVLLD 567 >gi|116052606|ref|YP_792921.1| Type IV B pilus protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115587827|gb|ABJ13842.1| Type IV B pilus protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 545 Score = 94.0 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236 ++++N N + QV L V + V Q+G ++ S Sbjct: 292 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 351 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289 +S + ++ AL + + T+ P++T ++ QSA Sbjct: 352 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 411 Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342 Q ST + G + P V+ G I + + G Sbjct: 412 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 471 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + G Sbjct: 472 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 526 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 527 TRNTKREVIVVLITPVVL 544 >gi|171317904|ref|ZP_02907080.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] gi|171096911|gb|EDT41783.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] Length = 460 Score = 94.0 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 59/371 (15%), Positives = 113/371 (30%), Gaps = 40/371 (10%) Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 DV+DV+V V + + K G ++ + + R + Sbjct: 106 SRDVRDVMVDFLDSLGFQVVTKNGVDYVMKKPGA----VLAKADRDVYVYKPR-YRKASE 160 Query: 123 LEMTLRRFIAD----SNIRVEMVSDTVVLHGMVRTIQDSQR-----AVELSETFLSQSGR 173 L + I + V V+ V V + ++ ++ Sbjct: 161 LRELVEPLIGARSMLPPVSVGPVAGDAVGAVQVPGAPAAMPNSGPFVQPVAGGVQARGSD 220 Query: 174 NQYANSSSKKVMNLLNIA----GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 S + + + +V ++ EV S+ + Sbjct: 221 LVIVGSRDEVALLRKVVPELDTAPGEVVVRGWAYEVTNTDSAN---------SAWSIAAK 271 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + S + + AL + + ++ P + SG+ Sbjct: 272 VLGGQLRISSGDTSSDSSAVRFTGPGIDAAISALNADSRFKVISSPHVRIASGEKVRLNV 331 Query: 290 GGQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-V 343 G Q + SS T S+T D G++ PTV+ I LR+ E+S+ V Sbjct: 332 GQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMRD-AIELRVHEEISDFVATKT 390 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P+ R+ T L G +VL GL++D + G L P + Sbjct: 391 GVDTSPTKNTRQLQTVTRLKDGEVVVLGGLIQDRNATARSGYAWL---P---SFLDGRSS 444 Query: 404 NREETEIFIAA 414 +++ TE+ + Sbjct: 445 SKQRTEVLLVL 455 >gi|171322813|ref|ZP_02911537.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia ambifaria MEX-5] gi|171091832|gb|EDT37330.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia ambifaria MEX-5] Length = 346 Score = 94.0 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 78/244 (31%), Gaps = 24/244 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGV 250 QV L VT+ V G S+ + + F ++ G + Sbjct: 100 SRQVMLNVTVLSVSLKAGDAYGIDWSLVYKTVSAQFGISNPFTPAALTPGDLSATVLSPT 159 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-- 308 + ++ AL + +R ++T ++ Q Q Y S+T +V Sbjct: 160 SRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGSS 219 Query: 309 ------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSYR 352 T G + P VL G + L+ T +S G P Sbjct: 220 TALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKDVSSSTGSGATRIQTPDVD 279 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +R V + SG T+V++G + + GI P + AL R I I Sbjct: 280 MRNFLQRVAMKSGETLVISGYEGTNDSLDERGI----GTPKMIALGGGYEAQRSREVIVI 335 Query: 413 AATP 416 TP Sbjct: 336 LITP 339 >gi|311279575|ref|YP_003941806.1| type II and III secretion system protein [Enterobacter cloacae SCF1] gi|308748770|gb|ADO48522.1| type II and III secretion system protein [Enterobacter cloacae SCF1] Length = 406 Score = 93.7 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 19/225 (8%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 D+V + + EV+ G + + G + + Sbjct: 189 DEVFIAGYVFEVQTSERNGSGLALAAK--------LLGGKIEIGMGNMSGGYENFIRIGG 240 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---SSSTGATSVTTH 310 S + + + ++ P L SG SA+F+ G + + + ++ SV Sbjct: 241 SSLDAMYELFRTDSRFNVVSSPRLRVKSGYSATFSVGQEVPVLSGIDRNQNSTYQSVDYR 300 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIV 369 GV+L TP+ + L+I ++S + + P+ R+ T V + SG +V Sbjct: 301 SAGVILDVTPS-VRNSVTDLKISQQLSNFIKTDTGVNNTPTLIKREVSTFVSVKSGDIVV 359 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 L GL + + G L K +LG + + +T+I I Sbjct: 360 LGGLAETKDSDARTGFSFLPK--VLG----SRSDEKSKTDILIVL 398 >gi|83720458|ref|YP_443762.1| phage-related secreted protein [Burkholderia thailandensis E264] gi|83654283|gb|ABC38346.1| probable phage-related secreted protein YPO2280 [Burkholderia thailandensis E264] Length = 460 Score = 93.7 bits (231), Expect = 7e-17, Method: Composition-based stats. Identities = 59/370 (15%), Positives = 116/370 (31%), Gaps = 38/370 (10%) Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL--DILIERDI 120 DV+DV+V V + + + G ++ + + D+ Sbjct: 106 SRDVRDVMVDFLDSLGFQVVTKNGVDYVMRKPGA----VLAKADRDVYVYKPRYRKASDL 161 Query: 121 AHLEMTL---RRFIADSNI--RVEMVSDTVVLHGM-VRTIQDSQRAVELSETFLSQSGRN 174 L L + ++ + V + G ++ A ++ ++ G Sbjct: 162 RELVEPLIGSHSMLPPVSVGPVAGESAGAVQVPGAPAAVPTNAPVAQPVASGVQARGGEL 221 Query: 175 QYANSSSKKVMNLLNIA----GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 S + M + +V ++ EV T S+ + Sbjct: 222 VIVGSRDEVAMLRKLVPELDTAPGEVVVRGWAYEVTNTDS---------TNSAWSIAAKV 272 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + + + AL + + ++ P + SG+ G Sbjct: 273 LGGQLRISSGDTSSDKSAVRFTGPGIDAAISALNADSRFKVISSPHVRIASGERVRLNVG 332 Query: 291 GQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VN 344 Q + SS T S+T D G++ PTV+ I LR+ E+S+ V Sbjct: 333 QQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMRD-AIELRVHEEISDFVPTKTG 391 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P+ R+ T L G +VL GL++D + G L P + + Sbjct: 392 VDTSPTKNTRQLQTVTRLTDGEVVVLGGLIQDRNSTARSGYAWL---P---SFLDGRSSS 445 Query: 405 REETEIFIAA 414 ++ TE+ + Sbjct: 446 KQRTEVLLVL 455 >gi|257465733|ref|ZP_05630104.1| putative phage-related secreted protein [Actinobacillus minor 202] gi|257451393|gb|EEV25436.1| putative phage-related secreted protein [Actinobacillus minor 202] Length = 375 Score = 93.3 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 95/294 (32%), Gaps = 45/294 (15%) Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 L F+A V D +V +G I + ++ + Sbjct: 118 EYLAGFLAGEG-EVFANGDKLVYYGTSEDIARIKSVLKAVDM------------------ 158 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 +V + + EV+ D+ K+ GS + G + Sbjct: 159 -------KSREVIVTGYVFEVQ-DVEKE--------GSGINLLAKLLSGKLGISIGVKQS 202 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSS 301 + ++ + + + + ++ P L SG +F+ G T Sbjct: 203 YENFITVNAGNLDAIFELFRTDGRFQVVSSPILRVKSGSKGNFSVGSDVPILSNVTYQDG 262 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTV 360 ++ GV+ PT + I L+IQ ++S V P+ R T V Sbjct: 263 KPIQAIEYRSSGVIFDIQPT-IKNQSIDLKIQQQLSNFVKTDTGVNQSPTLIKRDLVTDV 321 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + SG IVL GL ++ + + + G L K G L + +T+I + Sbjct: 322 SVKSGDVIVLGGLAENKLTEGETGFSFLPK----GWL-TGKSKSSTKTDIIVLL 370 >gi|225874164|ref|YP_002755623.1| hypothetical protein ACP_2600 [Acidobacterium capsulatum ATCC 51196] gi|225791968|gb|ACO32058.1| hypothetical protein ACP_2600 [Acidobacterium capsulatum ATCC 51196] Length = 612 Score = 93.3 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 14/228 (6%) Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + E+ L + G +I G DF FV GG + G + + Sbjct: 376 VQEIISSGLAKAGDWETIIGILLAAGDISGTDFNNPFVIFGGGITETGAEWNTT---AAN 432 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTGATSVTTHDY 312 L ++ + +L + L+ + A+F G ++ T S+ + + Sbjct: 433 MLLTSSNVISLDQVQLSVRDQKEATFLDGERYPIMTGKLSNLGNLGESTGTSPQFQYVNL 492 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G+ L TP++ + + L ++ ++S G D+P R+ V + +G + ++ Sbjct: 493 GLTLKVTPSIQANKNVTLHMKLQLSGLA-GTTLDDIPVLTNRQYSGEVSIHAGYSALIVS 551 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G+P LS+IP L + N + + E+ I TP +++ Sbjct: 552 SMSKQNNLDLTGMPGLSEIPDLHDM-TNRDTSSSDQELVILVTPHIIR 598 >gi|161617498|ref|YP_001591463.1| hypothetical protein SPAB_05357 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161366862|gb|ABX70630.1| hypothetical protein SPAB_05357 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 557 Score = 93.3 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 82/251 (32%), Gaps = 27/251 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L + I V + +Q+G + S + + G + + Sbjct: 311 SRQVQLNIQIVSVNQTRNEQLGLDWGLVYKSLHNFGATLTGSMANASTSAGSAGISILDT 370 Query: 253 RFSFET-------VLHALERATAIRTLAEPTLTAISGQS-ASFTSGGQHLYKTVSSS--- 301 ++ AL + T + A S Q + + SS+ Sbjct: 371 ATGNAAKFSGSSLLIKALSEQGNVSMALNQTDPTANLTPVAYQLSNQQGVLTSSSSTATA 430 Query: 302 ----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMP 349 T + +VTT G+ + P + G + L+ + P G D+P Sbjct: 431 NVGVTSSQTVTTITTGLFMTMLPFIQENGDVQLQFAFSYTSPPQIEKFISRDGNTRNDIP 490 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + V L SG T+VL G + ++ K+G ILG R Sbjct: 491 NTSTQGLARKVNLRSGQTLVLTGSEQQNLSANKQGT-FTPDNFILG---GGQNGTRGRNT 546 Query: 410 IFIAATPFLVK 420 + I TP L++ Sbjct: 547 LVIMITPVLLR 557 >gi|327538217|gb|EGF24896.1| protein containing Type II and III secretion system domain [Rhodopirellula baltica WH47] Length = 109 Score = 92.9 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 44/92 (47%) Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + +V ++ P R TTV + G TIV+ GL++ + IP LS+ Sbjct: 9 EVSEDVRNATPALSINQYPIINRRSVSTTVSVKDGKTIVIGGLVQRETVDRVNRIPGLSR 68 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +P +G LF+ ++ + E+ I +P +V+ Sbjct: 69 LPGVGYLFQTTQRQTRDAEVVIFISPRIVRST 100 >gi|222872747|gb|EEF09878.1| predicted protein [Populus trichocarpa] Length = 414 Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 42/321 (13%), Positives = 103/321 (32%), Gaps = 59/321 (18%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 + S+ + P + A I + + + +++ ++ + + + V++ D Sbjct: 135 AAGSIMRTPVTLQFRDANIRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNAAIED 191 Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 V V + T++++ + + + L D ++ Sbjct: 192 AVDLILLQSQLDKKVLNANTLFIYPATPAK-----QQEYQELKVRTFQLSNVDSKQVQSL 246 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L+ + + V+ ++TV + G TI+ +++ ++ L + Sbjct: 247 LKSLLKIKEVVVDERANTVTIRGTPDTIRVAEQM--IAAQDLPEPE-------------- 290 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 V L+V + EV R+ L +G + + + P+ + + + S Sbjct: 291 ---------VMLEVQVLEVSRERLTDLGIAWPNSFTMATPASATTWGVLHHLTANELEVS 341 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303 F T LA P + + + A G + + SS+ Sbjct: 342 PLSATANFKL--------TDTDANLLASPRIRTRNKEKARILIGDKVPVISSSSTPSTSG 393 Query: 304 ---ATSVTTHDYGVVLHFTPT 321 ++ D G+ L P Sbjct: 394 PSFTQTIQYLDVGIKLEVEPQ 414 >gi|38201735|ref|NP_938102.1| PilN [Serratia entomophila] gi|38176558|gb|AAR13124.1| PilN [Serratia entomophila] Length = 544 Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 74/241 (30%), Gaps = 19/241 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L V + V + Q G + +S S F G Sbjct: 307 RQVVLNVQVYSVEKRTQDQYGIDWNAVFNSGSIGLSLTNAFSGAASDALNGGVSILDGKG 366 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------ 307 + + AL + + E + + + Q Y + ++ +V Sbjct: 367 AGTKAFIKALSEQANVSVMTEASSMTTNLSAVPIQVALQQDYASSVTTENTANVGSSSSI 426 Query: 308 --TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 +T G + P ++ I + + + ++ R++ Sbjct: 427 TKSTITTGFNMTVLPFLMPKSPKMQLQFAINMSDDPTMRTFTSEKTSVELMKTRLKTFTQ 486 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + SG T+VL+G + +G+ G L ++ +T + I TP + Sbjct: 487 RVIMQSGQTLVLSGYQSLNNTANHQGV---GSFRFFG-LGGGAKGENNKTMLVILITPVI 542 Query: 419 V 419 + Sbjct: 543 L 543 >gi|327412973|emb|CAX67991.1| PilN (lipoprotein) [Salmonella enterica subsp. VII] Length = 560 Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 26/247 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L V + V +Q+G +I S+G S + + S Sbjct: 313 RQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDIANATSASVSILDTAT 372 Query: 251 LDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + F ++ AL + + + Q +Y SS+T T V Sbjct: 373 GNAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVAQSSTTTTTDV 432 Query: 308 T--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSY 351 G + P + G + L++ +S+P G + +MP Sbjct: 433 GATTSLTPGMMTTGFNMTLLPLIQDDGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYT 492 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++R L +G +VL G + + + K G +LG + + + Sbjct: 493 KLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLV 548 Query: 412 IAATPFL 418 I TP L Sbjct: 549 IIITPEL 555 >gi|330862295|emb|CBX72456.1| hypothetical protein YEW_HH31880 [Yersinia enterocolitica W22703] Length = 158 Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 15/159 (9%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M+ + + + +FL + V + + + + ++ Sbjct: 1 MKVARTRYLNQIVLFLVCMIIACF---------------IAVNRANAEPVYLSTGQSYMI 45 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + ++ V VS AD + ++ ++ K G A IL + + IL++ I Sbjct: 46 KTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDNTI 105 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 +R +S+I + + D+ +L G V T + ++ Sbjct: 106 TAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKKQ 144 >gi|238026031|ref|YP_002910262.1| type II secretory pathway, component PulD [Burkholderia glumae BGR1] gi|237875225|gb|ACR27558.1| Type II secretory pathway, component PulD [Burkholderia glumae BGR1] Length = 449 Score = 92.5 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 66/433 (15%), Positives = 125/433 (28%), Gaps = 54/433 (12%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVE-------------IGKG 47 MR L + + + +P A +P + + + IG Sbjct: 1 MRRLAVVLWFFAGVSCAAGSPVPASMPGLPPLPSVAGLSTGAGQAPLPAPPLVPLKIGDA 60 Query: 48 KKISIG-LNKVIILQV---PVDVQDVLVSDPTKADVVVHSPR------------TMYLFG 91 K + + +N ++ + + ++S AD + S R +L Sbjct: 61 KSVDLRFVNVAQVIDLVYADMLQSQYVISPDVLADTRLVSFRFDRTKGDIRDVLGDFLSS 120 Query: 92 KNVGQANV----ILI-----GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142 G + + A L + + + Sbjct: 121 LGFGVTARNGVDYVFKRKDDDQKEADKQVFVYSPKYRTADYLSRLVQPLFSGQFTMNRAV 180 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-QVTLKVT 201 V + A + + A + L + + +V ++ Sbjct: 181 PAAVGS-RAKADAPPTSAAAMVDQSSDTMVFLSSAKEIALLKSVLPQVDTKTGEVAIRAW 239 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + EV + + GFQ + S G + G S G + + Sbjct: 240 VYEVSTENDRTTGFQLAA--SILGGKLGVSLGVGTVDESANALRLHAGF-----LDAAIA 292 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVL 316 AL+ + + P L SG+ G SS+ SVT D GV+ Sbjct: 293 ALDSDSRFHVITSPNLRVESGKHGRLNVGQSVPVIDSVTYPNSSAAPLQSVTYQDAGVIF 352 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PT + I + E+S+ + P+ RK +T++ L G +V+ GL + Sbjct: 353 DVQPT-VKDDVIDTDVTVEISDFQRTSTGVNNSPTKNTRKVETSMTLRDGEVVVMGGLSE 411 Query: 376 DDIQQLKEGIPLL 388 + GI L Sbjct: 412 GKDSIVTSGIRWL 424 >gi|91791048|ref|YP_551999.1| type II and III secretion system protein [Polaromonas sp. JS666] gi|91700928|gb|ABE47101.1| type II and III secretion system protein [Polaromonas sp. JS666] Length = 566 Score = 92.5 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 81/248 (32%), Gaps = 26/248 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAADFGGKFVSEGGDFS 246 QV++ V + V D G + + + A + Sbjct: 324 RQVSVNVRVLSVALDDSDDYGINWDAVYKNLATASNAYSIALKTAFPIANGAGNLVISAP 383 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 ++ AL + L TL ++ Q + G + Y SS+T + Sbjct: 384 ATSGSRWAGSSAMISALSSQGRVTELTSSTLVTLNNQPSPVNVGRRVSYLQSSSTTQTAN 443 Query: 307 VT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYR 352 V T G + P ++ I L+ ++S G ++ P Sbjct: 444 VGSTSSLTPGTIQTGFSMTLIPHIIDSREILLQYSIDLSSLLQLTTISSGTSSIQAPDIS 503 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 V+L SG T+V+AG +D++ + G+ + LG + +++ I + Sbjct: 504 TSNFIQRVKLLSGETLVVAGFDQDNLSAVSNGV-GAADNVALG----SRNGSKKRNMIVV 558 Query: 413 AATPFLVK 420 P L + Sbjct: 559 MIQPNLAQ 566 >gi|297592282|gb|ADI47020.1| PilN [Escherichia coli] Length = 535 Score = 92.5 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 91/274 (33%), Gaps = 20/274 (7%) Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + L+ FL+ + + ++ S + + N QV L V + VR+ Q G + Sbjct: 267 MVLATGFLTVTDTPRVLDTVS-RFVEARNREMRRQVVLNVEVLSVRKTRRDQAGIDWNAV 325 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 S + F + L AL + + + + Sbjct: 326 FSDGRLGLTLGGAFSSAADDIITSGVSIVDGKLTGSKAFLKALSSQGTVSVVTQNSAVTK 385 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGR----- 327 + Q Y ++ +V T G + P + R Sbjct: 386 NMTPVPMQVASQQGYIEGVTTDTTANVGTSTSLNAATITTGFNMTLLPFIQPDARSLQLL 445 Query: 328 --IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L + G + +P+ ++ + T++L SG T++L+G + + +++G+ Sbjct: 446 FSMNLSDKPTFEVFESGGSRAQVPTVDLKTINQTIDLKSGQTVILSGFRQSGSKSVRQGV 505 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P L + ++T + + TP ++ Sbjct: 506 ---GS-PAFFGLGGGTDSGDDDTILVVLITPHVI 535 >gi|284008046|emb|CBA74162.1| conjugative transfer protein lipoprotein PilN [Arsenophonus nasoniae] Length = 534 Score = 92.5 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 44/356 (12%), Positives = 110/356 (30%), Gaps = 25/356 (7%) Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 + ++ + + + + ++ I + S Sbjct: 179 SGQIVIYALETRSFTLNFMDSQTDYQSRVVSGTTSKAGNSGGQSGNALSGDAITSQSTST 238 Query: 144 TV------VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 T+ L G V+++ + ++ ++ N + QV Sbjct: 239 TIKSSLYADLQGAVKSMLTPGLGRMFLSAGNLTVTDVPRVLDTVERFVDERNQTLDRQVV 298 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 L + + V + Q+G + ++ S + FGG + + Sbjct: 299 LNIEVLSVEKRQKDQLGLDWNAVFNNGRLGLSLSQAFGGAAGNIMNGGFSVVDGRLAGSK 358 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TT 309 L AL + + + + T + + Q Y ++ +V T Sbjct: 359 VFLKALAEQAKVSVVTQQSNTTTNLSPVAMQVAEQEDYVAQVTTQSTANVGTATSIQPAT 418 Query: 310 HDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 G ++ P ++ G+ I L G ++ ++ + +++ V++ Sbjct: 419 ITTGFYINLLPNIMPDGQHLLLQFAINLSEPPTRRTFTSGESSVELLNTQLKTFTQRVKM 478 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +G T+VL+G + + K+G+ + P L + + + + TP L Sbjct: 479 KTGQTLVLSGFQQASRKGSKQGV---GQ-PWFFGLGGGQQAEDGDRMLVVLITPVL 530 >gi|33152500|ref|NP_873853.1| putative phage-related secreted protein [Haemophilus ducreyi 35000HP] gi|33148723|gb|AAP96242.1| putative phage-related secreted protein [Haemophilus ducreyi 35000HP] Length = 374 Score = 92.5 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 95/287 (33%), Gaps = 46/287 (16%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 ++ +V D +V +G I ++ + +S V + + G Sbjct: 124 QADGQVFAHGDKLVFYGTPAEISRAKSVL-----------------TSLDTVSKEVVVTG 166 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + EV+ + GS + G + F L+ Sbjct: 167 Y--------VFEVQTQEKE---------GSGINLFAKLLSGKLGINIGIKQSFENFITLN 209 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVT 308 + + ++ + + ++ PTL SG +F+ G K S+ Sbjct: 210 MGNLDAMIELFKSDSRFHVVSSPTLRVKSGSKGNFSVGSDVPVLGSVKYDKEGRAVQSIE 269 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGT 367 GV+ TPTV I LRIQ ++S V + P+ R T + + SG Sbjct: 270 YRTSGVIFDITPTVKRD-AIDLRIQQQLSNFVKTDTGVNNSPTLIKRDIVTDITVKSGEV 328 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 IVL GL ++ + G L KI E+T+I + Sbjct: 329 IVLGGLAENKQTEGNTGFSFLPKI------LTGKSNRSEKTDIIVLL 369 >gi|320102660|ref|YP_004178251.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] gi|319749942|gb|ADV61702.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] Length = 1626 Score = 92.5 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 74/226 (32%), Gaps = 34/226 (15%) Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG-- 282 ++ A FV G +L + A + + P +T +G Sbjct: 1381 NNTEQAATPTLAGFVPGAGATLGVSILSDLEVYLFMRAAQTDVRSNIIQAPKVTTFNGAF 1440 Query: 283 -----QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEV 336 Q+ F + V G+ L+ P + + R + L + Sbjct: 1441 AQVASQTQQFYVASVTPVVAFGAVAFTPDVQPLPIGITLNVQPVITADRRYVRLSLNPVF 1500 Query: 337 SEPVIGV--------------------------NAGDMPSYRVRKADTTVELPSGGTIVL 370 +P++ + +TTV +P GGT++L Sbjct: 1501 ISNASFQQFTVAGGVGGIGGIGGIGGGDGAQIATTIQLPTFTLFTVNTTVTVPDGGTVLL 1560 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 G+ + ++ + G+P+LSK P L LFRN R I + TP Sbjct: 1561 GGVKTSEEERREFGVPVLSKTPYLNRLFRNIGIGRTSRSIMMMVTP 1606 >gi|217425271|ref|ZP_03456766.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 576] gi|217391876|gb|EEC31903.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 576] Length = 349 Score = 92.1 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 101 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 160 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 161 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 220 Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 221 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 280 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 281 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 336 Query: 411 FIAATP 416 I TP Sbjct: 337 VILITP 342 >gi|126441183|ref|YP_001060902.1| Type II secretory pathway, component PulD [Burkholderia pseudomallei 668] gi|126220676|gb|ABN84182.1| type II secretory pathway, component PulD [Burkholderia pseudomallei 668] Length = 448 Score = 92.1 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 75/462 (16%), Positives = 146/462 (31%), Gaps = 67/462 (14%) Query: 1 MRYLQRTFFTMMS--IFLFSSNPSVAKLPPIK--EANAAVINISDVEIGKGKKIS-IGLN 55 M+ T M+ + F P + LP A A + G + + + Sbjct: 1 MKRYGVLIVTAMAYSVAAFGVVPPLPMLPADASLTAAAPTLTPLKHVAGTSFDLRFVTVA 60 Query: 56 KVIILQVPVDVQDVLVSDPTKAD----------------------------VVVHSPRTM 87 +++ L + V P V + + Sbjct: 61 QIVDLIYQEAMHTPYVLGPDVLSDGRLVSFRLDDRNRDVRTVMGDFLESLGFQVVTRNGV 120 Query: 88 YLFGKNVGQA------NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI--ADSNI-RV 138 K G A +V + +++ L LIE I M L + + V Sbjct: 121 DYVTKKPGAAREKVDQDVFVYKPRYRRVDYLRALIEPMIGARAMPLMSPVSVPSQPVGAV 180 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 ++ +T G V + +V+ L G + K V L + +V + Sbjct: 181 QVPGETAAPAGDVP-AMPVETSVQARGDDLVIVGSHDEVALLRKVVPELDTV--PSEVVV 237 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 + + EV T ++ + + + + + Sbjct: 238 RGWVYEVANTDS---------TNTAWSIAVRMLSGQLRVSSGDTSSDASAVRFTGPGVDA 288 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDYG 313 + AL + + ++ P + +SG+ G Q + S+ T S+T D G Sbjct: 289 AISALNADSRFKVVSAPHVRIVSGERVRLNVGQQVPTQSSVSYQGSTGTPVQSITYQDAG 348 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 ++ PTV+ I L+++ E+S+ V P+ R+ T L G +VL G Sbjct: 349 LIFDVEPTVMRE-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGEVVVLGG 407 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 L++D + G L P + +++ TE+ + Sbjct: 408 LIQDRNATARSGYAWL---P---SFLDGRSSSKQRTEVLLVL 443 >gi|187479017|ref|YP_787041.1| type IV pilus assembly protein (partial) [Bordetella avium 197N] gi|115423603|emb|CAJ50142.1| putative type IV pilus assembly protein (partial) [Bordetella avium 197N] Length = 117 Score = 92.1 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P R RKADT VEL G +++GL+ + IPLL +PI+G+ FR+ ++++E+ Sbjct: 2 IPVLRKRKADTMVELGDGEGFMISGLVSRQTKASVNKIPLLGDLPIIGSFFRSVQYSQED 61 Query: 408 TEIFIAATPFLVKPVAMR-DLSRPDDH 433 E+ I P L +P+A L P Sbjct: 62 NELVIVVPPRLRQPIARGVTLPLPGAR 88 >gi|167571699|ref|ZP_02364573.1| Type II secretory pathway, component PulD [Burkholderia oklahomensis C6786] Length = 439 Score = 92.1 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 95/283 (33%), Gaps = 26/283 (9%) Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA----GEDQVT 197 + V + G + + A+ + ++ S + + + +V Sbjct: 168 AGAVQVPGESTSPANDAPAMPIEMGVQARGDDLVIVGSHDEVALLRKVVPELDTAPSEVV 227 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 ++ + EV T ++ + + + + + Sbjct: 228 VRGWVYEVANTDS---------TNTAWSIAVRMLSGQLRVSSGDTSSDTSAVRFTGPGVD 278 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDY 312 + AL + + ++ P + +SG+ G Q + S+ T S+T D Sbjct: 279 AAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQDA 338 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G++ P V+ I +++ E+S+ V P+ R+ T + G IVL Sbjct: 339 GLIFDVEPIVMRE-VIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRMKDGEVIVLG 397 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 GL++D + G L P + +++ TE+ + Sbjct: 398 GLIQDRNATARSGYAWL---P---SFLDGRSSSKQRTEVLLVL 434 >gi|196228122|ref|ZP_03126989.1| peptidase M56 BlaR1 [Chthoniobacter flavus Ellin428] gi|196227525|gb|EDY22028.1| peptidase M56 BlaR1 [Chthoniobacter flavus Ellin428] Length = 1079 Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 86/305 (28%), Gaps = 73/305 (23%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 Q+ ++ E+ + K Q G + Sbjct: 358 PASPQIEIEAKFVEIHSPVAKSSDVQ---------------------AGDAEGQADRPTI 396 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGA 304 F+ ++ +L + + L+ P +T + Q A + + T + Sbjct: 397 FTDPQFQLIIRSLNQKKGVDILSSPRVTTRANQRAVVEAVREFRTPTEWEWRKESGTWKP 456 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------------VIGVNAGDM 348 T T + G+ L P + G + + + V E ++ Sbjct: 457 TKFETKNLGISLEVEPRLGRDGTLEVHAISSVVEFLGFLDLDTGKTILASRTAADGNVEV 516 Query: 349 PSY----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P R+ ++TV L SG T +A L + + E Sbjct: 517 PPVVPGHRSKGIYSERRKESTVNLKSGETFQIADLPETADTKALEK-------------- 562 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 + I + +P L+ P + + D S + ++ + GPK+ Sbjct: 563 -----HASRKRIMVFISPRLIAPASAAAGTGSDATGSPGAQGELVLHGTLD-LNGPKQMV 616 Query: 459 EVEGQ 463 V G Sbjct: 617 AVSGA 621 >gi|262274287|ref|ZP_06052098.1| putative type III secretion system EscC protein [Grimontia hollisae CIP 101886] gi|262220850|gb|EEY72164.1| putative type III secretion system EscC protein [Grimontia hollisae CIP 101886] Length = 489 Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 11/286 (3%) Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKVMNL 187 + + + + + + RA + + + + N Sbjct: 193 FPGAQSLIAAAITNIGQFTNLTDEEMATRAYRVKLSQGEKQALEEDEKSTKVQALPGPNA 252 Query: 188 LNIAGEDQ-VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-DF 245 L + G + V L IA + +Q+ F + ++ ++ D G S G D Sbjct: 253 LLVRGTQEEVKLAKRIAALIDVKRRQLLFSLKVYDIATERKENLGIDGGWVNGSRGIYDI 312 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 V + F AL R++ E L + Q F S Sbjct: 313 VVPPFTETKDFLKNFQALYSNGIARSVYETNLLVLENQQGQFGKKQT--ATLALVSNKQI 370 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLR----IQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + L+ T +L G++ R + E + P + + V Sbjct: 371 QTEKIEADNSLYVTGRLLPSGQVQARVQYVEEALDDEGEESEGSQRPPRVSSQSMTSEVY 430 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + T++L G +Q G+PL+S +P++G LF+ + ++ + Sbjct: 431 IKPDQTVILGGFDNTVTEQRITGVPLISHLPLIGNLFKYTSESKHK 476 >gi|323669655|emb|CBJ94777.1| pilus assembly protein [Salmonella bongori] Length = 560 Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 78/247 (31%), Gaps = 26/247 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------FSV 247 QV L V + V +Q+G +I S + + + G + + Sbjct: 313 RQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNATSASVSILDSAT 372 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 ++ AL + + + Q +Y SS+T T V Sbjct: 373 GSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVAQSSTTTTTDV 432 Query: 308 T--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSY 351 G + P + G + L++ +S+P G + +MP Sbjct: 433 GATTSLTPGMMTTGFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYT 492 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++R L +G +VL G + + + K G +LG + + + Sbjct: 493 KLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLV 548 Query: 412 IAATPFL 418 I TP L Sbjct: 549 IIITPEL 555 >gi|327412816|emb|CAX67822.1| putative pilus assembly protein [Salmonella bongori] Length = 560 Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 78/247 (31%), Gaps = 26/247 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------FSV 247 QV L V + V +Q+G +I S + + + G + + Sbjct: 313 RQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNAASASVSILDSAT 372 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 ++ AL + + + Q +Y SS+T T V Sbjct: 373 GSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVAQSSTTTTTDV 432 Query: 308 T--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSY 351 G + P + G + L++ +S+P G + +MP Sbjct: 433 GATTSLTPGMMTTGFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYT 492 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++R L +G +VL G + + + K G +LG + + + Sbjct: 493 KLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLV 548 Query: 412 IAATPFL 418 I TP L Sbjct: 549 IIITPEL 555 >gi|301019450|ref|ZP_07183622.1| bacterial type II and III secretion system protein [Escherichia coli MS 196-1] gi|299882211|gb|EFI90422.1| bacterial type II and III secretion system protein [Escherichia coli MS 196-1] Length = 358 Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 60/338 (17%), Positives = 112/338 (33%), Gaps = 33/338 (9%) Query: 95 GQANVILIGHDG----KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G N+ + G + + R R S+I VS + G Sbjct: 21 GNMNIRIWTKKGVDFIAPYTPKEPVKPRYTWTYTPQYRSVAYLSDILGGYVSGSFNNSGA 80 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG----EDQVTLKVTIAEVR 206 V + + + S Y + + + D+V + + EV+ Sbjct: 81 VISDDSLKGSSGASNYINRTGDILVYYGTKEDIAILKTLVTSLDTMSDEVVVSGYVFEVQ 140 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 G + S + S A F++ + S + + + L+ Sbjct: 141 TSQSDGSGILLAAKILSDKFNISVGAAGLDNFIN----------IRTGSIDAIFNLLKTD 190 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + ++ P L + SASF+ G TV+++T SV GV+ + TP+ + Sbjct: 191 SRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVLFNVTPS-I 249 Query: 324 SPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + L+IQ ++S V + P+ R T V L G I+L GL + + Sbjct: 250 KSRTMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQKDSKAS 309 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G ++F + +T+I + V Sbjct: 310 SGW----------SVFGSRTSESNKTDIMVMLQVRKVD 337 >gi|126696034|ref|YP_001090920.1| Type II secretory pathway component PulD-like protein [Prochlorococcus marinus str. MIT 9301] gi|126543077|gb|ABO17319.1| Type II secretory pathway component PulD-like protein [Prochlorococcus marinus str. MIT 9301] Length = 572 Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 94/305 (30%), Gaps = 46/305 (15%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI- 209 T + Q + E +L K+ QV L V + +V Sbjct: 251 ATTDERLQTVTMVGEKYLIDLANGFLQKLDIKQ----------KQVALSVKVLDVNMSDK 300 Query: 210 ---LKQIG------FQHSITGSSSGPSKSF------AADFGGKFVSEGGDFSVKGVLDRF 254 +K G F G SF D Sbjct: 301 NSSMKDYGGKLDDAFIIGSQGKIKSAFGSFLPVFPEGNSTDATTNPGINSSQRTTNFDNK 360 Query: 255 SFETVLHALERATAIRTLAEPTLTA---------------ISGQSASFTSGGQHLYKTVS 299 SF +L A + LA PTL G G + Sbjct: 361 SFFGLLEASIENGTTKVLASPTLLLSESSGSAGDGSSIGRKVGNEGFVEIGDKVPVDATK 420 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355 G+ + + GV L + + + V+ N G + R+ Sbjct: 421 GDGGSCTYSFETVGVKLGAKILGIDQNDYVTFTMTPIVTGISGSFNIVGCGSVSKINNRR 480 Query: 356 ADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 DT + + G T+VL G++++ +PLL +P+LG LFR+ + ++++ E+ I Sbjct: 481 LDTGAIRIKDGETLVLTGVIQETDIDTTYKLPLLGDLPLLGGLFRSKQASKDKRELIILV 540 Query: 415 TPFLV 419 TP ++ Sbjct: 541 TPKVL 545 >gi|330862439|emb|CBX72597.1| hypothetical protein YEW_HP33920 [Yersinia enterocolitica W22703] Length = 149 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 6/143 (4%) Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG-LRIQTE 335 + ++ A K + + G +L TP ++ + + + Sbjct: 1 MVTLNNIQAVLDKNVTFYTKL--QGDKVAKLESITSGSLLRVTPRMIDSDGVKEVLLNLN 58 Query: 336 VSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + + ++ +P + T L G +++L G ++D + + IPLL IP Sbjct: 59 IQDGQQQAPLSSSEPLPEIQNSDISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIP 118 Query: 393 ILGALFRNSRFNREETEIFIAAT 415 +LG LFR++ Sbjct: 119 LLGGLFRSTNKQSHSVVRLFLIK 141 >gi|238755356|ref|ZP_04616698.1| hypothetical protein yruck0001_7710 [Yersinia ruckeri ATCC 29473] gi|238706391|gb|EEP98766.1| hypothetical protein yruck0001_7710 [Yersinia ruckeri ATCC 29473] Length = 540 Score = 91.0 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 19/288 (6%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + ++++ + + +N N+ QV L V + V Sbjct: 256 VTNTIKSMLTPDTGRMNLSAGVLTVTDTPRVLEKISRYINERNVELNRQVVLNVQVYSVE 315 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + Q+G +S S F G + + + AL Sbjct: 316 KRTQDQLGIDLDAVFNSGSVGLSLTNAFTGSASNVLSGGVSILDGKGKGSKGFIKALSEQ 375 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318 + + E + + + Q Y + S+ +V +T G + Sbjct: 376 ANVSVMTEASSMTTNLSAVPIQVALQQDYASGVSTQNTANVGSTSTITKSTITTGFNMTV 435 Query: 319 TPTVLSPG-RIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 P ++ ++ L+ +S+ G + ++ R++ V + SG T+VL+ Sbjct: 436 LPFLVPQSPKMQLQFAINISDDPTMRTFSSGDTSVELTKTRLKTFTQRVNMQSGQTLVLS 495 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G ++G+ G L + +T + I TP ++ Sbjct: 496 GYQSLGKTVDRQGV---GSFRFWG-LGGGANGENNKTMLVILITPVIL 539 >gi|149195497|ref|ZP_01872574.1| type II secretion pathway protein XcpQ [Caminibacter mediatlanticus TB-2] gi|149134357|gb|EDM22856.1| type II secretion pathway protein XcpQ [Caminibacter mediatlanticus TB-2] Length = 336 Score = 90.6 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 77/213 (36%), Gaps = 19/213 (8%) Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 I V + +++G + + D ++ + +F++ ++ Sbjct: 104 ITAVNNNKARKLGVKLDFNNPFKNILLNIVTDTA----------TISTLPSGVNFQSFIN 153 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGV 314 L +T+ +PTL I + S + S + T + D G+ Sbjct: 154 FLNSKNIAQTIDKPTLRLIDSHNYVLESVHSIPFTETSVTIDKNGNPVTKTDLKYKDIGL 213 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSGGTIVLAGL 373 ++ +S I + V V + + P + +T ++L + ++AGL Sbjct: 214 KIYIKNVFISKNSIDFDLDIYVQNIV-SILQNNQPVVDTKHFNTHIQLTKKNCSYLIAGL 272 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + +P+L +P +G LFR+S + + Sbjct: 273 RSVSTISQNKKVPVLGDLPFVGLLFRSSDKSVQ 305 >gi|167950797|ref|ZP_02537871.1| type IV pilus secretin PilQ [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 263 Score = 90.6 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 75/227 (33%), Gaps = 45/227 (19%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 +++ L+I QV ++ I D K +G + T S+S S G Sbjct: 38 RLLQRLDIPVR-QVLIESRIVIANNDFTKALGVRFGATTSASAGSNEALIAGGMPGHISS 96 Query: 236 ------------------------------------GKFVSEGGDFSVKGVLDRFSFETV 259 G + G + + + Sbjct: 97 FGIDKGTFMTTTTGQPIAAGIEIPAGSGNEALMVNLPATAPSGAINFLVGKVGSYLLQLE 156 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A++ ++ P + A+ G + Y+ +SS GATSV+ + + L T Sbjct: 157 LSAMQSEGKGEVISSPRVITSDQNKATIKQGVEIPYQEATSS-GATSVSFKEAVLKLDVT 215 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 P + RI + ++ P + +P RK +TTV + +G Sbjct: 216 PHITPDDRIRMDLEINKDSPDFSRSVLGVPPLDTRKIETTVLVDNGE 262 >gi|71901990|ref|ZP_00684038.1| general secretory pathway protein D precursor [Xylella fastidiosa Ann-1] gi|71728245|gb|EAO30428.1| general secretory pathway protein D precursor [Xylella fastidiosa Ann-1] Length = 106 Score = 90.6 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R+ T + SG TI+LAGL+ + + G+P LSK+PI+G LF N E Sbjct: 8 QINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRRE 67 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSV 436 I + TP +V+ ++ D YS Sbjct: 68 IIVLLTPEIVR--NPQEARNLTDEYSQ 92 >gi|225677418|ref|ZP_03788385.1| type II secretion system protein, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590562|gb|EEH11822.1| type II secretion system protein, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 500 Score = 90.6 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 86/267 (32%), Gaps = 48/267 (17%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++ +N + QV ++ I EV D G + Sbjct: 240 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLQDGTKSII 289 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295 + ++ ++ L++ ++ P + AI+ Q A + H+Y Sbjct: 290 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 349 Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345 S+ T T + + GVVL P++ I + I +S Sbjct: 350 DIQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDIE 409 Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 D+P +R+ ++ +++ SG +V+ GL++ + LL + Sbjct: 410 YVAQQSKMKLNSDIPIVEIREMNSMLKIKSGEVMVIGGLIEHREDKQS----LLHQ---- 461 Query: 395 GALFRNSRFNREET--EIFIAATPFLV 419 ++ R E I +V Sbjct: 462 ----KSKRLANNIRTVETVIFLKATIV 484 >gi|332091472|gb|EGI96557.1| general secretion pathway protein D domain protein [Shigella boydii 3594-74] Length = 93 Score = 90.6 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L TP + + + I+ EVS+ + + + RK TTV G IVL GL+ Sbjct: 1 MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D + +PLL IP++G LF+++ +E Sbjct: 59 DDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 90 >gi|325529072|gb|EGD06072.1| putative type II secretory pathway [Burkholderia sp. TJI49] Length = 220 Score = 90.2 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 18/183 (9%) Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSP----------------GRIGLRIQTEVSEPVIGV 343 +S+ + G + TP ++ + + I + V G Sbjct: 5 QGYQDSSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGSPASNPQSVMMSIDIQDGNIVPGQ 64 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 ++P + R T + G ++++AG D++ K G+P LS IP++G LF+ + Sbjct: 65 AVSNVPVIQQRNIVTKTMIDEGRSLLIAGFNDDEVHLNKSGVPWLSDIPLIGNLFKYTDK 124 Query: 404 NREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + E F TP +V + D S + DA R + Sbjct: 125 SGNHMERFYLLTPRVVSTASMYAPDGSPVNPGVDAPADASGVSMYRPPDNDIAVPLTPQP 184 Query: 462 GQN 464 Sbjct: 185 LPG 187 >gi|91791253|ref|YP_552203.1| type II and III secretion system protein [Polaromonas sp. JS666] gi|91701134|gb|ABE47305.1| type II and III secretion system protein [Polaromonas sp. JS666] Length = 556 Score = 90.2 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 99/289 (34%), Gaps = 32/289 (11%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-----VTLKVTIAEVRRDI 209 Q A ++S + + + + +KV + + ++Q V++ V + V Sbjct: 273 QMLSNAGKVSASPATGTITVTDTPAVMEKVAD--FVTAQNQALNRLVSVNVRVLSVEISE 330 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSFETVLHAL 263 G ++ + ++ F + G ++ +L AL Sbjct: 331 GDDYGINWDAVYANLSAANPYSLALKTAFPTATGAGNLIISAPAGSNSRWAGSSAMLSAL 390 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVV 315 + L TL ++ Q A G + Y SS T +V + G Sbjct: 391 SMQGRVSELTSATLVTLNNQPAPVNVGRKVSYLASSSQTQTANVGSTVSLTPGVIQTGFS 450 Query: 316 LHFTPTVLSPGRIGLRIQTEV------SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + P ++ + L+ ++ + G ++ P V L SG T+V Sbjct: 451 MTIVPHIIDGNELLLQYSLDLSSLLKLNTISSGTSSIQAPDVATSNFIQRVRLKSGETLV 510 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +AG +D++ + G+ ++ +LG + + + + + P + Sbjct: 511 VAGFDQDNLTAVANGV-GAAENKLLG----SRTGSTKRQILVVLIQPNI 554 >gi|58698373|ref|ZP_00373287.1| type II secretion system protein, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225630071|ref|YP_002726862.1| type II secretion system protein, putative [Wolbachia sp. wRi] gi|58535127|gb|EAL59212.1| type II secretion system protein, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225592052|gb|ACN95071.1| type II secretion system protein, putative [Wolbachia sp. wRi] Length = 500 Score = 90.2 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 48/267 (17%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++ +N + QV ++ I EV D G + Sbjct: 240 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLRDGTKSII 289 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295 + ++ ++ L++ ++ P + AI+ Q A + H+Y Sbjct: 290 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 349 Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345 S+ T T + + G+VL P++ I + I +S V Sbjct: 350 DIQKDTRNSNQTLITKMNSVPIGIVLIIHPSINIDTSEIFMDIHPTLSRINGYVKDPDIE 409 Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 D+P +R+ ++ +++ SG +V+ GL++ + LL + Sbjct: 410 YVAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQS----LLHQ---- 461 Query: 395 GALFRNSRFNREET--EIFIAATPFLV 419 ++ R E I +V Sbjct: 462 ----KSKRLANNIRTVETVIFLKATIV 484 >gi|323970458|gb|EGB65719.1| R64 PilN family protein type IVB pilus formation outer membrane protein [Escherichia coli TA007] Length = 336 Score = 90.2 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 77/242 (31%), Gaps = 19/242 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L V + VR+ Q G + S + F Sbjct: 99 RRQVVLNVEVLSVRKTRRDQAGIDWNAVFSDGRLGLTLGGAFSSAADDIITSGVSIVDGK 158 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 + L AL + + + + + Q Y ++ +V Sbjct: 159 LTGSKAFLKALSSQGTVSVVTQNSAVTKNMTPVPMQVASQQGYIESVTTDTTANVGTSTS 218 Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 T G + P + R + L + G + +P+ ++ + Sbjct: 219 LNAATITTGFNMTLLPFIQPDARSLQLLFSMNLSDKPTFEVFESGGSRAQVPTVDLKTIN 278 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T++L SG T++L+G + + +++G+ P L + ++T + + TP Sbjct: 279 QTIDLKSGQTVILSGFRQSGSKSVRQGV---GS-PAFFGLGGGTDSGDDDTILVVLITPH 334 Query: 418 LV 419 ++ Sbjct: 335 VI 336 >gi|320107861|ref|YP_004183451.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] gi|319926382|gb|ADV83457.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] Length = 638 Score = 90.2 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 59/357 (16%), Positives = 104/357 (29%), Gaps = 71/357 (19%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHG-MVRTIQDSQRAVELSET----------FLSQ 170 L R + I V S VV+ G + EL+ + Sbjct: 278 DLANMTRALFGLTQIAVNTQSGAVVIRGPQAVVHRVHDLFTELASRTSDILFDINIYEVD 337 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK--------QIGFQHSITGS 222 + + +++A Q + + + S Sbjct: 338 KSTTRNIGFAPPTSATAIDVASTAQKLI-------SDNQSLLSQSISSGALTLSGSTYDQ 390 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF------ETVLHALERATAIRTLAEPT 276 A S G D T L+ L +T R L Sbjct: 391 ELQEVAFLVAAGVSGSSSFTSILGTLGSFDGIPLLGISMSSTSLNMLLNSTDARMLNALQ 450 Query: 277 LTAISGQSASFTSGGQHLYKTVSSST--------------------------------GA 304 L + Q +F G ++ T +++ Sbjct: 451 LRSSDRQEVTFRVGSRYPILTAITTSASSSDVANELAAAGVSSSVIAQLTGSSGSGSTST 510 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + D G+ L TP VL G + L + ++ G D+P R + V +P Sbjct: 511 PQIQFEDIGLTLKITPRVLRSGEVQLDLDFKLESLA-GTGVDDIPILNNRALKSVVTIPP 569 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419 G T +LA L+ + + +G+P L +P F+++ N + + E+ I TP +V Sbjct: 570 GETTMLAALVSTNETKALDGVPGLDNLPG----FQSTDRNADGAKDELLITVTPHIV 622 >gi|58696766|ref|ZP_00372303.1| type II secretion system protein, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58537040|gb|EAL60176.1| type II secretion system protein, putative [Wolbachia endosymbiont of Drosophila simulans] Length = 495 Score = 90.2 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 48/267 (17%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++ +N + QV ++ I EV D G + Sbjct: 235 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLRDGTKSII 284 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295 + ++ ++ L++ ++ P + AI+ Q A + H+Y Sbjct: 285 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 344 Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345 S+ T T + + G+VL P++ I + I +S V Sbjct: 345 DIQKDTRNSNQTLITKMNSVPIGIVLIIHPSINIDTSEIFMDIHPTLSRINGYVKDPDIE 404 Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 D+P +R+ ++ +++ SG +V+ GL++ + LL + Sbjct: 405 YVAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQS----LLHQ---- 456 Query: 395 GALFRNSRFNREET--EIFIAATPFLV 419 ++ R E I +V Sbjct: 457 ----KSKRLANNIRTVETVIFLKATIV 479 >gi|168701297|ref|ZP_02733574.1| hypothetical protein GobsU_17361 [Gemmata obscuriglobus UQM 2246] Length = 1374 Score = 89.4 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 79/239 (33%), Gaps = 38/239 (15%) Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 I +S + ++ + GG L+ T L + + P LT Sbjct: 1118 IRATSFNRAIPGFGNYPNTPGNNGGISLGLAFLNDIQVYTFLEMAQGDQRSNIMQAPKLT 1177 Query: 279 AISGQSASFTS----------------------GGQHLYKTVSSSTGATSVT------TH 310 +GQ+A+ T Q + T + +V Sbjct: 1178 MFNGQTATLTVAETQFFVTNVQVVSVNGQIVFIPQQQQLPSSGQGTLSITVQAVVSADRR 1237 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR----------KADTTV 360 + L V + + L T PV + P + TTV Sbjct: 1238 FVRLNLPVQLGVQAGAAVPLFPITTFITPVFEGGSQGQPIPFTQFLQQPSFTLLDIQTTV 1297 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P GGT++L GL + + + G P LSKIP L LF+N RE T + I TP ++ Sbjct: 1298 VCPDGGTVLLGGLKRLSESRNEFGPPFLSKIPYLNRLFKNVGVGRETTHLMIMVTPRII 1356 >gi|70732014|ref|YP_261759.1| type IV pilus protein, PilN [Pseudomonas fluorescens Pf-5] gi|68346313|gb|AAY93919.1| type IV pilus protein, PilN [Pseudomonas fluorescens Pf-5] Length = 613 Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 83/280 (29%), Gaps = 26/280 (9%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRR 207 V+ + +Q A + + + + ++ + L QV V I EV Sbjct: 287 VKAMLSTQPAGRIFLSRSTGTLTVSDRPEVLNRIASYLQSTNRNITRQVLFNVKIFEVNF 346 Query: 208 DILKQIGFQHSITGSSSGPSKSFA-----ADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 Q S + A +S V+ A Sbjct: 347 TDRDQTAVNWKAVYKSVSGRWGLSLANKVAGISTDAISGSVSILDTSSSPWAGSSAVIQA 406 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGV 314 L I + P++T ++ Q A G Y SS+T SV T G Sbjct: 407 LSEQGRISDVRSPSITTLNLQPAPIQIGNVKSYVASSSTTTTASVGSSTSLTPATITSGF 466 Query: 315 VLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + P ++ I + + + ++ + + A V L SG T+ Sbjct: 467 NMMLLPKIIDRDNMLLMISISMSSKPTFTTFTSNGSSVQTADFDTKNAAPKVLLRSGQTL 526 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 VL G ++ K G+ G L + + + + Sbjct: 527 VLTGFEENTENADKTGV---GDASFFG-LGGSRTRSSDHS 562 >gi|50119484|ref|YP_048651.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] gi|49610010|emb|CAG73449.1| putative Type IV pilus protein [Pectobacterium atrosepticum SCRI1043] Length = 554 Score = 89.0 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 82/254 (32%), Gaps = 23/254 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + ++ LN+ V L V++ V+R Q S+ G A + Sbjct: 306 ESYIDSLNVRMNRMVKLMVSVYSVQRKGSSQTSLDWSVVGKRLDRFGLTLAGTPTATTAV 365 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + ALE + + T + A F GQ +Y + Sbjct: 366 SSAGINVVDGKFAGTTALFRALETQGKVSVVMAHEATTTNLVPAPFQIAGQMVYLRSQKT 425 Query: 302 TGATSVTT-------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAG 346 + + + T G + P + G I L+ S+P G Sbjct: 426 SVSENYATTDMEPGSITTGTQMTLLPDIRDEGDIQLQFNFSHSDPAQLRKESSKDGNTKM 485 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFN 404 +MP VR V L G T++++G ++ +EG P + + G Sbjct: 486 EMPYTTVRSLSERVNLKPGQTLIVSGYNSRNLTASREGAFDP---DVTVAG---GGKSSE 539 Query: 405 REETEIFIAATPFL 418 ++ + IA TP L Sbjct: 540 TDDVTLIIAVTPVL 553 >gi|195953100|ref|YP_002121390.1| Type II secretory pathway component PulD-like [Hydrogenobaculum sp. Y04AAS1] gi|195932712|gb|ACG57412.1| Type II secretory pathway component PulD-like [Hydrogenobaculum sp. Y04AAS1] Length = 488 Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 76/232 (32%), Gaps = 24/232 (10%) Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 ++L + +++ + ++ + L +++ +L+ALE+ Sbjct: 250 NLLNEYSTGINLSALFQHLKNLNLSLTAPITLTNPSNSLFNAGLSGSNYDALLNALEQYG 309 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------------STGATSVTTHDYGV 314 +++ T T + Q + Y + + V+ + G Sbjct: 310 KTKSIDSETYTVLPNQPIVYAPTNTQSYISSYNIYIPPTVAGVVSTPAYIPIVSYLNTGT 369 Query: 315 VLHFTPTVLSPGRIGLR-----------IQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 + P + + ++ + ++ P + + T L Sbjct: 370 SITILPRLANNKKLMVDVYYSQNTPQNLNTQNITISQGVTVPIQFPEVSSQNSVLTSVLK 429 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 G TI L + D + + GIP L +IP++ LF N+ + + I T Sbjct: 430 PGQTIALISSVYDLKKNNEAGIPFLIRIPLIKYLFGNTDKYSNKVQFIITIT 481 >gi|330890298|gb|EGH22959.1| general secretion pathway protein D [Pseudomonas syringae pv. mori str. 301020] Length = 356 Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 72/225 (32%), Gaps = 26/225 (11%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + T + + ++V++ L+ QV ++ I EV D Q G Q Sbjct: 133 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 191 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G + G G ++ G+ + + + Sbjct: 192 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 251 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + ++AS G + T +S+ +V + G Sbjct: 252 ALKSKGGSNVLSTPNLLTLDNEAASIFFGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 311 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 + L+ P + G + L I EVS + R DT Sbjct: 312 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDT 356 >gi|284006612|emb|CBA71873.1| phage secreted protein [Arsenophonus nasoniae] Length = 334 Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 73/203 (35%), Gaps = 10/203 (4%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 GS + G + ++ ++ + + ++ + ++ PTL Sbjct: 138 GSGINLLAKLLSGKLGINIGIKQNYENFITINTGNLDAMIELFRTDSRFHVVSSPTLRVK 197 Query: 281 SGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SG +F+ G T SV GV+ PT + I L+IQ ++S Sbjct: 198 SGSKGNFSVGSDVPVLSSVTYQDGRPVQSVEYRSSGVIFDIQPT-IKSQAIDLKIQQQLS 256 Query: 338 EPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 V P+ R T V + SG IVL GL ++ +++ G L P Sbjct: 257 NFVKTDTGVNQSPTLIKRDIVTDVTVKSGDVIVLGGLAENKLEEGGTGFSFL---P--KG 311 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 +R +T+I + ++ Sbjct: 312 FLSGKSTSRTKTDIVVLLQVKVI 334 >gi|161789259|ref|YP_001595645.1| hypothetical protein BMSA_0058 [Vibrio sp. 23023] gi|161761384|gb|ABX77030.1| Hypothetical protein BMSA_0058 [Vibrio sp. 23023] Length = 503 Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 57/345 (16%), Positives = 106/345 (30%), Gaps = 31/345 (8%) Query: 91 GKNVGQA-NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLH 148 GK G N + G ++ + L+ + + + L Sbjct: 174 GKATGSDQNPHVEGQFINVAYKNVDVVSDIATGIRAILKADPKNGPDTETTKTTGDSSLV 233 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G V+ I + ++N QV L + + E R + Sbjct: 234 GEVQVIPSLSSI---------SVRTTPERMRKVESLVNRYQRELSKQVLLNIQVLEFRSN 284 Query: 209 ILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + + G + + ++ G + F + G + KGV + + LE+ Sbjct: 285 LGHEKGIDWNVVRNTAHGALQFFIPGTNTVSLDAGYGLAFKGVGQWNGTNSFIKVLEKQG 344 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------GVVLHFTP 320 + T T ++ Q A + Y + SS + V + GV + TP Sbjct: 345 TVSTKTPVTALVLNNQPARISQTLTKPYLSNISSESSEGVVSSSVTRDKQTEGVDMMVTP 404 Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE--LPSGGTIVLAGLLK 375 V + RI ++ S+ VN + R++ T L G T V+ + + Sbjct: 405 NVKNQFVWLRISGKLTKIASDHTEDVNNIKLRFLDTRESQITFTNKLRYGQTYVIGSVKQ 464 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + LS LG + + E + TP V Sbjct: 465 TSTTAERNESFWLS---WLGGM-GSKVDTV---ETLVLLTPTRVD 502 >gi|167564548|ref|ZP_02357464.1| Type II secretory pathway, component PulD [Burkholderia oklahomensis EO147] Length = 400 Score = 88.3 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 86/257 (33%), Gaps = 20/257 (7%) Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA----GEDQVT 197 + V + G + A+ + ++ S + + + +V Sbjct: 150 AGAVQVPGEPISPASDAPAMPIETGVQARGDDLVIVGSHDEVALLRKVVPELDTAPSEVV 209 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 ++ + EV T ++ + + + + + Sbjct: 210 VRGWVYEVANTDS---------TNTAWSIAVRMLSGQLRVSSGDTSSDTSAVRFTGPGVD 260 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDY 312 + AL + + ++ P + +SG+ G Q + S+ T S+T D Sbjct: 261 AAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQDA 320 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G++ PTV+ I +++ E+S+ V P+ R+ T + G IVL Sbjct: 321 GLIFDVEPTVMRE-VIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRMKDGEVIVLG 379 Query: 372 GLLKDDIQQLKEGIPLL 388 GL++D + G L Sbjct: 380 GLIQDRNATARSGYAWL 396 >gi|261819950|ref|YP_003258056.1| type IVB pilus formation outer membrane protein, R64 PilN family [Pectobacterium wasabiae WPP163] gi|261603963|gb|ACX86449.1| type IVB pilus formation outer membrane protein, R64 PilN family [Pectobacterium wasabiae WPP163] Length = 554 Score = 87.9 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 81/254 (31%), Gaps = 23/254 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + ++ LN+ V L V++ V+R Q S+ A S Sbjct: 306 EGYIDNLNVRMNRMVKLMVSVYSVQRKGSSQTSLDWSVVAKRLDRFGLTLAGTPTATTSI 365 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + ALE + + T + A F GQ +Y + Sbjct: 366 SSAGINVIDGKFAGTTALFRALETQGKVSVVMAHEATTTNLVPAPFQIAGQMVYLRNQKT 425 Query: 302 TGATSVTT-------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAG 346 T + + T G + P + G I L+ S+P G Sbjct: 426 TVSENYATTDMEPGSITTGTQMTLLPDIRDEGDIQLQFNFSHSDPAQLRKESSEDGRTKM 485 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFN 404 +MP VR V L G T++++G ++ +EG P + + G Sbjct: 486 EMPYTTVRSLSERVNLRPGQTLIVSGYNSRNLTTSREGAFDP---DVTVAG---GGKSSE 539 Query: 405 REETEIFIAATPFL 418 ++ + IA TP L Sbjct: 540 TDDVTLIIAVTPVL 553 >gi|259909855|ref|YP_002650211.1| Type IVB pilus formation outer membrane protein [Erwinia pyrifoliae Ep1/96] gi|224965477|emb|CAX57009.1| Type IVB pilus formation outer membrane protein [Erwinia pyrifoliae Ep1/96] gi|283479947|emb|CAY75863.1| Outer membrane lipoprotein bfpB; Bundle-forming pilus B; Flags: Precursor [Erwinia pyrifoliae DSM 12163] Length = 548 Score = 87.9 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 87/248 (35%), Gaps = 22/248 (8%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGG 243 +N NI QV L V + V + ++G ++ S G S + A + + GG Sbjct: 303 VNERNIELNRQVMLNVQVYSVEKQQSDRLGIDWKAVFKDSLGLSFTNAYTEASEAMMSGG 362 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + G S + AL + + L + + + + Q Y + +S+ Sbjct: 363 VSIIDGKGKGSS--AFIKALAQQANVSMLTQASSMTTNLSAVPIQVALQQDYASNASTEN 420 Query: 304 ATSV--------TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDM 348 +V +T G + P ++ I + + + + + ++ Sbjct: 421 TANVGSSSSISKSTITTGFNMTVLPYLIPHTSRMQLQFAINMSDEPTIRKFTSENTSVEL 480 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R++ + V + SG T+VL+G +G+ AL + + + Sbjct: 481 MKTRLKTFNQRVIMSSGQTLVLSGYQSMSNTANHQGV---GSSHFF-ALGGGAEGDVNRS 536 Query: 409 EIFIAATP 416 + I TP Sbjct: 537 TLVILITP 544 >gi|149925851|ref|ZP_01914115.1| type II and III secretion system protein [Limnobacter sp. MED105] gi|149825968|gb|EDM85176.1| type II and III secretion system protein [Limnobacter sp. MED105] Length = 531 Score = 87.9 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 81/256 (31%), Gaps = 31/256 (12%) Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------GGDFSVKGVLD 252 + +V + +G + + + G + + + G + + Sbjct: 241 VLQVDLNDSNNMGVRWELYKAGGGINTAPDSSIAGASSTADRITQLTRTASGIETLIFGE 300 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 FS ++ L+ ++TL++P + ++G + + G + + S V Sbjct: 301 NFSTNFLIDFLKSQGDVKTLSQPKIGLMNGTNGNIRVGQSTTFVSRVGSQIVNGVAQSTA 360 Query: 308 --TTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G+ + T I + + ++P R+ T V Sbjct: 361 DTQNLRTGLEVSLTGEAHDSTIYTRINISITELLALKRFTALGVDLNLPEVADRELKTQV 420 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G TI+L G+ Q + L R+ + ++TE+ + P L+ Sbjct: 421 RCRPGDTILLGGITVSRAQDDFQS--GLGT--------RSRTESTKQTELVVTIRPRLLL 470 Query: 421 PVAMRDLSRPDDHYSV 436 + +L +P Sbjct: 471 FGEVAELEQPAAKIKR 486 >gi|310765449|gb|ADP10399.1| Type IVB pilus formation outer membrane protein [Erwinia sp. Ejp617] Length = 548 Score = 87.9 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 87/248 (35%), Gaps = 22/248 (8%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGG 243 +N NI QV L V + V + ++G ++ S G S + A + + GG Sbjct: 303 VNERNIELNRQVMLNVQVYSVEKQQSDRLGIDWKAVFKDSLGLSFTNAYTEASEAMMSGG 362 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + G S + AL + + L + + + + Q Y + +S+ Sbjct: 363 VSIIDGKGKGSS--AFIKALAQQANVSMLTQASSMTTNLSAVPIQVALQQDYASNASTEN 420 Query: 304 ATSV--------TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDM 348 +V +T G + P ++ I + + + + + ++ Sbjct: 421 TANVGSSSSISKSTITTGFNMTVLPYLIPHTSRMQLQFAINMSDEPTIRKFTSENTSVEL 480 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R++ + V + SG T+VL+G +G+ AL + + + Sbjct: 481 MKTRLKTFNQRVIMSSGQTLVLSGYQSMSNTANHQGV---GSSHFF-ALGGGAEGDVNRS 536 Query: 409 EIFIAATP 416 + I TP Sbjct: 537 TLVILITP 544 >gi|242279172|ref|YP_002991301.1| type II secretory pathway component PulD-like protein [Desulfovibrio salexigens DSM 2638] gi|242122066|gb|ACS79762.1| Type II secretory pathway component PulD-like protein [Desulfovibrio salexigens DSM 2638] Length = 497 Score = 87.9 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 80/251 (31%), Gaps = 31/251 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTI--AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 K + LN QV L V + E+ R+ +GF + S S + Sbjct: 253 GKYIKSLNTKMGRQVALAVKVWALEMNRNA--DVGFDIESMLKAGQSSFSMLGGQPYTTL 310 Query: 240 SEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 S G + + + +L AL++ L + ++ Q+ + Y Sbjct: 311 SGAGTLTAAILDGNWKDTKLMLRALKQRGRTTLLTSGSGIVMNNQALPVQVVKRDTYLAG 370 Query: 299 SSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVN 344 SST + G + P +++ + L+ +S E G Sbjct: 371 ISSTTTENSMQTSELTPGEVSTGFSMTVIPHIMNNRKAILQYNITLSSLDSMDEFTSGDL 430 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P R V++ G T+VLAG ++ QQ K +G Sbjct: 431 TIQLPQVSTRSFSQRVKMKCGQTLVLAGFEQETDQQSK----------GIGISAGGHSQK 480 Query: 405 REETEIFIAAT 415 ++ I T Sbjct: 481 YGKS--LIIIT 489 >gi|290243131|ref|YP_003494801.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] gi|288945636|gb|ADC73334.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] Length = 611 Score = 87.5 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 60/380 (15%), Positives = 120/380 (31%), Gaps = 41/380 (10%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + + A ++ VE ++L R I + + EL E + Q + Sbjct: 132 GSVGDLIEALEAVRDVAVEYRGGHLLLRSDSRYILSAPQNEELVERLVEQIEDLGGSAVR 191 Query: 181 SKKVMNLLNIAGE-------DQ-----------VTLKVTIAEVRRDILKQIGFQHSITGS 222 + ++ +Q V L++ + +VR + ++ GF + Sbjct: 192 GELDAGVITYRAAPNAHEDIEQYVERAARNAAVVHLQLALLDVRLNREERKGFNWNELAV 251 Query: 223 SSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G + + G+ ++ + + S VL+AL T + TLT ++ Sbjct: 252 RMGSLVNTDVEQLGEMLTFTRQGVGAEVQRNDVSVTAVLNALSEYGDATTEQDITLTTVA 311 Query: 282 GQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPG------- 326 G SGG+ + +T SV T G+ + TP + Sbjct: 312 GSEVDMRSGGEIPFVGDLDTTVSGESNIRSGASVDTQSVGIEVAITPRYDASTDLVTSSI 371 Query: 327 RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L ++ E +G+ G + P + L G ++ G+ D + Q Sbjct: 372 DMDLTDVVQIREFDVGLEGGTLSHPELQDLSFTNISRLRPGEATLIGGIAYDQVDQDFTS 431 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 + L A + R + + +FI P + D P + D Sbjct: 432 LAGLED-----AKAGSQRISTDRHAMFILLRPTVTVFTDEGDDLLPLPGTARACDTSVVS 486 Query: 445 FNRVNKIYGPKEASEVEGQN 464 ++ A G + Sbjct: 487 IGEDEELVETTAAYFRSGSD 506 >gi|293602243|ref|ZP_06684692.1| PilN family type IV pilus biogenesis protein [Achromobacter piechaudii ATCC 43553] gi|292819386|gb|EFF78418.1| PilN family type IV pilus biogenesis protein [Achromobacter piechaudii ATCC 43553] Length = 582 Score = 87.5 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 82/249 (32%), Gaps = 27/249 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT----GSSSGPSKSFAADFGGKFVSEGGDFSVK 248 Q +T+A V+R G + + G + + A S Sbjct: 318 TRQALFNITVAVVQRTETDDQGLDLTAVYKSLNGNYGITVANAFTAASSAGSASIGILDT 377 Query: 249 GVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 F + +L AL + + +P++T ++ Q Q Y S+T Sbjct: 378 ATGTAGQFAGSKAILRALSSQGRVSIVTQPSVTTLNYQPVPVQVAKQTSYLAAVSNTATA 437 Query: 306 SVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSY 351 V T G + P ++ ++ L+ +S G N+ ++P Sbjct: 438 QVGSTSALTPGTVTTGFSMDLLPFMIDSEQMLLQFTMNLSTDPRLRTVTSGDNSIEVPEV 497 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE-I 410 R V L SG T++L+G ++ + + G+ S L E + Sbjct: 498 DSRIFSQRVRLRSGQTLILSGFEQNVDRGNRSGMFSPSN-----WLTGGGGSTNNRREVV 552 Query: 411 FIAATPFLV 419 I TP ++ Sbjct: 553 VILITPIVL 561 >gi|253688457|ref|YP_003017647.1| type II and III secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755035|gb|ACT13111.1| type II and III secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 388 Score = 87.5 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 92/238 (38%), Gaps = 20/238 (8%) Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 L++I D+V + + E++ + G Q + + +S + S+ + Sbjct: 167 LIDIRA-DEVVVSGYVYEIQTNSRDGSGLQLAASLLNSKLNFQIGG-------SDSRGYE 218 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + S ++ + T T++ PTL SG +A F+ G +S G ++ Sbjct: 219 NFLKISSGSMNALVELFKTDTRFSTVSAPTLRVRSGANAVFSVGNSTPTLGSTSFQGQSA 278 Query: 307 VT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVEL 362 + D GV+ +P + I LRI+ E+S N D P+ R+ T + L Sbjct: 279 IQSVVYRDAGVIFDVSP-AVRLDAIDLRIRQELSNFTSTQNGVNDSPTLIKREISTDISL 337 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G I+L GL D G L F + + ++T+I I ++ Sbjct: 338 SDGDIILLGGLADDKKTASGTGFSWLPS-------FTSQGSSADKTDIVIVLQVRKIR 388 >gi|238796228|ref|ZP_04639738.1| Type II secretory pathway, component PulD [Yersinia mollaretii ATCC 43969] gi|238719921|gb|EEQ11727.1| Type II secretory pathway, component PulD [Yersinia mollaretii ATCC 43969] Length = 555 Score = 87.1 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 86/276 (31%), Gaps = 28/276 (10%) Query: 169 SQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAE--VRRDILKQIGFQHSITGSS 223 + S S +V + A + QV +KV + V R+ Q Sbjct: 275 NTSITVTAPASVVDRVGRQIQEANKQLLRQVAIKVDVYSFNVDRNSNWQFDLTAKFKTGV 334 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + A G S + VL+ LE+ + + +T +SGQ Sbjct: 335 AQYGVGSTAMLSDGSNLVGSLTSSITGGRFDGSKAVLNMLEQNGDVSVVTTANVTTMSGQ 394 Query: 284 SASFTSGGQH-------LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + + +T + G ++ P V+ G++ ++ + Sbjct: 395 PVPVQVSNSRGYVSAVKVEMNDNKTTTTAESSMVTAGFSMNILPNVMDDGKVLMQYNMNI 454 Query: 337 SEPVIGVNAG------------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 S V N +P+ R + + +G T+V+AG + G Sbjct: 455 STLVGKDNGFETVIIDNNGTKMQLPNVDQRSFIQSGMVNNGSTLVMAGFEQVLNNSGDSG 514 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +LG N + + + I TP ++ Sbjct: 515 Q-GSANFKLLG---GNRKGQQSREILVICITPVVLD 546 >gi|240142427|ref|YP_002966937.1| putative type IVB pilus formation outer membrane protein [Methylobacterium extorquens AM1] gi|240012371|gb|ACS43596.1| putative type IVB pilus formation outer membrane protein [Methylobacterium extorquens AM1] Length = 601 Score = 87.1 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 85/301 (28%), Gaps = 50/301 (16%) Query: 165 ETFLSQSGRNQYANSSSKKVMNL-------LNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 F +++ V+ + QV L + + V + Sbjct: 294 GRFEISPATGTLTVTATPNVVQRVQEYADVMRKRMNGQVALSIQVLNVSLEDADSFDNNV 353 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF----------------SFETVLH 261 + S F + S G L+ + + + Sbjct: 354 AALFLGSNKGAFALGRRSPGFNASDPRSSTIGNLNSATPSLGYAILDPTSPFANTQGAIS 413 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----------SVTTH 310 AL + + +LT ++G + + ++T T T Sbjct: 414 ALAERGNVSVVTSASLTTVNGSPVPLQVVNKRNFVKNVTNTQGTGLSTGVASTTIQTDTV 473 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTV 360 G L P ++ G + L+ +SE + + +P+ R Sbjct: 474 STGFNLQMVPRIMQDGNVLLQYGMNISELVGREDGFDTFTVNGSTVQLPNVNQRNFVQQS 533 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE-IFIAATPFLV 419 +P+ T+VLAG ++G+ P L R ++ E + I TP L+ Sbjct: 534 IVPNRSTLVLAGFETARSTSSQQGV---GD-PR-NWLLSGGRTSKNRREVVVILITPTLL 588 Query: 420 K 420 Sbjct: 589 D 589 >gi|224373205|ref|YP_002607577.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH] gi|223589165|gb|ACM92901.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH] Length = 396 Score = 87.1 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 20/210 (9%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + K+IG +I + S + +F + L Sbjct: 172 INNKKAKEIGTDLNIKSPFHSSALFDLVTDTAVVSSSITN----------NFSAFIKFLN 221 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLH 317 A T+++PT+ I + + S Y T S +T T + D G+ ++ Sbjct: 222 SKGAAETISKPTILLIDSSNYTLESVHSIPYVTKSVTTDKDGNPVTQTDLKYKDVGLKIY 281 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT-IVLAGLLKD 376 ++ I + V V N D P + +T V+L + ++AGL Sbjct: 282 IKNVYITDRSIDFDMDIYVESIVSYDN--DKPITDTKHFNTHVQLTKKSSGYLIAGLRTV 339 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 G+P+L IPILG LF+ ++ + E Sbjct: 340 TKISEDSGVPVLKDIPILGILFQKNKKSVE 369 >gi|42520368|ref|NP_966283.1| type II secretion system protein, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410106|gb|AAS14217.1| type II secretion system protein, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 500 Score = 87.1 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 76/227 (33%), Gaps = 34/227 (14%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++ +N + QV ++ I EV D G + Sbjct: 240 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLQDGTKSII 289 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295 + ++ ++ L++ ++ P + AI+ Q A + H+Y Sbjct: 290 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 349 Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345 S+ T T + + GVVL P++ I + I +S Sbjct: 350 DIQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDIE 409 Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 D+P +R+ ++ +++ SG +V+ GL++ + Sbjct: 410 YVAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQ 456 >gi|322514180|ref|ZP_08067245.1| rough colony protein A [Actinobacillus ureae ATCC 25976] gi|322119966|gb|EFX91968.1| rough colony protein A [Actinobacillus ureae ATCC 25976] Length = 162 Score = 86.7 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 3/142 (2%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 + K ++ + +++ + V VS P AD + T L+ K G+A + Sbjct: 20 AFSHTAVAKTFALEQGQSQLIKTDAKIDTVFVSSPDVADYEILDDNTFMLYTKAEGRAEI 79 Query: 100 ILIGHDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 + DG + +IA ++ +SN+ ++ + V+ G + + Sbjct: 80 VAFDVDGTPLTEDFVNVNNAINNIAAANAQIQTRFPNSNLSIKKIGKAYVIEGKAKNAAE 139 Query: 157 SQRAVELSETFLSQSGRNQYAN 178 S+ + L + A Sbjct: 140 SEEINRIVGESLGAGRKVVEAK 161 >gi|254362930|ref|ZP_04978997.1| PulD family bacteriophage secretion protein [Mannheimia haemolytica PHL213] gi|153094576|gb|EDN75393.1| PulD family bacteriophage secretion protein [Mannheimia haemolytica PHL213] Length = 377 Score = 86.7 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 55/302 (18%), Positives = 94/302 (31%), Gaps = 45/302 (14%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 I RD+ +L L+ +V D +V +G I + ++ +T Sbjct: 113 IHRDVDYLASFLKD--GTEGNQVFASGDKLVYYGTSEDIARVKSILKSIDT--------- 161 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 +V + + EV+ GS + Sbjct: 162 ----------------KSREVVVTGYVFEVQ---------NIEKEGSGINLLAKLLSGKL 196 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL- 294 G V + ++ + + + R ++ PTL SG +F+ G Sbjct: 197 GISVGYKQSYENFITVNAGNLDAMFELFRTDQRFRVVSSPTLRVKSGSRGNFSVGSDVPV 256 Query: 295 --YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 T S+ GV+ PT + I L+IQ + + P+ Sbjct: 257 LSNVTYQDGRPIQSIEYRSSGVIFDIQPT-IKDKAIDLKIQQLSNFIKTDTGVNNSPTLV 315 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R T V + SG IVL GL ++ I + LL K G L +T+I + Sbjct: 316 KRDLVTDVTVKSGDVIVLGGLAENKISNGETSFSLLPK----GWL-SGKSNENTKTDIIV 370 Query: 413 AA 414 Sbjct: 371 LL 372 >gi|329905867|ref|ZP_08274251.1| Lipoprotein [Oxalobacteraceae bacterium IMCC9480] gi|327547462|gb|EGF32282.1| Lipoprotein [Oxalobacteraceae bacterium IMCC9480] Length = 243 Score = 86.7 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 72/240 (30%), Gaps = 20/240 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGV 250 QV + VT+ V G Q + + + Sbjct: 2 SRQVMVNVTVLAVTLTRGDNYGIQWDAVYQTLSRKYGLSNSLAKVANTNAFSAAILDTAT 61 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--- 307 ++ AL +R ++ ++ Q Q Y S +T +V Sbjct: 62 SKLAGSAMMIEALSEQGRVRRETSASVVTLNNQPVPVQVAKQTSYLKSSQTTQVPNVGST 121 Query: 308 -----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKA 356 T G + P VL+ G + L+ T++S + + P R Sbjct: 122 TTLTPGTITTGFNMSILPNVLNNGTVLLQFSTDISSLRSLRTVSSSTASIETPETETRNF 181 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 V + S T++++G + D ++G+ P L + + I I TP Sbjct: 182 LQRVAMKSNETLIISGFEQTDDNLTQQGV----GTPANLLLGGSLGAGSNKEIIVIMITP 237 >gi|254003197|ref|YP_003052663.1| type IVB pilus formation outer membrane protein, R64 PilN family [Methylovorus sp. SIP3-4] gi|253987280|gb|ACT52136.1| type IVB pilus formation outer membrane protein, R64 PilN family [Methylovorus sp. SIP3-4] Length = 559 Score = 86.7 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 99/287 (34%), Gaps = 30/287 (10%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + V + T N + ++ + N+A QV + V + V G + Sbjct: 275 KVVVTAATGTITVSDNPQVLAQVERYVQQQNMAMGRQVVVNVHVYSVSLSNSDSYGINWN 334 Query: 219 ITGSSSGPSKSFA-----------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 +S + F + K ++ G S + + + AL + Sbjct: 335 AVYNSLSGNFGFTLSNAFAPETGSTNLALKILATAGSASNSELKAFAGSQVMFDALSKQG 394 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---------HDYGVVLHF 318 + + ++T ++ Q A G Q Y SS+T T + + G ++ Sbjct: 395 RVSQITSSSITTLNNQPAPIQVGRQRTYLASSSTTIGTVGSPSVTTLQPGLINTGFSMNL 454 Query: 319 TPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P +L + L+ ++S G ++ P R V+L SG T+V+ G Sbjct: 455 VPHILDSKELLLQYAVDLSSLIGITTVTSGTSSIQTPEIETRNFLQRVKLNSGDTLVVTG 514 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +GI S + + G L N N + + P ++ Sbjct: 515 FEQTQDEANMQGIGDASNVSLGGGLTGNKGRNV----LVVLIQPVII 557 >gi|89885889|ref|YP_516087.1| Type II secretory pathway component PulD-like [Rhodoferax ferrireducens T118] gi|89347887|gb|ABD72089.1| Type II secretory pathway component PulD-like [Rhodoferax ferrireducens T118] Length = 475 Score = 86.7 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 63/463 (13%), Positives = 141/463 (30%), Gaps = 70/463 (15%) Query: 11 MMSIFLFSSNPSVAKLPPIKEA-NAAVINISDVEI-GKGKKISIGLNKVIILQVPVDVQD 68 + L +S+ +A + EA N+ +IS+ +++ + ++ Sbjct: 5 LTVALLVASSAFMAGCAQLPEATGDTTGNVGASGPIAPAPEISV-VDRSPDRTRNIGKEE 63 Query: 69 VLVSDP----------TKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLD 113 + ++ P +V + S R L GKN+ + + G + K M Sbjct: 64 LFIAQPLQSSDPMPRINIENVTILSSRVYELMRTLLDGKNI---SFSISGVNSKVMRR-H 119 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTV----------------VLHGMVRTIQDS 157 + LE L F T+ ++ + + S Sbjct: 120 VSASNITGDLEQILDDFANSVGFYWHYKGGTLHIAPDRQYIATIPPIDDVYESMPPMLQS 179 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL--KVTIAEVRRDILKQIGF 215 A+++ S +S+K+ L +++ + V + +V D + G Sbjct: 180 MGAIDVFVDRTSHLVTYSANREASEKIDGYLKHIRDNKKMISYDVYVWQVELDGDHKNGI 239 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + + G FS + + L I +++P Sbjct: 240 RWEKLDEEIASKRGVKRQAASSDAKLGAGFSSTFGRGELPIDVLSSFLSAQGKIHAISQP 299 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------GVVLHFT-----PTVL 323 + ISG ++F G +Y + ++ V G+ L TV Sbjct: 300 KMAMISGGKSTFRIGNTTVYAKQVGTDSSSGVNKTTVTTAQALSGIELTVVGNLDGETVY 359 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + ++ L + + +P R+ T + G +++LAG+ + Sbjct: 360 TDIQMKLNDLLRFNSFSANGISLQLPQNANRELSTLARIRPGNSLLLAGINISRTDDSRT 419 Query: 384 GIPLLSK--------IPILGALFRNSRFNREETEIFIAATPFL 418 + +P + + TE+ + +P + Sbjct: 420 ----VKDAREKNSMTLP------NSMYETEQRTELVLVFSPNV 452 >gi|299140102|ref|ZP_07033271.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] gi|298597948|gb|EFI54117.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] Length = 654 Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 89/253 (35%), Gaps = 42/253 (16%) Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + + F G G + + + L+A + RTL + + A Sbjct: 409 SGTVNASQFTNLLGVLGHFSGLPLAGVFLGSNTNLNLSLNA----SDARTLDDIQVRAND 464 Query: 282 GQSASFTSGGQHLYKTVSSSTG---------------------------------ATSVT 308 Q +F +G ++ T + S+G + Sbjct: 465 NQPVNFRAGTRYPITTSTYSSGGSNSLPSSLAGVNVGGTNLNTLLQQYLGTSTVTIPQIQ 524 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 D G+ + TP +L G + L ++ ++ E + + +P R +T+ +P+G Sbjct: 525 YEDLGITVKTTPRILRSGDVRLTLELKI-EALGTGSNDGIPILTNRSLTSTITVPAGKEA 583 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP--VAMRD 426 +LA + D + GIP L++IP N + E+ I TP +V+ + + Sbjct: 584 LLASEISRDESRSMSGIPGLNEIPGFQG--TNEDKEVDTDELLITITPHIVRAGDMRIAS 641 Query: 427 LSRPDDHYSVEDD 439 +H + Sbjct: 642 KRLAVEHTAKPSQ 654 >gi|90411855|ref|ZP_01219863.1| putative type II protein secretion system D protein [Photobacterium profundum 3TCK] gi|90327113|gb|EAS43485.1| putative type II protein secretion system D protein [Photobacterium profundum 3TCK] Length = 438 Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 33/233 (14%) Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 E++ GF + S + G S + F+F V++A Sbjct: 216 VEIKESDGN--GFDWKTLNILANLDGSEMLNNGFSLTSGN---RLGITGKNFNFSLVMNA 270 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-------TVSSSTGATSVTTHDYGVV 315 L + ++ +SG+ A + + Y + + + + G+ Sbjct: 271 LNEYGQTEAIQNTSIKTLSGKEAVLKTTERTPYIDKIEIMNNGEFTEKGFTTSETETGLE 330 Query: 316 LHFTPTVLSPGRI----------GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 L P ++ L+ VS +N P+ ++ ++ V + +G Sbjct: 331 LKILPYFDKDSKMLNIKVDLKNSSLKGFLNVSNDDFELN---QPNTEEQEFNSVVRIRAG 387 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 T V+ GL+ + I + ++++ + +FI P + Sbjct: 388 ETSVIGGLIYYKQNKSGNNI--------FNEITQSNKKEFSKNALFILIRPTV 432 >gi|59714382|ref|YP_207156.1| hypothetical protein VF_B0026 [Vibrio fischeri ES114] gi|59482659|gb|AAW88268.1| hypothetical protein VF_B0026 [Vibrio fischeri ES114] Length = 479 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 47/323 (14%), Positives = 98/323 (30%), Gaps = 39/323 (12%) Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 Q LN++ + + + +L + + +I + +S + L V + ++ Sbjct: 180 QYLNVEYKDVQIVDEIAASLEKVLGGDDIAKKSISVSPALS-SVTVTATIDQMQDI---- 234 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGP 226 + V++ QV L + + E R ++ + +I + +G Sbjct: 235 --------------EYVIDHYKKELSKQVILDIQMIEFRSNLGTEHSIDWNIVKDTGNGL 280 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + F G + G E+ + LE+ ++ T T ++ Q A Sbjct: 281 LQFFVPGTTTISQGAGYGLAFTGKGKWTGTESFIRVLEQQGSVSTQTPITAMILNNQPAK 340 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG------------LRIQT 334 T Y +SS + V + + I L+ Sbjct: 341 ITQQNVIPYIYEASSESSEGVISASVTRKTEVEGVDMMVNSIIQDEYVSLRISGQLQKIF 400 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 S +G M S + + +L G T V+A + + + Sbjct: 401 NRSTEKVGDVNLGMLSTQKSEITFANKLRYGQTFVIASVKQTSKTAEQTKSFWT------ 454 Query: 395 GALFRNSRFNREETEIFIAATPF 417 LF + + E + TP Sbjct: 455 -ELFGGTGTRNDTVETLVLLTPR 476 >gi|269105263|ref|ZP_06157955.1| hypothetical protein VDA_000083 [Photobacterium damselae subsp. damselae CIP 102761] gi|268160527|gb|EEZ39028.1| hypothetical protein VDA_000083 [Photobacterium damselae subsp. damselae CIP 102761] Length = 486 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 83/290 (28%), Gaps = 26/290 (8%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 VVL + + + ++V++ QV L++T+ Sbjct: 204 KVVLKSDSEDNKLIGDVQSVPSMGSITVRTTPSRMAQVRQVVDKFQQELAKQVLLEITVL 263 Query: 204 EVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 E R ++ K G + G K + G + A Sbjct: 264 EFRSNLGKDQGIDWQLLKNVGDGTIKFLIPGTTATATGNPAGLAFTGTGKWDGTTAFIKA 323 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------GVV 315 LE + T ++ ISG A + Y + S+ + T+ GV Sbjct: 324 LEEQGTVSTQTPISMLTISGYPARISQTITTPYLSDVSTEVTETTTSTSTTRDKVVEGVD 383 Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE--LPSGGTIVL 370 + V R+ ++ + +N + + R AD + L G T+V+ Sbjct: 384 MMVNAKVQKGVVSLRVTGKLTKIAGDTTEKINDATLRFIKTRDADLSFVNKLRYGQTVVI 443 Query: 371 AGLLKDDIQQLKE---GIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + + K GI L E E + TP Sbjct: 444 GSIKQQSTGANKSSSFGIDGLG----------MQSTTNETVETLVLLTPR 483 >gi|330883499|gb|EGH17648.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 98 Score = 85.2 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 SG T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ Sbjct: 10 AKSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI-- 67 Query: 422 VAMRDLSRPDDHYSV 436 + + D Y Sbjct: 68 TSSSQARQVTDDYRQ 82 >gi|310765409|gb|ADP10359.1| hypothetical protein EJP617_06780 [Erwinia sp. Ejp617] Length = 559 Score = 84.4 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 79/251 (31%), Gaps = 27/251 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L + I V + +Q+G + S + S + + Sbjct: 313 SRQVQLNIQIVSVSQSRNEQLGLDWGLIYRSLNNYGASLTGSMASASSSAASAGISILDT 372 Query: 253 RFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 ++ AL + T + ++ Q + SSST Sbjct: 373 ATGNAAKFSGSSMLIKALSEQGNVSMALNQTDPTANLIPVAYQLSNQKGILSSSSSTATA 432 Query: 306 SV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--------VIGVNAGDMP 349 +V TT G+ + P + G + L+ + P G D+P Sbjct: 433 NVGVTSTMTTTTITTGLFMTMLPFIQENGDVQLQFAFSYTSPPQIEKFISADGNTRNDLP 492 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + V L SG T+VL G + ++ K+G I+G R T Sbjct: 493 TTSTEGLTRKVNLRSGQTLVLTGSEQQNVSTDKQGTFTPGNF-IMG---GGQAGTRGRTT 548 Query: 410 IFIAATPFLVK 420 + I TP L++ Sbjct: 549 LVIMITPVLLR 559 >gi|332283584|ref|YP_004415495.1| PilN family type IV pilus biogenesis protein [Pusillimonas sp. T7-7] gi|330427537|gb|AEC18871.1| PilN family type IV pilus biogenesis protein [Pusillimonas sp. T7-7] Length = 575 Score = 84.4 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 78/259 (30%), Gaps = 29/259 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + ++ +N Q L VT+A V +G ++ S+ + + Sbjct: 313 QYIDKINERMSRQAMLYVTVASVTLTDSDSLGINWNLVWQSASGNYGAGLMNALSPLEGA 372 Query: 243 GDFSVKGVLDRF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + + +L AL + A+ + + +T Q + Y Sbjct: 373 SSVGFGILDTATGRAGQFAGTQAILSALSKQGAVSIMRQRGVTTQHLQPTPIHLTNEEQY 432 Query: 296 KTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 S T V + G + P + + L+ +S P + Sbjct: 433 VCGRSQTNTAQVGSTESIQMCSVVTGFAMDILPDIHGQN-LTLQFSLNMSPPAVIQQVPG 491 Query: 348 MP-------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK-IPILGALFR 399 P S + V + SG T+V++ + K+GI S IP G Sbjct: 492 DPDKPVFIASVDRQVFLQRVGMRSGQTLVISDFQEASETSTKQGIGGTSTWIPTGGG--- 548 Query: 400 NSRFNREETEIFIAATPFL 418 + + I +P + Sbjct: 549 --VREKARKVLVIIISPRI 565 >gi|37523454|ref|NP_926831.1| hypothetical protein gll3885 [Gloeobacter violaceus PCC 7421] gi|35214458|dbj|BAC91826.1| gll3885 [Gloeobacter violaceus PCC 7421] Length = 299 Score = 84.4 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 25/235 (10%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV--------- 259 +G ++ GS+ AA G + G+ V + Sbjct: 43 FGLDLGNGGALGGSTFPQYSGLAAGAGALSTAPLGNNGVLPNRSALTLTFANIVLQLQLL 102 Query: 260 --LHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVV 315 ++AL+ L + L G++A+ + Q VS+ T +S + Sbjct: 103 QQVNALQT------LIDQQLVVSDGETATISQNVQFRIPQTIVSNGTALSSTQAINARTT 156 Query: 316 LHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD-TTVELPSGGTIVLAGL 373 L+ TP VL S ++ + ++ + S+P D + L SGG +L G+ Sbjct: 157 LNLTPMVLPSKKQVAISVRGDFSDPQGSGEGL---VINTNSIDIPNLRLDSGGVALLGGI 213 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDL 427 + D ++ +P+LS IPILG LF++S ++ + + P + +P+A +L Sbjct: 214 TRHDEANIEYRVPVLSAIPILGDLFKSSNRVVKDQRLLVMIEPVIQEQPLAGAEL 268 >gi|189424031|ref|YP_001951208.1| type II secretory pathway component PulD-like protein [Geobacter lovleyi SZ] gi|189420290|gb|ACD94688.1| Type II secretory pathway component PulD-like protein [Geobacter lovleyi SZ] Length = 510 Score = 84.0 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 80/275 (29%), Gaps = 57/275 (20%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--------------------- 234 VT+++ + VR + +G S F Sbjct: 236 VTMRIVLMNVRLNNGNSLGIDWSQMAVGWQSQNIQNLGFKKLAKLDDSSSSTGTTTGTTT 295 Query: 235 -----------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + ++ RFS + +E + + +SG+ Sbjct: 296 TTTPATNLFEQGIGALFNTSGANLFMESSRFSLSALFSFMENFGKYNVMQNVFVETMSGK 355 Query: 284 SASFTSGGQHLYKTVSS----------STGATSVTTHDYGVVLHFTPTVLSPGR---IGL 330 + Y + + +T GV++ FTP + I L Sbjct: 356 KGKIEIVTESPYVSEIGISSLSSTSGATAATAKTSTAKAGVIMDFTPYYNKKQQMLTINL 415 Query: 331 RIQTEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 ++ E + ++AG P + +T + + ++ GL+ + G Sbjct: 416 KVNVEGVNRYVTISAGSQLGSFMQPETTKKSVETFLRMKPEQVAIIGGLVYEMNDDNVNG 475 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +N +E+ E+ I P ++ Sbjct: 476 LP--GDT----YLTKNVTGKKEKEELVIVVKPTII 504 >gi|283779820|ref|YP_003370575.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283438273|gb|ADB16715.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 1305 Score = 84.0 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 84/256 (32%), Gaps = 52/256 (20%) Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 +GF+ GS+ F A F +L +L+A + Sbjct: 1043 SADLDLGFRQGSFGSAVPQFGGFDAGTAASFG--------FAILSDIEVFFLLNAAQGDD 1094 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYK----------------------TVSSSTGAT 305 L P +T +GQ A + Q + +S + Sbjct: 1095 RTNILQAPKVTLFNGQQAFVSDTSQRPFVISVIPVVGDFAAAQQPVIAVLNEGTSLSVQG 1154 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQT--------EVSEPVIGVNAGDMPSYRVRKAD 357 V+ V L P + G + T V + + + R Sbjct: 1155 VVSPDRRFVRLTMVPFFSTIGDVDTFTFTGSTTTDSGSVIQDPSNPDENATDNVRTTTEG 1214 Query: 358 TTVE--------------LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 TTV+ +P GGT++L G+ + + + G+PLLSK+P + LF+N Sbjct: 1215 TTVQLPTFAFTTVTTTVSVPDGGTVLLGGIKRLREGRNERGVPLLSKVPYVSRLFKNVGI 1274 Query: 404 NREETEIFIAATPFLV 419 RE + + TP ++ Sbjct: 1275 GREAQSLMMMVTPRII 1290 >gi|120536911|ref|YP_956969.1| Type II secretory pathway component PulD-like [Marinobacter aquaeolei VT8] gi|120326745|gb|ABM21054.1| Type II secretory pathway component PulD-like [Marinobacter aquaeolei VT8] Length = 547 Score = 83.6 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 78/239 (32%), Gaps = 18/239 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L++ A V + + ++ + + ++ + Sbjct: 308 RQVYLQIRTAAVSVESANDFNVTWNNILNTVNSGAFELSSQTAEVPTQNLPNVFNVIRTS 367 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------- 305 L L + E +T +S Q S + Y + S AT Sbjct: 368 NGASLALELLASELESTEVNEQAVTTLSNQPTSLKVLTETGYISGISQQDATVNADNLVS 427 Query: 306 --SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVE- 361 T + G P V+S R+ L++ E+S + VN + R ++ V+ Sbjct: 428 DVQTDTVNIGFDATLLPRVISESRLQLQVALELSSNLTLVNFDSTIVQTPTRDRNSVVQR 487 Query: 362 --LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G T VLA ++G P L + ++EE + + TP + Sbjct: 488 AWLRNGETWVLAAFNSSKSSNQEQGT---GD-PGFWGLGGGTSKSKEEQILLVMITPHI 542 >gi|297520545|ref|ZP_06938931.1| general secretion pathway protein D precursor [Escherichia coli OP50] Length = 111 Score = 83.6 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + P +++ D Sbjct: 1 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAAD 57 >gi|319428145|gb|ADV56219.1| type II and III secretion system protein [Shewanella putrefaciens 200] Length = 492 Score = 83.6 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 37/338 (10%), Positives = 107/338 (31%), Gaps = 51/338 (15%) Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L D Q N+ + +I + + + N+ ++ + + G + T+ R Sbjct: 188 LFNADQDQFANIKATVSSEIEDAVKVIESMMGEKNVNGQVHPN--IASGTL-TVTTKPRI 244 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + E ++ Q V + V I + ++ G ++ Sbjct: 245 MRDVENYVKQLNAMFG-----------------QMVRIDVQIITFQSNLDNSFGVDWNMV 287 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 ++ + +F G+ + K +++AL+ + + P++ AI Sbjct: 288 RETTKGTLNFTIPSSGETSGLTFASTDKLFNGS---TALVNALKTQGNVSLVTTPSMLAI 344 Query: 281 SGQSASFT------SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT---VLSPGRIGLR 331 + + + ++ +T + V F+ + + ++ Sbjct: 345 NNRVGEIESLRKEAYVKDITMREATNEDSSTYSEVNQGVVSEGFSMRALVKIDGDEVLMQ 404 Query: 332 IQTEVSEPVIGVN------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE-- 383 + +S P+ + + +++ +G T++L+G + + + Sbjct: 405 MSATISRLGNFGTVEMPTITLKTPNMSEDRFNQPLKIQNGRTVILSGYTQSAVTSEQSES 464 Query: 384 -GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 PLL + ++ + TP +++ Sbjct: 465 FRNPLLG----------GNSGKERKSHTLVLVTPRIIR 492 >gi|255022020|ref|ZP_05294026.1| PilN [Acidithiobacillus caldus ATCC 51756] gi|254968506|gb|EET26062.1| PilN [Acidithiobacillus caldus ATCC 51756] Length = 544 Score = 83.6 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 94/301 (31%), Gaps = 35/301 (11%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L + +T+ + V + T + + L + QV + V + V Sbjct: 251 LSKVAQTVAGGGQVVVDASTGTVTVTGTPPEVRRVRDWVQGLARQLQRQVAITVHVYNVN 310 Query: 207 RDILKQIGFQHSITGSSSG------------PSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 + + G S S G PS S + + + Sbjct: 311 LNNEQNYGLNLSGAFQSLGRQYGVTLQGVAPPSVSSGGPAPLSLGANILSSATGALGQWQ 370 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----- 309 + AL + + + +++G+ Q Y SS+T +V T Sbjct: 371 GSSIAVQALATLGHVTQVFSRSAISLNGEPTPIQVAQQTGYLAESSNTTTANVGTTSGLI 430 Query: 310 ---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTV 360 G F P ++ GRI L + +S G ++ +P+ +V Sbjct: 431 PGTVTTGFTAMFLPKIV-DGRILLGMNMTISNLVGIQTISSGGSSIQVPTVDSSTFQQSV 489 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +L G T++L G + G+ P P+LG + + I I T + Sbjct: 490 KLKPGQTLLLTGYSQSQGSTTHNGVGSPYF---PLLG---GGADASLSRQMIAIVITARI 543 Query: 419 V 419 + Sbjct: 544 L 544 >gi|54303276|ref|YP_133269.1| hypothetical protein PBPRB1609 [Photobacterium profundum SS9] gi|46916706|emb|CAG23469.1| Hypothetical protein PBPRB1609 [Photobacterium profundum SS9] Length = 488 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 57/386 (14%), Positives = 101/386 (26%), Gaps = 56/386 (14%) Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 D+ + + G K+++ L + I L S Sbjct: 117 VDLHTTRQNILNVLSSQTG----YAFTPSEKKIVVQRYLSKTFIIQLPTGAYSAQQGSQG 172 Query: 137 RVEMVSDTVVLHGMVRTIQDSQR-----AVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + + D + G ++ + E + L + + V ++ I Sbjct: 173 QSKGKDDEAKVEGQFISVTYKDKDVFTEISEAVKVVLKSDDEDGELIGDVQPVPSMSGIT 232 Query: 192 GE---------------------DQVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKS 229 QV + + I E R ++ K G I G K Sbjct: 233 VRTTPVRMRQVQALIDSYQSELNKQVLIDIRILEFRSNLGKDRGVDWQILKEVGDGTLKF 292 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + G + ALE+ + T + +S Q A + Sbjct: 293 LIPGTTTSSAGNPAGLAFTGTGKWDGTTAFIKALEQQGTVSTETPISFRTLSSQPARISQ 352 Query: 290 GGQHLYKTVSSSTGATSVTTHDY-------GVVLHFTPTVLSPG---RIGLRIQTEVSEP 339 + S+ + TT GV + + V R ++ S+ Sbjct: 353 TLVTPFLEDFSTVITDNTTTPTTTRGSVTEGVDMTISANVQKGFVWLRTAGKLTKIASDT 412 Query: 340 VIGVNAGDMPSYRVRKADTTVE--LPSGGTIVLAGLLKDDIQQLKE---GIPLLSKIPIL 394 V + R AD L G T+V+ + + K GI L Sbjct: 413 TEKVADVALRFISTRSADLNFTNKLRYGQTVVIGSIKQQTTGANKSTSFGIDGLG----- 467 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 N + E I TP V+ Sbjct: 468 -----MQSTNNQTVETLILLTPRRVQ 488 >gi|294784349|ref|ZP_06749640.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27] gi|294487921|gb|EFG35276.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27] Length = 127 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 12/101 (11%) Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------------RKADTTVELPSGGTIVLA 371 I L I E+S+ N ++ R T V + +G TI+L Sbjct: 19 DNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKVRVKNGDTILLG 78 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 GL K Q ++ IP+L IPI+ F+N+ E ++++I Sbjct: 79 GLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 119 >gi|87311027|ref|ZP_01093152.1| RhcC2 [Blastopirellula marina DSM 3645] gi|87286317|gb|EAQ78226.1| RhcC2 [Blastopirellula marina DSM 3645] Length = 300 Score = 83.3 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 18/239 (7%) Query: 149 GMVRTIQDS---QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIA 203 G Q + A E + Q R + + + ++ L QV + V + Sbjct: 18 GTAPAKQVAPVPAAAEEETLQAEKQLQRLIASRDALTQEIDRLRKRTGQHSQVFVSVQVF 77 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 E+ Q + + + V G + + D + + V+ L Sbjct: 78 ELTHRKTPQ--------ANGFAAALAAGGLAEPGPVETGSATVYRVIADDEALKQVVAKL 129 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E++ A++ LAEPTL +SGQ ASF GG+ + V S+ G+ ++ YG +H P VL Sbjct: 130 EKSGALKVLAEPTLMTVSGQPASFHVGGEFPIQ-VPSADGSPAIEFKAYGAEMHVVPVVL 188 Query: 324 SPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 GRI L ++ +SE + +P+ RVR DT+VE+ G VLAGL++ + Sbjct: 189 GQGRIRLGLRPRISELDPDHGIKLGDLTVPALRVRGVDTSVEMHVGDAFVLAGLVQQRV 247 >gi|157164174|ref|YP_001467421.1| hypothetical protein CCC13826_0019 [Campylobacter concisus 13826] gi|157164249|ref|YP_001467411.1| ABC transporter ATP-binding protein YojI [Campylobacter concisus 13826] gi|157101403|gb|EAT97210.2| hypothetical protein CCC13826_0019 [Campylobacter concisus 13826] gi|157101412|gb|EAT97201.2| hypothetical protein CCC13826_1100 [Campylobacter concisus 13826] Length = 389 Score = 83.3 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 81/272 (29%), Gaps = 23/272 (8%) Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 L TI LK+IG + + S +++ S Sbjct: 134 QLSFTIISTDNTKLKEIGPRIESLLNPLDHFYFKIITNVLTVDST--------KVNKDSV 185 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTH 310 ++++ L+ + P +T I + + S + + S S V Sbjct: 186 TSLINLLKEKGVSDLIYNPRVTVIDNKDSVIESVIKTPIQKSSIDIQNSQSITTNQVEYQ 245 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 D G+ L+ + +++ + + + + P R T V L + ++ Sbjct: 246 DVGLKLYISSVLITNDSVSFTLDLYIENLLDDTLT---PRISSRHLKTNVYLTDTNSFLI 302 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 G+ + + + IP + IPILG + + I T + + Sbjct: 303 GGINSKETIKSTKTIPFIENIPILGDITTYKSEKTSDYSFSIFIT------MLPSEKDIF 356 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 + Y D + + + G Sbjct: 357 SEFYYDPADKHLALERYLTSASRNAKGAPRSG 388 >gi|207722770|ref|YP_002253205.1| type iv pilus biosynthesis protein [Ralstonia solanacearum MolK2] gi|206587952|emb|CAQ18533.1| putative type iv pilus biosynthesis protein [Ralstonia solanacearum MolK2] Length = 563 Score = 82.9 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 89/287 (31%), Gaps = 34/287 (11%) Query: 160 AVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 A +++ L + + L+ QV + V I EVR + G Sbjct: 284 AEVIADPNLGSVTVTGTPPQCDRVEDWVRTLDAMFGKQVAIDVRIYEVRLNQEDNYGLNL 343 Query: 218 SITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272 S+ S +F S SV + + + AL + + Sbjct: 344 SLGYKSGNGHTGATFTGVAPPTVSSNATPMSVGATIVGGKLDGTKVAVQALSTLGNVTQV 403 Query: 273 AEPTLTAISG-----QSAS---FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + +G QSA+ + Q + ST + G FTP V+ Sbjct: 404 VSRSGVTQNGKVMAMQSATLQDYIPSSQTTLASNVGSTSSMQTAPDISGFTSTFTPKVV- 462 Query: 325 PGRIGLRIQTEVSEPVI-----GVNAGDMPSYRVRK-----ADTTVELPSGGTIVLAGLL 374 GRI + +S + + ++R TV L G ++VL GL Sbjct: 463 NGRILIMFDMTLSNLNPLQEQTQGSGASLSKVQLRTKPLARFQQTVGLKPGESLVLTGLR 522 Query: 375 KDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ P IP+ G + ET I + T L+ Sbjct: 523 DQTTSTTNNGVGSPY---IPVAG---GGVDAAKRETMIAVVITARLL 563 >gi|315929956|gb|EFV09111.1| general secretory pathway protein D domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 355 Score = 82.9 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 10/164 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 S K + L + QV + V+I V + G + Sbjct: 193 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIGLNSQVNNE 252 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F +F + G G+ +F+++++ L + L+ P L A++ Q A + G Sbjct: 253 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 311 Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPG 326 Y+ SS G + TT G++L+ P + G Sbjct: 312 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDG 355 >gi|160873109|ref|YP_001557114.1| hypothetical protein Sbal195_4700 [Shewanella baltica OS195] gi|160858631|gb|ABX51854.1| conserved hypothetical protein [Shewanella baltica OS195] Length = 492 Score = 82.5 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 76/277 (27%), Gaps = 28/277 (10%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + ++N + QV L + I E R + K+ +I Sbjct: 228 VEAIKSLTAIAVRTTPDRMVNVRNLVNSVQEQFGQQVVLDIRILEFRSNRGKERSLDWNI 287 Query: 220 TGSSSGPSKSF-AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S F + +G + ALE+ + T T Sbjct: 288 IKDVGNGSLEFMIPGTTTVSQGASYGMAFRGTGKWDGTAAFIRALEQQGTVSTETPITAL 347 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------GVVLHFTPTVLSPG---RI 328 +S + A Y S V T GV + TP V+ I Sbjct: 348 GLSNRPARIAQTMTTPYIDEIKSESNDKVITASVTRASQSEGVDMMITPKVMDDAVWLSI 407 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE--LPSGGTIVLAGLLKDDIQ---QLKE 383 ++ V + V+ + R+++ L G T+V+ + + Sbjct: 408 AGKLTKIVGKRNETVHDVQLLFLDTRESEINFTNKLLYGQTVVIGSIKQTSTTAESNSNF 467 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G+P E + TP V+ Sbjct: 468 GVP------------SGEGTLSNTVETLVLLTPRKVQ 492 >gi|330890299|gb|EGH22960.1| general secretion pathway protein D [Pseudomonas syringae pv. mori str. 301020] Length = 123 Score = 82.1 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G +VL GLL+D Q E +P LS+IP+LG LFRN + +T + + P++++ Sbjct: 1 GQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 56 >gi|327413080|emb|CAX68109.1| putative pilus assembly protein [Salmonella enterica subsp. enterica] Length = 562 Score = 82.1 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 78/249 (31%), Gaps = 29/249 (11%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGGKFVSEGGDFSVKGV 250 Q+ L V I V + +++G + S + G S + + + G + Sbjct: 317 RQIQLDVKIMSVTQTRNEELGLDWDLVYSSLRNYGVSVKGSFNNASSGAASGAYSILDTA 376 Query: 251 LDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 ++ AL + + + + + Q SSST + Sbjct: 377 TGSARHFAGSNLIMKALSEQGDVSVVTSQSRATTNLTPVPYQLSNQQGILVSSSSTPTAN 436 Query: 307 V--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--------VIGVNAGDMPS 350 V + G+ + P + G + L+ P G D P+ Sbjct: 437 VGVTSTMSTSMLTTGLFMTAVPYIEENGNVQLQFAFSYDSPPKIESFFSADGNTRNDTPN 496 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETE 409 Y V + +G T++L G + + ++G + LF + + T Sbjct: 497 YSREAFTQKVNMKAGQTLMLTGSDQLSVSADRQGT-GSAD----NFLFGGGRKGTNKRTT 551 Query: 410 IFIAATPFL 418 + I TP L Sbjct: 552 LIILITPIL 560 >gi|213418601|ref|ZP_03351667.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 138 Score = 81.7 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 4/124 (3%) Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRK 355 + + G +L TP +L+ +I L + + + + +P + + Sbjct: 8 QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSE 67 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 + L +G +++L G + + IPLL IP++G LFRN Sbjct: 68 IASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIK 127 Query: 416 PFLV 419 +V Sbjct: 128 ASVV 131 >gi|297519324|ref|ZP_06937710.1| general secretion pathway protein D precursor [Escherichia coli OP50] Length = 136 Score = 81.3 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 7/138 (5%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKT 297 G + + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 1 GFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDVPVLTGSTVG 60 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 ++S +V G++L TP + + + I+ EVS+ + + + RK Sbjct: 61 SNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLK 118 Query: 358 TTVELPSGGTIVLAGLLK 375 TTV G IVL GL+ Sbjct: 119 TTVLANDGELIVLGGLMD 136 >gi|187930905|ref|YP_001901391.1| PilN [Ralstonia pickettii 12J] gi|187728949|gb|ACD30112.1| PilN [Ralstonia pickettii 12J] Length = 561 Score = 81.3 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 95/289 (32%), Gaps = 34/289 (11%) Query: 158 QRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 A +++ L ++ + L+ Q+ + V I EVR G Sbjct: 280 ADATVVADKHLGSVTVTATPPQCDRLEEWVKGLDAMFGKQIGIDVKIYEVRLSQEDNYGL 339 Query: 216 QHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIR 270 S+ S +F S + + + L AL + Sbjct: 340 NLSLAYKSGNGHTGATFTGAGVPSVTSTASPMTFGATIVGGKLDGTKAALQALSTLGNVS 399 Query: 271 TLAEPTLTAISG-----QSASFT---SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 + + +G Q A+ G Q + ST A +T+ G +F P V Sbjct: 400 RVLQRGGVTQNGKVLALQDATLQDFVQGTQTTLASNVGSTTAIQTSTNISGFTGNFRPKV 459 Query: 323 LSPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 + GRI + +SE + + + + + + +V L G T+VL G Sbjct: 460 I-NGRIMMVFDMTISELQPLQTFTSGSSASQSTVQLRTMPLARFEQSVGLRPGETLVLTG 518 Query: 373 LLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + GI P +P+LG +++T I + T L+ Sbjct: 519 MREQSTSTTNNGIGSPY---MPLLG---GGVDAQKKDTMIAVVITARLL 561 >gi|241258202|ref|YP_002978468.1| type IV secretion pathway protein [Ralstonia pickettii 12D] gi|309783222|ref|ZP_07677935.1| R64 PilN family type IVB pilus formation outer membrane protein [Ralstonia sp. 5_7_47FAA] gi|240869002|gb|ACS66659.1| type IV secretion pathway protein [Ralstonia pickettii 12D] gi|308917966|gb|EFP63650.1| R64 PilN family type IVB pilus formation outer membrane protein [Ralstonia sp. 5_7_47FAA] Length = 561 Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 95/289 (32%), Gaps = 34/289 (11%) Query: 158 QRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 A +++ L ++ + L+ Q+ + V I EVR G Sbjct: 280 ADATVVADKHLGSVTVTATPPQCDRLEEWVKGLDAMFGKQIGIDVKIYEVRLSQEDNYGL 339 Query: 216 QHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIR 270 S+ S +F S + + + L AL + Sbjct: 340 NLSLAYKSGNGHTGATFTGAGVPSVTSTASPMTFGATIVGGKLDGTKAALQALSTLGNVS 399 Query: 271 TLAEPTLTAISG-----QSASFT---SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 + + +G Q A+ G Q + ST A +T+ G +F P V Sbjct: 400 RVLQRGGVTQNGKVLALQDATLQDFVQGTQTTLASNVGSTTAIQTSTNISGFTGNFRPKV 459 Query: 323 LSPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 + GRI + +SE + + + + + + +V L G T+VL G Sbjct: 460 I-NGRIMMVFDMTISELQPLQTFTSGSSASQSTVQLRTMPLARFEQSVGLRPGETLVLTG 518 Query: 373 LLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + GI P +P+LG +++T I + T L+ Sbjct: 519 MREQSTSTTNNGIGSPY---MPLLG---GGVDAQKKDTMIAVVITARLL 561 >gi|254252520|ref|ZP_04945838.1| type II and III secretion system protein [Burkholderia dolosa AUO158] gi|124895129|gb|EAY69009.1| type II and III secretion system protein [Burkholderia dolosa AUO158] Length = 200 Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 9/141 (6%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100 G I + + + +Q V V DP ADV++ + L K G NV+ Sbjct: 21 AGASGTIELAVGAQRQISAGRALQRVAVGDPAVADVLIMKGSRSGSVLLVAKAPGATNVM 80 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + ++ + ++ + + S RV T VL G ++ +RA Sbjct: 81 LWERGRDEPTVWNVEV------VDAAAQAVLDGSTPRVNAYGGTAVLRGTAASLDAHERA 134 Query: 161 VELSETFLSQSGRNQYANSSS 181 +++ ++ + + Sbjct: 135 AAVAKNTAAKGAIVDRSTVAD 155 >gi|281356794|ref|ZP_06243285.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316921|gb|EFB00944.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 554 Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 52/290 (17%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 Y+ + ++++ ++ + + +K+ + E+ + ++G ++ G Sbjct: 220 TANYSRKNIEEMLRKYDVPLPE-IKIKLNVYELYSENDDKLGVDFQAWKNNEGTDFFSVG 278 Query: 233 D----------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G +G + + + L L + +T Sbjct: 279 GRFRDNWAATYGGTMARPQGSERTSFYNFNPKWNTRYLDFLTSKGKAKIAYSGEVTVRQN 338 Query: 283 QSASFTSGGQHLYKT--------------------------------------VSSSTGA 304 +++ + Q Y + Sbjct: 339 TTSTLSRTTQIFYTDTTVPPDDTQETIDNWFTRPLDNALQALGRESPGNDIRIGKDNQQN 398 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-RKADTTVELP 363 + +G ++ ++P L+I + S IG + P + +V + Sbjct: 399 VTRAPQSFGFIMTVKAGSIAPEAAILQISLDNSSL-IGYQSSGAPRIQKGNTIRNSVMIS 457 Query: 364 SGGT-IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + V+ GL K ++ + G+P L IP LG LF+ + ++++ + Sbjct: 458 TKRNEFVIGGLEKREVVRGSTGVPYLKDIPGLGYLFQVESESTRKSQLVV 507 >gi|187928617|ref|YP_001899104.1| PilN [Ralstonia pickettii 12J] gi|241114194|ref|YP_002973669.1| type IV secretion pathway protein [Ralstonia pickettii 12D] gi|187725507|gb|ACD26672.1| PilN [Ralstonia pickettii 12J] gi|240868767|gb|ACS66425.1| type IV secretion pathway protein [Ralstonia pickettii 12D] Length = 563 Score = 80.2 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 89/287 (31%), Gaps = 34/287 (11%) Query: 160 AVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 A +++ L + + L+ QV + V I EVR + G Sbjct: 284 AEVIADPNLGTVTVTGTPPQCDRVEDWVRTLDAMFGKQVAIDVRIYEVRLNQEDNYGLNL 343 Query: 218 SITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272 S+ S +F S SV + + + AL + + Sbjct: 344 SLGYKSGNGHTGATFTGVAPPTVSSNATPMSVGATIVGGKLDGTKVAVQALSTLGNVTQV 403 Query: 273 AEPTLTAISG-----QSAS---FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + +G QSA+ + Q + ST + G FTP V+ Sbjct: 404 VSRSGVTQNGKVMAMQSATLQDYIPSSQTTLASNVGSTSSMQTAPDISGFTSTFTPKVV- 462 Query: 325 PGRIGLRIQTEVSEPVI-----GVNAGDMPSYRVRK-----ADTTVELPSGGTIVLAGLL 374 GRI + +S + + ++R TV L G ++VL GL Sbjct: 463 NGRILIMFDMTLSNLNPLQEQTQGSGASLSKVQLRTKPLARFQQTVGLKPGESLVLTGLR 522 Query: 375 KDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ P +P+ G + ET I + T L+ Sbjct: 523 DQTTSTTNNGVGSPY---VPVTG---GGVDAAKRETMIAVVITARLL 563 >gi|150021136|ref|YP_001306490.1| secretin/TonB, short N-terminal domain [Thermosipho melanesiensis BI429] gi|149793657|gb|ABR31105.1| Secretin/TonB, short N-terminal domain [Thermosipho melanesiensis BI429] Length = 369 Score = 80.2 bits (196), Expect = 8e-13, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 26/205 (12%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 +K+ + E+ + L++ G + S ++ S+ + + L + Sbjct: 166 IKIKLYEIDEEDLRKFGVEFSSNDETTTLKVSYNNN----------ALQLSLDLMDTNLF 215 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--TTHDYGVV 315 ++ AL + + L T+ + +SA ++ + + + G V Sbjct: 216 AIISALISSGKAKILTNGTIFLKANESAKISAYTTIDFTLSNDKVIEKKLLNEIEISGTV 275 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 + L + + +++L +AGL Sbjct: 276 FV--------DHVSLNLTARAEALSPSNKTIGL------TFSNSLDLKYNKHYYIAGLSF 321 Query: 376 DDIQQLKEGIPLLSKIPILGALFRN 400 + ++ GIP L +PI+G LF+ Sbjct: 322 ETTNNIESGIPGLKDLPIIGNLFKT 346 >gi|332308903|ref|YP_004436753.1| hypothetical protein Glaag_4580 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176232|gb|AEE25485.1| hypothetical protein Glaag_4580 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 506 Score = 79.8 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 75/254 (29%), Gaps = 27/254 (10%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEG 242 + N QV + I + + ++ + + + S DF G V Sbjct: 259 IQAENRKATAQVYFDIKIVDYQDEVGSEYSLNWDVVSKNLSAEGVVSLTNDFSGSLVDGT 318 Query: 243 GDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + AL+ + + EP +T + + +G Y S Sbjct: 319 AAVLGYSKESGKYAGSSAFISALDNQGVVYNVIEPKITLRNNRIGKVINGADTTYLASSG 378 Query: 301 STGATSVTT-------HDYGVVLHFTPTVLSPGRIGL-------RIQTEVSEPVIGVNAG 346 S T+ +T G+ L+ + + ++ Sbjct: 379 SASTTTSSTGILIPGIVSTGLNLYAVANINLDDMSVIGAIANKYASLVDIGSVTSDDATI 438 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P ++ + G TI+L+GL + + + + LF ++ + + Sbjct: 439 QTPETTRKEFHQEFFVRDGETILLSGL-RSRLSEYNSSVAGSM-------LFGGTKGSAD 490 Query: 407 E-TEIFIAATPFLV 419 T I TP ++ Sbjct: 491 TYTNTVILLTPRII 504 >gi|283851709|ref|ZP_06368987.1| type IVB pilus formation outer membrane protein [Desulfovibrio sp. FW1012B] gi|283572829|gb|EFC20811.1| type IVB pilus formation outer membrane protein [Desulfovibrio sp. FW1012B] Length = 468 Score = 79.4 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 82/269 (30%), Gaps = 28/269 (10%) Query: 163 LSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + S + S ++V + LN+ QV L V + + + G Sbjct: 206 VVSNQSAGSMTVRDTPDSVRRVATYVEDLNVRLSRQVALNVQVWSLNVTDNAEAGINLQA 265 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 S + + + ++ + G L + VL AL + + Sbjct: 266 LFQDSNLTVAAGSLSEVGAINTATATILSGKLKDSA--GVLKALGQWGKASQVTSAGGLV 323 Query: 280 ISGQSASFTSGGQHLY-------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 +SGQ + +H Y T S T + G + P +L R+ L+ Sbjct: 324 MSGQPVPVMAVQRHAYLAGVGKSTTDYSQTTEVTPGEVTTGFAMTVIPHILDQRRVILQY 383 Query: 333 QTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 +S E ++P + + G T+VL G K+ K Sbjct: 384 NLNLSSLDEMKEFTTSDVTIELPQVSTQAFSQRSTMKLGQTLVLCGFEKESNSNKKT--- 440 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAAT 415 LG + + + T + I Sbjct: 441 -------LGFINASRASDYGRTLLVITIR 462 >gi|213618889|ref|ZP_03372715.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 392 Score = 79.4 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 70/213 (32%), Gaps = 18/213 (8%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 193 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 244 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 245 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 300 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330 +P++ ++ A K + + G +L TP +L+ +I L Sbjct: 301 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 358 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362 + + + + +P + + + L Sbjct: 359 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATL 391 >gi|238898455|ref|YP_002924136.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466214|gb|ACQ67988.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 546 Score = 79.4 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 86/254 (33%), Gaps = 15/254 (5%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L G V+++ R + ++ ++ N QV L + + V Sbjct: 259 LQGAVKSMLTPGRGRLFLSAGNLTVTDVPRVLDTVERFVDERNQTLNRQVVLNIEVLSVE 318 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 Q+G + ++S S + FGG + + L AL Sbjct: 319 ARQKDQLGLDWNAVFNNSRWGLSLSQAFGGVSGNIMQGGFSVVDGRLAGSKVFLKALAEQ 378 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318 + + + + T + + Q Y ++ +V T G ++ Sbjct: 379 AKVSVVTQQSSTTTNLSPVAMQVAEQEDYVAQVTTQATANVGTATSIQPATITTGFYINL 438 Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 P +L G+ I L G ++ ++ + +++ V++ +G T+VL+ Sbjct: 439 LPNILPDGQHLLLQFAINLSDPPTRRTFTSGESSVELLNTQLKTFTQRVKMKTGQTLVLS 498 Query: 372 GLLKDDIQQLKEGI 385 G + + K+G+ Sbjct: 499 GFQQASRKGSKQGV 512 >gi|281356728|ref|ZP_06243219.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316855|gb|EFB00878.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 627 Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 5/137 (3%) Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 Y + ++G L TP V + +I + + + ++G P Sbjct: 456 YSYIIRKDKKRVTKQAEFGFTLELTPEVNTEASQIKVAMS---NTNLLGFKGNGEPRTSE 512 Query: 354 RKADTTVEL-PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +T++++ GG + GL K + + +P L IP LG +F + ++T+I Sbjct: 513 TVLNTSLQMANDGGVFYIGGLEKSALVRSVSKVPFLGDIPFLGWVFAGESESVKKTQIVA 572 Query: 413 AATPFLVKPVAMRDLSR 429 T V P D Sbjct: 573 VLTVVPVTPDTPVDARL 589 >gi|330951303|gb|EGH51563.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae Cit 7] Length = 584 Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 23/160 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAA 232 ++++ L+I QV ++ I E D KQ+G + + ++SG A Sbjct: 427 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAG 485 Query: 233 DFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + G S + V + + L A+E+ +++P + Sbjct: 486 NTGSSTTSNVPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 545 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 ++A G + Y+ SS+GAT+V+ + + L TP Sbjct: 546 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQ 584 >gi|124514594|gb|EAY56106.1| probable type IV pilus biosynthesis protein [Leptospirillum rubarum] Length = 610 Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 86/291 (29%), Gaps = 23/291 (7%) Query: 147 LHGMVRTIQDSQRAVELSETF-LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 + V++I SQ ++++ + + +N + V LKV + +V Sbjct: 322 ISQSVKSILGSQGNFSIAQSAGTITVTTTPRIMGEVARYVREINDSLSRHVWLKVEVLDV 381 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---VLDRFSFETVLHA 262 + F + S S A S G + L S V+HA Sbjct: 382 SLENQNTNSFNLTAALHGLMKSGSLAVTGQPGVFSLAGATPITTSTLTLPSSSTNAVIHA 441 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---------VSSSTGATSVTTHDYG 313 L + + +T ++ Q+ + Y S+ T G Sbjct: 442 LSTQGKVSVVTRSFVTTLNDQAVPVQNVQNIGYLMENLAGIAGIGQSTFTQNIPGTVTVG 501 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + P +L + L + + + + +P+ R V+L SG T Sbjct: 502 FTMTLVPHLLDDKEMLLGVSIDDTNLNQMQTLQSNGGSIQLPNTSQRSFMQWVKLTSGET 561 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V+ G + + G P + I I TP + Sbjct: 562 AVIGGYEQTRRVFQQNGT----GTPSNFWMGGGQNAETVRDAIVILVTPVV 608 >gi|188591492|ref|YP_001796091.1| type IV secretion pathway, outer membrane lipoprotein, putative precursor (pilN homolog) [Cupriavidus taiwanensis] gi|170938887|emb|CAP63888.1| type IV secretion pathway, outer membrane lipoprotein, putative precursor (pilN homolog) [Cupriavidus taiwanensis LMG 19424] Length = 556 Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 98/298 (32%), Gaps = 36/298 (12%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKV--------MNLLNIAGEDQVTLKVTIAE 204 T+Q + +AV + + + V + L QV + V + E Sbjct: 264 TLQATAKAVAGASAEVVVDKNLGTLTVTGDPVQCDRIEQFVKSLAAMYGKQVAIDVQVYE 323 Query: 205 VRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSF---ETV 259 VR G S+ SS +F++ ++ + F + V Sbjct: 324 VRVTREDNYGLNLSLAYQSSAGQTGVAFSSVSTPTISGSATPMNLGATIMSGPFAGSKAV 383 Query: 260 LHALERATAIRTLAEPTLTAISG-----QSAS---FTSGGQHLYKTVSSSTGATSVTTHD 311 + AL + + + +G Q+A+ + + Q ST + T Sbjct: 384 VQALSTLGNVSQVVSRSGVTQNGKVLALQTATLQDYVAQSQTTLAANVGSTSSIQTGTVT 443 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSYRVRKADTTVE 361 YG +F P V+ GRI + +S+ + + + + ++ Sbjct: 444 YGFTSNFLPKVV-DGRILMNFDMTLSDLLPLQRFNSGGDANQTSVQLRTMPTNRFTQSIT 502 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G ++VL GL G+ + P + AL + +T I I + L+ Sbjct: 503 LKPGESLVLTGLRNQKASTTNNGV---GE-PWMAALGGGVGALKGDTVIAIMISARLL 556 >gi|296100785|ref|YP_003610931.1| type IV pilus formation outer membrane protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055244|gb|ADF59982.1| type IV pilus formation outer membrane protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 557 Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 76/251 (30%), Gaps = 27/251 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L + I V + +Q+G + S + S + + Sbjct: 311 SRQVQLNIQIVSVNQTRNEQMGLDWGLVYKSLQNVGASLTGSMANASSSAASAGISILDT 370 Query: 253 RFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 ++HAL + T + ++ T SSST Sbjct: 371 ASGNAAKFSGSSLLIHALSEQGNVSMALNQTDPTANLTPVAYQLSKSTGMLTSSSSTATA 430 Query: 306 SV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--------IGVNAGDMP 349 +V T G+ + P + G + L+ + P G D Sbjct: 431 NVGVTSTMTTTNVTTGLFMTMLPFIQENGDVQLQFAFSYTSPPDIKSFVSRDGNTRNDTA 490 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 V L SG T+VL G + ++ K+G ILG +R T Sbjct: 491 DTSTEGLARKVNLRSGQTLVLTGSEQQNVSADKQGTFTPGNF-ILG---GGQTGSRGRTT 546 Query: 410 IFIAATPFLVK 420 + I TP L++ Sbjct: 547 LVIMITPVLLR 557 >gi|293386468|ref|YP_003540630.1| conjugal transfer protein [Erwinia amylovora ATCC 49946] gi|291201111|emb|CBJ48249.1| conjugal transfer protein [Erwinia amylovora ATCC 49946] Length = 569 Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 81/252 (32%), Gaps = 31/252 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV LKV I V + IG ++ + V++ G S + Sbjct: 322 SRQVNLKVVIYTVNSETSDAIGIDWNVIYKTLAGKYGINLAGPSGTVADAGSLSFSVLDT 381 Query: 253 RFS-------FETVLHALERATA-IRTLAEPTLTAIS--------GQSASFTSGGQHLYK 296 + AL + P +T Q A S +Y Sbjct: 382 ATGAARQFAGSSFLFEALSKQAKVADVRTIPLMTTNMASASVVVGRQIAYLKSVSTTVYS 441 Query: 297 TVSSSTGATSVTT--HDYGVVLHFTPTVLSPG-RIGLRIQTEVS------EPVIGVNAGD 347 T S++ + ++T G + P +L G R+ L + +S E + Sbjct: 442 TGSTTLPSQTLTPGSVTTGTNITIFPKILDGGDRMMLNMFLNISSLIQLREISSDTEKLE 501 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS-KIPILGALFRNSRFNRE 406 P R V L G T+V++GL ++ ++G LS I G ++ Sbjct: 502 APEVDSRSVPQRVWLKPGQTVVISGLEQNVATSNRQG--QLSPDNQITG---GQRSGDKT 556 Query: 407 ETEIFIAATPFL 418 I TP++ Sbjct: 557 RQSFVITVTPYI 568 >gi|331660223|ref|ZP_08361158.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli TA206] gi|331052490|gb|EGI24526.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli TA206] Length = 548 Score = 77.9 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 93/292 (31%), Gaps = 27/292 (9%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEV 205 + V + ++ + L+ + + + + + + N + QV LKV + + Sbjct: 262 IKATVSAMLSAEGSSWLAPGSATLTVTDTPEVLNRIGEYIERQNAILDRQVKLKVDVYRI 321 Query: 206 RRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 KQIG + S + G + + FG E ++ AL Sbjct: 322 TFRDTKQIGIDWTAVYSAARGMGYTLTSAFGDAASDVATIGVTSSSGRLSGSEVLIKALN 381 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-------THDYGVVLH 317 + I + + A + Y +S+T + S + T G+ + Sbjct: 382 QQANISSATTTNTVTTNMVPAPLQIAKETTYLAKTSTTTSDSYSSTELEPGTITTGLFMT 441 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIV 369 P + G I L++ +S+ G + P+ VR L G T+V Sbjct: 442 VLPYIRDNGTIQLQMSFSLSDDPTITTVSAKDGSTSIQTPTTDVRSLTQRANLKPGQTLV 501 Query: 370 LAG---LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L G L + +Q R+ + + + TP L Sbjct: 502 LNGFQSLYNEANRQGTTSKSWFG-------FGGGESAERDRSMLLVLVTPVL 546 >gi|38638012|ref|NP_942986.1| putative component of type II secretion apparatus [Ralstonia eutropha H16] gi|32527350|gb|AAP86100.1| putative component of type II secretion apparatus [Ralstonia eutropha H16] Length = 552 Score = 77.9 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 98/298 (32%), Gaps = 36/298 (12%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKV--------MNLLNIAGEDQVTLKVTIAE 204 T+Q + +AV + + + V + L QV + V + E Sbjct: 260 TLQATAKAVAGASADVVVDKNLGTLTVTGDPVQCDRIEQFVKSLVAMYGKQVAIDVQVYE 319 Query: 205 VRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSF---ETV 259 VR G S+ SS SF++ ++ + F + V Sbjct: 320 VRVTREDNFGLNLSLAYQSSSGKPDVSFSSVSTPTISGSATAMNLGATIMSGPFAGSKAV 379 Query: 260 LHALERATAIRTLAEPTLTAISG-----QSAS---FTSGGQHLYKTVSSSTGATSVTTHD 311 + AL + + + +G Q+A+ + + Q ST + T Sbjct: 380 VQALSTLGNVSQVVSRSGVTQNGKVLALQTATLQDYVAQSQTTLAANVGSTSSIQTGTVT 439 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSYRVRKADTTVE 361 YG +F P V+ GRI + +S+ + + + + ++ Sbjct: 440 YGFTSNFLPKVV-DGRILMNFDMTLSDLLPLQRFNSGGDANQTSVQLRTMPTNRFTQSIT 498 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G ++VL GL G+ + P + AL + +T I I + L+ Sbjct: 499 LKPGESLVLTGLRNQKASTTNNGV---GE-PWMAALGGGVGALKGDTVIAIMISARLL 552 >gi|238899395|ref|YP_002925078.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467157|gb|ACQ68930.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 560 Score = 77.5 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 85/260 (32%), Gaps = 41/260 (15%) Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGGD 244 NI QV LKV + V + Q G ++ S G + A + G + G + Sbjct: 307 NIKLSKQVLLKVVVYTVHTETADQSGIDWNVIFKSLSGKYGIHVANAFNAGSNLANGGFE 366 Query: 245 FSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + + +L AL + + ++ + +A G Q Y +S Sbjct: 367 ILPTATGRASQWAGSQFLLKALSEQVKVSDVKTLSIMTTNLATAGMQIGKQTTYLRKTSV 426 Query: 302 TGATSVT-----------THDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPV--------I 341 T + T G ++ P +L ++ L + ++S Sbjct: 427 TTGNTTTGAEPVQSLEPGEITTGTNINIMPKILEGNDKMMLTMMMDISSLNRLRRIENRN 486 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA----L 397 + + P R V L G T++++G ++ + G+ G+ L Sbjct: 487 KTESIEAPDTDSRSIPQRVWLKPGETVLMSGFEQNIQDGSQRGV---------GSSRHFL 537 Query: 398 FRNSRFNREETE-IFIAATP 416 F + + E I TP Sbjct: 538 FGGGMSGKSKKESFVITITP 557 >gi|320107685|ref|YP_004183275.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] gi|319926206|gb|ADV83281.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] Length = 617 Score = 77.1 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 56/405 (13%), Positives = 126/405 (31%), Gaps = 92/405 (22%) Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 + +T+ + G N + ++M++L L + + +R V Sbjct: 223 AIPLDEKTILVAEDTPG--NRERLERQMEEMVSLPGLTTEQLNDIGNIVRNIFDVKQATV 280 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + + T+VL + R +E I G +V L Sbjct: 281 QPHAGTLVLRASAEKLNAINRTLE-------------------------DLIDGGSEVLL 315 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 ++ + V ++ + G + ++ P+ + ++ + + S Sbjct: 316 RLRLYSVSKNKSQDTGLTPPQSLTAFSPAGAASSLISANQTLADQIVASGALGTNPSQIA 375 Query: 259 VLHALERATAIR-----------------TLAEPTLTAIS-------------------- 281 + AL + L+ ++ Sbjct: 376 IALALIASGVSSNLLTGSFLKVGGGLSTVILSTANSPTLNLTLSSSDSRSLDDVQLRLSD 435 Query: 282 GQSASFTSGGQHLYKTVSSSTGA--------------------------TSVTTHDYGVV 315 ++ +F SG + T + S+G + D G+ Sbjct: 436 RETGTFRSGSRFPIVTSTYSSGISTAAGSSTAAALLSQFLGSSASSVVVPQIQYEDLGLT 495 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + G + + ++ ++ D+P + + + L +G T ++ GLL Sbjct: 496 LKATPHMQRSGDVSVHLELKIEALSGQAQ-NDIPILANQLVTSDLTLRAGETAMIMGLLT 554 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + GIP LS +P ++ N+ E+ E+ + TP +V+ Sbjct: 555 RSQSKAISGIPGLSDLPGFQSITDNTGNKMED-EMVLLLTPVVVR 598 >gi|281355620|ref|ZP_06242114.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281318500|gb|EFB02520.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 496 Score = 77.1 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 62/321 (19%), Positives = 98/321 (30%), Gaps = 60/321 (18%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 A +ET + + + + L+ QV L++ EVR L+ IG + Sbjct: 160 AAYLNAETNTIYWKDDVASAKAILAWVQRLD-RPVPQVNLRLNYYEVRESKLRDIGVDYL 218 Query: 219 ITGSSSGPSKSFAADFGGKFVSE--------------------GGDFSVKGVLDRFSFET 258 + G + A GK S +S G F+ Sbjct: 219 AWKNGPGLNLFAAGYDAGKVFSNEAVLQLLGGAKQFADLAKNFSTSWSYGGFFTAPQFDL 278 Query: 259 -VLHALERATAIRTLAEPTLT------------AISGQSASFTSGGQHLYKTVSSSTGAT 305 + L+++ R ++ LT A T Q+L K T Sbjct: 279 SFVRLLQQSGNARLVSNADLTFLNTPLYGDGRDVTRTYYAELTPSYQNLKKDDDDRTDVV 338 Query: 306 SVTTHDYGVVLHFT-------------------------PTVLSPGRIGLRIQTEVSEPV 340 + V L T G + V+ V Sbjct: 339 ADQAETPAVALKITNPVICFGAQTGEVDSVGMVPATGDFYENNRTGGVIFSYNLGVNSVV 398 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 N GD S R D + L +L +K+ + GIP LS+IP+L LF Sbjct: 399 ERNNRGDELSNYAR-IDGALTLGFKQEKLLGSYVKETDVEQTIGIPFLSRIPVLKYLFGT 457 Query: 401 SRFNREETEIFIAATPFLVKP 421 + +E++ I + A LV P Sbjct: 458 TTTLKEKSYIIVTAEARLVHP 478 >gi|134287991|ref|YP_001110155.1| type IVB pilus formation outer membrane protein [Burkholderia vietnamiensis G4] gi|134132641|gb|ABO60267.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia vietnamiensis G4] Length = 563 Score = 77.1 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 75/260 (28%), Gaps = 34/260 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---FAADFGGKF 238 KK ++ N V V + V G + + A F Sbjct: 309 KKYIDYQNKRLSKFVQFNVKVYSVTLSNNDSAGVNWNALYQTVTGKYGIKLSGAAFSAPA 368 Query: 239 VSEGGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAIS--------GQSASFT 288 + FSV E V+ AL L ++ G + Sbjct: 369 AAVSAGFSVLKSSGSPWSGTEAVVSALNEQGKANLERSQALPTLNFQAVATQVGTQTGYV 428 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------G 342 +G Q S+ + + T + G L P V I ++ +S G Sbjct: 429 AGTQTTQTAQVGSSTSIQMGTINVGFNLSLFPYVQDNNDILVQFNLNLSNLDSIRKVNIG 488 Query: 343 VNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-----A 396 ++ + P+ + V + G T++L G+ ++D + G G A Sbjct: 489 DSSAEAPNINLPLNTVQKVRIRPGDTLMLTGINQNDDSSNRTGT---------GMHWNWA 539 Query: 397 LFRNSRFNREETEIFIAATP 416 L T + + TP Sbjct: 540 LGGGVNAQSNRTMLVVLITP 559 >gi|221235980|ref|YP_002518417.1| CpaC-like secretion pathway protein [Caulobacter crescentus NA1000] gi|220965153|gb|ACL96509.1| CpaC-related secretion pathway protein [Caulobacter crescentus NA1000] Length = 143 Score = 76.7 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 53/119 (44%), Gaps = 5/119 (4%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 ++R + ++ + A+ PI+ ++ + + + + + Sbjct: 1 MRRLSLAIAAVATLCGAAAGAQTLPIEP-----VSAKTSGAAVSVDLPVSAGQASYVSLA 55 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 V+D++V DP+ ADV V + RT+ + GK G +++ G +G+ + + +++ + Sbjct: 56 GSVRDIVVGDPSIADVSVVNDRTLVVLGKRPGVTSLLAFGANGRPLADRQVVVSENGGG 114 >gi|255624862|ref|XP_002540535.1| conserved hypothetical protein [Ricinus communis] gi|223495099|gb|EEF21848.1| conserved hypothetical protein [Ricinus communis] Length = 150 Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 1/109 (0%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 A E K ++++ + K ++++P VQ V +P ++ +P Sbjct: 41 PTGAAPLRAEAGPNCKGEAAKPAQLALQVGKSSLMRLPEPVQHRSVGNPLVVQALMVAPD 100 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 T+Y+ G +VG N+I+ G G LDI + D + L+ L + D Sbjct: 101 TLYIAGVDVGTTNMIIQGKSGLC-SVLDITVAMDPSALQAMLATAMPDE 148 >gi|290243112|ref|YP_003494782.1| type II and III secretion system protein [Thioalkalivibrio sp. K90mix] gi|288945617|gb|ADC73315.1| type II and III secretion system protein [Thioalkalivibrio sp. K90mix] Length = 551 Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 55/292 (18%), Positives = 93/292 (31%), Gaps = 28/292 (9%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI--AEVR 206 G + + + + + + T + + S ++ +N QV++ V I E Sbjct: 259 GTMVSSRGAFSVSDTTGTITVRDVPDVVDRVSD--YVDNMNDTFSRQVSVDVQIYRVEAT 316 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETVLH 261 + L+ + + ++ S VS GG + + E + Sbjct: 317 ENELRGVNWNALFNNNNMEFEVSSPGGNASGDVSPGGVRLSVPDGAGTLSNLVGSEGFIA 376 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--------DYG 313 +LE + + TL ++ Q A G Y S T +V + D G Sbjct: 377 SLEEIGDVSEVTSTTLQTVNNQPAPVRIGQTVSYLEEVSQTDTANVGSQASLTPGEVDVG 436 Query: 314 VVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + P V GR I L + E G +P R L SG Sbjct: 437 FSMQLLPHVQDNGRDMLMQVMITLSTLDRLEEFSSGDQTIQLPEVSSRDFVQRTWLQSGE 496 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +VLAG + GI + + LG N R + I TP + Sbjct: 497 ALVLAGFESIQANLARSGI-IDADKWALG---GNRRAENTRESLIIVMTPTV 544 >gi|218195539|gb|EEC77966.1| hypothetical protein OsI_17332 [Oryza sativa Indica Group] Length = 1496 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 49/180 (27%), Gaps = 37/180 (20%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 V++ L+ QV ++ I EV + + Q G Q S G Sbjct: 231 VIDQLD-GRRAQVLVESLIVEVAANKVAQFGIQWQGVMGSYGNGTIGVIGTNSSQGGGAN 289 Query: 244 DFSVKGVLDRFS----------------------------FETVLHALERATAIRTLAEP 275 S+ + + + LE L+ P Sbjct: 290 ILSLALAAASGNTTTIANSAANLGAGLNVGIAPRVNGNYYLGALANFLESTGDANVLSTP 349 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGR 327 L + + A G + T S + T+V D ++L +P + G Sbjct: 350 NLMTLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVRLMLRVSPQSTNTGT 409 >gi|160902548|ref|YP_001568129.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95] gi|160360192|gb|ABX31806.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95] Length = 694 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 9/162 (5%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F+ +++ +++P + G AS S V+ + Sbjct: 528 TLQFDGIIN--GSKDKASLISKPVIYVNEGGRASIKSVLSVPVFDEEG----KIVSKIES 581 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G ++ I + TE+ + + D R ++ +P+GG I L G Sbjct: 582 GFIMEV---SGEYDNITKMVNTELDISISELKNEDKNIVDERNMNSKFIIPNGGFIKLGG 638 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 L I + + GIP+ +IP++G LF + ++ I Sbjct: 639 LNFTSIVENETGIPIFKEIPVIGQLFTSYEKTENVYDLVILI 680 >gi|149175013|ref|ZP_01853636.1| bacterial type II/III secretion system protein [Planctomyces maris DSM 8797] gi|148845991|gb|EDL60331.1| bacterial type II/III secretion system protein [Planctomyces maris DSM 8797] Length = 308 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 31/173 (17%) Query: 259 VLHALERATAIRTLA-EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 + L++A + + P + +SGQSA+ SGG++ + + TSV +GV Sbjct: 156 AIEQLKKAGRVTVVHGSPEIVTVSGQSATSMSGGKYP-VLIPAGDNQTSVEWKRFGVFCK 214 Query: 318 FTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL--- 370 P +L GRI L E+S+ + VN +P VR+ T E+ G T+V+ Sbjct: 215 VEPRLLDNGRIQLEFSPEISQRDYANAVKVNGLTIPGLTVRRIYTQAEMNLGETLVVRTV 274 Query: 371 ---AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G + + ++ + E+T TP + Sbjct: 275 SPAGG--QSQVVNA-----------------KSDTTSSEDTVTLFMVTPVAID 308 >gi|213647736|ref|ZP_03377789.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 396 Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 78/247 (31%), Gaps = 52/247 (21%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT L G V I+ +A+++++ Sbjct: 192 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 242 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 243 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 271 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 272 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 331 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSY 351 + ++ YG ++ P + G+I + + E + + +P Sbjct: 332 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 389 Query: 352 RVRKADT 358 T Sbjct: 390 GRTLIST 396 >gi|153878167|ref|ZP_02004504.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152065369|gb|EDN65496.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 93 Score = 74.8 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFL 418 + + G IV+ GL++ + Q K+GIP L P++G+ LF ++ N + TE+ + P + Sbjct: 1 MVVRDGTAIVIGGLIQVNNQDDKQGIPGLQDFPLIGSILFSSTSNNDKHTELVLIIIPEV 60 Query: 419 VKPVAMR 425 V P A Sbjct: 61 VNPAADN 67 >gi|303328014|ref|ZP_07358453.1| putative type IVB pilus formation outer membrane protein, R64 PilN family [Desulfovibrio sp. 3_1_syn3] gi|302861840|gb|EFL84775.1| putative type IVB pilus formation outer membrane protein, R64 PilN family [Desulfovibrio sp. 3_1_syn3] Length = 531 Score = 74.8 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 74/269 (27%), Gaps = 28/269 (10%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLL---NIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + + + + + ++V N + N QV L V + + + G Sbjct: 264 SVVGNQAAGTMTVRDRAENVRQVSNYIAEINKRLSRQVALTVHVWALEVTDENEAGLDFQ 323 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + ++ S + S V G L VL AL+ + Sbjct: 324 VLFANDNVSIVAGSLASLGSPSSASATIVSGKLKNS--TGVLKALKEWGNATQVTSGGGL 381 Query: 279 AISGQSASFTS-------GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +S Q + G ++ T + G + P +L R+ L+ Sbjct: 382 ILSNQPVPIQAIKRIAYLAGSSSSQSDYGQTTEITPGEVTTGFAMTIIPHILDRRRVLLQ 441 Query: 332 IQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +S E +P R + G T+VLAG + Sbjct: 442 YSINLSSLDELTEFSTSDLTVQLPKTSTRAFSQRSTMQMGQTLVLAGFQDQSQKLANS-- 499 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAA 414 LG L +T + I Sbjct: 500 --------LGLLNFGRGAKYGKTLLVITI 520 >gi|150377244|ref|YP_001313839.1| hypothetical protein Smed_5129 [Sinorhizobium medicae WSM419] gi|150031791|gb|ABR63906.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 170 Score = 74.8 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 2/158 (1%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 L + ++ E + V+ + +G + ++ + +P Sbjct: 3 RRSTGAVLLLAMSALVSPATADEQKSPVVPVQQKSVGADGVERLVVDFAKTVTLPRPAST 62 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 V++ + A + RT+ L GK G N+I+I DG ++ NL + + L + Sbjct: 63 VIIGNTGIAQASLSDDRTVILTGKTPGSTNLIVIDRDGAEVANLILDVVAGSGRLVT-VH 121 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + + D V+L G ++ A +++ Sbjct: 122 QGLRRATFTCGRRCDPVLLVGDDADHFNA-TASQIAAR 158 >gi|16263312|ref|NP_436105.1| hypothetical protein SMa1580 [Sinorhizobium meliloti 1021] gi|14523991|gb|AAK65517.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 170 Score = 74.0 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 2/154 (1%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72 L + ++ + E A+I + G + ++ + +P V++ Sbjct: 7 GAVLLLAMSALVRPAAADEQKTAIIPVQQRSTGAKGVERLVVDFAKTVALPRPASTVIIG 66 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 + A + RT+ L GK G N+I+I DG ++ NL + + L + + Sbjct: 67 NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVT-VHQGAR 125 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + D V+L G ++ A +++ Sbjct: 126 RATFTCARRCDPVLLVGDDADHFNA-TASQIAAR 158 >gi|213649903|ref|ZP_03379956.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 109 Score = 74.0 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T +P G ++++ G +D + IP+L K+P++G+LFR S N+ Sbjct: 2 ISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRVFMIE 61 Query: 416 PF-LVKPVAMRD 426 P +V P+ Sbjct: 62 PKEIVDPLTPDA 73 >gi|307318076|ref|ZP_07597512.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306896117|gb|EFN26867.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] Length = 170 Score = 73.6 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 2/154 (1%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72 L + ++ + E A+I G + ++ + +P V++ Sbjct: 7 GAVLLLAMSALVRPAAADEQKTAIIPFQQRSTGAEGVERLVVDFAKTVALPRPASTVIIG 66 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 + A + RT+ L GK G N+I+I DG ++ NL + + L + + Sbjct: 67 NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVT-VHQGAR 125 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + D V+L G ++ A +++ Sbjct: 126 RATFTCARRCDPVLLVGDDADHFNA-TASQIAAR 158 >gi|307304369|ref|ZP_07584120.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] gi|306902571|gb|EFN33165.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] Length = 170 Score = 73.6 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 2/154 (1%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72 L + ++ + E A+I + G + ++ + +P V++ Sbjct: 7 GAVLLLAMSALVRPAAADEQKTAIIPVQQRSTGAEGVERLVVDFAKTVALPRPASTVIIG 66 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 + A + RT+ L GK G N+I+I DG ++ NL + + L + + Sbjct: 67 NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVT-VHQGAR 125 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + D V+L G ++ A +++ Sbjct: 126 RATFTCARRCDPVLLVGDDADHFNA-TASQIAAR 158 >gi|87120224|ref|ZP_01076119.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121] gi|86164327|gb|EAQ65597.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121] Length = 57 Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T+ L GL+ ++ +Q + G+P+L +P +G LFR+ + E+ + ++ Sbjct: 2 DGETMALGGLVSEETRQSESGVPMLKDLPFIGRLFRSESKETVQRELTVLIKTQIL 57 >gi|153829316|ref|ZP_01981983.1| MSHA biogenesis protein MshL [Vibrio cholerae 623-39] gi|148875216|gb|EDL73351.1| MSHA biogenesis protein MshL [Vibrio cholerae 623-39] Length = 429 Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 46/150 (30%), Gaps = 16/150 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235 QV L+ I EV Q G S SS+G S + + G Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSNGNPITSVLPG 332 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + V+ SF+ V+ + + L+ P +TA + Q A G Y Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 T SS T + TP Sbjct: 393 VTDLSSVVGTG-DNAQASPDITLTPFFSGD 421 >gi|160903268|ref|YP_001568849.1| NolW domain-containing protein [Petrotoga mobilis SJ95] gi|160360912|gb|ABX32526.1| NolW domain protein [Petrotoga mobilis SJ95] Length = 388 Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 18/222 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + L V I E + + F S FSV+ + Sbjct: 176 IELTVYIVETNERYSD-------LIKGNVFNINQKGIINSFSFTSPAIGFSVQDL----- 223 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 FE + E+ + + + + G+ A + + ++ G+ Sbjct: 224 FEAEIEMYEKNETANLVTKQVVNVLPGEPALLSLKNLESIVFTTYRNEFRNIE---SGIE 280 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 + TPT+++ L+I + D + +T V L +++A L Sbjct: 281 IEMTPTMMNQ---ILQISFRTKTTNLMEVTNDSYLLSESELETKVNLNPNEILLIADLDL 337 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + G LL +P L LF +++ E + I T Sbjct: 338 SQLYSKNGGTTLLKDLPFLRFLFGDNQNIDESKRMMIFLTAT 379 >gi|58038376|ref|YP_190345.1| PilN [Gluconobacter oxydans 621H] gi|58000790|gb|AAW59689.1| PilN [Gluconobacter oxydans 621H] Length = 571 Score = 72.9 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 90/296 (30%), Gaps = 38/296 (12%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKV------MNLLNIAGEDQVTLKVTIAEVRR 207 + + ++ + + +V ++ L+ + QV + V + ++ Sbjct: 280 QKTADTIANGAQVIADEGLGTLSVTGNPDQVTRVSDWIHSLSESLMQQVAIDVHVYTLKE 339 Query: 208 DILKQIGFQHSITGSSSGPSKSF-----------AADFGGKFVSEGGDFSVKGVLDRFSF 256 GF I + G D F + D + Sbjct: 340 THETNYGFSPQIALKNYGKVYGLSMIPAAIPGMQTNDIPFSFGASILDTAKGAAGQFSGS 399 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTS--------GGQHLYKTVSSSTGATSVT 308 + + AL + + + A +G SA F + + + + S+ S Sbjct: 400 QLAIQALSELGNVTEMYSRSAVATNGMSAPFQNGINTTYLANSSTVLASNAGSSATLSPG 459 Query: 309 THDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 G + TP ++ L+ + ++ P D TV L Sbjct: 460 VVMSGFMGEITPRIVDQRILLHINFLLQTLLSIQTFQSNGSSIQEPKTSSTSLDDTVVLR 519 Query: 364 SGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPF 417 SG T++L+G + D + + G+ PL LG ++T++ + Sbjct: 520 SGSTLMLSGYVDDSSSRDRTGVGSPLF----WLGG--GGGDAQTQKTQVIVTVEAH 569 >gi|189017140|ref|YP_001909457.1| Lipoprotein [Erwinia tasmaniensis Et1/99] gi|188027077|emb|CAO94861.1| Lipoprotein [Erwinia tasmaniensis Et1/99] Length = 568 Score = 72.5 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 80/251 (31%), Gaps = 29/251 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV LKV I V D+ +G S+ + G + + G S + Sbjct: 321 SRQVNLKVVIYTVNSDVSDAVGLDWSVIYKTLAGKYGINLAGPGGSIVDAGSLSFSVLDT 380 Query: 253 RFSF-------ETVLHALERATAIRTLAEPTLTA---------ISGQSASFTSGGQHLYK 296 + AL + + + L + Q A S +Y Sbjct: 381 ATGSARQFAGSSFLFDALSKQAKVADVRTIPLMTSNMASASVVVGRQIAYLKSVATTVYS 440 Query: 297 TVSSSTGATSVTT--HDYGVVLHFTPTVLSPG-RIGLRIQTEVS------EPVIGVNAGD 347 T +S+ + ++T G + P VL G R+ L + +S + + Sbjct: 441 TGNSTLPSQTLTPGSVTTGTNITIFPKVLDGGDRMMLNMFLNISSLIQLRQISSDTEKLE 500 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P R V L G T+V++GL ++ KEG+ + G Sbjct: 501 APEVDSRSVPQRVWLKPGQTVVISGLEQNVTNVNKEGM-FSPDNIVTG---GKRSGGSIR 556 Query: 408 TEIFIAATPFL 418 I TPF+ Sbjct: 557 QSFVITVTPFI 567 >gi|269123031|ref|YP_003305608.1| Type II secretory pathway component PulD-like protein [Streptobacillus moniliformis DSM 12112] gi|268314357|gb|ACZ00731.1| Type II secretory pathway component PulD-like protein [Streptobacillus moniliformis DSM 12112] Length = 312 Score = 72.1 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 41/324 (12%), Positives = 97/324 (29%), Gaps = 57/324 (17%) Query: 99 VILIGHDGKQMLNLDILIERDIAHL-------EMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + + ++ N ++ ++ + E + + +++ V D +L G Sbjct: 27 IKIYNEKKVEIKNKEVKKVEEVYEILKIQNIPENEILKLDGSFGVKIRKVGDKYILSGEK 86 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + I + + MN + + Sbjct: 87 KNISKLKHII----------YSIDKIKKQIIIKMN---------------VIDTSISFFD 121 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 + G + ++ KF+ S L + AL+++ + Sbjct: 122 RFGLNLKLE-------ENKNDGLVAKFLENKLSLSNLLNLGGAKLGLDIEALKQSGDMYI 174 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---I 328 + P++ + + +K V T + G++ P +++ G + Sbjct: 175 KSFPSIMVLDNSEGEMRITDELSFKVSEK-----KVQTSEAGLIFKIKPRIVTKGYKEFV 229 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I +E+S +T V L + ++G+ ++ P Sbjct: 230 ELEIYSEISSFKSEKVR------SKNILNTKVLLKDKTSTFISGVGRESKSINISN-P-- 280 Query: 389 SKIPILGALFRNSRFNREETEIFI 412 IPI LFR N+E+ I++ Sbjct: 281 -SIPIFSTLFRKKSKNKEKRNIYV 303 >gi|281356727|ref|ZP_06243218.1| hypothetical protein Vvad_PD2101 [Victivallis vadensis ATCC BAA-548] gi|281316854|gb|EFB00877.1| hypothetical protein Vvad_PD2101 [Victivallis vadensis ATCC BAA-548] Length = 479 Score = 72.1 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 87/274 (31%), Gaps = 41/274 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-------------DFGGKFVSE 241 QV L + + + + +++G + + G DF S Sbjct: 196 QVQLNIYV--ISDNNFRELGIDYLAWKNGPGAEIFATGFDFSNFYSVEHLQDFTNILSSG 253 Query: 242 GG--DFSVKGVLDRFSFETV-LHALERATAIRTLAEPTLTAISGQSAS------------ 286 + G+L +F+ L L + T A LT + + Sbjct: 254 PIWDATGLGGILVAPNFDATFLRMLAQKGKAWTAASAMLTLTNDFTTPAATSWEDASYRF 313 Query: 287 -FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG------RIGLRIQTEVSEP 339 FT Q++ K + +T ++ ++ L + EV+ Sbjct: 314 KFTPQLQNIVKDENQTTSLDALDGSEFSFYLSSPVICFGDDPAKKALTLMCNWNLEVNSL 373 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V N + + + + L +G +LA K + + G+P L +IP+L LF Sbjct: 374 VETDN-QGVATIDSNSFSSNLTLEAGTEKLLAVYDKHVVTEQYNGMPFLGEIPVLKYLFG 432 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 + + T V PV +++ P Sbjct: 433 AESKVDSKMR--VFVTMSAV-PVETKNIPNPAAG 463 >gi|114798749|ref|YP_761695.1| hypothetical protein HNE_3018 [Hyphomonas neptunium ATCC 15444] gi|114738923|gb|ABI77048.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 147 Score = 71.7 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 52/102 (50%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 +K A A+ ++ +++S+ +K + L++ ++V + ADV VH R + Sbjct: 4 AVKPALVALASLFLAGTAFAQQLSVEASKTVPLRLTGPAASIVVGNKNIADVAVHDDRLI 63 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 ++ GK+ G N+++ G+++ + ++++ + + L R Sbjct: 64 FVTGKSYGTTNLMVFNKAGEEVYSAEVVVTANSSSLVTVNRA 105 >gi|45751681|emb|CAF21324.1| InvG protein [Burkholderia pseudomallei] Length = 214 Score = 71.3 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 22/219 (10%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 10 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 68 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F G LD F + AL + Sbjct: 69 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 117 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 118 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 175 Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTT 359 + + + E S+ I ++ MP + +T Sbjct: 176 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTV 214 >gi|330983953|gb|EGH82056.1| putative lipoprotein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 561 Score = 71.3 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 85/276 (30%), Gaps = 31/276 (11%) Query: 170 QSGRNQYANSSSKKVMNLLNIA---GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 S +KV + Q+ ++ + E+ D + Q S S G Sbjct: 291 GSLTVTDTPQVMEKVSRYIKTQNAIANKQIAIRADVYEINSDENGEFDPQLSALYSFGGF 350 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 D + D S L + ++ T+ A +G+ Sbjct: 351 KLGMQDDTFTFSPNRDSTTMNHKFSDSSS--AAFKLLRTNKNVAQVSSSTIYAQNGEPTP 408 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDY---------------GVVLHFTPTVLSPGRIGLR 331 F + Y ++S + G + P V S GR+ ++ Sbjct: 409 FQQLDEIGYLAEVQIETSSSSESSSSDASNLATLKPGKTSQGYSMTIIPRVTSDGRVMMK 468 Query: 332 IQTEVSEPVI-------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + S G +PS K + V + SG +++AG+ + Sbjct: 469 FAVDSSRLNSIDSYGLDGGAQIQVPSRSTNKNNQLVTVKSGEPLMIAGIERTANNATITS 528 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 PL K +LG + +++ I TP+++K Sbjct: 529 -PLGRKSWLLG---GSQSGGKKKIMTMIVLTPYIMK 560 >gi|221215376|ref|ZP_03588341.1| putative component of type II secretion apparatus [Burkholderia multivorans CGD1] gi|221164808|gb|EED97289.1| putative component of type II secretion apparatus [Burkholderia multivorans CGD1] Length = 550 Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 87/274 (31%), Gaps = 26/274 (9%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP- 226 + ++ + LN + + + V++ EV + G S+ SS Sbjct: 281 VITITGTPPQCDRLERWIKELNASFSKSIAIDVSVYEVHLSNNENYGANLSLAYKSSSGH 340 Query: 227 -SKSFAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISG 282 SF+ K S+ + + AL + + + + +G Sbjct: 341 TGVSFSGASVPKVSGAASAMSLGATILSGPMAGSTAAVQALSALGNVSQVVQRSGMTQNG 400 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-------PGRIGLRIQTE 335 ++ + + Y + ST A +V TP GRI + Sbjct: 401 KALNLQAATDQDYVNQTQSTLAANVGATSGIQTATVTPGFTGSFLPRYRDGRIFVVFDMT 460 Query: 336 VSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +S + + + + + +V L G ++V+ G+ + K G+ Sbjct: 461 LSNLTALEPYPPNPKTDQASVQLRTLQKSRFQQSVSLKPGDSLVITGMYQQTASVNKNGV 520 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P+LG +++T + I + ++ Sbjct: 521 -GSPSFPLLG---GGIDAQKKDTILAIVISARVL 550 >gi|322436034|ref|YP_004218246.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] gi|321163761|gb|ADW69466.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] Length = 635 Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 5/143 (3%) Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + G SAS +SS + D G+ L TPTVL G I + I ++ Sbjct: 477 VTVGGVSASSLLNQ----YLGASSQTIPQIQYEDIGITLKTTPTVLKSGLITMHIDLKI- 531 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 E + G +A ++P R + V P G T ++ L GIP L+++P Sbjct: 532 EALTGQSANNIPVLTSRVFTSDVTCPEGSTAMMLSQLSSQESAAVSGIPGLAELPGFQTS 591 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 + R+ +E+ + TP LV+ Sbjct: 592 VADRITERDSSELVMMVTPHLVR 614 >gi|325271188|ref|ZP_08137740.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51] gi|324103677|gb|EGC00972.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51] Length = 360 Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 91/259 (35%), Gaps = 24/259 (9%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 RD+A+L TL+ V+ V + G + S + S Sbjct: 117 YRDVAYLSETLQPLFEGR----FAVNRQVSVPGATPSPLSSPQGSAASLVSRDSDHLVFV 172 Query: 177 ANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 + + + + LL + +V ++ + EV+ GS+ + S Sbjct: 173 GSKAEIEKVKLLLPQIDIAMGEVMVRGVVYEVQTGDSN---------GSAFSLAASLLKG 223 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 ++ G F + L F VL AL R +++P+L SG A+F+ G + Sbjct: 224 KLNITLA-GNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPSLRVRSGAEATFSVGAEV 282 Query: 294 L-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GD 347 S SV D GV+ + P + + L + ++S V + Sbjct: 283 PVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQ-VRESTVDLVVDQQLSNFVQTTTGVNN 341 Query: 348 MPSYRVRKADTTVELPSGG 366 P+ R+ T+V++ Sbjct: 342 SPTLTKRQLTTSVQMRDRE 360 >gi|325107410|ref|YP_004268478.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] gi|324967678|gb|ADY58456.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] Length = 1546 Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V +P GGT++L G+ + + G+P+L+KIP + LF+N+ RE + + T Sbjct: 1469 VQTVVSVPDGGTVLLGGVKRLREGRNMAGVPILNKIPYVSRLFKNTGVGRETESLMLMVT 1528 Query: 416 PFLV 419 P ++ Sbjct: 1529 PRII 1532 >gi|222147187|ref|YP_002548144.1| pilus subunit transmembrane protein [Agrobacterium vitis S4] gi|221734177|gb|ACM35140.1| pilus subunit transmembrane protein [Agrobacterium vitis S4] Length = 159 Score = 70.5 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 18/119 (15%) Query: 6 RTFFTMMSIFLF-----SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 R F+M LF +A +P A + + + +N+ IL Sbjct: 7 REMFSMALPMLFRCCFAFLLAGMATVPGTAHAEDPL-------------LRVVMNQARIL 53 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 ++ V V++ + AD V P+T+ L G++ G N++L+ G + + IL+ D Sbjct: 54 KLDRPVSKVIIGNEKVADATVADPKTIVLTGRSFGTTNLVLLDSQGNAIFDERILVSID 112 >gi|114568966|ref|YP_755646.1| hypothetical protein Mmar10_0415 [Maricaulis maris MCS10] gi|114339428|gb|ABI64708.1| conserved hypothetical protein [Maricaulis maris MCS10] Length = 152 Score = 70.5 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 46/91 (50%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A A + I V +++ + ++++P + ++V +P+ AD +VH RT+ + G Sbjct: 6 ATAFTLAIVCVAPAAAHDLAVPVEHAEVIRLPAEASAIVVGNPSIADALVHDGRTLVVTG 65 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAH 122 + G+ NVI + G+ + DI++ + Sbjct: 66 RLQGRTNVIALDRVGRVIYERDIVVSNPVEG 96 >gi|296120909|ref|YP_003628687.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776] gi|296013249|gb|ADG66488.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776] Length = 1566 Score = 70.5 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 40/72 (55%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P TTV +P GGT++L G+ + + G+P+L+KIP + LF+NS RE Sbjct: 1481 LPVVEQVTVLTTVSVPDGGTVLLGGVKRLREGRNMAGVPILNKIPYVSRLFKNSGVGRET 1540 Query: 408 TEIFIAATPFLV 419 + + TP +V Sbjct: 1541 ESLMLMVTPRIV 1552 Score = 43.6 bits (101), Expect = 0.071, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 9/137 (6%) Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G DFGG + G + + D +F + A + + L P LT +GQ Sbjct: 1266 QGSFDIGVPDFGGFDPTAGITTGLAILSDLEAF-FFIQAAQGDSRSNLLFAPKLTLFNGQ 1324 Query: 284 SASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTE 335 +A+ + + T ++T + GV L T + + R + L I Sbjct: 1325 TATVSDTVNRFFVTGYNTTVGVGAAIQTPQIQQFPEGVSLTVTAVISADRRYVRLTIIPN 1384 Query: 336 VSEPVIGVNAGDMPSYR 352 + Sbjct: 1385 FTSITDVQTFSTASGVT 1401 >gi|59714055|ref|YP_206830.1| toxin coregulated pilus outer membrane protein TcpC [Vibrio fischeri ES114] gi|59482303|gb|AAW87942.1| toxin coregulated pilus outer membrane protein TcpC [Vibrio fischeri ES114] Length = 484 Score = 70.5 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 74/215 (34%), Gaps = 8/215 (3%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + L + QV+++ I + + L Q+ + + + + + + Sbjct: 235 DQLFDRLKAESQMQVSVQYRIISLSKSKLSQLAAKFGLDSKGNDFTITSELVDSVALNAA 294 Query: 242 GGDFSVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYK--- 296 GG S + V+ L + + + P + + + + Sbjct: 295 GGGLSFAKRSVSGRLDAVVKYLAQDVVSEGHFVGLPNRIMPINLTTTSSYISEVEKVDNE 354 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVR 354 V ST + + G+ + P VL GRI L + + V+ +P+ Sbjct: 355 NVDKSTTSLKTSEIKTGLSMLILPKVLEDGRIQLTSGFTKKQLIAMDTVSGVQLPTVDEN 414 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + +TV L SG ++ L K + + LL Sbjct: 415 ETLSTVTLDSGDVELIT-LYKGNSNNSAQAAQLLG 448 >gi|239833241|ref|ZP_04681570.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG 3301] gi|239825508|gb|EEQ97076.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG 3301] Length = 139 Score = 69.8 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 50/103 (48%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 A + I+ + I++ ++ IL++ V++ +P+ AD VV +T+ Sbjct: 14 VPAMGAAFMAVIAVAQASAEDYIALETSQARILRLARPADSVVIGNPSIADAVVQDAQTI 73 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 L GK+ G N++++ G+ +L+ ++++ R+ R+ Sbjct: 74 VLTGKDFGVTNIVVMDKQGEPILDRELVVSRNTRGTTRIYRQA 116 >gi|90409526|ref|ZP_01217562.1| type II secretion system protein [Psychromonas sp. CNPT3] gi|90309367|gb|EAS37616.1| type II secretion system protein [Psychromonas sp. CNPT3] Length = 98 Score = 69.4 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 37/82 (45%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + K +++ L++ +L +P + + ++ AD + + +FGK VG ++ ++ Sbjct: 17 SAQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTKIMIFGKRVGSTSLYVLD 76 Query: 104 HDGKQMLNLDILIERDIAHLEM 125 + + + + ++ L Sbjct: 77 ARENVIYSATVKVNHNVQELNA 98 >gi|167648156|ref|YP_001685819.1| hypothetical protein Caul_4197 [Caulobacter sp. K31] gi|167350586|gb|ABZ73321.1| conserved hypothetical protein [Caulobacter sp. K31] Length = 131 Score = 69.4 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 37/88 (42%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 ++ + +S+ + + + V+DV+V +P ADV + + RT+ + GK Sbjct: 13 SLGATAAGAQSLASPLSVSAGQAARISLSAPVRDVVVGNPAVADVSLINERTLVILGKKA 72 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAH 122 G V+ G + + +++ Sbjct: 73 GATTVMAFDARGHALADRQVVVSDIPDG 100 >gi|225872364|ref|YP_002753819.1| transporter, outer bacterial membrane secretin (Secretin) family [Acidobacterium capsulatum ATCC 51196] gi|225793711|gb|ACO33801.1| transporter, outer bacterial membrane secretin (Secretin) family [Acidobacterium capsulatum ATCC 51196] Length = 616 Score = 69.0 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 2/149 (1%) Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 G S++ S G +S+ V D G+ LH TP+V G + Sbjct: 460 LTSPGVSSALQSLGISSSSLLSTEETIPQVQYEDLGLTLHVTPSVTGRGNVA-LKLDLKL 518 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + + G + +P R+ + G + ++ + + GIP LS++P G Sbjct: 519 DTLEGQSLNSIPVLNDRELTAITTVKPGSSAMIMSSMSQQLSNAVTGIPGLSELPGFGNA 578 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426 NS ++ + + I TP +V+ V + Sbjct: 579 -TNSDASKNISRLVIVVTPRIVRRVHAEE 606 >gi|83859353|ref|ZP_00952874.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii HTCC2633] gi|83852800|gb|EAP90653.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii HTCC2633] Length = 146 Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 52/97 (53%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 AA++ + + + ++ + ++ ++++P D V+V +P AD +++ RT+++ GK Sbjct: 7 AAALVMTLGLGVAQAREFVVTADQAGLIRLPGDASGVIVGNPGIADAMLYDSRTLFVTGK 66 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 G+ N+I++ G+ + D+++ + + R Sbjct: 67 VFGRTNLIVLDEAGRVLYTSDLVVTQPDSQTVQVFRS 103 >gi|227818617|ref|YP_002822588.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii NGR234] gi|36958873|gb|AAQ87298.1| CpaC [Sinorhizobium fredii NGR234] gi|227337616|gb|ACP21835.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii NGR234] Length = 172 Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 3/126 (2%) Query: 1 MRYLQRTFF--TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI-SIGLNKV 57 MR + R + + +L + + + A + + + + + ++ Sbjct: 1 MRVVPRHVVPGHIGAGWLVPALLACTLFGAAQAAEDRPPTTALEPTRQTEGVVRVIVDFA 60 Query: 58 IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 L + +++ +PT A + +T+ L GK G N+I++ G ++ N+ + + Sbjct: 61 RPLILARPASTLIIGNPTIAQATLSDDKTVILTGKTPGSTNLIVMDAAGAEVANIILDVA 120 Query: 118 RDIAHL 123 L Sbjct: 121 AAGGRL 126 >gi|153008055|ref|YP_001369270.1| hypothetical protein Oant_0719 [Ochrobactrum anthropi ATCC 49188] gi|151559943|gb|ABS13441.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188] Length = 139 Score = 68.2 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 11/127 (8%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 + R F + + S+ + I++ ++ IL++ Sbjct: 1 MTRRLFALGGFGMVSAMGLAFMTVFAA-----------IPASAEDYIALETSQARILRLA 49 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V++ +P+ AD VV +T+ L GK+ G N++++ G+ +L+ ++++ R+ Sbjct: 50 RPADSVVIGNPSIADAVVQDAQTIVLTGKDFGVTNIVVMDKQGEPILDRELVVSRNARGT 109 Query: 124 EMTLRRF 130 R+ Sbjct: 110 TRIYRQA 116 >gi|110632963|ref|YP_673171.1| hypothetical protein Meso_0606 [Mesorhizobium sp. BNC1] gi|110283947|gb|ABG62006.1| conserved hypothetical protein [Chelativorans sp. BNC1] Length = 167 Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 43/107 (40%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 + + P + + V + + + ++ +L + ++V + Sbjct: 9 LALAVLLVTPPAEAGGDPLLAVEQTVAYERAGAVRLTIDFAELLVLDEPASTIIVGNSAI 68 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 A + RT+ L G+ G N+I++ +G+++ NL + + HL Sbjct: 69 AAASLTDDRTLILTGRTAGATNLIVLDAEGEEIANLVLEVVAAGNHL 115 >gi|220923688|ref|YP_002498990.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060] gi|219948295|gb|ACL58687.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060] Length = 169 Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 20/137 (14%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M+ + T + ++ L S P++++ + + + IL Sbjct: 1 MKRFRPTLHGVAAVALASLLPAMSQ--------------------AADTLDLTVGHSQIL 40 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + V + + DP AD + T+ + GK +G N+I + G ++L + + Sbjct: 41 RPGKAVGTIAIGDPDIADATTAAGGTILVTGKKIGTTNIIALDETGSEVLASTLRVVPID 100 Query: 121 AHLEMTLRRFIADSNIR 137 + ++ I Sbjct: 101 RRPKYSVDVIKGGQRIE 117 >gi|315497470|ref|YP_004086274.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48] gi|315415482|gb|ADU12123.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48] Length = 141 Score = 67.8 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 44/103 (42%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A +S KI + N + +P V+V +P ADV V RT+Y+ G+ Sbjct: 12 ALTALLSAGAAEAASKIVVEKNHSTRVVLPASAGSVIVGNPEVADVTVVDSRTIYIMGRG 71 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 G+++V + G+ + + D+++ + + + I Sbjct: 72 FGRSSVSVTDSAGRNIFDADVMVGTPVEGGVTVYKGLKPSTMI 114 >gi|163757621|ref|ZP_02164710.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica DFL-43] gi|162285123|gb|EDQ35405.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica DFL-43] Length = 136 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 47/99 (47%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80 P +L A + + I + ++ IL++ V V++ + ADV Sbjct: 6 PVRRRLAIAAFGMAIAVLSPLTAVADEDLIRVFMDHARILKLDRTVSKVIIGNAAVADVT 65 Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V PRT+ L GK+ G N++++ +G+ +++ IL+ D Sbjct: 66 VSDPRTIVLTGKSYGTTNLVILDQEGEAIVDERILVSVD 104 >gi|304320642|ref|YP_003854285.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis HTCC2503] gi|303299544|gb|ADM09143.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis HTCC2503] Length = 178 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 2/156 (1%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A + + + ++ + LN + + ++V +P ADV V + + LFGK Sbjct: 8 AVIAATALAPTAQAGEMWLTLNDARFHETAKPISSIVVGNPAIADVTVRTKTNIILFGKM 67 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G + L G+ + L + + ++ L+ V + + G Sbjct: 68 PGATTITLFDARGEVIDRLALKVRNASNNVVT-LQAGENRYTFSCTTVCEQIPAIGDGSN 126 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 ++ A ++E R ++ S V+ L Sbjct: 127 ESRAELA-SVAEQAQQAVTRASAGDNPSNSVVESLE 161 >gi|23016187|ref|ZP_00055946.1| COG0304: 3-oxoacyl-(acyl-carrier-protein) synthase [Magnetospirillum magnetotacticum MS-1] Length = 142 Score = 67.5 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 42/88 (47%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 + AA++ + + + + L I+L + V+ V+V +P ADV V P ++ Sbjct: 5 LPPLLAALVWAAPQAAQASEALELPLGGAIVLPMRGGVRTVVVGNPAIADVSVDGPGSVT 64 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILI 116 +FGK G +++ + G + +++ Sbjct: 65 VFGKGPGATSLVALDAGGGVLAERQVVV 92 >gi|13474655|ref|NP_106224.1| hypothetical protein mll5591 [Mesorhizobium loti MAFF303099] gi|14025410|dbj|BAB52010.1| mll5591 [Mesorhizobium loti MAFF303099] Length = 129 Score = 67.1 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 37/87 (42%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 I + +N+ I+++ ++V +P AD V T+ L GK G Sbjct: 4 AATSLITPARAAADIEVTMNQAKIVKLSRPADTIVVGNPAIADASVQDASTIVLTGKGFG 63 Query: 96 QANVILIGHDGKQMLNLDILIERDIAH 122 N++++ +G +++ + + R A Sbjct: 64 VTNLVVLDQEGSPIVDAQVTVVRQAAS 90 >gi|260461953|ref|ZP_05810198.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] gi|259032200|gb|EEW33466.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] Length = 141 Score = 67.1 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 41/91 (45%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A V G I + +N+ I+++ ++V +P+ AD V T+ L G Sbjct: 11 AALLAATCLVVPARAGTGIEVTMNQAKIVKLSRPADTIVVGNPSIADASVQDASTIVLTG 70 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAH 122 K G N++++ +G +++ + + R A Sbjct: 71 KGFGVTNLVVLDQEGSPIVDAQVTVVRQAAS 101 >gi|300021849|ref|YP_003754460.1| hypothetical protein Hden_0314 [Hyphomicrobium denitrificans ATCC 51888] gi|299523670|gb|ADJ22139.1| conserved hypothetical protein [Hyphomicrobium denitrificans ATCC 51888] Length = 170 Score = 67.1 bits (162), Expect = 7e-09, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 A I + + ++ +L +P +V+V +P+ ADV + + + GK Sbjct: 23 AAIVALSAAGASAGDLIVRYDQSQLLHLPRPASEVIVGNPSIADVTLQDGNLLVVTGKTF 82 Query: 95 GQANVILIGHDGKQMLNLDILIERD 119 G NVI + + + +++ERD Sbjct: 83 GITNVIALDAAHNVIQDQRVMVERD 107 >gi|190889877|ref|YP_001976419.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652] gi|190695156|gb|ACE89241.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652] Length = 136 Score = 66.7 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 12/129 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A + + ++ +L++ V V+V + AD V +T+ L G++ Sbjct: 15 AVFGVSGISAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G N++L+ DG +L+ E L + +RV ++ VL Sbjct: 75 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122 Query: 154 IQDSQRAVE 162 Q +Q+A + Sbjct: 123 EQHAQQAAD 131 >gi|319785612|ref|YP_004145088.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171500|gb|ADV15038.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 140 Score = 66.7 bits (161), Expect = 9e-09, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 41/91 (45%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A ++ G I + +N+ I+++ ++V +P AD V T+ L G Sbjct: 11 AALLAVSSFVAPAMAGAGIEVTMNQAKIVKLSRPADTIVVGNPAIADASVQDASTIVLTG 70 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAH 122 K G N++++ DG +++ + + R A Sbjct: 71 KGFGVTNLVVLDTDGSPIVDEQVTVVRQAAS 101 >gi|218506995|ref|ZP_03504873.1| pilus subunit transmembrane protein [Rhizobium etli Brasil 5] Length = 151 Score = 66.3 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 12/129 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A + + ++ +L++ V V+V + AD V +T+ L G++ Sbjct: 15 AVFGVSGISTAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G N++L+ DG +L+ E L + +RV ++ VL Sbjct: 75 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122 Query: 154 IQDSQRAVE 162 Q +Q+A + Sbjct: 123 EQHAQQAAD 131 >gi|218671456|ref|ZP_03521126.1| pilus subunit transmembrane protein [Rhizobium etli GR56] Length = 135 Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 12/128 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A + + ++ +L++ V V+V + AD V +T+ L G++ Sbjct: 15 AVFGVSGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G N++L+ DG +L+ E L + +RV ++ VL Sbjct: 75 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122 Query: 154 IQDSQRAV 161 Q +Q+A Sbjct: 123 EQHAQQAA 130 >gi|144897438|emb|CAM74302.1| conserved hypothetical protein, secreted [Magnetospirillum gryphiswaldense MSR-1] Length = 138 Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 40/88 (45%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89 A ++ V + + +G + + V V++ DP ADV V S + L Sbjct: 4 AFFAAVILTAFAVSSARADTLELGAGQSRRVDAGRGVAQVVIGDPKVADVSVDSAGRIQL 63 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIE 117 FGK G ++ ++G +G +L+ +++ Sbjct: 64 FGKRAGSTSLTVLGRNGAVLLDHTVVVR 91 >gi|295701132|ref|YP_003610133.1| type II secretory pathway component PulD-like protein [Burkholderia sp. CCGE1002] gi|295441455|gb|ADG20622.1| type II secretory pathway component PulD-like protein [Burkholderia sp. CCGE1002] Length = 538 Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 87/275 (31%), Gaps = 38/275 (13%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229 + A K++ N QV L+V ++ + Q G + + + Sbjct: 271 DTREAADRMGKLLAQENAVSTRQVMLRVRTLQIALNNGSQAGVNADVVFNYIQGGLARYA 330 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S GG + + F V++AL + + T ++G S Sbjct: 331 VSFTSPTSLSSGGGTVGLSVLQANAPFSGTNAVINALNQYGRTVQDSTQTKMTLNGLPVS 390 Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335 +L T S+ T+ + G+ ++ P V +I L + Sbjct: 391 IASFQSDDYLRSTSPSAGSLTATSGGVPGLTPGTVTTGDFVNILPAVNDHNQIILSYWAD 450 Query: 336 VSEPVIGVNAGDMPSYRV-----------RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 S+ + + S + K D T+ L G T+VL G + D Sbjct: 451 SSKLNGPFTSASVGSGQTLQQIQLAHTTGSKEDQTIALSDGQTVVLYGQMTDLANSTTN- 509 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + L +N+ +T I T +V Sbjct: 510 ----GGIAGITGL-----WNKSKTFQVIMLTATVV 535 >gi|327194698|gb|EGE61544.1| pilus subunit transmembrane protein [Rhizobium etli CNPAF512] Length = 136 Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 12/129 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A + + ++ +L++ V V+V + AD V +T+ L G++ Sbjct: 15 AVFGVSGISTAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G N++L+ DG +L+ E L + +RV ++ VL Sbjct: 75 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122 Query: 154 IQDSQRAVE 162 Q +Q+A + Sbjct: 123 EQHAQQAAD 131 >gi|209551755|ref|YP_002283672.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537511|gb|ACI57446.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 136 Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 12/128 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A + + ++ +L++ V V+V + AD V +T+ L G++ Sbjct: 15 AVFGVSGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G N++L+ DG +L+ E L + +RV ++ VL Sbjct: 75 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122 Query: 154 IQDSQRAV 161 Q +Q+A Sbjct: 123 EQHAQQAA 130 >gi|254225078|ref|ZP_04918692.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae V51] gi|125622465|gb|EAZ50785.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae V51] Length = 489 Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 81/274 (29%), Gaps = 26/274 (9%) Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-----------YANSSSKKVM--- 185 + L G T +S ++ E + G + K + Sbjct: 183 TSGTSSGLKGTADTAIESNSWEKIDEFLSASLGETGKFTIFEDYSLVTVKARPDKFLLLH 242 Query: 186 ---NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + L + Q+ + + + + L Q+ + I + S D G Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVG 301 Query: 243 GDFSVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + V++ L + + P + + ++ Sbjct: 302 GGLGASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTN 361 Query: 301 STGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRK 355 + T V+ G + P +L GRI + + V +P+ + Sbjct: 362 TDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENE 421 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + TV + G + LA L KD+ Q G+ LL Sbjct: 422 SMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454 >gi|48411|emb|CAA45458.1| tcpC (lipoprotein) [Vibrio cholerae] gi|383775|prf||1904214A outer membrane lipoprotein Length = 489 Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%) Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 + L + Q+ + + + + L Q+ + I + S D GG Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304 Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + V++ L + + P + + +++ Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364 Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358 T V+ G + P +L GRI + + V +P+ ++ Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 TV + G + LA L KD+ Q G+ LL Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454 >gi|90419761|ref|ZP_01227670.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans SI85-9A1] gi|90335802|gb|EAS49550.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans SI85-9A1] Length = 157 Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 52/134 (38%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 + + + ++ I+Q+ V+V +P DV V S + L G++ G N++ Sbjct: 24 AAAVDSRDVLPVEVDHARIVQIDNPAATVIVGNPAIVDVEVLSSNRLVLTGRSYGITNLV 83 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 ++ +G +++ + ++ + R+ + TV + V + ++ + Sbjct: 84 ILDANGDIVMDQQVAVQSFEDNTVRVYRQASRVTYACAPKCEPTVTIGDNVDSFGEAAQQ 143 Query: 161 VELSETFLSQSGRN 174 + + + Sbjct: 144 YAQRQGMAMDAAKQ 157 >gi|147675545|ref|YP_001216312.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae O395] gi|262168740|ref|ZP_06036435.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae RC27] gi|13377522|gb|AAK20758.1|AF325733_14 toxin-coregulated pilus biosynthesis outer membrane protein C (lipoprotein) [Vibrio cholerae] gi|146317428|gb|ABQ21967.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae O395] gi|227012652|gb|ACP08862.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae O395] gi|262022858|gb|EEY41564.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae RC27] Length = 489 Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%) Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 + L + Q+ + + + + L Q+ + I + S D GG Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304 Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + V++ L + + P + + +++ Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364 Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358 T V+ G + P +L GRI + + V +P+ ++ Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 TV + G + LA L KD+ Q G+ LL Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454 >gi|62959541|gb|AAY23728.1| hydroxylamine oxidase [Acinetobacter sp. YY-5] Length = 149 Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 7/118 (5%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TG 303 R ++ ++ AL+ T L+ P++ + + A G + T S + Sbjct: 26 NSRKAYGALIQALKANTKSNLLSTPSIVTMDNEEAYIVVGQNVPFVTGSVATQGNSTVNP 85 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 T+V D GV L P + G + L ++ EVS R T+V Sbjct: 86 YTTVERKDVGVTLKVVPHIGEGGSVRLEVEQEVSAVQESRGQATDLVTSKRAIKTSVL 143 >gi|153818067|ref|ZP_01970734.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae NCTC 8457] gi|126511413|gb|EAZ74007.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae NCTC 8457] Length = 489 Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%) Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 + L + Q+ + + + + L Q+ + I + S D GG Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304 Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + V++ L + + P + + +++ Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364 Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358 T V+ G + P +L GRI + + V +P+ ++ Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 TV + G + LA L KD+ Q G+ LL Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454 >gi|218461610|ref|ZP_03501701.1| pilus subunit transmembrane protein [Rhizobium etli Kim 5] Length = 124 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 12/128 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A + + ++ +L++ V V+V + AD V +T+ L G++ Sbjct: 3 AVFGVSGISAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 62 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G N++L+ DG +L+ E L + +RV ++ VL Sbjct: 63 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 110 Query: 154 IQDSQRAV 161 Q +Q+A Sbjct: 111 EQHAQQAA 118 >gi|296444401|ref|ZP_06886366.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] gi|296258048|gb|EFH05110.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] Length = 155 Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY-LFGKN 93 AV+ + + + + + +++ ++++P Q +++ +P ADV + + + GK+ Sbjct: 17 AVMGATSRSFAEQRALYVDIDRARVVRMPDGAQTIIIGNPLVADVTMLKANRLLVVTGKS 76 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHL 123 G N+IL+ G +++ I + L Sbjct: 77 FGTTNLILLDESGGEVVEQTITVTPASDKL 106 >gi|258620016|ref|ZP_05715056.1| Toxin coregulated pilus biosynthesis outer membrane protein C [Vibrio mimicus VM573] gi|258587749|gb|EEW12458.1| Toxin coregulated pilus biosynthesis outer membrane protein C [Vibrio mimicus VM573] Length = 489 Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%) Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 + L + Q+ + + + + L Q+ + I + S D GG Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304 Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + V++ L + + P + + +++ Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364 Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358 T V+ G + P +L GRI + + V +P+ ++ Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 TV + G + LA L KD+ Q G+ LL Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454 >gi|15640848|ref|NP_230479.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585745|ref|ZP_01675540.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae 2740-80] gi|153822050|ref|ZP_01974717.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae B33] gi|227081008|ref|YP_002809559.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae M66-2] gi|229505558|ref|ZP_04395068.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae BX 330286] gi|229510771|ref|ZP_04400250.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae B33] gi|229517892|ref|ZP_04407336.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae RC9] gi|229608577|ref|YP_002879225.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae MJ-1236] gi|254847967|ref|ZP_05237317.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae MO10] gi|255744631|ref|ZP_05418582.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholera CIRS 101] gi|262161237|ref|ZP_06030348.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae INDRE 91/1] gi|298499040|ref|ZP_07008847.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae MAK 757] gi|14548352|sp|P29481|TCPC_VIBCH RecName: Full=Toxin coregulated pilus biosynthesis outer membrane protein C; AltName: Full=TCP pilus biosynthesis protein tcpC; Flags: Precursor gi|13377553|gb|AAK20788.1|AF325734_14 toxin-coregulated pilus biosynthesis outer membrane protein C (lipoprotein) [Vibrio cholerae] gi|9655282|gb|AAF93994.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550108|gb|EAX60124.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae 2740-80] gi|126520444|gb|EAZ77667.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae B33] gi|227008896|gb|ACP05108.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae M66-2] gi|229344607|gb|EEO09581.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae RC9] gi|229350736|gb|EEO15677.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae B33] gi|229357781|gb|EEO22698.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae BX 330286] gi|229371232|gb|ACQ61655.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae MJ-1236] gi|254843672|gb|EET22086.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae MO10] gi|255737662|gb|EET93056.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholera CIRS 101] gi|262028987|gb|EEY47640.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae INDRE 91/1] gi|297543373|gb|EFH79423.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae MAK 757] Length = 489 Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%) Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 + L + Q+ + + + + L Q+ + I + S D GG Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304 Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + V++ L + + P + + +++ Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364 Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358 T V+ G + P +L GRI + + V +P+ ++ Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 TV + G + LA L KD+ Q G+ LL Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454 >gi|167583028|ref|ZP_02375902.1| putative bacteriophage-related lipoprotein [Burkholderia thailandensis TXDOH] Length = 101 Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G++ PTV+ I L+++ E+S+ V P+ R+ T L G +VL Sbjct: 1 GLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLG 59 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 GL++D + G L P + F +++ TE+ + Sbjct: 60 GLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 96 >gi|171315562|ref|ZP_02904798.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria MEX-5] gi|171099399|gb|EDT44137.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria MEX-5] Length = 142 Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 13/141 (9%) Query: 280 ISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 +SGQS G Q S T SV D G++ PTV++ I +++ Sbjct: 1 MSGQSVRLNVGSQVPTLGSISYQGPSGTPVQSVQYQDAGLIFDVQPTVMAD-SIQVKLNE 59 Query: 335 EVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 E+S V + P+ R+ TTV L G +VL GL++D + P Sbjct: 60 EMSSFVATSTGVNNSPTKNTRQMATTVNLKDGEVVVLGGLVQDTDTRSTNS-PG-----W 113 Query: 394 LGALFRNSRFNREETEIFIAA 414 L ++ TE+ + Sbjct: 114 LPKFLDGHSASKGRTEVLLVL 134 >gi|254513594|ref|ZP_05125658.1| Bacterial type II and III secretion system protein [Rhodobacteraceae bacterium KLH11] gi|221532103|gb|EEE35100.1| Bacterial type II and III secretion system protein [Rhodobacteraceae bacterium KLH11] Length = 499 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 14/230 (6%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + V + + +G + S T + + G ++ L + S Sbjct: 271 IEVAVFFIDTSKTDTFAVGLEGSGTHGAISGAVGALTGSGVATLTNDFGSINFQALAKNS 330 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 T+A L A+ + S ++T T D G+ Sbjct: 331 SVVDYRLASTIAQSGTIAPIALPALVN----YVSSIGETKNEDGTTTTTVETDTIDTGIS 386 Query: 316 LHFTPTVLSPGRIGLRIQ------TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 +H P ++ RI L + TE+ + G +P R L G T++ Sbjct: 387 IHALPRLVRDNRIQLSLTLVQNDLTELEDFDTGDGTVQLPKIDQRAIQNDSLLAPGETLI 446 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L+G +D + G +G L + + + + P ++ Sbjct: 447 LSGYEQDKATRSNTGT---GIAKFIG-LGGRIKGEVGKVRMVVFVRPAII 492 >gi|110636420|ref|YP_676628.1| hypothetical protein Meso_4096 [Mesorhizobium sp. BNC1] gi|110287404|gb|ABG65463.1| conserved hypothetical protein [Chelativorans sp. BNC1] Length = 137 Score = 65.1 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 42/91 (46%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89 A ++ + I I +N+ I+++ V++ +P AD VV +T+ L Sbjct: 8 ALFFAIMLAAAIAGAEARADIGIVMNQAKIIKLVRPADTVVIGNPEIADAVVQDAQTIVL 67 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDI 120 GK G N++ + +G+ +++ + + R Sbjct: 68 TGKGFGVTNIVALDVEGRPIMDEQVRVSRQT 98 >gi|289827429|ref|ZP_06546041.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 389 Score = 65.1 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 46/142 (32%), Gaps = 12/142 (8%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342 Query: 274 EPTLTAISGQSASFTSGGQHLY 295 +P++ ++ A Sbjct: 343 QPSVVTLNNIQAVLDKNITFYT 364 >gi|15963890|ref|NP_384243.1| hypothetical protein SMc04115 [Sinorhizobium meliloti 1021] gi|307315787|ref|ZP_07595301.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] gi|307320422|ref|ZP_07599839.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|15073065|emb|CAC41524.1| Hypothetical protein SMc04115 [Sinorhizobium meliloti 1021] gi|306893988|gb|EFN24757.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306898555|gb|EFN29228.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] Length = 138 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 1/101 (0%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKI-SIGLNKVIILQVPVDVQDVLVSDPTKAD 78 PS A + A + + +++ + ++ +L++ V V++ + AD Sbjct: 3 MPSAAPRAALLATTALLAIAAPGGARAAEEMMRVYMDHARVLKLDRPVSKVIIGNAEVAD 62 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V +T+ L G+N G N++++ DG M++ IL+ D Sbjct: 63 ATVADAKTIVLTGRNFGTTNLVILDQDGNAMVDERILVSID 103 >gi|328545283|ref|YP_004305392.1| Possible pilus assembly protein (CpaC) [polymorphum gilvum SL003B-26A1] gi|326415025|gb|ADZ72088.1| Possible pilus assembly protein (CpaC) [Polymorphum gilvum SL003B-26A1] Length = 157 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 43/89 (48%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + + +++ +++ + ++ V+V +P+ ADV +H T+ + GK G N+++ Sbjct: 23 AAAAETEPVAVTVDRAKVFRIEAPADTVIVGNPSIADVTMHDRFTVVVTGKTFGTTNLVI 82 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRF 130 + D + +++ I++ + R Sbjct: 83 LDKDSQPIIDEVIVVRPPETDVVTVTRNL 111 >gi|330984052|gb|EGH82155.1| hypothetical protein PLA107_03384 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 512 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 66/201 (32%), Gaps = 28/201 (13%) Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + FSF + + L +T ++ ISG+ + SG + Y Sbjct: 306 SSKGLELNIAAGDFSFLSAFNLLSTYGETKTTQSVSMDTISGEEVAIKSGQKIPYIDSIG 365 Query: 301 ST--------------GATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEP------ 339 G+T V D G+ L P + + + + + ++S Sbjct: 366 VNSNNNNGYNNSSNSLGSTDVKDVDIGLELKLKPYYDNRSKLVSIGVDLKLSSLLRFVEL 425 Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + P + + V++ +G ++++ GL+ D + + + +L Sbjct: 426 SAGNQIGTLTRPQTQEQSFTDNVKVRAGESMIIGGLMYDQLSDNRSNLAMLDD-----YK 480 Query: 398 FRNSRFNREETEIFIAATPFL 418 + T +FI P + Sbjct: 481 TASKSAKVTRTAMFILIRPTV 501 >gi|295690803|ref|YP_003594496.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC 21756] gi|295432706|gb|ADG11878.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC 21756] Length = 132 Score = 64.8 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 41/80 (51%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 N+ + + + + I L + ++DV+V DP ADV + + RT+ + GK G Sbjct: 16 NVDAAAQSRPAALPLATGQAISLSLGGAMRDVVVGDPEVADVSIVNERTLVVLGKRPGVT 75 Query: 98 NVILIGHDGKQMLNLDILIE 117 N+++ G G+ + + +++ Sbjct: 76 NLLVFGAGGRALTDRQLIVS 95 >gi|227823967|ref|YP_002827940.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234] gi|227342969|gb|ACP27187.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234] Length = 141 Score = 64.4 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 3/102 (2%) Query: 21 PSVAKLPPIKEANAAVIN---ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 P K AA + ++ + + + ++ +L++ V V++ + A Sbjct: 4 PLATKPVATLAFLAATLFGFFAAEKTDAAEQMMRVYMDHARVLKLDRPVSKVIIGNSDVA 63 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 D V +T+ L G+N G N++++ DG +++ IL+ D Sbjct: 64 DATVADSKTIVLTGRNFGTTNLVILDQDGNAIVDERILVSID 105 >gi|331650722|ref|ZP_08351760.1| bacterial type II and III secretion system domain protein [Escherichia coli M605] gi|331040432|gb|EGI12624.1| bacterial type II and III secretion system domain protein [Escherichia coli M605] Length = 127 Score = 64.4 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 9/125 (7%) Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVR 354 ++ SVT + G + P + I L I+ ++S V D P+ R Sbjct: 10 SYQDNNRPVQSVTYRNSGAIFTVKP-FIYDDVINLDIEQQLSNFVKTTTGVNDSPTLIKR 68 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T V + G IVL GL + LL P+ F + ++T+I + Sbjct: 69 DIRTQVSVRDGEIIVLGGLASSKTTETNTAFSLL---PV----FSGHASDSDKTDIIVVL 121 Query: 415 TPFLV 419 V Sbjct: 122 QARRV 126 >gi|222084464|ref|YP_002542993.1| hypothetical protein Arad_0357 [Agrobacterium radiobacter K84] gi|221721912|gb|ACM25068.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 139 Score = 64.0 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 42/88 (47%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A A + + + ++ +L++ V V+V + AD V P+T+ L G Sbjct: 14 AAMAGLMPQLSRAADDGMLRVYMDHARVLKLDRPVSKVIVGNAQVADATVADPKTIVLTG 73 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERD 119 ++ G N++L+ DG +++ IL+ D Sbjct: 74 RSFGTTNIVLLDADGNAIVDERILVSID 101 >gi|302381761|ref|YP_003817584.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides ATCC 15264] gi|302192389|gb|ADK99960.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides ATCC 15264] Length = 139 Score = 64.0 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 41/97 (42%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 A V + + + + +++G+++ + + V+V +P ADV V Sbjct: 9 AARSAAVLAGVTCLFAAGMAQAQSLNVGIDRSARVALRGSAASVIVGNPAIADVTVVDAN 68 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 T+++ GK G VI + G+ + ++++ Sbjct: 69 TLFVTGKGYGVTEVIAVDGLGRTIYQGEVIVSGGSTG 105 >gi|154250684|ref|YP_001411508.1| hypothetical protein Plav_0228 [Parvibaculum lavamentivorans DS-1] gi|154154634|gb|ABS61851.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1] Length = 172 Score = 64.0 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 44/100 (44%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 A A V + + +NK L + V+V +P+ ADV V + +Y Sbjct: 15 YTAAIGAACAGLAVSASQAADFQVEMNKSKALHLGQPASTVMVGNPSIADVTVEGSKLLY 74 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 + G++ G+ N+I + G+ +L++++ + A R Sbjct: 75 VMGRSYGRTNIIALDSSGETILDINVNVVSQSASTVTLTR 114 >gi|85713500|ref|ZP_01044490.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A] gi|85699404|gb|EAQ37271.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A] Length = 163 Score = 64.0 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 11/117 (9%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 + S+ S + P A + IS+ +++ ++++P + Sbjct: 9 PSRASVIGMSLAAVMLLGPVAAPAEV-----------TSEPISVNVDQAKLVRLPGHIAT 57 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 ++V +P ADV + + + GK G NVI + G +++ I +E + Sbjct: 58 IVVGNPLIADVTLQPGGLVVVTGKGYGATNVIAMDRAGSILVDRVIQVEGPSDQVVT 114 >gi|329917057|ref|ZP_08276428.1| type II and III secretion system protein [Oxalobacteraceae bacterium IMCC9480] gi|327544637|gb|EGF30102.1| type II and III secretion system protein [Oxalobacteraceae bacterium IMCC9480] Length = 537 Score = 63.6 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 75/258 (29%), Gaps = 47/258 (18%) Query: 199 KVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR--- 253 V I +V G Q + + G + + A+ + Sbjct: 231 DVNIFQVDLKDNSDTGIQWNKLAWAGTPGLAANPASTATTAVTPAVAGTTAATTAATNIG 290 Query: 254 --------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 FS + +++ L+ ++ ++ P L ISG S G Sbjct: 291 NAVSGGIAGLGLGLVLSSSRFSVDMLINFLQTQGNVKAISRPRLAVISGTKGSLRVGQST 350 Query: 294 LYKTVSSSTGATSVTTH-------DYGVVLHFTPTVLSPG---RIGLRIQTEVS--EPVI 341 Y + + +TSV G+ L RIGL I VS + Sbjct: 351 TYVSKVGTNFSTSVNQVTTETRDLKTGLDLALFGDFSDNTVYTRIGLSISEIVSLNKFTA 410 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P+ R+ +T + G I+L G+ + G S Sbjct: 411 LGTDLTLPTTADREINTVIRARPGDMILLGGITINRDASDIRR----------GVTQNGS 460 Query: 402 RFNREETEIFIAATPFLV 419 +E+ +A +V Sbjct: 461 SDTVTRSELVLALKSKVV 478 >gi|153842373|ref|ZP_01993497.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) [Vibrio parahaemolyticus AQ3810] gi|149745386|gb|EDM56637.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) [Vibrio parahaemolyticus AQ3810] Length = 356 Score = 63.6 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 22/209 (10%), Positives = 58/209 (27%), Gaps = 35/209 (16%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + + T + ++++ L+I + QV Sbjct: 59 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 117 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231 ++ I + + ++G + T + + + Sbjct: 118 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGDG 177 Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + F V + + L AL++ + ++ P L + Sbjct: 178 VGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 237 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + A G + Y SSS Sbjct: 238 KPAYIEQGTEIPYLESSSSGATALQNYAH 266 >gi|308094756|ref|ZP_07663037.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AN-5034] gi|308089670|gb|EFO39365.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AN-5034] Length = 449 Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 22/203 (10%), Positives = 59/203 (29%), Gaps = 33/203 (16%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + + T + ++++ L+I + QV Sbjct: 243 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 301 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231 ++ I + + ++G + T + + + Sbjct: 302 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGVG 361 Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + F V + + L AL++ + ++ P L + + Sbjct: 362 IDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKP 421 Query: 285 ASFTSGGQHLYKTVSSSTGATSV 307 A G + Y SSS + Sbjct: 422 AYIEQGTEIPYLESSSSGATSVT 444 >gi|99035082|ref|ZP_01314871.1| hypothetical protein Wendoof_01000288 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 413 Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 19/179 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++ +N + QV ++ I EV D G + Sbjct: 235 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLQDGTKSII 284 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295 + ++ ++ L++ ++ P + AI+ Q A + H+Y Sbjct: 285 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 344 Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDM 348 S+ T T + + GVVL P++ I + I +S D+ Sbjct: 345 DIQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDI 403 >gi|159184220|ref|NP_353258.2| hypothetical protein Atu0226 [Agrobacterium tumefaciens str. C58] gi|159139548|gb|AAK86043.2| PilQ [Agrobacterium tumefaciens str. C58] Length = 127 Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 37/70 (52%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + +N +L++ V V+V + AD V T+ L G++ G N++L+ +G + Sbjct: 22 LRVSMNHARVLRLDRPVSKVIVGNSKVADATVADATTIVLTGRSFGTTNLVLLDAEGNPI 81 Query: 110 LNLDILIERD 119 ++ IL+ D Sbjct: 82 VDERILVSID 91 >gi|325291663|ref|YP_004277527.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3] gi|325059516|gb|ADY63207.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3] Length = 136 Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 37/70 (52%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + +N +L++ V V+V + AD V T+ L G++ G N++L+ +G + Sbjct: 31 LRVSMNHARVLRLDRPVSKVIVGNSKVADATVADATTIVLTGRSFGTTNLVLLDAEGNPI 90 Query: 110 LNLDILIERD 119 ++ IL+ D Sbjct: 91 VDERILVSID 100 >gi|281356847|ref|ZP_06243337.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316405|gb|EFB00429.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 478 Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 79/272 (29%), Gaps = 51/272 (18%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------PSKSFAADFGGKFVSEGGD 244 Q+T T+ EVR L+ IG ++ + G +F GG + Sbjct: 188 RPAPQITFNFTLYEVRESTLRDIGIEYLAWKNGPGLNIFSVGWDAFGLTSGGTAAMQAMS 247 Query: 245 FSVKGVLDRFSFET-VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + G L F+ + L+++ ++T + S T + + + Sbjct: 248 GPLGGFLFAPQFDASFIRLLQQSGKAEIKNSASITVSN----SDTQSSELYFNPQFENIT 303 Query: 304 ATSVTTHDYGV-VLHFTPTVLS------PGRIGLRIQTEVSE------------------ 338 + GV L TP + + L Sbjct: 304 KSDNDKTSVGVGTLGLTPGLNQLYLKIIQPIVNLHYGLPQDGYPAAEEFSMNVYKPGAYA 363 Query: 339 ---------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 V+ N + + +LA +D + Sbjct: 364 KYPGTVFFGYDVQAANVVERNNVGAELVETSQIVGNTLIQLNHETILAEWNRDQEVEQTI 423 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 G+P L IPIL LF + + E+T +++ T Sbjct: 424 GVPFLMDIPILKYLFSTTTTSTEKTRFYLSVT 455 >gi|241589623|ref|YP_002979648.1| hypothetical protein Rpic12D_4759 [Ralstonia pickettii 12D] gi|240868335|gb|ACS65994.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 596 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 43/316 (13%), Positives = 91/316 (28%), Gaps = 39/316 (12%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS---SKKVMNLLN 189 D+ I+ E + + V RA +S S + + +++ Sbjct: 277 DAPIKSEATNISEVESVKSSIGTIMTRAGSISADPALGSITLTDTKEAVDKADEIVKFST 336 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFV 239 V +++ + +V Q + S S G Sbjct: 337 SVLSKMVLVRLQLIQVTTKDNGQAAVNWNAVMTKALEHIPGFQLSSISPVSLIGQSGGLN 396 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G + ++ ALE + T E L+ + + + Y + + Sbjct: 397 NSGSIGLNITSGGFTGTQAIVQALEELGRVSTTTEIPLSIQNRHGMYYNVRQTYSYVSGT 456 Query: 300 SST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341 + + G L P+V S G I + + + S Sbjct: 457 TPATATAGGTGGVPGITTAQDQVGFKLMIYPSVTSRGSINMTVSIDQSTLQGLDKFTSGS 516 Query: 342 --GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI-PLLSKIPILGALF 398 +P+ A + +GGT++L G + Q + G+ P +P++ Sbjct: 517 GANQQTVQLPNTNGEGATIDAIVNNGGTLILTGFEQKQNQFDRRGLAP---DVPLIAG-- 571 Query: 399 RNSRFNREETEIFIAA 414 + + + T I Sbjct: 572 GSKAASTQRTTTIIIL 587 >gi|301167753|emb|CBW27337.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 459 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 6/185 (3%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + S G +S ++ L+ F E +++ + + ++A P + Sbjct: 271 SASSEVLALGLDKISNNLYALIRNDLNSFIGENIINFENKRVKLSSIATPEIITRVNNEG 330 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 + G + + S T+ G+ + T L I+TE+S P+ A Sbjct: 331 EISIGSEIPFTRKSKEEYVTN--WKFAGLKIK-TKLEKENNEYFLNIETELSRPMQSSGA 387 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 K + V++ G ++ + + IQ +P LSKIP+LG LF +S Sbjct: 388 ST---ISSNKTKSRVKITQGKSLKITDIGHQGIQHQNTSLPYLSKIPLLGKLFTSSSEIE 444 Query: 406 EETEI 410 I Sbjct: 445 TYKNI 449 >gi|254293210|ref|YP_003059233.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814] gi|254041741|gb|ACT58536.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814] Length = 166 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 41/89 (46%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 + +I + +++ +L + + ++V +P A V VH T+ L G + G N+I Sbjct: 58 AANPAQENEIDVYIDQTQLLHLGTPMGSIIVGNPDVATVAVHDNHTLLLTGLSFGTTNLI 117 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRR 129 ++ G+ + +++ +T+ R Sbjct: 118 VLDSVGRPIHKSQLMVSERTGSGTLTVAR 146 >gi|149177451|ref|ZP_01856055.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797] gi|148843784|gb|EDL58143.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797] Length = 1668 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 34/57 (59%) Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P GGT++L G+ + + G+P+L+K+P + LF+N+ RE + + TP ++ Sbjct: 1600 PDGGTVLLGGVKRLREGRSMAGVPILNKLPYVSRLFKNTGVGRETESLMMMVTPRII 1656 >gi|329891000|ref|ZP_08269343.1| pilQ [Brevundimonas diminuta ATCC 11568] gi|328846301|gb|EGF95865.1| pilQ [Brevundimonas diminuta ATCC 11568] Length = 129 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 46/99 (46%) Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83 + + AA++ ++ + + + + + L++ +Q+ V+V++P ADV V Sbjct: 1 MRPASLLTGLAALLVLTAPAVAQERPLDVKLDQATRVQLRAPAGSVIVANPRIADVTVTD 60 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 RT+++ GK+ G +I + G+ + + + Sbjct: 61 ARTLFITGKSYGLTEIIAVDALGRPLFQRQVAVSPGETG 99 >gi|299531109|ref|ZP_07044522.1| hypothetical protein CTS44_09997 [Comamonas testosteroni S44] gi|298721066|gb|EFI62010.1| hypothetical protein CTS44_09997 [Comamonas testosteroni S44] Length = 596 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 53/329 (16%), Positives = 103/329 (31%), Gaps = 51/329 (15%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK------KVMN 186 SN R++ + + + ++Q AV S ++Q ++ + +V+ Sbjct: 274 QSNFRIDEAGSLDIFNSFMNSLQQMVAAVPGSSIAINQGTGRFAVTTTKEAMQRIRQVVK 333 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------- 239 N + QV +++ I + + G + +S D V Sbjct: 334 SENESLTRQVRIQMDIYSITTKDGDEKGVNWGVVLNSLTSKWGATIDSPTSLVGDTAGQI 393 Query: 240 -------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + GG S V + + AL + A++ Q A T+ Sbjct: 394 GLTILSLANGGSPSSGTVGRWGGTQAAIQALNEYGTNIQHRPIEMQAMNRQWARKTNLND 453 Query: 293 HLYKTVS---------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 Y + + S + G P +L G + LR ++ V Sbjct: 454 RSYVSETLPSTSTAAGSGSVGMKTANVTTGDRFMIQPAILDNGSVQLRFGISMTNLVAMT 513 Query: 344 NAGDMPSYRVRKA----------DTTVELPSGGTIVLAGLLK----DDIQQLKEGIPLLS 389 + + +TV L +G +VL G+ + D+ ++L EG LL+ Sbjct: 514 ETTSGQGTSISRVQNPERSGIDDQSTVMLKAGQVMVLTGMARYKAKDNRRRLAEGWSLLA 573 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418 + + E E + P L Sbjct: 574 G--------GSDAQSLEREEFLVVVRPVL 594 >gi|75674503|ref|YP_316924.1| hypothetical protein Nwi_0305 [Nitrobacter winogradskyi Nb-255] gi|74419373|gb|ABA03572.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 163 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 50/123 (40%), Gaps = 14/123 (11%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 R+ +++ + ++ A P + + IS+ +++ ++++ Sbjct: 6 VRGRSRVSVIGVSFAAAILLGAATAPAE--------------VISEPISVNVDQAKLVRL 51 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 P + ++V +P ADV + + + GK G N+I + G M++ I +E Sbjct: 52 PGPIATIVVGNPLIADVTLQPGGLVVVTGKGYGATNMIAMDRAGSIMVDRVIQVEGPSDQ 111 Query: 123 LEM 125 + Sbjct: 112 VVT 114 >gi|153930563|ref|YP_001393255.1| PilN family type IV pilus biogenesis protein [Yersinia pseudotuberculosis IP 31758] gi|152958107|gb|ABS45570.1| type IV pilus/secretion system protein, PilN family [Yersinia pseudotuberculosis IP 31758] Length = 568 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 37/256 (14%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGV 250 QV KV I + ++ +G I S + A+ G G F + Sbjct: 319 SKQVLFKVVIYTITSEVSDNVGIDWDIIFKSLSGKYGINLASSSGLSTDLANGSFEILDT 378 Query: 251 LDR-----FSFETVLHALERATAIRTLAEPTLTAISGQSA------SFTSGGQHLYKTVS 299 + +L AL + + L + +A T + ++ Sbjct: 379 ATGKAAQFAGSQFMLQALSKQANVTDTKTLNLMTTNLATAGLLIGKQTTYLQRSSITSIG 438 Query: 300 SSTGATSVT-----THDYGVVLHFTPTVLSPG-RIGLRIQTEVS--------EPVIGVNA 345 S + V G + P +L+ ++ L + +++ + + Sbjct: 439 SGNSSEPVQSLEPGQITTGTNIVILPKILNDNEKMMLTMMLDITSLNKLRKIDTADKKLS 498 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP---ILGALFRNSR 402 + P + L G TI+++G + K+G+ P I+G N Sbjct: 499 IEGPDSDSSSIPQRIWLKPGETILMSGFEQIVKDGSKQGM---GD-PNNIIMG---GNMS 551 Query: 403 FNREETEIFIAATPFL 418 + ++ I TP L Sbjct: 552 GSDKKQSFVITITPIL 567 >gi|331013472|gb|EGH93528.1| type II and III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 234 Score = 62.1 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 64/228 (28%), Gaps = 19/228 (8%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G + + R T S+ + + N A QV V + E Sbjct: 7 GAMLSTSPPDRMYLSPSTGTLTVTDRPDVLSNIETYLAKTNHAITQQVLFNVKVFEATLT 66 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-----FETVLHAL 263 Q+ + +S + +S G++D + ++ A+ Sbjct: 67 DTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANSAWAGSNAIIQAI 126 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--------GVV 315 I + P++T ++ Q A G Y + SV + G Sbjct: 127 AEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSSTAITPGTITSGFN 186 Query: 316 LHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + P ++ I + + ++ +P+Y + Sbjct: 187 MTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 234 >gi|220922544|ref|YP_002497846.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060] gi|219947151|gb|ACL57543.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060] Length = 217 Score = 62.1 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 9/136 (6%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 M + L + + + I + I V I VP + DVL Sbjct: 21 MGKVGLIAILVTALSFSAVFAQEPVNI--------PKDILRINAGSVEIFAVPEPMSDVL 72 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V + ADV + S R + + K G+ N+IL+G + K + LD+L+ + +R+ Sbjct: 73 VGESRIADVAIISDRRIAVTAKAPGRTNIILMGENRKLLSKLDVLVFKAEDENGNPIRKQ 132 Query: 131 IADSNIRVEMVSDTVV 146 + I + V+ Sbjct: 133 -SGKQINTYYENGQVI 147 >gi|329847248|ref|ZP_08262276.1| outer membrane channel protein [Asticcacaulis biprosthecum C19] gi|328842311|gb|EGF91880.1| outer membrane channel protein [Asticcacaulis biprosthecum C19] Length = 158 Score = 62.1 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 22/133 (16%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M + R ++ + L ++ P++A P +++ N + + Sbjct: 1 MTFSIRAALSVTAFGLMAAVPALAGQP----------------------VTVEKNHTLRV 38 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + V+V +P ADV V RT+Y+ GK G + V + G DG+ + + ++ + Sbjct: 39 TLVAPAGTVVVGNPDIADVTVVDSRTLYIVGKGFGSSAVNVAGRDGRSLFDGEVTVTAPK 98 Query: 121 AHLEMTLRRFIAD 133 + Sbjct: 99 RGAITVYKGLKPS 111 >gi|221067014|ref|ZP_03543119.1| conserved hypothetical protein [Comamonas testosteroni KF-1] gi|220712037|gb|EED67405.1| conserved hypothetical protein [Comamonas testosteroni KF-1] Length = 596 Score = 62.1 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 54/329 (16%), Positives = 109/329 (33%), Gaps = 51/329 (15%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK------KVMN 186 SN R++ + + + ++Q AV S ++Q ++ + +V+ Sbjct: 274 QSNFRIDEAGSLDIFNSFMNSLQQMVAAVPGSSIAINQGTGRFAVTTTKEAMQRIRQVVK 333 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKF 238 N + QV +++ I + + G + G++ S D G+F Sbjct: 334 SENESLTRQVRIQMDIYSITTKDGDEKGVNWGVVLNSLTSKWGATIDSPTSLVGDTAGQF 393 Query: 239 ------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 ++ GG+ + V + + AL + A++ Q A T+ Sbjct: 394 GMTILSLANGGNPNSGTVARWGGSQAAIQALNEYGTNIQHRPIEMQAMNRQWARKTNLND 453 Query: 293 HLYKTVS---------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 Y + + S + G P +L G + LR ++ V Sbjct: 454 RSYVSETLPSTSTAAGSGSVGMKTANVTTGDRFMIQPAILDNGSVQLRFGISMTNLVAMT 513 Query: 344 NAGDMPSYRVRKA----------DTTVELPSGGTIVLAGLLK----DDIQQLKEGIPLLS 389 + + +TV L +G +VL G+ + D+ ++L EG LL+ Sbjct: 514 ETTSGQGTSISRVQNPERSGIDDQSTVMLKAGQVMVLTGMARYKAKDNRRRLAEGWSLLA 573 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418 + + E E + P L Sbjct: 574 G--------GSDAQSLEREEFLVVVRPVL 594 >gi|332161774|ref|YP_004298351.1| Bacterial type II and III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|332161787|ref|YP_004298364.1| Bacterial type II and III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666004|gb|ADZ42648.1| Bacterial type II and III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666017|gb|ADZ42661.1| Bacterial type II and III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 298 Score = 61.7 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 4/119 (3%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 +N +++A DQV ++ + E + F + G + GG Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F G+ D L A++ + + ++ P + SGQ+ + G + T + Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGN 296 >gi|332765291|gb|EGJ95516.1| hypothetical protein SFK671_5251 [Shigella flexneri K-671] Length = 422 Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 67/225 (29%), Gaps = 15/225 (6%) Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164 G + +L + NI ++ D+ V + ++ Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268 Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 ET N + ++ L+IA + L + I ++ + L +G Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDIAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + SF FG F + LD F + AL + ++ P + Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 A F + V +S+ YG +++ P G Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSVSGT 421 >gi|150398537|ref|YP_001329004.1| hypothetical protein Smed_3348 [Sinorhizobium medicae WSM419] gi|150030052|gb|ABR62169.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 140 Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 39/79 (49%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 + + + ++ +L++ V V++ + AD V +T+ L G+N G N++ Sbjct: 27 SGARAAEEMMRVYMDHARVLKLDRPVSKVIIGNSDVADATVADAKTIVLTGRNFGTTNLV 86 Query: 101 LIGHDGKQMLNLDILIERD 119 ++ DG M++ IL+ D Sbjct: 87 ILDQDGNAMVDERILVSID 105 >gi|307943136|ref|ZP_07658481.1| PilQ [Roseibium sp. TrichSKD4] gi|307773932|gb|EFO33148.1| PilQ [Roseibium sp. TrichSKD4] Length = 161 Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 40/76 (52%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + I + +++ +++ + ++ V+V +P ADV +H T+ + GK+ G N Sbjct: 20 VGSSAIAQEGPVTVMVDRAKVFRIQEPASTVIVGNPFIADVAMHDASTVVITGKSYGSTN 79 Query: 99 VILIGHDGKQMLNLDI 114 ++++ + + +++ I Sbjct: 80 LVILDDNNEPIIDEVI 95 >gi|323137421|ref|ZP_08072499.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC 49242] gi|322397408|gb|EFX99931.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC 49242] Length = 180 Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 8/158 (5%) Query: 17 FSSNPSVAKLPPIKEANAAVI-NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 + PS + + + +++ K + I + L+ I+++P Q +++ +P Sbjct: 23 MTLVPSFFRGALLLAFGVFGLESMATDASAKERPIRVELDYARIVRIPPGAQTLVIGNPL 82 Query: 76 KADVVVHSPRTMYLF-GKNVGQANVILIGHDGKQMLNLDILIERDIAHL--EMTLRRFIA 132 ADV + + + GK+ G N+I++ G Q+ + + L + + R Sbjct: 83 VADVTMLRNSQLMVITGKSFGTTNLIVLDRTGAQVGESIVTVAPAEDKLVVQRGMHRESY 142 Query: 133 DSNIR----VEMVSDTVVLHGMVRTIQDSQRAVELSET 166 N R V++ D+ + + ++ A + Sbjct: 143 SCNPRCAKAVDLADDSQYMSQTIDAVKAHDGAATSTRR 180 >gi|308094760|ref|ZP_07663039.1| fimbrial assembly protein [Vibrio parahaemolyticus AN-5034] gi|308089697|gb|EFO39392.1| fimbrial assembly protein [Vibrio parahaemolyticus AN-5034] Length = 73 Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 41/70 (58%) Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S N ++E Sbjct: 2 AIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSYENVGKSE 61 Query: 410 IFIAATPFLV 419 + I TP +V Sbjct: 62 LLIFVTPKVV 71 >gi|148258230|ref|YP_001242815.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1] gi|146410403|gb|ABQ38909.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1] Length = 145 Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 39/76 (51%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ +++ ++++P V ++V +P ADV + S + + GK+ G N I + G+ + Sbjct: 16 IAVNVDQAKLVKLPDRVATLVVGNPMIADVTLQSGGIIVVTGKSYGATNFIAMDRGGQVL 75 Query: 110 LNLDILIERDIAHLEM 125 ++ I + L Sbjct: 76 VDRQIQVAGPTDRLVT 91 >gi|163785750|ref|ZP_02180256.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1] gi|159878981|gb|EDP72979.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1] Length = 363 Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 71/234 (30%), Gaps = 33/234 (14%) Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + + + I + +R ++NI V ++ + ++ Sbjct: 142 QLLQYTQVQQNKQIKS-QQAPKRISPNANIN------------TVNISRNRKEKPKIIAE 188 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + + + NL+ + QV + I EV + LK+IG + I GS Sbjct: 189 KTTNTLVIYANRLEYEAIKNLVENLDKQKKQVLITALITEVSQKALKEIGVRWQILGSYG 248 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH--------------ALERATAIR 270 G + G + G GVL + L+R T Sbjct: 249 GAAFKGGLSTEGFYNLLGSTNFAAGVLSSSGRNVSISGNTLFFPDLLFLLSLLDRGTGFN 308 Query: 271 TLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTP 320 ++ P + + A+ + K + + + G+ L P Sbjct: 309 IISSPKILTMDNTEATINVSQVTPFASSLKFDVNGNPIINYDYKEVGLKLKVLP 362 >gi|325275755|ref|ZP_08141633.1| type II and III secretion system protein [Pseudomonas sp. TJI-51] gi|324099115|gb|EGB97083.1| type II and III secretion system protein [Pseudomonas sp. TJI-51] Length = 76 Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFN 446 +PILGA FRNS R+ETE+ + TP LV+P+A+ P +H + FF Sbjct: 5 LPILGAFFRNSTMRRDETELLMIVTPHLVQPLAVNAKLPPLPGEHLRNYDPSWGRLFFLE 64 Query: 447 RVN 449 N Sbjct: 65 NGN 67 >gi|316933043|ref|YP_004108025.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1] gi|315600757|gb|ADU43292.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1] Length = 162 Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 42/95 (44%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 + + + G IS+ +++ ++++P D+ ++V +P ADV + + + Sbjct: 16 PSLLLGLLSASATAGTEDSISVNVDQAKLIRLPQDIATIVVGNPLIADVTLQPGGMVVVT 75 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 GK G NVI + G + + I +E + Sbjct: 76 GKGYGATNVIAMDRKGAIVADRLIQVEGPSDKVVT 110 >gi|86748911|ref|YP_485407.1| hypothetical protein RPB_1788 [Rhodopseudomonas palustris HaA2] gi|86571939|gb|ABD06496.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 164 Score = 61.3 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 43/88 (48%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 ++S G IS+ +++ ++++P ++ ++V +P ADV + + + GK G Sbjct: 24 SLSVASAGTEDTISVSVDQAKLIRLPQNISTLVVGNPLIADVAMQPGGMVVVTGKGYGAT 83 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEM 125 NVI + G + + I +E + + Sbjct: 84 NVIAMDRKGAVIADRLIQVEGPMDKVVT 111 >gi|157165775|ref|YP_001467405.1| protein yitk [Campylobacter concisus 13826] gi|157101562|gb|ABV23530.1| hypothetical protein CCC13826_2274 [Campylobacter concisus 13826] Length = 128 Score = 60.9 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 36/77 (46%) Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 E ++ ++ P ++ ++ L G +VL+G+ K + + G+P+L I +L L Sbjct: 49 EDILSQSSSFTPIVSKKELKSSYSLKRGDVLVLSGINKKTNAKQRNGVPVLKDIWLLKYL 108 Query: 398 FRNSRFNREETEIFIAA 414 F + + + + + Sbjct: 109 FSVEQDSEINSVLTLTI 125 >gi|121726048|ref|ZP_01679347.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae V52] gi|121631530|gb|EAX63900.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae V52] Length = 250 Score = 60.9 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 64/211 (30%), Gaps = 9/211 (4%) Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 + L + Q+ + + + + L Q+ + I + S D GG Sbjct: 7 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 65 Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSG---GQHLYKTVSS 300 + V++ L + + P + + Sbjct: 66 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 125 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358 T V+ G + P +L GRI + + V +P+ ++ Sbjct: 126 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 185 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 TV + G + LA L KD+ Q G+ LL Sbjct: 186 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 215 >gi|213621880|ref|ZP_03374663.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 52 Score = 60.9 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%) Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 2 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQ 51 >gi|218530650|ref|YP_002421466.1| hypothetical protein Mchl_2699 [Methylobacterium chloromethanicum CM4] gi|218522953|gb|ACK83538.1| conserved hypothetical protein [Methylobacterium chloromethanicum CM4] Length = 159 Score = 60.9 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 + S L ++ + + V E +S+ ++ ++++P Q Sbjct: 1 MPRLRSALLPATASAAIMMVVF------VGQAHANEPVPQGIVSVQVDNAKVIRLPEKTQ 54 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V+V +P AD+ + + L GK+ G N+I + G + I ++ A + Sbjct: 55 TVVVGNPMIADITLQKNGVVVLTGKSFGTTNLIALDGKGAMLAESTISVQAPQASI 110 >gi|146338128|ref|YP_001203176.1| hypothetical protein BRADO1025 [Bradyrhizobium sp. ORS278] gi|146190934|emb|CAL74939.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 145 Score = 60.9 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 39/76 (51%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ +++ ++++P V ++V +P ADV + S + + GK+ G N I + G+ + Sbjct: 16 IAVNVDQAKLVKLPDRVATLVVGNPMIADVTLQSGGIIVVTGKSYGATNFIAMDRGGQVL 75 Query: 110 LNLDILIERDIAHLEM 125 ++ I + L Sbjct: 76 IDRQIQVAGPTDRLVT 91 >gi|114705461|ref|ZP_01438369.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506] gi|114540246|gb|EAU43366.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506] Length = 156 Score = 60.9 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 13/109 (11%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 + + L + V P + EA + I+I ++ ILQ+ V+ Sbjct: 6 LRAGLLGTLAILVGSTPAVAEAKKDM-------------IAIAVDHARILQIDRGAGTVI 52 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + +P D+ V S + L GK+ G NVI++ D +++ + ++ Sbjct: 53 IGNPAIVDIEVLSEERLVLTGKSYGITNVIILDRDNSVLMDEQVAVQTF 101 >gi|189348545|ref|YP_001941741.1| type II secretory pathway component [Burkholderia multivorans ATCC 17616] gi|189338683|dbj|BAG47751.1| type II secretory pathway component [Burkholderia multivorans ATCC 17616] Length = 518 Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 84/276 (30%), Gaps = 40/276 (14%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229 + A + K++ N QV + V ++ + Q G + ++ + Sbjct: 251 DTKEAADNIGKLLKHENAISTRQVAITVRTLQIALNKGSQAGVNADVVFNAMHAGLARYA 310 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286 + + GG V + F V++AL + T ++G S Sbjct: 311 ISFTSPTSLATGGGAVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVS 370 Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335 +L T SS T+ + G+ ++ P V +I L + Sbjct: 371 VASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 430 Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383 S+ + S + ++ D T+ L G T+VL + Sbjct: 431 SSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTTNT 490 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GI L +N+ +T I +V Sbjct: 491 GIAGL-----------TGSWNKSKTFQVIMLKATVV 515 >gi|27376555|ref|NP_768084.1| hypothetical protein blr1444 [Bradyrhizobium japonicum USDA 110] gi|27349696|dbj|BAC46709.1| blr1444 [Bradyrhizobium japonicum USDA 110] Length = 165 Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 38/81 (46%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 I++ +++ ++++P V ++V +P ADV + + + GK G N I + Sbjct: 31 STADTIAVNVDQAKLVRLPGKVATIVVGNPLIADVTLQPGGMIVVTGKGYGATNFIALDR 90 Query: 105 DGKQMLNLDILIERDIAHLEM 125 G+ +++ I +E L Sbjct: 91 GGEILVDRQIQVEGPSDRLVT 111 >gi|163756987|ref|ZP_02164094.1| type II general secretion pathway (GSP) D protein [Kordia algicida OT-1] gi|161323106|gb|EDP94448.1| type II general secretion pathway (GSP) D protein [Kordia algicida OT-1] Length = 612 Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 9/115 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V ++V + +V + + + G I + S S + + + G S Sbjct: 479 VLIEVMLIDVSKLSVVETGISWGIGDEPTQTSGSLFPTTNLTLGANTVNRVIGGFDGFGS 538 Query: 256 FE---------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 F + A+E+ I+ + P ++ ++G A+ ++G Y + Sbjct: 539 FNLGKVVPEFFANISAMEQDGDIKIRSTPKISTLNGHRATLSNGTTSYYAVTQRN 593 >gi|161522585|ref|YP_001585514.1| type II secretory pathway component PulD-like protein [Burkholderia multivorans ATCC 17616] gi|160346138|gb|ABX19222.1| type II secretory pathway component PulD-like protein [Burkholderia multivorans ATCC 17616] Length = 534 Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 84/276 (30%), Gaps = 40/276 (14%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229 + A + K++ N QV + V ++ + Q G + ++ + Sbjct: 267 DTKEAADNIGKLLKHENAISTRQVAITVRTLQIALNKGSQAGVNADVVFNAMHAGLARYA 326 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286 + + GG V + F V++AL + T ++G S Sbjct: 327 ISFTSPTSLATGGGAVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVS 386 Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335 +L T SS T+ + G+ ++ P V +I L + Sbjct: 387 VASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 446 Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383 S+ + S + ++ D T+ L G T+VL + Sbjct: 447 SSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTTNT 506 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GI L +N+ +T I +V Sbjct: 507 GIAGL-----------TGSWNKSKTFQVIMLKATVV 531 >gi|86355860|ref|YP_467752.1| hypothetical protein RHE_CH00201 [Rhizobium etli CFN 42] gi|86279962|gb|ABC89025.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 102 Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 36/66 (54%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 ++ +L++ V V+V + AD V +T+ L G++ G N++L+ DG +L+ Sbjct: 1 MDHARVLKLDRPVSKVIVGNAQVADATVADAKTIVLTGRSFGTTNLVLLDADGNAILDER 60 Query: 114 ILIERD 119 IL+ D Sbjct: 61 ILVSID 66 >gi|166219|gb|AAA32222.1| gene IV protein [Enterobacteria phage f1] Length = 51 Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 GL G+P LSKIP++G LF + + EE+ +++ +V+ + Sbjct: 1 GLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 51 >gi|166216|gb|AAA32221.1| gene IV [Enterobacteria phage f1] Length = 60 Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%) Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + + R TTV L G T++L GL G+P LSKIP++G Sbjct: 2 DSLSSSTQASDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIG 59 >gi|134287561|ref|YP_001109727.1| Type II secretory pathway component PulD-like protein [Burkholderia vietnamiensis G4] gi|134132211|gb|ABO59946.1| Type II secretory pathway component PulD-like protein [Burkholderia vietnamiensis G4] Length = 534 Score = 59.8 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 85/276 (30%), Gaps = 40/276 (14%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229 + A + K++N N QV + V ++ + Q G + ++ + Sbjct: 267 DTKEAADNIGKLLNHENAISTRQVAITVRTLQIALNKGSQAGMNADVVFNAMHAGLARYA 326 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286 + + GG V + F V++AL + T ++G S Sbjct: 327 ISFMSPTSLATGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVS 386 Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335 +L T SS T+ + G+ ++ P V +I L + Sbjct: 387 IASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 446 Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383 S+ + S + ++ D T+ L G T+VL + Sbjct: 447 SSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTTNT 506 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GI L +N+ +T I +V Sbjct: 507 GIAGL-----------TGSWNKAKTFQVIMLKATVV 531 >gi|92116017|ref|YP_575746.1| hypothetical protein Nham_0395 [Nitrobacter hamburgensis X14] gi|91798911|gb|ABE61286.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 161 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 11/117 (9%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 + S+ S ++ P A IS+ +++ ++++P + Sbjct: 9 RSRASVVGLSLATAILLGPTAALAEV-----------TSDPISVNVDQAKLVKLPGHIAT 57 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 ++V +P ADV + + + GK G NVI + G +++ I +E + Sbjct: 58 IVVGNPLIADVTLQPGGLVVVTGKGYGATNVIAMDRAGSILVDRVIQVEGPSDQVVT 114 >gi|28173601|gb|AAO32809.1| XpsD [Xanthomonas oryzae pv. oryzae] Length = 65 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 IP LSK+P++GALF + N E+ + TP +V+ ++ D Y Sbjct: 1 IPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVR--NPQEARNLTDEY 48 >gi|91977981|ref|YP_570640.1| hypothetical protein RPD_3516 [Rhodopseudomonas palustris BisB5] gi|91684437|gb|ABE40739.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 161 Score = 59.4 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 41/87 (47%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 S +S+ +++ ++++P ++ ++V +P ADV + + + GK G N Sbjct: 24 SSAAMAAGEDTVSVNVDQAKLIRLPQNISTLVVGNPLIADVTLQPGGMVVVTGKGYGATN 83 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEM 125 VI + G + + I +E + ++ Sbjct: 84 VIAMDRKGAVIADRLIQVEGPMDNVVT 110 >gi|188581656|ref|YP_001925101.1| hypothetical protein Mpop_2404 [Methylobacterium populi BJ001] gi|179345154|gb|ACB80566.1| conserved hypothetical protein [Methylobacterium populi BJ001] Length = 160 Score = 59.4 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 38/82 (46%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + +S+ ++ ++++P Q V+V +P AD+ + + L GK+ G N+I Sbjct: 30 NDPAPQGAVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNLIA 89 Query: 102 IGHDGKQMLNLDILIERDIAHL 123 + G + I ++ A + Sbjct: 90 LDGRGAMLAESTISVQAAQASI 111 >gi|172064588|ref|YP_001812238.1| type II secretory pathway component PulD-like protein [Burkholderia ambifaria MC40-6] gi|171998073|gb|ACB68989.1| type II secretory pathway component PulD-like protein [Burkholderia ambifaria MC40-6] Length = 536 Score = 59.4 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 85/275 (30%), Gaps = 38/275 (13%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229 + A + K++ N QV + V ++ + G + ++ + Sbjct: 269 DTKEAADNIGKLLQHENAISTRQVAVTVRTIQISLSKGSEAGANADVVFNAMHAGLARYA 328 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286 + + GG V + F ++AL + T ++G S Sbjct: 329 ISFASPTSLATGGGSVGVSVLRPDAPFSGTNAAINALNKYGRTVQDNTMTKMTLNGLPVS 388 Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335 +L T S+ + + G+ ++ P V +I L + Sbjct: 389 VASFQSDDYLRSTSPSAGTLNATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 448 Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVLAGLLKDDIQQLKEG 384 S+ + + S + ++ D T+ L G T+VL G + D Sbjct: 449 SSKLNGPFTSAGVGSGQTQQQIQLAHTIGTKDDQTIALSDGQTVVLYGAMTDHADSTTNA 508 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G L + +N+ +T I +V Sbjct: 509 --------GIGGLTGS--WNKSKTFQIIMLKATVV 533 >gi|304392391|ref|ZP_07374332.1| PilQ [Ahrensia sp. R2A130] gi|303295495|gb|EFL89854.1| PilQ [Ahrensia sp. R2A130] Length = 171 Score = 59.4 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 52/116 (44%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 + S + A PI A + K + + +++ ++++ V+V +P Sbjct: 12 AIRSFALAGAFFAPIIAATVLPVAALADGHSAKKHLEVVVDRARVVRIAKPADTVIVGNP 71 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 + D + RT+ L G+ G N+I++ DG +++ ++++ + +L R+ Sbjct: 72 SIVDATIQDARTLVLTGRLFGVTNIIVLDSDGDPIVDETVVVKGEETNLVHVYRQA 127 >gi|90425192|ref|YP_533562.1| hypothetical protein RPC_3708 [Rhodopseudomonas palustris BisB18] gi|90107206|gb|ABD89243.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 165 Score = 59.4 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 19/114 (16%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 + I L + P++A+ I++ +++ +++ P + ++V Sbjct: 19 IGIGLLCALPAMAETA-------------------NGIIAVNVDQAKLVRFPARIATIVV 59 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 +P ADV + + + GK G NVI + G+ +L+ I +E + Sbjct: 60 GNPLIADVTLQPGGIIVVTGKGYGATNVIAMDRAGEVLLDRVIQVEGPTDQVVT 113 >gi|254473697|ref|ZP_05087092.1| conserved hypothetical protein [Pseudovibrio sp. JE062] gi|211957083|gb|EEA92288.1| conserved hypothetical protein [Pseudovibrio sp. JE062] Length = 173 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84 I A A I+ + + + + ++ + ++ + +++ +P+ ADV VH Sbjct: 21 ASGAILTAMIAGISATSIAPAYA-DVEVVADQAKVFRLEEPAETIILGNPSIADVTVHDR 79 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 T+ + GK+ G N++++ + ++ I + ++A Sbjct: 80 LTIVITGKSYGTTNLVVLNDASEPVVEELITVTAEMAG 117 >gi|254418061|ref|ZP_05031785.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3] gi|196184238|gb|EDX79214.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3] Length = 138 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 +++ +++ +Q+ V+V +P ADV V T+++ GK G V+ + G Sbjct: 27 SGALNVEIDRSARVQLNGAASSVIVGNPQIADVTVVDANTLFIVGKGYGVTEVVAVDGVG 86 Query: 107 KQMLNLDILIERDIAH 122 + + +I++ Sbjct: 87 RTLFQREIVVTGGSTG 102 >gi|254561617|ref|YP_003068712.1| hypothetical protein METDI3204 [Methylobacterium extorquens DM4] gi|254268895|emb|CAX24856.1| conserved hypothetical protein; putative exported protein precursor [Methylobacterium extorquens DM4] Length = 160 Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 E +S+ ++ ++++P Q V+V +P AD+ + + L GK+ G N+ Sbjct: 28 RANEPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNL 87 Query: 100 ILIGHDGKQMLNLDILIERDIAHL 123 I + G + I ++ A + Sbjct: 88 IALDGKGAMLAESTISVQAPQASI 111 >gi|255609758|ref|XP_002539091.1| conserved hypothetical protein [Ricinus communis] gi|223508756|gb|EEF23292.1| conserved hypothetical protein [Ricinus communis] Length = 279 Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 41/163 (25%), Gaps = 40/163 (24%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-------------------------------- 221 QV ++ I E R + +G + Sbjct: 118 RQVLIEARIVEARDTFGRALGVRLGGGDLRAQRGGDGGYSIGGDNRVAIGTGFDNANASA 177 Query: 222 -------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 ++SG + S S+ L A+E + ++ Sbjct: 178 GASGQAVNTSGSFVNLPGKLSNVANSGTFAMSIFNAAANRFLTLELSAMESDGQGKIISS 237 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 P L A G ++ Y + GAT++ + L Sbjct: 238 PRLVTADQTKALIEQGTEYPYSVTAP-NGATTIAFKKAVLKLE 279 >gi|163851899|ref|YP_001639942.1| hypothetical protein Mext_2476 [Methylobacterium extorquens PA1] gi|240139022|ref|YP_002963497.1| hypothetical protein MexAM1_META1p2441 [Methylobacterium extorquens AM1] gi|163663504|gb|ABY30871.1| conserved hypothetical protein [Methylobacterium extorquens PA1] gi|240008994|gb|ACS40220.1| conserved hypothetical protein; putative exported protein precursor [Methylobacterium extorquens AM1] Length = 160 Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 E +S+ ++ ++++P Q V+V +P AD+ + + L GK+ G N+ Sbjct: 28 RANEPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNL 87 Query: 100 ILIGHDGKQMLNLDILIERDIAHL 123 I + G + I ++ A + Sbjct: 88 IALDGKGAMLAESTISVQAPQASI 111 >gi|83312848|ref|YP_423112.1| hypothetical protein amb3749 [Magnetospirillum magneticum AMB-1] gi|82947689|dbj|BAE52553.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 150 Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + I L +L + + V+V +P ADV V PRT+ +FGK G + ++ G Sbjct: 25 TEALEIPLGGATLLPMRGVARSVVVGNPAIADVTVDGPRTITVFGKAPGGTTLAVLDAGG 84 >gi|325274960|ref|ZP_08140963.1| type IVB pilus formation outer membrane protein [Pseudomonas sp. TJI-51] gi|324099907|gb|EGB97750.1| type IVB pilus formation outer membrane protein [Pseudomonas sp. TJI-51] Length = 427 Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 3/108 (2%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 +N N QV L V + V +G ++ ++ + + Sbjct: 315 LNGENSNITKQVLLNVKVLSVTLTDKDDLGIDWNLVYTAVNGKWGIGWKNVTQADAAAVQ 374 Query: 245 FSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 SV + + ++ AL + + T+ P++T ++ Q Sbjct: 375 GSVSILDTSSQWAGSNLLVKALAQQGRVSTITSPSVTTLNLQPVPVQV 422 >gi|311109976|ref|YP_003982827.1| lipoprotein 4 [Achromobacter xylosoxidans A8] gi|310764665|gb|ADP20112.1| lipoprotein 4 [Achromobacter xylosoxidans A8] Length = 556 Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 87/263 (33%), Gaps = 39/263 (14%) Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 N + V +V V + G + S++ + + AA G + G Sbjct: 299 NRMLTRRVRLVFEEVV---VSVNDQHDAGIDWRVIYSTASAAAAGAAPTGTMSTAAGTIA 355 Query: 246 SVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 S F + ++ AL+ L+A++ + ++ Y +TG Sbjct: 356 SATVGSGPFKGSDAIIKALDEIGTTTRSTAIPLSALNRRPITYADRKTFSYINEVQTTGL 415 Query: 305 TSVTT-----------------HDYGVVLHFTPTVLSPGRIGLRIQTE--VSEPVIGV-- 343 TS + G L P G+I L I + +++P+ + Sbjct: 416 TSSDSSNGSFSTVPNVSVRQKDVTVGQFLTLVPDAQEDGQILLTISYDSTINDPLQTIKF 475 Query: 344 ----NAGDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 N ++ VR V L SG +V+AG KD Q ++ K PI L Sbjct: 476 GDSKNGIEIQQLTVRGNGMVQQVALQSGQPLVIAGFQKDQDQTSRQR--FDEKAPI---L 530 Query: 398 FRNSRFNREETEI--FIAATPFL 418 F + + + I T + Sbjct: 531 FGGANSTNNQK-LYNLIIVTAQV 552 >gi|257486850|ref|ZP_05640891.1| type II and III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 102 Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 4/92 (4%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I + + ++ +P+Y + V+L SG T++L+G +++ + I Sbjct: 13 SINMSSKPTFEPFTSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI- 69 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFL 418 P L + ++ + + TP + Sbjct: 70 GTGS-PGFFGLGGGRKRTSSKSVLVVLITPIV 100 >gi|262064151|gb|ACY07135.1| IV [Enterobacteria phage f1] Length = 294 Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 82/264 (31%), Gaps = 36/264 (13%) Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114 + +I+ P V V DV + R ++ + N ++G + + D Sbjct: 43 GESVIV-SPDVKGTVTVYSS---DVKPENLRNFFIS--VLRANNFDMVGSNPSIIQKYDP 96 Query: 115 LIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + I L + + V +D V + ++ + E F+ Sbjct: 97 NNQDYIDELPSSNNQEYDDNSAPSGGFFV-PQNDNVTQTFKINNVRAKDLI-RVVELFVK 154 Query: 170 QSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILK 211 + S NLL ++ DQ+ ++ I EV++ Sbjct: 155 SNTSKSSNVLSIDG-SNLLVVSAPKDILNNLPQFLSTVDLPTDQILIEGLIFEVQQGDTL 213 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 F + + S GG F G+ + + AL+ + + Sbjct: 214 DFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGDVLGLSVRALKTNSHSKI 269 Query: 272 LAEPTLTAISGQSASFTSGGQHLY 295 L+ P + +SGQ S + G + Sbjct: 270 LSVPRILTLSGQKGSISVGQNVPF 293 >gi|220923702|ref|YP_002499004.1| hypothetical protein Mnod_3797 [Methylobacterium nodulans ORS 2060] gi|219948309|gb|ACL58701.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060] Length = 151 Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 ++ + +++ +V I++ + V+V DP ADV V + T+ Sbjct: 1 MRAFAIIPLLAIVTSASAADSLALRPGQVEIVKTSRGARTVVVGDPDIADVTVANESTIV 60 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + K G +++L+ G++ L + I Sbjct: 61 VTAKENGVTDLVLLDESGREFLRKQLQIGSP 91 >gi|118589699|ref|ZP_01547104.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614] gi|118437785|gb|EAV44421.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614] Length = 154 Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 38/75 (50%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV + V + + + + +++ + ++ V+V +P ADV + T+ + GK+ Sbjct: 13 AVALSTTVAVAQDGPVLVTVDRAKVFRIEDGAAAVIVGNPFIADVAMFDQNTVVITGKSY 72 Query: 95 GQANVILIGHDGKQM 109 G N++++ D K + Sbjct: 73 GTTNLVILDGDNKPI 87 >gi|281356795|ref|ZP_06243286.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316922|gb|EFB00945.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 502 Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 80/266 (30%), Gaps = 59/266 (22%) Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------DFGGKFVSEGGDFSVKGVLDRF 254 T+ EVR IL+ +G + + G + A GG + G Sbjct: 196 TVYEVRDSILRDLGIDYLGWRNGPGLNLFQAGMDALSLSSGGSSAVNAASGAFGGFFFAP 255 Query: 255 SFET-VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-STGATSVTTHDY 312 F+ + L++ +LT + SA ++ G + + V Sbjct: 256 QFDASFIRILQQDGLANIANTASLTVANSDSAVYSIGFHPESQAIFKRDNDQLQVGVSGL 315 Query: 313 GVVLHFTPTVLSPGR--------------------------------------------- 327 G+ P S G Sbjct: 316 GMQGGVKPPESSTGAENPLLTGSAPPPPLALSVTAPRICFRGEADARTGQVPYRLSDYNT 375 Query: 328 -----IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + + +V++ V N G + + + L SG +L K+ + Sbjct: 376 TVNALVTFNYKIQVADVVERNNYGAELA-EIDQLSGDCNLLSGEEKILTMWHKESEVEQT 434 Query: 383 EGIPLLSKIPILGALFRNSRFNREET 408 G+P LS+IPIL LF + NRE+T Sbjct: 435 IGVPFLSEIPILKHLFSTTTINREKT 460 >gi|120611389|ref|YP_971067.1| Type II secretory pathway component PulD-like protein [Acidovorax citrulli AAC00-1] gi|120589853|gb|ABM33293.1| Type II secretory pathway component PulD-like protein [Acidovorax citrulli AAC00-1] Length = 566 Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 58/196 (29%), Gaps = 19/196 (9%) Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 + VTI V + G + + A + G + + Sbjct: 331 LIDVTIYNVSMTKEETAGVSMDLVYRRLNGNGVGVAGAAPLQPANGQPGRITLSFSDPAS 390 Query: 257 ET-----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 V AL+ + + AI+GQ + F Y T S+T +V T Sbjct: 391 RLAGSRMVAEALQSVGNVALYKKGQFMAINGQPSPFQVVDDEEYNTSVSATQTANVGTQL 450 Query: 312 Y--------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKAD 357 G+ + P +L RI L+ Q E+S A P + Sbjct: 451 ATQKAVLTTGLTGNVLPLILGDNRILLQYQMEISAVSNMNPAVVNGILTYSPKRSRQSFQ 510 Query: 358 TTVELPSGGTIVLAGL 373 L G IVL G Sbjct: 511 QQAFLKDGDAIVLFGY 526 >gi|240142222|ref|YP_002966732.1| hypothetical protein MexAM1_META2p0544 [Methylobacterium extorquens AM1] gi|240012166|gb|ACS43391.1| Hypothetical protein MexAM1_META2p0544 [Methylobacterium extorquens AM1] Length = 575 Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 63/246 (25%), Gaps = 55/246 (22%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G I + P + G VS+ + G S + L + Sbjct: 314 GTSTGIGLTQIDPGRVMDLTKDGLVVSQTSLGRLGGAFGATSITGAIDFLSTFGTTKVDQ 373 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------------------VTTHDYGVV 315 + +SG SG Q Y G + + G+ Sbjct: 374 NVQMKTLSGTEVKLRSGQQVPYVRGVQLAGLGAGGYGNGYGGGYGGLGSSLTDKVETGLT 433 Query: 316 LHFTPTVLSPGRI-GLRIQTEVSEP--------VIGVNAGDMPSYRVRKADTTVELPSGG 366 + TP S + + + ++ E + P + ++ V + +G Sbjct: 434 MEVTPYFDSDAEVVTMEVDVKLKEILSFVELNAGNQIGTFTQPLTQDQELTNIVRMQAGR 493 Query: 367 TIVLAGLLKDDIQQLK----------------EGIPLLSKIPILGALFRNSRFNREETEI 410 T+V+ GL D G+ F N + + Sbjct: 494 TVVIGGLQSDSESYNGTEPTALRNATATRAGGSGV------------FGNRSQKVKRNAL 541 Query: 411 FIAATP 416 FI P Sbjct: 542 FIILRP 547 >gi|294012342|ref|YP_003545802.1| type II secretory pathway component PulD [Sphingobium japonicum UT26S] gi|292675672|dbj|BAI97190.1| type II secretory pathway component PulD [Sphingobium japonicum UT26S] Length = 726 Score = 57.1 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 37/340 (10%), Positives = 78/340 (22%), Gaps = 151/340 (44%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------- 243 +QV ++ I E+ K++G Q I + +G + + ++ ++ G Sbjct: 357 TRREQVLVEAIIVEISDAAAKKLGVQFLIGSTKTGFAATNYSNASPNILTLAGAIAADRL 416 Query: 244 --------------------------------------------DFSVKGVLDRFSFETV 259 + F + Sbjct: 417 GETTTTVVAPDGTRTETRTRENGDLANTLQQAAVDSLMNATGGFGGVATSLGRNGIFGAI 476 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGV 314 ++A++ T L+ P++ + Q AS G Q T + +V D G+ Sbjct: 477 INAVKSDTDSNILSTPSVMTLDNQKASILVGQQVPVTTGEALSQNFDNQFRTVQRQDVGI 536 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY----------------------- 351 L P + + G I L ++ EVS V+ + Sbjct: 537 KLEVKPQINTGGAIKLFLKQEVSSVAGPVSNNNSDLIINKREIETTVTVDDGEILALGGL 596 Query: 352 -------------------------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + R Sbjct: 597 LDDNERKTIERIPLLSDIPGLGELFKSR-------------------------------- 624 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +R +T + + P +++ Sbjct: 625 ---------------SKSRTKTNLMVFIRPTILRSKEDAQ 649 >gi|322834629|ref|YP_004214656.1| type II and III secretion system protein [Rahnella sp. Y9602] gi|321169830|gb|ADW75529.1| type II and III secretion system protein [Rahnella sp. Y9602] Length = 482 Score = 57.1 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 56/189 (29%), Gaps = 13/189 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q + I + ++ L++ G +++ G S GG G Sbjct: 252 RQFVVTYKIFTLNKEKLEEYGAGLNMSYIDGGSSVVIDTSMMDML--GGGMTVAGGADRA 309 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTS---------GGQHLYKTVSSSTGA 304 S + L+AL T + L + + + + K Sbjct: 310 LSIDAKLNALYSLTGSKVLQSGSFVTRNNTPIPLNMTNSQHYVSGRTRTVNKDSGDEDVE 369 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVEL 362 G TP V++ GR+ + S+ + +P+ + + + Sbjct: 370 IETAEIITGTSFIITPRVMTDGRVEVTSGFTKSQLNSIDVFDTVQLPNVTTTEMFNSTAV 429 Query: 363 PSGGTIVLA 371 G +++A Sbjct: 430 NPGSLLMVA 438 >gi|171318753|ref|ZP_02907894.1| type II secretory pathway component PulD-like protein [Burkholderia ambifaria MEX-5] gi|171096069|gb|EDT40997.1| type II secretory pathway component PulD-like protein [Burkholderia ambifaria MEX-5] Length = 534 Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 84/276 (30%), Gaps = 40/276 (14%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229 + A + K++ N QV + V ++ + Q G + ++ + Sbjct: 267 DTKEAADNIGKLLKQENAISTRQVAITVRTIQIALNRGSQAGMNADVVFNAMHAGLARYA 326 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286 + + GG V + F V++AL + T ++G S Sbjct: 327 ISFTSPTSLATGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVS 386 Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335 +L T SS T+ + G+ ++ P V +I L + Sbjct: 387 VASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 446 Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383 S+ + S + ++ D T+ L G TIVL + Sbjct: 447 SSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTIVLYGAITDQADSTTNT 506 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GI + +N+ +T I +V Sbjct: 507 GIAGI-----------TGSWNKAKTFQIIMLKATVV 531 >gi|315121901|ref|YP_004062390.1| hypothetical protein CKC_00755 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495303|gb|ADR51902.1| hypothetical protein CKC_00755 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 206 Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 1/89 (1%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTM 87 + K+I I + + I+L+ +V++ + DV+ +++ Sbjct: 86 ATKPRTTNTPSPQPTTNDEKRIRIAIGQSIVLKFDSLPSEVIIGNDQITDVLALEKEKSI 145 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILI 116 + GK G N+I++G K +L DIL Sbjct: 146 VITGKKSGLTNIIVLGAGNKVLLETDILS 174 >gi|218780600|ref|YP_002431918.1| hypothetical protein Dalk_2758 [Desulfatibacillum alkenivorans AK-01] gi|218761984|gb|ACL04450.1| hypothetical protein Dalk_2758 [Desulfatibacillum alkenivorans AK-01] Length = 351 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 32/171 (18%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 E L+A E + P++ +S + G L V S Sbjct: 202 PDLEAALYAAENRNELMMARRPSVKTLSNEEVLIKHGWDILIDPVQEVGSLGSADYDSMD 261 Query: 314 VVLHFTPTVLSPGRIGLRIQTEV------SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + LH TP ++ I + + E S+ N+G+M +E+ G T Sbjct: 262 ITLHATPRIIRNEHIFMNLSVETIWYLNASDHGKYNNSGEMG----------IEVNQGET 311 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 I+++G+ + + +E E + TP + Sbjct: 312 IIISGITLPSSIKEETE----------------RGEFEDEREFLVFITPTI 346 >gi|327543373|gb|EGF29799.1| type II and III secretion system protein [Rhodopirellula baltica WH47] Length = 376 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 1/122 (0%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L+ I V D Q G G + + G E + + Sbjct: 255 PQVVLEAIICVVSPDSGFQFGLDWQHAVEMDGVKELSLSASGLALNGELSQAGLDAIFSD 314 Query: 254 F-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F + + L + A P + A G+ A+ + + + + Sbjct: 315 FGNTSAFVRLLSEKGYLTIRATPHVMAKDGEQANIAINRETFFSVQPPGSTGNNSVFFQQ 374 Query: 313 GV 314 + Sbjct: 375 NI 376 >gi|108763383|ref|YP_628353.1| serine/threonine kinase family protein [Myxococcus xanthus DK 1622] gi|108467263|gb|ABF92448.1| serine/threonine kinase family protein [Myxococcus xanthus DK 1622] Length = 478 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 2/104 (1%) Query: 5 QRTFFTMMSI-FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 +R + L + K + +++AA + I + + V L VP Sbjct: 365 RRGILALAGAGSLVVLGVLLWKPSFLFQSDAATPRAESLGRMAASLIVLRVGDVHELAVP 424 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 +Q + V +P+ +V V + L GK G ++I H G+ Sbjct: 425 G-LQRIAVGEPSLVEVTVPRQGVVRLKGKEEGSTDLITWSHAGE 467 >gi|8896026|gb|AAF81209.1|AF247502_4 PilNa [Salmonella enterica subsp. enterica serovar Dublin] gi|7274588|gb|AAF14814.2| PilNa [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|32454458|gb|AAP83030.1| PilNa [Salmonella enterica subsp. enterica serovar Paratyphi C] Length = 277 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 6/120 (5%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------FSV 247 QV L V + V +Q+G +I S + + + G + + Sbjct: 132 RQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNATSASVSILDSAT 191 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 ++ AL + + + Q +Y SS+T T V Sbjct: 192 GSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVAQSSTTTTTDV 251 >gi|254513511|ref|ZP_05125576.1| hypothetical protein RKLH11_4189 [Rhodobacteraceae bacterium KLH11] gi|221532515|gb|EEE35511.1| hypothetical protein RKLH11_4189 [Rhodobacteraceae bacterium KLH11] Length = 496 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 79/242 (32%), Gaps = 29/242 (11%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + V + + +G + S G+ + + A G + DF Sbjct: 271 IEIAVYFIDTSKSDTFAVGLEGS--GTHGAIAGAIGAITGNGIATIANDFGSINFQSLAE 328 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HDYG 313 +V+ T+A+ A S + S+ +TSV T D G Sbjct: 329 NSSVVD----YRLTSTIAQSGTIAPISLPRSQNYVSKTTTTPDSNGNVSTSVETATIDTG 384 Query: 314 VVLHFTPTVLSPGRIGLRIQ------TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + +H P ++ RI L + TE+ G + +P R L G T Sbjct: 385 ISIHALPRLVQNNRIHLSLTLIQNDLTELESFESGGSTVQLPKVDQRMILNDNILAPGET 444 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGAL-FRNSRFNR----EETEIFIAATPFLVKPV 422 +V +G +D + G+ G F ++ + + P ++ PV Sbjct: 445 LVFSGYEQDKATRSNTGV---------GRARFLGLGGRARGGVDKIRMVVLVRPAII-PV 494 Query: 423 AM 424 A Sbjct: 495 AG 496 >gi|318606999|emb|CBY28497.1| general secretion pathway protein D [Yersinia enterocolitica subsp. palearctica Y11] Length = 93 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 19/35 (54%) Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 IP +G LFR S+ E++ + + P +++ + Sbjct: 2 GDIPFIGGLFRQSKEKIEKSNLILFIRPTILRETS 36 >gi|170740625|ref|YP_001769280.1| hypothetical protein M446_2388 [Methylobacterium sp. 4-46] gi|168194899|gb|ACA16846.1| conserved hypothetical protein [Methylobacterium sp. 4-46] Length = 158 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 34/77 (44%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 + + ++ I+++P V+V +P ADV + + L GK+ G N+I + G Sbjct: 36 TVVVSVDNAKIIRLPERTATVVVGNPIIADVSLQRNGLVILTGKSFGTTNLIALDGSGAM 95 Query: 109 MLNLDILIERDIAHLEM 125 + I ++ + Sbjct: 96 LAESFISVQAATTSVVT 112 >gi|187921869|ref|YP_001893458.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN] gi|187720307|gb|ACD21529.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN] Length = 598 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 32/274 (11%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGP 226 + A ++ ++N V+ + + ++ R Q+G + G Sbjct: 317 TDTKDAVDRAEGIINFHRALLNKLVSYHIRVVQITRSNAGQLGVDWQALLTKALNNVPGF 376 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S + + G + + V++A+ + + + + + S Sbjct: 377 IISSTSPLTLTTAAAGSLTTKITSGQFSGTQAVVNAIAQLGYTVSTDDIPMQVQNRHSGY 436 Query: 287 FTSGGQHLYKTVSS----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + + Q Y + ++ T + + G+ TV I + + + Sbjct: 437 YDNVNQFSYVSQTTPAASTVGGTGGTPGITTSMDSVGLKFLIYGTVTDDNNISISVSMDN 496 Query: 337 SEPV---------IGVNAGDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 S G N + K A T + +GG IVLA + +Q + Sbjct: 497 SALNGPIQTFTSGQGANQQSVQEVDKNKYGASTDGIVRNGGIIVLAAHDRTQLQSQRSA- 555 Query: 386 PLLS-KIPILGALFRNSRFNREETEIFIAATPFL 418 L KIP+L + + T + + Sbjct: 556 --LGYKIPMLAG--GSVNDSDSRTTTLFVISASI 585 >gi|294784350|ref|ZP_06749641.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27] gi|294487922|gb|EFG35277.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27] Length = 407 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/141 (12%), Positives = 45/141 (31%), Gaps = 9/141 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247 QV + I ++ ++ +++GF + ++ G V + Sbjct: 267 PKQVKITSQILDISNNLFEELGFNWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 326 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303 + ++ LE + + PTL SG+ F + + + Sbjct: 327 QFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386 Query: 304 ATSVTTHDYGVVLHFTPTVLS 324 + + G+++ P ++ Sbjct: 387 YSEPIFKEAGLIMKVKPFIVK 407 >gi|330947449|gb|EGH48078.1| type II and III secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 134 Score = 54.4 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 25/79 (31%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + I ++ V + + V DP ADV V+ L G G ++++ Sbjct: 2 AERPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWT 61 Query: 104 HDGKQMLNLDILIERDIAH 122 + + Sbjct: 62 ACASAPRQSMVFVRGRATT 80 >gi|220922775|ref|YP_002498077.1| hypothetical protein Mnod_2823 [Methylobacterium nodulans ORS 2060] gi|219947382|gb|ACL57774.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060] Length = 161 Score = 54.4 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 37/89 (41%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 + + + + ++ I+++P V+V +P ADV + + L GK+ G Sbjct: 27 VAQALEAGADPGMVVVSVDNAKIIRLPERTATVVVGNPIIADVTLQRNGIVILTGKSFGS 86 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEM 125 N+I + G + I ++ + + Sbjct: 87 TNLIALDAAGTMLAESFISVQAATSSVVT 115 >gi|325274962|ref|ZP_08140964.1| PilN family type IV pilus biogenesis protein [Pseudomonas sp. TJI-51] gi|324099903|gb|EGB97747.1| PilN family type IV pilus biogenesis protein [Pseudomonas sp. TJI-51] Length = 120 Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 10/116 (8%) Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVEL 362 T G ++ P V+ + LR +S + G N ++P R V+L Sbjct: 7 TVTSGFNMNLLPYVMPGKELLLRYSINLSALKQIRQVSSGDNTIEIPEVDNRIFSQMVKL 66 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 SG T+VL+G + K G+ + ++G + + + + I + TP + Sbjct: 67 RSGETLVLSGFEQSVDNGSKAGV-GSASNWLMG---GSLKRDNSKDVIVVLITPIV 118 >gi|197336519|ref|YP_002157477.1| lipoprotein, putative [Vibrio fischeri MJ11] gi|197315222|gb|ACH64670.1| lipoprotein, putative [Vibrio fischeri MJ11] Length = 540 Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 71/235 (30%), Gaps = 18/235 (7%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 ++ + E+ ++ + + S+ + + + G + K D Sbjct: 307 IQADVYEIIWEVNDEKQVSWTAAFESASFALNAMSPTVVSDSGLGSITATKIGGDFDGSN 366 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------GATSVTT 309 + L ++ + ++ + S + T +T+ Sbjct: 367 IIGKFLNENASVYSRITNSIKTKNNIPTQLISSQDRAIVSGREVTIDSNGFAQQSTNTKL 426 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVE---LP 363 + G + P + S G+I + + + + + DM K T+ + Sbjct: 427 INEGFNITTRPRLTSDGKIDMEVIVNTKSIGDIKTFGSEEDMVQLEETKQHGTISGIPIR 486 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 SG ++VL +D + L +P R ++ + + P + Sbjct: 487 SGESVVLNAYERDLTRADLAS--LEKNLPW--WTGGGKSNKRYKSSLIVMVKPVI 537 >gi|317485728|ref|ZP_07944598.1| ribose-5-phosphate isomerase [Bilophila wadsworthia 3_1_6] gi|316923010|gb|EFV44226.1| ribose-5-phosphate isomerase [Bilophila wadsworthia 3_1_6] Length = 177 Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 47/171 (27%), Gaps = 23/171 (13%) Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH-------LYKTVSSSTGATSVTT 309 L AL L S Q + +H L + + T + Sbjct: 9 SGTLKALREWGRATQLTSAGGLLTSNQPLPVLAIKRHAYLAGMSLSTSDYNQTSEITPGE 68 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELP 363 G + P +L+ R+ L+ +S E +P R ++ Sbjct: 69 VTTGFAMTIIPHILADRRVILQYNITLSALDDMQEIDREEVYVQLPQVSTRSFAQRSKMK 128 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G T+VLAG + G L + +T + + Sbjct: 129 MGQTLVLAGFEQSRQTANNA----------FGILNTGRDADYGKTLLVVTI 169 >gi|229592009|ref|YP_002874128.1| secretory protein [Pseudomonas fluorescens SBW25] gi|229363875|emb|CAY51352.1| secretory protein [Pseudomonas fluorescens SBW25] Length = 481 Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 61/202 (30%), Gaps = 23/202 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+I + + + + ++ RD LK++G + Sbjct: 247 QKLVAELDIPKRS-IEVSLWLVDLERDELKKLGMDWG-------------------DDTN 286 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 V +D + ALER P + A F Sbjct: 287 TSTTRVLAPVDDSHLMASIGALERRRRATVATLPVILTQENVPAVFQDNHTFYMPPP--G 344 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-ADTTV 360 + T YG + P +I +R++ + + + + R ++ V Sbjct: 345 SDRTDWKPVRYGTQVSVLPRFAEANQIEMRLEVQDGRQMSEAPGREKNTAVGRVGVNSVV 404 Query: 361 ELPSGGTIVLAGLLKDDIQQLK 382 LP G + L + + + Sbjct: 405 RLPPGRRLWLGAFNRKSEGRGR 426 >gi|298155844|ref|YP_003717670.1| putative exported pilus biosynthesis protein [Escherichia coli ETEC 1392/75] gi|156121667|gb|ABU50043.1| LngD [Escherichia coli] gi|297374441|emb|CBL93503.1| putative exported pilus biosynthesis protein [Escherichia coli ETEC 1392/75] Length = 492 Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 28/204 (13%), Positives = 54/204 (26%), Gaps = 14/204 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 V+ Q L I + + ++++G +++ + G S Sbjct: 244 DNVLKKYREDNSRQFVLTYKIFTIDKKKVRKLGAAANLSYLNGGTSIGIDTSLLSSLSGA 303 Query: 242 GGDFSVKG---VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 F+ + A+ + T L T + Y + Sbjct: 304 TFGRDFIVPVENTQNFNITGKIEAIYQLTGKNVLQSGTFITRNNVPVPVNLTQTQNYISG 363 Query: 299 SS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGD 347 + S G TP VLS G I + N + Sbjct: 364 RTQTTNSLTSVSDTTIETDKVITGSSFILTPRVLSDGSIEVSSAFTKKTLNSIENFESVQ 423 Query: 348 MPSYRVRKADTTVELPSGGTIVLA 371 +P+ + T L G +++A Sbjct: 424 LPNVSTTEMFNTSVLKPGTLMMVA 447 >gi|56550580|ref|YP_161646.1| hypothetical protein RMe0022 [Cupriavidus metallidurans CH34] gi|94152701|ref|YP_582103.1| hypothetical protein Rmet_6294 [Cupriavidus metallidurans CH34] gi|56410286|emb|CAI30168.1| hypothetical protein RMe0022 [Cupriavidus metallidurans CH34] gi|93359067|gb|ABF13153.1| Type II secretory pathway, component PulD [Cupriavidus metallidurans CH34] Length = 600 Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 43/320 (13%), Positives = 109/320 (34%), Gaps = 40/320 (12%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE----TFLSQSGRNQYANSSSKK 183 + A + ++ +D L G+ ++I + V +E T + + A ++ + Sbjct: 279 AQIDAAAKAEIKEQND---LEGVKKSILPAMTMVGSAELNPATGVLTLRDTKEAVDAADE 335 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKF 238 ++ VTLK + ++ + G ++ + G + + + Sbjct: 336 IIRKQIAIYSRMVTLKFQMIDLTVSDAGEAGVDWNVVLTKALQNLPGFTVNALSPATLVS 395 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + GG + +++AL++ + + ++ + + + Y + Sbjct: 396 STAGGVGLGITSGGFNGTQAIVNALKQYGTVTSGVTIPVSMRNRHGFQYNNRRTFSYASG 455 Query: 299 SSSTGATSV----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IG 342 S+ T+ +T G L S + L I + S+ Sbjct: 456 STPATTTAGGTGGIPGIITSTATVGFKLAAYADATSRDDVNLTIALDQSKQDGPLEKFTS 515 Query: 343 VNAGDMPSYRVRKA------DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK-IPILG 395 + + S + + + +G T+++A L +DD + L + +P+L Sbjct: 516 GSGNNQQSVQTINIVGKGIPKQDIIVRNGQTVLMAALDQDDTANTRRT---LGESLPML- 571 Query: 396 ALFRNSRFNREETEIFIAAT 415 L + ++ T + AT Sbjct: 572 -LGGSQTVSKTRTFTLLLAT 590 >gi|330814465|ref|YP_004362640.1| type II secretory pathway component PulD-like protein [Burkholderia gladioli BSR3] gi|327374457|gb|AEA65808.1| type II secretory pathway component PulD-like protein [Burkholderia gladioli BSR3] Length = 531 Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 81/276 (29%), Gaps = 40/276 (14%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + A + K++N N QV + V ++ + Q G + ++ + A Sbjct: 264 DTKEAADNIGKLLNHENAISTRQVAITVRTLQIALNKGSQAGANADVVFNAMHAGLARYA 323 Query: 233 DFGGKFVSEGGDFSVKGVLDR------FSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S GV V++AL + T ++G + Sbjct: 324 VSFTSPTSLASGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVA 383 Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335 +L T SS T+ + G+ ++ P V +I L + Sbjct: 384 IASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 443 Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383 S+ + S + ++ D T+ L G TIVL + Sbjct: 444 SSKLNGPFTSVGAGSGQTQQQIQLAHTVGSKDDQTIALSDGQTIVLYGAITDQADSTTNA 503 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G L +N+ +T I +V Sbjct: 504 GFAGL-----------TGTWNKSKTFQVIMLKATVV 528 >gi|37522852|ref|NP_926229.1| hypothetical protein gll3283 [Gloeobacter violaceus PCC 7421] gi|35213854|dbj|BAC91224.1| gll3283 [Gloeobacter violaceus PCC 7421] Length = 234 Score = 53.2 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 69/232 (29%), Gaps = 43/232 (18%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q+ + I E+ L+ + A +G + + + Sbjct: 44 SQQIVFSIQIIELDGTGLQTL----------------SKAIYGTQPTTGTPASAENANRL 87 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-TGATSVTTHD 311 R + + A R + + LT SG+ A F S + + + +T Sbjct: 88 RRAIFEQVRA----GRGRLVVDTELTVGSGERAGFDSQLDMNFTLAPQDRSKPPTFSTVR 143 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-ADTTVELPSGGTIVL 370 G L F P VL G I +I+ + S P R +T+ T+ Sbjct: 144 AGNRLEFEPAVLPDGNILTKIRVDASVAAARDRNTGRPIDITRSSIYSTLTFQPNQTVAF 203 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 ++ L +P IP TE I TP LV Sbjct: 204 G-----NLTSLGTSVP----IP------------ANRTEQIILITPRLVSAT 234 >gi|171911831|ref|ZP_02927301.1| probable penicillin resistance regulatory protein [Verrucomicrobium spinosum DSM 4136] Length = 711 Score = 53.2 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 35/298 (11%), Positives = 81/298 (27%), Gaps = 67/298 (22%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++ L+ QV L+ E + A + Sbjct: 295 DQLLDQLSAHAPLQVLLETRWIE--------------LLAPPEEGGPVSTALATLQEKRT 340 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + + +L ++ ++ + + ++ P++T GQ A + ++ Sbjct: 341 ANGRANEAILSDPDYQNIIRLFSQQKGVHLVSNPSVTTRMGQKAVVEVIREVRRPGEAAK 400 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQT------EVSEPVIGVNAGDMPSYR 352 H G+ F P + G ++ + + ++E + G +P+ Sbjct: 401 GLNDD---HFVGIQNSFEPVRTADGKKVQVSMTAKLRRLAGRSIAESNALIKDGILPAGE 457 Query: 353 VRKADTT---VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 A T V L G T+ + I + Sbjct: 458 RILAFTNSAEVSLTDGETVCM-------------------DI----------GTAEDHRR 488 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 + + T +VKP + +D + + AS + G Sbjct: 489 LLLFVTSKIVKPAEA---------LTKPEDLERELNRQSTPGREHPGASRAKPVAVSG 537 >gi|253997315|ref|YP_003049379.1| NolW domain-containing protein [Methylotenera mobilis JLW8] gi|253983994|gb|ACT48852.1| NolW domain protein [Methylotenera mobilis JLW8] Length = 282 Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 62/228 (27%), Gaps = 16/228 (7%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV-TIAEVRRDILKQIGFQHSIT 220 +E L + ++ + N L + + + +V + Sbjct: 43 RFAEEVLPTIQAVIGDHGTASAIQNQLIVRTDSRTMAEVEQTISTLDTARENFTISVKRQ 102 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 SSG +++ + + R + + + T + ++ + Sbjct: 103 NISSGSNRNSTIRGRTRIGNATIQTGNDARGGRDGIQIGIE--DNQTNAQQSSQQFIRVT 160 Query: 281 SGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 G A + G Y + S D G + +I L I Sbjct: 161 DGAPAYISVGESIPYTNEWVVLTRRYAVRQVSTQFVDIGTGFTVRARSI-GSQIELEITP 219 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 S + +TV + G + + G+++D + + Sbjct: 220 TFSRLQQDG------RIEFEQLSSTVRVQRGEWVNIGGIMQDKDEVSR 261 >gi|197105562|ref|YP_002130939.1| hypothetical protein PHZ_c2099 [Phenylobacterium zucineum HLK1] gi|196478982|gb|ACG78510.1| hypothetical protein PHZ_c2099 [Phenylobacterium zucineum HLK1] Length = 489 Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 76/280 (27%), Gaps = 35/280 (12%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + ++ + R G + + +GG+ G +V +S Sbjct: 222 ILIEAFLIRDTRSANFNEGVNLLESLALQFEGTLVNYSYGGEDEGTDGQVTVTLPAVTYS 281 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 L + A P + A G+++ F GG L +S + D G+ Sbjct: 282 LNLASRDLS---RVSLEASPVVLARQGKTSKFLEGGSVLIVPLSDDSDPVE---RDVGIS 335 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELPSGGTIVL 370 L TP + + L + E+S + + + + +P G +V+ Sbjct: 336 LEVTPERIGEHDVDLTVALELSNITGQSVNNAGRGASLLQTDKSRVEASARVPFGKAVVV 395 Query: 371 AGLLKDDIQQLKEG------IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 ++ + G +P LS ++ + Sbjct: 396 GSTGSLTRRKTRTGSLTAAPVPGLS----------TKGRGASRRDVLALISVR-----RA 440 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 D S P F V A + + Sbjct: 441 EDDSGPA---FDAAAVAGRLFGEVLPAPAAYGARPSDTPD 477 >gi|320174025|gb|EFW49195.1| General secretion pathway protein D [Shigella dysenteriae CDC 74-1112] Length = 493 Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 37/178 (20%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G + S + + ++ A++ ++ L+ P++T + Q A F Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMV 492 >gi|289675698|ref|ZP_06496588.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 133 Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 24/79 (30%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + I ++ V + + V DP ADV V+ L G G ++++ Sbjct: 5 AAMPAAVEIDQGIQQEVRSVVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWT 64 Query: 104 HDGKQMLNLDILIERDIAH 122 + + Sbjct: 65 ACASAPRQSMVFVRGRATT 83 >gi|320184381|gb|EFW59193.1| General secretion pathway protein D [Shigella flexneri CDC 796-83] Length = 493 Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 37/178 (20%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G + S + + ++ A++ ++ L+ P++T + Q A F Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMV 492 >gi|332091465|gb|EGI96550.1| general secretion pathway protein D [Shigella boydii 3594-74] Length = 493 Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 37/178 (20%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235 G Q + + S + + D Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G + S + + ++ A++ ++ L+ P++T + Q A F Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMV 492 >gi|170749896|ref|YP_001756156.1| hypothetical protein Mrad2831_3496 [Methylobacterium radiotolerans JCM 2831] gi|170656418|gb|ACB25473.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM 2831] Length = 164 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 36/83 (43%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 + + +++ ++ +L++P V+V +P A+V + L GK+ Sbjct: 18 TGAAAAAGQPDLLPVVTVLVDNAKVLRLPEKTSTVIVGNPIIAEVTPQKNGVLVLTGKSF 77 Query: 95 GQANVILIGHDGKQMLNLDILIE 117 G N+I + + G + I +E Sbjct: 78 GSTNLIALDNGGAMIAETTIRVE 100 >gi|8896027|gb|AAF81210.1|AF247502_5 PilNb [Salmonella enterica subsp. enterica serovar Dublin] gi|7274591|gb|AAF44784.1| PilNb [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|32454459|gb|AAP83031.1| PilNb [Salmonella enterica subsp. enterica serovar Paratyphi C] Length = 129 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 12/118 (10%) Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTV 360 G + P + G + L++ +S+P G + +MP ++R Sbjct: 11 MMTTGFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYTKLRSLSQKT 70 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G +VL G + + + K G +LG + + + I TP L Sbjct: 71 NLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLVIIITPEL 124 >gi|281355410|ref|ZP_06241904.1| hypothetical protein Vvad_PD3516 [Victivallis vadensis ATCC BAA-548] gi|281318290|gb|EFB02310.1| hypothetical protein Vvad_PD3516 [Victivallis vadensis ATCC BAA-548] Length = 355 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 47/347 (13%), Positives = 110/347 (31%), Gaps = 42/347 (12%) Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ-- 155 NV++ + + D+ D+A + + + + + + G I+ Sbjct: 15 NVVVFDDLKDKPIFADV-SGCDLADVLDLITWLL---GVEWVERAGQYYIGGNQSKIEVL 70 Query: 156 -------DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL-KVTIAEVRR 207 ++ + ++ Q KK+ + L E V L ++ + EV Sbjct: 71 PSLGIDSKLEQVFPNAVKLVNDKIIAQGTERELKKISDALTSTLERDVALCQLKVIEVVY 130 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 D Q+G + + ++ + + S + + Sbjct: 131 DDRFQVGLDWEKSFEYAVSWENMVKNVHPVTHAA------------MSLAASVQLDQAVI 178 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVL 323 + R + + + +SG G + S+S V T G+++ + Sbjct: 179 STRYVIDTQVGILSGSKVELNIGDEIDRPIYSTSEYGNRVLSGYNTQKTGLLIGLSAYHA 238 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD-IQQLK 382 + E S PV + + K T V++ +LA + ++ Sbjct: 239 GSAWV-FDASVEHSRPVTDLQ------KTLSKVTTQVKIEDSRPFLLANVSSSGGETNIE 291 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAA----TPFLVKPVAMR 425 +G+P L ++P +G LF + + ++ + KP+ Sbjct: 292 QGVPFLCRLPWIGFLFGVYDKVHLQRDFYVCIQLLDRNRVPKPLEPA 338 >gi|153800448|ref|ZP_01955034.1| CofD [Vibrio cholerae MZO-3] gi|124124074|gb|EAY42817.1| CofD [Vibrio cholerae MZO-3] Length = 486 Score = 51.7 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 34/338 (10%), Positives = 90/338 (26%), Gaps = 37/338 (10%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRA 160 + ++ ++F +I + + G T +S Sbjct: 147 DENNVLVASVYHRYTIALDYYGENKKFETGMDISGNEATSGSGITGKSETSFESSFWDDV 206 Query: 161 VELSETFLSQS-------------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 + E +L+ + K++ + Q + I + + Sbjct: 207 ETIVEHYLTSGQYSLIKDSSLIAINARPSEFAEVNKILKKFKEDNQRQFVVTYKIFTLDK 266 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERA 266 + +G +++ G + S G + + L AL + Sbjct: 267 SKEQSLGGGVNLSHQVPGTTVGITTGMLSSLGSGINFDRQFYGDGKKLNMTGQLEALFKL 326 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---------STGATSVTTHDYGVVLH 317 T + L + + + + + + + + G Sbjct: 327 TGSKLLQSGSFITRNNSPIPLNLTNSKYFVSGRTQTKNDNNTVTDSSVETSQIVTGTSFI 386 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 TP VLS G+I + + +P+ + T + G +++A Sbjct: 387 LTPRVLSDGKIEVLSGFTKKTLNSIDLFESVQLPNVTTTEMFNTSTVTPGSLLMVARYDS 446 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + + + G +L ++ + T + + Sbjct: 447 AEESE-RNGYEVLGA--------THADNSNNNTVVMVV 475 >gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62] gi|254547834|gb|ACT57211.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62] Length = 135 Score = 51.3 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTMYLFGKNVGQANVILIGHD 105 +I I + + +ILQ V + V+V D DV+ +T+ + GKN+G N+I++GH+ Sbjct: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91 Query: 106 GKQMLNLDILI 116 +L+ +I Sbjct: 92 NDILLDTEIAT 102 >gi|217077117|ref|YP_002334833.1| secretin and TonB N terminus short domain protein [Thermosipho africanus TCF52B] gi|217036970|gb|ACJ75492.1| secretin and TonB N terminus short domain protein [Thermosipho africanus TCF52B] Length = 360 Score = 50.9 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 68/276 (24%), Gaps = 39/276 (14%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV-----TLKVT------- 201 + A ELS+ + +SS + I Q+ L V Sbjct: 106 PLRYKTASELSKVLPKELKEYILYSSSEDSITVFAPIPVASQIANIVSILDVKKKSYTAN 165 Query: 202 --IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 I +V LK A F + + F+ + Sbjct: 166 IKIIDVSESYLKSF-LLKINYSQERLNDLLSGAIFSIPLYGNYLNLLFSSTTENKDFDLI 224 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 I+ L+ + S + + T Sbjct: 225 Y-----DGNIKMLS----------GVKSSLRTSKKVLVDEIVDNKISKKAVESNISFELT 269 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P L I ++ IG + + T V + V+ + Sbjct: 270 PYFLKS---SALIDLNINLENIGTDRLG------SQVSTKVPIDFSVPKVIGAYSYLKSE 320 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 + G+ L +PI+G LF+ + E+ I Sbjct: 321 RADGGLSFLMDLPIIGNLFKQNFEKHEKRYILFVLR 356 >gi|116249977|ref|YP_765815.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254625|emb|CAK05699.1| putative pilus subunit transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] Length = 136 Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 12/128 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A + + ++ +L++ V V+V + AD V +T+ L G++ Sbjct: 15 AVFGISGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAAVADATVADAKTIVLTGRS 74 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G N++L+ DG +L+ E L + +RV + VL Sbjct: 75 FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTQRSVLSCTPNC 122 Query: 154 IQDSQRAV 161 Q +Q+A Sbjct: 123 EQHAQQAA 130 >gi|121610631|ref|YP_998438.1| hypothetical protein Veis_3705 [Verminephrobacter eiseniae EF01-2] gi|121555271|gb|ABM59420.1| hypothetical protein Veis_3705 [Verminephrobacter eiseniae EF01-2] Length = 586 Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 68/246 (27%), Gaps = 29/246 (11%) Query: 197 TLKVTI--AEVRRDILKQIGFQHSITGSSSGPSKSFA---ADFGGKFVSEGGDFSVKGVL 251 + VT V+ + G S S + S+ Sbjct: 343 MVNVTFDLYSVKTSDADEKGLDWSSVFQSLSRKYGLTFSTPSLSTGATAGSIGASMVWGN 402 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISG------QSASFTSGGQHLYKTVSSST--- 302 + + +L L + ++T ++G + A+ + + S S Sbjct: 403 GTATTKAMLALLNQYGEASQHRPISITTLNGMWDTKSRLATEGYLKETVPGLSSGSGAAG 462 Query: 303 -GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDM-----PSY 351 T G P V + + LR +S+ V + + P Sbjct: 463 APGLKTDTITTGDQFAVLPYVQNDNTVLLRYSIGLSDLLGMFDVTTGSGATLQKVQTPRT 522 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 A +T+ L G V+ GL + ++ L +P++ L R + Sbjct: 523 ESLNASSTIALAPGEAAVITGLSRLVAKRDDTR--LAENLPLV--LGGTRRLAYQREHFL 578 Query: 412 IAATPF 417 I Sbjct: 579 ILVRAT 584 >gi|297539539|ref|YP_003675308.1| NolW domain-containing protein [Methylotenera sp. 301] gi|297258886|gb|ADI30731.1| NolW domain protein [Methylotenera sp. 301] Length = 284 Score = 50.5 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 65/226 (28%), Gaps = 16/226 (7%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV-TIAEVRRDILKQIGFQHSITGS 222 +E L ++ ++ + N L I + +++ I + + S + Sbjct: 47 AEDILPIIQPLVGSDGTATGMQNHLIIRASPEKMIEIEQIISTLDVERQNLRITVSHQNN 106 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + + A + + + + + ++IR+ + + G Sbjct: 107 LQTNNDNVAVSGRKRIGNVTIGTNKYPRNAADGVQLDIE--NNQSSIRSNGNQFINVMDG 164 Query: 283 QSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + A G Y ++ + D P + ++ L I + Sbjct: 165 ERAFIRVGRSVPYTQEWVTLTQRYTSIQRTTEFADISTGFSVRPRSI-GNQVELEITPRI 223 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 ++ + T V + G + L G ++ + + Sbjct: 224 AQL------NQNKYIDFEELSTIVRVNRGEWLDLGGTMQQKDEVSR 263 >gi|213421917|ref|ZP_03354983.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 213 Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 12/121 (9%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D ++ + + + + + + + + + V I +V + Q+ Sbjct: 105 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 156 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G S G +F G + D +F L+ALE+++ L+ Sbjct: 157 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 212 Query: 274 E 274 + Sbjct: 213 Q 213 >gi|241207153|ref|YP_002978249.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861043|gb|ACS58710.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 136 Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 39/86 (45%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A + + ++ +L++ V V+V + AD V +T+ L G++ Sbjct: 15 AVFGISGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAAVADATVADAKTIVLTGRS 74 Query: 94 VGQANVILIGHDGKQMLNLDILIERD 119 G N++L+ DG +L+ IL+ D Sbjct: 75 FGTTNLVLLDADGNAILDERILVSID 100 >gi|288959939|ref|YP_003450279.1| hypothetical protein AZL_a02040 [Azospirillum sp. B510] gi|288912247|dbj|BAI73735.1| hypothetical protein AZL_a02040 [Azospirillum sp. B510] Length = 512 Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 87/303 (28%), Gaps = 54/303 (17%) Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 F+++ + V + V T + A +++++ + + ++V+ Sbjct: 164 FLSNRDRFAFTVPQNQAVIDSVMTDLKTLGATDITQSLRGGQVVFSASPTVYREVIQPYI 223 Query: 190 ---IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------------PS 227 V +++ + + GF + Sbjct: 224 DRLHRNMAMVRIQLAVVSLGLTDQSASGFDWNALALQFNRLQSGTTTTTTGTTTVNGTVG 283 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 + +A V+ ++ GV F+ + L + T + +SG + Sbjct: 284 GTLSAAQPPLSVNISNPGTLLGVSGVFNVAGAISFLSKFGNTDTRQNVEVHTLSGAEVTL 343 Query: 288 TSGGQHLYKTVSSST-----------------------GATSVTTHDYGVVLHFTPTVLS 324 SG Y T T G+ T G+ + TP + Sbjct: 344 RSGQTIPYVTGVGVTAVGGLGTTTAATGNAALNSPGVVGSAQTGTVQTGLTIKLTPHFDA 403 Query: 325 PGRI-------GLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLK 375 +I L E + G G P + + + V + +G T+VL GL Sbjct: 404 DNQIVTIDLNLLLNNLIEFRDLNAGNQVGILTQPVTQEQALNDIVRVVAGNTVVLGGLQT 463 Query: 376 DDI 378 D Sbjct: 464 DSR 466 >gi|281355403|ref|ZP_06241897.1| hypothetical protein Vvad_PD3509 [Victivallis vadensis ATCC BAA-548] gi|281318283|gb|EFB02303.1| hypothetical protein Vvad_PD3509 [Victivallis vadensis ATCC BAA-548] Length = 283 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 90/281 (32%), Gaps = 29/281 (10%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL-KVTIAEVRRDILKQI 213 ++ + ++ Q KK+ + L E V L ++ + EV D Q+ Sbjct: 5 SKLEQVFPNAVKLVNDKIIAQGTERELKKISDALTSTLERDVALCQLKVIEVVYDDRFQV 64 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G + + ++ + + S + + + R + Sbjct: 65 GLDWEKSFEYAVSWENMVKNVHPVTHAA------------MSLAASVQLDQAVISTRYVI 112 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVLSPGRIG 329 + + +SG G + S+S V T G+++ + + Sbjct: 113 DTQVGILSGSKVELNIGDEIDRPIYSTSEYGNRVLSGYNTQKTGLLIGLSAYHAGSAWV- 171 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD-IQQLKEGIPLL 388 E S PV + + K T V++ +LA + +++G+P L Sbjct: 172 FDASVEHSRPVTDLQ------KTLSKVTTQVKIEDSRPFLLANVSSSGGETNIEQGVPFL 225 Query: 389 SKIPILGALFRNSRFNREETEIFIAA----TPFLVKPVAMR 425 ++P +G LF + + ++ + KP+ Sbjct: 226 CRLPWIGFLFGVYDKVHLQRDFYVCIQLLDRNRVPKPLEPA 266 >gi|89885736|ref|YP_515934.1| hypothetical protein Rfer_4249 [Rhodoferax ferrireducens T118] gi|89347734|gb|ABD71936.1| hypothetical protein Rfer_4249 [Rhodoferax ferrireducens T118] Length = 483 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 65/418 (15%), Positives = 128/418 (30%), Gaps = 59/418 (14%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQ------- 96 +++ ++ +L+ + ++D AD++ H+ T+ + G +G Sbjct: 76 STSQRMPPVFDQSFVLREQTP---LAITD--VADIIRAHTGLTILINGDAIGSQRIGVDS 130 Query: 97 -ANV-----ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV--VLH 148 ++ G LD I+ + + + I V V Sbjct: 131 VTSLKSLLDSTTSRFGMTWQYLDDAIQIQQSVVRTFVIDRPGFEAITVGSAGAAAKTVTR 190 Query: 149 GMVRTIQDSQRAV----ELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVT 201 I D+ R V +S S S + ++ ++ LL + +VTL Sbjct: 191 DPWADILDAIRVVAPRARVSAMRSSNSITVADSPANVARIAELLEVDDRQASKKVTLLWK 250 Query: 202 IAEVRRDILKQ--IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 + + + + +GF + TG S + G + + L E + Sbjct: 251 LVVFTKSVGGETGLGFNYLKTGGRKISFASPTSLVGTIASALKVESISGESLGS---EMI 307 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----------- 308 L+ L ++ + + + Q+ G + +S ST + + Sbjct: 308 LNLLNQSGSTVVVRDG--ITEIAQNGRSDFGTEKEVFYISRSTPGVASSSTTSASVGLEQ 365 Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVE 361 + G+ F TV R+ L VS P R + V Sbjct: 366 ASVKVGLAGAFGATVFDSERMTLGYDFTVSSLDQLKSVTSAGTTLQSPETTKRYSRGQVP 425 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGI-PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + G T +L+ D + GI P I L + + + TP L Sbjct: 426 IKHGETWILSAETSDSNSFDRRGILPAQGSI-----LGGSETAGSSRDQWLLLVTPIL 478 >gi|317133812|ref|YP_004089723.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7] gi|315450274|gb|ADU23837.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7] Length = 467 Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 19/175 (10%) Query: 49 KISIGLNKV-----IILQVPVDVQD--VLVSDPTKADVV--VHSPRTMYLFGKNVGQANV 99 ++ + + +L + + VLV D AD +P + + GK G + Sbjct: 206 EMELTYGESDTVSVTLLPFDAENKRLTVLVGDTDIADYEFDQTNPNGIIVTGKKAGTTTI 265 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEM-TLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDS 157 G ++ DI + + + +N + +V G Sbjct: 266 TFTGDSWTDTIDDDISAVLTVTVNKADSTVTVAPTANELTYTGSGQDLVAKGETEDGTIV 325 Query: 158 QRAVELSETFLSQSGRNQYANSSSK--------KVMNLLNIAGEDQVTLKVTIAE 204 E ++T + ++ ++ KV+ N + V++KVTIAE Sbjct: 326 YAIGESADTAPNADAFSENIPGGTEAGDYYVWYKVIGDENHNDSEPVSVKVTIAE 380 >gi|167620934|ref|ZP_02389565.1| Type II secretory pathway, component PulD [Burkholderia thailandensis Bt4] Length = 63 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ T L G +VL GL++D + G L P + +++ TE+ Sbjct: 2 NTRQLQTVTRLKDGEVVVLGGLIQDRNTSARSGYAWL---P---SFLDGRSSSKQRTEVL 55 Query: 412 IAA 414 + Sbjct: 56 LVL 58 >gi|262360319|gb|ACY57040.1| putative membrane transport protein [Yersinia pestis D106004] Length = 104 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%) Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + +A P L Q+AS G Y A ++ + + + TP +L G Sbjct: 20 NQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNG 79 Query: 327 RIGLRIQTEVSEPVIGV 343 +I L ++ + P I + Sbjct: 80 KIILDLKISQNMPGITI 96 >gi|283788190|ref|YP_003368055.1| Type IV pilus biogenesis protein [Citrobacter rodentium ICC168] gi|30142048|gb|AAO17808.1| CfcD [Citrobacter rodentium] gi|282951644|emb|CBG91344.1| putative Type IV pilus biogenesis protein [Citrobacter rodentium ICC168] Length = 489 Score = 48.2 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 20/303 (6%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 + G + K LD+ + +T + + + V D M + S Sbjct: 171 LDFYGENNKTETTLDLSGNEATSSGGLTGKTETKFESSFWDDVED------MAKNYISSG 224 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 ++ + + + ++ Q + I + ++ +K++ Sbjct: 225 NYNIFKDSSVLMVNSRPSEYEALSQALDKYKADNSRQFIVTYKIFTLDKNKVKELSAGLK 284 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + + S G S + L AL + T R++ + Sbjct: 285 LNFEDGHNTVKIGSSL---LDSLTGGISAGWKNSNVDINSGLDALYKLTGDRSIQSGSFI 341 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + Y + + T ++ G TP VLS GRI + Sbjct: 342 TRNNMAIPLNMTKSQNYVSGKTRTTDDNGEVNVEVETSSVVTGTSFIITPRVLSDGRIEV 401 Query: 331 RIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL-LKDDIQQLKEGIPL 387 E + +P+ +A + + G +++A +K++ L+ I Sbjct: 402 VSGFTKRYLEGIDTYEDVQLPNVSTTEAFNSSIIMPGDLLMVAKYDVKEEKGGLEYQILG 461 Query: 388 LSK 390 + Sbjct: 462 VGD 464 >gi|124262948|ref|YP_001023418.1| pilus (IV) biogenesis [Methylibium petroleiphilum PM1] gi|124262194|gb|ABM97183.1| Pilus (IV) biogenesis [Methylibium petroleiphilum PM1] Length = 460 Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 57/476 (11%), Positives = 126/476 (26%), Gaps = 65/476 (13%) Query: 1 MRYLQRTFFTMMSIFLF-----SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN 55 MR R +++ ++ + + + + + Sbjct: 1 MRTKPRRAAFLLAPLTLALLSGCASILPGRSTDFPADKPVAGPNIPSSVAAQDLVELPV- 59 Query: 56 KVIILQVPVDVQDVLVSDPTKADVVV-----HSPRTMYLFGKNVGQANVILIGHDGKQML 110 + L + D + + + V + L G + ++ + G Sbjct: 60 QSATLDMQPAEPDDALPNTQVPPISVTGVGYIEALRLLLEGSSY---SLAVAGDVRAFEG 116 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM------VRTIQDSQRAVELS 164 + L + + + + + V V + D A L Sbjct: 117 VSAGSLRTPAGPLRDVVEQLSRGGGFFLSVRGNKVTASATKRFVIEVPNLMDQPAAANLL 176 Query: 165 E------------TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL--KVTIAEVRRDIL 210 + + + + SS + + L + L +V + +V Sbjct: 177 ASLRRLGARDAYLDAIGNTITFEASRSSWQAIDGYLAHMRRSKPMLVYEVEVYQVELTDT 236 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 G + + + + G + G S V + V+ L+ + Sbjct: 237 TNNGIGFTSLAKNLAGDPNNWSVARGG--TGIGSASFAFVGKNVTMAAVVDLLQTQGTVS 294 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------------DYGVVLHF 318 +L+ P + +SG S+ F G Y S S + G L Sbjct: 295 SLSRPRVAMLSGSSSKFRVGQTTKYVAKISQQNTGSGSASTTTTSSADTDELKTGFELQM 354 Query: 319 TPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 ++ + ++ +P R+ +T V G I+L GL Sbjct: 355 KGGYQEGSVFTNLKLTISELIRFNDFEAFGTKLRLPDTTEREIETLVRARPGDLILLGGL 414 Query: 374 LKDDIQQL-KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 + GI + N +EI +A P ++ A ++ Sbjct: 415 GSTKQNAGHEAGITGV-----------NKSTTASRSEIVVAMRPRVISFTAAKEAQ 459 >gi|330862440|emb|CBX72598.1| hypothetical protein YEW_HP33930 [Yersinia enterocolitica W22703] Length = 347 Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 24/147 (16%) Query: 139 EMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194 + V L G+V +++ + L+ S+ S+ N + I Sbjct: 191 QYRDQQVQLPGLVSVLREMSAGNHLPLAGEKESEDAPVSAPLFSADPRQNAVIIRDRQAN 250 Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 Q+ + VTI +V + Q+G S + S G SF + Sbjct: 251 MPLYSSLITQLDQRPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGVSFNSGE---- 306 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALER 265 + D + + +F L+AL+R Sbjct: 307 AAPHSDGFSTVIGNTGNFMVRLNALQR 333 >gi|148553725|ref|YP_001261307.1| TPR repeat-containing protein [Sphingomonas wittichii RW1] gi|148498915|gb|ABQ67169.1| Tetratricopeptide TPR_2 repeat protein [Sphingomonas wittichii RW1] Length = 465 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 79/280 (28%), Gaps = 39/280 (13%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + ++ + R G + + + GD SV +S Sbjct: 198 ILIEAFLIRDTRSAGLSDGINLLDSLALQFGGTLVNYSYDSAGHETRGDVSVTLPGISYS 257 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 L + A P + A G+++ F GG L ++ + D G+ Sbjct: 258 LNLAARDLS---RVSLEASPLVLARQGKTSKFLEGGSVLIVPLADDSDPVE---RDVGIT 311 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGTIVL 370 + TP + + L + E+S + + + +P +++ Sbjct: 312 VEVTPEQIGEDYVDLAVVLELSNITGQSLSDAGRGASLLQTDKTRVEAAARVPFRKAVLV 371 Query: 371 A--GLLKDDIQQLKEGI----PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G L + + P LS + + ++ Sbjct: 372 GSTGSLTRRKSGNRSLVAAPLPGLS----------TNGSSASRRDVLALI---------- 411 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 + R DD + DA A R+ P AS E + Sbjct: 412 -SVRRADDQVTPPLDADA-LAKRLFDTALPAPASYGERPS 449 >gi|312962468|ref|ZP_07776959.1| invasion protein - outer membrane [Pseudomonas fluorescens WH6] gi|311283395|gb|EFQ61985.1| invasion protein - outer membrane [Pseudomonas fluorescens WH6] Length = 453 Score = 46.7 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 56/210 (26%), Gaps = 13/210 (6%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 V + GM TI+ L + + +LL QV Sbjct: 199 QKVRVPGMASTIEAL-----LVSEHKGPLADSSLGVIAYTDTNSLLIKGKPAQV----KF 249 Query: 203 AE--VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 E V + + + S+ D K + + + L+ + Sbjct: 250 IEQLVAQLDTPKRAIEVSLWLVDVSRDDMKKLDLARKKKTSASNAHILEPLEDKQLMEQI 309 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALER R + P + A F S YG + P Sbjct: 310 TALERRRRARVVTLPVILTQENVPAVFEDNHTFYLPA--SDNDPADWKPVPYGAQVSVLP 367 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + +I + I+ E V V P+ Sbjct: 368 RIAEANQIEMLIKVEDGRQVREVGRRGKPT 397 >gi|228471921|ref|ZP_04056691.1| hypothetical protein CAPGI0001_0005 [Capnocytophaga gingivalis ATCC 33624] gi|228276773|gb|EEK15479.1| hypothetical protein CAPGI0001_0005 [Capnocytophaga gingivalis ATCC 33624] Length = 386 Score = 46.3 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 8/93 (8%), Positives = 28/93 (30%), Gaps = 4/93 (4%) Query: 52 IGLNKVIILQVPVDV---QDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGK 107 + + + V + + A + + + L K G V + D + Sbjct: 146 VKEGETTTITFSGVWNATDRVQIVNGEIAQLQGNVTDNKITLLAKKAGTTKVEIFTQDNR 205 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140 + ++ + + L++ + + + Sbjct: 206 SRGSFEVSVYTTASTLKLPHKNPLPHYRTDITN 238 Score = 45.5 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 58/175 (33%), Gaps = 18/175 (10%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV---QDVLVSDPTKADVV-VHS 83 P +N + ++ + S+ + K + + V + + A + Sbjct: 39 PTNPSNPSNPPVASSLKFTPENPSVEVEKTTTVGIVGTWNTTDKVKIDNEEVATLQGAVQ 98 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 + + GK G V ++ D K+ + ++ + + L F + + E + Sbjct: 99 DNKLTVLGKKAGTTKVHILSADNKERGSFELTVSPKL------LLSFTPEKAVVKEGETT 152 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 T+ G V D + ++ N + K+ L AG +V + Sbjct: 153 TITFSG-VWNATDRVQI-------VNGEIAQLQGNVTDNKITLLAKKAGTTKVEI 199 >gi|149928551|ref|ZP_01916778.1| Type IV B pilus protein [Limnobacter sp. MED105] gi|149822727|gb|EDM81987.1| Type IV B pilus protein [Limnobacter sp. MED105] Length = 312 Score = 46.3 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 33/270 (12%), Positives = 69/270 (25%), Gaps = 52/270 (19%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV +++ I V Q G + S V+ + + Sbjct: 51 KQVHVQLDIYSVMSKKDDQQGVSWDVFFRSLSQRYGIGVLSPDSLVAPEAGLIALTIPEA 110 Query: 254 -------------------FSFETVLHALERATAIRTLAEPTLTAISGQ---SASFTSGG 291 + ++ AL +L A++ Q A T+ G Sbjct: 111 LQGFIPGQGTPNSQTNQRFGASSAIVQALNEIGDNVQHRPISLVALNRQWARKARLTTTG 170 Query: 292 QHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340 +SS + G P +L I L++ +S+ Sbjct: 171 YLSETKPASSGALGGGTGVPGLTTDEITTGDQFAAMPFILDNNTIMLKMGISLSDLTSLL 230 Query: 341 --IGVNAGDMPSYRVRKADT-----TVELPSGGTIVLAGLLKDDIQQLKEGI----PLLS 389 + + + T+ L G + + GL +D + + PLL+ Sbjct: 231 EITTGTGETLQRVQTPNTSSISDQYTIALRPGEVMAITGLSRDVSGFTERKLTEQAPLLA 290 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 + + + ++ Sbjct: 291 G--------GSRNLSTMRENFIVLVRAVVL 312 >gi|325107283|ref|YP_004268351.1| peptidase M56 BlaR1 [Planctomyces brasiliensis DSM 5305] gi|324967551|gb|ADY58329.1| peptidase M56 BlaR1 [Planctomyces brasiliensis DSM 5305] Length = 789 Score = 46.3 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 82/285 (28%), Gaps = 55/285 (19%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 E + + + + + +V+++G + ++ E F Sbjct: 500 RGRTTGTEPEISEDLPTAQVHWDGERWSVIVNG---PPEIHRQLSETVRAFNRS------ 550 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 G QV ++ I + D+++ G S S A + Sbjct: 551 ---------------GYGQVAVETRIYMSQHDVMEAAGLSWDRIQSGRSESSLPAKNSED 595 Query: 237 KFVSEGGDFSVKGVLDRFSFE----TVLHALERATAIRTLAE------------PTLTAI 280 + + VL S + ++ L+ +R + P LT Sbjct: 596 RIDEITNSLNESNVLSNVSRQYHSPVMIAVLDNDQLLRFIKSAFIYVKPENMFAPKLTLR 655 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRI 332 +GQS G Q + + ++ + L T + + Sbjct: 656 NGQSGRLYDGVQRPFVVGVNQQEGGNLKPDVRIIEEGTSVKMRLDLTEDHTAVDLVAAVE 715 Query: 333 QTEVSEPVIGVN-------AGDMPSYRVRKADTTVELPSGGTIVL 370 +++S+ +P+ +T+ +L G T++L Sbjct: 716 MSKISDVQTFTTQARGQRVTVQVPNVDKIHVETSSQLTDGETLLL 760 >gi|167042441|gb|ABZ07167.1| putative bacterial type II/III secretion system short domain protein [uncultured marine microorganism HF4000_ANIW133B20] Length = 285 Score = 45.5 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 13/124 (10%) Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHF 318 R E LT + G+ A G + + ++ HD Sbjct: 148 SQATSRRSGEQFLTVMDGERAFIQVGQSVPFTQQWVLLTSQYANIQQTIEFHDVTTGFAV 207 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + ++ + I +S + TTV P G + + G++++ Sbjct: 208 RPRYIGD-QVEVEITPRISRINARG------FIDFEQLSTTVRAPRGEWLDIGGIMQNHD 260 Query: 379 QQLK 382 + + Sbjct: 261 EVSR 264 >gi|167619352|ref|ZP_02387983.1| probable phage-related secreted protein [Burkholderia thailandensis Bt4] Length = 63 Score = 45.5 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ T L G +VL GL++D + G L P + +++ TE+ Sbjct: 2 NTRQLQTVTRLTDGEVVVLGGLIQDRNSTARSGYAWL---P---SFLDGRSSSKQRTEVL 55 Query: 412 IAA 414 + Sbjct: 56 LVL 58 >gi|91775192|ref|YP_544948.1| NolW-like protein [Methylobacillus flagellatus KT] gi|91775336|ref|YP_545092.1| NolW-like protein [Methylobacillus flagellatus KT] gi|91709179|gb|ABE49107.1| NolW-like protein [Methylobacillus flagellatus KT] gi|91709323|gb|ABE49251.1| NolW-like protein [Methylobacillus flagellatus KT] Length = 264 Score = 45.5 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 13/124 (10%) Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHF 318 R E LT + G+ A G + + ++ HD Sbjct: 127 SQATSRRSGEQFLTVMDGERAFIQVGQSVPFTQQWVLLTSQYANIQQTIEFHDVTTGFAV 186 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + ++ + I +S + TTV P G + + G++++ Sbjct: 187 RPRYIGD-QVEVEITPRISRINARG------FIDFEQLSTTVRAPRGEWLDIGGIMQNHD 239 Query: 379 QQLK 382 + + Sbjct: 240 EVSR 243 >gi|331092338|ref|ZP_08341165.1| hypothetical protein HMPREF9477_01808 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401571|gb|EGG81154.1| hypothetical protein HMPREF9477_01808 [Lachnospiraceae bacterium 2_1_46FAA] Length = 317 Score = 45.5 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 12/130 (9%) Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A F ++ + S G + GV + + I ++ +S + + Sbjct: 46 AFFGILFINMAQGSMSGQGLLLLAVVIAGVTGGIFSLLHAFASINMKADQTISGTALNMF 105 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 A + R + ++ + +PLL IP++G LF + + Sbjct: 106 APAFAIFVARMIQGVQQ------------IQFTDTFQIDKVPLLGDIPVIGPLFFQNSYI 153 Query: 405 REETEIFIAA 414 I I Sbjct: 154 TTYLGILIFL 163 >gi|171913479|ref|ZP_02928949.1| probable penicillin resistance regulatory protein [Verrucomicrobium spinosum DSM 4136] Length = 768 Score = 45.1 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 66/231 (28%), Gaps = 70/231 (30%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV ++ I EV + L S G V+G+L Sbjct: 509 DQQVLIRSFILEVEQGWL-----PWSDYGLQEPSKD---------------GLQVQGILS 548 Query: 253 RFSFETVLHALERATAIRTLAE-PTLTAISGQSASFTSGGQHLYKTVSSS---------- 301 + + +L ++ ++++L P++ SGQ + +Y T Sbjct: 549 KEQGQKLLTHVQSDKSVQSLTAAPSVATRSGQRTHVDMVREFIYPTEFDPPQLAQPPTTK 608 Query: 302 ---------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----- 341 T T+ G+ + F P V + + E+++ + Sbjct: 609 DGKPIPGLGNLPIFPTTPTAFEMRPVGLRMEFDPVVQPGNVHRIELYWEITDFLGFMNYG 668 Query: 342 -------------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 N P + K T+ G +V+ G+ Sbjct: 669 NPIKAQVKDQNGKEKELLISENKIQQPIFETLKLTTSFSARDGEYVVIGGI 719 >gi|260587136|ref|ZP_05853049.1| ABC transporter, permease protein [Blautia hansenii DSM 20583] gi|331082915|ref|ZP_08332036.1| hypothetical protein HMPREF0992_00960 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542507|gb|EEX23076.1| ABC transporter, permease protein [Blautia hansenii DSM 20583] gi|330400056|gb|EGG79709.1| hypothetical protein HMPREF0992_00960 [Lachnospiraceae bacterium 6_1_63FAA] Length = 317 Score = 44.7 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 12/122 (9%) Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 ++ + S G + GV + + I ++ +S + + A + Sbjct: 54 NMTQANLSGQGLLLIAIVIAGVTGGIFSLLHAFASINMKADQTISGTALNMFAPAFAIFA 113 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + ++ + +P+L IP++G LF + + I I Sbjct: 114 ARTIQEVQQ------------IQFTDTFQIDKVPVLGDIPVIGPLFFQNCYITTYIGILI 161 Query: 413 AA 414 Sbjct: 162 FL 163 >gi|126664703|ref|ZP_01735687.1| hypothetical protein MELB17_02655 [Marinobacter sp. ELB17] gi|126631029|gb|EBA01643.1| hypothetical protein MELB17_02655 [Marinobacter sp. ELB17] Length = 263 Score = 44.7 bits (104), Expect = 0.035, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 74/235 (31%), Gaps = 11/235 (4%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL---KVTIAEVRRDIL 210 A S + + + + +N+ Q + + + + I+ Sbjct: 12 ASTHAFAAGQSRAYNLNQRPAADVAAQIRDLYEEVNVTVVGQKIVARGETRLLDEIGQII 71 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 +Q+ + S + G V+ + + S + A + T Sbjct: 72 QQLDVATAQLRISVQSREYLGGKRSGGGVNLTQNNASGSRNIINSNTVTISAQSKTTRSS 131 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--TTHDYGVVLHFTPTVLSPGRI 328 E +L GQSA ++G + +V + TP ++SP I Sbjct: 132 GNRERSLIVQDGQSAQVSAGQIRSLPFAARGGRNPAVLLQLVETRSGFVVTPRMISPQNI 191 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 E+S +A +P Y T ++ G + L G+ + + ++ + Sbjct: 192 ------ELSIMSFEQDAPALPGYDTEALMTIRQVQPGQWVSLGGVERSESRENSD 240 >gi|269964602|ref|ZP_06178841.1| General secretion pathway protein D [Vibrio alginolyticus 40B] gi|269830729|gb|EEZ84949.1| General secretion pathway protein D [Vibrio alginolyticus 40B] Length = 367 Score = 44.3 bits (103), Expect = 0.045, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 18/138 (13%) Query: 96 QANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 + N ILI D K L ++ + D+ R + N + E + D VL G+ + Sbjct: 232 RTNAILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKNAKAEDLVD--VLKGVSDNL 289 Query: 155 QDSQRA-----------VELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKV 200 Q ++A V ++ + S + + V++ L+I QV ++ Sbjct: 290 QAEKQAGQKTSGASRGEVVIAAHAATNSLVLTAPPDIMMALQDVISQLDIR-RAQVLIEA 348 Query: 201 TIAEVRRDILKQIGFQHS 218 I E+ +G Q Sbjct: 349 LIVEMSEGDGINLGVQWG 366 >gi|257486849|ref|ZP_05640890.1| type II and III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 57 Score = 44.0 bits (102), Expect = 0.049, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V+L SG T++L+G +++ + I P L + ++ + + TP + Sbjct: 2 KVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSILVVLITPIV 57 >gi|327540297|gb|EGF26883.1| hypothetical protein RBWH47_03922 [Rhodopirellula baltica WH47] Length = 593 Score = 43.2 bits (100), Expect = 0.088, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 14/161 (8%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 P+ + + ++ + I N V L V ++ V V D + A Sbjct: 419 IVPAALASHRGEFHRSVPATEAERSLRIEDTIQCDANDVTSLTVDGVIEAVRVEDDSIAR 478 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGH------DGKQMLNLDILIERDIAH--------LE 124 V+ + R + L G G+ V++ +++ L I ++ L Sbjct: 479 VIGSTSRHLRLIGVRPGKTRVLVQQKLAGDAESIREIYELHITSPSNVRGGESQQEQSLM 538 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + +++++ D +++ G +D++ V L Sbjct: 539 ELIEQKYRTASVQISRQGDRIIVQGECDDSRDAKEIVRLIR 579 >gi|311105342|ref|YP_003978195.1| lipoprotein 1 [Achromobacter xylosoxidans A8] gi|310760031|gb|ADP15480.1| lipoprotein 1 [Achromobacter xylosoxidans A8] Length = 528 Score = 43.2 bits (100), Expect = 0.088, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 86/295 (29%), Gaps = 39/295 (13%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 R+ + + ++ + + + N V ++T+ + Sbjct: 241 RSGVVADAVEGATSIVVTDTPEALERVARYLERENKALTRRVRLVFEEITVV---ANDAT 297 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 G ++ +++G + A G +G ++ AL A+ Sbjct: 298 SGGIDWNVVYAAAGAAARLALPGAGAGGGSLDASMARGPFQGTQ--AIVSALSTMGAVVR 355 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----------------THDYGVV 315 + + ++ + + Y ST T G Sbjct: 356 HNKVPILTLNRRPVTHAVRTTFSYIDRVQSTAVPGTTAGGANGSLPAVSISQKEETVGSF 415 Query: 316 LHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSG 365 L P + G+I L V++P+ + G + VEL G Sbjct: 416 LTLLPDIQEDGQILLSLAYDNAVAQPLKTITFGERGNQVQVQQVTIDGNGTVQQVELRPG 475 Query: 366 GTIVLAGLLKDDIQQLKEGI-PLLSKIPIL-GALFRNSRFNREETEIFIAATPFL 418 I+++G + Q ++ + P L P++ G L + E + T + Sbjct: 476 QPIIVSGFDRSQDQHDRQRLAPGL---PLIAGGL---DSASTERMTTLVLVTAQV 524 >gi|32475170|ref|NP_868164.1| hypothetical protein RB8056 [Rhodopirellula baltica SH 1] gi|32445711|emb|CAD78442.1| hypothetical protein RB8056 [Rhodopirellula baltica SH 1] Length = 593 Score = 43.2 bits (100), Expect = 0.089, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 14/161 (8%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 P+ + + ++ + I N V L V ++ V V D + A Sbjct: 419 IVPAALASHRGEFHRSVPATEAERSLRIEDTIQCDANDVTSLTVDGVIEAVRVEDDSIAR 478 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGH------DGKQMLNLDILIERDIAH--------LE 124 V+ + R + L G G+ V++ +++ L I ++ L Sbjct: 479 VIGSTSRHLRLIGVRPGKTRVLVQQKLAGDAESIREIYELHITSPSNVRGGESQQEQSLM 538 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + +++++ D +++ G +D++ V L Sbjct: 539 ELIEQKYRTASVQISRQGDRIIVQGECDDSRDAKEIVRLIR 579 >gi|87308242|ref|ZP_01090383.1| hypothetical protein DSM3645_11766 [Blastopirellula marina DSM 3645] gi|87288799|gb|EAQ80692.1| hypothetical protein DSM3645_11766 [Blastopirellula marina DSM 3645] Length = 553 Score = 43.2 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 20/132 (15%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------------STGATS 306 +L LE + LT ++G G + T S + Sbjct: 384 MLEMLEDKKQYELIDSFDLTTVTGHETKVQQGRRQPVVTGSQMIPQRGPDGRATAMQRNQ 443 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------GVNAGDMPSYRVRKADTT 359 + G +L +P +L R L++ E S+ PS +T Sbjct: 444 YNLQNVGTMLTVSPEML-GNRASLKLAFERSDVADPKEDKAEDDANDSPPSITTLIINTQ 502 Query: 360 VELPSGGTIVLA 371 + L G +L+ Sbjct: 503 LLLEDGQATILS 514 >gi|238755357|ref|ZP_04616699.1| hypothetical protein yruck0001_7720 [Yersinia ruckeri ATCC 29473] gi|238706392|gb|EEP98767.1| hypothetical protein yruck0001_7720 [Yersinia ruckeri ATCC 29473] Length = 182 Score = 42.8 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 63/233 (27%), Gaps = 59/233 (25%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV + I V ++ S V V + Sbjct: 2 DRQVAIHTQILRVE------------APSNNKKIDWSAVVKSPFTDTPADEFSGVAIVDE 49 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + + + AL + + + T + A F + Sbjct: 50 KPGAKGFISALSTQATVSVITQSTTLTTNQAVAPFQYQQESGSNNE-------------- 95 Query: 313 GVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT---TVELPSGG 366 GV + P ++ ++ L + ++ + G+ T V + SG Sbjct: 96 GVNMTVLPLLMPSSSKMQLQLSLSGYDTQIQPFSSGGNTVELTKTHLKTFTQRVNIQSGQ 155 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T+VL+G+ +++ R +T I TP ++ Sbjct: 156 TLVLSGM-------------------------SSNQGERHKT--LILITPVIL 181 >gi|163856306|ref|YP_001630604.1| putative outer membrane lipoprotein [Bordetella petrii DSM 12804] gi|163260034|emb|CAP42335.1| putative outer membrane lipoprotein [Bordetella petrii] Length = 531 Score = 42.8 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 63/242 (26%), Gaps = 31/242 (12%) Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 V + + G S+ + + + +V ++ A Sbjct: 291 ITVVANDSAEGGIDWKAVYDSARAAVAATLPVAAGGAAAALGATVDS-GPFQGTRAIVSA 349 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-------------- 308 L + A+ + + ++ + + Y ST + Sbjct: 350 LSQTGAVLRHSSVPVLTLNRRPVTHAVRTTFSYIDQVQSTAVPGIDAALGSTALPSVSIS 409 Query: 309 --THDYGVVLHFTPTVLSPGRIGL------RIQTEVSEPVIGVNAGDMP----SYRVRKA 356 G L P + GRI L + + G + + Sbjct: 410 QKQETVGTFLTLVPDAQADGRILLSIAYDNTVAQPIKSVTFGTQGNQIQVQQITIDGNGT 469 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 V L G ++L+G + + + L + P+L R + E + T Sbjct: 470 VQQVALSPGQPVILSGFDRRQDEYDRRR--LSADAPLLAG--GQDRASSERLTTVVLVTA 525 Query: 417 FL 418 + Sbjct: 526 QV 527 >gi|326336569|ref|ZP_08202738.1| hypothetical protein HMPREF9071_2204 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691234|gb|EGD33204.1| hypothetical protein HMPREF9071_2204 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 607 Score = 42.4 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 55/153 (35%), Gaps = 18/153 (11%) Query: 48 KKISIGLNKVIILQVPV---DVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIG 103 + +SI K I+ + V ++D A + + + L K VG V + Sbjct: 280 ESVSIEEGKTTIVTITGVWNTTDRVQITDGEVAALQGEVTDNKITLLAKKVGATKVEVFT 339 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNI-------------RVEMVSDTVV-LHG 149 +G+ + ++ + + ++ + R+++ ++ +V L G Sbjct: 340 KEGQSRGSFEVTVTPKLLLTFNPVKAVVKKEETTTVTIIGVWNTTDRIQIANNEIVELKG 399 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 V + + A ++ T + + + S + Sbjct: 400 GVTNNKITLLAKKVGNTKVEIFTADNRSRGSFE 432 Score = 41.7 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 25/67 (37%), Gaps = 1/67 (1%) Query: 67 QDVLVSDPTKADVVV-HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 + +++ ++ + + L K VG V + D + + ++ + L++ Sbjct: 385 DRIQIANNEIVELKGGVTNNKITLLAKKVGNTKVEIFTADNRSRGSFEVSVYTLANTLKL 444 Query: 126 TLRRFIA 132 + I Sbjct: 445 AYKADIP 451 Score = 41.3 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 39/324 (12%), Positives = 89/324 (27%), Gaps = 32/324 (9%) Query: 51 SIGLNKVIILQVPVDV---QDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDG 106 + + K + + V ++D + + L K VG V ++ DG Sbjct: 117 EVEIGKATTVTIVGTWNTTDKVQIADKEIVTQQGEVTDNKINLLAKKVGTTKVSVLTADG 176 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM--------VRTIQDSQ 158 + + +I + L I E + + + G V + + Sbjct: 177 RNRGSFEITVTPIAE-----LHFTPERPEIE-EGKTAEITIVGTWNTSDKVKVENTEIVE 230 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + E++ ++ + N + G QV V +L + Sbjct: 231 QQGEVTNNKITLLAKKVGDTKVEIFTANG-HKRGSFQVI-------VTPKLLLSFSPESV 282 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + + D V + + + + L + + + Sbjct: 283 SIEEGKTTIVTITGVWNTTDRVQITDGEVAALQGEVT-DNKITLLAKKVGATKV---EVF 338 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GQS ++ + V + + + RI + E+ E Sbjct: 339 TKEGQSRGSFEVTVTPKLLLTFNPVKAVVKKEET-TTVTIIGVWNTTDRIQIANN-EIVE 396 Query: 339 PVIGVNAGDMPSYRVRKADTTVEL 362 GV + + +T VE+ Sbjct: 397 LKGGVTNNKITLLAKKVGNTKVEI 420 Score = 40.1 bits (92), Expect = 0.81, Method: Composition-based stats. Identities = 38/364 (10%), Positives = 107/364 (29%), Gaps = 31/364 (8%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV---QDVLV 71 + + + ++ A + + + + K + + V + Sbjct: 1 MALAMSLLIISCKKSEKEVEAPPTQLKFTPERTE---VEVGKTATVTIVGTWNKTDKVQI 57 Query: 72 SDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 ++ + + L K VG V ++ DG+ N ++ + L Sbjct: 58 ANKEIITQQGEVTDNKINLLAKKVGTTKVNVLTADGRNRGNFEVTVTP-----TSELHFT 112 Query: 131 IADSNIRVEMVSDTVVLHG---MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + + + TV + G +Q + + + + ++ + N A +++ Sbjct: 113 PKKPEVEI-GKATTVTIVGTWNTTDKVQIADKEIVTQQGEVTDNKINLLAKKVGTTKVSV 171 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L G ++ + ++T+ + ++ F G + + + Sbjct: 172 LTADGRNRGSFEITV-----TPIAELHFTPERPEIEEGKTAEITIVGTWNTSDKVKVENT 226 Query: 248 KGVLDRFSF-ETVLHALERA-TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + V + + L + + + +G +S S + Sbjct: 227 EIVEQQGEVTNNKITLLAKKVGDTKV----EIFTANGHKRGSFQVIVTPKLLLSFSPESV 282 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL--P 363 S+ + + T + R+ + EV+ V + + T VE+ Sbjct: 283 SIEEGKTTI-VTITGVWNTTDRVQITDG-EVAALQGEVTDNKITLLAKKVGATKVEVFTK 340 Query: 364 SGGT 367 G + Sbjct: 341 EGQS 344 >gi|154505040|ref|ZP_02041778.1| hypothetical protein RUMGNA_02550 [Ruminococcus gnavus ATCC 29149] gi|153794519|gb|EDN76939.1| hypothetical protein RUMGNA_02550 [Ruminococcus gnavus ATCC 29149] Length = 317 Score = 42.4 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 12/106 (11%) Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 ++++ S G + G+ + + I ++ +S + + A + Sbjct: 54 NIFQGTLSGQGLFLLAMLVAGLTGGLFSLLHAFASINMKADQTISGTALNLFAPAFAIFT 113 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 R ++ T + +P+L IP++G LF Sbjct: 114 ARMIQGMQQIQFTDTFHI------------NKVPVLGDIPVIGDLF 147 >gi|3341598|emb|CAA13143.1| z43r [Vibrio cholerae] Length = 166 Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 16/44 (36%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 QV L+ I EV Q G S SS+G + + Sbjct: 123 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGS 166 >gi|213422219|ref|ZP_03355285.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 124 Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 45/161 (27%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT L G V I+ +A+++++ Sbjct: 4 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 54 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 55 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 83 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + S LD F ++ALE ++ P L Sbjct: 84 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVL 124 >gi|220934554|ref|YP_002513453.1| hypothetical protein Tgr7_1381 [Thioalkalivibrio sp. HL-EbGR7] gi|219995864|gb|ACL72466.1| hypothetical protein Tgr7_1381 [Thioalkalivibrio sp. HL-EbGR7] Length = 293 Score = 42.0 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 8/124 (6%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVT 308 + + R T R E + GQ A G ++ T V Sbjct: 140 AGEIDAQGRVVRRYTTTRRNGEQWVRVQEGQQAHIREGEVIPMASIAYLRRDGTLVGGVD 199 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 TP ++ GR+ L + + + R +T V + +G + Sbjct: 200 YQGLDRGFVVTPHLMPDGRVRLH----IVQIAERESPAGGGRIETRGLETVVTIETGEWV 255 Query: 369 VLAG 372 L G Sbjct: 256 DLGG 259 >gi|325271166|ref|ZP_08137720.1| type II and III secretion system protein [Pseudomonas sp. TJI-51] gi|324103699|gb|EGC00992.1| type II and III secretion system protein [Pseudomonas sp. TJI-51] Length = 53 Score = 42.0 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 ++ I+L GL ++ G+ L P LFR++ +EI + Sbjct: 1 QMRDREVILLGGLTEEKTSDNSTGLSFL---P---KLFRSNTSEASNSEILLVI 48 >gi|87312053|ref|ZP_01094160.1| hypothetical protein DSM3645_15135 [Blastopirellula marina DSM 3645] gi|87285222|gb|EAQ77149.1| hypothetical protein DSM3645_15135 [Blastopirellula marina DSM 3645] Length = 1719 Score = 42.0 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 13/163 (7%) Query: 248 KGVLDRFSFETVLHAL---ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302 + + +F + + ++ L P+L + S Q + Sbjct: 1385 GALANDPTFLAAAQLMGGAQPNGVVQNLY-PSLPTNKDEERLGFSTPQPNQSGSALQDLV 1443 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGL-----RIQTEVSEPVIGVNAGDMPSYRVRKAD 357 S+ + G P + G + T + EPV + + + Sbjct: 1444 PDPSIYKFETGTGFEIRPVIQPDGYSIIYDFNYMYTTNIREPVQADEK-HLGRIKRHFIN 1502 Query: 358 TTVELPSGGTIVLAGL-LKDDIQQLKEGIPLLSKIPILGALFR 399 T V+ S +++ + + +G+PLL IP++G FR Sbjct: 1503 TQVQTSSFELRLISRYQVALKAARTSQGVPLLQDIPVVGLAFR 1545 >gi|325972807|ref|YP_004248998.1| ABC transporter inner membrane protein [Spirochaeta sp. Buddy] gi|324028045|gb|ADY14804.1| ABC-type transporter, integral membrane subunit [Spirochaeta sp. Buddy] Length = 310 Score = 41.7 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 17/136 (12%) Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-----TVLSPGR 327 +E + G G T+ + V G+++ + + Sbjct: 29 SERSGVTNLGLEGLMLVGYFASAITIKMTEATLGVQALPVGILVGVAAGAIFSLLHAFAS 88 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I L+ +S I + A + Y R SG +L G+++ + IP+ Sbjct: 89 INLKADQVISGTAINMLAAALTVYLARTIS-----GSGNVRILMGIVRKN-------IPV 136 Query: 388 LSKIPILGALFRNSRF 403 LS+IPI+G LF + + Sbjct: 137 LSQIPIIGPLFFSQSY 152 >gi|228476681|ref|ZP_04061352.1| fimbrial assembly protein PilQ [Streptococcus salivarius SK126] gi|228251680|gb|EEK10775.1| fimbrial assembly protein PilQ [Streptococcus salivarius SK126] Length = 173 Score = 41.7 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 ++ ++I QV ++ I + K++G + I + + Sbjct: 131 LIRQIDIP-VQQVMIEARIVSATDNFSKELGVKWGILSNGVANN 173 >gi|6176558|gb|AAF05619.1|AF190907_1 XpsD [Xanthomonas oryzae pv. oryzae] Length = 124 Score = 41.3 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 18/109 (16%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--------- 234 V+ L++ QV ++ +AEV Q G S + + S A Sbjct: 17 VIEKLDV-MPMQVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGIGAGAGLA 75 Query: 235 --------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 G G+ + + +++HAL+ T +R L P Sbjct: 76 SAAGRNIWGDIAGKITGEKGAQWTFLGKNAASIIHALDEVTNVRLLQTP 124 >gi|115374949|ref|ZP_01462221.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1] gi|310819208|ref|YP_003951566.1| hypothetical protein STAUR_1935 [Stigmatella aurantiaca DW4/3-1] gi|115368076|gb|EAU67039.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1] gi|309392280|gb|ADO69739.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 249 Score = 41.3 bits (95), Expect = 0.39, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 10/105 (9%) Query: 69 VLVSDPTKADVVVHS-PRTMYLFGKNVGQANVILIGHDGKQMLNLDILI------ERDIA 121 V V DP+ A V S + L GK G ++L + +L + Sbjct: 53 VEVEDPSIATAEVLSGSNELLLTGKRPGSTLLLLYAEGKFAVWSLSVAEPGARPPAAPAP 112 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 L T R+ + V+ + ++L V+ + L +T Sbjct: 113 GLLATARKACPG--LEVKEAPERLLLA-TVKDAPCRTALLALFQT 154 >gi|289449367|ref|YP_003474976.1| branched-chain amino acid ABC transporter permease [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289183914|gb|ADC90339.1| branched-chain amino acid ABC transporter, permease protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 317 Score = 40.9 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 12/72 (16%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I ++ +S + + A + R+ +T ++P T + + IP Sbjct: 88 SINMKADQTISGTALNMFAPAFVIFIAREINTIQQIPFEDTFHI------------DRIP 135 Query: 387 LLSKIPILGALF 398 L+ IP+LG +F Sbjct: 136 FLADIPVLGPMF 147 >gi|160878916|ref|YP_001557884.1| inner-membrane translocator [Clostridium phytofermentans ISDg] gi|160427582|gb|ABX41145.1| inner-membrane translocator [Clostridium phytofermentans ISDg] Length = 317 Score = 40.9 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 12/93 (12%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I ++ +S + + A + R+ ++ T + +P Sbjct: 88 SIHMKADQTISGTALNMFAPAFAIFTARQIQGVQQINFDNTF------------RIQKVP 135 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +L IPILG L + + + +V Sbjct: 136 VLGDIPILGELLFQNSYITTYLGFLVLIIASIV 168 >gi|297517523|ref|ZP_06935909.1| general secretion pathway protein D precursor [Escherichia coli OP50] Length = 451 Score = 40.9 bits (94), Expect = 0.48, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 1/94 (1%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 G Q + + + G + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAA 408 >gi|124009380|ref|ZP_01694058.1| hypothetical protein M23134_03707 [Microscilla marina ATCC 23134] gi|123985042|gb|EAY24993.1| hypothetical protein M23134_03707 [Microscilla marina ATCC 23134] Length = 1246 Score = 40.9 bits (94), Expect = 0.50, Method: Composition-based stats. Identities = 34/312 (10%), Positives = 79/312 (25%), Gaps = 34/312 (10%) Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 + ++ PT A V V S T+ + + Q + + Sbjct: 334 TIDIAPPTIASVQVLSATTVEVT-----------FNENVDQTTAETLTNYSIDNGIGNPA 382 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-----QYANSSSK 182 + +N + ++ L + + +L+ ++ + + Y S Sbjct: 383 TATLDGTNKALAHLTLGSPLIDLTNYTLTIENVKDLANNAITSASQGFQYLAPYTPSQRD 442 Query: 183 KVMNLLNIAGEDQVTL-KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 V+N + QV L +V E+ + I + G+FV Sbjct: 443 IVINEIFADPSPQVGLPEVEFVELFNATNRPIDISGWKLDGVNTSGFPTFVLKSGEFVVL 502 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG---QSASFTSGGQHLYKTV 298 + + L + + ++ Q + Y Sbjct: 503 TSPGNEGLFSG--------NVLSWGGSGTLTNGGEVLTLTNASDQVVDRVNYSDEWYNDN 554 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 + S G S+ + T + + P+ + Sbjct: 555 NKSNGGYSLEQMNPTTRCTGTNNWTASSSASGGTPGAQNSVFDTTPDQKAPTINLTS--- 611 Query: 359 TVELPSGGTIVL 370 L + T+ + Sbjct: 612 ---LKNDSTLAI 620 >gi|110801614|ref|YP_698866.1| sugar ABC transporter [Clostridium perfringens SM101] gi|110682115|gb|ABG85485.1| ABC transporter, permease protein [Clostridium perfringens SM101] Length = 317 Score = 40.9 bits (94), Expect = 0.51, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 22/167 (13%) Query: 253 RFSFETVLHAL-----ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 F+ ++ AL ER+ + + + S A S Q + S Sbjct: 14 AFTIPLLITALGALFSERSGVVNIGLDGLMIVGSFSGAFTVSKLQEVMPGSSLPLWIGLG 73 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 G++ + + I L +S I + AG + + R SG Sbjct: 74 VAVLVGILFSL---LHAFASINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNI 125 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 ++ G + D +PLLS IP++G LF + + T + I Sbjct: 126 RIMQGFIPKD-------VPLLSSIPVIGDLFFSKTYAT--TWLVILI 163 >gi|254224924|ref|ZP_04918539.1| Type II secretory pathway, component PulD [Vibrio cholerae V51] gi|125622612|gb|EAZ50931.1| Type II secretory pathway, component PulD [Vibrio cholerae V51] Length = 405 Score = 40.9 bits (94), Expect = 0.51, Method: Composition-based stats. Identities = 31/253 (12%), Positives = 70/253 (27%), Gaps = 47/253 (18%) Query: 69 VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 + V D + A D V+ P L + N+ + + L + + Sbjct: 177 ISVMDRSIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L + ++ S+ +++ G ++ + A ++ Sbjct: 235 LEEDEKSTKVQALPGSNALLVRGT---QEEVKLAKRIAA--------------------- 270 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 L+++ Q+ + + ++ + + +G S G F Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDIVVPPFT----------- 318 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + F AL R++ E L A+ Q F + S Sbjct: 319 -----ETTDFLKNFQALYTNGIARSVYETNLLALENQQGQFGKKQTATLTLI--SDKEVK 371 Query: 307 VTTHDYGVVLHFT 319 + L+ T Sbjct: 372 TEKIEADNSLYVT 384 >gi|54308981|ref|YP_130001.1| hypothetical protein PBPRA1792 [Photobacterium profundum SS9] gi|46913411|emb|CAG20199.1| hypothetical protein PBPRA1792 [Photobacterium profundum SS9] Length = 124 Score = 40.9 bits (94), Expect = 0.51, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 17/35 (48%) Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP +G L R + +++ + ++ Sbjct: 1 MPLLKDIPWIGGLLRTTSDKSVSSQMSVLIKVTVI 35 >gi|313201537|ref|YP_004040195.1| nolw domain-containing protein [Methylovorus sp. MP688] gi|312440853|gb|ADQ84959.1| NolW domain protein [Methylovorus sp. MP688] Length = 269 Score = 40.9 bits (94), Expect = 0.52, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 19/231 (8%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT--LKVTIAEVRRDILKQIGFQHSI 219 ++ + + ++ + N L I + ++ + ++ + + S Sbjct: 27 RFAQELVPIVAPMVGEDGNASAIDNHLVIRASPERMQAIEELVVKL-DTARRNMRITVSH 85 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA-LERATAIRTLA-EPTL 277 SG ++ A G + +G + + E L+ L++ R+ + Sbjct: 86 EDMQSGNQQNIGAS-GNVRIGQGQVIVQRRMPGDLPPENNLNIDLDQREYSRSQQGSEFV 144 Query: 278 TAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 G+ A G + Y + + D P L Sbjct: 145 NVAEGERAFIRVGQRVPYTQQWLVLTQSYAQRIRNTQFQDITTGFAVRPRALGD------ 198 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 Q EV AG + T V + G + + G ++ + Sbjct: 199 -QVEVEITPRIAQAGAGGVIDFEELSTIVMVRPGEWLDIGGTMQSRDDVSR 248 >gi|160892053|ref|ZP_02073056.1| hypothetical protein BACUNI_04513 [Bacteroides uniformis ATCC 8492] gi|156858531|gb|EDO51962.1| hypothetical protein BACUNI_04513 [Bacteroides uniformis ATCC 8492] Length = 681 Score = 40.5 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 3/145 (2%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 D T ADV + + LF K GQ N++ G+ + ++ + + ++ Sbjct: 384 GDQTIADVRTNRDSRLSLFLKEPGQTNIVWDDQPGQSLNLIEPVPNIIVGDMQRAYTTGY 443 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 A + L G V + + L + R ++++ + Sbjct: 444 ALRKGGALNSKYCIQLKGYVA-LVCYRAVEALLNYMEASYERTGTLDATALGYWQAIRSR 502 Query: 192 GEDQVTLKVTIA--EVRRDILKQIG 214 + TIA E+ ++ G Sbjct: 503 AGISTDIDATIAATEMDKEAENDWG 527 >gi|150004697|ref|YP_001299441.1| hypothetical protein BVU_2158 [Bacteroides vulgatus ATCC 8482] gi|149933121|gb|ABR39819.1| putative outer membrane protein, probably involved in nutrient binding [Bacteroides vulgatus ATCC 8482] Length = 681 Score = 40.5 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 3/145 (2%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 D T ADV + + LF K GQ N++ G+ + ++ + + ++ Sbjct: 384 GDQTIADVRTNRDSRLSLFLKEPGQTNIVWDDQPGQSLNLIEPVPNIIVGDMQRAYTTGY 443 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 A + L G V + + L + R ++++ + Sbjct: 444 ALRKGGALNSKYCIQLKGYVA-LVCYRAVEALLNYMEASYERTGTLDATALGYWQAIRSR 502 Query: 192 GEDQVTLKVTIA--EVRRDILKQIG 214 + TIA E+ ++ G Sbjct: 503 AGISTDIDATIAATEMDKEAENDWG 527 >gi|322835199|ref|YP_004215225.1| Ig domain protein group 2 domain protein [Rahnella sp. Y9602] gi|321170400|gb|ADW76098.1| Ig domain protein group 2 domain protein [Rahnella sp. Y9602] Length = 245 Score = 40.5 bits (93), Expect = 0.65, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 8/91 (8%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV-------DVQDVLVSDPTKADV 79 P + E+N A S+ + + ++ V V +V +DPT A + Sbjct: 147 PALAESNQAAAVPVTGVTVTQSTTSVVVGQNAVITVAVLPDGATNGAFNVAAADPTVATL 206 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 V S T+ G G +I++ +DG+++ Sbjct: 207 TV-SGNTVTAKGLKAGTTQLIVMTNDGQKVA 236 >gi|293372378|ref|ZP_06618762.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f] gi|292632561|gb|EFF51155.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f] Length = 394 Score = 40.5 bits (93), Expect = 0.67, Method: Composition-based stats. Identities = 14/161 (8%), Positives = 45/161 (27%), Gaps = 15/161 (9%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK----VII 59 ++R + I L + + + ++I L++ Sbjct: 1 MKRNIIHLTGIALCAIGLFSG--------CNEDLPSYTSLTVDAETLTINLDETTEGSFN 52 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + V S+ A V S + + G G A + +I ++ + Sbjct: 53 ITGGNSGYKVSSSNAAVATA-VISGNEVIVTGLKYGTATLTVIDWTKNSANVKVVVAQEQ 111 Query: 120 IAHLEMTLRRFIADS--NIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ + + + + + + ++ ++ Sbjct: 112 ELAVKTSSTTMFFEEHKTLEIYTGNGGYSITSSNESVATAK 152 >gi|261257911|ref|ZP_05950444.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK966] Length = 374 Score = 40.5 bits (93), Expect = 0.68, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 1/57 (1%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 + V++ L+I QV ++ IAE++ +G Q + Sbjct: 319 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFT 374 >gi|204927748|ref|ZP_03218949.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323090|gb|EDZ08286.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|320085966|emb|CBY95740.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 71 Score = 40.1 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 14/39 (35%) Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + P+ R T V L G I+L GL + Sbjct: 2 TTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQSD 40 >gi|237721885|ref|ZP_04552366.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229448754|gb|EEO54545.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 394 Score = 40.1 bits (92), Expect = 0.71, Method: Composition-based stats. Identities = 14/161 (8%), Positives = 45/161 (27%), Gaps = 15/161 (9%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK----VII 59 ++R + I L + + + ++I L++ Sbjct: 1 MKRNIIHLTGIALCAIGLFSG--------CNEDLPSYTSLTVDAETLTINLDETTEGSFN 52 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + V S+ A V S + + G G A + +I ++ + Sbjct: 53 ITGGNSGYKVSSSNAAVATA-VISGNEVIVTGLKYGTATLTVIDWTKNSANVKVVVAQEQ 111 Query: 120 IAHLEMTLRRFIADS--NIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ + + + + + + ++ ++ Sbjct: 112 ELAVKTSSTTMFFEEHKTLEIYTGNGGYSITSSNESVATAK 152 >gi|6979180|gb|AAF34347.1| OmpA [Rickettsia sp. DnS28] Length = 1060 Score = 40.1 bits (92), Expect = 0.71, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 +++ G+ L + + + + TV L+ + Sbjct: 311 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 367 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212 + T +N +S + +L + + VT+ V I E++ Sbjct: 368 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGVDVKIGEIQGTGTNT 426 Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + G + G + + + G + SF + ++A Sbjct: 427 LTLPANFNLTGSINKTGGQALKLNFTNGGSVNGVVGTAANSVGDITTAGATSFASSVNAK 486 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 AT T + +G + K V++++ + T ++G L F + Sbjct: 487 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 546 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373 G L + + + DM + K+ + + SG T+ L+G+ Sbjct: 547 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 600 >gi|253999512|ref|YP_003051575.1| NolW domain-containing protein [Methylovorus sp. SIP3-4] gi|253986191|gb|ACT51048.1| NolW domain protein [Methylovorus sp. SIP3-4] Length = 286 Score = 40.1 bits (92), Expect = 0.79, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 19/231 (8%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT--LKVTIAEVRRDILKQIGFQHSI 219 ++ + + ++ + N L I + ++ +A++ + + S Sbjct: 44 RFAQELVPIVAPIVGEDGNASAIDNHLVIRASPERMQAIEELVAKL-DTARRNMRITVSH 102 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA-LERATAIRTLA-EPTL 277 SG ++ A G + +G + + E L+ L++ R+ + Sbjct: 103 EDMQSGNQQNIGAS-GNVRIGQGQVILQRRMPGDLPPENNLNIDLDQREYSRSQQGSEFV 161 Query: 278 TAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 G+ A G + Y + + D P L Sbjct: 162 NVAEGERAFIRVGQRVPYTQQWLVLTQSYAQRIRNTQFQDITTGFAVRPRALGD------ 215 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 Q EV AG + T V + G + + G ++ + Sbjct: 216 -QVEVEITPRIAQAGAGGVIDFEELSTIVMVRPGEWLDIGGTMQSRDDVSR 265 >gi|223985201|ref|ZP_03635286.1| hypothetical protein HOLDEFILI_02592 [Holdemania filiformis DSM 12042] gi|223962818|gb|EEF67245.1| hypothetical protein HOLDEFILI_02592 [Holdemania filiformis DSM 12042] Length = 1122 Score = 40.1 bits (92), Expect = 0.84, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 19/144 (13%) Query: 52 IGLNKVIILQVPVDVQDVLV---SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD--- 105 + +N+ L + +V+D ++ +DP+ D + + GK G + + + Sbjct: 982 LLVNEPTKLHLDRNVEDQIIWNIADPSILD---LDEENLEITGKKPGITKLTAMMNGISS 1038 Query: 106 --GKQMLNLDILIE--RDIAHLEMTLRRFIADSNIRV------EMVSDTVVLHGMVRTIQ 155 + ++D+ + + + + IRV E V+D V L + Sbjct: 1039 TLSVTVYSIDVNSKLSIRVEDYQSAGLEIGEERQIRVVGSIGQEEVNDRVTLTSSNPKVA 1098 Query: 156 DSQRAVELSETFLSQSGRNQYANS 179 A +L L + Sbjct: 1099 VIDEAGKLKAIGLGTTTITAAVKE 1122 >gi|168698533|ref|ZP_02730810.1| hypothetical protein GobsU_03369 [Gemmata obscuriglobus UQM 2246] Length = 635 Score = 39.7 bits (91), Expect = 0.97, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 55/197 (27%), Gaps = 40/197 (20%) Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G G V + L A + L+ P + Q+ G + Sbjct: 447 GLTTERGTSGCVLTPREAERLNDFLRAAKEKGECEVLSRPLVQVADNQTGYVQIGQNYPV 506 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYR 352 V + G L TP + S G+ +++ TEV V +P Sbjct: 507 ALAGG-----KVESKFAGTALRVTPCLASDGQ-TVKLTTEVQNGKVIPGTVMTAFVPGTT 560 Query: 353 ------------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 V++ V +P+G T V+A +P+ Sbjct: 561 FPVTTLMPATVCVQEVRANVAVPAGHTAVVA-------------------VPVAEPAAGG 601 Query: 401 SRFNREETEIFIAATPF 417 + T+ + TP Sbjct: 602 GARSGSRTQTIVVLTPT 618 >gi|296388395|ref|ZP_06877870.1| general secretion pathway protein D [Pseudomonas aeruginosa PAb1] Length = 357 Score = 39.7 bits (91), Expect = 1.00, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 69/236 (29%), Gaps = 28/236 (11%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 P L + ANA +I+ I + + + L++ V Sbjct: 126 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 181 Query: 78 DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133 D V + K A VI + ++ + L +L A+ Sbjct: 182 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 241 Query: 134 SNIRVEMVSDTVVL--------HGMVRTIQDSQRAVELSETFLSQSGRNQYANS------ 179 + + +D L GM ++ N+ Sbjct: 242 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALILLAD 301 Query: 180 -----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 + + ++ L++ QV ++ I E+ DI +G Q +I G +++ Sbjct: 302 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTRTN 356 >gi|197262271|ref|ZP_03162345.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200389824|ref|ZP_03216435.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205357882|ref|ZP_03223866.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205359009|ref|ZP_03224191.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|197240526|gb|EDY23146.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199602269|gb|EDZ00815.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205328947|gb|EDZ15711.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205339559|gb|EDZ26323.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|267993459|gb|ACY88344.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|321224172|gb|EFX49235.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 71 Score = 39.7 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 14/39 (35%) Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + P+ R T V L G I+L GL + Sbjct: 2 TTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQSD 40 >gi|198459322|ref|XP_001361339.2| GA20669 [Drosophila pseudoobscura pseudoobscura] gi|198136652|gb|EAL25917.2| GA20669 [Drosophila pseudoobscura pseudoobscura] Length = 1857 Score = 39.7 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 14/145 (9%) Query: 71 VSDPTKADVVV-----HSPRTMY--LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V +P +V + P + + GKN+G+ ++ G Q ++ + ++ + A + Sbjct: 1016 VFNPNILNVRLDMQHNLRPGQIRYSITGKNIGETKIVFQSGKGSQQVSSEPIVVQVFAPI 1075 Query: 124 EMTLRR--FIADSNIRVEMVSD---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 + R + S+I++ L V Q + + + + Sbjct: 1076 RLYPRDSTLLVGSSIQIYSQGGPQPNTNLIYTVEKEQVATMSSAIVTAHRLGASNITGKC 1135 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIA 203 V + Q T++V +A Sbjct: 1136 LMKNPVTGKDEV--VSQDTIEVRVA 1158 >gi|110799128|ref|YP_696263.1| ABC transporter, permease protein [Clostridium perfringens ATCC 13124] gi|168206804|ref|ZP_02632809.1| ABC transporter, permease protein [Clostridium perfringens E str. JGS1987] gi|168209351|ref|ZP_02634976.1| ABC transporter, permease protein [Clostridium perfringens B str. ATCC 3626] gi|168213546|ref|ZP_02639171.1| ABC transporter, permease protein [Clostridium perfringens CPE str. F4969] gi|168217678|ref|ZP_02643303.1| ABC transporter, permease protein [Clostridium perfringens NCTC 8239] gi|169342761|ref|ZP_02863797.1| ABC transporter, permease protein [Clostridium perfringens C str. JGS1495] gi|182626038|ref|ZP_02953800.1| ABC transporter, permease protein [Clostridium perfringens D str. JGS1721] gi|110673775|gb|ABG82762.1| ABC transporter, permease protein [Clostridium perfringens ATCC 13124] gi|169299018|gb|EDS81090.1| ABC transporter, permease protein [Clostridium perfringens C str. JGS1495] gi|170661774|gb|EDT14457.1| ABC transporter, permease protein [Clostridium perfringens E str. JGS1987] gi|170712523|gb|EDT24705.1| ABC transporter, permease protein [Clostridium perfringens B str. ATCC 3626] gi|170714913|gb|EDT27095.1| ABC transporter, permease protein [Clostridium perfringens CPE str. F4969] gi|177908650|gb|EDT71166.1| ABC transporter, permease protein [Clostridium perfringens D str. JGS1721] gi|182380276|gb|EDT77755.1| ABC transporter, permease protein [Clostridium perfringens NCTC 8239] Length = 317 Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 14/88 (15%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L +S I + AG + + R SG ++ G + D +P Sbjct: 90 SINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNIRIMQGFIPKD-------VP 137 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414 +LS IPI+G LF + + T + I Sbjct: 138 VLSSIPIIGDLFFSKTYAT--TWLVILI 163 >gi|160881391|ref|YP_001560359.1| inner-membrane translocator [Clostridium phytofermentans ISDg] gi|160430057|gb|ABX43620.1| inner-membrane translocator [Clostridium phytofermentans ISDg] Length = 321 Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 17/30 (56%) Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + +++ + +P+L IPI+G +F + Sbjct: 124 ITTNVKYYIQKVPVLGDIPIIGKMFFQKTY 153 >gi|269964302|ref|ZP_06178560.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269830962|gb|EEZ85163.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 204 Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 9/104 (8%), Positives = 35/104 (33%), Gaps = 1/104 (0%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +++ + G + + + T ++++ L+I + QV Sbjct: 96 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 154 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 ++ I + + ++G + T + + + + + Sbjct: 155 QIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIG 198 >gi|6979184|gb|AAF34348.1| OmpA [Rickettsia sp. DnS14] gi|87245018|gb|ABD34816.1| OmpA [Rickettsia raoultii] Length = 1060 Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 91/295 (30%), Gaps = 23/295 (7%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 +++ G+ L + + + + TV L+ + Sbjct: 311 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 367 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212 + T +N +S + +L + + VT+ V I E++ + Sbjct: 368 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGINT 426 Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + G + G + + + G + SF + ++A Sbjct: 427 LTLSANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFASSVNAK 486 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 AT T + +G + K V++++ + T ++G L F + Sbjct: 487 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 546 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373 G L + + + DM + K+ + + SG T+ L+G+ Sbjct: 547 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAVKSGGNILIKSGNTLDLSGV 600 >gi|332284675|ref|YP_004416586.1| putative outer membrane lipoprotein [Pusillimonas sp. T7-7] gi|330428628|gb|AEC19962.1| putative outer membrane lipoprotein [Pusillimonas sp. T7-7] Length = 529 Score = 39.3 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 73/233 (31%), Gaps = 29/233 (12%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 + G ++ SS+ + + G +K + S + ++ AL Sbjct: 299 DNAEAGLDWNLVFSSAKVAAAMTMAGAGMAEPGAISLGLKQGSFQGS-DAIVKALSEVGQ 357 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------------GATSVTTHDYGVVL 316 + + + ++ + + Y +T + S G +L Sbjct: 358 VVRRSSLPVLTLNRRPVTHAVRTTFSYIDKVQTTALASAVGMALPSVSVSQREETVGSLL 417 Query: 317 HFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGG 366 P G+I L V++P+ V GD + V L G Sbjct: 418 TLVPDAQEDGQILLSVAYDNTVAQPLKSVTFGDKENPLQLQQITIDGNGTVQQVALQPGQ 477 Query: 367 TIVLAGLLKDDIQQLKEGI-PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 ++++G + + + P +P++ L + R +R+ + T + Sbjct: 478 PLLISGFDRTQEETEGRRLNPG---MPLV--LGGSDRASRQSLMTVMVVTAQV 525 >gi|166368218|ref|YP_001660491.1| hypothetical protein MAE_54770 [Microcystis aeruginosa NIES-843] gi|166090591|dbj|BAG05299.1| unknown protein [Microcystis aeruginosa NIES-843] Length = 710 Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 30/245 (12%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 ++ E ++ I + + S G K S + Sbjct: 358 VEELFIEPTLARIQSIVRDYKKVSYAEVGKTSVQGLNGIKSTVTSTTVSAFDETGPLRLD 417 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 + A+ I ++ + A +G A+ L + S ++ GV + Sbjct: 418 ---ELFKTASEINNFSKELIPAPAG--ANTVPSAPVLSLIAALSKDTSAWRAITSGVSME 472 Query: 318 FTPTVLSPG-----RIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGG 366 TP+VL I + + + T V + + Sbjct: 473 ITPSVLRNSASAELDINFTTGPTKDKEPVPDQFTGTTRLRPLSRIKQNTVSTRVYVNTLD 532 Query: 367 TIVLAGLLKDDIQQL-KEGIPLLSKI--------PILGALF--RNSRFNREETEIFI--- 412 L+ + + IP++ I PI+G LF +NS + + I + Sbjct: 533 IFALSTFNSQTTEDGGRTYIPVIGTIWQGVFSGVPIIGQLFSWKNSPQSVQHQSIVLTNS 592 Query: 413 AATPF 417 P Sbjct: 593 FIVPT 597 >gi|257457694|ref|ZP_05622861.1| ABC transporter, permease protein [Treponema vincentii ATCC 35580] gi|257445080|gb|EEV20156.1| ABC transporter, permease protein [Treponema vincentii ATCC 35580] Length = 310 Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 13/88 (14%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L+ +S I + A + Y R + + +A +++ D IP Sbjct: 89 SITLKADQVISGTAINMLAAALTIYMARTITGSGNVR------VASIIRQD-------IP 135 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414 LSKIP+LG LF + + + I Sbjct: 136 GLSKIPVLGPLFFSQVYWSTWLVLVILI 163 >gi|160940454|ref|ZP_02087799.1| hypothetical protein CLOBOL_05344 [Clostridium bolteae ATCC BAA-613] gi|158437034|gb|EDP14801.1| hypothetical protein CLOBOL_05344 [Clostridium bolteae ATCC BAA-613] Length = 313 Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 13/90 (14%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L VS I + + S+ + + SG + + K IP Sbjct: 88 SIRLAQDQSVSGIAINIFMAGVTSFLYK------LMSSGQS------YQQIEPFAKLKIP 135 Query: 387 LLSKIPILGA-LFRNSRFNREETEIFIAAT 415 L IP++G LF + I T Sbjct: 136 FLGDIPLIGNALFNQDVLTYGVYVLVILVT 165 >gi|325485050|gb|ADZ16422.1| outer membrane protein A [Rickettsia raoultii] gi|325485052|gb|ADZ16423.1| outer membrane protein A [Rickettsia raoultii] gi|325485056|gb|ADZ16425.1| outer membrane protein A [Rickettsia raoultii] gi|325485060|gb|ADZ16427.1| outer membrane protein A [Rickettsia raoultii] gi|325485062|gb|ADZ16428.1| outer membrane protein A [Rickettsia raoultii] gi|325485064|gb|ADZ16429.1| outer membrane protein A [Rickettsia raoultii] gi|325485066|gb|ADZ16430.1| outer membrane protein A [Rickettsia raoultii] gi|325485068|gb|ADZ16431.1| outer membrane protein A [Rickettsia raoultii] gi|325485070|gb|ADZ16432.1| outer membrane protein A [Rickettsia raoultii] gi|325485072|gb|ADZ16433.1| outer membrane protein A [Rickettsia raoultii] gi|325485074|gb|ADZ16434.1| outer membrane protein A [Rickettsia raoultii] gi|325485076|gb|ADZ16435.1| outer membrane protein A [Rickettsia raoultii] gi|325485078|gb|ADZ16436.1| outer membrane protein A [Rickettsia raoultii] gi|325485080|gb|ADZ16437.1| outer membrane protein A [Rickettsia raoultii] gi|325485082|gb|ADZ16438.1| outer membrane protein A [Rickettsia raoultii] gi|325485084|gb|ADZ16439.1| outer membrane protein A [Rickettsia raoultii] gi|325485086|gb|ADZ16440.1| outer membrane protein A [Rickettsia raoultii] gi|325485088|gb|ADZ16441.1| outer membrane protein A [Rickettsia raoultii] gi|325485090|gb|ADZ16442.1| outer membrane protein A [Rickettsia raoultii] gi|325485092|gb|ADZ16443.1| outer membrane protein A [Rickettsia raoultii] gi|325485094|gb|ADZ16444.1| outer membrane protein A [Rickettsia raoultii] gi|325485096|gb|ADZ16445.1| outer membrane protein A [Rickettsia raoultii] gi|325485098|gb|ADZ16446.1| outer membrane protein A [Rickettsia raoultii] Length = 1052 Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 +++ G+ L + + + + TV L+ + Sbjct: 302 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 358 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212 + T +N +S + +L + + VT+ V I E++ Sbjct: 359 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGTNT 417 Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + G + G + + + G + SF + ++A Sbjct: 418 LTLPANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFVSSVNAK 477 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 AT T + +G + K V++++ + T ++G L F + Sbjct: 478 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 537 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373 G L + + + DM + K+ + + SG T+ L+G+ Sbjct: 538 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 591 >gi|315501954|ref|YP_004080841.1| hypothetical protein ML5_1150 [Micromonospora sp. L5] gi|315408573|gb|ADU06690.1| protein of unknown function DUF58 [Micromonospora sp. L5] Length = 453 Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 18/168 (10%), Positives = 47/168 (27%), Gaps = 14/168 (8%) Query: 4 LQRTFFTMMSIFLFSSNPS--VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 L R + + L ++ + + ++ +G+ +++ Sbjct: 16 LGRAVL-LTGVLLVAAVLLGRIDLVVLATPFALGTAYALRRRPAALPELELGVGDTHLVE 74 Query: 62 VPVDVQDVLVSDP-----TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 V V++P A V R + + G + + G + + Sbjct: 75 GAPLAATVAVANPDLVGYDLAVVRTRMSRWLRVEQVGFGGTGLDVSRSGGADRPFVTSVP 134 Query: 117 ERDIAHLE------MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 L+ R I + +RV +V ++ ++ Sbjct: 135 RGSAVDLKLTGTALRWGRHPIGPAGVRVAAADGLLVSRAVITDPIRAR 182 >gi|322514181|ref|ZP_08067246.1| rough colony protein A [Actinobacillus ureae ATCC 25976] gi|322119967|gb|EFX91969.1| rough colony protein A [Actinobacillus ureae ATCC 25976] Length = 68 Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 +K+T+AEV + +IG + + + A GG S G +++ + Sbjct: 1 MKLTVAEVNKTFSDKIGINWNNLSGNFFRNLGSATISGGFGKSGGQ----LALVNSNNLN 56 Query: 258 TVLHAL 263 +L AL Sbjct: 57 VLLSAL 62 >gi|6979190|gb|AAF34351.1| OmpA [Rickettsia sp. RpA4] gi|87245013|gb|ABD34814.1| OmpA [Rickettsia raoultii] Length = 1060 Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 +++ G+ L + + + + TV L+ + Sbjct: 311 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 367 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212 + T +N +S + +L + + VT+ V I E++ Sbjct: 368 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGTNT 426 Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + G + G + + + G + SF + ++A Sbjct: 427 LTLPANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFVSSVNAK 486 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 AT T + +G + K V++++ + T ++G L F + Sbjct: 487 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 546 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373 G L + + + DM + K+ + + SG T+ L+G+ Sbjct: 547 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 600 >gi|187478853|ref|YP_786877.1| type IV pilus assembly protein [Bordetella avium 197N] gi|115423439|emb|CAJ49973.1| type IV pilus assembly protein [Bordetella avium 197N] Length = 520 Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 21/187 (11%) Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + + A G + ++ L + AI L ++ + + Sbjct: 309 NSARVAAQGMLPTGLSAAIPGADKTGWDGSQALIKMLAQYGAISHQRSIPLLTLNRRPVT 368 Query: 287 FTSGGQHLYKTVSSS---------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTE 335 + Y S A + G L P G I L + Sbjct: 369 YAVHNTFSYVDQVESLRAADDKASGVAINQKRVTVGTFLTLLPDAQDDGSILLSIGYDST 428 Query: 336 VSEPVIGVN-AGDMPSYRVRKAD-------TTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 V++P+ + + +V++ + V + G +VL+G + ++ Sbjct: 429 VAQPLKALAFGSNSQPLQVQQLNLDGNGSVQQVRVRPGQPVVLSGFDRSIDSYDRQR--F 486 Query: 388 LSKIPIL 394 P+L Sbjct: 487 TPDAPLL 493 >gi|325485054|gb|ADZ16424.1| outer membrane protein A [Rickettsia raoultii] Length = 1037 Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 +++ G+ L + + + + TV L+ + Sbjct: 302 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 358 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212 + T +N +S + +L + + VT+ V I E++ Sbjct: 359 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGTNT 417 Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + G + G + + + G + SF + ++A Sbjct: 418 LTLPANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFVSSVNAK 477 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 AT T + +G + K V++++ + T ++G L F + Sbjct: 478 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 537 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373 G L + + + DM + K+ + + SG T+ L+G+ Sbjct: 538 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 591 >gi|89893914|ref|YP_517401.1| hypothetical protein DSY1168 [Desulfitobacterium hafniense Y51] gi|219668288|ref|YP_002458723.1| inner-membrane translocator [Desulfitobacterium hafniense DCB-2] gi|89333362|dbj|BAE82957.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538548|gb|ACL20287.1| inner-membrane translocator [Desulfitobacterium hafniense DCB-2] Length = 321 Score = 39.0 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 6/30 (20%), Positives = 15/30 (50%) Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + ++ +P L +P++G LF + + Sbjct: 124 ITTNVNFYLRKVPFLGDLPVIGKLFFQNTY 153 >gi|182419285|ref|ZP_02950538.1| ABC transporter, permease protein [Clostridium butyricum 5521] gi|237668765|ref|ZP_04528749.1| sugar ABC transporter, permease protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376925|gb|EDT74496.1| ABC transporter, permease protein [Clostridium butyricum 5521] gi|237657113|gb|EEP54669.1| sugar ABC transporter, permease protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 317 Score = 39.0 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 12/88 (13%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L +S I + A + + R SG + +G D +P Sbjct: 90 SINLNADQTISGTAINMIASALTIFLARTI-----AGSGRIRIQSGFYPKD-------VP 137 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414 LS+IPI+G LF + + I Sbjct: 138 FLSQIPIIGDLFFKKTYITTWLVLLILV 165 >gi|29348436|ref|NP_811939.1| hypothetical protein BT_3027 [Bacteroides thetaiotaomicron VPI-5482] gi|29340340|gb|AAO78133.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] Length = 395 Score = 39.0 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 28/281 (9%), Positives = 82/281 (29%), Gaps = 26/281 (9%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M ++R + L ++ + V N ++ I + + I+ Sbjct: 1 MNIMKRNLLYLAGFLLAAATVFSGCNDDDPSYHDLVPNTQELIINLDET---PEGIIQIV 57 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 Q + + S+ A + + + G ++ + I+ + Sbjct: 58 QGNGN-YKITSSNEDVATA-IAEGNKIKVTALKAGSTDLSITDWAKMSTNVKVIVDQLSE 115 Query: 121 AHLEMTLRRFIADSN--IRVEMVSDTV--------VLHGMVRTIQDSQRAVELSETFLSQ 170 L + N + V + V+ V + + L+ + Sbjct: 116 LVLSNSATTMYPGENKTVNVYTGNRGYKVTVDKESVVKATV-DEEGHIQIESLAPGNATV 174 Query: 171 SGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 + ++ S+ KV+ L + +++ + + + + + Sbjct: 175 TVTDRLNKSAEFSVKVIKKLVVDNSEEI--------AYLTVGEPLTIKILDGNGGYTCTN 226 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + +A + ++E G + L R+ F + ++ Sbjct: 227 NGSATYLKCTIAENGTDVIIEGLKRYRFNKTVTIKDQEGEA 267 >gi|302865409|ref|YP_003834046.1| hypothetical protein Micau_0906 [Micromonospora aurantiaca ATCC 27029] gi|302568268|gb|ADL44470.1| protein of unknown function DUF58 [Micromonospora aurantiaca ATCC 27029] Length = 453 Score = 39.0 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 47/168 (27%), Gaps = 14/168 (8%) Query: 4 LQRTFFTMMSIFLFSSNPS--VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 L R + + L ++ + + ++ +G+ +++ Sbjct: 16 LGRAVL-LTGVLLVAAVLLGRIDLVVLATPFALGTAYALRRRPAALPELELGVGDTHLVE 74 Query: 62 VPVDVQDVLVSDP-----TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 V V++P A V R + + G + + G + + Sbjct: 75 GAPLAATVAVANPDLVGYDLAVVRTRMSRWLRVEQVGFGGTGLDVSRSGGADRPFVTSVP 134 Query: 117 ERDIAHLE------MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 LE R I + +RV +V ++ ++ Sbjct: 135 RGSAVDLELTGTALRWGRHPIGPAGVRVAAADGLLVSRAVITDPIRAR 182 >gi|327541608|gb|EGF28138.1| heme/hemopexin utilization protein huxA [Rhodopirellula baltica WH47] Length = 4236 Score = 39.0 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 50/179 (27%), Gaps = 14/179 (7%) Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 S + +G + A+ F+ G S +D ++ + Sbjct: 3765 DWSDPNNWAGGAIPDLANVANVFLPAGVTPSFDHTVDGPVEIEFIN-----GDNLIVQSG 3819 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV-----VLHFTPTVLS--PGRI 328 TL+ + AS Q + V G L G I Sbjct: 3820 TLSIENN--ASLDLLNQTGGTLQFNGDLGVDVLNQQGGTLDLEGTLSVLQEFTQALGGVI 3877 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 E+++ ++ ++ V T ++ G I L GL D + +P Sbjct: 3878 EAIGNIEITQSSGTLDVQNLSGTHVELNATNGDVQVGDIIALGGLSIDANSGNIDQLPG 3936 >gi|326387091|ref|ZP_08208701.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM 19370] gi|326208272|gb|EGD59079.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM 19370] Length = 1172 Score = 39.0 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 15/86 (17%) Query: 372 GLLKDDIQQLKEGIPL-LSKIPILGALFRNSRFNREETEIF------IAATPF---LVKP 421 GL + +L +P L +IPILG F + ++ E+ + PF ++ Sbjct: 990 GLSGAETIRLIRRLPGRLGRIPILG--FTAYSNSDKQRELVEAGGGDVIVKPFTRATIRD 1047 Query: 422 VAMRDLSRP---DDHYSVEDDAKAFF 444 R ++ P D + ++ + F Sbjct: 1048 AIARAIATPSCGGDKAAGSEEFERFL 1073 >gi|238027221|ref|YP_002911452.1| putative outer membrane phospholipase A [Burkholderia glumae BGR1] gi|237876415|gb|ACR28748.1| Putative outer membrane phospholipase A [Burkholderia glumae BGR1] Length = 429 Score = 39.0 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 6/92 (6%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDV-EIGKGKKISIGL----- 54 MR+ R F + L + P+ + A+A V + E +++ L Sbjct: 1 MRHRSRRRFALPRRALAALIPAASLAGAAIPAHATVSLVQPAREAAASAPLTLTLIYADD 60 Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 ++ + D +V V+ +A V V R Sbjct: 61 DRAPLAVTTPDSLEVTVTGAEQAPVTVRLARE 92 >gi|195172636|ref|XP_002027102.1| GL20049 [Drosophila persimilis] gi|194112915|gb|EDW34958.1| GL20049 [Drosophila persimilis] Length = 1879 Score = 39.0 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 14/145 (9%) Query: 71 VSDPTKADVVV-----HSPRTMY--LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V +P +V + P + + GKN+G+ ++ G Q ++ + ++ + A + Sbjct: 1016 VFNPNILNVRLDMQHNLRPGQIRYSITGKNIGETKIVFQSGKGSQQVSSEPIVVQVFAPI 1075 Query: 124 EMTLRR--FIADSNIRVEMVSD---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 + R + S+I++ L V Q + + + + Sbjct: 1076 RLYPRDSTLLVGSSIQIYCQGGPQPNTNLIYTVEKEQVATMSSAIVTAHRLGASNITGKC 1135 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIA 203 V + Q T++V +A Sbjct: 1136 LMKNPVTGKDEV--VSQDTIEVRVA 1158 >gi|325485058|gb|ADZ16426.1| outer membrane protein A [Rickettsia raoultii] Length = 1010 Score = 39.0 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 +++ G+ L + + + + TV L+ + Sbjct: 302 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 358 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212 + T +N +S + +L + + VT+ V I E++ Sbjct: 359 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGTNT 417 Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + G + G + + + G + SF + ++A Sbjct: 418 LTLPANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFVSSVNAK 477 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 AT T + +G + K V++++ + T ++G L F + Sbjct: 478 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 537 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373 G L + + + DM + K+ + + SG T+ L+G+ Sbjct: 538 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 591 >gi|331085627|ref|ZP_08334711.1| hypothetical protein HMPREF0987_01014 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407514|gb|EGG87016.1| hypothetical protein HMPREF0987_01014 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 317 Score = 39.0 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 12/72 (16%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I ++ +S + + A + R ++ T + + +P Sbjct: 88 SINMKADQTISGTALNLFAPAFAIFTARMIQGVQQIQFTDTFHI------------DKVP 135 Query: 387 LLSKIPILGALF 398 +L IP++G +F Sbjct: 136 VLGDIPVIGDMF 147 >gi|325660645|ref|ZP_08149276.1| hypothetical protein HMPREF0490_00007 [Lachnospiraceae bacterium 4_1_37FAA] gi|325473054|gb|EGC76261.1| hypothetical protein HMPREF0490_00007 [Lachnospiraceae bacterium 4_1_37FAA] Length = 317 Score = 39.0 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 12/72 (16%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I ++ +S + + A + R ++ T + + +P Sbjct: 88 SINMKADQTISGTALNLFAPAFAIFTARMIQGVQQIQFTDTFHI------------DKVP 135 Query: 387 LLSKIPILGALF 398 +L IP++G +F Sbjct: 136 VLGDIPVIGDMF 147 >gi|301386028|ref|ZP_07234446.1| tail fiber protein H, putative [Pseudomonas syringae pv. tomato Max13] gi|302060587|ref|ZP_07252128.1| tail fiber protein H, putative [Pseudomonas syringae pv. tomato K40] gi|302129790|ref|ZP_07255780.1| tail fiber protein H, putative [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 780 Score = 39.0 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 44/346 (12%), Positives = 94/346 (27%), Gaps = 33/346 (9%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 NP VA + I+ AV+ ++ + + + L + + V + V D Sbjct: 190 LNPGVAYVEGIRLQLDAVLPVTVPAVPTKAWLDVVLQR-ELSDVVASFKVVFGQDAKIDY 248 Query: 79 VVVHSPRTMYL-FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 S R + G +++ D + + +DI + + A Sbjct: 249 TDSASARHYLVPLADITGTSSLT----DLRPIEAIDIELVKHFAA--------------- 289 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V D L T +D L N ++ +++N + + QV Sbjct: 290 --RVGDYPDLRARATTKEDVD-LGNLPNAISDDPNSNSGVVLATTRMVNAVR-SAISQVM 345 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 I + + + + +G + G + + GV Sbjct: 346 --ALIVDGSTPVGRAVRLVTPRAIRFNGAASGIGTYDGASDTNITLTLADSGVAAGTYTR 403 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV-- 315 ++ + + PT A G + +++ + + G Sbjct: 404 VAVNL---KGLVTSGGNPTTLAGYGITDAYSKDDANSSFVKQGGGPGMLSNRINIGWTGD 460 Query: 316 -LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 L + GRI ++ + T V Sbjct: 461 RLKVSVDGTDGGRIWTDTSFNPNDKANKATSLAGYGITDAHTITQV 506 >gi|294643589|ref|ZP_06721393.1| putative lipoprotein [Bacteroides ovatus SD CC 2a] gi|294808688|ref|ZP_06767422.1| putative lipoprotein [Bacteroides xylanisolvens SD CC 1b] gi|292641084|gb|EFF59298.1| putative lipoprotein [Bacteroides ovatus SD CC 2a] gi|294444127|gb|EFG12860.1| putative lipoprotein [Bacteroides xylanisolvens SD CC 1b] Length = 523 Score = 38.6 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 30/267 (11%), Positives = 77/267 (28%), Gaps = 30/267 (11%) Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFI 131 + + L GK G V + +++ L + ++ +A+L + Sbjct: 234 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 293 Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 I E + L+G + + + FL + ++ + Sbjct: 294 PFEYNGTADESLKILSTITFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 353 Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226 + ++ + L +I E ++ + + + ++ + G Sbjct: 354 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 411 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S K ++ DF + + + + L++ ++ SG+ S Sbjct: 412 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 469 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313 G ++ G T G Sbjct: 470 EDKDGMVANWLFNNGNGNTKTFVSLAG 496 >gi|196231382|ref|ZP_03130241.1| hypothetical protein CfE428DRAFT_3406 [Chthoniobacter flavus Ellin428] gi|196224718|gb|EDY19229.1| hypothetical protein CfE428DRAFT_3406 [Chthoniobacter flavus Ellin428] Length = 267 Score = 38.6 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 52/189 (27%), Gaps = 17/189 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V +++ + V I + + G + + Sbjct: 59 VRIEMQVVAVPERIGIALMPDLKSKEKIEAANTRIQQMLAKGTAKLIGWPIMTTHTGQR- 117 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 V+ A++ PTL A + + T+ T + GV Sbjct: 118 --AVIEAIKEIRWATEYHPPTLNVSE-VPADPPAKVTPSVDVSTLEAFPTAFETRNAGVT 174 Query: 316 LHFTPTVLSPGR----------IGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVEL 362 L P + G+ + L +V+ G + P + K T+ L Sbjct: 175 LEVEPVIAPDGKTIDLNIVPQHVRLTGFKKVTIEGAAHKGKTIVEQPEFNTNKVTTSRRL 234 Query: 363 PSGGTIVLA 371 +G +++ Sbjct: 235 KNGERVLMG 243 >gi|295088172|emb|CBK69695.1| hypothetical protein [Bacteroides xylanisolvens XB1A] Length = 523 Score = 38.6 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 29/267 (10%), Positives = 76/267 (28%), Gaps = 30/267 (11%) Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131 + + L GK G V + +++ + ++ +A+L + Sbjct: 234 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 293 Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 I E + L+G + + + FL + ++ + Sbjct: 294 PFEYNGTADESLKILSTITFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 353 Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226 + ++ + L +I E ++ + + + ++ + G Sbjct: 354 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 411 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S K ++ DF + + + + L++ ++ SG+ S Sbjct: 412 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 469 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313 G ++ G T G Sbjct: 470 EDKDGMVANWLFNNGNGNTKTFVSLAG 496 >gi|298385858|ref|ZP_06995415.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] gi|298261086|gb|EFI03953.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] Length = 395 Score = 38.2 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 28/281 (9%), Positives = 83/281 (29%), Gaps = 26/281 (9%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M ++R + L ++ + V N ++ I + + I+ Sbjct: 1 MNIMKRNLLYLAGFLLAAATVFSGCNDDDPSYHDLVPNTQELIINLDET---PEGIIQIV 57 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 Q + + + S+ A + + + G ++ + I+ + Sbjct: 58 QGNGNYK-ITSSNEDVATA-IAEGNKIKVTALKAGSTDLSITDWAKMSTNVKVIVDQLSE 115 Query: 121 AHLEMTLRRFIADSN--IRVEMVSDTV--------VLHGMVRTIQDSQRAVELSETFLSQ 170 L + N + V + V+ V + + L+ + Sbjct: 116 LVLSNSATTMYPGENKTVNVYTGNRGYKVTVDKESVVKATV-DEEGHIQIESLAPGNATV 174 Query: 171 SGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 + ++ S+ KV+ L + +++ + + + + + Sbjct: 175 TVTDRLNKSAEFSVKVIKKLVVDNSEEI--------AYLTVGEPLTIKILDGNGGYTCTN 226 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + +A + ++E G + L R+ F + ++ Sbjct: 227 NGSATYLKCTIAENGTDVIIEGLKRYRFNKTVTIKDQEGES 267 >gi|237715223|ref|ZP_04545704.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405067|ref|ZP_06081617.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229444532|gb|EEO50323.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355942|gb|EEZ05032.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 516 Score = 38.2 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 39/129 (30%), Gaps = 14/129 (10%) Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131 + + L GK G V + +++ + ++ +A+L + Sbjct: 227 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 286 Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 I E + L+G + + + FL + ++ + Sbjct: 287 PFEYNGTADESLKILSTITFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 346 Query: 179 SSSKKVMNL 187 + ++ + L Sbjct: 347 NDEERFLQL 355 >gi|330836048|ref|YP_004410689.1| nucleoside ABC transporter membrane protein [Spirochaeta coccoides DSM 17374] gi|329747951|gb|AEC01307.1| nucleoside ABC transporter membrane protein [Spirochaeta coccoides DSM 17374] Length = 310 Score = 38.2 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I LR +S I + A + Y R V SG ++ G+++ D +P Sbjct: 88 SINLRADQTISGTAINMLAAALTVYLAR-----VFSGSGNIRIMMGIVRSD-------VP 135 Query: 387 LLSKIPILGALFRNSRF 403 +LSKIP+LG LF + + Sbjct: 136 VLSKIPVLGPLFFSQTY 152 >gi|262199490|ref|YP_003270699.1| von Willebrand factor type A [Haliangium ochraceum DSM 14365] gi|262082837|gb|ACY18806.1| von Willebrand factor type A [Haliangium ochraceum DSM 14365] Length = 808 Score = 38.2 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 51/130 (39%), Gaps = 11/130 (8%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKIS-IGLN----KVIILQVPVDVQDVLVSDPTK 76 + A P A++ + +D I + +G+ + +++ + +V +DP+ Sbjct: 30 APALEPDPAAADSPIALATDHLITVSGNVETLGVGYHTEEGLLVNTNDALFEVEAADPSI 89 Query: 77 ADVVV-----HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH-LEMTLRRF 130 + SP + + G + G + + D + +++ +L + ++ LE T Sbjct: 90 VEAETERTHESSPPALIVRGLSPGTTELTVRLFDATRTMHVTVLPQTILSGKLETTTVEL 149 Query: 131 IADSNIRVEM 140 +D + Sbjct: 150 DSDETAEIGT 159 >gi|293604519|ref|ZP_06686924.1| lipoprotein [Achromobacter piechaudii ATCC 43553] gi|292817100|gb|EFF76176.1| lipoprotein [Achromobacter piechaudii ATCC 43553] Length = 542 Score = 38.2 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 84/260 (32%), Gaps = 36/260 (13%) Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 N V ++T+ V++ G + +++G S +AA + + Sbjct: 288 NKAMTRRVRLVFEEITVI-VKQSAAG--GLDWNALYAAAGSSARYAAPAAAALGASTLEA 344 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 ++ G + V+ AL AI + + ++ + + Y ST Sbjct: 345 TL-GRGALQGSQAVISALSTMGAIVRHNKVPVLTLNRRPVTHAIRTTFSYIDRVQSTAVP 403 Query: 306 SVT----------------THDYGVVLHFTPTVLSPGRIGLRIQTE--VSEPVIGVNAG- 346 +T G L P + G+I L + + V++P+ + G Sbjct: 404 GMTAAGANGSLPAVSITQKEETVGSFLTLVPDIQPDGQILLSVAYDNAVAQPLKTIMFGE 463 Query: 347 -------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI-PLLSKIPILGALF 398 + +EL G ++L+G + Q + + P +P++ + Sbjct: 464 RGNQVQVQQITIDGNGTVQQIELRPGQPVILSGFDRSTDQHSGQRLAPG---MPLI--MG 518 Query: 399 RNSRFNREETEIFIAATPFL 418 +E + T + Sbjct: 519 GQDSAEQERETTLMLVTAQV 538 >gi|32472568|ref|NP_865562.1| heme/hemopexin utilization protein huxA [Rhodopirellula baltica SH 1] gi|32443804|emb|CAD73246.1| conserved hypothetical protein-possibly heme/hemopexin utilization protein huxA [Rhodopirellula baltica SH 1] Length = 4254 Score = 38.2 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 6/175 (3%) Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH---ALERATAIRTL 272 S + +G + A+ F+ G S +D ++ + ++ +R Sbjct: 3785 DWSDPNNWAGGAIPDLANVANVFLPAGVTPSFNNTVDGPVEIESINGDNLIVQSGTLRIE 3844 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + +L + Q+ L V + T V+ FT G I Sbjct: 3845 NDASLD-LLNQTGGTLQFDGGLGVAVLNQQSGTLDLAGTLSVLQEFT--QALGGVIEAIG 3901 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 E+++ ++ ++ V T ++ G I L GL D + +P Sbjct: 3902 NIEITQSSGTLDVRNLSGTHVELNATNGDVQVGDIIALGGLNIDANSGNIDQLPG 3956 >gi|332297783|ref|YP_004439705.1| protein of unknown function DUF342 [Treponema brennaborense DSM 12168] gi|332180886|gb|AEE16574.1| protein of unknown function DUF342 [Treponema brennaborense DSM 12168] Length = 657 Score = 38.2 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 48/345 (13%), Positives = 97/345 (28%), Gaps = 26/345 (7%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80 P K+ P + I +E G+ I++ L K +I+ ++ Sbjct: 297 PLAQKMLPERGKAGKTIFGRYLEAKNGRDINLPLGKNVIVDTDGR------------TIL 344 Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140 + L G + + L + +I L + + D V+ Sbjct: 345 AAMNGQVLLIGDKI--------NVEPIMELENVSIKTGNITFLGTVIVKGNVDDGFNVKA 396 Query: 141 VSDTVVLHGMV--RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + + ++G V +++ + G + S K + ++ E+ V + Sbjct: 397 SGN-IEIYGTVGKSSLEAGGDIIVSLGIMGRDEGTIRAGKSLWAKFIQNTTVSVEEYVIV 455 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 I K+I Q + G + K + G S + F E Sbjct: 456 ADGIINSNVTARKRIMLQ-GKRAAIIGGHLFATEEISAKSIGSNGGGSETILEVGFDPEA 514 Query: 259 VLHALERATAIRTLAEPTLTAISGQSA--SFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 + LE +LA+ + + + L S G S + Sbjct: 515 KMRLLELTEKRNSLAKESEEVNLNIQTLENMKKVRRSLPPEKEESLGKFSSRRAEIAAET 574 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 T + + LR + + + VR V Sbjct: 575 EKLDTEIQDIQNHLRELKVIGKVSVSGTVYAGVKIFVRDVKDDVR 619 >gi|159039589|ref|YP_001538842.1| transport-associated [Salinispora arenicola CNS-205] gi|157918424|gb|ABV99851.1| transport-associated [Salinispora arenicola CNS-205] Length = 213 Score = 38.2 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 28/151 (18%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD--VLVSDPTK----------- 76 A+ + E ++I I +++ + V + V V++ Sbjct: 58 AVADELEVRPPGDERYTDREIGIAVSRALEWDSFVPAERLDVTVANGWVILRGDVEFGWQ 117 Query: 77 ---ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 A+ V R + G N++ G ER ++ L R + Sbjct: 118 RRTAEAEVRRLRGVR------GVTNLVAARPAGAA------DGERIRREVQRALSRGLGT 165 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 + V++ TVVL+G+VR+ + +A + Sbjct: 166 ERVTVDVDGSTVVLNGVVRSWWERDQAERTA 196 >gi|220928834|ref|YP_002505743.1| inner-membrane translocator [Clostridium cellulolyticum H10] gi|219999162|gb|ACL75763.1| inner-membrane translocator [Clostridium cellulolyticum H10] Length = 313 Score = 38.2 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 15/78 (19%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE--G 384 I LR VS + + S+ G + + L D ++ Sbjct: 84 TITLRANQIVSGLSLTIFGAGFSSFL------------GQKL-IGQALSDSVRNSFTPVK 130 Query: 385 IPLLSKIPILGALFRNSR 402 IPLL IPILG+ F + Sbjct: 131 IPLLGDIPILGSAFFHQN 148 >gi|164687316|ref|ZP_02211344.1| hypothetical protein CLOBAR_00957 [Clostridium bartlettii DSM 16795] gi|164603740|gb|EDQ97205.1| hypothetical protein CLOBAR_00957 [Clostridium bartlettii DSM 16795] Length = 323 Score = 38.2 bits (87), Expect = 3.3, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 87/256 (33%), Gaps = 25/256 (9%) Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 ++ + + V+V D AD++ KN+G V+ + +GK L + Sbjct: 56 ELKKNPKRVVVFDYGVADIL-----------KNLGVDAVVGLPKNGKMPEILSNYSDDKY 104 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHG--MVRTIQDSQRAVELSETFLSQSGRNQYAN 178 ++ VE ++ +++ G I + + Sbjct: 105 TNVGSLKETDFEA----VESLNPDLIIIGGRQAEDIDSFKEIAPTVNLAVDGQDYMNSFK 160 Query: 179 SSSKKVMNLLNIAGEDQV---TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 + + NL + E + ++ IA+V + + ++ G S+ ++ G F+A Sbjct: 161 TVVTDLGNLFDKQDEAKKAIDEIEAKIAKVNKTVTEK-GLTASVVMANEGSISVFSAKSR 219 Query: 236 GKFVSEGGDFS-VKGVLDRFSFETVLH---ALERATAIRTLAEPTLTAISGQSASFTSGG 291 + G F+ +D + + LE + + + G++AS Sbjct: 220 YGLIYNGLGFTEADKNIDDSTHGQQVSFEYFLENKSDYVFVVDRGAVTGKGEAASKLFDN 279 Query: 292 QHLYKTVSSSTGATSV 307 + + KT S G Sbjct: 280 EVMNKTEVSKNGNIVY 295 >gi|160885633|ref|ZP_02066636.1| hypothetical protein BACOVA_03636 [Bacteroides ovatus ATCC 8483] gi|156109255|gb|EDO11000.1| hypothetical protein BACOVA_03636 [Bacteroides ovatus ATCC 8483] Length = 514 Score = 37.8 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 39/129 (30%), Gaps = 14/129 (10%) Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131 D + L GK G V + +++ + ++ +A+L + Sbjct: 225 DEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 284 Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 I E + L+G + + + FL + ++ + Sbjct: 285 PFEYNGTADESLKNLSTITFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 344 Query: 179 SSSKKVMNL 187 + ++ + L Sbjct: 345 NDEERFLQL 353 >gi|328887424|emb|CCA60663.1| hypothetical protein SVEN_7377 [Streptomyces venezuelae ATCC 10712] Length = 3543 Score = 37.8 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 58/378 (15%), Positives = 101/378 (26%), Gaps = 51/378 (13%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 RT + + + P P A A + +G+ + L + Sbjct: 2326 RTEVDRLGRAVAVTLPDY-TPPGAATAITATSRTAYDGLGRTVSRTDPLGRTTSYAYDQL 2384 Query: 66 VQDVLVSDPTKADVV----VHSPRTMYLFGKNV----GQANVILIGHDGKQMLNLDILIE 117 V V+DP D V + SP Y G + G + G Q+ + D Sbjct: 2385 GNLVSVTDPAVDDTVGTAALQSPGAGYFDGGSQALGGGAVSTFTWTPTGLQLSSTDQTGS 2444 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 R A + R+ TI+ +A L+ F NQ Sbjct: 2445 RSEATYDELGRQL-------------------TATTIERRPQAQTLTSRFTWDDAGNQTR 2485 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAE----VRRDILKQIGFQHSIT---GSSSGPSKSF 230 +++ DQV + + V +G G + + Sbjct: 2486 STTPSGRTTRTEYNAADQVL---KVIDPAGGVTTSAYDGLGRLIETKDPTGRRATTAYDA 2542 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT---------LAEPTLTAIS 281 + G ++ + + L A A RT L + L + Sbjct: 2543 SGLPVSTTDYGTGSTPLRTATSEYDADGNLTAAVDANGARTTYGYDALGQLTKQVLPVSA 2602 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV----VLHFTPTVLSPGRIGLRIQTEVS 337 +S + T G + G T + + V P +R T V Sbjct: 2603 TKSITTTFGYDAAGNRTRLTDGRGKATYYTFNVWGLPESTIEPATSQHWTADVRTWTTVY 2662 Query: 338 EPVIGVNAGDMPSYRVRK 355 + +P R+ Sbjct: 2663 DAAGRPVTELLPGNVKRQ 2680 >gi|302387358|ref|YP_003823180.1| Cna B domain protein [Clostridium saccharolyticum WM1] gi|302197986|gb|ADL05557.1| Cna B domain protein [Clostridium saccharolyticum WM1] Length = 1610 Score = 37.8 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 13/160 (8%) Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT--AIRTLA 273 + G G +S G ++ G+ S+ + T + Sbjct: 1300 NFYSFTGTGGIPNGTIQSGGTVSLSGGQSVTITGLPKDTSYSVTENDYSANGYSTASTGS 1359 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + Q+ASF + S T A + TT + + FT + Sbjct: 1360 SGIVRTDEEQTASFVNTKTMPGSLTISKTVAGTSTTKKFDFKVIFT---KPDKTVD---- 1412 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + P G+ P+ +R DT + L G I + GL Sbjct: 1413 ---TAPYKFTGRGEFPTDEIRSGDT-ISLADGENITITGL 1448 >gi|308813113|ref|XP_003083863.1| unnamed protein product [Ostreococcus tauri] gi|116055745|emb|CAL57830.1| unnamed protein product [Ostreococcus tauri] Length = 1184 Score = 37.8 bits (86), Expect = 4.5, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 5/78 (6%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD-----VLV 71 + S P A A + G +S V ++ + V Sbjct: 30 VCAAKSTTASTPPTPAGDARPRVVVSGDRAGPTMSSPTAPVPRVETASTIGTCDVSNVAC 89 Query: 72 SDPTKADVVVHSPRTMYL 89 + AD V S +Y+ Sbjct: 90 VNTDVADAEVLSAFAVYV 107 >gi|308067708|ref|YP_003869313.1| hypothetical protein PPE_00926 [Paenibacillus polymyxa E681] gi|305856987|gb|ADM68775.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 1350 Score = 37.4 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 14/124 (11%) Query: 35 AVINISDVEIGKGKKISIGLNKV-IILQVPVDVQD---------VLVSDPTKADVVVHSP 84 + N S V + + L K + + D + SDP AD V + Sbjct: 819 PIPNSSPVVTRAPDAVHLILGKADGTVDLSTIFADPDHDPIRYEISSSDPAVADATVQND 878 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 + + G G + + D + +I + + LE + I + ++ + Sbjct: 879 -QLVIHGLTSGNTVITITAKDDR---GGEISTDLQVHLLENAVITAIPEQLLQWGDAASE 934 Query: 145 VVLH 148 + L Sbjct: 935 LDLS 938 >gi|254520856|ref|ZP_05132912.1| ABC transporter [Clostridium sp. 7_2_43FAA] gi|226914605|gb|EEH99806.1| ABC transporter [Clostridium sp. 7_2_43FAA] Length = 315 Score = 37.4 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 14/88 (15%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L +S I + AG + + R SG V G + D IP Sbjct: 88 SINLNANQVISGTAINMIAGALTVFLARNIT-----GSGNIRVTNGFIPKD-------IP 135 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414 +LS+IPI+G LF + T + I Sbjct: 136 VLSQIPIIGPLFFTKTYAT--TWLVIVI 161 >gi|326790705|ref|YP_004308526.1| ABC transporter transmembrane protein [Clostridium lentocellum DSM 5427] gi|326541469|gb|ADZ83328.1| ABC-type transporter, integral membrane subunit [Clostridium lentocellum DSM 5427] Length = 317 Score = 37.4 bits (85), Expect = 4.9, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 12/87 (13%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L+ +S I + A + + R SG ++ GL K + + Sbjct: 90 SINLQADQTISGTAINMIAAGLTIFLARNIT-----GSGNIVLTVGLAKQN-------VK 137 Query: 387 LLSKIPILGALFRNSRFNREETEIFIA 413 +LS IPILG LF + ++ + I Sbjct: 138 VLSSIPILGPLFFTNSYSTTWLVLLIL 164 >gi|222081092|ref|YP_002540455.1| hypothetical protein Arad_7335 [Agrobacterium radiobacter K84] gi|221725771|gb|ACM28860.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 97 Score = 37.4 bits (85), Expect = 4.9, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + S I V T+VL G+ + Q + A+ ++ + N A + Sbjct: 33 LEGSRIDVTATEGTIVLSGVATSDQARETAIAIAGEYAGNRVVNNIATQAD 83 >gi|156057445|ref|XP_001594646.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980] gi|154702239|gb|EDO01978.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980 UF-70] Length = 612 Score = 37.4 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 42/178 (23%), Gaps = 9/178 (5%) Query: 185 MNLLNIAGEDQVTLKVTIAEV--RRDILKQIGFQHSITGSSSGPSKSFAADFGGKF---V 239 +N L QV A + +L+ + A + Sbjct: 34 INGLVHRQPAQVWKHSKYARMFSSSTLLRDQSQTAPSAEAYLNSGVVKGAANPVNVKKVL 93 Query: 240 SEGGDFSVKGVLDRFSFET--VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G G F + L AL+ A L P + I Q+A + + Sbjct: 94 VIGSGGLSIGQAGEFDYSGSQALKALKEAGVASVLINPNIATI--QTAHVLTDEVYYLPV 151 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 G+ L F + + + V + + + Sbjct: 152 TPEYVTYVIERERPDGIFLTFGGQTALNLGVQMERMGIFERYGVKVLGTSIKTLETSE 209 >gi|209965643|ref|YP_002298558.1| phospholipid-binding domain protein, putative [Rhodospirillum centenum SW] gi|209959109|gb|ACI99745.1| phospholipid-binding domain protein, putative [Rhodospirillum centenum SW] Length = 349 Score = 37.4 bits (85), Expect = 5.6, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 13/91 (14%) Query: 105 DGKQMLNLDILIERDIAHLEMTLRR--FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G+ N R + + L + S+I V + V L G V + QD +RA + Sbjct: 203 RGRGPRNYTRSDSRIVEDVNDRLTDDFRLDASDIDVSAENGEVTLSGHVNSRQDKRRAED 262 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 L+E+ V N L + Sbjct: 263 LAESVSGVR-----------HVQNNLRVRDR 282 >gi|146279408|ref|YP_001169566.1| hypothetical protein Rsph17025_3381 [Rhodobacter sphaeroides ATCC 17025] gi|145557649|gb|ABP72261.1| hypothetical protein Rsph17025_3381 [Rhodobacter sphaeroides ATCC 17025] Length = 343 Score = 37.4 bits (85), Expect = 5.8, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 55/207 (26%), Gaps = 3/207 (1%) Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 I ++ VL M+ D A L++ + + S V + A E Sbjct: 75 ICIDARHANGVLK-MMPNKTDRHDARGLAQIVRTGWFKAAQIKSHDAYVNRAMLTAREAL 133 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V ++V + R +LK G V + + R Sbjct: 134 VGMRVRLENEIRGLLKTFGIMFGKRVGGFKRRAEEIIRDELTVVPDLVPIFEALMQARRD 193 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + AL + IR +A T +A + + + + G Sbjct: 194 ILARIAAL--DSRIRAVARRHATVRLLMTAPGVGPITAMAVVAAFDDASRFRRSSSAGAY 251 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIG 342 L TP G I + Sbjct: 252 LGLTPRRYESGEISRNGRVSKRGDAFT 278 >gi|187926467|ref|YP_001892812.1| transport-associated [Ralstonia pickettii 12J] gi|241665954|ref|YP_002984313.1| transport-associated [Ralstonia pickettii 12D] gi|187728221|gb|ACD29385.1| transport-associated [Ralstonia pickettii 12J] gi|240867981|gb|ACS65641.1| transport-associated [Ralstonia pickettii 12D] Length = 138 Score = 37.0 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 14/100 (14%) Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRR--FIADSNIRVEMVSD-TVVLHGMVRTIQDS 157 G + ++ L + ++ IR+ D V+L G V T + + Sbjct: 28 AWGDSPNTAGARMLDDSLLTYQVKAALDQDTALSTRQIRIRSSPDGKVILTGWVDTPEMA 87 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 +RA + + F+ + K+ N L + QV Sbjct: 88 RRAGDDVKRFVDSA-----------KLDNQLRVLSRMQVL 116 >gi|326383816|ref|ZP_08205501.1| MFS transporter [Gordonia neofelifaecis NRRL B-59395] gi|326197580|gb|EGD54769.1| MFS transporter [Gordonia neofelifaecis NRRL B-59395] Length = 757 Score = 37.0 bits (84), Expect = 6.3, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 55/197 (27%), Gaps = 9/197 (4%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ------VPVDV 66 S L P + + A V G + L +L+ V Sbjct: 544 SYALAGLEPGMYTVIATAADRAPRAVSVAVVDGAVLRRDFSLEGGAVLRGVVGDGVRNLP 603 Query: 67 QDVLVSD---PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V+V+D A + L G + G+ + G Q + + ++ + Sbjct: 604 ASVVVTDQQGEVVAQTKAGADGVFVLTGLSDGETVAVTATAPGYQPSSRLVTVDGRMTGP 663 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + V + ++ V I Q V T R + + + Sbjct: 664 VEFGLTAHGNVQGYVRAIGGGLLAGATVSAIGPDQTIVAAVRTDSDGWYRIEGLDDARYT 723 Query: 184 VMNLLNIAGEDQVTLKV 200 ++ + QV++ Sbjct: 724 LVASMYEPQARQVSVAA 740 >gi|308049903|ref|YP_003913469.1| hypothetical protein Fbal_2192 [Ferrimonas balearica DSM 9799] gi|307632093|gb|ADN76395.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799] Length = 994 Score = 37.0 bits (84), Expect = 6.3, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 24/154 (15%) Query: 70 LVSDPTKA-------DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 V P+ A DVV P T + N G NV + + + ++ + Sbjct: 589 AVGTPSFAISHGSDQDVVAVDPHTGIVTVLNAGTTNVTVTDPGDAKTGSYRQMVTVTVNK 648 Query: 123 LEMTLRRFIADSNIRVEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 +A I+ + L G+ S + ++ ++ Sbjct: 649 GATNPNLKLASERIQGVYGQLPLEAPRLSGVEPDAWVSYWIEDAAQRQIA---------- 698 Query: 180 SSKKVMNLLNIAGEDQV-TLKVTIAEVRRDILKQ 212 ++ + + Q ++VT+ E R+ Sbjct: 699 ---QIDSRTGVVTPQQAGIVEVTVTEHSRNYEDS 729 >gi|108763400|ref|YP_629627.1| hypothetical protein MXAN_1370 [Myxococcus xanthus DK 1622] gi|108467280|gb|ABF92465.1| hypothetical protein MXAN_1370 [Myxococcus xanthus DK 1622] Length = 192 Score = 37.0 bits (84), Expect = 6.7, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 24/54 (44%) Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 + + V V + + P + + G ++G + V++ +Q L++ + + Sbjct: 138 ENAERVRVQSSAVVEASLGEPNQIMVQGLSLGVSEVLVWRQGSRQPLSVRVEVA 191 >gi|289679099|ref|ZP_06499989.1| general secretion pathway protein D [Pseudomonas syringae pv. syringae FF5] Length = 60 Score = 37.0 bits (84), Expect = 6.9, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 14/45 (31%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 QV ++ I EV+ +G Q + + + Sbjct: 14 PLQVQIETRILEVQLTGELDMGVQWYLGRLAGNSGTTGNVTNTAG 58 >gi|18310559|ref|NP_562493.1| ABC transporter [Clostridium perfringens str. 13] gi|18145240|dbj|BAB81283.1| probable ABC transporter [Clostridium perfringens str. 13] Length = 317 Score = 37.0 bits (84), Expect = 7.0, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 14/88 (15%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L +S I + AG + + R SG ++ G + D +P Sbjct: 90 SINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNIRIMQGFIPKD-------VP 137 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414 +L IPI+G LF + + T + I Sbjct: 138 VLCSIPIIGDLFFSKTYAT--TWLVILI 163 >gi|313498035|gb|ADR59401.1| NolW domain protein [Pseudomonas putida BIRD-1] Length = 246 Score = 37.0 bits (84), Expect = 7.0, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 17/132 (12%) Query: 261 HALERATAIRTLA---------EPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVT 308 + + R + + A GQ A G + S+ ++ Sbjct: 94 NFQDNRGNARVIHYGTSNRDGGMQQVQASEGQPALIQVGQSIPITSTSTDGYGRIQSNTE 153 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + TP++ ++ E+S ++ +V+ DTTV G I Sbjct: 154 YRNVTQGFYVTPSLSGE-----TVRLEISSNNDRISHERADVVKVQSTDTTVTGKLGEWI 208 Query: 369 VLAGLLKDDIQQ 380 LAG + Sbjct: 209 TLAGFNQQSQAD 220 >gi|260172051|ref|ZP_05758463.1| hypothetical protein BacD2_09316 [Bacteroides sp. D2] Length = 521 Score = 37.0 bits (84), Expect = 7.0, Method: Composition-based stats. Identities = 29/267 (10%), Positives = 77/267 (28%), Gaps = 30/267 (11%) Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFI 131 + + L GK G V + +++ L + ++ +A+L + Sbjct: 232 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 291 Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 + E + L+G + + + FL + ++ + Sbjct: 292 PFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 351 Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226 + ++ + L +I E ++ + + + ++ + G Sbjct: 352 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 409 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S K ++ DF + + + + L++ ++ SG+ S Sbjct: 410 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 467 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313 G ++ G T G Sbjct: 468 EDKDGMVANWLFNNGNGNTKTFVSLAG 494 Score = 36.6 bits (83), Expect = 8.6, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 12/174 (6%) Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147 L G G V H GKQ + + I +T R + + I VE + L Sbjct: 169 LTGLKNGHTTVTFTDHKGKQAVVQVTVNPISIDVSNLTPRVGVNNKIMITVEKGNGGYSL 228 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 I Q+ + + + + + + E + L +T+ V+ Sbjct: 229 TAENEEIVAIQQVDDTRFNLIGKKAG-----------ITTVFVRDEAEQELSLTVTVVQA 277 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 D + +G + + + ++ F+++ + + ++ Sbjct: 278 DKVANLGSGNYFKVPFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARIN 331 >gi|293371632|ref|ZP_06618043.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f] gi|292633329|gb|EFF51899.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f] Length = 523 Score = 37.0 bits (84), Expect = 7.4, Method: Composition-based stats. Identities = 29/267 (10%), Positives = 77/267 (28%), Gaps = 30/267 (11%) Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFI 131 + + L GK G V + +++ L + ++ +A+L + Sbjct: 234 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 293 Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 + E + L+G + + + FL + ++ + Sbjct: 294 PFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 353 Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226 + ++ + L +I E ++ + + + ++ + G Sbjct: 354 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 411 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S K ++ DF + + + + L++ ++ SG+ S Sbjct: 412 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 469 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313 G ++ G T G Sbjct: 470 EDKDGMVANWLFNNGNGNTKTFVSLAG 496 Score = 36.6 bits (83), Expect = 9.0, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 12/174 (6%) Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147 L G G V H GKQ + + I +T R + + I VE + L Sbjct: 171 LTGLKNGHTTVTFTDHKGKQAVVQVTVNPISIDVSNLTPRVGVNNKIMITVEKGNGGYSL 230 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 I Q+ + + + + + + E + L +T+ V+ Sbjct: 231 TAENEEIVAIQQVDDTRFNLIGKKAG-----------ITTVFVRDEAEQELSLTVTVVQA 279 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 D + +G + + + ++ F+++ + + ++ Sbjct: 280 DKVANLGSGNYFKVPFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARIN 333 >gi|299147493|ref|ZP_07040558.1| hypothetical protein HMPREF9010_04168 [Bacteroides sp. 3_1_23] gi|298514771|gb|EFI38655.1| hypothetical protein HMPREF9010_04168 [Bacteroides sp. 3_1_23] Length = 516 Score = 36.6 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 28/267 (10%), Positives = 77/267 (28%), Gaps = 30/267 (11%) Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131 + + L GK G V + +++ + ++ +A+L + Sbjct: 227 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 286 Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 + E + L+G + + + FL + ++ + Sbjct: 287 PFEYNGMADESLKNLSTLTFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 346 Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226 + ++ + L +I E ++ + + + ++ + G Sbjct: 347 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 404 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S K ++ DF + + + + L++ ++ SG+ S Sbjct: 405 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 462 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313 G + ++ G T G Sbjct: 463 EDKDGMVANWSFNNGNGNTKTFVSLAG 489 >gi|237719594|ref|ZP_04550075.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229450863|gb|EEO56654.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 516 Score = 36.6 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 28/267 (10%), Positives = 76/267 (28%), Gaps = 30/267 (11%) Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131 + + L GK G V + +++ + ++ +A+L + Sbjct: 227 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 286 Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 + E + L+G + + + FL + ++ + Sbjct: 287 PFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 346 Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226 + ++ + L +I E ++ + + + ++ + G Sbjct: 347 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSQR--IALYVNGVRETL 404 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S K ++ DF + + + + L++ ++ SG+ S Sbjct: 405 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 462 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313 G ++ G T G Sbjct: 463 EDKDGMVANWLFNNGNGNTKTFVSLAG 489 >gi|326431310|gb|EGD76880.1| hypothetical protein PTSG_08227 [Salpingoeca sp. ATCC 50818] Length = 595 Score = 36.6 bits (83), Expect = 8.1, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 87/285 (30%), Gaps = 34/285 (11%) Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 + L D + +++ + R + R ++ + T G I Sbjct: 136 TSFHLFYDDPSRADYVEVSLPATATTYTA--RHLFSGRPYRFQIFASTGAGEGPHTPILV 193 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 ++ A L+E + +SSS + +I+G +QVT +V E + Sbjct: 194 TETAQSLTERVATAHRATSSQSSSSTSTVPG-SISGREQVTSRVQFVEEAK--------- 243 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + S A + V G L R + T+A Sbjct: 244 -----PTPITRGSLTAMIPAGPRTSTRAQDVAGQLGRTTLS---------EEAETVATGN 289 Query: 277 LTAISGQSASFTSGGQH---LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 TA+ G++ + S + +S A + + G L P S L+ Sbjct: 290 DTALPGETTANRSEDTRAGTPPQDDASKQDAGTGSRRKPGFTL-MAPRSTSDQPSVLQRW 348 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + G R+ T VE+ +G + ++ D Sbjct: 349 QHGQDKDSGQGGQA----SARQKPTRVEVLTGNQVSRGAFVRQDT 389 >gi|258645547|ref|ZP_05733016.1| putative outer membrane efflux protein [Dialister invisus DSM 15470] gi|260402903|gb|EEW96450.1| putative outer membrane efflux protein [Dialister invisus DSM 15470] Length = 502 Score = 36.6 bits (83), Expect = 8.1, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 10/119 (8%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L+ L + + ++ E + + L G V T + R + L+E L Q+ +++K Sbjct: 71 LQKNLNDMMPEGKVKAETSNIDIDLKGAVSTAIQNNRDIRLAELSLEQAETAVSQAAAAK 130 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +L +QV + GF + G + G + S+ GG Sbjct: 131 N-PSLSYKWARNQV---------KAGSANSAGFYGANHGYNQGLTLSWPIWTGGAVEGA 179 >gi|315920361|ref|ZP_07916601.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694236|gb|EFS31071.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 514 Score = 36.6 bits (83), Expect = 8.7, Method: Composition-based stats. Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 1/63 (1%) Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131 + + L GK G V + +++ + ++ +A+L + Sbjct: 225 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 284 Query: 132 ADS 134 Sbjct: 285 PFE 287 >gi|325289184|ref|YP_004265365.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM 8271] gi|324964585|gb|ADY55364.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM 8271] Length = 1618 Score = 36.6 bits (83), Expect = 9.5, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 6/101 (5%) Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV---V 81 + N V G ++ L + + D+ V++ + A V V Sbjct: 979 TTVAEPRTPSVSANTLTVNKGATASFTVSLGQGV---SAATAADITVANGSIASVSTGRV 1035 Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 + T+ + G G +I+ HD Q + + ++ Sbjct: 1036 TASGTVTVTGLAAGTTGIIVTFHDSAQTVKNIAVTVNAVSD 1076 >gi|84684255|ref|ZP_01012157.1| efflux transporter, RND family, MFP subunit [Maritimibacter alkaliphilus HTCC2654] gi|84668008|gb|EAQ14476.1| efflux transporter, RND family, MFP subunit [Rhodobacterales bacterium HTCC2654] Length = 490 Score = 36.6 bits (83), Expect = 9.9, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 17/207 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MR+L+R+ + L + +A + S + + S+ L Sbjct: 1 MRFLRRSLTGLFLAALTVAGLGLAAYIVRDAVETRMARTSGSMPARERVYSVAL------ 54 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD---GKQMLNLDILIE 117 V VQ VS +A V S RT+ + + G V+ +G + G ++ + +L+ Sbjct: 55 ---VPVQSQTVSPVLEAFGEVVSRRTLEIRARTAG--TVVELGENFVEGGRVQSGQMLVR 109 Query: 118 RDIAHLEMTL---RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 D + LE + R +AD+ V ++L Q + + Q + Sbjct: 110 IDPSDLEDAVALARADMADAEAEVSDAEAALILEQDDLASAQRQFELRQTAATRQQDLLD 169 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVT 201 + ++ L + +Q L Sbjct: 170 RGVGLAADLETARLAESSAEQAVLSAR 196 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.308 0.128 0.321 Lambda K H 0.267 0.0394 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,915,480,935 Number of Sequences: 14124377 Number of extensions: 115538502 Number of successful extensions: 424896 Number of sequences better than 10.0: 4280 Number of HSP's better than 10.0 without gapping: 3519 Number of HSP's successfully gapped in prelim test: 761 Number of HSP's that attempted gapping in prelim test: 411526 Number of HSP's gapped (non-prelim): 6351 length of query: 474 length of database: 4,842,793,630 effective HSP length: 143 effective length of query: 331 effective length of database: 2,823,007,719 effective search space: 934415554989 effective search space used: 934415554989 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 83 (36.6 bits)